# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- NTPase_I-T PF01931.13 gi|352681235|ref|YP_004891759.1| - 2e-16 60.1 0.4 8.3e-16 58.1 0.3 1.8 1 1 0 1 1 1 1 Protein of unknown function DUF84 Usp PF00582.21 gi|352681237|ref|YP_004891761.1| - 1.1e-36 126.0 0.5 1.2e-36 125.9 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|352681237|ref|YP_004891761.1| - 0.005 16.1 0.0 0.011 14.9 0.0 1.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Lactamase_B PF00753.22 gi|352681238|ref|YP_004891762.1| - 2.2e-09 37.2 9.5 4.9e-09 36.1 6.6 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|352681238|ref|YP_004891762.1| - 2.1e-05 24.1 0.9 3.9e-05 23.2 0.6 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|352681238|ref|YP_004891762.1| - 4.1e-05 23.3 0.1 5.8e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Amidase PF01425.16 gi|352681239|ref|YP_004891763.1| - 2e-90 303.7 0.3 3.6e-90 302.9 0.2 1.4 1 1 0 1 1 1 1 Amidase DUF1398 PF07166.6 gi|352681239|ref|YP_004891763.1| - 0.063 13.1 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1398) Translin PF01997.11 gi|352681240|ref|YP_004891764.1| - 1.1e-33 116.5 0.6 1.3e-33 116.2 0.4 1.0 1 0 0 1 1 1 1 Translin family AA_permease_2 PF13520.1 gi|352681241|ref|YP_004891765.1| - 5.5e-30 104.2 37.6 6.6e-30 103.9 26.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|352681241|ref|YP_004891765.1| - 9.3e-19 67.1 36.9 1.3e-18 66.6 25.6 1.1 1 0 0 1 1 1 1 Amino acid permease VirB3 PF05101.8 gi|352681241|ref|YP_004891765.1| - 9.2 6.3 15.5 0.049 13.6 0.7 3.4 3 0 0 3 3 3 0 Type IV secretory pathway, VirB3-like protein HTH_45 PF14947.1 gi|352681242|ref|YP_004891766.1| - 0.00082 19.1 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|352681242|ref|YP_004891766.1| - 0.074 13.0 0.0 0.091 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Presenilin PF01080.12 gi|352681243|ref|YP_004891767.1| - 0.055 12.3 0.7 0.058 12.2 0.5 1.0 1 0 0 1 1 1 0 Presenilin Radical_SAM PF04055.16 gi|352681244|ref|YP_004891768.1| - 3.8e-13 49.9 0.0 7.4e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|352681244|ref|YP_004891768.1| - 3.6e-08 33.4 0.0 7.4e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|352681244|ref|YP_004891768.1| - 1.5e-07 31.6 0.0 2.7e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain MFS_1 PF07690.11 gi|352681245|ref|YP_004891769.1| - 2.1e-22 79.3 54.1 5.3e-15 54.9 11.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Ribosomal_S10 PF00338.17 gi|352681246|ref|YP_004891770.1| - 1.9e-29 101.3 0.1 2.1e-29 101.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Ribosomal_L11 PF00298.14 gi|352681246|ref|YP_004891770.1| - 0.01 15.9 0.1 0.017 15.2 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain GTP_EFTU PF00009.22 gi|352681247|ref|YP_004891771.1| - 4.3e-54 182.8 0.0 6.6e-54 182.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|352681247|ref|YP_004891771.1| - 3.5e-31 107.2 0.5 3.1e-30 104.2 0.0 2.7 2 1 1 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|352681247|ref|YP_004891771.1| - 3.9e-20 71.7 5.5 7.3e-20 70.8 1.9 2.7 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|352681247|ref|YP_004891771.1| - 3.5e-12 45.7 1.1 9.9e-12 44.3 0.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|352681247|ref|YP_004891771.1| - 4.6e-05 23.3 0.0 0.00011 22.1 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|352681247|ref|YP_004891771.1| - 0.00012 21.4 0.6 0.0015 17.8 0.2 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|352681247|ref|YP_004891771.1| - 0.0021 18.5 0.0 0.0096 16.4 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein Septin PF00735.13 gi|352681247|ref|YP_004891771.1| - 0.019 13.9 0.0 0.047 12.6 0.0 1.6 1 0 0 1 1 1 0 Septin Dynamin_N PF00350.18 gi|352681247|ref|YP_004891771.1| - 0.065 13.0 0.1 7.7 6.3 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Nudix_N PF12535.3 gi|352681247|ref|YP_004891771.1| - 0.069 12.6 0.0 0.36 10.3 0.0 2.0 2 0 0 2 2 2 0 Hydrolase of X-linked nucleoside diphosphate N terminal Ras PF00071.17 gi|352681247|ref|YP_004891771.1| - 0.076 12.3 0.1 0.43 9.9 0.0 2.1 2 1 0 2 2 2 0 Ras family Ribonuc_L-PSP PF01042.16 gi|352681248|ref|YP_004891772.1| - 4.5e-44 149.0 0.0 5e-44 148.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP GTPase_Cys_C PF12631.2 gi|352681251|ref|YP_004891775.1| - 3 8.3 7.6 0.91 9.9 1.6 2.9 3 1 0 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Class_IIIsignal PF04021.7 gi|352681252|ref|YP_004891776.1| - 1 9.1 8.7 0.16 11.7 2.5 2.4 2 0 0 2 2 2 0 Class III signal peptide Polyketide_cyc2 PF10604.4 gi|352681253|ref|YP_004891777.1| - 0.0011 19.1 0.3 0.0044 17.1 0.2 2.1 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|352681253|ref|YP_004891777.1| - 0.029 14.3 0.0 0.054 13.4 0.0 1.5 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Methyltransf_23 PF13489.1 gi|352681254|ref|YP_004891778.1| - 0.0017 18.1 0.0 0.0024 17.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Thermopsin PF05317.6 gi|352681256|ref|YP_004891780.1| - 1.4e-47 161.8 4.0 1.4e-47 161.8 2.7 2.1 2 0 0 2 2 2 1 Thermopsin DUF4402 PF14352.1 gi|352681256|ref|YP_004891780.1| - 0.099 13.1 1.6 2.6 8.5 0.0 3.7 4 1 0 4 4 4 0 Domain of unknown function (DUF4402) AIM24 PF01987.12 gi|352681258|ref|YP_004891782.1| - 2.6e-47 161.0 0.4 3e-47 160.8 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 adh_short PF00106.20 gi|352681259|ref|YP_004891783.1| - 1.8e-31 109.3 0.1 2.4e-31 108.9 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|352681259|ref|YP_004891783.1| - 6.2e-12 45.7 0.0 7.7e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|352681259|ref|YP_004891783.1| - 2.7e-11 43.4 0.1 4.8e-11 42.6 0.1 1.4 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|352681259|ref|YP_004891783.1| - 9.7e-05 22.4 0.1 0.00025 21.0 0.1 1.6 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|352681259|ref|YP_004891783.1| - 0.0011 18.4 0.0 0.0022 17.4 0.0 1.6 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.5 gi|352681259|ref|YP_004891783.1| - 0.0015 17.7 0.0 0.0023 17.1 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Eno-Rase_NADH_b PF12242.3 gi|352681259|ref|YP_004891783.1| - 0.0095 15.7 0.1 0.03 14.1 0.1 1.8 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TGS PF02824.16 gi|352681259|ref|YP_004891783.1| - 0.018 14.8 0.1 0.17 11.7 0.0 2.4 2 0 0 2 2 2 0 TGS domain EamA PF00892.15 gi|352681260|ref|YP_004891784.1| - 4.8e-31 107.4 32.5 7.1e-16 58.4 7.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|352681260|ref|YP_004891784.1| - 1.8e-08 34.5 31.7 6.7e-05 23.0 6.3 3.2 2 2 1 3 3 3 2 Multidrug resistance efflux transporter UAA PF08449.6 gi|352681260|ref|YP_004891784.1| - 0.00053 18.9 0.6 0.00053 18.9 0.4 2.4 2 1 0 3 3 3 1 UAA transporter family TPT PF03151.11 gi|352681260|ref|YP_004891784.1| - 0.0006 19.4 18.9 0.0016 18.1 4.3 2.6 2 1 0 2 2 2 2 Triose-phosphate Transporter family Tmemb_170 PF10190.4 gi|352681260|ref|YP_004891784.1| - 0.1 12.6 0.2 0.1 12.6 0.1 3.1 3 1 0 3 3 3 0 Putative transmembrane protein 170 MFS_1 PF07690.11 gi|352681261|ref|YP_004891785.1| - 8.8e-25 87.1 71.3 2.3e-15 56.1 23.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|352681261|ref|YP_004891785.1| - 1.7e-06 26.9 38.0 1.5e-05 23.7 10.6 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|352681261|ref|YP_004891785.1| - 0.056 13.2 5.5 1.3 8.8 0.0 4.0 4 2 0 4 4 4 0 MFS_1 like family MFS_2 PF13347.1 gi|352681261|ref|YP_004891785.1| - 0.33 9.2 34.5 0.011 14.1 6.8 2.4 2 0 0 2 2 2 0 MFS/sugar transport protein Thermopsin PF05317.6 gi|352681262|ref|YP_004891786.1| - 2.2e-23 82.5 6.3 4.5e-23 81.5 4.4 1.5 1 1 0 1 1 1 1 Thermopsin Thioredoxin PF00085.15 gi|352681263|ref|YP_004891787.1| - 2.4e-07 30.3 0.0 2.7e-07 30.2 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|352681263|ref|YP_004891787.1| - 0.032 14.0 0.1 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|352681263|ref|YP_004891787.1| - 0.077 13.1 0.3 1.1 9.5 0.2 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain HTH_24 PF13412.1 gi|352681265|ref|YP_004891789.1| - 2.5e-05 23.5 0.1 0.00014 21.1 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|352681265|ref|YP_004891789.1| - 0.021 15.1 0.3 0.96 9.8 0.1 2.3 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|352681265|ref|YP_004891789.1| - 0.023 14.2 0.0 0.094 12.3 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain rve_3 PF13683.1 gi|352681265|ref|YP_004891789.1| - 0.041 13.3 0.1 0.081 12.4 0.1 1.4 1 0 0 1 1 1 0 Integrase core domain MarR PF01047.17 gi|352681265|ref|YP_004891789.1| - 0.13 12.0 0.0 3.7 7.3 0.0 2.2 2 0 0 2 2 2 0 MarR family NiFe_hyd_SSU_C PF14720.1 gi|352681266|ref|YP_004891790.1| - 4.8e-25 87.4 1.9 8.2e-25 86.6 1.3 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.17 gi|352681266|ref|YP_004891790.1| - 5.1e-18 64.9 0.0 1.7e-17 63.2 0.0 1.9 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.4 gi|352681266|ref|YP_004891790.1| - 0.0013 18.5 0.3 0.0013 18.5 0.2 3.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N PF00033.14 gi|352681267|ref|YP_004891791.1| - 1.1e-08 34.6 15.8 1.1e-08 34.6 11.0 2.4 2 2 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ferric_reduct PF01794.14 gi|352681267|ref|YP_004891791.1| - 0.00037 20.5 2.3 0.00037 20.5 1.6 3.4 1 1 2 3 3 3 1 Ferric reductase like transmembrane component DUF2107 PF09880.4 gi|352681267|ref|YP_004891791.1| - 0.064 13.1 0.4 0.064 13.1 0.2 2.7 2 1 0 2 2 2 0 Predicted membrane protein (DUF2107) PepSY_TM_3 PF13706.1 gi|352681267|ref|YP_004891791.1| - 2 7.9 11.3 0.51 9.8 1.9 3.4 3 0 0 3 3 3 0 PepSY-associated TM helix PspB PF06667.7 gi|352681267|ref|YP_004891791.1| - 2.4 8.1 8.4 15 5.5 0.7 3.6 3 0 0 3 3 3 0 Phage shock protein B NiFeSe_Hases PF00374.14 gi|352681268|ref|YP_004891792.1| - 2.1e-43 148.8 0.3 9.3e-25 87.3 0.3 3.3 2 2 0 2 2 2 2 Nickel-dependent hydrogenase HycI PF01750.13 gi|352681269|ref|YP_004891793.1| - 0.0011 18.5 0.0 0.0014 18.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease SAP PF02037.22 gi|352681269|ref|YP_004891793.1| - 0.16 11.4 0.4 0.51 9.9 0.0 2.0 2 0 0 2 2 2 0 SAP domain DUF488 PF04343.8 gi|352681270|ref|YP_004891794.1| - 0.0094 16.3 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Phosphodiest PF01663.17 gi|352681272|ref|YP_004891796.1| - 7.1e-23 81.5 0.0 2.5e-21 76.4 0.0 2.6 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|352681272|ref|YP_004891796.1| - 1.5e-07 31.3 0.0 7.5e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 PglZ domain DJ-1_PfpI PF01965.19 gi|352681273|ref|YP_004891797.1| - 4.9e-37 126.6 0.0 5.7e-37 126.4 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|352681273|ref|YP_004891797.1| - 3.1e-09 36.3 0.0 5.6e-09 35.4 0.0 1.3 1 1 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|352681273|ref|YP_004891797.1| - 0.00032 20.1 0.0 0.00041 19.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|352681273|ref|YP_004891797.1| - 0.0032 17.0 0.0 0.0043 16.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain RimK PF08443.6 gi|352681274|ref|YP_004891798.1| - 8.7e-38 129.7 0.0 2.2e-37 128.4 0.0 1.7 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|352681274|ref|YP_004891798.1| - 2e-10 40.7 0.0 4e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|352681274|ref|YP_004891798.1| - 1.1e-09 38.2 0.0 1.8e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|352681274|ref|YP_004891798.1| - 2.6e-07 29.9 0.0 4.1e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|352681274|ref|YP_004891798.1| - 0.029 13.7 0.0 0.089 12.1 0.0 1.7 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus Kinin PF08260.6 gi|352681274|ref|YP_004891798.1| - 9.6 6.9 6.9 1 9.8 0.6 2.3 2 0 0 2 2 2 0 Insect kinin peptide CPSase_L_D2 PF02786.12 gi|352681275|ref|YP_004891799.1| - 5.8e-94 313.2 0.0 1.2e-62 210.9 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|352681275|ref|YP_004891799.1| - 5.3e-31 106.9 0.0 1e-17 64.1 0.0 3.0 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|352681275|ref|YP_004891799.1| - 4.8e-30 104.6 0.4 1.9e-14 53.8 0.1 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|352681275|ref|YP_004891799.1| - 9.2e-28 96.4 0.0 3.2e-27 94.7 0.0 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|352681275|ref|YP_004891799.1| - 3e-21 75.5 0.0 1.3e-07 30.6 0.0 3.5 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|352681275|ref|YP_004891799.1| - 2.4e-16 59.5 0.1 3.9e-08 32.8 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|352681275|ref|YP_004891799.1| - 1.4e-10 40.9 0.0 0.00046 19.7 0.0 2.9 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|352681275|ref|YP_004891799.1| - 2.8e-10 39.8 0.0 0.00034 19.8 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|352681275|ref|YP_004891799.1| - 6.7e-10 38.6 0.0 0.00013 21.4 0.0 2.7 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus GARS_A PF01071.14 gi|352681275|ref|YP_004891799.1| - 1e-05 25.1 0.0 0.015 14.9 0.0 2.7 2 1 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_2 PF08442.5 gi|352681275|ref|YP_004891799.1| - 0.02 14.2 0.0 1.1 8.6 0.0 2.5 2 0 0 2 2 2 0 ATP-grasp domain MFS_1 PF07690.11 gi|352681276|ref|YP_004891800.1| - 6.9e-24 84.2 54.3 7e-24 84.1 36.7 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily OATP PF03137.15 gi|352681276|ref|YP_004891800.1| - 0.00026 19.1 0.2 0.00043 18.4 0.2 1.3 1 0 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family DUF1228 PF06779.9 gi|352681276|ref|YP_004891800.1| - 0.1 12.6 0.2 0.1 12.6 0.2 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1228) Lactamase_B PF00753.22 gi|352681277|ref|YP_004891801.1| - 5.9e-22 78.2 2.0 1.5e-21 76.9 1.4 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|352681277|ref|YP_004891801.1| - 9.4e-06 25.2 0.0 1.4e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain C5-epim_C PF06662.8 gi|352681277|ref|YP_004891801.1| - 0.17 11.1 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 D-glucuronyl C5-epimerase C-terminus HTH_11 PF08279.7 gi|352681278|ref|YP_004891802.1| - 0.0023 17.5 0.2 0.0092 15.6 0.3 1.9 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|352681278|ref|YP_004891802.1| - 0.0082 15.7 4.3 0.023 14.2 2.8 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain FUR PF01475.14 gi|352681278|ref|YP_004891802.1| - 0.066 13.1 0.1 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Ferric uptake regulator family MarR_2 PF12802.2 gi|352681278|ref|YP_004891802.1| - 0.15 11.7 1.3 0.4 10.3 0.9 1.7 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|352681278|ref|YP_004891802.1| - 0.19 11.4 0.9 26 4.5 0.1 3.0 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|352681278|ref|YP_004891802.1| - 0.4 10.8 2.2 2.6 8.2 0.4 2.7 2 1 1 3 3 3 0 Transcriptional regulator NrfD PF03916.9 gi|352681279|ref|YP_004891803.1| - 7.5e-26 91.2 39.3 1.4e-25 90.3 27.1 1.5 1 1 0 1 1 1 1 Polysulphide reductase, NrfD Molydop_binding PF01568.16 gi|352681280|ref|YP_004891804.1| - 1.2e-17 63.7 0.3 6.1e-17 61.4 0.0 2.5 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|352681280|ref|YP_004891804.1| - 7.9e-06 24.8 0.0 0.00064 18.5 0.0 3.1 4 0 0 4 4 4 1 Molybdopterin oxidoreductase TAT_signal PF10518.4 gi|352681280|ref|YP_004891804.1| - 0.0011 18.7 0.9 0.0029 17.4 0.6 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|352681280|ref|YP_004891804.1| - 0.094 11.9 3.4 0.26 10.4 2.4 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fer4_11 PF13247.1 gi|352681281|ref|YP_004891805.1| - 6.6e-25 86.8 6.2 6.6e-25 86.8 4.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352681281|ref|YP_004891805.1| - 2.4e-17 63.0 12.5 2.5e-08 34.1 0.5 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681281|ref|YP_004891805.1| - 5.3e-13 49.0 20.7 9e-06 25.8 2.5 3.9 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352681281|ref|YP_004891805.1| - 4.8e-12 44.9 27.4 1.6e-06 27.4 3.6 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|352681281|ref|YP_004891805.1| - 4.6e-09 35.7 34.7 1.1e-05 25.0 3.0 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352681281|ref|YP_004891805.1| - 6e-09 35.5 25.8 5.2e-05 22.9 8.6 3.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352681281|ref|YP_004891805.1| - 7.7e-09 34.9 33.6 2e-05 24.2 2.0 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|352681281|ref|YP_004891805.1| - 7.3e-08 32.4 34.5 0.036 14.6 4.0 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352681281|ref|YP_004891805.1| - 2e-07 30.9 19.7 0.002 18.1 0.7 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352681281|ref|YP_004891805.1| - 4.3e-07 29.7 35.0 0.00019 21.5 2.3 4.5 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|352681281|ref|YP_004891805.1| - 4.6e-05 24.0 19.9 0.12 13.1 3.3 4.3 3 1 0 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|352681281|ref|YP_004891805.1| - 0.00013 22.1 21.5 0.0087 16.3 0.8 4.1 3 1 2 5 5 5 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681281|ref|YP_004891805.1| - 0.0011 18.8 8.2 0.0011 18.8 5.6 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352681281|ref|YP_004891805.1| - 0.078 13.4 25.3 0.16 12.4 2.6 4.2 3 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681281|ref|YP_004891805.1| - 8.3 7.0 19.6 1.5 9.4 3.2 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain Nitrate_red_del PF02613.10 gi|352681282|ref|YP_004891806.1| - 4.3e-12 46.0 0.2 7.9e-12 45.1 0.1 1.3 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4 PF00037.22 gi|352681283|ref|YP_004891807.1| - 1.5e-22 78.2 35.7 6.7e-08 31.8 1.3 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|352681283|ref|YP_004891807.1| - 7.9e-21 74.1 23.6 2.1e-10 40.8 5.7 3.7 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681283|ref|YP_004891807.1| - 1.1e-17 63.0 42.2 7.7e-07 28.7 0.6 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352681283|ref|YP_004891807.1| - 1.1e-13 50.7 36.6 1.3e-06 28.0 6.4 4.1 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681283|ref|YP_004891807.1| - 2.9e-12 46.6 28.5 3.2e-06 27.3 4.4 3.9 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681283|ref|YP_004891807.1| - 6.2e-12 46.0 25.4 2.5e-05 24.9 0.1 4.7 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|352681283|ref|YP_004891807.1| - 7.4e-11 41.3 37.3 0.00011 21.9 2.2 5.4 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352681283|ref|YP_004891807.1| - 1e-09 38.0 29.5 1.1e-07 31.5 4.3 3.6 3 1 2 5 5 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352681283|ref|YP_004891807.1| - 4.9e-07 29.6 32.5 0.0035 17.3 7.4 4.4 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352681283|ref|YP_004891807.1| - 3.9e-06 27.1 29.5 0.077 13.3 0.1 5.0 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352681283|ref|YP_004891807.1| - 1.1e-05 25.3 51.4 0.0067 16.6 2.1 5.9 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|352681283|ref|YP_004891807.1| - 0.00023 21.5 33.2 0.021 15.2 0.5 5.5 5 1 1 6 6 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681283|ref|YP_004891807.1| - 0.0017 18.8 29.2 0.075 13.6 0.6 4.9 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|352681283|ref|YP_004891807.1| - 0.028 14.9 5.0 0.028 14.9 3.5 5.7 7 0 0 7 7 5 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|352681283|ref|YP_004891807.1| - 0.062 13.1 13.9 0.12 12.2 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|352681283|ref|YP_004891807.1| - 0.12 12.2 0.2 0.12 12.2 0.2 4.4 2 2 2 4 4 4 0 Divergent 4Fe-4S mono-cluster Zn-ribbon_8 PF09723.5 gi|352681283|ref|YP_004891807.1| - 0.26 11.2 0.0 0.26 11.2 0.0 4.7 6 1 0 6 6 2 0 Zinc ribbon domain Fer4_13 PF13370.1 gi|352681283|ref|YP_004891807.1| - 0.54 10.6 33.9 0.8 10.1 2.3 5.1 4 1 1 5 5 5 0 4Fe-4S single cluster domain Lactamase_B_2 PF12706.2 gi|352681284|ref|YP_004891808.1| - 1.1e-26 93.6 0.7 1.3e-26 93.4 0.5 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352681284|ref|YP_004891808.1| - 6.3e-13 48.8 3.8 1.5e-12 47.5 2.6 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|352681284|ref|YP_004891808.1| - 0.029 14.0 0.1 0.057 13.1 0.1 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|352681285|ref|YP_004891809.1| - 3.2e-36 124.6 0.0 4.3e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681285|ref|YP_004891809.1| - 8.8e-12 45.5 0.2 1.6e-05 25.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|352681285|ref|YP_004891809.1| - 4.3e-07 29.8 0.1 1.3e-06 28.2 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_15 PF13175.1 gi|352681285|ref|YP_004891809.1| - 8e-07 28.4 0.0 0.0073 15.3 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|352681285|ref|YP_004891809.1| - 1.7e-05 24.1 0.2 0.045 12.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|352681285|ref|YP_004891809.1| - 5.4e-05 23.2 1.1 0.00026 21.0 0.7 1.8 1 1 0 1 1 1 1 AAA ATPase domain TOBE PF03459.12 gi|352681285|ref|YP_004891809.1| - 9.6e-05 22.4 0.0 0.00079 19.4 0.0 2.4 3 0 0 3 3 2 1 TOBE domain AAA_19 PF13245.1 gi|352681285|ref|YP_004891809.1| - 0.00024 20.7 0.0 0.0008 19.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|352681285|ref|YP_004891809.1| - 0.00028 21.2 1.8 0.00047 20.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|352681285|ref|YP_004891809.1| - 0.00042 20.6 0.0 0.00066 19.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352681285|ref|YP_004891809.1| - 0.00052 20.8 0.3 0.0017 19.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|352681285|ref|YP_004891809.1| - 0.0013 18.4 0.1 0.0078 15.8 0.0 2.1 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|352681285|ref|YP_004891809.1| - 0.0015 18.2 0.0 0.0032 17.1 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|352681285|ref|YP_004891809.1| - 0.003 17.6 0.6 0.012 15.6 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|352681285|ref|YP_004891809.1| - 0.0036 17.1 0.0 0.012 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|352681285|ref|YP_004891809.1| - 0.0044 17.2 0.1 0.043 14.0 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|352681285|ref|YP_004891809.1| - 0.0066 16.3 0.0 0.03 14.2 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|352681285|ref|YP_004891809.1| - 0.0084 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|352681285|ref|YP_004891809.1| - 0.011 15.3 0.1 0.13 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|352681285|ref|YP_004891809.1| - 0.015 14.7 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Miro PF08477.8 gi|352681285|ref|YP_004891809.1| - 0.017 15.6 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|352681285|ref|YP_004891809.1| - 0.022 14.3 0.0 0.048 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain TOBE_3 PF12857.2 gi|352681285|ref|YP_004891809.1| - 0.024 14.4 0.4 0.29 11.0 0.0 2.7 3 0 0 3 3 2 0 TOBE-like domain DUF258 PF03193.11 gi|352681285|ref|YP_004891809.1| - 0.025 13.7 0.0 0.042 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF3987 PF13148.1 gi|352681285|ref|YP_004891809.1| - 0.026 13.1 0.1 0.22 10.0 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3987) T2SE PF00437.15 gi|352681285|ref|YP_004891809.1| - 0.026 13.4 0.0 0.045 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|352681285|ref|YP_004891809.1| - 0.027 14.1 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|352681285|ref|YP_004891809.1| - 0.028 14.3 0.1 0.093 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|352681285|ref|YP_004891809.1| - 0.028 13.5 0.0 0.41 9.7 0.0 2.1 2 0 0 2 2 2 0 KaiC cobW PF02492.14 gi|352681285|ref|YP_004891809.1| - 0.048 13.1 0.2 0.097 12.1 0.0 1.6 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.1 gi|352681285|ref|YP_004891809.1| - 0.051 12.0 0.0 0.46 8.8 0.0 1.9 1 1 1 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|352681285|ref|YP_004891809.1| - 0.11 12.4 0.1 0.67 9.9 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA12 PF10443.4 gi|352681285|ref|YP_004891809.1| - 0.12 10.7 0.0 0.16 10.3 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein AAA_5 PF07728.9 gi|352681285|ref|YP_004891809.1| - 0.14 11.9 0.0 0.57 9.9 0.0 2.0 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|352681285|ref|YP_004891809.1| - 0.14 11.5 1.2 0.79 9.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|352681286|ref|YP_004891810.1| - 8e-21 74.3 44.3 7.7e-13 48.3 12.6 4.4 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|352681287|ref|YP_004891811.1| - 5.6e-31 108.4 4.3 1.3e-30 107.2 3.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|352681287|ref|YP_004891811.1| - 2.5e-25 89.7 2.2 3.7e-25 89.2 1.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|352681287|ref|YP_004891811.1| - 0.0011 18.3 0.0 0.003 16.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein GspL_C PF12693.2 gi|352681287|ref|YP_004891811.1| - 0.13 11.9 4.8 2.5 7.8 0.0 2.8 3 0 0 3 3 3 0 GspL periplasmic domain RHH_1 PF01402.16 gi|352681290|ref|YP_004891814.1| - 2.2e-06 27.2 0.2 5.5e-06 26.0 0.2 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF1804 PF08822.6 gi|352681290|ref|YP_004891814.1| - 0.072 12.8 0.5 0.14 11.8 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) Glyco_transf_21 PF13506.1 gi|352681291|ref|YP_004891815.1| - 5.3e-19 68.1 0.0 9e-19 67.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|352681291|ref|YP_004891815.1| - 8.4e-15 54.8 0.0 1.2e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352681291|ref|YP_004891815.1| - 2e-14 53.9 0.1 3e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 ROK PF00480.15 gi|352681293|ref|YP_004891817.1| - 3.2e-29 102.0 0.0 4.5e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.16 gi|352681293|ref|YP_004891817.1| - 0.02 14.2 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain DEDD_Tnp_IS110 PF01548.12 gi|352681293|ref|YP_004891817.1| - 0.058 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Transposase Radical_SAM PF04055.16 gi|352681294|ref|YP_004891818.1| - 5.4e-11 42.9 0.0 1e-10 42.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|352681294|ref|YP_004891818.1| - 3.8e-06 27.0 0.0 1.3e-05 25.3 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|352681294|ref|YP_004891818.1| - 3.3e-05 23.9 0.0 7.4e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|352681294|ref|YP_004891818.1| - 0.0029 17.9 0.5 0.0056 17.0 0.0 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain MoeZ_MoeB PF05237.8 gi|352681294|ref|YP_004891818.1| - 0.051 13.1 0.0 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 MoeZ/MoeB domain Dioxygenase_N PF04444.9 gi|352681294|ref|YP_004891818.1| - 0.15 12.0 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Catechol dioxygenase N terminus ABC_tran PF00005.22 gi|352681296|ref|YP_004891820.1| - 7.2e-55 185.0 0.0 3.2e-28 98.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|352681296|ref|YP_004891820.1| - 9.8e-22 78.2 0.4 5.5e-06 26.5 0.0 4.1 3 1 1 4 4 4 4 AAA domain SMC_N PF02463.14 gi|352681296|ref|YP_004891820.1| - 3.8e-15 55.7 2.8 3.1e-05 23.3 0.3 4.0 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681296|ref|YP_004891820.1| - 2.1e-11 43.1 0.2 0.00016 21.1 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|352681296|ref|YP_004891820.1| - 7.1e-08 32.2 2.2 0.13 11.6 0.0 4.1 4 0 0 4 4 4 2 AAA-like domain AAA_25 PF13481.1 gi|352681296|ref|YP_004891820.1| - 1.3e-07 31.2 0.1 0.053 12.9 0.0 3.6 4 0 0 4 4 4 2 AAA domain AAA_22 PF13401.1 gi|352681296|ref|YP_004891820.1| - 1.3e-07 31.7 1.2 0.034 14.2 0.0 3.5 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|352681296|ref|YP_004891820.1| - 2.9e-07 31.0 0.1 0.014 15.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|352681296|ref|YP_004891820.1| - 3.7e-07 29.9 0.1 0.051 13.4 0.0 3.6 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|352681296|ref|YP_004891820.1| - 1.9e-06 27.0 0.1 0.003 16.5 0.0 2.7 3 0 0 3 3 3 2 Type II/IV secretion system protein DUF258 PF03193.11 gi|352681296|ref|YP_004891820.1| - 5.2e-06 25.7 0.1 0.0083 15.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 MobB PF03205.9 gi|352681296|ref|YP_004891820.1| - 8.8e-06 25.4 0.3 0.12 12.0 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|352681296|ref|YP_004891820.1| - 1.5e-05 24.9 1.2 0.0069 16.3 0.0 2.7 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|352681296|ref|YP_004891820.1| - 2e-05 24.2 0.7 0.29 10.7 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_16 PF13191.1 gi|352681296|ref|YP_004891820.1| - 2.3e-05 24.4 3.5 0.063 13.2 0.1 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|352681296|ref|YP_004891820.1| - 4.9e-05 23.2 0.3 0.42 10.4 0.1 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|352681296|ref|YP_004891820.1| - 0.00011 21.4 0.2 0.015 14.4 0.0 2.8 3 1 1 4 4 3 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|352681296|ref|YP_004891820.1| - 0.00017 22.3 3.7 0.4 11.5 0.1 3.0 2 2 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|352681296|ref|YP_004891820.1| - 0.00021 20.2 0.7 0.18 10.6 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain RNA_helicase PF00910.17 gi|352681296|ref|YP_004891820.1| - 0.00046 20.3 0.1 1.2 9.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase ABC_ATPase PF09818.4 gi|352681296|ref|YP_004891820.1| - 0.00048 18.8 0.3 1.1 7.7 0.0 3.0 3 0 0 3 3 3 2 Predicted ATPase of the ABC class NACHT PF05729.7 gi|352681296|ref|YP_004891820.1| - 0.00048 19.8 0.9 0.99 9.0 0.0 2.6 3 0 0 3 3 2 2 NACHT domain IstB_IS21 PF01695.12 gi|352681296|ref|YP_004891820.1| - 0.00058 19.3 2.2 1.9 7.8 0.0 4.0 4 0 0 4 4 4 1 IstB-like ATP binding protein Dynamin_N PF00350.18 gi|352681296|ref|YP_004891820.1| - 0.0008 19.2 1.4 0.15 11.8 0.2 2.3 2 0 0 2 2 2 1 Dynamin family AAA PF00004.24 gi|352681296|ref|YP_004891820.1| - 0.0011 19.2 0.1 22 5.2 0.0 4.0 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|352681296|ref|YP_004891820.1| - 0.0012 18.6 0.3 0.26 10.9 0.0 2.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_5 PF07728.9 gi|352681296|ref|YP_004891820.1| - 0.0012 18.5 0.8 1.5 8.5 0.0 3.6 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|352681296|ref|YP_004891820.1| - 0.0017 17.8 0.0 0.28 10.6 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|352681296|ref|YP_004891820.1| - 0.0017 17.4 0.3 0.15 11.1 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin Miro PF08477.8 gi|352681296|ref|YP_004891820.1| - 0.002 18.6 0.2 2.7 8.5 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein AAA_14 PF13173.1 gi|352681296|ref|YP_004891820.1| - 0.0024 17.7 0.1 1.4 8.8 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|352681296|ref|YP_004891820.1| - 0.0026 17.4 1.9 1.3 8.7 0.5 3.1 2 1 0 2 2 2 1 Part of AAA domain AAA_15 PF13175.1 gi|352681296|ref|YP_004891820.1| - 0.0033 16.5 0.0 1.3 7.9 0.0 3.5 4 0 0 4 4 4 1 AAA ATPase domain DEAD PF00270.24 gi|352681296|ref|YP_004891820.1| - 0.0046 16.4 0.0 5.7 6.3 0.0 3.4 2 2 0 2 2 2 0 DEAD/DEAH box helicase ATP_bind_1 PF03029.12 gi|352681296|ref|YP_004891820.1| - 0.005 16.4 0.3 2.8 7.4 0.0 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|352681296|ref|YP_004891820.1| - 0.0071 16.6 1.5 0.97 9.7 0.0 3.0 3 0 0 3 3 2 1 AAA domain AIG1 PF04548.11 gi|352681296|ref|YP_004891820.1| - 0.0078 15.3 0.3 0.0078 15.3 0.2 1.7 2 0 0 2 2 1 1 AIG1 family cobW PF02492.14 gi|352681296|ref|YP_004891820.1| - 0.0083 15.5 0.9 1.3 8.4 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.12 gi|352681296|ref|YP_004891820.1| - 0.02 14.7 1.0 1.9 8.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 UPF0079 PF02367.12 gi|352681296|ref|YP_004891820.1| - 0.022 14.4 0.3 1.8 8.2 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|352681296|ref|YP_004891820.1| - 0.024 13.7 4.2 3.8 6.5 0.0 3.6 4 0 0 4 4 4 0 KaiC Septin PF00735.13 gi|352681296|ref|YP_004891820.1| - 0.025 13.6 0.2 0.58 9.1 0.0 2.1 2 0 0 2 2 2 0 Septin PduV-EutP PF10662.4 gi|352681296|ref|YP_004891820.1| - 0.036 13.5 0.1 0.67 9.4 0.0 2.5 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.15 gi|352681296|ref|YP_004891820.1| - 0.073 11.7 0.0 2.7 6.5 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit SRP54 PF00448.17 gi|352681296|ref|YP_004891820.1| - 0.08 12.3 0.6 9.4 5.6 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|352681296|ref|YP_004891820.1| - 0.17 11.8 0.5 27 4.6 0.0 2.9 3 0 0 3 3 2 0 AAA domain NTPase_1 PF03266.10 gi|352681296|ref|YP_004891820.1| - 0.31 10.7 2.1 6.8 6.3 0.0 2.8 3 0 0 3 3 2 0 NTPase FeoB_N PF02421.13 gi|352681296|ref|YP_004891820.1| - 0.41 9.9 3.0 2.9 7.1 0.1 2.5 3 0 0 3 3 2 0 Ferrous iron transport protein B CbiQ PF02361.11 gi|352681297|ref|YP_004891821.1| - 2.5e-24 86.1 11.8 2.5e-24 86.1 8.2 1.4 2 0 0 2 2 2 1 Cobalt transport protein Sugar_tr PF00083.19 gi|352681298|ref|YP_004891822.1| - 3.3e-52 177.5 19.6 4.6e-52 177.1 13.6 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|352681298|ref|YP_004891822.1| - 9.1e-29 100.2 43.8 6.4e-28 97.4 24.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Oxidored_q6 PF01058.17 gi|352681299|ref|YP_004891823.1| - 2.6e-25 88.5 0.1 3.7e-25 88.0 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Glyco_transf_43 PF03360.11 gi|352681299|ref|YP_004891823.1| - 0.014 14.9 0.2 0.021 14.4 0.1 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 43 Complex1_30kDa PF00329.14 gi|352681300|ref|YP_004891824.1| - 4.1e-28 97.6 0.0 5.2e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADH-u_ox-rdase PF10785.4 gi|352681301|ref|YP_004891825.1| - 0.014 15.5 0.1 0.023 14.9 0.0 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Ribosomal_S14 PF00253.16 gi|352681302|ref|YP_004891826.1| - 0.12 11.7 0.2 0.32 10.3 0.2 1.6 1 1 0 1 1 1 0 Ribosomal protein S14p/S29e Rad50_zn_hook PF04423.9 gi|352681302|ref|YP_004891826.1| - 0.42 10.1 2.6 2.3 7.7 0.4 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif PhnA_Zn_Ribbon PF08274.7 gi|352681302|ref|YP_004891826.1| - 1.8 8.4 4.9 6.3 6.6 3.4 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon PMT_2 PF13231.1 gi|352681303|ref|YP_004891827.1| - 2.9e-08 33.7 10.1 2.9e-08 33.7 7.0 3.6 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|352681303|ref|YP_004891827.1| - 0.00046 19.6 6.9 0.00046 19.6 4.8 3.5 3 1 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2029 PF09594.5 gi|352681303|ref|YP_004891827.1| - 0.0014 18.1 34.3 0.0014 18.1 23.8 2.7 2 1 1 3 3 3 1 Protein of unknown function (DUF2029) Molybdopterin PF00384.17 gi|352681304|ref|YP_004891828.1| - 1.6e-50 172.1 0.0 1.2e-49 169.2 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|352681304|ref|YP_004891828.1| - 2.2e-11 43.5 0.0 4.4e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|352681304|ref|YP_004891828.1| - 0.0007 19.3 0.1 0.0013 18.5 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.13 gi|352681304|ref|YP_004891828.1| - 0.0093 15.8 0.0 0.036 14.0 0.0 2.0 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain HTH_23 PF13384.1 gi|352681304|ref|YP_004891828.1| - 0.05 13.2 0.0 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Fer4_11 PF13247.1 gi|352681305|ref|YP_004891829.1| - 9.3e-23 79.9 13.7 5.9e-22 77.4 7.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352681305|ref|YP_004891829.1| - 6.7e-17 61.6 24.0 3.8e-09 36.7 4.8 2.7 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681305|ref|YP_004891829.1| - 8.7e-16 57.0 30.4 1.4e-06 27.9 1.0 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|352681305|ref|YP_004891829.1| - 2.1e-14 52.4 31.3 5.5e-07 28.9 1.0 5.1 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352681305|ref|YP_004891829.1| - 3.4e-11 42.3 33.1 4.1e-06 26.3 1.1 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352681305|ref|YP_004891829.1| - 3.7e-11 43.1 27.0 4.5e-05 23.6 6.2 3.4 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352681305|ref|YP_004891829.1| - 8.1e-11 41.5 29.8 3.8e-05 23.3 8.7 3.8 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352681305|ref|YP_004891829.1| - 4.6e-07 29.7 24.6 3.6e-05 23.7 4.6 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|352681305|ref|YP_004891829.1| - 6.1e-07 29.5 44.2 0.05 14.1 5.0 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|352681305|ref|YP_004891829.1| - 6.6e-07 29.9 28.1 0.016 15.8 8.3 4.0 2 2 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|352681305|ref|YP_004891829.1| - 1e-06 28.9 24.1 0.008 16.5 7.0 3.9 2 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352681305|ref|YP_004891829.1| - 1.3e-06 28.2 36.4 0.0012 19.0 2.0 4.5 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|352681305|ref|YP_004891829.1| - 4.8e-06 26.9 18.0 0.036 14.5 0.8 4.3 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681305|ref|YP_004891829.1| - 5.2e-05 23.0 31.2 0.014 15.2 6.0 3.6 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681305|ref|YP_004891829.1| - 0.046 14.3 22.2 0.065 13.8 0.9 3.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain NrfD PF03916.9 gi|352681306|ref|YP_004891830.1| - 1.4e-17 64.1 25.2 1.4e-17 64.1 17.5 1.7 2 0 0 2 2 2 1 Polysulphide reductase, NrfD IF-2B PF01008.12 gi|352681307|ref|YP_004891831.1| - 1.6e-09 37.2 0.0 2.4e-09 36.6 0.0 1.4 1 1 0 1 1 1 1 Initiation factor 2 subunit family Lactamase_B PF00753.22 gi|352681308|ref|YP_004891832.1| - 3.2e-10 40.0 0.6 8.5e-10 38.5 0.3 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|352681308|ref|YP_004891832.1| - 0.00011 21.7 0.1 0.00016 21.2 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|352681308|ref|YP_004891832.1| - 0.0097 15.6 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Amidohydro_1 PF01979.15 gi|352681309|ref|YP_004891833.1| - 0.01 15.4 0.0 0.037 13.6 0.0 1.8 1 1 1 2 2 2 0 Amidohydrolase family PseudoU_synth_1 PF01416.15 gi|352681310|ref|YP_004891834.1| - 4.2e-22 78.5 0.0 1.4e-15 57.5 0.0 3.1 2 1 0 2 2 2 2 tRNA pseudouridine synthase DUF478 PF04334.7 gi|352681310|ref|YP_004891834.1| - 0.12 12.2 0.8 1.7 8.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF478) TOBE PF03459.12 gi|352681312|ref|YP_004891836.1| - 0.0037 17.3 1.4 1.9 8.6 0.0 3.1 3 0 0 3 3 3 1 TOBE domain Molydop_binding PF01568.16 gi|352681312|ref|YP_004891836.1| - 0.0041 16.9 0.0 0.0073 16.1 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain SAP PF02037.22 gi|352681312|ref|YP_004891836.1| - 0.098 12.1 0.6 14 5.3 0.0 3.3 3 0 0 3 3 3 0 SAP domain SBP_bac_5 PF00496.17 gi|352681313|ref|YP_004891837.1| - 1.5e-89 300.4 0.8 2e-89 300.0 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SpoIIIAH PF12685.2 gi|352681313|ref|YP_004891837.1| - 0.079 12.4 0.3 3.4 7.1 0.1 2.2 2 0 0 2 2 2 0 SpoIIIAH-like protein DUF3357 PF11837.3 gi|352681313|ref|YP_004891837.1| - 0.08 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF1180 PF06679.7 gi|352681313|ref|YP_004891837.1| - 0.12 12.2 3.5 0.27 11.1 2.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) BPD_transp_1 PF00528.17 gi|352681314|ref|YP_004891838.1| - 1.4e-21 76.8 12.6 1.4e-21 76.8 8.7 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Cas_Csa4 PF09703.5 gi|352681314|ref|YP_004891838.1| - 0.14 11.1 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa4) BPD_transp_1 PF00528.17 gi|352681315|ref|YP_004891839.1| - 1.8e-37 128.6 16.1 1.8e-37 128.6 11.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2063 PF09836.4 gi|352681315|ref|YP_004891839.1| - 0.1 12.6 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) DUF3382 PF11862.3 gi|352681315|ref|YP_004891839.1| - 3.1 7.7 16.2 1.7 8.5 0.5 4.6 3 2 2 5 5 5 0 Domain of unknown function (DUF3382) ABC_tran PF00005.22 gi|352681316|ref|YP_004891840.1| - 1.4e-25 90.1 0.0 2e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|352681316|ref|YP_004891840.1| - 7.4e-22 77.4 0.0 1.2e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|352681316|ref|YP_004891840.1| - 2.8e-13 50.5 0.8 3.6e-08 33.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352681316|ref|YP_004891840.1| - 9e-09 34.8 0.6 1.1e-07 31.2 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681316|ref|YP_004891840.1| - 0.0001 21.7 0.0 0.00021 20.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|352681316|ref|YP_004891840.1| - 0.00066 19.7 0.4 0.0036 17.2 0.3 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|352681316|ref|YP_004891840.1| - 0.0013 18.9 0.1 0.0071 16.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|352681316|ref|YP_004891840.1| - 0.016 14.3 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|352681316|ref|YP_004891840.1| - 0.023 15.5 0.0 0.049 14.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|352681316|ref|YP_004891840.1| - 0.041 13.2 0.1 0.5 9.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|352681316|ref|YP_004891840.1| - 0.085 12.2 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|352681316|ref|YP_004891840.1| - 0.096 11.1 0.1 0.2 10.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|352681316|ref|YP_004891840.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_4 PF01902.12 gi|352681318|ref|YP_004891842.1| - 4.1e-57 193.0 0.0 4.5e-57 192.9 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region DNA_photolyase PF00875.13 gi|352681318|ref|YP_004891842.1| - 0.046 13.4 0.1 0.16 11.7 0.1 1.8 1 1 0 1 1 1 0 DNA photolyase RHH_1 PF01402.16 gi|352681318|ref|YP_004891842.1| - 0.056 13.3 0.9 15 5.6 0.0 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DSPc PF00782.15 gi|352681319|ref|YP_004891843.1| - 7.7e-10 38.4 0.0 9.5e-10 38.1 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|352681319|ref|YP_004891843.1| - 3.9e-07 29.6 0.0 4.5e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.1 gi|352681319|ref|YP_004891843.1| - 0.001 19.1 0.0 0.0013 18.8 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.7 gi|352681319|ref|YP_004891843.1| - 0.0028 17.1 0.0 0.004 16.6 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.1 gi|352681319|ref|YP_004891843.1| - 0.018 15.2 0.0 0.66 10.2 0.0 2.1 1 1 1 2 2 2 0 Tyrosine phosphatase family Glyco_trans_4_4 PF13579.1 gi|352681319|ref|YP_004891843.1| - 0.057 13.5 0.2 0.1 12.7 0.1 1.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain DUF72 PF01904.13 gi|352681320|ref|YP_004891844.1| - 1.8e-57 194.7 2.9 2.2e-57 194.4 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Aldo_ket_red PF00248.16 gi|352681321|ref|YP_004891845.1| - 5.8e-76 255.0 0.0 6.5e-76 254.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family OTCace PF00185.19 gi|352681322|ref|YP_004891846.1| - 3e-52 176.6 0.0 9.9e-50 168.4 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|352681322|ref|YP_004891846.1| - 1.3e-45 154.5 0.1 2.5e-45 153.6 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ADH_zinc_N_2 PF13602.1 gi|352681322|ref|YP_004891846.1| - 0.079 13.8 0.3 0.56 11.1 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding dehydrogenase HIT PF01230.18 gi|352681324|ref|YP_004891848.1| - 1.4e-23 83.2 0.0 2.3e-23 82.5 0.0 1.3 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|352681324|ref|YP_004891848.1| - 1.2e-14 54.4 0.4 6.9e-14 52.0 0.3 2.0 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding MaoC_dehydratas PF01575.14 gi|352681325|ref|YP_004891849.1| - 4.6e-28 97.0 0.0 5.5e-28 96.8 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|352681325|ref|YP_004891849.1| - 1.1e-07 31.6 0.0 2.1e-07 30.7 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|352681325|ref|YP_004891849.1| - 0.00076 19.5 0.3 0.0022 18.0 0.2 1.8 1 1 0 1 1 1 1 Thioesterase superfamily TP_methylase PF00590.15 gi|352681326|ref|YP_004891850.1| - 1.5e-27 96.7 0.3 1.7e-27 96.4 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF464 PF04327.7 gi|352681326|ref|YP_004891850.1| - 0.13 12.4 0.3 0.22 11.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF464) GTP_EFTU_D4 PF14578.1 gi|352681327|ref|YP_004891851.1| - 1.2e-26 92.1 4.0 1.2e-26 92.1 2.7 3.0 2 1 1 3 3 3 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.22 gi|352681327|ref|YP_004891851.1| - 1.2e-26 93.2 0.0 5.3e-26 91.2 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|352681327|ref|YP_004891851.1| - 5e-18 64.9 0.1 1.1e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|352681327|ref|YP_004891851.1| - 6.9e-14 51.7 9.3 4.5e-09 36.3 0.4 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|352681327|ref|YP_004891851.1| - 4e-05 23.5 0.0 8.6e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|352681327|ref|YP_004891851.1| - 0.00037 20.9 0.0 0.0018 18.7 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein DUF2298 PF10060.4 gi|352681328|ref|YP_004891852.1| - 0.014 14.2 11.9 0.018 13.9 8.3 1.1 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) DUF92 PF01940.11 gi|352681328|ref|YP_004891852.1| - 0.13 11.4 0.0 0.13 11.4 0.0 2.7 1 1 1 3 3 3 0 Integral membrane protein DUF92 DUF2934 PF11154.3 gi|352681328|ref|YP_004891852.1| - 0.15 11.4 0.2 0.27 10.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2934) Voltage_CLC PF00654.15 gi|352681329|ref|YP_004891853.1| - 1.8e-63 214.7 36.6 1.8e-63 214.7 25.3 1.8 1 1 1 2 2 2 2 Voltage gated chloride channel Ribosomal_S6e PF01092.14 gi|352681330|ref|YP_004891854.1| - 3.3e-25 88.1 0.0 3.9e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e AsnC_trans_reg PF01037.16 gi|352681331|ref|YP_004891855.1| - 4.9e-16 58.1 0.3 5.4e-16 58.0 0.2 1.0 1 0 0 1 1 1 1 AsnC family UbiA PF01040.13 gi|352681332|ref|YP_004891856.1| - 9.9e-28 97.0 32.0 1.1e-27 96.8 22.2 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2929 PF11151.3 gi|352681332|ref|YP_004891856.1| - 0.33 11.0 0.2 0.33 11.0 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2929) adh_short_C2 PF13561.1 gi|352681335|ref|YP_004891859.1| - 7.3e-33 114.3 0.4 8.9e-33 114.0 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|352681335|ref|YP_004891859.1| - 9e-32 110.2 3.8 1.2e-31 109.8 2.6 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|352681335|ref|YP_004891859.1| - 4.7e-10 39.4 1.3 6.3e-10 39.0 0.9 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|352681335|ref|YP_004891859.1| - 7e-05 22.3 0.4 0.00023 20.6 0.2 1.9 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.12 gi|352681335|ref|YP_004891859.1| - 0.011 16.1 4.5 0.031 14.6 0.5 2.5 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ADH_zinc_N PF00107.21 gi|352681335|ref|YP_004891859.1| - 0.047 13.2 0.4 1.2 8.7 0.1 2.5 2 1 0 2 2 2 0 Zinc-binding dehydrogenase PA PF02225.17 gi|352681335|ref|YP_004891859.1| - 0.26 11.0 1.8 5.7 6.6 0.1 2.6 3 0 0 3 3 3 0 PA domain DUF402 PF04167.8 gi|352681336|ref|YP_004891860.1| - 1.9e-19 69.2 0.1 3.1e-19 68.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|352681336|ref|YP_004891860.1| - 0.031 13.4 0.0 0.046 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease E/G family SurE PF01975.12 gi|352681337|ref|YP_004891861.1| - 1.4e-44 151.7 0.2 1.8e-44 151.4 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE MFS_1 PF07690.11 gi|352681338|ref|YP_004891862.1| - 2.8e-31 108.5 46.1 1e-22 80.3 17.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|352681338|ref|YP_004891862.1| - 7.7e-06 24.2 24.1 1e-05 23.9 16.7 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|352681338|ref|YP_004891862.1| - 1.2e-05 25.0 4.1 0.00095 18.9 0.2 3.6 3 0 0 3 3 3 2 MFS_1 like family Sugar_tr PF00083.19 gi|352681338|ref|YP_004891862.1| - 0.00088 17.9 2.1 0.00088 17.9 1.5 2.6 1 1 0 2 2 2 2 Sugar (and other) transporter Fucose_iso_C PF02952.12 gi|352681339|ref|YP_004891863.1| - 6e-11 42.0 0.0 9.1e-11 41.4 0.0 1.2 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain CstA PF02554.9 gi|352681342|ref|YP_004891866.1| - 5.5e-104 347.7 22.2 5.5e-104 347.7 15.4 2.4 1 1 1 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|352681342|ref|YP_004891866.1| - 1.9e-24 86.4 11.2 1.9e-24 86.4 7.7 3.6 5 1 0 5 5 5 1 C-terminal domain on CstA (DUF4161) DUF3981 PF13139.1 gi|352681342|ref|YP_004891866.1| - 0.32 11.0 10.4 0.045 13.7 3.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3981) ArsA_ATPase PF02374.10 gi|352681344|ref|YP_004891868.1| - 1.2e-68 231.3 0.0 1.4e-68 231.2 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|352681344|ref|YP_004891868.1| - 5.8e-18 64.9 0.2 1.1e-16 60.8 0.1 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|352681344|ref|YP_004891868.1| - 1.6e-08 34.2 0.1 2.9e-06 27.0 0.0 3.2 3 0 0 3 3 3 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|352681344|ref|YP_004891868.1| - 2.6e-06 27.4 0.0 7.1e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|352681344|ref|YP_004891868.1| - 0.00065 18.9 0.3 0.0043 16.2 0.0 2.6 4 0 0 4 4 4 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NB-ARC PF00931.17 gi|352681344|ref|YP_004891868.1| - 0.0044 15.9 0.2 0.028 13.2 0.1 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA_25 PF13481.1 gi|352681344|ref|YP_004891868.1| - 0.0077 15.6 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|352681344|ref|YP_004891868.1| - 0.016 14.3 0.0 0.039 13.0 0.0 1.7 2 0 0 2 2 2 0 VirC1 protein AAA_26 PF13500.1 gi|352681344|ref|YP_004891868.1| - 0.042 13.4 0.4 0.07 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain Thioredoxin_7 PF13899.1 gi|352681344|ref|YP_004891868.1| - 0.043 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like AAA_24 PF13479.1 gi|352681344|ref|YP_004891868.1| - 0.12 11.9 1.3 0.25 10.9 0.9 1.8 1 1 0 1 1 1 0 AAA domain YjeF_N PF03853.10 gi|352681344|ref|YP_004891868.1| - 0.16 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus Flu_NS2 PF00601.14 gi|352681344|ref|YP_004891868.1| - 0.2 11.9 1.2 0.43 10.8 0.2 2.1 2 0 0 2 2 2 0 Influenza non-structural protein (NS2) PhoH PF02562.11 gi|352681344|ref|YP_004891868.1| - 0.2 10.8 6.0 4.3 6.5 1.8 3.7 3 1 0 3 3 3 0 PhoH-like protein ArsA_ATPase PF02374.10 gi|352681345|ref|YP_004891869.1| - 4.9e-63 212.9 0.1 5.5e-63 212.8 0.1 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|352681345|ref|YP_004891869.1| - 4.2e-12 45.8 1.1 1.5e-10 40.8 0.7 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|352681345|ref|YP_004891869.1| - 4.6e-07 29.6 0.1 1.1e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|352681345|ref|YP_004891869.1| - 1e-05 25.4 0.0 3.7e-05 23.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|352681345|ref|YP_004891869.1| - 0.0076 15.4 0.0 0.018 14.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|352681345|ref|YP_004891869.1| - 0.012 15.2 0.0 0.67 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|352681345|ref|YP_004891869.1| - 0.016 14.5 0.1 0.06 12.7 0.0 1.8 2 0 0 2 2 2 0 YhjQ protein PIF1 PF05970.9 gi|352681345|ref|YP_004891869.1| - 0.037 12.9 0.1 0.064 12.1 0.1 1.4 1 0 0 1 1 1 0 PIF1-like helicase AAA_19 PF13245.1 gi|352681345|ref|YP_004891869.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain Methyltransf_23 PF13489.1 gi|352681348|ref|YP_004891872.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Thioredoxin_3 PF13192.1 gi|352681349|ref|YP_004891873.1| - 0.0014 18.3 0.0 0.56 10.0 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Radical_SAM PF04055.16 gi|352681350|ref|YP_004891874.1| - 6.3e-25 88.2 0.0 1.4e-23 83.9 0.0 2.3 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|352681350|ref|YP_004891874.1| - 4.7e-09 36.4 0.0 1.2e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|352681350|ref|YP_004891874.1| - 3.3e-08 33.7 0.0 6.5e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|352681350|ref|YP_004891874.1| - 1.2e-07 31.8 0.0 2.5e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|352681350|ref|YP_004891874.1| - 1.8e-07 30.6 0.0 0.00012 21.4 0.0 2.3 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Peptidase_M20 PF01546.23 gi|352681351|ref|YP_004891875.1| - 4e-22 78.6 0.0 4.8e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|352681351|ref|YP_004891875.1| - 1.4e-12 47.3 0.0 2.5e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|352681351|ref|YP_004891875.1| - 0.0042 16.8 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 Semialdhyde_dh PF01118.19 gi|352681353|ref|YP_004891877.1| - 1.7e-32 112.2 0.0 2.7e-32 111.6 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|352681353|ref|YP_004891877.1| - 1.5e-11 44.4 0.0 3.1e-11 43.4 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|352681353|ref|YP_004891877.1| - 0.0026 18.2 0.0 0.0071 16.8 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|352681353|ref|YP_004891877.1| - 0.0069 16.2 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|352681353|ref|YP_004891877.1| - 0.14 11.1 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase AA_kinase PF00696.23 gi|352681354|ref|YP_004891878.1| - 1e-28 100.5 2.1 1.2e-28 100.2 1.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family ThiC PF01964.13 gi|352681354|ref|YP_004891878.1| - 0.1 11.0 0.1 0.69 8.3 0.0 1.9 2 0 0 2 2 2 0 ThiC family HypA PF01155.14 gi|352681355|ref|YP_004891879.1| - 4.1e-06 26.4 0.4 4.5e-06 26.3 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|352681355|ref|YP_004891879.1| - 0.00052 19.9 0.2 0.00077 19.3 0.1 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|352681355|ref|YP_004891879.1| - 0.00081 19.0 1.8 0.0021 17.7 1.3 1.6 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|352681355|ref|YP_004891879.1| - 0.003 16.8 5.1 0.0095 15.2 3.1 2.0 1 1 1 2 2 2 2 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|352681355|ref|YP_004891879.1| - 0.0038 16.7 0.5 0.25 10.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|352681355|ref|YP_004891879.1| - 0.0041 16.7 1.5 1.6 8.5 0.0 2.5 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|352681355|ref|YP_004891879.1| - 0.0062 16.3 0.5 0.01 15.6 0.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon ADK_lid PF05191.9 gi|352681355|ref|YP_004891879.1| - 0.0093 15.6 1.2 2 8.1 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase, active site lid zf-UDP PF14569.1 gi|352681355|ref|YP_004891879.1| - 0.012 15.3 0.7 0.37 10.5 0.0 2.0 1 1 1 2 2 2 0 Zinc-binding RING-finger PhnA_Zn_Ribbon PF08274.7 gi|352681355|ref|YP_004891879.1| - 0.012 15.3 0.6 0.027 14.2 0.4 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|352681355|ref|YP_004891879.1| - 0.013 15.1 1.2 0.42 10.3 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|352681355|ref|YP_004891879.1| - 0.024 14.0 4.2 0.34 10.3 2.9 2.1 1 1 0 1 1 1 0 HypF finger zf-ribbon_3 PF13248.1 gi|352681355|ref|YP_004891879.1| - 0.049 12.8 0.4 2.7 7.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|352681355|ref|YP_004891879.1| - 0.057 12.9 0.4 0.057 12.9 0.3 1.9 2 0 0 2 2 2 0 CSL zinc finger Nudix_N_2 PF14803.1 gi|352681355|ref|YP_004891879.1| - 0.058 13.1 1.0 7.4 6.3 0.0 2.4 2 1 0 2 2 2 0 Nudix N-terminal DUF1451 PF07295.6 gi|352681355|ref|YP_004891879.1| - 0.063 13.0 0.2 0.094 12.4 0.1 1.3 2 0 0 2 2 1 0 Protein of unknown function (DUF1451) T4_baseplate PF12322.3 gi|352681355|ref|YP_004891879.1| - 0.077 12.2 0.3 3.7 6.7 0.0 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein zinc_ribbon_2 PF13240.1 gi|352681355|ref|YP_004891879.1| - 0.085 12.3 2.8 1.8 8.1 1.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|352681355|ref|YP_004891879.1| - 0.093 12.4 0.6 0.16 11.6 0.4 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|352681355|ref|YP_004891879.1| - 0.11 12.6 0.5 1.5 8.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-CHCC PF10276.4 gi|352681355|ref|YP_004891879.1| - 0.11 12.3 0.2 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger domain DUF2072 PF09845.4 gi|352681355|ref|YP_004891879.1| - 0.12 12.3 0.2 0.14 12.0 0.2 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-IS66 PF13005.2 gi|352681355|ref|YP_004891879.1| - 0.14 12.1 0.7 3.1 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.8 gi|352681355|ref|YP_004891879.1| - 0.17 11.4 2.3 0.78 9.2 1.6 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF678 PF05077.7 gi|352681355|ref|YP_004891879.1| - 0.17 11.8 0.5 9.9 6.2 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF678) DUF3797 PF12677.2 gi|352681355|ref|YP_004891879.1| - 0.19 11.3 1.3 2.7 7.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1595 PF12760.2 gi|352681355|ref|YP_004891879.1| - 0.22 11.3 2.7 1.9 8.3 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|352681355|ref|YP_004891879.1| - 0.23 11.0 1.0 3.9 7.0 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_3 PF13878.1 gi|352681355|ref|YP_004891879.1| - 0.25 10.9 1.0 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO UPF0547 PF10571.4 gi|352681355|ref|YP_004891879.1| - 0.3 10.7 2.7 2.2 8.0 1.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-HIT PF04438.11 gi|352681355|ref|YP_004891879.1| - 0.49 10.0 5.7 2.6 7.7 1.0 2.1 2 0 0 2 2 2 0 HIT zinc finger A2L_zn_ribbon PF08792.5 gi|352681355|ref|YP_004891879.1| - 0.75 9.3 3.1 5.4 6.5 2.2 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Arginosuc_synth PF00764.14 gi|352681356|ref|YP_004891880.1| - 2.3e-150 500.9 0.0 2.9e-150 500.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Auto_anti-p27 PF06677.7 gi|352681357|ref|YP_004891881.1| - 0.0018 17.9 3.0 0.44 10.3 0.1 2.2 2 0 0 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sgf11 PF08209.6 gi|352681357|ref|YP_004891881.1| - 0.0046 16.2 0.5 0.0046 16.2 0.3 2.9 3 0 0 3 3 3 1 Sgf11 (transcriptional regulation protein) DUF2296 PF10058.4 gi|352681357|ref|YP_004891881.1| - 0.0086 15.8 3.7 0.25 11.0 0.9 2.1 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) LIM PF00412.17 gi|352681357|ref|YP_004891881.1| - 0.0091 16.0 2.4 0.0098 15.9 1.7 1.1 1 0 0 1 1 1 1 LIM domain DZR PF12773.2 gi|352681357|ref|YP_004891881.1| - 0.013 15.3 5.1 0.71 9.7 3.5 2.2 1 1 0 1 1 1 0 Double zinc ribbon IBR PF01485.16 gi|352681357|ref|YP_004891881.1| - 0.022 14.6 3.0 0.027 14.3 2.1 1.1 1 0 0 1 1 1 0 IBR domain Ribosomal_L32p PF01783.18 gi|352681357|ref|YP_004891881.1| - 0.031 14.4 3.8 0.99 9.6 1.1 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-FPG_IleRS PF06827.9 gi|352681357|ref|YP_004891881.1| - 0.044 13.4 4.8 2.2 8.0 0.4 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|352681357|ref|YP_004891881.1| - 0.091 12.0 5.2 2.6 7.4 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-nanos PF05741.8 gi|352681357|ref|YP_004891881.1| - 0.11 12.4 2.7 3.5 7.6 0.1 2.2 2 0 0 2 2 2 0 Nanos RNA binding domain CpXC PF14353.1 gi|352681357|ref|YP_004891881.1| - 0.13 12.1 4.0 3.1 7.7 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.1 gi|352681357|ref|YP_004891881.1| - 0.15 11.6 7.7 1.7 8.2 0.8 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|352681357|ref|YP_004891881.1| - 0.19 11.8 6.8 1.9 8.6 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) GFA PF04828.9 gi|352681357|ref|YP_004891881.1| - 0.2 11.5 3.6 3.1 7.8 0.5 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|352681357|ref|YP_004891881.1| - 0.21 10.8 10.0 0.27 10.4 1.3 2.5 2 1 0 2 2 2 0 zinc-ribbon domain PHD PF00628.24 gi|352681357|ref|YP_004891881.1| - 0.31 10.7 3.5 0.43 10.3 2.5 1.3 1 1 0 1 1 1 0 PHD-finger Zn_Tnp_IS1595 PF12760.2 gi|352681357|ref|YP_004891881.1| - 0.34 10.7 9.9 1.3 8.8 0.6 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2256 PF10013.4 gi|352681357|ref|YP_004891881.1| - 0.37 10.5 7.9 0.99 9.2 5.5 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-HYPF PF07503.7 gi|352681357|ref|YP_004891881.1| - 0.4 10.1 7.7 4.7 6.7 5.4 2.1 1 1 0 1 1 1 0 HypF finger zf-Mss51 PF13824.1 gi|352681357|ref|YP_004891881.1| - 0.51 10.2 4.9 1.3 8.9 3.4 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.11 gi|352681357|ref|YP_004891881.1| - 0.72 9.5 8.3 0.85 9.3 0.5 2.3 2 0 0 2 2 2 0 HIT zinc finger zf-NADH-PPase PF09297.6 gi|352681357|ref|YP_004891881.1| - 0.74 9.3 4.3 8.9 5.9 0.1 2.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|352681357|ref|YP_004891881.1| - 1 9.2 4.8 1.9 8.3 3.3 1.5 1 1 0 1 1 1 0 zinc-ribbons Methyltransf_13 PF08421.6 gi|352681357|ref|YP_004891881.1| - 1.1 8.8 5.1 2.1 7.9 0.6 2.0 1 1 0 2 2 2 0 Putative zinc binding domain Zn-ribbon_8 PF09723.5 gi|352681357|ref|YP_004891881.1| - 1.1 9.2 7.5 9.6 6.2 0.2 2.5 2 1 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|352681357|ref|YP_004891881.1| - 1.1 9.1 7.4 2 8.3 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin Rpr2 PF04032.11 gi|352681357|ref|YP_004891881.1| - 1.4 8.8 5.9 1.8 8.4 4.1 1.2 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-TFIIB PF13453.1 gi|352681357|ref|YP_004891881.1| - 1.6 7.9 6.6 11 5.2 0.2 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-IS66 PF13005.2 gi|352681357|ref|YP_004891881.1| - 1.9 8.4 8.4 3 7.8 1.7 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RING_3 PF14369.1 gi|352681357|ref|YP_004891881.1| - 5.9 6.9 8.6 7.2 6.7 0.3 2.3 1 1 1 2 2 2 0 zinc-finger DUF329 PF03884.9 gi|352681357|ref|YP_004891881.1| - 7.3 6.2 11.2 67 3.1 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Iso_dh PF00180.15 gi|352681359|ref|YP_004891883.1| - 1.2e-93 313.8 0.3 1.4e-93 313.6 0.2 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|352681359|ref|YP_004891883.1| - 0.03 13.5 0.1 0.054 12.6 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA DUF328 PF03883.9 gi|352681360|ref|YP_004891884.1| - 0.075 12.2 0.0 0.093 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF328) HMGL-like PF00682.14 gi|352681361|ref|YP_004891885.1| - 5.3e-67 225.9 1.4 4.3e-66 222.9 0.8 2.1 2 0 0 2 2 2 1 HMGL-like AsnC_trans_reg PF01037.16 gi|352681361|ref|YP_004891885.1| - 6.3e-15 54.6 0.6 2.2e-14 52.8 0.4 2.0 1 0 0 1 1 1 1 AsnC family ACT_4 PF13291.1 gi|352681361|ref|YP_004891885.1| - 0.022 15.1 1.7 0.14 12.5 0.4 2.8 2 1 1 3 3 3 0 ACT domain DUF881 PF05949.7 gi|352681361|ref|YP_004891885.1| - 0.043 13.2 0.4 2.6 7.4 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF881) DUF1717 PF05414.6 gi|352681361|ref|YP_004891885.1| - 0.086 13.2 0.4 1.9 8.9 0.0 2.8 3 0 0 3 3 3 0 Viral domain of unknown function (DUF1717) TRAPP PF04051.11 gi|352681361|ref|YP_004891885.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Transport protein particle (TRAPP) component DUF3782 PF12644.2 gi|352681361|ref|YP_004891885.1| - 0.16 11.7 0.2 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) AlkA_N PF06029.6 gi|352681361|ref|YP_004891885.1| - 0.44 10.6 3.0 1.5 8.8 0.0 2.8 3 0 0 3 3 3 0 AlkA N-terminal domain Aconitase_C PF00694.14 gi|352681362|ref|YP_004891886.1| - 1.5e-17 63.9 0.0 1.9e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|352681362|ref|YP_004891886.1| - 0.0035 16.7 0.3 0.13 11.6 0.2 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus TPP_enzyme_N PF02776.13 gi|352681363|ref|YP_004891887.1| - 9.6e-52 174.9 0.6 3.1e-51 173.2 0.2 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|352681363|ref|YP_004891887.1| - 1.3e-45 154.4 0.1 1.9e-44 150.7 0.2 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|352681363|ref|YP_004891887.1| - 2.3e-42 144.1 0.0 3.3e-41 140.4 0.0 2.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TIR_2 PF13676.1 gi|352681363|ref|YP_004891887.1| - 0.0089 16.1 0.0 0.065 13.3 0.0 2.3 2 0 0 2 2 2 1 TIR domain HGD-D PF06050.8 gi|352681363|ref|YP_004891887.1| - 0.029 13.1 0.0 0.52 9.0 0.0 2.4 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component POR_N PF01855.14 gi|352681363|ref|YP_004891887.1| - 0.046 13.2 1.2 0.12 11.8 0.8 1.6 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Molybdopterin PF00384.17 gi|352681363|ref|YP_004891887.1| - 0.06 12.0 0.0 0.086 11.5 0.0 1.1 1 0 0 1 1 1 0 Molybdopterin oxidoreductase ACT_5 PF13710.1 gi|352681364|ref|YP_004891888.1| - 3.7e-13 49.0 0.1 4.4e-13 48.8 0.1 1.1 1 0 0 1 1 1 1 ACT domain Acylphosphatase PF00708.13 gi|352681364|ref|YP_004891888.1| - 0.062 13.3 0.0 0.072 13.2 0.0 1.3 1 1 0 1 1 1 0 Acylphosphatase IlvN PF07991.7 gi|352681365|ref|YP_004891889.1| - 1.5e-73 245.5 0.1 3.2e-73 244.5 0.0 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|352681365|ref|YP_004891889.1| - 2.4e-44 150.7 0.0 3.2e-44 150.3 0.0 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|352681365|ref|YP_004891889.1| - 1.6e-07 31.6 0.0 3.9e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|352681365|ref|YP_004891889.1| - 2.8e-07 29.8 0.0 5.1e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|352681365|ref|YP_004891889.1| - 1.2e-05 25.1 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|352681365|ref|YP_004891889.1| - 7.3e-05 22.6 0.0 0.00015 21.6 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_10 PF13460.1 gi|352681365|ref|YP_004891889.1| - 0.0009 19.2 0.1 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|352681365|ref|YP_004891889.1| - 0.076 13.1 0.0 0.22 11.6 0.0 1.7 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|352681365|ref|YP_004891889.1| - 0.084 12.3 0.1 0.19 11.1 0.0 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Aminotran_4 PF01063.14 gi|352681366|ref|YP_004891890.1| - 4.5e-51 173.5 0.0 5.3e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV HMGL-like PF00682.14 gi|352681367|ref|YP_004891891.1| - 2.4e-78 263.0 4.4 3.2e-78 262.6 3.1 1.2 1 0 0 1 1 1 1 HMGL-like Glyco_hydro_97 PF10566.4 gi|352681367|ref|YP_004891891.1| - 0.00046 19.3 0.1 0.00072 18.7 0.1 1.2 1 0 0 1 1 1 1 Glycoside hydrolase 97 AP_endonuc_2 PF01261.19 gi|352681367|ref|YP_004891891.1| - 0.0037 16.5 2.0 0.014 14.7 1.4 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel PdxJ PF03740.8 gi|352681367|ref|YP_004891891.1| - 0.015 14.4 0.4 0.033 13.3 0.2 1.5 1 1 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ F420_ligase PF01996.11 gi|352681367|ref|YP_004891891.1| - 0.035 13.1 0.2 0.052 12.6 0.1 1.3 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase PTE PF02126.13 gi|352681367|ref|YP_004891891.1| - 0.053 12.5 0.3 5.2 5.9 0.1 2.2 1 1 1 2 2 2 0 Phosphotriesterase family Amidohydro_4 PF13147.1 gi|352681367|ref|YP_004891891.1| - 0.7 9.8 10.3 1 9.3 5.2 2.3 2 1 0 2 2 2 0 Amidohydrolase Cyclase PF04199.8 gi|352681368|ref|YP_004891892.1| - 1.7e-31 109.2 0.0 2.1e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Aconitase PF00330.15 gi|352681369|ref|YP_004891893.1| - 2.3e-61 207.7 1.7 9e-37 126.6 0.0 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|352681369|ref|YP_004891893.1| - 0.0046 15.5 0.0 0.0075 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CoA_transf_3 PF02515.12 gi|352681370|ref|YP_004891894.1| - 1.5e-54 184.1 0.0 2.1e-54 183.6 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III CoA_transf_3 PF02515.12 gi|352681371|ref|YP_004891895.1| - 7.6e-31 106.8 0.1 9.9e-31 106.4 0.1 1.1 1 0 0 1 1 1 1 CoA-transferase family III CoA_trans PF01144.18 gi|352681372|ref|YP_004891896.1| - 5.3e-39 133.6 0.2 4.8e-34 117.4 0.0 2.7 2 1 0 2 2 2 2 Coenzyme A transferase Polysacc_synt_3 PF13440.1 gi|352681373|ref|YP_004891897.1| - 0.00013 21.4 30.0 0.00013 21.4 20.8 2.7 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein PALP PF00291.20 gi|352681374|ref|YP_004891898.1| - 9e-19 67.8 4.6 7.2e-17 61.5 3.2 2.8 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TrmB PF01978.14 gi|352681374|ref|YP_004891898.1| - 0.00078 19.1 0.3 0.015 15.0 0.0 2.7 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|352681374|ref|YP_004891898.1| - 0.03 14.4 0.0 0.071 13.2 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor PadR PF03551.9 gi|352681374|ref|YP_004891898.1| - 0.058 13.1 0.2 1.6 8.5 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family zf-ribbon_3 PF13248.1 gi|352681374|ref|YP_004891898.1| - 2.1 7.6 4.3 2.5 7.3 0.6 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Bac_Ubq_Cox PF01654.12 gi|352681375|ref|YP_004891899.1| - 2.7e-63 213.9 29.0 5.9e-54 183.1 15.4 2.0 1 1 1 2 2 2 2 Bacterial Cytochrome Ubiquinol Oxidase Bac_Ubq_Cox PF01654.12 gi|352681376|ref|YP_004891900.1| - 5.2e-14 51.5 12.0 5.2e-14 51.5 8.3 2.2 2 1 0 2 2 2 1 Bacterial Cytochrome Ubiquinol Oxidase DUF2842 PF11003.3 gi|352681376|ref|YP_004891900.1| - 0.03 14.1 2.9 0.03 14.1 2.0 4.1 5 0 0 5 5 5 0 Protein of unknown function (DUF2842) Rotavirus_VP3 PF06929.6 gi|352681376|ref|YP_004891900.1| - 0.19 9.5 0.6 0.26 9.1 0.4 1.1 1 0 0 1 1 1 0 Rotavirus VP3 protein Thermopsin PF05317.6 gi|352681377|ref|YP_004891901.1| - 1.8e-26 92.6 0.0 7e-26 90.7 0.0 1.8 1 1 0 1 1 1 1 Thermopsin AhpC-TSA PF00578.16 gi|352681378|ref|YP_004891902.1| - 2.3e-27 95.1 0.0 2.9e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|352681378|ref|YP_004891902.1| - 2.9e-19 68.4 1.1 5.2e-19 67.6 0.8 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|352681378|ref|YP_004891902.1| - 6e-12 45.3 0.0 7.6e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin Ykof PF07615.6 gi|352681378|ref|YP_004891902.1| - 0.14 12.2 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 YKOF-related Family VIT1 PF01988.14 gi|352681379|ref|YP_004891903.1| - 1.7e-18 66.8 29.0 3.9e-10 39.5 7.1 2.9 2 1 1 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|352681379|ref|YP_004891903.1| - 8.3e-10 39.1 3.6 1.6e-09 38.1 2.5 1.5 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.8 gi|352681379|ref|YP_004891903.1| - 8.4e-05 22.1 0.4 0.0023 17.4 0.1 2.3 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.1 gi|352681379|ref|YP_004891903.1| - 0.039 13.8 0.2 0.039 13.8 0.1 2.2 2 1 0 2 2 2 0 Ferritin-like domain MpPF26 PF07666.6 gi|352681379|ref|YP_004891903.1| - 0.45 10.3 3.8 3 7.7 0.2 2.6 2 1 0 2 2 2 0 M penetrans paralogue family 26 Ribosomal_S30 PF04758.9 gi|352681384|ref|YP_004891908.1| - 3.9e-11 42.5 1.8 4.9e-11 42.1 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 HD PF01966.17 gi|352681385|ref|YP_004891909.1| - 0.066 13.2 0.0 0.073 13.0 0.0 1.1 1 0 0 1 1 1 0 HD domain Acetyltransf_1 PF00583.19 gi|352681386|ref|YP_004891910.1| - 4.5e-17 61.8 0.2 9.2e-17 60.8 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|352681386|ref|YP_004891910.1| - 7.1e-09 35.9 0.2 1.2e-08 35.1 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|352681386|ref|YP_004891910.1| - 9.9e-08 32.1 0.0 3.1e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|352681386|ref|YP_004891910.1| - 4.2e-06 26.6 0.1 2e-05 24.4 0.1 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|352681386|ref|YP_004891910.1| - 3.4e-05 23.5 0.0 5.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|352681386|ref|YP_004891910.1| - 3.6e-05 23.8 0.0 7.1e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|352681386|ref|YP_004891910.1| - 0.00023 21.1 0.0 0.00044 20.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|352681386|ref|YP_004891910.1| - 0.00048 19.9 0.1 0.00085 19.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|352681386|ref|YP_004891910.1| - 0.021 14.6 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3244 PF11589.3 gi|352681387|ref|YP_004891911.1| - 0.07 12.8 2.2 2.7 7.7 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3244) Tetraspannin PF00335.15 gi|352681387|ref|YP_004891911.1| - 0.2 10.9 5.9 1.1 8.4 4.1 1.9 1 1 0 1 1 1 0 Tetraspanin family TarH PF02203.10 gi|352681387|ref|YP_004891911.1| - 0.27 11.0 3.0 0.44 10.3 2.1 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue MscS_TM PF12794.2 gi|352681387|ref|YP_004891911.1| - 5 5.6 9.2 0.23 10.0 1.0 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 DUF4342 PF14242.1 gi|352681387|ref|YP_004891911.1| - 8.9 6.1 11.7 0.14 11.9 0.4 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4342) SBP_bac_5 PF00496.17 gi|352681388|ref|YP_004891912.1| - 1.6e-12 46.9 11.3 1e-10 41.0 0.2 3.9 2 2 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|352681388|ref|YP_004891912.1| - 0.052 13.1 7.9 0.08 12.5 5.5 1.2 1 0 0 1 1 1 0 Rifin/stevor family BatD PF13584.1 gi|352681388|ref|YP_004891912.1| - 0.3 9.6 9.0 2 6.9 6.2 2.1 1 1 0 1 1 1 0 Oxygen tolerance TMEM154 PF15102.1 gi|352681388|ref|YP_004891912.1| - 0.77 9.4 11.8 1.5 8.5 8.2 1.5 1 0 0 1 1 1 0 TMEM154 protein family BPD_transp_1 PF00528.17 gi|352681389|ref|YP_004891913.1| - 1.8e-24 86.3 15.7 1.8e-24 86.3 10.9 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|352681390|ref|YP_004891914.1| - 1.4e-22 80.1 20.0 1.4e-22 80.1 13.9 2.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|352681391|ref|YP_004891915.1| - 1e-31 110.0 0.0 1.4e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|352681391|ref|YP_004891915.1| - 1.4e-19 70.2 0.1 2.5e-19 69.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|352681391|ref|YP_004891915.1| - 7.4e-12 45.8 0.1 4e-08 33.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352681391|ref|YP_004891915.1| - 2.7e-06 26.7 0.2 0.00088 18.5 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|352681391|ref|YP_004891915.1| - 3.7e-05 24.0 0.0 0.00014 22.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|352681391|ref|YP_004891915.1| - 0.00017 21.7 1.4 0.0065 16.6 1.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681391|ref|YP_004891915.1| - 0.00018 21.5 0.1 0.00026 21.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|352681391|ref|YP_004891915.1| - 0.0007 19.3 0.1 0.0017 18.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|352681391|ref|YP_004891915.1| - 0.0007 19.4 0.3 0.0013 18.6 0.1 1.5 2 0 0 2 2 1 1 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|352681391|ref|YP_004891915.1| - 0.00085 18.8 0.1 0.0015 18.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|352681391|ref|YP_004891915.1| - 0.0014 18.7 0.0 0.057 13.4 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|352681391|ref|YP_004891915.1| - 0.0015 18.1 0.3 0.0055 16.3 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.2 gi|352681391|ref|YP_004891915.1| - 0.0023 17.4 0.1 0.0095 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|352681391|ref|YP_004891915.1| - 0.0031 16.6 0.0 0.49 9.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|352681391|ref|YP_004891915.1| - 0.0033 16.0 0.6 0.04 12.4 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|352681391|ref|YP_004891915.1| - 0.0035 17.7 0.0 0.0054 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352681391|ref|YP_004891915.1| - 0.0046 17.7 0.0 0.013 16.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|352681391|ref|YP_004891915.1| - 0.0066 15.8 0.3 0.64 9.4 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein ATP-synt_ab PF00006.20 gi|352681391|ref|YP_004891915.1| - 0.013 15.0 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|352681391|ref|YP_004891915.1| - 0.018 14.4 0.0 0.039 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|352681391|ref|YP_004891915.1| - 0.021 14.0 0.0 0.037 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|352681391|ref|YP_004891915.1| - 0.026 14.4 0.1 0.096 12.6 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DEAD PF00270.24 gi|352681391|ref|YP_004891915.1| - 0.027 13.9 0.0 0.056 12.9 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase MobB PF03205.9 gi|352681391|ref|YP_004891915.1| - 0.034 13.8 0.1 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|352681391|ref|YP_004891915.1| - 0.036 14.0 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|352681391|ref|YP_004891915.1| - 0.037 13.4 0.1 13 5.1 0.0 2.7 2 1 1 3 3 3 0 SRP54-type protein, GTPase domain AAA_13 PF13166.1 gi|352681391|ref|YP_004891915.1| - 0.04 12.3 0.0 3.7 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|352681391|ref|YP_004891915.1| - 0.048 13.2 0.0 0.11 12.0 0.0 1.5 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|352681391|ref|YP_004891915.1| - 0.049 13.7 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|352681391|ref|YP_004891915.1| - 0.059 12.4 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.21 gi|352681391|ref|YP_004891915.1| - 0.071 12.5 0.4 0.14 11.6 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain DNA_primase_lrg PF04104.9 gi|352681391|ref|YP_004891915.1| - 0.072 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit NB-ARC PF00931.17 gi|352681391|ref|YP_004891915.1| - 0.074 11.8 0.1 0.15 10.9 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.15 gi|352681391|ref|YP_004891915.1| - 0.089 12.4 0.0 1.3 8.6 0.0 2.5 3 0 0 3 3 2 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|352681391|ref|YP_004891915.1| - 0.095 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|352681391|ref|YP_004891915.1| - 0.098 12.1 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family KKLCAg1 PF15204.1 gi|352681391|ref|YP_004891915.1| - 0.13 12.2 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 Kita-kyushu lung cancer antigen 1 ABC_tran PF00005.22 gi|352681392|ref|YP_004891916.1| - 2.9e-32 111.8 0.0 3.8e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|352681392|ref|YP_004891916.1| - 1.3e-21 76.7 1.7 1.3e-21 76.7 1.2 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|352681392|ref|YP_004891916.1| - 2.5e-07 30.9 0.1 0.0021 18.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|352681392|ref|YP_004891916.1| - 0.00019 20.9 0.0 0.098 12.0 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|352681392|ref|YP_004891916.1| - 0.00032 20.1 0.1 0.00058 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|352681392|ref|YP_004891916.1| - 0.00045 20.3 0.5 0.0045 17.1 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681392|ref|YP_004891916.1| - 0.00046 20.2 0.0 0.00087 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|352681392|ref|YP_004891916.1| - 0.00091 18.5 0.1 0.033 13.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|352681392|ref|YP_004891916.1| - 0.0019 17.9 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|352681392|ref|YP_004891916.1| - 0.0031 16.9 0.0 0.0063 16.0 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_13 PF13166.1 gi|352681392|ref|YP_004891916.1| - 0.0068 14.9 0.3 0.089 11.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|352681392|ref|YP_004891916.1| - 0.012 15.2 0.1 0.022 14.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|352681392|ref|YP_004891916.1| - 0.02 14.2 0.1 0.18 11.1 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|352681392|ref|YP_004891916.1| - 0.026 14.8 0.4 0.056 13.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|352681392|ref|YP_004891916.1| - 0.078 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|352681392|ref|YP_004891916.1| - 0.083 11.7 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF87 PF01935.12 gi|352681392|ref|YP_004891916.1| - 0.085 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 KaiC PF06745.8 gi|352681392|ref|YP_004891916.1| - 0.086 11.9 0.1 0.19 10.8 0.0 1.5 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.1 gi|352681392|ref|YP_004891916.1| - 0.087 12.6 0.0 0.23 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.7 gi|352681392|ref|YP_004891916.1| - 0.11 11.8 0.7 0.87 8.8 0.0 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_30 PF13604.1 gi|352681392|ref|YP_004891916.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.9 gi|352681392|ref|YP_004891916.1| - 0.15 11.0 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase APS_kinase PF01583.15 gi|352681392|ref|YP_004891916.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.9 gi|352681392|ref|YP_004891916.1| - 0.17 11.6 0.1 0.69 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|352681392|ref|YP_004891916.1| - 0.18 12.6 0.3 0.37 11.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain CxxCxxCC PF03692.10 gi|352681393|ref|YP_004891917.1| - 6.2e-13 49.0 0.0 9.4e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Ribosomal_S30 PF04758.9 gi|352681394|ref|YP_004891918.1| - 3.9e-11 42.5 1.8 4.9e-11 42.1 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 GCD14 PF08704.5 gi|352681395|ref|YP_004891919.1| - 3.4e-34 118.4 0.0 4.3e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|352681395|ref|YP_004891919.1| - 7.2e-08 32.9 0.0 1.3e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|352681395|ref|YP_004891919.1| - 7.3e-08 32.1 0.0 9.8e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|352681395|ref|YP_004891919.1| - 3.1e-07 30.0 0.0 4e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|352681395|ref|YP_004891919.1| - 5e-07 29.7 1.0 2.3e-06 27.6 0.7 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|352681395|ref|YP_004891919.1| - 0.0031 16.5 0.0 0.0069 15.4 0.0 1.5 2 0 0 2 2 2 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|352681395|ref|YP_004891919.1| - 0.0034 18.1 0.2 0.011 16.5 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352681395|ref|YP_004891919.1| - 0.015 15.7 0.0 0.035 14.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|352681395|ref|YP_004891919.1| - 0.038 12.9 0.0 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|352681395|ref|YP_004891919.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 tRNA-synt_2b PF00587.20 gi|352681396|ref|YP_004891920.1| - 9e-24 83.9 0.7 1.5e-23 83.2 0.5 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|352681396|ref|YP_004891920.1| - 6.5e-23 80.5 0.2 1.3e-22 79.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|352681396|ref|YP_004891920.1| - 2.6e-09 36.8 0.0 5.2e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Ribosomal_S26e PF01283.14 gi|352681397|ref|YP_004891921.1| - 1.7e-32 112.0 0.9 1.8e-32 111.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.12 gi|352681397|ref|YP_004891921.1| - 0.016 14.9 0.4 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger C1_1 PF00130.17 gi|352681397|ref|YP_004891921.1| - 0.035 13.8 0.2 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) UPF0547 PF10571.4 gi|352681397|ref|YP_004891921.1| - 0.11 12.1 0.1 0.23 11.1 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Methyltrn_RNA_2 PF04013.7 gi|352681398|ref|YP_004891922.1| - 1.9e-07 30.8 0.0 3.3e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase CDP-OH_P_transf PF01066.16 gi|352681399|ref|YP_004891923.1| - 5.1e-12 45.9 4.4 5.1e-12 45.9 3.1 1.7 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF3382 PF11862.3 gi|352681399|ref|YP_004891923.1| - 3.3 7.6 6.3 18 5.2 0.6 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3382) DUF2286 PF10051.4 gi|352681400|ref|YP_004891924.1| - 8.8e-42 142.0 2.4 9.6e-42 141.9 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DNA_pol_B PF00136.16 gi|352681402|ref|YP_004891926.1| - 1.1e-79 268.4 0.1 1.5e-79 267.9 0.1 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|352681402|ref|YP_004891926.1| - 4.4e-26 91.5 0.0 7.4e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|352681402|ref|YP_004891926.1| - 6.3e-06 25.8 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|352681402|ref|YP_004891926.1| - 1.4e-05 24.9 0.0 4.6e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 RNase_H superfamily Robl_LC7 PF03259.12 gi|352681403|ref|YP_004891927.1| - 0.056 13.0 0.0 0.076 12.5 0.0 1.2 1 0 0 1 1 1 0 Roadblock/LC7 domain HMG-CoA_red PF00368.13 gi|352681404|ref|YP_004891928.1| - 7.6e-150 498.7 0.1 8.6e-150 498.5 0.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Thiolase_C PF02803.13 gi|352681405|ref|YP_004891929.1| - 8e-06 25.2 0.0 1.7e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|352681405|ref|YP_004891929.1| - 0.00091 18.8 0.5 0.068 12.8 0.1 2.6 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|352681405|ref|YP_004891929.1| - 0.041 13.7 1.8 0.14 11.9 0.0 2.7 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|352681406|ref|YP_004891930.1| - 5.1e-12 45.8 0.1 6.7e-12 45.4 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|352681406|ref|YP_004891930.1| - 8.8e-09 35.0 0.3 1.4e-08 34.4 0.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) YhfH PF14149.1 gi|352681406|ref|YP_004891930.1| - 0.0012 18.5 0.4 0.18 11.6 0.0 2.6 2 0 0 2 2 2 1 YhfH-like protein TF_Zn_Ribbon PF08271.7 gi|352681406|ref|YP_004891930.1| - 0.0031 16.7 0.8 0.087 12.1 0.1 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.2 gi|352681406|ref|YP_004891930.1| - 0.0097 15.7 0.9 0.015 15.0 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|352681406|ref|YP_004891930.1| - 0.028 14.1 0.6 0.042 13.5 0.4 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|352681406|ref|YP_004891930.1| - 0.033 13.6 7.3 0.1 12.1 5.0 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|352681406|ref|YP_004891930.1| - 0.033 13.3 0.5 0.19 10.9 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|352681406|ref|YP_004891930.1| - 0.047 12.9 6.4 0.26 10.5 0.5 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|352681406|ref|YP_004891930.1| - 0.053 13.1 1.5 3.3 7.3 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352681406|ref|YP_004891930.1| - 0.071 12.8 1.4 3.9 7.2 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF2082 PF09855.4 gi|352681406|ref|YP_004891930.1| - 0.15 11.9 1.8 0.82 9.5 0.0 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TFIIS_C PF01096.13 gi|352681406|ref|YP_004891930.1| - 0.28 10.8 3.0 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|352681406|ref|YP_004891930.1| - 0.43 10.4 5.0 0.51 10.1 0.1 2.2 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|352681406|ref|YP_004891930.1| - 0.57 10.1 7.4 22 5.0 5.1 2.4 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|352681406|ref|YP_004891930.1| - 0.85 9.3 3.0 0.57 9.8 0.3 1.8 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family ACP_syn_III_C PF08541.5 gi|352681407|ref|YP_004891931.1| - 1.9e-13 50.1 0.0 1.2e-12 47.6 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|352681407|ref|YP_004891931.1| - 9.7e-05 21.9 0.0 0.00045 19.7 0.0 1.8 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.18 gi|352681407|ref|YP_004891931.1| - 0.0074 15.2 0.0 0.015 14.2 0.0 1.4 2 0 0 2 2 2 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.12 gi|352681407|ref|YP_004891931.1| - 0.0095 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.5 gi|352681407|ref|YP_004891931.1| - 0.12 12.0 0.4 0.77 9.4 0.1 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FaeA PF04703.7 gi|352681408|ref|YP_004891932.1| - 3.1e-08 33.6 0.1 3.8e-08 33.3 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.1 gi|352681408|ref|YP_004891932.1| - 4.3e-07 29.2 0.0 5.7e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|352681408|ref|YP_004891932.1| - 5.5e-06 25.9 0.1 6.8e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|352681408|ref|YP_004891932.1| - 2.3e-05 23.8 0.0 2.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|352681408|ref|YP_004891932.1| - 8.9e-05 22.4 0.0 0.00013 21.8 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|352681408|ref|YP_004891932.1| - 0.00011 21.9 0.0 0.00015 21.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|352681408|ref|YP_004891932.1| - 0.00026 20.7 0.1 0.00034 20.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.14 gi|352681408|ref|YP_004891932.1| - 0.00037 20.1 0.1 0.00057 19.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|352681408|ref|YP_004891932.1| - 0.00041 19.9 0.0 0.00057 19.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|352681408|ref|YP_004891932.1| - 0.00097 18.8 0.1 0.0014 18.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|352681408|ref|YP_004891932.1| - 0.0013 18.1 0.1 0.0025 17.2 0.1 1.6 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|352681408|ref|YP_004891932.1| - 0.0014 18.9 0.1 0.0019 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF977 PF06163.6 gi|352681408|ref|YP_004891932.1| - 0.0017 18.0 0.2 0.0018 18.0 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_29 PF13551.1 gi|352681408|ref|YP_004891932.1| - 0.0019 18.3 0.0 0.0028 17.8 0.0 1.3 1 1 0 1 1 1 1 Winged helix-turn helix Replic_Relax PF13814.1 gi|352681408|ref|YP_004891932.1| - 0.0022 17.8 0.0 0.0024 17.7 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation B-block_TFIIIC PF04182.7 gi|352681408|ref|YP_004891932.1| - 0.0024 17.6 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_23 PF13384.1 gi|352681408|ref|YP_004891932.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.6 1 1 1 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.15 gi|352681408|ref|YP_004891932.1| - 0.013 15.5 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|352681408|ref|YP_004891932.1| - 0.014 15.3 0.4 0.015 15.2 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.11 gi|352681408|ref|YP_004891932.1| - 0.02 14.9 0.2 0.027 14.5 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_Crp_2 PF13545.1 gi|352681408|ref|YP_004891932.1| - 0.03 14.0 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|352681408|ref|YP_004891932.1| - 0.045 13.4 0.1 0.055 13.1 0.1 1.2 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.12 gi|352681408|ref|YP_004891932.1| - 0.048 13.1 0.3 0.064 12.7 0.2 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit DUF1013 PF06242.6 gi|352681408|ref|YP_004891932.1| - 0.063 13.2 0.0 0.085 12.8 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1013) RNA_pol_Rpc34 PF05158.7 gi|352681408|ref|YP_004891932.1| - 0.083 12.0 0.1 0.083 12.0 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit FUR PF01475.14 gi|352681408|ref|YP_004891932.1| - 0.096 12.6 0.1 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family FeoC PF09012.5 gi|352681408|ref|YP_004891932.1| - 0.098 12.3 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator TT_ORF2 PF02957.10 gi|352681409|ref|YP_004891933.1| - 1 10.0 4.5 1.5 9.5 3.1 1.2 1 0 0 1 1 1 0 TT viral ORF2 Ribosomal_S25 PF03297.10 gi|352681410|ref|YP_004891934.1| - 1.6e-09 37.6 3.5 1.9e-09 37.4 2.5 1.0 1 0 0 1 1 1 1 S25 ribosomal protein DDRGK PF09756.4 gi|352681410|ref|YP_004891934.1| - 0.0066 15.8 1.2 0.0092 15.3 0.8 1.2 1 0 0 1 1 1 1 DDRGK domain GntR PF00392.16 gi|352681410|ref|YP_004891934.1| - 0.017 14.5 0.5 0.034 13.5 0.3 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fmp27_WPPW PF10359.4 gi|352681410|ref|YP_004891934.1| - 0.02 13.3 0.1 0.023 13.1 0.1 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TrmB PF01978.14 gi|352681410|ref|YP_004891934.1| - 0.037 13.7 0.1 0.062 13.0 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_42 PF06224.7 gi|352681410|ref|YP_004891934.1| - 0.09 12.0 2.1 0.098 11.9 1.4 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF977 PF06163.6 gi|352681410|ref|YP_004891934.1| - 0.11 12.1 0.6 0.15 11.8 0.1 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) DUF4557 PF15101.1 gi|352681410|ref|YP_004891934.1| - 0.18 11.6 1.5 0.2 11.4 1.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4557) Hamartin PF04388.7 gi|352681410|ref|YP_004891934.1| - 0.25 9.9 1.2 0.25 9.9 0.8 1.0 1 0 0 1 1 1 0 Hamartin protein DUF3306 PF11748.3 gi|352681410|ref|YP_004891934.1| - 0.43 11.2 3.1 0.55 10.8 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3306) YL1 PF05764.8 gi|352681410|ref|YP_004891934.1| - 0.46 10.0 7.5 0.57 9.7 5.2 1.1 1 0 0 1 1 1 0 YL1 nuclear protein FemAB PF02388.11 gi|352681410|ref|YP_004891934.1| - 0.53 8.9 4.7 0.64 8.6 3.3 1.0 1 0 0 1 1 1 0 FemAB family ATP-synt_E PF05680.7 gi|352681410|ref|YP_004891934.1| - 0.55 10.2 5.5 0.68 9.9 3.8 1.2 1 0 0 1 1 1 0 ATP synthase E chain Bap31 PF05529.7 gi|352681410|ref|YP_004891934.1| - 1.3 8.4 5.5 1.6 8.1 3.8 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like TBP PF00352.16 gi|352681411|ref|YP_004891935.1| - 7.5e-69 227.1 0.0 2.8e-34 116.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|352681411|ref|YP_004891935.1| - 0.0039 17.2 0.0 0.23 11.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Hjc PF01870.13 gi|352681413|ref|YP_004891937.1| - 2.1e-24 84.9 0.1 2.5e-24 84.6 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|352681413|ref|YP_004891937.1| - 0.021 15.1 0.0 0.036 14.3 0.0 1.5 1 1 1 2 2 2 0 Nuclease-related domain Nif11 PF07862.6 gi|352681414|ref|YP_004891938.1| - 0.0012 18.7 1.0 0.67 9.9 0.1 2.1 2 0 0 2 2 2 2 Nitrogen fixation protein of unknown function Lactamase_B_3 PF13483.1 gi|352681415|ref|YP_004891939.1| - 2.6e-26 92.2 0.0 3.2e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|352681415|ref|YP_004891939.1| - 2.7e-19 69.4 0.0 3.6e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352681415|ref|YP_004891939.1| - 8.7e-10 38.5 1.0 1.8e-09 37.5 0.7 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Trp_halogenase PF04820.9 gi|352681416|ref|YP_004891940.1| - 3.4e-15 55.6 0.1 2.4e-10 39.6 0.0 2.4 2 1 0 2 2 2 2 Tryptophan halogenase DAO PF01266.19 gi|352681416|ref|YP_004891940.1| - 6.9e-15 54.7 0.2 1.8e-08 33.7 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|352681416|ref|YP_004891940.1| - 8.6e-11 41.3 0.6 1.2e-05 24.3 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|352681416|ref|YP_004891940.1| - 1.6e-07 30.7 5.6 0.00022 20.4 0.1 3.5 2 1 1 4 4 4 2 FAD binding domain GIDA PF01134.17 gi|352681416|ref|YP_004891940.1| - 4.2e-07 29.1 0.1 8.4e-07 28.1 0.1 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|352681416|ref|YP_004891940.1| - 5.6e-07 29.5 0.4 2.2e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|352681416|ref|YP_004891940.1| - 6e-07 28.7 0.1 1.2e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|352681416|ref|YP_004891940.1| - 6.9e-07 28.6 1.0 0.0036 16.4 0.4 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|352681416|ref|YP_004891940.1| - 6e-06 26.2 0.5 2.9e-05 24.0 0.2 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|352681416|ref|YP_004891940.1| - 1.1e-05 24.1 0.1 1.6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|352681416|ref|YP_004891940.1| - 0.00034 19.6 0.6 0.0015 17.5 0.1 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|352681416|ref|YP_004891940.1| - 0.0019 17.8 0.1 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GMC_oxred_N PF00732.14 gi|352681416|ref|YP_004891940.1| - 0.0071 15.5 0.0 2.5 7.1 0.0 2.2 2 0 0 2 2 2 2 GMC oxidoreductase Pyr_redox_3 PF13738.1 gi|352681416|ref|YP_004891940.1| - 0.016 15.3 0.2 0.057 13.4 0.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|352681416|ref|YP_004891940.1| - 0.053 13.9 0.1 0.15 12.5 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF3326 PF11805.3 gi|352681416|ref|YP_004891940.1| - 0.093 11.4 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3326) ApbA PF02558.11 gi|352681416|ref|YP_004891940.1| - 0.096 12.1 0.1 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|352681416|ref|YP_004891940.1| - 0.12 12.1 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 ThiF family Aldolase_II PF00596.16 gi|352681417|ref|YP_004891941.1| - 1.4e-49 168.2 0.0 1.6e-49 168.0 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain DUF3148 PF11347.3 gi|352681417|ref|YP_004891941.1| - 0.0049 16.4 0.1 0.026 14.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3148) CTP-dep_RFKase PF01982.11 gi|352681418|ref|YP_004891942.1| - 3.6e-43 146.0 0.0 5e-43 145.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.2 gi|352681418|ref|YP_004891942.1| - 1.6e-06 27.7 0.6 3e-06 26.7 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|352681418|ref|YP_004891942.1| - 1.3e-05 25.0 1.9 0.00038 20.3 0.5 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|352681418|ref|YP_004891942.1| - 1.6e-05 24.4 0.9 3.7e-05 23.2 0.6 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_8 PF02954.14 gi|352681418|ref|YP_004891942.1| - 0.00015 21.1 1.6 0.00015 21.1 1.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_24 PF13412.1 gi|352681418|ref|YP_004891942.1| - 0.00022 20.5 0.1 0.00071 18.9 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.22 gi|352681418|ref|YP_004891942.1| - 0.00037 20.1 0.0 0.00079 19.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.2 gi|352681418|ref|YP_004891942.1| - 0.00039 20.1 0.3 0.00076 19.2 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|352681418|ref|YP_004891942.1| - 0.00061 19.3 0.1 0.0021 17.6 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.1 gi|352681418|ref|YP_004891942.1| - 0.0011 19.1 0.2 0.0018 18.3 0.2 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_36 PF13730.1 gi|352681418|ref|YP_004891942.1| - 0.0015 18.6 0.1 0.0032 17.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|352681418|ref|YP_004891942.1| - 0.0035 17.5 0.3 2.9 8.2 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|352681418|ref|YP_004891942.1| - 0.0036 16.9 0.1 0.011 15.4 0.1 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|352681418|ref|YP_004891942.1| - 0.0058 16.2 0.0 0.078 12.6 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_30 PF13556.1 gi|352681418|ref|YP_004891942.1| - 0.013 15.1 0.2 0.032 13.8 0.1 1.7 2 0 0 2 2 1 0 PucR C-terminal helix-turn-helix domain GntR PF00392.16 gi|352681418|ref|YP_004891942.1| - 0.014 14.8 0.3 0.43 10.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|352681418|ref|YP_004891942.1| - 0.022 15.0 0.1 0.052 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|352681418|ref|YP_004891942.1| - 0.027 14.1 0.1 0.16 11.6 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|352681418|ref|YP_004891942.1| - 0.061 13.4 0.0 0.099 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|352681418|ref|YP_004891942.1| - 0.077 12.7 0.1 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|352681418|ref|YP_004891942.1| - 0.13 11.8 0.1 2.5 7.7 0.1 2.8 3 1 0 3 3 3 0 LexA DNA binding domain Acetyltransf_1 PF00583.19 gi|352681418|ref|YP_004891942.1| - 0.66 10.0 2.5 32 4.6 1.6 2.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family AAA_10 PF12846.2 gi|352681419|ref|YP_004891943.1| - 3.5e-23 82.5 0.3 8.6e-16 58.2 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|352681419|ref|YP_004891943.1| - 4.6e-21 75.6 0.0 7.7e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|352681419|ref|YP_004891943.1| - 3.9e-09 35.6 0.0 8.8e-08 31.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|352681419|ref|YP_004891943.1| - 1e-05 25.1 0.1 0.00017 21.1 0.1 2.4 1 1 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|352681419|ref|YP_004891943.1| - 9.4e-05 22.4 1.3 0.0013 18.7 0.3 2.5 2 1 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.8 gi|352681419|ref|YP_004891943.1| - 0.0007 18.5 0.0 0.0014 17.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Zot PF05707.7 gi|352681419|ref|YP_004891943.1| - 0.0011 18.5 0.0 0.0023 17.4 0.0 1.5 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|352681419|ref|YP_004891943.1| - 0.0015 18.6 0.2 1.1 9.3 0.1 3.3 3 1 0 3 3 3 1 AAA domain MobB PF03205.9 gi|352681419|ref|YP_004891943.1| - 0.0041 16.8 0.2 0.0092 15.6 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|352681419|ref|YP_004891943.1| - 0.0047 17.2 0.0 0.0092 16.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ArgK PF03308.11 gi|352681419|ref|YP_004891943.1| - 0.0061 15.3 0.1 0.0096 14.7 0.1 1.2 1 0 0 1 1 1 1 ArgK protein MMR_HSR1 PF01926.18 gi|352681419|ref|YP_004891943.1| - 0.034 14.0 0.0 0.075 12.9 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|352681419|ref|YP_004891943.1| - 0.052 13.7 0.0 7.5 6.7 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|352681419|ref|YP_004891943.1| - 0.056 13.1 0.1 0.62 9.7 0.1 2.1 1 1 0 1 1 1 0 Archaeal ATPase SBP_bac_1 PF01547.20 gi|352681421|ref|YP_004891945.1| - 6.1e-14 52.4 10.8 6.1e-14 52.4 7.5 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SSP160 PF06933.6 gi|352681421|ref|YP_004891945.1| - 0.81 7.5 14.7 1.1 7.1 10.2 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 BPD_transp_1 PF00528.17 gi|352681422|ref|YP_004891946.1| - 6.9e-15 55.0 27.6 6.9e-15 55.0 19.2 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_U15 PF05613.6 gi|352681422|ref|YP_004891946.1| - 5.8 7.3 9.8 0.38 11.1 2.5 2.2 2 2 1 3 3 3 0 Human herpesvirus U15 protein BPD_transp_1 PF00528.17 gi|352681423|ref|YP_004891947.1| - 5.1e-17 61.9 25.2 5.1e-17 61.9 17.4 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|352681424|ref|YP_004891948.1| - 4.7e-35 120.8 0.0 9.7e-35 119.8 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|352681424|ref|YP_004891948.1| - 2e-12 47.6 2.1 1e-09 38.8 0.4 2.5 2 1 0 2 2 1 1 AAA domain TOBE_2 PF08402.5 gi|352681424|ref|YP_004891948.1| - 3.3e-06 26.9 0.0 9.9e-06 25.4 0.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_15 PF13175.1 gi|352681424|ref|YP_004891948.1| - 0.00042 19.4 0.0 0.13 11.2 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|352681424|ref|YP_004891948.1| - 0.0013 18.5 0.1 0.0051 16.6 0.1 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|352681424|ref|YP_004891948.1| - 0.0028 18.4 0.1 0.0069 17.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|352681424|ref|YP_004891948.1| - 0.0033 16.6 0.1 0.048 12.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|352681424|ref|YP_004891948.1| - 0.0037 17.1 0.1 1.8 8.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|352681424|ref|YP_004891948.1| - 0.004 16.8 0.1 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|352681424|ref|YP_004891948.1| - 0.0097 15.3 0.1 0.42 10.0 0.1 2.2 1 1 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|352681424|ref|YP_004891948.1| - 0.013 15.2 0.0 0.033 13.9 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|352681424|ref|YP_004891948.1| - 0.016 15.5 1.1 0.042 14.1 0.4 1.9 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|352681424|ref|YP_004891948.1| - 0.02 15.3 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_29 PF13555.1 gi|352681424|ref|YP_004891948.1| - 0.03 13.8 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|352681424|ref|YP_004891948.1| - 0.031 13.4 0.0 0.054 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|352681424|ref|YP_004891948.1| - 0.038 13.9 0.8 0.1 12.5 0.5 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|352681424|ref|YP_004891948.1| - 0.049 13.8 0.1 1.4 9.1 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|352681424|ref|YP_004891948.1| - 0.051 13.8 0.5 0.27 11.5 0.4 2.2 2 1 0 2 2 1 0 AAA domain AAA_22 PF13401.1 gi|352681424|ref|YP_004891948.1| - 0.12 12.4 0.3 0.38 10.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain PALP PF00291.20 gi|352681425|ref|YP_004891949.1| - 9.7e-34 116.9 0.0 2.8e-33 115.4 0.0 1.7 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme HypD PF01924.11 gi|352681426|ref|YP_004891950.1| - 6.9e-125 416.4 0.0 8.3e-125 416.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase formation hypA family PrpR_N PF06506.6 gi|352681426|ref|YP_004891950.1| - 0.12 11.7 0.2 0.58 9.5 0.0 2.1 2 0 0 2 2 2 0 Propionate catabolism activator HupF_HypC PF01455.13 gi|352681427|ref|YP_004891951.1| - 2.7e-12 46.4 1.6 3.5e-12 46.1 0.4 1.7 2 0 0 2 2 2 1 HupF/HypC family Sua5_yciO_yrdC PF01300.13 gi|352681428|ref|YP_004891952.1| - 5e-46 156.1 0.0 7.4e-46 155.6 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|352681428|ref|YP_004891952.1| - 1.9e-20 71.9 4.9 4.4e-10 38.7 0.4 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|352681428|ref|YP_004891952.1| - 1.8e-19 69.5 0.0 3.2e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|352681428|ref|YP_004891952.1| - 0.00029 20.4 0.1 0.055 12.9 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family zf-C4_ClpX PF06689.8 gi|352681428|ref|YP_004891952.1| - 0.069 12.6 1.0 7.4 6.1 0.0 2.5 2 0 0 2 2 2 0 ClpX C4-type zinc finger ABC_tran PF00005.22 gi|352681429|ref|YP_004891953.1| - 1.2e-29 103.3 0.0 1.5e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681429|ref|YP_004891953.1| - 1.5e-15 57.9 0.0 1.8e-09 38.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|352681429|ref|YP_004891953.1| - 7.1e-08 32.0 0.1 9.3e-08 31.6 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|352681429|ref|YP_004891953.1| - 1.5e-07 31.2 0.0 0.0088 15.5 0.0 2.5 3 0 0 3 3 3 2 AAA-like domain SMC_N PF02463.14 gi|352681429|ref|YP_004891953.1| - 2.8e-07 29.9 0.0 0.0003 20.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|352681429|ref|YP_004891953.1| - 9.2e-07 29.0 0.0 2.1e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|352681429|ref|YP_004891953.1| - 0.00056 19.7 0.1 0.0024 17.7 0.0 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|352681429|ref|YP_004891953.1| - 0.0013 17.9 0.0 0.18 10.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|352681429|ref|YP_004891953.1| - 0.0013 18.2 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|352681429|ref|YP_004891953.1| - 0.0044 17.0 0.5 0.012 15.6 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|352681429|ref|YP_004891953.1| - 0.0044 15.9 0.0 0.0076 15.1 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|352681429|ref|YP_004891953.1| - 0.0049 16.5 0.2 0.062 13.0 0.0 2.5 2 1 0 2 2 2 1 Part of AAA domain MobB PF03205.9 gi|352681429|ref|YP_004891953.1| - 0.0092 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|352681429|ref|YP_004891953.1| - 0.01 16.1 0.0 0.014 15.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|352681429|ref|YP_004891953.1| - 0.017 14.6 0.0 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|352681429|ref|YP_004891953.1| - 0.018 14.7 0.1 0.03 13.9 0.1 1.3 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|352681429|ref|YP_004891953.1| - 0.025 14.0 0.0 0.68 9.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|352681429|ref|YP_004891953.1| - 0.026 14.8 0.0 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|352681429|ref|YP_004891953.1| - 0.031 13.9 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|352681429|ref|YP_004891953.1| - 0.036 13.6 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|352681429|ref|YP_004891953.1| - 0.039 13.8 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|352681429|ref|YP_004891953.1| - 0.043 13.6 0.2 0.17 11.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|352681429|ref|YP_004891953.1| - 0.065 12.6 0.1 0.097 12.1 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|352681429|ref|YP_004891953.1| - 0.087 12.7 0.5 0.35 10.7 0.2 2.0 1 1 1 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|352681429|ref|YP_004891953.1| - 0.087 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|352681429|ref|YP_004891953.1| - 0.093 12.4 0.1 0.27 10.9 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ResIII PF04851.10 gi|352681429|ref|YP_004891953.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_17 PF13207.1 gi|352681429|ref|YP_004891953.1| - 0.11 13.2 1.8 0.19 12.5 1.2 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|352681429|ref|YP_004891953.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|352681429|ref|YP_004891953.1| - 0.14 11.3 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Adeno_IVa2 PF02456.10 gi|352681429|ref|YP_004891953.1| - 0.14 10.7 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_24 PF13479.1 gi|352681429|ref|YP_004891953.1| - 0.19 11.2 0.1 0.3 10.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain PDGLE PF13190.1 gi|352681431|ref|YP_004891955.1| - 3.9e-09 36.0 0.1 4.7e-09 35.7 0.1 1.1 1 0 0 1 1 1 1 PDGLE domain DUF2269 PF10027.4 gi|352681431|ref|YP_004891955.1| - 0.052 13.3 0.8 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) SDF PF00375.13 gi|352681431|ref|YP_004891955.1| - 1.3 7.7 4.0 5.5 5.6 0.0 2.0 1 1 1 2 2 2 0 Sodium:dicarboxylate symporter family ABC2_membrane_4 PF12730.2 gi|352681431|ref|YP_004891955.1| - 3.3 6.8 7.3 7.7 5.6 5.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein CbiM PF01891.11 gi|352681432|ref|YP_004891956.1| - 4.4e-62 209.3 17.3 4.9e-62 209.1 12.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|352681432|ref|YP_004891956.1| - 0.0004 20.3 19.4 0.0012 18.7 13.5 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) DUF2759 PF10958.3 gi|352681432|ref|YP_004891956.1| - 0.021 14.4 3.3 0.072 12.6 2.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2759) DUF4199 PF13858.1 gi|352681432|ref|YP_004891956.1| - 8.6 6.2 16.7 0.4 10.5 5.4 2.7 2 1 0 3 3 3 0 Protein of unknown function (DUF4199) NikR_C PF08753.6 gi|352681433|ref|YP_004891957.1| - 1.3e-22 79.4 0.6 1.9e-22 78.9 0.4 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain DUF2042 PF09743.4 gi|352681433|ref|YP_004891957.1| - 0.035 13.4 0.1 0.078 12.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) EXOSC1 PF10447.4 gi|352681433|ref|YP_004891957.1| - 0.085 12.8 0.4 0.085 12.8 0.3 1.5 2 0 0 2 2 2 0 Exosome component EXOSC1/CSL4 HypA PF01155.14 gi|352681434|ref|YP_004891958.1| - 1.7e-24 85.6 0.0 2.1e-24 85.3 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|352681434|ref|YP_004891958.1| - 0.00083 19.1 2.4 0.051 13.4 0.2 2.2 2 0 0 2 2 2 1 Rubredoxin zf-ISL3 PF14690.1 gi|352681434|ref|YP_004891958.1| - 0.0012 18.8 1.3 0.83 9.7 0.1 2.4 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|352681434|ref|YP_004891958.1| - 0.0029 17.5 3.7 0.95 9.4 0.0 2.3 2 0 0 2 2 2 2 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|352681434|ref|YP_004891958.1| - 0.0038 16.5 0.2 2.3 7.6 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|352681434|ref|YP_004891958.1| - 0.0066 15.6 0.9 0.33 10.1 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|352681434|ref|YP_004891958.1| - 0.007 16.1 0.6 1.6 8.6 0.0 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|352681434|ref|YP_004891958.1| - 0.012 15.3 0.9 0.19 11.4 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|352681434|ref|YP_004891958.1| - 0.045 13.2 1.1 2.7 7.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|352681434|ref|YP_004891958.1| - 0.068 12.8 5.8 0.48 10.1 0.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|352681434|ref|YP_004891958.1| - 0.073 13.3 1.0 2.5 8.4 0.1 2.1 1 1 0 2 2 2 0 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|352681434|ref|YP_004891958.1| - 0.1 12.2 1.8 7.5 6.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1 PF03811.8 gi|352681434|ref|YP_004891958.1| - 0.17 11.3 4.6 2.9 7.4 0.1 2.4 2 0 0 2 2 2 0 InsA N-terminal domain DUF35_N PF12172.3 gi|352681434|ref|YP_004891958.1| - 0.23 11.4 3.0 2.3 8.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.1 gi|352681434|ref|YP_004891958.1| - 0.24 11.1 1.4 9.5 6.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|352681434|ref|YP_004891958.1| - 0.28 10.6 3.6 7.7 6.0 0.2 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|352681434|ref|YP_004891958.1| - 0.29 10.7 2.1 7.8 6.1 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|352681434|ref|YP_004891958.1| - 0.64 9.7 6.2 4.6 6.9 1.0 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-IS66 PF13005.2 gi|352681434|ref|YP_004891958.1| - 3.6 7.6 9.9 0.98 9.4 0.6 2.9 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 ParA PF10609.4 gi|352681435|ref|YP_004891959.1| - 2e-11 43.5 0.0 3.1e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|352681435|ref|YP_004891959.1| - 2.4e-06 27.0 0.0 3.6e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF917 PF06032.7 gi|352681435|ref|YP_004891959.1| - 0.0086 14.6 0.0 0.012 14.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF917) ArsA_ATPase PF02374.10 gi|352681435|ref|YP_004891959.1| - 0.049 12.6 0.1 0.12 11.3 0.1 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_25 PF13481.1 gi|352681435|ref|YP_004891959.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|352681435|ref|YP_004891959.1| - 0.13 13.0 0.1 0.31 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|352681435|ref|YP_004891959.1| - 0.17 11.8 0.0 0.59 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain HMGL-like PF00682.14 gi|352681437|ref|YP_004891961.1| - 2.3e-48 164.9 0.1 4.5e-48 163.9 0.0 1.4 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|352681437|ref|YP_004891961.1| - 2.1e-27 95.5 0.0 4e-27 94.6 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Oxidored_q3 PF00499.15 gi|352681438|ref|YP_004891962.1| - 0.0031 17.2 10.6 0.0066 16.2 6.7 1.9 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FA_desaturase PF00487.19 gi|352681438|ref|YP_004891962.1| - 9.4 5.5 7.8 6.6 6.0 4.4 1.6 1 1 0 1 1 1 0 Fatty acid desaturase RhodobacterPufX PF11511.3 gi|352681438|ref|YP_004891962.1| - 9.9 5.6 7.5 11 5.4 3.4 2.4 1 1 1 2 2 2 0 Intrinsic membrane protein PufX Oxidored_q2 PF00420.19 gi|352681439|ref|YP_004891963.1| - 0.0013 18.3 4.4 0.0016 17.9 3.1 1.2 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF3188 PF11384.3 gi|352681439|ref|YP_004891963.1| - 0.0071 15.8 4.0 0.013 15.0 0.5 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3188) YtpI PF14007.1 gi|352681439|ref|YP_004891963.1| - 0.022 14.6 1.0 0.022 14.6 0.7 1.4 1 1 0 1 1 1 0 YtpI-like protein BCLP PF12304.3 gi|352681439|ref|YP_004891963.1| - 0.1 12.0 5.5 0.12 11.8 3.8 1.1 1 0 0 1 1 1 0 Beta-casein like protein Glucos_trans_II PF14264.1 gi|352681439|ref|YP_004891963.1| - 0.28 10.1 2.6 0.29 10.0 1.8 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII Flavi_NS4A PF01350.12 gi|352681439|ref|YP_004891963.1| - 1 8.8 5.6 1.2 8.6 3.9 1.0 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4A Bac_rhodopsin PF01036.13 gi|352681439|ref|YP_004891963.1| - 1.1 8.5 4.6 1.1 8.4 3.2 1.0 1 0 0 1 1 1 0 Bacteriorhodopsin-like protein O-antigen_lig PF13425.1 gi|352681439|ref|YP_004891963.1| - 1.1 9.2 4.2 1.2 9.1 2.9 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF2178 PF09946.4 gi|352681439|ref|YP_004891963.1| - 1.8 8.3 5.6 1.2 8.8 0.4 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2178) DUF2108 PF09881.4 gi|352681439|ref|YP_004891963.1| - 6.9 6.5 7.8 8.2 6.3 5.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2108) DUF4418 PF14387.1 gi|352681439|ref|YP_004891963.1| - 9.9 5.9 9.0 37 4.0 6.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) Oxidored_q1 PF00361.15 gi|352681440|ref|YP_004891964.1| - 2.3e-32 112.3 14.4 4.4e-32 111.4 9.7 1.7 1 1 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|352681441|ref|YP_004891965.1| - 9.1e-28 97.2 10.1 9.1e-28 97.2 7.0 2.2 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|352681442|ref|YP_004891966.1| - 1.8e-11 43.7 5.9 1.1e-09 38.0 2.4 2.9 1 1 1 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains POR PF01558.13 gi|352681443|ref|YP_004891967.1| - 1.1e-32 113.3 0.2 1.4e-32 113.0 0.2 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|352681443|ref|YP_004891967.1| - 1.3e-14 53.0 12.8 2.4e-08 33.2 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352681443|ref|YP_004891967.1| - 1.7e-11 43.8 5.7 2.8e-11 43.1 3.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681443|ref|YP_004891967.1| - 5e-09 36.7 20.1 8.2e-06 26.4 7.0 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|352681443|ref|YP_004891967.1| - 5.8e-09 36.2 8.4 3.9e-08 33.5 6.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681443|ref|YP_004891967.1| - 6.6e-08 32.0 14.7 2.1e-05 24.2 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352681443|ref|YP_004891967.1| - 1.4e-07 31.2 10.7 4.6e-06 26.3 8.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352681443|ref|YP_004891967.1| - 2.1e-07 30.4 13.2 0.0016 18.2 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352681443|ref|YP_004891967.1| - 6.1e-07 29.5 9.0 3.2e-06 27.3 6.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352681443|ref|YP_004891967.1| - 3.5e-06 27.3 2.0 0.009 16.4 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352681443|ref|YP_004891967.1| - 3.5e-05 23.7 6.5 7.3e-05 22.7 4.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352681443|ref|YP_004891967.1| - 3.8e-05 23.6 13.4 0.019 15.2 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|352681443|ref|YP_004891967.1| - 0.0017 18.6 7.4 0.44 10.9 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681443|ref|YP_004891967.1| - 0.0018 18.8 8.7 0.088 13.3 0.7 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|352681443|ref|YP_004891967.1| - 0.01 16.1 11.7 0.031 14.6 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF2073 PF09846.4 gi|352681443|ref|YP_004891967.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) Fer4_3 PF12798.2 gi|352681443|ref|YP_004891967.1| - 0.024 15.1 7.3 0.024 15.1 5.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|352681444|ref|YP_004891968.1| - 6.8e-67 225.3 0.4 9.7e-67 224.8 0.3 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|352681444|ref|YP_004891968.1| - 3.5e-12 46.3 0.5 1.1e-11 44.7 0.0 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|352681445|ref|YP_004891969.1| - 2.1e-27 95.5 0.2 2.9e-27 95.1 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|352681445|ref|YP_004891969.1| - 5.5e-05 22.2 0.2 0.0025 16.7 0.1 2.2 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase YjeF_N PF03853.10 gi|352681445|ref|YP_004891969.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus VWA_2 PF13519.1 gi|352681445|ref|YP_004891969.1| - 0.18 11.9 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain Fer4 PF00037.22 gi|352681446|ref|YP_004891970.1| - 7.8e-16 56.9 13.6 7.7e-09 34.7 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352681446|ref|YP_004891970.1| - 7.6e-14 51.2 8.0 1.2e-13 50.6 5.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352681446|ref|YP_004891970.1| - 4.4e-12 45.1 13.2 6.3e-06 25.7 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|352681446|ref|YP_004891970.1| - 5e-12 45.1 12.0 3.6e-06 26.5 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|352681446|ref|YP_004891970.1| - 1.1e-11 44.9 9.8 1.7e-11 44.3 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681446|ref|YP_004891970.1| - 2.2e-09 37.4 10.7 5.8e-09 36.0 7.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352681446|ref|YP_004891970.1| - 2.3e-09 37.4 1.6 0.00061 20.0 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681446|ref|YP_004891970.1| - 9.4e-09 35.9 6.0 0.00027 21.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|352681446|ref|YP_004891970.1| - 2.2e-08 33.7 13.2 0.00044 20.3 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352681446|ref|YP_004891970.1| - 2.6e-08 33.7 21.1 3.1e-06 27.1 8.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352681446|ref|YP_004891970.1| - 1e-07 32.2 6.6 0.00077 19.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681446|ref|YP_004891970.1| - 1.2e-07 31.4 15.8 6.6e-06 25.8 6.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681446|ref|YP_004891970.1| - 2.2e-06 28.1 4.9 0.022 15.2 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|352681446|ref|YP_004891970.1| - 6.5e-06 26.3 18.5 0.00087 19.6 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|352681446|ref|YP_004891970.1| - 0.00026 21.3 11.0 0.032 14.6 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_5 PF12801.2 gi|352681446|ref|YP_004891970.1| - 0.86 9.4 3.4 2.2 8.1 2.3 1.7 1 1 0 1 1 1 0 4Fe-4S binding domain NADHdh PF00146.16 gi|352681447|ref|YP_004891971.1| - 3.8e-51 173.9 18.2 4.6e-51 173.7 12.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF2206 PF09971.4 gi|352681447|ref|YP_004891971.1| - 0.016 14.0 0.4 0.027 13.3 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Oxidored_q4 PF00507.14 gi|352681448|ref|YP_004891972.1| - 0.003 17.3 0.5 0.0094 15.7 0.4 1.8 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF202 PF02656.10 gi|352681448|ref|YP_004891972.1| - 0.29 11.3 1.5 0.87 9.8 1.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) YtxH PF12732.2 gi|352681448|ref|YP_004891972.1| - 0.83 10.0 3.0 1.6 9.1 0.6 2.1 2 0 0 2 2 2 0 YtxH-like protein Oxidored_q6 PF01058.17 gi|352681449|ref|YP_004891973.1| - 1.1e-24 86.4 0.1 1.3e-24 86.2 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|352681450|ref|YP_004891974.1| - 1.2e-38 132.7 0.0 1.4e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MFS_1 PF07690.11 gi|352681451|ref|YP_004891975.1| - 9.3e-52 175.8 42.1 9.3e-52 175.8 29.2 1.8 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|352681451|ref|YP_004891975.1| - 4.1e-18 65.1 21.4 1.1e-16 60.5 4.8 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|352681451|ref|YP_004891975.1| - 0.00017 20.1 39.2 0.0043 15.5 11.0 3.7 3 1 0 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|352681451|ref|YP_004891975.1| - 0.0005 18.3 7.1 0.0005 18.3 4.9 2.4 2 0 0 2 2 2 1 Transmembrane secretion effector Glycos_transf_1 PF00534.15 gi|352681452|ref|YP_004891976.1| - 4.5e-27 94.5 0.0 6.4e-27 94.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|352681452|ref|YP_004891976.1| - 9.6e-09 35.3 0.0 1.7e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352681452|ref|YP_004891976.1| - 2.7e-08 34.0 0.1 8.2e-08 32.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 TOMM6 PF15184.1 gi|352681453|ref|YP_004891977.1| - 0.22 10.8 1.2 0.45 9.8 0.1 2.1 3 0 0 3 3 3 0 Mitochondrial import receptor subunit TOM6 homolog tRNA-synt_1b PF00579.20 gi|352681454|ref|YP_004891978.1| - 1.6e-30 106.2 0.0 2.8e-30 105.4 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Sep15_SelM PF08806.6 gi|352681454|ref|YP_004891978.1| - 0.016 14.9 0.1 0.037 13.7 0.1 1.6 1 0 0 1 1 1 0 Sep15/SelM redox domain tRNA-synt_1f PF01921.13 gi|352681454|ref|YP_004891978.1| - 0.04 12.5 0.0 0.75 8.4 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) TRAM PF01938.15 gi|352681455|ref|YP_004891979.1| - 8.3e-14 51.1 3.7 1e-13 50.8 2.6 1.1 1 0 0 1 1 1 1 TRAM domain CusF_Ec PF11604.3 gi|352681455|ref|YP_004891979.1| - 0.023 14.5 0.2 0.53 10.1 0.0 2.0 2 0 0 2 2 2 0 Copper binding periplasmic protein CusF MarR_2 PF12802.2 gi|352681456|ref|YP_004891980.1| - 1.1e-09 37.8 0.3 1.7e-09 37.2 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|352681456|ref|YP_004891980.1| - 4.9e-08 32.2 0.0 9.5e-08 31.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|352681456|ref|YP_004891980.1| - 2.6e-07 30.2 0.0 4.1e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|352681456|ref|YP_004891980.1| - 3.6e-06 26.5 0.0 5.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|352681456|ref|YP_004891980.1| - 2.1e-05 24.1 0.0 4.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|352681456|ref|YP_004891980.1| - 2.8e-05 23.6 0.1 6.9e-05 22.3 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|352681456|ref|YP_004891980.1| - 3.7e-05 23.1 0.0 6.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|352681456|ref|YP_004891980.1| - 0.00012 21.4 0.1 0.00025 20.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|352681456|ref|YP_004891980.1| - 0.00014 21.8 0.0 0.00033 20.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|352681456|ref|YP_004891980.1| - 0.00058 20.1 0.0 0.001 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|352681456|ref|YP_004891980.1| - 0.0017 18.2 0.0 0.0035 17.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|352681456|ref|YP_004891980.1| - 0.0027 17.6 0.2 0.017 15.1 0.0 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|352681456|ref|YP_004891980.1| - 0.0042 16.8 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|352681456|ref|YP_004891980.1| - 0.0055 16.3 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Pex14_N PF04695.8 gi|352681456|ref|YP_004891980.1| - 0.013 15.5 6.0 0.019 15.0 4.2 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Penicillinase_R PF03965.11 gi|352681456|ref|YP_004891980.1| - 0.013 15.5 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor TFIIE_alpha PF02002.12 gi|352681456|ref|YP_004891980.1| - 0.014 14.8 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF605 PF04652.11 gi|352681456|ref|YP_004891980.1| - 0.017 14.5 3.6 0.021 14.2 2.5 1.1 1 0 0 1 1 1 0 Vta1 like RPA_C PF08784.6 gi|352681456|ref|YP_004891980.1| - 0.019 15.3 2.2 0.25 11.7 1.5 2.2 1 1 0 1 1 1 0 Replication protein A C terminal HTH_CodY PF08222.6 gi|352681456|ref|YP_004891980.1| - 0.021 14.1 0.1 0.097 12.0 0.0 2.0 2 0 0 2 2 2 0 CodY helix-turn-helix domain DUF2250 PF10007.4 gi|352681456|ref|YP_004891980.1| - 0.042 13.7 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.1 gi|352681456|ref|YP_004891980.1| - 0.056 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_8 PF02954.14 gi|352681456|ref|YP_004891980.1| - 0.097 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family RAP1 PF07218.6 gi|352681456|ref|YP_004891980.1| - 0.65 8.0 7.8 0.84 7.6 5.4 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) P16-Arc PF04699.9 gi|352681457|ref|YP_004891981.1| - 0.11 12.5 0.5 0.27 11.2 0.1 1.8 2 0 0 2 2 2 0 ARP2/3 complex 16 kDa subunit (p16-Arc) Na_Ca_ex PF01699.19 gi|352681458|ref|YP_004891982.1| - 5.5e-17 61.6 16.9 3.1e-09 36.5 2.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein PBP_like PF12727.2 gi|352681459|ref|YP_004891983.1| - 1.5e-32 112.1 0.0 2.3e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.22 gi|352681459|ref|YP_004891983.1| - 2.1e-11 43.4 2.2 1.7e-09 37.2 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.15 gi|352681459|ref|YP_004891983.1| - 9.8e-06 24.8 0.1 0.0095 15.0 0.0 2.2 1 1 1 2 2 2 2 LysR substrate binding domain IncA PF04156.9 gi|352681460|ref|YP_004891984.1| - 3.4e-08 33.3 9.7 5.9e-08 32.5 6.7 1.3 1 0 0 1 1 1 1 IncA protein Thioredoxin_4 PF13462.1 gi|352681460|ref|YP_004891984.1| - 4.3e-07 30.0 0.0 1.2e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin Nup54 PF13874.1 gi|352681460|ref|YP_004891984.1| - 2.4e-06 27.2 4.2 4.3e-06 26.4 2.8 1.4 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 HALZ PF02183.13 gi|352681460|ref|YP_004891984.1| - 3.5e-05 23.4 18.5 0.026 14.2 1.9 4.2 2 1 1 3 3 3 2 Homeobox associated leucine zipper DivIC PF04977.10 gi|352681460|ref|YP_004891984.1| - 0.00032 20.1 10.4 0.0072 15.7 0.4 3.1 1 1 2 3 3 3 2 Septum formation initiator GAS PF13851.1 gi|352681460|ref|YP_004891984.1| - 0.00056 19.1 7.1 0.017 14.3 0.4 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding DUF904 PF06005.7 gi|352681460|ref|YP_004891984.1| - 0.00063 19.9 3.2 0.14 12.4 0.1 2.7 2 1 1 3 3 3 1 Protein of unknown function (DUF904) ALIX_LYPXL_bnd PF13949.1 gi|352681460|ref|YP_004891984.1| - 0.00091 18.2 4.6 0.0013 17.7 3.2 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV TMF_TATA_bd PF12325.3 gi|352681460|ref|YP_004891984.1| - 0.00096 18.8 5.3 0.086 12.5 0.9 2.7 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Rab5-bind PF09311.6 gi|352681460|ref|YP_004891984.1| - 0.0033 17.3 9.1 0.0057 16.5 0.8 2.1 2 0 0 2 2 2 1 Rabaptin-like protein ADIP PF11559.3 gi|352681460|ref|YP_004891984.1| - 0.0039 17.1 10.5 0.014 15.2 1.4 2.2 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding Tup_N PF08581.5 gi|352681460|ref|YP_004891984.1| - 0.0044 17.1 0.3 0.0044 17.1 0.2 1.9 2 0 0 2 2 2 1 Tup N-terminal BRE1 PF08647.6 gi|352681460|ref|YP_004891984.1| - 0.0082 16.0 3.1 0.12 12.3 0.2 2.2 1 1 1 2 2 2 1 BRE1 E3 ubiquitin ligase Mnd1 PF03962.10 gi|352681460|ref|YP_004891984.1| - 0.011 15.3 2.9 0.27 10.8 2.0 2.1 1 1 0 1 1 1 0 Mnd1 family Mod_r PF07200.8 gi|352681460|ref|YP_004891984.1| - 0.015 15.2 10.7 0.037 13.9 1.3 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF4201 PF13870.1 gi|352681460|ref|YP_004891984.1| - 0.016 14.6 3.4 0.024 14.0 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF342 PF03961.8 gi|352681460|ref|YP_004891984.1| - 0.029 12.8 3.9 0.96 7.7 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) AAA_13 PF13166.1 gi|352681460|ref|YP_004891984.1| - 0.031 12.7 1.2 0.045 12.2 0.8 1.2 1 0 0 1 1 1 0 AAA domain TMCO5 PF14992.1 gi|352681460|ref|YP_004891984.1| - 0.055 12.5 0.8 0.082 12.0 0.5 1.2 1 0 0 1 1 1 0 TMCO5 family APG6 PF04111.7 gi|352681460|ref|YP_004891984.1| - 0.071 12.1 7.7 0.43 9.5 5.3 1.9 1 1 0 1 1 1 0 Autophagy protein Apg6 Spc7 PF08317.6 gi|352681460|ref|YP_004891984.1| - 0.082 11.5 3.1 0.24 10.0 2.2 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein Spectrin PF00435.16 gi|352681460|ref|YP_004891984.1| - 0.083 13.1 2.6 2.5 8.4 0.1 2.3 1 1 0 2 2 2 0 Spectrin repeat TLE_N PF03920.10 gi|352681460|ref|YP_004891984.1| - 0.084 12.6 4.0 4.8 7.0 0.2 2.6 2 1 0 2 2 2 0 Groucho/TLE N-terminal Q-rich domain ESAG1 PF03238.8 gi|352681460|ref|YP_004891984.1| - 0.095 11.9 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 ESAG protein DUF2353 PF09789.4 gi|352681460|ref|YP_004891984.1| - 0.097 11.9 1.8 0.14 11.3 1.2 1.2 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Cep57_MT_bd PF06657.8 gi|352681460|ref|YP_004891984.1| - 0.1 12.5 8.0 0.47 10.4 0.4 3.1 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 Syntaxin_2 PF14523.1 gi|352681460|ref|YP_004891984.1| - 0.11 12.5 10.1 0.15 12.1 1.0 2.6 1 1 1 2 2 2 0 Syntaxin-like protein ATP-synt_D PF01813.12 gi|352681460|ref|YP_004891984.1| - 0.11 12.0 1.6 9.6 5.7 0.1 2.2 2 0 0 2 2 2 0 ATP synthase subunit D CENP-F_leu_zip PF10473.4 gi|352681460|ref|YP_004891984.1| - 0.12 12.2 2.3 0.62 9.9 0.3 2.0 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|352681460|ref|YP_004891984.1| - 0.14 11.9 7.5 28 4.5 5.0 2.8 1 1 0 1 1 1 0 Prefoldin subunit COG2 PF06148.6 gi|352681460|ref|YP_004891984.1| - 0.14 12.0 0.8 0.37 10.6 0.2 1.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 HAP1_N PF04849.8 gi|352681460|ref|YP_004891984.1| - 0.15 11.0 3.8 1.7 7.4 0.8 2.1 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Reo_sigmaC PF04582.7 gi|352681460|ref|YP_004891984.1| - 0.16 11.1 4.1 0.41 9.7 2.9 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein HalX PF08663.5 gi|352681460|ref|YP_004891984.1| - 0.16 11.9 11.7 1.3 9.0 0.2 3.4 2 1 1 3 3 3 0 HalX domain ATG16 PF08614.6 gi|352681460|ref|YP_004891984.1| - 0.19 11.5 6.5 0.096 12.4 0.3 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) GrpE PF01025.14 gi|352681460|ref|YP_004891984.1| - 0.2 11.2 4.2 1.2 8.6 0.2 2.3 1 1 1 2 2 2 0 GrpE Rootletin PF15035.1 gi|352681460|ref|YP_004891984.1| - 0.2 11.6 6.6 0.3 11.0 1.3 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF4407 PF14362.1 gi|352681460|ref|YP_004891984.1| - 0.23 10.3 4.9 1.7 7.4 3.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) FliD_N PF02465.13 gi|352681460|ref|YP_004891984.1| - 0.31 11.4 15.3 6.8 7.1 3.8 3.4 2 1 1 3 3 2 0 Flagellar hook-associated protein 2 N-terminus DUF972 PF06156.8 gi|352681460|ref|YP_004891984.1| - 0.35 11.2 3.1 8.9 6.7 2.2 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF972) OGG_N PF07934.7 gi|352681460|ref|YP_004891984.1| - 0.35 10.8 2.3 0.91 9.5 1.6 1.8 1 1 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain BLOC1_2 PF10046.4 gi|352681460|ref|YP_004891984.1| - 0.41 10.8 7.4 1.7 8.8 0.4 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG5 PF10392.4 gi|352681460|ref|YP_004891984.1| - 0.43 10.5 10.3 3.2 7.6 1.6 2.5 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Fmp27_WPPW PF10359.4 gi|352681460|ref|YP_004891984.1| - 0.47 8.8 2.7 2 6.7 1.9 1.7 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.16 gi|352681460|ref|YP_004891984.1| - 0.71 9.8 7.4 1.1 9.3 0.1 3.0 3 0 0 3 3 3 0 bZIP transcription factor CorA PF01544.13 gi|352681460|ref|YP_004891984.1| - 0.87 8.5 9.2 0.51 9.3 4.9 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4200 PF13863.1 gi|352681460|ref|YP_004891984.1| - 1 9.3 5.0 13 5.7 3.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) TMF_DNA_bd PF12329.3 gi|352681460|ref|YP_004891984.1| - 1.3 8.9 5.9 2.2 8.1 0.3 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Occludin_ELL PF07303.8 gi|352681460|ref|YP_004891984.1| - 1.3 9.7 7.9 6.7 7.5 0.7 2.6 1 1 2 3 3 3 0 Occludin homology domain Cir_Bir_Yir PF06022.6 gi|352681460|ref|YP_004891984.1| - 1.7 7.8 11.0 0.88 8.7 0.8 2.2 1 1 1 2 2 2 0 Plasmodium variant antigen protein Cir/Yir/Bir bZIP_Maf PF03131.12 gi|352681460|ref|YP_004891984.1| - 2.3 8.5 6.6 9.9 6.5 0.6 2.4 2 0 0 2 2 2 0 bZIP Maf transcription factor M PF02370.11 gi|352681460|ref|YP_004891984.1| - 2.9 8.5 5.3 67 4.3 0.0 4.0 3 1 0 4 4 3 0 M protein repeat TPR_MLP1_2 PF07926.7 gi|352681460|ref|YP_004891984.1| - 3 7.5 14.2 9.3 6.0 7.0 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein PilJ PF13675.1 gi|352681460|ref|YP_004891984.1| - 3.2 8.1 13.2 2.2 8.6 2.5 2.7 2 1 1 3 3 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DivIVA PF05103.8 gi|352681460|ref|YP_004891984.1| - 3.5 7.6 6.1 24 4.9 0.6 2.4 1 1 1 2 2 2 0 DivIVA protein TetR PF13972.1 gi|352681460|ref|YP_004891984.1| - 3.6 7.0 10.7 3.7 6.9 0.9 2.9 1 1 2 3 3 3 0 Bacterial transcriptional repressor OmpH PF03938.9 gi|352681460|ref|YP_004891984.1| - 3.6 7.4 7.2 10 6.0 5.0 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) T2SM PF04612.7 gi|352681460|ref|YP_004891984.1| - 3.8 7.2 11.2 4.6 7.0 3.6 2.5 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M CENP-Q PF13094.1 gi|352681460|ref|YP_004891984.1| - 4.3 7.3 14.9 1.5 8.8 1.8 2.2 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3450 PF11932.3 gi|352681460|ref|YP_004891984.1| - 7.7 5.6 11.8 1.7 7.8 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) FlxA PF14282.1 gi|352681460|ref|YP_004891984.1| - 8.3 6.4 8.9 2e+02 1.9 6.2 2.2 1 1 0 1 1 1 0 FlxA-like protein IFT57 PF10498.4 gi|352681460|ref|YP_004891984.1| - 9 4.9 7.1 5.9 5.5 0.6 2.0 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Exonuc_VII_L PF02601.10 gi|352681460|ref|YP_004891984.1| - 9.7 5.2 6.8 13 4.8 4.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DASH_Hsk3 PF08227.6 gi|352681460|ref|YP_004891984.1| - 9.7 6.4 11.0 8.6 6.6 0.4 3.4 3 0 0 3 3 2 0 DASH complex subunit Hsk3 like ATP-cone PF03477.11 gi|352681461|ref|YP_004891985.1| - 4.5e-10 39.8 0.0 5.3e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 ATP cone domain VEK-30 PF12107.3 gi|352681461|ref|YP_004891985.1| - 0.35 10.6 1.6 0.65 9.7 1.1 1.4 1 0 0 1 1 1 0 Plasminogen (Pg) ligand in fibrinolytic pathway FeoB_N PF02421.13 gi|352681462|ref|YP_004891986.1| - 2.2e-27 95.2 0.0 3e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|352681462|ref|YP_004891986.1| - 1e-23 83.2 17.2 7.4e-18 64.4 3.3 2.9 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|352681462|ref|YP_004891986.1| - 4e-15 55.8 0.0 5.9e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase TusA PF01206.12 gi|352681463|ref|YP_004891987.1| - 2e-11 43.2 0.0 2.2e-11 43.1 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|352681463|ref|YP_004891987.1| - 0.0003 20.2 0.1 0.00089 18.7 0.0 1.8 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) McrBC PF10117.4 gi|352681464|ref|YP_004891988.1| - 0.027 13.3 0.0 0.042 12.7 0.0 1.4 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.9 gi|352681465|ref|YP_004891989.1| - 5e-16 58.6 0.0 4e-15 55.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|352681465|ref|YP_004891989.1| - 2e-07 31.2 0.0 7.1e-05 22.8 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|352681465|ref|YP_004891989.1| - 3.5e-07 30.4 0.0 6.7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|352681465|ref|YP_004891989.1| - 4.4e-07 30.1 0.0 1.1e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352681465|ref|YP_004891989.1| - 6.7e-06 26.9 0.1 2.2e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|352681465|ref|YP_004891989.1| - 4.7e-05 23.6 0.0 0.00011 22.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|352681465|ref|YP_004891989.1| - 8.2e-05 22.2 0.0 0.012 15.2 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|352681465|ref|YP_004891989.1| - 0.0002 21.2 0.0 0.00045 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|352681465|ref|YP_004891989.1| - 0.0002 20.8 0.0 0.0025 17.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|352681465|ref|YP_004891989.1| - 0.00069 19.5 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|352681465|ref|YP_004891989.1| - 0.0011 18.4 0.2 0.0044 16.4 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352681465|ref|YP_004891989.1| - 0.0015 18.2 0.2 0.0036 17.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain RuvB_N PF05496.7 gi|352681465|ref|YP_004891989.1| - 0.002 17.2 0.0 0.0035 16.4 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|352681465|ref|YP_004891989.1| - 0.0067 16.0 0.0 0.048 13.3 0.0 2.1 2 0 0 2 2 2 1 NACHT domain NTPase_1 PF03266.10 gi|352681465|ref|YP_004891989.1| - 0.0072 16.0 0.1 0.029 14.0 0.0 1.9 1 1 0 2 2 2 1 NTPase AAA_24 PF13479.1 gi|352681465|ref|YP_004891989.1| - 0.013 15.0 0.1 0.026 14.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|352681465|ref|YP_004891989.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|352681465|ref|YP_004891989.1| - 0.018 14.9 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|352681465|ref|YP_004891989.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|352681465|ref|YP_004891989.1| - 0.029 14.5 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|352681465|ref|YP_004891989.1| - 0.051 12.6 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin TIP49 PF06068.8 gi|352681465|ref|YP_004891989.1| - 0.066 11.9 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus KTI12 PF08433.5 gi|352681465|ref|YP_004891989.1| - 0.1 11.8 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|352681465|ref|YP_004891989.1| - 0.1 12.0 0.0 0.31 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain UPF0079 PF02367.12 gi|352681465|ref|YP_004891989.1| - 0.12 12.0 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|352681465|ref|YP_004891989.1| - 0.14 11.6 0.1 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain KaiC PF06745.8 gi|352681465|ref|YP_004891989.1| - 0.16 11.0 0.0 0.31 10.1 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_11 PF13086.1 gi|352681465|ref|YP_004891989.1| - 0.16 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|352681465|ref|YP_004891989.1| - 0.22 10.9 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF2276 PF10040.4 gi|352681467|ref|YP_004891991.1| - 8.8e-19 67.9 0.0 1.2e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HD PF01966.17 gi|352681468|ref|YP_004891992.1| - 5.8e-06 26.3 0.1 7.4e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 HD domain HEAT PF02985.17 gi|352681468|ref|YP_004891992.1| - 0.11 12.6 0.7 2.2 8.6 0.2 2.4 2 0 0 2 2 2 0 HEAT repeat DEAD PF00270.24 gi|352681469|ref|YP_004891993.1| - 1e-08 34.9 0.0 2e-07 30.6 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|352681469|ref|YP_004891993.1| - 1.9e-07 31.1 0.0 3.2e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|352681469|ref|YP_004891993.1| - 0.00055 19.7 0.3 0.0016 18.2 0.2 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Cas_Cas5d PF09704.5 gi|352681470|ref|YP_004891994.1| - 0.0053 16.4 0.3 0.063 12.8 0.2 2.1 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) ShK PF01549.19 gi|352681470|ref|YP_004891994.1| - 0.2 12.0 0.2 0.34 11.3 0.1 1.3 1 0 0 1 1 1 0 ShK domain-like DevR PF01905.11 gi|352681471|ref|YP_004891995.1| - 9.5e-76 254.1 0.0 1.1e-75 253.9 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 IncA PF04156.9 gi|352681473|ref|YP_004891997.1| - 0.0024 17.5 0.5 0.0027 17.3 0.3 1.1 1 0 0 1 1 1 1 IncA protein DUF948 PF06103.6 gi|352681473|ref|YP_004891997.1| - 0.0025 17.6 1.7 0.0052 16.6 1.2 1.5 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) MitMem_reg PF13012.1 gi|352681473|ref|YP_004891997.1| - 0.0032 17.5 1.2 0.0045 17.0 0.8 1.4 1 1 0 1 1 1 1 Maintenance of mitochondrial structure and function TelA PF05816.6 gi|352681473|ref|YP_004891997.1| - 0.0038 15.9 2.6 0.0038 15.9 1.8 1.6 1 1 1 2 2 2 1 Toxic anion resistance protein (TelA) Reo_sigmaC PF04582.7 gi|352681473|ref|YP_004891997.1| - 0.0052 16.0 0.4 0.0058 15.8 0.3 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein IFT57 PF10498.4 gi|352681473|ref|YP_004891997.1| - 0.0067 15.2 0.9 0.0079 14.9 0.6 1.0 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Tropomyosin PF00261.15 gi|352681473|ref|YP_004891997.1| - 0.007 15.4 2.7 0.0087 15.1 1.9 1.3 1 1 0 1 1 1 1 Tropomyosin DUF489 PF04356.7 gi|352681473|ref|YP_004891997.1| - 0.0087 15.6 1.3 0.011 15.3 0.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF489) HTH_AsnC-type PF13404.1 gi|352681473|ref|YP_004891997.1| - 0.013 15.0 4.2 0.038 13.5 0.1 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain LUC7 PF03194.10 gi|352681473|ref|YP_004891997.1| - 0.013 15.0 1.5 0.015 14.8 1.1 1.1 1 0 0 1 1 1 0 LUC7 N_terminus Transcrip_act PF04949.8 gi|352681473|ref|YP_004891997.1| - 0.013 15.1 2.6 0.015 14.9 1.8 1.3 1 1 0 1 1 1 0 Transcriptional activator DUF1664 PF07889.7 gi|352681473|ref|YP_004891997.1| - 0.014 15.1 1.8 0.019 14.7 1.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) YjcZ PF13990.1 gi|352681473|ref|YP_004891997.1| - 0.017 14.2 1.2 0.02 14.0 0.8 1.1 1 0 0 1 1 1 0 YjcZ-like protein Laminin_II PF06009.7 gi|352681473|ref|YP_004891997.1| - 0.02 14.6 1.5 0.02 14.6 1.0 1.6 1 1 1 2 2 2 0 Laminin Domain II CorA PF01544.13 gi|352681473|ref|YP_004891997.1| - 0.022 13.8 1.0 0.027 13.5 0.7 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein UPF0184 PF03670.8 gi|352681473|ref|YP_004891997.1| - 0.028 14.5 1.3 0.052 13.7 0.8 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0184) NPV_P10 PF05531.7 gi|352681473|ref|YP_004891997.1| - 0.028 14.6 3.7 0.095 12.9 2.6 2.0 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein TMP_2 PF06791.8 gi|352681473|ref|YP_004891997.1| - 0.034 13.7 0.5 0.039 13.5 0.4 1.1 1 0 0 1 1 1 0 Prophage tail length tape measure protein DUF4577 PF15145.1 gi|352681473|ref|YP_004891997.1| - 0.035 14.0 1.8 0.06 13.2 1.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4577) DUF816 PF05674.7 gi|352681473|ref|YP_004891997.1| - 0.038 13.7 0.7 0.048 13.3 0.5 1.1 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF816) Baculo_PEP_C PF04513.7 gi|352681473|ref|YP_004891997.1| - 0.042 13.6 2.6 0.075 12.8 1.8 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus FliJ PF02050.11 gi|352681473|ref|YP_004891997.1| - 0.048 13.7 2.7 0.46 10.5 0.1 2.0 1 1 1 2 2 2 0 Flagellar FliJ protein DUF445 PF04286.7 gi|352681473|ref|YP_004891997.1| - 0.053 13.0 1.6 0.062 12.8 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF2397 PF09660.5 gi|352681473|ref|YP_004891997.1| - 0.054 12.0 1.6 0.065 11.8 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2397) MscS_porin PF12795.2 gi|352681473|ref|YP_004891997.1| - 0.058 12.7 0.4 0.058 12.7 0.3 1.8 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain MtrG PF04210.8 gi|352681473|ref|YP_004891997.1| - 0.059 13.0 1.3 0.78 9.4 0.7 2.3 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G SNARE PF05739.14 gi|352681473|ref|YP_004891997.1| - 0.065 12.9 3.3 0.29 10.8 1.6 2.3 1 1 1 2 2 2 0 SNARE domain Occludin_ELL PF07303.8 gi|352681473|ref|YP_004891997.1| - 0.068 13.9 1.0 0.15 12.7 0.6 1.8 1 1 0 1 1 1 0 Occludin homology domain DASH_Dad4 PF08650.5 gi|352681473|ref|YP_004891997.1| - 0.07 13.0 0.2 0.21 11.4 0.1 1.8 1 1 0 1 1 1 0 DASH complex subunit Dad4 Hemerythrin PF01814.18 gi|352681473|ref|YP_004891997.1| - 0.074 13.2 0.6 0.11 12.5 0.4 1.4 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Nsp1_C PF05064.8 gi|352681473|ref|YP_004891997.1| - 0.079 12.6 0.6 0.13 11.8 0.4 1.4 1 0 0 1 1 1 0 Nsp1-like C-terminal region COG2 PF06148.6 gi|352681473|ref|YP_004891997.1| - 0.086 12.7 0.7 0.14 12.0 0.2 1.5 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Atg14 PF10186.4 gi|352681473|ref|YP_004891997.1| - 0.087 11.7 1.3 0.1 11.5 0.9 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TBPIP PF07106.8 gi|352681473|ref|YP_004891997.1| - 0.094 12.2 4.0 0.19 11.2 1.4 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) WXG100 PF06013.7 gi|352681473|ref|YP_004891997.1| - 0.094 12.7 1.1 1.2 9.2 0.0 2.6 1 1 1 2 2 2 0 Proteins of 100 residues with WXG ApoLp-III PF07464.6 gi|352681473|ref|YP_004891997.1| - 0.1 12.6 5.1 0.7 9.8 3.6 2.0 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DASH_Dam1 PF08653.5 gi|352681473|ref|YP_004891997.1| - 0.1 12.3 0.3 0.28 10.9 0.1 1.8 1 1 1 2 2 2 0 DASH complex subunit Dam1 DUF892 PF05974.7 gi|352681473|ref|YP_004891997.1| - 0.12 12.2 2.5 0.72 9.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF892) TMCO5 PF14992.1 gi|352681473|ref|YP_004891997.1| - 0.13 11.3 3.6 0.57 9.2 2.5 1.7 1 1 0 1 1 1 0 TMCO5 family DivIVA PF05103.8 gi|352681473|ref|YP_004891997.1| - 0.13 12.2 2.3 0.13 12.3 0.4 1.8 1 1 1 2 2 2 0 DivIVA protein Spectrin PF00435.16 gi|352681473|ref|YP_004891997.1| - 0.15 12.3 1.2 0.26 11.5 0.2 1.8 2 1 0 2 2 1 0 Spectrin repeat Cauli_DNA-bind PF03310.8 gi|352681473|ref|YP_004891997.1| - 0.16 11.8 1.3 0.58 10.0 0.2 1.9 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein Hemagglutinin PF00509.13 gi|352681473|ref|YP_004891997.1| - 0.18 9.9 1.9 0.22 9.6 1.3 1.0 1 0 0 1 1 1 0 Haemagglutinin HAUS-augmin3 PF14932.1 gi|352681473|ref|YP_004891997.1| - 0.21 10.7 2.3 0.26 10.4 1.6 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Fib_alpha PF08702.5 gi|352681473|ref|YP_004891997.1| - 0.22 11.6 1.3 0.25 11.4 0.4 1.5 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family TACC PF05010.9 gi|352681473|ref|YP_004891997.1| - 0.26 11.0 2.9 0.7 9.6 1.9 1.6 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) PhageMin_Tail PF10145.4 gi|352681473|ref|YP_004891997.1| - 0.28 10.8 3.5 0.48 10.0 2.4 1.3 1 1 0 1 1 1 0 Phage-related minor tail protein DUF2216 PF10226.4 gi|352681473|ref|YP_004891997.1| - 0.47 9.9 3.9 1.3 8.5 2.7 1.7 1 1 0 1 1 1 0 Uncharacterized conserved proteins (DUF2216) DUF3731 PF12531.3 gi|352681473|ref|YP_004891997.1| - 0.48 9.9 2.7 1.3 8.4 1.0 1.8 1 1 1 2 2 2 0 DNA-K related protein SlyX PF04102.7 gi|352681473|ref|YP_004891997.1| - 0.7 10.3 2.6 3.8 7.9 0.3 2.4 1 1 1 2 2 2 0 SlyX HR1 PF02185.11 gi|352681473|ref|YP_004891997.1| - 1.5 8.6 5.6 14 5.4 3.9 2.7 1 1 0 1 1 1 0 Hr1 repeat XhlA PF10779.4 gi|352681473|ref|YP_004891997.1| - 3 7.8 7.4 0.85 9.5 2.6 1.9 2 0 0 2 2 2 0 Haemolysin XhlA DNA_processg_A PF02481.10 gi|352681474|ref|YP_004891998.1| - 3e-36 124.3 0.0 3.7e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A Pribosyltran PF00156.22 gi|352681475|ref|YP_004891999.1| - 1.7e-10 40.7 0.2 3.3e-10 39.7 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_3 PF15610.1 gi|352681475|ref|YP_004891999.1| - 0.0032 16.4 0.0 0.0048 15.8 0.0 1.2 1 0 0 1 1 1 1 PRTase ComF-like UPRTase PF14681.1 gi|352681475|ref|YP_004891999.1| - 0.0086 15.3 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Prok-RING_4 PF14447.1 gi|352681475|ref|YP_004891999.1| - 0.1 12.1 0.4 0.2 11.2 0.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zf-ribbon_3 PF13248.1 gi|352681475|ref|YP_004891999.1| - 0.11 11.7 1.0 0.21 10.8 0.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352681475|ref|YP_004891999.1| - 0.16 11.5 1.7 0.31 10.5 1.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|352681475|ref|YP_004891999.1| - 0.43 10.3 1.9 0.66 9.7 0.6 1.9 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Proteasome PF00227.21 gi|352681477|ref|YP_004892001.1| - 6.9e-05 22.2 0.0 0.00046 19.5 0.0 2.0 2 0 0 2 2 2 1 Proteasome subunit DUF3471 PF11954.3 gi|352681480|ref|YP_004892004.1| - 0.0088 15.8 0.0 0.28 11.0 0.0 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF3471) HpaB PF03241.8 gi|352681480|ref|YP_004892004.1| - 0.085 11.6 0.1 0.24 10.2 0.0 1.8 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase C terminal DUF4177 PF13783.1 gi|352681481|ref|YP_004892005.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4177) Radical_SAM PF04055.16 gi|352681482|ref|YP_004892006.1| - 9.2e-14 51.9 0.0 2.8e-13 50.3 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily QRPTase_C PF01729.14 gi|352681483|ref|YP_004892007.1| - 1.7e-36 125.3 0.1 2.3e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|352681483|ref|YP_004892007.1| - 8.7e-20 70.3 0.6 1.9e-19 69.2 0.4 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain B12-binding PF02310.14 gi|352681483|ref|YP_004892007.1| - 0.075 12.9 6.0 0.26 11.1 0.9 2.4 2 1 0 2 2 2 0 B12 binding domain DUF1641 PF07849.6 gi|352681485|ref|YP_004892009.1| - 3 7.5 5.1 5.1 6.7 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1641) DUF4153 PF13687.1 gi|352681485|ref|YP_004892009.1| - 7.2 6.0 14.2 42 3.5 9.7 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4153) ABC_tran PF00005.22 gi|352681486|ref|YP_004892010.1| - 2.1e-16 60.4 0.0 3.2e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681486|ref|YP_004892010.1| - 2.2e-10 41.0 0.0 3.1e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352681486|ref|YP_004892010.1| - 1.8e-08 33.8 0.0 0.0003 20.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681486|ref|YP_004892010.1| - 8.9e-07 28.3 0.0 1.7e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|352681486|ref|YP_004892010.1| - 6.4e-06 26.6 0.0 8.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352681486|ref|YP_004892010.1| - 0.00015 21.3 0.3 0.0011 18.7 0.1 2.2 2 1 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|352681486|ref|YP_004892010.1| - 0.00043 19.7 0.0 0.00067 19.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|352681486|ref|YP_004892010.1| - 0.0013 17.8 0.0 0.023 13.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|352681486|ref|YP_004892010.1| - 0.0013 18.8 0.0 0.0018 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|352681486|ref|YP_004892010.1| - 0.0028 17.3 0.1 0.0063 16.1 0.0 1.6 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|352681486|ref|YP_004892010.1| - 0.007 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|352681486|ref|YP_004892010.1| - 0.0077 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681486|ref|YP_004892010.1| - 0.011 15.7 0.1 0.018 15.0 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|352681486|ref|YP_004892010.1| - 0.02 13.4 0.0 0.083 11.4 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|352681486|ref|YP_004892010.1| - 0.029 12.8 0.0 0.037 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|352681486|ref|YP_004892010.1| - 0.031 13.1 0.0 0.045 12.6 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.14 gi|352681486|ref|YP_004892010.1| - 0.04 13.3 0.1 0.06 12.7 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|352681486|ref|YP_004892010.1| - 0.05 13.0 0.1 0.058 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|352681486|ref|YP_004892010.1| - 0.056 12.6 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF3584 PF12128.3 gi|352681486|ref|YP_004892010.1| - 0.059 10.7 0.1 0.086 10.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FtsK_SpoIIIE PF01580.13 gi|352681486|ref|YP_004892010.1| - 0.089 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|352681486|ref|YP_004892010.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|352681486|ref|YP_004892010.1| - 0.14 12.1 0.1 0.34 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|352681486|ref|YP_004892010.1| - 0.17 12.4 0.0 0.26 11.8 0.0 1.2 1 0 0 1 1 1 0 Miro-like protein ABC_tran PF00005.22 gi|352681487|ref|YP_004892011.1| - 2.9e-27 95.6 0.0 3.8e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681487|ref|YP_004892011.1| - 8.5e-11 42.3 0.2 1.1e-08 35.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|352681487|ref|YP_004892011.1| - 4.8e-08 32.4 0.0 0.0024 17.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681487|ref|YP_004892011.1| - 1.6e-06 27.5 0.0 2.8e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|352681487|ref|YP_004892011.1| - 0.00042 20.7 0.0 0.00061 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|352681487|ref|YP_004892011.1| - 0.002 17.6 0.1 0.0035 16.8 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|352681487|ref|YP_004892011.1| - 0.002 18.1 0.6 0.0066 16.4 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|352681487|ref|YP_004892011.1| - 0.0023 18.0 0.3 0.016 15.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|352681487|ref|YP_004892011.1| - 0.0027 17.5 0.1 0.035 14.0 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|352681487|ref|YP_004892011.1| - 0.0051 16.2 0.0 0.0083 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|352681487|ref|YP_004892011.1| - 0.01 15.5 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_15 PF13175.1 gi|352681487|ref|YP_004892011.1| - 0.012 14.7 0.0 3.7 6.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|352681487|ref|YP_004892011.1| - 0.033 13.8 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|352681487|ref|YP_004892011.1| - 0.049 12.8 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|352681487|ref|YP_004892011.1| - 0.058 12.9 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|352681487|ref|YP_004892011.1| - 0.067 10.5 0.0 0.088 10.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_19 PF13245.1 gi|352681487|ref|YP_004892011.1| - 0.072 12.8 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|352681487|ref|YP_004892011.1| - 0.09 12.6 0.0 0.17 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|352681487|ref|YP_004892011.1| - 0.095 12.3 0.1 0.2 11.2 0.0 1.5 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.1 gi|352681487|ref|YP_004892011.1| - 0.11 10.9 0.0 0.17 10.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|352681487|ref|YP_004892011.1| - 0.14 12.3 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase DUF3987 PF13148.1 gi|352681487|ref|YP_004892011.1| - 0.16 10.5 0.0 0.23 9.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) RNA12 PF10443.4 gi|352681487|ref|YP_004892011.1| - 0.21 10.0 0.0 0.3 9.5 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein FecCD PF01032.13 gi|352681488|ref|YP_004892012.1| - 4.7e-72 242.4 44.4 5.8e-72 242.1 30.8 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|352681490|ref|YP_004892014.1| - 2.2e-21 76.0 0.0 3.4e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TrbE PF11100.3 gi|352681490|ref|YP_004892014.1| - 0.01 15.6 0.1 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 Conjugal transfer protein TrbE SSP160 PF06933.6 gi|352681490|ref|YP_004892014.1| - 0.28 9.1 5.0 0.42 8.5 3.4 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF364 PF04016.7 gi|352681491|ref|YP_004892015.1| - 5.2e-35 119.9 0.0 7.5e-35 119.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|352681491|ref|YP_004892015.1| - 1.2e-17 63.8 0.0 2e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) Peptidase_M19 PF01244.16 gi|352681492|ref|YP_004892016.1| - 1.9e-76 257.0 0.0 2.2e-76 256.8 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|352681492|ref|YP_004892016.1| - 8.5e-05 22.2 0.1 0.00018 21.1 0.1 1.4 1 1 0 1 1 1 1 Amidohydrolase DUF4253 PF14062.1 gi|352681492|ref|YP_004892016.1| - 0.073 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) LigA PF07746.6 gi|352681494|ref|YP_004892018.1| - 0.011 15.7 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DsrC PF04358.8 gi|352681494|ref|YP_004892018.1| - 0.048 13.9 0.0 0.066 13.4 0.0 1.2 1 0 0 1 1 1 0 DsrC like protein NAD_kinase PF01513.16 gi|352681495|ref|YP_004892019.1| - 8.7e-19 67.3 0.0 1.1e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase TrmB PF01978.14 gi|352681495|ref|YP_004892019.1| - 5.4e-09 35.6 0.2 1.2e-08 34.5 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.6 gi|352681495|ref|YP_004892019.1| - 2.4e-05 24.1 0.0 4.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.2 gi|352681495|ref|YP_004892019.1| - 2.6e-05 23.9 2.4 0.00017 21.3 0.2 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|352681495|ref|YP_004892019.1| - 3.1e-05 23.2 0.6 0.0003 20.0 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|352681495|ref|YP_004892019.1| - 4.5e-05 23.0 0.0 0.00015 21.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|352681495|ref|YP_004892019.1| - 0.00038 20.2 0.0 0.00071 19.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|352681495|ref|YP_004892019.1| - 0.0006 19.8 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|352681495|ref|YP_004892019.1| - 0.00062 19.3 3.2 0.0031 17.1 0.2 2.8 3 0 0 3 3 2 1 MarR family HTH_IclR PF09339.5 gi|352681495|ref|YP_004892019.1| - 0.0023 17.5 1.4 0.0043 16.5 0.4 1.9 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|352681495|ref|YP_004892019.1| - 0.0028 17.4 0.2 0.0088 15.8 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|352681495|ref|YP_004892019.1| - 0.0082 16.2 0.0 0.034 14.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|352681495|ref|YP_004892019.1| - 0.025 14.2 0.4 0.087 12.4 0.0 2.0 2 0 0 2 2 2 0 HTH domain HTH_CodY PF08222.6 gi|352681495|ref|YP_004892019.1| - 0.032 13.5 0.1 0.076 12.3 0.1 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|352681495|ref|YP_004892019.1| - 0.042 14.1 0.0 0.15 12.3 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|352681495|ref|YP_004892019.1| - 0.053 12.9 0.9 0.1 12.0 0.6 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|352681495|ref|YP_004892019.1| - 0.057 13.5 0.1 0.18 12.0 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein HTH_23 PF13384.1 gi|352681495|ref|YP_004892019.1| - 0.063 12.9 0.1 0.24 11.0 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain RepL PF05732.6 gi|352681495|ref|YP_004892019.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Lyase_1 PF00206.15 gi|352681496|ref|YP_004892020.1| - 5.9e-32 111.1 0.0 7.8e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|352681496|ref|YP_004892020.1| - 0.051 13.5 0.0 0.19 11.7 0.0 2.0 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus DUF2299 PF10061.4 gi|352681497|ref|YP_004892021.1| - 2.8e-41 140.1 0.0 3.1e-41 140.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) FlgD_ig PF13860.1 gi|352681498|ref|YP_004892022.1| - 0.0065 16.1 0.2 0.042 13.5 0.1 2.4 2 0 0 2 2 2 1 FlgD Ig-like domain NAD_binding_9 PF13454.1 gi|352681499|ref|YP_004892023.1| - 1.3e-05 25.0 0.0 0.0059 16.4 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|352681499|ref|YP_004892023.1| - 0.0027 17.6 0.0 0.0059 16.4 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352681499|ref|YP_004892023.1| - 0.0048 15.8 0.0 0.0085 15.0 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|352681499|ref|YP_004892023.1| - 0.01 14.7 0.0 0.017 14.0 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|352681499|ref|YP_004892023.1| - 0.012 15.5 0.0 0.03 14.3 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|352681499|ref|YP_004892023.1| - 0.059 11.9 0.0 0.093 11.3 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase RHH_1 PF01402.16 gi|352681500|ref|YP_004892024.1| - 1.7e-07 30.8 0.3 2.2e-07 30.4 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|352681500|ref|YP_004892024.1| - 0.0029 17.7 0.0 0.0033 17.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) RHH_3 PF12651.2 gi|352681500|ref|YP_004892024.1| - 0.011 15.4 0.2 0.88 9.3 0.0 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix domain DUF1488 PF07369.6 gi|352681500|ref|YP_004892024.1| - 0.031 14.0 0.0 0.047 13.5 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1488) EamA PF00892.15 gi|352681501|ref|YP_004892025.1| - 8.8e-17 61.3 25.4 4.3e-09 36.4 7.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|352681501|ref|YP_004892025.1| - 1.4e-05 25.2 2.8 1.4e-05 25.2 1.9 3.3 2 2 1 3 3 3 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|352681501|ref|YP_004892025.1| - 0.026 14.3 1.2 6.5 6.6 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 Methyltransf_11 PF08241.7 gi|352681503|ref|YP_004892027.1| - 0.00017 21.9 0.0 0.00064 20.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352681503|ref|YP_004892027.1| - 0.0084 16.5 0.0 0.015 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MFS_1 PF07690.11 gi|352681505|ref|YP_004892029.1| - 9.2e-10 37.7 57.2 9.5e-10 37.7 34.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MCM PF00493.18 gi|352681506|ref|YP_004892030.1| - 5e-139 462.7 0.0 6.9e-139 462.2 0.0 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|352681506|ref|YP_004892030.1| - 1.4e-22 80.4 0.3 3.8e-22 79.0 0.2 1.8 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|352681506|ref|YP_004892030.1| - 9.1e-10 38.0 0.1 8.6e-07 28.3 0.0 2.5 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI Zn-ribbon_8 PF09723.5 gi|352681506|ref|YP_004892030.1| - 1.3e-06 28.2 1.2 2.5e-06 27.3 0.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain AAA_3 PF07726.6 gi|352681506|ref|YP_004892030.1| - 1.5e-06 27.8 0.1 7.2e-06 25.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|352681506|ref|YP_004892030.1| - 3.9e-06 26.6 0.0 1.1e-05 25.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|352681506|ref|YP_004892030.1| - 0.00024 20.6 0.1 0.0013 18.2 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|352681506|ref|YP_004892030.1| - 0.0024 18.0 0.1 0.018 15.2 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HypA PF01155.14 gi|352681506|ref|YP_004892030.1| - 0.043 13.4 0.2 0.093 12.4 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|352681506|ref|YP_004892030.1| - 0.088 12.3 4.1 0.5 9.9 2.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|352681506|ref|YP_004892030.1| - 0.13 12.0 1.0 6.9 6.5 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|352681506|ref|YP_004892030.1| - 0.17 11.7 0.8 0.31 10.8 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon AAA_16 PF13191.1 gi|352681506|ref|YP_004892030.1| - 0.2 11.6 2.5 4.4 7.2 0.1 3.3 3 1 0 3 3 3 0 AAA ATPase domain Rubredoxin PF00301.15 gi|352681506|ref|YP_004892030.1| - 2.7 7.9 6.1 16 5.4 4.3 2.1 1 1 0 1 1 1 0 Rubredoxin Thioredoxin_4 PF13462.1 gi|352681507|ref|YP_004892031.1| - 2.5e-07 30.8 0.0 4.4e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin DUF4514 PF14986.1 gi|352681507|ref|YP_004892031.1| - 0.073 12.8 2.7 0.31 10.8 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) FixH PF05751.6 gi|352681507|ref|YP_004892031.1| - 0.46 10.2 2.6 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 FixH MFS_1 PF07690.11 gi|352681508|ref|YP_004892032.1| - 1.3e-10 40.6 37.0 1.1e-09 37.5 8.7 2.3 2 0 0 2 2 2 2 Major Facilitator Superfamily AMP-binding PF00501.23 gi|352681509|ref|YP_004892033.1| - 1.3e-52 178.6 0.1 9.7e-52 175.7 0.1 1.9 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352681509|ref|YP_004892033.1| - 0.037 14.9 1.4 0.27 12.1 1.5 2.1 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain DUF996 PF06195.8 gi|352681510|ref|YP_004892034.1| - 4.5e-22 78.5 23.3 4.5e-22 78.5 16.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF308 PF03729.8 gi|352681510|ref|YP_004892034.1| - 0.0038 17.1 7.9 0.0038 17.1 5.5 3.8 1 1 3 4 4 4 1 Short repeat of unknown function (DUF308) Pox_A14 PF05767.7 gi|352681510|ref|YP_004892034.1| - 0.19 11.6 17.0 0.56 10.1 0.3 3.5 3 1 0 3 3 3 0 Poxvirus virion envelope protein A14 DUF3671 PF12420.3 gi|352681510|ref|YP_004892034.1| - 9.8 6.2 15.9 4 7.4 3.8 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF4129 PF13559.1 gi|352681511|ref|YP_004892035.1| - 1e-06 28.5 3.9 1e-06 28.5 2.7 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) VMA21 PF09446.5 gi|352681512|ref|YP_004892036.1| - 0.47 10.4 7.3 0.94 9.4 0.0 3.4 3 0 0 3 3 3 0 VMA21-like domain AAA_3 PF07726.6 gi|352681513|ref|YP_004892037.1| - 5.8e-65 216.8 0.0 9.2e-65 216.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|352681513|ref|YP_004892037.1| - 7.4e-13 48.4 0.0 3.9e-12 46.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|352681513|ref|YP_004892037.1| - 5.7e-06 25.9 0.0 4.9e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|352681513|ref|YP_004892037.1| - 3.1e-05 22.9 0.0 0.00063 18.6 0.0 2.3 1 1 0 1 1 1 1 MCM2/3/5 family RuvB_N PF05496.7 gi|352681513|ref|YP_004892037.1| - 0.00034 19.7 0.5 0.0026 16.8 0.0 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|352681513|ref|YP_004892037.1| - 0.00037 20.6 0.0 0.00082 19.5 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|352681513|ref|YP_004892037.1| - 0.00073 18.7 0.4 0.43 9.7 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|352681513|ref|YP_004892037.1| - 0.0026 18.5 0.2 0.0086 16.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|352681513|ref|YP_004892037.1| - 0.007 16.2 0.0 0.18 11.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_18 PF13238.1 gi|352681513|ref|YP_004892037.1| - 0.047 13.9 0.0 0.23 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF58 PF01882.13 gi|352681514|ref|YP_004892038.1| - 2.9e-23 81.7 0.0 8.4e-23 80.3 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 Sugar_tr PF00083.19 gi|352681517|ref|YP_004892041.1| - 5e-35 120.9 19.7 5.6e-35 120.7 13.6 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|352681517|ref|YP_004892041.1| - 9e-24 83.8 45.0 1.3e-19 70.1 17.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2365 PF10157.4 gi|352681518|ref|YP_004892042.1| - 0.062 13.1 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2365) ThiC PF01964.13 gi|352681519|ref|YP_004892043.1| - 3.9e-159 529.6 0.0 4.5e-159 529.4 0.0 1.0 1 0 0 1 1 1 1 ThiC family SOR_SNZ PF01680.12 gi|352681520|ref|YP_004892044.1| - 9.3e-88 293.2 2.8 1.3e-87 292.7 1.9 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|352681520|ref|YP_004892044.1| - 2.1e-06 27.0 2.9 3.4e-06 26.3 0.1 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|352681520|ref|YP_004892044.1| - 0.0017 17.6 1.0 1.9 7.7 0.0 3.1 2 1 1 3 3 3 2 Histidine biosynthesis protein Dus PF01207.12 gi|352681520|ref|YP_004892044.1| - 0.002 17.0 0.3 0.14 11.0 0.0 2.6 2 1 0 2 2 2 1 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|352681520|ref|YP_004892044.1| - 0.003 16.6 0.0 0.03 13.3 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|352681520|ref|YP_004892044.1| - 0.0044 16.2 5.5 0.0046 16.1 0.2 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.9 gi|352681520|ref|YP_004892044.1| - 0.0061 15.5 0.5 0.093 11.6 0.0 2.4 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|352681520|ref|YP_004892044.1| - 0.0073 14.8 0.0 0.26 9.7 0.0 2.6 2 1 1 3 3 3 1 Tryptophan synthase alpha chain OMPdecase PF00215.19 gi|352681520|ref|YP_004892044.1| - 0.057 12.7 0.4 0.57 9.5 0.0 2.5 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family FMN_dh PF01070.13 gi|352681520|ref|YP_004892044.1| - 0.22 10.3 2.1 0.42 9.4 0.1 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase SNO PF01174.14 gi|352681521|ref|YP_004892045.1| - 3.4e-48 163.7 0.0 4e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|352681521|ref|YP_004892045.1| - 6e-11 42.1 0.0 1e-10 41.4 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|352681521|ref|YP_004892045.1| - 2.3e-09 37.1 0.0 2.9e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|352681521|ref|YP_004892045.1| - 2.9e-07 30.1 0.0 4.8e-05 22.8 0.0 2.0 2 0 0 2 2 2 2 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|352681521|ref|YP_004892045.1| - 0.00016 21.1 0.1 0.0016 17.9 0.0 2.0 2 0 0 2 2 2 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|352681521|ref|YP_004892045.1| - 0.00046 19.5 0.1 0.00074 18.8 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase HTH_IclR PF09339.5 gi|352681521|ref|YP_004892045.1| - 1.2 8.7 3.9 25 4.5 0.1 3.4 3 1 0 3 3 3 0 IclR helix-turn-helix domain Cob_adeno_trans PF01923.13 gi|352681522|ref|YP_004892046.1| - 1.4e-18 67.2 0.0 1.6e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase TPR_7 PF13176.1 gi|352681522|ref|YP_004892046.1| - 0.088 12.6 0.0 0.32 10.9 0.0 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|352681522|ref|YP_004892046.1| - 0.18 11.7 5.7 3.2 7.7 0.1 3.1 2 1 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|352681522|ref|YP_004892046.1| - 4.2 8.2 0.0 4.2 8.2 0.0 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat Fer4_14 PF13394.1 gi|352681523|ref|YP_004892047.1| - 1.5e-19 70.2 0.0 2.3e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|352681523|ref|YP_004892047.1| - 1.3e-17 64.4 0.1 1.7e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|352681523|ref|YP_004892047.1| - 2.5e-11 43.8 0.0 3.8e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4224 PF13986.1 gi|352681523|ref|YP_004892047.1| - 0.019 14.5 0.0 2.9 7.5 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) RibD_C PF01872.12 gi|352681523|ref|YP_004892047.1| - 0.046 13.3 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 RibD C-terminal domain QRPTase_C PF01729.14 gi|352681524|ref|YP_004892048.1| - 7.2e-60 201.3 2.2 9e-60 201.0 1.5 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|352681524|ref|YP_004892048.1| - 5.2e-20 71.0 0.0 1.2e-19 69.9 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Glu_synthase PF01645.12 gi|352681524|ref|YP_004892048.1| - 0.0092 14.9 0.1 0.043 12.7 0.0 1.9 2 0 0 2 2 2 1 Conserved region in glutamate synthase FAD_binding_2 PF00890.19 gi|352681525|ref|YP_004892049.1| - 4.2e-64 216.9 12.2 5e-64 216.6 8.4 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|352681525|ref|YP_004892049.1| - 1.8e-11 43.6 10.4 8.5e-10 38.0 7.2 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.15 gi|352681525|ref|YP_004892049.1| - 9.2e-08 31.9 0.0 0.0025 17.6 0.0 2.4 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|352681525|ref|YP_004892049.1| - 1.6e-05 24.8 10.0 0.00024 21.0 6.9 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|352681525|ref|YP_004892049.1| - 6.3e-05 22.0 4.3 0.00067 18.6 3.0 2.1 1 1 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|352681525|ref|YP_004892049.1| - 0.00019 21.5 0.0 0.00046 20.2 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|352681525|ref|YP_004892049.1| - 0.0023 16.5 2.1 0.048 12.1 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|352681525|ref|YP_004892049.1| - 0.013 15.2 1.9 0.12 12.1 0.8 2.7 2 1 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|352681525|ref|YP_004892049.1| - 0.076 13.4 1.6 3.5 8.0 0.3 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|352681525|ref|YP_004892049.1| - 0.18 10.7 1.1 0.81 8.5 0.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NadA PF02445.11 gi|352681526|ref|YP_004892050.1| - 5.4e-104 347.1 0.0 6e-104 346.9 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Mito_fiss_reg PF05308.6 gi|352681527|ref|YP_004892051.1| - 0.21 10.9 6.6 0.35 10.2 4.6 1.3 1 0 0 1 1 1 0 Mitochondrial fission regulator CAP_N PF01213.14 gi|352681527|ref|YP_004892051.1| - 1.8 7.7 7.9 3.2 6.9 5.4 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal PALP PF00291.20 gi|352681528|ref|YP_004892052.1| - 8.3e-34 117.1 0.0 1e-33 116.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PmbA_TldD PF01523.11 gi|352681529|ref|YP_004892053.1| - 1.6e-33 116.2 1.0 2.1e-33 115.8 0.7 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|352681530|ref|YP_004892054.1| - 9.6e-58 195.7 1.6 1.2e-57 195.4 1.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ribosomal_L5_C PF00673.16 gi|352681531|ref|YP_004892055.1| - 4.9e-24 83.8 0.0 7.9e-24 83.2 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|352681531|ref|YP_004892055.1| - 2.2e-15 56.1 0.0 4.2e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 ATP_bind_4 PF01902.12 gi|352681532|ref|YP_004892056.1| - 9.6e-27 93.7 0.0 1.2e-26 93.4 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Usp PF00582.21 gi|352681532|ref|YP_004892056.1| - 0.0047 17.1 0.4 0.0065 16.6 0.3 1.2 1 0 0 1 1 1 1 Universal stress protein family Asn_synthase PF00733.16 gi|352681533|ref|YP_004892057.1| - 1e-34 120.1 0.0 1.8e-19 70.2 0.0 2.1 2 0 0 2 2 2 2 Asparagine synthase QueC PF06508.8 gi|352681533|ref|YP_004892057.1| - 0.0017 17.6 0.0 0.0033 16.7 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC AP_endonuc_2 PF01261.19 gi|352681533|ref|YP_004892057.1| - 0.036 13.3 0.2 0.25 10.6 0.2 2.2 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel tRNA_Me_trans PF03054.11 gi|352681533|ref|YP_004892057.1| - 0.21 10.1 0.0 0.33 9.4 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase zf-ribbon_3 PF13248.1 gi|352681533|ref|YP_004892057.1| - 1.2 8.4 5.1 4.5 6.6 3.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352681533|ref|YP_004892057.1| - 2.2 7.8 5.0 17 5.0 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Nfu_N PF08712.6 gi|352681534|ref|YP_004892058.1| - 0.031 13.8 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal HTH_24 PF13412.1 gi|352681535|ref|YP_004892059.1| - 8.9e-09 34.6 0.0 1.8e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|352681535|ref|YP_004892059.1| - 4e-07 29.6 0.2 4.2e-06 26.3 0.0 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|352681535|ref|YP_004892059.1| - 8e-06 25.4 0.0 1.7e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|352681535|ref|YP_004892059.1| - 1.1e-05 24.8 0.2 3.4e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|352681535|ref|YP_004892059.1| - 3.7e-05 23.3 0.1 0.00027 20.5 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|352681535|ref|YP_004892059.1| - 4.3e-05 23.2 0.1 0.00031 20.4 0.0 2.3 2 1 1 3 3 3 1 Helix-turn-helix domain MarR PF01047.17 gi|352681535|ref|YP_004892059.1| - 0.00097 18.8 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|352681535|ref|YP_004892059.1| - 0.002 17.7 0.0 0.0059 16.2 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|352681535|ref|YP_004892059.1| - 0.02 14.4 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|352681535|ref|YP_004892059.1| - 0.046 13.8 0.1 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|352681535|ref|YP_004892059.1| - 0.051 13.1 0.1 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain TRI5 PF06330.6 gi|352681535|ref|YP_004892059.1| - 0.068 11.8 0.0 0.075 11.6 0.0 1.1 1 0 0 1 1 1 0 Trichodiene synthase (TRI5) Penicillinase_R PF03965.11 gi|352681535|ref|YP_004892059.1| - 0.069 13.2 0.0 0.32 11.0 0.0 2.0 1 1 1 2 2 2 0 Penicillinase repressor HTH_45 PF14947.1 gi|352681535|ref|YP_004892059.1| - 0.07 12.9 0.3 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix GntR PF00392.16 gi|352681535|ref|YP_004892059.1| - 0.07 12.5 0.4 1.1 8.7 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF742 PF05331.6 gi|352681535|ref|YP_004892059.1| - 0.073 12.6 0.0 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) z-alpha PF02295.12 gi|352681535|ref|YP_004892059.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.6 1 1 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_23 PF13384.1 gi|352681535|ref|YP_004892059.1| - 0.29 10.8 2.4 0.55 9.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain AAA_22 PF13401.1 gi|352681537|ref|YP_004892061.1| - 6.2e-08 32.8 0.0 2.1e-07 31.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|352681537|ref|YP_004892061.1| - 1.3e-07 31.8 0.0 2.2e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|352681537|ref|YP_004892061.1| - 1.7e-06 28.8 0.0 6.2e-06 27.0 0.0 1.9 1 1 1 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|352681537|ref|YP_004892061.1| - 5.4e-06 26.3 0.0 1.2e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|352681537|ref|YP_004892061.1| - 1.1e-05 24.6 0.0 0.0024 17.0 0.0 2.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|352681537|ref|YP_004892061.1| - 2.5e-05 23.7 0.0 0.00012 21.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|352681537|ref|YP_004892061.1| - 3.2e-05 24.2 0.0 6e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|352681537|ref|YP_004892061.1| - 5.9e-05 22.8 0.0 0.00019 21.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|352681537|ref|YP_004892061.1| - 0.00017 21.4 0.0 0.00047 20.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681537|ref|YP_004892061.1| - 0.00041 20.3 0.0 0.0017 18.3 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|352681537|ref|YP_004892061.1| - 0.00048 19.8 0.0 0.0013 18.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|352681537|ref|YP_004892061.1| - 0.00057 19.5 0.1 0.0022 17.6 0.1 1.8 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|352681537|ref|YP_004892061.1| - 0.0011 17.7 0.0 0.0017 17.1 0.0 1.2 1 0 0 1 1 1 1 TIP49 C-terminus RuvB_N PF05496.7 gi|352681537|ref|YP_004892061.1| - 0.0018 17.4 0.0 0.0028 16.7 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Arch_ATPase PF01637.13 gi|352681537|ref|YP_004892061.1| - 0.0023 17.6 0.1 0.0039 16.9 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|352681537|ref|YP_004892061.1| - 0.0044 16.6 0.0 0.036 13.7 0.0 2.3 2 0 0 2 2 2 1 NACHT domain KTI12 PF08433.5 gi|352681537|ref|YP_004892061.1| - 0.0053 15.9 0.0 0.012 14.8 0.0 1.5 1 1 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|352681537|ref|YP_004892061.1| - 0.0067 15.5 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin RNA_helicase PF00910.17 gi|352681537|ref|YP_004892061.1| - 0.0079 16.3 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_23 PF13476.1 gi|352681537|ref|YP_004892061.1| - 0.011 16.0 0.3 0.021 15.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|352681537|ref|YP_004892061.1| - 0.017 14.7 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|352681537|ref|YP_004892061.1| - 0.02 14.0 0.0 0.3 10.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|352681537|ref|YP_004892061.1| - 0.039 13.3 0.1 0.081 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|352681537|ref|YP_004892061.1| - 0.046 13.1 0.1 0.55 9.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF2075 PF09848.4 gi|352681537|ref|YP_004892061.1| - 0.051 12.5 0.0 0.065 12.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_13 PF13166.1 gi|352681537|ref|YP_004892061.1| - 0.077 11.4 0.1 0.099 11.0 0.1 1.1 1 0 0 1 1 1 0 AAA domain CobU PF02283.11 gi|352681537|ref|YP_004892061.1| - 0.078 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_28 PF13521.1 gi|352681537|ref|YP_004892061.1| - 0.098 12.6 0.0 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|352681537|ref|YP_004892061.1| - 0.13 11.9 0.1 0.3 10.7 0.0 1.6 2 0 0 2 2 2 0 NTPase AAA_31 PF13614.1 gi|352681537|ref|YP_004892061.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|352681537|ref|YP_004892061.1| - 0.17 11.2 0.1 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF95 PF01944.12 gi|352681538|ref|YP_004892062.1| - 3.3e-14 52.9 11.0 4.3e-14 52.5 7.6 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 PBP PF01161.15 gi|352681539|ref|YP_004892063.1| - 3.7e-41 140.3 0.0 4.2e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein MFS_1 PF07690.11 gi|352681541|ref|YP_004892065.1| - 1.3e-09 37.2 53.0 1.7e-06 27.0 15.7 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily BtpA PF03437.10 gi|352681543|ref|YP_004892067.1| - 2.3e-74 249.8 0.0 2.8e-74 249.5 0.0 1.0 1 0 0 1 1 1 1 BtpA family Bac_luciferase PF00296.15 gi|352681543|ref|YP_004892067.1| - 0.027 13.5 0.4 0.063 12.3 0.3 1.9 1 1 0 1 1 1 0 Luciferase-like monooxygenase PEP_mutase PF13714.1 gi|352681543|ref|YP_004892067.1| - 0.053 12.7 0.4 0.71 9.0 0.3 2.1 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Asp_Glu_race PF01177.17 gi|352681543|ref|YP_004892067.1| - 0.056 13.3 0.1 0.79 9.5 0.1 2.6 2 1 0 2 2 2 0 Asp/Glu/Hydantoin racemase GatB_Yqey PF02637.13 gi|352681543|ref|YP_004892067.1| - 0.082 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 GatB domain DUF1952 PF09189.5 gi|352681545|ref|YP_004892069.1| - 0.0021 17.6 2.1 0.061 13.0 0.1 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF1952) ASCH PF04266.9 gi|352681547|ref|YP_004892071.1| - 8.8e-12 45.3 0.0 1.4e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 ASCH domain HTH_1 PF00126.22 gi|352681547|ref|YP_004892071.1| - 0.28 10.9 3.2 0.41 10.4 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family Radical_SAM PF04055.16 gi|352681548|ref|YP_004892072.1| - 3.3e-06 27.3 0.0 6.7e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily ECH PF00378.15 gi|352681550|ref|YP_004892074.1| - 4.6e-23 81.6 0.0 5.4e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF1403 PF07183.6 gi|352681550|ref|YP_004892074.1| - 0.021 14.2 0.5 2.7 7.2 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1403) Cytochrom_B_N_2 PF13631.1 gi|352681551|ref|YP_004892075.1| - 1.9e-40 138.3 6.0 1.9e-40 138.3 4.2 3.2 4 0 0 4 4 4 2 Cytochrome b(N-terminal)/b6/petB TOH_N PF12549.3 gi|352681551|ref|YP_004892075.1| - 2.4 7.8 5.8 5.2 6.7 4.0 1.6 1 0 0 1 1 1 0 Tyrosine hydroxylase N terminal Rieske PF00355.21 gi|352681552|ref|YP_004892076.1| - 2.2e-13 49.5 0.1 4.1e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain C-term_anchor PF13461.1 gi|352681552|ref|YP_004892076.1| - 0.14 12.5 1.1 22 5.5 0.0 2.6 3 0 0 3 3 3 0 Cell-wall surface anchor repeat EB_dh PF09459.5 gi|352681553|ref|YP_004892077.1| - 2.6e-64 217.2 1.5 3.3e-64 216.8 1.0 1.1 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Gemini_mov PF01708.11 gi|352681553|ref|YP_004892077.1| - 0.023 14.2 0.4 0.066 12.7 0.3 1.8 1 0 0 1 1 1 0 Geminivirus putative movement protein Mucin PF01456.12 gi|352681553|ref|YP_004892077.1| - 0.41 10.4 18.4 0.78 9.5 12.8 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF3439 PF11921.3 gi|352681553|ref|YP_004892077.1| - 0.45 10.2 11.5 0.97 9.1 8.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) Herpes_gE PF02480.11 gi|352681553|ref|YP_004892077.1| - 0.51 8.5 3.1 0.76 7.9 2.1 1.2 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E TMEM154 PF15102.1 gi|352681553|ref|YP_004892077.1| - 1.3 8.7 5.9 1.8 8.2 4.1 1.2 1 0 0 1 1 1 0 TMEM154 protein family HTH_20 PF12840.2 gi|352681555|ref|YP_004892079.1| - 3.2e-10 39.6 0.1 6.8e-10 38.6 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|352681555|ref|YP_004892079.1| - 4.2e-08 32.7 0.1 8.8e-08 31.6 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|352681555|ref|YP_004892079.1| - 5.8e-08 32.3 0.0 8.3e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|352681555|ref|YP_004892079.1| - 3e-05 24.0 0.0 4.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_12 PF08461.5 gi|352681555|ref|YP_004892079.1| - 7.7e-05 22.3 0.1 0.00013 21.5 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_11 PF08279.7 gi|352681555|ref|YP_004892079.1| - 0.00017 21.1 0.1 0.0011 18.5 0.0 2.0 2 0 0 2 2 2 1 HTH domain DUF4423 PF14394.1 gi|352681555|ref|YP_004892079.1| - 0.0072 15.8 0.0 0.0098 15.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_24 PF13412.1 gi|352681555|ref|YP_004892079.1| - 0.0082 15.5 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|352681555|ref|YP_004892079.1| - 0.0089 15.7 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|352681555|ref|YP_004892079.1| - 0.014 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|352681555|ref|YP_004892079.1| - 0.018 14.7 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|352681555|ref|YP_004892079.1| - 0.022 14.2 0.0 0.056 12.9 0.0 1.7 1 1 0 1 1 1 0 LexA DNA binding domain B-block_TFIIIC PF04182.7 gi|352681555|ref|YP_004892079.1| - 0.041 13.7 0.0 0.061 13.1 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_29 PF13551.1 gi|352681555|ref|YP_004892079.1| - 0.052 13.6 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.1 gi|352681555|ref|YP_004892079.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.15 gi|352681555|ref|YP_004892079.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|352681555|ref|YP_004892079.1| - 0.12 12.3 0.0 0.39 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TENA_THI-4 PF03070.11 gi|352681556|ref|YP_004892080.1| - 1.3e-12 47.8 0.0 2.1e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.11 gi|352681557|ref|YP_004892081.1| - 5.7e-50 169.9 0.0 6.5e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Ald_Xan_dh_C2 PF02738.13 gi|352681558|ref|YP_004892082.1| - 2.8e-103 346.1 0.0 3.6e-103 345.7 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|352681558|ref|YP_004892082.1| - 2e-23 82.5 0.2 1e-21 77.0 0.1 2.6 1 1 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.15 gi|352681559|ref|YP_004892083.1| - 9.8e-28 95.8 0.1 9.8e-28 95.8 0.1 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|352681559|ref|YP_004892083.1| - 6e-06 25.9 1.9 1.8e-05 24.4 0.1 2.1 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|352681559|ref|YP_004892083.1| - 0.0035 17.1 2.2 0.0035 17.1 1.5 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.16 gi|352681560|ref|YP_004892084.1| - 1.2e-50 171.3 0.0 1.7e-50 170.8 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|352681560|ref|YP_004892084.1| - 1.6e-24 85.8 2.9 3e-24 84.9 2.0 1.5 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain ADH_N PF08240.7 gi|352681561|ref|YP_004892085.1| - 1.2e-12 47.5 0.0 2.1e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|352681561|ref|YP_004892085.1| - 1.3e-07 31.2 0.1 2.8e-07 30.1 0.1 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|352681561|ref|YP_004892085.1| - 0.00065 19.8 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|352681561|ref|YP_004892085.1| - 0.0021 17.2 0.3 0.003 16.6 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|352681561|ref|YP_004892085.1| - 0.013 15.1 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Choline_kin_N PF04428.9 gi|352681561|ref|YP_004892085.1| - 0.052 13.0 0.0 0.13 11.7 0.0 1.7 1 0 0 1 1 1 0 Choline kinase N terminus Phosphoesterase PF04185.9 gi|352681562|ref|YP_004892086.1| - 7.9e-66 222.7 0.2 1.3e-65 222.0 0.1 1.3 1 1 0 1 1 1 1 Phosphoesterase family Creatininase PF02633.9 gi|352681563|ref|YP_004892087.1| - 5.1e-72 241.7 0.4 5.8e-72 241.6 0.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Pyr_redox_2 PF07992.9 gi|352681565|ref|YP_004892089.1| - 2.3e-27 96.1 10.7 6.6e-15 55.5 0.0 4.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|352681565|ref|YP_004892089.1| - 1.5e-26 92.5 0.0 2.8e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|352681565|ref|YP_004892089.1| - 2e-20 72.9 0.8 2e-20 72.9 0.5 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|352681565|ref|YP_004892089.1| - 2.1e-13 50.8 0.3 1.1e-10 41.8 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|352681565|ref|YP_004892089.1| - 5.8e-13 48.4 8.6 4.6e-08 32.3 0.0 3.2 2 1 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|352681565|ref|YP_004892089.1| - 5.8e-08 31.6 15.2 0.0036 15.8 0.3 4.2 3 1 2 5 5 5 3 HI0933-like protein DAO PF01266.19 gi|352681565|ref|YP_004892089.1| - 1.1e-06 27.8 25.2 0.00069 18.6 2.6 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|352681565|ref|YP_004892089.1| - 3.4e-06 26.1 15.8 0.00026 19.9 0.7 3.3 3 1 0 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|352681565|ref|YP_004892089.1| - 8.2e-06 25.0 0.6 0.013 14.5 0.0 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.1 gi|352681565|ref|YP_004892089.1| - 1.1e-05 25.5 1.0 0.0019 18.3 0.2 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|352681565|ref|YP_004892089.1| - 3.7e-05 22.9 14.9 0.00019 20.6 0.4 3.2 3 1 1 4 4 4 2 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|352681565|ref|YP_004892089.1| - 0.00018 20.5 0.7 0.087 11.7 0.0 2.4 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|352681565|ref|YP_004892089.1| - 0.00019 20.8 0.4 0.00019 20.8 0.3 1.8 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|352681565|ref|YP_004892089.1| - 0.00046 20.1 9.6 0.23 11.5 0.2 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|352681565|ref|YP_004892089.1| - 0.00082 19.0 1.0 0.00082 19.0 0.7 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|352681565|ref|YP_004892089.1| - 0.0016 17.6 6.3 0.28 10.1 0.4 2.4 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.16 gi|352681565|ref|YP_004892089.1| - 0.0042 16.6 0.2 0.0096 15.4 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|352681565|ref|YP_004892089.1| - 0.018 15.0 3.5 0.14 12.1 0.1 2.7 2 0 0 2 2 2 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|352681565|ref|YP_004892089.1| - 0.063 12.4 0.4 0.3 10.2 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|352681565|ref|YP_004892089.1| - 0.14 11.0 8.0 1.4 7.7 0.5 2.8 2 2 1 3 3 3 0 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|352681565|ref|YP_004892089.1| - 0.16 12.0 0.7 1.5 8.9 0.2 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.19 gi|352681565|ref|YP_004892089.1| - 0.34 9.9 2.4 14 4.5 0.0 3.0 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.9 gi|352681565|ref|YP_004892089.1| - 0.93 8.0 4.6 4.6 5.7 1.6 2.3 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.16 gi|352681565|ref|YP_004892089.1| - 7.7 6.3 8.8 3.4 7.5 0.4 2.5 2 0 0 2 2 2 0 ThiF family RAMP4 PF06624.7 gi|352681566|ref|YP_004892090.1| - 0.3 10.6 1.3 0.94 9.0 0.0 2.3 3 0 0 3 3 3 0 Ribosome associated membrane protein RAMP4 DUF2109 PF09882.4 gi|352681566|ref|YP_004892090.1| - 0.68 9.9 0.1 0.68 9.9 0.1 3.1 3 1 0 3 3 3 0 Predicted membrane protein (DUF2109) His_Phos_1 PF00300.17 gi|352681569|ref|YP_004892093.1| - 7.2e-13 48.9 0.1 1.2e-12 48.1 0.0 1.4 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) ACT PF01842.20 gi|352681569|ref|YP_004892093.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 ACT domain HSBP1 PF06825.7 gi|352681570|ref|YP_004892094.1| - 1.3e-08 34.3 21.8 0.023 14.2 2.1 5.6 1 1 4 5 5 5 3 Heat shock factor binding protein 1 MtrG PF04210.8 gi|352681570|ref|YP_004892094.1| - 4.4e-08 32.6 13.1 0.026 14.1 0.1 5.2 1 1 5 6 6 5 2 Tetrahydromethanopterin S-methyltransferase, subunit G AAA_13 PF13166.1 gi|352681570|ref|YP_004892094.1| - 6.7e-08 31.4 11.2 7.8e-08 31.2 7.7 1.0 1 0 0 1 1 1 1 AAA domain NPV_P10 PF05531.7 gi|352681570|ref|YP_004892094.1| - 1.1e-07 31.9 20.0 0.0001 22.4 1.9 3.7 2 1 1 3 3 2 2 Nucleopolyhedrovirus P10 protein HalX PF08663.5 gi|352681570|ref|YP_004892094.1| - 1.9e-07 30.9 17.7 0.096 12.6 0.3 5.9 1 1 4 5 5 5 1 HalX domain Baculo_PEP_C PF04513.7 gi|352681570|ref|YP_004892094.1| - 8.8e-07 28.8 14.2 0.0023 17.7 3.1 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1515 PF07439.6 gi|352681570|ref|YP_004892094.1| - 9.8e-07 28.5 17.7 0.00039 20.2 0.6 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF1515) Syntaxin PF00804.20 gi|352681570|ref|YP_004892094.1| - 3.4e-06 27.1 14.6 0.0024 17.9 2.7 2.5 1 1 1 2 2 2 2 Syntaxin Matrilin_ccoil PF10393.4 gi|352681570|ref|YP_004892094.1| - 4e-06 26.0 12.7 0.14 11.5 0.1 6.0 1 1 2 5 5 5 1 Trimeric coiled-coil oligomerisation domain of matrilin FliD_C PF07195.7 gi|352681570|ref|YP_004892094.1| - 1.3e-05 24.6 11.1 0.025 13.8 0.6 2.9 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus ApoLp-III PF07464.6 gi|352681570|ref|YP_004892094.1| - 1.5e-05 25.0 13.1 2.3e-05 24.4 7.0 2.5 2 1 0 2 2 1 1 Apolipophorin-III precursor (apoLp-III) Snapin_Pallidin PF14712.1 gi|352681570|ref|YP_004892094.1| - 2.9e-05 24.2 17.3 0.002 18.4 2.5 4.1 1 1 3 4 4 4 3 Snapin/Pallidin DUF1664 PF07889.7 gi|352681570|ref|YP_004892094.1| - 3.3e-05 23.6 17.5 0.0059 16.4 3.9 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|352681570|ref|YP_004892094.1| - 4e-05 23.4 15.7 0.0058 16.3 0.9 3.4 1 1 3 4 4 3 2 Laminin Domain II Apolipoprotein PF01442.13 gi|352681570|ref|YP_004892094.1| - 5.7e-05 22.7 13.4 0.00049 19.6 9.3 2.3 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain AKNA PF12443.3 gi|352681570|ref|YP_004892094.1| - 7.8e-05 22.6 8.3 0.48 10.4 0.1 4.5 1 1 4 5 5 5 1 AT-hook-containing transcription factor TMF_DNA_bd PF12329.3 gi|352681570|ref|YP_004892094.1| - 0.0001 22.0 17.8 1.2 9.0 2.9 4.6 2 1 2 4 4 4 0 TATA element modulatory factor 1 DNA binding DUF948 PF06103.6 gi|352681570|ref|YP_004892094.1| - 0.00011 21.9 11.6 0.022 14.5 1.9 3.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) MCPsignal PF00015.16 gi|352681570|ref|YP_004892094.1| - 0.00018 21.1 12.6 0.00041 19.9 8.6 1.6 1 1 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3584 PF12128.3 gi|352681570|ref|YP_004892094.1| - 0.00018 19.0 10.7 0.00022 18.7 7.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Phage_GPO PF05929.6 gi|352681570|ref|YP_004892094.1| - 0.0002 20.7 10.7 0.04 13.1 1.0 2.1 1 1 1 2 2 2 2 Phage capsid scaffolding protein (GPO) serine peptidase COG2 PF06148.6 gi|352681570|ref|YP_004892094.1| - 0.0002 21.2 12.8 0.014 15.2 1.7 2.6 1 1 1 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 AAA_27 PF13514.1 gi|352681570|ref|YP_004892094.1| - 0.00022 19.1 11.3 0.00031 18.6 7.8 1.2 1 0 0 1 1 1 1 AAA domain DUF3829 PF12889.2 gi|352681570|ref|YP_004892094.1| - 0.00024 20.3 3.9 0.0044 16.2 2.7 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3829) IncA PF04156.9 gi|352681570|ref|YP_004892094.1| - 0.00027 20.6 13.6 0.0026 17.3 4.2 2.3 1 1 1 2 2 2 1 IncA protein TPR_MLP1_2 PF07926.7 gi|352681570|ref|YP_004892094.1| - 0.00028 20.6 9.5 0.023 14.4 1.7 2.6 1 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein Prefoldin_2 PF01920.15 gi|352681570|ref|YP_004892094.1| - 0.0003 20.4 14.3 0.18 11.6 0.1 4.2 2 1 3 5 5 4 2 Prefoldin subunit DUF3552 PF12072.3 gi|352681570|ref|YP_004892094.1| - 0.0003 20.0 17.7 0.0012 18.0 4.7 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) DUF148 PF02520.12 gi|352681570|ref|YP_004892094.1| - 0.00033 20.4 9.8 0.026 14.3 3.3 2.6 1 1 1 2 2 2 1 Domain of unknown function DUF148 FH2 PF02181.18 gi|352681570|ref|YP_004892094.1| - 0.0004 19.3 6.2 0.0057 15.5 0.9 2.3 1 1 1 2 2 2 1 Formin Homology 2 Domain Atg14 PF10186.4 gi|352681570|ref|YP_004892094.1| - 0.00043 19.3 15.8 0.0037 16.2 11.0 2.0 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Nup54 PF13874.1 gi|352681570|ref|YP_004892094.1| - 0.00045 19.9 15.0 0.025 14.2 1.8 3.2 1 1 2 3 3 3 1 Nucleoporin complex subunit 54 Prefoldin_3 PF13758.1 gi|352681570|ref|YP_004892094.1| - 0.00045 19.9 19.4 0.11 12.3 2.7 4.3 1 1 3 4 4 4 1 Prefoldin subunit Transposase_22 PF02994.9 gi|352681570|ref|YP_004892094.1| - 0.00057 18.4 16.0 0.0046 15.5 9.8 2.0 1 1 1 2 2 2 2 L1 transposable element RmuC PF02646.11 gi|352681570|ref|YP_004892094.1| - 0.0008 18.3 9.9 0.027 13.2 0.8 2.7 1 1 3 4 4 4 3 RmuC family BLOC1_2 PF10046.4 gi|352681570|ref|YP_004892094.1| - 0.0008 19.5 11.6 0.032 14.3 5.2 2.9 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|352681570|ref|YP_004892094.1| - 0.00097 18.4 8.7 0.0066 15.6 5.5 2.0 1 1 1 2 2 2 2 Reovirus sigma C capsid protein PilJ PF13675.1 gi|352681570|ref|YP_004892094.1| - 0.001 19.3 4.6 0.036 14.3 0.5 2.3 1 1 1 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2937 PF11157.3 gi|352681570|ref|YP_004892094.1| - 0.0012 18.1 5.9 0.017 14.4 0.6 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2937) DUF2130 PF09903.4 gi|352681570|ref|YP_004892094.1| - 0.0015 17.3 9.6 0.036 12.8 2.1 2.3 1 1 1 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2130) Seryl_tRNA_N PF02403.17 gi|352681570|ref|YP_004892094.1| - 0.0015 18.4 19.6 0.039 13.9 3.6 2.4 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain DUF2959 PF11172.3 gi|352681570|ref|YP_004892094.1| - 0.0018 18.0 7.3 0.4 10.4 2.5 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2959) DUF1848 PF08902.6 gi|352681570|ref|YP_004892094.1| - 0.002 17.7 0.9 0.0025 17.3 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) MitMem_reg PF13012.1 gi|352681570|ref|YP_004892094.1| - 0.0022 18.0 3.5 0.1 12.6 2.4 2.7 1 1 0 1 1 1 1 Maintenance of mitochondrial structure and function MscS_porin PF12795.2 gi|352681570|ref|YP_004892094.1| - 0.0022 17.3 14.5 0.041 13.1 4.6 3.1 1 1 0 2 2 2 1 Mechanosensitive ion channel porin domain FlaC_arch PF05377.6 gi|352681570|ref|YP_004892094.1| - 0.0022 17.8 13.5 3.8 7.4 2.0 4.6 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.2 gi|352681570|ref|YP_004892094.1| - 0.0023 17.7 15.8 0.035 13.9 5.7 2.7 2 1 1 3 3 2 1 Tropomyosin like YlqD PF11068.3 gi|352681570|ref|YP_004892094.1| - 0.0024 17.9 9.4 0.2 11.7 1.2 2.3 1 1 1 2 2 2 2 YlqD protein Lipoprotein_7 PF01540.11 gi|352681570|ref|YP_004892094.1| - 0.0025 16.9 7.0 0.0033 16.5 4.9 1.3 1 0 0 1 1 1 1 Adhesin lipoprotein DUF4407 PF14362.1 gi|352681570|ref|YP_004892094.1| - 0.0026 16.7 11.3 0.014 14.3 7.8 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4407) DUF4631 PF15450.1 gi|352681570|ref|YP_004892094.1| - 0.0031 15.8 14.5 0.004 15.5 6.5 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4631) ZapA PF05164.8 gi|352681570|ref|YP_004892094.1| - 0.0032 17.4 11.9 4.5 7.3 8.2 3.3 1 1 0 1 1 1 0 Cell division protein ZapA GAS PF13851.1 gi|352681570|ref|YP_004892094.1| - 0.0039 16.4 10.6 0.013 14.7 7.3 1.8 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Lebercilin PF15619.1 gi|352681570|ref|YP_004892094.1| - 0.0044 16.4 14.8 0.032 13.6 1.4 3.2 1 1 2 3 3 3 1 Ciliary protein causing Leber congenital amaurosis disease DinI PF06183.8 gi|352681570|ref|YP_004892094.1| - 0.0064 16.4 3.7 8.4 6.4 0.0 3.9 3 1 0 3 3 3 0 DinI-like family Spectrin PF00435.16 gi|352681570|ref|YP_004892094.1| - 0.0066 16.7 8.4 0.068 13.4 2.1 2.6 1 1 2 3 3 3 1 Spectrin repeat FliJ PF02050.11 gi|352681570|ref|YP_004892094.1| - 0.0072 16.3 4.2 0.075 13.0 0.6 2.5 1 1 1 2 2 2 1 Flagellar FliJ protein DUF2884 PF11101.3 gi|352681570|ref|YP_004892094.1| - 0.0072 15.7 6.8 0.041 13.2 3.6 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2884) AIP3 PF03915.8 gi|352681570|ref|YP_004892094.1| - 0.0077 15.1 11.9 0.016 14.1 8.1 1.5 1 1 0 1 1 1 1 Actin interacting protein 3 Bacillus_HBL PF05791.6 gi|352681570|ref|YP_004892094.1| - 0.008 15.5 10.7 0.036 13.4 1.7 2.2 1 1 0 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) NYD-SP28 PF14772.1 gi|352681570|ref|YP_004892094.1| - 0.0085 16.1 9.5 0.36 10.9 3.4 2.5 1 1 0 1 1 1 1 Sperm tail Mt_ATP-synt_D PF05873.7 gi|352681570|ref|YP_004892094.1| - 0.0086 15.7 4.3 1.7 8.2 0.6 2.7 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Vip3A_N PF12495.3 gi|352681570|ref|YP_004892094.1| - 0.0087 15.7 4.5 0.054 13.1 2.5 2.1 1 1 1 2 2 2 1 Vegetative insecticide protein 3A N terminal Uds1 PF15456.1 gi|352681570|ref|YP_004892094.1| - 0.0092 15.9 14.4 21 5.1 10.0 3.3 1 1 0 1 1 1 0 Up-regulated During Septation Allexi_40kDa PF05549.6 gi|352681570|ref|YP_004892094.1| - 0.0093 15.2 8.7 0.038 13.2 0.9 2.1 1 1 1 2 2 2 1 Allexivirus 40kDa protein Transcrip_act PF04949.8 gi|352681570|ref|YP_004892094.1| - 0.0094 15.5 16.0 0.15 11.7 3.9 2.8 1 1 2 3 3 3 2 Transcriptional activator Hemagglutinin PF00509.13 gi|352681570|ref|YP_004892094.1| - 0.0098 14.0 12.6 0.15 10.1 2.2 2.2 1 1 1 2 2 2 2 Haemagglutinin DUF16 PF01519.11 gi|352681570|ref|YP_004892094.1| - 0.01 16.0 9.7 0.064 13.4 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF16 CAP_N PF01213.14 gi|352681570|ref|YP_004892094.1| - 0.01 15.1 4.4 0.024 13.9 3.0 1.6 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal UvrB PF12344.3 gi|352681570|ref|YP_004892094.1| - 0.011 15.2 11.2 2.7 7.5 0.1 5.1 5 0 0 5 5 5 0 Ultra-violet resistance protein B TBPIP PF07106.8 gi|352681570|ref|YP_004892094.1| - 0.011 15.3 5.2 0.011 15.3 3.6 2.6 2 1 1 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin PF02996.12 gi|352681570|ref|YP_004892094.1| - 0.011 15.3 16.5 0.23 11.1 0.6 4.1 1 1 3 4 4 4 0 Prefoldin subunit DUF4613 PF15390.1 gi|352681570|ref|YP_004892094.1| - 0.012 13.8 2.4 0.014 13.5 1.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) WEMBL PF05701.6 gi|352681570|ref|YP_004892094.1| - 0.012 14.1 14.0 0.12 10.7 0.4 2.7 1 1 1 2 2 2 0 Weak chloroplast movement under blue light MRF_C1 PF13887.1 gi|352681570|ref|YP_004892094.1| - 0.013 14.5 16.7 17 4.4 0.1 7.6 5 3 2 7 7 6 0 Myelin gene regulatory factor -C-terminal domain 1 Cortex-I_coil PF09304.5 gi|352681570|ref|YP_004892094.1| - 0.013 15.5 18.1 0.13 12.3 3.7 3.6 1 1 2 3 3 3 0 Cortexillin I, coiled coil DUF4618 PF15397.1 gi|352681570|ref|YP_004892094.1| - 0.013 14.8 10.6 0.092 12.0 3.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Prominin PF05478.6 gi|352681570|ref|YP_004892094.1| - 0.014 12.9 8.1 0.037 11.5 5.0 1.5 1 1 0 1 1 1 0 Prominin DUF4455 PF14643.1 gi|352681570|ref|YP_004892094.1| - 0.014 14.0 10.8 0.18 10.3 1.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) MbeD_MobD PF04899.7 gi|352681570|ref|YP_004892094.1| - 0.014 15.2 5.5 3.4 7.6 0.4 4.0 1 1 1 3 3 3 0 MbeD/MobD like Hemerythrin PF01814.18 gi|352681570|ref|YP_004892094.1| - 0.015 15.4 5.0 0.75 9.9 0.4 3.0 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain HAUS-augmin3 PF14932.1 gi|352681570|ref|YP_004892094.1| - 0.016 14.4 10.0 0.019 14.1 4.4 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 OmpH PF03938.9 gi|352681570|ref|YP_004892094.1| - 0.017 15.0 7.8 1.1 9.1 5.4 2.5 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Mnd1 PF03962.10 gi|352681570|ref|YP_004892094.1| - 0.018 14.7 12.1 2.4 7.8 7.9 2.9 1 1 1 2 2 2 0 Mnd1 family KMP11 PF03037.11 gi|352681570|ref|YP_004892094.1| - 0.018 15.6 0.9 4.8 7.8 0.1 2.6 1 1 2 3 3 3 0 Kinetoplastid membrane protein 11 Sipho_Gp157 PF05565.6 gi|352681570|ref|YP_004892094.1| - 0.018 14.6 13.5 0.071 12.6 4.2 2.3 1 1 1 2 2 2 0 Siphovirus Gp157 Syntaxin-6_N PF09177.6 gi|352681570|ref|YP_004892094.1| - 0.019 15.3 14.1 1.2 9.5 1.6 3.0 1 1 0 2 2 2 0 Syntaxin 6, N-terminal Corona_S2 PF01601.11 gi|352681570|ref|YP_004892094.1| - 0.019 13.0 5.4 0.42 8.6 0.8 2.1 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein TMP_2 PF06791.8 gi|352681570|ref|YP_004892094.1| - 0.019 14.5 4.1 0.38 10.3 1.9 2.5 1 1 1 2 2 2 0 Prophage tail length tape measure protein FemAB PF02388.11 gi|352681570|ref|YP_004892094.1| - 0.02 13.6 7.8 0.069 11.8 0.7 2.1 1 1 1 2 2 2 0 FemAB family Filament PF00038.16 gi|352681570|ref|YP_004892094.1| - 0.02 14.4 12.9 0.16 11.3 5.3 2.2 1 1 1 2 2 2 0 Intermediate filament protein DUF2397 PF09660.5 gi|352681570|ref|YP_004892094.1| - 0.02 13.5 6.7 0.026 13.1 4.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2397) DUF4351 PF14261.1 gi|352681570|ref|YP_004892094.1| - 0.021 14.7 4.2 18 5.2 0.1 4.1 2 2 2 4 4 3 0 Domain of unknown function (DUF4351) Phasin PF05597.6 gi|352681570|ref|YP_004892094.1| - 0.022 14.5 14.2 0.17 11.6 2.7 3.7 1 1 3 4 4 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) GCN5L1 PF06320.8 gi|352681570|ref|YP_004892094.1| - 0.024 14.4 7.5 1.8 8.3 0.5 3.2 1 1 2 3 3 3 0 GCN5-like protein 1 (GCN5L1) SF-assemblin PF06705.6 gi|352681570|ref|YP_004892094.1| - 0.024 13.7 17.2 0.046 12.8 11.3 1.8 1 1 0 1 1 1 0 SF-assemblin/beta giardin bZIP_1 PF00170.16 gi|352681570|ref|YP_004892094.1| - 0.025 14.5 7.2 1.5 8.7 0.4 4.0 1 1 2 3 3 3 0 bZIP transcription factor DUF3450 PF11932.3 gi|352681570|ref|YP_004892094.1| - 0.025 13.8 12.5 0.18 11.0 2.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) TMPIT PF07851.8 gi|352681570|ref|YP_004892094.1| - 0.027 13.5 8.5 0.21 10.6 1.6 2.0 1 1 1 2 2 2 0 TMPIT-like protein Mer2 PF09074.5 gi|352681570|ref|YP_004892094.1| - 0.028 14.3 10.6 0.038 13.9 6.8 1.6 1 1 1 2 2 1 0 Mer2 HrpB7 PF09486.5 gi|352681570|ref|YP_004892094.1| - 0.029 14.3 15.3 0.46 10.3 3.5 3.2 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) Syntaxin_2 PF14523.1 gi|352681570|ref|YP_004892094.1| - 0.029 14.3 12.7 0.28 11.2 2.0 2.5 1 1 1 2 2 2 0 Syntaxin-like protein DUF2802 PF10975.3 gi|352681570|ref|YP_004892094.1| - 0.03 14.0 5.3 7.9 6.3 0.1 4.2 2 1 3 5 5 3 0 Protein of unknown function (DUF2802) MxiH PF09392.5 gi|352681570|ref|YP_004892094.1| - 0.03 14.8 1.2 0.89 10.1 0.9 2.8 1 1 0 1 1 1 0 Type III secretion needle MxiH like MtrB PF05440.7 gi|352681570|ref|YP_004892094.1| - 0.031 14.3 6.6 4.2 7.4 0.0 4.2 1 1 4 5 5 4 0 Tetrahydromethanopterin S-methyltransferase subunit B HR1 PF02185.11 gi|352681570|ref|YP_004892094.1| - 0.031 14.0 9.6 2 8.1 0.4 3.6 2 2 1 3 3 3 0 Hr1 repeat DUF4446 PF14584.1 gi|352681570|ref|YP_004892094.1| - 0.031 14.1 10.3 1.2 8.9 0.9 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) TMCO5 PF14992.1 gi|352681570|ref|YP_004892094.1| - 0.033 13.3 12.7 0.44 9.6 3.6 2.1 1 1 1 2 2 2 0 TMCO5 family Ax_dynein_light PF10211.4 gi|352681570|ref|YP_004892094.1| - 0.036 13.9 12.4 0.79 9.5 2.9 2.9 1 1 1 2 2 2 0 Axonemal dynein light chain DNA_repr_REX1B PF14966.1 gi|352681570|ref|YP_004892094.1| - 0.036 14.4 3.7 12 6.3 1.4 3.3 1 1 1 2 2 2 0 DNA repair REX1-B Fib_alpha PF08702.5 gi|352681570|ref|YP_004892094.1| - 0.038 14.0 13.0 3.1 7.9 8.8 2.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF2730 PF10805.3 gi|352681570|ref|YP_004892094.1| - 0.039 13.7 11.2 3.1 7.5 0.5 4.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) DASH_Dad2 PF08654.5 gi|352681570|ref|YP_004892094.1| - 0.039 13.9 4.6 2.4 8.2 0.2 3.2 1 1 3 4 4 4 0 DASH complex subunit Dad2 DUF972 PF06156.8 gi|352681570|ref|YP_004892094.1| - 0.041 14.2 12.8 0.21 11.9 1.4 3.0 2 1 2 4 4 3 0 Protein of unknown function (DUF972) Flagellin_C PF00700.16 gi|352681570|ref|YP_004892094.1| - 0.042 14.0 10.1 4.9 7.3 0.7 3.7 1 1 2 3 3 3 0 Bacterial flagellin C-terminal helical region FlxA PF14282.1 gi|352681570|ref|YP_004892094.1| - 0.042 13.7 9.8 1.2 9.1 1.6 2.8 1 1 2 3 3 3 0 FlxA-like protein Acyl-CoA_dh_2 PF08028.6 gi|352681570|ref|YP_004892094.1| - 0.045 14.0 1.3 0.045 14.0 0.9 2.6 1 1 2 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain HSCB_C PF07743.8 gi|352681570|ref|YP_004892094.1| - 0.046 14.1 13.4 7.1e+03 -2.5 9.3 4.3 1 1 0 1 1 0 0 HSCB C-terminal oligomerisation domain DUF4200 PF13863.1 gi|352681570|ref|YP_004892094.1| - 0.046 13.6 13.9 23 4.9 9.3 3.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) DivIC PF04977.10 gi|352681570|ref|YP_004892094.1| - 0.048 13.1 16.6 1.2 8.6 0.4 4.6 1 1 1 2 2 1 0 Septum formation initiator Fzo_mitofusin PF04799.8 gi|352681570|ref|YP_004892094.1| - 0.049 13.0 10.9 2.5 7.4 2.6 3.1 1 1 2 3 3 3 0 fzo-like conserved region DUF1843 PF08898.5 gi|352681570|ref|YP_004892094.1| - 0.051 13.6 0.1 0.051 13.6 0.1 2.7 3 0 0 3 3 1 0 Domain of unknown function (DUF1843) SEO_N PF14576.1 gi|352681570|ref|YP_004892094.1| - 0.053 12.7 3.2 3.9 6.6 0.2 2.6 1 1 2 3 3 3 0 Sieve element occlusion N-terminus SlyX PF04102.7 gi|352681570|ref|YP_004892094.1| - 0.056 13.8 16.1 0.41 11.0 0.3 4.2 2 1 2 4 4 3 0 SlyX CDC37_N PF03234.9 gi|352681570|ref|YP_004892094.1| - 0.056 13.7 10.4 0.055 13.7 6.2 1.8 1 1 1 2 2 2 0 Cdc37 N terminal kinase binding YjcZ PF13990.1 gi|352681570|ref|YP_004892094.1| - 0.056 12.5 5.5 0.9 8.6 0.3 2.2 1 1 1 2 2 2 0 YjcZ-like protein APG6 PF04111.7 gi|352681570|ref|YP_004892094.1| - 0.058 12.4 10.0 0.056 12.4 5.5 1.8 1 1 1 2 2 2 0 Autophagy protein Apg6 TrbM PF07424.6 gi|352681570|ref|YP_004892094.1| - 0.058 13.3 3.8 0.26 11.2 0.3 2.4 1 1 2 3 3 3 0 TrbM WXG100 PF06013.7 gi|352681570|ref|YP_004892094.1| - 0.059 13.3 6.7 5.5 7.0 0.4 3.8 2 1 1 3 3 2 0 Proteins of 100 residues with WXG DUF1640 PF07798.6 gi|352681570|ref|YP_004892094.1| - 0.066 13.2 15.1 3.7 7.5 6.9 4.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) IFT57 PF10498.4 gi|352681570|ref|YP_004892094.1| - 0.071 11.8 9.9 0.56 8.9 1.7 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DivIVA PF05103.8 gi|352681570|ref|YP_004892094.1| - 0.074 13.0 12.6 1.6 8.7 3.1 3.2 1 1 2 3 3 3 0 DivIVA protein Peptidase_C6 PF00851.13 gi|352681570|ref|YP_004892094.1| - 0.079 11.5 3.2 0.098 11.2 2.2 1.2 1 0 0 1 1 1 0 Helper component proteinase Suppressor_APC PF11414.3 gi|352681570|ref|YP_004892094.1| - 0.079 12.7 3.5 11 5.9 0.1 3.2 1 1 2 3 3 3 0 Adenomatous polyposis coli tumour suppressor protein DUF2450 PF10475.4 gi|352681570|ref|YP_004892094.1| - 0.081 11.8 9.5 0.22 10.4 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) Peripla_BP_2 PF01497.13 gi|352681570|ref|YP_004892094.1| - 0.085 11.9 11.5 2.5 7.1 1.0 3.6 1 1 2 3 3 3 0 Periplasmic binding protein Spc7 PF08317.6 gi|352681570|ref|YP_004892094.1| - 0.089 11.4 15.9 0.35 9.4 4.8 2.2 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF2317 PF10079.4 gi|352681570|ref|YP_004892094.1| - 0.09 11.3 10.1 0.11 11.0 1.7 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) Sec3_C PF09763.4 gi|352681570|ref|YP_004892094.1| - 0.093 10.8 7.3 0.78 7.7 1.5 2.1 1 1 1 2 2 2 0 Exocyst complex component Sec3 Muted PF14942.1 gi|352681570|ref|YP_004892094.1| - 0.099 12.5 9.9 0.22 11.4 6.3 1.9 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein V_ATPase_I PF01496.14 gi|352681570|ref|YP_004892094.1| - 0.099 10.4 9.9 1.3 6.8 6.7 2.0 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family APG17 PF04108.7 gi|352681570|ref|YP_004892094.1| - 0.1 11.3 10.1 0.25 10.0 3.7 2.4 1 1 1 2 2 2 0 Autophagy protein Apg17 Sec5 PF15469.1 gi|352681570|ref|YP_004892094.1| - 0.11 12.2 10.2 1.2 8.7 1.5 3.0 1 1 2 3 3 3 0 Exocyst complex component Sec5 ACCA PF03255.9 gi|352681570|ref|YP_004892094.1| - 0.11 12.0 11.0 1.9 7.9 0.5 3.1 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GldM_N PF12081.3 gi|352681570|ref|YP_004892094.1| - 0.11 12.0 6.0 0.36 10.3 2.2 2.2 1 1 1 2 2 2 0 GldM N-terminal domain DUF3496 PF12001.3 gi|352681570|ref|YP_004892094.1| - 0.11 12.7 7.9 16 5.7 0.1 3.8 1 1 1 3 3 3 0 Domain of unknown function (DUF3496) HAUS5 PF14817.1 gi|352681570|ref|YP_004892094.1| - 0.11 10.9 14.6 0.011 14.3 4.4 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 PMC2NT PF08066.7 gi|352681570|ref|YP_004892094.1| - 0.13 12.6 8.4 1.8 8.8 0.8 3.2 1 1 2 3 3 3 0 PMC2NT (NUC016) domain DUF3090 PF11290.3 gi|352681570|ref|YP_004892094.1| - 0.14 11.6 4.8 0.2 11.1 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) Sulfatase_C PF14707.1 gi|352681570|ref|YP_004892094.1| - 0.17 12.2 1.2 9 6.6 0.1 2.7 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase Effector_1 PF04518.7 gi|352681570|ref|YP_004892094.1| - 0.17 10.8 6.2 0.42 9.5 3.5 1.8 1 1 1 2 2 2 0 Effector from type III secretion system Phage_GP20 PF06810.6 gi|352681570|ref|YP_004892094.1| - 0.17 11.3 11.6 8.4 5.8 6.4 3.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF1104 PF06518.6 gi|352681570|ref|YP_004892094.1| - 0.18 11.9 7.6 2.6 8.2 4.6 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1104) Occludin_ELL PF07303.8 gi|352681570|ref|YP_004892094.1| - 0.19 12.4 11.6 29 5.4 0.1 4.3 2 1 3 5 5 4 0 Occludin homology domain DUF3826 PF12875.2 gi|352681570|ref|YP_004892094.1| - 0.2 11.3 9.7 0.29 10.8 6.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3826) HAP1_N PF04849.8 gi|352681570|ref|YP_004892094.1| - 0.2 10.5 14.1 0.43 9.4 2.3 2.3 1 1 0 2 2 2 0 HAP1 N-terminal conserved region DUF1110 PF06533.7 gi|352681570|ref|YP_004892094.1| - 0.2 11.4 7.5 0.85 9.4 0.6 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1110) KH_5 PF13184.1 gi|352681570|ref|YP_004892094.1| - 0.2 11.4 12.1 1.4 8.8 0.3 4.1 2 1 2 4 4 3 0 NusA-like KH domain DASH_Duo1 PF08651.5 gi|352681570|ref|YP_004892094.1| - 0.2 11.2 8.6 0.53 9.8 0.8 3.6 1 1 2 3 3 3 0 DASH complex subunit Duo1 Mst1_SARAH PF11629.3 gi|352681570|ref|YP_004892094.1| - 0.2 11.4 7.9 3.3 7.6 0.3 4.1 1 1 2 4 4 2 0 C terminal SARAH domain of Mst1 DUF1484 PF07363.6 gi|352681570|ref|YP_004892094.1| - 0.2 12.0 7.8 4.7 7.5 0.8 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1484) LXG PF04740.7 gi|352681570|ref|YP_004892094.1| - 0.2 11.3 12.6 0.57 9.9 4.0 2.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily T2SF PF00482.18 gi|352681570|ref|YP_004892094.1| - 0.21 11.5 3.4 0.79 9.6 0.3 2.5 1 1 0 2 2 2 0 Type II secretion system (T2SS), protein F HWE_HK PF07536.9 gi|352681570|ref|YP_004892094.1| - 0.22 12.0 9.2 16 6.0 0.6 3.6 1 1 3 4 4 3 0 HWE histidine kinase IFT46_B_C PF12317.3 gi|352681570|ref|YP_004892094.1| - 0.22 10.8 2.2 0.31 10.3 1.5 1.3 1 0 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal NTR2 PF15458.1 gi|352681570|ref|YP_004892094.1| - 0.23 10.6 11.5 0.84 8.8 0.3 3.2 2 1 1 3 3 3 0 Nineteen complex-related protein 2 DUF1192 PF06698.6 gi|352681570|ref|YP_004892094.1| - 0.23 11.2 13.2 0.17 11.7 0.6 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1192) CorA PF01544.13 gi|352681570|ref|YP_004892094.1| - 0.23 10.4 16.4 0.82 8.6 0.8 2.9 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein KxDL PF10241.4 gi|352681570|ref|YP_004892094.1| - 0.24 11.3 9.3 0.75 9.7 1.2 3.1 1 1 2 3 3 2 0 Uncharacterized conserved protein DUF3508 PF12018.3 gi|352681570|ref|YP_004892094.1| - 0.26 10.2 4.2 0.4 9.6 1.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3508) Fibritin_C PF07921.7 gi|352681570|ref|YP_004892094.1| - 0.26 11.2 3.4 5.6 6.9 2.5 2.7 1 1 1 2 2 1 0 Fibritin C-terminal region ISG65-75 PF11727.3 gi|352681570|ref|YP_004892094.1| - 0.27 10.2 9.7 0.55 9.2 6.4 1.7 1 1 0 1 1 1 0 Invariant surface glycoprotein DUF2479 PF10651.4 gi|352681570|ref|YP_004892094.1| - 0.3 10.6 8.5 3 7.3 0.2 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF2479) ING PF12998.2 gi|352681570|ref|YP_004892094.1| - 0.3 11.3 11.0 0.88 9.8 1.6 2.4 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding BCAS2 PF05700.6 gi|352681570|ref|YP_004892094.1| - 0.32 10.4 7.4 1.3 8.4 0.6 2.8 1 1 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Lectin_N PF03954.9 gi|352681570|ref|YP_004892094.1| - 0.32 10.3 5.6 2.6 7.4 0.5 2.3 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain FimP PF09766.4 gi|352681570|ref|YP_004892094.1| - 0.33 9.9 5.2 3.3 6.6 3.6 2.1 1 1 0 1 1 1 0 Fms-interacting protein DUF4140 PF13600.1 gi|352681570|ref|YP_004892094.1| - 0.33 11.4 16.4 8.4 6.9 0.8 3.9 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) Peptidase_M3 PF01432.15 gi|352681570|ref|YP_004892094.1| - 0.35 9.8 2.5 0.48 9.3 0.5 1.8 1 1 1 2 2 2 0 Peptidase family M3 DUF1020 PF06255.8 gi|352681570|ref|YP_004892094.1| - 0.36 9.9 5.2 1.4 8.0 0.9 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1020) GP41 PF00517.12 gi|352681570|ref|YP_004892094.1| - 0.37 10.3 6.4 11 5.5 0.1 3.2 1 1 3 4 4 4 0 Retroviral envelope protein TACC PF05010.9 gi|352681570|ref|YP_004892094.1| - 0.37 10.5 10.5 4.2 7.0 2.3 2.6 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC) FUSC PF04632.7 gi|352681570|ref|YP_004892094.1| - 0.38 9.1 6.2 1.5 7.1 4.3 1.7 1 1 0 1 1 1 0 Fusaric acid resistance protein family Sec2p PF06428.6 gi|352681570|ref|YP_004892094.1| - 0.42 10.5 10.0 0.73 9.7 2.9 2.6 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p Flu_NS2 PF00601.14 gi|352681570|ref|YP_004892094.1| - 0.43 10.8 7.5 0.35 11.0 0.5 2.6 2 1 1 3 3 2 0 Influenza non-structural protein (NS2) XhlA PF10779.4 gi|352681570|ref|YP_004892094.1| - 0.47 10.4 21.7 2.6 8.0 0.9 3.5 1 1 2 3 3 3 0 Haemolysin XhlA STAT_alpha PF01017.15 gi|352681570|ref|YP_004892094.1| - 0.5 10.0 7.2 12 5.5 5.0 2.4 1 1 0 1 1 1 0 STAT protein, all-alpha domain LTXXQ PF07813.7 gi|352681570|ref|YP_004892094.1| - 0.54 10.7 5.4 7.1 7.1 0.4 2.9 1 1 1 2 2 2 0 LTXXQ motif family protein ERM PF00769.14 gi|352681570|ref|YP_004892094.1| - 0.55 9.7 12.3 7.2 6.0 1.0 2.9 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF1732 PF08340.6 gi|352681570|ref|YP_004892094.1| - 0.58 10.0 10.2 1.3 8.9 0.4 2.9 2 1 0 3 3 2 0 Domain of unknown function (DUF1732) HALZ PF02183.13 gi|352681570|ref|YP_004892094.1| - 0.59 9.9 3.2 1 9.1 0.1 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper AATF-Che1 PF13339.1 gi|352681570|ref|YP_004892094.1| - 0.59 10.2 9.5 45 4.2 6.6 2.3 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Kinetocho_Slk19 PF12709.2 gi|352681570|ref|YP_004892094.1| - 0.59 10.2 8.2 15 5.7 0.2 3.9 1 1 2 3 3 3 0 Central kinetochore-associated Ribosomal_S30AE PF02482.14 gi|352681570|ref|YP_004892094.1| - 0.68 10.4 10.7 1.4 9.4 3.8 3.0 2 1 2 4 4 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Peptidase_M75 PF09375.5 gi|352681570|ref|YP_004892094.1| - 0.77 9.0 8.6 1.1 8.4 0.7 2.4 1 1 1 2 2 2 0 Imelysin Phage_Mu_Gam PF07352.7 gi|352681570|ref|YP_004892094.1| - 0.79 9.2 9.8 8.9 5.8 1.1 3.0 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein DUF1319 PF07028.6 gi|352681570|ref|YP_004892094.1| - 0.87 9.7 12.1 4.1 7.5 2.1 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) Snf7 PF03357.16 gi|352681570|ref|YP_004892094.1| - 0.97 8.7 15.7 1.1 8.6 5.5 2.9 1 1 1 2 2 2 0 Snf7 BMFP PF04380.8 gi|352681570|ref|YP_004892094.1| - 0.99 9.5 15.0 2.8 8.1 1.1 3.7 4 1 0 4 4 3 0 Membrane fusogenic activity WASH_WAHD PF11945.3 gi|352681570|ref|YP_004892094.1| - 1.1 8.5 14.4 1.4 8.1 4.3 2.2 1 1 1 2 2 2 0 WAHD domain of WASH complex SATase_N PF06426.9 gi|352681570|ref|YP_004892094.1| - 1.1 9.5 3.9 6.2 7.1 2.7 2.1 1 1 0 1 1 1 0 Serine acetyltransferase, N-terminal CENP-Q PF13094.1 gi|352681570|ref|YP_004892094.1| - 1.3 9.0 8.8 2.5 8.0 6.1 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF349 PF03993.7 gi|352681570|ref|YP_004892094.1| - 1.4 9.1 6.2 1.9 8.6 0.8 2.8 2 1 0 2 2 2 0 Domain of Unknown Function (DUF349) Nup88 PF10168.4 gi|352681570|ref|YP_004892094.1| - 1.5 6.5 9.5 1.9 6.2 6.6 1.2 1 0 0 1 1 1 0 Nuclear pore component MutS_IV PF05190.13 gi|352681570|ref|YP_004892094.1| - 1.6 8.9 10.7 26 5.0 0.3 4.2 1 1 1 3 3 3 0 MutS family domain IV GLE1 PF07817.8 gi|352681570|ref|YP_004892094.1| - 1.6 7.6 6.2 2.5 6.9 0.9 2.1 1 1 1 2 2 2 0 GLE1-like protein DUF2203 PF09969.4 gi|352681570|ref|YP_004892094.1| - 1.6 8.9 9.3 2e+02 2.1 6.4 2.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) HAUS6_N PF14661.1 gi|352681570|ref|YP_004892094.1| - 1.8 7.8 8.7 5 6.3 0.9 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus Acyl-CoA_dh_C PF12806.2 gi|352681570|ref|YP_004892094.1| - 1.9 8.3 5.0 30 4.4 0.1 3.3 2 1 1 3 3 2 0 Acetyl-CoA dehydrogenase C-terminal like CR6_interact PF10147.4 gi|352681570|ref|YP_004892094.1| - 2 7.6 10.3 6.3 6.0 3.8 2.1 1 1 1 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Filo_VP35 PF02097.10 gi|352681570|ref|YP_004892094.1| - 2 7.5 9.2 4.6 6.3 0.5 2.0 1 1 1 2 2 2 0 Filoviridae VP35 PRKCSH-like PF12999.2 gi|352681570|ref|YP_004892094.1| - 2.3 7.7 8.0 1.6 8.2 1.0 2.2 1 1 1 2 2 2 0 Glucosidase II beta subunit-like MRFAP1 PF15155.1 gi|352681570|ref|YP_004892094.1| - 2.3 8.5 11.4 0.25 11.6 1.8 2.6 1 1 1 2 2 2 0 MORF4 family-associated protein1 Enkurin PF13864.1 gi|352681570|ref|YP_004892094.1| - 2.4 8.3 6.6 14 5.9 3.2 2.5 1 1 1 2 2 2 0 Calmodulin-binding FlgN PF05130.7 gi|352681570|ref|YP_004892094.1| - 2.5 8.3 15.0 1.8e+02 2.3 9.4 2.7 1 1 1 2 2 1 0 FlgN protein DUF711 PF05167.7 gi|352681570|ref|YP_004892094.1| - 2.7 6.5 9.2 1.1 7.8 4.0 1.8 1 1 1 2 2 2 0 Uncharacterised ACR (DUF711) Microtub_assoc PF07989.6 gi|352681570|ref|YP_004892094.1| - 3 7.7 9.8 0.86 9.4 1.0 3.1 1 1 2 3 3 3 0 Microtubule associated UPF0449 PF15136.1 gi|352681570|ref|YP_004892094.1| - 3 8.0 8.2 13 6.0 0.2 3.6 1 1 3 4 4 4 0 Uncharacterised protein family UPF0449 ECM11 PF15463.1 gi|352681570|ref|YP_004892094.1| - 3.1 8.0 13.0 1.5 9.1 3.6 2.6 1 1 1 2 2 2 0 Extracellular mutant protein 11 Tht1 PF04163.7 gi|352681570|ref|YP_004892094.1| - 3.1 6.0 6.8 4.4 5.5 4.7 1.2 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein UPF0184 PF03670.8 gi|352681570|ref|YP_004892094.1| - 3.2 7.9 11.9 3.1e+02 1.6 0.2 4.0 1 1 1 2 2 1 0 Uncharacterised protein family (UPF0184) DUF4337 PF14235.1 gi|352681570|ref|YP_004892094.1| - 3.3 7.5 7.1 12 5.7 0.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Ead_Ea22 PF13935.1 gi|352681570|ref|YP_004892094.1| - 3.4 7.9 12.7 7.6e+02 0.3 8.8 2.6 1 1 0 1 1 0 0 Ead/Ea22-like protein H-kinase_dim PF02895.9 gi|352681570|ref|YP_004892094.1| - 3.7 7.9 10.7 2.2e+03 -1.0 7.4 3.5 1 1 0 1 1 0 0 Signal transducing histidine kinase, homodimeric domain zf-ZPR1 PF03367.8 gi|352681570|ref|YP_004892094.1| - 3.8 6.6 6.3 17 4.5 0.5 2.7 1 1 1 2 2 2 0 ZPR1 zinc-finger domain Med4 PF10018.4 gi|352681570|ref|YP_004892094.1| - 3.9 6.8 14.8 23 4.3 2.3 3.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Orthopox_A5L PF06193.6 gi|352681570|ref|YP_004892094.1| - 4 7.3 16.1 2.9 7.8 0.8 3.3 1 1 1 3 3 2 0 Orthopoxvirus A5L protein-like PspB PF06667.7 gi|352681570|ref|YP_004892094.1| - 4.2 7.3 16.2 4.8 7.1 1.0 4.2 1 1 3 4 4 4 0 Phage shock protein B Tho2 PF11262.3 gi|352681570|ref|YP_004892094.1| - 4.9 6.1 8.5 33 3.4 1.8 2.4 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DUF1479 PF07350.7 gi|352681570|ref|YP_004892094.1| - 4.9 5.5 7.6 11 4.3 0.7 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1479) BBP1_C PF15272.1 gi|352681570|ref|YP_004892094.1| - 5.2 6.5 13.4 7.1 6.1 2.5 2.3 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal DUF2175 PF09943.4 gi|352681570|ref|YP_004892094.1| - 5.8 7.0 10.1 25 5.0 0.3 3.1 1 1 3 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2175) PEP-utilisers_N PF05524.8 gi|352681570|ref|YP_004892094.1| - 6 6.6 13.9 2.2e+02 1.6 0.0 3.5 1 1 1 2 2 1 0 PEP-utilising enzyme, N-terminal DUF4226 PF10774.4 gi|352681570|ref|YP_004892094.1| - 6.9 6.7 9.8 6.6 6.8 1.5 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4226) DUF883 PF05957.8 gi|352681570|ref|YP_004892094.1| - 8.2 6.8 13.4 5.3 7.5 2.5 3.1 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF883) Lge1 PF11488.3 gi|352681570|ref|YP_004892094.1| - 9.8 6.4 10.9 1.5e+03 -0.6 7.6 3.2 1 1 0 1 1 0 0 Transcriptional regulatory protein LGE1 Methyltransf_26 PF13659.1 gi|352681571|ref|YP_004892095.1| - 2.9e-16 59.5 0.7 2.9e-16 59.5 0.5 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|352681571|ref|YP_004892095.1| - 1.3e-15 57.2 0.0 1.8e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|352681571|ref|YP_004892095.1| - 2.7e-12 46.4 0.6 6.5e-12 45.1 0.4 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|352681571|ref|YP_004892095.1| - 2.3e-10 41.0 0.0 4.1e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352681571|ref|YP_004892095.1| - 2.3e-08 33.7 0.0 3.3e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352681571|ref|YP_004892095.1| - 5.9e-07 29.8 0.1 1.6e-05 25.2 0.0 2.6 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352681571|ref|YP_004892095.1| - 3.9e-06 27.2 0.0 0.00064 20.1 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|352681571|ref|YP_004892095.1| - 0.00011 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|352681571|ref|YP_004892095.1| - 0.00038 20.7 0.0 0.00082 19.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352681571|ref|YP_004892095.1| - 0.0011 18.6 0.0 0.14 11.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|352681571|ref|YP_004892095.1| - 0.0086 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|352681571|ref|YP_004892095.1| - 0.011 14.6 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.10 gi|352681571|ref|YP_004892095.1| - 0.024 14.0 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|352681571|ref|YP_004892095.1| - 0.028 13.9 0.1 0.058 12.9 0.0 1.5 2 0 0 2 2 2 0 Met-10+ like-protein PaREP1 PF05942.6 gi|352681573|ref|YP_004892097.1| - 7e-35 119.3 3.5 7e-35 119.3 2.4 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family MIT PF04212.13 gi|352681573|ref|YP_004892097.1| - 0.061 13.2 0.5 0.21 11.4 0.2 2.1 2 1 0 2 2 2 0 MIT (microtubule interacting and transport) domain SPOR PF05036.8 gi|352681575|ref|YP_004892099.1| - 0.00071 19.6 0.2 0.002 18.2 0.1 1.7 1 0 0 1 1 1 1 Sporulation related domain Exonuc_VII_L PF02601.10 gi|352681575|ref|YP_004892099.1| - 1.1 8.4 5.9 1.5 7.8 4.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit V_ATPase_I PF01496.14 gi|352681575|ref|YP_004892099.1| - 1.2 6.9 6.5 1.8 6.3 4.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Tropomyosin PF00261.15 gi|352681575|ref|YP_004892099.1| - 2.3 7.2 26.4 0.39 9.7 14.8 1.9 2 0 0 2 2 2 0 Tropomyosin DUF4337 PF14235.1 gi|352681575|ref|YP_004892099.1| - 8.4 6.2 17.2 4.1e+02 0.7 11.9 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) PaREP1 PF05942.6 gi|352681579|ref|YP_004892103.1| - 1.5e-27 95.7 7.7 2.1e-27 95.2 5.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|352681579|ref|YP_004892103.1| - 0.0038 16.8 1.0 0.021 14.5 0.1 2.5 2 1 1 3 3 3 1 Protein of unknown function (DUF357) HEPN PF05168.9 gi|352681579|ref|YP_004892103.1| - 0.88 9.4 5.5 0.31 10.9 0.8 2.2 2 1 0 2 2 2 0 HEPN domain PTS_IIA PF02255.11 gi|352681579|ref|YP_004892103.1| - 1.3 8.9 4.1 0.38 10.6 0.2 2.0 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit Arch_ATPase PF01637.13 gi|352681581|ref|YP_004892105.1| - 8.7e-20 71.4 0.1 1.8e-18 67.0 0.1 2.3 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|352681581|ref|YP_004892105.1| - 3e-08 33.7 0.0 5.8e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|352681581|ref|YP_004892105.1| - 1.8e-06 27.8 0.0 3.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352681581|ref|YP_004892105.1| - 0.00086 19.4 0.0 0.0018 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681581|ref|YP_004892105.1| - 0.0035 17.3 7.2 0.12 12.3 0.2 3.7 2 2 1 3 3 3 2 AAA ATPase domain RolB_RolC PF02027.12 gi|352681581|ref|YP_004892105.1| - 0.13 11.3 0.0 0.37 9.9 0.0 1.7 2 0 0 2 2 2 0 RolB/RolC glucosidase family TK PF00265.13 gi|352681583|ref|YP_004892107.1| - 2.5e-45 154.1 0.0 2.8e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.1 gi|352681583|ref|YP_004892107.1| - 0.00068 19.5 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|352681583|ref|YP_004892107.1| - 0.052 12.9 0.0 0.052 12.9 0.0 1.2 1 1 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|352681583|ref|YP_004892107.1| - 0.081 12.6 0.0 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|352681583|ref|YP_004892107.1| - 0.091 12.8 0.0 0.44 10.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain Aldo_ket_red PF00248.16 gi|352681584|ref|YP_004892108.1| - 1.2e-33 116.1 0.0 3.4e-33 114.6 0.0 1.6 1 1 0 1 1 1 1 Aldo/keto reductase family CTP_transf_2 PF01467.21 gi|352681585|ref|YP_004892109.1| - 4.2e-13 49.6 0.0 5.8e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Glyco_trans_4_4 PF13579.1 gi|352681585|ref|YP_004892109.1| - 0.0075 16.4 0.0 0.011 15.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain tRNA_m1G_MT PF01746.16 gi|352681586|ref|YP_004892110.1| - 2.9e-11 43.3 0.0 8.4e-11 41.7 0.0 1.7 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase 4HBT PF03061.17 gi|352681587|ref|YP_004892111.1| - 2e-16 59.8 1.2 3e-16 59.3 0.8 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|352681587|ref|YP_004892111.1| - 2.7e-07 30.6 0.7 3.8e-07 30.1 0.5 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Rhomboid PF01694.17 gi|352681588|ref|YP_004892112.1| - 9.5e-18 64.6 6.4 9.5e-18 64.6 4.4 1.7 2 0 0 2 2 2 1 Rhomboid family Plasmid_stab_B PF10784.4 gi|352681588|ref|YP_004892112.1| - 0.038 13.6 0.4 0.087 12.4 0.2 1.6 1 0 0 1 1 1 0 Plasmid stability protein DUF4634 PF15465.1 gi|352681588|ref|YP_004892112.1| - 0.074 13.2 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4634) Thermopsin PF05317.6 gi|352681589|ref|YP_004892113.1| - 3e-68 229.6 21.5 3.5e-68 229.3 14.9 1.0 1 0 0 1 1 1 1 Thermopsin TM_helix PF05552.7 gi|352681590|ref|YP_004892114.1| - 1.9e-11 43.4 7.4 2e-07 30.5 1.7 4.5 5 1 0 5 5 5 2 Conserved TM helix G_glu_transpept PF01019.16 gi|352681591|ref|YP_004892115.1| - 1.3e-63 215.2 0.0 5.3e-63 213.2 0.0 1.8 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase PALP PF00291.20 gi|352681592|ref|YP_004892116.1| - 1e-55 189.1 0.1 1.1e-55 189.0 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|352681592|ref|YP_004892116.1| - 0.0057 15.8 2.3 0.0096 15.1 1.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|352681592|ref|YP_004892116.1| - 0.064 13.0 0.5 0.11 12.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|352681592|ref|YP_004892116.1| - 0.073 12.5 3.0 0.14 11.7 2.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|352681592|ref|YP_004892116.1| - 0.11 11.5 4.3 1.3 8.1 0.2 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com DFP PF04127.10 gi|352681592|ref|YP_004892116.1| - 0.18 11.4 0.5 0.3 10.7 0.3 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein zf-RING_3 PF14369.1 gi|352681592|ref|YP_004892116.1| - 0.34 10.9 2.5 0.8 9.7 1.8 1.6 1 1 0 1 1 1 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|352681592|ref|YP_004892116.1| - 0.56 9.8 4.7 6.7 6.3 0.1 2.5 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352681592|ref|YP_004892116.1| - 0.91 9.2 5.0 7.9 6.2 0.1 2.5 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|352681592|ref|YP_004892116.1| - 1.2 8.7 5.9 2.3 7.8 0.2 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|352681592|ref|YP_004892116.1| - 1.5 8.5 5.4 2.9 7.6 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_RNApol_7kD PF03604.8 gi|352681592|ref|YP_004892116.1| - 2.9 7.4 5.6 6.6 6.2 3.9 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0047 PF01894.12 gi|352681593|ref|YP_004892117.1| - 7.8e-37 125.6 0.0 9.1e-37 125.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Glyco_hydro_12 PF01670.11 gi|352681594|ref|YP_004892118.1| - 5e-09 36.1 0.0 1.7e-08 34.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 PaREP1 PF05942.6 gi|352681597|ref|YP_004892121.1| - 1.2e-29 102.4 9.3 1.2e-29 102.4 6.5 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|352681597|ref|YP_004892121.1| - 0.0004 20.2 2.4 0.0025 17.7 1.6 2.1 1 1 0 1 1 1 1 HEPN domain DUF357 PF04010.8 gi|352681597|ref|YP_004892121.1| - 0.0084 15.7 0.2 0.019 14.6 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF357) TPR_11 PF13414.1 gi|352681597|ref|YP_004892121.1| - 0.028 14.0 3.0 0.28 10.8 2.1 2.3 1 1 0 1 1 1 0 TPR repeat TPR_2 PF07719.12 gi|352681597|ref|YP_004892121.1| - 0.24 11.3 6.0 1.6 8.8 0.3 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4398 PF14346.1 gi|352681597|ref|YP_004892121.1| - 0.43 10.6 9.6 0.064 13.3 3.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) TPR_1 PF00515.23 gi|352681597|ref|YP_004892121.1| - 0.82 9.3 2.6 3.6 7.3 0.3 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TraC PF07820.7 gi|352681597|ref|YP_004892121.1| - 3.4 7.9 6.6 0.33 11.1 1.5 1.7 2 0 0 2 2 2 0 TraC-like protein Methyltransf_26 PF13659.1 gi|352681597|ref|YP_004892121.1| - 9 6.3 6.3 19 5.3 4.4 1.8 1 1 0 1 1 1 0 Methyltransferase domain McrBC PF10117.4 gi|352681598|ref|YP_004892122.1| - 9.9e-06 24.6 0.0 0.0003 19.8 0.0 2.1 2 0 0 2 2 2 2 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.9 gi|352681599|ref|YP_004892123.1| - 2.7e-16 59.5 0.0 4.4e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|352681599|ref|YP_004892123.1| - 9.5e-06 25.7 0.3 3.1e-05 24.0 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|352681599|ref|YP_004892123.1| - 0.00032 20.1 0.2 0.0024 17.2 0.0 2.5 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|352681599|ref|YP_004892123.1| - 0.039 13.3 0.0 0.072 12.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_3 PF07726.6 gi|352681599|ref|YP_004892123.1| - 0.071 12.7 0.1 13 5.4 0.0 2.5 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|352681599|ref|YP_004892123.1| - 0.088 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|352681599|ref|YP_004892123.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|352681599|ref|YP_004892123.1| - 0.13 13.0 0.1 0.88 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|352681601|ref|YP_004892125.1| - 2.4e-12 47.4 0.0 1.2e-05 25.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|352681601|ref|YP_004892125.1| - 2.3e-06 26.9 0.0 0.00077 18.6 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|352681601|ref|YP_004892125.1| - 0.00016 20.9 0.0 0.00026 20.2 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681601|ref|YP_004892125.1| - 0.00068 19.1 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.3 gi|352681601|ref|YP_004892125.1| - 0.0039 16.3 0.0 0.021 13.8 0.0 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2813) AAA_23 PF13476.1 gi|352681601|ref|YP_004892125.1| - 0.0067 16.7 0.0 0.0095 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF2250 PF10007.4 gi|352681602|ref|YP_004892126.1| - 6.2e-24 83.7 1.8 7.4e-24 83.4 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|352681602|ref|YP_004892126.1| - 0.00013 21.5 0.1 0.00018 21.1 0.1 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|352681602|ref|YP_004892126.1| - 0.0013 18.3 0.1 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|352681602|ref|YP_004892126.1| - 0.0024 17.9 0.1 0.0043 17.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|352681602|ref|YP_004892126.1| - 0.0037 17.0 0.0 0.16 11.8 0.0 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|352681602|ref|YP_004892126.1| - 0.012 15.9 0.4 0.089 13.1 0.3 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|352681602|ref|YP_004892126.1| - 0.014 15.2 0.9 0.021 14.6 0.7 1.3 1 0 0 1 1 1 0 Replication-relaxation PadR PF03551.9 gi|352681602|ref|YP_004892126.1| - 0.03 14.0 3.7 1.1 9.1 2.6 2.2 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF4423 PF14394.1 gi|352681602|ref|YP_004892126.1| - 0.036 13.6 0.0 0.045 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_24 PF13412.1 gi|352681602|ref|YP_004892126.1| - 0.055 12.8 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|352681602|ref|YP_004892126.1| - 0.099 12.7 0.2 0.53 10.3 0.0 2.0 2 0 0 2 2 2 0 HemN C-terminal domain AAA_21 PF13304.1 gi|352681603|ref|YP_004892127.1| - 4.7e-24 85.8 0.0 5.3e-14 52.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|352681603|ref|YP_004892127.1| - 1.2e-12 48.5 0.0 1.8e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|352681603|ref|YP_004892127.1| - 3.1e-11 42.9 0.0 5.3e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|352681603|ref|YP_004892127.1| - 1.7e-10 40.5 0.0 2.7e-09 36.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|352681603|ref|YP_004892127.1| - 0.00074 18.9 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.3 gi|352681603|ref|YP_004892127.1| - 0.0012 18.0 0.0 1.1 8.2 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_22 PF13401.1 gi|352681603|ref|YP_004892127.1| - 0.0021 18.2 0.0 0.36 10.9 0.1 2.3 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|352681603|ref|YP_004892127.1| - 0.0044 17.3 0.0 0.061 13.6 0.0 2.1 2 0 0 2 2 2 1 ABC transporter DUF258 PF03193.11 gi|352681603|ref|YP_004892127.1| - 0.026 13.6 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|352681603|ref|YP_004892127.1| - 0.033 14.1 0.1 0.34 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_PrkA PF08298.6 gi|352681603|ref|YP_004892127.1| - 0.084 11.5 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain Zeta_toxin PF06414.7 gi|352681603|ref|YP_004892127.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF4276 PF14103.1 gi|352681604|ref|YP_004892128.1| - 0.00012 22.0 0.1 0.00017 21.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4276) DUF1626 PF07788.6 gi|352681606|ref|YP_004892130.1| - 9.3e-29 99.0 1.2 3.1e-28 97.3 0.8 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|352681606|ref|YP_004892130.1| - 5.1e-28 96.6 45.6 1.2e-15 56.9 7.5 5.9 1 1 3 4 4 4 4 Protein of unknown function (DUF3782) DUF2730 PF10805.3 gi|352681606|ref|YP_004892130.1| - 0.0013 18.4 17.1 0.095 12.4 2.7 3.4 1 1 2 3 3 3 3 Protein of unknown function (DUF2730) EF-hand_8 PF13833.1 gi|352681606|ref|YP_004892130.1| - 0.016 14.7 0.9 13 5.4 0.0 4.2 2 1 0 2 2 2 0 EF-hand domain pair DUF1280 PF06918.9 gi|352681606|ref|YP_004892130.1| - 0.029 13.5 2.7 0.93 8.6 0.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1280) EMP24_GP25L PF01105.19 gi|352681606|ref|YP_004892130.1| - 0.047 13.4 0.3 0.047 13.4 0.2 2.8 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Spc7 PF08317.6 gi|352681606|ref|YP_004892130.1| - 0.061 11.9 17.5 0.2 10.2 5.2 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein NPV_P10 PF05531.7 gi|352681606|ref|YP_004892130.1| - 0.077 13.2 2.0 19 5.5 0.8 3.3 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein TusA PF01206.12 gi|352681606|ref|YP_004892130.1| - 0.089 12.4 2.7 1.2 8.8 0.3 3.5 3 0 0 3 3 3 0 Sulfurtransferase TusA Glyco_transf_28 PF03033.15 gi|352681606|ref|YP_004892130.1| - 0.11 12.2 5.5 1.6 8.4 2.3 3.0 1 1 1 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Vac_Fusion PF02346.11 gi|352681606|ref|YP_004892130.1| - 0.19 11.1 8.7 1.5 8.2 0.2 3.4 3 0 0 3 3 3 0 Chordopoxvirus fusion protein EFhand_Ca_insen PF08726.5 gi|352681606|ref|YP_004892130.1| - 0.19 11.7 7.6 7.6 6.5 0.2 3.7 1 1 2 3 3 3 0 Ca2+ insensitive EF hand Peptidase_M19 PF01244.16 gi|352681606|ref|YP_004892130.1| - 0.24 10.3 1.8 0.33 9.8 0.8 1.5 1 1 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) DUF1664 PF07889.7 gi|352681606|ref|YP_004892130.1| - 0.32 10.7 11.8 1.2 8.8 2.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) MtrG PF04210.8 gi|352681606|ref|YP_004892130.1| - 0.36 10.5 6.0 10 5.8 0.1 3.5 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Syntaxin_2 PF14523.1 gi|352681606|ref|YP_004892130.1| - 0.36 10.8 7.0 2 8.4 0.7 3.2 1 1 2 3 3 3 0 Syntaxin-like protein SnAC PF14619.1 gi|352681606|ref|YP_004892130.1| - 0.39 10.9 8.4 2.8 8.1 1.2 3.5 2 1 1 3 3 3 0 Snf2-ATP coupling, chromatin remodelling complex DUF480 PF04337.7 gi|352681606|ref|YP_004892130.1| - 0.85 9.4 6.4 3.9 7.3 1.2 3.0 1 1 2 3 3 3 0 Protein of unknown function, DUF480 DUF479 PF04336.7 gi|352681606|ref|YP_004892130.1| - 1.1 9.3 5.5 8.4 6.5 0.3 2.8 1 1 2 3 3 3 0 Protein of unknown function, DUF479 Uds1 PF15456.1 gi|352681606|ref|YP_004892130.1| - 2 8.4 25.4 0.8 9.6 7.0 2.7 2 1 1 3 3 3 0 Up-regulated During Septation AF0941-like PF14591.1 gi|352681606|ref|YP_004892130.1| - 2.4 8.2 13.3 0.67 10.0 0.9 3.3 2 1 0 2 2 2 0 AF0941-like Matrilin_ccoil PF10393.4 gi|352681606|ref|YP_004892130.1| - 2.5 7.5 10.4 30 4.0 0.5 4.5 4 2 1 5 5 5 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF3349 PF11829.3 gi|352681606|ref|YP_004892130.1| - 3.2 8.2 6.5 9.8 6.6 0.5 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3349) Acetyltransf_11 PF13720.1 gi|352681606|ref|YP_004892130.1| - 7.1 6.9 6.5 53 4.1 0.1 3.4 2 1 1 3 3 3 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF947 PF06102.7 gi|352681606|ref|YP_004892130.1| - 7.6 6.3 13.4 0.83 9.4 4.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF947) MFS_1 PF07690.11 gi|352681607|ref|YP_004892131.1| - 6.4e-18 64.5 50.1 6.4e-14 51.4 12.7 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|352681607|ref|YP_004892131.1| - 0.0013 18.5 0.2 0.0013 18.5 0.1 3.0 4 0 0 4 4 4 1 MFS_1 like family Folate_carrier PF01770.13 gi|352681607|ref|YP_004892131.1| - 0.031 12.7 9.3 0.025 13.1 1.6 2.2 2 0 0 2 2 2 0 Reduced folate carrier COMP PF11598.3 gi|352681609|ref|YP_004892133.1| - 0.17 11.9 0.2 0.34 11.0 0.1 1.4 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein ABC2_membrane PF01061.19 gi|352681610|ref|YP_004892134.1| - 1.9e-06 27.2 21.6 7.2e-06 25.3 15.2 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|352681610|ref|YP_004892134.1| - 0.0001 21.4 18.7 0.00013 21.1 13.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|352681611|ref|YP_004892135.1| - 3.4e-27 95.3 0.0 5.3e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681611|ref|YP_004892135.1| - 4.1e-15 56.5 0.0 4e-10 40.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352681611|ref|YP_004892135.1| - 1e-05 24.8 0.0 0.022 13.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|352681611|ref|YP_004892135.1| - 0.0012 18.3 0.6 0.0055 16.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681611|ref|YP_004892135.1| - 0.0019 18.2 0.1 0.0032 17.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|352681611|ref|YP_004892135.1| - 0.0034 16.8 0.0 0.0062 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|352681611|ref|YP_004892135.1| - 0.0045 16.6 0.2 0.19 11.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|352681611|ref|YP_004892135.1| - 0.0063 15.6 0.0 2.4 7.0 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|352681611|ref|YP_004892135.1| - 0.0073 16.6 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|352681611|ref|YP_004892135.1| - 0.0094 15.8 0.0 0.047 13.6 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MutS_V PF00488.16 gi|352681611|ref|YP_004892135.1| - 0.011 15.1 0.0 1.2 8.4 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA PF00004.24 gi|352681611|ref|YP_004892135.1| - 0.012 15.8 0.0 0.033 14.3 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|352681611|ref|YP_004892135.1| - 0.013 14.9 0.2 1.4 8.3 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|352681611|ref|YP_004892135.1| - 0.014 14.9 0.1 0.034 13.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|352681611|ref|YP_004892135.1| - 0.014 15.0 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|352681611|ref|YP_004892135.1| - 0.015 15.0 0.0 0.039 13.6 0.0 1.7 2 0 0 2 2 1 0 NACHT domain AAA_14 PF13173.1 gi|352681611|ref|YP_004892135.1| - 0.017 15.0 0.0 0.078 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|352681611|ref|YP_004892135.1| - 0.022 13.9 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|352681611|ref|YP_004892135.1| - 0.03 13.7 0.0 0.053 12.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|352681611|ref|YP_004892135.1| - 0.042 12.6 0.0 0.43 9.3 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain DUF3584 PF12128.3 gi|352681611|ref|YP_004892135.1| - 0.05 10.9 0.2 0.068 10.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_22 PF13401.1 gi|352681611|ref|YP_004892135.1| - 0.052 13.6 0.1 0.14 12.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|352681611|ref|YP_004892135.1| - 0.063 12.7 0.3 0.15 11.5 0.2 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.7 gi|352681611|ref|YP_004892135.1| - 0.07 12.2 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|352681611|ref|YP_004892135.1| - 0.073 12.9 0.5 0.18 11.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|352681611|ref|YP_004892135.1| - 0.076 12.7 0.1 0.53 9.9 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_10 PF12846.2 gi|352681611|ref|YP_004892135.1| - 0.14 11.5 0.0 1.4 8.2 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain DUF1341 PF07071.6 gi|352681611|ref|YP_004892135.1| - 0.14 11.6 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) DUF169 PF02596.10 gi|352681612|ref|YP_004892136.1| - 1.7e-31 109.3 0.0 2e-31 109.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AA_permease_2 PF13520.1 gi|352681614|ref|YP_004892138.1| - 7.9e-15 54.3 30.3 1.6e-14 53.2 21.0 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|352681614|ref|YP_004892138.1| - 1.8e-08 33.1 33.6 1.4e-07 30.2 22.7 3.2 1 1 1 2 2 2 1 Amino acid permease DUF3493 PF11998.3 gi|352681614|ref|YP_004892138.1| - 1.8 8.5 8.3 3.5 7.5 0.2 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3493) Pyrophosphatase PF00719.14 gi|352681615|ref|YP_004892139.1| - 1.6e-57 193.3 0.0 1.8e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase ABC_tran PF00005.22 gi|352681616|ref|YP_004892140.1| - 2.9e-26 92.4 0.0 3.5e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681616|ref|YP_004892140.1| - 8.9e-08 32.4 0.0 0.00043 20.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352681616|ref|YP_004892140.1| - 3.1e-05 23.2 0.1 0.16 11.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681616|ref|YP_004892140.1| - 0.00085 18.8 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|352681616|ref|YP_004892140.1| - 0.0012 19.2 0.0 0.0017 18.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|352681616|ref|YP_004892140.1| - 0.0032 16.5 0.1 0.0052 15.8 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|352681616|ref|YP_004892140.1| - 0.0052 16.1 0.1 0.007 15.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|352681616|ref|YP_004892140.1| - 0.006 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681616|ref|YP_004892140.1| - 0.0067 16.4 0.5 0.022 14.7 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|352681616|ref|YP_004892140.1| - 0.0075 15.9 0.2 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|352681616|ref|YP_004892140.1| - 0.014 15.3 0.3 0.15 11.9 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|352681616|ref|YP_004892140.1| - 0.021 15.0 0.0 0.09 12.9 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|352681616|ref|YP_004892140.1| - 0.025 14.0 0.5 0.035 13.5 0.3 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|352681616|ref|YP_004892140.1| - 0.034 14.3 0.8 0.1 12.7 0.1 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|352681616|ref|YP_004892140.1| - 0.039 13.6 0.1 0.073 12.7 0.1 1.4 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|352681616|ref|YP_004892140.1| - 0.053 13.1 0.1 0.083 12.5 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|352681616|ref|YP_004892140.1| - 0.058 13.2 0.1 0.13 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|352681616|ref|YP_004892140.1| - 0.094 12.4 0.2 0.28 10.9 0.2 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|352681616|ref|YP_004892140.1| - 0.11 11.9 0.1 0.29 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|352681616|ref|YP_004892140.1| - 0.12 11.4 0.1 0.33 10.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF3584 PF12128.3 gi|352681616|ref|YP_004892140.1| - 0.13 9.6 0.1 0.18 9.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_17 PF13207.1 gi|352681616|ref|YP_004892140.1| - 0.17 12.7 0.2 0.29 11.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|352681616|ref|YP_004892140.1| - 0.17 11.3 0.5 0.32 10.4 0.1 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|352681617|ref|YP_004892141.1| - 8.9e-29 100.5 0.0 1.1e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681617|ref|YP_004892141.1| - 6.4e-11 42.7 0.4 5.3e-06 26.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352681617|ref|YP_004892141.1| - 4.5e-07 29.3 0.3 0.0015 17.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681617|ref|YP_004892141.1| - 1.7e-05 24.2 0.0 2.9e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|352681617|ref|YP_004892141.1| - 2.6e-05 24.6 0.0 4.4e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681617|ref|YP_004892141.1| - 0.00038 20.5 0.1 0.00054 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|352681617|ref|YP_004892141.1| - 0.00093 20.0 0.2 0.0018 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|352681617|ref|YP_004892141.1| - 0.0013 18.6 0.2 0.0027 17.6 0.1 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase T2SE PF00437.15 gi|352681617|ref|YP_004892141.1| - 0.003 16.4 0.0 0.0074 15.2 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|352681617|ref|YP_004892141.1| - 0.0033 16.6 0.0 0.0055 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|352681617|ref|YP_004892141.1| - 0.0039 16.6 0.2 0.04 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|352681617|ref|YP_004892141.1| - 0.0045 16.7 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|352681617|ref|YP_004892141.1| - 0.008 16.0 0.0 0.011 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|352681617|ref|YP_004892141.1| - 0.012 15.5 0.1 0.028 14.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|352681617|ref|YP_004892141.1| - 0.014 15.5 0.3 0.4 10.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|352681617|ref|YP_004892141.1| - 0.015 14.3 0.0 0.036 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|352681617|ref|YP_004892141.1| - 0.017 14.2 0.0 1.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin Dynamin_N PF00350.18 gi|352681617|ref|YP_004892141.1| - 0.019 14.8 0.1 0.019 14.7 0.0 1.4 1 1 0 1 1 1 0 Dynamin family cobW PF02492.14 gi|352681617|ref|YP_004892141.1| - 0.02 14.3 0.2 0.039 13.3 0.1 1.5 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|352681617|ref|YP_004892141.1| - 0.021 14.2 0.0 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_ATPase PF09818.4 gi|352681617|ref|YP_004892141.1| - 0.026 13.1 0.9 0.2 10.2 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.1 gi|352681617|ref|YP_004892141.1| - 0.026 14.0 0.0 0.037 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|352681617|ref|YP_004892141.1| - 0.027 13.9 0.1 0.065 12.7 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|352681617|ref|YP_004892141.1| - 0.03 14.4 0.0 0.068 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|352681617|ref|YP_004892141.1| - 0.031 13.9 0.1 0.079 12.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|352681617|ref|YP_004892141.1| - 0.036 13.8 0.6 0.13 11.9 0.4 2.1 1 1 0 1 1 1 0 Part of AAA domain FeoB_N PF02421.13 gi|352681617|ref|YP_004892141.1| - 0.044 13.0 0.1 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_25 PF13481.1 gi|352681617|ref|YP_004892141.1| - 0.082 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|352681617|ref|YP_004892141.1| - 0.086 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|352681617|ref|YP_004892141.1| - 0.087 12.2 0.1 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_13 PF13166.1 gi|352681617|ref|YP_004892141.1| - 0.095 11.1 0.1 0.35 9.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|352681617|ref|YP_004892141.1| - 0.099 12.3 0.1 0.14 11.8 0.1 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|352681617|ref|YP_004892141.1| - 0.13 12.1 0.1 0.35 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|352681617|ref|YP_004892141.1| - 0.14 11.6 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|352681617|ref|YP_004892141.1| - 0.14 12.4 1.6 0.53 10.5 0.3 2.2 1 1 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|352681618|ref|YP_004892142.1| - 8.1e-15 54.5 37.0 8.1e-15 54.5 25.7 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|352681619|ref|YP_004892143.1| - 2.1e-23 82.6 46.2 2.5e-23 82.4 32.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|352681620|ref|YP_004892144.1| - 1.1e-54 186.0 1.2 1.4e-54 185.7 0.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|352681620|ref|YP_004892144.1| - 1.1e-28 100.1 0.0 1.5e-28 99.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|352681620|ref|YP_004892144.1| - 1.3e-06 27.4 0.2 2e-05 23.5 0.2 2.0 1 1 0 1 1 1 1 Receptor family ligand binding region DrsE PF02635.10 gi|352681621|ref|YP_004892145.1| - 8.9e-09 35.4 0.0 9.9e-09 35.3 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Clathrin-link PF09268.5 gi|352681621|ref|YP_004892145.1| - 0.23 10.5 1.1 0.43 9.6 0.5 1.6 2 0 0 2 2 2 0 Clathrin, heavy-chain linker Arc_trans_TRASH PF08394.5 gi|352681622|ref|YP_004892146.1| - 0.0029 17.7 4.8 0.0041 17.2 3.3 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|352681622|ref|YP_004892146.1| - 0.0079 15.8 8.7 0.014 15.0 6.0 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.13 gi|352681622|ref|YP_004892146.1| - 0.049 13.5 3.8 0.081 12.8 2.7 1.4 1 1 0 1 1 1 0 MYND finger zf-ribbon_3 PF13248.1 gi|352681622|ref|YP_004892146.1| - 0.073 12.3 1.4 0.14 11.4 1.0 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-SNAP50_C PF12251.3 gi|352681622|ref|YP_004892146.1| - 0.075 12.3 1.3 0.08 12.3 0.9 1.0 1 0 0 1 1 1 0 snRNA-activating protein of 50kDa MW C terminal RPAP2_Rtr1 PF04181.8 gi|352681622|ref|YP_004892146.1| - 0.18 11.8 2.6 0.22 11.6 1.8 1.3 1 1 0 1 1 1 0 Rtr1/RPAP2 family zf-HIT PF04438.11 gi|352681622|ref|YP_004892146.1| - 1.3 8.7 6.4 4.6 6.9 4.4 1.9 1 1 0 1 1 1 0 HIT zinc finger DUF3330 PF11809.3 gi|352681622|ref|YP_004892146.1| - 1.5 8.7 7.9 8.6 6.3 5.5 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3330) DUF329 PF03884.9 gi|352681622|ref|YP_004892146.1| - 1.6 8.3 7.2 9.1 5.9 5.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF329) DUF581 PF04570.9 gi|352681622|ref|YP_004892146.1| - 3.7 6.9 6.8 17 4.7 4.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF581) EamA PF00892.15 gi|352681623|ref|YP_004892147.1| - 2.2e-30 105.3 25.8 9.7e-17 61.1 5.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|352681623|ref|YP_004892147.1| - 1.3e-05 24.9 10.8 0.00059 19.5 0.2 3.3 3 1 0 3 3 3 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|352681623|ref|YP_004892147.1| - 3e-05 24.1 22.9 0.0046 17.1 3.2 3.6 2 2 1 3 3 3 2 Multidrug resistance efflux transporter DrsE_2 PF13686.1 gi|352681624|ref|YP_004892148.1| - 6.1e-08 32.5 0.0 7.7e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|352681624|ref|YP_004892148.1| - 0.038 14.0 0.0 0.15 12.1 0.0 1.8 1 1 0 1 1 1 0 DsrE/DsrF-like family HEM4 PF02602.10 gi|352681625|ref|YP_004892149.1| - 3.1e-18 65.8 4.4 4.1e-18 65.4 3.1 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TroA PF01297.12 gi|352681625|ref|YP_004892149.1| - 0.033 13.4 0.1 0.052 12.7 0.1 1.3 1 0 0 1 1 1 0 Periplasmic solute binding protein family AhpC-TSA PF00578.16 gi|352681626|ref|YP_004892150.1| - 4.4e-38 129.7 0.0 5.2e-38 129.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|352681626|ref|YP_004892150.1| - 5e-22 78.0 0.0 5.7e-22 77.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|352681626|ref|YP_004892150.1| - 0.046 13.6 0.0 0.34 10.8 0.0 2.0 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme UPF0175 PF03683.8 gi|352681627|ref|YP_004892151.1| - 0.02 14.3 0.5 0.084 12.3 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.1 gi|352681627|ref|YP_004892151.1| - 0.078 12.5 0.2 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain PIN PF01850.16 gi|352681628|ref|YP_004892152.1| - 0.11 12.8 1.0 0.18 12.1 0.1 1.8 2 1 0 2 2 2 0 PIN domain UPF0175 PF03683.8 gi|352681629|ref|YP_004892153.1| - 0.015 14.7 0.7 0.16 11.4 0.5 2.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0175) DUF234 PF03008.9 gi|352681630|ref|YP_004892154.1| - 3e-17 62.5 0.0 5.6e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function Arch_ATPase PF01637.13 gi|352681630|ref|YP_004892154.1| - 8.5e-17 61.6 0.0 1.5e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase MarR_2 PF12802.2 gi|352681630|ref|YP_004892154.1| - 0.018 14.6 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family AAA_22 PF13401.1 gi|352681630|ref|YP_004892154.1| - 0.022 14.9 0.3 0.075 13.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain FaeA PF04703.7 gi|352681630|ref|YP_004892154.1| - 0.03 14.4 0.1 0.062 13.4 0.1 1.5 1 0 0 1 1 1 0 FaeA-like protein TrmB PF01978.14 gi|352681630|ref|YP_004892154.1| - 0.036 13.7 0.1 0.075 12.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|352681630|ref|YP_004892154.1| - 0.049 13.3 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 CDC6, C terminal HTH_IclR PF09339.5 gi|352681630|ref|YP_004892154.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|352681630|ref|YP_004892154.1| - 0.096 12.3 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|352681630|ref|YP_004892154.1| - 0.11 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.1 gi|352681630|ref|YP_004892154.1| - 0.13 11.6 0.2 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Arch_ATPase PF01637.13 gi|352681631|ref|YP_004892155.1| - 0.0005 19.8 0.1 0.00052 19.7 0.1 1.0 1 0 0 1 1 1 1 Archaeal ATPase Pyr_redox_2 PF07992.9 gi|352681633|ref|YP_004892157.1| - 4.6e-33 114.7 8.1 2.5e-32 112.4 5.6 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|352681633|ref|YP_004892157.1| - 4.9e-29 101.3 7.4 1e-21 77.2 0.1 3.0 1 1 2 3 3 3 3 Glucose inhibited division protein A Pyr_redox_dim PF02852.17 gi|352681633|ref|YP_004892157.1| - 2.6e-20 72.4 0.0 5.8e-20 71.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|352681633|ref|YP_004892157.1| - 4e-13 49.5 6.4 9.3e-11 41.9 0.9 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|352681633|ref|YP_004892157.1| - 8.9e-13 48.7 0.0 1.9e-08 34.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|352681633|ref|YP_004892157.1| - 2.4e-09 36.7 3.4 1.2e-08 34.4 1.3 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|352681633|ref|YP_004892157.1| - 2e-05 23.6 12.0 0.00022 20.1 2.7 3.1 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.19 gi|352681633|ref|YP_004892157.1| - 7.4e-05 21.8 19.6 0.001 18.0 1.0 3.3 2 2 1 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|352681633|ref|YP_004892157.1| - 0.00036 19.1 8.1 0.00076 18.0 1.1 3.1 4 0 0 4 4 4 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|352681633|ref|YP_004892157.1| - 0.00093 18.9 0.1 0.00093 18.9 0.1 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|352681633|ref|YP_004892157.1| - 0.0021 17.6 1.0 0.6 9.6 0.6 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|352681633|ref|YP_004892157.1| - 0.0088 15.0 6.9 0.56 9.0 1.0 2.7 2 1 1 3 3 3 2 Lycopene cyclase protein K_oxygenase PF13434.1 gi|352681633|ref|YP_004892157.1| - 0.025 13.5 0.0 0.081 11.8 0.0 1.6 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DUF374 PF04028.8 gi|352681633|ref|YP_004892157.1| - 0.06 12.5 1.0 0.26 10.5 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF374) Trp_halogenase PF04820.9 gi|352681633|ref|YP_004892157.1| - 0.27 9.8 2.6 1.5 7.3 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Acylphosphatase PF00708.13 gi|352681634|ref|YP_004892158.1| - 2e-21 75.8 0.0 3.9e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase TusA PF01206.12 gi|352681635|ref|YP_004892159.1| - 3.2e-25 87.5 0.0 3.7e-25 87.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|352681635|ref|YP_004892159.1| - 3.3e-07 29.7 0.3 1.2e-06 28.0 0.2 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|352681637|ref|YP_004892161.1| - 4.8e-29 101.0 0.4 2e-28 99.0 0.3 1.7 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|352681637|ref|YP_004892161.1| - 5.6e-08 32.8 0.1 3.8e-07 30.2 0.0 1.9 1 1 0 1 1 1 1 DsrE/DsrF-like family MtrG PF04210.8 gi|352681637|ref|YP_004892161.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G DrsE PF02635.10 gi|352681638|ref|YP_004892162.1| - 4.9e-16 58.8 0.0 5.2e-16 58.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|352681638|ref|YP_004892162.1| - 2.5e-08 33.8 0.9 0.00015 21.5 0.1 2.1 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family NdhN PF11909.3 gi|352681638|ref|YP_004892162.1| - 0.038 13.3 0.0 0.051 12.9 0.0 1.1 1 0 0 1 1 1 0 NADH-quinone oxidoreductase cyanobacterial subunit N SCAMP PF04144.8 gi|352681638|ref|YP_004892162.1| - 0.045 13.6 0.0 0.08 12.8 0.0 1.3 1 1 0 1 1 1 0 SCAMP family GATase_3 PF07685.9 gi|352681639|ref|YP_004892163.1| - 1.1e-28 99.8 0.0 1.7e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|352681639|ref|YP_004892163.1| - 4.7e-20 71.8 0.0 6.9e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|352681639|ref|YP_004892163.1| - 1.5e-14 54.0 1.8 5.6e-10 39.1 0.0 2.6 2 1 1 3 3 3 2 AAA domain TP_methylase PF00590.15 gi|352681640|ref|YP_004892164.1| - 8.9e-44 149.7 1.4 1e-43 149.5 1.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TusA PF01206.12 gi|352681641|ref|YP_004892165.1| - 6.3e-25 86.5 0.0 7.1e-25 86.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DsrC PF04358.8 gi|352681642|ref|YP_004892166.1| - 1.6e-37 128.0 0.0 1.8e-37 127.8 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein MerR-DNA-bind PF09278.6 gi|352681642|ref|YP_004892166.1| - 0.048 14.0 0.1 0.68 10.3 0.0 2.3 2 1 0 2 2 2 0 MerR, DNA binding TrmB PF01978.14 gi|352681643|ref|YP_004892167.1| - 1.1e-08 34.6 0.0 1.9e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|352681643|ref|YP_004892167.1| - 2.2e-06 27.2 0.0 0.00012 21.6 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|352681643|ref|YP_004892167.1| - 0.00044 19.9 0.0 0.00083 19.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|352681643|ref|YP_004892167.1| - 0.0018 18.1 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|352681643|ref|YP_004892167.1| - 0.0033 17.0 0.0 0.0084 15.7 0.0 1.6 2 0 0 2 2 2 1 MarR family HemN_C PF06969.11 gi|352681643|ref|YP_004892167.1| - 0.0038 17.2 0.0 0.69 10.0 0.0 2.4 2 0 0 2 2 2 1 HemN C-terminal domain HTH_27 PF13463.1 gi|352681643|ref|YP_004892167.1| - 0.0053 17.0 0.0 0.17 12.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain FaeA PF04703.7 gi|352681643|ref|YP_004892167.1| - 0.0062 16.6 0.1 0.013 15.6 0.1 1.5 1 0 0 1 1 1 1 FaeA-like protein HTH_34 PF13601.1 gi|352681643|ref|YP_004892167.1| - 0.019 14.9 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|352681643|ref|YP_004892167.1| - 0.021 14.9 0.0 0.14 12.2 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator HTH_28 PF13518.1 gi|352681643|ref|YP_004892167.1| - 0.041 13.8 0.1 0.14 12.1 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|352681643|ref|YP_004892167.1| - 0.054 13.4 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|352681643|ref|YP_004892167.1| - 0.057 13.5 0.0 0.64 10.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain PadR PF03551.9 gi|352681643|ref|YP_004892167.1| - 0.08 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.11 gi|352681643|ref|YP_004892167.1| - 0.11 12.1 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain DUF1641 PF07849.6 gi|352681646|ref|YP_004892170.1| - 2.6e-15 55.7 0.0 5e-15 54.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) DUF3562 PF12085.3 gi|352681646|ref|YP_004892170.1| - 0.0024 17.6 0.4 0.34 10.7 0.0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3562) Rcd1 PF04078.8 gi|352681646|ref|YP_004892170.1| - 0.031 13.1 0.1 0.038 12.8 0.1 1.1 1 0 0 1 1 1 0 Cell differentiation family, Rcd1-like Death PF00531.17 gi|352681646|ref|YP_004892170.1| - 0.12 12.1 0.2 0.57 9.9 0.2 2.1 2 0 0 2 2 2 0 Death domain PhoU PF01895.14 gi|352681646|ref|YP_004892170.1| - 0.14 12.6 2.1 0.21 12.0 1.4 1.3 1 0 0 1 1 1 0 PhoU domain Pyr_redox_2 PF07992.9 gi|352681647|ref|YP_004892171.1| - 5.4e-10 39.4 0.0 9e-10 38.7 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352681647|ref|YP_004892171.1| - 7e-05 22.6 0.1 0.029 14.1 0.1 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|352681647|ref|YP_004892171.1| - 0.00032 19.4 0.1 0.00051 18.7 0.1 1.3 1 0 0 1 1 1 1 Tryptophan halogenase DAO PF01266.19 gi|352681647|ref|YP_004892171.1| - 0.00043 19.3 0.9 0.0049 15.8 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|352681647|ref|YP_004892171.1| - 0.033 13.0 2.2 0.076 11.8 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|352681647|ref|YP_004892171.1| - 0.093 13.1 1.4 18 5.7 0.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|352681647|ref|YP_004892171.1| - 0.1 12.6 0.6 0.24 11.4 0.2 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DUF1122 PF06557.6 gi|352681648|ref|YP_004892172.1| - 1.1e-32 112.5 0.1 1.4e-32 112.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Pex2_Pex12 PF04757.9 gi|352681648|ref|YP_004892172.1| - 0.089 12.1 0.1 0.1 12.0 0.1 1.1 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region NIR_SIR PF01077.17 gi|352681650|ref|YP_004892174.1| - 1.5e-34 118.6 0.0 2.2e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|352681650|ref|YP_004892174.1| - 1.3e-10 40.7 0.0 2.2e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|352681650|ref|YP_004892174.1| - 0.00033 20.9 0.6 0.00094 19.5 0.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352681650|ref|YP_004892174.1| - 0.0047 16.4 5.6 0.95 9.1 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352681650|ref|YP_004892174.1| - 0.011 15.7 3.6 0.12 12.3 1.4 2.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681650|ref|YP_004892174.1| - 0.043 14.3 1.1 0.13 12.8 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|352681650|ref|YP_004892174.1| - 0.048 13.4 4.7 0.12 12.2 2.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681650|ref|YP_004892174.1| - 0.057 13.6 4.7 0.51 10.6 2.2 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|352681650|ref|YP_004892174.1| - 6.3 7.2 8.4 0.12 12.7 0.6 2.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain NIR_SIR PF01077.17 gi|352681651|ref|YP_004892175.1| - 1.5e-30 105.6 0.0 2.2e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|352681651|ref|YP_004892175.1| - 0.013 15.1 0.0 0.046 13.3 0.0 1.9 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_19 PF06902.6 gi|352681651|ref|YP_004892175.1| - 0.44 10.4 2.3 1.3 8.8 0.1 2.5 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster NIR_SIR PF01077.17 gi|352681652|ref|YP_004892176.1| - 2.1e-19 69.4 0.1 3.3e-19 68.7 0.1 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|352681652|ref|YP_004892176.1| - 3.4e-08 32.9 0.0 1.1e-07 31.3 0.0 1.9 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_19 PF06902.6 gi|352681652|ref|YP_004892176.1| - 0.27 11.0 1.1 1.3 8.8 0.1 2.4 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster NIR_SIR PF01077.17 gi|352681653|ref|YP_004892177.1| - 4.8e-33 113.7 0.0 7e-33 113.2 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|352681653|ref|YP_004892177.1| - 1.1e-09 37.7 0.0 2e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|352681653|ref|YP_004892177.1| - 7.4e-06 25.3 7.9 0.0018 17.7 2.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352681653|ref|YP_004892177.1| - 0.00017 21.5 0.2 0.0049 16.8 0.0 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352681653|ref|YP_004892177.1| - 0.00018 21.8 1.7 0.00018 21.8 1.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681653|ref|YP_004892177.1| - 0.00025 21.5 0.7 0.093 13.3 0.0 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|352681653|ref|YP_004892177.1| - 0.0003 21.1 2.0 0.16 12.3 0.3 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|352681653|ref|YP_004892177.1| - 0.016 15.9 1.6 4 8.2 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|352681653|ref|YP_004892177.1| - 0.016 15.4 5.3 0.11 12.7 3.5 2.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352681653|ref|YP_004892177.1| - 0.021 14.6 2.4 0.021 14.6 1.6 2.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681653|ref|YP_004892177.1| - 0.022 14.6 10.0 0.15 11.9 3.4 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352681653|ref|YP_004892177.1| - 0.025 14.4 4.3 0.025 14.4 3.0 2.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352681653|ref|YP_004892177.1| - 0.046 13.5 3.1 0.14 12.0 2.2 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352681653|ref|YP_004892177.1| - 4.9 7.6 7.6 4.1 7.9 3.9 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain TrmB PF01978.14 gi|352681655|ref|YP_004892179.1| - 0.011 15.4 0.0 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.11 gi|352681655|ref|YP_004892179.1| - 0.019 14.9 0.0 0.054 13.5 0.0 1.8 1 0 0 1 1 1 0 HemN C-terminal domain HTH_8 PF02954.14 gi|352681655|ref|YP_004892179.1| - 0.038 13.5 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Nitrate_red_gam PF02665.9 gi|352681656|ref|YP_004892180.1| - 4.6e-39 134.0 17.2 8.1e-36 123.4 8.1 2.1 2 0 0 2 2 2 2 Nitrate reductase gamma subunit CCG PF02754.11 gi|352681657|ref|YP_004892181.1| - 6.7e-11 42.0 1.9 1e-10 41.4 0.0 2.2 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_8 PF13183.1 gi|352681657|ref|YP_004892181.1| - 7.1e-11 41.9 1.9 7.1e-11 41.9 1.3 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352681657|ref|YP_004892181.1| - 3.1e-10 40.2 4.4 4.5e-10 39.7 1.6 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352681657|ref|YP_004892181.1| - 8.3e-09 35.7 15.9 7.3e-07 29.4 4.8 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681657|ref|YP_004892181.1| - 1.9e-07 31.2 7.0 0.0029 17.8 0.5 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352681657|ref|YP_004892181.1| - 2.6e-06 27.1 5.3 3.3e-05 23.5 4.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352681657|ref|YP_004892181.1| - 4e-06 27.1 6.1 0.015 15.7 0.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352681657|ref|YP_004892181.1| - 6.9e-06 25.9 13.2 0.01 16.1 1.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|352681657|ref|YP_004892181.1| - 5.7e-05 22.5 11.1 0.012 15.2 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352681657|ref|YP_004892181.1| - 8.8e-05 22.2 11.0 0.041 13.8 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352681657|ref|YP_004892181.1| - 0.00021 21.1 5.5 0.069 13.0 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681657|ref|YP_004892181.1| - 0.0048 16.7 15.1 0.093 12.6 2.5 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|352681657|ref|YP_004892181.1| - 0.022 15.4 14.6 0.061 14.0 7.0 3.2 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|352681657|ref|YP_004892181.1| - 0.025 15.1 15.6 0.5 11.0 1.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|352681657|ref|YP_004892181.1| - 0.45 11.1 3.9 5.7 7.5 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain DrsE PF02635.10 gi|352681658|ref|YP_004892182.1| - 1.1e-22 80.4 0.0 1.2e-22 80.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.12 gi|352681660|ref|YP_004892184.1| - 1.6e-16 59.6 0.0 1.7e-16 59.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Metallophos_2 PF12850.2 gi|352681661|ref|YP_004892185.1| - 3.6e-29 101.6 0.1 4.1e-29 101.4 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|352681661|ref|YP_004892185.1| - 0.00032 20.1 0.6 0.012 15.0 0.4 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FAD_binding_2 PF00890.19 gi|352681662|ref|YP_004892186.1| - 3.9e-12 45.7 0.2 1.4e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|352681662|ref|YP_004892186.1| - 1.4e-05 24.2 2.0 8.2e-05 21.6 0.2 2.3 1 1 0 2 2 2 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.15 gi|352681662|ref|YP_004892186.1| - 2.5e-05 24.1 0.0 4.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|352681662|ref|YP_004892186.1| - 0.0001 22.2 0.1 0.00025 20.9 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|352681662|ref|YP_004892186.1| - 0.0037 16.4 0.1 0.011 14.8 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|352681662|ref|YP_004892186.1| - 0.019 13.8 5.9 0.93 8.2 0.5 2.4 3 0 0 3 3 3 0 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|352681662|ref|YP_004892186.1| - 0.048 12.2 0.4 0.075 11.6 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase APS-reductase_C PF12139.3 gi|352681663|ref|YP_004892187.1| - 8.8e-27 93.0 0.0 1.2e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_10 PF13237.1 gi|352681663|ref|YP_004892187.1| - 2e-09 37.1 11.0 3.3e-09 36.4 7.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352681663|ref|YP_004892187.1| - 2.6e-09 37.2 12.6 4.7e-09 36.4 8.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681663|ref|YP_004892187.1| - 7.8e-09 35.0 14.6 1.1e-05 25.0 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|352681663|ref|YP_004892187.1| - 1.1e-08 34.3 13.5 5.8e-06 25.6 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352681663|ref|YP_004892187.1| - 1.2e-08 35.0 13.2 2.2e-08 34.2 9.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681663|ref|YP_004892187.1| - 6e-08 33.3 5.5 0.0023 18.6 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|352681663|ref|YP_004892187.1| - 2.5e-07 30.4 12.2 0.00036 20.6 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352681663|ref|YP_004892187.1| - 2.4e-06 27.1 13.3 0.00051 19.8 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|352681663|ref|YP_004892187.1| - 0.0014 18.9 18.5 0.025 15.1 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352681663|ref|YP_004892187.1| - 0.0015 18.5 13.7 0.0071 16.3 9.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681663|ref|YP_004892187.1| - 0.0021 17.8 12.8 0.012 15.4 8.9 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352681663|ref|YP_004892187.1| - 0.0028 17.9 14.8 0.23 11.8 1.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352681663|ref|YP_004892187.1| - 0.0071 16.7 15.5 0.18 12.2 3.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681663|ref|YP_004892187.1| - 0.088 13.3 1.9 0.088 13.3 1.3 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|352681663|ref|YP_004892187.1| - 0.27 11.6 11.3 1.8 8.9 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain ATP-sulfurylase PF01747.12 gi|352681665|ref|YP_004892189.1| - 2.7e-78 262.1 0.0 3.7e-78 261.7 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|352681665|ref|YP_004892189.1| - 1.7e-36 125.0 0.0 6.3e-36 123.1 0.0 1.8 2 0 0 2 2 2 1 PUA-like domain E1-E2_ATPase PF00122.15 gi|352681667|ref|YP_004892191.1| - 8.9e-54 181.9 0.5 1.8e-53 180.9 0.3 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|352681667|ref|YP_004892191.1| - 1.6e-47 162.6 2.5 4.3e-47 161.2 1.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|352681667|ref|YP_004892191.1| - 3.9e-16 58.9 0.0 2.1e-11 43.7 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|352681667|ref|YP_004892191.1| - 2.4e-14 53.9 0.0 6.5e-14 52.5 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|352681667|ref|YP_004892191.1| - 0.00052 19.6 0.0 0.069 12.7 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|352681667|ref|YP_004892191.1| - 0.13 12.1 0.0 0.49 10.3 0.0 2.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase YHS PF04945.8 gi|352681668|ref|YP_004892192.1| - 2.6e-18 65.5 1.2 2.9e-18 65.4 0.8 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|352681668|ref|YP_004892192.1| - 0.00012 22.1 2.1 0.00016 21.7 1.5 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|352681668|ref|YP_004892192.1| - 0.00014 21.4 1.2 0.00017 21.1 0.8 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ribosomal_L24e PF01246.15 gi|352681668|ref|YP_004892192.1| - 0.002 17.9 0.3 0.0022 17.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e DUF2116 PF09889.4 gi|352681668|ref|YP_004892192.1| - 0.04 13.7 1.2 0.096 12.5 0.5 1.7 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF3254 PF11630.3 gi|352681668|ref|YP_004892192.1| - 0.053 13.4 0.1 0.056 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3254) Chromo PF00385.19 gi|352681668|ref|YP_004892192.1| - 0.12 12.1 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Chromo (CHRromatin Organisation MOdifier) domain DUF2874 PF11396.3 gi|352681670|ref|YP_004892194.1| - 1.9e-05 24.5 0.9 0.011 15.7 0.9 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2874) APP_N PF02177.11 gi|352681670|ref|YP_004892194.1| - 0.13 12.1 0.2 0.24 11.3 0.2 1.4 1 0 0 1 1 1 0 Amyloid A4 N-terminal heparin-binding HTH_24 PF13412.1 gi|352681671|ref|YP_004892195.1| - 1.1e-09 37.5 0.2 1.7e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|352681671|ref|YP_004892195.1| - 6.1e-08 32.2 0.0 9.6e-08 31.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|352681671|ref|YP_004892195.1| - 7e-06 25.6 0.0 1.4e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|352681671|ref|YP_004892195.1| - 0.00014 21.3 0.7 0.00023 20.6 0.5 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|352681671|ref|YP_004892195.1| - 0.00035 20.3 0.1 0.0006 19.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|352681671|ref|YP_004892195.1| - 0.00056 19.9 0.2 0.0038 17.3 0.1 2.1 1 1 1 2 2 2 1 Transcriptional regulator TrmB PF01978.14 gi|352681671|ref|YP_004892195.1| - 0.0007 19.2 1.0 0.00079 19.0 0.1 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|352681671|ref|YP_004892195.1| - 0.0025 17.3 0.0 0.0053 16.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|352681671|ref|YP_004892195.1| - 0.0053 16.3 0.3 0.009 15.6 0.2 1.3 1 0 0 1 1 1 1 HTH domain Ftsk_gamma PF09397.5 gi|352681671|ref|YP_004892195.1| - 0.0077 15.9 0.2 0.014 15.1 0.2 1.3 1 0 0 1 1 1 1 Ftsk gamma domain Penicillinase_R PF03965.11 gi|352681671|ref|YP_004892195.1| - 0.036 14.1 0.2 0.06 13.4 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor Fe_dep_repress PF01325.14 gi|352681671|ref|YP_004892195.1| - 0.084 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|352681671|ref|YP_004892195.1| - 0.085 12.7 0.3 0.2 11.5 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FtsX PF02687.16 gi|352681671|ref|YP_004892195.1| - 0.089 12.5 1.7 0.13 12.0 1.2 1.2 1 0 0 1 1 1 0 FtsX-like permease family Cation_efflux PF01545.16 gi|352681671|ref|YP_004892195.1| - 0.09 11.8 0.0 0.098 11.7 0.0 1.1 1 0 0 1 1 1 0 Cation efflux family HTH_28 PF13518.1 gi|352681671|ref|YP_004892195.1| - 0.14 12.2 0.4 0.23 11.4 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.15 gi|352681671|ref|YP_004892195.1| - 2.6 7.6 4.4 6.9 6.2 0.1 2.8 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DrsE PF02635.10 gi|352681673|ref|YP_004892197.1| - 2.7e-06 27.4 0.0 3.2e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|352681673|ref|YP_004892197.1| - 0.0031 17.2 0.1 0.011 15.5 0.0 1.7 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family DUF3329 PF11808.3 gi|352681674|ref|YP_004892198.1| - 0.72 9.9 9.8 0.19 11.7 3.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3329) SecE PF00584.15 gi|352681674|ref|YP_004892198.1| - 4.9 6.8 8.4 9 5.9 5.8 1.5 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Zip PF02535.17 gi|352681675|ref|YP_004892199.1| - 4.3e-05 22.6 24.5 4.6e-05 22.5 5.7 2.8 1 1 1 3 3 3 2 ZIP Zinc transporter XPG_I PF00867.13 gi|352681676|ref|YP_004892200.1| - 1.2e-26 92.6 0.0 2e-26 91.8 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|352681676|ref|YP_004892200.1| - 5e-24 84.4 0.0 9.2e-24 83.6 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|352681676|ref|YP_004892200.1| - 3.8e-06 27.0 0.1 1.2e-05 25.5 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold PP28 PF10252.4 gi|352681676|ref|YP_004892200.1| - 0.0011 18.9 1.3 0.0026 17.7 0.9 1.6 1 0 0 1 1 1 1 Casein kinase substrate phosphoprotein PP28 DUF2458 PF10454.4 gi|352681676|ref|YP_004892200.1| - 0.091 12.6 0.1 0.24 11.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2458) EAP30 PF04157.11 gi|352681677|ref|YP_004892201.1| - 0.0016 17.6 0.2 0.0016 17.6 0.1 1.0 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_42 PF06224.7 gi|352681677|ref|YP_004892201.1| - 0.012 14.9 0.0 0.012 14.9 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|352681677|ref|YP_004892201.1| - 0.014 15.1 0.1 0.018 14.7 0.1 1.1 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain RNA_pol_Rpb1_3 PF04983.13 gi|352681677|ref|YP_004892201.1| - 0.069 12.8 0.1 0.082 12.6 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 3 HU-DNA_bdg PF14848.1 gi|352681677|ref|YP_004892201.1| - 0.093 12.4 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 DNA-binding domain Peptidase_S24 PF00717.18 gi|352681677|ref|YP_004892201.1| - 0.099 12.2 0.6 0.15 11.7 0.3 1.4 1 1 0 1 1 1 0 Peptidase S24-like AAA PF00004.24 gi|352681678|ref|YP_004892202.1| - 4e-100 331.2 0.0 1.9e-49 167.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|352681678|ref|YP_004892202.1| - 3.9e-28 97.2 0.7 3.2e-27 94.3 0.6 2.5 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|352681678|ref|YP_004892202.1| - 4.5e-16 58.5 0.0 1.9e-07 30.3 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|352681678|ref|YP_004892202.1| - 1.8e-15 57.2 0.8 6.4e-06 26.3 0.0 4.8 3 2 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|352681678|ref|YP_004892202.1| - 3.1e-13 50.0 0.0 1.3e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|352681678|ref|YP_004892202.1| - 4.8e-13 48.5 0.7 2.3e-05 23.3 0.0 3.4 3 0 0 3 3 3 2 TIP49 C-terminus AAA_17 PF13207.1 gi|352681678|ref|YP_004892202.1| - 4.6e-12 46.8 0.1 1.4e-05 25.9 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|352681678|ref|YP_004892202.1| - 7.3e-12 45.1 0.6 0.00034 20.3 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|352681678|ref|YP_004892202.1| - 8.1e-12 45.2 0.0 3.5e-05 23.6 0.0 3.1 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.12 gi|352681678|ref|YP_004892202.1| - 9.5e-12 44.3 0.2 2.3e-11 43.1 0.2 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|352681678|ref|YP_004892202.1| - 1.2e-11 44.9 0.0 4.7e-05 23.4 0.0 3.4 2 1 1 3 3 3 2 AAA ATPase domain AAA_14 PF13173.1 gi|352681678|ref|YP_004892202.1| - 7.7e-11 41.9 0.0 1.9e-05 24.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|352681678|ref|YP_004892202.1| - 2e-10 40.3 0.6 0.0013 18.1 0.0 3.5 4 0 0 4 4 4 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|352681678|ref|YP_004892202.1| - 1e-09 37.8 0.0 0.0002 20.4 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_28 PF13521.1 gi|352681678|ref|YP_004892202.1| - 7.4e-09 35.7 0.1 0.002 18.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain UFD1 PF03152.9 gi|352681678|ref|YP_004892202.1| - 1.9e-08 33.6 0.9 3.5e-08 32.7 0.2 1.7 2 0 0 2 2 1 1 Ubiquitin fusion degradation protein UFD1 AAA_19 PF13245.1 gi|352681678|ref|YP_004892202.1| - 4e-08 32.8 1.2 0.0078 15.9 0.0 2.8 2 0 0 2 2 2 2 Part of AAA domain AAA_18 PF13238.1 gi|352681678|ref|YP_004892202.1| - 4.9e-08 33.3 0.1 0.008 16.4 0.0 3.0 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|352681678|ref|YP_004892202.1| - 3.6e-07 30.3 0.0 0.0072 16.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|352681678|ref|YP_004892202.1| - 6.8e-07 28.6 0.8 0.033 13.3 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|352681678|ref|YP_004892202.1| - 3.5e-06 27.1 0.0 0.08 13.1 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.1 gi|352681678|ref|YP_004892202.1| - 4.8e-06 26.3 0.8 0.14 11.7 0.0 3.3 3 0 0 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|352681678|ref|YP_004892202.1| - 6e-06 25.8 0.2 0.12 11.8 0.0 3.4 3 1 0 3 3 3 2 Sigma-54 interaction domain PhoH PF02562.11 gi|352681678|ref|YP_004892202.1| - 8.5e-06 25.1 3.2 0.1 11.8 0.2 3.5 3 1 0 3 3 3 2 PhoH-like protein KaiC PF06745.8 gi|352681678|ref|YP_004892202.1| - 1.4e-05 24.3 1.5 0.17 11.0 0.0 3.5 2 1 1 3 3 3 2 KaiC Arch_ATPase PF01637.13 gi|352681678|ref|YP_004892202.1| - 1.5e-05 24.7 0.4 0.011 15.4 0.1 3.4 2 2 1 3 3 2 1 Archaeal ATPase AAA_25 PF13481.1 gi|352681678|ref|YP_004892202.1| - 1.8e-05 24.2 11.6 0.22 10.8 0.2 4.4 2 2 1 4 4 4 2 AAA domain DUF815 PF05673.8 gi|352681678|ref|YP_004892202.1| - 3e-05 23.0 0.0 0.19 10.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|352681678|ref|YP_004892202.1| - 4.8e-05 23.6 0.0 0.5 10.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|352681678|ref|YP_004892202.1| - 0.00014 21.6 0.4 1.6 8.4 0.0 3.7 4 0 0 4 4 3 1 NACHT domain Vps4_C PF09336.5 gi|352681678|ref|YP_004892202.1| - 0.00014 21.6 0.2 0.25 11.2 0.0 3.5 4 0 0 4 4 2 1 Vps4 C terminal oligomerisation domain T2SE PF00437.15 gi|352681678|ref|YP_004892202.1| - 0.00041 19.3 0.0 0.74 8.6 0.0 3.3 4 0 0 4 4 3 1 Type II/IV secretion system protein AAA_3 PF07726.6 gi|352681678|ref|YP_004892202.1| - 0.00047 19.7 0.0 1.1 8.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|352681678|ref|YP_004892202.1| - 0.00059 19.4 0.1 0.81 9.1 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain Parvo_NS1 PF01057.12 gi|352681678|ref|YP_004892202.1| - 0.00079 18.3 0.2 0.75 8.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|352681678|ref|YP_004892202.1| - 0.0012 17.9 0.0 0.5 9.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|352681678|ref|YP_004892202.1| - 0.0012 18.5 0.0 0.15 11.6 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein Viral_helicase1 PF01443.13 gi|352681678|ref|YP_004892202.1| - 0.0023 17.4 0.0 0.09 12.2 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase SKI PF01202.17 gi|352681678|ref|YP_004892202.1| - 0.0024 17.7 0.1 2.2 8.1 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.1 gi|352681678|ref|YP_004892202.1| - 0.0029 17.1 0.0 1.7 8.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|352681678|ref|YP_004892202.1| - 0.0031 17.1 0.1 2.6 7.6 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|352681678|ref|YP_004892202.1| - 0.0037 16.1 0.1 1.2 7.9 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain ResIII PF04851.10 gi|352681678|ref|YP_004892202.1| - 0.0039 17.0 0.0 2.3 8.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|352681678|ref|YP_004892202.1| - 0.0079 15.7 0.2 4.2 6.8 0.0 3.0 3 0 0 3 3 2 0 AAA domain NTPase_1 PF03266.10 gi|352681678|ref|YP_004892202.1| - 0.01 15.5 5.7 4.5 6.9 0.0 4.5 3 2 2 5 5 4 0 NTPase IPT PF01745.11 gi|352681678|ref|YP_004892202.1| - 0.013 14.7 0.3 2.1 7.4 0.1 2.5 2 0 0 2 2 2 0 Isopentenyl transferase PduV-EutP PF10662.4 gi|352681678|ref|YP_004892202.1| - 0.022 14.2 0.0 3.7 7.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Cytidylate_kin2 PF13189.1 gi|352681678|ref|YP_004892202.1| - 0.03 14.2 0.1 2.8 7.8 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_10 PF12846.2 gi|352681678|ref|YP_004892202.1| - 0.053 12.9 3.6 7.7 5.8 0.2 3.9 2 2 1 3 3 3 0 AAA-like domain cobW PF02492.14 gi|352681678|ref|YP_004892202.1| - 0.063 12.7 0.1 10 5.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|352681678|ref|YP_004892202.1| - 0.078 12.1 0.0 7.6 5.6 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_29 PF13555.1 gi|352681678|ref|YP_004892202.1| - 0.11 12.0 0.1 17 5.0 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AFG1_ATPase PF03969.11 gi|352681678|ref|YP_004892202.1| - 0.14 10.9 0.0 12 4.5 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase KAP_NTPase PF07693.9 gi|352681678|ref|YP_004892202.1| - 0.18 10.7 0.2 6.5 5.6 0.0 2.9 3 1 1 4 4 3 0 KAP family P-loop domain CENP-X PF09415.5 gi|352681678|ref|YP_004892202.1| - 1.4 8.7 4.3 1.2 9.0 0.1 2.8 3 0 0 3 3 2 0 CENP-S associating Centromere protein X EF1_GNE PF00736.14 gi|352681679|ref|YP_004892203.1| - 9.1e-18 63.7 0.1 9.8e-18 63.6 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3970 PF13113.1 gi|352681679|ref|YP_004892203.1| - 0.045 13.4 1.4 0.33 10.6 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3970) DUF1610 PF07754.6 gi|352681680|ref|YP_004892204.1| - 1.3e-16 60.3 1.1 6e-10 39.0 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc_ribbon_4 PF13717.1 gi|352681680|ref|YP_004892204.1| - 0.0003 20.4 1.2 0.00039 20.0 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|352681680|ref|YP_004892204.1| - 0.00037 20.0 1.2 0.00049 19.6 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352681680|ref|YP_004892204.1| - 0.00062 18.8 3.3 0.026 13.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|352681680|ref|YP_004892204.1| - 0.00071 18.8 2.9 0.054 12.8 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|352681680|ref|YP_004892204.1| - 0.00081 19.3 2.0 0.032 14.2 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.1 gi|352681680|ref|YP_004892204.1| - 0.0012 19.0 0.8 1.1 9.6 0.0 2.2 2 0 0 2 2 2 2 Zinc-finger double domain DUF2296 PF10058.4 gi|352681680|ref|YP_004892204.1| - 0.0018 17.9 0.6 0.99 9.1 0.0 2.1 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|352681680|ref|YP_004892204.1| - 0.0022 17.7 2.8 0.0056 16.4 2.0 1.6 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|352681680|ref|YP_004892204.1| - 0.0023 17.7 1.2 1.3 8.9 0.1 2.3 2 0 0 2 2 2 2 Rubredoxin zinc_ribbon_2 PF13240.1 gi|352681680|ref|YP_004892204.1| - 0.0044 16.4 3.7 0.13 11.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain tRNA-synt_1f PF01921.13 gi|352681680|ref|YP_004892204.1| - 0.0068 15.1 0.0 0.0068 15.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) Elf1 PF05129.8 gi|352681680|ref|YP_004892204.1| - 0.015 14.9 0.7 0.028 14.1 0.5 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2 PF00096.21 gi|352681680|ref|YP_004892204.1| - 0.019 15.3 3.8 0.94 9.9 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type PhnA_Zn_Ribbon PF08274.7 gi|352681680|ref|YP_004892204.1| - 0.02 14.6 0.3 0.94 9.3 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-CHY PF05495.7 gi|352681680|ref|YP_004892204.1| - 0.02 15.0 0.0 0.023 14.8 0.0 1.1 1 0 0 1 1 1 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|352681680|ref|YP_004892204.1| - 0.024 14.5 2.2 0.092 12.7 1.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|352681680|ref|YP_004892204.1| - 0.036 13.5 0.5 0.95 9.0 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|352681680|ref|YP_004892204.1| - 0.036 13.8 1.1 0.13 12.1 0.8 1.8 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|352681680|ref|YP_004892204.1| - 0.037 13.7 1.7 0.15 11.7 1.2 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|352681680|ref|YP_004892204.1| - 0.037 13.8 0.1 0.042 13.7 0.1 1.1 1 0 0 1 1 1 0 IBR domain zf-Mss51 PF13824.1 gi|352681680|ref|YP_004892204.1| - 0.039 13.8 2.9 1.4 8.8 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_recom PF13408.1 gi|352681680|ref|YP_004892204.1| - 0.051 13.8 1.6 0.077 13.2 1.1 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.14 gi|352681680|ref|YP_004892204.1| - 0.068 12.6 1.9 1.2 8.6 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prim_Zn_Ribbon PF08273.7 gi|352681680|ref|YP_004892204.1| - 0.078 13.0 1.6 6.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Sgf11 PF08209.6 gi|352681680|ref|YP_004892204.1| - 0.082 12.2 2.5 0.3 10.4 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) CpXC PF14353.1 gi|352681680|ref|YP_004892204.1| - 0.083 12.8 0.4 2.2 8.2 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zf-C2H2_4 PF13894.1 gi|352681680|ref|YP_004892204.1| - 0.087 13.1 3.3 4.7 7.7 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger HypA PF01155.14 gi|352681680|ref|YP_004892204.1| - 0.094 12.4 0.1 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ogr_Delta PF04606.7 gi|352681680|ref|YP_004892204.1| - 0.11 12.2 3.4 0.27 10.9 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|352681680|ref|YP_004892204.1| - 0.11 12.5 0.1 2 8.5 0.0 2.1 2 0 0 2 2 2 0 zinc-finger C1_3 PF07649.7 gi|352681680|ref|YP_004892204.1| - 0.12 12.4 0.7 1.1 9.3 0.1 2.1 2 0 0 2 2 2 0 C1-like domain DUF329 PF03884.9 gi|352681680|ref|YP_004892204.1| - 0.13 11.8 0.8 3.7 7.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-FPG_IleRS PF06827.9 gi|352681680|ref|YP_004892204.1| - 0.13 11.8 1.4 12 5.6 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-AN1 PF01428.11 gi|352681680|ref|YP_004892204.1| - 0.15 11.9 0.6 14 5.6 0.0 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger UPF0547 PF10571.4 gi|352681680|ref|YP_004892204.1| - 0.15 11.7 6.1 1.6 8.4 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ADK_lid PF05191.9 gi|352681680|ref|YP_004892204.1| - 0.15 11.7 1.0 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DNA_ligase_ZBD PF03119.11 gi|352681680|ref|YP_004892204.1| - 0.16 11.7 4.1 4.9 6.9 0.5 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Cys_rich_CPCC PF14206.1 gi|352681680|ref|YP_004892204.1| - 0.16 11.5 2.4 0.4 10.2 1.7 1.6 1 1 0 1 1 1 0 Cysteine-rich CPCC TFIIS_C PF01096.13 gi|352681680|ref|YP_004892204.1| - 0.17 11.5 1.3 7.1 6.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-HIT PF04438.11 gi|352681680|ref|YP_004892204.1| - 0.17 11.5 1.8 4.9 6.8 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger Lar_restr_allev PF14354.1 gi|352681680|ref|YP_004892204.1| - 0.18 12.0 2.8 0.92 9.8 1.9 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Di19 PF05605.7 gi|352681680|ref|YP_004892204.1| - 0.24 11.5 2.0 11 6.1 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF3449 PF11931.3 gi|352681680|ref|YP_004892204.1| - 0.25 10.8 0.8 0.6 9.5 0.1 1.7 1 1 0 2 2 2 0 Domain of unknown function (DUF3449) zf-RING_5 PF14634.1 gi|352681680|ref|YP_004892204.1| - 0.25 11.0 1.5 0.64 9.7 1.1 1.6 1 1 1 2 2 2 0 zinc-RING finger domain DUF3797 PF12677.2 gi|352681680|ref|YP_004892204.1| - 0.32 10.6 2.0 7.8 6.2 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) NOB1_Zn_bind PF08772.6 gi|352681680|ref|YP_004892204.1| - 0.35 10.7 1.9 0.36 10.6 0.1 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-tcix PF14952.1 gi|352681680|ref|YP_004892204.1| - 5.5 6.3 6.9 12 5.3 0.7 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Peptidase_S9 PF00326.16 gi|352681681|ref|YP_004892205.1| - 2.2e-40 138.1 0.0 3.1e-40 137.6 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|352681681|ref|YP_004892205.1| - 2.2e-14 53.9 0.6 2.2e-14 53.9 0.4 2.5 3 1 0 3 3 3 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|352681681|ref|YP_004892205.1| - 3.4e-14 52.8 0.0 7.9e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|352681681|ref|YP_004892205.1| - 2.8e-10 40.0 0.0 1.6e-07 31.0 0.0 2.5 2 1 1 3 3 3 2 X-Pro dipeptidyl-peptidase (S15 family) LIP PF03583.9 gi|352681681|ref|YP_004892205.1| - 1.1e-05 24.7 0.0 0.025 13.8 0.0 2.2 2 0 0 2 2 2 2 Secretory lipase PD40 PF07676.7 gi|352681681|ref|YP_004892205.1| - 0.00035 20.1 8.0 0.096 12.3 0.2 4.5 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat Abhydrolase_3 PF07859.8 gi|352681681|ref|YP_004892205.1| - 0.00044 19.8 0.1 0.005 16.4 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.13 gi|352681681|ref|YP_004892205.1| - 0.00074 18.8 0.0 0.0037 16.5 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Esterase PF00756.15 gi|352681681|ref|YP_004892205.1| - 0.0029 17.0 0.0 0.0068 15.8 0.0 1.6 1 0 0 1 1 1 1 Putative esterase Abhydrolase_1 PF00561.15 gi|352681681|ref|YP_004892205.1| - 0.0032 17.0 0.0 0.021 14.3 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|352681681|ref|YP_004892205.1| - 0.0036 17.1 0.0 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_2 PF02230.11 gi|352681681|ref|YP_004892205.1| - 0.033 13.6 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DUF2920 PF11144.3 gi|352681681|ref|YP_004892205.1| - 0.09 11.7 0.0 1.8 7.5 0.0 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2920) PhoPQ_related PF10142.4 gi|352681681|ref|YP_004892205.1| - 0.2 10.0 0.0 0.31 9.4 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein Spermine_synth PF01564.12 gi|352681682|ref|YP_004892206.1| - 6.2e-59 198.8 0.0 8.4e-59 198.4 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|352681682|ref|YP_004892206.1| - 3.4e-08 33.5 0.1 6.7e-08 32.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352681682|ref|YP_004892206.1| - 2.8e-07 31.0 0.1 4.5e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352681682|ref|YP_004892206.1| - 6.8e-06 25.7 0.0 8.8e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352681682|ref|YP_004892206.1| - 2e-05 25.0 0.0 5.2e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|352681682|ref|YP_004892206.1| - 7.3e-05 22.2 0.1 0.00016 21.1 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|352681682|ref|YP_004892206.1| - 0.00044 20.5 0.0 0.0021 18.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352681682|ref|YP_004892206.1| - 0.0069 16.8 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352681682|ref|YP_004892206.1| - 0.031 14.0 0.0 0.1 12.2 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_30 PF05430.6 gi|352681682|ref|YP_004892206.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|352681682|ref|YP_004892206.1| - 0.095 12.0 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain HTH_3 PF01381.17 gi|352681683|ref|YP_004892207.1| - 0.00065 19.4 0.1 0.0024 17.6 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix Rubrerythrin PF02915.12 gi|352681683|ref|YP_004892207.1| - 0.0012 19.2 2.2 0.0086 16.4 0.6 2.4 2 1 0 2 2 2 1 Rubrerythrin Phenol_Hydrox PF02332.13 gi|352681683|ref|YP_004892207.1| - 0.0039 16.5 0.0 0.012 14.9 0.0 1.7 1 1 1 2 2 2 1 Methane/Phenol/Toluene Hydroxylase Ferritin_2 PF13668.1 gi|352681683|ref|YP_004892207.1| - 0.013 15.4 0.1 3.7 7.4 0.0 2.5 1 1 0 2 2 2 0 Ferritin-like domain HTH_1 PF00126.22 gi|352681683|ref|YP_004892207.1| - 0.015 14.9 0.5 0.05 13.3 0.4 1.9 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.1 gi|352681683|ref|YP_004892207.1| - 0.025 14.7 1.0 0.025 14.7 0.7 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|352681683|ref|YP_004892207.1| - 0.03 14.5 0.0 0.069 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2452 PF10504.4 gi|352681683|ref|YP_004892207.1| - 0.031 13.5 0.1 0.058 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) HTH_37 PF13744.1 gi|352681683|ref|YP_004892207.1| - 0.034 13.9 0.0 0.25 11.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|352681683|ref|YP_004892207.1| - 0.036 13.7 0.3 0.097 12.3 0.2 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|352681683|ref|YP_004892207.1| - 0.085 12.8 0.4 0.42 10.6 0.1 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain RIO1 PF01163.17 gi|352681683|ref|YP_004892207.1| - 0.091 12.1 0.1 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 RIO1 family MarR_2 PF12802.2 gi|352681683|ref|YP_004892207.1| - 1.2 8.8 3.8 0.48 10.1 0.2 2.2 3 0 0 3 3 3 0 MarR family ATP-synt_ab PF00006.20 gi|352681685|ref|YP_004892209.1| - 3.9e-60 203.0 0.0 5e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|352681685|ref|YP_004892209.1| - 3.2e-09 37.2 0.0 5.3e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|352681685|ref|YP_004892209.1| - 9.1e-08 32.2 1.7 9.1e-08 32.2 1.2 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RHH_1 PF01402.16 gi|352681686|ref|YP_004892210.1| - 2.4e-10 39.8 0.3 3.1e-10 39.5 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|352681686|ref|YP_004892210.1| - 0.023 14.8 0.0 0.024 14.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|352681686|ref|YP_004892210.1| - 0.15 11.9 0.3 0.32 10.8 0.2 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) tRNA-synt_2d PF01409.15 gi|352681687|ref|YP_004892211.1| - 6.6e-79 264.5 0.0 8.5e-79 264.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|352681687|ref|YP_004892211.1| - 3.7e-09 35.7 1.8 0.00061 18.6 0.0 3.2 3 0 0 3 3 3 3 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|352681687|ref|YP_004892211.1| - 0.0012 18.6 0.1 0.0087 15.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|352681687|ref|YP_004892211.1| - 0.015 15.0 1.8 0.051 13.3 0.2 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|352681687|ref|YP_004892211.1| - 0.04 13.7 1.4 0.14 11.9 0.0 2.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain VASP_tetra PF08776.6 gi|352681688|ref|YP_004892212.1| - 0.081 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 VASP tetramerisation domain RimK PF08443.6 gi|352681689|ref|YP_004892213.1| - 1.3e-54 184.5 0.0 1.6e-54 184.2 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|352681689|ref|YP_004892213.1| - 1.4e-20 73.7 0.0 2e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|352681689|ref|YP_004892213.1| - 1.1e-14 54.0 0.0 1.5e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|352681689|ref|YP_004892213.1| - 2.2e-13 49.6 0.0 3.3e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|352681689|ref|YP_004892213.1| - 1.1e-12 48.1 0.0 1.5e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|352681689|ref|YP_004892213.1| - 3.4e-08 33.0 0.0 1.1e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|352681689|ref|YP_004892213.1| - 0.00077 18.7 0.0 0.0047 16.1 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|352681689|ref|YP_004892213.1| - 0.0034 16.7 0.0 0.0051 16.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|352681689|ref|YP_004892213.1| - 0.0069 15.7 0.0 0.03 13.7 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|352681689|ref|YP_004892213.1| - 0.028 13.5 0.0 0.059 12.4 0.0 1.5 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp TTL PF03133.10 gi|352681689|ref|YP_004892213.1| - 0.031 13.2 0.0 0.16 10.8 0.0 1.8 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family Lyase_1 PF00206.15 gi|352681690|ref|YP_004892214.1| - 8.1e-40 136.9 0.0 1.2e-39 136.4 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|352681690|ref|YP_004892214.1| - 0.00031 20.7 0.0 0.0011 19.0 0.0 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal CPSase_sm_chain PF00988.17 gi|352681691|ref|YP_004892215.1| - 5.9e-51 171.3 0.1 8.3e-51 170.9 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|352681691|ref|YP_004892215.1| - 6.8e-38 130.0 0.0 9e-38 129.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|352681691|ref|YP_004892215.1| - 9.2e-12 44.8 0.1 8.4e-10 38.4 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 DUF3905 PF13045.1 gi|352681691|ref|YP_004892215.1| - 0.0092 15.7 0.0 0.023 14.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3905) AAA_25 PF13481.1 gi|352681693|ref|YP_004892217.1| - 5e-10 39.1 0.0 1e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352681693|ref|YP_004892217.1| - 5.4e-07 29.8 0.0 1.1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681693|ref|YP_004892217.1| - 2.6e-05 24.3 0.0 7.3e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain GvpD PF07088.6 gi|352681693|ref|YP_004892217.1| - 5.6e-05 21.6 0.0 0.12 10.6 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein KaiC PF06745.8 gi|352681693|ref|YP_004892217.1| - 0.00029 20.0 0.0 0.42 9.6 0.0 2.7 1 1 1 2 2 2 2 KaiC AAA_24 PF13479.1 gi|352681693|ref|YP_004892217.1| - 0.00054 19.6 0.0 0.0016 18.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352681693|ref|YP_004892217.1| - 0.0015 18.2 0.1 0.0055 16.4 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|352681693|ref|YP_004892217.1| - 0.0027 18.5 0.0 0.0068 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|352681693|ref|YP_004892217.1| - 0.0028 17.8 0.0 0.0056 16.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA12 PF10443.4 gi|352681693|ref|YP_004892217.1| - 0.006 15.1 0.0 0.012 14.1 0.0 1.4 1 0 0 1 1 1 1 RNA12 protein AAA_33 PF13671.1 gi|352681693|ref|YP_004892217.1| - 0.01 15.6 0.0 0.028 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|352681693|ref|YP_004892217.1| - 0.014 15.4 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|352681693|ref|YP_004892217.1| - 0.015 14.9 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|352681693|ref|YP_004892217.1| - 0.034 14.4 0.0 0.055 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|352681693|ref|YP_004892217.1| - 0.046 12.8 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.12 gi|352681693|ref|YP_004892217.1| - 0.049 13.1 0.0 0.64 9.5 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_11 PF13086.1 gi|352681693|ref|YP_004892217.1| - 0.063 12.8 0.0 0.088 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|352681693|ref|YP_004892217.1| - 0.072 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|352681693|ref|YP_004892217.1| - 0.089 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain CobU PF02283.11 gi|352681693|ref|YP_004892217.1| - 0.089 12.1 0.0 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_5 PF07728.9 gi|352681693|ref|YP_004892217.1| - 0.1 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zot PF05707.7 gi|352681693|ref|YP_004892217.1| - 0.13 11.6 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_29 PF13555.1 gi|352681693|ref|YP_004892217.1| - 0.14 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DFP PF04127.10 gi|352681695|ref|YP_004892219.1| - 3.7e-46 157.0 0.0 1.9e-44 151.4 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|352681695|ref|YP_004892219.1| - 6.4e-25 87.2 0.7 1.2e-24 86.4 0.5 1.5 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|352681695|ref|YP_004892219.1| - 0.092 12.7 1.9 1.5 8.7 0.0 2.8 2 1 1 3 3 3 0 NADH(P)-binding Glyco_trans_4_4 PF13579.1 gi|352681695|ref|YP_004892219.1| - 1.2 9.2 13.1 4.4 7.4 1.2 3.4 2 2 0 2 2 2 0 Glycosyl transferase 4-like domain zinc_ribbon_2 PF13240.1 gi|352681696|ref|YP_004892220.1| - 0.00015 21.1 0.4 0.19 11.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352681696|ref|YP_004892220.1| - 0.00032 19.7 3.8 0.0014 17.7 2.7 1.8 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|352681696|ref|YP_004892220.1| - 0.00037 20.2 0.2 0.0005 19.8 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|352681696|ref|YP_004892220.1| - 0.00056 19.5 0.1 0.00087 18.8 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|352681696|ref|YP_004892220.1| - 0.00066 19.4 3.3 0.033 13.9 3.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|352681696|ref|YP_004892220.1| - 0.00081 19.1 0.2 0.77 9.6 0.1 2.2 1 1 1 2 2 2 2 Cysteine-rich CPXCG CpXC PF14353.1 gi|352681696|ref|YP_004892220.1| - 0.00087 19.2 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 1 CpXC protein Sgf11 PF08209.6 gi|352681696|ref|YP_004892220.1| - 0.0011 18.2 1.1 0.25 10.6 0.1 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) DUF1610 PF07754.6 gi|352681696|ref|YP_004892220.1| - 0.0011 19.0 1.2 0.82 9.8 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-LITAF-like PF10601.4 gi|352681696|ref|YP_004892220.1| - 0.002 17.9 1.1 1.1 9.2 0.0 2.1 1 1 1 2 2 2 2 LITAF-like zinc ribbon domain Lar_restr_allev PF14354.1 gi|352681696|ref|YP_004892220.1| - 0.0025 18.0 2.4 0.025 14.8 1.7 2.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|352681696|ref|YP_004892220.1| - 0.0039 16.4 1.2 0.0097 15.2 0.9 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|352681696|ref|YP_004892220.1| - 0.0046 16.9 3.2 0.41 10.7 0.1 2.2 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FYDLN_acid PF09538.5 gi|352681696|ref|YP_004892220.1| - 0.0052 17.3 0.5 0.48 11.0 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) FYVE PF01363.16 gi|352681696|ref|YP_004892220.1| - 0.0091 15.8 0.1 0.0095 15.8 0.1 1.2 1 0 0 1 1 1 1 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|352681696|ref|YP_004892220.1| - 0.0098 16.1 1.3 1.8 9.0 0.0 2.2 1 1 1 2 2 2 1 C2H2-type zinc finger NOB1_Zn_bind PF08772.6 gi|352681696|ref|YP_004892220.1| - 0.011 15.5 0.1 0.36 10.6 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2296 PF10058.4 gi|352681696|ref|YP_004892220.1| - 0.013 15.2 0.8 0.023 14.4 0.5 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|352681696|ref|YP_004892220.1| - 0.015 15.2 2.5 0.67 9.9 0.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|352681696|ref|YP_004892220.1| - 0.015 15.1 1.2 2.3 8.2 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-H2C2_2 PF13465.1 gi|352681696|ref|YP_004892220.1| - 0.018 15.3 1.6 1.9 8.9 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C3HC4_3 PF13920.1 gi|352681696|ref|YP_004892220.1| - 0.032 13.9 0.8 0.047 13.3 0.5 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC_2 PF13913.1 gi|352681696|ref|YP_004892220.1| - 0.034 13.8 4.5 0.29 10.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type UPF0547 PF10571.4 gi|352681696|ref|YP_004892220.1| - 0.037 13.7 1.3 6.8 6.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-CHCC PF10276.4 gi|352681696|ref|YP_004892220.1| - 0.037 13.8 2.2 0.085 12.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger domain zf-C4_Topoisom PF01396.14 gi|352681696|ref|YP_004892220.1| - 0.048 13.1 0.7 4.3 6.9 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-Di19 PF05605.7 gi|352681696|ref|YP_004892220.1| - 0.049 13.7 3.9 2 8.6 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Nudix_N_2 PF14803.1 gi|352681696|ref|YP_004892220.1| - 0.059 13.0 5.5 0.46 10.2 3.8 2.1 1 1 0 1 1 1 0 Nudix N-terminal DUF1936 PF09151.5 gi|352681696|ref|YP_004892220.1| - 0.061 12.8 4.4 2.7 7.5 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) DUF2614 PF11023.3 gi|352681696|ref|YP_004892220.1| - 0.067 12.9 0.1 0.07 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) Zn_Tnp_IS91 PF14319.1 gi|352681696|ref|YP_004892220.1| - 0.078 12.4 0.2 0.096 12.1 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF329 PF03884.9 gi|352681696|ref|YP_004892220.1| - 0.16 11.5 0.8 0.31 10.6 0.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-RING_5 PF14634.1 gi|352681696|ref|YP_004892220.1| - 0.18 11.5 1.4 0.28 10.9 1.0 1.4 1 1 0 1 1 1 0 zinc-RING finger domain ADK_lid PF05191.9 gi|352681696|ref|YP_004892220.1| - 0.2 11.3 2.5 8.9 6.0 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Molybdop_Fe4S4 PF04879.11 gi|352681696|ref|YP_004892220.1| - 0.21 11.4 2.0 8.3 6.3 0.1 2.2 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain Rubredoxin PF00301.15 gi|352681696|ref|YP_004892220.1| - 0.25 11.2 1.4 13 5.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.7 gi|352681696|ref|YP_004892220.1| - 0.27 11.0 3.1 0.59 9.9 2.1 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-tcix PF14952.1 gi|352681696|ref|YP_004892220.1| - 0.28 10.5 4.5 0.42 9.9 0.1 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2H2 PF00096.21 gi|352681696|ref|YP_004892220.1| - 0.3 11.5 5.3 4 7.9 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type Prok-RING_1 PF14446.1 gi|352681696|ref|YP_004892220.1| - 0.33 10.7 3.3 2 8.2 0.3 2.0 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 Ribosomal_L32p PF01783.18 gi|352681696|ref|YP_004892220.1| - 0.42 10.8 2.8 2.1 8.6 1.9 2.0 1 1 0 1 1 1 0 Ribosomal L32p protein family TerY-C PF15616.1 gi|352681696|ref|YP_004892220.1| - 0.47 10.3 1.9 10 6.0 0.1 1.9 1 1 1 2 2 2 0 TerY-C metal binding domain zf-C2H2_3 PF13878.1 gi|352681696|ref|YP_004892220.1| - 0.51 9.9 3.1 1.1 8.8 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF2225 PF09986.4 gi|352681696|ref|YP_004892220.1| - 0.55 9.6 2.5 3 7.2 1.7 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-RING_3 PF14369.1 gi|352681696|ref|YP_004892220.1| - 0.86 9.6 4.6 6.5 6.8 0.2 2.2 1 1 1 2 2 2 0 zinc-finger DUF164 PF02591.10 gi|352681696|ref|YP_004892220.1| - 1.2 8.9 6.5 0.96 9.3 0.2 2.5 2 1 1 3 3 2 0 Putative zinc ribbon domain zf-Mss51 PF13824.1 gi|352681696|ref|YP_004892220.1| - 1.9 8.3 4.5 12 5.8 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 GTP_EFTU PF00009.22 gi|352681697|ref|YP_004892221.1| - 1.4e-55 187.6 0.0 2e-55 187.1 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|352681697|ref|YP_004892221.1| - 1.4e-32 111.7 0.0 4.2e-32 110.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|352681697|ref|YP_004892221.1| - 7e-24 83.4 0.1 1.4e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|352681697|ref|YP_004892221.1| - 1.1e-19 70.0 0.0 3.1e-19 68.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|352681697|ref|YP_004892221.1| - 3.3e-16 59.1 0.2 7.5e-16 58.0 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|352681697|ref|YP_004892221.1| - 0.031 14.2 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase 3HCDH_N PF02737.13 gi|352681697|ref|YP_004892221.1| - 0.075 12.6 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Linocin_M18 PF04454.7 gi|352681698|ref|YP_004892222.1| - 3.4e-48 163.7 0.0 5.3e-48 163.1 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|352681698|ref|YP_004892222.1| - 1.3e-09 38.5 0.1 2.1e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|352681698|ref|YP_004892222.1| - 0.00058 19.6 0.0 0.00099 18.8 0.0 1.4 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|352681698|ref|YP_004892222.1| - 0.0088 16.2 1.4 0.016 15.4 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DUF2666 PF10869.3 gi|352681698|ref|YP_004892222.1| - 0.062 13.3 0.3 0.15 12.0 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2666) GHMP_kinases_N PF00288.21 gi|352681700|ref|YP_004892224.1| - 3e-13 49.6 3.1 3e-13 49.6 2.2 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|352681700|ref|YP_004892224.1| - 5e-11 42.6 0.4 5e-11 42.6 0.3 2.3 3 0 0 3 3 3 1 GHMP kinases C terminal Y_phosphatase3C PF13348.1 gi|352681701|ref|YP_004892225.1| - 0.0007 19.6 1.0 0.0019 18.2 0.1 2.3 2 2 0 2 2 2 1 Tyrosine phosphatase family C-terminal region DUF4358 PF14270.1 gi|352681701|ref|YP_004892225.1| - 0.14 12.0 0.2 0.28 11.0 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) Band_7_1 PF13421.1 gi|352681702|ref|YP_004892226.1| - 1.1e-12 47.9 0.0 1.3e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 SPFH domain-Band 7 family ATP_synt_I PF03899.10 gi|352681703|ref|YP_004892227.1| - 0.067 13.3 3.8 0.073 13.2 2.6 1.1 1 0 0 1 1 1 0 ATP synthase I chain PAC2 PF09754.4 gi|352681704|ref|YP_004892228.1| - 1.8e-41 142.4 0.3 2.2e-41 142.1 0.2 1.1 1 0 0 1 1 1 1 PAC2 family Peripla_BP_6 PF13458.1 gi|352681705|ref|YP_004892229.1| - 7.3e-52 176.8 8.5 9.1e-52 176.5 5.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|352681705|ref|YP_004892229.1| - 9e-27 93.7 1.2 1.3e-26 93.1 0.8 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|352681705|ref|YP_004892229.1| - 2.3e-19 69.4 0.8 2.6e-12 46.2 0.2 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain ODV-E18 PF10717.4 gi|352681705|ref|YP_004892229.1| - 0.0069 15.7 0.2 0.013 14.9 0.1 1.4 1 0 0 1 1 1 1 Occlusion-derived virus envelope protein ODV-E18 Peripla_BP_4 PF13407.1 gi|352681705|ref|YP_004892229.1| - 0.0084 15.4 0.4 1.2 8.3 0.0 2.6 2 0 0 2 2 2 1 Periplasmic binding protein domain SecD-TM1 PF13721.1 gi|352681705|ref|YP_004892229.1| - 0.024 14.8 1.0 0.58 10.4 0.0 2.8 3 0 0 3 3 3 0 SecD export protein N-terminal TM region XG_FTase PF03254.8 gi|352681705|ref|YP_004892229.1| - 0.059 11.8 0.0 0.087 11.3 0.0 1.1 1 0 0 1 1 1 0 Xyloglucan fucosyltransferase Shisa PF13908.1 gi|352681705|ref|YP_004892229.1| - 0.11 12.6 0.4 0.23 11.6 0.3 1.5 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator SpoIIIAH PF12685.2 gi|352681705|ref|YP_004892229.1| - 0.14 11.6 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein BPD_transp_2 PF02653.11 gi|352681706|ref|YP_004892230.1| - 1.9e-31 109.0 45.2 2.2e-31 108.7 31.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|352681707|ref|YP_004892231.1| - 7.9e-32 110.2 43.1 9.8e-32 109.9 29.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|352681708|ref|YP_004892232.1| - 1.3e-27 96.7 0.0 1.7e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681708|ref|YP_004892232.1| - 1.6e-09 38.1 0.1 2.7e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|352681708|ref|YP_004892232.1| - 8.4e-07 29.1 0.1 0.051 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|352681708|ref|YP_004892232.1| - 3.5e-06 26.5 0.4 7.3e-06 25.5 0.3 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|352681708|ref|YP_004892232.1| - 1.6e-05 24.2 0.3 0.005 16.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|352681708|ref|YP_004892232.1| - 1.6e-05 24.4 0.0 0.037 13.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|352681708|ref|YP_004892232.1| - 5.2e-05 22.6 0.0 9.5e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|352681708|ref|YP_004892232.1| - 0.0002 21.7 0.0 0.0003 21.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681708|ref|YP_004892232.1| - 0.00065 19.7 0.0 0.0017 18.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|352681708|ref|YP_004892232.1| - 0.00082 19.0 0.0 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain ABC_ATPase PF09818.4 gi|352681708|ref|YP_004892232.1| - 0.0009 17.9 2.8 0.087 11.3 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|352681708|ref|YP_004892232.1| - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|352681708|ref|YP_004892232.1| - 0.0022 17.5 0.0 0.0044 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|352681708|ref|YP_004892232.1| - 0.0027 17.6 0.0 0.081 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|352681708|ref|YP_004892232.1| - 0.0051 15.7 0.1 0.043 12.7 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|352681708|ref|YP_004892232.1| - 0.01 16.6 0.0 0.033 15.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|352681708|ref|YP_004892232.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|352681708|ref|YP_004892232.1| - 0.011 15.1 0.1 0.11 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|352681708|ref|YP_004892232.1| - 0.013 14.6 0.1 0.038 13.1 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|352681708|ref|YP_004892232.1| - 0.016 14.0 0.1 0.11 11.3 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.7 gi|352681708|ref|YP_004892232.1| - 0.021 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|352681708|ref|YP_004892232.1| - 0.027 14.3 0.0 0.094 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|352681708|ref|YP_004892232.1| - 0.029 13.8 0.0 0.058 12.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.14 gi|352681708|ref|YP_004892232.1| - 0.051 13.0 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|352681708|ref|YP_004892232.1| - 0.12 11.7 0.5 0.37 10.2 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|352681708|ref|YP_004892232.1| - 0.13 11.7 0.1 3.6 6.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF3584 PF12128.3 gi|352681708|ref|YP_004892232.1| - 0.14 9.4 0.1 0.17 9.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_28 PF13521.1 gi|352681708|ref|YP_004892232.1| - 0.15 12.0 0.0 0.37 10.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA PF00004.24 gi|352681708|ref|YP_004892232.1| - 0.15 12.2 0.1 1.9 8.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|352681709|ref|YP_004892233.1| - 9.4e-28 97.2 0.0 1.2e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681709|ref|YP_004892233.1| - 2e-14 54.2 0.1 2.4e-07 30.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|352681709|ref|YP_004892233.1| - 2.6e-05 24.6 0.1 4.1e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|352681709|ref|YP_004892233.1| - 9.9e-05 21.6 0.2 0.02 14.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352681709|ref|YP_004892233.1| - 0.00024 20.5 0.1 0.00053 19.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|352681709|ref|YP_004892233.1| - 0.00024 21.2 0.1 0.004 17.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|352681709|ref|YP_004892233.1| - 0.0023 17.4 0.0 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|352681709|ref|YP_004892233.1| - 0.0039 16.7 0.0 0.0096 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|352681709|ref|YP_004892233.1| - 0.0077 15.3 0.0 0.16 10.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|352681709|ref|YP_004892233.1| - 0.01 15.8 0.0 0.02 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|352681709|ref|YP_004892233.1| - 0.013 15.2 0.0 0.047 13.4 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|352681709|ref|YP_004892233.1| - 0.013 15.7 0.1 0.12 12.5 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|352681709|ref|YP_004892233.1| - 0.022 14.6 0.1 0.13 12.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|352681709|ref|YP_004892233.1| - 0.022 14.6 0.1 0.23 11.3 0.1 2.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|352681709|ref|YP_004892233.1| - 0.035 13.2 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|352681709|ref|YP_004892233.1| - 0.044 13.2 0.2 0.12 11.7 0.0 1.7 2 1 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|352681709|ref|YP_004892233.1| - 0.046 13.4 0.0 0.074 12.7 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase Dynamin_N PF00350.18 gi|352681709|ref|YP_004892233.1| - 0.059 13.1 0.0 0.39 10.5 0.0 1.9 1 1 0 1 1 1 0 Dynamin family AAA_14 PF13173.1 gi|352681709|ref|YP_004892233.1| - 0.089 12.6 0.1 1.3 8.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|352681709|ref|YP_004892233.1| - 0.11 11.3 0.3 0.25 10.2 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.7 gi|352681709|ref|YP_004892233.1| - 0.16 11.6 0.1 0.4 10.3 0.1 1.7 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|352681709|ref|YP_004892233.1| - 0.16 11.8 0.3 0.55 10.2 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Trypsin_2 PF13365.1 gi|352681710|ref|YP_004892234.1| - 2.7e-15 56.3 0.1 5.2e-15 55.4 0.1 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|352681710|ref|YP_004892234.1| - 1.3e-09 37.8 0.0 2.2e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|352681710|ref|YP_004892234.1| - 4.8e-09 36.1 0.0 1.6e-08 34.3 0.0 1.7 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|352681710|ref|YP_004892234.1| - 6.3e-07 29.4 0.0 1.5e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S29 PF02907.10 gi|352681710|ref|YP_004892234.1| - 0.0026 17.3 0.1 0.035 13.6 0.0 2.3 2 0 0 2 2 2 1 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.4 gi|352681710|ref|YP_004892234.1| - 0.02 13.3 1.2 0.022 13.2 0.2 1.4 2 0 0 2 2 2 0 Peptidase S46 Aldo_ket_red PF00248.16 gi|352681711|ref|YP_004892235.1| - 5.6e-49 166.4 0.0 6.5e-49 166.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family AIRS_C PF02769.17 gi|352681712|ref|YP_004892236.1| - 3.2e-19 69.4 0.1 5.2e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|352681712|ref|YP_004892236.1| - 2.7e-16 59.5 0.3 2.2e-15 56.6 0.1 2.3 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Hom_end PF05204.9 gi|352681712|ref|YP_004892236.1| - 0.057 13.3 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 Homing endonuclease TroA PF01297.12 gi|352681713|ref|YP_004892237.1| - 1.5e-12 47.3 0.0 1.3e-11 44.2 0.0 2.0 1 1 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|352681714|ref|YP_004892238.1| - 1.6e-21 77.0 0.0 2.3e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681714|ref|YP_004892238.1| - 2.4e-11 44.1 0.2 4.9e-05 23.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|352681714|ref|YP_004892238.1| - 2.5e-06 27.9 0.1 4.3e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|352681714|ref|YP_004892238.1| - 8.2e-06 25.2 0.1 1.5e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|352681714|ref|YP_004892238.1| - 1.7e-05 24.9 0.0 4.4e-05 23.6 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|352681714|ref|YP_004892238.1| - 2.9e-05 23.9 0.0 0.00022 21.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352681714|ref|YP_004892238.1| - 4.2e-05 23.6 0.2 9.4e-05 22.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|352681714|ref|YP_004892238.1| - 5e-05 22.6 0.1 0.011 14.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|352681714|ref|YP_004892238.1| - 0.0011 17.6 1.1 0.084 11.4 0.3 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class T2SE PF00437.15 gi|352681714|ref|YP_004892238.1| - 0.0019 17.1 0.0 0.0031 16.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|352681714|ref|YP_004892238.1| - 0.0052 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 NTPase Mg_chelatase PF01078.16 gi|352681714|ref|YP_004892238.1| - 0.0064 15.6 0.3 0.023 13.8 0.1 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|352681714|ref|YP_004892238.1| - 0.014 14.5 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Guanylate_kin PF00625.16 gi|352681714|ref|YP_004892238.1| - 0.016 14.6 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 Guanylate kinase AAA_30 PF13604.1 gi|352681714|ref|YP_004892238.1| - 0.018 14.6 0.1 0.1 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|352681714|ref|YP_004892238.1| - 0.019 15.1 0.1 0.057 13.6 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|352681714|ref|YP_004892238.1| - 0.024 14.3 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|352681714|ref|YP_004892238.1| - 0.024 14.3 4.2 0.039 13.6 0.1 3.0 2 1 1 3 3 3 0 Part of AAA domain ArgK PF03308.11 gi|352681714|ref|YP_004892238.1| - 0.032 13.0 0.1 0.05 12.3 0.1 1.2 1 0 0 1 1 1 0 ArgK protein Arch_ATPase PF01637.13 gi|352681714|ref|YP_004892238.1| - 0.037 13.7 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MutS_V PF00488.16 gi|352681714|ref|YP_004892238.1| - 0.049 13.0 0.0 0.072 12.4 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_5 PF07728.9 gi|352681714|ref|YP_004892238.1| - 0.071 12.8 0.3 3.5 7.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|352681714|ref|YP_004892238.1| - 0.08 13.2 0.0 2.3 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|352681714|ref|YP_004892238.1| - 0.084 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|352681714|ref|YP_004892238.1| - 0.088 13.6 0.3 0.16 12.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|352681714|ref|YP_004892238.1| - 0.12 11.8 1.5 0.65 9.3 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|352681714|ref|YP_004892238.1| - 0.14 11.1 0.0 2.5 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|352681714|ref|YP_004892238.1| - 0.14 11.5 0.5 6.5 6.1 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|352681714|ref|YP_004892238.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|352681714|ref|YP_004892238.1| - 0.2 10.2 0.1 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC-3 PF00950.12 gi|352681715|ref|YP_004892239.1| - 1.2e-21 77.2 28.3 1.5e-21 76.8 19.6 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|352681715|ref|YP_004892239.1| - 3.2e-07 29.4 26.5 3.2e-07 29.4 18.3 2.2 1 1 0 2 2 2 1 FecCD transport family Ubiq-Cytc-red_N PF09165.5 gi|352681715|ref|YP_004892239.1| - 3.6 7.9 9.9 4.1 7.7 0.8 3.3 3 0 0 3 3 3 0 Ubiquinol-cytochrome c reductase 8 kDa, N-terminal Aconitase PF00330.15 gi|352681716|ref|YP_004892240.1| - 4.4e-137 457.3 0.0 5.6e-137 456.9 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|352681716|ref|YP_004892240.1| - 9.3e-37 126.0 0.0 1.5e-36 125.3 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain HTH_38 PF13936.1 gi|352681716|ref|YP_004892240.1| - 0.063 12.8 0.1 0.41 10.2 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain TIM PF00121.13 gi|352681717|ref|YP_004892241.1| - 9.9e-34 116.4 0.1 1.4e-31 109.4 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|352681717|ref|YP_004892241.1| - 3.1e-06 26.4 1.2 4.4e-06 25.9 0.2 1.7 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|352681717|ref|YP_004892241.1| - 0.00015 21.0 4.2 0.00027 20.2 2.9 1.7 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|352681717|ref|YP_004892241.1| - 0.0018 17.6 0.1 0.0075 15.5 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.16 gi|352681717|ref|YP_004892241.1| - 0.003 16.6 0.1 0.0077 15.3 0.0 1.7 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase Peripla_BP_6 PF13458.1 gi|352681717|ref|YP_004892241.1| - 0.0038 16.6 0.2 0.034 13.5 0.0 2.1 2 0 0 2 2 2 1 Periplasmic binding protein FMN_dh PF01070.13 gi|352681717|ref|YP_004892241.1| - 0.0067 15.3 0.9 0.0067 15.3 0.6 2.3 2 1 0 3 3 3 1 FMN-dependent dehydrogenase QRPTase_C PF01729.14 gi|352681718|ref|YP_004892242.1| - 4e-19 68.7 0.0 5.7e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|352681718|ref|YP_004892242.1| - 2.7e-05 23.8 0.0 5.8e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Citrate_synt PF00285.16 gi|352681719|ref|YP_004892243.1| - 1.1e-123 412.5 0.0 1.2e-123 412.3 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase HTH_32 PF13565.1 gi|352681719|ref|YP_004892243.1| - 0.13 13.0 1.0 0.42 11.4 0.7 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.1 gi|352681721|ref|YP_004892245.1| - 2.5e-05 23.5 0.0 4.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|352681721|ref|YP_004892245.1| - 4.1e-05 23.3 0.0 7e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|352681721|ref|YP_004892245.1| - 0.00081 19.0 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF977 PF06163.6 gi|352681721|ref|YP_004892245.1| - 0.044 13.5 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_AsnC-type PF13404.1 gi|352681721|ref|YP_004892245.1| - 0.053 13.0 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ALMT PF11744.3 gi|352681722|ref|YP_004892246.1| - 0.26 9.8 2.7 0.31 9.6 1.9 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF2613 PF11021.3 gi|352681722|ref|YP_004892246.1| - 0.27 10.9 1.4 0.67 9.7 1.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF2755 PF10954.3 gi|352681723|ref|YP_004892247.1| - 0.075 12.7 3.2 1.8 8.2 0.2 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2755) MoeA_N PF03453.12 gi|352681726|ref|YP_004892250.1| - 3.4e-52 176.0 0.2 5.6e-52 175.3 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|352681726|ref|YP_004892250.1| - 1.6e-28 98.9 0.0 2.7e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|352681726|ref|YP_004892250.1| - 4.7e-16 58.5 0.1 1.9e-15 56.5 0.1 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) QueC PF06508.8 gi|352681727|ref|YP_004892251.1| - 3.3e-53 180.1 0.0 4.2e-53 179.7 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.1 gi|352681727|ref|YP_004892251.1| - 3.3e-15 55.9 0.0 5.8e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|352681727|ref|YP_004892251.1| - 1.6e-13 50.7 0.0 4e-13 49.4 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.9 gi|352681727|ref|YP_004892251.1| - 3.6e-05 23.3 0.0 0.0002 20.9 0.0 2.0 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|352681727|ref|YP_004892251.1| - 0.00086 17.9 0.0 0.0016 17.0 0.0 1.4 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|352681727|ref|YP_004892251.1| - 0.019 14.4 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF3700 PF12481.3 gi|352681727|ref|YP_004892251.1| - 0.075 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Aluminium induced protein ATP_bind_3 PF01171.15 gi|352681727|ref|YP_004892251.1| - 0.087 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 PP-loop family HTH_20 PF12840.2 gi|352681728|ref|YP_004892252.1| - 1.3e-05 24.9 0.0 1.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|352681728|ref|YP_004892252.1| - 0.00047 19.7 0.0 0.0007 19.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|352681728|ref|YP_004892252.1| - 0.00049 19.4 0.0 0.00069 18.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|352681728|ref|YP_004892252.1| - 0.01 15.8 0.1 0.018 15.0 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|352681728|ref|YP_004892252.1| - 0.027 14.6 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.5 gi|352681728|ref|YP_004892252.1| - 0.069 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3227 PF11537.3 gi|352681729|ref|YP_004892253.1| - 0.017 15.2 0.1 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3227) RVT_3 PF13456.1 gi|352681730|ref|YP_004892254.1| - 6.4e-27 93.1 0.1 1e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|352681730|ref|YP_004892254.1| - 3.6e-13 49.9 0.0 4.9e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 RNase H PhageMin_Tail PF10145.4 gi|352681730|ref|YP_004892254.1| - 0.0002 21.0 0.1 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 Phage-related minor tail protein AP_endonuc_2 PF01261.19 gi|352681730|ref|YP_004892254.1| - 0.0038 16.5 0.1 0.012 14.9 0.1 1.9 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Ham1p_like PF01725.11 gi|352681730|ref|YP_004892254.1| - 0.092 12.1 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Ham1 family Cation_ATPase_N PF00690.21 gi|352681730|ref|YP_004892254.1| - 0.28 10.6 1.2 12 5.4 0.4 2.3 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus Abhydrolase_5 PF12695.2 gi|352681731|ref|YP_004892255.1| - 4.7e-16 58.8 0.0 1.4e-15 57.2 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|352681731|ref|YP_004892255.1| - 1.2e-15 58.0 0.5 8.8e-15 55.1 0.3 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|352681731|ref|YP_004892255.1| - 1.6e-09 37.5 0.0 2.1e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|352681731|ref|YP_004892255.1| - 6.5e-08 32.0 0.0 8.8e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|352681731|ref|YP_004892255.1| - 1.5e-07 31.2 0.0 2.1e-05 24.2 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|352681731|ref|YP_004892255.1| - 0.0072 16.0 0.0 0.021 14.5 0.0 1.7 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal PGAP1 PF07819.8 gi|352681731|ref|YP_004892255.1| - 0.013 15.1 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein Peptidase_S15 PF02129.13 gi|352681731|ref|YP_004892255.1| - 0.015 14.7 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|352681731|ref|YP_004892255.1| - 0.023 13.9 0.0 0.27 10.4 0.0 2.3 2 1 0 2 2 2 0 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|352681731|ref|YP_004892255.1| - 0.024 14.0 0.0 4.5 6.6 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Lipase_3 PF01764.20 gi|352681731|ref|YP_004892255.1| - 0.046 13.3 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) FSH1 PF03959.8 gi|352681731|ref|YP_004892255.1| - 0.053 12.9 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DUF2192 PF09958.4 gi|352681732|ref|YP_004892256.1| - 7.4e-73 244.5 5.1 8.6e-73 244.3 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) NUMOD3 PF07460.6 gi|352681732|ref|YP_004892256.1| - 0.12 12.2 0.1 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 NUMOD3 motif (2 copies) Ribosomal_L16 PF00252.13 gi|352681733|ref|YP_004892257.1| - 7.2e-35 119.6 0.1 8.3e-35 119.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Hydrolase_2 PF07486.7 gi|352681733|ref|YP_004892257.1| - 0.02 15.3 0.1 0.03 14.8 0.1 1.2 1 0 0 1 1 1 0 Cell Wall Hydrolase Dus PF01207.12 gi|352681733|ref|YP_004892257.1| - 0.063 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Urease_beta PF00699.15 gi|352681733|ref|YP_004892257.1| - 0.13 12.1 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Urease beta subunit OrfB_Zn_ribbon PF07282.6 gi|352681734|ref|YP_004892258.1| - 3.3e-12 45.8 0.1 7.7e-12 44.7 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|352681734|ref|YP_004892258.1| - 0.0001 21.9 0.5 0.00015 21.3 0.4 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.2 gi|352681734|ref|YP_004892258.1| - 0.00024 20.8 0.4 0.00038 20.2 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|352681734|ref|YP_004892258.1| - 0.0011 18.3 0.6 0.0019 17.6 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|352681734|ref|YP_004892258.1| - 0.0013 18.2 4.1 0.0031 16.9 2.8 1.7 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain HypA PF01155.14 gi|352681734|ref|YP_004892258.1| - 0.0023 17.6 0.9 0.0042 16.7 0.1 1.8 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|352681734|ref|YP_004892258.1| - 0.0033 16.5 4.0 0.47 9.7 0.1 2.2 1 1 1 2 2 2 2 zinc-ribbon domain OrfB_IS605 PF01385.14 gi|352681734|ref|YP_004892258.1| - 0.0079 15.6 0.3 0.012 15.0 0.2 1.2 1 0 0 1 1 1 1 Probable transposase UPF0547 PF10571.4 gi|352681734|ref|YP_004892258.1| - 0.033 13.8 2.9 0.18 11.5 2.3 1.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Baculo_ME53 PF06061.6 gi|352681734|ref|YP_004892258.1| - 0.044 12.7 0.0 0.068 12.1 0.0 1.2 1 0 0 1 1 1 0 Baculoviridae ME53 Ribosomal_L37e PF01907.14 gi|352681734|ref|YP_004892258.1| - 0.057 13.2 0.4 0.15 11.9 0.3 1.7 1 0 0 1 1 1 0 Ribosomal protein L37e zinc-ribbons_6 PF07191.7 gi|352681734|ref|YP_004892258.1| - 0.058 13.1 0.8 0.095 12.5 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|352681734|ref|YP_004892258.1| - 0.088 12.1 2.5 1 8.7 0.1 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding RNHCP PF12647.2 gi|352681734|ref|YP_004892258.1| - 0.11 12.3 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 RNHCP domain C1_1 PF00130.17 gi|352681734|ref|YP_004892258.1| - 0.13 11.9 0.2 0.24 11.1 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF4391 PF14335.1 gi|352681734|ref|YP_004892258.1| - 0.14 11.5 0.1 0.2 11.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) DUF2387 PF09526.5 gi|352681734|ref|YP_004892258.1| - 0.22 11.4 2.1 0.97 9.3 1.5 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|352681734|ref|YP_004892258.1| - 0.24 10.8 2.6 0.45 10.0 1.8 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-nanos PF05741.8 gi|352681734|ref|YP_004892258.1| - 0.33 10.9 2.7 38 4.3 1.1 2.8 2 1 1 3 3 3 0 Nanos RNA binding domain zf-TFIIB PF13453.1 gi|352681734|ref|YP_004892258.1| - 0.4 9.9 4.8 1.4 8.2 3.3 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|352681734|ref|YP_004892258.1| - 0.76 9.5 3.8 15 5.3 2.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|352681734|ref|YP_004892258.1| - 0.95 9.0 3.8 18 5.0 2.6 2.3 1 1 0 1 1 1 0 zinc-ribbon domain UBA PF00627.26 gi|352681735|ref|YP_004892259.1| - 8.5e-08 31.8 1.5 9.3e-08 31.7 0.2 1.7 2 0 0 2 2 2 1 UBA/TS-N domain B5 PF03484.10 gi|352681735|ref|YP_004892259.1| - 0.0012 18.6 0.0 0.0022 17.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase B5 domain NAC PF01849.13 gi|352681735|ref|YP_004892259.1| - 0.0047 16.4 0.1 0.0085 15.5 0.0 1.4 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.1 gi|352681735|ref|YP_004892259.1| - 0.0067 15.9 0.0 0.015 14.8 0.1 1.5 2 0 0 2 2 2 1 UBA-like domain SPT6_acidic PF14632.1 gi|352681735|ref|YP_004892259.1| - 0.02 15.0 0.1 0.03 14.4 0.1 1.2 1 0 0 1 1 1 0 Acidic N-terminal SPT6 RNA_pol_Rpb5_C PF01191.14 gi|352681735|ref|YP_004892259.1| - 0.11 12.0 0.0 0.27 10.8 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain tRNA-synt_2c PF01411.14 gi|352681736|ref|YP_004892260.1| - 4e-119 398.4 0.0 5e-119 398.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|352681736|ref|YP_004892260.1| - 1.8e-13 50.1 0.2 4.1e-13 48.9 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|352681737|ref|YP_004892261.1| - 0.0023 17.5 0.0 0.0054 16.4 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain zf-ribbon_3 PF13248.1 gi|352681739|ref|YP_004892263.1| - 0.003 16.7 1.2 0.2 10.8 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|352681739|ref|YP_004892263.1| - 0.0066 16.1 0.9 3 7.5 0.0 2.1 2 0 0 2 2 2 2 Nudix N-terminal Auto_anti-p27 PF06677.7 gi|352681739|ref|YP_004892263.1| - 0.07 12.9 1.5 3 7.6 0.2 2.3 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|352681739|ref|YP_004892263.1| - 0.083 12.6 2.5 0.45 10.2 0.5 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|352681739|ref|YP_004892263.1| - 0.78 9.1 2.8 14 5.1 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding STT3 PF02516.9 gi|352681740|ref|YP_004892264.1| - 7.2e-25 87.9 51.8 1.9e-23 83.2 35.9 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit EIF_2_alpha PF07541.7 gi|352681741|ref|YP_004892265.1| - 2.1e-21 75.7 0.3 7.8e-21 73.9 0.0 2.0 1 1 1 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|352681741|ref|YP_004892265.1| - 1.1e-06 28.5 0.7 4.5e-06 26.6 0.1 2.1 2 0 0 2 2 2 1 S1 RNA binding domain PNMA PF14893.1 gi|352681741|ref|YP_004892265.1| - 0.037 13.0 0.0 0.046 12.7 0.0 1.3 1 0 0 1 1 1 0 PNMA Lipase_GDSL_2 PF13472.1 gi|352681741|ref|YP_004892265.1| - 0.054 13.6 0.1 0.11 12.6 0.0 1.6 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family DUF552 PF04472.7 gi|352681741|ref|YP_004892265.1| - 0.056 13.3 1.1 2.6 8.0 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF552) Glyco_trans_1_4 PF13692.1 gi|352681741|ref|YP_004892265.1| - 0.085 13.0 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF2884 PF11101.3 gi|352681741|ref|YP_004892265.1| - 0.13 11.5 0.7 0.35 10.2 0.1 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2884) Nop10p PF04135.7 gi|352681742|ref|YP_004892266.1| - 1.2e-10 40.9 3.7 8.1e-10 38.2 2.6 2.0 1 1 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Ribosomal_L32p PF01783.18 gi|352681742|ref|YP_004892266.1| - 0.00062 19.8 0.1 0.0011 19.0 0.1 1.5 1 0 0 1 1 1 1 Ribosomal L32p protein family zf-TFIIB PF13453.1 gi|352681742|ref|YP_004892266.1| - 0.00081 18.5 1.0 0.0088 15.2 0.1 2.2 2 0 0 2 2 2 1 Transcription factor zinc-finger DUF35_N PF12172.3 gi|352681742|ref|YP_004892266.1| - 0.0051 16.6 1.3 0.009 15.8 0.9 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|352681742|ref|YP_004892266.1| - 0.02 14.1 3.9 0.067 12.4 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|352681742|ref|YP_004892266.1| - 0.023 14.4 1.3 0.036 13.8 0.9 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e DZR PF12773.2 gi|352681742|ref|YP_004892266.1| - 0.029 14.2 0.4 0.042 13.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.6 gi|352681742|ref|YP_004892266.1| - 0.03 14.1 0.7 0.044 13.6 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Mu-like_Com PF10122.4 gi|352681742|ref|YP_004892266.1| - 0.057 12.4 0.6 3.7 6.6 0.2 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com PolC_DP2 PF03833.8 gi|352681742|ref|YP_004892266.1| - 0.08 10.6 0.1 0.08 10.5 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_5 PF13719.1 gi|352681742|ref|YP_004892266.1| - 0.1 12.1 1.1 13 5.4 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|352681742|ref|YP_004892266.1| - 0.12 12.4 4.0 3.6 7.6 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|352681742|ref|YP_004892266.1| - 0.15 11.7 1.4 13 5.5 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|352681742|ref|YP_004892266.1| - 0.16 11.8 3.4 0.24 11.2 2.0 1.8 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-Sec23_Sec24 PF04810.10 gi|352681742|ref|YP_004892266.1| - 0.28 10.7 2.0 0.48 10.0 0.3 1.9 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger TF_Zn_Ribbon PF08271.7 gi|352681742|ref|YP_004892266.1| - 1.1 8.5 4.5 8.2 5.8 3.1 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1936 PF09151.5 gi|352681742|ref|YP_004892266.1| - 1.2 8.7 3.9 2.7 7.5 0.3 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) zinc_ribbon_2 PF13240.1 gi|352681742|ref|YP_004892266.1| - 1.4 8.5 7.5 33 4.1 5.2 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|352681742|ref|YP_004892266.1| - 2.1 8.3 5.5 20 5.2 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|352681742|ref|YP_004892266.1| - 3.9 7.3 5.5 2.8 7.8 0.3 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NAD_binding_2 PF03446.10 gi|352681743|ref|YP_004892267.1| - 1.7e-33 115.7 0.4 2.4e-33 115.2 0.3 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|352681743|ref|YP_004892267.1| - 1.8e-31 108.7 0.0 3.1e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|352681743|ref|YP_004892267.1| - 1.8e-10 41.1 0.1 3.6e-09 36.9 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|352681743|ref|YP_004892267.1| - 4.7e-06 26.7 0.0 7.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|352681743|ref|YP_004892267.1| - 3.9e-05 22.8 0.0 6.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|352681743|ref|YP_004892267.1| - 0.0016 18.1 0.1 0.0033 17.0 0.0 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|352681743|ref|YP_004892267.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|352681743|ref|YP_004892267.1| - 0.013 16.0 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|352681743|ref|YP_004892267.1| - 0.019 14.9 0.1 0.074 13.0 0.1 1.9 1 1 0 1 1 1 0 TrkA-N domain OCD_Mu_crystall PF02423.10 gi|352681743|ref|YP_004892267.1| - 0.029 13.1 0.0 0.038 12.7 0.0 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family UDPG_MGDP_dh_N PF03721.9 gi|352681743|ref|YP_004892267.1| - 0.044 13.1 0.1 2.7 7.3 0.0 2.4 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|352681743|ref|YP_004892267.1| - 0.074 12.4 0.1 0.24 10.8 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA HAD_2 PF13419.1 gi|352681744|ref|YP_004892268.1| - 1.1e-21 77.8 0.1 1.3e-21 77.5 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|352681744|ref|YP_004892268.1| - 5.4e-11 42.0 0.0 9.3e-11 41.2 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|352681744|ref|YP_004892268.1| - 1.1e-10 42.3 0.0 1.7e-10 41.6 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|352681744|ref|YP_004892268.1| - 0.00038 20.6 0.8 0.00097 19.3 0.5 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|352681746|ref|YP_004892270.1| - 4.7e-07 30.1 0.0 7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|352681746|ref|YP_004892270.1| - 3.1 7.2 5.5 15 5.0 3.8 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) KaiC PF06745.8 gi|352681747|ref|YP_004892271.1| - 8.7e-14 51.1 0.1 1.2e-12 47.4 0.0 2.4 2 1 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|352681747|ref|YP_004892271.1| - 6.5e-09 35.4 0.1 6.1e-08 32.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|352681747|ref|YP_004892271.1| - 2.3e-08 32.7 0.1 1.7e-05 23.3 0.0 2.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.1 gi|352681747|ref|YP_004892271.1| - 5.8e-08 32.9 0.0 9.3e-07 29.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|352681747|ref|YP_004892271.1| - 1.1e-06 28.9 0.0 2.7e-05 24.3 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|352681747|ref|YP_004892271.1| - 3.9e-05 23.3 0.7 0.0015 18.1 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352681747|ref|YP_004892271.1| - 4.8e-05 23.0 0.0 0.00021 20.9 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain NACHT PF05729.7 gi|352681747|ref|YP_004892271.1| - 0.0002 21.0 0.0 0.00079 19.1 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|352681747|ref|YP_004892271.1| - 0.00026 21.2 0.0 0.0037 17.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|352681747|ref|YP_004892271.1| - 0.00041 20.2 0.0 0.0019 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|352681747|ref|YP_004892271.1| - 0.00053 20.8 0.0 0.0014 19.4 0.0 1.8 2 1 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|352681747|ref|YP_004892271.1| - 0.0012 18.5 0.0 0.029 14.0 0.0 2.4 2 1 0 2 2 2 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|352681747|ref|YP_004892271.1| - 0.0018 17.7 0.0 0.01 15.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|352681747|ref|YP_004892271.1| - 0.0026 17.7 0.0 0.0063 16.5 0.0 1.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|352681747|ref|YP_004892271.1| - 0.0038 16.7 0.0 0.0072 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA-like domain SRP54 PF00448.17 gi|352681747|ref|YP_004892271.1| - 0.0074 15.7 0.0 0.25 10.7 0.0 2.4 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain Glyco_trans_4_4 PF13579.1 gi|352681747|ref|YP_004892271.1| - 0.01 15.9 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain AAA_13 PF13166.1 gi|352681747|ref|YP_004892271.1| - 0.011 14.3 0.0 0.015 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|352681747|ref|YP_004892271.1| - 0.013 15.0 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|352681747|ref|YP_004892271.1| - 0.014 15.7 0.2 0.025 14.9 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|352681747|ref|YP_004892271.1| - 0.03 14.1 0.2 0.1 12.4 0.0 2.0 2 1 0 2 2 1 0 AAA domain Glyco_trans_4_2 PF13477.1 gi|352681747|ref|YP_004892271.1| - 0.03 14.1 0.0 0.24 11.2 0.0 2.2 2 1 0 2 2 2 0 Glycosyl transferase 4-like RuvB_N PF05496.7 gi|352681747|ref|YP_004892271.1| - 0.034 13.2 0.1 0.14 11.1 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus RNA_helicase PF00910.17 gi|352681747|ref|YP_004892271.1| - 0.045 13.9 0.0 0.19 11.9 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|352681747|ref|YP_004892271.1| - 0.047 13.4 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Glyco_transf_4 PF13439.1 gi|352681747|ref|YP_004892271.1| - 0.054 13.2 0.0 0.095 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 PhoH PF02562.11 gi|352681747|ref|YP_004892271.1| - 0.084 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Zot PF05707.7 gi|352681747|ref|YP_004892271.1| - 0.1 12.0 0.0 0.44 9.9 0.0 2.1 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) PEPCK_ATP PF01293.15 gi|352681747|ref|YP_004892271.1| - 0.1 11.0 0.0 0.18 10.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_30 PF13604.1 gi|352681747|ref|YP_004892271.1| - 0.11 12.1 0.1 0.88 9.1 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|352681747|ref|YP_004892271.1| - 0.13 12.2 0.0 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|352681747|ref|YP_004892271.1| - 0.14 11.1 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|352681747|ref|YP_004892271.1| - 0.17 10.7 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF650 PF04894.7 gi|352681748|ref|YP_004892272.1| - 1.7e-95 319.5 0.0 2.2e-95 319.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|352681748|ref|YP_004892272.1| - 7.3e-36 122.1 0.0 1.1e-35 121.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Fer4_2 PF12797.2 gi|352681748|ref|YP_004892272.1| - 0.38 10.7 1.6 0.65 10.0 1.1 1.4 1 0 0 1 1 1 0 4Fe-4S binding domain PDT PF00800.13 gi|352681749|ref|YP_004892273.1| - 5e-35 120.6 0.0 6.4e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|352681749|ref|YP_004892273.1| - 8.4e-08 31.5 0.0 1.7e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 ACT domain Nucleoporin_C PF03177.9 gi|352681750|ref|YP_004892274.1| - 0.077 11.5 0.2 0.085 11.3 0.1 1.0 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal DEAD PF00270.24 gi|352681751|ref|YP_004892275.1| - 4.9e-25 87.9 0.0 1.4e-24 86.5 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|352681751|ref|YP_004892275.1| - 1.2e-14 54.1 0.1 1.2e-14 54.1 0.0 3.3 5 0 0 5 5 3 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|352681751|ref|YP_004892275.1| - 7.6e-09 35.3 0.2 2.2e-08 33.8 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HHH_2 PF12826.2 gi|352681751|ref|YP_004892275.1| - 3.2e-06 26.9 0.0 2.2e-05 24.2 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|352681751|ref|YP_004892275.1| - 1.1e-05 24.9 0.0 4.5e-05 22.9 0.0 2.1 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda ResIII PF04851.10 gi|352681751|ref|YP_004892275.1| - 3.2e-05 23.8 0.0 8.3e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|352681751|ref|YP_004892275.1| - 0.00092 18.7 0.1 0.34 10.7 0.2 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|352681751|ref|YP_004892275.1| - 0.0029 16.4 0.0 0.0045 15.8 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain HHH_3 PF12836.2 gi|352681751|ref|YP_004892275.1| - 0.05 13.5 0.0 0.15 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|352681751|ref|YP_004892275.1| - 0.06 12.7 0.0 1.3 8.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain IMS_HHH PF11798.3 gi|352681751|ref|YP_004892275.1| - 0.11 12.5 0.0 6 7.1 0.0 2.9 2 0 0 2 2 2 0 IMS family HHH motif KaiC PF06745.8 gi|352681751|ref|YP_004892275.1| - 0.14 11.2 0.0 0.31 10.0 0.0 1.5 1 0 0 1 1 1 0 KaiC Sec63 PF02889.11 gi|352681751|ref|YP_004892275.1| - 0.28 10.3 0.0 1.7 7.7 0.0 1.9 1 1 0 1 1 1 0 Sec63 Brl domain zf-Mss51 PF13824.1 gi|352681752|ref|YP_004892276.1| - 0.0014 18.4 1.0 0.14 12.0 0.0 2.2 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 GFA PF04828.9 gi|352681752|ref|YP_004892276.1| - 0.0045 16.9 0.9 1.1 9.2 0.1 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|352681752|ref|YP_004892276.1| - 0.018 14.5 1.7 0.044 13.2 1.2 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|352681752|ref|YP_004892276.1| - 0.019 15.2 0.4 0.03 14.5 0.3 1.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|352681752|ref|YP_004892276.1| - 0.019 14.4 2.0 0.057 12.8 1.4 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.17 gi|352681752|ref|YP_004892276.1| - 0.019 14.6 0.2 0.028 14.1 0.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Elf1 PF05129.8 gi|352681752|ref|YP_004892276.1| - 0.029 14.0 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-TFIIB PF13453.1 gi|352681752|ref|YP_004892276.1| - 0.035 13.2 0.7 0.06 12.5 0.5 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-HYPF PF07503.7 gi|352681752|ref|YP_004892276.1| - 0.045 13.1 0.4 1 8.8 0.0 2.1 2 0 0 2 2 2 0 HypF finger TF_Zn_Ribbon PF08271.7 gi|352681752|ref|YP_004892276.1| - 0.047 13.0 0.8 0.079 12.2 0.5 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding zf-CSL PF05207.8 gi|352681752|ref|YP_004892276.1| - 0.069 12.6 1.6 0.14 11.7 1.1 1.5 1 1 0 1 1 1 0 CSL zinc finger DZR PF12773.2 gi|352681752|ref|YP_004892276.1| - 0.077 12.8 0.2 0.14 12.0 0.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|352681752|ref|YP_004892276.1| - 0.08 12.6 0.9 0.14 11.8 0.7 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|352681752|ref|YP_004892276.1| - 0.09 12.0 0.9 4 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|352681752|ref|YP_004892276.1| - 0.35 10.8 1.8 0.94 9.4 1.1 1.7 1 1 1 2 2 2 0 Zinc ribbon domain zf-HIT PF04438.11 gi|352681752|ref|YP_004892276.1| - 3.2 7.4 5.5 4.2 7.0 1.0 2.1 2 0 0 2 2 2 0 HIT zinc finger CBS PF00571.23 gi|352681753|ref|YP_004892277.1| - 9.2e-33 111.7 1.0 1e-15 57.2 0.0 2.1 2 0 0 2 2 2 2 CBS domain Sld5 PF05916.6 gi|352681754|ref|YP_004892278.1| - 9.3e-06 25.8 0.1 1.1e-05 25.6 0.1 1.1 1 0 0 1 1 1 1 GINS complex protein Adenylsucc_synt PF00709.16 gi|352681755|ref|YP_004892279.1| - 1.9e-72 244.2 0.0 9.2e-37 126.6 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DAO PF01266.19 gi|352681756|ref|YP_004892280.1| - 4.5e-13 48.8 4.2 2e-06 26.9 0.4 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|352681756|ref|YP_004892280.1| - 1.8e-10 41.0 0.4 7.8e-06 25.9 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|352681756|ref|YP_004892280.1| - 5.2e-10 38.3 0.4 2.9e-05 22.7 0.3 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|352681756|ref|YP_004892280.1| - 3.1e-09 36.1 0.8 0.00083 18.3 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|352681756|ref|YP_004892280.1| - 4.7e-07 29.1 0.1 8.7e-07 28.2 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|352681756|ref|YP_004892280.1| - 7.2e-06 25.1 1.7 7.2e-06 25.1 1.2 2.3 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|352681756|ref|YP_004892280.1| - 1.4e-05 25.0 0.1 4.4e-05 23.4 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|352681756|ref|YP_004892280.1| - 4.7e-05 23.5 0.4 0.017 15.1 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|352681756|ref|YP_004892280.1| - 0.00015 20.9 0.6 0.00024 20.2 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|352681756|ref|YP_004892280.1| - 0.00021 20.3 0.7 0.00031 19.7 0.5 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|352681756|ref|YP_004892280.1| - 0.0031 17.8 1.4 1.1 9.7 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352681756|ref|YP_004892280.1| - 0.0062 16.3 0.3 0.12 12.1 0.1 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|352681756|ref|YP_004892280.1| - 0.014 14.4 2.2 0.039 13.0 1.1 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.16 gi|352681756|ref|YP_004892280.1| - 0.026 14.3 0.9 0.061 13.1 0.6 1.5 1 0 0 1 1 1 0 ThiF family Trp_halogenase PF04820.9 gi|352681756|ref|YP_004892280.1| - 0.15 10.6 0.7 0.23 10.0 0.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase DUF1286 PF06939.6 gi|352681757|ref|YP_004892281.1| - 4.7e-18 65.4 0.2 7.4e-18 64.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1286) DUF457 PF04307.9 gi|352681757|ref|YP_004892281.1| - 7.7e-06 25.3 7.8 0.00014 21.2 5.4 2.0 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF962 PF06127.6 gi|352681757|ref|YP_004892281.1| - 0.13 12.1 0.4 0.2 11.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF962) GtrA PF04138.9 gi|352681757|ref|YP_004892281.1| - 0.28 11.1 2.7 5.7 6.9 0.3 2.3 1 1 0 2 2 2 0 GtrA-like protein eRF1_1 PF03463.10 gi|352681758|ref|YP_004892282.1| - 4.8e-21 74.7 0.0 8.9e-21 73.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|352681758|ref|YP_004892282.1| - 1.6e-09 38.0 0.2 6.9e-09 35.9 0.2 2.1 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|352681758|ref|YP_004892282.1| - 0.00013 22.3 0.0 0.00032 21.0 0.0 1.7 1 1 0 1 1 1 1 eRF1 domain 2 DUF2776 PF10951.3 gi|352681759|ref|YP_004892283.1| - 0.0059 15.7 0.4 0.0059 15.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2776) DoxX_3 PF13781.1 gi|352681759|ref|YP_004892283.1| - 0.06 13.7 2.2 0.059 13.7 1.5 1.1 1 0 0 1 1 1 0 DoxX-like family DUF1469 PF07332.6 gi|352681759|ref|YP_004892283.1| - 3.7 7.2 6.7 3.8 7.2 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4190 PF13828.1 gi|352681759|ref|YP_004892283.1| - 8.8 5.9 8.4 28 4.3 5.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4190) DHDPS PF00701.17 gi|352681760|ref|YP_004892284.1| - 2.9e-58 196.7 0.0 3.5e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ACT_6 PF13740.1 gi|352681761|ref|YP_004892285.1| - 5e-20 70.9 2.0 5.7e-20 70.8 1.4 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|352681761|ref|YP_004892285.1| - 3.9e-12 45.3 3.2 5.1e-12 45.0 2.2 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|352681761|ref|YP_004892285.1| - 8.3e-05 22.8 1.8 0.00011 22.4 1.3 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|352681761|ref|YP_004892285.1| - 0.0004 19.8 0.7 0.00061 19.2 0.5 1.3 1 0 0 1 1 1 1 ACT domain UPF0158 PF03682.8 gi|352681761|ref|YP_004892285.1| - 0.11 12.1 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0158) DUF3236 PF11576.3 gi|352681761|ref|YP_004892285.1| - 0.16 11.4 1.5 0.19 11.1 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) Clp_N PF02861.15 gi|352681761|ref|YP_004892285.1| - 0.17 11.8 1.1 3.4 7.6 0.1 2.1 2 0 0 2 2 2 0 Clp amino terminal domain DUF711 PF05167.7 gi|352681762|ref|YP_004892286.1| - 1.1e-137 458.9 0.5 1.5e-137 458.5 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Lipase_GDSL_2 PF13472.1 gi|352681762|ref|YP_004892286.1| - 0.011 15.8 0.1 0.42 10.7 0.0 3.1 1 1 2 3 3 3 0 GDSL-like Lipase/Acylhydrolase family Met_asp_mut_E PF06368.6 gi|352681762|ref|YP_004892286.1| - 0.042 12.0 0.0 0.077 11.1 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) DUF1297 PF06973.7 gi|352681763|ref|YP_004892287.1| - 3.4e-78 261.2 0.0 4.1e-78 261.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|352681763|ref|YP_004892287.1| - 4.7e-44 149.1 0.0 6.7e-44 148.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|352681763|ref|YP_004892287.1| - 5.9e-06 26.1 0.0 0.00021 21.1 0.0 2.4 1 1 0 1 1 1 1 ATP-grasp domain DUF1297 PF06973.7 gi|352681764|ref|YP_004892288.1| - 1.1e-57 194.3 0.1 1.9e-57 193.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|352681764|ref|YP_004892288.1| - 6.1e-37 126.1 0.0 1.1e-36 125.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|352681764|ref|YP_004892288.1| - 0.0001 22.0 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|352681764|ref|YP_004892288.1| - 0.00021 21.2 0.0 0.00038 20.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|352681764|ref|YP_004892288.1| - 0.01 15.1 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|352681764|ref|YP_004892288.1| - 0.036 13.5 0.0 0.08 12.4 0.0 1.5 1 1 0 1 1 1 0 RimK-like ATP-grasp domain Lactamase_B PF00753.22 gi|352681765|ref|YP_004892289.1| - 4e-14 52.7 3.3 1.7e-13 50.6 2.3 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|352681765|ref|YP_004892289.1| - 0.00042 19.9 0.0 0.0007 19.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Abhydrolase_4 PF08386.5 gi|352681765|ref|YP_004892289.1| - 0.083 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein DUF359 PF04019.7 gi|352681767|ref|YP_004892291.1| - 7.4e-31 106.0 0.0 8.8e-31 105.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Colicin_C PF12106.3 gi|352681767|ref|YP_004892291.1| - 0.041 13.4 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Colicin C terminal ribonuclease domain DUF482 PF04339.7 gi|352681767|ref|YP_004892291.1| - 0.054 12.3 0.0 0.068 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF482 Lactamase_B_2 PF12706.2 gi|352681768|ref|YP_004892292.1| - 2.2e-26 92.6 0.0 2.6e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352681768|ref|YP_004892292.1| - 1e-11 44.8 0.1 1.8e-11 44.0 0.1 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|352681768|ref|YP_004892292.1| - 1.5e-06 28.0 0.1 4.7e-06 26.4 0.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DHDPS PF00701.17 gi|352681768|ref|YP_004892292.1| - 0.013 14.1 0.0 0.019 13.5 0.0 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family T2SN PF01203.14 gi|352681768|ref|YP_004892292.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein N DUF1743 PF08489.6 gi|352681769|ref|YP_004892293.1| - 1.9e-28 98.5 0.0 3e-28 97.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) zf-NADH-PPase PF09297.6 gi|352681769|ref|YP_004892293.1| - 0.18 11.3 5.6 0.36 10.3 3.9 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|352681769|ref|YP_004892293.1| - 0.46 10.2 0.1 0.46 10.2 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|352681769|ref|YP_004892293.1| - 1 9.2 5.8 5 7.0 4.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain BPD_transp_1 PF00528.17 gi|352681770|ref|YP_004892294.1| - 1.9e-21 76.4 65.6 4.5e-13 49.1 19.6 3.8 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|352681771|ref|YP_004892295.1| - 1.2e-13 51.4 11.3 7.6e-13 48.8 5.6 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|352681771|ref|YP_004892295.1| - 3.2e-07 30.3 2.1 8.4e-07 28.9 1.4 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|352681771|ref|YP_004892295.1| - 0.011 15.4 2.2 0.018 14.6 0.7 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Wzz PF02706.10 gi|352681771|ref|YP_004892295.1| - 0.15 11.9 0.4 0.56 10.0 0.3 2.0 2 0 0 2 2 2 0 Chain length determinant protein Hydrolase_3 PF08282.7 gi|352681772|ref|YP_004892296.1| - 8.7e-09 35.3 0.0 0.0022 17.6 0.1 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|352681772|ref|YP_004892296.1| - 0.00061 19.9 0.7 0.063 13.4 0.5 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|352681772|ref|YP_004892296.1| - 0.00069 18.9 0.0 0.0075 15.5 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.11 gi|352681772|ref|YP_004892296.1| - 0.0041 16.0 0.0 0.051 12.4 0.0 1.9 2 0 0 2 2 2 1 Trehalose-phosphatase Hydrolase PF00702.21 gi|352681772|ref|YP_004892296.1| - 0.04 14.3 0.3 0.19 12.1 0.1 2.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase FAA_hydrolase PF01557.13 gi|352681773|ref|YP_004892297.1| - 9e-71 237.7 0.0 1.2e-70 237.3 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family AAA_assoc_C PF09821.4 gi|352681776|ref|YP_004892300.1| - 5.5e-06 26.6 0.1 8.3e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 C-terminal AAA-associated domain HTH_45 PF14947.1 gi|352681776|ref|YP_004892300.1| - 0.021 14.6 0.1 0.024 14.4 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Complex1_49kDa PF00346.14 gi|352681777|ref|YP_004892301.1| - 2.1e-49 167.9 0.0 2.7e-49 167.6 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NADHdh PF00146.16 gi|352681778|ref|YP_004892302.1| - 6.1e-44 150.3 18.4 7.7e-44 149.9 12.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF3473 PF11959.3 gi|352681778|ref|YP_004892302.1| - 0.02 14.3 0.0 0.047 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3473) Fer4 PF00037.22 gi|352681779|ref|YP_004892303.1| - 4e-15 54.6 11.4 4.7e-08 32.2 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352681779|ref|YP_004892303.1| - 6.1e-13 48.3 20.8 4.8e-09 35.8 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352681779|ref|YP_004892303.1| - 1.3e-11 44.7 6.8 2.1e-11 43.9 4.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681779|ref|YP_004892303.1| - 2.3e-11 43.7 1.9 1.8e-05 24.9 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681779|ref|YP_004892303.1| - 1.7e-10 41.4 5.2 2.1e-05 25.1 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|352681779|ref|YP_004892303.1| - 2.3e-10 39.8 14.3 4.7e-06 26.2 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352681779|ref|YP_004892303.1| - 1e-09 38.2 1.1 0.00066 19.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681779|ref|YP_004892303.1| - 9.3e-09 35.0 4.8 4.9e-05 23.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352681779|ref|YP_004892303.1| - 1.2e-08 34.3 13.8 4.2e-05 23.2 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|352681779|ref|YP_004892303.1| - 5.6e-08 33.0 2.8 0.0018 18.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352681779|ref|YP_004892303.1| - 1.8e-07 30.9 12.8 0.00055 20.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|352681779|ref|YP_004892303.1| - 8.7e-05 22.8 17.0 0.012 16.1 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|352681779|ref|YP_004892303.1| - 0.00011 22.6 4.6 0.045 14.3 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|352681779|ref|YP_004892303.1| - 0.0022 18.3 9.5 0.18 12.2 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|352681779|ref|YP_004892303.1| - 0.0026 17.3 1.3 1 9.0 0.1 2.2 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.1 gi|352681779|ref|YP_004892303.1| - 0.015 15.6 16.3 0.17 12.3 2.2 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|352681780|ref|YP_004892304.1| - 1.3e-05 24.9 16.1 2.7e-05 23.9 11.1 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 OapA_N PF08525.6 gi|352681780|ref|YP_004892304.1| - 0.00044 19.9 0.0 0.00044 19.9 0.0 3.6 4 0 0 4 4 4 1 Opacity-associated protein A N-terminal motif HTH_10 PF04967.7 gi|352681780|ref|YP_004892304.1| - 0.04 13.4 1.8 0.1 12.1 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Imp-YgjV PF10688.4 gi|352681780|ref|YP_004892304.1| - 1.1 8.7 10.6 0.1 12.0 4.6 1.4 2 0 0 2 2 2 0 Bacterial inner membrane protein DUF4131 PF13567.1 gi|352681780|ref|YP_004892304.1| - 2.1 7.7 15.1 1 8.7 3.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) PsbH PF00737.15 gi|352681780|ref|YP_004892304.1| - 7 6.3 7.1 1.7 8.2 1.6 2.4 2 1 0 2 2 2 0 Photosystem II 10 kDa phosphoprotein Oxidored_q2 PF00420.19 gi|352681781|ref|YP_004892305.1| - 2.2e-10 39.9 3.2 2.5e-10 39.8 2.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4077 PF13295.1 gi|352681781|ref|YP_004892305.1| - 0.15 11.7 2.0 0.18 11.4 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4077) BphX PF06139.7 gi|352681781|ref|YP_004892305.1| - 0.19 11.2 10.2 0.55 9.8 7.1 1.6 1 1 0 1 1 1 0 BphX-like DUF4022 PF13214.1 gi|352681781|ref|YP_004892305.1| - 0.58 10.3 6.0 1.3 9.1 4.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4022) Pox_A14 PF05767.7 gi|352681781|ref|YP_004892305.1| - 1.3 9.0 4.7 0.61 10.0 1.5 1.8 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 BCLP PF12304.3 gi|352681781|ref|YP_004892305.1| - 1.8 7.9 9.4 2.5 7.4 6.5 1.3 1 1 0 1 1 1 0 Beta-casein like protein Holin_BlyA PF05102.7 gi|352681781|ref|YP_004892305.1| - 1.9 8.2 3.7 0.51 10.0 0.5 1.7 2 1 0 2 2 2 0 holin, BlyA family YtpI PF14007.1 gi|352681781|ref|YP_004892305.1| - 3.1 7.7 7.2 1.2 9.1 2.8 1.8 2 0 0 2 2 2 0 YtpI-like protein DUF4418 PF14387.1 gi|352681781|ref|YP_004892305.1| - 7.3 6.3 8.5 13 5.5 5.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) Oxidored_q1 PF00361.15 gi|352681782|ref|YP_004892306.1| - 2.9e-49 167.7 28.4 2.9e-49 167.7 19.7 2.8 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|352681782|ref|YP_004892306.1| - 0.35 10.4 4.8 0.11 12.0 0.3 2.5 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|352681783|ref|YP_004892307.1| - 9.9e-43 146.3 27.7 3.3e-42 144.6 11.3 3.3 3 0 0 3 3 3 2 NADH-Ubiquinone/plastoquinone (complex I), various chains NADH5_C PF06455.6 gi|352681783|ref|YP_004892307.1| - 0.00026 20.4 0.0 0.00026 20.4 0.0 3.0 3 0 0 3 3 3 1 NADH dehydrogenase subunit 5 C-terminus Oxidored_q1_N PF00662.15 gi|352681783|ref|YP_004892307.1| - 0.00026 20.4 4.9 0.0011 18.4 3.1 2.5 1 1 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|352681784|ref|YP_004892308.1| - 8.7e-17 61.2 18.6 8.7e-17 61.2 12.9 3.3 1 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NDK PF00334.14 gi|352681785|ref|YP_004892309.1| - 5.1e-45 152.5 0.0 4.2e-24 84.8 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase AMP-binding PF00501.23 gi|352681786|ref|YP_004892310.1| - 3.4e-76 256.3 0.0 4.5e-76 255.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352681786|ref|YP_004892310.1| - 3e-16 60.1 0.3 9e-16 58.5 0.2 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Tautomerase PF01361.16 gi|352681786|ref|YP_004892310.1| - 0.022 14.3 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 0 Tautomerase enzyme Thiolase_C PF02803.13 gi|352681787|ref|YP_004892311.1| - 0.065 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_C PF02803.13 gi|352681788|ref|YP_004892312.1| - 2.2e-05 23.8 0.0 0.58 9.5 0.0 3.1 3 0 0 3 3 3 2 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|352681788|ref|YP_004892312.1| - 0.021 14.4 0.0 3.8 7.2 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_M22 PF00814.20 gi|352681788|ref|YP_004892312.1| - 0.034 13.6 0.0 0.068 12.6 0.0 1.4 1 0 0 1 1 1 0 Glycoprotease family Thiolase_N PF00108.18 gi|352681788|ref|YP_004892312.1| - 0.08 11.9 0.0 7.5 5.4 0.0 2.2 2 0 0 2 2 2 0 Thiolase, N-terminal domain DUF35_N PF12172.3 gi|352681789|ref|YP_004892313.1| - 1.7e-10 40.5 0.4 4.1e-10 39.2 0.2 1.7 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|352681789|ref|YP_004892313.1| - 4.6e-10 39.5 0.2 7e-10 39.0 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|352681789|ref|YP_004892313.1| - 0.11 12.3 0.3 0.21 11.4 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|352681789|ref|YP_004892313.1| - 0.8 8.9 4.2 2.3 7.5 2.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|352681790|ref|YP_004892314.1| - 1.1e-06 28.3 0.2 1.9e-06 27.5 0.2 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|352681790|ref|YP_004892314.1| - 2.2e-05 24.6 0.0 3.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|352681790|ref|YP_004892314.1| - 0.083 12.7 0.1 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|352681790|ref|YP_004892314.1| - 0.11 12.2 0.7 0.2 11.3 0.5 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Auto_anti-p27 PF06677.7 gi|352681790|ref|YP_004892314.1| - 0.11 12.2 1.0 0.19 11.5 0.7 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|352681790|ref|YP_004892314.1| - 0.17 11.1 4.0 0.33 10.2 0.4 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352681790|ref|YP_004892314.1| - 0.19 11.2 3.3 0.41 10.1 2.3 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Acyl-CoA_dh_1 PF00441.19 gi|352681791|ref|YP_004892315.1| - 4.6e-45 153.3 2.6 7.3e-45 152.7 1.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|352681791|ref|YP_004892315.1| - 3e-27 95.4 0.0 6.7e-27 94.3 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|352681791|ref|YP_004892315.1| - 1.1e-22 79.2 0.2 2.2e-22 78.2 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|352681791|ref|YP_004892315.1| - 2.1e-20 73.3 1.1 3.5e-20 72.6 0.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain SprT-like PF10263.4 gi|352681794|ref|YP_004892318.1| - 0.032 13.8 0.0 0.032 13.8 0.0 1.1 1 0 0 1 1 1 0 SprT-like family WLM PF08325.5 gi|352681794|ref|YP_004892318.1| - 0.089 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 WLM domain Molybdopterin PF00384.17 gi|352681795|ref|YP_004892319.1| - 4.7e-34 117.8 0.0 7.2e-18 64.5 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Ribosomal_L44 PF00935.14 gi|352681796|ref|YP_004892320.1| - 7.6e-27 93.1 6.9 1e-26 92.7 4.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_2 PF13240.1 gi|352681796|ref|YP_004892320.1| - 0.0013 18.1 1.2 0.56 9.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352681796|ref|YP_004892320.1| - 0.0063 15.6 1.7 1.5 8.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|352681796|ref|YP_004892320.1| - 0.015 15.0 0.7 0.98 9.2 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|352681796|ref|YP_004892320.1| - 0.018 14.8 0.2 4.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2225 PF09986.4 gi|352681796|ref|YP_004892320.1| - 0.025 14.0 0.6 0.035 13.5 0.4 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) RNA_POL_M_15KD PF02150.11 gi|352681796|ref|YP_004892320.1| - 0.03 13.9 0.1 4 7.2 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|352681796|ref|YP_004892320.1| - 0.04 13.9 1.7 2.2 8.4 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L33 PF00471.15 gi|352681796|ref|YP_004892320.1| - 0.046 13.9 0.4 0.046 13.9 0.3 2.5 3 0 0 3 3 2 0 Ribosomal protein L33 zinc_ribbon_4 PF13717.1 gi|352681796|ref|YP_004892320.1| - 0.046 13.4 1.9 3.4 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-DNL PF05180.7 gi|352681796|ref|YP_004892320.1| - 0.061 13.0 1.5 5 6.9 0.0 2.2 2 0 0 2 2 2 0 DNL zinc finger zinc_ribbon_5 PF13719.1 gi|352681796|ref|YP_004892320.1| - 0.075 12.6 1.9 4.4 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|352681796|ref|YP_004892320.1| - 0.078 12.9 0.4 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|352681796|ref|YP_004892320.1| - 0.078 12.8 3.0 0.52 10.1 2.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon MCRS_N PF13325.1 gi|352681796|ref|YP_004892320.1| - 0.088 12.3 0.0 0.089 12.2 0.0 1.2 1 0 0 1 1 1 0 N-terminal region of micro-spherule protein IBR PF01485.16 gi|352681796|ref|YP_004892320.1| - 0.09 12.6 2.4 0.16 11.8 1.6 1.4 1 1 0 1 1 1 0 IBR domain TF_Zn_Ribbon PF08271.7 gi|352681796|ref|YP_004892320.1| - 0.094 12.0 0.4 2 7.7 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|352681796|ref|YP_004892320.1| - 0.11 12.8 0.3 0.82 10.0 0.2 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|352681796|ref|YP_004892320.1| - 0.11 11.9 1.3 6.1 6.4 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|352681796|ref|YP_004892320.1| - 0.14 11.6 2.9 2.6 7.6 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger PHD_2 PF13831.1 gi|352681796|ref|YP_004892320.1| - 0.2 11.0 2.7 1 8.7 0.1 2.4 3 0 0 3 3 3 0 PHD-finger RecR PF02132.10 gi|352681796|ref|YP_004892320.1| - 0.25 10.8 1.0 3.8 7.0 0.0 2.2 2 0 0 2 2 2 0 RecR protein Evr1_Alr PF04777.8 gi|352681796|ref|YP_004892320.1| - 0.3 10.9 1.5 1.3 8.9 0.1 2.0 1 1 1 2 2 2 0 Erv1 / Alr family Elf1 PF05129.8 gi|352681796|ref|YP_004892320.1| - 0.39 10.4 4.5 9.4 6.0 0.1 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|352681796|ref|YP_004892320.1| - 0.45 10.2 2.3 2.1 8.0 0.0 2.3 2 1 0 2 2 2 0 Putative transposase DNA-binding domain Tnp_zf-ribbon_2 PF13842.1 gi|352681796|ref|YP_004892320.1| - 2.6 8.5 5.3 7.3 7.0 0.2 2.4 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Ribosomal_S27e PF01667.12 gi|352681797|ref|YP_004892321.1| - 1.1e-26 92.1 0.6 1.2e-26 91.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|352681797|ref|YP_004892321.1| - 0.00072 18.8 0.9 0.00093 18.4 0.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|352681797|ref|YP_004892321.1| - 0.001 18.1 0.5 0.2 10.8 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF3797 PF12677.2 gi|352681797|ref|YP_004892321.1| - 0.0011 18.5 0.6 0.016 14.8 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) zinc_ribbon_6 PF14599.1 gi|352681797|ref|YP_004892321.1| - 0.01 15.5 0.1 0.013 15.2 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon DNA_ligase_ZBD PF03119.11 gi|352681797|ref|YP_004892321.1| - 0.018 14.7 1.9 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_5 PF13719.1 gi|352681797|ref|YP_004892321.1| - 0.025 14.1 1.6 0.82 9.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|352681797|ref|YP_004892321.1| - 0.027 14.4 0.9 0.048 13.6 0.6 1.4 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|352681797|ref|YP_004892321.1| - 0.035 13.7 0.2 0.042 13.5 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2 PF00096.21 gi|352681797|ref|YP_004892321.1| - 0.039 14.2 0.5 1.2 9.5 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type TFIIS_C PF01096.13 gi|352681797|ref|YP_004892321.1| - 0.052 13.1 1.6 0.74 9.5 1.1 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|352681797|ref|YP_004892321.1| - 0.056 12.9 1.7 0.49 9.9 1.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|352681797|ref|YP_004892321.1| - 0.061 13.2 2.2 4.6 7.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) IBR PF01485.16 gi|352681797|ref|YP_004892321.1| - 0.065 13.1 0.1 0.077 12.8 0.0 1.1 1 0 0 1 1 1 0 IBR domain Lar_restr_allev PF14354.1 gi|352681797|ref|YP_004892321.1| - 0.075 13.3 0.7 0.14 12.4 0.5 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Sgf11 PF08209.6 gi|352681797|ref|YP_004892321.1| - 0.078 12.3 2.1 2.2 7.6 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn_Tnp_IS1595 PF12760.2 gi|352681797|ref|YP_004892321.1| - 0.082 12.7 1.3 0.12 12.1 0.9 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352681797|ref|YP_004892321.1| - 0.093 12.4 2.9 1.1 8.9 0.0 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|352681797|ref|YP_004892321.1| - 0.1 12.6 0.5 1.9 8.6 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Desulfoferrod_N PF06397.7 gi|352681797|ref|YP_004892321.1| - 0.18 11.2 7.0 2.8 7.3 0.6 3.0 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain Rubredoxin PF00301.15 gi|352681797|ref|YP_004892321.1| - 0.18 11.6 0.6 5 7.0 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin DUF164 PF02591.10 gi|352681797|ref|YP_004892321.1| - 0.22 11.3 1.4 7.1 6.5 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-NADH-PPase PF09297.6 gi|352681797|ref|YP_004892321.1| - 0.32 10.5 1.5 1.2 8.6 0.2 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|352681797|ref|YP_004892321.1| - 1.1 8.3 4.1 3.1 6.9 0.2 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com DNA_RNApol_7kD PF03604.8 gi|352681797|ref|YP_004892321.1| - 1.5 8.3 5.1 28 4.2 3.5 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DNA_primase_S PF01896.14 gi|352681799|ref|YP_004892323.1| - 2.9e-20 72.5 0.0 4.6e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit PCNA_C PF02747.10 gi|352681800|ref|YP_004892324.1| - 2.7e-12 46.7 0.4 8.7e-12 45.0 0.1 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|352681800|ref|YP_004892324.1| - 1.4e-10 40.8 0.0 1.5e-09 37.4 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|352681800|ref|YP_004892324.1| - 3.4e-06 26.3 0.0 4.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.11 gi|352681800|ref|YP_004892324.1| - 0.00014 20.7 0.0 0.0025 16.6 0.0 2.1 1 1 0 2 2 2 1 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta PF00712.14 gi|352681800|ref|YP_004892324.1| - 0.016 15.0 0.1 0.17 11.7 0.0 2.4 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain DUF4349 PF14257.1 gi|352681800|ref|YP_004892324.1| - 0.024 13.8 0.1 0.42 9.7 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4349) CusF_Ec PF11604.3 gi|352681800|ref|YP_004892324.1| - 0.065 13.0 0.1 0.43 10.4 0.0 2.4 2 0 0 2 2 2 0 Copper binding periplasmic protein CusF PepSY PF03413.14 gi|352681800|ref|YP_004892324.1| - 4.6 7.9 9.7 4.4 8.0 2.3 3.1 2 1 1 3 3 3 0 Peptidase propeptide and YPEB domain TFIIS_C PF01096.13 gi|352681801|ref|YP_004892325.1| - 2.8e-22 78.0 8.7 7.3e-21 73.5 2.9 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|352681801|ref|YP_004892325.1| - 6.8e-09 35.3 3.0 1.4e-05 24.8 0.7 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|352681801|ref|YP_004892325.1| - 1.2e-07 31.2 11.5 4.2e-07 29.5 0.1 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|352681801|ref|YP_004892325.1| - 4.9e-07 29.4 4.4 0.0071 16.1 0.1 2.3 2 1 0 2 2 2 2 Double zinc ribbon DUF2387 PF09526.5 gi|352681801|ref|YP_004892325.1| - 3.5e-06 26.8 2.0 0.011 15.6 0.6 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zf-NADH-PPase PF09297.6 gi|352681801|ref|YP_004892325.1| - 9e-06 25.1 5.3 0.0048 16.3 0.2 3.6 3 1 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|352681801|ref|YP_004892325.1| - 2.9e-05 23.5 5.7 0.35 10.4 0.1 3.3 3 0 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352681801|ref|YP_004892325.1| - 3.1e-05 23.5 6.3 0.38 10.4 0.2 3.3 3 0 0 3 3 3 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|352681801|ref|YP_004892325.1| - 8.8e-05 22.2 2.7 0.21 11.4 0.4 2.9 2 1 0 2 2 2 2 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|352681801|ref|YP_004892325.1| - 0.00012 21.3 6.4 0.0077 15.5 1.1 2.9 2 1 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|352681801|ref|YP_004892325.1| - 0.00014 21.7 7.2 0.87 9.5 0.0 3.5 3 0 0 3 3 3 1 Zinc ribbon domain zf-TFIIB PF13453.1 gi|352681801|ref|YP_004892325.1| - 0.00016 20.7 9.5 0.0015 17.6 0.1 2.7 2 1 0 2 2 2 1 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.6 gi|352681801|ref|YP_004892325.1| - 0.00032 20.2 5.4 0.15 11.7 1.4 2.8 2 1 1 3 3 3 2 Putative transposase DNA-binding domain zf-DNA_Pol PF08996.5 gi|352681801|ref|YP_004892325.1| - 0.00042 19.7 1.2 0.021 14.1 0.1 2.0 1 1 1 2 2 2 1 DNA Polymerase alpha zinc finger Terminase_GpA PF05876.7 gi|352681801|ref|YP_004892325.1| - 0.00059 18.3 2.0 0.003 15.9 1.0 1.9 2 0 0 2 2 2 1 Phage terminase large subunit (GpA) DUF2082 PF09855.4 gi|352681801|ref|YP_004892325.1| - 0.00059 19.6 5.2 1.9 8.4 0.0 3.2 3 0 0 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rubredoxin PF00301.15 gi|352681801|ref|YP_004892325.1| - 0.00084 19.1 6.5 0.57 10.1 0.0 3.3 3 0 0 3 3 3 1 Rubredoxin Lar_restr_allev PF14354.1 gi|352681801|ref|YP_004892325.1| - 0.0019 18.4 6.1 0.0039 17.4 0.9 2.3 1 1 1 2 2 2 2 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|352681801|ref|YP_004892325.1| - 0.0023 17.0 13.6 0.28 10.4 0.3 4.1 4 0 0 4 4 4 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|352681801|ref|YP_004892325.1| - 0.0026 17.7 8.1 0.81 9.7 0.0 3.8 3 1 1 4 4 4 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|352681801|ref|YP_004892325.1| - 0.0034 16.8 6.1 0.72 9.3 0.1 3.3 3 0 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit DUF1936 PF09151.5 gi|352681801|ref|YP_004892325.1| - 0.005 16.3 10.0 0.015 14.8 0.3 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1936) zf-CHY PF05495.7 gi|352681801|ref|YP_004892325.1| - 0.0055 16.8 1.5 0.16 12.1 0.3 2.2 1 1 1 2 2 2 1 CHY zinc finger zinc_ribbon_2 PF13240.1 gi|352681801|ref|YP_004892325.1| - 0.0065 15.9 16.3 0.54 9.8 0.5 4.0 4 0 0 4 4 4 2 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|352681801|ref|YP_004892325.1| - 0.0076 15.6 7.1 2 7.9 0.1 3.4 3 0 0 3 3 3 1 A2L zinc ribbon domain DUF3797 PF12677.2 gi|352681801|ref|YP_004892325.1| - 0.01 15.4 5.8 0.58 9.8 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) Zn_ribbon_recom PF13408.1 gi|352681801|ref|YP_004892325.1| - 0.016 15.4 4.6 2.5 8.4 1.5 2.7 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF164 PF02591.10 gi|352681801|ref|YP_004892325.1| - 0.03 14.1 0.5 4.6 7.1 0.0 3.0 3 0 0 3 3 3 0 Putative zinc ribbon domain HypA PF01155.14 gi|352681801|ref|YP_004892325.1| - 0.031 13.9 4.9 0.048 13.3 0.7 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Ribosomal_L37e PF01907.14 gi|352681801|ref|YP_004892325.1| - 0.042 13.6 2.6 29 4.5 0.0 3.2 3 0 0 3 3 3 0 Ribosomal protein L37e YhfH PF14149.1 gi|352681801|ref|YP_004892325.1| - 0.044 13.5 2.1 23 4.9 0.1 3.3 3 0 0 3 3 3 0 YhfH-like protein eIF-5_eIF-2B PF01873.12 gi|352681801|ref|YP_004892325.1| - 0.058 13.0 0.2 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 UPF0547 PF10571.4 gi|352681801|ref|YP_004892325.1| - 0.088 12.5 14.4 0.56 9.9 0.1 3.7 3 1 1 4 4 4 0 Uncharacterised protein family UPF0547 DUF2296 PF10058.4 gi|352681801|ref|YP_004892325.1| - 0.091 12.5 6.6 3.1 7.6 1.9 3.0 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) FYDLN_acid PF09538.5 gi|352681801|ref|YP_004892325.1| - 0.095 13.2 6.3 1.3 9.6 0.2 2.8 1 1 2 3 3 2 0 Protein of unknown function (FYDLN_acid) zf-H2C2_2 PF13465.1 gi|352681801|ref|YP_004892325.1| - 0.098 12.9 14.1 3.9 7.9 0.4 3.5 4 0 0 4 4 3 0 Zinc-finger double domain ADK_lid PF05191.9 gi|352681801|ref|YP_004892325.1| - 0.15 11.7 5.5 2 8.1 0.1 3.5 4 0 0 4 4 4 0 Adenylate kinase, active site lid CpXC PF14353.1 gi|352681801|ref|YP_004892325.1| - 0.15 11.9 6.0 1.9 8.4 0.0 2.9 1 1 2 3 3 3 0 CpXC protein Zn_Tnp_IS91 PF14319.1 gi|352681801|ref|YP_004892325.1| - 0.18 11.3 6.3 0.54 9.7 0.6 2.9 1 1 1 3 3 3 0 Transposase zinc-binding domain Baculo_LEF5_C PF11792.3 gi|352681801|ref|YP_004892325.1| - 0.19 11.1 0.2 0.19 11.1 0.1 2.3 2 1 1 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain Fer4_10 PF13237.1 gi|352681801|ref|YP_004892325.1| - 0.26 11.1 3.1 7.4 6.4 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain C1_4 PF07975.7 gi|352681801|ref|YP_004892325.1| - 0.31 11.0 3.5 14 5.8 1.3 3.0 2 1 0 2 2 2 0 TFIIH C1-like domain zf-C2H2_4 PF13894.1 gi|352681801|ref|YP_004892325.1| - 0.34 11.3 4.6 24 5.5 0.0 3.4 3 0 0 3 3 3 0 C2H2-type zinc finger IBR PF01485.16 gi|352681801|ref|YP_004892325.1| - 0.43 10.4 6.9 16 5.4 0.1 2.8 1 1 1 2 2 2 0 IBR domain DUF35_N PF12172.3 gi|352681801|ref|YP_004892325.1| - 0.5 10.3 10.6 15 5.6 0.0 3.7 3 1 0 4 4 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF329 PF03884.9 gi|352681801|ref|YP_004892325.1| - 0.61 9.6 4.9 12 5.5 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF329) Prok-RING_1 PF14446.1 gi|352681801|ref|YP_004892325.1| - 0.62 9.8 4.4 13 5.6 0.1 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.6 gi|352681801|ref|YP_004892325.1| - 0.64 9.8 6.8 2.4 8.0 0.0 3.5 3 1 1 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2 PF00096.21 gi|352681801|ref|YP_004892325.1| - 0.83 10.1 7.7 32 5.1 0.6 3.5 3 0 0 3 3 3 0 Zinc finger, C2H2 type Baculo_ME53 PF06061.6 gi|352681801|ref|YP_004892325.1| - 0.84 8.5 4.3 16 4.3 0.0 2.8 1 1 0 3 3 3 0 Baculoviridae ME53 Ribosomal_S27e PF01667.12 gi|352681801|ref|YP_004892325.1| - 0.9 9.1 5.3 27 4.3 1.9 3.0 2 1 0 2 2 2 0 Ribosomal protein S27 FdhE PF04216.7 gi|352681801|ref|YP_004892325.1| - 0.9 9.1 4.9 0.14 11.8 0.6 1.6 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation Opy2 PF09463.5 gi|352681801|ref|YP_004892325.1| - 1.1 9.3 5.7 7.5 6.7 0.0 3.1 3 0 0 3 3 3 0 Opy2 protein zf-Mss51 PF13824.1 gi|352681801|ref|YP_004892325.1| - 1.6 8.6 5.4 44 4.0 0.0 2.8 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-MYND PF01753.13 gi|352681801|ref|YP_004892325.1| - 2.3 8.1 5.3 14 5.6 1.2 2.6 2 1 0 2 2 2 0 MYND finger DUF4379 PF14311.1 gi|352681801|ref|YP_004892325.1| - 2.6 7.8 6.4 17 5.2 0.8 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4379) zf-trcl PF13451.1 gi|352681801|ref|YP_004892325.1| - 3 7.5 7.5 26 4.5 2.9 2.9 2 1 0 2 2 2 0 Probable zinc-binding domain zf-HIT PF04438.11 gi|352681801|ref|YP_004892325.1| - 3.8 7.2 12.0 23 4.7 0.2 3.4 3 0 0 3 3 3 0 HIT zinc finger DUF1610 PF07754.6 gi|352681801|ref|YP_004892325.1| - 4.9 7.3 20.4 1.2 9.2 0.2 3.6 4 0 0 4 4 3 0 Domain of unknown function (DUF1610) Mut7-C PF01927.11 gi|352681801|ref|YP_004892325.1| - 5.2 7.0 6.1 6.7 6.6 0.7 2.1 1 1 1 2 2 2 0 Mut7-C RNAse domain Tnp_zf-ribbon_2 PF13842.1 gi|352681801|ref|YP_004892325.1| - 5.4 7.5 10.7 23 5.4 0.1 3.3 2 1 1 3 3 3 0 DDE_Tnp_1-like zinc-ribbon zf-C4_Topoisom PF01396.14 gi|352681801|ref|YP_004892325.1| - 6.4 6.3 12.7 5.9 6.4 0.1 3.3 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1 PF03811.8 gi|352681801|ref|YP_004892325.1| - 8.6 5.9 9.6 54 3.3 0.0 3.2 2 1 0 2 2 2 0 InsA N-terminal domain Nudix_N_2 PF14803.1 gi|352681801|ref|YP_004892325.1| - 8.6 6.1 10.9 30 4.4 0.3 3.6 3 1 1 4 4 4 0 Nudix N-terminal Sgf11 PF08209.6 gi|352681801|ref|YP_004892325.1| - 9.2 5.6 7.9 11 5.4 0.2 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Auto_anti-p27 PF06677.7 gi|352681801|ref|YP_004892325.1| - 9.4 6.0 11.6 15 5.4 1.3 3.5 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_S19e PF01090.14 gi|352681802|ref|YP_004892326.1| - 3.1e-51 172.4 0.1 3.5e-51 172.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|352681802|ref|YP_004892326.1| - 0.0088 15.6 0.0 0.34 10.5 0.1 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus dsDNA_bind PF01984.15 gi|352681803|ref|YP_004892327.1| - 1.1e-23 83.2 9.9 1.2e-23 83.0 6.9 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SDA1 PF05285.7 gi|352681803|ref|YP_004892327.1| - 0.001 18.4 3.0 0.0013 18.1 2.1 1.2 1 0 0 1 1 1 1 SDA1 FerA PF08165.6 gi|352681803|ref|YP_004892327.1| - 0.06 13.0 2.3 0.22 11.2 1.6 2.0 1 0 0 1 1 1 0 FerA (NUC095) domain FHIPEP PF00771.15 gi|352681803|ref|YP_004892327.1| - 0.2 9.9 2.0 0.24 9.6 1.4 1.0 1 0 0 1 1 1 0 FHIPEP family Herpes_UL25 PF01499.11 gi|352681803|ref|YP_004892327.1| - 0.88 7.7 5.9 0.88 7.7 4.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family Ribosomal_L39 PF00832.15 gi|352681804|ref|YP_004892328.1| - 6.1e-18 63.9 11.4 7.3e-18 63.7 7.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|352681805|ref|YP_004892329.1| - 1.5e-23 82.2 1.4 1.8e-23 82.0 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e NDUF_B4 PF07225.7 gi|352681805|ref|YP_004892329.1| - 0.016 14.9 1.5 0.02 14.7 1.1 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) Phage_mat-A PF03863.8 gi|352681805|ref|YP_004892329.1| - 0.071 12.1 0.4 0.068 12.2 0.3 1.1 1 0 0 1 1 1 0 Phage maturation protein Cir_Bir_Yir PF06022.6 gi|352681806|ref|YP_004892330.1| - 0.0037 16.5 0.1 0.0044 16.2 0.1 1.1 1 0 0 1 1 1 1 Plasmodium variant antigen protein Cir/Yir/Bir NusB PF01029.13 gi|352681806|ref|YP_004892330.1| - 0.031 14.2 0.4 0.066 13.1 0.3 1.7 1 1 0 1 1 1 0 NusB family B56 PF01603.15 gi|352681806|ref|YP_004892330.1| - 0.044 12.3 0.4 0.085 11.4 0.1 1.5 1 1 1 2 2 2 0 Protein phosphatase 2A regulatory B subunit (B56 family) DUF1759 PF03564.10 gi|352681806|ref|YP_004892330.1| - 0.11 12.3 0.5 0.17 11.6 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1759) Helicase_C_2 PF13307.1 gi|352681807|ref|YP_004892331.1| - 1.1e-14 54.7 0.0 1.9e-14 53.9 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|352681807|ref|YP_004892331.1| - 1.4e-07 31.1 0.1 2.4e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|352681807|ref|YP_004892331.1| - 4.9e-05 23.2 0.5 0.0024 17.7 0.1 2.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|352681807|ref|YP_004892331.1| - 0.0056 16.3 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|352681807|ref|YP_004892331.1| - 0.016 15.4 0.1 0.43 10.7 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|352681807|ref|YP_004892331.1| - 0.035 14.2 0.1 12 6.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|352681808|ref|YP_004892332.1| - 2.5e-09 37.0 0.9 0.00041 19.8 0.2 2.2 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|352681808|ref|YP_004892332.1| - 2.9e-09 37.0 2.0 6.2e-09 36.0 1.4 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|352681808|ref|YP_004892332.1| - 3.1e-05 24.7 0.5 8.4e-05 23.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|352681808|ref|YP_004892332.1| - 9.4e-05 22.7 0.4 0.00029 21.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|352681808|ref|YP_004892332.1| - 0.00024 21.2 1.0 0.003 17.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain IPT PF01745.11 gi|352681808|ref|YP_004892332.1| - 0.00028 20.1 0.5 0.00049 19.3 0.0 1.6 2 0 0 2 2 2 1 Isopentenyl transferase TrwB_AAD_bind PF10412.4 gi|352681808|ref|YP_004892332.1| - 0.00029 19.5 0.1 0.093 11.3 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|352681808|ref|YP_004892332.1| - 0.00073 19.4 3.7 0.0067 16.3 0.1 2.4 1 1 0 2 2 2 1 AAA domain CobU PF02283.11 gi|352681808|ref|YP_004892332.1| - 0.0054 16.1 0.1 0.027 13.8 0.0 2.0 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase T4SS-DNA_transf PF02534.9 gi|352681808|ref|YP_004892332.1| - 0.018 13.6 0.3 1.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA PF00004.24 gi|352681808|ref|YP_004892332.1| - 0.029 14.5 1.1 0.11 12.7 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|352681808|ref|YP_004892332.1| - 0.052 13.2 1.5 0.17 11.6 0.0 2.4 2 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|352681808|ref|YP_004892332.1| - 0.15 11.7 9.8 4.8 6.8 6.8 2.2 1 1 0 1 1 1 0 Archaeal ATPase DUF845 PF05820.6 gi|352681808|ref|YP_004892332.1| - 0.18 11.5 3.5 0.39 10.4 0.7 2.2 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF845) Glyco_hydro_4 PF02056.11 gi|352681809|ref|YP_004892333.1| - 0.029 13.7 0.1 0.031 13.5 0.0 1.1 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase DUF1987 PF09345.5 gi|352681809|ref|YP_004892333.1| - 0.034 13.9 1.3 0.037 13.8 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1987) Plasmodium_Vir PF05795.6 gi|352681809|ref|YP_004892333.1| - 1.9 7.5 14.4 2 7.5 10.0 1.0 1 0 0 1 1 1 0 Plasmodium vivax Vir protein Peptidase_M48 PF01435.13 gi|352681811|ref|YP_004892335.1| - 3e-19 69.4 0.1 4.1e-19 69.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 FYVE PF01363.16 gi|352681813|ref|YP_004892337.1| - 0.00022 21.0 2.7 0.00022 21.0 1.9 1.1 1 0 0 1 1 1 1 FYVE zinc finger DUF1272 PF06906.6 gi|352681813|ref|YP_004892337.1| - 0.00031 20.5 1.1 0.00041 20.1 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-HIT PF04438.11 gi|352681813|ref|YP_004892337.1| - 0.0025 17.4 3.9 0.0025 17.4 2.7 2.8 1 1 1 2 2 2 1 HIT zinc finger zf-C3HC4_3 PF13920.1 gi|352681813|ref|YP_004892337.1| - 0.0044 16.6 5.9 0.012 15.2 4.1 1.6 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Elf1 PF05129.8 gi|352681813|ref|YP_004892337.1| - 0.0049 16.5 0.6 0.0062 16.2 0.4 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like C1_1 PF00130.17 gi|352681813|ref|YP_004892337.1| - 0.018 14.7 2.4 0.024 14.3 1.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_5 PF14634.1 gi|352681813|ref|YP_004892337.1| - 0.032 13.9 7.3 0.05 13.3 5.0 1.3 1 1 0 1 1 1 0 zinc-RING finger domain zf-C3HC4_2 PF13923.1 gi|352681813|ref|YP_004892337.1| - 0.036 14.1 7.2 0.12 12.4 5.1 1.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.7 gi|352681813|ref|YP_004892337.1| - 0.058 13.1 3.4 0.46 10.2 2.4 2.0 1 1 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.1 gi|352681813|ref|YP_004892337.1| - 0.065 12.9 4.5 0.2 11.3 0.2 2.7 2 1 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|352681813|ref|YP_004892337.1| - 0.44 9.8 4.9 0.56 9.4 0.7 2.5 2 1 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|352681813|ref|YP_004892337.1| - 0.51 9.7 3.6 1.4 8.3 1.4 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|352681813|ref|YP_004892337.1| - 0.6 9.8 4.7 2.6 7.8 3.3 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|352681813|ref|YP_004892337.1| - 0.72 9.7 4.6 2.3 8.1 1.6 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-CCHC PF00098.18 gi|352681813|ref|YP_004892337.1| - 0.91 9.5 9.2 2.1 8.4 0.0 2.9 3 0 0 3 3 3 0 Zinc knuckle Prim_Zn_Ribbon PF08273.7 gi|352681813|ref|YP_004892337.1| - 0.94 9.6 5.9 0.5 10.4 2.1 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Carb_bind PF10645.4 gi|352681813|ref|YP_004892337.1| - 1.2 8.9 3.9 5.2 6.9 2.7 1.9 1 1 0 1 1 1 0 Carbohydrate binding zf-C3HC4 PF00097.20 gi|352681813|ref|YP_004892337.1| - 1.5 8.4 7.0 10 5.9 4.9 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_2 PF13639.1 gi|352681813|ref|YP_004892337.1| - 2.4 8.0 6.2 4.1 7.3 4.3 1.4 1 1 0 1 1 1 0 Ring finger domain DUF35_N PF12172.3 gi|352681813|ref|YP_004892337.1| - 3.7 7.5 8.3 47 4.0 5.7 2.6 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_recom PF13408.1 gi|352681813|ref|YP_004892337.1| - 5.3 7.3 13.5 36 4.7 9.4 2.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain IBR PF01485.16 gi|352681813|ref|YP_004892337.1| - 6.1 6.7 7.7 14 5.6 5.4 1.6 1 1 0 1 1 1 0 IBR domain Ribosomal_L37e PF01907.14 gi|352681813|ref|YP_004892337.1| - 9.3 6.1 8.8 9 6.1 3.3 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e NTP_transferase PF00483.18 gi|352681815|ref|YP_004892339.1| - 9.5e-43 146.2 0.0 1.1e-42 146.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|352681815|ref|YP_004892339.1| - 2.2e-12 45.8 3.5 0.0014 17.9 0.0 4.3 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|352681815|ref|YP_004892339.1| - 3.2e-12 46.8 0.1 4.4e-12 46.3 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|352681815|ref|YP_004892339.1| - 0.011 15.2 3.9 1.3 8.6 0.0 3.4 3 1 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase CTP_transf_3 PF02348.14 gi|352681815|ref|YP_004892339.1| - 0.041 13.5 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase HIT PF01230.18 gi|352681818|ref|YP_004892342.1| - 6.2e-12 45.9 0.0 8.1e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|352681818|ref|YP_004892342.1| - 0.00038 20.6 0.0 0.00056 20.1 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|352681818|ref|YP_004892342.1| - 0.0036 16.9 0.0 0.01 15.4 0.0 1.7 1 1 1 2 2 2 1 Protein similar to CwfJ C-terminus 1 HhH-GPD PF00730.20 gi|352681818|ref|YP_004892342.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein DUF3940 PF13076.1 gi|352681818|ref|YP_004892342.1| - 0.4 10.2 2.8 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3940) AAA_21 PF13304.1 gi|352681819|ref|YP_004892343.1| - 1.3e-05 25.2 0.0 0.0013 18.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|352681819|ref|YP_004892343.1| - 0.0002 20.7 0.0 0.00058 19.3 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|352681819|ref|YP_004892343.1| - 0.00099 18.4 0.0 0.0084 15.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|352681819|ref|YP_004892343.1| - 0.0016 18.8 0.0 0.0021 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352681819|ref|YP_004892343.1| - 0.004 17.3 0.0 0.67 10.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain DUF2813 PF11398.3 gi|352681819|ref|YP_004892343.1| - 0.0071 15.4 0.1 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) MMR_HSR1 PF01926.18 gi|352681819|ref|YP_004892343.1| - 0.026 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|352681819|ref|YP_004892343.1| - 0.033 13.6 0.0 0.082 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|352681819|ref|YP_004892343.1| - 0.056 13.1 0.0 0.19 11.4 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_16 PF13191.1 gi|352681819|ref|YP_004892343.1| - 0.084 12.8 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain PIN PF01850.16 gi|352681820|ref|YP_004892344.1| - 0.00014 22.2 0.0 0.00019 21.7 0.0 1.3 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|352681820|ref|YP_004892344.1| - 0.0015 18.6 0.0 0.0045 17.0 0.0 1.8 1 1 0 1 1 1 1 PIN domain SHS2_Rpb7-N PF03876.12 gi|352681821|ref|YP_004892345.1| - 2.2e-15 56.5 0.0 3.9e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|352681821|ref|YP_004892345.1| - 3e-06 27.2 0.6 4.7e-06 26.5 0.4 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|352681821|ref|YP_004892345.1| - 0.002 18.3 0.1 0.017 15.3 0.0 2.1 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|352681822|ref|YP_004892346.1| - 1.8e-18 66.2 0.3 2.2e-18 65.9 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.1 gi|352681822|ref|YP_004892346.1| - 0.00011 21.5 3.1 0.00019 20.8 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352681822|ref|YP_004892346.1| - 0.00024 20.2 2.3 0.00038 19.5 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|352681822|ref|YP_004892346.1| - 0.00034 20.3 1.2 0.00039 20.1 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|352681822|ref|YP_004892346.1| - 0.00039 20.0 2.4 0.00059 19.4 1.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|352681822|ref|YP_004892346.1| - 0.00066 18.9 0.7 0.0069 15.6 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|352681822|ref|YP_004892346.1| - 0.0022 17.6 0.5 0.0035 17.0 0.3 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RING_4 PF14570.1 gi|352681822|ref|YP_004892346.1| - 0.012 15.2 1.1 0.018 14.6 0.7 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain NRDD PF13597.1 gi|352681822|ref|YP_004892346.1| - 0.09 10.8 0.3 0.1 10.6 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-tcix PF14952.1 gi|352681822|ref|YP_004892346.1| - 0.19 11.0 3.3 6.6 6.1 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF2072 PF09845.4 gi|352681822|ref|YP_004892346.1| - 0.25 11.2 1.6 0.74 9.7 0.7 1.8 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Sgf11 PF08209.6 gi|352681822|ref|YP_004892346.1| - 0.4 10.0 2.1 5.4 6.4 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.8 gi|352681822|ref|YP_004892346.1| - 0.69 9.4 3.3 1.9 8.0 2.3 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit GATA PF00320.22 gi|352681822|ref|YP_004892346.1| - 0.82 9.0 5.9 0.2 11.0 0.9 2.0 2 0 0 2 2 2 0 GATA zinc finger RRN7 PF11781.3 gi|352681822|ref|YP_004892346.1| - 0.89 9.1 2.9 1.4 8.4 0.1 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|352681822|ref|YP_004892346.1| - 1.2 8.6 5.9 13 5.3 4.1 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF3797 PF12677.2 gi|352681822|ref|YP_004892346.1| - 1.6 8.4 7.2 1.5 8.5 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1595 PF12760.2 gi|352681822|ref|YP_004892346.1| - 1.9 8.3 4.4 2 8.2 1.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|352681822|ref|YP_004892346.1| - 2.7 7.7 5.3 1.1 8.9 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|352681822|ref|YP_004892346.1| - 2.9 7.9 7.3 5.3 7.0 3.9 2.2 2 1 1 3 3 2 0 Zinc ribbon domain DUF4522 PF15022.1 gi|352681823|ref|YP_004892347.1| - 0.016 14.9 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4522) DUF4093 PF13331.1 gi|352681823|ref|YP_004892347.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4093) Laminin_G_3 PF13385.1 gi|352681824|ref|YP_004892348.1| - 2 8.6 15.8 0.37 11.0 4.0 3.9 2 1 1 3 3 3 0 Concanavalin A-like lectin/glucanases superfamily Arabinose_Iso_C PF11762.3 gi|352681825|ref|YP_004892349.1| - 0.0071 15.8 0.0 0.026 14.0 0.0 1.9 2 0 0 2 2 2 1 L-arabinose isomerase C-terminal domain SIS PF01380.17 gi|352681826|ref|YP_004892350.1| - 4.7e-46 155.6 2.2 2e-27 95.3 0.5 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|352681826|ref|YP_004892350.1| - 2.6e-27 95.4 0.1 6.5e-27 94.1 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|352681826|ref|YP_004892350.1| - 3.4e-23 81.9 0.2 1.5e-17 63.3 0.1 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|352681826|ref|YP_004892350.1| - 5.8e-21 74.5 0.0 1.4e-20 73.3 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|352681826|ref|YP_004892350.1| - 1.8e-07 30.9 0.9 2.6e-05 23.9 0.1 3.1 2 1 1 3 3 3 1 SIS domain GATase_4 PF13230.1 gi|352681826|ref|YP_004892350.1| - 3.4e-07 29.2 0.0 5.1e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II CPSase_L_chain PF00289.17 gi|352681826|ref|YP_004892350.1| - 0.081 13.0 0.2 0.24 11.5 0.1 1.8 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Hexapep PF00132.19 gi|352681827|ref|YP_004892351.1| - 4e-12 45.0 3.5 1.6e-06 27.3 0.1 4.9 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|352681827|ref|YP_004892351.1| - 0.0035 16.8 1.5 0.25 10.9 0.0 3.6 2 1 1 3 3 3 1 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|352681827|ref|YP_004892351.1| - 0.0098 15.9 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 1 MobA-like NTP transferase domain 4HBT PF03061.17 gi|352681828|ref|YP_004892352.1| - 1.5e-27 95.5 1.1 1.4e-14 53.9 0.0 2.3 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|352681828|ref|YP_004892352.1| - 8.1e-05 23.0 0.0 0.0066 16.8 0.0 2.2 1 1 0 2 2 2 1 Thioesterase-like superfamily MaoC_dehydratas PF01575.14 gi|352681828|ref|YP_004892352.1| - 0.0046 16.3 0.1 0.29 10.5 0.0 2.3 2 0 0 2 2 2 2 MaoC like domain DeoC PF01791.4 gi|352681829|ref|YP_004892353.1| - 3.8e-52 176.9 1.4 4.3e-52 176.7 1.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|352681829|ref|YP_004892353.1| - 0.0017 17.3 1.2 0.0025 16.8 0.8 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase PHO4 PF01384.15 gi|352681830|ref|YP_004892354.1| - 0.023 13.3 13.5 0.18 10.3 5.6 3.2 1 1 1 2 2 2 0 Phosphate transporter family SRP54 PF00448.17 gi|352681831|ref|YP_004892355.1| - 7.7e-65 218.0 0.3 1.1e-64 217.5 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|352681831|ref|YP_004892355.1| - 2e-28 98.6 1.0 8.5e-28 96.6 0.6 2.2 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|352681831|ref|YP_004892355.1| - 1.1e-08 35.0 0.1 1.1e-07 31.7 0.0 2.8 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|352681831|ref|YP_004892355.1| - 3.7e-06 27.1 0.0 2.2e-05 24.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352681831|ref|YP_004892355.1| - 0.00013 21.6 0.9 0.025 14.3 0.0 3.6 3 0 0 3 3 3 1 Part of AAA domain AAA_10 PF12846.2 gi|352681831|ref|YP_004892355.1| - 0.00042 19.8 0.0 0.0017 17.8 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|352681831|ref|YP_004892355.1| - 0.0021 18.1 0.1 0.0066 16.4 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.14 gi|352681831|ref|YP_004892355.1| - 0.0033 16.8 1.9 0.033 13.6 1.3 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|352681831|ref|YP_004892355.1| - 0.0039 17.0 0.0 0.0087 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352681831|ref|YP_004892355.1| - 0.0039 17.9 0.0 0.013 16.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|352681831|ref|YP_004892355.1| - 0.004 16.8 0.0 0.011 15.4 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|352681831|ref|YP_004892355.1| - 0.0048 16.3 0.4 0.024 14.0 0.3 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.1 gi|352681831|ref|YP_004892355.1| - 0.02 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|352681831|ref|YP_004892355.1| - 0.024 14.2 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase PduV-EutP PF10662.4 gi|352681831|ref|YP_004892355.1| - 0.045 13.2 0.4 7.8 5.9 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|352681831|ref|YP_004892355.1| - 0.049 13.0 1.4 0.73 9.2 1.0 2.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|352681831|ref|YP_004892355.1| - 0.058 13.6 0.0 0.49 10.6 0.0 2.3 2 1 0 2 2 2 0 ABC transporter Zeta_toxin PF06414.7 gi|352681831|ref|YP_004892355.1| - 0.06 12.4 0.0 0.12 11.4 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin MipZ PF09140.6 gi|352681831|ref|YP_004892355.1| - 0.077 12.0 0.0 2 7.4 0.0 2.2 1 1 0 1 1 1 0 ATPase MipZ NACHT PF05729.7 gi|352681831|ref|YP_004892355.1| - 0.099 12.2 0.1 0.24 11.0 0.1 1.7 1 0 0 1 1 1 0 NACHT domain KaiC PF06745.8 gi|352681831|ref|YP_004892355.1| - 0.12 11.4 1.0 0.5 9.4 0.1 2.3 2 1 0 2 2 2 0 KaiC G-alpha PF00503.15 gi|352681831|ref|YP_004892355.1| - 0.14 10.8 0.0 0.25 9.9 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit Methyltrn_RNA_2 PF04013.7 gi|352681832|ref|YP_004892356.1| - 1.6e-05 24.5 0.0 2.1e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.12 gi|352681833|ref|YP_004892357.1| - 2.2e-10 40.5 0.2 6e-10 39.1 0.1 1.8 1 0 0 1 1 1 1 THUMP domain OCD_Mu_crystall PF02423.10 gi|352681834|ref|YP_004892358.1| - 1.3e-63 214.7 2.5 2e-63 214.0 1.7 1.2 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|352681834|ref|YP_004892358.1| - 1.5e-06 28.3 0.0 3.8e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|352681834|ref|YP_004892358.1| - 0.035 14.5 0.8 0.065 13.6 0.0 1.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|352681834|ref|YP_004892358.1| - 0.061 13.8 0.1 0.14 12.7 0.0 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF981 PF06168.6 gi|352681835|ref|YP_004892359.1| - 1.1e-38 132.9 15.6 1.2e-38 132.7 10.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) SdpI PF13630.1 gi|352681835|ref|YP_004892359.1| - 1.8 8.3 17.7 0.66 9.7 0.5 3.0 2 1 1 3 3 3 0 SdpI/YhfL protein family ThiI PF02568.9 gi|352681836|ref|YP_004892360.1| - 5.5e-55 185.8 0.0 8.1e-55 185.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|352681836|ref|YP_004892360.1| - 4.9e-19 68.6 0.0 1.2e-18 67.3 0.0 1.7 1 0 0 1 1 1 1 THUMP domain Rhodanese PF00581.15 gi|352681836|ref|YP_004892360.1| - 3.3e-11 43.5 0.0 9.2e-11 42.0 0.0 1.8 1 0 0 1 1 1 1 Rhodanese-like domain QueC PF06508.8 gi|352681836|ref|YP_004892360.1| - 0.00014 21.2 0.1 0.38 9.9 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|352681836|ref|YP_004892360.1| - 0.071 12.6 0.1 0.79 9.1 0.1 2.2 1 1 0 1 1 1 0 PP-loop family PBP PF01161.15 gi|352681837|ref|YP_004892361.1| - 4.5e-36 123.8 0.0 5.3e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF998 PF06197.8 gi|352681837|ref|YP_004892361.1| - 0.28 10.4 5.2 0.56 9.4 3.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF998) MFS_1 PF07690.11 gi|352681838|ref|YP_004892362.1| - 1.1e-34 119.7 73.2 1.1e-34 119.7 50.8 3.9 1 1 0 2 2 2 1 Major Facilitator Superfamily Aminotran_3 PF00202.16 gi|352681839|ref|YP_004892363.1| - 7.5e-90 301.1 0.0 9.1e-90 300.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|352681839|ref|YP_004892363.1| - 2.4e-05 23.4 0.0 4.5e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II CN_hydrolase PF00795.17 gi|352681840|ref|YP_004892364.1| - 9e-14 51.2 0.0 1.2e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase NAD_synthase PF02540.12 gi|352681841|ref|YP_004892365.1| - 4.5e-75 251.6 0.0 5.2e-75 251.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|352681841|ref|YP_004892365.1| - 7.9e-06 25.5 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|352681841|ref|YP_004892365.1| - 2e-05 23.2 0.1 0.002 16.7 0.0 2.4 3 0 0 3 3 3 2 tRNA methyl transferase Sigma70_r4 PF04545.11 gi|352681841|ref|YP_004892365.1| - 0.0012 18.0 0.1 0.01 15.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 ThiI PF02568.9 gi|352681841|ref|YP_004892365.1| - 0.027 13.9 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|352681841|ref|YP_004892365.1| - 0.055 12.7 0.0 0.11 11.7 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC GATase_6 PF13522.1 gi|352681842|ref|YP_004892366.1| - 1.4e-11 44.4 0.0 2.2e-11 43.8 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|352681842|ref|YP_004892366.1| - 8.2e-09 34.5 0.0 1.3e-06 27.3 0.0 2.3 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|352681842|ref|YP_004892366.1| - 9.3e-05 21.2 0.0 0.00012 20.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|352681842|ref|YP_004892366.1| - 0.0052 16.5 0.0 0.0097 15.6 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase domain Gln-synt_C PF00120.19 gi|352681843|ref|YP_004892367.1| - 1.9e-79 266.4 0.0 2.4e-79 266.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|352681843|ref|YP_004892367.1| - 1.8e-12 46.6 0.0 3.2e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glu_synthase PF01645.12 gi|352681844|ref|YP_004892368.1| - 1.7e-96 323.3 4.4 3.5e-91 305.8 0.9 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|352681844|ref|YP_004892368.1| - 1.3e-12 47.2 7.2 0.0036 16.2 0.0 4.2 4 1 0 4 4 4 3 FMN-dependent dehydrogenase Glu_syn_central PF04898.9 gi|352681844|ref|YP_004892368.1| - 0.0054 16.0 0.3 0.61 9.2 0.0 3.0 3 0 0 3 3 3 1 Glutamate synthase central domain DHO_dh PF01180.16 gi|352681844|ref|YP_004892368.1| - 0.037 12.9 5.9 1.1 8.1 0.0 3.3 3 1 0 3 3 3 0 Dihydroorotate dehydrogenase GXGXG PF01493.14 gi|352681845|ref|YP_004892369.1| - 2e-25 88.9 20.3 1.8e-19 69.5 6.5 2.2 1 1 1 2 2 2 2 GXGXG motif GATase_6 PF13522.1 gi|352681845|ref|YP_004892369.1| - 7e-23 81.0 0.0 1.2e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|352681845|ref|YP_004892369.1| - 2.6e-14 52.7 0.0 2.8e-12 46.0 0.0 2.8 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|352681845|ref|YP_004892369.1| - 9.2e-13 48.0 0.0 1.5e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain PadR PF03551.9 gi|352681846|ref|YP_004892370.1| - 1.1e-21 76.4 0.4 2.1e-21 75.4 0.3 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|352681846|ref|YP_004892370.1| - 2.6e-07 30.5 0.1 7e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|352681846|ref|YP_004892370.1| - 0.00049 20.0 0.0 0.00095 19.0 0.0 1.5 1 1 0 1 1 1 1 Replication-relaxation HTH_45 PF14947.1 gi|352681846|ref|YP_004892370.1| - 0.0026 17.5 0.6 0.0069 16.1 0.0 2.0 2 1 0 2 2 2 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|352681846|ref|YP_004892370.1| - 0.0049 16.5 0.0 16 5.2 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Phage_pRha PF09669.5 gi|352681846|ref|YP_004892370.1| - 0.0088 16.3 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 Phage regulatory protein Rha (Phage_pRha) Mrr_N PF14338.1 gi|352681846|ref|YP_004892370.1| - 0.013 15.5 0.3 1.9 8.5 0.0 2.9 3 0 0 3 3 3 0 Mrr N-terminal domain TrmB PF01978.14 gi|352681846|ref|YP_004892370.1| - 0.024 14.3 0.5 0.23 11.1 0.3 2.2 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|352681846|ref|YP_004892370.1| - 0.08 12.7 0.0 0.64 9.9 0.0 2.1 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HxlR PF01638.12 gi|352681846|ref|YP_004892370.1| - 0.14 11.8 0.4 0.42 10.2 0.1 1.9 2 1 0 2 2 2 0 HxlR-like helix-turn-helix NPCBM_assoc PF10633.4 gi|352681847|ref|YP_004892371.1| - 8e-16 57.8 15.0 1.4e-05 25.0 0.3 6.9 6 0 0 6 6 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|352681847|ref|YP_004892371.1| - 2.6e-07 30.5 0.3 2.6e-07 30.5 0.2 5.5 5 1 0 6 6 6 1 Domain of unknown function DUF11 CARDB PF07705.6 gi|352681847|ref|YP_004892371.1| - 0.027 14.5 5.7 0.76 9.8 0.2 4.2 5 0 0 5 5 5 0 CARDB E1_DerP2_DerF2 PF02221.10 gi|352681847|ref|YP_004892371.1| - 0.053 13.7 0.1 88 3.3 0.0 4.0 3 0 0 3 3 3 0 ML domain TRAP_beta PF05753.9 gi|352681847|ref|YP_004892371.1| - 0.1 11.7 2.4 12 4.9 0.1 3.9 3 1 0 3 3 3 0 Translocon-associated protein beta (TRAPB) Transglut_C PF00927.17 gi|352681847|ref|YP_004892371.1| - 0.12 12.4 0.5 85 3.2 0.0 3.7 3 0 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain TrmB PF01978.14 gi|352681849|ref|YP_004892373.1| - 0.00019 21.0 0.1 0.00036 20.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|352681849|ref|YP_004892373.1| - 0.014 15.0 0.0 0.039 13.6 0.0 1.8 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|352681849|ref|YP_004892373.1| - 0.09 12.4 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 MarR family rpo132 PF12415.3 gi|352681849|ref|YP_004892373.1| - 0.13 11.1 0.6 0.28 10.1 0.4 1.6 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase DsrC PF04358.8 gi|352681850|ref|YP_004892374.1| - 1.8e-32 111.8 0.0 2e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein Glutaredoxin PF00462.19 gi|352681850|ref|YP_004892374.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin LexA_DNA_bind PF01726.11 gi|352681850|ref|YP_004892374.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain DUF1641 PF07849.6 gi|352681851|ref|YP_004892375.1| - 2.5e-15 55.8 3.7 5.4e-11 41.9 0.0 3.6 4 0 0 4 4 4 3 Protein of unknown function (DUF1641) Spore_YtrH PF14034.1 gi|352681851|ref|YP_004892375.1| - 0.11 12.4 0.3 0.18 11.7 0.2 1.3 1 0 0 1 1 1 0 Sporulation protein YtrH eIF-1a PF01176.14 gi|352681852|ref|YP_004892376.1| - 5e-26 89.9 0.4 6.1e-26 89.6 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF1348 PF07080.6 gi|352681852|ref|YP_004892376.1| - 0.017 14.9 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1348) TOBE PF03459.12 gi|352681852|ref|YP_004892376.1| - 0.067 13.3 0.0 0.092 12.8 0.0 1.2 1 0 0 1 1 1 0 TOBE domain Glu_synthase PF01645.12 gi|352681853|ref|YP_004892377.1| - 5.5e-24 84.7 5.0 5.2e-23 81.5 2.4 2.6 1 1 1 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|352681853|ref|YP_004892377.1| - 2.7e-19 69.2 3.2 1.4e-14 53.7 0.6 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|352681853|ref|YP_004892377.1| - 0.00017 20.8 0.5 0.00027 20.1 0.4 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase tRNA-synt_2 PF00152.15 gi|352681854|ref|YP_004892378.1| - 1.6e-58 198.0 0.0 2.7e-58 197.3 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) DUF615 PF04751.9 gi|352681854|ref|YP_004892378.1| - 0.12 12.0 0.0 4.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF615) DrsE_2 PF13686.1 gi|352681855|ref|YP_004892379.1| - 2.9e-17 62.8 2.4 1.5e-16 60.4 1.7 1.8 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|352681855|ref|YP_004892379.1| - 4.8e-07 29.8 0.0 9.8e-07 28.8 0.0 1.5 1 1 0 1 1 1 1 DsrE/DsrF-like family SUD-M PF11633.3 gi|352681855|ref|YP_004892379.1| - 0.076 12.2 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 Single-stranded poly(A) binding domain TusA PF01206.12 gi|352681856|ref|YP_004892380.1| - 1.2e-18 66.5 0.0 1.3e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.9 gi|352681857|ref|YP_004892381.1| - 1e-13 51.6 0.0 2.5e-13 50.3 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352681857|ref|YP_004892381.1| - 1.2e-05 24.3 0.1 0.014 14.3 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|352681857|ref|YP_004892381.1| - 9.8e-05 21.3 0.3 0.016 14.1 0.0 2.4 3 0 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|352681857|ref|YP_004892381.1| - 0.00024 19.6 0.0 0.0094 14.4 0.1 2.7 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|352681857|ref|YP_004892381.1| - 0.0003 20.9 0.0 1 9.3 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352681857|ref|YP_004892381.1| - 0.00031 20.5 0.0 0.93 9.2 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|352681857|ref|YP_004892381.1| - 0.0028 16.5 0.0 0.0041 16.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|352681857|ref|YP_004892381.1| - 0.0031 17.5 0.0 0.009 16.0 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|352681857|ref|YP_004892381.1| - 0.0036 17.6 0.1 3.1 8.2 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|352681857|ref|YP_004892381.1| - 0.012 14.7 0.0 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.1 gi|352681857|ref|YP_004892381.1| - 0.018 15.2 0.0 0.042 14.0 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|352681857|ref|YP_004892381.1| - 0.022 13.7 0.0 2.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein IlvN PF07991.7 gi|352681857|ref|YP_004892381.1| - 0.14 11.5 0.1 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF1641 PF07849.6 gi|352681858|ref|YP_004892382.1| - 2.8e-05 23.6 0.0 0.00011 21.7 0.0 2.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) DUF4126 PF13548.1 gi|352681858|ref|YP_004892382.1| - 0.09 12.2 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4126) GyrI-like PF06445.10 gi|352681859|ref|YP_004892383.1| - 8.3e-08 32.4 0.0 9.6e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain SfsA PF03749.8 gi|352681860|ref|YP_004892384.1| - 9.8e-50 168.9 0.0 1.3e-49 168.6 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein AAA_assoc_C PF09821.4 gi|352681862|ref|YP_004892386.1| - 9.8e-15 54.8 0.1 1.5e-14 54.2 0.1 1.4 1 0 0 1 1 1 1 C-terminal AAA-associated domain Mrr_N PF14338.1 gi|352681862|ref|YP_004892386.1| - 0.092 12.8 0.2 17 5.5 0.0 2.5 2 1 1 3 3 3 0 Mrr N-terminal domain THUMP PF02926.12 gi|352681863|ref|YP_004892387.1| - 7.6e-14 51.8 0.0 9.2e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 THUMP domain Abhydrolase_6 PF12697.2 gi|352681864|ref|YP_004892388.1| - 7.5e-22 78.3 0.3 6.1e-12 45.9 0.1 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|352681864|ref|YP_004892388.1| - 5.1e-15 55.5 0.0 6e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|352681864|ref|YP_004892388.1| - 1.3e-07 31.3 0.0 0.00022 20.8 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|352681864|ref|YP_004892388.1| - 0.027 14.3 0.0 0.42 10.5 0.0 2.1 2 0 0 2 2 2 0 TAP-like protein MS_channel PF00924.13 gi|352681865|ref|YP_004892389.1| - 9.5e-15 54.4 5.5 1.7e-14 53.6 3.8 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel Methyltransf_11 PF08241.7 gi|352681866|ref|YP_004892390.1| - 1.3e-16 60.8 0.2 5e-16 58.9 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352681866|ref|YP_004892390.1| - 1.9e-13 50.2 0.0 3.7e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352681866|ref|YP_004892390.1| - 6.6e-12 45.7 0.1 1.3e-11 44.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352681866|ref|YP_004892390.1| - 2.7e-11 43.4 0.0 6.9e-11 42.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352681866|ref|YP_004892390.1| - 2.6e-08 34.4 1.9 1.6e-07 31.9 0.4 2.2 2 0 0 2 2 2 1 Methyltransferase domain Nitro_FeMo-Co PF02579.12 gi|352681866|ref|YP_004892390.1| - 2.8e-08 33.7 0.1 5.7e-08 32.7 0.1 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Methyltransf_25 PF13649.1 gi|352681866|ref|YP_004892390.1| - 6.4e-08 32.8 0.0 6.8e-07 29.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|352681866|ref|YP_004892390.1| - 1.7e-07 30.7 0.0 2.8e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|352681866|ref|YP_004892390.1| - 5.6e-07 29.5 0.4 1.2e-05 25.2 0.0 2.2 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|352681866|ref|YP_004892390.1| - 1.3e-05 24.9 0.5 3.6e-05 23.4 0.3 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.13 gi|352681866|ref|YP_004892390.1| - 2.1e-05 23.7 0.0 3.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|352681866|ref|YP_004892390.1| - 6.6e-05 22.3 0.1 9.9e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW NodS PF05401.6 gi|352681866|ref|YP_004892390.1| - 0.00022 20.6 0.0 0.00033 20.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|352681866|ref|YP_004892390.1| - 0.0032 16.6 0.0 0.0049 16.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|352681866|ref|YP_004892390.1| - 0.0052 15.8 0.0 0.0079 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|352681866|ref|YP_004892390.1| - 0.0089 15.1 0.2 0.013 14.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) ADH_zinc_N PF00107.21 gi|352681866|ref|YP_004892390.1| - 0.02 14.4 0.2 0.81 9.2 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase NIF3 PF01784.13 gi|352681866|ref|YP_004892390.1| - 0.13 11.8 0.1 1.4 8.4 0.0 2.4 2 1 1 3 3 3 0 NIF3 (NGG1p interacting factor 3) Pterin_bind PF00809.17 gi|352681867|ref|YP_004892391.1| - 5.6e-44 150.0 0.2 8.7e-43 146.1 0.1 2.1 1 1 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.11 gi|352681867|ref|YP_004892391.1| - 0.065 11.7 0.1 0.098 11.1 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit Radical_SAM PF04055.16 gi|352681870|ref|YP_004892394.1| - 4.5e-27 95.2 0.0 9.5e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|352681870|ref|YP_004892394.1| - 7.9e-15 54.4 0.0 1.4e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|352681870|ref|YP_004892394.1| - 0.0062 16.3 0.1 0.016 14.9 0.1 1.7 1 0 0 1 1 1 1 TRAM domain tRNA-synt_1g PF09334.6 gi|352681871|ref|YP_004892395.1| - 3.6e-141 470.3 0.0 4.5e-141 470.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|352681871|ref|YP_004892395.1| - 1.2e-12 46.6 0.9 1.6e-06 26.4 0.1 3.5 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|352681871|ref|YP_004892395.1| - 1.5e-10 41.0 0.8 2.6e-10 40.2 0.1 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|352681871|ref|YP_004892395.1| - 2.9e-05 23.3 0.0 0.0061 15.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-ribbon_3 PF13248.1 gi|352681871|ref|YP_004892395.1| - 0.0075 15.4 5.4 0.44 9.8 1.8 3.1 2 1 0 2 2 2 1 zinc-ribbon domain tRNA-synt_1f PF01921.13 gi|352681871|ref|YP_004892395.1| - 0.017 13.8 0.0 0.96 8.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) PDDEXK_1 PF12705.2 gi|352681871|ref|YP_004892395.1| - 0.068 12.5 0.4 0.19 11.0 0.1 1.9 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily DZR PF12773.2 gi|352681871|ref|YP_004892395.1| - 0.11 12.3 3.2 0.19 11.6 1.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|352681871|ref|YP_004892395.1| - 4.9 6.5 6.7 22 4.4 4.6 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding Prenyltransf PF01255.14 gi|352681872|ref|YP_004892396.1| - 6.9e-70 234.6 0.2 7.8e-70 234.4 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase tRNA_bind PF01588.15 gi|352681873|ref|YP_004892397.1| - 1.5e-25 88.8 0.1 1.8e-25 88.6 0.1 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain PEGA PF08308.6 gi|352681876|ref|YP_004892400.1| - 0.0089 15.7 5.1 1.7 8.5 0.0 4.6 5 0 0 5 5 5 2 PEGA domain HAD_2 PF13419.1 gi|352681877|ref|YP_004892401.1| - 8.9e-18 65.1 0.1 1.1e-17 64.7 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|352681877|ref|YP_004892401.1| - 2.2e-05 24.9 0.1 4.8e-05 23.8 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|352681877|ref|YP_004892401.1| - 7.6e-05 22.3 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like CbiA PF01656.18 gi|352681878|ref|YP_004892402.1| - 7.4e-07 28.7 0.0 1.2e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|352681878|ref|YP_004892402.1| - 8.4e-06 25.7 0.0 1.2e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352681878|ref|YP_004892402.1| - 0.0013 18.4 0.1 0.0037 16.9 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain MipZ PF09140.6 gi|352681878|ref|YP_004892402.1| - 0.0022 17.0 0.0 0.0034 16.5 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|352681878|ref|YP_004892402.1| - 0.017 14.5 0.1 0.043 13.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|352681878|ref|YP_004892402.1| - 0.021 14.1 0.0 0.037 13.3 0.0 1.4 1 0 0 1 1 1 0 YhjQ protein NACHT PF05729.7 gi|352681878|ref|YP_004892402.1| - 0.022 14.4 0.1 0.4 10.3 0.0 2.2 2 0 0 2 2 2 0 NACHT domain ArsA_ATPase PF02374.10 gi|352681878|ref|YP_004892402.1| - 0.15 11.0 1.0 0.38 9.7 0.7 1.6 1 1 0 1 1 1 0 Anion-transporting ATPase DUF1469 PF07332.6 gi|352681879|ref|YP_004892403.1| - 0.034 13.8 0.0 0.039 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|352681879|ref|YP_004892403.1| - 0.048 13.0 0.0 0.054 12.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DDRGK PF09756.4 gi|352681881|ref|YP_004892405.1| - 0.043 13.2 2.0 0.25 10.7 0.1 2.1 2 1 1 3 3 3 0 DDRGK domain PhoU PF01895.14 gi|352681883|ref|YP_004892407.1| - 2.2e-12 47.2 6.8 5.9e-12 45.8 0.3 3.2 3 0 0 3 3 3 1 PhoU domain Antitoxin-MazE PF04014.13 gi|352681883|ref|YP_004892407.1| - 4.3e-07 29.5 0.1 1.8e-06 27.5 0.1 2.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE RNA_pol_L_2 PF13656.1 gi|352681883|ref|YP_004892407.1| - 0.1 12.0 0.1 0.88 9.0 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1614 PF07758.6 gi|352681884|ref|YP_004892408.1| - 1.8e-43 148.3 10.2 1.8e-43 148.3 7.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1614) DMRL_synthase PF00885.14 gi|352681885|ref|YP_004892409.1| - 6.5e-09 35.5 0.0 8.8e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Response_reg PF00072.19 gi|352681885|ref|YP_004892409.1| - 0.1 12.5 0.1 0.4 10.6 0.0 1.9 1 1 1 2 2 2 0 Response regulator receiver domain DUF70 PF01901.11 gi|352681885|ref|YP_004892409.1| - 0.14 11.2 0.0 0.15 11.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF70 RHH_1 PF01402.16 gi|352681886|ref|YP_004892410.1| - 5.5e-08 32.3 0.0 1.2e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.6 gi|352681886|ref|YP_004892410.1| - 1.5e-05 24.7 0.1 3.3e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_3 PF12651.2 gi|352681886|ref|YP_004892410.1| - 0.00014 21.5 0.0 0.00029 20.4 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain CCG PF02754.11 gi|352681887|ref|YP_004892411.1| - 3.2e-11 43.0 0.0 7.3e-07 29.1 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|352681888|ref|YP_004892412.1| - 7e-13 48.3 5.5 9.2e-13 48.0 3.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352681888|ref|YP_004892412.1| - 2.5e-11 43.1 3.7 4.9e-11 42.2 2.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352681888|ref|YP_004892412.1| - 1.3e-10 41.4 5.8 1.9e-10 40.9 4.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352681888|ref|YP_004892412.1| - 1.6e-09 37.9 5.8 2e-09 37.6 4.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681888|ref|YP_004892412.1| - 9.1e-09 34.8 12.1 7.5e-05 22.4 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352681888|ref|YP_004892412.1| - 4.1e-08 32.6 14.2 0.00032 20.4 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|352681888|ref|YP_004892412.1| - 5.9e-08 32.4 11.0 0.0011 19.1 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352681888|ref|YP_004892412.1| - 9.9e-08 31.7 7.6 0.0015 18.3 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352681888|ref|YP_004892412.1| - 1.3e-07 30.8 14.0 0.00079 18.9 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|352681888|ref|YP_004892412.1| - 1.8e-06 28.2 10.3 0.00089 19.6 0.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681888|ref|YP_004892412.1| - 2.5e-05 24.4 11.7 0.00033 20.8 8.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681888|ref|YP_004892412.1| - 7.7e-05 23.3 6.6 0.00021 21.9 4.6 1.7 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|352681888|ref|YP_004892412.1| - 0.00018 21.8 16.7 0.025 15.1 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|352681888|ref|YP_004892412.1| - 0.00058 19.4 5.6 0.0029 17.2 0.2 2.0 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|352681888|ref|YP_004892412.1| - 0.012 16.1 4.3 0.39 11.3 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|352681888|ref|YP_004892412.1| - 0.021 15.1 9.8 0.53 10.7 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-C2H2_4 PF13894.1 gi|352681888|ref|YP_004892412.1| - 0.16 12.3 0.4 0.16 12.3 0.3 2.5 3 1 0 3 3 2 0 C2H2-type zinc finger Prok-JAB PF14464.1 gi|352681889|ref|YP_004892413.1| - 6.3e-14 51.4 0.0 8e-14 51.0 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|352681889|ref|YP_004892413.1| - 0.038 13.7 0.0 0.065 12.9 0.0 1.4 1 0 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Peptidase_M24 PF00557.19 gi|352681890|ref|YP_004892414.1| - 1.2e-58 198.0 0.1 1.7e-58 197.6 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|352681890|ref|YP_004892414.1| - 2.3e-07 31.3 0.0 7e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain ATP-cone PF03477.11 gi|352681890|ref|YP_004892414.1| - 0.18 12.2 1.1 0.64 10.4 0.2 2.2 2 1 0 2 2 2 0 ATP cone domain dUTPase PF00692.14 gi|352681891|ref|YP_004892415.1| - 9.2e-17 60.7 0.0 3.4e-16 58.8 0.0 1.7 1 1 1 2 2 2 1 dUTPase DUF2585 PF10755.4 gi|352681892|ref|YP_004892416.1| - 0.076 12.4 0.9 0.11 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2585) DUF4131 PF13567.1 gi|352681892|ref|YP_004892416.1| - 4.8 6.5 14.5 2.8e+02 0.7 10.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) ThiS PF02597.15 gi|352681893|ref|YP_004892417.1| - 2.4e-07 31.0 0.0 2.7e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|352681893|ref|YP_004892417.1| - 9.3e-06 25.6 0.0 1.1e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) DNA_binding_1 PF01035.15 gi|352681894|ref|YP_004892418.1| - 2.3e-20 72.0 0.0 3.4e-20 71.5 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Fer4_15 PF13459.1 gi|352681895|ref|YP_004892419.1| - 1.2e-07 32.2 0.0 1.5e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|352681895|ref|YP_004892419.1| - 4.7e-06 26.3 0.4 1.9e-05 24.3 0.3 1.8 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|352681895|ref|YP_004892419.1| - 5e-05 23.6 0.0 7.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Flexi_CP PF00286.15 gi|352681895|ref|YP_004892419.1| - 0.087 12.5 0.1 0.1 12.2 0.1 1.3 1 1 0 1 1 1 0 Viral coat protein Fer4_6 PF12837.2 gi|352681895|ref|YP_004892419.1| - 0.14 12.0 0.6 5.9 6.9 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Hydrolase_3 PF08282.7 gi|352681896|ref|YP_004892420.1| - 2.3e-12 47.0 0.0 3.4e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|352681896|ref|YP_004892420.1| - 4e-07 30.3 0.1 7.4e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|352681896|ref|YP_004892420.1| - 1.3e-05 25.5 0.1 3.7e-05 24.0 0.1 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|352681896|ref|YP_004892420.1| - 3.1e-05 24.4 0.1 0.11 12.8 0.0 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|352681896|ref|YP_004892420.1| - 0.0019 17.5 0.0 0.0034 16.7 0.0 1.4 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_like PF13242.1 gi|352681896|ref|YP_004892420.1| - 0.0095 15.6 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like PEP-utilizers_C PF02896.13 gi|352681897|ref|YP_004892421.1| - 9.1e-86 287.3 0.1 1.5e-85 286.6 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|352681897|ref|YP_004892421.1| - 2e-54 184.8 0.0 3.4e-53 180.8 0.0 2.6 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|352681897|ref|YP_004892421.1| - 3.5e-21 74.5 1.1 7e-21 73.5 0.7 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain ORF6C PF10552.4 gi|352681897|ref|YP_004892421.1| - 0.075 12.7 0.3 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 ORF6C domain Metallophos PF00149.23 gi|352681898|ref|YP_004892422.1| - 1.5e-23 83.2 0.0 2e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|352681898|ref|YP_004892422.1| - 0.00015 21.6 0.0 0.00022 21.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TatD_DNase PF01026.16 gi|352681899|ref|YP_004892423.1| - 1.8e-50 171.5 0.0 2e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|352681899|ref|YP_004892423.1| - 0.0067 16.0 2.3 0.015 14.8 1.6 1.8 1 1 0 1 1 1 1 Amidohydrolase tRNA_edit PF04073.10 gi|352681900|ref|YP_004892424.1| - 7.2e-27 93.6 0.2 8.5e-27 93.4 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Peptidase_S51 PF03575.12 gi|352681900|ref|YP_004892424.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 CBS PF00571.23 gi|352681901|ref|YP_004892425.1| - 9.3e-16 57.3 0.3 1.2e-06 28.2 0.0 2.2 2 0 0 2 2 2 2 CBS domain Fucose_iso_C PF02952.12 gi|352681902|ref|YP_004892426.1| - 3.4e-07 29.8 0.0 6.1e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain UbiD PF01977.11 gi|352681903|ref|YP_004892427.1| - 1.5e-138 461.7 0.0 1.7e-138 461.4 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiA PF01040.13 gi|352681904|ref|YP_004892428.1| - 1.6e-25 89.7 25.3 2e-25 89.4 17.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family CobD_Cbib PF03186.8 gi|352681905|ref|YP_004892429.1| - 2.7e-53 180.9 2.1 3.2e-53 180.7 1.5 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Gaa1 PF04114.9 gi|352681906|ref|YP_004892430.1| - 0.11 11.1 0.0 0.12 11.0 0.0 1.0 1 0 0 1 1 1 0 Gaa1-like, GPI transamidase component Radical_SAM PF04055.16 gi|352681907|ref|YP_004892431.1| - 5.6e-18 65.6 0.0 2.6e-17 63.4 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily PLDc_2 PF13091.1 gi|352681909|ref|YP_004892433.1| - 2.4e-24 85.4 0.0 9.1e-17 60.9 0.1 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|352681909|ref|YP_004892433.1| - 0.00029 20.5 3.2 0.023 14.4 0.1 2.4 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|352681909|ref|YP_004892433.1| - 0.0012 17.9 0.0 0.0021 17.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF2324 PF10086.4 gi|352681909|ref|YP_004892433.1| - 0.11 11.7 2.4 2.4 7.3 0.8 2.2 2 0 0 2 2 2 0 Putative membrane peptidase family (DUF2324) Glycos_transf_2 PF00535.21 gi|352681910|ref|YP_004892434.1| - 1.7e-29 102.6 0.0 2.3e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|352681910|ref|YP_004892434.1| - 5.5e-21 74.6 7.7 1.9e-20 72.9 5.6 1.7 1 1 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|352681910|ref|YP_004892434.1| - 4.9e-13 49.3 0.2 1e-12 48.3 0.2 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|352681910|ref|YP_004892434.1| - 0.036 13.1 0.0 0.049 12.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF4133 PF13571.1 gi|352681910|ref|YP_004892434.1| - 0.04 14.1 0.2 0.086 13.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) Glyco_tranf_2_4 PF13704.1 gi|352681910|ref|YP_004892434.1| - 0.077 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF4235 PF14019.1 gi|352681910|ref|YP_004892434.1| - 0.24 11.2 0.0 0.24 11.2 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4235) KaiC PF06745.8 gi|352681911|ref|YP_004892435.1| - 2.4e-26 92.2 0.0 6.1e-16 58.2 0.0 3.2 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|352681911|ref|YP_004892435.1| - 7.6e-18 64.6 0.0 1.6e-10 40.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|352681911|ref|YP_004892435.1| - 6.3e-12 45.7 0.0 7e-05 22.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|352681911|ref|YP_004892435.1| - 1.7e-09 37.2 0.3 0.00026 20.6 0.0 3.4 3 0 0 3 3 3 2 Part of AAA domain IstB_IS21 PF01695.12 gi|352681911|ref|YP_004892435.1| - 2.3e-09 36.9 0.1 0.00093 18.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|352681911|ref|YP_004892435.1| - 8.2e-09 35.7 0.1 0.0082 16.1 0.0 3.3 2 2 1 4 4 3 2 AAA ATPase domain AAA_18 PF13238.1 gi|352681911|ref|YP_004892435.1| - 1.3e-08 35.1 0.0 0.0002 21.6 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|352681911|ref|YP_004892435.1| - 2.2e-07 30.6 0.1 0.013 15.2 0.0 3.0 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|352681911|ref|YP_004892435.1| - 3.4e-07 30.5 0.0 0.037 14.2 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|352681911|ref|YP_004892435.1| - 8.1e-07 28.8 0.1 0.045 13.4 0.0 3.0 2 2 0 2 2 2 2 NACHT domain AAA_17 PF13207.1 gi|352681911|ref|YP_004892435.1| - 1.1e-06 29.5 0.4 0.028 15.2 0.0 2.6 2 2 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|352681911|ref|YP_004892435.1| - 3.1e-06 27.0 0.0 0.0034 17.1 0.0 2.4 2 0 0 2 2 2 2 Archaeal ATPase GvpD PF07088.6 gi|352681911|ref|YP_004892435.1| - 3.3e-06 25.7 0.1 0.012 13.9 0.0 2.9 3 0 0 3 3 3 2 GvpD gas vesicle protein AAA_14 PF13173.1 gi|352681911|ref|YP_004892435.1| - 5.4e-06 26.3 0.0 0.13 12.1 0.0 3.0 2 1 1 3 3 3 2 AAA domain MobB PF03205.9 gi|352681911|ref|YP_004892435.1| - 6.1e-06 25.9 0.0 0.039 13.6 0.0 2.7 3 0 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.11 gi|352681911|ref|YP_004892435.1| - 6.3e-06 25.5 0.1 0.066 12.4 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein AAA_28 PF13521.1 gi|352681911|ref|YP_004892435.1| - 1.2e-05 25.3 0.0 0.038 13.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|352681911|ref|YP_004892435.1| - 3.1e-05 23.5 0.0 0.11 11.9 0.0 2.4 3 0 0 3 3 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|352681911|ref|YP_004892435.1| - 3.2e-05 23.6 2.7 0.12 11.9 0.1 2.6 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|352681911|ref|YP_004892435.1| - 3.5e-05 23.9 0.0 0.26 11.4 0.0 2.4 2 0 0 2 2 2 2 RNA helicase SRP54 PF00448.17 gi|352681911|ref|YP_004892435.1| - 6.9e-05 22.3 0.0 0.43 9.9 0.0 2.9 3 0 0 3 3 3 2 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|352681911|ref|YP_004892435.1| - 0.0001 21.8 0.1 0.004 16.6 0.0 2.7 2 2 0 2 2 2 1 AAA-like domain AAA_30 PF13604.1 gi|352681911|ref|YP_004892435.1| - 0.00017 21.2 0.2 0.21 11.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|352681911|ref|YP_004892435.1| - 0.00024 20.2 0.1 0.66 8.9 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|352681911|ref|YP_004892435.1| - 0.00032 20.4 0.4 1.8 8.2 0.0 3.4 3 1 0 3 3 2 1 NTPase DUF2075 PF09848.4 gi|352681911|ref|YP_004892435.1| - 0.00082 18.4 0.0 0.079 11.9 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|352681911|ref|YP_004892435.1| - 0.00086 18.9 0.0 0.35 10.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|352681911|ref|YP_004892435.1| - 0.0012 18.7 0.0 0.088 12.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|352681911|ref|YP_004892435.1| - 0.0016 17.3 0.0 1.1 8.0 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain ABC_tran PF00005.22 gi|352681911|ref|YP_004892435.1| - 0.0038 17.5 0.0 0.75 10.0 0.0 2.8 3 0 0 3 3 3 1 ABC transporter DUF258 PF03193.11 gi|352681911|ref|YP_004892435.1| - 0.0049 16.0 0.0 1.8 7.7 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|352681911|ref|YP_004892435.1| - 0.0049 17.2 2.3 0.53 10.5 0.2 2.3 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|352681911|ref|YP_004892435.1| - 0.0052 16.2 0.0 0.74 9.2 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) cobW PF02492.14 gi|352681911|ref|YP_004892435.1| - 0.0058 16.1 0.1 1 8.7 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|352681911|ref|YP_004892435.1| - 0.009 15.1 0.2 5.8 6.0 0.0 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI CbiA PF01656.18 gi|352681911|ref|YP_004892435.1| - 0.0097 15.3 0.2 4 6.8 0.0 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain RecA PF00154.16 gi|352681911|ref|YP_004892435.1| - 0.01 14.9 0.0 1.4 7.8 0.0 2.3 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_13 PF13166.1 gi|352681911|ref|YP_004892435.1| - 0.01 14.3 0.0 2.2 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|352681911|ref|YP_004892435.1| - 0.017 14.6 0.0 2.8 7.3 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain TIP49 PF06068.8 gi|352681911|ref|YP_004892435.1| - 0.017 13.8 0.0 2.2 6.8 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus IPT PF01745.11 gi|352681911|ref|YP_004892435.1| - 0.019 14.1 0.4 0.68 9.0 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase AAA_29 PF13555.1 gi|352681911|ref|YP_004892435.1| - 0.025 14.0 1.8 3.2 7.3 0.1 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain Miro PF08477.8 gi|352681911|ref|YP_004892435.1| - 0.038 14.4 0.0 0.82 10.1 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein AAA_31 PF13614.1 gi|352681911|ref|YP_004892435.1| - 0.04 13.8 0.0 3.4 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|352681911|ref|YP_004892435.1| - 0.073 12.5 0.0 13 5.2 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP_bind_1 PF03029.12 gi|352681911|ref|YP_004892435.1| - 0.075 12.5 0.0 11 5.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|352681911|ref|YP_004892435.1| - 0.09 11.8 0.1 1.2 8.2 0.0 2.3 2 1 0 2 2 2 0 Zeta toxin ResIII PF04851.10 gi|352681911|ref|YP_004892435.1| - 0.13 12.1 0.3 18 5.0 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Ras PF00071.17 gi|352681911|ref|YP_004892435.1| - 0.13 11.6 0.0 2.3 7.5 0.0 2.2 2 0 0 2 2 2 0 Ras family Parvo_NS1 PF01057.12 gi|352681911|ref|YP_004892435.1| - 0.17 10.7 0.0 1.6 7.5 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 Slx4 PF09494.5 gi|352681912|ref|YP_004892436.1| - 0.14 11.9 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 Slx4 endonuclease TYW3 PF02676.9 gi|352681913|ref|YP_004892437.1| - 4.9e-36 123.7 0.0 6.3e-36 123.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 Nif11 PF07862.6 gi|352681913|ref|YP_004892437.1| - 0.072 13.0 0.3 20 5.2 0.0 3.3 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function Amidase_2 PF01510.20 gi|352681913|ref|YP_004892437.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.3 1 1 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase Ubie_methyltran PF01209.13 gi|352681914|ref|YP_004892438.1| - 2e-18 66.3 0.0 2.7e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|352681914|ref|YP_004892438.1| - 3.9e-16 59.3 0.0 6.2e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352681914|ref|YP_004892438.1| - 1.2e-09 38.4 0.0 3.6e-09 36.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352681914|ref|YP_004892438.1| - 2.2e-09 37.8 0.0 3.8e-09 37.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352681914|ref|YP_004892438.1| - 5.9e-09 36.2 0.0 1e-08 35.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352681914|ref|YP_004892438.1| - 7.4e-09 35.3 0.0 1.2e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352681914|ref|YP_004892438.1| - 2.1e-08 34.0 0.0 3.2e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|352681914|ref|YP_004892438.1| - 7.2e-06 25.5 0.0 1.1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|352681914|ref|YP_004892438.1| - 0.0024 16.6 0.1 0.0034 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_26 PF13659.1 gi|352681914|ref|YP_004892438.1| - 0.0026 17.7 0.1 0.0042 17.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|352681914|ref|YP_004892438.1| - 0.014 14.4 0.0 0.02 13.9 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|352681914|ref|YP_004892438.1| - 0.024 13.6 0.0 0.035 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|352681914|ref|YP_004892438.1| - 0.039 13.3 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|352681914|ref|YP_004892438.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352681915|ref|YP_004892439.1| - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352681915|ref|YP_004892439.1| - 0.049 14.1 0.0 0.11 13.0 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PGM_PMM_I PF02878.11 gi|352681915|ref|YP_004892439.1| - 0.15 11.5 0.0 0.34 10.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Desulfoferrod_N PF06397.7 gi|352681916|ref|YP_004892440.1| - 0.018 14.4 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Asparaginase PF00710.15 gi|352681916|ref|YP_004892440.1| - 0.041 12.7 0.0 2 7.1 0.0 2.0 2 0 0 2 2 2 0 Asparaginase zf-DNL PF05180.7 gi|352681916|ref|YP_004892440.1| - 0.049 13.3 0.1 0.078 12.7 0.1 1.4 1 0 0 1 1 1 0 DNL zinc finger Reeler PF02014.11 gi|352681916|ref|YP_004892440.1| - 0.088 13.0 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Reeler domain Zn-ribbon_8 PF09723.5 gi|352681916|ref|YP_004892440.1| - 0.19 11.6 1.4 3.7 7.5 0.1 2.5 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|352681916|ref|YP_004892440.1| - 0.94 9.2 4.2 5.6 6.7 2.9 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|352681916|ref|YP_004892440.1| - 1.5 8.5 5.8 0.21 11.3 0.9 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TcdA_TcdB PF12919.2 gi|352681917|ref|YP_004892441.1| - 0.052 12.0 0.4 0.064 11.7 0.3 1.0 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain CCDC-167 PF15188.1 gi|352681917|ref|YP_004892441.1| - 0.12 12.3 0.3 0.2 11.6 0.2 1.4 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 UPF0126 PF03458.8 gi|352681919|ref|YP_004892443.1| - 3.8e-46 154.5 16.9 2.4e-25 87.9 4.6 2.3 2 0 0 2 2 2 2 UPF0126 domain 2_5_RNA_ligase2 PF13563.1 gi|352681921|ref|YP_004892445.1| - 3.8e-10 39.6 0.3 4.2e-09 36.3 0.2 1.9 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|352681921|ref|YP_004892445.1| - 1.6e-06 27.9 1.3 0.0014 18.5 0.0 2.4 2 1 0 2 2 2 2 LigT like Phosphoesterase ABC_tran PF00005.22 gi|352681922|ref|YP_004892446.1| - 1.2e-41 142.2 0.0 2.1e-20 73.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|352681922|ref|YP_004892446.1| - 1.2e-15 58.3 2.6 8.3e-06 25.9 1.0 4.2 2 2 1 3 3 3 3 AAA domain RLI PF04068.10 gi|352681922|ref|YP_004892446.1| - 8.7e-13 47.6 4.4 1.9e-12 46.5 3.1 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|352681922|ref|YP_004892446.1| - 2.7e-11 43.1 2.4 0.00044 19.5 0.2 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|352681922|ref|YP_004892446.1| - 1.2e-08 35.7 0.9 0.0011 19.8 0.0 3.1 2 1 0 2 2 2 2 AAA domain Fer4_6 PF12837.2 gi|352681922|ref|YP_004892446.1| - 4.9e-08 32.4 12.5 2e-05 24.2 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|352681922|ref|YP_004892446.1| - 2.7e-07 29.8 2.8 2.7e-07 29.8 2.0 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain AAA PF00004.24 gi|352681922|ref|YP_004892446.1| - 8.6e-07 29.2 0.1 0.015 15.4 0.0 3.3 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|352681922|ref|YP_004892446.1| - 2.6e-06 27.1 0.8 0.0026 17.4 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|352681922|ref|YP_004892446.1| - 2.1e-05 24.0 0.2 0.031 13.6 0.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|352681922|ref|YP_004892446.1| - 9.8e-05 22.5 0.5 0.032 14.3 0.0 3.0 2 2 0 2 2 2 1 AAA domain Fer4_7 PF12838.2 gi|352681922|ref|YP_004892446.1| - 0.0001 22.6 19.3 0.0018 18.6 1.6 2.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681922|ref|YP_004892446.1| - 0.00016 21.4 7.7 0.00027 20.7 5.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Miro PF08477.8 gi|352681922|ref|YP_004892446.1| - 0.00023 21.6 0.2 0.057 13.9 0.0 2.9 3 1 0 3 3 2 1 Miro-like protein AAA_14 PF13173.1 gi|352681922|ref|YP_004892446.1| - 0.0003 20.6 0.1 0.15 11.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|352681922|ref|YP_004892446.1| - 0.00042 20.6 0.3 0.57 10.5 0.2 2.8 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|352681922|ref|YP_004892446.1| - 0.00052 19.8 0.9 1.4 8.8 0.1 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|352681922|ref|YP_004892446.1| - 0.00057 19.7 0.7 0.066 13.0 0.0 3.3 4 1 0 4 4 2 1 AAA domain ArgK PF03308.11 gi|352681922|ref|YP_004892446.1| - 0.00068 18.4 1.2 0.0028 16.4 0.1 2.1 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|352681922|ref|YP_004892446.1| - 0.0007 19.6 0.2 0.007 16.3 0.0 2.4 2 2 0 2 2 2 1 AAA ATPase domain Fer4_2 PF12797.2 gi|352681922|ref|YP_004892446.1| - 0.00088 19.0 12.6 0.0014 18.4 1.7 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_23 PF13476.1 gi|352681922|ref|YP_004892446.1| - 0.0013 19.1 0.3 0.99 9.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|352681922|ref|YP_004892446.1| - 0.0021 17.9 0.0 0.11 12.4 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF258 PF03193.11 gi|352681922|ref|YP_004892446.1| - 0.0023 17.1 0.3 0.1 11.7 0.1 2.7 3 0 0 3 3 2 1 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|352681922|ref|YP_004892446.1| - 0.0029 17.3 1.3 0.074 12.7 0.1 3.0 2 1 0 2 2 2 1 NTPase UPF0079 PF02367.12 gi|352681922|ref|YP_004892446.1| - 0.004 16.7 0.6 0.42 10.2 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Fer4_10 PF13237.1 gi|352681922|ref|YP_004892446.1| - 0.006 16.3 2.2 0.006 16.3 1.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_29 PF13555.1 gi|352681922|ref|YP_004892446.1| - 0.0076 15.7 0.1 0.92 9.0 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain RecA PF00154.16 gi|352681922|ref|YP_004892446.1| - 0.0077 15.3 0.1 0.22 10.5 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein NACHT PF05729.7 gi|352681922|ref|YP_004892446.1| - 0.0078 15.8 0.2 0.041 13.5 0.0 2.1 2 0 0 2 2 2 1 NACHT domain RuvB_N PF05496.7 gi|352681922|ref|YP_004892446.1| - 0.0082 15.2 0.3 1 8.3 0.0 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Fer4_11 PF13247.1 gi|352681922|ref|YP_004892446.1| - 0.0087 15.9 3.2 0.016 15.0 2.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681922|ref|YP_004892446.1| - 0.011 16.4 0.2 0.011 16.4 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|352681922|ref|YP_004892446.1| - 0.011 15.9 2.3 0.011 15.9 1.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Arch_ATPase PF01637.13 gi|352681922|ref|YP_004892446.1| - 0.018 14.7 0.1 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase AAA_15 PF13175.1 gi|352681922|ref|YP_004892446.1| - 0.021 13.8 0.0 6.6 5.6 0.0 3.4 4 0 0 4 4 4 0 AAA ATPase domain RNA_helicase PF00910.17 gi|352681922|ref|YP_004892446.1| - 0.023 14.8 0.0 1.6 8.9 0.0 2.6 2 0 0 2 2 2 0 RNA helicase Fer4_3 PF12798.2 gi|352681922|ref|YP_004892446.1| - 0.038 14.5 4.8 0.038 14.5 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ATP-synt_ab PF00006.20 gi|352681922|ref|YP_004892446.1| - 0.044 13.2 0.1 5.3 6.4 0.0 2.7 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain Fer4_18 PF13746.1 gi|352681922|ref|YP_004892446.1| - 0.07 13.5 0.6 0.07 13.5 0.4 2.7 3 0 0 3 3 1 0 4Fe-4S dicluster domain SRP54 PF00448.17 gi|352681922|ref|YP_004892446.1| - 0.071 12.5 0.0 0.6 9.5 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain T2SE PF00437.15 gi|352681922|ref|YP_004892446.1| - 0.089 11.6 0.1 0.28 10.0 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Fer4_8 PF13183.1 gi|352681922|ref|YP_004892446.1| - 0.11 12.5 5.4 0.11 12.5 0.9 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain NB-ARC PF00931.17 gi|352681922|ref|YP_004892446.1| - 0.15 10.9 3.1 5.6 5.7 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain ATP_bind_1 PF03029.12 gi|352681922|ref|YP_004892446.1| - 0.17 11.4 0.0 0.72 9.3 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Fer4_4 PF12800.2 gi|352681922|ref|YP_004892446.1| - 0.29 11.5 12.6 0.15 12.4 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|352681922|ref|YP_004892446.1| - 0.83 10.2 10.5 0.46 11.0 2.1 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain AAA_24 PF13479.1 gi|352681922|ref|YP_004892446.1| - 1.9 8.0 3.3 3.5 7.1 0.0 2.6 3 0 0 3 3 2 0 AAA domain Fer4_17 PF13534.1 gi|352681922|ref|YP_004892446.1| - 2.5 8.5 9.3 46 4.4 6.5 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain RNA_POL_M_15KD PF02150.11 gi|352681923|ref|YP_004892447.1| - 8.7e-05 22.1 0.0 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.1 gi|352681923|ref|YP_004892447.1| - 0.00011 21.2 0.2 0.00011 21.2 0.2 1.7 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|352681923|ref|YP_004892447.1| - 0.00012 21.4 0.1 0.00051 19.4 0.1 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain FYDLN_acid PF09538.5 gi|352681923|ref|YP_004892447.1| - 0.0017 18.9 1.0 0.0018 18.8 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) DZR PF12773.2 gi|352681923|ref|YP_004892447.1| - 0.0026 17.5 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF2387 PF09526.5 gi|352681923|ref|YP_004892447.1| - 0.0055 16.5 0.5 0.0078 16.1 0.3 1.4 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|352681923|ref|YP_004892447.1| - 0.037 13.2 0.7 0.42 9.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2072 PF09845.4 gi|352681923|ref|YP_004892447.1| - 0.038 13.9 0.7 0.043 13.7 0.5 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|352681923|ref|YP_004892447.1| - 0.041 13.3 2.2 0.1 12.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|352681923|ref|YP_004892447.1| - 0.053 13.5 1.4 1.4 9.0 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RE_HpaII PF09561.5 gi|352681923|ref|YP_004892447.1| - 0.1 11.7 0.2 0.11 11.6 0.2 1.0 1 0 0 1 1 1 0 HpaII restriction endonuclease PhnA_Zn_Ribbon PF08274.7 gi|352681923|ref|YP_004892447.1| - 0.11 12.3 0.1 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Auto_anti-p27 PF06677.7 gi|352681923|ref|YP_004892447.1| - 0.24 11.2 2.3 1 9.1 1.8 1.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SHOCT PF09851.4 gi|352681923|ref|YP_004892447.1| - 0.61 9.6 7.5 1 8.9 2.8 2.2 2 0 0 2 2 2 0 Short C-terminal domain TPX2 PF06886.6 gi|352681923|ref|YP_004892447.1| - 5.7 7.0 7.7 8.2 6.5 5.4 1.4 1 0 0 1 1 1 0 Targeting protein for Xklp2 (TPX2) TPP_enzyme_C PF02775.16 gi|352681924|ref|YP_004892448.1| - 3.4e-20 72.1 0.1 1.5e-19 70.1 0.0 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|352681924|ref|YP_004892448.1| - 1.5e-12 47.5 0.1 2.7e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|352681924|ref|YP_004892448.1| - 2.1e-11 42.9 11.1 2.9e-08 32.9 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|352681924|ref|YP_004892448.1| - 8.3e-08 31.8 4.0 0.0017 17.8 0.2 2.9 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_6 PF12837.2 gi|352681924|ref|YP_004892448.1| - 2.5e-07 30.2 18.1 7e-07 28.8 1.4 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352681924|ref|YP_004892448.1| - 2e-06 27.3 11.4 0.00023 20.8 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|352681924|ref|YP_004892448.1| - 1.5e-05 25.2 22.5 0.00077 19.8 8.0 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681924|ref|YP_004892448.1| - 8.9e-05 22.2 8.4 0.00018 21.2 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|352681924|ref|YP_004892448.1| - 0.00019 21.2 5.2 0.00035 20.4 3.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352681924|ref|YP_004892448.1| - 0.00067 19.4 23.9 0.0011 18.7 2.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352681924|ref|YP_004892448.1| - 0.0018 18.7 8.9 0.079 13.5 0.8 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|352681924|ref|YP_004892448.1| - 0.0019 18.4 5.4 0.0085 16.4 0.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352681924|ref|YP_004892448.1| - 0.0034 18.0 6.8 0.0045 17.7 0.7 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|352681924|ref|YP_004892448.1| - 0.0095 16.1 3.4 0.0095 16.1 2.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain E1_dh PF00676.15 gi|352681924|ref|YP_004892448.1| - 0.015 13.9 0.0 0.026 13.2 0.0 1.3 1 0 0 1 1 1 0 Dehydrogenase E1 component Transketolase_C PF02780.15 gi|352681924|ref|YP_004892448.1| - 0.055 13.4 0.1 0.19 11.6 0.0 2.0 1 0 0 1 1 1 0 Transketolase, C-terminal domain DXP_synthase_N PF13292.1 gi|352681924|ref|YP_004892448.1| - 0.15 10.9 0.1 0.45 9.4 0.0 1.8 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_8 PF13183.1 gi|352681924|ref|YP_004892448.1| - 0.28 11.2 11.3 0.93 9.5 7.9 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|352681924|ref|YP_004892448.1| - 0.68 10.3 9.0 2.8 8.4 0.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|352681924|ref|YP_004892448.1| - 1 9.8 12.7 0.4 11.1 2.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|352681925|ref|YP_004892449.1| - 1e-31 110.1 0.3 1.3e-31 109.8 0.2 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase RIO1 PF01163.17 gi|352681926|ref|YP_004892450.1| - 6e-52 175.7 0.0 8.3e-52 175.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|352681926|ref|YP_004892450.1| - 2.4e-05 23.6 0.0 3.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|352681926|ref|YP_004892450.1| - 0.0021 17.8 0.2 0.044 13.5 0.1 2.4 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|352681926|ref|YP_004892450.1| - 0.05 12.6 0.0 0.24 10.4 0.0 2.0 2 1 1 3 3 3 0 Lipopolysaccharide kinase (Kdo/WaaP) family KH_1 PF00013.24 gi|352681927|ref|YP_004892451.1| - 3.5e-06 26.5 0.6 1.6e-05 24.4 0.1 2.2 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|352681927|ref|YP_004892451.1| - 0.028 14.0 0.1 0.25 11.0 0.0 2.3 2 0 0 2 2 2 0 KH domain Cytochrom_B559a PF00284.15 gi|352681927|ref|YP_004892451.1| - 0.11 11.9 0.1 0.34 10.4 0.0 1.8 2 0 0 2 2 2 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit Ribosomal_S3Ae PF01015.13 gi|352681928|ref|YP_004892452.1| - 2.5e-62 209.6 0.2 3e-62 209.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Gtr1_RagA PF04670.7 gi|352681928|ref|YP_004892452.1| - 0.011 14.9 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region NapD PF03927.8 gi|352681929|ref|YP_004892453.1| - 0.02 14.7 0.2 0.041 13.7 0.1 1.6 1 1 1 2 2 2 0 NapD protein Pcc1 PF09341.5 gi|352681929|ref|YP_004892453.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S13_N PF08069.7 gi|352681931|ref|YP_004892455.1| - 2.1e-25 88.3 0.0 4.9e-25 87.1 0.0 1.7 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|352681931|ref|YP_004892455.1| - 8.7e-21 73.4 0.5 1.3e-20 72.9 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 CMAS PF02353.15 gi|352681932|ref|YP_004892456.1| - 2.3e-07 30.1 0.0 2.9e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|352681932|ref|YP_004892456.1| - 3.5e-06 26.4 0.0 4e-05 23.0 0.0 2.2 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_18 PF12847.2 gi|352681932|ref|YP_004892456.1| - 2.9e-05 24.5 0.0 5.2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352681932|ref|YP_004892456.1| - 5.6e-05 22.7 0.0 6.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF2172 PF09940.4 gi|352681932|ref|YP_004892456.1| - 0.00038 18.9 0.0 0.00051 18.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2172) Methyltransf_26 PF13659.1 gi|352681932|ref|YP_004892456.1| - 0.00045 20.2 0.0 0.00066 19.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TrmB PF01978.14 gi|352681932|ref|YP_004892456.1| - 0.00053 19.6 0.1 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|352681932|ref|YP_004892456.1| - 0.0011 18.4 0.1 0.0034 16.8 0.0 1.8 2 0 0 2 2 1 1 TFIIE alpha subunit Methyltransf_4 PF02390.12 gi|352681932|ref|YP_004892456.1| - 0.0015 17.6 0.0 0.0023 16.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase HTH_24 PF13412.1 gi|352681932|ref|YP_004892456.1| - 0.0015 17.8 0.1 0.0044 16.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Methyltransf_25 PF13649.1 gi|352681932|ref|YP_004892456.1| - 0.0033 17.7 0.0 0.0051 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|352681932|ref|YP_004892456.1| - 0.0049 16.4 0.0 0.0072 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MarR_2 PF12802.2 gi|352681932|ref|YP_004892456.1| - 0.0051 16.4 0.0 0.014 15.0 0.0 1.7 2 0 0 2 2 1 1 MarR family Rrf2 PF02082.15 gi|352681932|ref|YP_004892456.1| - 0.0076 16.3 0.1 0.025 14.7 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator MetW PF07021.7 gi|352681932|ref|YP_004892456.1| - 0.0089 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW HTH_27 PF13463.1 gi|352681932|ref|YP_004892456.1| - 0.017 15.4 0.0 0.072 13.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.17 gi|352681932|ref|YP_004892456.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|352681932|ref|YP_004892456.1| - 0.039 13.6 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r3 PF04539.11 gi|352681932|ref|YP_004892456.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_Crp_2 PF13545.1 gi|352681932|ref|YP_004892456.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SgrR_N PF12793.2 gi|352681932|ref|YP_004892456.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DUF4423 PF14394.1 gi|352681932|ref|YP_004892456.1| - 0.093 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RPA_C PF08784.6 gi|352681932|ref|YP_004892456.1| - 0.11 12.9 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HrcA_DNA-bdg PF03444.10 gi|352681932|ref|YP_004892456.1| - 0.19 11.1 0.9 0.39 10.1 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DS PF01916.12 gi|352681933|ref|YP_004892457.1| - 7.9e-66 222.1 0.0 8.8e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glycos_transf_4 PF00953.16 gi|352681934|ref|YP_004892458.1| - 5e-26 91.4 11.7 5e-26 91.4 8.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 4 Erythrovirus_X PF06795.6 gi|352681934|ref|YP_004892458.1| - 0.023 14.7 0.2 0.057 13.4 0.1 1.7 1 0 0 1 1 1 0 Erythrovirus X protein DUF1980 PF09323.5 gi|352681935|ref|YP_004892459.1| - 0.18 11.4 1.2 0.18 11.5 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) DUF485 PF04341.7 gi|352681935|ref|YP_004892459.1| - 3.5 7.3 7.1 4.2 7.1 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF485 Ras PF00071.17 gi|352681936|ref|YP_004892460.1| - 1.2e-07 31.2 0.1 9.4e-07 28.3 0.1 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.16 gi|352681936|ref|YP_004892460.1| - 8.3e-06 25.1 0.0 9.5e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|352681936|ref|YP_004892460.1| - 2e-05 25.0 0.0 5.3e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|352681936|ref|YP_004892460.1| - 0.00016 21.2 0.0 0.00044 19.7 0.0 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|352681936|ref|YP_004892460.1| - 0.00065 19.6 0.0 0.00082 19.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|352681936|ref|YP_004892460.1| - 0.00065 18.9 0.0 0.0021 17.3 0.0 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.5 gi|352681936|ref|YP_004892460.1| - 0.02 14.1 0.0 0.026 13.7 0.0 1.1 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Viral_helicase1 PF01443.13 gi|352681936|ref|YP_004892460.1| - 0.16 11.4 0.0 0.21 11.0 0.0 1.1 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Hydrolase_3 PF08282.7 gi|352681938|ref|YP_004892462.1| - 2.9e-28 99.1 0.0 2.3e-14 53.5 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|352681938|ref|YP_004892462.1| - 1.5e-09 38.2 1.0 2.2e-06 28.0 0.0 3.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|352681938|ref|YP_004892462.1| - 5.7e-09 35.6 0.0 1e-08 34.8 0.0 1.3 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|352681938|ref|YP_004892462.1| - 9.6e-06 26.1 0.3 0.0029 18.0 0.2 3.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|352681938|ref|YP_004892462.1| - 0.014 15.3 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF1344 PF07076.6 gi|352681938|ref|YP_004892462.1| - 0.095 12.2 0.1 0.32 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) ETF PF01012.16 gi|352681939|ref|YP_004892463.1| - 1.3e-44 151.7 0.3 5.7e-44 149.7 0.0 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|352681939|ref|YP_004892463.1| - 3.1e-36 122.8 0.6 5.7e-36 122.0 0.4 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.17 gi|352681939|ref|YP_004892463.1| - 0.36 10.5 2.7 1.7 8.4 0.5 2.7 2 2 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ETF PF01012.16 gi|352681940|ref|YP_004892464.1| - 1.7e-31 109.1 0.0 2.2e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Gly_kinase PF02595.10 gi|352681940|ref|YP_004892464.1| - 0.079 11.6 0.0 0.096 11.3 0.0 1.1 1 0 0 1 1 1 0 Glycerate kinase family Usp PF00582.21 gi|352681940|ref|YP_004892464.1| - 0.13 12.4 0.1 0.54 10.4 0.0 2.0 2 0 0 2 2 2 0 Universal stress protein family Fer4_2 PF12797.2 gi|352681941|ref|YP_004892465.1| - 7.2e-08 31.9 12.7 0.0001 22.0 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|352681941|ref|YP_004892465.1| - 2.4e-07 30.5 9.1 3.2e-07 30.1 6.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352681941|ref|YP_004892465.1| - 1.9e-06 27.5 25.8 0.00044 19.9 11.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352681941|ref|YP_004892465.1| - 5.9e-05 22.5 2.8 5.9e-05 22.5 1.9 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|352681941|ref|YP_004892465.1| - 9.4e-05 22.7 25.6 0.0023 18.2 1.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352681941|ref|YP_004892465.1| - 0.0016 18.6 16.6 0.03 14.5 2.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352681941|ref|YP_004892465.1| - 0.0019 17.9 2.2 0.0019 17.9 1.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352681941|ref|YP_004892465.1| - 0.0061 16.5 3.2 0.0061 16.5 2.2 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352681941|ref|YP_004892465.1| - 0.0062 16.7 3.4 0.0062 16.7 2.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|352681941|ref|YP_004892465.1| - 0.067 13.7 4.5 0.067 13.7 3.1 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|352681941|ref|YP_004892465.1| - 0.069 13.5 4.5 0.069 13.5 3.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352681941|ref|YP_004892465.1| - 0.095 12.5 15.2 0.17 11.7 10.5 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain QueC PF06508.8 gi|352681941|ref|YP_004892465.1| - 1.1 8.5 4.6 1.3 8.3 3.2 1.0 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Fer4_16 PF13484.1 gi|352681941|ref|YP_004892465.1| - 1.5 9.6 16.5 0.46 11.2 1.5 2.5 1 1 3 4 4 4 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|352681941|ref|YP_004892465.1| - 2.3 8.6 18.0 0.23 11.9 2.3 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|352681941|ref|YP_004892465.1| - 6.8 6.3 15.0 0.8 9.3 3.9 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.19 gi|352681942|ref|YP_004892466.1| - 6.2e-14 51.6 4.8 7.4e-08 31.6 0.6 2.5 1 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|352681942|ref|YP_004892466.1| - 2e-13 49.9 0.8 8.3e-10 38.1 0.1 2.2 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.14 gi|352681942|ref|YP_004892466.1| - 1.1e-09 37.8 0.4 2.4e-06 26.8 0.2 2.7 2 1 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|352681942|ref|YP_004892466.1| - 4.2e-09 36.3 0.1 1.2e-08 34.8 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|352681942|ref|YP_004892466.1| - 9.4e-09 34.6 0.3 4e-08 32.5 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|352681942|ref|YP_004892466.1| - 1.9e-08 34.6 0.0 3.5e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|352681942|ref|YP_004892466.1| - 5.5e-08 32.9 0.1 9e-08 32.2 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|352681942|ref|YP_004892466.1| - 8.8e-08 31.6 0.2 1.7e-07 30.6 0.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|352681942|ref|YP_004892466.1| - 1.4e-07 30.3 0.8 2.4e-07 29.5 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.9 gi|352681942|ref|YP_004892466.1| - 1.1e-06 27.5 0.8 0.0011 17.7 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|352681942|ref|YP_004892466.1| - 3.2e-05 23.0 0.1 5.7e-05 22.1 0.0 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.17 gi|352681942|ref|YP_004892466.1| - 0.00032 19.6 0.5 0.00047 19.1 0.4 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|352681942|ref|YP_004892466.1| - 0.0012 17.9 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|352681942|ref|YP_004892466.1| - 0.0012 19.1 0.2 0.0062 16.9 0.0 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352681942|ref|YP_004892466.1| - 0.0031 17.2 0.3 0.0062 16.3 0.2 1.6 1 1 0 1 1 1 1 FAD-NAD(P)-binding GDI PF00996.13 gi|352681942|ref|YP_004892466.1| - 0.014 13.7 0.0 2.7 6.2 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor ThiF PF00899.16 gi|352681942|ref|YP_004892466.1| - 0.06 13.1 0.1 0.31 10.8 0.1 2.0 2 0 0 2 2 2 0 ThiF family Chlorosome_CsmC PF11098.3 gi|352681942|ref|YP_004892466.1| - 0.069 12.8 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Chlorosome envelope protein C NAD_binding_7 PF13241.1 gi|352681942|ref|YP_004892466.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|352681942|ref|YP_004892466.1| - 0.64 9.6 1.9 0.58 9.7 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MoaE PF02391.12 gi|352681943|ref|YP_004892467.1| - 2.8e-22 78.7 0.2 4.1e-22 78.1 0.2 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|352681943|ref|YP_004892467.1| - 2.7e-17 62.9 0.0 5.3e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|352681943|ref|YP_004892467.1| - 0.0043 16.5 0.1 0.011 15.1 0.0 1.7 2 0 0 2 2 2 1 Mut7-C ubiquitin MMR_HSR1 PF01926.18 gi|352681945|ref|YP_004892469.1| - 1.3e-18 67.0 0.0 2.4e-15 56.5 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|352681945|ref|YP_004892469.1| - 8.4e-11 41.3 0.1 5.7e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|352681945|ref|YP_004892469.1| - 3.3e-09 36.7 0.3 8.4e-05 22.4 0.0 3.1 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.22 gi|352681945|ref|YP_004892469.1| - 6e-05 22.5 0.0 0.002 17.5 0.0 2.7 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain PAS_8 PF13188.1 gi|352681945|ref|YP_004892469.1| - 0.00057 19.6 0.0 0.0015 18.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain DUF258 PF03193.11 gi|352681945|ref|YP_004892469.1| - 0.0018 17.5 0.0 0.0042 16.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|352681945|ref|YP_004892469.1| - 0.011 16.5 0.0 0.022 15.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain Arf PF00025.16 gi|352681945|ref|YP_004892469.1| - 0.011 15.0 0.0 0.031 13.5 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family AIG1 PF04548.11 gi|352681945|ref|YP_004892469.1| - 0.015 14.4 0.0 0.048 12.7 0.0 1.8 2 0 0 2 2 2 0 AIG1 family MobB PF03205.9 gi|352681945|ref|YP_004892469.1| - 0.019 14.6 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|352681945|ref|YP_004892469.1| - 0.036 14.5 0.0 0.11 13.0 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein AAA_18 PF13238.1 gi|352681945|ref|YP_004892469.1| - 0.065 13.5 0.0 0.15 12.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain ArgK PF03308.11 gi|352681945|ref|YP_004892469.1| - 0.13 11.0 0.0 0.28 9.9 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AMMECR1 PF01871.12 gi|352681946|ref|YP_004892470.1| - 7e-54 181.5 0.0 8.4e-54 181.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Imm26 PF15572.1 gi|352681946|ref|YP_004892470.1| - 0.13 12.4 0.0 0.3 11.2 0.0 1.6 2 0 0 2 2 2 0 Immunity protein 26 PhnA_Zn_Ribbon PF08274.7 gi|352681947|ref|YP_004892471.1| - 0.0012 18.6 0.4 0.0032 17.1 0.0 2.0 2 1 0 2 2 2 1 PhnA Zinc-Ribbon DUF4428 PF14471.1 gi|352681947|ref|YP_004892471.1| - 0.03 14.0 0.1 0.03 14.0 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Tnp_zf-ribbon_2 PF13842.1 gi|352681947|ref|YP_004892471.1| - 0.15 12.4 7.3 0.55 10.6 0.2 2.7 2 2 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-UDP PF14569.1 gi|352681947|ref|YP_004892471.1| - 1.7 8.4 6.0 2.5 7.8 4.2 1.3 1 0 0 1 1 1 0 Zinc-binding RING-finger zf-C3HC4_3 PF13920.1 gi|352681947|ref|YP_004892471.1| - 2.5 7.8 7.0 28 4.4 4.9 2.2 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|352681947|ref|YP_004892471.1| - 5.5 6.8 8.0 46 3.8 3.3 2.8 2 1 0 2 2 2 0 zinc-RING finger domain DNA_RNApol_7kD PF03604.8 gi|352681947|ref|YP_004892471.1| - 6.3 6.3 10.2 4.2 6.9 0.9 2.6 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit C1_3 PF07649.7 gi|352681947|ref|YP_004892471.1| - 7.5 6.6 9.1 15 5.7 1.9 3.3 3 1 0 3 3 3 0 C1-like domain Nol1_Nop2_Fmu PF01189.12 gi|352681948|ref|YP_004892472.1| - 2.1e-17 63.3 0.0 5.2e-17 62.1 0.0 1.6 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|352681948|ref|YP_004892472.1| - 8.7e-15 54.2 0.3 1.5e-14 53.4 0.2 1.3 1 0 0 1 1 1 1 PUA domain Methyltransf_15 PF09445.5 gi|352681948|ref|YP_004892472.1| - 0.00038 20.0 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|352681948|ref|YP_004892472.1| - 0.00054 20.5 0.0 0.0018 18.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|352681948|ref|YP_004892472.1| - 0.0013 18.7 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352681948|ref|YP_004892472.1| - 0.05 13.1 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PPAK PF02818.10 gi|352681948|ref|YP_004892472.1| - 0.14 12.0 2.2 0.27 11.1 1.5 1.4 1 0 0 1 1 1 0 PPAK motif HEAT_2 PF13646.1 gi|352681949|ref|YP_004892473.1| - 0.12 12.6 0.5 1.4 9.2 0.3 2.1 1 1 1 2 2 2 0 HEAT repeats IF-2B PF01008.12 gi|352681950|ref|YP_004892474.1| - 3.1e-66 223.2 0.0 3.6e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Mrr_cat PF04471.7 gi|352681952|ref|YP_004892476.1| - 1.9e-05 24.4 0.0 2.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease DUF91 PF01939.11 gi|352681952|ref|YP_004892476.1| - 0.0016 17.6 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF3209 PF11483.3 gi|352681952|ref|YP_004892476.1| - 0.0045 17.3 0.3 0.012 15.9 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3209) UPF0102 PF02021.12 gi|352681952|ref|YP_004892476.1| - 0.05 13.5 0.0 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 DUF234 PF03008.9 gi|352681952|ref|YP_004892476.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function Aldolase_2 PF10120.4 gi|352681953|ref|YP_004892477.1| - 6.9e-21 74.3 1.4 1.1e-20 73.6 1.0 1.4 1 0 0 1 1 1 1 Putative aldolase HTH_37 PF13744.1 gi|352681953|ref|YP_004892477.1| - 0.0053 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Topo-VIb_trans PF09239.6 gi|352681954|ref|YP_004892478.1| - 1.8e-19 69.8 0.0 3.3e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|352681954|ref|YP_004892478.1| - 7e-15 54.7 0.0 1.2e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|352681954|ref|YP_004892478.1| - 2.3e-11 43.4 0.0 3.9e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|352681954|ref|YP_004892478.1| - 0.054 12.0 0.0 0.079 11.4 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Topo-VIb_trans PF09239.6 gi|352681955|ref|YP_004892479.1| - 1.3e-19 70.2 0.1 2.7e-19 69.2 0.1 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer DASH_Dad3 PF08656.5 gi|352681955|ref|YP_004892479.1| - 0.024 14.3 0.7 0.044 13.4 0.5 1.5 1 0 0 1 1 1 0 DASH complex subunit Dad3 UPF0122 PF04297.9 gi|352681955|ref|YP_004892479.1| - 0.061 13.3 1.4 0.096 12.7 0.7 1.4 1 1 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TP6A_N PF04406.9 gi|352681956|ref|YP_004892480.1| - 2.1e-22 78.5 0.1 4.9e-22 77.3 0.0 1.7 2 0 0 2 2 2 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|352681956|ref|YP_004892480.1| - 0.0038 17.0 0.0 0.0074 16.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) DUF2868 PF11067.3 gi|352681956|ref|YP_004892480.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) PhoU PF01895.14 gi|352681957|ref|YP_004892481.1| - 6.2e-17 61.8 7.2 2.4e-16 59.9 3.4 2.4 2 0 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|352681957|ref|YP_004892481.1| - 8.8e-12 44.4 0.2 2.9e-11 42.8 0.1 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE TOBE PF03459.12 gi|352681957|ref|YP_004892481.1| - 0.015 15.4 0.0 0.038 14.0 0.0 1.7 1 0 0 1 1 1 0 TOBE domain Spc42p PF11544.3 gi|352681957|ref|YP_004892481.1| - 0.02 14.8 0.1 0.043 13.7 0.1 1.5 1 0 0 1 1 1 0 Spindle pole body component Spc42p Methyltransf_26 PF13659.1 gi|352681958|ref|YP_004892482.1| - 5.7e-06 26.3 0.1 2.2e-05 24.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|352681958|ref|YP_004892482.1| - 0.0077 15.3 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|352681958|ref|YP_004892482.1| - 0.02 15.4 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|352681958|ref|YP_004892482.1| - 0.02 14.2 0.2 0.11 11.8 0.1 2.1 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|352681958|ref|YP_004892482.1| - 0.074 13.5 0.1 0.18 12.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352681958|ref|YP_004892482.1| - 0.1 12.2 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|352681958|ref|YP_004892482.1| - 0.17 10.9 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HTH_11 PF08279.7 gi|352681959|ref|YP_004892483.1| - 0.0017 17.9 0.4 0.0036 16.9 0.3 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|352681959|ref|YP_004892483.1| - 0.0039 16.9 0.1 0.0085 15.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|352681959|ref|YP_004892483.1| - 0.0045 16.3 0.6 0.009 15.3 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|352681959|ref|YP_004892483.1| - 0.0065 16.1 0.9 0.021 14.4 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|352681959|ref|YP_004892483.1| - 0.011 16.0 0.4 0.021 15.1 0.3 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|352681959|ref|YP_004892483.1| - 0.012 15.2 0.1 0.028 14.1 0.1 1.5 1 0 0 1 1 1 0 MarR family HemN_C PF06969.11 gi|352681959|ref|YP_004892483.1| - 0.018 15.1 0.2 0.031 14.3 0.1 1.3 1 0 0 1 1 1 0 HemN C-terminal domain MarR_2 PF12802.2 gi|352681959|ref|YP_004892483.1| - 0.023 14.3 0.2 0.047 13.3 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.7 gi|352681959|ref|YP_004892483.1| - 0.057 12.9 0.2 0.11 12.1 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4576 PF15144.1 gi|352681959|ref|YP_004892483.1| - 0.072 12.7 1.5 6.9 6.3 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4576) VMA21 PF09446.5 gi|352681959|ref|YP_004892483.1| - 0.29 11.0 8.9 0.15 12.0 2.1 2.5 2 0 0 2 2 2 0 VMA21-like domain Alba PF01918.16 gi|352681960|ref|YP_004892484.1| - 2.9e-11 42.7 0.7 3.8e-11 42.4 0.5 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|352681960|ref|YP_004892484.1| - 0.11 12.1 1.2 0.19 11.3 0.9 1.6 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Antitoxin-MazE PF04014.13 gi|352681961|ref|YP_004892485.1| - 0.075 12.7 0.6 0.14 11.9 0.4 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE Actin PF00022.14 gi|352681962|ref|YP_004892486.1| - 4.1e-07 28.7 0.0 3.4e-06 25.7 0.0 2.3 1 1 0 1 1 1 1 Actin DUF3391 PF11871.3 gi|352681963|ref|YP_004892487.1| - 0.0042 17.2 0.1 0.0066 16.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3391) Band_7 PF01145.20 gi|352681964|ref|YP_004892488.1| - 0.0045 16.9 0.0 0.005 16.7 0.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family DUF3288 PF11691.3 gi|352681964|ref|YP_004892488.1| - 0.039 13.6 0.0 0.056 13.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3288) SMC_N PF02463.14 gi|352681965|ref|YP_004892489.1| - 2.5e-19 69.4 0.0 4.8e-19 68.4 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|352681965|ref|YP_004892489.1| - 4.5e-17 63.0 4.9 4.5e-17 63.0 3.4 4.7 1 1 1 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|352681965|ref|YP_004892489.1| - 3.5e-11 43.6 23.1 1.4e-06 28.4 2.1 3.7 1 1 2 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|352681965|ref|YP_004892489.1| - 8.8e-06 25.1 0.0 1.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Filament PF00038.16 gi|352681965|ref|YP_004892489.1| - 6.2e-05 22.6 39.9 0.0048 16.4 5.9 4.3 3 1 1 4 4 4 2 Intermediate filament protein DUF948 PF06103.6 gi|352681965|ref|YP_004892489.1| - 0.0003 20.5 8.7 0.36 10.7 0.0 6.2 6 2 2 8 8 7 1 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|352681965|ref|YP_004892489.1| - 0.0005 19.3 1.4 0.8 8.8 0.0 4.2 2 1 2 4 4 4 1 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|352681965|ref|YP_004892489.1| - 0.00085 19.5 12.5 0.31 11.3 0.1 6.0 4 2 2 6 6 6 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|352681965|ref|YP_004892489.1| - 0.0013 18.5 13.0 0.7 9.7 0.0 5.9 4 2 1 5 5 5 1 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_27 PF13514.1 gi|352681965|ref|YP_004892489.1| - 0.0025 15.6 36.0 0.055 11.1 9.0 4.5 4 1 0 4 4 4 2 AAA domain APG6 PF04111.7 gi|352681965|ref|YP_004892489.1| - 0.0026 16.8 43.7 0.033 13.2 3.1 4.2 2 2 2 4 4 4 3 Autophagy protein Apg6 IncA PF04156.9 gi|352681965|ref|YP_004892489.1| - 0.0076 15.8 54.5 0.0085 15.7 0.8 5.1 3 2 2 5 5 5 2 IncA protein ABC_tran PF00005.22 gi|352681965|ref|YP_004892489.1| - 0.01 16.1 0.1 0.01 16.1 0.1 4.0 2 2 0 2 2 2 1 ABC transporter GAS PF13851.1 gi|352681965|ref|YP_004892489.1| - 0.01 15.0 49.1 0.096 11.8 1.8 5.1 3 1 1 5 5 5 0 Growth-arrest specific micro-tubule binding Med9 PF07544.8 gi|352681965|ref|YP_004892489.1| - 0.015 15.0 2.2 0.015 15.0 1.5 6.3 6 1 1 7 7 7 0 RNA polymerase II transcription mediator complex subunit 9 V_ATPase_I PF01496.14 gi|352681965|ref|YP_004892489.1| - 0.015 13.2 33.5 0.029 12.2 6.7 3.1 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family Nsp1_C PF05064.8 gi|352681965|ref|YP_004892489.1| - 0.017 14.7 23.7 0.57 9.8 0.4 5.5 5 1 0 5 5 4 0 Nsp1-like C-terminal region DUF258 PF03193.11 gi|352681965|ref|YP_004892489.1| - 0.019 14.1 0.0 0.065 12.4 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DASH_Dad3 PF08656.5 gi|352681965|ref|YP_004892489.1| - 0.036 13.7 0.3 0.036 13.7 0.2 7.2 6 2 1 7 7 5 0 DASH complex subunit Dad3 MMR_HSR1 PF01926.18 gi|352681965|ref|YP_004892489.1| - 0.063 13.2 0.1 0.34 10.8 0.0 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase IMS PF00817.15 gi|352681965|ref|YP_004892489.1| - 0.14 11.9 3.9 2.2 8.0 2.7 2.7 1 1 0 1 1 1 0 impB/mucB/samB family DASH_Dam1 PF08653.5 gi|352681965|ref|YP_004892489.1| - 0.35 10.6 8.2 18 5.2 0.2 6.0 4 2 2 6 6 6 0 DASH complex subunit Dam1 ApoL PF05461.6 gi|352681965|ref|YP_004892489.1| - 0.4 9.9 0.0 0.4 9.9 0.0 4.0 3 1 1 4 4 4 0 Apolipoprotein L PilJ PF13675.1 gi|352681965|ref|YP_004892489.1| - 0.63 10.3 19.9 0.99 9.7 0.3 5.8 5 2 0 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term AAA_25 PF13481.1 gi|352681965|ref|YP_004892489.1| - 1.5 8.1 4.2 2.3 7.5 0.0 3.3 3 1 0 3 3 3 0 AAA domain Seryl_tRNA_N PF02403.17 gi|352681965|ref|YP_004892489.1| - 1.8 8.5 39.1 3.7 7.6 5.0 5.3 3 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Hemerythrin PF01814.18 gi|352681965|ref|YP_004892489.1| - 3.6 7.7 23.2 1.2 9.2 2.7 5.0 2 2 2 4 4 4 0 Hemerythrin HHE cation binding domain PqqD PF05402.7 gi|352681965|ref|YP_004892489.1| - 3.8 7.6 7.9 3.4 7.7 0.2 4.1 4 0 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) Fmp27_WPPW PF10359.4 gi|352681965|ref|YP_004892489.1| - 4 5.7 33.0 0.069 11.5 1.1 4.2 3 1 1 4 4 4 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.7 gi|352681965|ref|YP_004892489.1| - 4.7 6.9 23.0 0.42 10.3 0.2 5.4 3 2 1 5 5 5 0 Laminin Domain II Fib_alpha PF08702.5 gi|352681965|ref|YP_004892489.1| - 4.7 7.3 30.0 0.15 12.1 0.4 5.0 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|352681965|ref|YP_004892489.1| - 5.4 6.8 21.3 0.095 12.5 0.2 5.1 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) FUSC PF04632.7 gi|352681965|ref|YP_004892489.1| - 6.1 5.1 7.8 12 4.2 3.0 2.2 2 0 0 2 2 2 0 Fusaric acid resistance protein family DUF904 PF06005.7 gi|352681965|ref|YP_004892489.1| - 6.5 7.1 43.2 2.3 8.5 0.8 5.8 5 1 0 5 5 5 0 Protein of unknown function (DUF904) ADIP PF11559.3 gi|352681965|ref|YP_004892489.1| - 6.5 6.6 34.5 0.052 13.4 1.1 4.8 3 1 2 5 5 5 0 Afadin- and alpha -actinin-Binding DUF972 PF06156.8 gi|352681965|ref|YP_004892489.1| - 6.9 7.0 33.1 0.5 10.7 1.4 5.6 4 2 0 4 4 4 0 Protein of unknown function (DUF972) Prophage_tail PF06605.6 gi|352681966|ref|YP_004892490.1| - 0.047 12.6 0.2 0.075 11.9 0.2 1.2 1 0 0 1 1 1 0 Prophage endopeptidase tail TrmB PF01978.14 gi|352681967|ref|YP_004892491.1| - 6.1e-21 73.8 1.8 1.7e-20 72.4 0.0 2.5 2 2 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|352681967|ref|YP_004892491.1| - 2.7e-09 36.2 0.0 5e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|352681967|ref|YP_004892491.1| - 4.6e-07 29.2 0.0 8.6e-07 28.4 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|352681967|ref|YP_004892491.1| - 7.8e-07 28.5 0.3 5e-06 26.0 0.0 2.6 3 1 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|352681967|ref|YP_004892491.1| - 3.8e-05 23.3 0.1 0.00017 21.3 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|352681967|ref|YP_004892491.1| - 9.5e-05 22.1 0.1 0.0011 18.8 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.15 gi|352681967|ref|YP_004892491.1| - 0.00013 21.9 0.0 0.0015 18.5 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator DUF2250 PF10007.4 gi|352681967|ref|YP_004892491.1| - 0.0002 21.2 0.0 0.00059 19.7 0.0 1.8 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|352681967|ref|YP_004892491.1| - 0.00039 20.0 0.0 0.00075 19.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|352681967|ref|YP_004892491.1| - 0.0016 18.0 0.0 0.0041 16.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.11 gi|352681967|ref|YP_004892491.1| - 0.011 15.2 0.0 0.034 13.6 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|352681967|ref|YP_004892491.1| - 0.014 15.3 0.4 3.7 7.5 0.0 3.4 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|352681967|ref|YP_004892491.1| - 0.015 14.9 0.1 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|352681967|ref|YP_004892491.1| - 0.046 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein MarR PF01047.17 gi|352681967|ref|YP_004892491.1| - 0.047 13.3 0.0 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 MarR family Radical_SAM PF04055.16 gi|352681968|ref|YP_004892492.1| - 1e-20 74.6 0.2 4.7e-20 72.4 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|352681968|ref|YP_004892492.1| - 6.6e-07 29.3 0.0 1.9e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|352681968|ref|YP_004892492.1| - 6.9e-06 26.2 0.0 1.4e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-Di19 PF05605.7 gi|352681968|ref|YP_004892492.1| - 0.25 11.4 2.2 8.6 6.5 0.1 2.8 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Reo_sigmaC PF04582.7 gi|352681969|ref|YP_004892493.1| - 0.005 16.0 25.8 0.086 12.0 5.7 3.1 1 1 2 3 3 3 2 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|352681969|ref|YP_004892493.1| - 0.0089 15.8 8.8 0.12 12.2 0.8 3.7 3 1 1 4 4 4 1 Bacterial protein of unknown function (DUF948) COG2 PF06148.6 gi|352681969|ref|YP_004892493.1| - 0.017 14.9 6.7 5.6 6.8 0.0 3.8 1 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 MtlR PF05068.7 gi|352681969|ref|YP_004892493.1| - 0.018 14.4 0.1 0.041 13.3 0.1 1.5 1 0 0 1 1 1 0 Mannitol repressor Spc7 PF08317.6 gi|352681969|ref|YP_004892493.1| - 0.045 12.4 3.7 0.079 11.6 1.3 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein IFT57 PF10498.4 gi|352681969|ref|YP_004892493.1| - 0.06 12.0 1.4 0.11 11.2 1.0 1.4 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF4201 PF13870.1 gi|352681969|ref|YP_004892493.1| - 0.065 12.6 0.1 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Laminin_II PF06009.7 gi|352681969|ref|YP_004892493.1| - 0.48 10.1 10.7 3 7.6 3.2 3.3 2 1 1 3 3 3 0 Laminin Domain II Apc4 PF12896.2 gi|352681969|ref|YP_004892493.1| - 0.67 9.2 4.6 0.99 8.6 0.3 3.0 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 4 NPV_P10 PF05531.7 gi|352681969|ref|YP_004892493.1| - 0.87 9.8 13.7 33 4.8 0.2 5.0 2 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein TFR_dimer PF04253.10 gi|352681969|ref|YP_004892493.1| - 1 8.9 4.5 3.3 7.2 0.0 3.0 2 1 0 2 2 2 0 Transferrin receptor-like dimerisation domain Syntaxin-6_N PF09177.6 gi|352681969|ref|YP_004892493.1| - 1.6 9.2 5.1 15 6.1 1.8 3.1 2 1 1 3 3 3 0 Syntaxin 6, N-terminal Baculo_PEP_C PF04513.7 gi|352681969|ref|YP_004892493.1| - 2.5 7.9 35.5 4.8 7.0 6.9 4.4 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus His_binding PF02098.11 gi|352681969|ref|YP_004892493.1| - 6.9 6.4 8.3 19 5.0 0.7 2.8 2 0 0 2 2 2 0 Tick histamine binding protein ABC_tran PF00005.22 gi|352681970|ref|YP_004892494.1| - 1e-30 106.8 0.0 1.4e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352681970|ref|YP_004892494.1| - 6.3e-17 62.4 0.1 2e-10 41.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|352681970|ref|YP_004892494.1| - 9.3e-05 21.8 0.1 0.0002 20.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|352681970|ref|YP_004892494.1| - 0.00012 21.6 0.0 0.014 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|352681970|ref|YP_004892494.1| - 0.00012 21.3 0.2 0.13 11.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|352681970|ref|YP_004892494.1| - 0.00026 20.2 0.0 0.00041 19.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|352681970|ref|YP_004892494.1| - 0.00037 20.5 0.2 0.0006 19.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|352681970|ref|YP_004892494.1| - 0.00062 19.9 0.5 0.012 15.7 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|352681970|ref|YP_004892494.1| - 0.0015 18.9 0.2 0.0038 17.5 0.2 1.6 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|352681970|ref|YP_004892494.1| - 0.0036 16.7 0.7 0.091 12.1 0.0 2.7 2 1 1 3 3 3 1 AAA domain SbcCD_C PF13558.1 gi|352681970|ref|YP_004892494.1| - 0.0051 16.6 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|352681970|ref|YP_004892494.1| - 0.0052 16.2 0.0 0.0081 15.6 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|352681970|ref|YP_004892494.1| - 0.0063 16.2 0.1 0.041 13.6 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|352681970|ref|YP_004892494.1| - 0.0064 16.8 0.1 0.079 13.2 0.0 2.4 2 1 1 3 3 3 1 AAA domain ABC_ATPase PF09818.4 gi|352681970|ref|YP_004892494.1| - 0.018 13.6 0.5 2.3 6.6 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|352681970|ref|YP_004892494.1| - 0.019 15.7 0.0 0.076 13.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|352681970|ref|YP_004892494.1| - 0.037 13.0 0.0 6.7 5.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|352681970|ref|YP_004892494.1| - 0.04 13.8 0.0 0.063 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|352681970|ref|YP_004892494.1| - 0.054 13.2 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|352681970|ref|YP_004892494.1| - 0.055 13.4 0.0 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|352681970|ref|YP_004892494.1| - 0.084 11.7 0.2 0.14 11.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF1341 PF07071.6 gi|352681970|ref|YP_004892494.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) AAA_30 PF13604.1 gi|352681970|ref|YP_004892494.1| - 0.13 11.8 0.1 0.74 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain MacB_PCD PF12704.2 gi|352681971|ref|YP_004892495.1| - 9.9e-21 74.3 0.5 9.9e-21 74.3 0.4 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|352681971|ref|YP_004892495.1| - 9.2e-16 57.7 8.6 9.2e-16 57.7 6.0 3.1 3 0 0 3 3 3 1 FtsX-like permease family MMPL PF03176.10 gi|352681972|ref|YP_004892496.1| - 1.2e-65 221.4 36.7 1.4e-37 129.1 9.6 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|352681972|ref|YP_004892496.1| - 0.0021 17.5 14.1 0.0022 17.4 3.4 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Peptidase_M50 PF02163.17 gi|352681972|ref|YP_004892496.1| - 0.0084 15.0 3.2 2 7.3 0.0 2.7 2 1 0 2 2 2 2 Peptidase family M50 HAD_2 PF13419.1 gi|352681973|ref|YP_004892497.1| - 2.7e-17 63.5 0.0 3.4e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|352681973|ref|YP_004892497.1| - 2e-08 34.9 0.1 5.3e-08 33.5 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|352681973|ref|YP_004892497.1| - 1.1e-07 31.4 0.0 2e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|352681973|ref|YP_004892497.1| - 1.1e-05 25.7 0.0 1.5e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DAO PF01266.19 gi|352681974|ref|YP_004892498.1| - 2.4e-08 33.2 2.5 4.9e-06 25.6 0.3 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|352681974|ref|YP_004892498.1| - 3.3e-07 30.2 0.6 0.00015 21.6 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|352681974|ref|YP_004892498.1| - 7.4e-07 29.4 2.2 0.0013 19.1 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|352681974|ref|YP_004892498.1| - 7.8e-07 29.1 2.1 9.1e-06 25.6 0.9 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|352681974|ref|YP_004892498.1| - 4.7e-06 25.6 6.2 4.5e-05 22.4 0.2 3.0 4 0 0 4 4 4 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|352681974|ref|YP_004892498.1| - 8.5e-05 22.7 0.1 0.27 11.2 0.2 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|352681974|ref|YP_004892498.1| - 8.5e-05 21.7 0.2 0.00066 18.8 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|352681974|ref|YP_004892498.1| - 0.0001 21.5 0.1 0.00039 19.5 0.0 1.9 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|352681974|ref|YP_004892498.1| - 0.0027 16.8 0.8 0.0061 15.6 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|352681974|ref|YP_004892498.1| - 0.0066 16.6 0.2 4.9 7.4 0.0 2.3 2 0 0 2 2 2 2 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|352681974|ref|YP_004892498.1| - 0.016 14.1 1.1 0.019 13.9 0.2 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein HI0933_like PF03486.9 gi|352681974|ref|YP_004892498.1| - 0.054 11.9 0.2 0.22 9.9 0.1 1.9 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.17 gi|352681974|ref|YP_004892498.1| - 0.31 9.8 3.6 0.12 11.1 0.1 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A NERD PF08378.6 gi|352681975|ref|YP_004892499.1| - 0.0002 21.5 0.0 0.00029 21.0 0.0 1.2 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.7 gi|352681975|ref|YP_004892499.1| - 0.0031 17.2 0.0 0.0043 16.8 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease DinB_2 PF12867.2 gi|352681977|ref|YP_004892501.1| - 0.0048 17.2 0.0 0.0071 16.6 0.0 1.2 1 0 0 1 1 1 1 DinB superfamily IncA PF04156.9 gi|352681977|ref|YP_004892501.1| - 0.0064 16.1 0.4 0.01 15.4 0.1 1.5 2 0 0 2 2 2 1 IncA protein DUF883 PF05957.8 gi|352681977|ref|YP_004892501.1| - 0.95 9.8 3.6 34 4.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF2975 PF11188.3 gi|352681978|ref|YP_004892502.1| - 0.095 12.4 0.1 0.099 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) PIRT PF15099.1 gi|352681978|ref|YP_004892502.1| - 0.11 11.7 0.4 0.22 10.7 0.3 1.6 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family NfeD PF01957.13 gi|352681979|ref|YP_004892503.1| - 8e-21 74.6 5.0 8e-21 74.6 3.4 2.5 1 1 1 2 2 2 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.11 gi|352681979|ref|YP_004892503.1| - 0.0018 17.1 0.0 0.0031 16.3 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Band_7 PF01145.20 gi|352681980|ref|YP_004892504.1| - 1.1e-33 116.5 1.9 1.1e-33 116.5 1.3 1.7 1 1 1 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|352681980|ref|YP_004892504.1| - 0.0056 16.2 0.0 0.0093 15.5 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family Glyco_hydro_80 PF13647.1 gi|352681980|ref|YP_004892504.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A ATP-synt_D PF01813.12 gi|352681981|ref|YP_004892505.1| - 1.4e-39 135.6 7.8 1.7e-39 135.4 5.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Hemerythrin PF01814.18 gi|352681981|ref|YP_004892505.1| - 0.034 14.3 0.5 0.11 12.6 0.4 1.8 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Nsp1_C PF05064.8 gi|352681982|ref|YP_004892506.1| - 0.024 14.2 1.7 0.024 14.2 1.1 1.1 1 0 0 1 1 1 0 Nsp1-like C-terminal region DUF1664 PF07889.7 gi|352681982|ref|YP_004892506.1| - 0.034 13.9 0.9 0.037 13.8 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) PI31_Prot_N PF11566.3 gi|352681982|ref|YP_004892506.1| - 0.038 13.5 0.3 0.04 13.5 0.2 1.0 1 0 0 1 1 1 0 PI31 proteasome regulator N-terminal RasGAP_C PF03836.10 gi|352681982|ref|YP_004892506.1| - 0.042 13.5 1.4 0.045 13.4 1.0 1.1 1 0 0 1 1 1 0 RasGAP C-terminus DegS PF05384.6 gi|352681982|ref|YP_004892506.1| - 0.057 12.6 3.3 0.065 12.4 2.3 1.0 1 0 0 1 1 1 0 Sensor protein DegS Fzo_mitofusin PF04799.8 gi|352681982|ref|YP_004892506.1| - 0.058 12.7 0.8 0.059 12.7 0.5 1.1 1 0 0 1 1 1 0 fzo-like conserved region EntA_Immun PF08951.5 gi|352681982|ref|YP_004892506.1| - 0.059 13.5 2.3 0.068 13.3 1.6 1.2 1 0 0 1 1 1 0 Enterocin A Immunity DUF2031 PF09592.5 gi|352681982|ref|YP_004892506.1| - 0.076 12.1 3.1 0.079 12.1 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) Ferritin PF00210.19 gi|352681982|ref|YP_004892506.1| - 0.08 12.6 0.9 0.079 12.7 0.6 1.1 1 0 0 1 1 1 0 Ferritin-like domain BRX_N PF13713.1 gi|352681982|ref|YP_004892506.1| - 0.082 12.3 2.2 5 6.6 0.1 2.2 2 0 0 2 2 2 0 Transcription factor BRX N-terminal domain DUF2968 PF11180.3 gi|352681982|ref|YP_004892506.1| - 0.087 12.1 0.6 0.09 12.1 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Baculo_PEP_C PF04513.7 gi|352681982|ref|YP_004892506.1| - 0.09 12.6 0.4 0.088 12.6 0.3 1.0 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_40 PF14493.1 gi|352681982|ref|YP_004892506.1| - 0.097 12.8 1.6 0.11 12.7 1.1 1.0 1 0 0 1 1 1 0 Helix-turn-helix domain Sipho_Gp157 PF05565.6 gi|352681982|ref|YP_004892506.1| - 0.099 12.2 2.9 0.11 12.0 2.0 1.1 1 0 0 1 1 1 0 Siphovirus Gp157 AKNA PF12443.3 gi|352681982|ref|YP_004892506.1| - 0.1 12.6 1.8 0.13 12.2 1.2 1.3 1 1 0 1 1 1 0 AT-hook-containing transcription factor Peptidase_M41 PF01434.13 gi|352681982|ref|YP_004892506.1| - 0.11 11.9 2.5 0.12 11.8 1.7 1.0 1 0 0 1 1 1 0 Peptidase family M41 Sec5 PF15469.1 gi|352681982|ref|YP_004892506.1| - 0.11 12.1 1.6 0.11 12.1 1.1 1.0 1 0 0 1 1 1 0 Exocyst complex component Sec5 SPX PF03105.14 gi|352681982|ref|YP_004892506.1| - 0.16 11.7 1.6 0.2 11.4 1.1 1.3 1 1 0 1 1 1 0 SPX domain FerA PF08165.6 gi|352681982|ref|YP_004892506.1| - 0.16 11.6 2.4 1.1 8.9 0.3 2.0 1 1 1 2 2 2 0 FerA (NUC095) domain TBPIP PF07106.8 gi|352681982|ref|YP_004892506.1| - 0.18 11.3 4.6 0.17 11.3 3.2 1.0 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ECM11 PF15463.1 gi|352681982|ref|YP_004892506.1| - 0.19 12.0 1.7 0.21 11.8 1.2 1.1 1 0 0 1 1 1 0 Extracellular mutant protein 11 IncA PF04156.9 gi|352681982|ref|YP_004892506.1| - 0.19 11.2 3.7 0.2 11.2 2.6 1.1 1 0 0 1 1 1 0 IncA protein Cauli_AT PF03233.8 gi|352681982|ref|YP_004892506.1| - 0.21 11.2 3.1 0.21 11.2 2.1 1.1 1 0 0 1 1 1 0 Aphid transmission protein DUF4071 PF13281.1 gi|352681982|ref|YP_004892506.1| - 0.21 10.3 1.3 0.21 10.4 0.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) DNA_topoisoIV PF00521.15 gi|352681982|ref|YP_004892506.1| - 0.23 10.2 2.8 0.23 10.2 2.0 1.0 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Syntaxin-6_N PF09177.6 gi|352681982|ref|YP_004892506.1| - 0.28 11.6 2.6 0.51 10.7 1.8 1.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Phasin PF05597.6 gi|352681982|ref|YP_004892506.1| - 0.28 10.9 2.6 0.31 10.8 1.8 1.1 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF1258 PF06869.7 gi|352681982|ref|YP_004892506.1| - 0.3 10.1 1.2 0.32 10.0 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) XkdW PF09636.5 gi|352681982|ref|YP_004892506.1| - 0.31 10.9 2.2 0.38 10.6 1.5 1.2 1 0 0 1 1 1 0 XkdW protein DUF2205 PF10224.4 gi|352681982|ref|YP_004892506.1| - 0.32 10.6 2.9 0.4 10.2 2.0 1.2 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) Med9 PF07544.8 gi|352681982|ref|YP_004892506.1| - 0.45 10.2 4.6 0.79 9.4 3.2 1.5 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Med21 PF11221.3 gi|352681982|ref|YP_004892506.1| - 0.58 10.1 4.5 0.61 10.0 3.1 1.1 1 0 0 1 1 1 0 Subunit 21 of Mediator complex Laminin_II PF06009.7 gi|352681982|ref|YP_004892506.1| - 2.2 8.0 5.1 23 4.7 2.1 1.9 1 1 0 1 1 1 0 Laminin Domain II DivIC PF04977.10 gi|352681982|ref|YP_004892506.1| - 2.4 7.6 5.9 2.2 7.8 1.5 1.9 1 1 1 2 2 2 0 Septum formation initiator Ribosomal_L29 PF00831.18 gi|352681982|ref|YP_004892506.1| - 4.8 6.9 10.2 3.1 7.5 1.3 2.2 1 1 1 2 2 2 0 Ribosomal L29 protein TSC22 PF01166.13 gi|352681982|ref|YP_004892506.1| - 5.3 7.0 7.0 5.2 7.1 0.8 2.1 1 1 1 2 2 2 0 TSC-22/dip/bun family FlxA PF14282.1 gi|352681982|ref|YP_004892506.1| - 5.8 6.9 8.4 8 6.4 5.8 1.3 1 1 0 1 1 1 0 FlxA-like protein ATP-synt_C PF00137.16 gi|352681983|ref|YP_004892507.1| - 2.6e-22 78.4 13.5 2.6e-22 78.4 9.3 1.4 2 0 0 2 2 2 1 ATP synthase subunit C DIM PF08194.7 gi|352681983|ref|YP_004892507.1| - 0.022 14.6 1.3 0.037 13.9 0.0 2.0 2 1 0 2 2 2 0 DIM protein ATG22 PF11700.3 gi|352681983|ref|YP_004892507.1| - 0.031 12.7 1.5 0.036 12.5 1.0 1.3 1 1 0 1 1 1 0 Vacuole effluxer Atg22 like DUF3094 PF11293.3 gi|352681983|ref|YP_004892507.1| - 0.094 12.1 0.2 0.094 12.1 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) MFS_1 PF07690.11 gi|352681983|ref|YP_004892507.1| - 0.19 10.3 9.0 0.21 10.2 6.2 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily PMT_2 PF13231.1 gi|352681983|ref|YP_004892507.1| - 0.42 10.5 5.0 0.55 10.1 3.5 1.2 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase FtsX PF02687.16 gi|352681983|ref|YP_004892507.1| - 1.8 8.3 8.2 0.52 10.0 3.6 1.6 2 0 0 2 2 2 0 FtsX-like permease family DsbB PF02600.11 gi|352681983|ref|YP_004892507.1| - 3.4 7.4 9.3 6.3 6.5 1.5 2.0 1 1 1 2 2 2 0 Disulfide bond formation protein DsbB vATP-synt_AC39 PF01992.11 gi|352681984|ref|YP_004892508.1| - 3.6e-13 49.3 0.1 5e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_B PF00430.13 gi|352681985|ref|YP_004892509.1| - 3.8e-06 26.7 13.9 0.00026 20.8 1.2 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) Scm3 PF10384.4 gi|352681985|ref|YP_004892509.1| - 0.0011 18.4 3.2 0.072 12.5 0.2 2.4 2 0 0 2 2 2 1 Centromere protein Scm3 IpaD PF06511.6 gi|352681985|ref|YP_004892509.1| - 0.0044 16.0 0.2 0.005 15.8 0.2 1.2 1 0 0 1 1 1 1 Invasion plasmid antigen IpaD Alpha-2-MRAP_N PF06400.6 gi|352681985|ref|YP_004892509.1| - 0.018 14.6 3.8 0.16 11.6 2.6 2.1 1 1 0 1 1 1 0 Alpha-2-macroglobulin RAP, N-terminal domain Prominin PF05478.6 gi|352681985|ref|YP_004892509.1| - 0.02 12.4 6.9 0.022 12.3 4.8 1.0 1 0 0 1 1 1 0 Prominin Cse1 PF08506.5 gi|352681985|ref|YP_004892509.1| - 0.02 13.4 6.8 0.048 12.2 0.9 2.0 1 1 1 2 2 2 0 Cse1 AF0941-like PF14591.1 gi|352681985|ref|YP_004892509.1| - 0.022 14.8 12.6 0.028 14.4 8.8 1.1 1 0 0 1 1 1 0 AF0941-like V-ATPase_G PF03179.10 gi|352681985|ref|YP_004892509.1| - 0.022 15.0 13.3 0.099 12.9 2.5 2.2 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit Apolipoprotein PF01442.13 gi|352681985|ref|YP_004892509.1| - 0.023 14.2 6.5 0.03 13.8 4.5 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain ALMT PF11744.3 gi|352681985|ref|YP_004892509.1| - 0.034 12.8 2.3 0.038 12.6 1.6 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF2365 PF10157.4 gi|352681985|ref|YP_004892509.1| - 0.058 13.2 2.3 0.085 12.7 1.1 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2365) Xpo1 PF08389.7 gi|352681985|ref|YP_004892509.1| - 0.063 13.1 5.8 1.1 9.1 4.0 2.0 1 1 0 1 1 1 0 Exportin 1-like protein Syntaxin_2 PF14523.1 gi|352681985|ref|YP_004892509.1| - 0.066 13.2 9.4 0.1 12.6 6.5 1.4 1 1 0 1 1 1 0 Syntaxin-like protein PA28_beta PF02252.13 gi|352681985|ref|YP_004892509.1| - 0.086 12.2 3.7 0.1 12.0 2.1 1.4 1 1 0 1 1 1 0 Proteasome activator pa28 beta subunit DivIVA PF05103.8 gi|352681985|ref|YP_004892509.1| - 0.096 12.7 13.7 0.14 12.2 9.5 1.2 1 0 0 1 1 1 0 DivIVA protein HAUS-augmin3 PF14932.1 gi|352681985|ref|YP_004892509.1| - 0.13 11.4 11.7 0.14 11.2 8.1 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 ISG65-75 PF11727.3 gi|352681985|ref|YP_004892509.1| - 0.13 11.3 10.6 0.15 11.1 7.4 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF3510 PF12022.3 gi|352681985|ref|YP_004892509.1| - 0.13 12.4 7.5 1.9 8.6 5.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3510) Kdo_hydroxy PF11004.3 gi|352681985|ref|YP_004892509.1| - 0.13 11.2 0.8 0.7 8.8 0.2 1.9 1 1 1 2 2 2 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase Phasin PF05597.6 gi|352681985|ref|YP_004892509.1| - 0.13 11.9 7.2 0.66 9.7 0.4 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Maf1 PF09174.5 gi|352681985|ref|YP_004892509.1| - 0.15 11.9 3.8 0.14 12.0 1.9 1.5 1 1 1 2 2 2 0 Maf1 regulator CRISPR_Cse1 PF09481.5 gi|352681985|ref|YP_004892509.1| - 0.15 10.7 0.6 0.18 10.5 0.4 1.0 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) DUF1444 PF07285.6 gi|352681985|ref|YP_004892509.1| - 0.16 11.2 9.7 0.51 9.6 3.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1444) DUF4167 PF13763.1 gi|352681985|ref|YP_004892509.1| - 0.17 11.9 3.2 0.38 10.8 1.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4167) DUF445 PF04286.7 gi|352681985|ref|YP_004892509.1| - 0.2 11.1 9.6 0.22 10.9 6.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF3798 PF12683.2 gi|352681985|ref|YP_004892509.1| - 0.2 10.7 4.6 0.23 10.5 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) RHD3 PF05879.7 gi|352681985|ref|YP_004892509.1| - 0.2 9.5 6.9 0.23 9.3 4.8 1.0 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Borrelia_lipo_1 PF05714.6 gi|352681985|ref|YP_004892509.1| - 0.2 10.6 14.3 0.73 8.8 9.9 1.7 1 1 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein ECH PF00378.15 gi|352681985|ref|YP_004892509.1| - 0.21 10.6 2.3 0.24 10.4 1.6 1.1 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family HrpE PF06188.7 gi|352681985|ref|YP_004892509.1| - 0.23 11.1 5.2 0.36 10.5 1.0 2.0 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E L1R_F9L PF02442.12 gi|352681985|ref|YP_004892509.1| - 0.27 10.6 6.7 0.078 12.4 2.1 1.7 1 1 1 2 2 2 0 Lipid membrane protein of large eukaryotic DNA viruses AATF-Che1 PF13339.1 gi|352681985|ref|YP_004892509.1| - 0.28 11.3 5.3 0.42 10.7 3.7 1.3 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor GrpB PF04229.9 gi|352681985|ref|YP_004892509.1| - 0.3 10.7 3.0 7.7 6.2 0.3 2.2 2 0 0 2 2 2 0 GrpB protein YpjP PF14005.1 gi|352681985|ref|YP_004892509.1| - 0.31 10.7 5.9 0.38 10.5 4.1 1.2 1 0 0 1 1 1 0 YpjP-like protein DUF725 PF05267.7 gi|352681985|ref|YP_004892509.1| - 0.34 10.8 3.7 5.5 6.9 2.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF725) Mer2 PF09074.5 gi|352681985|ref|YP_004892509.1| - 0.34 10.8 11.0 1.1 9.1 7.6 1.7 1 1 0 1 1 1 0 Mer2 Thy1 PF02511.10 gi|352681985|ref|YP_004892509.1| - 0.41 9.9 3.3 0.4 10.0 1.2 1.8 1 1 1 2 2 2 0 Thymidylate synthase complementing protein MbeB_N PF04837.7 gi|352681985|ref|YP_004892509.1| - 0.42 10.7 4.2 0.34 11.0 0.6 2.4 1 1 1 2 2 2 0 MbeB-like, N-term conserved region Phage_Mu_Gam PF07352.7 gi|352681985|ref|YP_004892509.1| - 0.42 10.1 15.9 0.15 11.5 2.9 2.1 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein HK97-gp10_like PF04883.7 gi|352681985|ref|YP_004892509.1| - 0.45 11.4 3.8 2.6 9.0 1.9 2.3 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component DUF4404 PF14357.1 gi|352681985|ref|YP_004892509.1| - 0.52 10.7 9.1 1.6 9.1 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) PIN_4 PF13638.1 gi|352681985|ref|YP_004892509.1| - 0.59 10.2 5.0 0.79 9.8 3.5 1.2 1 0 0 1 1 1 0 PIN domain Poty_PP PF08440.5 gi|352681985|ref|YP_004892509.1| - 0.61 9.1 6.2 0.69 8.9 4.3 1.1 1 0 0 1 1 1 0 Potyviridae polyprotein Muted PF14942.1 gi|352681985|ref|YP_004892509.1| - 0.62 9.9 10.3 0.77 9.6 7.2 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein Helicase_C_2 PF13307.1 gi|352681985|ref|YP_004892509.1| - 0.62 9.9 3.9 3.8 7.4 2.7 1.9 1 1 0 1 1 1 0 Helicase C-terminal domain RRF PF01765.14 gi|352681985|ref|YP_004892509.1| - 0.65 9.4 14.7 1.4 8.3 2.3 2.1 1 1 1 2 2 2 0 Ribosome recycling factor Carbpep_Y_N PF05388.6 gi|352681985|ref|YP_004892509.1| - 0.71 10.0 4.3 9.9 6.3 1.0 2.1 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide Mitofilin PF09731.4 gi|352681985|ref|YP_004892509.1| - 0.72 8.4 15.8 0.92 8.0 10.9 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DASH_Duo1 PF08651.5 gi|352681985|ref|YP_004892509.1| - 0.72 9.4 6.6 1.6 8.3 4.2 2.0 1 1 0 1 1 1 0 DASH complex subunit Duo1 DUF3355 PF11835.3 gi|352681985|ref|YP_004892509.1| - 0.91 9.3 3.1 1.1 9.0 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3355) Sec5 PF15469.1 gi|352681985|ref|YP_004892509.1| - 0.95 9.1 8.8 2.8 7.6 6.1 1.8 1 1 0 1 1 1 0 Exocyst complex component Sec5 5_3_exonuc PF01367.15 gi|352681985|ref|YP_004892509.1| - 0.96 9.7 5.2 1.3 9.2 0.5 2.2 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold DUF3150 PF11348.3 gi|352681985|ref|YP_004892509.1| - 0.98 8.4 7.3 0.55 9.2 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3150) RNA_pol_Rpb1_4 PF05000.12 gi|352681985|ref|YP_004892509.1| - 0.99 9.1 8.5 0.97 9.2 1.5 2.1 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 4 Peptidase_M41 PF01434.13 gi|352681985|ref|YP_004892509.1| - 1.2 8.5 10.0 2.1 7.7 1.3 2.1 1 1 1 2 2 2 0 Peptidase family M41 DUF607 PF04678.8 gi|352681985|ref|YP_004892509.1| - 1.3 8.9 6.1 2.5 7.9 4.2 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF607 Taeniidae_ag PF05596.6 gi|352681985|ref|YP_004892509.1| - 1.3 8.8 8.1 0.95 9.3 0.2 3.2 2 2 1 3 3 3 0 Taeniidae antigen DUF4375 PF14300.1 gi|352681985|ref|YP_004892509.1| - 1.5 8.7 5.3 2.6 8.0 0.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4375) CDC37_N PF03234.9 gi|352681985|ref|YP_004892509.1| - 1.7 8.9 10.0 2.3 8.5 6.9 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding CemA PF03040.9 gi|352681985|ref|YP_004892509.1| - 2 7.9 6.6 1.3 8.5 3.4 1.5 1 1 1 2 2 2 0 CemA family OmpH PF03938.9 gi|352681985|ref|YP_004892509.1| - 2.5 8.0 11.5 4.3 7.2 8.0 1.5 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Atg8 PF02991.11 gi|352681985|ref|YP_004892509.1| - 2.7 8.0 7.2 0.97 9.4 0.8 2.1 2 0 0 2 2 2 0 Autophagy protein Atg8 ubiquitin like TMF_TATA_bd PF12325.3 gi|352681985|ref|YP_004892509.1| - 2.7 7.7 13.5 3.9 7.2 2.1 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF3573 PF12097.3 gi|352681985|ref|YP_004892509.1| - 3.2 6.2 5.4 3.4 6.1 3.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) Rad50_zn_hook PF04423.9 gi|352681985|ref|YP_004892509.1| - 3.4 7.1 11.2 3.6 7.1 0.2 3.5 2 2 2 4 4 3 0 Rad50 zinc hook motif DUF87 PF01935.12 gi|352681985|ref|YP_004892509.1| - 3.7 7.2 7.7 5.7 6.6 5.4 1.3 1 1 0 1 1 1 0 Domain of unknown function DUF87 DUF4407 PF14362.1 gi|352681985|ref|YP_004892509.1| - 4.3 6.2 7.1 1.7 7.5 3.3 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Fib_alpha PF08702.5 gi|352681985|ref|YP_004892509.1| - 4.3 7.4 11.6 14 5.8 8.0 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF948 PF06103.6 gi|352681985|ref|YP_004892509.1| - 5 7.0 8.8 4 7.3 2.4 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Remorin_C PF03763.8 gi|352681985|ref|YP_004892509.1| - 5.9 6.4 13.1 68 3.0 8.8 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region HXXSHH PF07586.6 gi|352681985|ref|YP_004892509.1| - 6 5.6 5.8 8.2 5.2 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1552) DUF1788 PF08747.6 gi|352681985|ref|YP_004892509.1| - 7 6.5 7.5 8.1 6.3 1.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1788) YtxH PF12732.2 gi|352681985|ref|YP_004892509.1| - 7.8 6.9 9.5 1.2e+02 3.1 6.6 2.1 1 1 0 1 1 1 0 YtxH-like protein DUF2203 PF09969.4 gi|352681985|ref|YP_004892509.1| - 8.9 6.5 8.3 77 3.5 5.7 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF4284 PF14112.1 gi|352681985|ref|YP_004892509.1| - 9.3 6.7 8.3 4.5 7.7 2.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4284) KaiC PF06745.8 gi|352681986|ref|YP_004892510.1| - 1e-65 221.0 0.3 1.2e-65 220.8 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|352681986|ref|YP_004892510.1| - 7.4e-07 28.7 0.0 9.9e-07 28.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|352681986|ref|YP_004892510.1| - 0.00041 19.5 0.0 0.00064 18.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.6 gi|352681986|ref|YP_004892510.1| - 0.0014 17.5 0.1 0.0022 16.9 0.1 1.2 1 0 0 1 1 1 1 Rad51 GvpD PF07088.6 gi|352681986|ref|YP_004892510.1| - 0.0098 14.2 1.2 0.061 11.6 0.8 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein ResIII PF04851.10 gi|352681986|ref|YP_004892510.1| - 0.014 15.2 0.2 0.025 14.4 0.1 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|352681986|ref|YP_004892510.1| - 0.014 14.8 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase ATP-synt_ab PF00006.20 gi|352681986|ref|YP_004892510.1| - 0.02 14.3 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|352681986|ref|YP_004892510.1| - 0.023 13.6 0.0 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PAXNEB PF05625.6 gi|352681986|ref|YP_004892510.1| - 0.024 13.5 0.5 0.039 12.7 0.3 1.3 1 0 0 1 1 1 0 PAXNEB protein AAA_16 PF13191.1 gi|352681986|ref|YP_004892510.1| - 0.05 13.5 1.2 0.53 10.2 0.8 2.1 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|352681986|ref|YP_004892510.1| - 0.09 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Zot PF05707.7 gi|352681986|ref|YP_004892510.1| - 0.11 11.9 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Thymidylate_kin PF02223.12 gi|352681987|ref|YP_004892511.1| - 4.2e-46 156.6 0.0 4.9e-46 156.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|352681987|ref|YP_004892511.1| - 4.9e-07 30.0 0.0 9.1e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|352681987|ref|YP_004892511.1| - 3.5e-05 23.8 0.0 4.9e-05 23.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352681987|ref|YP_004892511.1| - 6.9e-05 23.6 0.5 0.00018 22.3 0.3 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|352681987|ref|YP_004892511.1| - 0.0085 16.0 0.0 0.019 14.8 0.0 1.5 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_33 PF13671.1 gi|352681987|ref|YP_004892511.1| - 0.014 15.2 0.0 0.11 12.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|352681987|ref|YP_004892511.1| - 0.041 13.1 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain GATase PF00117.23 gi|352681988|ref|YP_004892512.1| - 9.8e-27 93.6 0.0 1.1e-26 93.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|352681988|ref|YP_004892512.1| - 1.2e-05 24.8 0.0 0.025 14.0 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.9 gi|352681988|ref|YP_004892512.1| - 0.00015 21.4 0.0 0.00031 20.3 0.0 1.6 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|352681988|ref|YP_004892512.1| - 0.00036 20.1 0.0 0.0012 18.4 0.0 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_5 PF13507.1 gi|352681988|ref|YP_004892512.1| - 0.13 11.1 0.0 2.4 7.0 0.0 2.1 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain HisG PF01634.13 gi|352681989|ref|YP_004892513.1| - 2.4e-44 150.8 0.2 3.1e-44 150.4 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|352681989|ref|YP_004892513.1| - 1.9e-19 69.3 0.2 3.7e-19 68.4 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain Aminotran_1_2 PF00155.16 gi|352681990|ref|YP_004892514.1| - 9.2e-27 93.9 0.0 1.3e-26 93.4 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|352681990|ref|YP_004892514.1| - 0.023 13.3 0.0 0.028 13.0 0.0 1.1 1 0 0 1 1 1 0 Allinase PRA-CH PF01502.13 gi|352681991|ref|YP_004892515.1| - 1e-30 105.1 0.1 1.5e-30 104.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.12 gi|352681992|ref|YP_004892516.1| - 3.5e-13 49.6 0.1 3.9e-13 49.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|352681992|ref|YP_004892516.1| - 2e-05 24.4 0.3 2.9e-05 23.9 0.2 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Rad21_Rec8 PF04824.11 gi|352681992|ref|YP_004892516.1| - 0.11 11.7 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein Histidinol_dh PF00815.15 gi|352681993|ref|YP_004892517.1| - 7.6e-60 202.6 0.0 9.6e-60 202.3 0.0 1.1 1 0 0 1 1 1 1 Histidinol dehydrogenase His_biosynth PF00977.16 gi|352681994|ref|YP_004892518.1| - 7e-82 274.1 1.4 8e-82 273.9 1.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|352681994|ref|YP_004892518.1| - 1.7e-07 30.4 0.2 0.00039 19.4 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|352681994|ref|YP_004892518.1| - 1.4e-06 27.4 0.0 8e-06 24.9 0.0 1.9 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|352681994|ref|YP_004892518.1| - 3.3e-06 26.3 0.2 0.051 12.6 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|352681994|ref|YP_004892518.1| - 1.4e-05 24.4 1.8 0.051 12.7 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|352681994|ref|YP_004892518.1| - 3.9e-05 22.8 0.4 0.0086 15.1 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|352681994|ref|YP_004892518.1| - 0.00014 21.2 0.1 0.00036 19.8 0.1 1.8 2 0 0 2 2 2 1 PcrB family G3P_antiterm PF04309.7 gi|352681994|ref|YP_004892518.1| - 0.021 13.8 0.3 0.061 12.3 0.0 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.20 gi|352681994|ref|YP_004892518.1| - 0.025 13.5 1.3 0.095 11.5 0.1 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|352681994|ref|YP_004892518.1| - 0.12 11.2 1.0 0.24 10.2 0.7 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase IGPD PF00475.13 gi|352681995|ref|YP_004892519.1| - 1.7e-45 154.4 0.0 2e-45 154.2 0.0 1.0 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase DUF1717 PF05414.6 gi|352681995|ref|YP_004892519.1| - 0.013 15.9 0.0 0.061 13.7 0.0 1.9 2 0 0 2 2 2 0 Viral domain of unknown function (DUF1717) His_biosynth PF00977.16 gi|352681996|ref|YP_004892520.1| - 3.9e-49 166.9 0.1 4.4e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|352681996|ref|YP_004892520.1| - 0.077 11.5 0.1 1.7 7.1 0.0 2.2 2 0 0 2 2 2 0 Tryptophan synthase alpha chain PcrB PF01884.12 gi|352681996|ref|YP_004892520.1| - 0.091 11.9 0.1 2.9 7.0 0.0 2.1 2 0 0 2 2 2 0 PcrB family GATase PF00117.23 gi|352681997|ref|YP_004892521.1| - 2e-37 128.5 0.0 3.3e-37 127.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.17 gi|352681997|ref|YP_004892521.1| - 1.5e-31 107.9 0.0 4.8e-31 106.3 0.0 1.8 2 0 0 2 2 2 1 GMP synthase C terminal domain Peptidase_C26 PF07722.8 gi|352681997|ref|YP_004892521.1| - 9.9e-15 54.5 0.0 5.2e-14 52.2 0.0 2.2 2 1 0 2 2 2 1 Peptidase C26 NAD_synthase PF02540.12 gi|352681997|ref|YP_004892521.1| - 2.6e-11 42.8 0.0 5.7e-08 31.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.15 gi|352681997|ref|YP_004892521.1| - 0.00046 19.7 0.0 0.00072 19.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|352681997|ref|YP_004892521.1| - 0.0041 16.4 0.0 0.034 13.4 0.0 2.1 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|352681997|ref|YP_004892521.1| - 0.0044 15.6 0.0 0.019 13.5 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|352681997|ref|YP_004892521.1| - 0.0061 16.0 0.0 0.018 14.5 0.0 1.8 2 0 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.14 gi|352681997|ref|YP_004892521.1| - 0.023 14.4 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|352681997|ref|YP_004892521.1| - 0.1 12.0 0.0 0.2 11.0 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CitMHS PF03600.11 gi|352681998|ref|YP_004892522.1| - 1.4e-20 73.2 38.2 1.6e-19 69.7 21.3 2.1 2 0 0 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|352681998|ref|YP_004892522.1| - 2.6 6.8 34.8 0.28 10.0 1.3 3.5 2 2 0 3 3 3 0 Sodium:sulfate symporter transmembrane region DUF4147 PF13660.1 gi|352681999|ref|YP_004892523.1| - 6.7e-48 162.8 0.5 9.1e-48 162.4 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|352681999|ref|YP_004892523.1| - 5e-21 74.8 0.1 1.1e-20 73.7 0.1 1.5 1 0 0 1 1 1 1 MOFRL family LigB PF02900.13 gi|352681999|ref|YP_004892523.1| - 0.0045 16.0 0.0 0.0067 15.4 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase ILVD_EDD PF00920.16 gi|352682000|ref|YP_004892524.1| - 1.5e-206 686.9 0.0 1.6e-206 686.7 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family DUF192 PF02643.10 gi|352682001|ref|YP_004892525.1| - 1.1e-17 63.6 0.0 1.3e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 adh_short_C2 PF13561.1 gi|352682002|ref|YP_004892526.1| - 5.2e-34 118.0 0.2 6.8e-34 117.6 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|352682002|ref|YP_004892526.1| - 2.7e-32 111.9 0.9 4.3e-32 111.3 0.1 1.6 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|352682002|ref|YP_004892526.1| - 3.8e-13 49.5 0.1 1.5e-12 47.5 0.0 1.8 1 1 1 2 2 2 1 KR domain Epimerase PF01370.16 gi|352682002|ref|YP_004892526.1| - 8.6e-07 28.6 0.6 2.6e-05 23.7 0.0 2.6 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|352682002|ref|YP_004892526.1| - 0.00017 20.4 0.0 0.00025 19.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Eno-Rase_NADH_b PF12242.3 gi|352682002|ref|YP_004892526.1| - 0.0066 16.2 0.3 0.015 15.0 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase THF_DHG_CYH_C PF02882.14 gi|352682002|ref|YP_004892526.1| - 0.012 14.7 0.1 0.025 13.6 0.0 1.7 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.1 gi|352682002|ref|YP_004892526.1| - 0.018 15.0 1.0 0.043 13.8 0.7 1.7 1 1 0 1 1 1 0 NADH(P)-binding DFP PF04127.10 gi|352682002|ref|YP_004892526.1| - 0.044 13.3 0.0 0.096 12.2 0.0 1.6 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Saccharop_dh PF03435.13 gi|352682002|ref|YP_004892526.1| - 0.051 12.5 0.1 0.078 11.9 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Sugar_tr PF00083.19 gi|352682003|ref|YP_004892527.1| - 1.1e-16 60.5 25.2 2.5e-15 55.9 6.8 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|352682003|ref|YP_004892527.1| - 2.5e-14 52.7 45.7 2.5e-14 52.7 31.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily YbjM PF11045.3 gi|352682003|ref|YP_004892527.1| - 4.8 6.9 8.2 1.1 9.0 0.6 2.8 2 1 1 3 3 3 0 Putative inner membrane protein of Enterobacteriaceae FAD-oxidase_C PF02913.14 gi|352682004|ref|YP_004892528.1| - 2.1e-47 161.5 0.0 2.7e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|352682004|ref|YP_004892528.1| - 2.8e-37 127.2 0.3 6.5e-37 126.1 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain HK PF02110.10 gi|352682004|ref|YP_004892528.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family DUF162 PF02589.10 gi|352682005|ref|YP_004892529.1| - 1.9e-51 174.2 0.1 2.8e-51 173.7 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|352682005|ref|YP_004892529.1| - 3.7e-08 33.2 1.6 6.3e-08 32.5 1.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352682005|ref|YP_004892529.1| - 1.6e-06 28.4 3.7 0.0047 17.3 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352682005|ref|YP_004892529.1| - 0.00019 21.6 3.6 0.0061 16.8 3.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352682005|ref|YP_004892529.1| - 0.00063 20.0 5.1 0.0016 18.8 3.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682005|ref|YP_004892529.1| - 0.00067 19.4 4.5 0.0061 16.3 3.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|352682005|ref|YP_004892529.1| - 0.0013 18.3 1.9 0.007 15.9 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.1 gi|352682005|ref|YP_004892529.1| - 0.011 15.9 6.7 0.14 12.4 5.3 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352682005|ref|YP_004892529.1| - 0.55 10.1 4.9 1.2 8.9 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352682005|ref|YP_004892529.1| - 2 9.2 6.7 9.8 7.0 4.7 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|352682005|ref|YP_004892529.1| - 8.9 6.0 9.6 13 5.6 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DHO_dh PF01180.16 gi|352682006|ref|YP_004892530.1| - 7.4e-29 100.6 0.0 1.4e-27 96.4 0.0 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|352682006|ref|YP_004892530.1| - 0.0057 15.8 0.3 0.017 14.2 0.1 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase Pribosyltran PF00156.22 gi|352682007|ref|YP_004892531.1| - 1.5e-14 53.7 1.1 1.9e-13 50.2 0.8 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|352682007|ref|YP_004892531.1| - 2.1e-05 23.8 0.0 2.6e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|352682007|ref|YP_004892531.1| - 0.00044 19.6 0.0 0.00061 19.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase Glyco_trans_4_2 PF13477.1 gi|352682007|ref|YP_004892531.1| - 0.052 13.3 0.2 5.5 6.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like PyrI PF01948.13 gi|352682008|ref|YP_004892532.1| - 1.5e-37 127.4 1.6 1.9e-37 127.1 1.1 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|352682008|ref|YP_004892532.1| - 5.7e-17 60.8 0.4 9e-17 60.2 0.2 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OMPdecase PF00215.19 gi|352682009|ref|YP_004892533.1| - 7.6e-15 54.9 0.8 1.4e-13 50.7 0.6 2.1 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family OTCace_N PF02729.16 gi|352682010|ref|YP_004892534.1| - 4.8e-47 159.1 0.0 6.7e-47 158.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|352682010|ref|YP_004892534.1| - 6e-37 126.9 0.0 1e-36 126.1 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF2250 PF10007.4 gi|352682011|ref|YP_004892535.1| - 4.8e-07 29.6 0.1 1.8e-06 27.7 0.1 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|352682011|ref|YP_004892535.1| - 0.029 14.0 0.1 3 7.5 0.0 2.2 2 0 0 2 2 2 0 MarR family DAO PF01266.19 gi|352682012|ref|YP_004892536.1| - 4.3e-21 75.2 2.6 1.4e-19 70.2 1.8 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|352682012|ref|YP_004892536.1| - 6.9e-06 26.0 1.3 2.5e-05 24.2 0.9 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|352682012|ref|YP_004892536.1| - 0.0025 16.9 2.0 0.0071 15.4 0.5 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|352682012|ref|YP_004892536.1| - 0.0033 16.3 0.1 0.079 11.7 0.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|352682012|ref|YP_004892536.1| - 0.014 15.3 3.0 0.019 14.9 1.0 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|352682012|ref|YP_004892536.1| - 0.077 13.4 1.5 1.3 9.4 1.3 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|352682012|ref|YP_004892536.1| - 0.1 11.4 2.2 1.6 7.4 0.8 2.1 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.9 gi|352682012|ref|YP_004892536.1| - 0.57 8.5 3.3 1.4 7.3 0.7 2.0 2 0 0 2 2 2 0 HI0933-like protein DUF1049 PF06305.6 gi|352682013|ref|YP_004892537.1| - 0.045 13.2 1.0 0.07 12.6 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) DUF2771 PF10969.3 gi|352682013|ref|YP_004892537.1| - 0.12 11.6 0.0 0.13 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) Lipoprotein_19 PF13617.1 gi|352682015|ref|YP_004892539.1| - 0.12 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 YnbE-like lipoprotein AA_kinase PF00696.23 gi|352682016|ref|YP_004892540.1| - 2.3e-33 115.7 0.0 2.7e-33 115.4 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family tRNA-synt_His PF13393.1 gi|352682017|ref|YP_004892541.1| - 3.2e-65 220.2 0.1 5e-65 219.5 0.0 1.3 2 0 0 2 2 2 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|352682017|ref|YP_004892541.1| - 3.3e-18 65.8 0.1 7.8e-18 64.6 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|352682017|ref|YP_004892541.1| - 7.4e-13 48.2 0.4 1.7e-12 47.0 0.3 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|352682017|ref|YP_004892541.1| - 0.00017 20.9 0.1 0.0013 18.0 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|352682017|ref|YP_004892541.1| - 0.011 14.5 0.2 2.3 6.9 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) Saccharop_dh PF03435.13 gi|352682018|ref|YP_004892542.1| - 5.2e-44 150.7 0.0 2.8e-42 145.0 0.0 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|352682018|ref|YP_004892542.1| - 0.00042 19.7 0.1 0.00091 18.6 0.1 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|352682018|ref|YP_004892542.1| - 0.00052 20.3 0.1 0.0027 18.0 0.0 2.1 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|352682018|ref|YP_004892542.1| - 0.003 16.9 0.9 0.0062 15.9 0.6 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|352682018|ref|YP_004892542.1| - 0.016 14.8 0.1 0.033 13.8 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|352682018|ref|YP_004892542.1| - 0.028 14.5 0.0 1.3 9.2 0.0 3.1 2 1 0 2 2 2 0 CoA binding domain NAD_binding_10 PF13460.1 gi|352682018|ref|YP_004892542.1| - 0.036 14.0 0.1 0.22 11.5 0.1 2.0 1 1 1 2 2 2 0 NADH(P)-binding F420_oxidored PF03807.12 gi|352682018|ref|YP_004892542.1| - 0.045 14.1 0.0 0.12 12.7 0.0 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.16 gi|352682018|ref|YP_004892542.1| - 0.1 12.1 0.1 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|352682018|ref|YP_004892542.1| - 0.1 12.6 0.3 0.33 10.9 0.2 1.8 2 0 0 2 2 2 0 TrkA-N domain Spc42p PF11544.3 gi|352682019|ref|YP_004892543.1| - 0.03 14.2 0.1 0.064 13.1 0.1 1.5 1 0 0 1 1 1 0 Spindle pole body component Spc42p OrfB_Zn_ribbon PF07282.6 gi|352682021|ref|YP_004892545.1| - 0.00056 19.5 0.0 0.00061 19.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF520 PF04461.8 gi|352682022|ref|YP_004892546.1| - 0.0023 17.8 0.1 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF520) RNA_binding PF01877.12 gi|352682023|ref|YP_004892547.1| - 7.9e-24 83.9 0.0 1e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 RNA binding Proteasome PF00227.21 gi|352682024|ref|YP_004892548.1| - 6.7e-58 195.1 0.0 1.5e-57 193.9 0.0 1.5 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|352682024|ref|YP_004892548.1| - 1.6e-13 49.6 0.1 1.6e-13 49.6 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|352682026|ref|YP_004892550.1| - 1.2e-27 95.5 0.1 1.9e-27 94.8 0.1 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|352682026|ref|YP_004892550.1| - 5.5e-25 87.4 0.4 8.1e-25 86.9 0.3 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain RuvC PF02075.12 gi|352682026|ref|YP_004892550.1| - 0.1 12.3 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Crossover junction endodeoxyribonuclease RuvC Cmyb_C PF09316.5 gi|352682026|ref|YP_004892550.1| - 0.4 10.3 2.9 0.88 9.2 0.9 1.9 1 1 1 2 2 2 0 C-myb, C-terminal KH_1 PF00013.24 gi|352682027|ref|YP_004892551.1| - 0.00034 20.1 0.0 0.0011 18.5 0.0 1.9 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|352682027|ref|YP_004892551.1| - 0.008 16.2 0.0 0.027 14.5 0.0 1.9 2 0 0 2 2 2 1 S1 RNA binding domain KH_2 PF07650.12 gi|352682027|ref|YP_004892551.1| - 0.077 12.5 0.2 0.25 10.9 0.1 1.9 1 0 0 1 1 1 0 KH domain ECR1_N PF14382.1 gi|352682027|ref|YP_004892551.1| - 0.13 11.5 0.0 1.4 8.2 0.0 2.4 2 0 0 2 2 2 0 Exosome complex exonuclease RRP4 N-terminal region RNase_PH PF01138.16 gi|352682028|ref|YP_004892552.1| - 1e-36 126.1 0.0 1.4e-36 125.7 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|352682028|ref|YP_004892552.1| - 2.4e-15 56.2 0.0 4.8e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|352682029|ref|YP_004892553.1| - 2.6e-23 82.7 0.0 5.5e-23 81.7 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|352682029|ref|YP_004892553.1| - 1.2e-10 41.1 0.1 2.5e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.14 gi|352682030|ref|YP_004892554.1| - 6.8e-31 106.0 0.8 7.9e-31 105.7 0.5 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family UPF0547 PF10571.4 gi|352682030|ref|YP_004892554.1| - 3.7e-05 23.3 0.7 8.8e-05 22.1 0.5 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|352682030|ref|YP_004892554.1| - 0.00045 19.8 1.1 0.0022 17.6 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|352682030|ref|YP_004892554.1| - 0.0019 18.3 1.0 0.62 10.4 0.1 2.4 2 0 0 2 2 2 1 Zinc-finger double domain zf-tcix PF14952.1 gi|352682030|ref|YP_004892554.1| - 0.002 17.4 5.0 0.22 10.8 0.1 2.5 3 0 0 3 3 2 2 Putative treble-clef, zinc-finger, Zn-binding Zn_Tnp_IS1595 PF12760.2 gi|352682030|ref|YP_004892554.1| - 0.002 17.8 2.0 0.0032 17.2 1.4 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain IBR PF01485.16 gi|352682030|ref|YP_004892554.1| - 0.0032 17.2 0.1 0.005 16.6 0.1 1.2 1 0 0 1 1 1 1 IBR domain zf-C2H2_4 PF13894.1 gi|352682030|ref|YP_004892554.1| - 0.013 15.7 0.8 0.14 12.5 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF1610 PF07754.6 gi|352682030|ref|YP_004892554.1| - 0.02 14.9 6.1 0.47 10.6 0.4 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) zf-LITAF-like PF10601.4 gi|352682030|ref|YP_004892554.1| - 0.045 13.6 0.3 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|352682030|ref|YP_004892554.1| - 0.047 13.1 0.5 0.68 9.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|352682030|ref|YP_004892554.1| - 0.064 12.8 3.0 2.1 8.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352682030|ref|YP_004892554.1| - 0.066 12.4 3.0 2.8 7.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|352682030|ref|YP_004892554.1| - 0.08 12.9 1.5 12 6.0 0.2 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|352682030|ref|YP_004892554.1| - 0.097 12.6 1.2 7.9 6.5 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF3797 PF12677.2 gi|352682030|ref|YP_004892554.1| - 0.11 12.0 0.6 6.3 6.5 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF164 PF02591.10 gi|352682030|ref|YP_004892554.1| - 0.11 12.2 3.8 0.84 9.5 0.3 2.5 2 1 1 3 3 2 0 Putative zinc ribbon domain HypA PF01155.14 gi|352682030|ref|YP_004892554.1| - 0.12 12.0 0.1 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2225 PF09986.4 gi|352682030|ref|YP_004892554.1| - 0.14 11.6 0.2 0.2 11.0 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) C1_1 PF00130.17 gi|352682030|ref|YP_004892554.1| - 0.14 11.8 0.8 0.2 11.3 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RanBP PF00641.13 gi|352682030|ref|YP_004892554.1| - 0.14 11.2 0.3 0.14 11.2 0.2 1.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF4379 PF14311.1 gi|352682030|ref|YP_004892554.1| - 0.15 11.8 5.5 2.6 7.9 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4379) zinc_ribbon_4 PF13717.1 gi|352682030|ref|YP_004892554.1| - 0.16 11.6 3.8 3.3 7.4 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|352682030|ref|YP_004892554.1| - 0.17 11.6 0.8 15 5.4 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) PhnA_Zn_Ribbon PF08274.7 gi|352682030|ref|YP_004892554.1| - 0.19 11.5 1.0 0.64 9.8 0.7 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-Sec23_Sec24 PF04810.10 gi|352682030|ref|YP_004892554.1| - 0.28 10.7 4.7 6.4 6.4 0.4 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C2H2 PF00096.21 gi|352682030|ref|YP_004892554.1| - 0.28 11.5 2.4 2.3 8.7 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C4_Topoisom PF01396.14 gi|352682030|ref|YP_004892554.1| - 0.29 10.6 5.7 1.2 8.6 0.1 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|352682030|ref|YP_004892554.1| - 0.71 9.1 7.2 4.6 6.5 0.6 2.6 2 1 1 3 3 3 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|352682030|ref|YP_004892554.1| - 0.89 9.1 6.6 3.6 7.2 4.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|352682030|ref|YP_004892554.1| - 1 9.2 4.4 3.9 7.4 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin zf-CCHC_5 PF14787.1 gi|352682030|ref|YP_004892554.1| - 5 6.7 6.2 19 4.8 0.1 3.0 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger DUF35_N PF12172.3 gi|352682030|ref|YP_004892554.1| - 7.1 6.6 6.3 27 4.8 0.7 2.5 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Brix PF04427.13 gi|352682031|ref|YP_004892555.1| - 7.2e-14 51.8 0.0 7.9e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Brix domain Pcc1 PF09341.5 gi|352682032|ref|YP_004892556.1| - 0.002 18.1 0.3 0.0023 17.9 0.2 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|352682033|ref|YP_004892557.1| - 7.8e-26 89.9 14.7 8.9e-26 89.7 10.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit Tropomyosin_1 PF12718.2 gi|352682033|ref|YP_004892557.1| - 0.0064 16.3 9.7 0.25 11.1 2.3 2.0 2 0 0 2 2 2 2 Tropomyosin like Prominin PF05478.6 gi|352682033|ref|YP_004892557.1| - 0.011 13.3 1.7 0.013 13.0 1.2 1.0 1 0 0 1 1 1 0 Prominin DUF4510 PF14971.1 gi|352682033|ref|YP_004892557.1| - 0.011 15.8 3.7 0.012 15.7 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) Pet127 PF08634.5 gi|352682033|ref|YP_004892557.1| - 0.029 13.5 0.4 0.035 13.2 0.3 1.1 1 0 0 1 1 1 0 Mitochondrial protein Pet127 Init_tRNA_PT PF04179.7 gi|352682033|ref|YP_004892557.1| - 0.031 13.1 1.8 0.035 12.9 1.3 1.0 1 0 0 1 1 1 0 Initiator tRNA phosphoribosyl transferase DUF2458 PF10454.4 gi|352682033|ref|YP_004892557.1| - 0.042 13.7 5.0 0.061 13.2 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) DUF848 PF05852.6 gi|352682033|ref|YP_004892557.1| - 0.043 13.6 6.8 0.12 12.2 4.6 1.8 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) Myosin_tail_1 PF01576.14 gi|352682033|ref|YP_004892557.1| - 0.048 11.3 9.4 0.055 11.1 6.5 1.0 1 0 0 1 1 1 0 Myosin tail Gon7 PF08738.5 gi|352682033|ref|YP_004892557.1| - 0.053 13.5 2.9 0.076 13.0 0.1 2.2 2 1 0 2 2 2 0 Gon7 family Toxin_trans PF07952.7 gi|352682033|ref|YP_004892557.1| - 0.056 12.3 1.4 0.065 12.1 1.0 1.1 1 0 0 1 1 1 0 Clostridium neurotoxin, Translocation domain DUF3584 PF12128.3 gi|352682033|ref|YP_004892557.1| - 0.081 10.2 7.6 0.12 9.6 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Macoilin PF09726.4 gi|352682033|ref|YP_004892557.1| - 0.087 11.0 7.2 0.11 10.8 5.0 1.0 1 0 0 1 1 1 0 Transmembrane protein DUF1002 PF06207.6 gi|352682033|ref|YP_004892557.1| - 0.11 11.7 2.5 0.076 12.3 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) Nup54 PF13874.1 gi|352682033|ref|YP_004892557.1| - 0.11 12.1 5.2 1.3 8.6 0.5 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 PspA_IM30 PF04012.7 gi|352682033|ref|YP_004892557.1| - 0.15 11.3 10.8 0.81 9.0 7.5 1.8 1 1 0 1 1 1 0 PspA/IM30 family TACC PF05010.9 gi|352682033|ref|YP_004892557.1| - 0.17 11.6 6.2 1 9.1 4.3 1.8 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) Utp12 PF04003.7 gi|352682033|ref|YP_004892557.1| - 0.2 11.5 2.6 0.69 9.8 0.2 2.2 1 1 0 2 2 2 0 Dip2/Utp12 Family TPR_MLP1_2 PF07926.7 gi|352682033|ref|YP_004892557.1| - 0.3 10.8 11.7 1.3 8.7 1.2 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein CDC37_N PF03234.9 gi|352682033|ref|YP_004892557.1| - 0.48 10.7 4.4 0.78 10.0 3.1 1.3 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding HAUS6_N PF14661.1 gi|352682033|ref|YP_004892557.1| - 0.54 9.5 8.0 0.36 10.1 3.6 1.8 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF948 PF06103.6 gi|352682033|ref|YP_004892557.1| - 0.87 9.4 3.5 0.8 9.6 0.8 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TMCO5 PF14992.1 gi|352682033|ref|YP_004892557.1| - 0.91 8.6 11.0 1.7 7.7 7.6 1.4 1 1 0 1 1 1 0 TMCO5 family DivIC PF04977.10 gi|352682033|ref|YP_004892557.1| - 1.2 8.7 13.5 1.9 8.0 2.9 2.3 2 0 0 2 2 2 0 Septum formation initiator Prefoldin PF02996.12 gi|352682033|ref|YP_004892557.1| - 1.3 8.6 10.8 2 8.1 2.1 2.2 1 1 1 2 2 2 0 Prefoldin subunit IFT57 PF10498.4 gi|352682033|ref|YP_004892557.1| - 1.5 7.4 9.4 2.8 6.5 1.2 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF4515 PF14988.1 gi|352682033|ref|YP_004892557.1| - 1.5 8.4 14.6 12 5.4 10.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) Angiomotin_C PF12240.3 gi|352682033|ref|YP_004892557.1| - 1.8 7.9 11.2 16 4.9 8.1 1.9 1 1 0 1 1 1 0 Angiomotin C terminal Spc24 PF08286.6 gi|352682033|ref|YP_004892557.1| - 1.9 8.1 10.5 1.9e+02 1.7 7.2 2.1 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Cor1 PF04803.7 gi|352682033|ref|YP_004892557.1| - 2.3 7.9 12.1 5.4 6.7 8.4 1.6 1 1 0 1 1 1 0 Cor1/Xlr/Xmr conserved region Enkurin PF13864.1 gi|352682033|ref|YP_004892557.1| - 2.5 8.3 11.2 0.71 10.1 0.7 2.6 1 1 0 2 2 2 0 Calmodulin-binding Snapin_Pallidin PF14712.1 gi|352682033|ref|YP_004892557.1| - 3.5 7.9 9.5 5.1 7.4 1.1 2.3 2 0 0 2 2 2 0 Snapin/Pallidin DUF4140 PF13600.1 gi|352682033|ref|YP_004892557.1| - 3.6 8.0 11.4 3.8 8.0 1.2 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) LUC7 PF03194.10 gi|352682033|ref|YP_004892557.1| - 3.7 6.9 7.1 16 4.9 3.7 1.9 1 1 1 2 2 2 0 LUC7 N_terminus Snf7 PF03357.16 gi|352682033|ref|YP_004892557.1| - 4 6.8 11.6 0.94 8.8 2.9 2.2 1 1 0 2 2 2 0 Snf7 DUF3086 PF11285.3 gi|352682033|ref|YP_004892557.1| - 4 6.1 10.7 0.9 8.2 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) Fib_alpha PF08702.5 gi|352682033|ref|YP_004892557.1| - 4.4 7.4 6.8 8.1 6.5 4.7 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family AKNA PF12443.3 gi|352682033|ref|YP_004892557.1| - 4.7 7.2 8.6 27 4.8 5.4 2.3 1 1 1 2 2 2 0 AT-hook-containing transcription factor bZIP_1 PF00170.16 gi|352682033|ref|YP_004892557.1| - 5.2 7.1 13.5 2.1 8.3 3.1 3.0 3 1 0 3 3 3 0 bZIP transcription factor Syntaxin PF00804.20 gi|352682033|ref|YP_004892557.1| - 5.2 7.2 8.6 26 5.0 2.8 2.4 1 1 1 2 2 2 0 Syntaxin Cauli_AT PF03233.8 gi|352682033|ref|YP_004892557.1| - 5.8 6.5 6.5 7.7 6.2 0.2 2.0 1 1 1 2 2 2 0 Aphid transmission protein TBPIP PF07106.8 gi|352682033|ref|YP_004892557.1| - 6.2 6.3 12.9 7.3 6.1 3.1 2.1 1 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Bacillus_HBL PF05791.6 gi|352682033|ref|YP_004892557.1| - 6.6 6.0 8.4 9.8 5.5 1.8 2.0 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF972 PF06156.8 gi|352682033|ref|YP_004892557.1| - 7 7.0 9.6 10 6.5 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Spc7 PF08317.6 gi|352682033|ref|YP_004892557.1| - 7.7 5.0 11.3 33 3.0 7.9 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF1640 PF07798.6 gi|352682033|ref|YP_004892557.1| - 9.9 6.1 9.5 22 5.0 6.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DHH PF01368.15 gi|352682035|ref|YP_004892559.1| - 3.7e-12 46.1 0.0 5.3e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|352682035|ref|YP_004892559.1| - 1.4e-08 34.2 0.9 3.6e-08 32.9 0.6 1.7 1 0 0 1 1 1 1 DHHA1 domain CbiG_N PF11760.3 gi|352682035|ref|YP_004892559.1| - 0.017 14.8 0.1 0.047 13.3 0.1 1.8 1 0 0 1 1 1 0 Cobalamin synthesis G N-terminal DEDD_Tnp_IS110 PF01548.12 gi|352682035|ref|YP_004892559.1| - 0.025 14.2 0.1 0.59 9.7 0.0 2.6 2 1 1 3 3 3 0 Transposase ETF PF01012.16 gi|352682035|ref|YP_004892559.1| - 0.13 11.9 1.3 3.1 7.5 0.0 3.0 2 2 1 3 3 3 0 Electron transfer flavoprotein domain PhnA_Zn_Ribbon PF08274.7 gi|352682036|ref|YP_004892560.1| - 0.088 12.6 0.9 7.6 6.4 0.0 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ResIII PF04851.10 gi|352682038|ref|YP_004892562.1| - 2.5e-31 108.9 0.0 6.5e-29 101.0 0.0 3.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|352682038|ref|YP_004892562.1| - 9.2e-19 67.0 0.1 1.7e-18 66.2 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|352682038|ref|YP_004892562.1| - 5.9e-14 51.9 0.0 1.8e-13 50.3 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|352682038|ref|YP_004892562.1| - 3.9e-11 42.2 0.0 9.5e-09 34.4 0.0 2.6 1 1 1 3 3 3 2 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|352682038|ref|YP_004892562.1| - 0.00048 19.8 0.1 0.015 15.0 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain IstB_IS21 PF01695.12 gi|352682038|ref|YP_004892562.1| - 0.039 13.3 0.0 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein Zot PF05707.7 gi|352682038|ref|YP_004892562.1| - 0.055 12.9 0.0 0.082 12.3 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|352682038|ref|YP_004892562.1| - 0.13 12.3 0.1 1.7 8.7 0.1 2.5 1 1 0 1 1 1 0 AAA domain CTP_transf_2 PF01467.21 gi|352682039|ref|YP_004892563.1| - 1.4e-06 28.4 0.0 2.4e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|352682039|ref|YP_004892563.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.5 2 0 0 2 2 2 0 FAD synthetase Peptidase_M28 PF04389.12 gi|352682040|ref|YP_004892564.1| - 1.4e-07 31.4 0.0 2.2e-06 27.5 0.0 2.1 1 1 0 1 1 1 1 Peptidase family M28 Aldo_ket_red PF00248.16 gi|352682041|ref|YP_004892565.1| - 1.9e-62 210.7 0.0 2.2e-62 210.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family EamA PF00892.15 gi|352682042|ref|YP_004892566.1| - 5.7e-13 48.9 37.1 5.2e-10 39.4 9.5 2.4 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|352682042|ref|YP_004892566.1| - 0.0081 15.8 0.7 0.0081 15.8 0.5 3.0 2 1 1 3 3 3 1 Triose-phosphate Transporter family NTP_transf_3 PF12804.2 gi|352682043|ref|YP_004892567.1| - 5.3e-38 130.6 0.1 6.5e-38 130.3 0.1 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|352682043|ref|YP_004892567.1| - 0.00013 21.6 0.0 0.00017 21.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.11 gi|352682043|ref|YP_004892567.1| - 0.0098 14.8 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like IspD PF01128.14 gi|352682043|ref|YP_004892567.1| - 0.061 12.8 0.0 0.08 12.4 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COXG PF06240.8 gi|352682044|ref|YP_004892568.1| - 1.5e-22 79.7 0.0 1.8e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF4460 PF14687.1 gi|352682045|ref|YP_004892569.1| - 0.039 13.7 0.2 0.086 12.5 0.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4460) DUF948 PF06103.6 gi|352682045|ref|YP_004892569.1| - 0.066 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) tRNA_deacylase PF04414.7 gi|352682046|ref|YP_004892570.1| - 8e-39 132.9 0.0 1e-38 132.5 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ADH_N PF08240.7 gi|352682047|ref|YP_004892571.1| - 1.1e-32 111.9 0.1 1.7e-32 111.4 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|352682047|ref|YP_004892571.1| - 1.4e-18 66.7 0.0 1.7e-16 59.9 0.0 2.3 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|352682047|ref|YP_004892571.1| - 1.1e-12 48.9 0.0 2.3e-12 47.9 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|352682047|ref|YP_004892571.1| - 0.00015 21.7 0.2 0.00025 21.1 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|352682047|ref|YP_004892571.1| - 0.00076 19.8 0.1 0.0016 18.8 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|352682047|ref|YP_004892571.1| - 0.0024 17.9 0.0 0.0072 16.4 0.0 1.8 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|352682047|ref|YP_004892571.1| - 0.0062 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|352682047|ref|YP_004892571.1| - 0.0064 15.5 0.1 0.0087 15.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|352682047|ref|YP_004892571.1| - 0.019 14.1 0.1 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|352682047|ref|YP_004892571.1| - 0.025 14.1 0.1 0.05 13.1 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.19 gi|352682047|ref|YP_004892571.1| - 0.031 13.1 0.3 0.052 12.3 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.9 gi|352682047|ref|YP_004892571.1| - 0.086 11.2 0.1 0.11 10.9 0.1 1.1 1 0 0 1 1 1 0 HI0933-like protein DUF393 PF04134.7 gi|352682047|ref|YP_004892571.1| - 0.16 13.1 0.3 0.34 12.0 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF393 DUF1152 PF06626.7 gi|352682048|ref|YP_004892572.1| - 3.3e-84 282.5 0.1 3.8e-84 282.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) Peptidase_M20 PF01546.23 gi|352682049|ref|YP_004892573.1| - 9e-35 119.8 0.4 1.7e-34 118.9 0.3 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|352682049|ref|YP_004892573.1| - 4.6e-20 71.4 0.0 7.2e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF790 PF05626.6 gi|352682050|ref|YP_004892574.1| - 6.3e-91 304.7 0.0 7.1e-91 304.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Peptidase_C39 PF03412.10 gi|352682050|ref|YP_004892574.1| - 0.066 13.0 0.0 3.9 7.3 0.0 2.4 2 0 0 2 2 2 0 Peptidase C39 family UPF0160 PF03690.8 gi|352682051|ref|YP_004892575.1| - 0.00057 19.4 0.0 0.0042 16.5 0.0 2.0 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0160) SCP2 PF02036.12 gi|352682052|ref|YP_004892576.1| - 0.0015 18.8 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family Peptidase_M20 PF01546.23 gi|352682053|ref|YP_004892577.1| - 3e-37 127.9 0.0 4e-37 127.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|352682053|ref|YP_004892577.1| - 2.8e-18 65.6 0.0 6.3e-18 64.5 0.0 1.6 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|352682053|ref|YP_004892577.1| - 0.086 11.5 0.0 2 7.0 0.0 2.2 2 0 0 2 2 2 0 M42 glutamyl aminopeptidase DUF3311 PF11755.3 gi|352682054|ref|YP_004892578.1| - 5e-17 61.1 9.8 5.9e-17 60.9 6.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2975 PF11188.3 gi|352682054|ref|YP_004892578.1| - 0.018 14.7 0.6 0.021 14.5 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) ABC2_membrane_4 PF12730.2 gi|352682054|ref|YP_004892578.1| - 0.058 12.5 5.8 0.063 12.4 4.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF997 PF06196.7 gi|352682054|ref|YP_004892578.1| - 4.9 6.7 8.7 6.4 6.3 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF997) SSF PF00474.12 gi|352682055|ref|YP_004892579.1| - 9.5e-11 40.9 34.0 3.1e-09 35.9 23.5 2.5 1 1 0 1 1 1 1 Sodium:solute symporter family Class_IIIsignal PF04021.7 gi|352682056|ref|YP_004892580.1| - 5.5e-05 22.7 5.8 5.5e-05 22.7 4.0 2.9 3 0 0 3 3 3 1 Class III signal peptide tRNA_anti-like PF12869.2 gi|352682056|ref|YP_004892580.1| - 0.12 11.9 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 tRNA_anti-like Lactamase_B_2 PF12706.2 gi|352682057|ref|YP_004892581.1| - 3.4e-07 29.9 0.0 4.8e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|352682057|ref|YP_004892581.1| - 9.7e-07 28.6 0.0 1.4e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352682057|ref|YP_004892581.1| - 0.018 14.7 0.2 0.059 13.0 0.0 1.9 2 1 0 2 2 2 0 Metallo-beta-lactamase superfamily MS_channel PF00924.13 gi|352682058|ref|YP_004892582.1| - 1.4e-18 66.9 1.7 2.6e-18 66.1 1.2 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel Aminotran_1_2 PF00155.16 gi|352682059|ref|YP_004892583.1| - 7.3e-58 196.2 0.0 8.3e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|352682059|ref|YP_004892583.1| - 1.5e-09 36.6 0.0 2.3e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|352682059|ref|YP_004892583.1| - 3.2e-07 29.7 0.0 5.4e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|352682059|ref|YP_004892583.1| - 7.6e-06 24.8 0.0 1.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|352682059|ref|YP_004892583.1| - 0.033 13.3 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_MocR PF12897.2 gi|352682059|ref|YP_004892583.1| - 0.12 10.8 0.0 0.21 10.0 0.0 1.4 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase DUF3536 PF12055.3 gi|352682060|ref|YP_004892584.1| - 6e-32 110.9 0.0 8.1e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) Glyco_hydro_57 PF03065.10 gi|352682060|ref|YP_004892584.1| - 3.2e-22 78.9 0.0 1.7e-21 76.5 0.0 2.0 1 1 1 2 2 2 1 Glycosyl hydrolase family 57 DEAD PF00270.24 gi|352682061|ref|YP_004892585.1| - 2.4e-30 105.2 0.1 5.9e-30 103.9 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|352682061|ref|YP_004892585.1| - 1.8e-29 102.7 0.0 3.9e-29 101.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|352682061|ref|YP_004892585.1| - 1.3e-14 53.7 0.2 4.2e-14 52.1 0.1 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|352682061|ref|YP_004892585.1| - 9.4e-08 32.0 0.0 2.5e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|352682061|ref|YP_004892585.1| - 0.0012 18.1 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_22 PF13401.1 gi|352682061|ref|YP_004892585.1| - 0.019 15.1 0.0 0.07 13.2 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|352682061|ref|YP_004892585.1| - 0.04 13.6 0.5 0.4 10.4 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain AAA_11 PF13086.1 gi|352682061|ref|YP_004892585.1| - 0.051 13.1 0.0 0.23 11.0 0.0 2.0 2 1 1 3 3 3 0 AAA domain SNF2_N PF00176.18 gi|352682061|ref|YP_004892585.1| - 0.065 12.0 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain UvrD-helicase PF00580.16 gi|352682061|ref|YP_004892585.1| - 0.073 12.3 0.4 0.18 11.0 0.0 1.8 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain TarH PF02203.10 gi|352682061|ref|YP_004892585.1| - 0.14 11.9 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Tar ligand binding domain homologue SBP_bac_11 PF13531.1 gi|352682063|ref|YP_004892587.1| - 5.9e-31 107.8 0.1 7.3e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|352682064|ref|YP_004892588.1| - 1.4e-22 80.1 14.0 1.4e-22 80.1 9.7 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|352682065|ref|YP_004892589.1| - 5.6e-32 110.9 0.0 8.2e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352682065|ref|YP_004892589.1| - 4.2e-11 43.3 0.1 1.1e-05 25.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352682065|ref|YP_004892589.1| - 4.4e-06 26.0 0.0 0.00041 19.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|352682065|ref|YP_004892589.1| - 7.4e-05 22.4 0.1 0.0013 18.4 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|352682065|ref|YP_004892589.1| - 8.2e-05 22.7 0.6 0.0015 18.7 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|352682065|ref|YP_004892589.1| - 0.00023 21.5 0.0 0.00029 21.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|352682065|ref|YP_004892589.1| - 0.00034 20.0 0.1 0.00066 19.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|352682065|ref|YP_004892589.1| - 0.00053 19.6 0.1 0.001 18.7 0.1 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|352682065|ref|YP_004892589.1| - 0.0014 17.5 0.0 0.0027 16.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|352682065|ref|YP_004892589.1| - 0.0043 17.0 0.1 0.0074 16.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|352682065|ref|YP_004892589.1| - 0.0049 16.4 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|352682065|ref|YP_004892589.1| - 0.0059 16.0 0.1 0.026 13.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|352682065|ref|YP_004892589.1| - 0.0059 15.7 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|352682065|ref|YP_004892589.1| - 0.0064 16.3 0.2 0.037 13.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|352682065|ref|YP_004892589.1| - 0.0075 16.1 0.1 0.064 13.1 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|352682065|ref|YP_004892589.1| - 0.01 15.5 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|352682065|ref|YP_004892589.1| - 0.012 15.0 0.5 0.022 14.2 0.3 1.6 1 1 1 2 2 2 0 AAA-like domain NTPase_1 PF03266.10 gi|352682065|ref|YP_004892589.1| - 0.012 15.2 0.0 0.083 12.5 0.0 2.0 2 0 0 2 2 2 0 NTPase MobB PF03205.9 gi|352682065|ref|YP_004892589.1| - 0.017 14.8 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|352682065|ref|YP_004892589.1| - 0.018 14.4 0.3 0.03 13.7 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|352682065|ref|YP_004892589.1| - 0.02 14.7 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|352682065|ref|YP_004892589.1| - 0.022 14.9 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|352682065|ref|YP_004892589.1| - 0.028 13.8 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|352682065|ref|YP_004892589.1| - 0.043 14.6 0.4 0.099 13.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|352682065|ref|YP_004892589.1| - 0.056 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|352682065|ref|YP_004892589.1| - 0.077 11.4 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|352682065|ref|YP_004892589.1| - 0.098 13.1 0.0 0.21 12.0 0.0 1.6 2 0 0 2 2 1 0 Miro-like protein PIF1 PF05970.9 gi|352682065|ref|YP_004892589.1| - 0.1 11.5 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase DUF258 PF03193.11 gi|352682065|ref|YP_004892589.1| - 0.1 11.7 0.1 0.17 11.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP_bind_1 PF03029.12 gi|352682065|ref|YP_004892589.1| - 0.1 12.0 0.1 0.16 11.4 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.1 gi|352682065|ref|YP_004892589.1| - 0.11 11.5 0.0 0.44 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|352682065|ref|YP_004892589.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|352682065|ref|YP_004892589.1| - 0.14 11.6 0.1 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|352682065|ref|YP_004892589.1| - 0.17 11.8 0.3 0.37 10.7 0.1 1.6 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|352682065|ref|YP_004892589.1| - 0.18 10.6 0.3 0.4 9.4 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain PIG-Y PF15159.1 gi|352682066|ref|YP_004892590.1| - 0.059 13.5 2.1 0.073 13.3 1.5 1.2 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y 7tm_3 PF00003.17 gi|352682066|ref|YP_004892590.1| - 0.17 11.2 5.6 0.17 11.1 3.9 1.0 1 0 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF2663 PF10864.3 gi|352682066|ref|YP_004892590.1| - 0.65 10.2 2.4 0.73 10.0 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2663) DUF2633 PF11119.3 gi|352682066|ref|YP_004892590.1| - 5.9 6.6 8.5 7.3 6.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2633) Phos_pyr_kin PF08543.7 gi|352682067|ref|YP_004892591.1| - 4.6e-94 314.2 0.1 5.8e-94 313.8 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|352682067|ref|YP_004892591.1| - 3.1e-65 218.7 0.0 6.5e-65 217.6 0.0 1.6 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|352682067|ref|YP_004892591.1| - 2.2e-14 53.3 0.1 3.4e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|352682067|ref|YP_004892591.1| - 0.0017 17.6 0.3 0.0025 17.1 0.2 1.3 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|352682067|ref|YP_004892591.1| - 0.053 12.6 0.2 0.14 11.3 0.1 1.7 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family tRNA-synt_1 PF00133.17 gi|352682068|ref|YP_004892592.1| - 1.9e-167 557.8 0.5 2.6e-167 557.4 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|352682068|ref|YP_004892592.1| - 4.5e-31 107.6 0.4 1.3e-30 106.1 0.3 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|352682068|ref|YP_004892592.1| - 1e-24 86.9 0.3 2.1e-09 36.5 0.1 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|352682068|ref|YP_004892592.1| - 3.4e-09 36.2 0.0 7.4e-09 35.1 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|352682068|ref|YP_004892592.1| - 7.7e-07 28.5 0.0 3.8e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|352682068|ref|YP_004892592.1| - 9.6e-06 24.4 0.0 7e-05 21.6 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) PTH2 PF01981.11 gi|352682069|ref|YP_004892593.1| - 2.1e-42 143.4 0.0 2.3e-42 143.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DAO PF01266.19 gi|352682069|ref|YP_004892593.1| - 0.0019 17.1 0.0 0.002 17.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NUDIX PF00293.23 gi|352682070|ref|YP_004892594.1| - 8.1e-13 48.1 0.1 9.9e-13 47.8 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Sdh_cyt PF01127.17 gi|352682071|ref|YP_004892595.1| - 0.00031 20.5 3.4 0.00056 19.7 2.4 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.17 gi|352682072|ref|YP_004892596.1| - 1.9e-09 37.4 5.6 2.7e-09 36.8 3.9 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YwiC PF14256.1 gi|352682072|ref|YP_004892596.1| - 8.1 6.5 10.4 3.7 7.6 1.3 2.1 1 1 0 2 2 2 0 YwiC-like protein Fer2_3 PF13085.1 gi|352682073|ref|YP_004892597.1| - 2.9e-34 117.2 0.1 5e-34 116.4 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|352682073|ref|YP_004892597.1| - 3.1e-12 46.3 4.2 3.9e-12 46.0 1.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352682073|ref|YP_004892597.1| - 2.8e-08 33.9 1.0 2.8e-08 33.9 0.7 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352682073|ref|YP_004892597.1| - 3.9e-08 33.5 4.9 0.00069 19.9 0.1 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682073|ref|YP_004892597.1| - 8.4e-08 31.9 2.5 8.4e-08 31.9 1.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352682073|ref|YP_004892597.1| - 1.2e-07 31.8 1.5 1.2e-07 31.8 1.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352682073|ref|YP_004892597.1| - 1.2e-05 24.6 2.6 1.2e-05 24.6 1.8 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|352682073|ref|YP_004892597.1| - 6.8e-05 23.1 5.6 6.8e-05 23.1 3.9 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.22 gi|352682073|ref|YP_004892597.1| - 7.5e-05 22.4 0.4 7.5e-05 22.4 0.3 2.0 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.1 gi|352682073|ref|YP_004892597.1| - 0.00019 22.0 2.3 0.00019 22.0 1.6 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|352682073|ref|YP_004892597.1| - 0.0002 21.0 1.2 0.0002 21.0 0.8 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|352682073|ref|YP_004892597.1| - 0.0027 17.9 0.9 0.0027 17.9 0.6 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|352682073|ref|YP_004892597.1| - 0.0044 16.8 2.8 0.0044 16.8 2.0 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352682073|ref|YP_004892597.1| - 0.015 15.0 0.7 0.015 15.0 0.5 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|352682073|ref|YP_004892597.1| - 0.16 11.5 2.0 2.3 7.8 0.3 2.3 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FAD_binding_2 PF00890.19 gi|352682074|ref|YP_004892598.1| - 6.6e-110 367.8 0.9 7.9e-110 367.5 0.6 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|352682074|ref|YP_004892598.1| - 1.2e-42 144.8 0.0 2.1e-42 144.0 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|352682074|ref|YP_004892598.1| - 2.5e-09 37.2 0.1 1.3e-07 31.7 0.0 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352682074|ref|YP_004892598.1| - 0.00044 19.2 0.8 0.0014 17.5 0.1 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|352682074|ref|YP_004892598.1| - 0.022 13.6 1.5 0.43 9.3 0.6 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Thi4 PF01946.12 gi|352682074|ref|YP_004892598.1| - 0.11 11.5 2.5 3.1 6.8 0.2 2.9 3 0 0 3 3 3 0 Thi4 family FAD_oxidored PF12831.2 gi|352682074|ref|YP_004892598.1| - 0.14 11.2 1.9 0.62 9.0 0.6 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF364 PF04016.7 gi|352682075|ref|YP_004892599.1| - 0.019 14.3 0.0 0.027 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF364) DUF3254 PF11630.3 gi|352682076|ref|YP_004892600.1| - 0.035 14.0 0.0 0.042 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3254) PCNA_C PF02747.10 gi|352682078|ref|YP_004892602.1| - 3.6e-10 39.8 0.2 5.9e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|352682078|ref|YP_004892602.1| - 8.7e-10 38.1 0.0 1.9e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain YpM PF09144.5 gi|352682078|ref|YP_004892602.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Yersinia pseudotuberculosis mitogen Arch_flagellin PF01917.11 gi|352682079|ref|YP_004892603.1| - 0.096 12.2 1.0 0.22 11.1 0.7 1.6 1 0 0 1 1 1 0 Archaebacterial flagellin CBS PF00571.23 gi|352682080|ref|YP_004892604.1| - 3.3e-33 113.1 4.3 5.5e-18 64.4 0.3 2.1 2 0 0 2 2 2 2 CBS domain DUF746 PF05344.6 gi|352682080|ref|YP_004892604.1| - 0.11 12.0 0.0 0.31 10.5 0.0 1.8 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) VWA_2 PF13519.1 gi|352682081|ref|YP_004892605.1| - 5.7e-06 26.5 0.2 2.3e-05 24.5 0.2 2.1 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|352682081|ref|YP_004892605.1| - 0.0009 18.4 0.4 0.0034 16.5 0.3 1.8 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|352682081|ref|YP_004892605.1| - 0.0072 16.0 0.3 0.025 14.2 0.2 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|352682082|ref|YP_004892606.1| - 1.2e-25 89.8 0.0 3e-25 88.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|352682082|ref|YP_004892606.1| - 2.4e-05 24.5 0.1 0.00011 22.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|352682082|ref|YP_004892606.1| - 0.00015 21.3 0.0 0.00027 20.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|352682082|ref|YP_004892606.1| - 0.00032 19.9 0.0 0.0012 18.1 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|352682082|ref|YP_004892606.1| - 0.01 15.2 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein PPV_E1_C PF00519.12 gi|352682082|ref|YP_004892606.1| - 0.045 12.3 0.0 0.077 11.5 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase AAA_16 PF13191.1 gi|352682082|ref|YP_004892606.1| - 0.062 13.2 0.0 0.14 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain HCV_NS4a PF01006.15 gi|352682082|ref|YP_004892606.1| - 0.14 11.6 0.0 0.39 10.2 0.0 1.7 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a AAA_11 PF13086.1 gi|352682082|ref|YP_004892606.1| - 0.15 11.5 0.0 0.19 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF3782 PF12644.2 gi|352682082|ref|YP_004892606.1| - 0.3 10.9 1.5 2.7 7.8 0.1 2.8 3 1 0 3 3 3 0 Protein of unknown function (DUF3782) HTH_5 PF01022.15 gi|352682084|ref|YP_004892608.1| - 1.5e-13 50.1 0.1 2.1e-13 49.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|352682084|ref|YP_004892608.1| - 3.3e-13 49.2 0.1 4.6e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|352682084|ref|YP_004892608.1| - 1.4e-08 34.3 0.1 1.9e-08 33.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|352682084|ref|YP_004892608.1| - 2.1e-07 30.4 0.4 1e-06 28.2 0.1 2.2 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|352682084|ref|YP_004892608.1| - 3.9e-07 29.3 0.1 5.8e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|352682084|ref|YP_004892608.1| - 4.6e-07 29.4 0.8 6.3e-06 25.8 0.1 2.1 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain HTH_11 PF08279.7 gi|352682084|ref|YP_004892608.1| - 1.8e-05 24.2 0.0 2.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 HTH domain FeoC PF09012.5 gi|352682084|ref|YP_004892608.1| - 0.00014 21.5 0.0 0.00019 21.0 0.0 1.1 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_27 PF13463.1 gi|352682084|ref|YP_004892608.1| - 0.00025 21.3 0.1 0.00047 20.4 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|352682084|ref|YP_004892608.1| - 0.00074 19.0 0.3 0.0034 16.9 0.2 2.0 1 1 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|352682084|ref|YP_004892608.1| - 0.0011 19.0 0.0 0.0014 18.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|352682084|ref|YP_004892608.1| - 0.0013 18.6 0.0 0.0028 17.5 0.0 1.5 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.4 gi|352682084|ref|YP_004892608.1| - 0.0013 18.5 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.7 gi|352682084|ref|YP_004892608.1| - 0.0016 18.2 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC GntR PF00392.16 gi|352682084|ref|YP_004892608.1| - 0.0018 17.6 0.0 0.0032 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|352682084|ref|YP_004892608.1| - 0.0019 17.9 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_DeoR PF08220.7 gi|352682084|ref|YP_004892608.1| - 0.003 17.0 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|352682084|ref|YP_004892608.1| - 0.0036 17.3 0.0 0.0047 16.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|352682084|ref|YP_004892608.1| - 0.0036 16.8 0.0 0.0037 16.8 0.0 1.1 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF4116 PF13475.1 gi|352682084|ref|YP_004892608.1| - 0.0047 16.3 0.0 0.18 11.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4116) MarR PF01047.17 gi|352682084|ref|YP_004892608.1| - 0.0048 16.5 0.0 0.0073 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|352682084|ref|YP_004892608.1| - 0.0048 16.5 0.0 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|352682084|ref|YP_004892608.1| - 0.0055 16.6 0.0 0.013 15.5 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|352682084|ref|YP_004892608.1| - 0.0057 16.7 0.0 0.0062 16.6 0.0 1.2 1 1 0 1 1 1 1 Winged helix-turn helix NUMOD1 PF07453.8 gi|352682084|ref|YP_004892608.1| - 0.0067 16.2 0.1 0.29 11.0 0.0 2.2 2 0 0 2 2 2 1 NUMOD1 domain DUF4423 PF14394.1 gi|352682084|ref|YP_004892608.1| - 0.0075 15.8 0.0 0.0076 15.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Penicillinase_R PF03965.11 gi|352682084|ref|YP_004892608.1| - 0.018 15.1 0.0 0.021 14.8 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.11 gi|352682084|ref|YP_004892608.1| - 0.021 14.3 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain FaeA PF04703.7 gi|352682084|ref|YP_004892608.1| - 0.034 14.2 0.0 0.042 14.0 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HxlR PF01638.12 gi|352682084|ref|YP_004892608.1| - 0.044 13.4 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Sulfolobus_pRN PF05584.6 gi|352682084|ref|YP_004892608.1| - 0.064 13.2 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_30 PF13556.1 gi|352682084|ref|YP_004892608.1| - 0.073 12.6 0.8 0.11 12.0 0.2 1.6 2 0 0 2 2 1 0 PucR C-terminal helix-turn-helix domain TFIIE_alpha PF02002.12 gi|352682084|ref|YP_004892608.1| - 0.076 12.5 0.1 0.092 12.2 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2089 PF09862.4 gi|352682084|ref|YP_004892608.1| - 0.081 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_10 PF04967.7 gi|352682084|ref|YP_004892608.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain tRNA_anti-like PF12869.2 gi|352682085|ref|YP_004892609.1| - 0.14 11.6 1.5 0.23 10.9 1.0 1.3 1 0 0 1 1 1 0 tRNA_anti-like zf-CDGSH PF09360.5 gi|352682087|ref|YP_004892611.1| - 1.1e-12 47.4 0.5 1.5e-12 47.0 0.4 1.2 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type zf-CHCC PF10276.4 gi|352682087|ref|YP_004892611.1| - 0.071 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger domain Coatomer_WDAD PF04053.9 gi|352682088|ref|YP_004892612.1| - 0.064 12.0 0.1 0.079 11.7 0.1 1.1 1 0 0 1 1 1 0 Coatomer WD associated region Claudin_2 PF13903.1 gi|352682088|ref|YP_004892612.1| - 0.33 10.6 5.7 2.2 7.9 0.2 2.2 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF1700 PF08006.6 gi|352682088|ref|YP_004892612.1| - 0.62 9.3 4.6 1.8 7.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) TPPK_C PF12555.3 gi|352682088|ref|YP_004892612.1| - 2.3 8.0 7.3 2.6 7.8 0.9 2.7 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal HhH-GPD PF00730.20 gi|352682089|ref|YP_004892613.1| - 3.3e-22 78.7 0.0 4.3e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|352682089|ref|YP_004892613.1| - 0.00011 21.6 0.2 0.00036 20.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|352682089|ref|YP_004892613.1| - 0.0008 19.4 6.1 0.0014 18.7 4.2 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|352682089|ref|YP_004892613.1| - 0.021 14.9 0.1 0.1 12.7 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|352682089|ref|YP_004892613.1| - 0.044 13.8 0.0 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Mrr_N PF14338.1 gi|352682090|ref|YP_004892614.1| - 0.087 12.9 0.0 17 5.5 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_AsnC-type PF13404.1 gi|352682090|ref|YP_004892614.1| - 0.5 9.9 3.5 0.39 10.2 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Arch_ATPase PF01637.13 gi|352682091|ref|YP_004892615.1| - 0.0057 16.3 0.0 0.0085 15.8 0.0 1.3 1 1 0 1 1 1 1 Archaeal ATPase Herpes_Helicase PF02689.9 gi|352682091|ref|YP_004892615.1| - 0.018 12.7 0.0 0.024 12.3 0.0 1.1 1 0 0 1 1 1 0 Helicase AAA_22 PF13401.1 gi|352682091|ref|YP_004892615.1| - 0.091 12.9 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|352682091|ref|YP_004892615.1| - 0.11 12.4 0.1 0.28 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|352682091|ref|YP_004892615.1| - 0.15 12.9 0.0 0.26 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M32 PF02074.10 gi|352682092|ref|YP_004892616.1| - 9.5e-184 611.6 0.3 1.1e-183 611.4 0.2 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase MarR_2 PF12802.2 gi|352682093|ref|YP_004892617.1| - 1.1e-07 31.4 0.9 2e-07 30.5 0.6 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|352682093|ref|YP_004892617.1| - 8.6e-06 25.3 0.2 4.9e-05 22.9 0.2 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|352682093|ref|YP_004892617.1| - 2e-05 23.8 1.4 4.4e-05 22.7 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|352682093|ref|YP_004892617.1| - 5.2e-05 22.9 1.0 0.00023 20.8 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|352682093|ref|YP_004892617.1| - 0.00015 21.4 0.1 0.00099 18.7 0.0 2.3 2 1 0 2 2 2 1 AsnC family HTH_Crp_2 PF13545.1 gi|352682093|ref|YP_004892617.1| - 0.00044 19.9 0.2 0.00079 19.1 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|352682093|ref|YP_004892617.1| - 0.0011 19.2 3.0 0.0019 18.4 0.9 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|352682093|ref|YP_004892617.1| - 0.0024 17.4 0.6 0.012 15.1 0.0 2.3 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|352682093|ref|YP_004892617.1| - 0.0044 16.7 0.1 0.072 12.8 0.0 2.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|352682093|ref|YP_004892617.1| - 0.0054 16.2 1.0 0.64 9.6 0.0 2.6 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.1 gi|352682093|ref|YP_004892617.1| - 0.0056 16.2 0.0 0.14 11.8 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|352682093|ref|YP_004892617.1| - 0.019 14.4 3.6 0.15 11.6 2.5 2.2 1 1 0 1 1 1 0 LexA DNA binding domain MarR PF01047.17 gi|352682093|ref|YP_004892617.1| - 0.02 14.5 0.1 0.039 13.6 0.1 1.5 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.7 gi|352682093|ref|YP_004892617.1| - 0.022 14.2 0.0 0.11 12.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|352682093|ref|YP_004892617.1| - 0.027 14.0 2.4 0.097 12.2 1.1 2.3 2 1 0 2 2 2 0 IclR helix-turn-helix domain RP-C PF03428.8 gi|352682093|ref|YP_004892617.1| - 0.041 13.3 0.1 0.076 12.4 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_8 PF02954.14 gi|352682093|ref|YP_004892617.1| - 0.048 13.2 0.1 0.048 13.2 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family Rrf2 PF02082.15 gi|352682093|ref|YP_004892617.1| - 0.12 12.5 0.1 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator Thg1 PF04446.7 gi|352682094|ref|YP_004892618.1| - 2.5e-16 59.5 0.0 3.7e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thiolase_N PF00108.18 gi|352682095|ref|YP_004892619.1| - 1.2e-80 270.3 0.0 1.5e-80 270.0 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|352682095|ref|YP_004892619.1| - 2.2e-37 127.1 0.1 2e-36 124.1 0.0 2.3 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|352682095|ref|YP_004892619.1| - 3.3e-06 26.7 0.7 3.3e-06 26.7 0.5 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain MAF_flag10 PF01973.13 gi|352682101|ref|YP_004892625.1| - 4.6e-14 52.2 0.0 6.9e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Pepsin-I3 PF06394.8 gi|352682103|ref|YP_004892627.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Pepsin inhibitor-3-like repeated domain T2SE PF00437.15 gi|352682104|ref|YP_004892628.1| - 9.4e-36 123.1 0.0 1.4e-35 122.5 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|352682104|ref|YP_004892628.1| - 5.5e-05 22.6 0.0 0.00012 21.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|352682104|ref|YP_004892628.1| - 0.0005 19.5 0.1 0.0011 18.5 0.1 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|352682104|ref|YP_004892628.1| - 0.0013 18.3 0.1 0.028 14.1 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain ABC_tran PF00005.22 gi|352682104|ref|YP_004892628.1| - 0.0019 18.4 0.0 0.005 17.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_28 PF13521.1 gi|352682104|ref|YP_004892628.1| - 0.0031 17.5 0.2 0.019 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|352682104|ref|YP_004892628.1| - 0.0038 17.5 0.0 0.007 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|352682104|ref|YP_004892628.1| - 0.0041 17.0 0.0 0.0077 16.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|352682104|ref|YP_004892628.1| - 0.0079 15.6 0.2 0.024 14.1 0.1 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|352682104|ref|YP_004892628.1| - 0.0084 16.2 0.0 0.021 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|352682104|ref|YP_004892628.1| - 0.0084 15.5 0.1 0.016 14.6 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_21 PF13304.1 gi|352682104|ref|YP_004892628.1| - 0.0084 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|352682104|ref|YP_004892628.1| - 0.013 15.9 0.0 0.051 14.0 0.0 2.0 2 0 0 2 2 1 0 Miro-like protein Pox_A32 PF04665.7 gi|352682104|ref|YP_004892628.1| - 0.015 14.5 0.1 0.027 13.7 0.1 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein Mg_chelatase PF01078.16 gi|352682104|ref|YP_004892628.1| - 0.02 14.0 0.0 0.032 13.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|352682104|ref|YP_004892628.1| - 0.026 14.5 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|352682104|ref|YP_004892628.1| - 0.036 13.7 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|352682104|ref|YP_004892628.1| - 0.041 14.1 0.0 0.12 12.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|352682104|ref|YP_004892628.1| - 0.046 12.3 0.1 0.07 11.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Septin PF00735.13 gi|352682104|ref|YP_004892628.1| - 0.06 12.3 0.0 0.097 11.6 0.0 1.3 1 0 0 1 1 1 0 Septin NACHT PF05729.7 gi|352682104|ref|YP_004892628.1| - 0.067 12.8 0.1 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|352682104|ref|YP_004892628.1| - 0.079 12.4 0.1 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|352682104|ref|YP_004892628.1| - 0.085 13.6 0.0 0.3 11.9 0.0 2.0 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|352682104|ref|YP_004892628.1| - 0.13 11.6 0.1 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Dynamin_N PF00350.18 gi|352682104|ref|YP_004892628.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Dynamin family DUF735 PF05246.6 gi|352682105|ref|YP_004892629.1| - 0.047 13.4 0.3 0.054 13.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF735) UPF0126 PF03458.8 gi|352682106|ref|YP_004892630.1| - 0.0019 17.8 2.2 0.0025 17.3 1.2 1.5 1 1 0 1 1 1 1 UPF0126 domain DUF2273 PF10031.4 gi|352682106|ref|YP_004892630.1| - 0.87 9.2 0.1 0.87 9.2 0.0 2.6 2 1 0 2 2 2 0 Small integral membrane protein (DUF2273) Acid_phosphat_B PF03767.9 gi|352682107|ref|YP_004892631.1| - 1.3e-09 37.7 0.0 1.4e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) HAD_2 PF13419.1 gi|352682107|ref|YP_004892631.1| - 0.0016 18.7 0.1 0.016 15.4 0.0 2.2 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|352682107|ref|YP_004892631.1| - 0.0018 17.8 0.0 0.0039 16.8 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|352682107|ref|YP_004892631.1| - 0.0094 16.3 0.0 0.085 13.2 0.0 1.9 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|352682107|ref|YP_004892631.1| - 0.04 13.7 0.0 0.38 10.6 0.0 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|352682107|ref|YP_004892631.1| - 0.13 12.4 0.0 0.62 10.1 0.0 1.9 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2608 PF11019.3 gi|352682107|ref|YP_004892631.1| - 0.13 11.1 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) HTH_32 PF13565.1 gi|352682108|ref|YP_004892632.1| - 0.11 13.2 0.1 0.17 12.6 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain RHH_1 PF01402.16 gi|352682108|ref|YP_004892632.1| - 0.15 12.0 2.1 0.21 11.5 0.2 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Epimerase PF01370.16 gi|352682109|ref|YP_004892633.1| - 4.7e-21 75.3 0.0 6.4e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|352682109|ref|YP_004892633.1| - 8.4e-12 44.5 0.0 1.3e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|352682109|ref|YP_004892633.1| - 1.1e-11 45.0 0.0 1.6e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|352682109|ref|YP_004892633.1| - 5.7e-09 35.2 0.0 2.2e-07 30.0 0.0 2.2 1 1 1 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|352682109|ref|YP_004892633.1| - 8.6e-08 31.2 0.0 2.7e-07 29.5 0.0 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_2 PF03446.10 gi|352682109|ref|YP_004892633.1| - 0.00053 19.8 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short PF00106.20 gi|352682109|ref|YP_004892633.1| - 0.0024 17.8 0.3 0.0063 16.4 0.1 1.7 1 1 1 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|352682109|ref|YP_004892633.1| - 0.0064 15.7 0.0 0.084 12.1 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|352682109|ref|YP_004892633.1| - 0.0065 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 KR domain Pyr_redox PF00070.22 gi|352682109|ref|YP_004892633.1| - 0.017 15.5 0.1 0.034 14.5 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352682109|ref|YP_004892633.1| - 0.02 13.7 0.3 0.037 12.9 0.2 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Glyco_transf_4 PF13439.1 gi|352682109|ref|YP_004892633.1| - 0.025 14.2 0.3 0.053 13.2 0.2 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|352682109|ref|YP_004892633.1| - 0.029 14.5 1.1 0.17 11.9 0.2 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Shikimate_DH PF01488.15 gi|352682109|ref|YP_004892633.1| - 0.068 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|352682109|ref|YP_004892633.1| - 0.078 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ABC_tran PF00005.22 gi|352682110|ref|YP_004892634.1| - 9.4e-20 71.3 0.0 1.5e-19 70.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352682110|ref|YP_004892634.1| - 5.2e-11 43.0 0.1 1.5e-05 25.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|352682110|ref|YP_004892634.1| - 6.3e-09 36.4 0.1 1.8e-08 34.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|352682110|ref|YP_004892634.1| - 4.9e-07 29.1 0.0 0.00061 19.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|352682110|ref|YP_004892634.1| - 4.1e-05 22.8 0.0 0.0047 16.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|352682110|ref|YP_004892634.1| - 0.00011 21.6 0.5 0.00034 20.0 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|352682110|ref|YP_004892634.1| - 0.00027 20.5 0.0 0.042 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_13 PF13166.1 gi|352682110|ref|YP_004892634.1| - 0.00036 19.1 0.0 0.00043 18.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352682110|ref|YP_004892634.1| - 0.0028 17.6 0.1 0.0056 16.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|352682110|ref|YP_004892634.1| - 0.0042 17.8 0.2 0.01 16.6 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|352682110|ref|YP_004892634.1| - 0.012 15.5 0.0 0.13 12.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|352682110|ref|YP_004892634.1| - 0.021 14.4 0.0 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|352682110|ref|YP_004892634.1| - 0.039 14.1 0.0 0.086 12.9 0.0 1.6 2 1 0 2 2 2 0 AAA domain MukB PF04310.7 gi|352682110|ref|YP_004892634.1| - 0.039 13.2 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal MutS_V PF00488.16 gi|352682110|ref|YP_004892634.1| - 0.047 13.0 0.0 0.073 12.4 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_19 PF13245.1 gi|352682110|ref|YP_004892634.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain RNA_helicase PF00910.17 gi|352682110|ref|YP_004892634.1| - 0.098 12.8 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|352682110|ref|YP_004892634.1| - 0.14 11.8 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|352682110|ref|YP_004892634.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SBP_bac_11 PF13531.1 gi|352682111|ref|YP_004892635.1| - 2.1e-21 76.6 0.1 2.6e-21 76.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein UPF0066 PF01980.11 gi|352682112|ref|YP_004892636.1| - 1e-36 125.5 0.0 1.2e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 BPD_transp_1 PF00528.17 gi|352682113|ref|YP_004892637.1| - 1.6e-07 31.0 15.3 1.6e-07 31.0 10.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrmB PF01978.14 gi|352682114|ref|YP_004892638.1| - 2.5e-06 27.0 0.0 4.5e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|352682114|ref|YP_004892638.1| - 0.00039 20.4 0.0 0.00062 19.8 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.1 gi|352682114|ref|YP_004892638.1| - 0.03 13.6 0.1 0.05 12.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|352682114|ref|YP_004892638.1| - 0.035 13.7 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|352682114|ref|YP_004892638.1| - 0.06 12.9 0.1 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|352682114|ref|YP_004892638.1| - 0.086 12.8 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein B-block_TFIIIC PF04182.7 gi|352682114|ref|YP_004892638.1| - 0.093 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF977 PF06163.6 gi|352682114|ref|YP_004892638.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) MarR PF01047.17 gi|352682114|ref|YP_004892638.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 MarR family zf-CDGSH PF09360.5 gi|352682114|ref|YP_004892638.1| - 0.21 11.4 0.0 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 Iron-binding zinc finger CDGSH type Sod_Fe_C PF02777.13 gi|352682115|ref|YP_004892639.1| - 8.1e-18 64.2 3.2 8.6e-18 64.1 2.2 1.0 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Arch_ATPase PF01637.13 gi|352682115|ref|YP_004892639.1| - 0.039 13.6 0.0 0.042 13.5 0.0 1.0 1 0 0 1 1 1 0 Archaeal ATPase Sod_Fe_N PF00081.17 gi|352682116|ref|YP_004892640.1| - 4.7e-29 100.4 0.0 6.4e-29 100.0 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.13 gi|352682116|ref|YP_004892640.1| - 1.5e-10 40.8 0.0 2.6e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain zf-FCS PF06467.9 gi|352682117|ref|YP_004892641.1| - 0.12 12.0 2.2 0.49 10.0 0.1 2.3 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif PPDK_N PF01326.14 gi|352682118|ref|YP_004892642.1| - 2.2e-104 349.0 1.6 3.6e-104 348.3 1.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|352682118|ref|YP_004892642.1| - 3.4e-75 252.6 0.0 5.4e-75 251.9 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|352682118|ref|YP_004892642.1| - 2e-28 97.7 0.1 5.1e-28 96.4 0.1 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.16 gi|352682118|ref|YP_004892642.1| - 0.012 15.7 0.0 1.1 9.4 0.0 3.0 2 1 0 2 2 2 0 Radical SAM superfamily Peptidase_M22 PF00814.20 gi|352682119|ref|YP_004892643.1| - 3.9e-72 242.9 0.1 4.7e-72 242.7 0.1 1.1 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.14 gi|352682120|ref|YP_004892644.1| - 2.7e-07 30.2 0.2 3.5e-07 29.9 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.6 gi|352682120|ref|YP_004892644.1| - 4.7e-05 22.9 0.0 5.3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|352682120|ref|YP_004892644.1| - 0.0002 21.0 1.2 0.24 11.2 0.2 2.2 2 0 0 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|352682120|ref|YP_004892644.1| - 0.00058 19.7 2.9 0.061 13.2 0.1 2.1 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS1595 PF12760.2 gi|352682120|ref|YP_004892644.1| - 0.00059 19.5 2.8 0.0007 19.3 1.9 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|352682120|ref|YP_004892644.1| - 0.0022 17.7 0.4 0.0032 17.2 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|352682120|ref|YP_004892644.1| - 0.0023 17.0 2.5 0.033 13.3 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|352682120|ref|YP_004892644.1| - 0.003 17.0 6.3 0.0052 16.2 0.4 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|352682120|ref|YP_004892644.1| - 0.0054 16.3 0.7 0.011 15.3 0.5 1.4 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit ADK_lid PF05191.9 gi|352682120|ref|YP_004892644.1| - 0.016 14.8 4.3 0.23 11.1 0.2 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.1 gi|352682120|ref|YP_004892644.1| - 0.018 14.6 5.0 0.082 12.6 3.5 1.9 1 1 0 1 1 1 0 Nudix N-terminal IBR PF01485.16 gi|352682120|ref|YP_004892644.1| - 0.019 14.8 0.1 0.021 14.6 0.1 1.1 1 0 0 1 1 1 0 IBR domain zf-ISL3 PF14690.1 gi|352682120|ref|YP_004892644.1| - 0.024 14.6 6.7 0.056 13.4 0.4 2.2 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|352682120|ref|YP_004892644.1| - 0.036 13.5 4.2 0.32 10.5 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|352682120|ref|YP_004892644.1| - 0.038 13.4 1.1 1.2 8.7 0.1 2.5 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF35_N PF12172.3 gi|352682120|ref|YP_004892644.1| - 0.054 13.4 1.9 4 7.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|352682120|ref|YP_004892644.1| - 0.061 12.6 0.7 0.69 9.2 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|352682120|ref|YP_004892644.1| - 0.079 12.4 1.5 2.6 7.5 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-LITAF-like PF10601.4 gi|352682120|ref|YP_004892644.1| - 0.081 12.8 0.3 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain C1_1 PF00130.17 gi|352682120|ref|YP_004892644.1| - 0.096 12.4 1.1 0.12 12.1 0.8 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|352682120|ref|YP_004892644.1| - 0.11 12.7 4.0 0.23 11.7 2.8 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Rpr2 PF04032.11 gi|352682120|ref|YP_004892644.1| - 0.14 12.0 1.9 1.1 9.1 1.3 1.9 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain YhfH PF14149.1 gi|352682120|ref|YP_004892644.1| - 0.19 11.5 3.5 7.2 6.4 0.4 2.4 1 1 1 2 2 2 0 YhfH-like protein DUF2082 PF09855.4 gi|352682120|ref|YP_004892644.1| - 0.27 11.1 1.3 12 5.8 0.2 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C2H2_3 PF13878.1 gi|352682120|ref|YP_004892644.1| - 0.46 10.0 5.8 6 6.5 1.0 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO NOB1_Zn_bind PF08772.6 gi|352682120|ref|YP_004892644.1| - 0.87 9.4 6.5 0.23 11.3 0.5 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_S24e PF01282.14 gi|352682121|ref|YP_004892645.1| - 1.6e-21 75.8 0.3 2.9e-21 75.0 0.2 1.6 1 1 0 1 1 1 1 Ribosomal protein S24e PsiE PF06146.7 gi|352682122|ref|YP_004892646.1| - 2.6e-13 50.0 6.2 2.6e-13 50.0 4.3 1.6 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF373 PF04123.8 gi|352682122|ref|YP_004892646.1| - 0.22 10.5 8.4 0.27 10.2 5.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Yip1 PF04893.12 gi|352682122|ref|YP_004892646.1| - 0.56 9.6 7.0 0.16 11.4 2.7 1.6 1 1 1 2 2 2 0 Yip1 domain Multi_Drug_Res PF00893.14 gi|352682122|ref|YP_004892646.1| - 0.66 10.4 9.9 1 9.8 1.5 2.6 1 1 1 2 2 2 0 Small Multidrug Resistance protein HILPDA PF15220.1 gi|352682122|ref|YP_004892646.1| - 1.4 8.9 3.7 0.9 9.5 0.4 2.0 1 1 1 2 2 2 0 Hypoxia-inducible lipid droplet-associated Methyltransf_11 PF08241.7 gi|352682123|ref|YP_004892647.1| - 2.6e-08 34.2 0.0 4e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352682123|ref|YP_004892647.1| - 0.058 13.9 0.0 0.12 12.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Abi PF02517.11 gi|352682124|ref|YP_004892648.1| - 2.1e-11 43.7 6.7 2.1e-11 43.7 4.7 2.3 1 1 1 2 2 2 1 CAAX protease self-immunity DUF1240 PF06836.7 gi|352682124|ref|YP_004892648.1| - 0.047 13.9 7.6 1.7 8.8 1.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1240) DUF1070 PF06376.7 gi|352682124|ref|YP_004892648.1| - 0.16 11.8 3.9 0.2 11.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1070) Colicin_V PF02674.11 gi|352682124|ref|YP_004892648.1| - 0.76 9.6 17.4 0.033 14.0 4.5 2.1 2 0 0 2 2 2 0 Colicin V production protein Fe_dep_repress PF01325.14 gi|352682125|ref|YP_004892649.1| - 1.3e-18 66.7 0.1 1.3e-18 66.7 0.1 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|352682125|ref|YP_004892649.1| - 1.2e-11 44.1 0.5 1.7e-10 40.4 0.7 2.1 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|352682125|ref|YP_004892649.1| - 4.9e-11 42.1 0.1 1.4e-10 40.6 0.1 1.7 1 1 1 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|352682125|ref|YP_004892649.1| - 5.2e-08 32.3 0.2 2.9e-06 26.7 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|352682125|ref|YP_004892649.1| - 7e-08 32.6 0.0 1.5e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|352682125|ref|YP_004892649.1| - 9e-08 31.7 0.0 2.1e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|352682125|ref|YP_004892649.1| - 2.7e-07 30.2 0.1 7e-07 28.9 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|352682125|ref|YP_004892649.1| - 7.9e-07 28.3 1.4 1.2e-06 27.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|352682125|ref|YP_004892649.1| - 2.5e-05 24.1 0.1 0.00048 20.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|352682125|ref|YP_004892649.1| - 2.6e-05 23.7 0.1 6.4e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|352682125|ref|YP_004892649.1| - 2.8e-05 23.7 0.1 7.5e-05 22.3 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|352682125|ref|YP_004892649.1| - 0.0001 22.3 0.3 0.0004 20.4 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator DUF977 PF06163.6 gi|352682125|ref|YP_004892649.1| - 0.00019 21.2 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_20 PF12840.2 gi|352682125|ref|YP_004892649.1| - 0.00037 20.2 0.0 0.001 18.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|352682125|ref|YP_004892649.1| - 0.00046 19.5 0.1 0.0016 17.8 0.1 1.9 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|352682125|ref|YP_004892649.1| - 0.00048 19.6 0.1 0.0011 18.4 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|352682125|ref|YP_004892649.1| - 0.00065 19.2 0.0 0.0018 17.8 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.1 gi|352682125|ref|YP_004892649.1| - 0.00073 19.3 0.0 0.0026 17.5 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.1 gi|352682125|ref|YP_004892649.1| - 0.0015 18.6 0.1 0.0021 18.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn helix Topoisom_bac PF01131.15 gi|352682125|ref|YP_004892649.1| - 0.0021 16.9 0.2 0.005 15.7 0.1 1.4 1 1 1 2 2 2 1 DNA topoisomerase HemN_C PF06969.11 gi|352682125|ref|YP_004892649.1| - 0.0024 17.9 0.1 0.0069 16.4 0.0 1.9 2 1 0 2 2 2 1 HemN C-terminal domain FeoC PF09012.5 gi|352682125|ref|YP_004892649.1| - 0.0027 17.3 0.2 0.012 15.2 0.0 2.0 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_12 PF08461.5 gi|352682125|ref|YP_004892649.1| - 0.0045 16.6 0.6 0.01 15.5 0.1 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|352682125|ref|YP_004892649.1| - 0.0047 16.4 0.1 0.011 15.1 0.0 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|352682125|ref|YP_004892649.1| - 0.0053 16.3 1.1 0.012 15.2 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|352682125|ref|YP_004892649.1| - 0.01 15.3 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_17 PF12728.2 gi|352682125|ref|YP_004892649.1| - 0.017 15.3 0.0 0.039 14.2 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2042 PF09743.4 gi|352682125|ref|YP_004892649.1| - 0.018 14.3 0.0 0.026 13.8 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) HTH_1 PF00126.22 gi|352682125|ref|YP_004892649.1| - 0.018 14.7 0.1 0.067 12.9 0.1 2.1 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family EAP30 PF04157.11 gi|352682125|ref|YP_004892649.1| - 0.024 13.7 0.0 0.042 13.0 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Mrr_N PF14338.1 gi|352682125|ref|YP_004892649.1| - 0.045 13.8 0.1 0.88 9.7 0.0 2.6 2 1 1 3 3 3 0 Mrr N-terminal domain Ftsk_gamma PF09397.5 gi|352682125|ref|YP_004892649.1| - 0.049 13.3 0.2 0.097 12.3 0.0 1.5 2 0 0 2 2 1 0 Ftsk gamma domain B-block_TFIIIC PF04182.7 gi|352682125|ref|YP_004892649.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF4423 PF14394.1 gi|352682125|ref|YP_004892649.1| - 0.067 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Dimerisation PF08100.6 gi|352682125|ref|YP_004892649.1| - 0.073 12.9 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Dimerisation domain HTH_DeoR PF08220.7 gi|352682125|ref|YP_004892649.1| - 0.076 12.5 0.1 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain SWIRM PF04433.12 gi|352682125|ref|YP_004892649.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 SWIRM domain ANT PF03374.9 gi|352682125|ref|YP_004892649.1| - 0.13 12.3 0.0 0.27 11.2 0.0 1.5 1 1 1 2 2 2 0 Phage antirepressor protein KilAC domain Nramp PF01566.13 gi|352682126|ref|YP_004892650.1| - 7.7e-74 248.6 22.8 1e-73 248.2 15.8 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein ATP-grasp_2 PF08442.5 gi|352682127|ref|YP_004892651.1| - 2.8e-63 212.9 1.9 2.8e-63 212.9 1.3 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|352682127|ref|YP_004892651.1| - 2.1e-16 59.9 1.7 7.6e-16 58.0 0.2 2.3 3 0 0 3 3 3 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|352682127|ref|YP_004892651.1| - 3.5e-14 52.5 1.7 4.3e-13 48.9 1.2 2.3 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|352682127|ref|YP_004892651.1| - 2.4e-08 33.5 0.7 5.5e-08 32.3 0.2 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.14 gi|352682127|ref|YP_004892651.1| - 1.3e-05 24.8 1.3 2.8e-05 23.7 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|352682127|ref|YP_004892651.1| - 7.3e-05 22.5 0.0 0.00016 21.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|352682127|ref|YP_004892651.1| - 8.2e-05 22.0 0.1 0.00016 21.0 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|352682127|ref|YP_004892651.1| - 0.00013 21.5 0.1 0.00021 20.8 0.1 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Ribosomal_L22 PF00237.14 gi|352682127|ref|YP_004892651.1| - 0.016 15.1 0.0 0.044 13.7 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e Linocin_M18 PF04454.7 gi|352682127|ref|YP_004892651.1| - 0.064 12.1 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 Encapsulating protein for peroxidase CoA_binding PF02629.14 gi|352682128|ref|YP_004892652.1| - 2.7e-30 104.7 8.3 1e-29 102.8 2.5 2.5 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.14 gi|352682128|ref|YP_004892652.1| - 3.7e-12 46.1 0.3 9.3e-12 44.8 0.1 1.7 2 0 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|352682128|ref|YP_004892652.1| - 2.4e-11 43.3 0.1 1.3e-10 41.0 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|352682128|ref|YP_004892652.1| - 1.7e-09 37.8 0.9 6.9e-09 35.8 0.2 2.1 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|352682128|ref|YP_004892652.1| - 0.00041 20.8 0.7 0.002 18.6 0.2 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Peripla_BP_4 PF13407.1 gi|352682128|ref|YP_004892652.1| - 0.034 13.5 3.5 0.99 8.6 1.1 3.0 1 1 0 2 2 2 0 Periplasmic binding protein domain IlvN PF07991.7 gi|352682128|ref|YP_004892652.1| - 0.071 12.4 0.7 0.12 11.7 0.1 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain SHOCT PF09851.4 gi|352682128|ref|YP_004892652.1| - 0.15 11.5 0.2 0.31 10.5 0.2 1.5 1 0 0 1 1 1 0 Short C-terminal domain zf-B_box PF00643.19 gi|352682129|ref|YP_004892653.1| - 0.00048 19.9 30.2 0.025 14.4 1.6 4.0 3 1 1 4 4 4 3 B-box zinc finger zf-ribbon_3 PF13248.1 gi|352682129|ref|YP_004892653.1| - 0.0017 17.5 2.7 0.0017 17.5 1.9 4.0 3 2 2 5 5 5 1 zinc-ribbon domain TerY-C PF15616.1 gi|352682129|ref|YP_004892653.1| - 0.0043 16.9 19.9 0.1 12.5 4.5 2.0 1 1 1 2 2 2 2 TerY-C metal binding domain zf-C2HC5 PF06221.8 gi|352682129|ref|YP_004892653.1| - 0.0067 16.1 24.5 0.24 11.1 4.2 2.7 1 1 1 2 2 2 2 Putative zinc finger motif, C2HC5-type zf-HIT PF04438.11 gi|352682129|ref|YP_004892653.1| - 0.0093 15.5 6.3 0.0093 15.5 4.4 4.0 1 1 0 2 2 2 1 HIT zinc finger DUF3795 PF12675.2 gi|352682129|ref|YP_004892653.1| - 0.036 14.2 10.7 0.036 14.2 7.4 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3795) Mu-like_Com PF10122.4 gi|352682129|ref|YP_004892653.1| - 0.037 13.0 1.2 0.037 13.0 0.8 3.0 1 1 2 3 3 3 0 Mu-like prophage protein Com zf-C3HC4_3 PF13920.1 gi|352682129|ref|YP_004892653.1| - 0.13 11.9 26.2 0.21 11.2 7.3 3.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Cys_rich_CPCC PF14206.1 gi|352682129|ref|YP_004892653.1| - 0.18 11.4 0.2 0.18 11.4 0.2 3.3 1 1 2 3 3 3 0 Cysteine-rich CPCC FYVE PF01363.16 gi|352682129|ref|YP_004892653.1| - 0.23 11.3 32.2 5.7 6.9 12.9 4.2 1 1 1 2 2 2 0 FYVE zinc finger zf-C3HC4_2 PF13923.1 gi|352682129|ref|YP_004892653.1| - 0.64 10.0 25.7 0.15 12.1 6.7 3.6 1 1 2 3 3 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|352682129|ref|YP_004892653.1| - 0.93 9.3 26.0 0.095 12.5 5.7 3.5 1 1 1 2 2 2 0 Double zinc ribbon IBR PF01485.16 gi|352682129|ref|YP_004892653.1| - 8.1 6.4 25.8 5.5 6.9 5.7 3.7 2 1 2 4 4 4 0 IBR domain Ribosomal_L37ae PF01780.14 gi|352682129|ref|YP_004892653.1| - 9.4 6.1 13.9 0.84 9.5 5.7 1.8 1 1 1 2 2 2 0 Ribosomal L37ae protein family Aminotran_1_2 PF00155.16 gi|352682130|ref|YP_004892654.1| - 2.1e-42 145.4 0.0 2.3e-42 145.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|352682130|ref|YP_004892654.1| - 2.9e-10 39.2 0.0 9.5e-10 37.5 0.0 1.8 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Prim-Pol PF09250.6 gi|352682130|ref|YP_004892654.1| - 0.0073 16.2 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal PALP PF00291.20 gi|352682131|ref|YP_004892655.1| - 1.4e-83 280.6 2.4 1.9e-83 280.2 1.6 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|352682131|ref|YP_004892655.1| - 2.5e-10 39.6 0.0 1.3e-09 37.3 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|352682131|ref|YP_004892655.1| - 0.0028 17.3 0.0 0.0089 15.7 0.0 1.9 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|352682131|ref|YP_004892655.1| - 0.03 13.8 0.4 6.4 6.3 0.0 2.7 2 0 0 2 2 2 0 ACT domain ACT_4 PF13291.1 gi|352682131|ref|YP_004892655.1| - 0.04 14.2 0.0 0.091 13.1 0.0 1.6 1 0 0 1 1 1 0 ACT domain tRNA_SAD PF07973.9 gi|352682132|ref|YP_004892656.1| - 7.5e-12 44.9 0.2 1.5e-11 43.9 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|352682132|ref|YP_004892656.1| - 2.3e-09 36.0 0.3 3.3e-09 35.5 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) BMC PF00936.14 gi|352682132|ref|YP_004892656.1| - 0.19 11.4 0.7 0.41 10.3 0.1 1.8 2 0 0 2 2 2 0 BMC domain DAO PF01266.19 gi|352682133|ref|YP_004892657.1| - 1.9e-58 198.0 0.3 2.4e-58 197.7 0.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|352682133|ref|YP_004892657.1| - 4e-05 23.5 0.5 8.9e-05 22.4 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|352682133|ref|YP_004892657.1| - 4.9e-05 23.3 0.0 0.033 14.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|352682133|ref|YP_004892657.1| - 0.0002 21.4 0.0 0.055 13.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352682133|ref|YP_004892657.1| - 0.00028 20.6 0.2 0.091 12.5 0.1 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|352682133|ref|YP_004892657.1| - 0.007 15.3 0.2 0.011 14.6 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|352682133|ref|YP_004892657.1| - 0.011 14.8 0.1 0.023 13.7 0.1 1.6 2 0 0 2 2 2 0 Thi4 family FAD_binding_2 PF00890.19 gi|352682133|ref|YP_004892657.1| - 0.055 12.2 0.2 1 8.1 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain Mqo PF06039.10 gi|352682133|ref|YP_004892657.1| - 0.09 10.9 0.0 0.12 10.4 0.0 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) Pyr_redox PF00070.22 gi|352682133|ref|YP_004892657.1| - 0.097 13.0 0.2 0.27 11.6 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ldh_1_N PF00056.18 gi|352682133|ref|YP_004892657.1| - 0.12 12.1 0.3 0.22 11.3 0.2 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain FUR PF01475.14 gi|352682134|ref|YP_004892658.1| - 5.4e-22 77.9 0.0 6.6e-22 77.6 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.9 gi|352682134|ref|YP_004892658.1| - 0.00035 20.2 0.0 0.001 18.7 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|352682134|ref|YP_004892658.1| - 0.00056 19.9 0.0 0.00073 19.6 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|352682134|ref|YP_004892658.1| - 0.003 17.2 0.1 0.006 16.2 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_Tc3_2 PF01498.13 gi|352682134|ref|YP_004892658.1| - 0.0085 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Transposase HxlR PF01638.12 gi|352682134|ref|YP_004892658.1| - 0.014 14.9 0.0 0.034 13.7 0.0 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|352682134|ref|YP_004892658.1| - 0.018 14.6 0.0 0.065 12.9 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|352682134|ref|YP_004892658.1| - 0.025 14.1 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.1 gi|352682134|ref|YP_004892658.1| - 0.031 13.6 0.2 0.066 12.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|352682134|ref|YP_004892658.1| - 0.045 13.7 0.0 0.099 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|352682134|ref|YP_004892658.1| - 0.05 13.1 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_20 PF12840.2 gi|352682134|ref|YP_004892658.1| - 0.051 13.3 0.0 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|352682134|ref|YP_004892658.1| - 0.064 12.9 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Sigma70_r1_1 PF03979.9 gi|352682134|ref|YP_004892658.1| - 0.083 12.8 0.2 0.15 12.0 0.1 1.7 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 Lant_dehyd_C PF04738.8 gi|352682134|ref|YP_004892658.1| - 0.11 10.7 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, C terminus Adenosine_kin PF04008.9 gi|352682135|ref|YP_004892659.1| - 5.7e-73 243.5 0.2 6.5e-73 243.3 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DEAD PF00270.24 gi|352682136|ref|YP_004892660.1| - 2e-28 98.9 0.0 1.3e-27 96.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|352682136|ref|YP_004892660.1| - 3.5e-18 65.2 0.0 1.1e-15 57.1 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|352682136|ref|YP_004892660.1| - 3.6e-13 49.8 0.1 1.4e-12 47.9 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) SNF2_N PF00176.18 gi|352682136|ref|YP_004892660.1| - 0.0023 16.7 0.0 0.0034 16.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.10 gi|352682136|ref|YP_004892660.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit HTH_45 PF14947.1 gi|352682136|ref|YP_004892660.1| - 0.053 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix Helicase_C_2 PF13307.1 gi|352682136|ref|YP_004892660.1| - 0.075 12.9 0.0 0.23 11.4 0.0 1.9 2 1 0 2 2 2 0 Helicase C-terminal domain SecA_DEAD PF07517.9 gi|352682136|ref|YP_004892660.1| - 0.11 11.8 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 SecA DEAD-like domain GCS2 PF04107.8 gi|352682136|ref|YP_004892660.1| - 0.11 11.5 0.0 0.31 10.1 0.0 1.7 1 0 0 1 1 1 0 Glutamate-cysteine ligase family 2(GCS2) tRNA-synt_1 PF00133.17 gi|352682137|ref|YP_004892661.1| - 1.3e-108 363.5 0.0 8.5e-108 360.9 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|352682137|ref|YP_004892661.1| - 6.1e-30 104.0 0.1 1.1e-29 103.1 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|352682137|ref|YP_004892661.1| - 1.3e-28 99.7 0.0 7.6e-17 61.0 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|352682137|ref|YP_004892661.1| - 0.0013 18.0 0.0 0.059 12.6 0.0 2.5 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|352682137|ref|YP_004892661.1| - 0.033 12.8 0.0 1.4 7.4 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) ACT PF01842.20 gi|352682138|ref|YP_004892662.1| - 1.3e-08 34.1 0.0 3.4e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|352682138|ref|YP_004892662.1| - 3.6e-05 24.0 0.4 0.00013 22.2 0.0 2.0 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|352682138|ref|YP_004892662.1| - 0.00044 19.9 0.0 0.0012 18.5 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|352682138|ref|YP_004892662.1| - 0.032 13.7 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 ACT domain ATP_bind_3 PF01171.15 gi|352682139|ref|YP_004892663.1| - 8.7e-12 44.9 0.0 2.2e-11 43.6 0.0 1.6 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|352682139|ref|YP_004892663.1| - 0.0003 20.6 0.1 0.016 15.0 0.1 2.2 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|352682139|ref|YP_004892663.1| - 0.015 14.7 1.0 0.015 14.7 0.7 2.2 2 0 0 2 2 2 0 RecR protein DUF2392 PF10288.4 gi|352682139|ref|YP_004892663.1| - 0.069 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2392) Asn_synthase PF00733.16 gi|352682139|ref|YP_004892663.1| - 0.073 12.5 0.0 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 Asparagine synthase DZR PF12773.2 gi|352682139|ref|YP_004892663.1| - 1.2 8.9 5.7 11 5.8 0.6 2.4 2 0 0 2 2 2 0 Double zinc ribbon DUF35_N PF12172.3 gi|352682140|ref|YP_004892664.1| - 0.0032 17.3 0.0 0.0038 17.0 0.0 1.1 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.1 gi|352682140|ref|YP_004892664.1| - 0.0032 16.9 0.5 0.0081 15.7 0.1 1.7 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352682140|ref|YP_004892664.1| - 0.0039 16.8 0.4 0.0093 15.6 0.1 1.7 1 1 1 2 2 2 1 zinc-ribbon domain zf-FCS PF06467.9 gi|352682140|ref|YP_004892664.1| - 0.069 12.7 0.1 0.087 12.4 0.1 1.1 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif UPF0547 PF10571.4 gi|352682140|ref|YP_004892664.1| - 0.1 12.3 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Thy1 PF02511.10 gi|352682141|ref|YP_004892665.1| - 4e-44 150.2 0.5 6e-44 149.6 0.4 1.2 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Ribosomal_L15e PF00827.12 gi|352682143|ref|YP_004892667.1| - 1.9e-56 190.6 11.6 2.2e-56 190.3 8.1 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|352682144|ref|YP_004892668.1| - 8.3e-17 61.3 0.0 2.7e-10 40.2 0.0 2.0 1 1 1 2 2 2 2 RNA binding DUF1424 PF07232.6 gi|352682144|ref|YP_004892668.1| - 0.076 11.7 0.0 0.09 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative rep protein (DUF1424) RNase_P_p30 PF01876.11 gi|352682145|ref|YP_004892669.1| - 0.0042 16.3 0.0 0.0076 15.4 0.0 1.5 1 1 0 1 1 1 1 RNase P subunit p30 MreD PF04093.7 gi|352682146|ref|YP_004892670.1| - 0.018 14.9 0.2 0.021 14.6 0.1 1.2 1 0 0 1 1 1 0 rod shape-determining protein MreD RimK PF08443.6 gi|352682147|ref|YP_004892671.1| - 7.2e-40 136.5 0.0 9.2e-40 136.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|352682147|ref|YP_004892671.1| - 3.9e-16 58.6 0.0 5.7e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|352682147|ref|YP_004892671.1| - 6.2e-15 55.4 0.0 9.8e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|352682147|ref|YP_004892671.1| - 1.1e-10 41.6 0.0 2e-10 40.7 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|352682147|ref|YP_004892671.1| - 2e-08 33.3 0.0 1.7e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ABC_tran PF00005.22 gi|352682149|ref|YP_004892673.1| - 7.9e-23 81.2 0.0 1.1e-22 80.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352682149|ref|YP_004892673.1| - 1.8e-11 44.5 0.2 1.6e-10 41.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|352682149|ref|YP_004892673.1| - 6.6e-06 25.5 0.1 0.00025 20.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352682149|ref|YP_004892673.1| - 3.5e-05 23.2 0.0 6.7e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|352682149|ref|YP_004892673.1| - 0.00021 21.1 0.0 0.00033 20.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|352682149|ref|YP_004892673.1| - 0.0004 19.8 0.0 0.62 9.4 0.0 2.1 2 0 0 2 2 2 2 MutS domain V AAA_23 PF13476.1 gi|352682149|ref|YP_004892673.1| - 0.00055 20.3 0.0 0.00076 19.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|352682149|ref|YP_004892673.1| - 0.0018 17.4 0.1 0.0026 16.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|352682149|ref|YP_004892673.1| - 0.013 15.6 0.0 0.03 14.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|352682149|ref|YP_004892673.1| - 0.015 16.1 0.0 0.025 15.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|352682149|ref|YP_004892673.1| - 0.022 13.5 0.1 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|352682149|ref|YP_004892673.1| - 0.026 14.8 0.0 0.073 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|352682149|ref|YP_004892673.1| - 0.028 14.0 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Rad17 PF03215.10 gi|352682149|ref|YP_004892673.1| - 0.031 12.9 0.0 0.039 12.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|352682149|ref|YP_004892673.1| - 0.036 13.7 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|352682149|ref|YP_004892673.1| - 0.052 13.4 0.0 0.087 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|352682149|ref|YP_004892673.1| - 0.053 12.9 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|352682149|ref|YP_004892673.1| - 0.06 13.3 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.14 gi|352682149|ref|YP_004892673.1| - 0.077 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|352682149|ref|YP_004892673.1| - 0.084 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|352682149|ref|YP_004892673.1| - 0.11 12.7 0.0 0.3 11.2 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|352682149|ref|YP_004892673.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_15 PF13175.1 gi|352682149|ref|YP_004892673.1| - 0.14 11.1 0.0 3.1 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|352682149|ref|YP_004892673.1| - 0.18 10.2 0.0 2.4 6.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.12 gi|352682150|ref|YP_004892674.1| - 2e-57 194.2 0.5 2.6e-57 193.9 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Toxin_47 PF15527.1 gi|352682150|ref|YP_004892674.1| - 0.035 13.8 0.0 0.084 12.6 0.0 1.6 1 0 0 1 1 1 0 Putative toxin 47 DUF2710 PF10921.3 gi|352682150|ref|YP_004892674.1| - 0.094 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) Aminotran_3 PF00202.16 gi|352682151|ref|YP_004892675.1| - 2e-104 349.1 0.0 2.3e-104 348.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|352682151|ref|YP_004892675.1| - 0.093 11.6 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II Sirohm_synth_C PF14823.1 gi|352682155|ref|YP_004892679.1| - 0.14 11.4 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Sirohaem biosynthesis protein C-terminal Beta-Casp PF10996.3 gi|352682156|ref|YP_004892680.1| - 6.8e-21 74.5 0.0 1.4e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|352682156|ref|YP_004892680.1| - 7e-18 64.9 1.0 2.5e-17 63.1 0.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|352682156|ref|YP_004892680.1| - 1.9e-12 47.1 0.1 5.2e-12 45.7 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|352682156|ref|YP_004892680.1| - 2.4e-12 46.4 0.0 4.1e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|352682156|ref|YP_004892680.1| - 0.12 12.1 0.0 0.54 9.9 0.0 2.0 1 1 1 2 2 2 0 Beta-lactamase superfamily domain KOW PF00467.24 gi|352682157|ref|YP_004892681.1| - 2.1e-08 33.5 6.8 2.1e-08 33.5 4.7 2.0 2 0 0 2 2 2 1 KOW motif KH_5 PF13184.1 gi|352682158|ref|YP_004892682.1| - 6e-06 25.9 0.9 9.9e-06 25.2 0.1 1.8 2 0 0 2 2 2 1 NusA-like KH domain tRNA-synt_2 PF00152.15 gi|352682159|ref|YP_004892683.1| - 5.1e-86 288.4 0.0 7.3e-86 287.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|352682159|ref|YP_004892683.1| - 9.3e-12 44.6 0.0 1.6e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|352682159|ref|YP_004892683.1| - 0.0019 17.4 0.2 0.25 10.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Usp PF00582.21 gi|352682160|ref|YP_004892684.1| - 2.6e-32 111.9 0.4 3.3e-32 111.6 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|352682160|ref|YP_004892684.1| - 0.051 14.0 0.0 4.4 7.8 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Pyr_redox PF00070.22 gi|352682160|ref|YP_004892684.1| - 0.076 13.4 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF2520 PF10728.4 gi|352682160|ref|YP_004892684.1| - 0.091 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2520) RQC PF09382.5 gi|352682160|ref|YP_004892684.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 RQC domain AHS1 PF02682.11 gi|352682161|ref|YP_004892685.1| - 0.088 12.2 0.2 0.21 11.0 0.1 1.6 2 0 0 2 2 2 0 Allophanate hydrolase subunit 1 NUDIX PF00293.23 gi|352682162|ref|YP_004892686.1| - 8.1e-24 83.7 0.0 9e-24 83.6 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain PCMT PF01135.14 gi|352682163|ref|YP_004892687.1| - 1.3e-62 211.1 0.0 1.5e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|352682163|ref|YP_004892687.1| - 1.7e-08 34.2 0.0 2.1e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352682163|ref|YP_004892687.1| - 3.9e-07 30.6 0.0 6.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|352682163|ref|YP_004892687.1| - 1.1e-06 28.6 0.0 2.3e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|352682163|ref|YP_004892687.1| - 2.3e-06 26.8 0.0 3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.9 gi|352682163|ref|YP_004892687.1| - 9.3e-06 25.1 0.0 1.8e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|352682163|ref|YP_004892687.1| - 0.00014 22.6 0.0 0.0002 22.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|352682163|ref|YP_004892687.1| - 0.0002 20.9 0.0 0.00026 20.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.13 gi|352682163|ref|YP_004892687.1| - 0.00049 19.2 0.0 0.00085 18.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.11 gi|352682163|ref|YP_004892687.1| - 0.0017 17.9 0.0 0.0042 16.7 0.0 1.6 2 0 0 2 2 2 1 Met-10+ like-protein Fibrillarin PF01269.12 gi|352682163|ref|YP_004892687.1| - 0.013 14.4 0.0 0.017 14.0 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Methyltransf_12 PF08242.7 gi|352682163|ref|YP_004892687.1| - 0.023 15.1 0.0 0.034 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352682163|ref|YP_004892687.1| - 0.029 14.8 0.0 0.064 13.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|352682163|ref|YP_004892687.1| - 0.041 12.9 0.0 0.056 12.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|352682163|ref|YP_004892687.1| - 0.045 14.1 0.0 0.062 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352682163|ref|YP_004892687.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|352682163|ref|YP_004892687.1| - 0.11 11.5 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_28 PF02636.12 gi|352682163|ref|YP_004892687.1| - 0.13 11.6 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DDE_Tnp_1_6 PF13751.1 gi|352682164|ref|YP_004892688.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain CbiA PF01656.18 gi|352682166|ref|YP_004892690.1| - 4.6e-10 39.2 0.0 1.1e-09 38.0 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|352682166|ref|YP_004892690.1| - 0.00039 20.3 0.0 0.00082 19.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|352682166|ref|YP_004892690.1| - 0.0032 17.1 0.1 0.27 10.8 0.0 2.3 2 1 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|352682166|ref|YP_004892690.1| - 0.036 13.1 0.2 0.11 11.5 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_25 PF13481.1 gi|352682166|ref|YP_004892690.1| - 0.75 9.1 2.6 3.3 7.0 0.3 2.7 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|352682167|ref|YP_004892691.1| - 2.1e-13 49.7 0.0 3.3e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_28 PF13521.1 gi|352682167|ref|YP_004892691.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|352682167|ref|YP_004892691.1| - 0.049 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|352682167|ref|YP_004892691.1| - 0.068 12.9 0.4 0.27 10.9 0.3 2.2 1 1 0 1 1 1 0 Part of AAA domain HTH_Crp_2 PF13545.1 gi|352682168|ref|YP_004892692.1| - 0.02 14.6 0.0 0.049 13.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Pribosyltran PF00156.22 gi|352682168|ref|YP_004892692.1| - 0.15 11.8 0.4 1 9.0 0.1 2.2 1 1 1 2 2 2 0 Phosphoribosyl transferase domain HTH_24 PF13412.1 gi|352682168|ref|YP_004892692.1| - 0.76 9.2 3.2 5.8 6.3 0.1 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF1628 PF07790.6 gi|352682171|ref|YP_004892695.1| - 0.0033 18.1 1.2 0.0058 17.3 0.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4330 PF14221.1 gi|352682171|ref|YP_004892695.1| - 0.022 14.6 0.2 0.036 13.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Bundlin PF05307.6 gi|352682171|ref|YP_004892695.1| - 0.056 13.3 0.1 0.1 12.4 0.1 1.6 1 0 0 1 1 1 0 Bundlin DUF3993 PF13158.1 gi|352682171|ref|YP_004892695.1| - 0.17 11.6 0.4 0.26 11.1 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3993) MacB_PCD PF12704.2 gi|352682171|ref|YP_004892695.1| - 0.67 9.5 4.6 1 8.8 3.2 1.4 1 1 0 1 1 1 0 MacB-like periplasmic core domain PalH PF08733.5 gi|352682176|ref|YP_004892700.1| - 0.053 12.3 0.2 0.065 12.0 0.1 1.2 1 0 0 1 1 1 0 PalH/RIM21 UPRTase PF14681.1 gi|352682178|ref|YP_004892702.1| - 2.2e-55 187.1 0.0 2.5e-55 186.9 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|352682178|ref|YP_004892702.1| - 3e-06 26.9 1.7 5.1e-06 26.2 1.2 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Peptidase_M50 PF02163.17 gi|352682179|ref|YP_004892703.1| - 3.1e-14 52.3 8.6 3.1e-14 52.3 5.9 2.3 2 1 0 2 2 2 1 Peptidase family M50 Peptidase_M1 PF01433.15 gi|352682180|ref|YP_004892704.1| - 8.7e-62 209.4 0.0 2.2e-61 208.1 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|352682180|ref|YP_004892704.1| - 2.9e-30 104.3 11.4 5.3e-11 42.6 0.0 4.3 1 1 3 5 5 5 5 HEAT repeats HEAT_PBS PF03130.11 gi|352682180|ref|YP_004892704.1| - 2.4e-12 46.0 22.1 0.00012 22.1 0.2 6.8 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat Peptidase_MA_2 PF13485.1 gi|352682180|ref|YP_004892704.1| - 9.2e-11 41.8 0.7 2.7e-10 40.3 0.5 1.8 1 0 0 1 1 1 1 Peptidase MA superfamily HEAT PF02985.17 gi|352682180|ref|YP_004892704.1| - 1.1e-09 37.5 0.7 0.97 9.6 0.1 7.0 7 0 0 7 7 7 2 HEAT repeat HEAT_EZ PF13513.1 gi|352682180|ref|YP_004892704.1| - 0.0026 18.2 10.5 0.75 10.3 0.0 5.4 2 2 5 7 7 7 2 HEAT-like repeat Vitellogenin_N PF01347.17 gi|352682180|ref|YP_004892704.1| - 0.026 12.7 0.2 0.71 8.0 0.0 2.2 2 0 0 2 2 2 0 Lipoprotein amino terminal region Atg14 PF10186.4 gi|352682180|ref|YP_004892704.1| - 1.1 8.0 4.6 14 4.4 0.0 2.2 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 PhoH PF02562.11 gi|352682181|ref|YP_004892705.1| - 1.8e-51 174.3 0.0 2.2e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.12 gi|352682181|ref|YP_004892705.1| - 1.2e-07 31.2 0.0 4.3e-06 26.1 0.0 2.5 1 1 1 2 2 2 1 KH domain KH_5 PF13184.1 gi|352682181|ref|YP_004892705.1| - 1.2e-07 31.4 0.0 2.6e-06 27.1 0.0 2.4 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|352682181|ref|YP_004892705.1| - 0.00021 20.8 0.0 0.0011 18.6 0.0 2.1 2 0 0 2 2 2 1 KH domain IstB_IS21 PF01695.12 gi|352682181|ref|YP_004892705.1| - 0.00037 19.9 0.0 0.00068 19.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.1 gi|352682181|ref|YP_004892705.1| - 0.00069 19.2 0.0 0.011 15.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352682181|ref|YP_004892705.1| - 0.0015 18.6 0.0 0.0028 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|352682181|ref|YP_004892705.1| - 0.012 15.9 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter KH_3 PF13014.1 gi|352682181|ref|YP_004892705.1| - 0.021 14.4 0.0 0.062 12.9 0.0 1.8 1 0 0 1 1 1 0 KH domain Arch_ATPase PF01637.13 gi|352682181|ref|YP_004892705.1| - 0.023 14.3 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Acylphosphatase PF00708.13 gi|352682182|ref|YP_004892706.1| - 2.1e-17 63.0 0.0 2.3e-17 62.8 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase CysG_dimeriser PF10414.4 gi|352682182|ref|YP_004892706.1| - 0.025 14.0 0.4 0.036 13.5 0.2 1.3 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region BLUF PF04940.7 gi|352682182|ref|YP_004892706.1| - 0.055 13.1 0.0 0.058 13.1 0.0 1.1 1 0 0 1 1 1 0 Sensors of blue-light using FAD Peptidase_A24 PF01478.13 gi|352682183|ref|YP_004892707.1| - 9.1e-05 22.5 9.3 9.1e-05 22.5 6.4 1.5 2 0 0 2 2 2 1 Type IV leader peptidase family YbjM PF11045.3 gi|352682183|ref|YP_004892707.1| - 0.47 10.2 3.1 1.4 8.6 2.1 1.8 1 1 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae bact-PGI_C PF10432.4 gi|352682184|ref|YP_004892708.1| - 2.8e-24 85.5 0.0 4.8e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|352682184|ref|YP_004892708.1| - 1e-06 28.4 0.0 2.6e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|352682184|ref|YP_004892708.1| - 0.00017 21.2 0.1 0.00051 19.7 0.0 1.8 2 0 0 2 2 2 1 SIS domain TPP_enzyme_N PF02776.13 gi|352682184|ref|YP_004892708.1| - 0.065 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ResIII PF04851.10 gi|352682185|ref|YP_004892709.1| - 4.2e-16 59.3 0.1 2.6e-14 53.4 0.0 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|352682185|ref|YP_004892709.1| - 1.1e-14 54.0 0.5 2.3e-14 52.9 0.3 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|352682185|ref|YP_004892709.1| - 9.6e-11 41.4 0.0 3e-09 36.5 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|352682185|ref|YP_004892709.1| - 6.1e-06 25.2 0.0 1.8e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain SIS_2 PF13580.1 gi|352682185|ref|YP_004892709.1| - 0.12 12.0 1.9 0.76 9.4 1.3 2.2 1 1 0 1 1 1 0 SIS domain FTP PF07504.8 gi|352682185|ref|YP_004892709.1| - 5.4 6.5 6.0 12 5.4 0.1 3.5 4 0 0 4 4 4 0 Fungalysin/Thermolysin Propeptide Motif DUF3169 PF11368.3 gi|352682186|ref|YP_004892710.1| - 0.0079 15.4 3.9 0.008 15.4 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) MMgT PF10270.4 gi|352682186|ref|YP_004892710.1| - 0.036 14.4 0.7 0.038 14.4 0.5 1.1 1 0 0 1 1 1 0 Membrane magnesium transporter GP41 PF00517.12 gi|352682186|ref|YP_004892710.1| - 0.22 11.0 2.1 0.25 10.8 1.4 1.2 1 0 0 1 1 1 0 Retroviral envelope protein DUF1426 PF07234.6 gi|352682186|ref|YP_004892710.1| - 0.62 9.8 2.6 0.65 9.7 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1426) Vpu PF00558.14 gi|352682186|ref|YP_004892710.1| - 1.9 8.1 5.9 2.2 7.9 4.1 1.1 1 0 0 1 1 1 0 Vpu protein PsbH PF00737.15 gi|352682187|ref|YP_004892711.1| - 8.9 5.9 7.6 15 5.2 5.3 1.4 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein Fer4_7 PF12838.2 gi|352682188|ref|YP_004892712.1| - 3.7e-14 52.8 20.9 1.8e-08 34.6 7.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352682188|ref|YP_004892712.1| - 3.5e-10 39.2 14.6 2.7e-09 36.4 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|352682188|ref|YP_004892712.1| - 6.9e-10 38.1 17.8 1.7e-09 36.8 2.2 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352682188|ref|YP_004892712.1| - 2.8e-09 37.0 21.3 7.1e-06 26.1 8.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352682188|ref|YP_004892712.1| - 3.1e-09 36.5 8.9 4.1e-09 36.1 6.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682188|ref|YP_004892712.1| - 7.3e-09 35.2 7.3 7.3e-09 35.2 5.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352682188|ref|YP_004892712.1| - 1.3e-08 34.2 9.2 4.1e-07 29.5 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|352682188|ref|YP_004892712.1| - 5.4e-08 33.4 7.9 0.00021 21.9 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|352682188|ref|YP_004892712.1| - 8.5e-08 32.6 10.9 3.6e-07 30.6 7.6 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|352682188|ref|YP_004892712.1| - 1.7e-05 24.7 12.0 3.4e-05 23.8 0.9 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352682188|ref|YP_004892712.1| - 3.9e-05 23.5 19.6 0.0018 18.2 6.9 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352682188|ref|YP_004892712.1| - 0.00011 22.5 3.8 0.0074 16.6 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|352682188|ref|YP_004892712.1| - 0.0003 21.1 17.8 0.0042 17.5 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|352682188|ref|YP_004892712.1| - 0.00087 19.1 6.1 0.013 15.3 4.1 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352682188|ref|YP_004892712.1| - 0.0054 17.0 10.2 0.06 13.6 1.5 2.5 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|352682188|ref|YP_004892712.1| - 0.013 15.8 14.5 0.83 10.0 10.0 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain SIR2 PF02146.12 gi|352682189|ref|YP_004892713.1| - 1.7e-50 171.1 0.0 2.1e-50 170.9 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|352682189|ref|YP_004892713.1| - 0.00048 19.8 0.0 0.013 15.2 0.0 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF35_N PF12172.3 gi|352682189|ref|YP_004892713.1| - 0.0031 17.3 1.3 0.49 10.3 0.0 2.5 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) Toxin_39 PF15500.1 gi|352682190|ref|YP_004892714.1| - 0.014 15.4 0.1 0.024 14.7 0.1 1.3 1 0 0 1 1 1 0 Putative RNase-like toxin DUF309 PF03745.9 gi|352682191|ref|YP_004892715.1| - 1.1e-13 50.4 0.5 1.7e-13 49.8 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) PAPS_reduct PF01507.14 gi|352682195|ref|YP_004892719.1| - 2e-43 148.2 0.0 3.3e-43 147.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_10 PF13237.1 gi|352682195|ref|YP_004892719.1| - 3.4e-08 33.1 20.2 2.3e-06 27.3 7.4 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352682195|ref|YP_004892719.1| - 4.3e-08 33.4 8.2 9.6e-08 32.3 5.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352682195|ref|YP_004892719.1| - 3.2e-07 29.6 8.9 1.4e-05 24.4 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352682195|ref|YP_004892719.1| - 7e-07 29.0 8.1 2.3e-06 27.3 5.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352682195|ref|YP_004892719.1| - 2e-05 24.2 11.0 0.00025 20.7 0.8 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352682195|ref|YP_004892719.1| - 4e-05 23.2 2.2 4e-05 23.2 1.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352682195|ref|YP_004892719.1| - 4.2e-05 23.7 6.5 0.00011 22.3 4.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352682195|ref|YP_004892719.1| - 0.00024 21.0 3.8 0.027 14.5 0.8 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|352682195|ref|YP_004892719.1| - 0.00024 20.9 3.0 0.00059 19.6 2.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352682195|ref|YP_004892719.1| - 0.00037 21.1 9.0 0.66 10.7 6.8 3.0 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|352682195|ref|YP_004892719.1| - 0.0024 18.2 6.7 0.67 10.4 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|352682195|ref|YP_004892719.1| - 0.0081 16.5 0.7 0.0081 16.5 0.5 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|352682195|ref|YP_004892719.1| - 0.01 16.2 9.0 0.089 13.1 1.2 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352682195|ref|YP_004892719.1| - 0.013 15.7 11.4 0.096 13.0 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|352682195|ref|YP_004892719.1| - 0.023 15.2 0.5 0.023 15.2 0.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain ATP_bind_4 PF01902.12 gi|352682195|ref|YP_004892719.1| - 0.16 11.2 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 ATP-binding region QueC PF06508.8 gi|352682195|ref|YP_004892719.1| - 0.18 11.0 0.3 4.5 6.5 0.0 2.7 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC Fer4_3 PF12798.2 gi|352682195|ref|YP_004892719.1| - 5.7 7.7 21.9 1.1 9.9 2.4 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain NTP_transferase PF00483.18 gi|352682196|ref|YP_004892720.1| - 1.3e-35 122.9 0.0 1.5e-35 122.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|352682196|ref|YP_004892720.1| - 2.2e-15 57.1 0.1 3.4e-15 56.4 0.1 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|352682196|ref|YP_004892720.1| - 0.0024 17.4 0.0 0.0055 16.2 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AAA_18 PF13238.1 gi|352682198|ref|YP_004892722.1| - 2.3e-18 66.7 0.0 3.8e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352682198|ref|YP_004892722.1| - 9.1e-13 49.0 0.5 1.4e-12 48.5 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|352682198|ref|YP_004892722.1| - 5.4e-06 26.6 0.0 8.9e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|352682198|ref|YP_004892722.1| - 6e-06 26.0 0.2 1.7e-05 24.5 0.1 1.8 1 1 1 2 2 2 1 NTPase AAA_28 PF13521.1 gi|352682198|ref|YP_004892722.1| - 2.9e-05 24.1 0.9 6.1e-05 23.0 0.3 1.8 1 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352682198|ref|YP_004892722.1| - 6.5e-05 22.6 0.1 0.00014 21.5 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain MobB PF03205.9 gi|352682198|ref|YP_004892722.1| - 0.00021 20.9 0.1 0.00075 19.2 0.1 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|352682198|ref|YP_004892722.1| - 0.00071 19.4 0.2 0.0022 17.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352682198|ref|YP_004892722.1| - 0.0014 18.7 0.2 0.0026 17.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352682198|ref|YP_004892722.1| - 0.0023 17.9 0.2 0.0027 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|352682198|ref|YP_004892722.1| - 0.003 17.1 0.0 0.0054 16.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|352682198|ref|YP_004892722.1| - 0.0032 17.1 0.1 0.0059 16.3 0.1 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|352682198|ref|YP_004892722.1| - 0.0084 15.7 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain CbiA PF01656.18 gi|352682198|ref|YP_004892722.1| - 0.0087 15.4 0.0 0.012 15.0 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain RuvB_N PF05496.7 gi|352682198|ref|YP_004892722.1| - 0.0099 14.9 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|352682198|ref|YP_004892722.1| - 0.011 15.3 0.0 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|352682198|ref|YP_004892722.1| - 0.011 14.9 0.0 0.019 14.1 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ArgK PF03308.11 gi|352682198|ref|YP_004892722.1| - 0.014 14.1 0.1 0.023 13.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein SKI PF01202.17 gi|352682198|ref|YP_004892722.1| - 0.015 15.1 0.1 0.043 13.6 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase AAA_24 PF13479.1 gi|352682198|ref|YP_004892722.1| - 0.017 14.7 0.1 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|352682198|ref|YP_004892722.1| - 0.023 14.8 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.12 gi|352682198|ref|YP_004892722.1| - 0.026 14.0 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Cytidylate_kin2 PF13189.1 gi|352682198|ref|YP_004892722.1| - 0.047 13.5 0.1 0.098 12.5 0.1 1.5 1 0 0 1 1 1 0 Cytidylate kinase-like family ADK PF00406.17 gi|352682198|ref|YP_004892722.1| - 0.048 13.5 0.4 0.37 10.6 0.2 2.4 1 1 0 1 1 1 0 Adenylate kinase AAA_26 PF13500.1 gi|352682198|ref|YP_004892722.1| - 0.055 13.0 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|352682198|ref|YP_004892722.1| - 0.057 12.8 0.1 0.083 12.3 0.1 1.5 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|352682198|ref|YP_004892722.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|352682198|ref|YP_004892722.1| - 0.089 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Thymidylate_kin PF02223.12 gi|352682198|ref|YP_004892722.1| - 0.1 11.9 0.1 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA_14 PF13173.1 gi|352682198|ref|YP_004892722.1| - 0.11 12.3 0.1 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|352682198|ref|YP_004892722.1| - 0.13 10.8 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MMR_HSR1 PF01926.18 gi|352682198|ref|YP_004892722.1| - 0.16 11.8 0.0 0.23 11.4 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|352682198|ref|YP_004892722.1| - 0.18 11.1 0.7 0.36 10.1 0.5 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|352682198|ref|YP_004892722.1| - 0.19 11.1 0.1 0.28 10.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain tRNA-synt_2 PF00152.15 gi|352682199|ref|YP_004892723.1| - 3.9e-82 275.7 0.0 6.1e-82 275.0 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|352682199|ref|YP_004892723.1| - 2.5e-13 49.6 0.0 6.3e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|352682199|ref|YP_004892723.1| - 0.014 14.6 0.7 0.085 12.0 0.0 2.4 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|352682199|ref|YP_004892723.1| - 0.09 12.3 0.1 11 5.6 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) NAD_binding_2 PF03446.10 gi|352682201|ref|YP_004892725.1| - 7.2e-16 58.4 0.6 1.4e-15 57.4 0.4 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|352682201|ref|YP_004892725.1| - 1.6e-08 34.6 0.1 2.9e-08 33.8 0.1 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|352682201|ref|YP_004892725.1| - 2.5e-05 23.5 0.0 3.8e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|352682201|ref|YP_004892725.1| - 2.9e-05 24.3 0.2 8.8e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|352682201|ref|YP_004892725.1| - 0.00071 19.6 0.1 0.0013 18.8 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|352682201|ref|YP_004892725.1| - 0.0027 17.3 0.9 0.0039 16.8 0.6 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|352682201|ref|YP_004892725.1| - 0.0074 15.5 0.1 0.012 14.8 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|352682201|ref|YP_004892725.1| - 0.0095 15.6 0.1 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.4 gi|352682201|ref|YP_004892725.1| - 0.0098 15.6 0.2 0.021 14.5 0.1 1.6 1 0 0 1 1 1 1 Rossmann-like domain Shikimate_DH PF01488.15 gi|352682201|ref|YP_004892725.1| - 0.0099 15.9 0.1 0.017 15.2 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|352682201|ref|YP_004892725.1| - 0.05 13.0 0.1 0.08 12.3 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sua5_yciO_yrdC PF01300.13 gi|352682202|ref|YP_004892726.1| - 4.3e-58 195.5 0.0 7e-58 194.8 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|352682202|ref|YP_004892726.1| - 1.2e-29 102.9 0.0 1.7e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding MttA_Hcf106 PF02416.11 gi|352682202|ref|YP_004892726.1| - 0.036 13.1 0.8 0.37 9.9 0.1 2.5 3 0 0 3 3 3 0 mttA/Hcf106 family Methyltransf_11 PF08241.7 gi|352682203|ref|YP_004892727.1| - 6.4e-06 26.5 0.0 1.1e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352682203|ref|YP_004892727.1| - 0.00022 21.5 0.0 0.00038 20.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352682203|ref|YP_004892727.1| - 0.0018 17.8 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|352682203|ref|YP_004892727.1| - 0.0026 16.8 0.0 0.0045 16.1 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.1 gi|352682203|ref|YP_004892727.1| - 0.07 12.8 0.0 0.17 11.6 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352682203|ref|YP_004892727.1| - 0.074 13.6 0.0 0.14 12.7 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Pribosyltran_N PF13793.1 gi|352682204|ref|YP_004892728.1| - 7.1e-24 83.7 0.0 1.3e-21 76.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|352682204|ref|YP_004892728.1| - 8.4e-13 48.1 0.2 4.2e-12 45.8 0.0 2.2 4 0 0 4 4 4 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|352682204|ref|YP_004892728.1| - 2.3e-07 30.7 0.1 7.5e-07 29.0 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|352682204|ref|YP_004892728.1| - 0.075 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Hist_deacetyl PF00850.14 gi|352682205|ref|YP_004892729.1| - 6.1e-72 242.5 0.0 7.6e-72 242.2 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain DUF2204 PF09970.4 gi|352682206|ref|YP_004892730.1| - 0.07 12.5 1.6 0.08 12.4 1.1 1.0 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Creatininase PF02633.9 gi|352682207|ref|YP_004892731.1| - 8.1e-37 126.5 0.0 1.1e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase GGDN PF05165.7 gi|352682208|ref|YP_004892732.1| - 2e-29 102.3 0.0 1.2e-13 50.6 0.0 2.1 1 1 1 2 2 2 2 GGDN family RibD_C PF01872.12 gi|352682209|ref|YP_004892733.1| - 2.5e-47 161.0 0.0 2.8e-47 160.9 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DHBP_synthase PF00926.14 gi|352682210|ref|YP_004892734.1| - 1.9e-50 170.7 0.0 2.2e-50 170.6 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase HTH_IclR PF09339.5 gi|352682210|ref|YP_004892734.1| - 0.016 14.7 0.9 2.4 7.7 0.0 3.7 3 1 1 4 4 4 0 IclR helix-turn-helix domain Glyco_trans_1_4 PF13692.1 gi|352682210|ref|YP_004892734.1| - 0.057 13.5 0.0 0.27 11.4 0.0 2.0 2 1 0 2 2 2 0 Glycosyl transferases group 1 CxxCxxCC PF03692.10 gi|352682211|ref|YP_004892735.1| - 2e-17 63.4 1.0 3e-17 62.8 0.7 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF2621 PF11084.3 gi|352682211|ref|YP_004892735.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) 2-Hacid_dh_C PF02826.14 gi|352682212|ref|YP_004892736.1| - 1.9e-63 212.8 0.0 2.8e-63 212.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|352682212|ref|YP_004892736.1| - 6.3e-35 119.5 0.0 7e-35 119.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|352682212|ref|YP_004892736.1| - 1.6e-09 37.8 0.0 1.1e-08 35.1 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|352682212|ref|YP_004892736.1| - 4.4e-06 27.0 0.1 1.9e-05 25.0 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|352682212|ref|YP_004892736.1| - 0.0007 19.0 0.0 0.0037 16.6 0.0 2.1 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|352682212|ref|YP_004892736.1| - 0.0016 18.5 0.0 0.0032 17.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|352682212|ref|YP_004892736.1| - 0.005 17.0 0.0 0.013 15.7 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.16 gi|352682212|ref|YP_004892736.1| - 0.0054 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|352682212|ref|YP_004892736.1| - 0.0055 16.4 0.1 0.049 13.3 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|352682212|ref|YP_004892736.1| - 0.038 13.4 0.1 0.088 12.2 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|352682212|ref|YP_004892736.1| - 0.045 13.6 0.0 0.11 12.3 0.0 1.7 1 1 0 1 1 1 0 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|352682212|ref|YP_004892736.1| - 0.047 13.6 0.5 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding ELFV_dehydrog PF00208.16 gi|352682212|ref|YP_004892736.1| - 0.057 12.9 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Mur_ligase PF01225.20 gi|352682212|ref|YP_004892736.1| - 0.081 13.0 0.4 5.4 7.1 0.0 3.0 3 1 0 3 3 3 0 Mur ligase family, catalytic domain UPF0066 PF01980.11 gi|352682213|ref|YP_004892737.1| - 1.5e-31 108.8 0.0 1.9e-31 108.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 DUF4382 PF14321.1 gi|352682214|ref|YP_004892738.1| - 6.7e-20 71.5 0.0 8.4e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) Choline_transpo PF04515.7 gi|352682214|ref|YP_004892738.1| - 0.09 11.5 0.3 0.12 11.1 0.2 1.1 1 0 0 1 1 1 0 Plasma-membrane choline transporter NUDIX PF00293.23 gi|352682215|ref|YP_004892739.1| - 3.8e-16 58.9 0.3 4.9e-16 58.6 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain CoA_transf_3 PF02515.12 gi|352682217|ref|YP_004892741.1| - 2e-60 203.2 0.0 3.2e-60 202.6 0.0 1.3 1 0 0 1 1 1 1 CoA-transferase family III MarC PF01914.12 gi|352682218|ref|YP_004892742.1| - 1.2e-36 125.7 13.8 1.6e-36 125.3 9.6 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Cren7 PF11520.3 gi|352682219|ref|YP_004892743.1| - 8.5e-23 79.7 1.6 8.7e-23 79.7 1.1 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 Meth_synt_2 PF01717.13 gi|352682220|ref|YP_004892744.1| - 2.2e-42 145.1 0.0 1.2e-25 90.2 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|352682220|ref|YP_004892744.1| - 7.1e-10 38.6 0.0 0.00069 18.9 0.0 3.2 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain DUF35 PF01796.12 gi|352682221|ref|YP_004892745.1| - 2.6e-14 53.1 0.3 4.2e-14 52.5 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|352682221|ref|YP_004892745.1| - 1.9e-10 40.3 0.5 1.9e-10 40.3 0.4 2.3 3 0 0 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|352682221|ref|YP_004892745.1| - 0.024 13.9 0.6 2.4 7.5 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Cucumo_coat PF00760.13 gi|352682221|ref|YP_004892745.1| - 0.074 11.9 0.0 0.31 9.9 0.0 1.9 2 0 0 2 2 2 0 Cucumovirus coat protein zf-C3HC4_3 PF13920.1 gi|352682221|ref|YP_004892745.1| - 0.089 12.4 0.9 0.14 11.8 0.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NRDD PF13597.1 gi|352682221|ref|YP_004892745.1| - 0.24 9.4 0.4 0.31 9.0 0.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-TFIIB PF13453.1 gi|352682221|ref|YP_004892745.1| - 1.5 8.0 4.3 2.1 7.6 0.0 3.0 4 0 0 4 4 4 0 Transcription factor zinc-finger Thiolase_N PF00108.18 gi|352682222|ref|YP_004892746.1| - 1.1e-13 50.8 0.1 2.4e-11 43.1 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|352682222|ref|YP_004892746.1| - 4e-09 35.9 0.1 8e-08 31.7 0.0 2.9 2 1 1 3 3 3 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|352682222|ref|YP_004892746.1| - 4e-05 23.2 0.1 0.00058 19.4 0.1 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|352682222|ref|YP_004892746.1| - 0.00032 20.2 7.6 0.00035 20.1 1.3 3.0 2 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain HSP70 PF00012.15 gi|352682222|ref|YP_004892746.1| - 0.059 11.2 0.0 0.081 10.8 0.0 1.1 1 0 0 1 1 1 0 Hsp70 protein Glyco_hydro_11 PF00457.12 gi|352682222|ref|YP_004892746.1| - 0.08 12.2 0.7 0.19 11.0 0.3 1.6 1 1 0 2 2 2 0 Glycosyl hydrolases family 11 Acyl-CoA_dh_1 PF00441.19 gi|352682223|ref|YP_004892747.1| - 6.2e-43 146.4 3.7 6.2e-43 146.4 2.6 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|352682223|ref|YP_004892747.1| - 2.1e-34 118.5 0.5 7.5e-34 116.7 0.0 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|352682223|ref|YP_004892747.1| - 3.9e-20 71.0 0.0 6.7e-20 70.3 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|352682223|ref|YP_004892747.1| - 2.9e-19 69.6 1.4 4.7e-19 68.9 0.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|352682224|ref|YP_004892748.1| - 4.8e-108 361.2 0.0 5.7e-108 360.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352682224|ref|YP_004892748.1| - 1.6e-19 70.6 0.4 5.9e-19 68.8 0.3 2.1 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1967 PF09269.6 gi|352682224|ref|YP_004892748.1| - 0.093 12.4 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) DUF1404 PF07185.6 gi|352682224|ref|YP_004892748.1| - 0.14 11.6 0.2 0.25 10.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1404) AMP-binding PF00501.23 gi|352682225|ref|YP_004892749.1| - 1.9e-74 250.5 0.0 2.4e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352682225|ref|YP_004892749.1| - 2.5e-16 60.3 0.3 6.9e-16 58.9 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Peptidase_M42 PF05343.9 gi|352682226|ref|YP_004892750.1| - 3.9e-102 340.9 0.1 4.5e-102 340.7 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|352682226|ref|YP_004892750.1| - 2e-12 47.0 0.0 3.3e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|352682226|ref|YP_004892750.1| - 7e-05 22.6 0.2 0.00017 21.4 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|352682226|ref|YP_004892750.1| - 0.022 13.2 0.0 0.05 12.0 0.0 1.5 2 0 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) Nup35_RRM_2 PF14605.1 gi|352682226|ref|YP_004892750.1| - 0.091 12.5 0.0 0.52 10.1 0.0 2.2 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif SM-ATX PF14438.1 gi|352682226|ref|YP_004892750.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Ataxin 2 SM domain ECH PF00378.15 gi|352682227|ref|YP_004892751.1| - 1.1e-69 234.3 0.0 1.9e-69 233.5 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|352682227|ref|YP_004892751.1| - 1.4e-64 217.0 0.7 2.2e-64 216.4 0.5 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|352682227|ref|YP_004892751.1| - 1.7e-51 172.5 0.2 1e-25 89.9 0.0 3.0 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|352682227|ref|YP_004892751.1| - 5.6e-05 23.0 0.0 0.00024 20.9 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|352682227|ref|YP_004892751.1| - 9.9e-05 22.6 0.8 0.00047 20.5 0.6 2.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|352682227|ref|YP_004892751.1| - 0.00021 21.0 0.1 0.00053 19.7 0.1 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ECH_C PF13766.1 gi|352682227|ref|YP_004892751.1| - 0.0032 17.5 0.0 0.019 15.1 0.0 2.2 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region Pyr_redox_2 PF07992.9 gi|352682227|ref|YP_004892751.1| - 0.0034 17.2 0.1 0.0083 16.0 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|352682227|ref|YP_004892751.1| - 0.0052 17.1 0.3 0.022 15.0 0.1 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain Pyr_redox PF00070.22 gi|352682227|ref|YP_004892751.1| - 0.015 15.7 3.1 0.028 14.8 0.2 2.7 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|352682227|ref|YP_004892751.1| - 0.018 14.4 0.1 0.058 12.7 0.0 1.9 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|352682227|ref|YP_004892751.1| - 0.025 14.5 0.6 0.14 12.1 0.1 2.5 3 0 0 3 3 3 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|352682227|ref|YP_004892751.1| - 0.051 12.7 0.1 0.1 11.7 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|352682227|ref|YP_004892751.1| - 0.11 12.8 0.4 0.31 11.3 0.3 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|352682227|ref|YP_004892751.1| - 0.11 11.9 0.1 0.3 10.6 0.1 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|352682227|ref|YP_004892751.1| - 0.14 11.9 0.5 0.37 10.6 0.4 1.8 1 0 0 1 1 1 0 ThiF family DAO PF01266.19 gi|352682227|ref|YP_004892751.1| - 0.2 10.5 1.3 0.37 9.6 0.9 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thiolase_N PF00108.18 gi|352682228|ref|YP_004892752.1| - 1.6e-71 240.3 0.0 2.2e-71 239.9 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|352682228|ref|YP_004892752.1| - 3.3e-48 162.1 0.4 1.4e-47 160.1 0.2 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|352682228|ref|YP_004892752.1| - 2.9e-07 30.2 0.1 6.3e-06 25.8 0.0 2.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.5 gi|352682228|ref|YP_004892752.1| - 0.025 14.6 0.2 2.2 8.3 0.0 3.3 3 1 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SpoVAD PF07451.6 gi|352682228|ref|YP_004892752.1| - 0.093 11.1 0.0 0.19 10.1 0.0 1.4 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) eIF-5_eIF-2B PF01873.12 gi|352682229|ref|YP_004892753.1| - 1.7e-32 111.6 0.0 2.1e-32 111.4 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 zf-ribbon_3 PF13248.1 gi|352682229|ref|YP_004892753.1| - 0.0018 17.3 1.2 1.3 8.3 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2387 PF09526.5 gi|352682229|ref|YP_004892753.1| - 0.0026 17.6 0.3 0.0048 16.7 0.2 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|352682229|ref|YP_004892753.1| - 0.0031 16.7 0.7 0.0052 16.0 0.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|352682229|ref|YP_004892753.1| - 0.0034 17.6 0.3 0.0061 16.8 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar SUI1 PF01253.17 gi|352682229|ref|YP_004892753.1| - 0.019 14.7 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor SUI1 Elf1 PF05129.8 gi|352682229|ref|YP_004892753.1| - 0.025 14.2 0.1 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Tmemb_55A PF09788.4 gi|352682229|ref|YP_004892753.1| - 0.028 13.5 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A OrfB_Zn_ribbon PF07282.6 gi|352682229|ref|YP_004892753.1| - 0.033 13.8 0.1 0.055 13.1 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|352682229|ref|YP_004892753.1| - 0.034 13.9 1.3 0.21 11.4 0.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DNA_ligase_ZBD PF03119.11 gi|352682229|ref|YP_004892753.1| - 0.035 13.8 0.7 0.094 12.4 0.5 1.7 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|352682229|ref|YP_004892753.1| - 0.056 13.2 0.3 0.094 12.5 0.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|352682229|ref|YP_004892753.1| - 0.19 10.9 1.0 0.35 10.1 0.7 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|352682229|ref|YP_004892753.1| - 0.32 10.9 1.5 18 5.4 0.1 2.1 1 1 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|352682229|ref|YP_004892753.1| - 0.71 9.8 2.9 2 8.4 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RRN7 PF11781.3 gi|352682229|ref|YP_004892753.1| - 0.97 8.9 3.4 7 6.2 2.4 2.0 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 TusA PF01206.12 gi|352682230|ref|YP_004892754.1| - 2.3e-11 43.1 0.0 2.5e-11 43.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Lem_TRP PF08262.6 gi|352682230|ref|YP_004892754.1| - 0.11 12.2 0.2 0.25 11.2 0.1 1.6 1 0 0 1 1 1 0 Leucophaea maderae tachykinin-related peptide DrsE PF02635.10 gi|352682231|ref|YP_004892755.1| - 3.7e-11 43.1 0.0 4.5e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|352682231|ref|YP_004892755.1| - 3.9e-11 42.9 0.2 6e-10 39.0 0.1 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family Glyco_transf_4 PF13439.1 gi|352682231|ref|YP_004892755.1| - 0.089 12.5 0.0 0.56 9.9 0.0 1.9 1 1 1 2 2 2 0 Glycosyltransferase Family 4 RtcB PF01139.12 gi|352682232|ref|YP_004892756.1| - 1.5e-151 505.2 0.0 1.7e-151 505.0 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF134 PF02001.11 gi|352682232|ref|YP_004892756.1| - 0.078 12.8 0.2 0.78 9.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF134 CorA PF01544.13 gi|352682233|ref|YP_004892757.1| - 1.2e-20 73.7 0.9 1.4e-20 73.4 0.6 1.2 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein HHH_5 PF14520.1 gi|352682233|ref|YP_004892757.1| - 0.0039 17.3 0.4 0.048 13.8 0.3 2.2 1 1 0 1 1 1 1 Helix-hairpin-helix domain ARPC4 PF05856.7 gi|352682233|ref|YP_004892757.1| - 0.0092 15.3 0.0 0.025 13.9 0.0 1.6 1 1 0 1 1 1 1 ARP2/3 complex 20 kDa subunit (ARPC4) DUF1512 PF07431.7 gi|352682234|ref|YP_004892758.1| - 4e-125 417.2 0.0 4.6e-125 417.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Reo_sigmaC PF04582.7 gi|352682237|ref|YP_004892761.1| - 9.8e-06 24.9 18.1 0.029 13.5 1.7 3.8 1 1 2 4 4 4 2 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|352682237|ref|YP_004892761.1| - 4.4e-05 22.1 37.3 8.6e-05 21.2 6.9 2.7 1 1 2 3 3 3 2 AAA domain Baculo_PEP_C PF04513.7 gi|352682237|ref|YP_004892761.1| - 0.00037 20.3 18.6 0.6 9.9 0.1 4.9 2 1 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|352682237|ref|YP_004892761.1| - 0.00042 20.1 14.8 0.25 11.2 0.2 5.6 1 1 5 6 6 6 1 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|352682237|ref|YP_004892761.1| - 0.0013 18.9 18.6 16 5.8 0.6 6.0 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein MCPsignal PF00015.16 gi|352682237|ref|YP_004892761.1| - 0.0017 17.9 19.7 0.21 11.1 4.9 4.4 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain IFT57 PF10498.4 gi|352682237|ref|YP_004892761.1| - 0.0027 16.5 38.8 0.039 12.6 3.0 4.1 1 1 2 4 4 4 2 Intra-flagellar transport protein 57 IncA PF04156.9 gi|352682237|ref|YP_004892761.1| - 0.0028 17.2 63.9 0.24 10.9 15.6 4.2 1 1 2 3 3 3 2 IncA protein DUF3552 PF12072.3 gi|352682237|ref|YP_004892761.1| - 0.004 16.4 67.4 0.11 11.7 10.4 5.1 1 1 4 5 5 5 3 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|352682237|ref|YP_004892761.1| - 0.0057 14.5 35.3 0.17 9.7 15.7 3.1 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family ACR_tran PF00873.14 gi|352682237|ref|YP_004892761.1| - 0.0067 13.9 3.1 0.013 12.9 2.1 1.4 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Spc7 PF08317.6 gi|352682237|ref|YP_004892761.1| - 0.067 11.8 55.7 0.11 11.1 3.6 4.3 2 1 3 5 5 5 0 Spc7 kinetochore protein WXG100 PF06013.7 gi|352682237|ref|YP_004892761.1| - 0.069 13.1 22.9 18 5.4 1.0 7.5 4 3 0 6 6 6 0 Proteins of 100 residues with WXG DUF2125 PF09898.4 gi|352682237|ref|YP_004892761.1| - 0.09 12.0 10.1 0.094 12.0 0.1 3.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2125) LXG PF04740.7 gi|352682237|ref|YP_004892761.1| - 0.091 12.5 23.1 1.7 8.4 3.5 4.0 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF4200 PF13863.1 gi|352682237|ref|YP_004892761.1| - 0.25 11.2 64.9 0.15 12.0 2.6 4.7 3 1 2 5 5 4 0 Domain of unknown function (DUF4200) Mod_r PF07200.8 gi|352682237|ref|YP_004892761.1| - 0.44 10.4 49.8 0.25 11.2 4.1 4.9 1 1 4 5 5 5 0 Modifier of rudimentary (Mod(r)) protein Laminin_II PF06009.7 gi|352682237|ref|YP_004892761.1| - 0.6 9.8 36.5 0.21 11.3 5.5 5.3 1 1 3 5 5 5 0 Laminin Domain II GAS PF13851.1 gi|352682237|ref|YP_004892761.1| - 0.97 8.5 51.6 3.9 6.6 4.7 4.5 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding VP4_haemagglut PF00426.13 gi|352682237|ref|YP_004892761.1| - 1.1 7.1 5.7 1.8 6.4 3.9 1.3 1 0 0 1 1 1 0 Outer Capsid protein VP4 (Hemagglutinin) Retrotrans_gag PF03732.12 gi|352682237|ref|YP_004892761.1| - 1.2 9.2 0.0 1.2 9.2 0.0 3.9 1 1 1 3 3 3 0 Retrotransposon gag protein DUF3407 PF11887.3 gi|352682237|ref|YP_004892761.1| - 1.3 8.2 5.6 4 6.6 1.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) NAAA-beta PF15508.1 gi|352682237|ref|YP_004892761.1| - 1.8 8.9 4.5 46 4.4 0.2 4.3 2 1 3 6 6 6 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase PilJ PF13675.1 gi|352682237|ref|YP_004892761.1| - 2.1 8.7 28.9 21 5.4 5.9 5.0 1 1 4 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spectrin PF00435.16 gi|352682237|ref|YP_004892761.1| - 2.2 8.6 39.8 1.1 9.5 4.8 5.8 1 1 6 7 7 7 0 Spectrin repeat DUF3584 PF12128.3 gi|352682237|ref|YP_004892761.1| - 2.6 5.2 48.8 0.01 13.2 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) OmpH PF03938.9 gi|352682237|ref|YP_004892761.1| - 3 7.7 50.1 0.048 13.5 7.1 4.0 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) SAP PF02037.22 gi|352682237|ref|YP_004892761.1| - 4.3 6.9 12.5 1 8.9 0.3 5.0 4 1 0 4 4 4 0 SAP domain DUF812 PF05667.6 gi|352682237|ref|YP_004892761.1| - 4.8 5.5 43.9 0.51 8.7 25.2 2.5 1 1 1 3 3 3 0 Protein of unknown function (DUF812) BLOC1_2 PF10046.4 gi|352682237|ref|YP_004892761.1| - 5.6 7.1 38.1 7.6 6.7 0.8 6.6 2 1 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_27 PF13514.1 gi|352682237|ref|YP_004892761.1| - 6.5 4.2 60.6 0.28 8.8 10.1 2.3 1 1 1 2 2 2 0 AAA domain Seryl_tRNA_N PF02403.17 gi|352682237|ref|YP_004892761.1| - 6.8 6.7 51.8 0.79 9.7 10.6 5.9 2 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain IncA PF04156.9 gi|352682238|ref|YP_004892762.1| - 0.0004 20.0 6.6 0.00053 19.6 4.6 1.1 1 0 0 1 1 1 1 IncA protein ADIP PF11559.3 gi|352682238|ref|YP_004892762.1| - 0.0023 17.8 0.5 0.0029 17.5 0.3 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.7 gi|352682238|ref|YP_004892762.1| - 0.0079 16.4 2.3 0.18 12.0 0.1 2.7 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|352682238|ref|YP_004892762.1| - 0.01 15.6 0.7 0.024 14.4 0.5 1.7 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_27 PF13514.1 gi|352682238|ref|YP_004892762.1| - 0.014 13.1 5.2 0.018 12.7 3.6 1.2 1 0 0 1 1 1 0 AAA domain DUF2730 PF10805.3 gi|352682238|ref|YP_004892762.1| - 0.014 15.0 2.6 0.068 12.9 0.1 2.3 3 0 0 3 3 2 0 Protein of unknown function (DUF2730) DUF4407 PF14362.1 gi|352682238|ref|YP_004892762.1| - 0.02 13.8 2.2 0.044 12.7 1.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF948 PF06103.6 gi|352682238|ref|YP_004892762.1| - 0.022 14.5 0.3 3.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.7 gi|352682238|ref|YP_004892762.1| - 0.025 14.3 1.8 0.032 13.9 0.7 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein FliJ PF02050.11 gi|352682238|ref|YP_004892762.1| - 0.027 14.5 3.3 0.043 13.8 2.3 1.4 1 1 0 1 1 1 0 Flagellar FliJ protein Syntaxin-6_N PF09177.6 gi|352682238|ref|YP_004892762.1| - 0.03 14.7 3.2 0.41 11.0 0.1 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal MbeD_MobD PF04899.7 gi|352682238|ref|YP_004892762.1| - 0.034 14.0 4.1 0.13 12.1 0.2 2.4 2 1 0 2 2 2 0 MbeD/MobD like HAUS-augmin3 PF14932.1 gi|352682238|ref|YP_004892762.1| - 0.041 13.0 3.0 0.046 12.8 2.1 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Phage_GP20 PF06810.6 gi|352682238|ref|YP_004892762.1| - 0.045 13.1 1.5 1.3 8.4 0.4 2.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 Syntaxin PF00804.20 gi|352682238|ref|YP_004892762.1| - 0.05 13.7 0.4 0.075 13.2 0.3 1.4 1 1 0 1 1 1 0 Syntaxin PilJ PF13675.1 gi|352682238|ref|YP_004892762.1| - 0.054 13.8 1.7 0.29 11.4 0.3 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term ALIX_LYPXL_bnd PF13949.1 gi|352682238|ref|YP_004892762.1| - 0.078 11.9 4.1 0.082 11.8 1.6 1.7 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV GCIP PF13324.1 gi|352682238|ref|YP_004892762.1| - 0.085 12.0 0.2 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting AATF-Che1 PF13339.1 gi|352682238|ref|YP_004892762.1| - 0.087 12.9 3.5 1.2 9.2 0.2 2.0 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Reo_sigmaC PF04582.7 gi|352682238|ref|YP_004892762.1| - 0.088 11.9 0.2 0.13 11.4 0.1 1.4 1 1 0 1 1 1 0 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|352682238|ref|YP_004892762.1| - 0.11 10.9 0.7 0.11 10.9 0.5 1.1 1 0 0 1 1 1 0 AAA domain SNARE PF05739.14 gi|352682238|ref|YP_004892762.1| - 0.13 11.9 2.3 3 7.5 0.1 2.7 3 0 0 3 3 3 0 SNARE domain Sas10_Utp3 PF04000.10 gi|352682238|ref|YP_004892762.1| - 0.14 12.3 2.9 7.3 6.8 2.0 2.8 1 1 0 1 1 1 0 Sas10/Utp3/C1D family SlyX PF04102.7 gi|352682238|ref|YP_004892762.1| - 0.15 12.4 0.8 0.15 12.4 0.6 3.0 2 1 0 2 2 2 0 SlyX TSKS PF15358.1 gi|352682238|ref|YP_004892762.1| - 0.15 10.2 4.7 0.28 9.3 3.3 1.5 1 1 0 1 1 1 0 Testis-specific serine kinase substrate DivIVA PF05103.8 gi|352682238|ref|YP_004892762.1| - 0.19 11.7 5.9 0.89 9.6 0.8 2.2 1 1 1 2 2 2 0 DivIVA protein 3HCDH_N PF02737.13 gi|352682238|ref|YP_004892762.1| - 0.19 11.3 1.8 1.5 8.4 0.2 2.0 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApoLp-III PF07464.6 gi|352682238|ref|YP_004892762.1| - 0.2 11.6 2.4 0.32 11.0 0.4 2.0 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Spidroin_MaSp PF11260.3 gi|352682238|ref|YP_004892762.1| - 0.2 11.7 1.6 1.4 9.0 0.2 2.4 1 1 1 2 2 2 0 Major ampullate spidroin 1 and 2 Acyl-CoA_dh_2 PF08028.6 gi|352682238|ref|YP_004892762.1| - 0.21 11.8 1.0 0.29 11.3 0.7 1.3 1 1 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Seryl_tRNA_N PF02403.17 gi|352682238|ref|YP_004892762.1| - 0.26 11.3 3.4 0.43 10.6 0.4 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Sec2p PF06428.6 gi|352682238|ref|YP_004892762.1| - 0.32 10.8 8.2 0.7 9.7 1.8 2.2 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p CorA PF01544.13 gi|352682238|ref|YP_004892762.1| - 0.4 9.6 2.9 1.7 7.5 2.0 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Apolipoprotein PF01442.13 gi|352682238|ref|YP_004892762.1| - 0.41 10.1 8.1 0.97 8.9 5.6 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain CK2S PF15011.1 gi|352682238|ref|YP_004892762.1| - 0.43 10.3 4.5 10 5.8 1.8 2.4 1 1 0 1 1 1 0 Casein Kinase 2 substrate Lge1 PF11488.3 gi|352682238|ref|YP_004892762.1| - 0.47 10.6 3.6 0.79 9.9 1.0 2.1 1 1 1 2 2 2 0 Transcriptional regulatory protein LGE1 TMF_DNA_bd PF12329.3 gi|352682238|ref|YP_004892762.1| - 0.48 10.2 6.7 0.67 9.8 0.1 2.9 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Laminin_II PF06009.7 gi|352682238|ref|YP_004892762.1| - 0.49 10.1 5.2 1.5 8.6 3.6 1.7 1 1 0 1 1 1 0 Laminin Domain II DASH_Dad3 PF08656.5 gi|352682238|ref|YP_004892762.1| - 0.53 10.0 6.9 2.9 7.6 4.8 2.3 1 1 0 1 1 1 0 DASH complex subunit Dad3 GTPase_Cys_C PF12631.2 gi|352682238|ref|YP_004892762.1| - 0.77 10.2 5.4 1 9.8 1.0 2.2 1 1 1 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Spc7 PF08317.6 gi|352682238|ref|YP_004892762.1| - 0.84 8.2 5.5 2.1 6.9 3.8 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein TBPIP PF07106.8 gi|352682238|ref|YP_004892762.1| - 1.2 8.6 4.5 12 5.3 0.2 2.3 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FUSC PF04632.7 gi|352682238|ref|YP_004892762.1| - 1.5 7.1 4.6 1.8 6.9 3.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family FliT PF05400.8 gi|352682238|ref|YP_004892762.1| - 1.7 9.1 9.1 9.8 6.6 0.2 2.3 2 0 0 2 2 2 0 Flagellar protein FliT DUF4140 PF13600.1 gi|352682238|ref|YP_004892762.1| - 1.8 9.0 8.9 5.1 7.5 0.8 2.5 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4200 PF13863.1 gi|352682238|ref|YP_004892762.1| - 2.2 8.2 9.5 3.6 7.5 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) APG6 PF04111.7 gi|352682238|ref|YP_004892762.1| - 2.3 7.2 7.2 16 4.4 5.0 1.9 1 1 0 1 1 1 0 Autophagy protein Apg6 PEP-utilisers_N PF05524.8 gi|352682238|ref|YP_004892762.1| - 2.9 7.7 9.4 8.8 6.1 0.1 2.9 1 1 2 3 3 3 0 PEP-utilising enzyme, N-terminal Flg_hook PF02120.11 gi|352682238|ref|YP_004892762.1| - 3.9 7.2 5.4 0.58 9.8 0.3 2.1 2 1 0 2 2 2 0 Flagellar hook-length control protein FliK Hexapep PF00132.19 gi|352682239|ref|YP_004892763.1| - 3.1e-26 89.6 34.8 2.7e-08 32.9 0.7 5.6 4 1 0 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|352682239|ref|YP_004892763.1| - 1.5e-16 59.6 25.7 3.9e-07 29.5 2.5 5.8 4 1 0 5 5 5 5 Hexapeptide repeat of succinyl-transferase AfaD PF05775.7 gi|352682239|ref|YP_004892763.1| - 0.086 12.8 0.1 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 Enterobacteria AfaD invasin protein AAA PF00004.24 gi|352682240|ref|YP_004892764.1| - 1.2e-99 329.6 0.0 3.7e-50 169.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|352682240|ref|YP_004892764.1| - 2.4e-31 107.5 0.6 9.6e-31 105.5 0.4 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|352682240|ref|YP_004892764.1| - 3.6e-16 58.9 0.0 3.3e-08 32.8 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|352682240|ref|YP_004892764.1| - 6.9e-15 55.3 0.0 5.7e-08 32.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|352682240|ref|YP_004892764.1| - 6.5e-14 52.2 0.2 3.8e-06 27.0 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|352682240|ref|YP_004892764.1| - 2.8e-12 47.5 0.1 7.2e-06 26.8 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|352682240|ref|YP_004892764.1| - 9.2e-12 45.3 0.0 6.8e-06 26.1 0.0 3.4 3 1 1 4 4 3 2 AAA ATPase domain AAA_14 PF13173.1 gi|352682240|ref|YP_004892764.1| - 1.2e-11 44.5 0.0 3.3e-06 27.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|352682240|ref|YP_004892764.1| - 2.3e-11 43.5 0.3 0.00042 20.0 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|352682240|ref|YP_004892764.1| - 5.8e-11 42.4 0.0 0.00016 21.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.12 gi|352682240|ref|YP_004892764.1| - 2.2e-10 40.0 0.4 5.7e-10 38.6 0.2 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 Zeta_toxin PF06414.7 gi|352682240|ref|YP_004892764.1| - 3.9e-09 35.9 0.4 0.00057 19.0 0.0 3.1 3 0 0 3 3 3 2 Zeta toxin IstB_IS21 PF01695.12 gi|352682240|ref|YP_004892764.1| - 4.2e-09 36.0 0.2 0.002 17.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein TIP49 PF06068.8 gi|352682240|ref|YP_004892764.1| - 1.8e-08 33.5 0.1 0.0027 16.4 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_18 PF13238.1 gi|352682240|ref|YP_004892764.1| - 2.4e-07 31.0 0.1 0.0069 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|352682240|ref|YP_004892764.1| - 2.8e-07 30.6 0.0 0.024 14.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.1 gi|352682240|ref|YP_004892764.1| - 3.8e-07 29.8 0.2 0.019 14.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|352682240|ref|YP_004892764.1| - 4.8e-07 29.7 0.6 0.0012 18.5 0.1 3.4 2 2 1 3 3 3 1 Archaeal ATPase AAA_28 PF13521.1 gi|352682240|ref|YP_004892764.1| - 1.4e-06 28.3 0.0 0.011 15.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|352682240|ref|YP_004892764.1| - 1.9e-06 27.6 0.6 0.005 16.6 0.0 3.7 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain NACHT PF05729.7 gi|352682240|ref|YP_004892764.1| - 2e-06 27.5 0.1 0.18 11.4 0.0 3.6 4 0 0 4 4 4 2 NACHT domain Mg_chelatase PF01078.16 gi|352682240|ref|YP_004892764.1| - 2.1e-06 27.0 0.4 0.054 12.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|352682240|ref|YP_004892764.1| - 3.7e-06 26.4 6.3 0.15 11.4 0.2 4.2 2 2 1 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|352682240|ref|YP_004892764.1| - 1.2e-05 24.8 0.0 0.18 11.2 0.0 3.4 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|352682240|ref|YP_004892764.1| - 2.8e-05 23.7 0.5 0.14 11.9 0.0 3.6 3 0 0 3 3 2 2 Part of AAA domain DUF815 PF05673.8 gi|352682240|ref|YP_004892764.1| - 5.8e-05 22.1 0.0 0.35 9.7 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_3 PF07726.6 gi|352682240|ref|YP_004892764.1| - 0.00012 21.7 0.0 0.48 10.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|352682240|ref|YP_004892764.1| - 0.00012 20.9 0.0 0.12 11.1 0.0 2.7 2 0 0 2 2 2 2 NB-ARC domain Bac_DnaA PF00308.13 gi|352682240|ref|YP_004892764.1| - 0.00013 21.6 0.0 0.026 14.1 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein KaiC PF06745.8 gi|352682240|ref|YP_004892764.1| - 0.00014 21.1 0.4 0.63 9.1 0.0 3.5 2 1 1 3 3 3 2 KaiC Sigma54_activ_2 PF14532.1 gi|352682240|ref|YP_004892764.1| - 0.00015 21.7 0.0 0.53 10.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|352682240|ref|YP_004892764.1| - 0.00016 21.3 1.5 1.3 8.6 0.0 4.0 4 1 1 5 5 3 1 NTPase Antitoxin-MazE PF04014.13 gi|352682240|ref|YP_004892764.1| - 0.00025 20.7 2.4 0.008 15.8 0.3 3.3 3 0 0 3 3 2 1 Antidote-toxin recognition MazE ABC_tran PF00005.22 gi|352682240|ref|YP_004892764.1| - 0.0008 19.7 0.0 1 9.6 0.0 2.8 2 0 0 2 2 2 1 ABC transporter SKI PF01202.17 gi|352682240|ref|YP_004892764.1| - 0.0012 18.6 0.6 1.5 8.7 0.0 3.2 4 0 0 4 4 3 1 Shikimate kinase UPF0079 PF02367.12 gi|352682240|ref|YP_004892764.1| - 0.0037 16.8 0.0 1.9 8.1 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|352682240|ref|YP_004892764.1| - 0.004 16.6 0.1 3.3 7.1 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Guanylate_kin PF00625.16 gi|352682240|ref|YP_004892764.1| - 0.005 16.2 0.1 28 4.1 0.0 3.7 3 1 1 4 4 4 0 Guanylate kinase KAP_NTPase PF07693.9 gi|352682240|ref|YP_004892764.1| - 0.006 15.6 0.2 6.4 5.6 0.0 3.4 2 2 2 4 4 4 0 KAP family P-loop domain AFG1_ATPase PF03969.11 gi|352682240|ref|YP_004892764.1| - 0.0064 15.3 0.0 2.8 6.6 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase UFD1 PF03152.9 gi|352682240|ref|YP_004892764.1| - 0.014 14.5 0.0 0.39 9.8 0.0 2.4 1 1 1 2 2 2 0 Ubiquitin fusion degradation protein UFD1 AAA_10 PF12846.2 gi|352682240|ref|YP_004892764.1| - 0.017 14.5 0.5 7.2 5.9 0.0 3.1 2 1 1 3 3 3 0 AAA-like domain Parvo_NS1 PF01057.12 gi|352682240|ref|YP_004892764.1| - 0.024 13.5 0.1 2.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 ResIII PF04851.10 gi|352682240|ref|YP_004892764.1| - 0.038 13.8 0.0 6.9 6.4 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|352682240|ref|YP_004892764.1| - 0.04 13.1 0.5 5.8 6.0 0.0 2.9 3 0 0 3 3 2 0 PhoH-like protein IPT PF01745.11 gi|352682240|ref|YP_004892764.1| - 0.053 12.6 0.2 2.4 7.2 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase Viral_helicase1 PF01443.13 gi|352682240|ref|YP_004892764.1| - 0.071 12.6 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.18 gi|352682240|ref|YP_004892764.1| - 0.1 12.5 0.1 12 5.9 0.0 3.2 3 1 0 3 3 3 0 50S ribosome-binding GTPase KTI12 PF08433.5 gi|352682240|ref|YP_004892764.1| - 0.14 11.2 0.0 18 4.3 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_23 PF13476.1 gi|352682240|ref|YP_004892764.1| - 0.22 11.8 0.0 15 5.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain HSP20 PF00011.16 gi|352682241|ref|YP_004892765.1| - 1.2e-11 44.3 0.9 2.9e-10 39.9 0.7 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|352682241|ref|YP_004892765.1| - 3.9e-05 23.3 0.0 4.6e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|352682241|ref|YP_004892765.1| - 0.0008 19.9 0.0 0.0013 19.2 0.0 1.3 1 0 0 1 1 1 1 CS domain Peptidase_M42 PF05343.9 gi|352682242|ref|YP_004892766.1| - 8.9e-66 221.6 0.0 1.1e-65 221.3 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|352682242|ref|YP_004892766.1| - 2.6e-10 40.1 0.0 4.1e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|352682242|ref|YP_004892766.1| - 3.2e-05 22.6 0.0 0.00097 17.7 0.0 2.2 2 1 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|352682242|ref|YP_004892766.1| - 0.001 18.8 0.0 0.011 15.4 0.0 2.2 2 1 0 2 2 2 1 Peptidase family M28 Fe_dep_repress PF01325.14 gi|352682242|ref|YP_004892766.1| - 0.16 11.8 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PNP_UDP_1 PF01048.15 gi|352682243|ref|YP_004892767.1| - 3.2e-37 127.7 0.5 3.9e-37 127.4 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily OrfB_Zn_ribbon PF07282.6 gi|352682244|ref|YP_004892768.1| - 0.0049 16.4 0.4 0.13 11.9 0.4 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain HJURP_C PF12347.3 gi|352682244|ref|YP_004892768.1| - 0.14 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat zinc_ribbon_4 PF13717.1 gi|352682244|ref|YP_004892768.1| - 0.16 11.6 1.2 0.35 10.6 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|352682244|ref|YP_004892768.1| - 0.23 11.0 1.4 0.37 10.4 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DUF340 PF03956.8 gi|352682245|ref|YP_004892769.1| - 1.2e-41 142.1 9.1 1.2e-41 142.1 6.3 2.0 2 0 0 2 2 2 1 Membrane protein of unknown function (DUF340) Flavoprotein PF02441.14 gi|352682246|ref|YP_004892770.1| - 6.9e-30 103.3 0.0 1.1e-29 102.7 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein RHH_1 PF01402.16 gi|352682247|ref|YP_004892771.1| - 5.4e-07 29.2 0.8 7.5e-07 28.7 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|352682247|ref|YP_004892771.1| - 0.01 15.6 0.1 0.017 14.9 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF3912 PF13051.1 gi|352682247|ref|YP_004892771.1| - 0.1 12.3 0.1 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3912) SIS PF01380.17 gi|352682248|ref|YP_004892772.1| - 1e-14 54.2 0.0 1.7e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|352682248|ref|YP_004892772.1| - 1.2e-14 54.2 1.9 1.7e-08 34.2 0.6 2.3 1 1 1 2 2 2 2 SIS domain AlaDh_PNT_C PF01262.16 gi|352682248|ref|YP_004892772.1| - 0.13 11.8 1.8 0.65 9.5 0.3 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoMet_dc PF02675.10 gi|352682249|ref|YP_004892773.1| - 3.5e-35 120.1 0.0 3.9e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase M20_dimer PF07687.9 gi|352682249|ref|YP_004892773.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase dimerisation domain OrfB_Zn_ribbon PF07282.6 gi|352682251|ref|YP_004892775.1| - 1.1e-11 44.2 0.0 2.1e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|352682251|ref|YP_004892775.1| - 0.0014 18.3 2.8 0.0027 17.4 1.9 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|352682251|ref|YP_004892775.1| - 0.0024 17.5 0.8 0.0036 16.9 0.5 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF1272 PF06906.6 gi|352682251|ref|YP_004892775.1| - 0.005 16.6 0.4 0.055 13.3 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1272) zf-TFIIB PF13453.1 gi|352682251|ref|YP_004892775.1| - 0.014 14.6 0.5 3.5 6.8 0.0 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger DZR PF12773.2 gi|352682251|ref|YP_004892775.1| - 0.015 15.0 0.2 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|352682251|ref|YP_004892775.1| - 0.028 14.2 0.3 0.043 13.5 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF1667 PF07892.6 gi|352682251|ref|YP_004892775.1| - 0.042 13.5 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) HypA PF01155.14 gi|352682251|ref|YP_004892775.1| - 0.078 12.6 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|352682251|ref|YP_004892775.1| - 0.33 10.4 2.1 8 6.0 0.1 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-FPG_IleRS PF06827.9 gi|352682251|ref|YP_004892775.1| - 0.38 10.4 3.1 0.79 9.4 2.2 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-IS66 PF13005.2 gi|352682251|ref|YP_004892775.1| - 0.79 9.7 4.1 1.1 9.3 1.1 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|352682251|ref|YP_004892775.1| - 6.2 6.8 6.1 7.6 6.5 0.2 2.7 2 1 1 3 3 3 0 Zinc ribbon domain KaiC PF06745.8 gi|352682252|ref|YP_004892776.1| - 2.8e-14 52.8 0.0 3.9e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|352682252|ref|YP_004892776.1| - 3.8e-08 32.9 1.0 1.1e-07 31.4 0.1 2.1 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|352682252|ref|YP_004892776.1| - 0.00046 19.6 0.1 0.0028 17.0 0.0 2.1 1 1 0 2 2 2 1 IstB-like ATP binding protein Elong_Iki1 PF10483.4 gi|352682252|ref|YP_004892776.1| - 0.0011 18.3 0.0 0.0013 18.1 0.0 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 AAA_22 PF13401.1 gi|352682252|ref|YP_004892776.1| - 0.007 16.5 0.2 0.12 12.4 0.1 2.9 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|352682252|ref|YP_004892776.1| - 0.0089 15.6 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|352682252|ref|YP_004892776.1| - 0.035 14.0 0.8 1.3 8.9 0.6 2.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|352682252|ref|YP_004892776.1| - 0.042 14.1 0.5 0.36 11.1 0.2 2.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|352682252|ref|YP_004892776.1| - 0.064 13.4 0.0 0.15 12.2 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zot PF05707.7 gi|352682252|ref|YP_004892776.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Sigma54_activat PF00158.21 gi|352682252|ref|YP_004892776.1| - 0.13 11.6 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Radical_SAM PF04055.16 gi|352682253|ref|YP_004892777.1| - 9.5e-14 51.9 0.0 5.7e-13 49.3 0.0 2.0 2 1 1 3 3 3 1 Radical SAM superfamily DUF1848 PF08902.6 gi|352682253|ref|YP_004892777.1| - 4e-07 29.8 1.7 0.009 15.5 0.0 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) DUF2249 PF10006.4 gi|352682253|ref|YP_004892777.1| - 0.019 14.5 0.0 2.1 7.9 0.0 2.9 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2249) SNARE_assoc PF09335.6 gi|352682255|ref|YP_004892779.1| - 2.2e-05 24.6 1.4 0.00012 22.3 0.1 2.3 1 1 1 2 2 2 1 SNARE associated Golgi protein ATG22 PF11700.3 gi|352682255|ref|YP_004892779.1| - 0.0052 15.3 0.0 0.01 14.3 0.0 1.4 1 0 0 1 1 1 1 Vacuole effluxer Atg22 like tRNA-synt_1 PF00133.17 gi|352682256|ref|YP_004892780.1| - 5.9e-61 206.2 0.0 9.3e-51 172.5 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|352682256|ref|YP_004892780.1| - 1.6e-29 102.7 0.5 5.4e-13 48.3 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|352682256|ref|YP_004892780.1| - 2.2e-15 56.7 0.3 5.4e-15 55.4 0.2 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|352682256|ref|YP_004892780.1| - 2.6e-12 46.4 0.0 9.2e-12 44.6 0.0 1.8 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|352682256|ref|YP_004892780.1| - 1.2e-11 44.2 0.0 2.7e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|352682256|ref|YP_004892780.1| - 0.0095 14.7 0.1 0.016 14.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|352682256|ref|YP_004892780.1| - 0.12 10.9 0.0 12 4.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) TatC PF00902.13 gi|352682257|ref|YP_004892781.1| - 8e-35 120.1 24.4 1e-34 119.8 16.9 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Herpes_LMP1 PF05297.6 gi|352682258|ref|YP_004892782.1| - 0.53 9.1 2.3 0.58 9.0 1.6 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) FA_desaturase PF00487.19 gi|352682258|ref|YP_004892782.1| - 0.66 9.3 3.4 0.71 9.2 2.3 1.0 1 0 0 1 1 1 0 Fatty acid desaturase ABC2_membrane PF01061.19 gi|352682259|ref|YP_004892783.1| - 3.1e-32 111.4 18.2 3.1e-32 111.4 12.6 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|352682259|ref|YP_004892783.1| - 6.5e-14 51.7 14.4 6.5e-14 51.7 10.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|352682259|ref|YP_004892783.1| - 2.7e-08 33.2 14.0 3.3e-08 32.9 9.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|352682259|ref|YP_004892783.1| - 1.5e-06 27.3 12.2 2.2e-06 26.7 8.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein Sulfate_tra_GLY PF13792.1 gi|352682259|ref|YP_004892783.1| - 1 9.0 9.0 0.33 10.6 2.1 3.0 3 0 0 3 3 3 0 Sulfate transporter N-terminal domain with GLY motif DUF1206 PF06724.6 gi|352682259|ref|YP_004892783.1| - 8 6.2 11.6 0.44 10.3 2.2 2.7 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1206) ABC_tran PF00005.22 gi|352682260|ref|YP_004892784.1| - 1.3e-29 103.2 0.0 1.8e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352682260|ref|YP_004892784.1| - 7.8e-15 55.5 0.7 2.7e-12 47.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|352682260|ref|YP_004892784.1| - 8e-07 29.4 0.0 3e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|352682260|ref|YP_004892784.1| - 2.6e-05 23.4 0.0 0.005 15.9 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|352682260|ref|YP_004892784.1| - 0.014 14.9 0.4 0.027 13.9 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|352682260|ref|YP_004892784.1| - 0.017 15.4 0.0 0.023 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|352682260|ref|YP_004892784.1| - 0.027 14.6 0.5 0.36 11.0 0.3 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|352682260|ref|YP_004892784.1| - 0.055 12.6 0.0 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|352682260|ref|YP_004892784.1| - 0.094 12.1 0.1 7.4 5.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|352682260|ref|YP_004892784.1| - 0.094 12.8 0.3 0.51 10.4 0.2 2.2 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|352682260|ref|YP_004892784.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Cation_efflux PF01545.16 gi|352682261|ref|YP_004892785.1| - 2.7e-46 157.9 1.3 3.3e-46 157.6 0.9 1.0 1 0 0 1 1 1 1 Cation efflux family Ni_hydr_CYTB PF01292.15 gi|352682261|ref|YP_004892785.1| - 0.12 11.7 1.7 0.93 8.8 0.8 2.1 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 TPR_16 PF13432.1 gi|352682262|ref|YP_004892786.1| - 0.0078 16.8 0.7 0.0078 16.8 0.5 3.0 4 0 0 4 4 4 1 Tetratricopeptide repeat MFS_1 PF07690.11 gi|352682263|ref|YP_004892787.1| - 1.4e-33 116.1 62.7 1e-20 73.7 19.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|352682263|ref|YP_004892787.1| - 4.7e-05 23.1 2.6 0.015 15.0 0.1 3.4 3 1 0 3 3 3 2 MFS_1 like family MFS_2 PF13347.1 gi|352682263|ref|YP_004892787.1| - 0.16 10.2 28.6 1.1 7.5 19.9 2.4 1 1 0 1 1 1 0 MFS/sugar transport protein Class_IIIsignal PF04021.7 gi|352682264|ref|YP_004892788.1| - 5.3e-05 22.7 4.1 0.00012 21.6 2.9 1.6 1 0 0 1 1 1 1 Class III signal peptide tRNA_anti-like PF12869.2 gi|352682264|ref|YP_004892788.1| - 0.022 14.2 0.3 0.029 13.8 0.2 1.2 1 0 0 1 1 1 0 tRNA_anti-like Bundlin PF05307.6 gi|352682264|ref|YP_004892788.1| - 0.086 12.7 1.0 0.12 12.2 0.7 1.3 1 0 0 1 1 1 0 Bundlin FeoB_C PF07664.7 gi|352682264|ref|YP_004892788.1| - 0.17 11.3 2.6 0.28 10.6 1.2 1.8 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus KaiC PF06745.8 gi|352682265|ref|YP_004892789.1| - 3.4e-14 52.5 0.0 6.9e-13 48.2 0.0 2.2 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|352682265|ref|YP_004892789.1| - 3.6e-07 29.7 0.0 9.1e-07 28.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352682265|ref|YP_004892789.1| - 4.2e-07 29.6 0.4 2.4e-06 27.2 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain IstB_IS21 PF01695.12 gi|352682265|ref|YP_004892789.1| - 5.9e-07 29.0 0.1 7.5e-05 22.2 0.0 2.7 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|352682265|ref|YP_004892789.1| - 6.4e-07 29.4 0.0 0.0011 18.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|352682265|ref|YP_004892789.1| - 1.4e-05 25.2 0.0 0.0004 20.5 0.0 2.5 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|352682265|ref|YP_004892789.1| - 4.4e-05 23.5 0.2 0.00011 22.3 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|352682265|ref|YP_004892789.1| - 4.6e-05 23.5 0.0 0.00012 22.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|352682265|ref|YP_004892789.1| - 0.00042 20.0 0.0 0.0011 18.6 0.0 1.7 1 1 0 1 1 1 1 NACHT domain AAA_24 PF13479.1 gi|352682265|ref|YP_004892789.1| - 0.00049 19.7 1.1 0.0039 16.7 0.8 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352682265|ref|YP_004892789.1| - 0.00056 20.7 0.1 0.0018 19.0 0.0 1.9 2 0 0 2 2 1 1 AAA domain NB-ARC PF00931.17 gi|352682265|ref|YP_004892789.1| - 0.00095 18.1 0.0 0.0022 16.8 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_30 PF13604.1 gi|352682265|ref|YP_004892789.1| - 0.0048 16.5 0.0 0.014 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|352682265|ref|YP_004892789.1| - 0.0056 16.1 0.0 0.0095 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain AAA_14 PF13173.1 gi|352682265|ref|YP_004892789.1| - 0.0057 16.5 0.0 0.018 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|352682265|ref|YP_004892789.1| - 0.0081 16.4 0.0 0.081 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|352682265|ref|YP_004892789.1| - 0.0092 14.9 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) CobA_CobO_BtuR PF02572.10 gi|352682265|ref|YP_004892789.1| - 0.0097 15.5 0.0 0.052 13.1 0.0 2.0 2 0 0 2 2 2 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP GvpD PF07088.6 gi|352682265|ref|YP_004892789.1| - 0.015 13.6 0.0 0.23 9.7 0.0 2.0 2 0 0 2 2 2 0 GvpD gas vesicle protein MobB PF03205.9 gi|352682265|ref|YP_004892789.1| - 0.026 14.2 0.0 0.061 13.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|352682265|ref|YP_004892789.1| - 0.036 13.5 0.5 0.14 11.5 0.0 2.1 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|352682265|ref|YP_004892789.1| - 0.037 13.2 0.1 0.066 12.4 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein RuvB_N PF05496.7 gi|352682265|ref|YP_004892789.1| - 0.039 13.0 0.7 0.46 9.4 0.0 2.5 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus ABC_tran PF00005.22 gi|352682265|ref|YP_004892789.1| - 0.045 14.0 0.0 0.087 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter CbiA PF01656.18 gi|352682265|ref|YP_004892789.1| - 0.11 11.8 0.1 0.22 10.9 0.1 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.17 gi|352682265|ref|YP_004892789.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|352682265|ref|YP_004892789.1| - 0.12 12.6 0.2 0.19 12.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|352682265|ref|YP_004892789.1| - 0.13 11.8 0.0 0.42 10.2 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|352682265|ref|YP_004892789.1| - 0.16 11.8 0.1 0.36 10.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain UPF0020 PF01170.13 gi|352682266|ref|YP_004892790.1| - 1.8e-23 83.0 0.0 2.8e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|352682266|ref|YP_004892790.1| - 2.5e-13 50.0 0.2 4.4e-13 49.2 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|352682266|ref|YP_004892790.1| - 1.3e-10 41.3 0.0 2.1e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 THUMP domain MTS PF05175.9 gi|352682266|ref|YP_004892790.1| - 2e-08 33.7 0.0 3.1e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|352682266|ref|YP_004892790.1| - 3.3e-06 26.7 0.0 8.3e-06 25.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|352682266|ref|YP_004892790.1| - 0.00018 20.7 0.0 0.00026 20.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|352682266|ref|YP_004892790.1| - 0.00029 21.1 0.0 0.00057 20.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352682266|ref|YP_004892790.1| - 0.00096 18.9 0.0 0.01 15.5 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|352682266|ref|YP_004892790.1| - 0.0015 17.9 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|352682266|ref|YP_004892790.1| - 0.0021 18.6 0.0 0.0035 17.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|352682266|ref|YP_004892790.1| - 0.022 13.9 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|352682266|ref|YP_004892790.1| - 0.053 14.0 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|352682266|ref|YP_004892790.1| - 0.099 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2835 PF11197.3 gi|352682266|ref|YP_004892790.1| - 0.12 12.1 0.0 0.53 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2835) Methyltransf_4 PF02390.12 gi|352682266|ref|YP_004892790.1| - 0.19 10.7 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF401 PF04165.7 gi|352682267|ref|YP_004892791.1| - 1.3e-62 212.0 13.5 1.6e-62 211.7 9.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) T2SE PF00437.15 gi|352682268|ref|YP_004892792.1| - 1e-14 54.1 0.0 1.7e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|352682268|ref|YP_004892792.1| - 2.4e-07 31.5 0.0 1.7e-06 28.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|352682268|ref|YP_004892792.1| - 3.4e-05 24.1 0.0 0.0001 22.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352682268|ref|YP_004892792.1| - 0.00015 21.4 0.0 0.00055 19.6 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|352682268|ref|YP_004892792.1| - 0.00018 21.3 0.0 0.00037 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352682268|ref|YP_004892792.1| - 0.00027 21.0 0.0 0.002 18.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|352682268|ref|YP_004892792.1| - 0.00028 20.7 0.0 0.0092 15.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|352682268|ref|YP_004892792.1| - 0.00038 20.4 0.1 0.0013 18.7 0.0 1.9 3 0 0 3 3 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|352682268|ref|YP_004892792.1| - 0.00078 19.4 0.0 0.0016 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|352682268|ref|YP_004892792.1| - 0.0015 18.7 0.0 0.003 17.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|352682268|ref|YP_004892792.1| - 0.0016 17.8 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|352682268|ref|YP_004892792.1| - 0.0032 16.9 0.3 0.016 14.6 0.1 2.3 2 1 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|352682268|ref|YP_004892792.1| - 0.004 16.7 0.0 0.0083 15.6 0.0 1.5 2 0 0 2 2 1 1 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|352682268|ref|YP_004892792.1| - 0.0047 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|352682268|ref|YP_004892792.1| - 0.0049 16.3 0.0 0.012 15.0 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain RuvB_N PF05496.7 gi|352682268|ref|YP_004892792.1| - 0.0055 15.7 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Thymidylate_kin PF02223.12 gi|352682268|ref|YP_004892792.1| - 0.0076 15.6 0.0 0.018 14.4 0.0 1.6 1 1 0 1 1 1 1 Thymidylate kinase AAA_30 PF13604.1 gi|352682268|ref|YP_004892792.1| - 0.0083 15.7 0.2 0.02 14.4 0.0 2.0 2 1 0 2 2 1 1 AAA domain UPF0079 PF02367.12 gi|352682268|ref|YP_004892792.1| - 0.011 15.4 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|352682268|ref|YP_004892792.1| - 0.012 15.3 0.0 0.053 13.2 0.0 2.0 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|352682268|ref|YP_004892792.1| - 0.013 15.7 0.0 0.03 14.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.7 gi|352682268|ref|YP_004892792.1| - 0.014 14.5 0.0 0.029 13.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.5 gi|352682268|ref|YP_004892792.1| - 0.017 14.3 0.0 0.073 12.2 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Sigma54_activ_2 PF14532.1 gi|352682268|ref|YP_004892792.1| - 0.019 15.0 0.0 0.065 13.2 0.0 1.9 2 0 0 2 2 1 0 Sigma-54 interaction domain SRP54 PF00448.17 gi|352682268|ref|YP_004892792.1| - 0.032 13.6 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|352682268|ref|YP_004892792.1| - 0.039 13.4 0.0 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|352682268|ref|YP_004892792.1| - 0.042 14.0 0.0 0.1 12.7 0.0 1.7 2 0 0 2 2 1 0 RNA helicase AAA_23 PF13476.1 gi|352682268|ref|YP_004892792.1| - 0.044 14.0 0.0 0.078 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|352682268|ref|YP_004892792.1| - 0.045 13.3 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|352682268|ref|YP_004892792.1| - 0.046 12.4 0.0 0.092 11.5 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Viral_helicase1 PF01443.13 gi|352682268|ref|YP_004892792.1| - 0.05 13.1 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KaiC PF06745.8 gi|352682268|ref|YP_004892792.1| - 0.054 12.6 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 KaiC PhoH PF02562.11 gi|352682268|ref|YP_004892792.1| - 0.078 12.2 0.0 0.94 8.6 0.0 2.4 2 1 1 3 3 3 0 PhoH-like protein Mg_chelatase PF01078.16 gi|352682268|ref|YP_004892792.1| - 0.1 11.7 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|352682268|ref|YP_004892792.1| - 0.23 10.1 0.0 0.37 9.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein KaiC PF06745.8 gi|352682269|ref|YP_004892793.1| - 1.1e-69 234.0 0.0 1.2e-69 233.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|352682269|ref|YP_004892793.1| - 7.6e-08 31.9 0.0 1.3e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|352682269|ref|YP_004892793.1| - 0.00024 19.5 0.1 0.15 10.3 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.10 gi|352682269|ref|YP_004892793.1| - 0.018 13.9 0.0 0.025 13.4 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Rad51 PF08423.6 gi|352682269|ref|YP_004892793.1| - 0.11 11.3 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Rad51 KaiC PF06745.8 gi|352682270|ref|YP_004892794.1| - 7.3e-14 51.4 0.2 2.1e-12 46.6 0.0 2.7 2 1 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|352682270|ref|YP_004892794.1| - 4.2e-09 36.0 0.5 0.00038 19.9 0.1 3.2 2 1 0 2 2 2 2 AAA domain AAA PF00004.24 gi|352682270|ref|YP_004892794.1| - 1.6e-06 28.3 0.0 3.1e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|352682270|ref|YP_004892794.1| - 2.6e-06 27.6 0.0 9.7e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352682270|ref|YP_004892794.1| - 2.3e-05 24.0 0.0 6e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|352682270|ref|YP_004892794.1| - 4.7e-05 24.1 0.0 0.00029 21.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|352682270|ref|YP_004892794.1| - 0.00018 20.0 0.0 0.0059 14.9 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein AAA_5 PF07728.9 gi|352682270|ref|YP_004892794.1| - 0.0002 21.0 0.0 0.00062 19.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|352682270|ref|YP_004892794.1| - 0.00021 20.9 0.0 0.00058 19.5 0.0 1.7 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|352682270|ref|YP_004892794.1| - 0.0018 18.2 0.0 0.004 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|352682270|ref|YP_004892794.1| - 0.0038 17.5 0.0 0.016 15.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|352682270|ref|YP_004892794.1| - 0.004 16.7 0.0 0.006 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|352682270|ref|YP_004892794.1| - 0.0056 16.3 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|352682270|ref|YP_004892794.1| - 0.0064 16.3 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|352682270|ref|YP_004892794.1| - 0.024 13.3 0.0 0.039 12.6 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus IstB_IS21 PF01695.12 gi|352682270|ref|YP_004892794.1| - 0.036 13.4 0.0 0.11 11.8 0.0 1.8 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF2075 PF09848.4 gi|352682270|ref|YP_004892794.1| - 0.038 12.9 0.0 0.055 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.1 gi|352682270|ref|YP_004892794.1| - 0.047 14.0 0.1 0.1 12.9 0.1 1.5 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.7 gi|352682270|ref|YP_004892794.1| - 0.05 12.6 0.0 0.086 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin RuvB_N PF05496.7 gi|352682270|ref|YP_004892794.1| - 0.064 12.2 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|352682270|ref|YP_004892794.1| - 0.064 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|352682270|ref|YP_004892794.1| - 0.075 13.2 0.0 0.2 11.8 0.0 1.7 2 0 0 2 2 1 0 RNA helicase MobB PF03205.9 gi|352682270|ref|YP_004892794.1| - 0.15 11.8 0.3 2.3 7.8 0.0 2.6 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Methyltransf_23 PF13489.1 gi|352682271|ref|YP_004892795.1| - 1.4e-15 57.3 0.0 1.8e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352682271|ref|YP_004892795.1| - 1.5e-14 54.2 0.0 5.4e-14 52.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352682271|ref|YP_004892795.1| - 5.8e-09 36.3 0.0 1.4e-08 35.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352682271|ref|YP_004892795.1| - 1.7e-06 28.5 0.0 4.1e-06 27.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352682271|ref|YP_004892795.1| - 2.9e-05 23.7 0.0 5.7e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352682271|ref|YP_004892795.1| - 3e-05 24.3 0.0 4.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|352682271|ref|YP_004892795.1| - 0.00013 21.9 0.4 0.0006 19.8 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|352682271|ref|YP_004892795.1| - 0.00057 19.3 0.0 0.00072 18.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.13 gi|352682271|ref|YP_004892795.1| - 0.00094 18.3 0.0 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|352682271|ref|YP_004892795.1| - 0.07 12.1 0.0 0.096 11.7 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Acylphosphatase PF00708.13 gi|352682272|ref|YP_004892796.1| - 1.8e-24 85.6 0.0 2e-24 85.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase ABC_tran PF00005.22 gi|352682273|ref|YP_004892797.1| - 1.3e-32 112.9 0.0 2e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352682273|ref|YP_004892797.1| - 6e-09 36.2 0.0 6e-06 26.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|352682273|ref|YP_004892797.1| - 1.6e-05 24.9 1.4 0.21 11.7 0.0 3.2 2 1 0 2 2 2 2 TOBE domain TOBE_2 PF08402.5 gi|352682273|ref|YP_004892797.1| - 0.00032 20.6 0.6 0.00079 19.3 0.4 1.7 1 0 0 1 1 1 1 TOBE domain SbcCD_C PF13558.1 gi|352682273|ref|YP_004892797.1| - 0.0015 18.4 0.1 0.0075 16.1 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|352682273|ref|YP_004892797.1| - 0.0051 16.9 0.1 0.065 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|352682273|ref|YP_004892797.1| - 0.019 14.9 1.1 0.13 12.2 0.7 2.4 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|352682273|ref|YP_004892797.1| - 0.031 13.4 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|352682273|ref|YP_004892797.1| - 0.033 14.7 0.0 0.071 13.6 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_10 PF12846.2 gi|352682273|ref|YP_004892797.1| - 0.048 13.0 0.1 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|352682273|ref|YP_004892797.1| - 0.05 12.9 0.0 0.57 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|352682273|ref|YP_004892797.1| - 0.064 11.8 0.0 9.1 4.7 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|352682273|ref|YP_004892797.1| - 0.075 12.9 0.1 0.69 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|352682273|ref|YP_004892797.1| - 0.083 13.2 0.1 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|352682273|ref|YP_004892797.1| - 0.12 12.1 0.1 0.54 10.0 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|352682273|ref|YP_004892797.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|352682273|ref|YP_004892797.1| - 0.14 11.7 0.2 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.1 gi|352682273|ref|YP_004892797.1| - 0.15 11.6 0.0 0.35 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|352682273|ref|YP_004892797.1| - 0.24 10.3 0.0 0.65 8.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain Thioredoxin_2 PF13098.1 gi|352682274|ref|YP_004892798.1| - 4.1e-07 30.1 0.0 1.4e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|352682274|ref|YP_004892798.1| - 0.00091 18.8 1.2 0.14 11.7 0.2 2.4 1 1 2 3 3 3 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|352682274|ref|YP_004892798.1| - 0.0013 18.8 0.0 0.0025 17.8 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.15 gi|352682274|ref|YP_004892798.1| - 0.031 13.9 0.0 8.3 6.1 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin Pyr_redox_2 PF07992.9 gi|352682275|ref|YP_004892799.1| - 1.8e-09 37.7 0.0 2.5e-08 34.0 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|352682275|ref|YP_004892799.1| - 0.00026 21.1 0.0 0.0017 18.4 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352682275|ref|YP_004892799.1| - 0.00032 19.7 0.0 0.00054 18.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|352682275|ref|YP_004892799.1| - 0.00091 19.2 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|352682275|ref|YP_004892799.1| - 0.0014 18.4 1.2 0.017 14.8 0.1 2.7 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|352682275|ref|YP_004892799.1| - 0.0041 16.1 0.0 0.006 15.5 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|352682275|ref|YP_004892799.1| - 0.0083 15.0 0.2 0.011 14.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|352682275|ref|YP_004892799.1| - 0.025 14.9 0.1 0.067 13.6 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|352682275|ref|YP_004892799.1| - 0.035 12.5 0.0 0.056 11.9 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein ApbA PF02558.11 gi|352682275|ref|YP_004892799.1| - 0.07 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF1188 PF06690.6 gi|352682275|ref|YP_004892799.1| - 0.087 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) FtsX PF02687.16 gi|352682276|ref|YP_004892800.1| - 2.7e-16 59.4 8.8 2.7e-16 59.4 6.1 2.6 2 1 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|352682276|ref|YP_004892800.1| - 2.3e-15 56.8 8.0 5.9e-15 55.4 1.1 2.5 2 1 0 2 2 2 2 MacB-like periplasmic core domain CAAD PF14159.1 gi|352682276|ref|YP_004892800.1| - 0.093 12.3 0.1 0.093 12.3 0.1 2.8 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase FAD_binding_3 PF01494.14 gi|352682277|ref|YP_004892801.1| - 2.8e-15 56.2 0.1 5.3e-09 35.5 0.0 3.0 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.19 gi|352682277|ref|YP_004892801.1| - 4.9e-08 32.2 0.2 5.2e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|352682277|ref|YP_004892801.1| - 6.9e-07 28.6 0.1 1e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|352682277|ref|YP_004892801.1| - 1.7e-05 24.7 1.1 1.8e-05 24.7 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|352682277|ref|YP_004892801.1| - 1.8e-05 23.8 0.0 0.00065 18.7 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|352682277|ref|YP_004892801.1| - 2.5e-05 23.3 0.1 5e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|352682277|ref|YP_004892801.1| - 0.00041 18.9 0.1 0.00041 18.9 0.1 1.5 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|352682277|ref|YP_004892801.1| - 0.0011 18.8 0.0 0.0033 17.4 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|352682277|ref|YP_004892801.1| - 0.0015 18.8 0.0 0.0037 17.6 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|352682277|ref|YP_004892801.1| - 0.0021 16.9 0.2 0.0021 16.9 0.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|352682277|ref|YP_004892801.1| - 0.0036 16.0 0.0 0.15 10.6 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|352682277|ref|YP_004892801.1| - 0.046 13.7 0.0 0.081 12.9 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|352682277|ref|YP_004892801.1| - 0.057 12.5 0.0 0.1 11.6 0.0 1.5 1 0 0 1 1 1 0 Thi4 family GHMP_kinases_N PF00288.21 gi|352682278|ref|YP_004892802.1| - 0.00015 21.7 1.0 0.00028 20.9 0.7 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.6 gi|352682278|ref|YP_004892802.1| - 0.18 11.5 0.6 0.26 11.0 0.4 1.2 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus DUF137 PF02006.11 gi|352682279|ref|YP_004892803.1| - 2.7e-79 264.7 1.0 3.2e-79 264.4 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 ESX-1_EspG PF14011.1 gi|352682279|ref|YP_004892803.1| - 0.035 13.3 6.3 0.034 13.3 3.3 1.7 1 1 0 1 1 1 0 EspG family ApbA_C PF08546.6 gi|352682280|ref|YP_004892804.1| - 9.5e-38 129.0 0.0 1.3e-37 128.5 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|352682280|ref|YP_004892804.1| - 5.6e-18 64.8 0.4 1.5e-17 63.4 0.1 1.9 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|352682280|ref|YP_004892804.1| - 0.004 17.5 0.0 0.0091 16.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|352682280|ref|YP_004892804.1| - 0.012 14.5 0.7 0.063 12.1 0.1 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_2 PF03446.10 gi|352682280|ref|YP_004892804.1| - 0.051 13.4 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|352682280|ref|YP_004892804.1| - 0.091 12.4 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NicO PF03824.11 gi|352682281|ref|YP_004892805.1| - 4.9e-86 288.5 12.4 4.9e-86 288.5 8.6 1.6 2 0 0 2 2 2 1 High-affinity nickel-transport protein CbiG_N PF11760.3 gi|352682283|ref|YP_004892807.1| - 4.5e-30 103.1 0.0 1e-29 102.0 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|352682283|ref|YP_004892807.1| - 3.8e-21 75.5 0.9 3.8e-21 75.5 0.6 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus Ub-Mut7C PF14451.1 gi|352682283|ref|YP_004892807.1| - 0.11 11.9 0.2 0.45 10.0 0.0 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin TP_methylase PF00590.15 gi|352682284|ref|YP_004892808.1| - 2.8e-37 128.4 0.1 3.4e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Amidohydro_2 PF04909.9 gi|352682284|ref|YP_004892808.1| - 0.048 13.2 0.0 0.063 12.8 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase Pantoate_transf PF02548.10 gi|352682285|ref|YP_004892809.1| - 8.9e-110 365.8 0.1 1e-109 365.6 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|352682285|ref|YP_004892809.1| - 1.7e-07 30.7 3.7 3e-06 26.6 2.5 2.3 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase peroxidase PF00141.18 gi|352682285|ref|YP_004892809.1| - 0.011 15.2 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Peroxidase PA PF02225.17 gi|352682285|ref|YP_004892809.1| - 0.023 14.3 1.6 0.5 10.0 0.0 2.8 2 1 1 3 3 3 0 PA domain Robl_LC7 PF03259.12 gi|352682285|ref|YP_004892809.1| - 0.031 13.8 0.4 0.21 11.2 0.3 2.1 2 0 0 2 2 2 0 Roadblock/LC7 domain CbiC PF02570.10 gi|352682286|ref|YP_004892810.1| - 3.9e-34 117.8 0.3 8.1e-34 116.7 0.2 1.6 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiX PF01903.12 gi|352682286|ref|YP_004892810.1| - 1.4e-18 66.8 0.0 6.1e-18 64.8 0.0 2.0 2 0 0 2 2 2 1 CbiX TP_methylase PF00590.15 gi|352682287|ref|YP_004892811.1| - 2.4e-31 109.0 0.8 2.8e-31 108.8 0.5 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|352682288|ref|YP_004892812.1| - 1.7e-61 207.4 1.9 2.7e-61 206.8 1.3 1.3 1 0 0 1 1 1 1 CbiD PK_C PF02887.11 gi|352682288|ref|YP_004892812.1| - 1.8 8.1 5.9 4.7 6.8 0.3 3.1 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain Methyltransf_18 PF12847.2 gi|352682289|ref|YP_004892813.1| - 3.1e-18 66.3 0.3 4.4e-18 65.8 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352682289|ref|YP_004892813.1| - 1.2e-11 44.3 0.0 1.6e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|352682289|ref|YP_004892813.1| - 1.2e-09 38.0 0.2 1.5e-09 37.6 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|352682289|ref|YP_004892813.1| - 2e-09 37.4 0.6 8.2e-09 35.5 0.4 1.9 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|352682289|ref|YP_004892813.1| - 1.6e-08 34.0 0.2 1.9e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|352682289|ref|YP_004892813.1| - 1.8e-08 33.9 0.2 7.1e-08 32.0 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|352682289|ref|YP_004892813.1| - 4.5e-08 32.8 0.0 6.4e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|352682289|ref|YP_004892813.1| - 8e-08 32.0 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.12 gi|352682289|ref|YP_004892813.1| - 4.8e-07 29.0 0.0 5.7e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.1 gi|352682289|ref|YP_004892813.1| - 1.2e-06 28.8 0.0 1.8e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|352682289|ref|YP_004892813.1| - 5.1e-06 25.9 0.0 5.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.15 gi|352682289|ref|YP_004892813.1| - 1.1e-05 24.6 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|352682289|ref|YP_004892813.1| - 3.6e-05 24.1 0.1 7.7e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352682289|ref|YP_004892813.1| - 4.6e-05 23.1 0.0 7.5e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352682289|ref|YP_004892813.1| - 5.6e-05 23.5 0.0 0.00011 22.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|352682289|ref|YP_004892813.1| - 6e-05 23.8 0.0 0.00011 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|352682289|ref|YP_004892813.1| - 0.0001 21.9 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein N6_N4_Mtase PF01555.13 gi|352682289|ref|YP_004892813.1| - 0.0002 20.9 0.0 0.00098 18.6 0.0 1.8 2 0 0 2 2 2 1 DNA methylase FtsJ PF01728.14 gi|352682289|ref|YP_004892813.1| - 0.0013 18.7 0.0 0.55 10.1 0.0 2.0 2 0 0 2 2 2 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.13 gi|352682289|ref|YP_004892813.1| - 0.0033 16.5 0.0 0.0041 16.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|352682289|ref|YP_004892813.1| - 0.0045 16.1 0.0 0.0065 15.6 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Pterin_bind PF00809.17 gi|352682289|ref|YP_004892813.1| - 0.015 14.7 0.0 0.74 9.1 0.0 2.2 2 0 0 2 2 2 0 Pterin binding enzyme ADH_zinc_N PF00107.21 gi|352682289|ref|YP_004892813.1| - 0.019 14.5 1.4 0.033 13.7 0.9 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase NodS PF05401.6 gi|352682289|ref|YP_004892813.1| - 0.023 14.1 0.0 0.036 13.4 0.0 1.4 1 1 0 1 1 1 0 Nodulation protein S (NodS) DegV PF02645.11 gi|352682289|ref|YP_004892813.1| - 0.052 12.6 0.1 0.079 12.0 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 Methyltransf_32 PF13679.1 gi|352682289|ref|YP_004892813.1| - 0.063 12.9 0.0 0.081 12.6 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|352682289|ref|YP_004892813.1| - 0.094 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TP_methylase PF00590.15 gi|352682290|ref|YP_004892814.1| - 2.7e-29 102.4 0.6 3.5e-29 102.0 0.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_M15 PF01427.12 gi|352682290|ref|YP_004892814.1| - 0.0075 15.8 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 D-ala-D-ala dipeptidase TP_methylase PF00590.15 gi|352682291|ref|YP_004892815.1| - 7.2e-44 150.0 2.2 8.6e-44 149.7 1.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ELFV_dehydrog PF00208.16 gi|352682292|ref|YP_004892816.1| - 1.5e-66 224.4 0.1 1.9e-66 224.1 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|352682292|ref|YP_004892816.1| - 6.9e-49 164.7 0.0 1.3e-48 163.9 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Bac_GDH PF05088.7 gi|352682292|ref|YP_004892816.1| - 0.0045 14.4 0.0 0.0064 13.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|352682292|ref|YP_004892816.1| - 0.007 15.5 0.4 0.013 14.6 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|352682292|ref|YP_004892816.1| - 0.013 15.7 0.0 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|352682292|ref|YP_004892816.1| - 0.016 14.7 1.3 0.026 14.1 0.3 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Dimerisation PF08100.6 gi|352682292|ref|YP_004892816.1| - 0.044 13.6 0.0 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 Dimerisation domain Pyr_redox_2 PF07992.9 gi|352682292|ref|YP_004892816.1| - 0.077 12.8 0.1 0.15 11.8 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DEDD_Tnp_IS110 PF01548.12 gi|352682292|ref|YP_004892816.1| - 0.11 12.1 0.3 0.29 10.7 0.0 1.7 2 0 0 2 2 2 0 Transposase OrfB_Zn_ribbon PF07282.6 gi|352682293|ref|YP_004892817.1| - 9.1e-06 25.2 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NTP_transf_2 PF01909.18 gi|352682294|ref|YP_004892818.1| - 9.1e-09 35.5 0.0 1.3e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Pro_CA PF00484.14 gi|352682295|ref|YP_004892819.1| - 0.00027 20.9 0.0 0.00048 20.1 0.0 1.4 1 1 0 1 1 1 1 Carbonic anhydrase AMP-binding PF00501.23 gi|352682297|ref|YP_004892821.1| - 8.8e-90 301.0 0.0 1.2e-89 300.6 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352682297|ref|YP_004892821.1| - 1.6e-20 73.7 1.1 4.2e-20 72.4 0.8 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Aldedh PF00171.17 gi|352682298|ref|YP_004892822.1| - 4.4e-152 506.6 0.4 5.2e-152 506.4 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|352682298|ref|YP_004892822.1| - 0.00036 19.3 0.0 0.0021 16.8 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA reductase (LuxC) B12-binding PF02310.14 gi|352682298|ref|YP_004892822.1| - 0.024 14.5 1.0 0.1 12.4 0.3 2.3 2 1 0 2 2 2 0 B12 binding domain FlgN PF05130.7 gi|352682298|ref|YP_004892822.1| - 0.026 14.7 0.0 3 8.0 0.2 2.2 2 0 0 2 2 2 0 FlgN protein HpaB_N PF11794.3 gi|352682299|ref|YP_004892823.1| - 3.4e-97 324.9 0.2 5.9e-97 324.1 0.1 1.4 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|352682299|ref|YP_004892823.1| - 1.1e-63 213.8 0.0 1.7e-63 213.1 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_1 PF00441.19 gi|352682299|ref|YP_004892823.1| - 0.026 14.6 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain CBS PF00571.23 gi|352682300|ref|YP_004892824.1| - 3.1e-29 100.4 2.2 2.4e-15 56.0 0.2 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|352682300|ref|YP_004892824.1| - 0.0071 16.4 0.1 2.3 8.3 0.0 2.3 2 0 0 2 2 2 2 Ribosomal protein L9, C-terminal domain Acetyltransf_10 PF13673.1 gi|352682300|ref|YP_004892824.1| - 0.022 14.8 0.0 3.9 7.6 0.0 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain DUF218 PF02698.12 gi|352682300|ref|YP_004892824.1| - 0.065 12.7 0.4 0.11 11.9 0.3 1.3 1 1 0 1 1 1 0 DUF218 domain RibD_C PF01872.12 gi|352682300|ref|YP_004892824.1| - 0.084 12.4 0.1 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 RibD C-terminal domain FAD_binding_2 PF00890.19 gi|352682301|ref|YP_004892825.1| - 1.9e-106 356.4 1.6 2.6e-106 355.9 1.1 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|352682301|ref|YP_004892825.1| - 3.6e-34 117.3 0.0 6.3e-34 116.6 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|352682301|ref|YP_004892825.1| - 4.8e-08 33.1 0.2 0.0002 21.3 0.1 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352682301|ref|YP_004892825.1| - 9.5e-06 24.7 1.2 0.00027 19.9 0.5 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|352682301|ref|YP_004892825.1| - 0.00033 19.6 0.2 0.00056 18.9 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|352682301|ref|YP_004892825.1| - 0.0021 17.2 0.7 0.008 15.3 0.2 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|352682301|ref|YP_004892825.1| - 0.0089 14.9 1.1 0.014 14.2 0.4 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|352682301|ref|YP_004892825.1| - 0.012 14.0 0.2 0.11 10.9 0.4 2.0 2 0 0 2 2 2 0 HI0933-like protein FAD_oxidored PF12831.2 gi|352682301|ref|YP_004892825.1| - 0.015 14.4 1.1 0.025 13.6 0.7 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase YcfA PF07927.7 gi|352682301|ref|YP_004892825.1| - 0.12 12.2 0.0 0.53 10.2 0.0 2.0 2 0 0 2 2 2 0 YcfA-like protein Fer2_3 PF13085.1 gi|352682302|ref|YP_004892826.1| - 1e-26 92.9 0.1 1.1e-26 92.8 0.1 1.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.22 gi|352682302|ref|YP_004892826.1| - 1.8e-08 34.0 0.1 3e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|352682302|ref|YP_004892826.1| - 0.00025 20.7 0.0 0.00038 20.2 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|352682302|ref|YP_004892826.1| - 0.16 11.4 6.0 0.31 10.5 4.1 1.5 1 1 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ADH_zinc_N PF00107.21 gi|352682303|ref|YP_004892827.1| - 3.9e-33 113.7 5.2 7.3e-33 112.8 3.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|352682303|ref|YP_004892827.1| - 1.8e-28 98.4 0.0 1.8e-28 98.4 0.0 2.5 3 1 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|352682303|ref|YP_004892827.1| - 7.1e-12 46.3 0.6 7.1e-12 46.3 0.4 1.6 2 0 0 2 2 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|352682303|ref|YP_004892827.1| - 1.3e-07 31.8 7.5 2.8e-07 30.7 5.2 1.5 1 0 0 1 1 1 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|352682303|ref|YP_004892827.1| - 8.2e-06 25.0 0.4 2e-05 23.8 0.3 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|352682303|ref|YP_004892827.1| - 1.9e-05 24.2 2.6 3.5e-05 23.4 1.8 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.12 gi|352682303|ref|YP_004892827.1| - 0.0003 21.1 3.6 0.00068 20.0 2.5 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|352682303|ref|YP_004892827.1| - 0.00083 19.4 0.6 0.0016 18.5 0.4 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|352682303|ref|YP_004892827.1| - 0.0017 18.2 2.9 0.0017 18.2 2.0 1.7 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CPSase_L_chain PF00289.17 gi|352682303|ref|YP_004892827.1| - 0.0032 17.5 1.1 0.01 15.9 0.8 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkA_N PF02254.13 gi|352682303|ref|YP_004892827.1| - 0.0037 17.2 1.9 0.0065 16.4 1.3 1.4 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|352682303|ref|YP_004892827.1| - 0.0049 16.3 1.5 0.0086 15.5 1.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|352682303|ref|YP_004892827.1| - 0.0052 17.1 0.3 0.0078 16.5 0.2 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|352682303|ref|YP_004892827.1| - 0.013 15.2 6.9 0.036 13.7 4.6 1.9 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short_C2 PF13561.1 gi|352682303|ref|YP_004892827.1| - 0.029 14.1 0.1 0.047 13.4 0.1 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.8 gi|352682303|ref|YP_004892827.1| - 0.033 13.4 3.7 0.047 12.9 2.5 1.2 1 0 0 1 1 1 0 NmrA-like family UDPG_MGDP_dh_N PF03721.9 gi|352682303|ref|YP_004892827.1| - 0.043 13.1 0.8 0.071 12.4 0.5 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_18 PF12847.2 gi|352682303|ref|YP_004892827.1| - 0.065 13.8 0.1 0.12 12.9 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain NAD_Gly3P_dh_N PF01210.18 gi|352682303|ref|YP_004892827.1| - 0.088 12.5 1.1 0.14 11.8 0.7 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_3 PF03447.11 gi|352682303|ref|YP_004892827.1| - 0.25 11.7 4.1 0.52 10.7 2.8 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|352682303|ref|YP_004892827.1| - 0.27 11.6 3.3 0.58 10.6 2.3 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PEPcase_2 PF14010.1 gi|352682304|ref|YP_004892828.1| - 4.1e-136 454.1 0.0 4.6e-136 453.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase CBS PF00571.23 gi|352682305|ref|YP_004892829.1| - 1.2e-29 101.8 1.1 1.2e-15 56.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain DUF512 PF04459.7 gi|352682305|ref|YP_004892829.1| - 0.022 13.8 0.0 0.035 13.1 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF512) IF3_N PF05198.11 gi|352682305|ref|YP_004892829.1| - 0.025 14.5 0.5 4.2 7.3 0.1 2.5 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain CBS PF00571.23 gi|352682306|ref|YP_004892830.1| - 1.3e-28 98.4 2.0 2.1e-13 49.8 0.0 2.1 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.11 gi|352682306|ref|YP_004892830.1| - 0.073 12.2 0.0 0.16 11.1 0.0 1.6 1 1 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding Thiolase_C PF02803.13 gi|352682307|ref|YP_004892831.1| - 2.3e-09 36.7 0.0 4.5e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|352682307|ref|YP_004892831.1| - 1.6e-05 24.5 0.8 4.6e-05 23.0 0.2 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_N PF00108.18 gi|352682307|ref|YP_004892831.1| - 0.00016 20.7 3.5 0.00021 20.3 0.6 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|352682307|ref|YP_004892831.1| - 0.011 15.6 3.1 1.3 8.9 0.0 3.7 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain DUF35_N PF12172.3 gi|352682308|ref|YP_004892832.1| - 3.6e-10 39.4 3.0 5.9e-10 38.7 2.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|352682308|ref|YP_004892832.1| - 8e-10 38.8 1.2 1e-09 38.4 0.8 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|352682308|ref|YP_004892832.1| - 0.0022 17.7 0.9 0.0031 17.3 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon NMD3 PF04981.8 gi|352682308|ref|YP_004892832.1| - 0.0041 16.2 0.3 0.0053 15.9 0.2 1.1 1 0 0 1 1 1 1 NMD3 family zf-TFIIB PF13453.1 gi|352682308|ref|YP_004892832.1| - 0.025 13.7 0.2 1.1 8.5 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger Ribosomal_L32p PF01783.18 gi|352682308|ref|YP_004892832.1| - 0.073 13.2 0.1 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family Auto_anti-p27 PF06677.7 gi|352682308|ref|YP_004892832.1| - 0.16 11.7 4.2 0.41 10.4 2.9 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.6 gi|352682308|ref|YP_004892832.1| - 0.25 10.8 2.5 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|352682308|ref|YP_004892832.1| - 0.72 9.4 3.6 5.4 6.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|352682308|ref|YP_004892832.1| - 1.1 9.1 5.0 9.5 6.1 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352682308|ref|YP_004892832.1| - 2.9 7.2 7.1 32 3.8 5.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Acyl-CoA_dh_1 PF00441.19 gi|352682309|ref|YP_004892833.1| - 6.2e-35 120.5 4.4 9.9e-35 119.8 3.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|352682309|ref|YP_004892833.1| - 4.7e-20 72.2 0.2 3.1e-19 69.6 0.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|352682309|ref|YP_004892833.1| - 1.1e-14 53.6 0.2 2.3e-14 52.6 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|352682309|ref|YP_004892833.1| - 2.8e-13 50.2 3.8 5.6e-13 49.2 2.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|352682310|ref|YP_004892834.1| - 1.2e-43 148.7 0.3 2.4e-43 147.8 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|352682310|ref|YP_004892834.1| - 3.1e-28 98.6 0.1 6.6e-28 97.5 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|352682310|ref|YP_004892834.1| - 2.6e-20 71.6 0.2 6.3e-20 70.4 0.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|352682310|ref|YP_004892834.1| - 2e-15 57.2 0.6 4.6e-15 56.0 0.4 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain ATP-cone PF03477.11 gi|352682311|ref|YP_004892835.1| - 3.8e-06 27.2 0.8 1e-05 25.8 0.1 2.0 2 1 1 3 3 3 1 ATP cone domain DUF3368 PF11848.3 gi|352682311|ref|YP_004892835.1| - 0.0052 16.3 1.0 0.29 10.7 0.0 3.1 3 1 1 4 4 4 1 Domain of unknown function (DUF3368) SRP54_N PF02881.14 gi|352682311|ref|YP_004892835.1| - 0.011 15.8 5.7 0.053 13.6 0.2 2.5 3 0 0 3 3 3 0 SRP54-type protein, helical bundle domain DUF2823 PF11034.3 gi|352682311|ref|YP_004892835.1| - 0.072 13.2 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2823) PRESAN PF09687.5 gi|352682311|ref|YP_004892835.1| - 0.079 13.0 0.5 19 5.3 0.0 2.7 2 1 1 3 3 3 0 Plasmodium RESA N-terminal DUF1128 PF06569.6 gi|352682311|ref|YP_004892835.1| - 0.23 11.1 1.3 3.6 7.3 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1128) RHH_1 PF01402.16 gi|352682311|ref|YP_004892835.1| - 0.93 9.4 5.7 9.4 6.3 0.1 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family AMP-binding PF00501.23 gi|352682312|ref|YP_004892836.1| - 1e-91 307.4 0.0 1.2e-91 307.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352682312|ref|YP_004892836.1| - 6.3e-24 84.7 0.6 1.7e-23 83.3 0.2 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Defensin_2 PF01097.13 gi|352682312|ref|YP_004892836.1| - 0.22 11.2 0.1 0.36 10.5 0.1 1.3 1 0 0 1 1 1 0 Arthropod defensin 4HBT PF03061.17 gi|352682313|ref|YP_004892837.1| - 0.00013 21.9 0.0 0.00021 21.3 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|352682313|ref|YP_004892837.1| - 0.00021 21.7 0.0 0.00025 21.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily TruB_C PF09142.6 gi|352682313|ref|YP_004892837.1| - 0.036 13.7 0.0 0.093 12.3 0.0 1.6 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal CobW_C PF07683.9 gi|352682313|ref|YP_004892837.1| - 0.04 13.6 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain CoA_transf_3 PF02515.12 gi|352682314|ref|YP_004892838.1| - 1.8e-36 125.1 1.0 2.3e-36 124.8 0.2 1.5 2 0 0 2 2 2 1 CoA-transferase family III Bmp PF02608.9 gi|352682315|ref|YP_004892839.1| - 1.1e-67 227.9 5.2 1.5e-67 227.5 3.6 1.2 1 0 0 1 1 1 1 Basic membrane protein DUF161 PF02588.10 gi|352682315|ref|YP_004892839.1| - 0.12 12.6 5.2 0.35 11.1 0.7 2.5 2 0 0 2 2 2 0 Uncharacterized BCR, YitT family COG1284 DUF929 PF06053.6 gi|352682315|ref|YP_004892839.1| - 1 8.4 4.3 3.5 6.6 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF929) ABC_tran PF00005.22 gi|352682316|ref|YP_004892840.1| - 3.6e-41 140.6 0.0 8.5e-28 97.3 0.0 2.4 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|352682316|ref|YP_004892840.1| - 2.8e-12 47.2 0.2 3.9e-05 23.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|352682316|ref|YP_004892840.1| - 9e-05 21.9 0.0 0.018 14.5 0.1 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|352682316|ref|YP_004892840.1| - 0.00042 19.4 0.2 0.26 10.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|352682316|ref|YP_004892840.1| - 0.0011 18.4 0.2 1.3 8.4 0.0 2.5 3 0 0 3 3 3 2 AAA-like domain UPF0079 PF02367.12 gi|352682316|ref|YP_004892840.1| - 0.0028 17.2 0.1 0.0059 16.2 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|352682316|ref|YP_004892840.1| - 0.005 16.0 0.2 0.26 10.4 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|352682316|ref|YP_004892840.1| - 0.0093 16.3 0.1 0.014 15.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352682316|ref|YP_004892840.1| - 0.019 15.0 0.2 0.64 10.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|352682316|ref|YP_004892840.1| - 0.025 14.7 0.0 0.26 11.5 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|352682316|ref|YP_004892840.1| - 0.057 12.8 0.1 0.19 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|352682316|ref|YP_004892840.1| - 0.068 10.4 0.1 0.092 10.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NACHT PF05729.7 gi|352682316|ref|YP_004892840.1| - 0.13 11.9 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.10 gi|352682316|ref|YP_004892840.1| - 0.26 9.9 0.0 0.37 9.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|352682316|ref|YP_004892840.1| - 0.5 8.8 3.5 10 4.5 0.1 3.2 3 1 0 3 3 3 0 Predicted ATPase of the ABC class BPD_transp_2 PF02653.11 gi|352682317|ref|YP_004892841.1| - 2.2e-41 141.6 32.2 2.2e-41 141.6 22.3 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|352682318|ref|YP_004892842.1| - 1.9e-39 135.2 34.2 2.5e-39 134.8 23.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_Omp PF13488.1 gi|352682318|ref|YP_004892842.1| - 0.027 14.0 8.0 0.027 14.0 5.5 3.1 4 0 0 4 4 4 0 Glycine zipper PA-IL PF07828.7 gi|352682318|ref|YP_004892842.1| - 0.14 11.9 0.3 0.44 10.3 0.0 2.0 3 0 0 3 3 3 0 PA-IL-like protein Gly-zipper_OmpA PF13436.1 gi|352682318|ref|YP_004892842.1| - 2.5 7.7 12.7 0.44 10.2 3.5 2.3 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain Sugar_tr PF00083.19 gi|352682319|ref|YP_004892843.1| - 3.4e-34 118.2 29.4 3.3e-22 78.6 5.3 2.0 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|352682319|ref|YP_004892843.1| - 5.4e-21 74.7 60.4 1.1e-13 50.6 19.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1290 PF06947.7 gi|352682319|ref|YP_004892843.1| - 0.27 11.1 0.1 0.27 11.1 0.1 3.3 4 1 1 5 5 5 0 Protein of unknown function (DUF1290) MFS_1 PF07690.11 gi|352682320|ref|YP_004892844.1| - 1.2e-46 159.1 47.6 8.5e-34 116.8 17.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|352682320|ref|YP_004892844.1| - 2.1e-37 128.7 20.7 1.6e-36 125.8 14.3 1.9 1 1 0 1 1 1 1 Sugar (and other) transporter ELFV_dehydrog PF00208.16 gi|352682321|ref|YP_004892845.1| - 3.8e-63 213.3 0.1 4.8e-63 212.9 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|352682321|ref|YP_004892845.1| - 2.4e-48 163.0 0.1 4.5e-48 162.1 0.0 1.5 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|352682321|ref|YP_004892845.1| - 0.0013 17.9 0.1 0.0025 16.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|352682321|ref|YP_004892845.1| - 0.0047 14.4 0.0 0.0066 13.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase AdoHcyase_NAD PF00670.16 gi|352682321|ref|YP_004892845.1| - 0.057 13.2 0.1 0.41 10.4 0.0 2.1 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|352682321|ref|YP_004892845.1| - 0.072 12.6 0.6 0.16 11.5 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Dimerisation PF08100.6 gi|352682321|ref|YP_004892845.1| - 0.12 12.1 0.0 0.44 10.4 0.0 2.0 1 0 0 1 1 1 0 Dimerisation domain ThiF PF00899.16 gi|352682321|ref|YP_004892845.1| - 0.16 11.8 0.3 0.4 10.4 0.1 1.7 2 0 0 2 2 2 0 ThiF family Asp_decarbox PF02261.11 gi|352682322|ref|YP_004892846.1| - 1.9e-33 114.4 0.0 2.3e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 Aspartate decarboxylase DUF1628 PF07790.6 gi|352682323|ref|YP_004892847.1| - 0.0031 18.2 1.1 0.0051 17.5 0.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Baculo_11_kDa PF06143.6 gi|352682323|ref|YP_004892847.1| - 0.16 11.3 0.3 0.26 10.6 0.2 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family BNR_assoc_N PF14873.1 gi|352682324|ref|YP_004892848.1| - 0.22 11.2 0.0 0.44 10.3 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of BNR-repeat neuraminidase DUF973 PF06157.6 gi|352682326|ref|YP_004892850.1| - 0.011 14.6 2.9 0.036 13.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF973) DUF1628 PF07790.6 gi|352682326|ref|YP_004892850.1| - 0.027 15.2 0.0 0.051 14.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) DUF1049 PF06305.6 gi|352682326|ref|YP_004892850.1| - 0.067 12.6 0.5 0.11 11.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) T2SF PF00482.18 gi|352682327|ref|YP_004892851.1| - 1.1e-11 44.6 1.5 2e-11 43.9 1.1 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|352682328|ref|YP_004892852.1| - 3.9e-50 170.2 0.0 6.3e-50 169.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|352682328|ref|YP_004892852.1| - 3.2e-07 30.7 0.0 5.3e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|352682328|ref|YP_004892852.1| - 2.3e-05 23.8 0.0 5.3e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|352682328|ref|YP_004892852.1| - 3.5e-05 23.8 0.0 7.7e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|352682328|ref|YP_004892852.1| - 0.00012 21.8 0.1 0.00047 19.8 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_23 PF13476.1 gi|352682328|ref|YP_004892852.1| - 0.00037 20.8 0.0 0.0007 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|352682328|ref|YP_004892852.1| - 0.0015 18.5 0.0 0.0032 17.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|352682328|ref|YP_004892852.1| - 0.0016 18.3 0.0 0.0037 17.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.14 gi|352682328|ref|YP_004892852.1| - 0.0016 17.9 0.0 0.0026 17.2 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|352682328|ref|YP_004892852.1| - 0.0019 17.6 0.0 0.0038 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|352682328|ref|YP_004892852.1| - 0.002 18.2 0.0 0.016 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|352682328|ref|YP_004892852.1| - 0.0029 16.8 0.0 0.0048 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|352682328|ref|YP_004892852.1| - 0.0033 17.7 0.1 0.01 16.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|352682328|ref|YP_004892852.1| - 0.004 16.5 0.1 0.011 15.1 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|352682328|ref|YP_004892852.1| - 0.0044 17.8 0.8 0.028 15.2 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_21 PF13304.1 gi|352682328|ref|YP_004892852.1| - 0.0044 17.0 0.0 0.0082 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|352682328|ref|YP_004892852.1| - 0.0046 16.4 1.5 0.028 13.9 0.0 2.7 3 0 0 3 3 3 1 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|352682328|ref|YP_004892852.1| - 0.0065 16.2 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase Guanylate_kin PF00625.16 gi|352682328|ref|YP_004892852.1| - 0.007 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Guanylate kinase AAA_25 PF13481.1 gi|352682328|ref|YP_004892852.1| - 0.015 14.7 0.6 0.34 10.3 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_24 PF13479.1 gi|352682328|ref|YP_004892852.1| - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|352682328|ref|YP_004892852.1| - 0.016 14.6 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|352682328|ref|YP_004892852.1| - 0.016 15.6 0.0 0.031 14.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Mg_chelatase PF01078.16 gi|352682328|ref|YP_004892852.1| - 0.018 14.2 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|352682328|ref|YP_004892852.1| - 0.019 14.8 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|352682328|ref|YP_004892852.1| - 0.025 14.3 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|352682328|ref|YP_004892852.1| - 0.03 13.9 0.0 0.077 12.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|352682328|ref|YP_004892852.1| - 0.031 13.9 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.10 gi|352682328|ref|YP_004892852.1| - 0.036 13.9 0.0 0.061 13.1 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.4 gi|352682328|ref|YP_004892852.1| - 0.042 12.4 0.0 0.065 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|352682328|ref|YP_004892852.1| - 0.046 12.7 0.0 0.085 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|352682328|ref|YP_004892852.1| - 0.048 13.3 0.1 0.13 11.9 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.24 gi|352682328|ref|YP_004892852.1| - 0.051 13.0 0.0 0.089 12.2 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase Dynamin_N PF00350.18 gi|352682328|ref|YP_004892852.1| - 0.072 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Dynamin family AAA_33 PF13671.1 gi|352682328|ref|YP_004892852.1| - 0.11 12.4 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.4 gi|352682328|ref|YP_004892852.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.20 gi|352682328|ref|YP_004892852.1| - 0.14 11.6 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_2 PF07724.9 gi|352682328|ref|YP_004892852.1| - 0.17 11.8 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF87 PF01935.12 gi|352682328|ref|YP_004892852.1| - 0.18 11.5 0.1 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 Viral_helicase1 PF01443.13 gi|352682328|ref|YP_004892852.1| - 0.21 11.1 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PIF1 PF05970.9 gi|352682328|ref|YP_004892852.1| - 0.21 10.4 0.0 0.33 9.8 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase T2SF PF00482.18 gi|352682329|ref|YP_004892853.1| - 2.5e-13 49.9 4.4 2.5e-13 49.9 3.1 2.4 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F KaiC PF06745.8 gi|352682331|ref|YP_004892855.1| - 6.2e-27 94.1 0.1 2.9e-18 65.8 0.0 3.4 2 2 1 3 3 3 2 KaiC AAA_25 PF13481.1 gi|352682331|ref|YP_004892855.1| - 4.6e-18 65.3 0.6 2.6e-11 43.2 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|352682331|ref|YP_004892855.1| - 1.1e-12 48.2 0.0 3e-06 27.4 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|352682331|ref|YP_004892855.1| - 2.1e-07 30.7 0.8 0.0025 17.4 0.0 3.1 3 0 0 3 3 3 2 AAA domain GvpD PF07088.6 gi|352682331|ref|YP_004892855.1| - 3e-07 29.1 0.1 5.6e-06 24.9 0.0 2.5 3 0 0 3 3 3 1 GvpD gas vesicle protein Arch_ATPase PF01637.13 gi|352682331|ref|YP_004892855.1| - 3.2e-07 30.2 0.1 0.0008 19.1 0.0 2.9 2 1 0 2 2 2 2 Archaeal ATPase AAA PF00004.24 gi|352682331|ref|YP_004892855.1| - 3.8e-07 30.3 0.0 0.0066 16.6 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|352682331|ref|YP_004892855.1| - 4.3e-07 29.8 0.0 0.014 15.3 0.0 2.4 2 1 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|352682331|ref|YP_004892855.1| - 6.8e-07 29.0 0.5 0.093 12.3 0.1 3.1 2 1 0 2 2 2 2 NACHT domain AAA_10 PF12846.2 gi|352682331|ref|YP_004892855.1| - 7.9e-07 28.7 0.1 0.0048 16.3 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_17 PF13207.1 gi|352682331|ref|YP_004892855.1| - 8.6e-07 29.8 0.2 0.046 14.5 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|352682331|ref|YP_004892855.1| - 1.6e-06 28.0 0.0 0.044 13.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain RecA PF00154.16 gi|352682331|ref|YP_004892855.1| - 1.8e-06 27.2 0.0 0.044 12.8 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_29 PF13555.1 gi|352682331|ref|YP_004892855.1| - 2.2e-06 27.1 0.1 0.033 13.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|352682331|ref|YP_004892855.1| - 2.9e-06 26.9 1.1 0.094 12.4 0.3 2.8 2 0 0 2 2 2 2 Part of AAA domain AAA_16 PF13191.1 gi|352682331|ref|YP_004892855.1| - 4.5e-06 26.7 0.1 0.18 11.7 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain ABC_tran PF00005.22 gi|352682331|ref|YP_004892855.1| - 8e-06 26.1 1.0 0.0026 18.0 0.0 2.7 3 0 0 3 3 2 1 ABC transporter MobB PF03205.9 gi|352682331|ref|YP_004892855.1| - 0.0001 22.0 0.2 0.021 14.5 0.0 3.3 4 0 0 4 4 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|352682331|ref|YP_004892855.1| - 0.00013 22.3 0.1 0.039 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|352682331|ref|YP_004892855.1| - 0.00015 21.3 4.8 0.005 16.4 0.1 3.6 3 2 0 3 3 3 1 AAA domain cobW PF02492.14 gi|352682331|ref|YP_004892855.1| - 0.00027 20.4 0.1 0.083 12.3 0.0 2.6 3 0 0 3 3 2 1 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|352682331|ref|YP_004892855.1| - 0.00028 20.5 1.6 0.17 11.4 0.1 2.7 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 ATP_bind_1 PF03029.12 gi|352682331|ref|YP_004892855.1| - 0.00063 19.3 0.0 0.81 9.1 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|352682331|ref|YP_004892855.1| - 0.00089 18.7 1.8 0.34 10.3 0.1 2.8 2 2 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|352682331|ref|YP_004892855.1| - 0.0012 18.6 0.0 0.81 9.4 0.0 3.4 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|352682331|ref|YP_004892855.1| - 0.0012 19.1 0.1 0.2 11.9 0.0 2.6 3 0 0 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|352682331|ref|YP_004892855.1| - 0.0053 16.4 0.4 0.35 10.5 0.0 3.2 4 0 0 4 4 4 1 NTPase NTPase_P4 PF11602.3 gi|352682331|ref|YP_004892855.1| - 0.0093 14.9 0.1 0.022 13.7 0.1 1.6 1 0 0 1 1 1 1 ATPase P4 of dsRNA bacteriophage phi-12 RNA_helicase PF00910.17 gi|352682331|ref|YP_004892855.1| - 0.011 15.9 0.0 6.2 7.0 0.0 2.4 2 0 0 2 2 2 0 RNA helicase APS_kinase PF01583.15 gi|352682331|ref|YP_004892855.1| - 0.019 14.6 0.1 0.74 9.4 0.0 2.6 3 0 0 3 3 2 0 Adenylylsulphate kinase TK PF00265.13 gi|352682331|ref|YP_004892855.1| - 0.021 14.3 0.0 0.24 10.9 0.0 2.2 2 1 0 2 2 2 0 Thymidine kinase IstB_IS21 PF01695.12 gi|352682331|ref|YP_004892855.1| - 0.022 14.1 0.4 3.2 7.1 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|352682331|ref|YP_004892855.1| - 0.023 13.9 0.0 0.97 8.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 CobA_CobO_BtuR PF02572.10 gi|352682331|ref|YP_004892855.1| - 0.023 14.3 0.4 0.096 12.3 0.0 2.0 2 0 0 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TrwB_AAD_bind PF10412.4 gi|352682331|ref|YP_004892855.1| - 0.028 13.0 0.0 0.13 10.8 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ArgK PF03308.11 gi|352682331|ref|YP_004892855.1| - 0.038 12.7 0.5 0.094 11.4 0.0 1.9 2 0 0 2 2 1 0 ArgK protein PRK PF00485.13 gi|352682331|ref|YP_004892855.1| - 0.049 13.1 0.0 0.79 9.2 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|352682331|ref|YP_004892855.1| - 0.067 12.0 0.4 3 6.6 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_13 PF13166.1 gi|352682331|ref|YP_004892855.1| - 0.075 11.4 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|352682331|ref|YP_004892855.1| - 0.078 12.0 0.1 8.4 5.4 0.0 2.9 3 0 0 3 3 3 0 Zeta toxin PhoH PF02562.11 gi|352682331|ref|YP_004892855.1| - 0.087 12.0 0.6 1.3 8.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_PrkA PF08298.6 gi|352682331|ref|YP_004892855.1| - 0.088 11.4 1.4 0.21 10.2 0.0 2.1 3 0 0 3 3 3 0 PrkA AAA domain T2SE PF00437.15 gi|352682331|ref|YP_004892855.1| - 0.099 11.5 0.0 2 7.2 0.0 2.6 3 0 0 3 3 3 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|352682331|ref|YP_004892855.1| - 0.11 11.4 0.0 5 5.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Miro PF08477.8 gi|352682331|ref|YP_004892855.1| - 0.12 12.9 0.0 15 6.0 0.0 2.5 2 1 0 2 2 2 0 Miro-like protein AAA_35 PF14516.1 gi|352682331|ref|YP_004892855.1| - 0.12 11.0 0.0 0.2 10.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_21 PF13304.1 gi|352682331|ref|YP_004892855.1| - 0.12 12.3 0.0 3.1 7.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain CobU PF02283.11 gi|352682331|ref|YP_004892855.1| - 0.13 11.6 0.6 4.9 6.5 0.1 3.1 3 1 0 3 3 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Thymidylate_kin PF02223.12 gi|352682331|ref|YP_004892855.1| - 0.14 11.5 0.0 11 5.3 0.0 3.2 3 0 0 3 3 3 0 Thymidylate kinase AAA_28 PF13521.1 gi|352682331|ref|YP_004892855.1| - 0.15 12.0 0.0 3.7 7.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain CBS PF00571.23 gi|352682333|ref|YP_004892857.1| - 1.5e-34 117.4 2.4 2.6e-16 59.1 0.0 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.11 gi|352682333|ref|YP_004892857.1| - 0.052 13.4 0.1 0.54 10.2 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Peripla_BP_6 PF13458.1 gi|352682334|ref|YP_004892858.1| - 3.9e-43 148.1 16.7 3.9e-43 148.1 11.6 1.4 2 0 0 2 2 2 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|352682334|ref|YP_004892858.1| - 1.2e-40 139.4 1.1 1.9e-40 138.7 0.8 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|352682334|ref|YP_004892858.1| - 1.3e-10 40.6 0.1 7.1e-06 24.9 0.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein domain LppC PF04348.8 gi|352682334|ref|YP_004892858.1| - 2.2e-08 33.1 3.8 3.4e-08 32.5 2.6 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein SoxE PF06525.6 gi|352682334|ref|YP_004892858.1| - 0.012 14.9 5.8 0.022 14.0 4.0 1.5 1 0 0 1 1 1 0 Sulfocyanin (SoxE) Shisa PF13908.1 gi|352682334|ref|YP_004892858.1| - 0.033 14.3 2.8 0.088 12.9 1.9 1.7 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF1510 PF07423.6 gi|352682334|ref|YP_004892858.1| - 0.17 11.1 0.7 0.28 10.5 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF1628 PF07790.6 gi|352682334|ref|YP_004892858.1| - 0.42 11.3 5.5 1.4 9.6 3.8 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Wzz PF02706.10 gi|352682334|ref|YP_004892858.1| - 1.5 8.6 6.9 4 7.2 4.8 1.7 1 0 0 1 1 1 0 Chain length determinant protein BPD_transp_2 PF02653.11 gi|352682335|ref|YP_004892859.1| - 4e-38 130.9 39.7 5.1e-38 130.5 27.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|352682336|ref|YP_004892860.1| - 4.6e-41 140.5 39.1 4.6e-41 140.5 27.1 2.1 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component COX14 PF14880.1 gi|352682336|ref|YP_004892860.1| - 1.3 8.7 5.0 0.89 9.2 0.1 3.1 3 0 0 3 3 3 0 Cytochrome oxidase c assembly Peripla_BP_6 PF13458.1 gi|352682337|ref|YP_004892861.1| - 1.4e-39 136.4 11.9 1.4e-39 136.4 8.2 1.4 2 0 0 2 2 2 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|352682337|ref|YP_004892861.1| - 1e-34 119.8 0.4 2.1e-34 118.8 0.3 1.5 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|352682337|ref|YP_004892861.1| - 7.1e-10 38.1 0.2 1.3e-08 33.9 0.1 2.2 1 1 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.8 gi|352682337|ref|YP_004892861.1| - 9e-06 24.5 3.1 1.3e-05 24.0 2.1 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein SoxE PF06525.6 gi|352682337|ref|YP_004892861.1| - 0.0014 17.9 6.2 0.0031 16.8 4.3 1.6 1 0 0 1 1 1 1 Sulfocyanin (SoxE) Shisa PF13908.1 gi|352682337|ref|YP_004892861.1| - 0.071 13.2 3.8 0.16 12.1 2.6 1.7 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Avl9 PF09794.4 gi|352682337|ref|YP_004892861.1| - 0.15 10.4 0.1 0.22 9.9 0.1 1.1 1 0 0 1 1 1 0 Transport protein Avl9 DUF1510 PF07423.6 gi|352682337|ref|YP_004892861.1| - 0.17 11.2 0.7 0.28 10.5 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF1628 PF07790.6 gi|352682337|ref|YP_004892861.1| - 2 9.2 8.1 1.4 9.6 3.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) ABC_tran PF00005.22 gi|352682338|ref|YP_004892862.1| - 1.4e-28 99.8 0.0 1.8e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352682338|ref|YP_004892862.1| - 4.7e-09 36.6 0.2 3.9e-05 23.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|352682338|ref|YP_004892862.1| - 2.4e-07 30.1 0.0 4.1e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|352682338|ref|YP_004892862.1| - 1.1e-05 25.9 0.1 1.6e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|352682338|ref|YP_004892862.1| - 1.2e-05 24.8 0.2 2.2e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter Arch_ATPase PF01637.13 gi|352682338|ref|YP_004892862.1| - 0.00021 21.0 0.0 0.00032 20.4 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|352682338|ref|YP_004892862.1| - 0.00022 21.3 0.0 0.0012 18.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|352682338|ref|YP_004892862.1| - 0.0011 17.9 0.0 0.0017 17.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|352682338|ref|YP_004892862.1| - 0.0013 18.4 0.0 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DUF258 PF03193.11 gi|352682338|ref|YP_004892862.1| - 0.0014 17.8 0.0 0.0022 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|352682338|ref|YP_004892862.1| - 0.0016 18.4 0.1 0.0027 17.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|352682338|ref|YP_004892862.1| - 0.0021 17.3 0.1 0.0048 16.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|352682338|ref|YP_004892862.1| - 0.0026 16.4 0.9 0.018 13.6 0.2 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_30 PF13604.1 gi|352682338|ref|YP_004892862.1| - 0.0053 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|352682338|ref|YP_004892862.1| - 0.008 16.1 0.2 0.04 13.8 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|352682338|ref|YP_004892862.1| - 0.013 14.8 0.1 0.043 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|352682338|ref|YP_004892862.1| - 0.014 13.9 0.1 0.025 13.0 0.0 1.5 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.17 gi|352682338|ref|YP_004892862.1| - 0.021 14.2 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.14 gi|352682338|ref|YP_004892862.1| - 0.024 14.1 0.1 0.04 13.3 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|352682338|ref|YP_004892862.1| - 0.026 14.2 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|352682338|ref|YP_004892862.1| - 0.028 14.3 0.0 0.11 12.4 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|352682338|ref|YP_004892862.1| - 0.03 14.1 0.1 0.04 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|352682338|ref|YP_004892862.1| - 0.03 14.5 0.2 0.069 13.3 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|352682338|ref|YP_004892862.1| - 0.039 12.9 0.0 0.054 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Gtr1_RagA PF04670.7 gi|352682338|ref|YP_004892862.1| - 0.071 12.2 0.0 0.22 10.6 0.0 1.7 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AAA_10 PF12846.2 gi|352682338|ref|YP_004892862.1| - 0.074 12.4 0.3 0.2 11.0 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|352682338|ref|YP_004892862.1| - 0.078 13.8 0.2 0.58 10.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|352682339|ref|YP_004892863.1| - 3.3e-30 105.1 0.0 4.3e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352682339|ref|YP_004892863.1| - 1.2e-11 45.1 0.3 2.9e-05 24.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|352682339|ref|YP_004892863.1| - 1.9e-06 27.2 0.0 3.5e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|352682339|ref|YP_004892863.1| - 1.9e-05 23.9 0.1 0.00015 21.1 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|352682339|ref|YP_004892863.1| - 3.5e-05 24.2 0.0 5.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|352682339|ref|YP_004892863.1| - 0.00021 20.5 0.0 0.00042 19.5 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 MutS_V PF00488.16 gi|352682339|ref|YP_004892863.1| - 0.00062 19.2 0.0 0.00094 18.6 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_16 PF13191.1 gi|352682339|ref|YP_004892863.1| - 0.0012 18.9 0.1 0.025 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|352682339|ref|YP_004892863.1| - 0.002 17.6 0.3 0.0041 16.6 0.2 1.5 1 1 1 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|352682339|ref|YP_004892863.1| - 0.003 16.9 0.1 0.006 16.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352682339|ref|YP_004892863.1| - 0.0031 17.2 0.8 0.028 14.1 0.2 2.2 2 0 0 2 2 2 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|352682339|ref|YP_004892863.1| - 0.0056 16.6 0.2 0.013 15.4 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|352682339|ref|YP_004892863.1| - 0.01 15.7 0.0 0.36 10.7 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|352682339|ref|YP_004892863.1| - 0.013 15.1 0.0 0.035 13.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|352682339|ref|YP_004892863.1| - 0.022 14.4 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|352682339|ref|YP_004892863.1| - 0.022 13.3 1.5 0.09 11.3 0.2 2.1 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|352682339|ref|YP_004892863.1| - 0.034 14.3 0.1 0.066 13.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|352682339|ref|YP_004892863.1| - 0.051 13.7 0.1 0.12 12.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|352682339|ref|YP_004892863.1| - 0.067 12.2 0.0 0.12 11.3 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|352682339|ref|YP_004892863.1| - 0.067 12.2 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ArgK PF03308.11 gi|352682339|ref|YP_004892863.1| - 0.09 11.5 0.2 0.15 10.8 0.2 1.3 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|352682339|ref|YP_004892863.1| - 0.092 12.6 0.2 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|352682339|ref|YP_004892863.1| - 0.098 12.6 0.2 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|352682339|ref|YP_004892863.1| - 0.17 11.6 0.1 0.2 11.4 0.1 1.5 1 1 0 1 1 1 0 Dynamin family cobW PF02492.14 gi|352682339|ref|YP_004892863.1| - 0.17 11.2 0.3 0.29 10.5 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|352682339|ref|YP_004892863.1| - 0.19 11.1 0.3 0.67 9.3 0.1 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Sugar_tr PF00083.19 gi|352682340|ref|YP_004892864.1| - 1.5e-23 83.1 22.9 5e-23 81.3 15.9 1.9 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|352682340|ref|YP_004892864.1| - 3.9e-18 65.2 47.5 3.9e-18 65.2 32.9 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily PBP_like PF12727.2 gi|352682341|ref|YP_004892865.1| - 5.4e-58 195.1 0.5 1.5e-57 193.6 0.1 1.8 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.12 gi|352682341|ref|YP_004892865.1| - 4e-55 185.5 0.3 8.9e-55 184.4 0.2 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|352682341|ref|YP_004892865.1| - 1.4e-24 86.1 0.1 2.7e-24 85.2 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|352682341|ref|YP_004892865.1| - 5e-20 71.2 0.5 2.2e-19 69.1 0.0 2.4 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|352682341|ref|YP_004892865.1| - 5.7e-05 22.8 0.0 0.00017 21.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|352682341|ref|YP_004892865.1| - 0.0057 16.0 0.1 0.049 13.0 0.0 2.2 1 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein T2SE PF00437.15 gi|352682341|ref|YP_004892865.1| - 0.06 12.2 0.0 0.19 10.5 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein NAD_binding_2 PF03446.10 gi|352682343|ref|YP_004892867.1| - 3.2e-19 69.3 0.0 5.5e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|352682343|ref|YP_004892867.1| - 9.8e-13 48.2 0.1 1.8e-12 47.4 0.1 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.13 gi|352682343|ref|YP_004892867.1| - 3.8e-07 29.9 0.2 8.6e-07 28.7 0.1 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|352682343|ref|YP_004892867.1| - 7.1e-06 26.3 0.0 1.9e-05 24.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|352682343|ref|YP_004892867.1| - 1.1e-05 24.7 0.0 1.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|352682343|ref|YP_004892867.1| - 1.7e-05 24.6 0.0 3.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus UDPG_MGDP_dh_N PF03721.9 gi|352682343|ref|YP_004892867.1| - 0.00013 21.4 0.1 0.00024 20.5 0.0 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|352682343|ref|YP_004892867.1| - 0.00045 20.1 0.1 0.0052 16.7 0.0 2.4 3 0 0 3 3 3 1 TrkA-N domain ThiF PF00899.16 gi|352682343|ref|YP_004892867.1| - 0.0022 17.8 0.3 0.055 13.2 0.2 2.7 3 0 0 3 3 3 1 ThiF family IlvN PF07991.7 gi|352682343|ref|YP_004892867.1| - 0.012 15.0 0.0 0.025 13.9 0.0 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DAO PF01266.19 gi|352682343|ref|YP_004892867.1| - 0.015 14.2 1.7 0.026 13.4 1.1 1.8 1 1 0 1 1 1 0 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.17 gi|352682343|ref|YP_004892867.1| - 0.044 14.3 0.0 0.09 13.2 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|352682343|ref|YP_004892867.1| - 0.12 12.1 0.1 2.3 7.9 0.1 2.2 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|352682343|ref|YP_004892867.1| - 0.13 12.2 0.4 1.4 8.8 0.2 2.5 2 1 0 2 2 2 0 NADH(P)-binding Phage_Treg PF04761.7 gi|352682344|ref|YP_004892868.1| - 0.059 13.1 0.3 0.14 11.8 0.1 1.7 2 0 0 2 2 2 0 Lactococcus bacteriophage putative transcription regulator GATase_6 PF13522.1 gi|352682345|ref|YP_004892869.1| - 1.8e-10 40.9 0.1 6.9e-10 39.0 0.0 1.8 1 1 1 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|352682345|ref|YP_004892869.1| - 0.00031 19.5 0.0 0.00058 18.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferases class-II AsnC_trans_reg PF01037.16 gi|352682346|ref|YP_004892870.1| - 7.2e-18 64.0 0.4 8e-18 63.9 0.3 1.0 1 0 0 1 1 1 1 AsnC family HMA PF00403.21 gi|352682346|ref|YP_004892870.1| - 0.0066 16.5 0.1 0.0093 16.0 0.0 1.3 1 0 0 1 1 1 1 Heavy-metal-associated domain GYD PF08734.6 gi|352682346|ref|YP_004892870.1| - 0.054 13.2 0.0 0.061 13.0 0.0 1.2 1 0 0 1 1 1 0 GYD domain AsnC_trans_reg PF01037.16 gi|352682348|ref|YP_004892872.1| - 3.7e-21 74.5 0.0 7e-21 73.7 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|352682348|ref|YP_004892872.1| - 5.6e-15 54.4 0.6 1e-14 53.6 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|352682348|ref|YP_004892872.1| - 3.3e-13 48.9 0.3 6e-13 48.1 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|352682348|ref|YP_004892872.1| - 2.8e-06 26.9 0.1 5.2e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|352682348|ref|YP_004892872.1| - 4.3e-06 26.9 0.0 8.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|352682348|ref|YP_004892872.1| - 4.5e-06 26.2 0.1 1.2e-05 24.8 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|352682348|ref|YP_004892872.1| - 1.2e-05 24.8 0.0 9.5e-05 21.9 0.0 2.1 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|352682348|ref|YP_004892872.1| - 1.9e-05 24.2 0.0 5.8e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|352682348|ref|YP_004892872.1| - 9.8e-05 22.0 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|352682348|ref|YP_004892872.1| - 0.0031 17.5 0.0 0.0056 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|352682348|ref|YP_004892872.1| - 0.0037 17.2 0.4 0.012 15.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|352682348|ref|YP_004892872.1| - 0.0052 16.4 0.0 0.065 12.9 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|352682348|ref|YP_004892872.1| - 0.0064 16.6 0.1 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|352682348|ref|YP_004892872.1| - 0.012 15.1 0.1 0.03 13.8 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|352682348|ref|YP_004892872.1| - 0.012 15.1 0.2 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|352682348|ref|YP_004892872.1| - 0.036 13.6 0.0 0.08 12.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|352682348|ref|YP_004892872.1| - 0.075 13.1 0.1 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor Sigma70_r4_2 PF08281.7 gi|352682348|ref|YP_004892872.1| - 0.086 12.3 0.1 0.19 11.1 0.1 1.6 2 0 0 2 2 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|352682348|ref|YP_004892872.1| - 0.089 12.1 0.1 0.15 11.3 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Rrf2 PF02082.15 gi|352682348|ref|YP_004892872.1| - 0.13 12.4 0.1 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DNase-RNase PF02577.9 gi|352682349|ref|YP_004892873.1| - 2e-37 127.4 0.0 2.3e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease FlgD_ig PF13860.1 gi|352682349|ref|YP_004892873.1| - 0.021 14.5 0.0 0.23 11.2 0.0 2.3 2 1 1 3 3 3 0 FlgD Ig-like domain Big_3_4 PF13754.1 gi|352682349|ref|YP_004892873.1| - 0.028 14.7 0.4 0.068 13.5 0.1 1.7 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) MR_MLE_C PF13378.1 gi|352682350|ref|YP_004892874.1| - 5.5e-23 81.0 0.0 9.3e-23 80.3 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|352682350|ref|YP_004892874.1| - 1.6e-14 53.9 0.0 3.9e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|352682350|ref|YP_004892874.1| - 4.5e-14 52.7 0.2 1.4e-13 51.0 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DHDPS PF00701.17 gi|352682351|ref|YP_004892875.1| - 8.9e-42 142.6 0.0 1e-41 142.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF849 PF05853.7 gi|352682351|ref|YP_004892875.1| - 0.11 11.3 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) PfkB PF00294.19 gi|352682352|ref|YP_004892876.1| - 1.1e-46 159.4 0.0 1.2e-46 159.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Glyco_hydro_15 PF00723.16 gi|352682353|ref|YP_004892877.1| - 2.9e-20 72.2 0.4 2e-16 59.6 0.6 2.8 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|352682353|ref|YP_004892877.1| - 3.3e-10 39.2 0.1 6.4e-10 38.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|352682353|ref|YP_004892877.1| - 0.0013 17.0 0.0 0.002 16.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase TPR_19 PF14559.1 gi|352682353|ref|YP_004892877.1| - 0.055 13.8 0.4 0.21 11.9 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat BacA PF02673.13 gi|352682354|ref|YP_004892878.1| - 1.1e-50 172.2 16.3 1.4e-50 171.9 11.3 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Rad51 PF08423.6 gi|352682355|ref|YP_004892879.1| - 1.5e-37 128.9 0.0 1.8e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|352682355|ref|YP_004892879.1| - 5.9e-09 35.6 0.0 9.8e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|352682355|ref|YP_004892879.1| - 2.7e-08 33.2 0.3 1.4e-07 30.8 0.2 1.9 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|352682355|ref|YP_004892879.1| - 2.7e-06 27.4 0.5 7.8e-06 25.9 0.3 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_10 PF12846.2 gi|352682355|ref|YP_004892879.1| - 0.00012 21.5 0.0 0.00048 19.6 0.0 1.8 1 1 0 1 1 1 1 AAA-like domain RecA PF00154.16 gi|352682355|ref|YP_004892879.1| - 0.00037 19.6 0.0 0.00054 19.1 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein NB-ARC PF00931.17 gi|352682355|ref|YP_004892879.1| - 0.0058 15.5 0.0 0.0081 15.0 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain CobU PF02283.11 gi|352682355|ref|YP_004892879.1| - 0.032 13.6 0.0 0.17 11.2 0.0 1.9 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.24 gi|352682355|ref|YP_004892879.1| - 0.039 14.1 0.0 0.13 12.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|352682355|ref|YP_004892879.1| - 0.044 12.9 0.0 0.063 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 HEM4 PF02602.10 gi|352682355|ref|YP_004892879.1| - 0.046 12.9 0.3 0.093 11.9 0.2 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD ABC_tran PF00005.22 gi|352682355|ref|YP_004892879.1| - 0.071 13.4 0.0 0.11 12.8 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_24 PF13479.1 gi|352682355|ref|YP_004892879.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain MFS_1 PF07690.11 gi|352682356|ref|YP_004892880.1| - 2.5e-51 174.4 35.3 2.5e-51 174.4 24.5 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily Mab-21 PF03281.9 gi|352682356|ref|YP_004892880.1| - 0.4 9.7 1.4 0.57 9.2 0.9 1.1 1 0 0 1 1 1 0 Mab-21 protein MFS_1_like PF12832.2 gi|352682356|ref|YP_004892880.1| - 3.6 7.4 9.3 0.47 10.2 0.1 4.0 4 2 0 4 4 4 0 MFS_1 like family DUF3397 PF11877.3 gi|352682358|ref|YP_004892882.1| - 0.049 13.6 1.0 0.049 13.6 0.7 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3397) Lactamase_B PF00753.22 gi|352682359|ref|YP_004892883.1| - 1.5e-27 96.5 0.5 2e-27 96.1 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|352682359|ref|YP_004892883.1| - 0.00011 21.7 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|352682359|ref|YP_004892883.1| - 0.011 15.4 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF973 PF06157.6 gi|352682360|ref|YP_004892884.1| - 2e-19 69.6 17.4 5.9e-17 61.5 9.0 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF2976 PF11190.3 gi|352682360|ref|YP_004892884.1| - 0.041 13.4 7.9 0.088 12.3 5.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) Claudin_2 PF13903.1 gi|352682360|ref|YP_004892884.1| - 0.045 13.4 5.2 0.063 12.9 3.6 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction K_trans PF02705.11 gi|352682360|ref|YP_004892884.1| - 0.12 10.7 7.7 0.14 10.4 5.4 1.1 1 0 0 1 1 1 0 K+ potassium transporter DUF373 PF04123.8 gi|352682360|ref|YP_004892884.1| - 0.14 11.1 10.9 0.16 10.9 7.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF996 PF06195.8 gi|352682360|ref|YP_004892884.1| - 0.92 9.4 15.3 2.6 8.0 6.1 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF996) ATP1G1_PLM_MAT8 PF02038.11 gi|352682360|ref|YP_004892884.1| - 7.7 5.6 17.9 4.6 6.3 1.9 3.5 3 1 0 3 3 3 0 ATP1G1/PLM/MAT8 family Arch_ATPase PF01637.13 gi|352682361|ref|YP_004892885.1| - 4.3e-27 95.3 0.0 7.6e-27 94.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|352682361|ref|YP_004892885.1| - 2e-09 37.6 0.2 1.8e-08 34.6 0.1 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|352682361|ref|YP_004892885.1| - 5e-07 29.6 0.0 0.038 13.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|352682361|ref|YP_004892885.1| - 0.00039 20.5 0.0 0.00089 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.5 gi|352682361|ref|YP_004892885.1| - 0.021 14.4 0.0 0.095 12.3 0.0 2.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Zot PF05707.7 gi|352682361|ref|YP_004892885.1| - 0.1 12.0 0.0 0.23 10.9 0.0 1.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Aldedh PF00171.17 gi|352682364|ref|YP_004892888.1| - 6.2e-122 407.2 0.0 7.2e-122 407.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|352682364|ref|YP_004892888.1| - 1.7e-05 23.7 0.0 2.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) YCII PF03795.9 gi|352682364|ref|YP_004892888.1| - 0.0085 16.2 0.2 0.06 13.5 0.1 2.3 1 1 0 1 1 1 1 YCII-related domain Antitoxin-MazE PF04014.13 gi|352682365|ref|YP_004892889.1| - 5.3e-11 41.9 1.0 5.3e-11 41.9 0.7 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|352682366|ref|YP_004892890.1| - 3.5e-07 30.5 0.1 4.2e-07 30.3 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|352682366|ref|YP_004892890.1| - 8.6e-05 23.1 0.0 9.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 PIN domain AAA_14 PF13173.1 gi|352682367|ref|YP_004892891.1| - 2.8e-18 66.0 0.0 5.4e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|352682367|ref|YP_004892891.1| - 2.2e-09 37.3 0.0 5.1e-09 36.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|352682367|ref|YP_004892891.1| - 0.00023 20.9 0.0 0.0022 17.7 0.0 2.1 1 1 1 2 2 2 1 Archaeal ATPase AAA_25 PF13481.1 gi|352682367|ref|YP_004892891.1| - 0.0032 16.8 0.0 0.0059 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain PaREP1 PF05942.6 gi|352682368|ref|YP_004892892.1| - 4e-30 104.0 1.1 5.6e-30 103.5 0.8 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family F420_oxidored PF03807.12 gi|352682368|ref|YP_004892892.1| - 0.055 13.8 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Radical_SAM PF04055.16 gi|352682370|ref|YP_004892894.1| - 1.1e-19 71.2 0.0 2.2e-19 70.2 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|352682370|ref|YP_004892894.1| - 2.5e-12 47.0 0.0 3.7e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|352682370|ref|YP_004892894.1| - 4.9e-12 45.9 0.0 8.8e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|352682370|ref|YP_004892894.1| - 0.00084 18.6 0.0 0.35 10.1 0.0 2.4 2 1 0 2 2 2 2 Xylose isomerase-like TIM barrel Amidohydro_2 PF04909.9 gi|352682370|ref|YP_004892894.1| - 0.073 12.6 0.0 0.14 11.6 0.0 1.5 1 1 1 2 2 2 0 Amidohydrolase NRDD PF13597.1 gi|352682371|ref|YP_004892895.1| - 3.4e-176 586.5 0.0 3.9e-176 586.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.1 gi|352682371|ref|YP_004892895.1| - 0.0022 17.1 2.9 0.004 16.2 2.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|352682371|ref|YP_004892895.1| - 0.042 13.6 0.3 0.088 12.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|352682371|ref|YP_004892895.1| - 0.061 13.0 4.7 0.18 11.5 3.2 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Ribosomal_L37e PF01907.14 gi|352682371|ref|YP_004892895.1| - 0.074 12.8 2.0 0.15 11.8 1.4 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Peptidase_M29 PF02073.10 gi|352682371|ref|YP_004892895.1| - 0.26 10.0 0.4 1.6 7.4 0.6 1.8 2 0 0 2 2 2 0 Thermophilic metalloprotease (M29) zinc_ribbon_2 PF13240.1 gi|352682371|ref|YP_004892895.1| - 1.3 8.6 5.3 7.1 6.2 3.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain PaREP1 PF05942.6 gi|352682373|ref|YP_004892897.1| - 0.0001 22.1 0.0 0.0001 22.1 0.0 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TruB_C PF09142.6 gi|352682373|ref|YP_004892897.1| - 0.054 13.1 0.5 0.077 12.6 0.4 1.2 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal DUF2276 PF10040.4 gi|352682375|ref|YP_004892899.1| - 1.6e-21 76.7 0.2 1.9e-21 76.5 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) RelB PF04221.7 gi|352682377|ref|YP_004892901.1| - 0.066 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 RelB antitoxin DsrC PF04358.8 gi|352682379|ref|YP_004892903.1| - 3.4e-37 127.0 0.0 3.8e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein MerR-DNA-bind PF09278.6 gi|352682379|ref|YP_004892903.1| - 0.12 12.8 0.0 0.44 10.9 0.0 1.8 2 0 0 2 2 2 0 MerR, DNA binding NIR_SIR PF01077.17 gi|352682381|ref|YP_004892905.1| - 9.7e-36 122.4 0.0 1.5e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|352682381|ref|YP_004892905.1| - 4.7e-09 35.7 0.0 8.8e-09 34.8 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|352682381|ref|YP_004892905.1| - 0.00011 22.4 0.5 0.00011 22.4 0.3 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352682381|ref|YP_004892905.1| - 0.005 16.8 2.9 0.013 15.5 1.1 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352682381|ref|YP_004892905.1| - 0.012 15.8 5.2 0.097 12.9 3.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682381|ref|YP_004892905.1| - 0.014 15.1 4.3 0.026 14.3 1.9 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352682381|ref|YP_004892905.1| - 0.024 15.1 1.2 0.051 14.1 0.2 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|352682381|ref|YP_004892905.1| - 0.034 13.7 12.9 0.11 12.1 3.3 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|352682381|ref|YP_004892905.1| - 0.054 13.3 7.2 0.47 10.4 2.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|352682381|ref|YP_004892905.1| - 0.054 13.8 1.0 0.054 13.8 0.7 2.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|352682381|ref|YP_004892905.1| - 0.061 14.0 3.3 8.6 7.1 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_19 PF06902.6 gi|352682381|ref|YP_004892905.1| - 0.072 12.9 7.4 3.3 7.5 0.0 3.9 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.1 gi|352682381|ref|YP_004892905.1| - 0.1 12.4 1.9 0.14 12.0 0.5 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352682381|ref|YP_004892905.1| - 0.47 10.4 6.6 0.087 12.7 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain NIR_SIR PF01077.17 gi|352682382|ref|YP_004892906.1| - 9.5e-31 106.2 0.0 1.4e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|352682382|ref|YP_004892906.1| - 0.0015 18.1 0.0 0.0052 16.3 0.0 1.9 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Nitrate_red_gam PF02665.9 gi|352682383|ref|YP_004892907.1| - 1.6e-32 112.6 12.2 5.1e-31 107.7 3.9 2.1 2 0 0 2 2 2 2 Nitrate reductase gamma subunit Fer4_8 PF13183.1 gi|352682385|ref|YP_004892909.1| - 7.1e-13 48.3 3.9 1.9e-12 46.9 2.7 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352682385|ref|YP_004892909.1| - 5.7e-11 42.6 3.2 5.7e-11 42.6 2.2 2.7 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352682385|ref|YP_004892909.1| - 9.3e-11 41.9 6.7 1.4e-10 41.3 3.5 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|352682385|ref|YP_004892909.1| - 4e-09 36.3 3.9 4.3e-09 36.2 0.2 2.7 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|352682385|ref|YP_004892909.1| - 8.2e-09 35.7 2.6 0.0008 19.7 0.1 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352682385|ref|YP_004892909.1| - 2.5e-08 34.0 6.6 0.0002 21.5 0.2 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682385|ref|YP_004892909.1| - 4.2e-08 32.8 5.9 4.2e-08 32.8 4.1 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352682385|ref|YP_004892909.1| - 1e-06 29.4 3.9 1e-06 29.4 2.7 2.2 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|352682385|ref|YP_004892909.1| - 1.1e-06 28.1 11.7 0.00014 21.6 2.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|352682385|ref|YP_004892909.1| - 1.1e-05 25.3 12.3 0.00068 19.7 1.6 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|352682385|ref|YP_004892909.1| - 2.2e-05 23.8 15.3 9.9e-05 21.7 3.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352682385|ref|YP_004892909.1| - 0.00011 21.9 5.3 0.02 14.7 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352682385|ref|YP_004892909.1| - 0.00065 19.4 12.9 0.00088 19.0 2.2 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|352682385|ref|YP_004892909.1| - 0.002 18.6 2.9 0.082 13.4 0.2 2.8 3 0 0 3 3 2 1 4Fe-4S single cluster domain Complex1_LYR PF05347.10 gi|352682385|ref|YP_004892909.1| - 0.0059 16.3 0.1 0.018 14.7 0.1 1.9 1 0 0 1 1 1 1 Complex 1 protein (LYR family) Fer4_3 PF12798.2 gi|352682385|ref|YP_004892909.1| - 0.025 15.1 6.1 0.025 15.1 4.2 3.2 4 0 0 4 4 2 0 4Fe-4S binding domain Complex1_LYR_1 PF13232.1 gi|352682385|ref|YP_004892909.1| - 0.028 14.6 0.0 0.079 13.1 0.0 1.8 1 0 0 1 1 1 0 Complex1_LYR-like Fer4_13 PF13370.1 gi|352682385|ref|YP_004892909.1| - 0.041 14.2 7.4 0.12 12.7 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain YopX PF09643.5 gi|352682385|ref|YP_004892909.1| - 0.11 12.4 0.2 0.35 10.8 0.0 1.8 2 0 0 2 2 2 0 YopX protein Rrf2 PF02082.15 gi|352682386|ref|YP_004892910.1| - 0.0008 19.4 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|352682386|ref|YP_004892910.1| - 0.037 13.8 0.0 0.098 12.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|352682386|ref|YP_004892910.1| - 0.043 13.4 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 MarR family DUF1641 PF07849.6 gi|352682387|ref|YP_004892911.1| - 2.7e-13 49.2 0.2 5.1e-10 38.8 0.0 2.7 2 1 1 3 3 3 2 Protein of unknown function (DUF1641) SRA1 PF07304.6 gi|352682387|ref|YP_004892911.1| - 0.039 13.6 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Steroid receptor RNA activator (SRA1) Pyr_redox_2 PF07992.9 gi|352682388|ref|YP_004892912.1| - 8e-09 35.6 0.0 2.7e-08 33.9 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|352682388|ref|YP_004892912.1| - 0.00031 21.0 0.2 0.58 10.6 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352682388|ref|YP_004892912.1| - 0.00063 19.5 0.1 0.23 11.2 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding DAO PF01266.19 gi|352682388|ref|YP_004892912.1| - 0.008 15.1 0.0 4.3 6.1 0.1 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|352682388|ref|YP_004892912.1| - 0.04 13.9 0.0 0.09 12.8 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|352682388|ref|YP_004892912.1| - 0.12 10.9 0.0 0.2 10.2 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase GATase_3 PF07685.9 gi|352682389|ref|YP_004892913.1| - 5.4e-29 100.8 0.0 8.3e-29 100.2 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|352682389|ref|YP_004892913.1| - 2.5e-20 72.7 0.0 3.8e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|352682389|ref|YP_004892913.1| - 1.3e-14 54.3 2.2 1.2e-09 38.1 0.0 2.6 2 1 1 3 3 3 2 AAA domain TP_methylase PF00590.15 gi|352682390|ref|YP_004892914.1| - 4.5e-41 140.8 0.9 5.4e-41 140.6 0.6 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Oxidored_molyb PF00174.14 gi|352682391|ref|YP_004892915.1| - 1.3e-40 138.5 0.0 1.5e-40 138.3 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Lactamase_B_3 PF13483.1 gi|352682392|ref|YP_004892916.1| - 4.1e-17 62.3 0.0 5.2e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|352682392|ref|YP_004892916.1| - 5.5e-11 42.3 0.0 8.8e-10 38.4 0.0 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352682392|ref|YP_004892916.1| - 1.2 8.7 5.7 4.7 6.8 0.1 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily FdhD-NarQ PF02634.10 gi|352682393|ref|YP_004892917.1| - 2.1e-41 141.9 1.8 2.4e-41 141.7 1.2 1.0 1 0 0 1 1 1 1 FdhD/NarQ family FdhE PF04216.7 gi|352682394|ref|YP_004892918.1| - 9.6e-13 48.4 0.2 1.1e-12 48.3 0.2 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Rubredoxin PF00301.15 gi|352682394|ref|YP_004892918.1| - 0.0084 15.9 9.4 0.1 12.4 0.8 3.4 3 0 0 3 3 3 1 Rubredoxin DZR PF12773.2 gi|352682394|ref|YP_004892918.1| - 0.045 13.5 3.5 0.11 12.2 0.8 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|352682394|ref|YP_004892918.1| - 0.057 13.4 3.7 4.3 7.4 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|352682394|ref|YP_004892918.1| - 0.07 12.3 10.8 4.7 6.5 4.5 3.2 2 1 1 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|352682394|ref|YP_004892918.1| - 0.32 10.3 5.6 11 5.4 0.0 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding Cys_rich_KTR PF14205.1 gi|352682394|ref|YP_004892918.1| - 2.8 7.4 5.9 12 5.4 1.5 2.7 2 1 0 2 2 2 0 Cysteine-rich KTR OrfB_Zn_ribbon PF07282.6 gi|352682394|ref|YP_004892918.1| - 4.4 7.0 9.8 8.1 6.1 0.4 3.2 1 1 3 4 4 4 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|352682394|ref|YP_004892918.1| - 8.3 6.0 14.3 30 4.2 0.1 3.2 2 1 0 2 2 2 0 zinc-ribbon domain Cytochrom_B_N PF00033.14 gi|352682395|ref|YP_004892919.1| - 1.5e-17 63.5 11.1 1.8e-17 63.3 7.7 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|352682395|ref|YP_004892919.1| - 3.9e-14 52.4 9.7 4.7e-14 52.1 6.7 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.1 gi|352682395|ref|YP_004892919.1| - 1.2 9.2 20.6 0.12 12.4 5.7 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) DUF485 PF04341.7 gi|352682395|ref|YP_004892919.1| - 7 6.4 7.4 0.6 9.8 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function, DUF485 Fer4_11 PF13247.1 gi|352682396|ref|YP_004892920.1| - 3.3e-28 97.4 14.9 3.3e-27 94.2 6.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352682396|ref|YP_004892920.1| - 2.2e-16 59.8 22.8 6.3e-08 32.7 8.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352682396|ref|YP_004892920.1| - 3.3e-16 59.3 42.0 2.5e-07 30.9 7.6 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682396|ref|YP_004892920.1| - 2.7e-12 46.3 27.6 5.9e-08 32.3 7.1 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352682396|ref|YP_004892920.1| - 5.1e-12 44.8 38.9 2.1e-07 30.2 2.6 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|352682396|ref|YP_004892920.1| - 5.1e-11 41.9 41.6 4.5e-06 26.2 2.5 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352682396|ref|YP_004892920.1| - 2.6e-10 39.5 35.4 3.4e-06 26.6 1.5 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|352682396|ref|YP_004892920.1| - 2.3e-08 33.9 21.5 5.7e-05 23.0 1.3 3.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|352682396|ref|YP_004892920.1| - 7.4e-08 32.3 40.4 0.0014 18.9 2.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352682396|ref|YP_004892920.1| - 1.5e-07 31.1 25.0 8.7e-05 22.3 7.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352682396|ref|YP_004892920.1| - 6.2e-07 29.8 17.7 0.0097 16.4 0.3 4.2 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|352682396|ref|YP_004892920.1| - 2e-05 25.2 26.0 5.4 7.8 0.0 5.0 4 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|352682396|ref|YP_004892920.1| - 5.4e-05 23.1 36.3 0.0083 16.3 2.5 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|352682396|ref|YP_004892920.1| - 0.0003 21.0 25.2 0.019 15.2 1.6 4.5 2 1 3 5 5 5 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|352682396|ref|YP_004892920.1| - 0.0026 18.0 26.6 0.033 14.5 5.5 4.0 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|352682396|ref|YP_004892920.1| - 0.028 14.8 2.5 0.028 14.8 1.7 4.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|352682396|ref|YP_004892920.1| - 0.18 11.4 14.8 0.018 14.6 6.2 1.9 2 0 0 2 2 2 0 Growth factor receptor domain IV Molybdopterin PF00384.17 gi|352682397|ref|YP_004892921.1| - 2e-42 145.4 0.0 9.5e-41 139.9 0.0 3.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|352682397|ref|YP_004892921.1| - 7e-14 51.5 0.0 1.5e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|352682397|ref|YP_004892921.1| - 4.8e-13 48.6 0.2 1.1e-12 47.5 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|352682397|ref|YP_004892921.1| - 0.024 14.5 1.2 0.082 12.9 0.8 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UPF0227 PF05728.7 gi|352682398|ref|YP_004892922.1| - 0.0069 16.1 0.0 0.0069 16.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Antimicrobial20 PF08256.6 gi|352682398|ref|YP_004892922.1| - 5.3 7.6 6.7 15 6.2 0.6 2.5 2 0 0 2 2 2 0 Aurein-like antibiotic peptide TrmB PF01978.14 gi|352682399|ref|YP_004892923.1| - 0.0015 18.1 0.4 0.0027 17.3 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|352682399|ref|YP_004892923.1| - 0.025 14.1 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain NurA PF09376.5 gi|352682400|ref|YP_004892924.1| - 5.8e-33 114.4 0.4 9e-33 113.7 0.3 1.3 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.12 gi|352682401|ref|YP_004892925.1| - 2.2e-34 119.2 0.0 3.9e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|352682401|ref|YP_004892925.1| - 1.2e-24 87.3 0.0 1.9e-24 86.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|352682401|ref|YP_004892925.1| - 3.1e-09 36.6 1.4 0.00062 19.2 0.0 2.6 3 0 0 3 3 3 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|352682401|ref|YP_004892925.1| - 2e-08 33.2 0.0 5e-06 25.3 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|352682401|ref|YP_004892925.1| - 6.2e-08 31.4 0.2 0.00096 17.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.5 gi|352682401|ref|YP_004892925.1| - 7.2e-08 32.2 0.4 2e-07 30.8 0.1 1.9 2 0 0 2 2 1 1 HAS barrel domain Zot PF05707.7 gi|352682401|ref|YP_004892925.1| - 1.1e-05 25.0 0.0 0.015 14.7 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) ResIII PF04851.10 gi|352682401|ref|YP_004892925.1| - 0.00022 21.1 0.0 0.0014 18.4 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T4SS-DNA_transf PF02534.9 gi|352682401|ref|YP_004892925.1| - 0.00036 19.2 0.0 0.00058 18.5 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA PF00004.24 gi|352682401|ref|YP_004892925.1| - 0.003 17.7 0.0 0.0095 16.1 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|352682401|ref|YP_004892925.1| - 0.016 14.6 0.0 0.17 11.2 0.0 2.3 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|352682401|ref|YP_004892925.1| - 0.029 14.0 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B LigB PF02900.13 gi|352682401|ref|YP_004892925.1| - 0.047 12.6 0.0 0.092 11.7 0.0 1.4 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase AAA_19 PF13245.1 gi|352682401|ref|YP_004892925.1| - 0.054 13.2 0.2 0.16 11.7 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain DEAD PF00270.24 gi|352682401|ref|YP_004892925.1| - 0.1 12.0 0.0 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|352682401|ref|YP_004892925.1| - 0.11 12.6 0.0 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain Metallophos_2 PF12850.2 gi|352682402|ref|YP_004892926.1| - 2.4e-12 46.9 0.0 3.7e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|352682402|ref|YP_004892926.1| - 3.5e-12 46.1 0.0 4.8e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF4175 PF13779.1 gi|352682402|ref|YP_004892926.1| - 0.15 9.7 4.7 0.038 11.6 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4175) SMC_N PF02463.14 gi|352682403|ref|YP_004892927.1| - 3.1e-22 78.8 0.0 1.2e-21 76.9 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|352682403|ref|YP_004892927.1| - 6.8e-20 72.2 0.1 6.8e-20 72.2 0.1 4.1 1 1 0 2 2 1 1 AAA domain AAA_13 PF13166.1 gi|352682403|ref|YP_004892927.1| - 1.2e-19 70.2 8.8 2.7e-10 39.3 0.0 3.3 2 1 0 3 3 3 3 AAA domain AAA_21 PF13304.1 gi|352682403|ref|YP_004892927.1| - 4.9e-14 52.9 0.0 4.7e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|352682403|ref|YP_004892927.1| - 3.2e-08 33.9 1.6 0.011 16.0 0.3 3.9 3 2 0 3 3 3 2 ABC transporter AAA_29 PF13555.1 gi|352682403|ref|YP_004892927.1| - 2.6e-06 26.8 0.0 4.7e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.1 gi|352682403|ref|YP_004892927.1| - 4.9e-06 24.5 84.9 0.00031 18.5 0.3 4.4 3 1 1 4 4 4 2 AAA domain IncA PF04156.9 gi|352682403|ref|YP_004892927.1| - 1.3e-05 24.8 66.3 0.00076 19.1 9.1 4.0 1 1 3 4 4 4 2 IncA protein SbcCD_C PF13558.1 gi|352682403|ref|YP_004892927.1| - 3.6e-05 23.5 0.2 0.00013 21.7 0.0 2.1 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|352682403|ref|YP_004892927.1| - 4e-05 22.8 0.0 0.00079 18.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain GAS PF13851.1 gi|352682403|ref|YP_004892927.1| - 0.00033 19.9 10.9 0.00033 19.9 7.5 4.1 2 2 1 4 4 4 1 Growth-arrest specific micro-tubule binding Rad50_zn_hook PF04423.9 gi|352682403|ref|YP_004892927.1| - 0.0033 16.8 0.1 0.0033 16.8 0.1 5.0 5 0 0 5 5 5 1 Rad50 zinc hook motif DivIC PF04977.10 gi|352682403|ref|YP_004892927.1| - 0.015 14.7 0.5 0.015 14.7 0.4 7.2 3 2 6 9 9 9 0 Septum formation initiator Reo_sigmaC PF04582.7 gi|352682403|ref|YP_004892927.1| - 0.024 13.8 3.8 0.068 12.3 0.1 2.7 3 0 0 3 3 3 0 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|352682403|ref|YP_004892927.1| - 0.031 14.1 63.7 0.26 11.1 13.7 4.2 2 2 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF258 PF03193.11 gi|352682403|ref|YP_004892927.1| - 0.074 12.2 0.0 0.18 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|352682403|ref|YP_004892927.1| - 0.076 13.2 0.0 0.52 10.5 0.0 2.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) zf-IS66 PF13005.2 gi|352682403|ref|YP_004892927.1| - 0.16 11.9 0.6 0.44 10.5 0.4 1.8 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 AAA_25 PF13481.1 gi|352682403|ref|YP_004892927.1| - 0.31 10.4 0.0 0.31 10.4 0.0 5.0 3 2 2 5 5 5 0 AAA domain IL2 PF00715.12 gi|352682403|ref|YP_004892927.1| - 0.33 10.6 0.9 1.9 8.1 0.1 2.4 2 0 0 2 2 2 0 Interleukin 2 HALZ PF02183.13 gi|352682403|ref|YP_004892927.1| - 0.33 10.6 22.3 0.088 12.5 2.0 4.5 3 1 0 3 3 3 0 Homeobox associated leucine zipper DUF342 PF03961.8 gi|352682403|ref|YP_004892927.1| - 0.36 9.1 32.3 1.3 7.3 5.1 4.1 1 1 5 6 6 6 0 Protein of unknown function (DUF342) STAT_alpha PF01017.15 gi|352682403|ref|YP_004892927.1| - 0.44 10.2 18.1 1.9 8.1 1.2 3.3 3 0 0 3 3 3 0 STAT protein, all-alpha domain WXG100 PF06013.7 gi|352682403|ref|YP_004892927.1| - 0.51 10.3 21.6 12 5.9 4.7 5.8 4 2 1 5 5 5 0 Proteins of 100 residues with WXG Nsp1_C PF05064.8 gi|352682403|ref|YP_004892927.1| - 0.73 9.4 17.9 0.58 9.8 0.4 4.3 3 2 1 4 4 4 0 Nsp1-like C-terminal region Myosin_tail_1 PF01576.14 gi|352682403|ref|YP_004892927.1| - 2.4 5.7 79.2 0.065 10.9 19.9 2.2 2 0 0 2 2 2 0 Myosin tail AAA_17 PF13207.1 gi|352682403|ref|YP_004892927.1| - 2.5 8.9 0.0 2.5 8.9 0.0 4.8 2 1 0 2 2 1 0 AAA domain BLOC1_2 PF10046.4 gi|352682403|ref|YP_004892927.1| - 2.5 8.2 18.8 1 9.5 0.2 5.3 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.10 gi|352682403|ref|YP_004892927.1| - 2.7 7.6 9.2 12 5.5 0.9 3.2 2 2 0 3 3 3 0 Sec34-like family Occludin_ELL PF07303.8 gi|352682403|ref|YP_004892927.1| - 3.8 8.3 27.8 4.8 7.9 2.6 5.2 3 2 2 5 5 5 0 Occludin homology domain AAA_22 PF13401.1 gi|352682403|ref|YP_004892927.1| - 3.9 7.6 8.6 0.59 10.2 0.1 3.8 3 2 0 3 3 3 0 AAA domain RasGAP_C PF03836.10 gi|352682403|ref|YP_004892927.1| - 4.8 6.8 17.1 1.1 9.0 0.2 3.9 3 1 1 4 4 4 0 RasGAP C-terminus DNA_ligase_ZBD PF03119.11 gi|352682403|ref|YP_004892927.1| - 7.1 6.4 6.0 1.5 8.5 0.6 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain eRF1_2 PF03464.10 gi|352682404|ref|YP_004892928.1| - 4e-27 95.1 0.2 8.6e-27 94.0 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|352682404|ref|YP_004892928.1| - 1e-15 57.4 0.0 1.7e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|352682404|ref|YP_004892928.1| - 2.4e-10 40.6 2.4 3.3e-09 36.9 1.7 2.6 1 1 0 1 1 1 1 eRF1 domain 3 Ribosomal_L7Ae PF01248.21 gi|352682404|ref|YP_004892928.1| - 0.029 13.8 0.1 0.067 12.7 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Sulfotransfer_3 PF13469.1 gi|352682405|ref|YP_004892929.1| - 0.2 12.5 3.7 0.25 12.2 2.6 1.2 1 0 0 1 1 1 0 Sulfotransferase family NTP_transf_2 PF01909.18 gi|352682406|ref|YP_004892930.1| - 1.5e-10 41.2 0.0 2.1e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|352682406|ref|YP_004892930.1| - 0.012 15.6 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm XdhC_C PF13478.1 gi|352682407|ref|YP_004892931.1| - 9.9e-25 87.4 1.1 1.7e-24 86.6 0.8 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|352682407|ref|YP_004892931.1| - 0.0022 17.1 0.1 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|352682407|ref|YP_004892931.1| - 0.0047 16.9 4.3 0.0067 16.4 1.3 2.0 1 1 1 2 2 2 1 NADH(P)-binding DUF4143 PF13635.1 gi|352682408|ref|YP_004892932.1| - 2.6e-09 37.1 0.0 3e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) SinI PF08671.5 gi|352682408|ref|YP_004892932.1| - 0.021 14.2 0.1 6.3 6.3 0.0 2.7 3 0 0 3 3 3 0 Anti-repressor SinI HTH_24 PF13412.1 gi|352682408|ref|YP_004892932.1| - 0.043 13.1 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|352682408|ref|YP_004892932.1| - 0.059 12.9 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|352682408|ref|YP_004892932.1| - 0.088 12.0 0.0 0.21 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Acetyltransf_1 PF00583.19 gi|352682409|ref|YP_004892933.1| - 2.1e-16 59.6 1.3 3e-16 59.1 0.9 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|352682409|ref|YP_004892933.1| - 7.2e-13 48.7 0.0 9.1e-13 48.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|352682409|ref|YP_004892933.1| - 9.1e-11 42.0 0.0 1.1e-10 41.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|352682409|ref|YP_004892933.1| - 1.2e-10 41.5 0.2 1.4e-10 41.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|352682409|ref|YP_004892933.1| - 9e-09 35.3 0.1 1.3e-08 34.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|352682409|ref|YP_004892933.1| - 9.2e-07 28.8 0.0 1.2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|352682409|ref|YP_004892933.1| - 2.5e-06 27.1 0.1 4.9e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|352682409|ref|YP_004892933.1| - 0.00072 19.4 0.0 0.0011 18.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|352682409|ref|YP_004892933.1| - 0.0026 17.7 0.5 0.004 17.0 0.4 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|352682409|ref|YP_004892933.1| - 0.011 15.5 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|352682409|ref|YP_004892933.1| - 0.015 14.9 0.9 0.019 14.5 0.6 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acyl-CoA_dh_N PF02771.11 gi|352682409|ref|YP_004892933.1| - 0.076 13.6 0.1 0.11 13.1 0.1 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, N-terminal domain DNA_pol_delta_4 PF04081.8 gi|352682410|ref|YP_004892934.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase delta, subunit 4 DUF1626 PF07788.6 gi|352682411|ref|YP_004892935.1| - 2e-12 46.7 0.9 4.1e-12 45.7 0.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF2580 PF10824.3 gi|352682411|ref|YP_004892935.1| - 7.1e-05 23.0 0.1 0.00041 20.6 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2580) MCPsignal PF00015.16 gi|352682411|ref|YP_004892935.1| - 0.002 17.7 0.1 0.003 17.1 0.1 1.2 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain YqaJ PF09588.5 gi|352682411|ref|YP_004892935.1| - 0.0031 17.4 1.3 2.1 8.3 0.5 2.3 1 1 1 2 2 2 2 YqaJ-like viral recombinase domain DUF3584 PF12128.3 gi|352682411|ref|YP_004892935.1| - 0.015 12.7 0.7 0.019 12.3 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BAR_3_WASP_bdg PF10456.4 gi|352682411|ref|YP_004892935.1| - 0.015 14.5 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 WASP-binding domain of Sorting nexin protein Nup54 PF13874.1 gi|352682411|ref|YP_004892935.1| - 0.025 14.2 2.6 0.69 9.5 0.1 2.3 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF1932 PF09130.6 gi|352682411|ref|YP_004892935.1| - 0.041 13.6 0.4 0.041 13.6 0.3 2.8 2 1 2 4 4 3 0 Domain of unknown function (DUF1932) DUF4559 PF15112.1 gi|352682411|ref|YP_004892935.1| - 0.044 12.9 0.7 0.064 12.4 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Phage_GPO PF05929.6 gi|352682411|ref|YP_004892935.1| - 0.046 12.9 1.4 0.15 11.2 0.8 1.9 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF948 PF06103.6 gi|352682411|ref|YP_004892935.1| - 0.047 13.5 0.1 0.28 11.0 0.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) MutS_III PF05192.13 gi|352682411|ref|YP_004892935.1| - 0.047 13.4 0.1 0.064 13.0 0.0 1.4 1 1 0 1 1 1 0 MutS domain III DUF892 PF05974.7 gi|352682411|ref|YP_004892935.1| - 0.047 13.4 2.3 0.083 12.7 1.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF892) FtsK_SpoIIIE PF01580.13 gi|352682411|ref|YP_004892935.1| - 0.05 13.0 2.2 0.072 12.5 0.2 2.0 2 1 1 3 3 3 0 FtsK/SpoIIIE family Apolipoprotein PF01442.13 gi|352682411|ref|YP_004892935.1| - 0.087 12.3 6.0 0.21 11.0 4.3 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain IncA PF04156.9 gi|352682411|ref|YP_004892935.1| - 0.089 12.3 2.7 0.17 11.4 1.9 1.4 1 1 0 1 1 1 0 IncA protein Syntaxin-6_N PF09177.6 gi|352682411|ref|YP_004892935.1| - 0.12 12.8 1.5 0.23 11.9 1.0 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Spc7 PF08317.6 gi|352682411|ref|YP_004892935.1| - 0.14 10.7 0.8 0.23 10.0 0.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|352682411|ref|YP_004892935.1| - 0.14 11.2 0.0 0.18 10.9 0.0 1.2 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Orbi_VP5 PF00901.12 gi|352682411|ref|YP_004892935.1| - 0.17 10.0 7.1 0.018 13.2 2.0 1.4 2 0 0 2 2 2 0 Orbivirus outer capsid protein VP5 RRF_GI PF12614.3 gi|352682411|ref|YP_004892935.1| - 0.22 11.3 2.3 0.38 10.5 1.2 1.6 1 1 1 2 2 2 0 Ribosome recycling factor Atg14 PF10186.4 gi|352682411|ref|YP_004892935.1| - 0.23 10.3 1.6 0.3 9.9 1.1 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TMF_TATA_bd PF12325.3 gi|352682411|ref|YP_004892935.1| - 0.3 10.8 8.6 0.33 10.7 3.7 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding phiKZ_IP PF12699.2 gi|352682411|ref|YP_004892935.1| - 0.34 9.8 3.3 1.5 7.6 0.4 2.2 1 1 1 2 2 2 0 phiKZ-like phage internal head proteins zf-C4H2 PF10146.4 gi|352682411|ref|YP_004892935.1| - 0.74 9.7 5.8 0.11 12.5 1.3 1.5 2 0 0 2 2 2 0 Zinc finger-containing protein FlgN PF05130.7 gi|352682411|ref|YP_004892935.1| - 0.87 9.8 5.8 4.6 7.4 3.6 2.0 1 1 0 1 1 1 0 FlgN protein CcdA PF07362.7 gi|352682411|ref|YP_004892935.1| - 4.8 7.1 7.9 20 5.1 0.3 3.9 3 1 0 4 4 3 0 Post-segregation antitoxin CcdA ATP-grasp PF02222.17 gi|352682412|ref|YP_004892936.1| - 0.045 13.0 0.0 0.046 13.0 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain HEPN PF05168.9 gi|352682414|ref|YP_004892938.1| - 6.1e-32 109.9 1.4 6.6e-32 109.8 1.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF726 PF05277.7 gi|352682414|ref|YP_004892938.1| - 0.024 13.5 0.0 0.029 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Trans_reg_C PF00486.23 gi|352682414|ref|YP_004892938.1| - 0.05 13.5 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal ClpB_D2-small PF10431.4 gi|352682414|ref|YP_004892938.1| - 0.077 12.9 0.1 0.16 11.8 0.0 1.6 1 1 1 2 2 2 0 C-terminal, D2-small domain, of ClpB protein NTP_transf_2 PF01909.18 gi|352682415|ref|YP_004892939.1| - 5.7e-08 32.9 0.1 6.5e-08 32.7 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain TauE PF01925.14 gi|352682416|ref|YP_004892940.1| - 6.9e-09 35.5 14.0 7.8e-09 35.3 9.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3040 PF11239.3 gi|352682416|ref|YP_004892940.1| - 2.1 8.4 5.5 0.34 10.9 0.2 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) PaREP1 PF05942.6 gi|352682417|ref|YP_004892941.1| - 8.5e-23 80.4 10.0 1.4e-22 79.7 6.9 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|352682417|ref|YP_004892941.1| - 0.01 15.6 1.9 0.018 14.9 1.3 1.4 1 0 0 1 1 1 0 HEPN domain RyR PF02026.11 gi|352682417|ref|YP_004892941.1| - 0.051 13.5 1.1 0.079 12.9 0.3 1.6 2 0 0 2 2 2 0 RyR domain OppC_N PF12911.2 gi|352682419|ref|YP_004892943.1| - 0.96 8.8 7.8 0.056 12.8 1.4 2.0 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Cas_DxTHG PF09455.5 gi|352682420|ref|YP_004892944.1| - 8.2e-27 94.3 0.0 3.4e-26 92.3 0.0 1.8 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family HD PF01966.17 gi|352682422|ref|YP_004892946.1| - 0.0001 22.3 0.0 0.0004 20.3 0.0 2.0 1 0 0 1 1 1 1 HD domain RAMPs PF03787.10 gi|352682423|ref|YP_004892947.1| - 0.00084 19.2 0.0 0.001 18.9 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|352682425|ref|YP_004892949.1| - 7.7e-09 35.6 0.0 1.8e-08 34.5 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily Cation_ATPase_N PF00690.21 gi|352682426|ref|YP_004892950.1| - 0.066 12.6 0.1 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus DUF676 PF05057.9 gi|352682427|ref|YP_004892951.1| - 0.083 12.1 0.0 0.52 9.5 0.0 1.9 2 0 0 2 2 2 0 Putative serine esterase (DUF676) AAA_21 PF13304.1 gi|352682428|ref|YP_004892952.1| - 7.2e-06 26.1 0.0 8.3e-06 25.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain Cas_APE2256 PF09651.5 gi|352682430|ref|YP_004892954.1| - 6.3e-35 119.8 0.0 9.4e-35 119.2 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) AAA_21 PF13304.1 gi|352682431|ref|YP_004892955.1| - 0.0011 18.9 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|352682431|ref|YP_004892955.1| - 0.0056 15.9 0.2 0.0059 15.8 0.2 1.0 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|352682431|ref|YP_004892955.1| - 0.017 15.4 0.1 0.018 15.3 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|352682431|ref|YP_004892955.1| - 0.024 14.1 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF815 PF05673.8 gi|352682431|ref|YP_004892955.1| - 0.035 13.0 0.0 0.039 12.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MutS_V PF00488.16 gi|352682431|ref|YP_004892955.1| - 0.088 12.2 0.0 0.095 12.0 0.0 1.1 1 0 0 1 1 1 0 MutS domain V ABC_tran PF00005.22 gi|352682431|ref|YP_004892955.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 ABC transporter WWE PF02825.15 gi|352682432|ref|YP_004892956.1| - 0.0099 15.2 1.0 0.012 14.9 0.7 1.2 1 0 0 1 1 1 1 WWE domain Cas_DxTHG PF09455.5 gi|352682433|ref|YP_004892957.1| - 3.8e-22 78.9 0.0 1.1e-21 77.4 0.0 1.8 2 0 0 2 2 2 1 CRISPR-associated (Cas) DxTHG family Cas_Cas4 PF01930.12 gi|352682434|ref|YP_004892958.1| - 5.9e-17 62.0 0.0 6.8e-17 61.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|352682434|ref|YP_004892958.1| - 1.2e-09 37.9 0.5 8.9e-09 35.0 0.0 1.9 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily HTH_31 PF13560.1 gi|352682434|ref|YP_004892958.1| - 0.067 13.4 0.1 11 6.3 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain CRISPR_Cas2 PF09827.4 gi|352682435|ref|YP_004892959.1| - 5.5e-16 58.4 0.0 9e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|352682435|ref|YP_004892959.1| - 1.7e-13 50.2 0.0 2.3e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF911 PF06023.7 gi|352682437|ref|YP_004892961.1| - 1.9e-90 303.0 0.0 2.1e-90 302.8 0.0 1.0 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) PDDEXK_1 PF12705.2 gi|352682437|ref|YP_004892961.1| - 9.1e-05 21.9 0.0 0.0016 17.9 0.0 2.0 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HTH_24 PF13412.1 gi|352682438|ref|YP_004892962.1| - 0.00037 19.8 0.0 0.0012 18.1 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|352682438|ref|YP_004892962.1| - 0.00041 20.0 0.0 0.001 18.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|352682438|ref|YP_004892962.1| - 0.002 17.7 2.0 0.0047 16.4 0.0 2.7 4 1 0 4 4 4 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|352682438|ref|YP_004892962.1| - 0.0033 17.5 0.0 0.01 15.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|352682438|ref|YP_004892962.1| - 0.0058 16.4 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|352682438|ref|YP_004892962.1| - 0.0058 16.7 0.0 0.025 14.7 0.0 2.0 2 1 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.2 gi|352682438|ref|YP_004892962.1| - 0.03 13.9 2.1 0.13 11.9 0.7 2.6 2 1 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|352682438|ref|YP_004892962.1| - 0.041 14.1 0.1 0.12 12.6 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|352682438|ref|YP_004892962.1| - 0.048 13.3 0.5 0.42 10.3 0.0 2.5 3 0 0 3 3 3 0 Homeodomain-like domain HTH_5 PF01022.15 gi|352682438|ref|YP_004892962.1| - 0.048 13.3 0.0 0.33 10.6 0.0 2.5 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|352682438|ref|YP_004892962.1| - 0.059 13.1 0.5 0.17 11.7 0.4 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|352682438|ref|YP_004892962.1| - 0.089 12.9 0.0 0.21 11.7 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|352682438|ref|YP_004892962.1| - 0.11 12.2 0.1 0.54 9.9 0.0 2.1 2 0 0 2 2 2 0 HTH domain DUF4315 PF14193.1 gi|352682439|ref|YP_004892963.1| - 0.0061 16.4 0.1 0.015 15.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4315) VHS PF00790.14 gi|352682439|ref|YP_004892963.1| - 0.043 13.4 0.1 0.074 12.6 0.0 1.5 2 0 0 2 2 2 0 VHS domain Rabaptin PF03528.10 gi|352682439|ref|YP_004892963.1| - 0.088 12.7 0.5 0.15 11.9 0.3 1.4 1 0 0 1 1 1 0 Rabaptin DUF4164 PF13747.1 gi|352682439|ref|YP_004892963.1| - 0.097 12.8 1.8 0.16 12.1 1.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) DevR PF01905.11 gi|352682440|ref|YP_004892964.1| - 2.9e-56 190.3 0.0 3.4e-56 190.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.5 gi|352682441|ref|YP_004892965.1| - 1e-06 28.5 0.6 4.1e-06 26.5 0.4 1.8 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|352682442|ref|YP_004892966.1| - 1.3e-14 54.0 0.0 1.1e-13 51.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|352682442|ref|YP_004892966.1| - 4.7e-07 29.5 0.0 1e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|352682442|ref|YP_004892966.1| - 6.4e-06 26.1 0.0 1.6e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|352682442|ref|YP_004892966.1| - 0.18 10.5 0.0 0.35 9.6 0.0 1.5 2 0 0 2 2 2 0 SNF2 family N-terminal domain HD PF01966.17 gi|352682443|ref|YP_004892967.1| - 3.3e-06 27.1 1.7 0.00021 21.2 0.3 2.2 2 0 0 2 2 2 2 HD domain DUF3667 PF12412.3 gi|352682443|ref|YP_004892967.1| - 0.053 12.8 0.3 0.14 11.5 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) Cas_Csa4 PF09703.5 gi|352682444|ref|YP_004892968.1| - 2.6e-32 112.2 0.0 3.4e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) ABC_tran PF00005.22 gi|352682445|ref|YP_004892969.1| - 0.16 12.2 0.0 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NosD PF05048.8 gi|352682450|ref|YP_004892974.1| - 1.4e-26 93.1 0.8 6.4e-18 64.7 0.0 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|352682450|ref|YP_004892974.1| - 4.9e-21 75.1 25.9 5.5e-10 39.2 3.4 2.6 1 1 2 3 3 3 3 Right handed beta helix region 2-Hacid_dh_C PF02826.14 gi|352682451|ref|YP_004892975.1| - 2.1e-34 118.1 0.0 3.2e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|352682451|ref|YP_004892975.1| - 1.7e-13 50.2 0.0 2.1e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_10 PF13460.1 gi|352682451|ref|YP_004892975.1| - 0.0027 17.7 0.3 0.022 14.7 0.0 2.1 2 0 0 2 2 2 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|352682451|ref|YP_004892975.1| - 0.0037 17.1 0.0 0.0082 15.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|352682451|ref|YP_004892975.1| - 0.029 14.2 0.0 0.77 9.5 0.0 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|352682451|ref|YP_004892975.1| - 0.035 13.8 0.1 1.4 8.6 0.1 2.4 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|352682451|ref|YP_004892975.1| - 0.056 13.5 0.0 6.4 6.8 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|352682451|ref|YP_004892975.1| - 0.086 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.12 gi|352682451|ref|YP_004892975.1| - 0.19 12.1 0.9 0.73 10.3 0.1 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|352682451|ref|YP_004892975.1| - 2.7 7.5 4.3 1.6 8.2 0.0 2.7 3 1 1 4 4 4 0 Alanine dehydrogenase/PNT, C-terminal domain NurA PF09376.5 gi|352682452|ref|YP_004892976.1| - 1.8e-08 34.1 0.0 5.4e-08 32.6 0.0 1.8 1 1 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|352682454|ref|YP_004892978.1| - 2.8e-19 69.6 0.0 4e-09 36.3 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|352682454|ref|YP_004892978.1| - 1.3e-15 56.7 0.3 8.8e-07 27.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|352682454|ref|YP_004892978.1| - 5.8e-11 42.6 0.0 2.3e-10 40.6 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|352682454|ref|YP_004892978.1| - 2.8e-09 36.7 0.2 7.7e-05 22.2 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|352682454|ref|YP_004892978.1| - 2.3e-07 29.7 0.0 4.3e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|352682454|ref|YP_004892978.1| - 3.3e-06 27.2 0.1 0.0048 17.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|352682454|ref|YP_004892978.1| - 1.3e-05 25.4 0.2 0.11 12.6 0.1 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|352682454|ref|YP_004892978.1| - 1.7e-05 24.3 0.2 0.11 11.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|352682454|ref|YP_004892978.1| - 8.7e-05 22.5 1.4 0.0013 18.7 1.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain Zot PF05707.7 gi|352682454|ref|YP_004892978.1| - 0.00061 19.3 0.1 0.014 14.8 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|352682454|ref|YP_004892978.1| - 0.00079 18.4 0.0 0.0013 17.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein MobB PF03205.9 gi|352682454|ref|YP_004892978.1| - 0.00093 18.9 0.1 0.0017 18.0 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|352682454|ref|YP_004892978.1| - 0.0011 18.6 0.1 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|352682454|ref|YP_004892978.1| - 0.0014 18.3 0.4 0.0045 16.7 0.3 1.9 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|352682454|ref|YP_004892978.1| - 0.0042 16.1 0.2 0.38 9.6 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|352682454|ref|YP_004892978.1| - 0.01 15.6 0.0 0.064 13.0 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.16 gi|352682454|ref|YP_004892978.1| - 0.011 14.8 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|352682454|ref|YP_004892978.1| - 0.029 15.1 0.0 0.085 13.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain Corona_5a PF06336.6 gi|352682454|ref|YP_004892978.1| - 0.032 14.1 0.3 17 5.4 0.0 3.6 3 0 0 3 3 3 0 Coronavirus 5a protein Zeta_toxin PF06414.7 gi|352682454|ref|YP_004892978.1| - 0.039 13.0 0.0 0.078 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DEAD PF00270.24 gi|352682454|ref|YP_004892978.1| - 0.066 12.7 0.0 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase SRP54 PF00448.17 gi|352682454|ref|YP_004892978.1| - 0.067 12.6 0.2 0.15 11.5 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|352682454|ref|YP_004892978.1| - 0.074 12.6 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|352682454|ref|YP_004892978.1| - 0.088 12.3 0.1 0.22 11.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|352682454|ref|YP_004892978.1| - 0.13 11.6 0.2 0.24 10.7 0.1 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|352682454|ref|YP_004892978.1| - 0.15 12.3 0.0 0.33 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|352682454|ref|YP_004892978.1| - 0.17 10.9 0.0 0.29 10.1 0.0 1.3 1 0 0 1 1 1 0 KaiC IstB_IS21 PF01695.12 gi|352682454|ref|YP_004892978.1| - 0.18 11.2 0.2 0.34 10.3 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP-synt_ab PF00006.20 gi|352682454|ref|YP_004892978.1| - 0.19 11.2 0.0 0.45 9.9 0.0 1.6 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MFS_1 PF07690.11 gi|352682455|ref|YP_004892979.1| - 7.2e-16 57.8 59.8 1.1e-15 57.1 41.4 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|352682455|ref|YP_004892979.1| - 2.3e-15 56.1 37.6 1.7e-12 46.7 11.6 2.2 1 1 0 2 2 2 2 Sugar (and other) transporter Phage_holin_3 PF05106.7 gi|352682455|ref|YP_004892979.1| - 1.3 9.0 6.5 1.2 9.2 0.3 3.1 3 0 0 3 3 3 0 Phage holin family (Lysis protein S) Pyr_redox_2 PF07992.9 gi|352682456|ref|YP_004892980.1| - 8e-32 110.7 2.7 5.2e-30 104.8 2.1 3.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|352682456|ref|YP_004892980.1| - 6e-19 68.2 7.9 7.9e-16 58.2 1.4 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|352682456|ref|YP_004892980.1| - 6e-15 55.8 0.7 0.00011 22.2 0.0 3.7 4 0 0 4 4 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|352682456|ref|YP_004892980.1| - 1.9e-06 27.7 0.9 0.0029 17.5 0.0 3.2 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|352682456|ref|YP_004892980.1| - 1e-05 25.3 2.9 1.4 8.6 0.0 3.6 3 1 0 3 3 3 3 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|352682456|ref|YP_004892980.1| - 1.1e-05 24.5 0.7 5e-05 22.3 0.0 2.3 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|352682456|ref|YP_004892980.1| - 0.00014 20.5 2.3 0.052 12.0 0.3 2.9 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_7 PF13241.1 gi|352682456|ref|YP_004892980.1| - 0.00014 22.0 0.1 0.64 10.2 0.2 2.7 3 0 0 3 3 3 2 Putative NAD(P)-binding FAD_binding_2 PF00890.19 gi|352682456|ref|YP_004892980.1| - 0.00097 18.0 1.0 0.00097 18.0 0.7 3.2 4 0 0 4 4 4 1 FAD binding domain Trp_halogenase PF04820.9 gi|352682456|ref|YP_004892980.1| - 0.011 14.3 0.7 0.019 13.5 0.2 1.6 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.17 gi|352682456|ref|YP_004892980.1| - 0.019 13.8 0.3 0.079 11.8 0.1 2.1 3 0 0 3 3 3 0 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|352682456|ref|YP_004892980.1| - 0.022 14.8 3.7 2 8.5 0.4 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|352682456|ref|YP_004892980.1| - 0.028 13.3 0.2 0.028 13.3 0.2 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|352682456|ref|YP_004892980.1| - 0.037 13.1 0.8 0.13 11.4 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Usp PF00582.21 gi|352682456|ref|YP_004892980.1| - 0.039 14.1 2.9 0.26 11.4 0.9 2.8 1 1 1 2 2 2 0 Universal stress protein family TrkA_N PF02254.13 gi|352682456|ref|YP_004892980.1| - 0.071 13.1 3.4 4.6 7.2 0.1 3.0 3 0 0 3 3 3 0 TrkA-N domain CPSase_L_chain PF00289.17 gi|352682456|ref|YP_004892980.1| - 0.096 12.7 0.2 14 5.8 0.1 2.5 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Thi4 PF01946.12 gi|352682456|ref|YP_004892980.1| - 0.15 11.1 1.6 0.62 9.1 0.1 2.2 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.13 gi|352682456|ref|YP_004892980.1| - 4.8 6.7 5.4 0.65 9.6 0.3 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Molybdopterin PF00384.17 gi|352682457|ref|YP_004892981.1| - 3.2e-92 309.5 0.0 3.9e-92 309.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|352682457|ref|YP_004892981.1| - 2.1e-26 91.8 0.1 6.4e-26 90.3 0.0 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|352682457|ref|YP_004892981.1| - 7.7e-16 57.6 0.3 2.7e-15 55.9 0.2 2.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.11 gi|352682457|ref|YP_004892981.1| - 1.5e-14 53.4 1.5 1.5e-14 53.4 1.0 2.6 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2 PF00111.22 gi|352682457|ref|YP_004892981.1| - 1.4e-08 34.3 0.5 1.4e-08 34.3 0.3 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.22 gi|352682457|ref|YP_004892981.1| - 1.7e-08 33.7 19.3 1.4e-06 27.6 2.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|352682457|ref|YP_004892981.1| - 1.6e-06 27.7 15.5 6.1e-05 22.7 2.7 3.8 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352682457|ref|YP_004892981.1| - 3.7e-06 26.6 9.9 3.7e-06 26.6 6.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352682457|ref|YP_004892981.1| - 9.4e-06 25.3 6.8 9.4e-06 25.3 4.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352682457|ref|YP_004892981.1| - 1.1e-05 25.6 30.9 1.9e-05 24.9 9.2 2.8 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352682457|ref|YP_004892981.1| - 2e-05 24.4 9.2 2e-05 24.4 6.4 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352682457|ref|YP_004892981.1| - 2.5e-05 24.4 10.9 2.5e-05 24.4 7.6 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352682457|ref|YP_004892981.1| - 3.7e-05 24.0 11.5 0.0025 18.1 0.7 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352682457|ref|YP_004892981.1| - 0.0002 21.1 13.5 0.00029 20.5 1.8 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|352682457|ref|YP_004892981.1| - 0.00042 20.9 3.1 0.00042 20.9 2.1 3.3 4 1 1 5 5 3 1 4Fe-4S double cluster binding domain Peripla_BP_6 PF13458.1 gi|352682457|ref|YP_004892981.1| - 0.001 18.4 0.0 0.033 13.5 0.0 2.2 2 0 0 2 2 2 1 Periplasmic binding protein Fer4_4 PF12800.2 gi|352682457|ref|YP_004892981.1| - 0.007 16.6 4.7 0.007 16.6 3.2 3.7 5 0 0 5 5 2 2 4Fe-4S binding domain Fer2_3 PF13085.1 gi|352682457|ref|YP_004892981.1| - 0.018 14.8 0.1 0.018 14.8 0.0 1.8 2 0 0 2 2 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_3 PF12798.2 gi|352682457|ref|YP_004892981.1| - 0.024 15.1 8.2 0.024 15.1 5.7 3.9 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|352682457|ref|YP_004892981.1| - 0.15 12.4 18.9 0.11 12.8 1.5 3.1 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|352682457|ref|YP_004892981.1| - 7.8 7.1 13.3 8.2 7.0 2.5 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Complex1_51K PF01512.12 gi|352682458|ref|YP_004892982.1| - 1.9e-40 138.0 0.0 2.9e-40 137.4 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|352682458|ref|YP_004892982.1| - 5.9e-18 63.7 1.1 1.5e-17 62.4 0.7 1.8 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 2Fe-2S_thioredx PF01257.14 gi|352682458|ref|YP_004892982.1| - 7.8e-09 35.2 0.0 5.4e-08 32.5 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin SLBB PF10531.4 gi|352682458|ref|YP_004892982.1| - 1.1e-06 28.3 0.3 2.7e-06 27.1 0.2 1.7 1 0 0 1 1 1 1 SLBB domain HTH_psq PF05225.11 gi|352682458|ref|YP_004892982.1| - 0.094 12.2 0.9 0.26 10.8 0.0 2.2 2 0 0 2 2 2 0 helix-turn-helix, Psq domain TPR_19 PF14559.1 gi|352682458|ref|YP_004892982.1| - 0.64 10.3 3.9 8.2 6.8 0.1 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Cons_hypoth698 PF03601.9 gi|352682459|ref|YP_004892983.1| - 1e-22 80.1 20.3 2.6e-22 78.8 14.0 1.6 1 1 0 1 1 1 1 Conserved hypothetical protein 698 DUF2276 PF10040.4 gi|352682460|ref|YP_004892984.1| - 4.2e-26 91.5 0.5 1.5e-25 89.7 0.4 1.8 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2276) Beta_helix PF13229.1 gi|352682461|ref|YP_004892985.1| - 0.00011 21.9 15.5 0.00019 21.2 10.8 1.4 1 0 0 1 1 1 1 Right handed beta helix region YXWGXW PF12779.2 gi|352682461|ref|YP_004892985.1| - 0.044 13.6 0.8 0.14 12.0 0.6 2.0 1 0 0 1 1 1 0 YXWGXW repeat (2 copies) LVIVD PF08309.6 gi|352682461|ref|YP_004892985.1| - 1.7 7.6 9.4 0.65 9.0 1.0 3.4 3 0 0 3 3 3 0 LVIVD repeat APC_crr PF05923.7 gi|352682462|ref|YP_004892986.1| - 0.22 11.2 2.1 0.49 10.0 1.5 1.6 1 0 0 1 1 1 0 APC cysteine-rich region OrfB_Zn_ribbon PF07282.6 gi|352682463|ref|YP_004892987.1| - 1.7e-11 43.6 0.0 3.4e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|352682463|ref|YP_004892987.1| - 0.00092 18.6 1.9 0.0017 17.7 1.3 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|352682463|ref|YP_004892987.1| - 0.0019 17.6 2.2 0.0037 16.6 1.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|352682463|ref|YP_004892987.1| - 0.0022 17.6 0.8 0.0035 17.0 0.5 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.2 gi|352682463|ref|YP_004892987.1| - 0.0035 17.1 1.0 0.0057 16.4 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|352682463|ref|YP_004892987.1| - 0.0043 16.5 4.4 0.0043 16.5 3.0 1.9 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|352682463|ref|YP_004892987.1| - 0.016 14.4 3.6 0.095 11.9 2.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|352682463|ref|YP_004892987.1| - 0.023 14.3 2.2 0.1 12.2 0.4 2.3 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|352682463|ref|YP_004892987.1| - 0.091 12.5 1.0 0.2 11.4 0.7 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) C1_1 PF00130.17 gi|352682463|ref|YP_004892987.1| - 0.15 11.7 0.3 0.28 10.9 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ISL3 PF14690.1 gi|352682463|ref|YP_004892987.1| - 0.18 11.8 4.4 2.4 8.2 0.2 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.7 gi|352682463|ref|YP_004892987.1| - 0.32 10.6 3.6 5.9 6.6 0.3 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-IS66 PF13005.2 gi|352682463|ref|YP_004892987.1| - 0.51 10.3 3.5 1.4 8.9 0.2 2.9 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.1 gi|352682463|ref|YP_004892987.1| - 0.52 10.0 3.2 5.6 6.7 2.2 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|352682463|ref|YP_004892987.1| - 0.59 9.7 3.5 6 6.5 2.4 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|352682463|ref|YP_004892987.1| - 0.9 9.0 4.8 0.73 9.3 1.0 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|352682463|ref|YP_004892987.1| - 2.7 8.0 5.6 7.8 6.5 0.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain DUF4381 PF14316.1 gi|352682464|ref|YP_004892988.1| - 0.087 12.9 0.3 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) PFK PF00365.15 gi|352682465|ref|YP_004892989.1| - 2.7e-73 246.3 0.2 3.5e-73 246.0 0.1 1.1 1 0 0 1 1 1 1 Phosphofructokinase DeoC PF01791.4 gi|352682466|ref|YP_004892990.1| - 4.5e-36 124.3 0.0 5.2e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|352682466|ref|YP_004892990.1| - 0.042 13.1 0.0 0.28 10.4 0.0 2.2 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel GTP_EFTU_D2 PF03144.20 gi|352682467|ref|YP_004892991.1| - 0.014 15.5 0.1 0.032 14.3 0.1 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 2 DUF1641 PF07849.6 gi|352682468|ref|YP_004892992.1| - 6.6e-17 60.8 0.3 1.2e-16 60.0 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HALZ PF02183.13 gi|352682468|ref|YP_004892992.1| - 7.8e-05 22.3 1.9 0.00015 21.4 1.3 1.5 1 0 0 1 1 1 1 Homeobox associated leucine zipper DASH_Dad3 PF08656.5 gi|352682468|ref|YP_004892992.1| - 0.12 12.0 0.3 0.85 9.3 0.2 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad3 Pyr_redox_2 PF07992.9 gi|352682469|ref|YP_004892993.1| - 1.3e-13 51.3 0.0 1.8e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|352682469|ref|YP_004892993.1| - 4.4e-06 27.0 0.0 0.15 12.5 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352682469|ref|YP_004892993.1| - 4e-05 22.6 0.0 0.049 12.5 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|352682469|ref|YP_004892993.1| - 0.0016 18.4 0.1 0.015 15.3 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|352682469|ref|YP_004892993.1| - 0.012 15.4 0.3 1 9.1 0.0 2.5 1 1 1 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|352682469|ref|YP_004892993.1| - 0.041 12.5 0.0 0.06 11.9 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_synthase PF02540.12 gi|352682472|ref|YP_004892996.1| - 1e-76 257.0 0.0 1.2e-76 256.8 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|352682472|ref|YP_004892996.1| - 1.2e-05 24.0 0.0 0.01 14.4 0.0 2.4 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|352682472|ref|YP_004892996.1| - 3.6e-05 23.1 0.0 6.7e-05 22.2 0.0 1.4 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|352682472|ref|YP_004892996.1| - 0.0047 16.4 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|352682472|ref|YP_004892996.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 PP-loop family DUF3130 PF11328.3 gi|352682472|ref|YP_004892996.1| - 0.036 14.1 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3130 HTH_23 PF13384.1 gi|352682472|ref|YP_004892996.1| - 0.04 13.5 0.0 0.25 11.0 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain AP_endonuc_2 PF01261.19 gi|352682472|ref|YP_004892996.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel P-II PF00543.17 gi|352682473|ref|YP_004892997.1| - 1.3e-26 93.0 1.0 1.4e-26 92.9 0.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF190 PF02641.10 gi|352682473|ref|YP_004892997.1| - 0.00013 21.7 0.3 0.00017 21.3 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 DUF970 PF06153.6 gi|352682473|ref|YP_004892997.1| - 0.014 15.3 0.6 0.26 11.2 0.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF970) Nit_Regul_Hom PF10126.4 gi|352682473|ref|YP_004892997.1| - 0.076 12.7 0.2 2.8 7.7 0.1 2.1 1 1 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII CaM-KIIN PF15170.1 gi|352682473|ref|YP_004892997.1| - 0.31 11.0 1.4 14 5.7 0.1 2.2 2 0 0 2 2 2 0 Calcium/calmodulin-dependent protein kinase II inhibitor Ammonium_transp PF00909.16 gi|352682474|ref|YP_004892998.1| - 2.2e-70 237.1 26.6 3.2e-70 236.6 18.4 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF87 PF01935.12 gi|352682475|ref|YP_004892999.1| - 1.9e-36 126.0 0.0 2.9e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|352682475|ref|YP_004892999.1| - 2.5e-21 76.4 0.0 1.7e-20 73.6 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|352682475|ref|YP_004892999.1| - 0.00012 21.5 0.0 0.0012 18.4 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|352682475|ref|YP_004892999.1| - 0.0024 17.3 0.0 0.0046 16.4 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|352682475|ref|YP_004892999.1| - 0.033 12.8 0.0 0.069 11.7 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_21 PF13304.1 gi|352682476|ref|YP_004893000.1| - 1.3e-09 38.4 0.0 0.00015 21.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|352682476|ref|YP_004893000.1| - 2.2e-08 34.6 0.0 3.3e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|352682476|ref|YP_004893000.1| - 4.7e-05 22.8 0.0 7.9e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|352682476|ref|YP_004893000.1| - 0.00046 19.4 0.0 0.00064 19.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_tran PF00005.22 gi|352682476|ref|YP_004893000.1| - 0.0043 17.3 0.1 0.027 14.7 0.0 2.0 2 0 0 2 2 2 1 ABC transporter DUF2813 PF11398.3 gi|352682476|ref|YP_004893000.1| - 0.014 14.5 0.1 0.023 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) MutS_V PF00488.16 gi|352682476|ref|YP_004893000.1| - 0.042 13.2 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_16 PF13191.1 gi|352682476|ref|YP_004893000.1| - 0.064 13.2 1.4 1.8 8.5 1.0 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|352682476|ref|YP_004893000.1| - 0.14 12.3 0.1 0.85 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Ammonium_transp PF00909.16 gi|352682477|ref|YP_004893001.1| - 3.4e-90 302.4 31.2 4e-90 302.1 21.6 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF4395 PF14340.1 gi|352682477|ref|YP_004893001.1| - 0.015 15.3 4.1 0.015 15.3 2.8 4.1 2 1 2 4 4 4 0 Domain of unknown function (DUF4395) Metallophos_2 PF12850.2 gi|352682480|ref|YP_004893004.1| - 8.5e-18 64.6 0.0 1.2e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|352682480|ref|YP_004893004.1| - 5.8e-12 45.4 0.0 8.4e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|352682480|ref|YP_004893004.1| - 2e-09 37.0 0.5 7.7e-09 35.0 0.2 1.9 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Thermopsin PF05317.6 gi|352682481|ref|YP_004893005.1| - 3.2e-74 249.2 4.3 9.5e-74 247.6 3.0 1.8 1 0 0 1 1 1 1 Thermopsin SSB PF00436.20 gi|352682481|ref|YP_004893005.1| - 0.00013 21.7 0.4 12 5.7 0.0 5.8 7 0 0 7 7 7 1 Single-strand binding protein family DUF22 PF01629.11 gi|352682481|ref|YP_004893005.1| - 0.00075 18.9 0.0 8.1 5.9 0.0 4.4 4 0 0 4 4 4 1 Domain of unknown function DUF22 MaoC_dehydrat_N PF13452.1 gi|352682481|ref|YP_004893005.1| - 0.025 14.3 0.0 0.98 9.2 0.0 3.5 5 0 0 5 5 5 0 N-terminal half of MaoC dehydratase PsbY PF06298.6 gi|352682481|ref|YP_004893005.1| - 2.4 7.7 14.8 4.5 6.8 0.1 4.9 5 0 0 5 5 5 0 Photosystem II protein Y (PsbY) Yip1 PF04893.12 gi|352682482|ref|YP_004893006.1| - 0.0001 21.8 7.0 0.00013 21.5 4.9 1.3 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|352682482|ref|YP_004893006.1| - 0.0029 17.2 5.6 0.0034 17.0 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) Cation_efflux PF01545.16 gi|352682482|ref|YP_004893006.1| - 0.0041 16.2 2.3 0.0046 16.0 1.6 1.1 1 0 0 1 1 1 1 Cation efflux family DUF2975 PF11188.3 gi|352682482|ref|YP_004893006.1| - 0.31 10.7 4.7 0.37 10.4 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF1656 PF07869.7 gi|352682482|ref|YP_004893006.1| - 0.4 10.5 0.1 0.4 10.5 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1656) TadE PF07811.7 gi|352682482|ref|YP_004893006.1| - 0.73 9.7 7.7 0.3 10.9 3.7 1.6 2 0 0 2 2 2 0 TadE-like protein CAAD PF14159.1 gi|352682482|ref|YP_004893006.1| - 1.8 8.2 4.6 1.2 8.8 2.2 1.4 1 1 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase ATPase_gene1 PF09527.5 gi|352682482|ref|YP_004893006.1| - 2.6 7.9 11.1 0.92 9.3 2.7 2.2 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) AFOR_C PF01314.13 gi|352682483|ref|YP_004893007.1| - 4.7e-99 331.6 0.0 5.7e-99 331.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|352682483|ref|YP_004893007.1| - 1.7e-65 220.1 0.1 3.1e-65 219.3 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Lyase_1 PF00206.15 gi|352682484|ref|YP_004893008.1| - 6.2e-83 278.5 0.0 7.8e-83 278.2 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|352682484|ref|YP_004893008.1| - 0.00012 22.0 0.0 0.0018 18.3 0.0 2.5 2 0 0 2 2 2 1 Fumarase C C-terminus AIRS PF00586.19 gi|352682484|ref|YP_004893008.1| - 0.099 12.8 0.5 5.9 7.2 0.1 2.7 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain Sugar_tr PF00083.19 gi|352682485|ref|YP_004893009.1| - 1.7e-23 82.8 15.4 1.7e-23 82.8 10.7 1.7 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|352682485|ref|YP_004893009.1| - 1.1e-22 80.2 31.6 1.4e-22 79.8 21.9 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|352682486|ref|YP_004893010.1| - 3.7e-05 22.5 4.7 4.1e-05 22.3 3.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter DUF2079 PF09852.4 gi|352682486|ref|YP_004893010.1| - 1.2 7.7 7.3 1.9 7.0 5.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2079) MFS_1 PF07690.11 gi|352682486|ref|YP_004893010.1| - 1.3 7.6 19.9 2 7.0 13.8 1.3 1 1 0 1 1 1 0 Major Facilitator Superfamily Diphthamide_syn PF01866.12 gi|352682487|ref|YP_004893011.1| - 6.1e-25 88.0 0.0 1.9e-15 56.9 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein CoA_binding_2 PF13380.1 gi|352682487|ref|YP_004893011.1| - 0.037 14.2 0.1 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 CoA binding domain Peptidase_M1 PF01433.15 gi|352682488|ref|YP_004893012.1| - 1.6e-96 323.7 0.0 2.1e-96 323.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M1 ERAP1_C PF11838.3 gi|352682488|ref|YP_004893012.1| - 3e-18 66.1 0.0 4.8e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Peptidase_MA_2 PF13485.1 gi|352682488|ref|YP_004893012.1| - 3.2e-15 56.3 0.1 6.6e-15 55.2 0.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily CbiA PF01656.18 gi|352682490|ref|YP_004893014.1| - 3.8e-17 62.3 0.0 5.1e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|352682490|ref|YP_004893014.1| - 1.5e-13 50.9 0.0 2.3e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|352682490|ref|YP_004893014.1| - 1.4e-05 24.3 0.1 0.0028 16.7 0.0 2.2 1 1 1 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|352682490|ref|YP_004893014.1| - 1.5e-05 24.1 1.4 1.7e-05 24.0 0.1 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|352682490|ref|YP_004893014.1| - 0.00046 19.3 0.0 0.00076 18.6 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.13 gi|352682490|ref|YP_004893014.1| - 0.0068 15.6 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|352682490|ref|YP_004893014.1| - 0.008 15.6 0.2 0.045 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|352682490|ref|YP_004893014.1| - 0.041 13.4 0.1 0.22 11.0 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Ribosomal_S3Ae PF01015.13 gi|352682490|ref|YP_004893014.1| - 0.1 11.9 0.4 0.37 10.0 0.1 1.8 1 1 1 2 2 2 0 Ribosomal S3Ae family YhjQ PF06564.7 gi|352682490|ref|YP_004893014.1| - 0.12 11.6 0.2 0.76 9.0 0.1 2.1 2 1 0 2 2 2 0 YhjQ protein DUF2203 PF09969.4 gi|352682490|ref|YP_004893014.1| - 0.16 12.2 0.1 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) ArgK PF03308.11 gi|352682490|ref|YP_004893014.1| - 0.17 10.6 0.1 0.33 9.6 0.0 1.5 2 0 0 2 2 2 0 ArgK protein Pyr_redox PF00070.22 gi|352682491|ref|YP_004893015.1| - 1.9e-18 66.6 3.4 3.3e-18 65.8 0.4 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|352682491|ref|YP_004893015.1| - 8.6e-11 42.0 1.2 1.6e-05 24.8 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|352682491|ref|YP_004893015.1| - 5.1e-07 29.9 0.2 1.6e-06 28.3 0.0 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352682491|ref|YP_004893015.1| - 3.3e-06 26.2 0.8 0.00073 18.5 0.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|352682491|ref|YP_004893015.1| - 3.5e-05 23.2 0.0 5.2e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|352682491|ref|YP_004893015.1| - 5.8e-05 22.8 0.3 7.7e-05 22.4 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|352682491|ref|YP_004893015.1| - 0.0009 18.4 0.1 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|352682491|ref|YP_004893015.1| - 0.0017 17.5 0.1 0.0028 16.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.1 gi|352682491|ref|YP_004893015.1| - 0.002 17.1 0.0 0.0026 16.7 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.13 gi|352682491|ref|YP_004893015.1| - 0.003 17.5 0.1 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain HI0933_like PF03486.9 gi|352682491|ref|YP_004893015.1| - 0.0068 14.9 0.1 0.33 9.3 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein XdhC_C PF13478.1 gi|352682491|ref|YP_004893015.1| - 0.015 15.5 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|352682491|ref|YP_004893015.1| - 0.019 15.2 0.2 0.032 14.4 0.2 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|352682491|ref|YP_004893015.1| - 0.043 13.3 0.2 0.065 12.8 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.10 gi|352682491|ref|YP_004893015.1| - 0.045 13.5 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1188 PF06690.6 gi|352682491|ref|YP_004893015.1| - 0.093 11.8 0.0 0.26 10.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) GIDA PF01134.17 gi|352682491|ref|YP_004893015.1| - 0.099 11.4 0.1 0.63 8.8 0.0 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Saccharop_dh PF03435.13 gi|352682491|ref|YP_004893015.1| - 0.12 11.3 0.1 0.19 10.6 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase Lycopene_cycl PF05834.7 gi|352682491|ref|YP_004893015.1| - 0.12 11.2 0.1 0.21 10.4 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_dim PF02852.17 gi|352682492|ref|YP_004893016.1| - 8.2e-10 38.6 0.0 1.2e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|352682492|ref|YP_004893016.1| - 2.7e-05 24.1 0.0 5.1e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_20 PF00982.16 gi|352682493|ref|YP_004893017.1| - 8.6e-142 472.9 0.0 1.1e-141 472.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.11 gi|352682493|ref|YP_004893017.1| - 1.4e-53 181.2 0.0 2.3e-53 180.5 0.0 1.3 1 0 0 1 1 1 1 Trehalose-phosphatase Glycos_transf_1 PF00534.15 gi|352682493|ref|YP_004893017.1| - 0.014 14.8 0.0 2.2 7.6 0.0 2.5 2 0 0 2 2 2 0 Glycosyl transferases group 1 Hydrolase_3 PF08282.7 gi|352682493|ref|YP_004893017.1| - 0.019 14.5 0.0 0.042 13.4 0.0 1.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|352682493|ref|YP_004893017.1| - 0.031 13.5 0.0 0.13 11.5 0.0 1.9 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Glyco_transf_5 PF08323.6 gi|352682493|ref|YP_004893017.1| - 0.14 11.6 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|352682494|ref|YP_004893018.1| - 3e-11 43.0 0.0 7.7e-11 41.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352682494|ref|YP_004893018.1| - 4.1e-08 33.4 0.4 1.9e-07 31.3 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|352682494|ref|YP_004893018.1| - 1.4e-05 25.3 3.6 1.4e-05 25.3 2.5 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|352682494|ref|YP_004893018.1| - 0.0034 17.1 0.0 0.0099 15.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|352682494|ref|YP_004893018.1| - 0.0089 16.2 0.0 0.023 14.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1129 PF06570.6 gi|352682495|ref|YP_004893019.1| - 4 6.6 7.4 3.6 6.8 4.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) TM_helix PF05552.7 gi|352682495|ref|YP_004893019.1| - 8.9 6.0 13.7 0.14 11.8 0.5 3.4 3 1 0 3 3 3 0 Conserved TM helix Class_IIIsignal PF04021.7 gi|352682496|ref|YP_004893020.1| - 8.1e-06 25.3 2.2 1.8e-05 24.3 0.2 2.4 2 0 0 2 2 2 1 Class III signal peptide HEPN PF05168.9 gi|352682498|ref|YP_004893022.1| - 1.2e-35 121.8 0.0 1.4e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|352682498|ref|YP_004893022.1| - 0.007 16.2 1.4 0.015 15.1 0.7 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|352682499|ref|YP_004893023.1| - 1.5e-08 34.8 0.0 1.9e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|352682499|ref|YP_004893023.1| - 0.0027 17.3 0.1 0.007 15.9 0.0 1.7 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 DUF3227 PF11537.3 gi|352682500|ref|YP_004893024.1| - 0.032 14.3 0.1 0.035 14.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3227) DUF504 PF04457.7 gi|352682501|ref|YP_004893025.1| - 5.3e-14 52.1 0.2 6.6e-14 51.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) ThiW PF09512.5 gi|352682502|ref|YP_004893026.1| - 2e-35 121.8 15.4 2.3e-35 121.6 10.7 1.0 1 0 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) DUF3816 PF12822.2 gi|352682502|ref|YP_004893026.1| - 0.45 10.3 20.0 1.7 8.5 13.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) AAA_10 PF12846.2 gi|352682503|ref|YP_004893027.1| - 0.00025 20.6 0.1 0.00025 20.6 0.1 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|352682503|ref|YP_004893027.1| - 0.0049 16.8 0.0 0.0055 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.8 gi|352682503|ref|YP_004893027.1| - 0.01 14.7 0.1 0.015 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_29 PF13555.1 gi|352682503|ref|YP_004893027.1| - 0.037 13.5 0.1 0.07 12.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|352682503|ref|YP_004893027.1| - 0.05 13.0 0.1 0.08 12.4 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|352682503|ref|YP_004893027.1| - 0.07 12.9 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|352682503|ref|YP_004893027.1| - 0.072 11.7 0.0 0.1 11.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|352682503|ref|YP_004893027.1| - 0.087 12.5 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|352682503|ref|YP_004893027.1| - 0.1 12.7 0.0 0.16 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|352682503|ref|YP_004893027.1| - 0.17 11.8 0.1 0.39 10.6 0.0 1.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|352682504|ref|YP_004893028.1| - 9.4e-21 74.5 0.4 1.3e-07 31.9 0.0 4.1 3 1 0 3 3 3 3 ABC transporter AAA_21 PF13304.1 gi|352682504|ref|YP_004893028.1| - 2.9e-20 73.4 0.0 6.7e-07 29.5 0.0 4.1 2 2 2 4 4 4 4 AAA domain SMC_N PF02463.14 gi|352682504|ref|YP_004893028.1| - 7.8e-07 28.5 0.0 0.23 10.6 0.0 3.9 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|352682504|ref|YP_004893028.1| - 1.7e-06 27.4 0.1 0.0036 16.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|352682504|ref|YP_004893028.1| - 1.8e-06 27.5 0.1 0.097 12.0 0.0 3.4 4 0 0 4 4 4 2 AAA domain AAA_22 PF13401.1 gi|352682504|ref|YP_004893028.1| - 8.8e-06 25.8 0.0 0.04 14.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|352682504|ref|YP_004893028.1| - 2.2e-05 24.1 1.2 0.0029 17.3 0.3 2.9 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|352682504|ref|YP_004893028.1| - 2.5e-05 24.3 0.6 0.12 12.3 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|352682504|ref|YP_004893028.1| - 0.00013 22.1 0.0 0.42 10.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|352682504|ref|YP_004893028.1| - 0.00044 20.6 0.1 0.027 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|352682504|ref|YP_004893028.1| - 0.00061 19.4 2.1 0.8 9.2 0.2 3.3 4 0 0 4 4 4 2 AAA domain IstB_IS21 PF01695.12 gi|352682504|ref|YP_004893028.1| - 0.00076 18.9 1.2 0.94 8.8 0.1 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein UPF0079 PF02367.12 gi|352682504|ref|YP_004893028.1| - 0.0011 18.5 0.1 0.15 11.7 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|352682504|ref|YP_004893028.1| - 0.0012 18.2 2.4 1.4 8.2 0.1 3.1 2 2 1 4 4 4 2 AAA-like domain AAA_17 PF13207.1 gi|352682504|ref|YP_004893028.1| - 0.0013 19.5 0.7 0.26 12.1 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|352682504|ref|YP_004893028.1| - 0.0024 17.7 0.0 0.14 12.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|352682504|ref|YP_004893028.1| - 0.0024 16.8 0.2 0.6 8.9 0.1 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_28 PF13521.1 gi|352682504|ref|YP_004893028.1| - 0.005 16.8 0.4 0.94 9.4 0.3 2.5 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|352682504|ref|YP_004893028.1| - 0.009 15.9 0.0 0.68 9.8 0.0 2.6 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|352682504|ref|YP_004893028.1| - 0.01 15.5 0.0 4.5 6.9 0.0 2.2 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|352682504|ref|YP_004893028.1| - 0.019 14.0 0.4 0.97 8.4 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.1 gi|352682504|ref|YP_004893028.1| - 0.022 15.0 1.4 2.4 8.4 0.0 3.1 2 1 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|352682504|ref|YP_004893028.1| - 0.023 13.9 1.2 1.5 7.9 0.2 2.2 2 0 0 2 2 2 0 PhoH-like protein Arch_ATPase PF01637.13 gi|352682504|ref|YP_004893028.1| - 0.045 13.4 0.1 0.83 9.3 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|352682504|ref|YP_004893028.1| - 0.048 12.8 0.5 0.45 9.6 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|352682504|ref|YP_004893028.1| - 0.051 13.4 0.0 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|352682504|ref|YP_004893028.1| - 0.084 11.4 0.9 0.67 8.5 0.1 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF258 PF03193.11 gi|352682504|ref|YP_004893028.1| - 0.12 11.6 0.0 0.31 10.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|352682504|ref|YP_004893028.1| - 0.13 11.9 1.5 4.8 6.9 0.1 2.8 3 1 0 3 3 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|352682504|ref|YP_004893028.1| - 0.16 11.4 0.2 14 5.1 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family MobB PF03205.9 gi|352682504|ref|YP_004893028.1| - 0.17 11.6 0.6 3.9 7.1 0.1 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|352682504|ref|YP_004893028.1| - 0.69 9.3 2.8 4 6.8 0.2 2.4 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain DoxX_3 PF13781.1 gi|352682505|ref|YP_004893029.1| - 1.1 9.6 12.6 0.19 12.0 6.1 1.8 2 0 0 2 2 2 0 DoxX-like family DAO PF01266.19 gi|352682506|ref|YP_004893030.1| - 2.4e-38 131.9 2.2 3.3e-38 131.5 1.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|352682506|ref|YP_004893030.1| - 1.4e-07 31.5 0.2 0.00034 20.5 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|352682506|ref|YP_004893030.1| - 3e-07 30.3 0.2 6.6e-07 29.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|352682506|ref|YP_004893030.1| - 1.4e-06 27.4 0.1 0.015 14.2 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|352682506|ref|YP_004893030.1| - 2.9e-06 26.4 0.4 9.3e-06 24.7 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|352682506|ref|YP_004893030.1| - 2.1e-05 24.8 0.2 5e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|352682506|ref|YP_004893030.1| - 3.3e-05 23.1 0.3 5.1e-05 22.4 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|352682506|ref|YP_004893030.1| - 7.8e-05 21.8 0.2 7.8e-05 21.8 0.1 1.8 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|352682506|ref|YP_004893030.1| - 0.00066 18.8 0.0 0.001 18.2 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|352682506|ref|YP_004893030.1| - 0.00082 17.9 0.2 0.0015 17.1 0.0 1.5 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|352682506|ref|YP_004893030.1| - 0.0024 17.9 0.0 0.028 14.4 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352682506|ref|YP_004893030.1| - 0.0037 17.0 0.6 0.29 10.8 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|352682506|ref|YP_004893030.1| - 0.0073 15.2 1.2 0.025 13.4 0.5 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|352682506|ref|YP_004893030.1| - 0.014 15.0 0.1 0.023 14.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|352682506|ref|YP_004893030.1| - 0.017 14.5 0.1 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|352682506|ref|YP_004893030.1| - 0.05 12.2 0.9 0.089 11.3 0.2 1.6 2 0 0 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.19 gi|352682506|ref|YP_004893030.1| - 0.076 12.0 0.0 0.29 10.1 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|352682506|ref|YP_004893030.1| - 0.085 12.2 0.1 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|352682506|ref|YP_004893030.1| - 0.17 12.1 0.5 0.28 11.4 0.0 1.7 2 0 0 2 2 1 0 Putative NAD(P)-binding Malate_synthase PF01274.17 gi|352682507|ref|YP_004893031.1| - 4.3e-40 137.2 0.0 2.7e-36 124.7 0.0 2.1 2 0 0 2 2 2 2 Malate synthase HpcH_HpaI PF03328.9 gi|352682507|ref|YP_004893031.1| - 0.055 12.3 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family FAD-oxidase_C PF02913.14 gi|352682508|ref|YP_004893032.1| - 1.1e-44 152.6 0.0 2.2e-44 151.6 0.0 1.5 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|352682508|ref|YP_004893032.1| - 9.8e-35 119.0 0.3 2.1e-34 117.9 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain AP_endonuc_2 PF01261.19 gi|352682508|ref|YP_004893032.1| - 0.053 12.7 0.0 0.23 10.7 0.0 2.1 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Fer4_8 PF13183.1 gi|352682509|ref|YP_004893033.1| - 8.8e-11 41.6 4.7 1.1e-10 41.3 3.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352682509|ref|YP_004893033.1| - 4.6e-09 36.5 4.5 6.2e-09 36.0 3.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682509|ref|YP_004893033.1| - 1.5e-08 34.2 15.8 2.8e-07 30.2 4.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352682509|ref|YP_004893033.1| - 5.1e-07 29.9 6.5 9.3e-07 29.1 4.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352682509|ref|YP_004893033.1| - 4.7e-06 25.9 13.6 0.00025 20.4 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352682509|ref|YP_004893033.1| - 2.4e-05 24.5 7.8 0.00011 22.4 5.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|352682509|ref|YP_004893033.1| - 5.7e-05 22.6 3.2 0.007 15.9 0.1 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.1 gi|352682509|ref|YP_004893033.1| - 8.7e-05 22.8 10.2 0.0011 19.3 3.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352682509|ref|YP_004893033.1| - 0.00041 20.1 11.9 0.029 14.2 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352682509|ref|YP_004893033.1| - 0.00048 19.9 3.8 0.18 11.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352682509|ref|YP_004893033.1| - 0.0011 18.7 1.4 0.0011 18.7 1.0 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|352682509|ref|YP_004893033.1| - 0.009 16.5 4.3 1.5 9.3 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|352682509|ref|YP_004893033.1| - 0.026 15.2 10.7 0.18 12.5 7.8 1.9 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|352682509|ref|YP_004893033.1| - 0.16 12.3 11.3 0.52 10.7 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain A2L_zn_ribbon PF08792.5 gi|352682509|ref|YP_004893033.1| - 0.29 10.6 9.9 0.64 9.5 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Fer4_13 PF13370.1 gi|352682509|ref|YP_004893033.1| - 1.1 9.6 9.3 2.5 8.5 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|352682509|ref|YP_004893033.1| - 1.2 9.9 16.2 1.6 9.5 1.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain zf-ribbon_3 PF13248.1 gi|352682509|ref|YP_004893033.1| - 4.7 6.5 10.6 6.9 6.0 0.5 2.8 2 1 0 2 2 2 0 zinc-ribbon domain CCG PF02754.11 gi|352682510|ref|YP_004893034.1| - 6.9e-09 35.6 0.0 6e-05 22.9 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Lactate_perm PF02652.9 gi|352682511|ref|YP_004893035.1| - 1.4e-97 327.3 45.7 1.9e-97 326.9 31.7 1.1 1 0 0 1 1 1 1 L-lactate permease CoA_binding_2 PF13380.1 gi|352682512|ref|YP_004893036.1| - 7.5e-35 119.6 0.2 8.4e-35 119.4 0.1 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|352682512|ref|YP_004893036.1| - 5.7e-06 26.7 0.0 9.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain zf-CDGSH PF09360.5 gi|352682513|ref|YP_004893037.1| - 8e-18 63.9 0.4 9.7e-18 63.7 0.3 1.1 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type Nitro_FeMo-Co PF02579.12 gi|352682514|ref|YP_004893038.1| - 8.8e-09 35.3 0.0 2.8e-08 33.7 0.0 1.7 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF488 PF04343.8 gi|352682514|ref|YP_004893038.1| - 0.099 13.0 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF488 Gryzun-like PF12742.2 gi|352682515|ref|YP_004893039.1| - 0.11 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Gryzun, putative Golgi trafficking Glycos_transf_1 PF00534.15 gi|352682516|ref|YP_004893040.1| - 4.1e-13 49.0 0.0 6.2e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352682516|ref|YP_004893040.1| - 2.2e-10 40.7 0.1 5.1e-10 39.6 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|352682516|ref|YP_004893040.1| - 0.00079 19.5 9.5 0.0069 16.5 0.1 2.4 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|352682516|ref|YP_004893040.1| - 0.0038 16.9 0.0 0.01 15.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 DUF218 PF02698.12 gi|352682516|ref|YP_004893040.1| - 0.029 13.8 0.4 0.054 12.9 0.2 1.6 1 1 0 1 1 1 0 DUF218 domain PMBR PF09373.5 gi|352682516|ref|YP_004893040.1| - 0.049 13.5 0.0 0.26 11.2 0.0 2.2 2 0 0 2 2 2 0 Pseudomurein-binding repeat Glycos_transf_2 PF00535.21 gi|352682517|ref|YP_004893041.1| - 1.5e-23 83.2 0.1 7.3e-23 81.0 0.0 2.2 1 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352682517|ref|YP_004893041.1| - 3e-16 59.9 0.0 1e-15 58.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|352682517|ref|YP_004893041.1| - 0.003 17.3 2.3 0.35 10.5 1.6 2.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|352682517|ref|YP_004893041.1| - 0.0073 15.4 0.0 0.017 14.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|352682517|ref|YP_004893041.1| - 0.032 13.4 0.0 0.06 12.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family Glycos_transf_1 PF00534.15 gi|352682519|ref|YP_004893043.1| - 6e-14 51.8 0.0 2.7e-13 49.7 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352682519|ref|YP_004893043.1| - 5.3e-10 39.5 0.3 1.6e-09 38.0 0.2 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|352682519|ref|YP_004893043.1| - 0.004 16.9 0.0 0.011 15.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|352682519|ref|YP_004893043.1| - 0.07 13.4 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 Arch_ATPase PF01637.13 gi|352682520|ref|YP_004893044.1| - 5.8e-19 68.7 0.0 5.5e-18 65.5 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|352682520|ref|YP_004893044.1| - 1.3e-09 38.2 0.0 2.6e-08 34.0 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|352682520|ref|YP_004893044.1| - 4.6e-08 33.3 0.0 1e-07 32.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|352682520|ref|YP_004893044.1| - 5.3e-08 33.0 0.0 9.2e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352682520|ref|YP_004893044.1| - 3.9e-05 24.4 0.3 9.2e-05 23.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|352682520|ref|YP_004893044.1| - 6.6e-05 22.5 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_14 PF13173.1 gi|352682520|ref|YP_004893044.1| - 0.00031 20.6 0.0 0.0015 18.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|352682520|ref|YP_004893044.1| - 0.00033 20.3 0.0 0.0005 19.7 0.0 1.4 1 1 0 1 1 1 1 NACHT domain AAA_18 PF13238.1 gi|352682520|ref|YP_004893044.1| - 0.00051 20.3 0.2 0.0021 18.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352682520|ref|YP_004893044.1| - 0.00063 19.4 0.1 0.0029 17.3 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_28 PF13521.1 gi|352682520|ref|YP_004893044.1| - 0.00095 19.1 0.1 0.002 18.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|352682520|ref|YP_004893044.1| - 0.0015 18.3 0.0 0.0027 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|352682520|ref|YP_004893044.1| - 0.0033 17.0 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial dnaA protein RuvB_N PF05496.7 gi|352682520|ref|YP_004893044.1| - 0.0037 16.3 0.0 0.11 11.4 0.0 2.5 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|352682520|ref|YP_004893044.1| - 0.0054 16.6 0.1 0.014 15.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_10 PF12846.2 gi|352682520|ref|YP_004893044.1| - 0.0061 16.0 0.5 1.1 8.5 0.0 2.5 2 1 1 3 3 3 1 AAA-like domain NB-ARC PF00931.17 gi|352682520|ref|YP_004893044.1| - 0.021 13.7 0.0 0.033 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_31 PF13614.1 gi|352682520|ref|YP_004893044.1| - 0.021 14.7 0.0 0.062 13.2 0.0 1.8 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|352682520|ref|YP_004893044.1| - 0.025 14.0 0.0 0.12 11.8 0.0 2.1 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|352682520|ref|YP_004893044.1| - 0.029 13.9 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|352682520|ref|YP_004893044.1| - 0.054 13.0 0.0 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|352682520|ref|YP_004893044.1| - 0.057 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KAP_NTPase PF07693.9 gi|352682520|ref|YP_004893044.1| - 0.062 12.2 0.0 0.086 11.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Mg_chelatase PF01078.16 gi|352682520|ref|YP_004893044.1| - 0.093 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ResIII PF04851.10 gi|352682520|ref|YP_004893044.1| - 0.095 12.5 0.1 2.9 7.7 0.0 2.2 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|352682520|ref|YP_004893044.1| - 0.12 11.3 0.0 0.26 10.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NUDIX PF00293.23 gi|352682522|ref|YP_004893046.1| - 4.3e-20 71.7 0.4 8e-20 70.8 0.1 1.5 2 0 0 2 2 2 1 NUDIX domain NPV_P10 PF05531.7 gi|352682523|ref|YP_004893047.1| - 5.2e-07 29.8 6.6 0.0095 16.1 0.3 2.9 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein Syntaxin PF00804.20 gi|352682523|ref|YP_004893047.1| - 9.7e-07 28.9 1.0 1.6e-06 28.1 0.7 1.5 1 0 0 1 1 1 1 Syntaxin Snapin_Pallidin PF14712.1 gi|352682523|ref|YP_004893047.1| - 1.9e-05 24.9 2.1 0.08 13.2 2.3 2.3 1 1 1 2 2 2 2 Snapin/Pallidin Matrilin_ccoil PF10393.4 gi|352682523|ref|YP_004893047.1| - 2.8e-05 23.3 2.7 0.021 14.2 0.0 3.1 1 1 1 2 2 2 1 Trimeric coiled-coil oligomerisation domain of matrilin Prefoldin_3 PF13758.1 gi|352682523|ref|YP_004893047.1| - 0.0002 21.0 4.9 0.015 15.0 0.8 2.3 1 1 1 2 2 2 1 Prefoldin subunit Baculo_PEP_C PF04513.7 gi|352682523|ref|YP_004893047.1| - 0.00024 20.9 3.3 0.00037 20.3 2.2 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3552 PF12072.3 gi|352682523|ref|YP_004893047.1| - 0.00077 18.7 2.1 0.001 18.3 1.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) FliD_C PF07195.7 gi|352682523|ref|YP_004893047.1| - 0.00089 18.6 1.6 0.0022 17.3 0.4 1.9 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus HSBP1 PF06825.7 gi|352682523|ref|YP_004893047.1| - 0.00099 18.6 3.0 0.29 10.7 0.2 2.6 1 1 1 2 2 2 2 Heat shock factor binding protein 1 HOOK PF05622.7 gi|352682523|ref|YP_004893047.1| - 0.0015 16.4 0.9 0.0016 16.3 0.6 1.1 1 0 0 1 1 1 1 HOOK protein Phage_GPO PF05929.6 gi|352682523|ref|YP_004893047.1| - 0.0026 17.0 0.4 0.0037 16.5 0.3 1.2 1 0 0 1 1 1 1 Phage capsid scaffolding protein (GPO) serine peptidase HalX PF08663.5 gi|352682523|ref|YP_004893047.1| - 0.0027 17.6 7.1 0.051 13.5 0.2 3.1 2 1 1 3 3 2 1 HalX domain DUF1515 PF07439.6 gi|352682523|ref|YP_004893047.1| - 0.0027 17.4 2.2 0.011 15.5 1.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1515) Phasin PF05597.6 gi|352682523|ref|YP_004893047.1| - 0.0031 17.2 3.0 1.1 9.0 0.1 2.3 1 1 1 2 2 2 2 Poly(hydroxyalcanoate) granule associated protein (phasin) ApoLp-III PF07464.6 gi|352682523|ref|YP_004893047.1| - 0.0033 17.4 0.9 0.009 16.0 0.1 1.8 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) MtrG PF04210.8 gi|352682523|ref|YP_004893047.1| - 0.004 16.7 2.0 0.12 12.0 0.1 3.0 2 1 2 4 4 3 1 Tetrahydromethanopterin S-methyltransferase, subunit G DUF1664 PF07889.7 gi|352682523|ref|YP_004893047.1| - 0.0047 16.7 5.1 0.038 13.7 1.8 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Prefoldin_2 PF01920.15 gi|352682523|ref|YP_004893047.1| - 0.0048 16.6 5.4 0.012 15.3 0.3 2.5 2 1 1 3 3 2 1 Prefoldin subunit AAA_13 PF13166.1 gi|352682523|ref|YP_004893047.1| - 0.006 15.1 0.3 0.0069 14.9 0.2 1.2 1 0 0 1 1 1 1 AAA domain Allexi_40kDa PF05549.6 gi|352682523|ref|YP_004893047.1| - 0.007 15.6 0.4 0.0087 15.3 0.3 1.2 1 0 0 1 1 1 1 Allexivirus 40kDa protein Lebercilin PF15619.1 gi|352682523|ref|YP_004893047.1| - 0.0078 15.6 0.2 0.014 14.8 0.2 1.5 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Atg14 PF10186.4 gi|352682523|ref|YP_004893047.1| - 0.0078 15.1 1.9 0.0086 15.0 1.3 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Nup54 PF13874.1 gi|352682523|ref|YP_004893047.1| - 0.008 15.8 3.8 0.026 14.2 2.6 1.8 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 DUF3584 PF12128.3 gi|352682523|ref|YP_004893047.1| - 0.0081 13.5 1.4 0.0084 13.5 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Uds1 PF15456.1 gi|352682523|ref|YP_004893047.1| - 0.0084 16.1 1.7 0.028 14.4 1.2 1.8 1 1 0 1 1 1 1 Up-regulated During Septation DivIC PF04977.10 gi|352682523|ref|YP_004893047.1| - 0.012 15.0 3.7 0.45 10.0 1.8 3.0 1 1 0 1 1 1 0 Septum formation initiator MCPsignal PF00015.16 gi|352682523|ref|YP_004893047.1| - 0.012 15.1 0.5 0.015 14.8 0.4 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Spc7 PF08317.6 gi|352682523|ref|YP_004893047.1| - 0.012 14.2 2.9 0.015 13.9 2.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2959 PF11172.3 gi|352682523|ref|YP_004893047.1| - 0.013 15.2 0.3 0.51 10.0 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Transposase_22 PF02994.9 gi|352682523|ref|YP_004893047.1| - 0.015 13.8 1.1 0.017 13.6 0.8 1.1 1 0 0 1 1 1 0 L1 transposable element ZapA PF05164.8 gi|352682523|ref|YP_004893047.1| - 0.015 15.2 0.8 0.16 11.9 0.5 2.2 1 1 0 1 1 1 0 Cell division protein ZapA DUF4164 PF13747.1 gi|352682523|ref|YP_004893047.1| - 0.018 15.1 6.9 0.018 15.1 4.8 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4164) DUF3450 PF11932.3 gi|352682523|ref|YP_004893047.1| - 0.018 14.2 0.5 0.03 13.6 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) UPF0184 PF03670.8 gi|352682523|ref|YP_004893047.1| - 0.02 15.0 1.9 3.4 7.9 0.2 2.8 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0184) Peripla_BP_2 PF01497.13 gi|352682523|ref|YP_004893047.1| - 0.022 13.8 2.8 0.39 9.8 0.3 2.2 1 1 1 2 2 2 0 Periplasmic binding protein DUF2450 PF10475.4 gi|352682523|ref|YP_004893047.1| - 0.023 13.5 0.7 0.027 13.3 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) RmuC PF02646.11 gi|352682523|ref|YP_004893047.1| - 0.024 13.4 1.6 0.042 12.6 0.9 1.5 1 1 1 2 2 2 0 RmuC family DUF554 PF04474.7 gi|352682523|ref|YP_004893047.1| - 0.025 13.7 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF554) DUF2130 PF09903.4 gi|352682523|ref|YP_004893047.1| - 0.026 13.2 0.3 0.034 12.9 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) Apolipoprotein PF01442.13 gi|352682523|ref|YP_004893047.1| - 0.026 14.0 3.4 1.9 7.9 0.2 2.1 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain T4SS PF07996.6 gi|352682523|ref|YP_004893047.1| - 0.027 14.3 0.1 0.032 14.1 0.1 1.1 1 0 0 1 1 1 0 Type IV secretion system proteins DUF3829 PF12889.2 gi|352682523|ref|YP_004893047.1| - 0.027 13.6 0.0 0.12 11.5 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) Reo_sigmaC PF04582.7 gi|352682523|ref|YP_004893047.1| - 0.027 13.6 0.8 0.054 12.6 0.6 1.6 1 1 0 1 1 1 0 Reovirus sigma C capsid protein DUF2730 PF10805.3 gi|352682523|ref|YP_004893047.1| - 0.027 14.2 2.2 0.35 10.6 0.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Seryl_tRNA_N PF02403.17 gi|352682523|ref|YP_004893047.1| - 0.03 14.3 3.7 0.13 12.3 2.5 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF2884 PF11101.3 gi|352682523|ref|YP_004893047.1| - 0.03 13.6 0.3 0.21 10.9 0.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) DUF869 PF05911.6 gi|352682523|ref|YP_004893047.1| - 0.03 12.5 1.0 0.032 12.4 0.7 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) BLOC1_2 PF10046.4 gi|352682523|ref|YP_004893047.1| - 0.033 14.3 2.8 0.45 10.6 1.7 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.6 gi|352682523|ref|YP_004893047.1| - 0.035 13.9 1.8 0.26 11.1 1.2 2.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) MtrB PF05440.7 gi|352682523|ref|YP_004893047.1| - 0.035 14.1 0.8 11 6.1 0.0 3.0 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF148 PF02520.12 gi|352682523|ref|YP_004893047.1| - 0.035 13.8 0.3 0.054 13.2 0.1 1.4 2 0 0 2 2 1 0 Domain of unknown function DUF148 Spectrin PF00435.16 gi|352682523|ref|YP_004893047.1| - 0.036 14.3 0.8 0.14 12.4 0.5 2.0 1 1 0 1 1 1 0 Spectrin repeat Syntaxin-6_N PF09177.6 gi|352682523|ref|YP_004893047.1| - 0.037 14.4 2.1 0.077 13.4 1.1 1.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Fib_alpha PF08702.5 gi|352682523|ref|YP_004893047.1| - 0.041 14.0 2.0 0.051 13.6 1.2 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Prefoldin PF02996.12 gi|352682523|ref|YP_004893047.1| - 0.044 13.4 2.6 1.2 8.7 0.2 2.4 1 1 1 2 2 2 0 Prefoldin subunit Bap31 PF05529.7 gi|352682523|ref|YP_004893047.1| - 0.047 13.1 0.0 0.069 12.5 0.0 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like MbeD_MobD PF04899.7 gi|352682523|ref|YP_004893047.1| - 0.05 13.5 0.6 9.5 6.2 0.0 2.4 1 1 0 2 2 2 0 MbeD/MobD like DUF4613 PF15390.1 gi|352682523|ref|YP_004893047.1| - 0.056 11.6 0.1 0.056 11.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) IncA PF04156.9 gi|352682523|ref|YP_004893047.1| - 0.056 13.0 2.9 0.11 12.1 1.8 1.4 1 1 0 1 1 1 0 IncA protein Hemerythrin PF01814.18 gi|352682523|ref|YP_004893047.1| - 0.059 13.5 0.4 5.8 7.0 0.0 2.1 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Laminin_II PF06009.7 gi|352682523|ref|YP_004893047.1| - 0.065 12.9 4.7 0.11 12.2 1.8 2.2 1 1 1 2 2 2 0 Laminin Domain II Ran-binding PF05508.6 gi|352682523|ref|YP_004893047.1| - 0.079 11.8 1.1 0.087 11.7 0.8 1.1 1 0 0 1 1 1 0 RanGTP-binding protein Vip3A_N PF12495.3 gi|352682523|ref|YP_004893047.1| - 0.079 12.6 0.4 0.12 12.0 0.3 1.4 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal Flagellin_C PF00700.16 gi|352682523|ref|YP_004893047.1| - 0.081 13.0 2.3 1.4 9.1 1.4 2.4 1 1 0 1 1 1 0 Bacterial flagellin C-terminal helical region TACC PF05010.9 gi|352682523|ref|YP_004893047.1| - 0.086 12.6 1.0 0.094 12.4 0.7 1.1 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) THOC7 PF05615.8 gi|352682523|ref|YP_004893047.1| - 0.086 13.1 1.8 0.15 12.2 1.3 1.6 1 1 0 1 1 1 0 Tho complex subunit 7 Cortex-I_coil PF09304.5 gi|352682523|ref|YP_004893047.1| - 0.087 12.8 4.6 1.2 9.2 0.5 2.2 1 1 1 2 2 2 0 Cortexillin I, coiled coil Corona_S2 PF01601.11 gi|352682523|ref|YP_004893047.1| - 0.089 10.8 0.3 0.093 10.8 0.2 1.1 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein Transcrip_act PF04949.8 gi|352682523|ref|YP_004893047.1| - 0.09 12.4 3.1 0.25 10.9 2.2 1.9 1 1 0 1 1 1 0 Transcriptional activator V_ATPase_I PF01496.14 gi|352682523|ref|YP_004893047.1| - 0.092 10.5 0.5 0.095 10.5 0.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.3 gi|352682523|ref|YP_004893047.1| - 0.096 12.5 4.2 1.2 9.0 0.4 3.1 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Hemagglutinin PF00509.13 gi|352682523|ref|YP_004893047.1| - 0.099 10.7 1.3 0.17 9.9 0.9 1.3 1 1 0 1 1 1 0 Haemagglutinin FlxA PF14282.1 gi|352682523|ref|YP_004893047.1| - 0.1 12.5 2.1 0.18 11.7 1.5 1.4 1 0 0 1 1 1 0 FlxA-like protein Fmp27_WPPW PF10359.4 gi|352682523|ref|YP_004893047.1| - 0.1 11.0 1.8 0.13 10.6 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain COG2 PF06148.6 gi|352682523|ref|YP_004893047.1| - 0.1 12.4 2.9 0.7 9.7 0.8 2.5 1 1 1 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DivIVA PF05103.8 gi|352682523|ref|YP_004893047.1| - 0.1 12.6 2.0 5.9 6.9 0.3 2.4 2 1 1 3 3 2 0 DivIVA protein Tho2 PF11262.3 gi|352682523|ref|YP_004893047.1| - 0.11 11.5 0.7 0.13 11.2 0.3 1.3 1 1 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 DUF1484 PF07363.6 gi|352682523|ref|YP_004893047.1| - 0.11 12.8 1.3 0.19 12.1 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1484) FemAB PF02388.11 gi|352682523|ref|YP_004893047.1| - 0.11 11.1 0.6 0.14 10.8 0.4 1.1 1 0 0 1 1 1 0 FemAB family AF0941-like PF14591.1 gi|352682523|ref|YP_004893047.1| - 0.11 12.5 1.8 0.26 11.3 1.2 1.6 1 1 0 1 1 1 0 AF0941-like Laminin_I PF06008.9 gi|352682523|ref|YP_004893047.1| - 0.12 11.7 5.1 0.025 13.9 1.2 1.6 2 0 0 2 2 1 0 Laminin Domain I bZIP_1 PF00170.16 gi|352682523|ref|YP_004893047.1| - 0.12 12.2 0.4 6.6 6.7 0.0 2.4 1 1 1 2 2 2 0 bZIP transcription factor WXG100 PF06013.7 gi|352682523|ref|YP_004893047.1| - 0.13 12.3 2.3 4.6 7.3 0.5 3.0 3 1 0 3 3 2 0 Proteins of 100 residues with WXG MscS_porin PF12795.2 gi|352682523|ref|YP_004893047.1| - 0.13 11.5 5.3 1.5 8.0 0.4 2.2 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain TMPIT PF07851.8 gi|352682523|ref|YP_004893047.1| - 0.14 11.2 0.1 0.17 10.9 0.1 1.1 1 0 0 1 1 1 0 TMPIT-like protein HSCB_C PF07743.8 gi|352682523|ref|YP_004893047.1| - 0.14 12.6 2.6 1 9.8 0.5 2.4 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain FlaC_arch PF05377.6 gi|352682523|ref|YP_004893047.1| - 0.15 11.9 1.9 4.9 7.1 0.4 2.8 1 1 2 3 3 2 0 Flagella accessory protein C (FlaC) DUF4254 PF14063.1 gi|352682523|ref|YP_004893047.1| - 0.18 11.3 5.4 0.28 10.7 2.7 2.0 2 1 0 2 2 1 0 Protein of unknown function (DUF4254) CorA PF01544.13 gi|352682523|ref|YP_004893047.1| - 0.18 10.7 5.1 0.44 9.5 2.6 1.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|352682523|ref|YP_004893047.1| - 0.19 11.3 1.3 0.54 9.9 0.7 1.9 1 1 1 2 2 2 0 Mnd1 family HR1 PF02185.11 gi|352682523|ref|YP_004893047.1| - 0.21 11.3 1.5 3.6 7.4 0.7 2.5 1 1 1 2 2 2 0 Hr1 repeat Occludin_ELL PF07303.8 gi|352682523|ref|YP_004893047.1| - 0.24 12.1 2.0 6.7 7.5 0.1 2.6 2 1 2 4 4 3 0 Occludin homology domain LUC7 PF03194.10 gi|352682523|ref|YP_004893047.1| - 0.25 10.8 2.3 0.31 10.5 1.6 1.4 1 1 0 1 1 1 0 LUC7 N_terminus TBPIP PF07106.8 gi|352682523|ref|YP_004893047.1| - 0.29 10.6 2.6 0.77 9.2 1.8 1.8 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) WASH_WAHD PF11945.3 gi|352682523|ref|YP_004893047.1| - 0.31 10.2 3.4 0.38 10.0 2.0 1.4 1 1 0 1 1 1 0 WAHD domain of WASH complex Acyl-CoA_dh_2 PF08028.6 gi|352682523|ref|YP_004893047.1| - 0.31 11.2 2.0 2.9 8.1 1.0 2.3 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain PEP-utilisers_N PF05524.8 gi|352682523|ref|YP_004893047.1| - 0.36 10.6 5.3 5.4 6.8 0.1 2.8 1 1 2 3 3 3 0 PEP-utilising enzyme, N-terminal DUF4140 PF13600.1 gi|352682523|ref|YP_004893047.1| - 0.5 10.8 4.8 8 6.9 3.3 2.3 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF2732 PF10809.3 gi|352682523|ref|YP_004893047.1| - 0.52 9.8 2.5 0.76 9.3 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2732) Med4 PF10018.4 gi|352682523|ref|YP_004893047.1| - 0.57 9.5 2.7 2.2 7.6 1.1 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 SlyX PF04102.7 gi|352682523|ref|YP_004893047.1| - 0.59 10.5 6.8 3.8 7.9 2.2 2.9 2 1 0 2 2 1 0 SlyX KH_5 PF13184.1 gi|352682523|ref|YP_004893047.1| - 0.61 9.9 2.6 0.67 9.7 0.3 2.3 2 1 1 3 3 2 0 NusA-like KH domain DUF1192 PF06698.6 gi|352682523|ref|YP_004893047.1| - 0.69 9.7 6.3 16 5.3 0.1 3.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1192) Tropomyosin_1 PF12718.2 gi|352682523|ref|YP_004893047.1| - 0.78 9.5 5.3 1.1 9.1 0.3 2.1 2 1 0 2 2 1 0 Tropomyosin like XhlA PF10779.4 gi|352682523|ref|YP_004893047.1| - 1.3 8.9 9.0 0.89 9.5 2.5 2.5 2 1 1 3 3 2 0 Haemolysin XhlA SNARE PF05739.14 gi|352682523|ref|YP_004893047.1| - 6.3 6.5 7.1 5.3 6.7 0.9 3.2 2 1 0 3 3 2 0 SNARE domain dTDP_sugar_isom PF00908.12 gi|352682524|ref|YP_004893048.1| - 4.3e-67 224.8 0.0 4.8e-67 224.6 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase RmlD_sub_bind PF04321.12 gi|352682525|ref|YP_004893049.1| - 8.2e-61 205.4 0.0 9.1e-61 205.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|352682525|ref|YP_004893049.1| - 7.8e-18 64.7 0.1 1.3e-17 64.0 0.0 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|352682525|ref|YP_004893049.1| - 1.2e-10 41.6 0.2 3.6e-10 40.1 0.1 1.7 1 1 1 2 2 2 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|352682525|ref|YP_004893049.1| - 9.5e-08 31.2 0.2 2.5e-06 26.6 0.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|352682525|ref|YP_004893049.1| - 2.8e-07 29.7 0.4 1.3e-05 24.2 0.0 2.4 2 1 1 3 3 3 1 Male sterility protein 3Beta_HSD PF01073.14 gi|352682525|ref|YP_004893049.1| - 7e-05 21.6 0.0 0.00019 20.2 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DFP PF04127.10 gi|352682525|ref|YP_004893049.1| - 0.016 14.8 0.1 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein KR PF08659.5 gi|352682525|ref|YP_004893049.1| - 0.022 14.4 1.1 0.1 12.2 0.3 2.2 2 1 0 2 2 2 0 KR domain adh_short PF00106.20 gi|352682525|ref|YP_004893049.1| - 0.068 13.0 5.2 0.17 11.8 2.6 2.3 2 1 0 2 2 2 0 short chain dehydrogenase Epimerase PF01370.16 gi|352682526|ref|YP_004893050.1| - 3e-64 216.7 0.0 3.5e-64 216.4 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|352682526|ref|YP_004893050.1| - 2.4e-24 85.7 0.0 2.9e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|352682526|ref|YP_004893050.1| - 3.2e-14 52.3 0.0 3.9e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|352682526|ref|YP_004893050.1| - 4.5e-12 45.4 0.0 4.1e-11 42.2 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|352682526|ref|YP_004893050.1| - 2.1e-10 40.0 0.0 1.9e-09 36.8 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|352682526|ref|YP_004893050.1| - 5.3e-05 23.2 0.0 7.2e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|352682526|ref|YP_004893050.1| - 7.3e-05 22.7 0.2 0.00057 19.8 0.1 2.1 1 1 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.15 gi|352682526|ref|YP_004893050.1| - 0.057 13.3 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.8 gi|352682526|ref|YP_004893050.1| - 0.071 12.3 0.0 0.3 10.3 0.0 1.8 2 0 0 2 2 2 0 NmrA-like family KR PF08659.5 gi|352682526|ref|YP_004893050.1| - 0.12 11.9 0.1 0.33 10.5 0.1 1.8 1 1 0 1 1 1 0 KR domain NTP_transferase PF00483.18 gi|352682527|ref|YP_004893051.1| - 1.5e-31 109.6 0.0 1.8e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|352682527|ref|YP_004893051.1| - 0.0016 17.8 0.6 0.03 13.8 0.0 3.0 4 0 0 4 4 4 1 Bacterial transferase hexapeptide (six repeats) Bactofilin PF04519.8 gi|352682527|ref|YP_004893051.1| - 0.023 14.7 1.2 0.04 13.9 0.8 1.3 1 0 0 1 1 1 0 Polymer-forming cytoskeletal Glycos_transf_2 PF00535.21 gi|352682527|ref|YP_004893051.1| - 0.052 13.2 0.0 0.089 12.4 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|352682527|ref|YP_004893051.1| - 0.081 12.9 0.5 0.58 10.2 0.0 2.3 2 1 0 2 2 2 0 MobA-like NTP transferase domain Epimerase PF01370.16 gi|352682528|ref|YP_004893052.1| - 2.1e-53 181.1 0.0 2.7e-53 180.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|352682528|ref|YP_004893052.1| - 6.5e-24 84.3 0.0 8.1e-24 83.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|352682528|ref|YP_004893052.1| - 7.2e-17 61.2 0.0 4.5e-12 45.4 0.0 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|352682528|ref|YP_004893052.1| - 9.3e-15 54.0 0.0 1.3e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|352682528|ref|YP_004893052.1| - 1.4e-12 47.1 0.4 1.1e-07 31.0 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|352682528|ref|YP_004893052.1| - 2e-11 44.2 0.0 3.1e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|352682528|ref|YP_004893052.1| - 9.1e-06 25.6 5.2 2.3e-05 24.3 0.0 3.0 1 1 1 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|352682528|ref|YP_004893052.1| - 0.003 17.2 0.2 0.0086 15.7 0.0 1.8 2 0 0 2 2 2 1 KR domain NmrA PF05368.8 gi|352682528|ref|YP_004893052.1| - 0.035 13.3 0.0 0.08 12.1 0.0 1.6 2 0 0 2 2 2 0 NmrA-like family Glycos_transf_2 PF00535.21 gi|352682529|ref|YP_004893053.1| - 1.8e-20 73.2 0.0 2.7e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352682529|ref|YP_004893053.1| - 7.4e-11 42.2 0.0 1.1e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NDUF_B12 PF08122.7 gi|352682529|ref|YP_004893053.1| - 0.15 11.8 0.5 0.75 9.5 0.0 2.2 1 1 1 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family AAA_33 PF13671.1 gi|352682531|ref|YP_004893055.1| - 0.0014 18.5 0.1 0.019 14.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|352682531|ref|YP_004893055.1| - 0.0015 18.6 0.0 0.0029 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|352682531|ref|YP_004893055.1| - 0.0021 17.4 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352682531|ref|YP_004893055.1| - 0.0033 17.4 0.1 0.0067 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.22 gi|352682531|ref|YP_004893055.1| - 0.0044 17.3 0.0 0.0086 16.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter IstB_IS21 PF01695.12 gi|352682531|ref|YP_004893055.1| - 0.0065 15.9 0.0 0.0098 15.3 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|352682531|ref|YP_004893055.1| - 0.0065 17.2 0.0 0.019 15.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|352682531|ref|YP_004893055.1| - 0.0072 15.8 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|352682531|ref|YP_004893055.1| - 0.016 15.5 0.0 0.063 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|352682531|ref|YP_004893055.1| - 0.018 15.2 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|352682531|ref|YP_004893055.1| - 0.028 14.0 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|352682531|ref|YP_004893055.1| - 0.028 14.0 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|352682531|ref|YP_004893055.1| - 0.052 12.7 0.0 0.08 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|352682531|ref|YP_004893055.1| - 0.09 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|352682531|ref|YP_004893055.1| - 0.1 12.5 0.0 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|352682531|ref|YP_004893055.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|352682531|ref|YP_004893055.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|352682531|ref|YP_004893055.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|352682531|ref|YP_004893055.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|352682531|ref|YP_004893055.1| - 0.15 10.9 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain AAA_PrkA PF08298.6 gi|352682531|ref|YP_004893055.1| - 0.17 10.5 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain Adeno_IVa2 PF02456.10 gi|352682531|ref|YP_004893055.1| - 0.23 10.0 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein Polysacc_synt PF01943.12 gi|352682532|ref|YP_004893056.1| - 2.5e-23 82.7 44.1 2.5e-23 82.7 18.9 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|352682532|ref|YP_004893056.1| - 2e-12 47.1 40.5 2e-12 47.1 28.1 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|352682532|ref|YP_004893056.1| - 1.9e-10 40.6 33.8 2.1e-08 34.1 11.1 4.2 3 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|352682532|ref|YP_004893056.1| - 3.4e-06 26.7 41.9 9.2e-06 25.3 9.0 3.3 3 1 0 3 3 3 2 MatE Methyltransf_24 PF13578.1 gi|352682534|ref|YP_004893058.1| - 1.2e-17 64.6 0.0 2e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CmcI PF04989.7 gi|352682534|ref|YP_004893058.1| - 1.7e-11 43.8 0.0 3.8e-07 29.6 0.0 2.1 2 0 0 2 2 2 2 Cephalosporin hydroxylase Methyltransf_3 PF01596.12 gi|352682534|ref|YP_004893058.1| - 3.1e-06 26.3 0.0 4.9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase FtsJ PF01728.14 gi|352682534|ref|YP_004893058.1| - 0.03 14.3 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Glyco_trans_2_3 PF13632.1 gi|352682535|ref|YP_004893059.1| - 0.035 13.8 0.0 0.043 13.5 0.0 1.2 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|352682536|ref|YP_004893060.1| - 7.3e-21 74.5 0.0 1.1e-20 74.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352682536|ref|YP_004893060.1| - 7.7e-18 65.1 0.0 1e-17 64.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|352682536|ref|YP_004893060.1| - 1.5e-10 41.1 0.6 2.4e-10 40.4 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|352682536|ref|YP_004893060.1| - 6.2e-10 38.6 0.0 0.00017 20.8 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family Glyco_tranf_2_2 PF10111.4 gi|352682536|ref|YP_004893060.1| - 8.3e-10 38.1 0.0 1.2e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|352682536|ref|YP_004893060.1| - 5.1e-06 25.8 0.0 8.1e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 GlcNAc PF11397.3 gi|352682536|ref|YP_004893060.1| - 2.3e-05 23.6 0.2 3.2e-05 23.1 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase (GlcNAc) Thymidylate_kin PF02223.12 gi|352682537|ref|YP_004893061.1| - 1.4e-05 24.5 0.0 0.0065 15.8 0.0 2.4 2 1 0 2 2 2 2 Thymidylate kinase dNK PF01712.14 gi|352682537|ref|YP_004893061.1| - 0.0018 18.1 0.1 0.0026 17.6 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.1 gi|352682537|ref|YP_004893061.1| - 0.012 15.9 0.2 0.17 12.1 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|352682537|ref|YP_004893061.1| - 0.025 15.3 0.0 0.057 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF1301 PF06979.7 gi|352682537|ref|YP_004893061.1| - 0.032 14.3 2.9 0.074 13.2 1.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1301) AAA_33 PF13671.1 gi|352682537|ref|YP_004893061.1| - 0.066 13.0 0.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|352682537|ref|YP_004893061.1| - 0.069 13.2 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|352682537|ref|YP_004893061.1| - 0.11 12.1 0.0 0.37 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|352682537|ref|YP_004893061.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Glyco_trans_1_4 PF13692.1 gi|352682538|ref|YP_004893062.1| - 2.6e-09 37.3 0.0 4.6e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|352682538|ref|YP_004893062.1| - 0.015 14.7 0.0 0.033 13.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|352682539|ref|YP_004893063.1| - 5.4e-16 58.4 0.0 1.3e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|352682539|ref|YP_004893063.1| - 8.3e-09 35.3 1.0 5.1e-07 29.5 0.2 2.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|352682539|ref|YP_004893063.1| - 7.9e-07 29.2 0.0 3.5e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|352682539|ref|YP_004893063.1| - 1.8e-06 28.1 0.1 3.2e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|352682539|ref|YP_004893063.1| - 0.029 14.6 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|352682540|ref|YP_004893064.1| - 2.4e-19 69.6 0.0 4.1e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352682540|ref|YP_004893064.1| - 8.7e-19 68.2 0.0 1.8e-18 67.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|352682540|ref|YP_004893064.1| - 9e-09 35.3 0.0 4.8e-08 32.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|352682540|ref|YP_004893064.1| - 9.3e-09 34.7 0.0 5.5e-08 32.2 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase family 21 GlcNAc PF11397.3 gi|352682540|ref|YP_004893064.1| - 3.6e-05 23.0 0.0 5.2e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase (GlcNAc) Glyco_tranf_2_4 PF13704.1 gi|352682540|ref|YP_004893064.1| - 0.012 15.8 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|352682541|ref|YP_004893065.1| - 2.5e-24 85.8 0.1 3.9e-24 85.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352682541|ref|YP_004893065.1| - 1.2e-13 51.4 0.0 2.1e-11 44.0 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|352682541|ref|YP_004893065.1| - 6e-11 41.9 0.0 7e-09 35.1 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|352682541|ref|YP_004893065.1| - 3.5e-10 39.9 3.0 7e-09 35.6 2.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|352682541|ref|YP_004893065.1| - 2.4e-06 26.9 0.0 0.0039 16.5 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 21 Anp1 PF03452.9 gi|352682541|ref|YP_004893065.1| - 0.00013 21.2 0.0 0.011 14.9 0.0 2.1 1 1 1 2 2 2 1 Anp1 Glyco_tranf_2_4 PF13704.1 gi|352682541|ref|YP_004893065.1| - 0.001 19.3 0.0 0.0021 18.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|352682541|ref|YP_004893065.1| - 0.02 14.1 0.0 0.34 10.1 0.0 2.4 2 1 0 3 3 3 0 Glycosyltransferase like family Glycos_transf_2 PF00535.21 gi|352682542|ref|YP_004893066.1| - 6.8e-13 48.6 0.0 1.3e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352682542|ref|YP_004893066.1| - 0.0013 18.5 0.1 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|352682542|ref|YP_004893066.1| - 0.021 13.9 0.1 0.17 10.9 0.0 2.0 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Polysacc_synt_C PF14667.1 gi|352682543|ref|YP_004893067.1| - 2.5e-10 40.3 20.4 2.5e-10 40.3 14.2 1.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|352682543|ref|YP_004893067.1| - 0.00071 18.1 15.4 0.0018 16.8 10.3 1.7 1 1 1 2 2 2 2 MviN-like protein Polysacc_synt PF01943.12 gi|352682544|ref|YP_004893068.1| - 2.6e-14 53.1 17.0 3e-14 52.9 11.8 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|352682544|ref|YP_004893068.1| - 5e-06 26.2 16.8 1.9e-05 24.3 4.5 2.4 1 1 2 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|352682544|ref|YP_004893068.1| - 0.00016 21.4 9.7 0.00016 21.4 6.7 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|352682544|ref|YP_004893068.1| - 0.00026 20.5 31.1 0.00036 20.0 21.6 1.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Glycos_transf_2 PF00535.21 gi|352682545|ref|YP_004893069.1| - 6.7e-22 77.9 0.0 1.4e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|352682545|ref|YP_004893069.1| - 4.8e-20 72.3 0.0 6e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|352682545|ref|YP_004893069.1| - 1.6e-12 47.5 0.1 2.2e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|352682545|ref|YP_004893069.1| - 5.5e-06 25.6 0.0 1.8e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|352682545|ref|YP_004893069.1| - 0.0028 16.9 0.0 0.0053 16.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|352682545|ref|YP_004893069.1| - 0.01 15.2 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glyco_tranf_2_3 PF13641.1 gi|352682546|ref|YP_004893070.1| - 5e-14 52.6 0.0 1e-13 51.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|352682546|ref|YP_004893070.1| - 2.1e-13 50.2 0.0 3.3e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|352682546|ref|YP_004893070.1| - 2e-08 33.6 0.0 2.9e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|352682546|ref|YP_004893070.1| - 6e-07 28.9 0.0 1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|352682546|ref|YP_004893070.1| - 0.0027 16.9 0.0 0.021 14.0 0.0 2.2 3 0 0 3 3 3 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|352682546|ref|YP_004893070.1| - 0.014 15.0 0.1 0.043 13.5 0.1 1.9 1 1 0 1 1 1 0 Glycosyl transferase family group 2 TPR_17 PF13431.1 gi|352682547|ref|YP_004893071.1| - 0.094 12.9 1.4 1.7 9.0 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Glyco_trans_1_4 PF13692.1 gi|352682548|ref|YP_004893072.1| - 2.3e-08 34.2 0.1 6.3e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|352682548|ref|YP_004893072.1| - 2.7e-08 33.4 0.0 8.8e-08 31.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.16 gi|352682549|ref|YP_004893073.1| - 1e-28 99.4 0.0 1.5e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3940 PF13076.1 gi|352682549|ref|YP_004893073.1| - 0.11 12.0 0.2 0.28 10.7 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3940) Glycos_transf_1 PF00534.15 gi|352682550|ref|YP_004893074.1| - 1.5e-33 115.6 0.0 2.2e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352682550|ref|YP_004893074.1| - 2.3e-19 69.8 0.0 7.6e-19 68.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|352682550|ref|YP_004893074.1| - 1.2e-16 60.9 0.0 1.4e-15 57.4 0.0 2.1 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|352682550|ref|YP_004893074.1| - 2.7e-09 37.3 0.0 2.6e-08 34.1 0.0 2.4 1 1 2 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|352682550|ref|YP_004893074.1| - 5.8e-07 29.4 0.0 2.7e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|352682550|ref|YP_004893074.1| - 3.5e-06 27.2 0.0 6.9e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 NAD_binding_10 PF13460.1 gi|352682550|ref|YP_004893074.1| - 0.0034 17.4 0.1 0.19 11.6 0.0 3.1 2 1 0 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|352682550|ref|YP_004893074.1| - 0.021 15.2 0.1 0.065 13.6 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_5 PF08323.6 gi|352682550|ref|YP_004893074.1| - 0.029 13.8 0.1 0.094 12.1 0.0 1.8 1 1 1 2 2 2 0 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|352682551|ref|YP_004893075.1| - 4.5e-05 23.6 0.0 9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|352682551|ref|YP_004893075.1| - 0.11 12.2 0.1 0.27 10.9 0.1 1.6 1 1 0 1 1 1 0 Glycosyltransferase Family 4 MSP7_C PF12948.2 gi|352682551|ref|YP_004893075.1| - 0.11 12.7 4.5 0.55 10.4 2.4 2.2 2 0 0 2 2 2 0 MSP7-like protein C-terminal domain Glycos_transf_1 PF00534.15 gi|352682553|ref|YP_004893077.1| - 1.5e-33 115.5 0.3 3.7e-33 114.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352682553|ref|YP_004893077.1| - 9.8e-19 67.8 0.2 2.3e-18 66.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|352682553|ref|YP_004893077.1| - 2.7e-12 47.1 0.0 5.5e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|352682553|ref|YP_004893077.1| - 4.5e-08 33.0 0.2 8.3e-08 32.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|352682553|ref|YP_004893077.1| - 1.7e-06 28.2 0.0 3.3e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|352682553|ref|YP_004893077.1| - 7.6e-05 22.3 0.1 0.00013 21.5 0.1 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|352682553|ref|YP_004893077.1| - 0.00015 21.5 0.5 0.00031 20.5 0.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|352682554|ref|YP_004893078.1| - 2.9e-30 104.9 0.1 4.7e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|352682554|ref|YP_004893078.1| - 6.1e-17 62.2 0.1 5.9e-16 59.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|352682554|ref|YP_004893078.1| - 7.2e-16 58.5 0.1 8.6e-15 55.0 0.0 2.4 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|352682554|ref|YP_004893078.1| - 1.1e-14 54.6 0.2 1.7e-14 53.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|352682554|ref|YP_004893078.1| - 8.5e-07 29.1 0.0 3e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|352682554|ref|YP_004893078.1| - 0.0032 17.3 0.2 0.0093 15.8 0.1 1.9 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|352682554|ref|YP_004893078.1| - 0.044 13.2 1.2 1.5 8.2 0.8 2.4 1 1 0 1 1 1 0 Starch synthase catalytic domain PIG-L PF02585.12 gi|352682554|ref|YP_004893078.1| - 0.089 13.3 0.0 0.35 11.3 0.0 1.9 1 1 1 2 2 2 0 GlcNAc-PI de-N-acetylase DUF1616 PF07760.6 gi|352682555|ref|YP_004893079.1| - 3.8e-29 101.7 10.4 4.7e-29 101.4 7.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4395 PF14340.1 gi|352682555|ref|YP_004893079.1| - 0.33 11.0 6.1 1.5 8.8 4.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) PRA1 PF03208.14 gi|352682555|ref|YP_004893079.1| - 0.69 9.2 4.4 0.9 8.8 3.0 1.2 1 0 0 1 1 1 0 PRA1 family protein DUF1616 PF07760.6 gi|352682556|ref|YP_004893080.1| - 1.8e-18 66.7 0.2 2.8e-18 66.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) NTP_transf_2 PF01909.18 gi|352682559|ref|YP_004893083.1| - 8.1e-14 51.7 0.0 9.5e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|352682559|ref|YP_004893083.1| - 0.00014 21.8 0.0 0.00018 21.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF2235 PF09994.4 gi|352682559|ref|YP_004893083.1| - 0.0076 15.6 0.0 0.0086 15.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized alpha/beta hydrolase domain (DUF2235) DUF294 PF03445.8 gi|352682559|ref|YP_004893083.1| - 0.027 14.1 0.0 0.04 13.5 0.0 1.3 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 NTF-like PF14540.1 gi|352682559|ref|YP_004893083.1| - 0.093 12.3 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyltransferase-like Mur_ligase_C PF02875.16 gi|352682559|ref|YP_004893083.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain HEPN PF05168.9 gi|352682560|ref|YP_004893084.1| - 6.7e-25 87.2 3.4 7.6e-25 87.0 2.4 1.0 1 0 0 1 1 1 1 HEPN domain TPR_12 PF13424.1 gi|352682560|ref|YP_004893084.1| - 0.24 11.3 2.9 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_13 PF13166.1 gi|352682561|ref|YP_004893085.1| - 1.1e-08 34.0 6.8 1.3e-08 33.7 4.7 1.0 1 0 0 1 1 1 1 AAA domain HSBP1 PF06825.7 gi|352682561|ref|YP_004893085.1| - 1.8e-08 33.8 32.5 0.0032 17.0 1.3 6.3 1 1 4 6 6 6 3 Heat shock factor binding protein 1 MtrG PF04210.8 gi|352682561|ref|YP_004893085.1| - 6.4e-08 32.1 17.8 0.028 14.0 0.3 6.3 2 1 6 8 8 7 2 Tetrahydromethanopterin S-methyltransferase, subunit G AKNA PF12443.3 gi|352682561|ref|YP_004893085.1| - 3.7e-07 30.1 6.2 0.66 10.0 0.1 5.2 1 1 4 5 5 4 2 AT-hook-containing transcription factor Snapin_Pallidin PF14712.1 gi|352682561|ref|YP_004893085.1| - 4.5e-07 30.0 9.1 0.012 15.9 0.0 4.0 1 1 2 4 4 4 1 Snapin/Pallidin NPV_P10 PF05531.7 gi|352682561|ref|YP_004893085.1| - 7.7e-07 29.2 17.3 5.3e-05 23.3 2.7 3.5 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein FliD_C PF07195.7 gi|352682561|ref|YP_004893085.1| - 1.4e-06 27.7 9.7 0.029 13.6 1.2 3.3 1 1 2 3 3 3 2 Flagellar hook-associated protein 2 C-terminus Baculo_PEP_C PF04513.7 gi|352682561|ref|YP_004893085.1| - 2.6e-06 27.3 12.7 0.0023 17.7 3.8 2.7 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus HalX PF08663.5 gi|352682561|ref|YP_004893085.1| - 2.8e-06 27.2 17.5 0.45 10.5 0.3 5.8 1 1 3 5 5 5 1 HalX domain ApoLp-III PF07464.6 gi|352682561|ref|YP_004893085.1| - 7.2e-06 26.1 13.5 0.00022 21.2 3.6 2.6 2 1 1 3 3 2 2 Apolipophorin-III precursor (apoLp-III) RmuC PF02646.11 gi|352682561|ref|YP_004893085.1| - 7.4e-06 25.0 6.9 0.047 12.5 0.1 3.1 1 1 2 3 3 3 2 RmuC family Flagellin_C PF00700.16 gi|352682561|ref|YP_004893085.1| - 1.1e-05 25.4 12.1 0.052 13.6 0.5 4.5 1 1 3 4 4 4 2 Bacterial flagellin C-terminal helical region Apolipoprotein PF01442.13 gi|352682561|ref|YP_004893085.1| - 1.2e-05 24.9 7.8 1.6e-05 24.4 4.4 2.0 2 1 0 2 2 1 1 Apolipoprotein A1/A4/E domain DUF1664 PF07889.7 gi|352682561|ref|YP_004893085.1| - 1.4e-05 24.8 16.8 0.0055 16.5 3.7 3.5 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Transcrip_act PF04949.8 gi|352682561|ref|YP_004893085.1| - 2.9e-05 23.7 13.6 0.0018 17.9 1.1 3.2 1 1 2 3 3 3 2 Transcriptional activator DUF948 PF06103.6 gi|352682561|ref|YP_004893085.1| - 3.5e-05 23.5 14.8 0.0046 16.7 1.3 3.2 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) COG2 PF06148.6 gi|352682561|ref|YP_004893085.1| - 3.6e-05 23.6 9.1 0.25 11.1 1.1 3.3 1 1 2 3 3 3 3 COG (conserved oligomeric Golgi) complex component, COG2 Syntaxin PF00804.20 gi|352682561|ref|YP_004893085.1| - 4.1e-05 23.6 14.8 0.0062 16.6 1.4 2.7 1 1 1 2 2 2 2 Syntaxin Matrilin_ccoil PF10393.4 gi|352682561|ref|YP_004893085.1| - 5.1e-05 22.5 12.9 5.3 6.4 0.1 6.6 3 2 4 7 7 7 0 Trimeric coiled-coil oligomerisation domain of matrilin Transposase_22 PF02994.9 gi|352682561|ref|YP_004893085.1| - 5.2e-05 21.9 17.4 0.016 13.7 3.5 2.2 1 1 1 2 2 2 2 L1 transposable element Laminin_II PF06009.7 gi|352682561|ref|YP_004893085.1| - 0.0001 22.0 12.7 0.24 11.1 1.2 3.2 1 1 2 3 3 3 2 Laminin Domain II DUF3829 PF12889.2 gi|352682561|ref|YP_004893085.1| - 0.0001 21.5 4.6 0.017 14.3 0.8 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF3829) IncA PF04156.9 gi|352682561|ref|YP_004893085.1| - 0.00011 21.8 5.3 0.00092 18.8 1.4 2.1 1 1 1 2 2 2 1 IncA protein Myosin_tail_1 PF01576.14 gi|352682561|ref|YP_004893085.1| - 0.00015 19.6 12.5 0.00022 19.1 8.7 1.2 1 0 0 1 1 1 1 Myosin tail TMF_DNA_bd PF12329.3 gi|352682561|ref|YP_004893085.1| - 0.00022 20.9 15.4 0.029 14.1 1.7 4.6 2 1 3 5 5 4 2 TATA element modulatory factor 1 DNA binding MCPsignal PF00015.16 gi|352682561|ref|YP_004893085.1| - 0.00025 20.6 12.3 0.00081 18.9 6.7 2.1 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Sugarporin_N PF11471.3 gi|352682561|ref|YP_004893085.1| - 0.00026 20.5 0.9 1.8 8.2 0.1 3.8 3 1 0 3 3 3 0 Maltoporin periplasmic N-terminal extension Tropomyosin_1 PF12718.2 gi|352682561|ref|YP_004893085.1| - 0.00037 20.3 10.3 0.32 10.8 0.3 3.0 1 1 1 2 2 2 2 Tropomyosin like CagA PF03507.8 gi|352682561|ref|YP_004893085.1| - 0.00042 20.2 4.6 0.00063 19.6 3.2 1.3 1 0 0 1 1 1 1 CagA exotoxin Seryl_tRNA_N PF02403.17 gi|352682561|ref|YP_004893085.1| - 0.0005 20.0 17.1 0.048 13.6 2.6 3.0 1 1 2 3 3 3 2 Seryl-tRNA synthetase N-terminal domain SF-assemblin PF06705.6 gi|352682561|ref|YP_004893085.1| - 0.00068 18.8 15.5 0.0012 18.0 10.8 1.4 1 0 0 1 1 1 1 SF-assemblin/beta giardin DUF2884 PF11101.3 gi|352682561|ref|YP_004893085.1| - 0.00092 18.6 7.1 0.016 14.5 2.5 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2884) GAS PF13851.1 gi|352682561|ref|YP_004893085.1| - 0.0011 18.2 9.8 0.0058 15.8 2.2 2.1 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding DUF2421 PF10334.4 gi|352682561|ref|YP_004893085.1| - 0.0011 18.5 1.4 1.1 8.8 0.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2421) Prefoldin_2 PF01920.15 gi|352682561|ref|YP_004893085.1| - 0.0012 18.5 11.1 0.39 10.4 0.3 4.3 1 1 3 4 4 4 1 Prefoldin subunit DUF2130 PF09903.4 gi|352682561|ref|YP_004893085.1| - 0.0012 17.6 12.4 0.052 12.2 2.3 2.2 1 1 1 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2130) MscS_porin PF12795.2 gi|352682561|ref|YP_004893085.1| - 0.0015 17.8 7.5 0.19 11.0 2.9 2.9 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain Mnd1 PF03962.10 gi|352682561|ref|YP_004893085.1| - 0.0017 18.0 11.3 0.066 12.8 3.0 2.4 1 1 1 2 2 2 2 Mnd1 family DUF3584 PF12128.3 gi|352682561|ref|YP_004893085.1| - 0.0019 15.6 8.4 0.0028 15.1 5.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF2580 PF10824.3 gi|352682561|ref|YP_004893085.1| - 0.0021 18.3 0.4 0.21 11.9 0.1 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF2580) AAA_27 PF13514.1 gi|352682561|ref|YP_004893085.1| - 0.0021 15.8 9.3 0.0031 15.2 6.5 1.3 1 0 0 1 1 1 1 AAA domain Hemagglutinin PF00509.13 gi|352682561|ref|YP_004893085.1| - 0.0029 15.8 14.9 0.23 9.5 0.2 2.9 1 1 2 3 3 3 2 Haemagglutinin Spectrin PF00435.16 gi|352682561|ref|YP_004893085.1| - 0.0029 17.8 6.4 0.96 9.7 4.7 2.7 1 1 0 1 1 1 0 Spectrin repeat Lebercilin PF15619.1 gi|352682561|ref|YP_004893085.1| - 0.003 17.0 11.1 0.47 9.8 1.2 3.0 1 1 0 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease Nup54 PF13874.1 gi|352682561|ref|YP_004893085.1| - 0.003 17.2 11.1 0.068 12.8 1.3 3.0 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 Atg14 PF10186.4 gi|352682561|ref|YP_004893085.1| - 0.0031 16.5 13.5 0.083 11.8 4.4 2.4 1 1 1 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 Phage_GPO PF05929.6 gi|352682561|ref|YP_004893085.1| - 0.0041 16.4 10.5 0.078 12.2 1.8 2.1 1 1 1 2 2 2 2 Phage capsid scaffolding protein (GPO) serine peptidase Vip3A_N PF12495.3 gi|352682561|ref|YP_004893085.1| - 0.0047 16.6 6.9 0.094 12.3 0.7 2.2 1 1 1 2 2 2 1 Vegetative insecticide protein 3A N terminal Cortex-I_coil PF09304.5 gi|352682561|ref|YP_004893085.1| - 0.0048 16.9 16.4 2.2 8.3 0.4 4.5 1 1 3 4 4 4 0 Cortexillin I, coiled coil Prefoldin_3 PF13758.1 gi|352682561|ref|YP_004893085.1| - 0.005 16.5 18.3 0.041 13.6 1.4 4.3 1 1 1 3 3 3 1 Prefoldin subunit KH_5 PF13184.1 gi|352682561|ref|YP_004893085.1| - 0.0051 16.5 10.6 1.4 8.8 0.2 4.0 1 1 4 5 5 4 0 NusA-like KH domain DUF4618 PF15397.1 gi|352682561|ref|YP_004893085.1| - 0.0053 16.1 9.1 0.064 12.5 6.3 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) MRF_C1 PF13887.1 gi|352682561|ref|YP_004893085.1| - 0.0061 15.5 16.1 5.3 6.1 0.1 8.4 4 2 4 8 8 7 0 Myelin gene regulatory factor -C-terminal domain 1 KMP11 PF03037.11 gi|352682561|ref|YP_004893085.1| - 0.0062 17.1 4.0 0.69 10.5 0.0 3.3 1 1 2 3 3 3 1 Kinetoplastid membrane protein 11 Erythro-docking PF09277.6 gi|352682561|ref|YP_004893085.1| - 0.0067 16.0 5.8 5.8 6.6 0.2 5.1 1 1 3 4 4 3 0 Erythronolide synthase, docking SlyX PF04102.7 gi|352682561|ref|YP_004893085.1| - 0.0067 16.7 11.3 0.32 11.3 0.8 4.1 1 1 2 3 3 3 1 SlyX BLOC1_2 PF10046.4 gi|352682561|ref|YP_004893085.1| - 0.0069 16.5 11.6 0.64 10.1 0.8 3.2 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 NYD-SP28 PF14772.1 gi|352682561|ref|YP_004893085.1| - 0.0075 16.3 10.5 0.15 12.2 1.4 3.0 1 1 2 3 3 3 2 Sperm tail Cast PF10174.4 gi|352682561|ref|YP_004893085.1| - 0.0076 14.3 13.5 0.018 13.1 9.3 1.5 1 1 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Perilipin PF03036.11 gi|352682561|ref|YP_004893085.1| - 0.0078 15.0 1.3 0.012 14.5 0.9 1.3 1 0 0 1 1 1 1 Perilipin family DUF2802 PF10975.3 gi|352682561|ref|YP_004893085.1| - 0.0093 15.7 4.9 10 5.9 0.1 4.4 2 2 0 2 2 2 0 Protein of unknown function (DUF2802) Mt_ATP-synt_D PF05873.7 gi|352682561|ref|YP_004893085.1| - 0.0099 15.5 4.7 0.98 9.0 3.3 2.5 1 1 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) TraB PF01963.12 gi|352682561|ref|YP_004893085.1| - 0.011 15.2 3.1 0.11 11.8 0.2 2.4 1 1 0 2 2 2 0 TraB family Prominin PF05478.6 gi|352682561|ref|YP_004893085.1| - 0.011 13.3 5.9 0.0083 13.7 2.6 1.6 1 1 1 2 2 2 0 Prominin Fib_alpha PF08702.5 gi|352682561|ref|YP_004893085.1| - 0.012 15.7 13.1 0.45 10.6 2.3 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4455 PF14643.1 gi|352682561|ref|YP_004893085.1| - 0.013 14.1 10.0 0.013 14.2 2.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) FlxA PF14282.1 gi|352682561|ref|YP_004893085.1| - 0.014 15.3 7.5 0.06 13.2 0.7 2.9 1 1 2 3 3 3 0 FlxA-like protein DUF3450 PF11932.3 gi|352682561|ref|YP_004893085.1| - 0.014 14.6 10.2 0.051 12.8 2.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.7 gi|352682561|ref|YP_004893085.1| - 0.016 14.9 7.7 0.69 9.6 3.3 3.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Prefoldin PF02996.12 gi|352682561|ref|YP_004893085.1| - 0.016 14.8 15.0 1.1 8.9 1.4 4.2 1 1 3 4 4 4 0 Prefoldin subunit DUF4200 PF13863.1 gi|352682561|ref|YP_004893085.1| - 0.017 15.0 12.4 1 9.3 0.9 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) FH2 PF02181.18 gi|352682561|ref|YP_004893085.1| - 0.019 13.8 3.7 0.15 10.9 0.1 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF972 PF06156.8 gi|352682561|ref|YP_004893085.1| - 0.02 15.2 8.5 0.57 10.5 0.3 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Spc7 PF08317.6 gi|352682561|ref|YP_004893085.1| - 0.021 13.4 13.3 0.37 9.3 5.6 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein TACC PF05010.9 gi|352682561|ref|YP_004893085.1| - 0.024 14.3 8.6 0.6 9.8 6.1 2.7 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) HAUS6_N PF14661.1 gi|352682561|ref|YP_004893085.1| - 0.025 13.9 6.1 0.75 9.1 0.8 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF1640 PF07798.6 gi|352682561|ref|YP_004893085.1| - 0.026 14.5 16.1 0.54 10.2 2.1 4.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1640) HAUS-augmin3 PF14932.1 gi|352682561|ref|YP_004893085.1| - 0.027 13.6 7.0 0.3 10.2 1.9 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DUF4407 PF14362.1 gi|352682561|ref|YP_004893085.1| - 0.027 13.4 10.0 0.089 11.7 7.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) V_ATPase_I PF01496.14 gi|352682561|ref|YP_004893085.1| - 0.027 12.3 8.8 0.14 10.0 2.9 2.2 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family Reo_sigmaC PF04582.7 gi|352682561|ref|YP_004893085.1| - 0.032 13.4 7.0 0.48 9.5 1.4 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein DUF1110 PF06533.7 gi|352682561|ref|YP_004893085.1| - 0.035 13.9 9.1 0.26 11.0 0.5 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1110) DUF4613 PF15390.1 gi|352682561|ref|YP_004893085.1| - 0.037 12.2 2.2 0.044 11.9 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) DivIVA PF05103.8 gi|352682561|ref|YP_004893085.1| - 0.037 14.0 9.5 2.1 8.3 0.0 3.1 1 1 2 3 3 3 0 DivIVA protein DUF2730 PF10805.3 gi|352682561|ref|YP_004893085.1| - 0.038 13.7 10.8 2.9 7.6 1.7 4.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) HSCB_C PF07743.8 gi|352682561|ref|YP_004893085.1| - 0.039 14.4 12.8 6.7e+03 -2.4 8.8 4.3 1 1 0 1 1 0 0 HSCB C-terminal oligomerisation domain DUF1319 PF07028.6 gi|352682561|ref|YP_004893085.1| - 0.04 14.0 8.8 0.52 10.5 2.3 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) DUF148 PF02520.12 gi|352682561|ref|YP_004893085.1| - 0.045 13.5 9.9 0.17 11.6 1.5 2.8 1 1 3 4 4 4 0 Domain of unknown function DUF148 Val_tRNA-synt_C PF10458.4 gi|352682561|ref|YP_004893085.1| - 0.047 13.7 4.7 1.5 8.9 0.1 4.3 2 1 1 3 3 3 0 Valyl tRNA synthetase tRNA binding arm Ax_dynein_light PF10211.4 gi|352682561|ref|YP_004893085.1| - 0.048 13.4 11.7 1.3 8.8 0.6 3.1 1 1 2 3 3 3 0 Axonemal dynein light chain Syntaxin-6_N PF09177.6 gi|352682561|ref|YP_004893085.1| - 0.049 14.0 12.7 4.7e+02 1.2 8.8 3.1 1 1 0 1 1 1 0 Syntaxin 6, N-terminal TBPIP PF07106.8 gi|352682561|ref|YP_004893085.1| - 0.051 13.1 12.3 0.44 10.0 3.8 2.6 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TMP_2 PF06791.8 gi|352682561|ref|YP_004893085.1| - 0.051 13.1 5.5 1.8 8.1 3.2 2.5 1 1 0 1 1 1 0 Prophage tail length tape measure protein Uds1 PF15456.1 gi|352682561|ref|YP_004893085.1| - 0.057 13.4 10.4 28 4.7 7.2 2.9 1 1 0 1 1 1 0 Up-regulated During Septation SMC_Nse1 PF07574.8 gi|352682561|ref|YP_004893085.1| - 0.057 13.0 3.1 4.7 6.7 0.1 3.1 1 1 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex DUF2937 PF11157.3 gi|352682561|ref|YP_004893085.1| - 0.059 12.6 1.4 0.16 11.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) Rootletin PF15035.1 gi|352682561|ref|YP_004893085.1| - 0.06 13.3 9.1 1.2 9.1 6.3 2.1 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Occludin_ELL PF07303.8 gi|352682561|ref|YP_004893085.1| - 0.063 14.0 8.3 26 5.6 0.9 4.6 1 1 3 4 4 4 0 Occludin homology domain DUF2317 PF10079.4 gi|352682561|ref|YP_004893085.1| - 0.065 11.8 5.6 0.065 11.8 2.2 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF1845 PF08900.6 gi|352682561|ref|YP_004893085.1| - 0.071 12.3 6.0 5.7 6.1 0.2 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF1845) ACCA PF03255.9 gi|352682561|ref|YP_004893085.1| - 0.078 12.5 10.6 1.5 8.3 0.3 3.2 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Muted PF14942.1 gi|352682561|ref|YP_004893085.1| - 0.086 12.7 7.7 0.08 12.8 1.8 2.1 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Ribosomal_S30AE PF02482.14 gi|352682561|ref|YP_004893085.1| - 0.086 13.2 12.4 2.8 8.4 4.0 3.1 2 1 1 3 3 2 0 Sigma 54 modulation protein / S30EA ribosomal protein APG17 PF04108.7 gi|352682561|ref|YP_004893085.1| - 0.089 11.5 9.8 0.5 9.1 5.4 2.3 1 1 1 2 2 2 0 Autophagy protein Apg17 DivIC PF04977.10 gi|352682561|ref|YP_004893085.1| - 0.092 12.2 12.3 3 7.4 0.3 4.5 1 1 3 4 4 4 0 Septum formation initiator FUSC PF04632.7 gi|352682561|ref|YP_004893085.1| - 0.094 11.1 1.0 0.2 10.0 0.8 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein family TMCO5 PF14992.1 gi|352682561|ref|YP_004893085.1| - 0.1 11.7 12.0 0.24 10.4 2.9 2.2 1 1 1 2 2 2 0 TMCO5 family DUF4164 PF13747.1 gi|352682561|ref|YP_004893085.1| - 0.11 12.6 21.9 7 6.8 8.0 3.7 2 1 1 3 3 2 0 Domain of unknown function (DUF4164) DUF4446 PF14584.1 gi|352682561|ref|YP_004893085.1| - 0.12 12.2 8.3 0.43 10.3 0.5 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Vps51 PF08700.6 gi|352682561|ref|YP_004893085.1| - 0.12 12.2 7.2 0.8 9.5 1.2 3.1 1 1 2 3 3 3 0 Vps51/Vps67 IFT57 PF10498.4 gi|352682561|ref|YP_004893085.1| - 0.12 11.0 9.9 1 8.0 7.4 1.8 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 BCAS2 PF05700.6 gi|352682561|ref|YP_004893085.1| - 0.13 11.7 7.6 0.18 11.2 0.6 2.8 1 1 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) DUF1515 PF07439.6 gi|352682561|ref|YP_004893085.1| - 0.15 11.9 18.6 3.4 7.4 1.7 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) Peripla_BP_2 PF01497.13 gi|352682561|ref|YP_004893085.1| - 0.15 11.1 9.7 3.8 6.5 0.1 3.4 1 1 1 3 3 3 0 Periplasmic binding protein Bap31 PF05529.7 gi|352682561|ref|YP_004893085.1| - 0.16 11.4 1.7 2.9 7.3 1.2 2.1 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like LOH1CR12 PF10158.4 gi|352682561|ref|YP_004893085.1| - 0.18 11.6 6.1 1.4 8.7 1.6 2.3 1 1 1 2 2 2 0 Tumour suppressor protein TMPIT PF07851.8 gi|352682561|ref|YP_004893085.1| - 0.18 10.8 8.1 0.44 9.5 0.9 2.1 1 1 1 2 2 2 0 TMPIT-like protein Snf7 PF03357.16 gi|352682561|ref|YP_004893085.1| - 0.21 10.9 17.9 0.095 12.0 5.9 2.3 1 1 1 2 2 2 0 Snf7 DUF2703 PF10865.3 gi|352682561|ref|YP_004893085.1| - 0.23 11.3 3.3 15 5.5 0.1 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF2703) DNA_Packaging PF11053.3 gi|352682561|ref|YP_004893085.1| - 0.23 11.0 6.6 0.72 9.4 0.4 2.6 1 1 0 2 2 2 0 Terminase DNA packaging enzyme DASH_Duo1 PF08651.5 gi|352682561|ref|YP_004893085.1| - 0.25 10.9 7.2 15 5.2 0.3 3.8 2 1 1 4 4 4 0 DASH complex subunit Duo1 Nic96 PF04097.9 gi|352682561|ref|YP_004893085.1| - 0.27 9.2 7.0 3.8 5.5 4.8 2.0 1 1 0 1 1 1 0 Nup93/Nic96 MtrB PF05440.7 gi|352682561|ref|YP_004893085.1| - 0.27 11.2 5.5 10 6.2 0.2 3.9 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B V-SNARE_C PF12352.3 gi|352682561|ref|YP_004893085.1| - 0.3 11.1 9.5 31 4.7 0.0 5.0 3 1 1 5 5 4 0 Snare region anchored in the vesicle membrane C-terminus DUF16 PF01519.11 gi|352682561|ref|YP_004893085.1| - 0.33 11.1 11.4 88 3.4 7.4 2.9 1 1 1 2 2 1 0 Protein of unknown function DUF16 Fzo_mitofusin PF04799.8 gi|352682561|ref|YP_004893085.1| - 0.35 10.2 7.0 1.3 8.3 0.9 2.9 1 1 1 2 2 2 0 fzo-like conserved region DUF3456 PF11938.3 gi|352682561|ref|YP_004893085.1| - 0.36 10.8 5.7 0.61 10.0 0.3 2.5 1 1 1 2 2 2 0 TLR4 regulator and MIR-interacting MSAP Kinetocho_Slk19 PF12709.2 gi|352682561|ref|YP_004893085.1| - 0.38 10.8 6.3 4.1 7.5 0.5 3.8 1 1 1 2 2 2 0 Central kinetochore-associated Phage_GP20 PF06810.6 gi|352682561|ref|YP_004893085.1| - 0.4 10.1 12.7 0.45 9.9 1.5 2.5 1 1 1 2 2 2 0 Phage minor structural protein GP20 Fibritin_C PF07921.7 gi|352682561|ref|YP_004893085.1| - 0.41 10.5 8.3 1.9 8.4 2.9 2.9 1 1 1 2 2 2 0 Fibritin C-terminal region CAP_N PF01213.14 gi|352682561|ref|YP_004893085.1| - 0.42 9.8 5.2 5.6 6.1 3.6 2.5 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF555 PF04475.7 gi|352682561|ref|YP_004893085.1| - 0.44 10.5 6.3 6.7 6.7 0.2 3.3 2 1 2 4 4 2 0 Protein of unknown function (DUF555) CorA PF01544.13 gi|352682561|ref|YP_004893085.1| - 0.45 9.4 13.3 2.8 6.8 1.9 2.6 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein FemAB PF02388.11 gi|352682561|ref|YP_004893085.1| - 0.48 9.0 7.5 1.3 7.5 1.1 2.3 1 1 1 2 2 2 0 FemAB family dUTPase_2 PF08761.6 gi|352682561|ref|YP_004893085.1| - 0.59 10.1 2.7 2.1 8.3 0.2 2.6 1 1 2 3 3 3 0 dUTPase APG6 PF04111.7 gi|352682561|ref|YP_004893085.1| - 0.62 9.0 8.0 6.9 5.6 5.9 2.0 1 1 0 1 1 1 0 Autophagy protein Apg6 GLE1 PF07817.8 gi|352682561|ref|YP_004893085.1| - 0.63 8.9 4.5 0.37 9.6 0.4 2.0 1 1 1 2 2 2 0 GLE1-like protein AATF-Che1 PF13339.1 gi|352682561|ref|YP_004893085.1| - 0.64 10.1 7.3 1.2 9.3 1.1 2.4 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Med21 PF11221.3 gi|352682561|ref|YP_004893085.1| - 0.65 9.9 8.5 1.4 8.8 2.4 2.7 1 1 0 2 2 2 0 Subunit 21 of Mediator complex DUF4337 PF14235.1 gi|352682561|ref|YP_004893085.1| - 0.7 9.7 5.6 15 5.4 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4337) YjcZ PF13990.1 gi|352682561|ref|YP_004893085.1| - 0.74 8.8 3.5 11 5.0 0.6 2.3 1 1 1 2 2 2 0 YjcZ-like protein Phage_Mu_Gam PF07352.7 gi|352682561|ref|YP_004893085.1| - 0.74 9.3 11.2 8.4 5.8 0.1 3.4 1 1 2 3 3 3 0 Bacteriophage Mu Gam like protein DUF2959 PF11172.3 gi|352682561|ref|YP_004893085.1| - 0.81 9.4 8.4 4.1 7.0 1.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) MIS13 PF08202.6 gi|352682561|ref|YP_004893085.1| - 0.86 8.6 8.8 7.1 5.5 6.1 2.0 1 1 0 1 1 1 0 Mis12-Mtw1 protein family Lectin_N PF03954.9 gi|352682561|ref|YP_004893085.1| - 0.89 8.9 3.9 38 3.6 2.7 2.6 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain FlaC_arch PF05377.6 gi|352682561|ref|YP_004893085.1| - 0.9 9.4 14.1 7.8 6.4 0.6 4.4 2 2 3 5 5 4 0 Flagella accessory protein C (FlaC) DUF3407 PF11887.3 gi|352682561|ref|YP_004893085.1| - 0.94 8.7 5.3 3.7 6.7 0.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3407) Filo_VP35 PF02097.10 gi|352682561|ref|YP_004893085.1| - 0.96 8.5 6.3 3.5 6.7 2.5 2.1 1 1 1 2 2 2 0 Filoviridae VP35 MutS_IV PF05190.13 gi|352682561|ref|YP_004893085.1| - 1.1 9.4 6.7 12 6.1 0.3 3.8 2 2 0 3 3 3 0 MutS family domain IV CCDC-167 PF15188.1 gi|352682561|ref|YP_004893085.1| - 1.4 8.9 12.1 16 5.5 0.8 4.0 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 DUF1020 PF06255.8 gi|352682561|ref|YP_004893085.1| - 1.6 7.8 6.2 3.7 6.6 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1020) SNARE PF05739.14 gi|352682561|ref|YP_004893085.1| - 1.6 8.4 22.9 0.82 9.4 0.4 5.2 2 1 4 6 6 5 0 SNARE domain Corona_S2 PF01601.11 gi|352682561|ref|YP_004893085.1| - 1.7 6.6 7.6 0.99 7.4 1.0 2.0 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein BBP1_C PF15272.1 gi|352682561|ref|YP_004893085.1| - 1.7 8.1 11.5 0.85 9.1 1.7 2.1 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal CR6_interact PF10147.4 gi|352682561|ref|YP_004893085.1| - 2.1 7.6 10.2 6.1 6.0 1.5 2.2 1 1 1 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Halo_GVPC PF05465.8 gi|352682561|ref|YP_004893085.1| - 2.4 8.1 14.2 19 5.2 0.1 5.8 6 2 2 8 8 3 0 Halobacterial gas vesicle protein C (GVPC) repeat ISG65-75 PF11727.3 gi|352682561|ref|YP_004893085.1| - 2.4 7.1 14.8 2.3 7.1 3.0 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein UPF0449 PF15136.1 gi|352682561|ref|YP_004893085.1| - 2.6 8.3 5.8 17 5.6 0.3 3.3 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 Sipho_Gp157 PF05565.6 gi|352682561|ref|YP_004893085.1| - 3 7.4 15.8 4 6.9 3.4 2.7 1 1 0 2 2 2 0 Siphovirus Gp157 RapA_C PF12137.3 gi|352682561|ref|YP_004893085.1| - 3.3 6.4 11.5 1.8 7.2 0.2 2.6 1 1 0 2 2 2 0 RNA polymerase recycling family C-terminal DUF2450 PF10475.4 gi|352682561|ref|YP_004893085.1| - 3.6 6.4 6.8 1.5 7.6 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) Bacillus_HBL PF05791.6 gi|352682561|ref|YP_004893085.1| - 3.7 6.8 10.0 8.8 5.6 1.6 2.7 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) UvrB PF12344.3 gi|352682561|ref|YP_004893085.1| - 4.2 6.9 13.0 3.2 7.3 0.1 5.0 6 0 0 6 6 3 0 Ultra-violet resistance protein B Tho2 PF11262.3 gi|352682561|ref|YP_004893085.1| - 4.4 6.2 9.8 3 6.7 0.5 2.6 1 1 1 3 3 3 0 Transcription factor/nuclear export subunit protein 2 Mis14 PF08641.7 gi|352682561|ref|YP_004893085.1| - 7.3 6.6 13.2 7.3 6.6 4.7 2.2 1 1 0 2 2 2 0 Kinetochore protein Mis14 like MT PF12777.2 gi|352682561|ref|YP_004893085.1| - 8.1 5.0 14.4 2.1 7.0 2.2 2.1 1 1 1 2 2 2 0 Microtubule-binding stalk of dynein motor IncA PF04156.9 gi|352682562|ref|YP_004893086.1| - 0.00067 19.3 0.1 0.00085 18.9 0.1 1.2 1 0 0 1 1 1 1 IncA protein DUF4307 PF14155.1 gi|352682562|ref|YP_004893086.1| - 0.005 16.6 1.3 0.68 9.7 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4307) DUF1469 PF07332.6 gi|352682562|ref|YP_004893086.1| - 0.011 15.4 11.6 0.017 14.8 8.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|352682562|ref|YP_004893086.1| - 0.016 14.6 0.3 0.019 14.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Reticulon PF02453.12 gi|352682562|ref|YP_004893086.1| - 0.021 14.4 0.1 0.024 14.2 0.1 1.1 1 0 0 1 1 1 0 Reticulon Topo-VIb_trans PF09239.6 gi|352682562|ref|YP_004893086.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Topoisomerase VI B subunit, transducer SecD_SecF PF02355.11 gi|352682562|ref|YP_004893086.1| - 0.35 10.0 1.8 0.53 9.4 1.3 1.2 1 0 0 1 1 1 0 Protein export membrane protein T2SM PF04612.7 gi|352682562|ref|YP_004893086.1| - 0.57 9.9 7.4 1.8 8.3 0.1 2.1 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M Lysis_S PF04971.7 gi|352682562|ref|YP_004893086.1| - 0.83 9.3 3.1 0.63 9.7 1.1 1.6 1 1 1 2 2 2 0 Lysis protein S Glycos_transf_1 PF00534.15 gi|352682563|ref|YP_004893087.1| - 1.3e-16 60.5 0.0 4.6e-15 55.4 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352682563|ref|YP_004893087.1| - 1.6e-10 41.2 0.4 4e-10 39.9 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|352682563|ref|YP_004893087.1| - 3.4e-09 37.0 12.2 3.4e-09 37.0 8.4 2.0 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|352682563|ref|YP_004893087.1| - 0.0014 18.8 0.0 0.0025 18.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|352682563|ref|YP_004893087.1| - 0.0024 17.6 0.7 0.014 15.0 0.5 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 NicO PF03824.11 gi|352682566|ref|YP_004893090.1| - 0.0015 17.9 2.2 0.0015 17.9 1.6 2.5 2 1 1 3 3 3 1 High-affinity nickel-transport protein Phage_holin_2 PF04550.7 gi|352682566|ref|YP_004893090.1| - 0.0019 18.2 2.4 0.0039 17.2 0.1 2.4 1 1 1 2 2 2 1 Phage holin family 2 SdpI PF13630.1 gi|352682566|ref|YP_004893090.1| - 2.4 7.9 7.6 0.63 9.7 0.1 3.1 3 0 0 3 3 3 0 SdpI/YhfL protein family Hydantoinase_B PF02538.9 gi|352682567|ref|YP_004893091.1| - 6e-38 130.3 1.8 6.6e-38 130.2 1.2 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase ThiS PF02597.15 gi|352682567|ref|YP_004893091.1| - 0.0032 17.8 0.1 0.0041 17.5 0.1 1.2 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.16 gi|352682567|ref|YP_004893091.1| - 0.026 14.1 0.1 0.043 13.4 0.1 1.4 1 0 0 1 1 1 0 TrkA-C domain Myosin_N PF02736.14 gi|352682567|ref|YP_004893091.1| - 0.45 10.2 2.3 1.1 9.0 0.1 2.1 1 1 1 2 2 2 0 Myosin N-terminal SH3-like domain Hydantoinase_B PF02538.9 gi|352682568|ref|YP_004893092.1| - 2e-98 329.9 0.0 2.2e-98 329.8 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|352682569|ref|YP_004893093.1| - 3.5e-86 288.9 5.2 3.5e-86 288.9 3.6 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|352682569|ref|YP_004893093.1| - 6.1e-45 152.8 0.0 1.2e-44 151.9 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|352682569|ref|YP_004893093.1| - 0.00043 19.6 0.0 0.0029 16.9 0.0 2.1 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family AlaDh_PNT_C PF01262.16 gi|352682569|ref|YP_004893093.1| - 0.075 12.5 0.4 0.47 10.0 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Cas_Csa4 PF09703.5 gi|352682569|ref|YP_004893093.1| - 0.14 11.0 0.0 0.35 9.8 0.0 1.6 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csa4) Sugar_tr PF00083.19 gi|352682570|ref|YP_004893094.1| - 7.4e-26 90.7 32.2 1.9e-22 79.4 7.5 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|352682570|ref|YP_004893094.1| - 3.9e-23 81.7 64.0 1.6e-14 53.4 21.8 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|352682570|ref|YP_004893094.1| - 8.7e-05 21.0 38.2 0.00034 19.1 2.5 3.4 1 1 0 2 2 2 2 MFS/sugar transport protein SurE PF01975.12 gi|352682571|ref|YP_004893095.1| - 1.8e-52 177.5 0.0 2.3e-52 177.1 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE NDUF_B4 PF07225.7 gi|352682572|ref|YP_004893096.1| - 0.16 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) PRA1 PF03208.14 gi|352682572|ref|YP_004893096.1| - 1.4 8.2 9.4 1.3 8.3 5.5 1.7 1 1 0 1 1 1 0 PRA1 family protein DUF998 PF06197.8 gi|352682573|ref|YP_004893097.1| - 6e-24 84.3 24.4 6.9e-24 84.1 16.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.4 gi|352682573|ref|YP_004893097.1| - 0.00023 20.7 1.3 0.00041 19.8 0.8 1.5 1 1 0 1 1 1 1 Frag1/DRAM/Sfk1 family AA_permease PF00324.16 gi|352682574|ref|YP_004893098.1| - 7.4e-29 100.4 48.0 1.4e-28 99.5 33.3 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|352682574|ref|YP_004893098.1| - 3.6e-25 88.3 48.3 7.3e-25 87.3 33.5 1.4 1 1 0 1 1 1 1 Amino acid permease Sialidase_penC PF12135.3 gi|352682575|ref|YP_004893099.1| - 0.013 15.0 0.2 0.019 14.5 0.1 1.2 1 0 0 1 1 1 0 Sialidase enzyme penultimate C terminal domain Ubiq-Cytc-red_N PF09165.5 gi|352682576|ref|YP_004893100.1| - 0.11 12.7 0.1 0.28 11.5 0.1 1.7 1 0 0 1 1 1 0 Ubiquinol-cytochrome c reductase 8 kDa, N-terminal TauE PF01925.14 gi|352682577|ref|YP_004893101.1| - 3.3e-48 164.2 40.0 3.8e-48 164.0 27.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4234 PF14018.1 gi|352682577|ref|YP_004893101.1| - 0.13 12.0 1.7 17 5.2 0.2 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4234) DsbD_2 PF13386.1 gi|352682577|ref|YP_004893101.1| - 1.1 8.9 25.0 0.51 10.0 2.2 3.5 1 1 2 4 4 4 0 Cytochrome C biogenesis protein transmembrane region Rick_17kDa_Anti PF05433.10 gi|352682577|ref|YP_004893101.1| - 2.6 7.7 12.6 2.4 7.8 0.3 3.4 3 1 0 3 3 3 0 Glycine zipper 2TM domain MFS_1 PF07690.11 gi|352682578|ref|YP_004893102.1| - 5.9e-24 84.4 47.4 3e-12 45.9 18.5 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|352682578|ref|YP_004893102.1| - 0.012 15.6 0.3 0.012 15.6 0.2 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1228) ABC_membrane_3 PF13748.1 gi|352682579|ref|YP_004893103.1| - 0.32 10.0 4.1 0.44 9.5 2.8 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region CxxCxxCC PF03692.10 gi|352682580|ref|YP_004893104.1| - 3.3e-06 27.4 0.0 7.7e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Lactamase_B_2 PF12706.2 gi|352682581|ref|YP_004893105.1| - 5.9e-11 42.2 0.1 5.6e-10 39.0 0.1 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|352682581|ref|YP_004893105.1| - 1.4e-10 41.0 0.1 2.7e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352682581|ref|YP_004893105.1| - 2.2e-05 24.2 7.5 0.00014 21.6 4.8 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AFOR_C PF01314.13 gi|352682582|ref|YP_004893106.1| - 6.2e-122 406.9 0.0 7.5e-122 406.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|352682582|ref|YP_004893106.1| - 9.4e-81 269.9 0.4 1.6e-80 269.2 0.2 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Phosphorylase PF00343.15 gi|352682583|ref|YP_004893107.1| - 1.9e-10 39.3 0.0 3.5e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|352682583|ref|YP_004893107.1| - 2.2e-10 40.2 0.0 3.8e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|352682583|ref|YP_004893107.1| - 1.7e-06 28.1 0.0 5.1e-06 26.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 5-FTHF_cyc-lig PF01812.15 gi|352682584|ref|YP_004893108.1| - 7.8e-30 104.0 0.0 9.3e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Glyco_hydro_57 PF03065.10 gi|352682585|ref|YP_004893109.1| - 1.8e-73 247.5 0.0 6.2e-73 245.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|352682585|ref|YP_004893109.1| - 0.0031 17.1 0.0 0.006 16.2 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_transf_5 PF08323.6 gi|352682586|ref|YP_004893110.1| - 4.5e-36 124.5 0.0 7.4e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|352682586|ref|YP_004893110.1| - 5.4e-26 91.0 0.0 1.5e-25 89.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|352682586|ref|YP_004893110.1| - 1.4e-11 44.7 6.1 1.4e-11 44.7 4.3 2.9 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|352682586|ref|YP_004893110.1| - 2.9e-09 37.2 0.4 2.6e-08 34.0 0.1 2.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|352682586|ref|YP_004893110.1| - 7.6e-05 22.4 0.3 0.017 14.8 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|352682586|ref|YP_004893110.1| - 0.061 13.5 0.0 0.46 10.7 0.0 2.5 2 0 0 2 2 2 0 Glycosyl transferases group 1 NTP_transferase PF00483.18 gi|352682587|ref|YP_004893111.1| - 2e-35 122.2 0.0 2.3e-35 122.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|352682587|ref|YP_004893111.1| - 0.0003 20.8 0.0 0.00031 20.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF3686 PF12458.3 gi|352682587|ref|YP_004893111.1| - 0.0018 16.5 0.1 0.0027 16.0 0.1 1.1 1 0 0 1 1 1 1 ATPase involved in DNA repair Trp_syntA PF00290.15 gi|352682588|ref|YP_004893112.1| - 3.2e-20 71.7 0.0 5.3e-20 71.0 0.0 1.3 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|352682588|ref|YP_004893112.1| - 0.0033 16.7 0.1 0.0045 16.2 0.0 1.2 1 0 0 1 1 1 1 PcrB family IGPS PF00218.16 gi|352682588|ref|YP_004893112.1| - 0.11 11.5 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PALP PF00291.20 gi|352682589|ref|YP_004893113.1| - 3.3e-40 138.2 0.0 4.9e-40 137.6 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glycos_transf_3 PF00591.16 gi|352682590|ref|YP_004893114.1| - 9.6e-84 280.7 0.0 1.3e-83 280.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|352682590|ref|YP_004893114.1| - 3e-19 68.3 2.5 1.6e-18 66.0 0.7 2.5 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.17 gi|352682591|ref|YP_004893115.1| - 1.5e-18 67.0 0.0 1.9e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMF_TATA_bd PF12325.3 gi|352682592|ref|YP_004893116.1| - 0.019 14.6 0.8 0.034 13.8 0.6 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding MOR2-PAG1_mid PF14228.1 gi|352682592|ref|YP_004893116.1| - 0.038 11.5 0.0 0.045 11.3 0.0 1.0 1 0 0 1 1 1 0 Cell morphogenesis central region ADIP PF11559.3 gi|352682592|ref|YP_004893116.1| - 0.057 13.3 0.8 0.076 12.9 0.2 1.4 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF1192 PF06698.6 gi|352682592|ref|YP_004893116.1| - 0.067 13.0 2.0 0.22 11.3 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) Lge1 PF11488.3 gi|352682592|ref|YP_004893116.1| - 0.089 12.9 0.1 0.089 12.9 0.1 1.9 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 Reo_sigmaC PF04582.7 gi|352682592|ref|YP_004893116.1| - 0.13 11.4 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein FUSC PF04632.7 gi|352682592|ref|YP_004893116.1| - 0.25 9.7 4.3 0.31 9.4 2.9 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family ERM PF00769.14 gi|352682592|ref|YP_004893116.1| - 0.67 9.4 4.5 0.081 12.4 0.3 1.4 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Isochorismatase PF00857.15 gi|352682593|ref|YP_004893117.1| - 2.4e-36 125.2 0.0 2.7e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family KaiC PF06745.8 gi|352682594|ref|YP_004893118.1| - 1.4e-47 161.6 0.1 3.1e-24 85.3 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|352682594|ref|YP_004893118.1| - 5.1e-09 35.8 0.1 1.1e-08 34.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|352682594|ref|YP_004893118.1| - 7.8e-06 24.4 0.1 0.021 13.1 0.0 2.4 2 1 1 3 3 3 2 GvpD gas vesicle protein Rad51 PF08423.6 gi|352682594|ref|YP_004893118.1| - 8.6e-06 24.8 0.0 1.7e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Rad51 IstB_IS21 PF01695.12 gi|352682594|ref|YP_004893118.1| - 2.7e-05 23.6 0.0 9.6e-05 21.8 0.0 1.9 2 1 0 2 2 2 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|352682594|ref|YP_004893118.1| - 0.00023 20.2 0.0 0.00029 19.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PAXNEB PF05625.6 gi|352682594|ref|YP_004893118.1| - 0.00029 19.8 0.0 0.0019 17.1 0.0 1.9 2 0 0 2 2 2 1 PAXNEB protein RecA PF00154.16 gi|352682594|ref|YP_004893118.1| - 0.00038 19.6 0.0 0.00058 19.0 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|352682594|ref|YP_004893118.1| - 0.0012 18.5 0.0 0.0033 17.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|352682594|ref|YP_004893118.1| - 0.0025 16.7 0.0 0.01 14.7 0.0 2.0 3 0 0 3 3 3 1 DnaB-like helicase C terminal domain AAA_16 PF13191.1 gi|352682594|ref|YP_004893118.1| - 0.0041 17.1 0.0 0.0089 16.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|352682594|ref|YP_004893118.1| - 0.0065 16.6 0.0 0.027 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|352682594|ref|YP_004893118.1| - 0.0066 16.5 0.0 0.037 14.0 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|352682594|ref|YP_004893118.1| - 0.0069 16.1 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|352682594|ref|YP_004893118.1| - 0.013 14.9 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Sigma54_activat PF00158.21 gi|352682594|ref|YP_004893118.1| - 0.015 14.7 0.0 0.034 13.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain DAP3 PF10236.4 gi|352682594|ref|YP_004893118.1| - 0.017 14.1 0.0 0.027 13.4 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PhoH PF02562.11 gi|352682594|ref|YP_004893118.1| - 0.03 13.5 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein RecT PF03837.9 gi|352682594|ref|YP_004893118.1| - 0.076 12.2 0.0 0.51 9.5 0.0 2.1 2 0 0 2 2 2 0 RecT family AAA_18 PF13238.1 gi|352682594|ref|YP_004893118.1| - 0.13 12.5 0.0 0.22 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Ribosomal_L30 PF00327.15 gi|352682595|ref|YP_004893119.1| - 3.8e-08 32.8 0.1 5.9e-08 32.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.10 gi|352682596|ref|YP_004893120.1| - 1.8e-25 88.0 0.1 3.5e-25 87.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|352682596|ref|YP_004893120.1| - 4.2e-23 80.8 0.7 7e-23 80.1 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain RNase_HII PF01351.13 gi|352682597|ref|YP_004893121.1| - 2.8e-38 131.5 0.0 3.3e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Ribosomal_L37e PF01907.14 gi|352682598|ref|YP_004893122.1| - 0.0093 15.7 0.2 0.0094 15.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e zf-C2H2_4 PF13894.1 gi|352682598|ref|YP_004893122.1| - 0.019 15.2 0.4 0.028 14.7 0.3 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger zf-BED PF02892.10 gi|352682598|ref|YP_004893122.1| - 0.085 12.6 1.0 0.16 11.7 0.7 1.5 1 1 0 1 1 1 0 BED zinc finger DUF629 PF04780.7 gi|352682598|ref|YP_004893122.1| - 0.098 11.1 0.0 0.098 11.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) ROS_MUCR PF05443.6 gi|352682598|ref|YP_004893122.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein zf-C2H2 PF00096.21 gi|352682598|ref|YP_004893122.1| - 0.15 12.4 0.3 0.23 11.8 0.2 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type HEPN PF05168.9 gi|352682599|ref|YP_004893123.1| - 5.9e-11 42.2 0.1 6.3e-10 38.9 0.0 2.0 1 1 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|352682599|ref|YP_004893123.1| - 0.063 13.1 1.4 0.081 12.8 0.1 1.9 2 1 0 2 2 2 0 Archaeal PaREP1/PaREP8 family UDG PF03167.14 gi|352682600|ref|YP_004893124.1| - 9.3e-36 122.5 0.0 1.2e-35 122.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribosomal_L18e PF00828.14 gi|352682601|ref|YP_004893125.1| - 2.6e-32 111.8 1.3 3.1e-32 111.6 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|352682602|ref|YP_004893126.1| - 4.9e-57 193.4 18.6 6.6e-57 192.9 12.9 1.2 1 0 0 1 1 1 1 SecY translocase Methyltrn_RNA_3 PF02598.12 gi|352682603|ref|YP_004893127.1| - 4.5e-54 183.7 0.0 5.4e-54 183.5 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase VKOR PF07884.9 gi|352682604|ref|YP_004893128.1| - 2.9e-10 40.1 6.7 4.8e-10 39.4 4.7 1.3 1 1 0 1 1 1 1 Vitamin K epoxide reductase family DsbD PF02683.10 gi|352682608|ref|YP_004893132.1| - 1.4e-19 70.5 19.4 4.3e-19 68.9 13.5 1.8 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.1 gi|352682608|ref|YP_004893132.1| - 6.4e-06 26.3 0.0 2.2e-05 24.6 0.0 1.9 2 1 0 2 2 2 1 Thioredoxin-like domain DsbD_2 PF13386.1 gi|352682608|ref|YP_004893132.1| - 8.4e-05 22.3 29.6 8.4e-05 22.3 20.5 3.2 2 1 2 4 4 4 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_7 PF13899.1 gi|352682608|ref|YP_004893132.1| - 0.0023 17.9 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like YSIRK_signal PF04650.12 gi|352682608|ref|YP_004893132.1| - 3.3 7.3 10.3 7.3 6.2 2.1 3.1 2 0 0 2 2 2 0 YSIRK type signal peptide Ribosomal_L6 PF00347.18 gi|352682609|ref|YP_004893133.1| - 7.8e-15 55.1 3.9 5.8e-09 36.3 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Thioredoxin PF00085.15 gi|352682610|ref|YP_004893134.1| - 3e-09 36.4 0.0 4.6e-09 35.9 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|352682610|ref|YP_004893134.1| - 0.00021 21.4 1.0 0.016 15.4 0.7 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|352682610|ref|YP_004893134.1| - 0.0071 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.15 gi|352682610|ref|YP_004893134.1| - 0.0073 15.8 1.9 1.2 8.6 0.2 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain FANCL_C PF11793.3 gi|352682610|ref|YP_004893134.1| - 0.018 15.0 0.3 0.027 14.4 0.2 1.2 1 0 0 1 1 1 0 FANCL C-terminal domain Thioredoxin_4 PF13462.1 gi|352682610|ref|YP_004893134.1| - 0.087 12.8 0.4 0.76 9.7 0.3 2.0 1 1 0 1 1 1 0 Thioredoxin TraF PF13728.1 gi|352682610|ref|YP_004893134.1| - 0.16 11.4 0.1 0.3 10.5 0.1 1.6 1 1 0 1 1 1 0 F plasmid transfer operon protein Pyr_redox_2 PF07992.9 gi|352682611|ref|YP_004893135.1| - 1.8e-39 135.7 6.8 5.5e-20 72.1 0.0 3.9 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|352682611|ref|YP_004893135.1| - 1.3e-26 92.7 7.3 1.5e-21 76.5 0.5 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|352682611|ref|YP_004893135.1| - 4.6e-18 65.2 0.1 9.4e-18 64.2 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|352682611|ref|YP_004893135.1| - 6.3e-16 58.2 16.9 1.2e-07 30.9 0.2 4.2 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|352682611|ref|YP_004893135.1| - 3.2e-13 50.2 2.3 0.00012 22.1 0.0 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|352682611|ref|YP_004893135.1| - 4e-08 32.1 12.1 0.02 13.3 0.0 4.3 3 1 1 4 4 4 4 HI0933-like protein NAD_binding_8 PF13450.1 gi|352682611|ref|YP_004893135.1| - 1.9e-07 30.9 5.7 0.0006 19.7 0.2 3.5 4 0 0 4 4 4 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|352682611|ref|YP_004893135.1| - 3.5e-05 22.8 0.1 0.0027 16.6 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|352682611|ref|YP_004893135.1| - 8.5e-05 22.3 7.7 0.64 9.7 0.0 4.1 4 0 0 4 4 4 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|352682611|ref|YP_004893135.1| - 9.1e-05 21.4 13.5 0.023 13.5 0.2 3.7 2 2 2 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|352682611|ref|YP_004893135.1| - 0.00023 20.3 16.9 0.27 10.2 0.1 4.3 3 2 0 4 4 4 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|352682611|ref|YP_004893135.1| - 0.0011 18.5 1.4 1.3 8.5 0.0 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|352682611|ref|YP_004893135.1| - 0.0026 16.9 0.6 0.021 13.9 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|352682611|ref|YP_004893135.1| - 0.0041 16.0 0.6 0.0041 16.0 0.4 2.5 3 0 0 3 3 3 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|352682611|ref|YP_004893135.1| - 0.0068 16.6 0.9 4.2 7.6 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|352682611|ref|YP_004893135.1| - 0.012 15.2 0.2 0.012 15.2 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|352682611|ref|YP_004893135.1| - 0.012 14.2 0.5 0.012 14.2 0.3 2.5 3 0 0 3 3 3 0 Tryptophan halogenase GFO_IDH_MocA PF01408.17 gi|352682611|ref|YP_004893135.1| - 0.046 14.2 0.3 6 7.4 0.0 2.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold FAD_binding_2 PF00890.19 gi|352682611|ref|YP_004893135.1| - 0.07 11.9 20.6 1.2 7.8 3.5 4.5 2 2 3 5 5 5 0 FAD binding domain TrkA_N PF02254.13 gi|352682611|ref|YP_004893135.1| - 0.078 12.9 0.6 4.6 7.2 0.0 2.7 3 0 0 3 3 2 0 TrkA-N domain F420_oxidored PF03807.12 gi|352682611|ref|YP_004893135.1| - 0.094 13.1 2.8 0.8 10.1 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GMC_oxred_N PF00732.14 gi|352682611|ref|YP_004893135.1| - 0.095 11.8 0.0 0.26 10.4 0.0 1.8 2 0 0 2 2 1 0 GMC oxidoreductase Ldh_1_N PF00056.18 gi|352682612|ref|YP_004893136.1| - 2.9e-40 137.3 0.4 4e-40 136.9 0.3 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|352682612|ref|YP_004893136.1| - 1.1e-20 74.0 0.0 2.6e-20 72.8 0.0 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|352682612|ref|YP_004893136.1| - 0.00011 21.5 0.0 0.00039 19.7 0.0 1.8 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.9 gi|352682612|ref|YP_004893136.1| - 0.0033 16.8 2.0 0.014 14.7 1.4 1.9 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|352682612|ref|YP_004893136.1| - 0.44 10.3 1.9 1 9.1 1.3 1.6 1 0 0 1 1 1 0 ThiF family FAD_binding_3 PF01494.14 gi|352682612|ref|YP_004893136.1| - 0.6 9.1 2.1 0.91 8.4 1.4 1.2 1 0 0 1 1 1 0 FAD binding domain RNase_H2-Ydr279 PF09468.5 gi|352682613|ref|YP_004893137.1| - 0.53 9.4 9.9 0.62 9.2 6.9 1.1 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) Peptidase_S49_N PF08496.5 gi|352682613|ref|YP_004893137.1| - 1.5 8.5 8.9 1.8 8.3 6.2 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Thioredoxin_3 PF13192.1 gi|352682614|ref|YP_004893138.1| - 1.6e-14 53.4 0.4 6.8e-10 38.6 0.1 2.7 3 0 0 3 3 3 2 Thioredoxin domain Thioredoxin PF00085.15 gi|352682614|ref|YP_004893138.1| - 3.5e-09 36.2 0.0 4.1e-07 29.6 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|352682614|ref|YP_004893138.1| - 3.5e-06 27.1 0.5 0.0014 18.7 0.4 3.0 2 1 0 2 2 2 1 Thioredoxin-like domain TraF PF13728.1 gi|352682614|ref|YP_004893138.1| - 0.0061 16.0 0.0 0.05 13.0 0.0 2.1 2 0 0 2 2 2 1 F plasmid transfer operon protein TrbC_Ftype PF09673.5 gi|352682614|ref|YP_004893138.1| - 0.023 14.2 0.0 0.15 11.6 0.0 2.3 3 1 0 3 3 3 0 Type-F conjugative transfer system pilin assembly protein HyaE PF07449.6 gi|352682614|ref|YP_004893138.1| - 0.028 14.3 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Glutaredoxin PF00462.19 gi|352682614|ref|YP_004893138.1| - 0.048 13.6 1.2 0.83 9.6 0.1 3.0 3 0 0 3 3 3 0 Glutaredoxin DSBA PF01323.15 gi|352682614|ref|YP_004893138.1| - 0.073 12.6 0.0 0.19 11.2 0.0 1.8 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Ham1p_like PF01725.11 gi|352682615|ref|YP_004893139.1| - 4.8e-50 169.5 0.0 5.5e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family CBS PF00571.23 gi|352682616|ref|YP_004893140.1| - 5.9e-51 170.0 12.0 6.4e-16 57.8 0.0 4.1 4 0 0 4 4 4 4 CBS domain DUF3659 PF12396.3 gi|352682616|ref|YP_004893140.1| - 0.0074 15.9 0.8 3.6 7.3 0.0 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF3659) DEAD_assoc PF08494.6 gi|352682618|ref|YP_004893142.1| - 2.7e-37 128.3 0.4 8.5e-37 126.6 0.3 1.9 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|352682618|ref|YP_004893142.1| - 8.4e-33 113.2 0.0 6.4e-32 110.3 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|352682618|ref|YP_004893142.1| - 6.1e-13 48.4 0.0 2.1e-12 46.7 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|352682618|ref|YP_004893142.1| - 5.3e-09 36.1 0.0 9.4e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|352682618|ref|YP_004893142.1| - 0.006 15.4 0.0 0.014 14.2 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|352682618|ref|YP_004893142.1| - 0.036 14.1 3.2 1.6 8.9 0.3 4.5 3 2 1 4 4 4 0 AAA domain AAA_10 PF12846.2 gi|352682618|ref|YP_004893142.1| - 0.094 12.1 1.2 6.5 6.0 0.0 3.1 5 0 0 5 5 5 0 AAA-like domain DUF164 PF02591.10 gi|352682619|ref|YP_004893143.1| - 0.0058 16.4 0.2 0.0071 16.1 0.2 1.2 1 0 0 1 1 1 1 Putative zinc ribbon domain zf-TFIIB PF13453.1 gi|352682619|ref|YP_004893143.1| - 0.04 13.1 0.5 0.067 12.3 0.4 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger HpcH_HpaI PF03328.9 gi|352682620|ref|YP_004893144.1| - 5.2e-37 126.8 2.0 1.2e-35 122.3 0.2 2.5 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|352682620|ref|YP_004893144.1| - 6.1e-15 54.8 0.0 4.1e-10 39.0 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold CoA_transf_3 PF02515.12 gi|352682621|ref|YP_004893145.1| - 3.2e-48 163.4 0.0 4.5e-48 163.0 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III AMP-binding PF00501.23 gi|352682622|ref|YP_004893146.1| - 5.2e-82 275.4 0.0 6.4e-82 275.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352682622|ref|YP_004893146.1| - 1.4e-21 77.2 0.8 3.4e-21 75.9 0.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.11 gi|352682623|ref|YP_004893147.1| - 3.6e-22 78.5 68.9 4.1e-13 48.7 30.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|352682623|ref|YP_004893147.1| - 6.3e-18 64.5 39.7 1.3e-12 47.0 11.6 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|352682623|ref|YP_004893147.1| - 0.0027 17.4 16.0 0.053 13.3 0.3 4.5 3 1 0 4 4 4 3 MFS_1 like family MFS_2 PF13347.1 gi|352682623|ref|YP_004893147.1| - 0.0045 15.4 6.0 0.0045 15.4 4.1 3.1 1 1 1 2 2 2 1 MFS/sugar transport protein Methyltransf_11 PF08241.7 gi|352682624|ref|YP_004893148.1| - 6.1e-10 39.4 0.0 1e-09 38.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352682624|ref|YP_004893148.1| - 1.7e-08 34.3 0.0 2.1e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352682624|ref|YP_004893148.1| - 0.00012 22.4 0.0 0.0007 19.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352682624|ref|YP_004893148.1| - 0.00073 19.9 0.0 0.012 16.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Radical_SAM PF04055.16 gi|352682625|ref|YP_004893149.1| - 1.1e-22 80.9 0.0 2.6e-22 79.7 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|352682625|ref|YP_004893149.1| - 7.5e-06 25.8 0.0 3.3e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|352682625|ref|YP_004893149.1| - 0.0049 16.9 0.0 0.013 15.6 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PQQ_3 PF13570.1 gi|352682626|ref|YP_004893150.1| - 0.02 15.1 1.7 0.02 15.1 1.2 7.1 7 2 1 8 8 8 0 PQQ-like domain DUF3312 PF11768.3 gi|352682626|ref|YP_004893150.1| - 0.076 11.2 0.0 0.11 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3312) VID27 PF08553.5 gi|352682626|ref|YP_004893150.1| - 0.24 9.5 0.1 0.34 9.0 0.1 1.1 1 0 0 1 1 1 0 VID27 cytoplasmic protein UPF0051 PF01458.12 gi|352682627|ref|YP_004893151.1| - 1.1e-25 90.4 0.0 1.9e-25 89.6 0.0 1.3 2 0 0 2 2 2 1 Uncharacterized protein family (UPF0051) NUDIX PF00293.23 gi|352682628|ref|YP_004893152.1| - 1.3e-20 73.3 0.2 1.6e-20 73.1 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|352682628|ref|YP_004893152.1| - 0.022 14.2 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain Ribosomal_L34 PF00468.12 gi|352682628|ref|YP_004893152.1| - 0.86 9.3 3.3 4.5 7.0 0.3 2.2 2 0 0 2 2 2 0 Ribosomal protein L34 Topoisom_bac PF01131.15 gi|352682630|ref|YP_004893154.1| - 2.8e-101 339.3 0.0 3.3e-101 339.0 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|352682630|ref|YP_004893154.1| - 6.6e-15 54.9 0.0 1.7e-14 53.6 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|352682630|ref|YP_004893154.1| - 0.029 14.3 0.0 0.083 12.9 0.0 1.8 1 0 0 1 1 1 0 Toprim domain UB2H PF14814.1 gi|352682630|ref|YP_004893154.1| - 0.049 13.3 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain CALCOCO1 PF07888.6 gi|352682630|ref|YP_004893154.1| - 0.14 10.4 0.0 0.2 9.9 0.0 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like GBP_PSP PF02425.10 gi|352682630|ref|YP_004893154.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Paralytic/GBP/PSP peptide Helicase_C_2 PF13307.1 gi|352682632|ref|YP_004893156.1| - 1.7e-25 89.8 0.0 2.9e-25 89.1 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|352682632|ref|YP_004893156.1| - 7.8e-23 80.7 0.0 1.4e-22 79.9 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|352682632|ref|YP_004893156.1| - 8.3e-10 38.4 0.0 2.4e-06 27.1 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|352682632|ref|YP_004893156.1| - 5e-07 29.7 0.0 8.5e-05 22.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|352682632|ref|YP_004893156.1| - 0.0023 17.6 1.1 0.022 14.5 0.2 2.7 3 0 0 3 3 3 1 Part of AAA domain PhoH PF02562.11 gi|352682632|ref|YP_004893156.1| - 0.0032 16.7 0.1 0.0077 15.4 0.0 1.6 2 0 0 2 2 2 1 PhoH-like protein AAA_25 PF13481.1 gi|352682632|ref|YP_004893156.1| - 0.0037 16.6 0.0 0.017 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|352682632|ref|YP_004893156.1| - 0.0092 16.1 0.0 9.8 6.3 0.0 3.1 2 1 1 3 3 3 1 AAA domain SNF2_N PF00176.18 gi|352682632|ref|YP_004893156.1| - 0.21 10.3 0.0 0.4 9.4 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain PIN PF01850.16 gi|352682632|ref|YP_004893156.1| - 0.97 9.7 6.8 2.4 8.5 0.3 2.9 2 1 1 3 3 3 0 PIN domain DAO PF01266.19 gi|352682633|ref|YP_004893157.1| - 7e-41 140.3 0.7 8.3e-41 140.0 0.5 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|352682633|ref|YP_004893157.1| - 3.6e-07 30.1 0.5 1e-06 28.6 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|352682633|ref|YP_004893157.1| - 3.5e-06 27.0 1.0 0.0016 18.3 0.2 2.4 1 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|352682633|ref|YP_004893157.1| - 1.6e-05 24.1 1.1 3.4e-05 23.0 0.3 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|352682633|ref|YP_004893157.1| - 2.7e-05 24.3 0.1 0.0012 18.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|352682633|ref|YP_004893157.1| - 5.8e-05 22.1 0.7 7.7e-05 21.7 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|352682633|ref|YP_004893157.1| - 0.00099 19.4 0.8 0.0022 18.3 0.5 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|352682633|ref|YP_004893157.1| - 0.0029 17.0 0.2 0.006 15.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1884 PF08967.5 gi|352682633|ref|YP_004893157.1| - 0.0047 16.9 0.0 3.3 7.8 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF1884) Lycopene_cycl PF05834.7 gi|352682633|ref|YP_004893157.1| - 0.0056 15.6 0.2 2.6 6.8 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|352682633|ref|YP_004893157.1| - 0.0086 14.7 0.2 0.12 10.9 0.1 2.0 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.9 gi|352682633|ref|YP_004893157.1| - 0.01 14.3 0.2 0.023 13.1 0.1 1.6 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|352682633|ref|YP_004893157.1| - 0.01 14.9 1.8 0.016 14.2 0.1 2.1 3 0 0 3 3 3 0 Thi4 family ApbA PF02558.11 gi|352682633|ref|YP_004893157.1| - 0.012 15.1 0.1 0.019 14.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|352682633|ref|YP_004893157.1| - 0.04 14.1 0.0 0.085 13.1 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|352682633|ref|YP_004893157.1| - 0.086 12.4 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|352682633|ref|YP_004893157.1| - 0.23 11.1 3.1 2.8 7.6 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.17 gi|352682633|ref|YP_004893157.1| - 0.39 9.5 1.0 0.69 8.7 0.3 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A AA_permease_2 PF13520.1 gi|352682634|ref|YP_004893158.1| - 2.1e-12 46.3 17.0 2.7e-12 45.9 11.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|352682634|ref|YP_004893158.1| - 6.1e-11 41.3 16.2 1.4e-10 40.1 10.7 1.7 1 1 0 1 1 1 1 Amino acid permease Chloroplast_duf PF14476.1 gi|352682634|ref|YP_004893158.1| - 0.041 12.6 1.1 0.069 11.9 0.8 1.5 1 0 0 1 1 1 0 Petal formation-expressed SNO PF01174.14 gi|352682634|ref|YP_004893158.1| - 0.044 13.4 0.1 0.36 10.4 0.0 2.3 1 1 2 3 3 3 0 SNO glutamine amidotransferase family EcsB PF05975.7 gi|352682634|ref|YP_004893158.1| - 0.15 10.4 9.9 0.015 13.7 3.3 1.7 1 1 0 1 1 1 0 Bacterial ABC transporter protein EcsB AA_permease PF00324.16 gi|352682635|ref|YP_004893159.1| - 1.1e-10 40.5 12.8 1.3e-10 40.2 8.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|352682635|ref|YP_004893159.1| - 7.9e-07 27.9 14.0 9.2e-07 27.7 9.7 1.0 1 0 0 1 1 1 1 Amino acid permease Helicase_RecD PF05127.9 gi|352682636|ref|YP_004893160.1| - 4.7e-55 185.9 0.0 7.2e-55 185.3 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|352682636|ref|YP_004893160.1| - 2.6e-48 163.9 0.0 1.2e-47 161.7 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|352682636|ref|YP_004893160.1| - 7.6e-28 96.0 0.0 4.3e-27 93.6 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|352682636|ref|YP_004893160.1| - 3.8e-09 36.5 0.0 3.4e-06 27.0 0.0 2.5 2 0 0 2 2 2 2 Possible tRNA binding domain Acetyltransf_1 PF00583.19 gi|352682636|ref|YP_004893160.1| - 3.6e-06 26.8 0.0 1e-05 25.4 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|352682636|ref|YP_004893160.1| - 5.7e-05 23.2 0.0 0.00017 21.6 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TPP_enzyme_C PF02775.16 gi|352682637|ref|YP_004893161.1| - 7.6e-35 119.7 0.2 1.3e-34 118.9 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|352682637|ref|YP_004893161.1| - 9.7e-21 73.4 0.0 2e-20 72.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|352682638|ref|YP_004893162.1| - 4.1e-56 190.0 0.2 6.3e-56 189.4 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|352682638|ref|YP_004893162.1| - 6.2e-34 117.3 0.1 1.4e-33 116.2 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|352682638|ref|YP_004893162.1| - 0.02 14.3 1.1 0.038 13.4 0.7 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Macro PF01661.16 gi|352682640|ref|YP_004893164.1| - 3e-35 120.6 0.1 3.9e-35 120.3 0.1 1.1 1 0 0 1 1 1 1 Macro domain Lactamase_B PF00753.22 gi|352682641|ref|YP_004893165.1| - 1.8e-16 60.4 3.6 2.7e-16 59.7 2.5 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|352682641|ref|YP_004893165.1| - 5.8e-06 25.9 0.1 8.2e-06 25.5 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HAD_2 PF13419.1 gi|352682642|ref|YP_004893166.1| - 2e-25 89.9 0.0 2.3e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|352682642|ref|YP_004893166.1| - 6.9e-10 39.6 0.0 6.3e-08 33.2 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|352682642|ref|YP_004893166.1| - 1.7e-06 27.6 0.0 3.9e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|352682642|ref|YP_004893166.1| - 3.8e-06 27.2 0.0 6.4e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|352682642|ref|YP_004893166.1| - 0.0032 17.0 0.0 1.6 8.2 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|352682642|ref|YP_004893166.1| - 0.089 12.0 0.0 1.1 8.4 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DUF996 PF06195.8 gi|352682643|ref|YP_004893167.1| - 0.041 13.8 35.7 0.036 14.0 8.2 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF996) Claudin_2 PF13903.1 gi|352682643|ref|YP_004893167.1| - 3.9 7.1 29.1 0.16 11.6 9.3 2.5 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DNA_pol_B PF00136.16 gi|352682644|ref|YP_004893168.1| - 7.2e-05 21.7 0.0 0.009 14.8 0.0 2.2 2 0 0 2 2 2 2 DNA polymerase family B Replic_Relax PF13814.1 gi|352682645|ref|YP_004893169.1| - 0.094 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Replication-relaxation GTP_cyclohydroI PF01227.17 gi|352682647|ref|YP_004893171.1| - 1.9e-46 157.6 0.0 2.3e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I CbiZ PF01955.13 gi|352682649|ref|YP_004893173.1| - 2.8e-37 128.3 0.1 3.1e-37 128.2 0.1 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Glyco_tranf_2_3 PF13641.1 gi|352682650|ref|YP_004893174.1| - 8.4e-24 84.6 0.1 1.1e-23 84.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|352682650|ref|YP_004893174.1| - 9.9e-23 80.6 0.0 1.2e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|352682650|ref|YP_004893174.1| - 2.2e-05 23.8 0.0 3.4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|352682650|ref|YP_004893174.1| - 2.4e-05 24.1 0.0 3.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 NTP_transf_3 PF12804.2 gi|352682650|ref|YP_004893174.1| - 0.00024 21.2 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|352682650|ref|YP_004893174.1| - 0.00078 19.7 0.1 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Isochorismatase PF00857.15 gi|352682651|ref|YP_004893175.1| - 2.3e-42 144.9 0.0 2.6e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family SNARE PF05739.14 gi|352682652|ref|YP_004893176.1| - 0.0027 17.3 2.6 0.13 12.0 0.8 2.5 2 0 0 2 2 2 1 SNARE domain Sec20 PF03908.8 gi|352682652|ref|YP_004893176.1| - 0.02 14.5 0.5 0.039 13.6 0.1 1.6 2 0 0 2 2 2 0 Sec20 WXG100 PF06013.7 gi|352682652|ref|YP_004893176.1| - 0.026 14.5 0.6 6.6 6.8 0.1 3.0 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Baculo_PEP_C PF04513.7 gi|352682652|ref|YP_004893176.1| - 0.034 13.9 2.4 1.2 8.9 0.7 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Ala_racemase_N PF01168.15 gi|352682652|ref|YP_004893176.1| - 0.038 13.5 0.3 0.051 13.1 0.2 1.2 1 0 0 1 1 1 0 Alanine racemase, N-terminal domain UBN2 PF14223.1 gi|352682652|ref|YP_004893176.1| - 0.056 13.2 0.5 3.5 7.4 0.0 2.2 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type Apolipoprotein PF01442.13 gi|352682652|ref|YP_004893176.1| - 0.076 12.5 2.4 0.12 11.8 1.6 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain PilJ PF13675.1 gi|352682652|ref|YP_004893176.1| - 0.091 13.0 0.8 0.95 9.8 0.1 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term FlgN PF05130.7 gi|352682652|ref|YP_004893176.1| - 0.13 12.4 12.4 1.6 8.9 3.1 2.5 1 1 1 2 2 2 0 FlgN protein Prominin PF05478.6 gi|352682652|ref|YP_004893176.1| - 0.14 9.6 0.8 0.17 9.3 0.5 1.0 1 0 0 1 1 1 0 Prominin BLOC1_2 PF10046.4 gi|352682652|ref|YP_004893176.1| - 0.26 11.4 1.7 9.2 6.4 0.1 2.6 1 1 2 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.3 gi|352682652|ref|YP_004893176.1| - 0.28 11.0 2.5 2.7 7.8 0.7 2.4 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding FliT PF05400.8 gi|352682652|ref|YP_004893176.1| - 0.32 11.4 13.5 0.13 12.6 1.9 2.9 1 1 2 3 3 3 0 Flagellar protein FliT Snapin_Pallidin PF14712.1 gi|352682652|ref|YP_004893176.1| - 0.35 11.2 3.5 0.72 10.2 0.5 2.4 2 1 1 3 3 3 0 Snapin/Pallidin MutS_III PF05192.13 gi|352682652|ref|YP_004893176.1| - 0.74 9.5 4.3 0.94 9.2 3.0 1.1 1 0 0 1 1 1 0 MutS domain III Auto_anti-p27 PF06677.7 gi|352682653|ref|YP_004893177.1| - 1.6e-15 56.5 0.1 2.6e-15 55.8 0.1 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|352682653|ref|YP_004893177.1| - 9e-06 25.2 0.3 1.6e-05 24.4 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|352682653|ref|YP_004893177.1| - 0.00011 21.4 2.9 0.00018 20.7 2.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-FPG_IleRS PF06827.9 gi|352682653|ref|YP_004893177.1| - 0.00085 18.8 1.6 0.0017 17.9 1.1 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|352682653|ref|YP_004893177.1| - 0.0043 16.8 0.2 0.0065 16.2 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|352682653|ref|YP_004893177.1| - 0.0075 16.0 0.4 0.0075 16.0 0.3 1.8 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|352682653|ref|YP_004893177.1| - 0.0077 16.2 0.4 0.86 9.6 0.1 2.2 2 0 0 2 2 2 1 zinc-finger DNA_ligase_ZBD PF03119.11 gi|352682653|ref|YP_004893177.1| - 0.01 15.5 1.6 0.01 15.5 1.1 2.5 2 1 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.9 gi|352682653|ref|YP_004893177.1| - 0.01 15.7 0.1 2 8.4 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|352682653|ref|YP_004893177.1| - 0.013 15.2 0.2 0.02 14.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|352682653|ref|YP_004893177.1| - 0.013 15.4 0.6 5.4 7.0 0.2 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|352682653|ref|YP_004893177.1| - 0.014 15.2 0.2 0.019 14.8 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L37ae protein family CpXC PF14353.1 gi|352682653|ref|YP_004893177.1| - 0.036 14.0 0.0 0.042 13.8 0.0 1.2 1 0 0 1 1 1 0 CpXC protein Sgf11 PF08209.6 gi|352682653|ref|YP_004893177.1| - 0.066 12.5 2.0 0.49 9.7 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) A2L_zn_ribbon PF08792.5 gi|352682653|ref|YP_004893177.1| - 0.075 12.5 0.8 0.13 11.7 0.6 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Ogr_Delta PF04606.7 gi|352682653|ref|YP_004893177.1| - 0.079 12.6 1.7 1.2 8.9 0.3 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|352682653|ref|YP_004893177.1| - 0.08 12.1 4.8 2.7 7.3 3.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|352682653|ref|YP_004893177.1| - 0.1 12.2 0.7 0.26 10.9 0.3 1.8 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like RRN7 PF11781.3 gi|352682653|ref|YP_004893177.1| - 0.11 12.0 2.6 0.19 11.2 1.8 1.3 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2296 PF10058.4 gi|352682653|ref|YP_004893177.1| - 0.11 12.2 0.4 10 5.9 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Lar_restr_allev PF14354.1 gi|352682653|ref|YP_004893177.1| - 0.13 12.5 1.1 0.25 11.6 0.7 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Gin PF10764.4 gi|352682653|ref|YP_004893177.1| - 0.15 11.7 0.7 3.6 7.3 0.1 2.2 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin zf-IS66 PF13005.2 gi|352682653|ref|YP_004893177.1| - 0.29 11.1 2.5 1.7 8.6 0.1 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1610 PF07754.6 gi|352682653|ref|YP_004893177.1| - 0.36 11.0 4.7 0.39 10.8 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rad50_zn_hook PF04423.9 gi|352682653|ref|YP_004893177.1| - 0.92 9.0 3.5 0.66 9.4 0.1 2.5 3 2 0 3 3 3 0 Rad50 zinc hook motif zf-C2H2_6 PF13912.1 gi|352682653|ref|YP_004893177.1| - 2.5 8.1 4.3 25 4.9 0.1 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger APH PF01636.18 gi|352682654|ref|YP_004893178.1| - 2.7e-05 24.0 0.3 0.0074 16.0 0.2 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|352682654|ref|YP_004893178.1| - 4.3e-05 22.9 0.0 6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family PUA PF01472.15 gi|352682655|ref|YP_004893179.1| - 9.6e-19 66.8 1.6 3.1e-18 65.2 0.1 2.0 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.5 gi|352682655|ref|YP_004893179.1| - 0.0029 17.3 0.3 0.015 15.0 0.1 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF1947) HTH_31 PF13560.1 gi|352682656|ref|YP_004893180.1| - 8.4e-09 35.5 6.2 3.4e-08 33.5 4.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|352682656|ref|YP_004893180.1| - 1.2e-08 34.8 0.2 4.4e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|352682656|ref|YP_004893180.1| - 1.6e-08 34.2 0.2 6.3e-08 32.3 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_17 PF12728.2 gi|352682656|ref|YP_004893180.1| - 1.3e-05 25.3 0.9 0.11 12.8 0.0 3.9 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|352682656|ref|YP_004893180.1| - 0.00021 20.8 0.8 0.051 13.2 0.1 3.8 5 0 0 5 5 5 1 HTH domain HTH_25 PF13413.1 gi|352682656|ref|YP_004893180.1| - 0.00055 19.5 1.5 0.0013 18.3 1.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|352682656|ref|YP_004893180.1| - 0.00071 19.1 0.2 0.005 16.4 0.0 2.5 2 1 0 2 2 2 1 Homeodomain-like domain MerR PF00376.18 gi|352682656|ref|YP_004893180.1| - 0.0033 16.9 0.2 0.018 14.5 0.1 2.3 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.1 gi|352682656|ref|YP_004893180.1| - 0.0037 17.0 0.1 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_22 PF13309.1 gi|352682656|ref|YP_004893180.1| - 0.005 16.5 0.4 0.016 14.9 0.1 2.0 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.10 gi|352682656|ref|YP_004893180.1| - 0.016 15.0 0.0 0.042 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|352682656|ref|YP_004893180.1| - 0.037 14.0 0.2 0.18 11.8 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|352682656|ref|YP_004893180.1| - 0.076 12.8 0.0 44 4.0 0.0 3.1 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family Sigma70_r4 PF04545.11 gi|352682656|ref|YP_004893180.1| - 0.079 12.2 3.0 0.2 11.0 0.5 2.5 2 1 1 3 3 3 0 Sigma-70, region 4 Phage_AlpA PF05930.7 gi|352682656|ref|YP_004893180.1| - 0.12 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) TRM PF02005.11 gi|352682657|ref|YP_004893181.1| - 6.3e-80 268.9 0.0 1.4e-79 267.7 0.0 1.5 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|352682657|ref|YP_004893181.1| - 0.0013 18.6 0.1 0.0034 17.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352682657|ref|YP_004893181.1| - 0.0021 17.6 0.0 0.0043 16.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|352682657|ref|YP_004893181.1| - 0.004 16.5 0.0 0.0066 15.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|352682657|ref|YP_004893181.1| - 0.016 14.5 0.0 0.03 13.6 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_16 PF10294.4 gi|352682657|ref|YP_004893181.1| - 0.016 14.6 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Met_10 PF02475.11 gi|352682657|ref|YP_004893181.1| - 0.037 13.6 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|352682657|ref|YP_004893181.1| - 0.074 13.4 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain AAA_18 PF13238.1 gi|352682658|ref|YP_004893182.1| - 2.1e-12 47.4 0.0 3.3e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352682658|ref|YP_004893182.1| - 1.1e-08 35.9 0.1 2.2e-08 34.9 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|352682658|ref|YP_004893182.1| - 3.3e-06 27.0 0.0 5.3e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|352682658|ref|YP_004893182.1| - 0.0049 16.2 0.4 0.44 9.8 0.0 2.5 1 1 1 2 2 2 1 Thymidylate kinase ADK PF00406.17 gi|352682658|ref|YP_004893182.1| - 0.016 15.1 0.1 0.054 13.3 0.0 1.8 1 1 0 1 1 1 0 Adenylate kinase KaiC PF06745.8 gi|352682658|ref|YP_004893182.1| - 0.02 14.0 1.1 0.16 11.0 0.1 2.3 2 1 1 3 3 3 0 KaiC TetR_N PF00440.18 gi|352682658|ref|YP_004893182.1| - 0.023 14.3 0.1 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family SKI PF01202.17 gi|352682658|ref|YP_004893182.1| - 0.05 13.4 0.4 0.11 12.4 0.3 1.7 1 1 0 1 1 1 0 Shikimate kinase CoaE PF01121.15 gi|352682658|ref|YP_004893182.1| - 0.14 11.5 0.4 1.2 8.5 0.1 2.1 2 1 0 2 2 2 0 Dephospho-CoA kinase RNA_binding PF01877.12 gi|352682659|ref|YP_004893183.1| - 3.3e-23 81.9 0.0 3.9e-23 81.7 0.0 1.1 1 0 0 1 1 1 1 RNA binding UPF0020 PF01170.13 gi|352682660|ref|YP_004893184.1| - 2e-16 60.0 0.0 3.6e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|352682660|ref|YP_004893184.1| - 3.1e-12 46.5 0.1 7.1e-12 45.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352682660|ref|YP_004893184.1| - 0.0016 18.9 0.0 0.0032 17.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|352682660|ref|YP_004893184.1| - 0.0093 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 DNA methylase MethyltransfD12 PF02086.10 gi|352682660|ref|YP_004893184.1| - 0.012 15.0 0.1 0.027 13.9 0.0 1.6 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.1 gi|352682660|ref|YP_004893184.1| - 0.017 14.7 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352682660|ref|YP_004893184.1| - 0.02 15.4 0.0 0.032 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352682660|ref|YP_004893184.1| - 0.1 13.0 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF373 PF04123.8 gi|352682661|ref|YP_004893185.1| - 1.2e-83 280.9 18.0 1.5e-83 280.7 12.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) AAA_13 PF13166.1 gi|352682662|ref|YP_004893186.1| - 6e-08 31.6 36.5 7.2e-05 21.4 8.0 2.1 1 1 1 2 2 2 2 AAA domain MscS_porin PF12795.2 gi|352682662|ref|YP_004893186.1| - 7.7e-08 31.9 36.1 1.7e-05 24.2 7.7 2.4 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain Snapin_Pallidin PF14712.1 gi|352682662|ref|YP_004893186.1| - 1.9e-07 31.2 32.6 0.0087 16.3 5.0 4.4 2 2 2 4 4 4 3 Snapin/Pallidin Baculo_PEP_C PF04513.7 gi|352682662|ref|YP_004893186.1| - 2.9e-07 30.3 10.8 0.00016 21.5 0.4 3.3 2 1 1 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|352682662|ref|YP_004893186.1| - 5.8e-07 29.0 13.6 0.041 13.0 0.9 3.3 2 2 1 3 3 3 3 Reovirus sigma C capsid protein IncA PF04156.9 gi|352682662|ref|YP_004893186.1| - 1.2e-06 28.2 42.1 0.0002 21.0 8.0 2.8 2 1 0 2 2 2 2 IncA protein FliJ PF02050.11 gi|352682662|ref|YP_004893186.1| - 1.4e-06 28.3 35.0 0.00028 20.9 4.3 4.4 2 2 2 4 4 4 2 Flagellar FliJ protein TPR_MLP1_2 PF07926.7 gi|352682662|ref|YP_004893186.1| - 1.9e-06 27.6 40.3 0.00036 20.2 3.1 4.6 2 1 2 4 4 4 3 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|352682662|ref|YP_004893186.1| - 3.2e-06 26.0 46.5 0.00073 18.3 9.9 3.3 1 1 2 3 3 3 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|352682662|ref|YP_004893186.1| - 1e-05 25.4 40.5 0.00072 19.4 6.9 3.5 2 1 1 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TBPIP PF07106.8 gi|352682662|ref|YP_004893186.1| - 1.6e-05 24.5 40.3 0.01 15.4 4.6 4.3 1 1 4 5 5 5 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) APG6 PF04111.7 gi|352682662|ref|YP_004893186.1| - 2e-05 23.7 39.9 0.0012 17.9 10.7 3.1 2 1 1 3 3 3 2 Autophagy protein Apg6 Macoilin PF09726.4 gi|352682662|ref|YP_004893186.1| - 3e-05 22.5 35.0 0.0022 16.4 11.5 2.1 2 0 0 2 2 2 2 Transmembrane protein DUF972 PF06156.8 gi|352682662|ref|YP_004893186.1| - 4.7e-05 23.7 32.1 0.11 12.9 1.9 4.3 2 2 2 4 4 4 3 Protein of unknown function (DUF972) EzrA PF06160.7 gi|352682662|ref|YP_004893186.1| - 6.6e-05 21.2 11.4 6.6e-05 21.2 7.9 2.9 1 1 2 3 3 3 2 Septation ring formation regulator, EzrA ADIP PF11559.3 gi|352682662|ref|YP_004893186.1| - 8.2e-05 22.5 45.3 0.0017 18.2 4.7 4.1 2 2 2 4 4 4 2 Afadin- and alpha -actinin-Binding Nup54 PF13874.1 gi|352682662|ref|YP_004893186.1| - 9e-05 22.1 31.7 0.00068 19.3 4.6 3.6 2 1 1 3 3 3 2 Nucleoporin complex subunit 54 FlaC_arch PF05377.6 gi|352682662|ref|YP_004893186.1| - 9.9e-05 22.1 28.4 0.00067 19.4 1.8 5.9 2 2 4 6 6 5 1 Flagella accessory protein C (FlaC) WEMBL PF05701.6 gi|352682662|ref|YP_004893186.1| - 0.00012 20.7 41.4 0.0049 15.3 7.6 2.3 1 1 1 2 2 2 1 Weak chloroplast movement under blue light IFT57 PF10498.4 gi|352682662|ref|YP_004893186.1| - 0.00012 20.9 35.0 0.0091 14.7 3.7 3.1 1 1 2 3 3 3 2 Intra-flagellar transport protein 57 Bacillus_HBL PF05791.6 gi|352682662|ref|YP_004893186.1| - 0.00012 21.4 25.7 0.42 9.9 1.1 4.1 1 1 3 4 4 4 2 Bacillus haemolytic enterotoxin (HBL) DUF4200 PF13863.1 gi|352682662|ref|YP_004893186.1| - 0.00014 21.7 52.4 0.015 15.1 7.4 4.4 2 2 2 4 4 4 1 Domain of unknown function (DUF4200) Myosin_tail_1 PF01576.14 gi|352682662|ref|YP_004893186.1| - 0.00017 19.5 11.9 0.00017 19.5 8.2 2.0 1 1 0 2 2 2 1 Myosin tail DUF4530 PF15039.1 gi|352682662|ref|YP_004893186.1| - 0.00027 20.8 3.4 0.12 12.3 0.0 2.9 2 1 1 3 3 2 1 Domain of unknown function (DUF4530) TMF_TATA_bd PF12325.3 gi|352682662|ref|YP_004893186.1| - 0.00028 20.5 38.4 0.015 15.0 5.9 4.7 2 2 2 4 4 4 2 TATA element modulatory factor 1 TATA binding DUF4201 PF13870.1 gi|352682662|ref|YP_004893186.1| - 0.00037 19.9 44.8 0.013 14.9 8.8 4.0 2 2 1 3 3 3 1 Domain of unknown function (DUF4201) Atg14 PF10186.4 gi|352682662|ref|YP_004893186.1| - 0.00037 19.5 51.3 0.12 11.2 3.1 4.0 1 1 2 4 4 4 3 UV radiation resistance protein and autophagy-related subunit 14 DUF948 PF06103.6 gi|352682662|ref|YP_004893186.1| - 0.00038 20.2 14.2 0.33 10.8 0.5 4.3 2 2 2 4 4 4 1 Bacterial protein of unknown function (DUF948) ATG16 PF08614.6 gi|352682662|ref|YP_004893186.1| - 0.00055 19.8 43.2 0.079 12.7 9.2 4.0 2 2 1 3 3 3 2 Autophagy protein 16 (ATG16) AAA_27 PF13514.1 gi|352682662|ref|YP_004893186.1| - 0.0006 17.6 32.2 0.0092 13.7 11.7 2.2 2 0 0 2 2 2 2 AAA domain Laminin_II PF06009.7 gi|352682662|ref|YP_004893186.1| - 0.00071 19.3 35.7 0.0078 15.9 6.9 3.5 2 2 1 3 3 3 2 Laminin Domain II HrpB7 PF09486.5 gi|352682662|ref|YP_004893186.1| - 0.0008 19.3 32.1 0.11 12.4 2.6 5.0 2 2 3 5 5 5 1 Bacterial type III secretion protein (HrpB7) DUF2968 PF11180.3 gi|352682662|ref|YP_004893186.1| - 0.00084 18.7 7.6 0.00084 18.7 5.3 3.2 2 1 1 3 3 3 1 Protein of unknown function (DUF2968) Seryl_tRNA_N PF02403.17 gi|352682662|ref|YP_004893186.1| - 0.00084 19.3 46.8 0.038 14.0 4.5 4.6 2 2 2 4 4 4 1 Seryl-tRNA synthetase N-terminal domain COG2 PF06148.6 gi|352682662|ref|YP_004893186.1| - 0.00089 19.1 27.6 0.41 10.5 2.4 5.0 2 2 2 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 PspA_IM30 PF04012.7 gi|352682662|ref|YP_004893186.1| - 0.001 18.4 36.2 0.0022 17.3 2.1 4.4 2 2 2 4 4 4 2 PspA/IM30 family Cast PF10174.4 gi|352682662|ref|YP_004893186.1| - 0.0016 16.6 36.3 0.0021 16.2 7.4 2.2 1 1 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone LXG PF04740.7 gi|352682662|ref|YP_004893186.1| - 0.0028 17.5 26.2 0.0074 16.0 5.5 3.1 2 2 1 3 3 3 1 LXG domain of WXG superfamily DUF3584 PF12128.3 gi|352682662|ref|YP_004893186.1| - 0.0029 15.0 36.1 0.033 11.5 12.6 2.0 1 1 0 2 2 2 2 Protein of unknown function (DUF3584) DUF2353 PF09789.4 gi|352682662|ref|YP_004893186.1| - 0.0031 16.8 31.8 0.02 14.1 11.7 2.6 2 1 0 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) NPV_P10 PF05531.7 gi|352682662|ref|YP_004893186.1| - 0.0033 17.6 19.2 0.12 12.6 1.8 5.1 2 2 2 4 4 3 1 Nucleopolyhedrovirus P10 protein COG5 PF10392.4 gi|352682662|ref|YP_004893186.1| - 0.0046 16.9 27.9 0.17 11.8 0.5 4.4 2 2 2 4 4 4 2 Golgi transport complex subunit 5 Prefoldin PF02996.12 gi|352682662|ref|YP_004893186.1| - 0.0051 16.4 36.0 0.039 13.6 4.4 6.5 2 2 2 5 5 4 1 Prefoldin subunit Laminin_I PF06008.9 gi|352682662|ref|YP_004893186.1| - 0.0058 15.9 9.5 0.0058 15.9 6.6 2.9 2 1 0 2 2 2 1 Laminin Domain I CALCOCO1 PF07888.6 gi|352682662|ref|YP_004893186.1| - 0.0075 14.6 32.0 0.12 10.5 11.9 2.2 2 0 0 2 2 2 2 Calcium binding and coiled-coil domain (CALCOCO1) like Filament PF00038.16 gi|352682662|ref|YP_004893186.1| - 0.0097 15.4 40.6 2.1 7.7 27.9 3.4 1 1 0 1 1 1 0 Intermediate filament protein CDC37_N PF03234.9 gi|352682662|ref|YP_004893186.1| - 0.012 15.9 8.6 0.012 15.9 6.0 3.5 1 1 1 3 3 3 0 Cdc37 N terminal kinase binding DUF2408 PF10303.4 gi|352682662|ref|YP_004893186.1| - 0.015 15.4 29.1 1.6 8.8 5.5 4.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) MAD PF05557.8 gi|352682662|ref|YP_004893186.1| - 0.018 13.1 34.1 0.15 10.1 5.5 2.4 2 0 0 2 2 2 0 Mitotic checkpoint protein DUF869 PF05911.6 gi|352682662|ref|YP_004893186.1| - 0.022 13.0 39.0 0.039 12.1 5.2 3.1 1 1 2 3 3 3 0 Plant protein of unknown function (DUF869) SNARE PF05739.14 gi|352682662|ref|YP_004893186.1| - 0.024 14.3 3.3 0.024 14.3 2.3 3.2 4 0 0 4 4 2 0 SNARE domain Mnd1 PF03962.10 gi|352682662|ref|YP_004893186.1| - 0.026 14.2 36.1 0.62 9.7 7.2 4.0 1 1 0 2 2 2 0 Mnd1 family GAS PF13851.1 gi|352682662|ref|YP_004893186.1| - 0.026 13.7 43.1 0.1 11.7 15.0 3.2 2 2 0 2 2 2 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|352682662|ref|YP_004893186.1| - 0.027 12.3 30.2 0.53 8.0 11.1 2.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family MCPsignal PF00015.16 gi|352682662|ref|YP_004893186.1| - 0.029 13.8 18.4 0.23 10.9 2.5 2.8 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Prominin PF05478.6 gi|352682662|ref|YP_004893186.1| - 0.03 11.8 18.7 0.032 11.7 2.0 2.5 2 1 1 3 3 3 0 Prominin ALIX_LYPXL_bnd PF13949.1 gi|352682662|ref|YP_004893186.1| - 0.033 13.1 41.0 0.089 11.7 7.7 2.4 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV DUF3450 PF11932.3 gi|352682662|ref|YP_004893186.1| - 0.036 13.3 29.3 0.13 11.4 2.4 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) Hrs_helical PF12210.3 gi|352682662|ref|YP_004893186.1| - 0.037 14.2 2.2 0.037 14.2 1.5 4.4 2 2 2 4 4 4 0 Hepatocyte growth factor-regulated tyrosine kinase substrate STAT_alpha PF01017.15 gi|352682662|ref|YP_004893186.1| - 0.041 13.5 24.8 0.096 12.3 2.9 2.8 2 1 0 2 2 2 0 STAT protein, all-alpha domain DUF3671 PF12420.3 gi|352682662|ref|YP_004893186.1| - 0.053 13.5 1.3 0.19 11.6 0.2 2.4 2 1 0 2 2 1 0 Protein of unknown function CENP-H PF05837.7 gi|352682662|ref|YP_004893186.1| - 0.053 13.7 37.8 0.094 12.9 5.8 4.5 2 2 2 4 4 4 0 Centromere protein H (CENP-H) TMF_DNA_bd PF12329.3 gi|352682662|ref|YP_004893186.1| - 0.056 13.2 52.9 0.12 12.2 2.6 5.3 2 2 2 5 5 5 0 TATA element modulatory factor 1 DNA binding DUF812 PF05667.6 gi|352682662|ref|YP_004893186.1| - 0.059 11.8 41.0 0.32 9.4 8.4 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF812) APG17 PF04108.7 gi|352682662|ref|YP_004893186.1| - 0.067 11.9 25.8 0.28 9.9 3.1 3.4 2 2 1 3 3 3 0 Autophagy protein Apg17 TACC PF05010.9 gi|352682662|ref|YP_004893186.1| - 0.073 12.8 39.2 0.093 12.4 7.3 2.2 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC) DUF4618 PF15397.1 gi|352682662|ref|YP_004893186.1| - 0.084 12.1 34.3 0.29 10.4 12.1 4.2 2 1 1 3 3 2 0 Domain of unknown function (DUF4618) HsbA PF12296.3 gi|352682662|ref|YP_004893186.1| - 0.088 12.6 10.9 0.31 10.8 0.2 4.2 2 2 1 4 4 3 0 Hydrophobic surface binding protein A Prefoldin_2 PF01920.15 gi|352682662|ref|YP_004893186.1| - 0.1 12.4 42.6 0.92 9.2 7.7 5.8 1 1 5 6 6 5 0 Prefoldin subunit DUF1664 PF07889.7 gi|352682662|ref|YP_004893186.1| - 0.1 12.3 27.0 0.31 10.8 2.9 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Rootletin PF15035.1 gi|352682662|ref|YP_004893186.1| - 0.13 12.2 36.7 1.3 8.9 3.4 3.6 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion Mating_N PF12731.2 gi|352682662|ref|YP_004893186.1| - 0.16 11.8 5.4 2.9 7.8 0.1 3.6 3 1 1 4 4 2 0 Mating-type protein beta 1 WXG100 PF06013.7 gi|352682662|ref|YP_004893186.1| - 0.17 11.8 15.6 8.2 6.5 1.0 5.4 3 2 2 5 5 4 0 Proteins of 100 residues with WXG UPF0242 PF06785.6 gi|352682662|ref|YP_004893186.1| - 0.17 10.5 27.1 0.17 10.5 4.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) Talin_middle PF09141.5 gi|352682662|ref|YP_004893186.1| - 0.18 11.4 8.5 0.17 11.5 0.9 2.7 2 2 0 2 2 2 0 Talin, middle domain DUF3573 PF12097.3 gi|352682662|ref|YP_004893186.1| - 0.24 9.9 18.9 0.12 10.9 4.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3573) Mod_r PF07200.8 gi|352682662|ref|YP_004893186.1| - 0.24 11.3 36.3 0.17 11.7 10.2 4.0 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein FH2 PF02181.18 gi|352682662|ref|YP_004893186.1| - 0.26 10.1 21.0 0.052 12.4 0.8 3.7 1 1 4 5 5 5 0 Formin Homology 2 Domain DUF342 PF03961.8 gi|352682662|ref|YP_004893186.1| - 0.26 9.6 42.3 0.31 9.4 8.3 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF342) DUF724 PF05266.9 gi|352682662|ref|YP_004893186.1| - 0.27 10.8 36.8 0.47 10.0 4.1 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF724) Tweety PF04906.8 gi|352682662|ref|YP_004893186.1| - 0.37 9.1 11.0 0.19 10.1 1.6 2.3 2 0 0 2 2 2 0 Tweety BLOC1_2 PF10046.4 gi|352682662|ref|YP_004893186.1| - 0.44 10.7 32.1 4.3 7.5 2.4 5.8 2 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HlyD PF00529.15 gi|352682662|ref|YP_004893186.1| - 0.51 9.6 28.6 0.42 9.8 5.8 2.8 2 1 1 3 3 3 0 HlyD family secretion protein HSBP1 PF06825.7 gi|352682662|ref|YP_004893186.1| - 0.53 9.9 11.3 0.2 11.2 0.3 3.8 4 1 1 5 5 3 0 Heat shock factor binding protein 1 Spc24 PF08286.6 gi|352682662|ref|YP_004893186.1| - 0.57 9.8 35.4 0.66 9.6 1.7 5.2 2 2 2 4 4 3 0 Spc24 subunit of Ndc80 YqjK PF13997.1 gi|352682662|ref|YP_004893186.1| - 0.58 10.3 5.6 23 5.2 0.1 3.9 4 1 0 4 4 3 0 YqjK-like protein RTBV_P46 PF06216.6 gi|352682662|ref|YP_004893186.1| - 0.6 8.8 22.6 0.026 13.4 1.2 3.6 2 2 2 4 4 4 0 Rice tungro bacilliform virus P46 protein HOOK PF05622.7 gi|352682662|ref|YP_004893186.1| - 0.61 7.8 35.2 0.66 7.7 6.2 2.3 2 0 0 2 2 2 0 HOOK protein Med4 PF10018.4 gi|352682662|ref|YP_004893186.1| - 0.67 9.3 34.9 2.6 7.3 2.1 4.2 2 2 1 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF2421 PF10334.4 gi|352682662|ref|YP_004893186.1| - 0.92 9.0 8.5 7.4 6.1 0.8 3.5 2 2 2 4 4 4 0 Protein of unknown function (DUF2421) FUSC PF04632.7 gi|352682662|ref|YP_004893186.1| - 0.94 7.8 8.8 1.5 7.1 1.2 2.1 1 1 1 2 2 2 0 Fusaric acid resistance protein family Vps52 PF04129.7 gi|352682662|ref|YP_004893186.1| - 0.95 7.9 19.6 0.028 12.9 3.7 2.4 2 1 0 2 2 2 0 Vps52 / Sac2 family Mitofilin PF09731.4 gi|352682662|ref|YP_004893186.1| - 1.1 7.8 38.1 0.02 13.5 3.8 2.3 1 1 1 2 2 2 0 Mitochondrial inner membrane protein Acyl-CoA_dh_2 PF08028.6 gi|352682662|ref|YP_004893186.1| - 1.1 9.4 5.2 2.1 8.6 0.1 3.1 4 1 0 4 4 2 0 Acyl-CoA dehydrogenase, C-terminal domain DUF2433 PF10360.4 gi|352682662|ref|YP_004893186.1| - 1.1 9.5 6.9 13 6.0 0.1 3.2 1 1 3 4 4 2 0 Protein of unknown function (DUF2433) UPF0449 PF15136.1 gi|352682662|ref|YP_004893186.1| - 1.2 9.3 23.7 0.058 13.6 1.4 4.8 4 1 1 5 5 4 0 Uncharacterised protein family UPF0449 DUF2203 PF09969.4 gi|352682662|ref|YP_004893186.1| - 1.3 9.2 26.9 36 4.6 5.5 4.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.6 gi|352682662|ref|YP_004893186.1| - 1.3 9.4 30.7 6.6 7.2 6.2 4.9 1 1 3 4 4 4 0 Syntaxin 6, N-terminal AKNA PF12443.3 gi|352682662|ref|YP_004893186.1| - 1.3 9.0 21.2 2.3 8.2 0.2 4.7 2 2 1 4 4 4 0 AT-hook-containing transcription factor CorA PF01544.13 gi|352682662|ref|YP_004893186.1| - 1.4 7.8 33.5 0.24 10.3 6.7 3.2 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein DivIC PF04977.10 gi|352682662|ref|YP_004893186.1| - 1.4 8.4 48.2 0.32 10.4 1.2 6.5 3 2 4 7 7 6 0 Septum formation initiator Fez1 PF06818.10 gi|352682662|ref|YP_004893186.1| - 1.7 8.6 32.6 2.4 8.1 9.6 2.3 1 1 1 2 2 2 0 Fez1 CENP-Q PF13094.1 gi|352682662|ref|YP_004893186.1| - 1.7 8.6 36.4 3.1 7.7 5.8 3.5 2 1 1 3 3 2 0 CENP-Q, a CENPA-CAD centromere complex subunit T2SG PF08334.6 gi|352682662|ref|YP_004893186.1| - 1.7 8.3 8.5 1.7 8.3 0.1 4.2 1 1 3 5 5 3 0 Type II secretion system (T2SS), protein G DUF641 PF04859.7 gi|352682662|ref|YP_004893186.1| - 1.9 8.2 34.0 2.8 7.6 0.5 4.2 2 2 2 4 4 4 0 Plant protein of unknown function (DUF641) CCDC155 PF14662.1 gi|352682662|ref|YP_004893186.1| - 1.9 8.0 37.9 7.4 6.1 5.3 3.9 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 ELK PF03789.8 gi|352682662|ref|YP_004893186.1| - 2 8.3 8.0 21 5.1 0.0 5.6 5 0 0 5 5 3 0 ELK domain LMBR1 PF04791.11 gi|352682662|ref|YP_004893186.1| - 2 6.8 17.5 2.1 6.8 2.7 2.3 2 0 0 2 2 2 0 LMBR1-like membrane protein DUF3422 PF11902.3 gi|352682662|ref|YP_004893186.1| - 2.1 7.1 15.3 0.55 9.0 0.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3422) Tropomyosin_1 PF12718.2 gi|352682662|ref|YP_004893186.1| - 2.1 8.1 41.9 0.2 11.5 7.1 3.5 1 1 3 4 4 3 0 Tropomyosin like Cortex-I_coil PF09304.5 gi|352682662|ref|YP_004893186.1| - 2.2 8.3 46.1 2.1 8.3 10.0 4.3 2 2 1 3 3 3 0 Cortexillin I, coiled coil UPF0118 PF01594.11 gi|352682662|ref|YP_004893186.1| - 2.3 7.1 3.2 17 4.2 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF20 DUF904 PF06005.7 gi|352682662|ref|YP_004893186.1| - 2.3 8.5 43.9 0.3 11.4 6.5 5.0 2 2 1 3 3 2 0 Protein of unknown function (DUF904) CheZ PF04344.8 gi|352682662|ref|YP_004893186.1| - 3 7.4 15.5 7.7 6.1 3.3 2.9 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ HCMV_UL139 PF12507.3 gi|352682662|ref|YP_004893186.1| - 3 8.0 21.2 11 6.2 1.5 4.5 1 1 4 5 5 5 0 Human Cytomegalovirus UL139 protein NTR2 PF15458.1 gi|352682662|ref|YP_004893186.1| - 3.1 6.9 38.2 0.28 10.3 1.4 4.3 2 2 2 4 4 4 0 Nineteen complex-related protein 2 Tup_N PF08581.5 gi|352682662|ref|YP_004893186.1| - 3.5 7.8 22.5 1.1 9.4 1.3 4.3 2 2 1 4 4 3 0 Tup N-terminal Prefoldin_3 PF13758.1 gi|352682662|ref|YP_004893186.1| - 4 7.2 25.6 3.4 7.4 0.3 5.5 1 1 3 5 5 5 0 Prefoldin subunit Sigma70_r4_2 PF08281.7 gi|352682662|ref|YP_004893186.1| - 4.3 6.8 10.3 3.9 7.0 0.1 4.3 3 1 2 5 5 4 0 Sigma-70, region 4 THOC7 PF05615.8 gi|352682662|ref|YP_004893186.1| - 5.2 7.3 45.5 0.087 13.0 5.1 4.5 2 2 2 4 4 3 0 Tho complex subunit 7 Syntaxin PF00804.20 gi|352682662|ref|YP_004893186.1| - 5.3 7.2 43.5 0.56 10.3 3.0 4.7 2 2 1 3 3 2 0 Syntaxin DivIVA PF05103.8 gi|352682662|ref|YP_004893186.1| - 5.4 7.0 42.5 7.1 6.7 8.5 5.2 2 2 1 3 3 2 0 DivIVA protein DASH_Duo1 PF08651.5 gi|352682662|ref|YP_004893186.1| - 6.2 6.4 17.2 10 5.7 0.5 4.2 2 2 0 3 3 3 0 DASH complex subunit Duo1 Tht1 PF04163.7 gi|352682662|ref|YP_004893186.1| - 6.2 5.0 19.7 0.16 10.3 3.0 2.7 1 1 1 2 2 2 0 Tht1-like nuclear fusion protein USP8_interact PF08941.5 gi|352682662|ref|YP_004893186.1| - 6.3 6.0 20.0 2.5 7.3 1.1 3.7 2 2 2 4 4 4 0 USP8 interacting CENP-O PF09496.5 gi|352682662|ref|YP_004893186.1| - 7.2 6.9 7.5 60 3.9 0.0 4.1 3 2 1 4 4 3 0 Cenp-O kinetochore centromere component Vfa1 PF08432.5 gi|352682662|ref|YP_004893186.1| - 9 6.2 21.9 2 8.4 6.9 2.4 2 1 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.14 gi|352682662|ref|YP_004893186.1| - 9.1 5.7 38.8 25 4.3 2.5 4.3 2 2 1 3 3 3 0 GrpE Vps51 PF08700.6 gi|352682662|ref|YP_004893186.1| - 9.5 6.1 35.4 23 4.9 0.3 6.7 2 2 3 5 5 5 0 Vps51/Vps67 Fib_alpha PF08702.5 gi|352682662|ref|YP_004893186.1| - 9.5 6.3 32.5 14 5.8 8.5 3.4 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family DUF3323 PF11796.3 gi|352682662|ref|YP_004893186.1| - 10 5.3 13.9 2.3 7.4 3.4 2.3 2 0 0 2 2 2 0 Protein of unknown function N-terminus (DUF3323) HTH_31 PF13560.1 gi|352682663|ref|YP_004893187.1| - 5.6e-10 39.2 0.2 1.4e-09 38.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|352682663|ref|YP_004893187.1| - 3.7e-08 33.2 0.0 8.9e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|352682663|ref|YP_004893187.1| - 3.3e-07 30.0 0.0 6.5e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Ribosomal_L13e PF01294.13 gi|352682664|ref|YP_004893188.1| - 4.3e-07 29.5 0.8 4.3e-07 29.5 0.6 1.7 1 1 1 2 2 2 1 Ribosomal protein L13e Ribosomal_L15e PF00827.12 gi|352682664|ref|YP_004893188.1| - 0.00051 19.6 3.4 0.00051 19.6 2.4 1.9 2 1 0 2 2 2 1 Ribosomal L15 DUF3377 PF11857.3 gi|352682665|ref|YP_004893189.1| - 0.38 10.4 3.8 0.63 9.7 2.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) Tic20 PF09685.5 gi|352682665|ref|YP_004893189.1| - 7 6.6 11.3 18 5.3 7.8 1.7 1 1 0 1 1 1 0 Tic20-like protein HIT PF01230.18 gi|352682667|ref|YP_004893191.1| - 0.15 12.5 0.0 0.2 12.2 0.0 1.2 1 0 0 1 1 1 0 HIT domain TFIIB PF00382.14 gi|352682668|ref|YP_004893192.1| - 1.5e-32 111.1 2.1 4.8e-16 58.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|352682668|ref|YP_004893192.1| - 1.7e-17 62.4 2.1 2.6e-17 61.8 1.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|352682668|ref|YP_004893192.1| - 4.2e-10 39.2 0.1 3.3e-05 23.4 0.1 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Cyclin_C PF02984.14 gi|352682668|ref|YP_004893192.1| - 1.2e-06 28.4 0.0 0.00048 20.0 0.0 2.5 2 0 0 2 2 2 1 Cyclin, C-terminal domain Ribosomal_S27e PF01667.12 gi|352682668|ref|YP_004893192.1| - 0.023 14.2 1.4 0.043 13.3 1.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 RRN7 PF11781.3 gi|352682668|ref|YP_004893192.1| - 0.038 13.4 2.2 0.082 12.4 1.5 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prim_Zn_Ribbon PF08273.7 gi|352682668|ref|YP_004893192.1| - 0.049 13.7 0.6 0.099 12.7 0.4 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Rubredoxin PF00301.15 gi|352682668|ref|YP_004893192.1| - 0.064 13.1 0.3 5.3 6.9 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin Lar_restr_allev PF14354.1 gi|352682668|ref|YP_004893192.1| - 0.083 13.2 0.3 0.18 12.1 0.2 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.5 gi|352682668|ref|YP_004893192.1| - 0.084 12.3 2.0 0.15 11.5 1.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF2318 PF10080.4 gi|352682668|ref|YP_004893192.1| - 0.1 12.3 0.2 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) FYDLN_acid PF09538.5 gi|352682668|ref|YP_004893192.1| - 0.11 13.1 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HTH_11 PF08279.7 gi|352682668|ref|YP_004893192.1| - 0.12 12.0 0.5 1.4 8.5 0.0 2.8 4 0 0 4 4 4 0 HTH domain Desulfoferrod_N PF06397.7 gi|352682668|ref|YP_004893192.1| - 0.31 10.4 5.7 0.71 9.3 4.0 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.1 gi|352682668|ref|YP_004893192.1| - 0.32 11.0 2.2 0.47 10.5 0.3 2.2 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AAA PF00004.24 gi|352682669|ref|YP_004893193.1| - 2.4e-14 53.6 0.0 4.7e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|352682669|ref|YP_004893193.1| - 7.7e-14 51.6 0.0 1.5e-11 44.2 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|352682669|ref|YP_004893193.1| - 1e-10 41.4 0.0 3e-10 39.9 0.0 1.8 2 0 0 2 2 1 1 Replication factor C C-terminal domain Rad17 PF03215.10 gi|352682669|ref|YP_004893193.1| - 3e-10 39.4 0.0 3.4e-05 22.7 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|352682669|ref|YP_004893193.1| - 7.4e-09 35.8 0.1 0.0017 18.4 0.0 3.1 2 2 1 3 3 3 2 AAA domain RuvB_N PF05496.7 gi|352682669|ref|YP_004893193.1| - 1.5e-08 34.0 0.0 3.5e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|352682669|ref|YP_004893193.1| - 9e-08 32.3 0.4 0.0011 19.0 0.0 2.9 2 2 1 3 3 3 2 AAA ATPase domain AAA_14 PF13173.1 gi|352682669|ref|YP_004893193.1| - 4.2e-06 26.6 0.0 6.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352682669|ref|YP_004893193.1| - 5.5e-06 26.0 0.0 1.8e-05 24.3 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_3 PF07726.6 gi|352682669|ref|YP_004893193.1| - 5.3e-05 22.8 0.0 9.5e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|352682669|ref|YP_004893193.1| - 0.0001 22.2 0.0 0.00026 20.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|352682669|ref|YP_004893193.1| - 0.00012 21.8 0.1 0.00043 20.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|352682669|ref|YP_004893193.1| - 0.00014 21.3 0.1 0.00057 19.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|352682669|ref|YP_004893193.1| - 0.00021 20.9 0.0 0.00053 19.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|352682669|ref|YP_004893193.1| - 0.00034 20.9 0.0 0.0021 18.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|352682669|ref|YP_004893193.1| - 0.00039 19.6 0.0 0.0051 16.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|352682669|ref|YP_004893193.1| - 0.00042 21.1 0.0 0.00086 20.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|352682669|ref|YP_004893193.1| - 0.00049 19.6 0.0 0.00078 19.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DEAD PF00270.24 gi|352682669|ref|YP_004893193.1| - 0.00092 18.7 0.1 0.042 13.3 0.0 2.5 2 1 1 3 3 2 1 DEAD/DEAH box helicase AAA_11 PF13086.1 gi|352682669|ref|YP_004893193.1| - 0.0013 18.3 0.0 0.0035 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|352682669|ref|YP_004893193.1| - 0.0013 17.5 0.0 0.033 12.9 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA_10 PF12846.2 gi|352682669|ref|YP_004893193.1| - 0.0017 17.8 0.0 0.93 8.8 0.0 2.5 2 0 0 2 2 2 1 AAA-like domain PhoH PF02562.11 gi|352682669|ref|YP_004893193.1| - 0.0023 17.1 0.4 0.57 9.3 0.0 2.3 1 1 1 2 2 2 1 PhoH-like protein AAA_30 PF13604.1 gi|352682669|ref|YP_004893193.1| - 0.0052 16.3 0.3 0.07 12.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|352682669|ref|YP_004893193.1| - 0.0057 16.0 0.1 0.019 14.4 0.0 1.9 2 1 0 2 2 2 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|352682669|ref|YP_004893193.1| - 0.011 15.8 0.0 0.03 14.4 0.0 1.7 2 0 0 2 2 1 0 RNA helicase T2SE PF00437.15 gi|352682669|ref|YP_004893193.1| - 0.016 14.0 0.0 0.13 11.1 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|352682669|ref|YP_004893193.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|352682669|ref|YP_004893193.1| - 0.02 13.7 0.2 0.67 8.6 0.0 2.4 1 1 1 2 2 2 0 ArgK protein Sigma54_activ_2 PF14532.1 gi|352682669|ref|YP_004893193.1| - 0.029 14.4 0.0 0.08 12.9 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|352682669|ref|YP_004893193.1| - 0.033 13.9 0.0 0.96 9.0 0.0 2.2 1 1 1 2 2 2 0 Archaeal ATPase DUF2075 PF09848.4 gi|352682669|ref|YP_004893193.1| - 0.034 13.1 0.0 0.26 10.2 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|352682669|ref|YP_004893193.1| - 0.039 13.7 0.0 0.19 11.5 0.0 2.0 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.13 gi|352682669|ref|YP_004893193.1| - 0.044 13.2 0.0 0.098 12.1 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family KTI12 PF08433.5 gi|352682669|ref|YP_004893193.1| - 0.058 12.5 0.0 0.092 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DNA_pol3_gamma3 PF12169.3 gi|352682669|ref|YP_004893193.1| - 0.072 12.8 0.0 0.74 9.5 0.0 2.3 2 0 0 2 2 2 0 DNA polymerase III subunits gamma and tau domain III Viral_helicase1 PF01443.13 gi|352682669|ref|YP_004893193.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.9 gi|352682669|ref|YP_004893193.1| - 0.12 12.2 0.0 0.31 10.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) GTP_cyclohydro2 PF00925.15 gi|352682670|ref|YP_004893194.1| - 0.16 11.1 1.0 0.2 10.8 0.7 1.2 1 1 0 1 1 1 0 GTP cyclohydrolase II TGS PF02824.16 gi|352682671|ref|YP_004893195.1| - 1e-16 60.4 0.0 7.4e-16 57.7 0.0 2.2 2 0 0 2 2 2 1 TGS domain MMR_HSR1 PF01926.18 gi|352682671|ref|YP_004893195.1| - 3.3e-08 33.4 0.0 5.8e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase CBS PF00571.23 gi|352682671|ref|YP_004893195.1| - 2.6e-05 23.9 0.0 0.12 12.1 0.0 2.8 3 0 0 3 3 3 2 CBS domain YchF-GTPase_C PF06071.8 gi|352682671|ref|YP_004893195.1| - 0.0063 16.2 0.8 7.1 6.4 0.1 3.3 2 1 0 2 2 2 2 Protein of unknown function (DUF933) FeoB_N PF02421.13 gi|352682671|ref|YP_004893195.1| - 0.013 14.7 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B NAAA-beta PF15508.1 gi|352682671|ref|YP_004893195.1| - 0.082 13.2 0.2 0.21 11.9 0.1 1.6 1 0 0 1 1 1 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase ECH PF00378.15 gi|352682672|ref|YP_004893196.1| - 2.8e-19 69.2 0.0 3.4e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Iso_dh PF00180.15 gi|352682673|ref|YP_004893197.1| - 2.9e-95 319.1 0.0 3.6e-95 318.8 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TAF PF02969.12 gi|352682673|ref|YP_004893197.1| - 0.14 12.1 0.2 4 7.4 0.0 2.4 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) Acetyltransf_1 PF00583.19 gi|352682674|ref|YP_004893198.1| - 1.1e-13 51.0 0.0 1.8e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|352682674|ref|YP_004893198.1| - 6.3e-12 45.4 0.0 8.8e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|352682674|ref|YP_004893198.1| - 7.8e-12 45.3 0.0 9e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|352682674|ref|YP_004893198.1| - 5.1e-10 39.5 0.0 6.1e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|352682674|ref|YP_004893198.1| - 9.8e-09 35.2 0.0 1.4e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|352682674|ref|YP_004893198.1| - 1.3e-08 34.4 0.0 2.2e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|352682674|ref|YP_004893198.1| - 1e-05 25.4 0.0 2.8e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|352682674|ref|YP_004893198.1| - 0.00056 20.0 0.0 0.00064 19.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|352682674|ref|YP_004893198.1| - 0.02 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MOZ_SAS PF01853.13 gi|352682674|ref|YP_004893198.1| - 0.052 12.7 0.0 0.081 12.1 0.0 1.3 1 0 0 1 1 1 0 MOZ/SAS family Acetyltransf_6 PF13480.1 gi|352682674|ref|YP_004893198.1| - 0.071 13.0 0.0 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|352682674|ref|YP_004893198.1| - 0.071 12.6 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NMD3 PF04981.8 gi|352682675|ref|YP_004893199.1| - 1e-36 126.2 0.0 1.3e-36 125.9 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DNA_RNApol_7kD PF03604.8 gi|352682675|ref|YP_004893199.1| - 0.36 10.3 5.7 3.6 7.1 4.0 2.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|352682675|ref|YP_004893199.1| - 0.41 10.9 2.8 2.6 8.3 1.6 2.4 2 1 0 2 2 2 0 Restriction alleviation protein Lar Zn_ribbon_recom PF13408.1 gi|352682675|ref|YP_004893199.1| - 0.49 10.6 0.2 0.49 10.6 0.1 3.2 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain DZR PF12773.2 gi|352682675|ref|YP_004893199.1| - 0.62 9.9 3.3 3.1 7.6 1.1 2.5 2 1 0 2 2 2 0 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|352682675|ref|YP_004893199.1| - 1.6 8.4 4.2 2.7 7.7 0.1 2.6 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.5 gi|352682675|ref|YP_004893199.1| - 5.5 7.0 7.4 8.7 6.3 0.1 3.4 3 1 0 3 3 3 0 Zinc ribbon domain DNA_methylase PF00145.12 gi|352682676|ref|YP_004893200.1| - 2.2e-48 165.0 0.0 6.6e-32 110.9 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|352682676|ref|YP_004893200.1| - 0.00024 21.1 0.0 0.00038 20.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Lipase_GDSL_3 PF14606.1 gi|352682676|ref|YP_004893200.1| - 0.064 12.9 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family PDDEXK_1 PF12705.2 gi|352682677|ref|YP_004893201.1| - 0.0012 18.2 0.3 0.0014 18.1 0.2 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily MAP PF03642.8 gi|352682677|ref|YP_004893201.1| - 0.011 15.9 0.1 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 MAP domain DUF1064 PF06356.6 gi|352682677|ref|YP_004893201.1| - 0.042 13.8 0.4 0.082 12.9 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1064) Pyr_redox_2 PF07992.9 gi|352682678|ref|YP_004893202.1| - 2.4e-26 92.8 0.4 3.4e-26 92.3 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352682678|ref|YP_004893202.1| - 4.1e-11 42.4 1.3 4.7e-06 25.7 1.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|352682678|ref|YP_004893202.1| - 2.8e-09 36.3 1.8 2.4e-06 26.6 0.1 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|352682678|ref|YP_004893202.1| - 2.3e-08 34.3 0.1 9.4e-06 25.8 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|352682678|ref|YP_004893202.1| - 7.8e-07 28.2 8.2 2.4e-06 26.6 1.3 3.0 3 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|352682678|ref|YP_004893202.1| - 2.5e-06 26.8 0.1 2.5e-06 26.8 0.1 2.0 3 0 0 3 3 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|352682678|ref|YP_004893202.1| - 6.5e-05 21.5 0.7 0.0034 15.9 0.6 2.5 2 1 1 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|352682678|ref|YP_004893202.1| - 7.4e-05 21.9 2.0 0.00019 20.6 0.2 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|352682678|ref|YP_004893202.1| - 0.00019 21.3 0.1 0.00044 20.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|352682678|ref|YP_004893202.1| - 0.0019 17.9 0.5 0.039 13.7 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|352682678|ref|YP_004893202.1| - 0.0027 18.0 1.2 1.3 9.5 0.9 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|352682678|ref|YP_004893202.1| - 0.025 13.5 0.4 0.098 11.5 0.3 1.9 1 1 1 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|352682678|ref|YP_004893202.1| - 0.07 11.7 1.2 0.14 10.7 0.3 1.8 2 0 0 2 2 2 0 Tryptophan halogenase MmgE_PrpD PF03972.9 gi|352682679|ref|YP_004893203.1| - 2.2e-124 415.0 0.2 2.8e-124 414.6 0.1 1.0 1 0 0 1 1 1 1 MmgE/PrpD family PEP_mutase PF13714.1 gi|352682680|ref|YP_004893204.1| - 4.6e-68 228.9 0.8 5.9e-68 228.6 0.5 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|352682680|ref|YP_004893204.1| - 9.2e-16 57.1 0.1 1.4e-15 56.5 0.1 1.4 1 0 0 1 1 1 1 Isocitrate lyase family Pantoate_transf PF02548.10 gi|352682680|ref|YP_004893204.1| - 0.023 13.8 0.6 0.24 10.4 0.1 2.1 1 1 1 2 2 2 0 Ketopantoate hydroxymethyltransferase TFIIE_alpha PF02002.12 gi|352682682|ref|YP_004893206.1| - 0.067 12.7 0.1 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Ribosomal_L22 PF00237.14 gi|352682683|ref|YP_004893207.1| - 5e-28 97.1 0.0 6.1e-28 96.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e UbiA PF01040.13 gi|352682684|ref|YP_004893208.1| - 4.9e-28 98.0 28.2 7.4e-28 97.4 19.4 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Potass_KdpF PF09604.5 gi|352682684|ref|YP_004893208.1| - 0.038 13.8 1.5 0.038 13.8 1.0 4.3 3 0 0 3 3 3 0 F subunit of K+-transporting ATPase (Potass_KdpF) DUF2107 PF09880.4 gi|352682684|ref|YP_004893208.1| - 0.92 9.4 8.0 0.24 11.3 1.1 2.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) DUF3481 PF11980.3 gi|352682684|ref|YP_004893208.1| - 5.3 6.9 6.0 1 9.2 1.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3481) HAD_2 PF13419.1 gi|352682685|ref|YP_004893209.1| - 3.8e-13 50.0 0.0 1.2e-12 48.4 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|352682685|ref|YP_004893209.1| - 7.2e-05 23.0 0.0 8.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|352682685|ref|YP_004893209.1| - 0.0042 16.7 0.0 0.0086 15.7 0.0 1.6 1 1 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|352682685|ref|YP_004893209.1| - 0.09 13.1 0.0 0.42 10.9 0.0 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HTH_24 PF13412.1 gi|352682686|ref|YP_004893210.1| - 5.5e-11 41.6 0.0 9.6e-11 40.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|352682686|ref|YP_004893210.1| - 1.4e-09 37.4 0.6 2.9e-09 36.3 0.4 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|352682686|ref|YP_004893210.1| - 6.4e-09 35.3 0.3 1.4e-08 34.2 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|352682686|ref|YP_004893210.1| - 6.5e-08 32.2 0.3 1.4e-07 31.2 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|352682686|ref|YP_004893210.1| - 2.9e-07 29.9 0.0 5.1e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|352682686|ref|YP_004893210.1| - 2.4e-06 27.3 0.0 5.5e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|352682686|ref|YP_004893210.1| - 9.3e-05 22.0 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|352682686|ref|YP_004893210.1| - 0.00035 20.1 0.1 0.001 18.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|352682686|ref|YP_004893210.1| - 0.00088 18.8 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain FeoC PF09012.5 gi|352682686|ref|YP_004893210.1| - 0.002 17.8 0.1 0.0032 17.1 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.11 gi|352682686|ref|YP_004893210.1| - 0.0036 16.8 0.0 0.0068 15.9 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.1 gi|352682686|ref|YP_004893210.1| - 0.0047 17.2 0.2 0.0082 16.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|352682686|ref|YP_004893210.1| - 0.0071 16.4 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|352682686|ref|YP_004893210.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|352682686|ref|YP_004893210.1| - 0.076 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family SKG6 PF08693.5 gi|352682686|ref|YP_004893210.1| - 0.1 11.9 1.6 0.22 10.8 1.1 1.5 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DUF4229 PF14012.1 gi|352682686|ref|YP_004893210.1| - 0.32 10.9 3.4 0.18 11.7 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Cob_adeno_trans PF01923.13 gi|352682687|ref|YP_004893211.1| - 1.1e-18 67.5 0.0 1.3e-18 67.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase TPR_7 PF13176.1 gi|352682687|ref|YP_004893211.1| - 0.077 12.8 0.0 0.29 11.0 0.0 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|352682687|ref|YP_004893211.1| - 0.14 12.0 5.8 2.8 7.9 0.1 3.2 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|352682687|ref|YP_004893211.1| - 3.6 8.4 10.8 3.8 8.4 0.0 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat Ribosomal_L38e PF01781.13 gi|352682688|ref|YP_004893212.1| - 0.00025 20.7 0.2 0.00051 19.7 0.1 1.6 1 1 0 1 1 1 1 Ribosomal L38e protein family Ribosomal_60s PF00428.14 gi|352682689|ref|YP_004893213.1| - 6e-15 55.4 14.8 8.7e-15 54.9 10.3 1.3 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF2208 PF09973.4 gi|352682690|ref|YP_004893214.1| - 5.1e-43 146.9 6.3 6e-43 146.7 4.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) E1-E2_ATPase PF00122.15 gi|352682690|ref|YP_004893214.1| - 0.33 9.9 2.6 0.45 9.5 0.5 2.1 1 1 0 1 1 1 0 E1-E2 ATPase Peptidase_M50 PF02163.17 gi|352682692|ref|YP_004893216.1| - 9.4e-25 86.6 0.0 5.5e-24 84.1 0.0 2.2 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|352682692|ref|YP_004893216.1| - 7.9e-07 28.8 0.0 0.0016 18.3 0.0 2.9 1 1 1 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.1 gi|352682692|ref|YP_004893216.1| - 0.039 13.7 0.2 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Tricorn protease PDZ domain PDZ PF00595.19 gi|352682692|ref|YP_004893216.1| - 0.083 13.0 0.2 26 5.0 0.0 3.4 3 0 0 3 3 3 0 PDZ domain (Also known as DHR or GLGF) DUF202 PF02656.10 gi|352682693|ref|YP_004893217.1| - 8 6.7 11.2 1.5 9.1 0.2 2.8 1 1 0 2 2 2 0 Domain of unknown function (DUF202) TIP49 PF06068.8 gi|352682694|ref|YP_004893218.1| - 4.1e-152 506.5 0.2 4.7e-152 506.3 0.1 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|352682694|ref|YP_004893218.1| - 2e-10 40.9 1.4 7.5e-08 32.6 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|352682694|ref|YP_004893218.1| - 3.4e-08 32.8 2.7 3.9e-06 26.0 0.0 3.3 3 1 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|352682694|ref|YP_004893218.1| - 7.7e-08 32.5 0.1 2.6e-05 24.2 0.0 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|352682694|ref|YP_004893218.1| - 1.6e-05 25.0 0.3 0.029 14.5 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|352682694|ref|YP_004893218.1| - 2.5e-05 23.9 0.1 5.8e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|352682694|ref|YP_004893218.1| - 4.1e-05 22.5 0.0 0.00016 20.6 0.0 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_17 PF13207.1 gi|352682694|ref|YP_004893218.1| - 9.9e-05 23.1 1.0 0.00024 21.9 0.2 2.3 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|352682694|ref|YP_004893218.1| - 0.00016 21.1 0.0 0.00031 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|352682694|ref|YP_004893218.1| - 0.00036 20.0 0.0 0.00081 18.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|352682694|ref|YP_004893218.1| - 0.0011 19.3 0.1 0.0033 17.7 0.0 2.1 2 1 0 2 2 1 1 AAA domain Sigma54_activat PF00158.21 gi|352682694|ref|YP_004893218.1| - 0.0023 17.4 0.2 0.031 13.7 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|352682694|ref|YP_004893218.1| - 0.0025 17.5 0.1 0.0077 15.9 0.0 2.0 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|352682694|ref|YP_004893218.1| - 0.0028 17.5 0.0 0.0081 16.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|352682694|ref|YP_004893218.1| - 0.0044 16.2 0.2 0.011 14.9 0.0 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|352682694|ref|YP_004893218.1| - 0.0045 16.0 0.2 0.0089 15.1 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.1 gi|352682694|ref|YP_004893218.1| - 0.0051 16.7 0.0 0.03 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|352682694|ref|YP_004893218.1| - 0.0067 15.4 0.2 0.11 11.4 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|352682694|ref|YP_004893218.1| - 0.0071 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.1 gi|352682694|ref|YP_004893218.1| - 0.02 14.4 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|352682694|ref|YP_004893218.1| - 0.021 14.0 0.2 0.042 13.0 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.17 gi|352682694|ref|YP_004893218.1| - 0.027 14.6 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|352682694|ref|YP_004893218.1| - 0.082 13.2 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.10 gi|352682694|ref|YP_004893218.1| - 0.092 12.5 0.1 0.28 10.9 0.0 1.9 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|352682694|ref|YP_004893218.1| - 0.1 12.1 0.2 1.6 8.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|352682694|ref|YP_004893218.1| - 0.1 12.1 0.2 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain SecA_PP_bind PF01043.15 gi|352682694|ref|YP_004893218.1| - 0.13 12.6 0.3 0.45 10.8 0.2 1.9 1 0 0 1 1 1 0 SecA preprotein cross-linking domain Antitoxin-MazE PF04014.13 gi|352682694|ref|YP_004893218.1| - 0.34 10.6 2.7 2.6 7.8 0.8 2.9 2 0 0 2 2 2 0 Antidote-toxin recognition MazE DUF4443 PF14544.1 gi|352682695|ref|YP_004893219.1| - 0.014 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) Citrate_synt PF00285.16 gi|352682696|ref|YP_004893220.1| - 3.9e-130 433.7 0.0 4.4e-130 433.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Replicase PF03090.12 gi|352682696|ref|YP_004893220.1| - 0.087 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Replicase family Malic_M PF03949.10 gi|352682697|ref|YP_004893221.1| - 2.4e-68 230.4 0.2 3e-68 230.1 0.1 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|352682697|ref|YP_004893221.1| - 3.4e-25 88.6 0.3 1.3e-15 57.4 0.1 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Shikimate_DH PF01488.15 gi|352682697|ref|YP_004893221.1| - 0.011 15.7 0.1 6.1 6.9 0.0 2.9 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|352682697|ref|YP_004893221.1| - 0.04 12.9 0.0 0.63 9.1 0.0 2.4 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ThiF PF00899.16 gi|352682697|ref|YP_004893221.1| - 0.047 13.5 0.9 0.44 10.3 0.1 2.4 2 0 0 2 2 2 0 ThiF family Fe-ADH_2 PF13685.1 gi|352682699|ref|YP_004893223.1| - 7.9e-58 195.6 0.0 1.1e-57 195.1 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|352682699|ref|YP_004893223.1| - 5.7e-28 97.5 2.6 8.5e-27 93.7 1.8 2.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|352682699|ref|YP_004893223.1| - 1.6e-06 27.2 4.4 0.00018 20.5 3.1 2.9 1 1 0 1 1 1 1 3-dehydroquinate synthase SpoIIAA-like PF11964.3 gi|352682699|ref|YP_004893223.1| - 0.071 13.4 0.0 0.66 10.2 0.0 2.4 3 0 0 3 3 3 0 SpoIIAA-like DJ-1_PfpI PF01965.19 gi|352682700|ref|YP_004893224.1| - 4.4e-06 26.2 0.0 6.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|352682700|ref|YP_004893224.1| - 0.016 14.4 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase FAD_binding_5 PF00941.16 gi|352682700|ref|YP_004893224.1| - 0.093 12.1 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain in molybdopterin dehydrogenase AAA_18 PF13238.1 gi|352682701|ref|YP_004893225.1| - 1.4e-08 35.0 0.1 1.9e-08 34.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352682701|ref|YP_004893225.1| - 3.2e-05 24.7 0.1 5.2e-05 24.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|352682701|ref|YP_004893225.1| - 0.0012 18.2 0.4 0.083 12.2 0.0 2.4 2 1 0 2 2 2 1 Thymidylate kinase Imm5 PF14423.1 gi|352682701|ref|YP_004893225.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Immunity protein Imm5 AAA_33 PF13671.1 gi|352682701|ref|YP_004893225.1| - 0.017 14.9 0.0 0.033 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|352682701|ref|YP_004893225.1| - 0.023 14.6 0.0 0.041 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain OMPdecase PF00215.19 gi|352682702|ref|YP_004893226.1| - 1.6e-18 66.9 0.7 2.1e-18 66.5 0.5 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF556 PF04476.8 gi|352682702|ref|YP_004893226.1| - 6.1e-05 22.3 2.0 0.034 13.3 0.2 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF556) Ribul_P_3_epim PF00834.14 gi|352682702|ref|YP_004893226.1| - 0.0005 19.2 0.4 0.0012 17.9 0.2 1.7 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family Nitro_FeMo-Co PF02579.12 gi|352682702|ref|YP_004893226.1| - 0.0067 16.4 0.1 0.018 15.0 0.1 1.7 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor EAL PF00563.15 gi|352682702|ref|YP_004893226.1| - 0.0076 15.7 0.1 0.59 9.5 0.0 2.3 1 1 1 2 2 2 1 EAL domain Radical_SAM PF04055.16 gi|352682702|ref|YP_004893226.1| - 0.0098 16.0 0.5 0.024 14.8 0.3 1.6 1 1 0 1 1 1 1 Radical SAM superfamily HMGL-like PF00682.14 gi|352682702|ref|YP_004893226.1| - 0.011 15.3 0.1 0.023 14.3 0.0 1.6 1 1 0 1 1 1 0 HMGL-like QRPTase_C PF01729.14 gi|352682702|ref|YP_004893226.1| - 0.028 13.9 0.7 0.11 11.9 0.5 2.0 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Smac_DIABLO PF09057.5 gi|352682702|ref|YP_004893226.1| - 0.036 13.1 0.1 0.056 12.5 0.1 1.3 1 0 0 1 1 1 0 Second Mitochondria-derived Activator of Caspases CutC PF03932.9 gi|352682702|ref|YP_004893226.1| - 0.039 13.2 1.3 0.19 10.9 0.2 2.0 2 0 0 2 2 2 0 CutC family CPT PF07931.7 gi|352682702|ref|YP_004893226.1| - 0.073 12.6 0.7 0.11 12.1 0.5 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NIF3 PF01784.13 gi|352682702|ref|YP_004893226.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.4 1 1 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Archease PF01951.11 gi|352682703|ref|YP_004893227.1| - 3.2e-37 127.5 0.0 3.6e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Catalase-rel PF06628.7 gi|352682704|ref|YP_004893228.1| - 0.045 13.6 0.0 8.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Catalase-related immune-responsive HHH_6 PF14579.1 gi|352682704|ref|YP_004893228.1| - 0.11 12.5 0.1 0.27 11.2 0.0 1.6 1 1 1 2 2 2 0 Helix-hairpin-helix motif RNHCP PF12647.2 gi|352682705|ref|YP_004893229.1| - 0.002 17.9 0.0 0.0025 17.6 0.0 1.1 1 0 0 1 1 1 1 RNHCP domain Sgf11 PF08209.6 gi|352682705|ref|YP_004893229.1| - 0.011 15.0 0.5 0.88 8.9 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-FPG_IleRS PF06827.9 gi|352682705|ref|YP_004893229.1| - 0.11 12.1 0.1 0.11 12.1 0.0 2.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS RNA_POL_M_15KD PF02150.11 gi|352682705|ref|YP_004893229.1| - 0.14 11.9 0.2 0.19 11.4 0.1 1.2 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-C2H2_4 PF13894.1 gi|352682705|ref|YP_004893229.1| - 0.2 12.0 2.1 2.8 8.4 1.5 2.2 1 1 0 1 1 1 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|352682705|ref|YP_004893229.1| - 0.57 10.0 3.6 3.6 7.4 2.5 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Mu-like_Com PF10122.4 gi|352682705|ref|YP_004893229.1| - 1.9 7.6 4.6 0.63 9.1 0.3 1.7 1 1 1 2 2 2 0 Mu-like prophage protein Com Methyltrans_RNA PF04452.9 gi|352682706|ref|YP_004893230.1| - 0.067 12.3 0.0 0.077 12.1 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase B5 PF03484.10 gi|352682707|ref|YP_004893231.1| - 1.9e-10 40.4 0.2 1.8e-08 34.0 0.1 2.7 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|352682707|ref|YP_004893231.1| - 1.4e-09 37.6 0.0 2.9e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain DUF1488 PF07369.6 gi|352682707|ref|YP_004893231.1| - 0.14 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1488) CYTH PF01928.16 gi|352682708|ref|YP_004893232.1| - 0.065 12.9 0.1 0.072 12.7 0.1 1.2 1 0 0 1 1 1 0 CYTH domain Ribosomal_S19 PF00203.16 gi|352682709|ref|YP_004893233.1| - 2e-27 94.6 0.1 2.8e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_S17 PF00366.15 gi|352682710|ref|YP_004893234.1| - 2.7e-17 62.5 5.2 7.9e-17 61.0 3.9 1.5 2 0 0 2 2 2 1 Ribosomal protein S17 RsgI_N PF12791.2 gi|352682710|ref|YP_004893234.1| - 0.087 12.5 0.0 0.25 11.0 0.0 1.8 1 0 0 1 1 1 0 Anti-sigma factor N-terminus ERCC4 PF02732.10 gi|352682711|ref|YP_004893235.1| - 1.5e-17 63.6 0.0 2.2e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.18 gi|352682711|ref|YP_004893235.1| - 0.00073 19.1 0.0 0.0024 17.4 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|352682711|ref|YP_004893235.1| - 0.0055 16.8 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|352682711|ref|YP_004893235.1| - 0.015 15.1 0.0 0.083 12.7 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|352682711|ref|YP_004893235.1| - 0.016 15.2 0.0 0.05 13.6 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif 5_3_exonuc PF01367.15 gi|352682711|ref|YP_004893235.1| - 0.043 14.0 0.0 0.089 13.0 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|352682711|ref|YP_004893235.1| - 0.051 13.5 0.0 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif NmrA PF05368.8 gi|352682711|ref|YP_004893235.1| - 0.1 11.8 0.0 0.22 10.7 0.0 1.5 1 1 0 1 1 1 0 NmrA-like family TusA PF01206.12 gi|352682711|ref|YP_004893235.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA Glyco_hydro_1 PF00232.13 gi|352682712|ref|YP_004893236.1| - 2.1e-21 75.6 7.2 1.6e-20 72.7 1.4 3.0 1 1 2 3 3 3 2 Glycosyl hydrolase family 1 Glyco_hydro_42 PF02449.10 gi|352682712|ref|YP_004893236.1| - 5.5e-06 25.7 0.3 1.6e-05 24.1 0.1 1.7 2 0 0 2 2 2 1 Beta-galactosidase Cellulase PF00150.13 gi|352682712|ref|YP_004893236.1| - 5.5e-05 22.5 0.2 0.00034 19.9 0.1 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) AP_endonuc_2 PF01261.19 gi|352682712|ref|YP_004893236.1| - 0.0017 17.7 0.1 0.046 12.9 0.0 2.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Glyco_hydro_35 PF01301.14 gi|352682712|ref|YP_004893236.1| - 0.0024 17.3 0.1 0.0048 16.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 DUF354 PF04007.7 gi|352682712|ref|YP_004893236.1| - 0.056 12.3 0.0 0.091 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Usp PF00582.21 gi|352682713|ref|YP_004893237.1| - 9.4e-11 42.0 0.0 2.2e-10 40.8 0.0 1.6 1 1 0 1 1 1 1 Universal stress protein family EntA_Immun PF08951.5 gi|352682713|ref|YP_004893237.1| - 0.0045 17.0 0.7 0.021 14.9 0.4 1.9 2 0 0 2 2 2 1 Enterocin A Immunity SRP54 PF00448.17 gi|352682713|ref|YP_004893237.1| - 0.068 12.6 0.0 0.097 12.1 0.0 1.1 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Ubiq-assoc PF09145.5 gi|352682713|ref|YP_004893237.1| - 0.089 12.6 0.4 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Ubiquitin-associated Gp_dh_N PF00044.19 gi|352682714|ref|YP_004893238.1| - 8.1e-20 71.3 0.3 3.3e-19 69.3 0.2 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|352682714|ref|YP_004893238.1| - 7.7e-14 51.6 0.4 1.4e-13 50.8 0.3 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.15 gi|352682714|ref|YP_004893238.1| - 7.9e-14 51.4 0.0 1.3e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.17 gi|352682714|ref|YP_004893238.1| - 9e-05 22.9 0.1 0.00033 21.1 0.1 2.0 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|352682714|ref|YP_004893238.1| - 0.00019 21.8 0.1 0.00061 20.1 0.1 1.9 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|352682714|ref|YP_004893238.1| - 0.00063 20.0 0.1 0.002 18.3 0.1 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|352682714|ref|YP_004893238.1| - 0.001 18.2 1.7 0.029 13.5 0.3 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|352682714|ref|YP_004893238.1| - 0.0047 17.3 0.7 0.071 13.5 0.1 2.9 2 2 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|352682714|ref|YP_004893238.1| - 0.016 14.1 0.2 0.027 13.4 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase IlvN PF07991.7 gi|352682714|ref|YP_004893238.1| - 0.017 14.4 0.5 0.49 9.7 0.3 2.4 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|352682714|ref|YP_004893238.1| - 0.018 14.6 0.4 0.046 13.3 0.3 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|352682714|ref|YP_004893238.1| - 0.055 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Semialdhyde_dhC PF02774.13 gi|352682714|ref|YP_004893238.1| - 0.082 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain AdoHcyase_NAD PF00670.16 gi|352682714|ref|YP_004893238.1| - 0.13 12.0 1.7 0.22 11.3 0.2 2.1 2 1 1 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|352682714|ref|YP_004893238.1| - 0.14 10.9 2.2 0.087 11.5 0.1 1.7 2 1 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family ThiF PF00899.16 gi|352682714|ref|YP_004893238.1| - 0.14 11.9 1.1 7.4 6.3 0.1 2.7 2 1 1 3 3 3 0 ThiF family PGK PF00162.14 gi|352682715|ref|YP_004893239.1| - 1.8e-70 237.4 0.0 2.1e-70 237.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase B12-binding PF02310.14 gi|352682715|ref|YP_004893239.1| - 0.022 14.6 0.4 0.18 11.7 0.0 2.4 2 1 1 3 3 3 0 B12 binding domain DUF2204 PF09970.4 gi|352682716|ref|YP_004893240.1| - 8.4e-58 194.8 5.4 9.6e-58 194.6 3.7 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.1 gi|352682716|ref|YP_004893240.1| - 0.0025 17.1 0.4 0.0044 16.4 0.2 1.5 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF3368 PF11848.3 gi|352682716|ref|YP_004893240.1| - 0.13 11.8 0.2 7.7 6.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) MacB_PCD PF12704.2 gi|352682717|ref|YP_004893241.1| - 0.058 12.9 1.3 0.068 12.7 0.9 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain tRNA-Thr_ED PF08915.6 gi|352682718|ref|YP_004893242.1| - 1.7e-46 157.6 0.1 4e-46 156.4 0.0 1.6 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|352682718|ref|YP_004893242.1| - 1.3e-23 82.7 0.7 3.3e-23 81.4 0.5 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|352682718|ref|YP_004893242.1| - 8e-16 58.0 0.4 1.5e-15 57.1 0.3 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) AdoMet_dc PF02675.10 gi|352682719|ref|YP_004893243.1| - 8.1e-34 115.7 0.0 9.2e-34 115.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Peptidase_M48 PF01435.13 gi|352682721|ref|YP_004893245.1| - 2.5e-37 128.6 0.0 4e-37 127.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_MA_2 PF13485.1 gi|352682721|ref|YP_004893245.1| - 0.15 12.1 0.9 0.35 10.9 0.1 1.9 2 0 0 2 2 2 0 Peptidase MA superfamily DUF2721 PF11026.3 gi|352682721|ref|YP_004893245.1| - 0.2 11.2 9.2 1.3 8.6 4.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Peptidase_M56 PF05569.6 gi|352682721|ref|YP_004893245.1| - 4.7 6.0 7.3 0.28 10.0 1.1 2.0 2 1 0 2 2 2 0 BlaR1 peptidase M56 SieB PF14163.1 gi|352682721|ref|YP_004893245.1| - 4.9 6.7 7.2 0.46 10.0 1.3 2.0 2 0 0 2 2 2 0 Superinfection exclusion protein B PadR PF03551.9 gi|352682722|ref|YP_004893246.1| - 1.2e-07 31.3 0.0 1.8e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family NAD_binding_5 PF07994.7 gi|352682723|ref|YP_004893247.1| - 1.6e-46 159.1 0.0 8.4e-46 156.7 0.0 1.9 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|352682723|ref|YP_004893247.1| - 1.4e-22 79.6 0.0 2.4e-22 78.8 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase CN_hydrolase PF00795.17 gi|352682724|ref|YP_004893248.1| - 9.7e-08 31.5 0.0 6.4e-06 25.6 0.0 2.2 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Glyco_tranf_2_3 PF13641.1 gi|352682725|ref|YP_004893249.1| - 4.5e-23 82.2 0.0 6.3e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|352682725|ref|YP_004893249.1| - 1.4e-13 51.0 2.9 2.2e-13 50.3 2.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|352682725|ref|YP_004893249.1| - 4.5e-09 36.2 0.2 9.1e-08 31.9 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|352682725|ref|YP_004893249.1| - 3.9e-06 26.2 0.0 5.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.9 gi|352682725|ref|YP_004893249.1| - 0.028 12.7 2.6 0.074 11.3 1.7 1.6 2 0 0 2 2 2 0 Cellulose synthase DUF1732 PF08340.6 gi|352682725|ref|YP_004893249.1| - 0.19 11.5 0.0 0.36 10.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1732) CCG PF02754.11 gi|352682726|ref|YP_004893250.1| - 1.4e-14 53.8 0.1 2.5e-10 40.2 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|352682726|ref|YP_004893250.1| - 1.9e-11 43.7 5.4 3.6e-11 42.9 3.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|352682726|ref|YP_004893250.1| - 2.8e-09 37.0 5.7 6.8e-09 35.8 4.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352682726|ref|YP_004893250.1| - 1.8e-08 34.0 7.7 4.2e-08 32.8 5.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|352682726|ref|YP_004893250.1| - 4e-08 33.4 4.3 9.4e-08 32.2 3.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352682726|ref|YP_004893250.1| - 1.7e-06 28.6 6.1 3.2e-06 27.7 4.2 1.5 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|352682726|ref|YP_004893250.1| - 1.7e-06 28.3 9.0 5.8e-06 26.5 6.0 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352682726|ref|YP_004893250.1| - 4.3e-06 27.0 7.3 0.0046 17.3 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352682726|ref|YP_004893250.1| - 6.7e-05 22.6 6.1 0.059 13.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352682726|ref|YP_004893250.1| - 8.8e-05 21.9 17.6 0.018 14.6 1.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352682726|ref|YP_004893250.1| - 0.021 14.7 4.1 0.021 14.7 2.8 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|352682726|ref|YP_004893250.1| - 0.025 14.9 12.3 0.027 14.7 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|352682726|ref|YP_004893250.1| - 0.072 12.9 21.1 0.068 13.0 3.9 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|352682726|ref|YP_004893250.1| - 0.084 13.4 19.5 0.13 12.8 4.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|352682726|ref|YP_004893250.1| - 0.13 12.8 5.1 1.4 9.5 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Med31 PF05669.7 gi|352682726|ref|YP_004893250.1| - 0.13 12.0 1.6 0.37 10.5 1.1 1.8 1 0 0 1 1 1 0 SOH1 DUF454 PF04304.8 gi|352682726|ref|YP_004893250.1| - 0.91 9.6 0.0 0.91 9.6 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF454) Cas_Cas4 PF01930.12 gi|352682727|ref|YP_004893251.1| - 1.8e-22 79.9 0.0 2.8e-22 79.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|352682727|ref|YP_004893251.1| - 1e-11 44.7 0.7 5e-06 26.0 0.3 2.8 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.1 gi|352682727|ref|YP_004893251.1| - 0.0027 17.7 0.1 0.0042 17.1 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|352682727|ref|YP_004893251.1| - 0.003 17.3 0.1 0.006 16.3 0.0 1.6 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF911 PF06023.7 gi|352682727|ref|YP_004893251.1| - 0.018 14.2 0.5 0.44 9.6 0.1 2.2 2 0 0 2 2 2 0 Archaeal protein of unknown function (DUF911) DUF91 PF01939.11 gi|352682727|ref|YP_004893251.1| - 0.081 12.0 0.9 0.11 11.6 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF91 DNA_RNApol_7kD PF03604.8 gi|352682727|ref|YP_004893251.1| - 0.14 11.6 0.5 0.14 11.6 0.3 1.9 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit GTP_EFTU PF00009.22 gi|352682728|ref|YP_004893252.1| - 9.7e-23 80.5 0.0 2e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|352682728|ref|YP_004893252.1| - 4.1e-10 39.7 0.0 8.2e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|352682728|ref|YP_004893252.1| - 2.8e-07 30.5 0.5 7.6e-07 29.1 0.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|352682728|ref|YP_004893252.1| - 0.00039 19.9 0.1 1.8 8.0 0.0 3.3 2 1 1 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|352682728|ref|YP_004893252.1| - 0.0036 17.2 0.1 0.018 15.0 0.0 2.0 1 1 1 2 2 2 1 50S ribosome-binding GTPase H_PPase PF03030.11 gi|352682729|ref|YP_004893253.1| - 6.7e-236 784.7 41.1 7.7e-236 784.5 28.5 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase V_ATPase_I PF01496.14 gi|352682730|ref|YP_004893254.1| - 2e-31 108.6 22.2 2.4e-28 98.5 13.8 3.5 2 1 0 2 2 2 1 V-type ATPase 116kDa subunit family Syntaxin_2 PF14523.1 gi|352682730|ref|YP_004893254.1| - 0.037 14.0 3.0 0.054 13.5 0.6 2.1 2 0 0 2 2 2 0 Syntaxin-like protein NYD-SP28 PF14772.1 gi|352682730|ref|YP_004893254.1| - 0.054 13.5 1.1 0.099 12.7 0.1 1.9 2 0 0 2 2 2 0 Sperm tail L31 PF09784.4 gi|352682730|ref|YP_004893254.1| - 0.11 12.5 1.0 4.8 7.2 0.0 3.2 2 1 1 3 3 3 0 Mitochondrial ribosomal protein L31 TMP_2 PF06791.8 gi|352682730|ref|YP_004893254.1| - 0.45 10.0 1.3 0.86 9.1 0.0 2.0 2 0 0 2 2 2 0 Prophage tail length tape measure protein HALZ PF02183.13 gi|352682730|ref|YP_004893254.1| - 0.63 9.8 6.4 0.56 9.9 0.1 3.3 4 0 0 4 4 4 0 Homeobox associated leucine zipper bZIP_1 PF00170.16 gi|352682730|ref|YP_004893254.1| - 4.9 7.1 12.4 9.9 6.2 0.0 3.7 4 0 0 4 4 4 0 bZIP transcription factor MTHFR PF02219.12 gi|352682731|ref|YP_004893255.1| - 0.00083 18.5 0.0 0.002 17.3 0.0 1.6 2 0 0 2 2 2 1 Methylenetetrahydrofolate reductase UPF0086 PF01868.11 gi|352682732|ref|YP_004893256.1| - 0.0016 17.9 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|352682733|ref|YP_004893257.1| - 1.2e-15 56.9 5.5 1.3e-15 56.7 3.8 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Enkurin PF13864.1 gi|352682733|ref|YP_004893257.1| - 0.0074 16.4 0.2 0.0074 16.4 0.1 1.2 1 0 0 1 1 1 1 Calmodulin-binding Ribosomal_S3_C PF00189.15 gi|352682734|ref|YP_004893258.1| - 2.7e-13 49.9 1.0 4.9e-13 49.0 0.7 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|352682734|ref|YP_004893258.1| - 3.2e-09 36.2 0.8 9e-09 34.7 0.1 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|352682734|ref|YP_004893258.1| - 0.00014 21.4 0.7 0.00027 20.5 0.5 1.5 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|352682734|ref|YP_004893258.1| - 0.027 14.1 0.1 0.061 12.9 0.1 1.7 1 0 0 1 1 1 0 KH domain ALAD PF00490.16 gi|352682735|ref|YP_004893259.1| - 2.8e-141 470.1 0.0 3.1e-141 469.9 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase PEP_mutase PF13714.1 gi|352682735|ref|YP_004893259.1| - 0.045 12.9 1.6 2.2 7.4 0.1 2.6 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase NAD_binding_7 PF13241.1 gi|352682736|ref|YP_004893260.1| - 1.4e-18 67.0 0.0 3.3e-18 65.8 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Rossmann-like PF10727.4 gi|352682736|ref|YP_004893260.1| - 2e-05 24.2 0.0 4.3e-05 23.2 0.0 1.6 2 0 0 2 2 2 1 Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|352682736|ref|YP_004893260.1| - 0.0014 17.8 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|352682736|ref|YP_004893260.1| - 0.011 16.1 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|352682736|ref|YP_004893260.1| - 0.022 14.1 0.0 0.038 13.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DAO PF01266.19 gi|352682736|ref|YP_004893260.1| - 0.044 12.6 0.8 2.7 6.8 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Oxidored_nitro PF00148.14 gi|352682736|ref|YP_004893260.1| - 0.056 12.0 0.0 0.074 11.6 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|352682736|ref|YP_004893260.1| - 0.057 13.1 0.1 7.7 6.2 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HEM4 PF02602.10 gi|352682737|ref|YP_004893261.1| - 6.7e-20 71.3 0.3 8.3e-20 71.0 0.2 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.15 gi|352682738|ref|YP_004893262.1| - 2.6e-45 154.6 0.2 3e-45 154.4 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Aminotran_3 PF00202.16 gi|352682739|ref|YP_004893263.1| - 5.5e-62 209.5 0.0 7.2e-62 209.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III GlutR_N PF05201.10 gi|352682740|ref|YP_004893264.1| - 1.7e-26 92.6 0.0 6.8e-26 90.6 0.0 2.0 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|352682740|ref|YP_004893264.1| - 2.7e-22 79.3 0.0 6.4e-22 78.1 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|352682740|ref|YP_004893264.1| - 1.1e-11 44.9 0.0 3.1e-11 43.5 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|352682740|ref|YP_004893264.1| - 1.7e-06 27.3 0.0 4.5e-06 25.8 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|352682740|ref|YP_004893264.1| - 1.8e-06 27.2 0.0 3.5e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|352682740|ref|YP_004893264.1| - 3.2e-06 27.0 0.0 7.3e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|352682740|ref|YP_004893264.1| - 0.00084 19.3 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|352682740|ref|YP_004893264.1| - 0.0015 18.7 0.1 0.0038 17.4 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|352682740|ref|YP_004893264.1| - 0.0015 18.4 0.1 0.0044 17.0 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain IlvN PF07991.7 gi|352682740|ref|YP_004893264.1| - 0.0022 17.3 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|352682740|ref|YP_004893264.1| - 0.0069 16.2 2.4 0.21 11.3 0.2 2.8 2 2 1 3 3 3 1 ThiF family adh_short PF00106.20 gi|352682740|ref|YP_004893264.1| - 0.007 16.3 0.1 0.021 14.7 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|352682740|ref|YP_004893264.1| - 0.012 15.3 0.0 0.029 14.1 0.0 1.7 2 0 0 2 2 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|352682740|ref|YP_004893264.1| - 0.019 14.4 0.0 0.04 13.3 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF364 PF04016.7 gi|352682740|ref|YP_004893264.1| - 0.022 14.0 0.0 0.04 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF364) DUF2338 PF10100.4 gi|352682740|ref|YP_004893264.1| - 0.026 12.8 0.0 0.047 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2338) 3HCDH_N PF02737.13 gi|352682740|ref|YP_004893264.1| - 0.038 13.6 0.0 0.16 11.5 0.0 2.1 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|352682740|ref|YP_004893264.1| - 0.045 14.2 0.2 0.26 11.8 0.0 2.2 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold KR PF08659.5 gi|352682740|ref|YP_004893264.1| - 0.062 12.9 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 KR domain Porphobil_deam PF01379.15 gi|352682741|ref|YP_004893265.1| - 1.5e-63 213.6 0.0 1.8e-63 213.3 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|352682741|ref|YP_004893265.1| - 8e-09 35.4 0.3 1.5e-08 34.6 0.2 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Cob_adeno_trans PF01923.13 gi|352682742|ref|YP_004893266.1| - 1.3e-11 44.6 0.0 2e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Ribosomal_S13 PF00416.17 gi|352682743|ref|YP_004893267.1| - 1.5e-26 92.8 0.0 1.8e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|352682743|ref|YP_004893267.1| - 0.017 13.6 0.0 0.021 13.3 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.20 gi|352682744|ref|YP_004893268.1| - 1.1e-15 56.7 0.1 1.1e-15 56.7 0.0 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|352682744|ref|YP_004893268.1| - 0.0021 18.3 0.4 0.0054 17.0 0.3 1.8 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain DUF910 PF06014.6 gi|352682744|ref|YP_004893268.1| - 0.019 14.8 0.0 0.22 11.4 0.0 2.5 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF910) Asparaginase_2 PF01112.13 gi|352682745|ref|YP_004893269.1| - 1.3e-61 208.0 8.6 1.7e-61 207.7 6.0 1.1 1 0 0 1 1 1 1 Asparaginase Peptidase_M20 PF01546.23 gi|352682745|ref|YP_004893269.1| - 0.17 11.3 1.4 0.29 10.6 1.0 1.5 1 1 0 1 1 1 0 Peptidase family M20/M25/M40 B5 PF03484.10 gi|352682746|ref|YP_004893270.1| - 0.00029 20.5 0.1 0.15 11.8 0.0 2.1 1 1 1 2 2 2 2 tRNA synthetase B5 domain DUF72 PF01904.13 gi|352682748|ref|YP_004893272.1| - 1.1e-35 123.4 0.0 1.3e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF3024 PF11225.3 gi|352682748|ref|YP_004893272.1| - 0.11 12.3 0.0 2.3 8.1 0.0 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3024) Radical_SAM PF04055.16 gi|352682752|ref|YP_004893276.1| - 1.2e-11 45.1 0.1 1.8e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|352682752|ref|YP_004893276.1| - 1.5e-09 38.1 0.0 2.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|352682752|ref|YP_004893276.1| - 1.4e-06 28.2 0.0 2.6e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain RIO1 PF01163.17 gi|352682753|ref|YP_004893277.1| - 1.1e-13 51.0 0.0 1.3e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|352682753|ref|YP_004893277.1| - 9.2e-09 34.6 0.0 1.4e-07 30.7 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|352682753|ref|YP_004893277.1| - 3.2e-08 33.6 0.0 6.6e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|352682753|ref|YP_004893277.1| - 2.5e-07 30.0 0.0 3.3e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|352682753|ref|YP_004893277.1| - 0.00081 18.6 0.0 0.00099 18.3 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|352682753|ref|YP_004893277.1| - 0.0074 15.3 0.0 0.011 14.8 0.0 1.4 1 1 0 1 1 1 1 Protein tyrosine kinase DUF202 PF02656.10 gi|352682755|ref|YP_004893279.1| - 0.041 14.1 2.8 0.07 13.3 2.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF202) TrbC PF04956.8 gi|352682755|ref|YP_004893279.1| - 0.068 13.1 5.4 0.94 9.5 0.1 2.1 2 0 0 2 2 2 0 TrbC/VIRB2 family CM2 PF03021.9 gi|352682755|ref|YP_004893279.1| - 0.3 10.6 3.2 0.32 10.5 2.2 1.1 1 0 0 1 1 1 0 Influenza C virus M2 protein DUF2892 PF11127.3 gi|352682755|ref|YP_004893279.1| - 6 6.7 7.4 20 5.0 0.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) Radical_SAM PF04055.16 gi|352682756|ref|YP_004893280.1| - 4.1e-15 56.3 1.1 1.2e-14 54.7 0.0 2.1 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|352682756|ref|YP_004893280.1| - 4.6e-06 26.7 0.0 8.3e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|352682756|ref|YP_004893280.1| - 2.3e-05 24.4 0.0 4.3e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Hydrolase_6 PF13344.1 gi|352682756|ref|YP_004893280.1| - 0.026 14.4 0.0 0.062 13.2 0.0 1.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase bZIP_Maf PF03131.12 gi|352682757|ref|YP_004893281.1| - 0.0063 16.7 1.5 0.012 15.9 1.0 1.4 1 0 0 1 1 1 1 bZIP Maf transcription factor HALZ PF02183.13 gi|352682757|ref|YP_004893281.1| - 0.01 15.5 5.6 0.023 14.4 3.9 1.7 1 0 0 1 1 1 0 Homeobox associated leucine zipper Apolipoprotein PF01442.13 gi|352682757|ref|YP_004893281.1| - 0.012 15.1 2.6 0.25 10.8 2.8 2.0 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain bZIP_1 PF00170.16 gi|352682757|ref|YP_004893281.1| - 0.013 15.4 6.9 0.022 14.7 4.8 1.4 1 0 0 1 1 1 0 bZIP transcription factor HAUS5 PF14817.1 gi|352682757|ref|YP_004893281.1| - 0.03 12.9 1.1 0.039 12.5 0.8 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 PQQ PF01011.16 gi|352682757|ref|YP_004893281.1| - 0.035 13.6 0.1 0.08 12.5 0.0 1.6 1 0 0 1 1 1 0 PQQ enzyme repeat APG6 PF04111.7 gi|352682757|ref|YP_004893281.1| - 0.043 12.8 0.7 0.062 12.3 0.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF904 PF06005.7 gi|352682757|ref|YP_004893281.1| - 0.047 13.9 7.2 0.047 13.9 5.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF904) ADIP PF11559.3 gi|352682757|ref|YP_004893281.1| - 0.051 13.4 2.8 0.072 12.9 2.0 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding PV-1 PF06637.6 gi|352682757|ref|YP_004893281.1| - 0.073 11.6 3.2 0.1 11.1 2.2 1.1 1 0 0 1 1 1 0 PV-1 protein (PLVAP) FlaC_arch PF05377.6 gi|352682757|ref|YP_004893281.1| - 0.084 12.7 1.0 0.14 12.0 0.7 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) UPF0449 PF15136.1 gi|352682757|ref|YP_004893281.1| - 0.091 12.9 0.2 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 Lipoprotein_20 PF13942.1 gi|352682757|ref|YP_004893281.1| - 0.28 10.6 5.2 0.5 9.8 3.6 1.4 1 1 0 1 1 1 0 YfhG lipoprotein Spc24 PF08286.6 gi|352682757|ref|YP_004893281.1| - 0.42 10.3 2.9 0.74 9.5 2.0 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DivIC PF04977.10 gi|352682757|ref|YP_004893281.1| - 0.63 9.5 4.9 1.4 8.4 3.4 1.6 1 0 0 1 1 1 0 Septum formation initiator Microtub_assoc PF07989.6 gi|352682757|ref|YP_004893281.1| - 0.94 9.3 5.7 0.7 9.7 1.9 2.0 2 0 0 2 2 2 0 Microtubule associated NurA PF09376.5 gi|352682758|ref|YP_004893282.1| - 5.9e-06 25.9 2.4 0.0022 17.5 1.7 2.7 1 1 0 1 1 1 1 NurA domain T2SF PF00482.18 gi|352682759|ref|YP_004893283.1| - 0.13 12.1 0.2 0.28 11.0 0.1 1.6 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F AAA_30 PF13604.1 gi|352682760|ref|YP_004893284.1| - 0.0017 17.9 0.1 0.025 14.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF2791 PF10923.3 gi|352682760|ref|YP_004893284.1| - 0.0028 16.3 0.2 0.0077 14.8 0.1 1.7 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) Sulfolobus_pRN PF05584.6 gi|352682760|ref|YP_004893284.1| - 0.0076 16.1 0.2 0.11 12.5 0.0 3.0 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein AAA PF00004.24 gi|352682760|ref|YP_004893284.1| - 0.029 14.5 0.0 0.095 12.9 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MarR_2 PF12802.2 gi|352682760|ref|YP_004893284.1| - 0.069 12.8 0.1 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 MarR family B-block_TFIIIC PF04182.7 gi|352682760|ref|YP_004893284.1| - 0.079 12.8 1.9 0.65 9.8 0.0 3.0 3 0 0 3 3 3 0 B-block binding subunit of TFIIIC HAUS6_N PF14661.1 gi|352682760|ref|YP_004893284.1| - 0.57 9.4 4.7 1.1 8.5 3.2 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus IncA PF04156.9 gi|352682760|ref|YP_004893284.1| - 0.99 8.9 8.6 0.72 9.4 3.8 2.2 2 0 0 2 2 2 0 IncA protein Acetyltransf_1 PF00583.19 gi|352682761|ref|YP_004893285.1| - 8.1e-18 64.2 0.0 1.1e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|352682761|ref|YP_004893285.1| - 2.6e-12 46.7 0.0 4.2e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|352682761|ref|YP_004893285.1| - 1.9e-09 37.6 0.0 2.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|352682761|ref|YP_004893285.1| - 2.1e-08 34.1 0.0 3e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|352682761|ref|YP_004893285.1| - 6.7e-08 32.1 0.0 9.6e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|352682761|ref|YP_004893285.1| - 2.2e-07 30.9 0.0 2.8e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|352682761|ref|YP_004893285.1| - 5.6e-07 29.8 0.0 6.8e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|352682761|ref|YP_004893285.1| - 0.0011 18.5 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|352682761|ref|YP_004893285.1| - 0.028 14.2 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.2 gi|352682761|ref|YP_004893285.1| - 0.047 12.5 0.3 0.11 11.3 0.1 1.7 1 1 1 2 2 2 0 GNAT acetyltransferase Acetyltransf_CG PF14542.1 gi|352682761|ref|YP_004893285.1| - 0.094 12.6 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase CbiA PF01656.18 gi|352682762|ref|YP_004893286.1| - 0.00012 21.5 0.6 0.0092 15.3 0.1 2.1 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|352682762|ref|YP_004893286.1| - 0.087 12.7 0.1 0.44 10.4 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|352682762|ref|YP_004893286.1| - 0.12 13.2 0.0 0.23 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain Metallophos PF00149.23 gi|352682763|ref|YP_004893287.1| - 1.5e-07 31.0 0.4 5.7e-07 29.1 0.0 2.0 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|352682763|ref|YP_004893287.1| - 1.4e-06 28.1 0.0 2.5e-06 27.3 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MobB PF03205.9 gi|352682764|ref|YP_004893288.1| - 4.1e-08 33.0 0.1 8.1e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|352682764|ref|YP_004893288.1| - 1.3e-05 24.7 0.0 2.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DNA_primase_lrg PF04104.9 gi|352682765|ref|YP_004893289.1| - 8.1e-33 113.7 0.0 1.6e-32 112.8 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF1886 PF09171.5 gi|352682766|ref|YP_004893290.1| - 2.6e-80 269.0 0.0 3e-80 268.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) PhnA PF03831.9 gi|352682767|ref|YP_004893291.1| - 0.00079 18.7 0.1 0.0014 17.9 0.1 1.3 1 0 0 1 1 1 1 PhnA protein DUF126 PF01989.11 gi|352682768|ref|YP_004893292.1| - 1.4e-24 85.5 0.3 1.8e-24 85.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|352682769|ref|YP_004893293.1| - 6.9e-75 252.0 0.0 7.8e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Glyco_trans_4_4 PF13579.1 gi|352682769|ref|YP_004893293.1| - 0.026 14.6 0.1 0.63 10.1 0.1 2.7 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain Peroxin-22 PF12827.2 gi|352682769|ref|YP_004893293.1| - 0.13 11.9 0.0 2.3 7.9 0.0 2.5 1 1 1 2 2 2 0 Peroxisomal biogenesis protein family UbiD PF01977.11 gi|352682770|ref|YP_004893294.1| - 5.7e-99 331.3 0.0 6.9e-99 331.0 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase zinc_ribbon_5 PF13719.1 gi|352682771|ref|YP_004893295.1| - 2.5e-07 30.1 2.8 0.0004 19.9 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352682771|ref|YP_004893295.1| - 4.3e-07 29.5 1.9 0.0013 18.3 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|352682771|ref|YP_004893295.1| - 6.4e-06 25.7 4.6 0.0058 16.2 0.3 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|352682771|ref|YP_004893295.1| - 7.6e-05 22.3 0.2 0.00014 21.4 0.1 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit CpXC PF14353.1 gi|352682771|ref|YP_004893295.1| - 0.00027 20.9 1.3 0.45 10.4 0.1 2.1 1 1 0 2 2 2 2 CpXC protein Lar_restr_allev PF14354.1 gi|352682771|ref|YP_004893295.1| - 0.00058 20.1 0.2 0.00067 19.9 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|352682771|ref|YP_004893295.1| - 0.0014 17.7 4.9 0.0072 15.4 3.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain Elf1 PF05129.8 gi|352682771|ref|YP_004893295.1| - 0.0022 17.6 0.2 0.0033 17.0 0.1 1.4 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like FYDLN_acid PF09538.5 gi|352682771|ref|YP_004893295.1| - 0.0027 18.2 0.6 0.23 12.0 0.4 2.1 1 1 0 1 1 1 1 Protein of unknown function (FYDLN_acid) zf-ISL3 PF14690.1 gi|352682771|ref|YP_004893295.1| - 0.0044 17.0 0.7 2.8 8.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|352682771|ref|YP_004893295.1| - 0.0046 16.4 5.9 0.45 10.0 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|352682771|ref|YP_004893295.1| - 0.0049 17.0 1.7 3.3 8.2 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger IBR PF01485.16 gi|352682771|ref|YP_004893295.1| - 0.0052 16.6 0.2 0.0084 15.9 0.1 1.3 1 0 0 1 1 1 1 IBR domain zf-IS66 PF13005.2 gi|352682771|ref|YP_004893295.1| - 0.0057 16.5 0.2 0.55 10.2 0.0 2.3 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 PhnA_Zn_Ribbon PF08274.7 gi|352682771|ref|YP_004893295.1| - 0.0066 16.1 3.3 0.16 11.7 2.3 2.3 1 1 0 1 1 1 1 PhnA Zinc-Ribbon HypA PF01155.14 gi|352682771|ref|YP_004893295.1| - 0.0082 15.8 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|352682771|ref|YP_004893295.1| - 0.01 15.9 4.5 1.3 9.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|352682771|ref|YP_004893295.1| - 0.016 15.1 4.5 0.19 11.6 3.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Trm112p PF03966.11 gi|352682771|ref|YP_004893295.1| - 0.017 15.4 0.2 7.3 7.0 0.0 2.2 2 0 0 2 2 2 0 Trm112p-like protein zf-H2C2_2 PF13465.1 gi|352682771|ref|YP_004893295.1| - 0.018 15.3 3.3 2.5 8.5 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain T4_baseplate PF12322.3 gi|352682771|ref|YP_004893295.1| - 0.026 13.7 0.3 1.4 8.1 0.1 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein zf-AN1 PF01428.11 gi|352682771|ref|YP_004893295.1| - 0.029 14.2 1.4 2.6 7.9 0.1 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger zf-RING_2 PF13639.1 gi|352682771|ref|YP_004893295.1| - 0.03 14.1 0.3 0.043 13.6 0.2 1.3 1 0 0 1 1 1 0 Ring finger domain Cys_rich_CPXG PF14255.1 gi|352682771|ref|YP_004893295.1| - 0.032 14.0 2.1 0.13 12.1 1.5 1.8 1 1 0 1 1 1 0 Cysteine-rich CPXCG DZR PF12773.2 gi|352682771|ref|YP_004893295.1| - 0.033 14.0 1.7 0.22 11.3 1.3 1.9 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|352682771|ref|YP_004893295.1| - 0.037 13.3 3.7 0.39 10.0 2.3 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|352682771|ref|YP_004893295.1| - 0.042 13.3 2.9 2.8 7.5 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Acetone_carb_G PF08882.6 gi|352682771|ref|YP_004893295.1| - 0.044 13.8 0.9 0.21 11.6 0.0 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-NADH-PPase PF09297.6 gi|352682771|ref|YP_004893295.1| - 0.048 13.1 0.8 3.7 7.1 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF329 PF03884.9 gi|352682771|ref|YP_004893295.1| - 0.052 13.1 0.2 6.8 6.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF329) TFIIS_C PF01096.13 gi|352682771|ref|YP_004893295.1| - 0.054 13.1 2.9 1.9 8.1 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|352682771|ref|YP_004893295.1| - 0.062 12.5 0.4 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-C2H2 PF00096.21 gi|352682771|ref|YP_004893295.1| - 0.065 13.6 3.6 4.9 7.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-HYPF PF07503.7 gi|352682771|ref|YP_004893295.1| - 0.068 12.5 3.1 0.28 10.6 0.3 2.1 2 0 0 2 2 2 0 HypF finger DNA_RNApol_7kD PF03604.8 gi|352682771|ref|YP_004893295.1| - 0.069 12.6 0.5 8.7 5.9 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_KTR PF14205.1 gi|352682771|ref|YP_004893295.1| - 0.079 12.4 0.1 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Cysteine-rich KTR zf-DNL PF05180.7 gi|352682771|ref|YP_004893295.1| - 0.085 12.5 0.2 0.094 12.4 0.2 1.2 1 0 0 1 1 1 0 DNL zinc finger Zn_Tnp_IS1595 PF12760.2 gi|352682771|ref|YP_004893295.1| - 0.086 12.6 5.2 2.2 8.1 0.5 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_UBOX PF13445.1 gi|352682771|ref|YP_004893295.1| - 0.09 12.5 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 RING-type zinc-finger zf-FPG_IleRS PF06827.9 gi|352682771|ref|YP_004893295.1| - 0.1 12.2 1.5 0.55 9.9 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc-ribbons_6 PF07191.7 gi|352682771|ref|YP_004893295.1| - 0.11 12.3 0.0 4 7.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbons YhfH PF14149.1 gi|352682771|ref|YP_004893295.1| - 0.11 12.3 0.5 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.6 gi|352682771|ref|YP_004893295.1| - 0.12 12.0 1.7 0.9 9.2 1.1 2.1 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Zn_Tnp_IS1 PF03811.8 gi|352682771|ref|YP_004893295.1| - 0.13 11.8 1.4 6.5 6.3 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Prok-RING_1 PF14446.1 gi|352682771|ref|YP_004893295.1| - 0.13 11.9 0.7 5.6 6.7 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-tcix PF14952.1 gi|352682771|ref|YP_004893295.1| - 0.14 11.5 5.4 1.5 8.2 0.3 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF2387 PF09526.5 gi|352682771|ref|YP_004893295.1| - 0.14 12.0 1.7 0.42 10.5 1.2 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF4379 PF14311.1 gi|352682771|ref|YP_004893295.1| - 0.15 11.8 3.3 0.99 9.2 2.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) ADK_lid PF05191.9 gi|352682771|ref|YP_004893295.1| - 0.15 11.7 1.0 4.1 7.1 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF1936 PF09151.5 gi|352682771|ref|YP_004893295.1| - 0.17 11.4 4.8 3.6 7.1 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) DUF35_N PF12172.3 gi|352682771|ref|YP_004893295.1| - 0.2 11.5 1.3 4.6 7.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CSL PF05207.8 gi|352682771|ref|YP_004893295.1| - 0.24 10.9 2.3 6.9 6.2 0.1 2.1 1 1 1 2 2 2 0 CSL zinc finger A2L_zn_ribbon PF08792.5 gi|352682771|ref|YP_004893295.1| - 0.24 10.8 3.3 6.5 6.3 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|352682771|ref|YP_004893295.1| - 0.24 11.0 1.6 5.3 6.8 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-RING_3 PF14369.1 gi|352682771|ref|YP_004893295.1| - 0.89 9.6 4.6 8 6.5 0.3 2.2 1 1 1 2 2 2 0 zinc-finger zf-Mss51 PF13824.1 gi|352682771|ref|YP_004893295.1| - 1.2 9.1 4.4 5.3 6.9 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF3797 PF12677.2 gi|352682771|ref|YP_004893295.1| - 1.4 8.6 4.8 6.9 6.3 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DNA_ligase_ZBD PF03119.11 gi|352682771|ref|YP_004893295.1| - 2.1 8.1 5.2 3.9 7.2 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2082 PF09855.4 gi|352682771|ref|YP_004893295.1| - 6.3 6.7 5.8 20 5.0 0.4 2.2 1 1 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rubredoxin PF00301.15 gi|352682771|ref|YP_004893295.1| - 8.9 6.2 9.4 6.7 6.6 3.1 2.7 1 1 1 3 3 3 0 Rubredoxin HSP20 PF00011.16 gi|352682772|ref|YP_004893296.1| - 2.1e-09 37.1 0.0 2.7e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family tRNA_int_endo PF01974.12 gi|352682773|ref|YP_004893297.1| - 1.1e-24 86.0 0.0 2.6e-24 84.8 0.0 1.6 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|352682773|ref|YP_004893297.1| - 3.7e-20 71.2 1.8 5.6e-20 70.6 1.2 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|352682773|ref|YP_004893297.1| - 0.00095 18.5 0.4 0.0022 17.4 0.3 1.6 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term Nup35_RRM_2 PF14605.1 gi|352682773|ref|YP_004893297.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif Molydop_binding PF01568.16 gi|352682774|ref|YP_004893298.1| - 0.00048 19.9 0.2 0.0073 16.1 0.0 2.1 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|352682774|ref|YP_004893298.1| - 0.088 12.7 0.2 0.65 9.9 0.2 2.0 1 1 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain tRNA-synt_2b PF00587.20 gi|352682775|ref|YP_004893299.1| - 9.9e-47 158.7 0.0 1.3e-46 158.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|352682775|ref|YP_004893299.1| - 1.6e-15 56.7 0.0 3.7e-15 55.6 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain Thioredoxin_3 PF13192.1 gi|352682775|ref|YP_004893299.1| - 0.0045 16.7 0.0 0.036 13.8 0.0 2.4 2 0 0 2 2 2 1 Thioredoxin domain zf-ribbon_3 PF13248.1 gi|352682775|ref|YP_004893299.1| - 0.028 13.6 0.7 0.64 9.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|352682775|ref|YP_004893299.1| - 0.14 12.4 0.4 15 5.9 0.1 2.4 1 1 0 2 2 2 0 Restriction alleviation protein Lar Arginase PF00491.16 gi|352682776|ref|YP_004893300.1| - 2e-39 135.5 0.1 2.3e-39 135.3 0.1 1.0 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.8 gi|352682777|ref|YP_004893301.1| - 4.7e-05 22.7 4.6 0.00011 21.6 3.2 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-H2C2_2 PF13465.1 gi|352682777|ref|YP_004893301.1| - 0.0011 19.1 1.0 0.82 10.0 0.0 2.1 2 0 0 2 2 2 2 Zinc-finger double domain DUF2072 PF09845.4 gi|352682777|ref|YP_004893301.1| - 0.0011 18.8 0.1 0.0011 18.8 0.1 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zf-C2H2 PF00096.21 gi|352682777|ref|YP_004893301.1| - 0.0014 18.8 3.1 0.043 14.1 0.2 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|352682777|ref|YP_004893301.1| - 0.01 15.5 0.3 3.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-CSL PF05207.8 gi|352682777|ref|YP_004893301.1| - 0.014 14.8 0.2 0.017 14.5 0.2 1.2 1 0 0 1 1 1 0 CSL zinc finger zf-C2H2_4 PF13894.1 gi|352682777|ref|YP_004893301.1| - 0.015 15.5 1.1 3.8 8.0 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.2 gi|352682777|ref|YP_004893301.1| - 0.029 14.1 0.8 0.32 10.8 0.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.17 gi|352682777|ref|YP_004893301.1| - 0.03 14.0 0.3 0.038 13.7 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.1 gi|352682777|ref|YP_004893301.1| - 0.061 12.9 1.0 0.092 12.4 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|352682777|ref|YP_004893301.1| - 0.07 12.8 0.1 0.076 12.7 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FANCL_C PF11793.3 gi|352682777|ref|YP_004893301.1| - 0.077 12.9 0.3 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 FANCL C-terminal domain zf-CHY PF05495.7 gi|352682777|ref|YP_004893301.1| - 0.092 12.9 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|352682777|ref|YP_004893301.1| - 0.11 12.9 2.2 3 8.3 0.0 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-RING_3 PF14369.1 gi|352682777|ref|YP_004893301.1| - 0.12 12.4 1.6 0.25 11.3 1.1 1.6 1 1 0 1 1 1 0 zinc-finger C1_3 PF07649.7 gi|352682777|ref|YP_004893301.1| - 0.19 11.8 1.0 4 7.5 0.0 2.1 2 0 0 2 2 2 0 C1-like domain zinc_ribbon_2 PF13240.1 gi|352682777|ref|YP_004893301.1| - 0.21 11.0 1.9 4.6 6.8 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|352682777|ref|YP_004893301.1| - 0.4 10.3 0.1 0.4 10.3 0.1 1.9 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_ribbon_recom PF13408.1 gi|352682777|ref|YP_004893301.1| - 0.72 10.1 4.1 8.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain PyrI_C PF02748.10 gi|352682777|ref|YP_004893301.1| - 0.83 9.1 3.6 10 5.6 0.6 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.10 gi|352682777|ref|YP_004893301.1| - 3.7 7.3 4.9 5.9 6.7 0.1 2.1 1 1 0 2 2 2 0 BED zinc finger zf-C2HC_2 PF13913.1 gi|352682777|ref|YP_004893301.1| - 9.9 5.9 8.6 8.7 6.1 0.9 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type CTP_transf_2 PF01467.21 gi|352682778|ref|YP_004893302.1| - 1e-09 38.6 0.0 1.6e-09 38.0 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase ATP-sulfurylase PF01747.12 gi|352682778|ref|YP_004893302.1| - 0.0064 15.8 0.0 0.81 8.9 0.0 2.1 2 0 0 2 2 2 2 ATP-sulfurylase FAD_syn PF06574.7 gi|352682778|ref|YP_004893302.1| - 0.081 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase CBS PF00571.23 gi|352682779|ref|YP_004893303.1| - 2e-28 97.9 1.6 5.6e-15 54.8 0.0 2.1 2 0 0 2 2 2 2 CBS domain GAF_2 PF13185.1 gi|352682779|ref|YP_004893303.1| - 0.0063 17.0 0.1 2.9 8.3 0.0 2.1 1 1 1 2 2 2 2 GAF domain HTH_17 PF12728.2 gi|352682780|ref|YP_004893304.1| - 6.1e-14 52.0 0.8 2.3e-13 50.1 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|352682780|ref|YP_004893304.1| - 2.8e-08 33.4 0.1 5.6e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.18 gi|352682780|ref|YP_004893304.1| - 2.5e-07 30.1 0.0 5.3e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.7 gi|352682780|ref|YP_004893304.1| - 0.0047 16.3 0.0 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|352682780|ref|YP_004893304.1| - 0.0049 16.4 0.0 0.014 14.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain P22_Cro PF14549.1 gi|352682780|ref|YP_004893304.1| - 0.0093 15.6 0.2 0.022 14.4 0.1 1.7 1 1 0 1 1 1 1 DNA-binding transcriptional regulator Cro Terminase_5 PF06056.7 gi|352682780|ref|YP_004893304.1| - 0.049 13.1 0.2 0.097 12.2 0.1 1.6 1 1 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) AA_permease_2 PF13520.1 gi|352682781|ref|YP_004893305.1| - 2.2e-42 145.1 51.7 2.2e-42 145.1 35.9 2.3 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|352682781|ref|YP_004893305.1| - 2.7e-30 105.1 61.1 2.7e-30 105.1 42.3 2.3 1 1 0 1 1 1 1 Amino acid permease MS_channel PF00924.13 gi|352682782|ref|YP_004893306.1| - 1.4e-11 44.1 0.8 1.4e-11 44.1 0.6 1.5 1 1 0 1 1 1 1 Mechanosensitive ion channel MacB_PCD PF12704.2 gi|352682782|ref|YP_004893306.1| - 0.036 13.6 0.0 0.036 13.6 0.0 2.6 1 1 2 3 3 3 0 MacB-like periplasmic core domain Peptidase_M50 PF02163.17 gi|352682782|ref|YP_004893306.1| - 0.052 12.5 4.4 0.11 11.4 3.0 1.4 1 1 0 1 1 1 0 Peptidase family M50 DsbB PF02600.11 gi|352682782|ref|YP_004893306.1| - 4.7 6.9 7.8 0.37 10.5 1.5 1.9 2 0 0 2 2 2 0 Disulfide bond formation protein DsbB TrkA_C PF02080.16 gi|352682783|ref|YP_004893307.1| - 2.2e-07 30.3 0.1 1e-06 28.2 0.0 2.2 2 0 0 2 2 2 1 TrkA-C domain TrkA_N PF02254.13 gi|352682783|ref|YP_004893307.1| - 5.2e-06 26.4 0.0 7.2e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain dTMP_synthase PF02593.9 gi|352682783|ref|YP_004893307.1| - 0.057 12.7 0.0 0.14 11.4 0.0 1.5 1 1 1 2 2 2 0 Thymidylate synthase Renin_r PF07850.9 gi|352682784|ref|YP_004893308.1| - 7.5 6.9 7.7 1.2 9.5 1.1 2.5 2 0 0 2 2 2 0 Renin receptor-like protein Glyoxalase_2 PF12681.2 gi|352682785|ref|YP_004893309.1| - 0.053 14.1 0.0 0.084 13.4 0.0 1.4 1 0 0 1 1 1 0 Glyoxalase-like domain Peptidase_M54 PF07998.6 gi|352682786|ref|YP_004893310.1| - 3.6e-26 92.1 0.1 5.2e-26 91.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|352682786|ref|YP_004893310.1| - 0.00097 18.8 0.0 0.0018 18.0 0.0 1.3 1 1 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|352682786|ref|YP_004893310.1| - 0.0016 17.3 0.1 0.0023 16.8 0.1 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.1 gi|352682786|ref|YP_004893310.1| - 0.0036 17.8 0.0 0.0048 17.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|352682786|ref|YP_004893310.1| - 0.0072 14.8 0.2 0.019 13.4 0.4 1.4 2 0 0 2 2 2 1 Putative peptidase family DUF1025 PF06262.6 gi|352682786|ref|YP_004893310.1| - 0.013 15.2 0.1 0.021 14.5 0.1 1.3 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase Peptidase_M43 PF05572.8 gi|352682786|ref|YP_004893310.1| - 0.014 15.0 0.1 0.019 14.6 0.1 1.1 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.1 gi|352682786|ref|YP_004893310.1| - 0.026 14.4 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_2 PF13574.1 gi|352682786|ref|YP_004893310.1| - 0.03 14.3 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|352682786|ref|YP_004893310.1| - 0.15 11.5 0.2 0.18 11.2 0.2 1.3 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like GDPD PF03009.12 gi|352682787|ref|YP_004893311.1| - 6.4e-33 114.3 0.0 3.2e-32 112.0 0.0 1.9 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|352682787|ref|YP_004893311.1| - 3.7e-05 23.7 2.2 0.001 19.1 1.1 2.4 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family MobB PF03205.9 gi|352682788|ref|YP_004893312.1| - 2.2e-21 76.0 0.0 2.6e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|352682788|ref|YP_004893312.1| - 0.0039 16.9 0.1 0.0062 16.2 0.0 1.3 1 0 0 1 1 1 1 NTPase CbiA PF01656.18 gi|352682788|ref|YP_004893312.1| - 0.014 14.8 0.6 0.039 13.3 0.4 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.1 gi|352682788|ref|YP_004893312.1| - 0.054 13.3 0.0 0.096 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain Amidoligase_2 PF12224.3 gi|352682788|ref|YP_004893312.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Putative amidoligase enzyme KaiC PF06745.8 gi|352682788|ref|YP_004893312.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 2 0 0 2 2 2 0 KaiC MoeA_N PF03453.12 gi|352682789|ref|YP_004893313.1| - 5.2e-36 123.4 0.0 8.1e-36 122.8 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|352682789|ref|YP_004893313.1| - 4.3e-18 65.1 0.0 7.4e-18 64.3 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain Fibrillarin PF01269.12 gi|352682790|ref|YP_004893314.1| - 1.8e-97 324.7 0.0 2e-97 324.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|352682790|ref|YP_004893314.1| - 3.1e-06 26.8 0.0 4.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BMFP PF04380.8 gi|352682790|ref|YP_004893314.1| - 0.085 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Membrane fusogenic activity Nop PF01798.13 gi|352682791|ref|YP_004893315.1| - 1.4e-50 170.4 0.2 2.9e-50 169.4 0.1 1.5 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|352682791|ref|YP_004893315.1| - 1.5e-22 79.1 0.4 4e-22 77.7 0.1 2.0 2 0 0 2 2 2 1 NOSIC (NUC001) domain Focal_AT PF03623.8 gi|352682791|ref|YP_004893315.1| - 0.005 16.3 0.4 0.013 15.0 0.0 1.9 2 0 0 2 2 2 1 Focal adhesion targeting region CHAD PF05235.9 gi|352682791|ref|YP_004893315.1| - 0.033 13.7 0.5 0.091 12.3 0.3 1.8 1 1 0 1 1 1 0 CHAD domain GatB_N PF02934.10 gi|352682792|ref|YP_004893316.1| - 6.9e-78 261.4 0.0 1e-77 260.8 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.9 gi|352682792|ref|YP_004893316.1| - 2.9e-09 36.9 0.0 8.1e-09 35.5 0.0 1.8 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.13 gi|352682792|ref|YP_004893316.1| - 6.3e-09 35.7 1.4 4.4e-08 32.9 0.5 2.5 2 1 0 2 2 2 1 GatB domain PNPase PF03726.9 gi|352682792|ref|YP_004893316.1| - 0.0015 18.7 1.8 0.36 11.1 0.6 2.9 2 0 0 2 2 2 2 Polyribonucleotide nucleotidyltransferase, RNA binding domain RrnaAD PF00398.15 gi|352682793|ref|YP_004893317.1| - 3.9e-44 150.6 0.0 4.5e-44 150.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|352682793|ref|YP_004893317.1| - 5e-11 42.6 0.0 6.8e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352682793|ref|YP_004893317.1| - 1.1e-07 32.4 0.0 1.7e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352682793|ref|YP_004893317.1| - 0.00027 20.7 0.0 0.00038 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352682793|ref|YP_004893317.1| - 0.00099 18.7 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352682793|ref|YP_004893317.1| - 0.0022 18.4 0.0 0.004 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|352682793|ref|YP_004893317.1| - 0.0023 17.0 0.0 0.0036 16.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.11 gi|352682793|ref|YP_004893317.1| - 0.0078 15.8 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|352682793|ref|YP_004893317.1| - 0.011 15.1 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|352682793|ref|YP_004893317.1| - 0.013 14.9 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|352682793|ref|YP_004893317.1| - 0.014 15.7 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|352682793|ref|YP_004893317.1| - 0.025 14.0 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.6 gi|352682793|ref|YP_004893317.1| - 0.094 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Lactamase_B_2 PF12706.2 gi|352682794|ref|YP_004893318.1| - 1.3e-28 99.9 0.0 2e-28 99.2 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352682794|ref|YP_004893318.1| - 4.6e-11 42.7 0.1 1.1e-09 38.1 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|352682794|ref|YP_004893318.1| - 0.0015 18.2 0.0 0.0053 16.4 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Methyltransf_11 PF08241.7 gi|352682795|ref|YP_004893319.1| - 2e-08 34.6 0.0 2.9e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352682795|ref|YP_004893319.1| - 7.1e-05 23.1 0.0 0.0001 22.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352682795|ref|YP_004893319.1| - 0.00018 21.1 0.0 0.00029 20.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352682795|ref|YP_004893319.1| - 0.0012 19.3 0.0 0.0023 18.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|352682795|ref|YP_004893319.1| - 0.0044 17.5 0.0 0.0066 17.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|352682795|ref|YP_004893319.1| - 0.048 13.6 0.2 0.074 13.0 0.1 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352682795|ref|YP_004893319.1| - 0.052 13.2 0.0 0.078 12.6 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain tRNA-synt_1b PF00579.20 gi|352682796|ref|YP_004893320.1| - 5.5e-38 130.7 0.0 9.1e-38 130.0 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF371 PF04027.8 gi|352682797|ref|YP_004893321.1| - 2e-35 121.2 0.0 2.3e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) CTP_transf_1 PF01148.15 gi|352682798|ref|YP_004893322.1| - 8.4e-07 28.8 14.0 3.4e-06 26.9 9.7 2.0 1 1 0 1 1 1 1 Cytidylyltransferase family 7TM_GPCR_Srab PF10292.4 gi|352682798|ref|YP_004893322.1| - 0.019 13.7 0.1 0.031 12.9 0.1 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR receptor class ab chemoreceptor Lysis_S PF04971.7 gi|352682798|ref|YP_004893322.1| - 2.3 7.9 4.7 0.83 9.3 0.2 2.3 2 0 0 2 2 2 0 Lysis protein S PIN PF01850.16 gi|352682799|ref|YP_004893323.1| - 6.8e-05 23.1 2.0 0.00028 21.1 0.5 2.0 1 1 1 2 2 2 1 PIN domain UPF0278 PF08745.6 gi|352682799|ref|YP_004893323.1| - 0.021 14.0 0.8 0.035 13.3 0.3 1.4 1 1 0 1 1 1 0 UPF0278 family PIN_2 PF10130.4 gi|352682799|ref|YP_004893323.1| - 0.025 14.6 0.2 0.032 14.2 0.1 1.4 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.1 gi|352682799|ref|YP_004893323.1| - 0.056 13.1 0.0 0.38 10.4 0.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4411) NAD_kinase PF01513.16 gi|352682800|ref|YP_004893324.1| - 4.5e-24 84.7 0.1 5.4e-24 84.4 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|352682800|ref|YP_004893324.1| - 0.033 13.6 0.0 0.05 13.0 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Mut7-C PF01927.11 gi|352682801|ref|YP_004893325.1| - 4.6e-28 98.0 0.1 5.7e-28 97.7 0.1 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain ADK_lid PF05191.9 gi|352682801|ref|YP_004893325.1| - 0.035 13.7 4.2 0.26 10.9 0.1 2.8 3 0 0 3 3 3 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.7 gi|352682801|ref|YP_004893325.1| - 0.047 13.4 5.6 0.83 9.4 0.9 2.6 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|352682801|ref|YP_004893325.1| - 0.05 13.2 2.5 8.7 6.1 0.6 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|352682801|ref|YP_004893325.1| - 0.059 13.0 3.5 5.9 6.6 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|352682801|ref|YP_004893325.1| - 0.06 12.6 2.6 1.2 8.5 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|352682801|ref|YP_004893325.1| - 0.065 12.8 4.1 5.6 6.6 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352682801|ref|YP_004893325.1| - 0.13 11.8 3.3 3.5 7.2 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2 PF09337.5 gi|352682801|ref|YP_004893325.1| - 0.22 10.9 2.1 0.37 10.2 0.1 2.2 2 0 0 2 2 2 0 His(2)-Cys(2) zinc finger zf-C2H2_4 PF13894.1 gi|352682801|ref|YP_004893325.1| - 0.27 11.6 3.2 19 5.8 0.0 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger COX5B PF01215.14 gi|352682801|ref|YP_004893325.1| - 0.27 10.8 2.5 0.36 10.4 0.3 1.9 1 1 1 2 2 2 0 Cytochrome c oxidase subunit Vb zf-ISL3 PF14690.1 gi|352682801|ref|YP_004893325.1| - 0.32 11.0 4.2 3.6 7.6 0.3 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2296 PF10058.4 gi|352682801|ref|YP_004893325.1| - 0.9 9.3 4.3 6.1 6.6 0.7 2.5 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-ribbon_3 PF13248.1 gi|352682801|ref|YP_004893325.1| - 1.5 8.1 10.1 0.71 9.1 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|352682801|ref|YP_004893325.1| - 7.6 5.8 7.6 44 3.3 5.3 2.1 1 1 0 1 1 1 0 Transcription factor zinc-finger FbpA PF05833.6 gi|352682802|ref|YP_004893326.1| - 3.3e-33 114.9 4.4 5.6e-33 114.1 3.1 1.3 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|352682802|ref|YP_004893326.1| - 2.4e-23 81.7 0.0 4.3e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) UPF0449 PF15136.1 gi|352682802|ref|YP_004893326.1| - 0.0021 18.2 4.6 0.027 14.6 0.3 2.5 2 0 0 2 2 2 1 Uncharacterised protein family UPF0449 IncA PF04156.9 gi|352682802|ref|YP_004893326.1| - 0.0027 17.3 7.2 0.13 11.7 0.7 2.2 2 0 0 2 2 2 2 IncA protein MscS_porin PF12795.2 gi|352682802|ref|YP_004893326.1| - 0.004 16.4 7.2 0.34 10.1 0.8 2.2 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain Ax_dynein_light PF10211.4 gi|352682802|ref|YP_004893326.1| - 0.014 15.2 14.1 0.39 10.5 1.6 3.0 3 0 0 3 3 3 0 Axonemal dynein light chain TPR_MLP1_2 PF07926.7 gi|352682802|ref|YP_004893326.1| - 0.017 14.8 10.6 0.097 12.4 1.4 2.4 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF724 PF05266.9 gi|352682802|ref|YP_004893326.1| - 0.019 14.5 10.9 0.02 14.5 2.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Nsp1_C PF05064.8 gi|352682802|ref|YP_004893326.1| - 0.021 14.4 4.1 2.1 7.9 0.2 2.5 2 0 0 2 2 2 0 Nsp1-like C-terminal region Snf7 PF03357.16 gi|352682802|ref|YP_004893326.1| - 0.027 13.8 9.7 0.24 10.7 3.0 2.6 2 0 0 2 2 2 0 Snf7 AAA_13 PF13166.1 gi|352682802|ref|YP_004893326.1| - 0.029 12.8 10.0 0.042 12.3 6.9 1.1 1 0 0 1 1 1 0 AAA domain DUF3441 PF11923.3 gi|352682802|ref|YP_004893326.1| - 0.041 13.4 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3441) BLOC1_2 PF10046.4 gi|352682802|ref|YP_004893326.1| - 0.046 13.8 11.1 0.32 11.1 1.9 3.2 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CDC37_N PF03234.9 gi|352682802|ref|YP_004893326.1| - 0.048 13.9 8.5 0.083 13.2 5.9 1.3 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4254 PF14063.1 gi|352682802|ref|YP_004893326.1| - 0.064 12.8 2.9 0.12 11.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4254) PspA_IM30 PF04012.7 gi|352682802|ref|YP_004893326.1| - 0.068 12.5 13.9 1.2 8.4 9.7 2.3 1 1 0 1 1 1 0 PspA/IM30 family DUF4200 PF13863.1 gi|352682802|ref|YP_004893326.1| - 0.092 12.6 15.7 0.53 10.2 2.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) GAS PF13851.1 gi|352682802|ref|YP_004893326.1| - 0.11 11.6 14.3 0.34 10.0 1.8 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding AAA_27 PF13514.1 gi|352682802|ref|YP_004893326.1| - 0.12 10.0 12.2 0.24 9.0 8.4 1.4 1 1 0 1 1 1 0 AAA domain Syntaxin-6_N PF09177.6 gi|352682802|ref|YP_004893326.1| - 0.13 12.6 10.9 0.34 11.3 0.5 2.9 2 1 1 3 3 3 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.17 gi|352682802|ref|YP_004893326.1| - 0.2 11.7 15.8 1.1 9.2 2.9 2.9 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TPR_6 PF13174.1 gi|352682802|ref|YP_004893326.1| - 0.22 12.0 1.5 6.2 7.5 0.0 3.1 2 1 0 2 2 2 0 Tetratricopeptide repeat Prefoldin_2 PF01920.15 gi|352682802|ref|YP_004893326.1| - 0.3 10.8 13.2 1.1 9.0 1.6 2.5 2 0 0 2 2 2 0 Prefoldin subunit Spc24 PF08286.6 gi|352682802|ref|YP_004893326.1| - 0.33 10.6 8.6 2.2 8.0 0.1 2.8 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 STAT_alpha PF01017.15 gi|352682802|ref|YP_004893326.1| - 0.44 10.2 6.4 0.63 9.7 1.2 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain Paralemmin PF03285.10 gi|352682802|ref|YP_004893326.1| - 0.44 9.9 7.9 0.38 10.1 0.7 2.3 2 0 0 2 2 2 0 Paralemmin AAA_23 PF13476.1 gi|352682802|ref|YP_004893326.1| - 0.53 10.5 7.7 0.99 9.6 5.3 1.4 1 0 0 1 1 1 0 AAA domain DUF4140 PF13600.1 gi|352682802|ref|YP_004893326.1| - 0.54 10.7 8.9 0.99 9.8 1.6 2.8 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Cauli_AT PF03233.8 gi|352682802|ref|YP_004893326.1| - 0.71 9.5 4.8 3.2 7.4 0.7 2.3 2 0 0 2 2 2 0 Aphid transmission protein TMF_DNA_bd PF12329.3 gi|352682802|ref|YP_004893326.1| - 0.8 9.5 14.6 1.4 8.7 3.2 2.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF651 PF04895.7 gi|352682802|ref|YP_004893326.1| - 1.1 8.9 5.6 0.18 11.4 0.4 2.3 3 0 0 3 3 2 0 Archaeal protein of unknown function (DUF651) CENP-Q PF13094.1 gi|352682802|ref|YP_004893326.1| - 1.1 9.3 13.1 4.6 7.2 2.2 2.3 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit WXG100 PF06013.7 gi|352682802|ref|YP_004893326.1| - 1.2 9.1 3.8 45 4.1 0.1 3.5 2 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF2203 PF09969.4 gi|352682802|ref|YP_004893326.1| - 1.4 9.1 5.8 10 6.3 0.3 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) ADIP PF11559.3 gi|352682802|ref|YP_004893326.1| - 1.6 8.6 11.5 0.57 10.0 1.3 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Snapin_Pallidin PF14712.1 gi|352682802|ref|YP_004893326.1| - 2.4 8.4 8.7 11 6.3 1.8 2.5 2 0 0 2 2 2 0 Snapin/Pallidin DUF4337 PF14235.1 gi|352682802|ref|YP_004893326.1| - 2.5 7.9 8.2 7.1 6.4 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Prefoldin PF02996.12 gi|352682802|ref|YP_004893326.1| - 3.2 7.4 12.5 4.6 6.9 1.0 2.8 3 0 0 3 3 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|352682802|ref|YP_004893326.1| - 3.8 7.3 15.4 6.9 6.5 2.7 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Viral_P18 PF04521.8 gi|352682802|ref|YP_004893326.1| - 4 6.9 5.9 1.5 8.3 0.5 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF972 PF06156.8 gi|352682802|ref|YP_004893326.1| - 5.7 7.3 7.0 21 5.5 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF972) MutS_III PF05192.13 gi|352682802|ref|YP_004893326.1| - 6.4 6.5 6.4 29 4.3 4.5 2.0 1 1 0 1 1 1 0 MutS domain III DUF607 PF04678.8 gi|352682802|ref|YP_004893326.1| - 7.2 6.4 9.6 2.4 8.0 1.2 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF607 V_ATPase_I PF01496.14 gi|352682802|ref|YP_004893326.1| - 9.5 3.9 13.0 0.55 8.0 2.7 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family AP_endonuc_2 PF01261.19 gi|352682803|ref|YP_004893327.1| - 9.4e-20 70.8 0.2 1.6e-19 70.0 0.1 1.3 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|352682803|ref|YP_004893327.1| - 0.0005 19.1 0.0 0.00076 18.5 0.0 1.2 1 0 0 1 1 1 1 UV-endonuclease UvdE TruD PF01142.13 gi|352682804|ref|YP_004893328.1| - 3e-66 223.6 0.0 5.9e-66 222.6 0.0 1.4 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF362 PF04015.7 gi|352682805|ref|YP_004893329.1| - 2.4e-08 33.7 0.0 3.3e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) TPR_8 PF13181.1 gi|352682805|ref|YP_004893329.1| - 0.21 11.4 1.5 13 5.8 0.1 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat Ribosomal_L14 PF00238.14 gi|352682806|ref|YP_004893330.1| - 7.5e-37 125.7 0.0 8.7e-37 125.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e AdoHcyase PF05221.12 gi|352682807|ref|YP_004893331.1| - 2.7e-67 226.5 0.0 3.3e-67 226.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|352682807|ref|YP_004893331.1| - 8.1e-52 175.3 0.1 1.3e-51 174.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|352682807|ref|YP_004893331.1| - 2.6e-06 26.7 0.2 8.3e-06 25.0 0.1 1.9 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|352682807|ref|YP_004893331.1| - 6.6e-05 22.3 0.1 0.00015 21.1 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|352682807|ref|YP_004893331.1| - 0.025 14.5 0.1 0.084 12.8 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain Arg_repressor PF01316.16 gi|352682807|ref|YP_004893331.1| - 0.081 12.4 0.0 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain Pyr_redox_2 PF07992.9 gi|352682807|ref|YP_004893331.1| - 0.094 12.5 0.0 0.78 9.5 0.0 2.4 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF4147 PF13660.1 gi|352682808|ref|YP_004893332.1| - 0.035 13.2 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) HTH_23 PF13384.1 gi|352682809|ref|YP_004893333.1| - 0.17 11.5 0.6 6.4 6.5 0.0 2.3 1 1 1 2 2 2 0 Homeodomain-like domain B3_4 PF03483.12 gi|352682810|ref|YP_004893334.1| - 3.9e-23 81.7 0.0 8.1e-23 80.7 0.0 1.5 2 0 0 2 2 2 1 B3/4 domain cobW PF02492.14 gi|352682811|ref|YP_004893335.1| - 0.00013 21.4 0.0 0.0069 15.8 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|352682811|ref|YP_004893335.1| - 0.0013 18.4 0.1 0.0051 16.5 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|352682811|ref|YP_004893335.1| - 0.0032 16.5 0.0 0.0055 15.8 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.18 gi|352682811|ref|YP_004893335.1| - 0.0035 16.7 0.1 0.017 14.5 0.0 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.12 gi|352682811|ref|YP_004893335.1| - 0.004 17.0 0.2 0.0083 15.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 APS_kinase PF01583.15 gi|352682811|ref|YP_004893335.1| - 0.037 13.6 0.0 0.67 9.5 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase ABC_tran PF00005.22 gi|352682811|ref|YP_004893335.1| - 0.038 14.2 0.0 0.059 13.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter LpxK PF02606.9 gi|352682811|ref|YP_004893335.1| - 0.058 12.3 0.1 0.089 11.7 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_10 PF12846.2 gi|352682811|ref|YP_004893335.1| - 0.073 12.4 0.0 0.18 11.1 0.0 1.6 1 1 1 2 2 2 0 AAA-like domain Metallophos_2 PF12850.2 gi|352682812|ref|YP_004893336.1| - 6.4e-07 29.3 0.0 2.3e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|352682812|ref|YP_004893336.1| - 0.042 13.2 0.4 1.1 8.5 0.0 2.3 2 1 0 2 2 2 0 Calcineurin-like phosphoesterase Ribonuc_red_lgC PF02867.10 gi|352682814|ref|YP_004893338.1| - 5e-135 451.1 0.0 6.2e-135 450.7 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|352682814|ref|YP_004893338.1| - 1.4e-12 47.2 0.1 3.1e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|352682814|ref|YP_004893338.1| - 0.00046 20.5 0.0 0.0014 18.9 0.0 1.9 1 0 0 1 1 1 1 ATP cone domain DUF3493 PF11998.3 gi|352682815|ref|YP_004893339.1| - 0.032 14.1 0.8 0.064 13.1 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3493) YrhC PF14143.1 gi|352682815|ref|YP_004893339.1| - 0.15 12.0 0.6 0.15 12.0 0.4 2.2 3 0 0 3 3 3 0 YrhC-like protein 7TMR-DISM_7TM PF07695.6 gi|352682815|ref|YP_004893339.1| - 0.25 11.0 15.7 1.5 8.4 3.9 2.2 1 1 1 2 2 2 0 7TM diverse intracellular signalling ABC2_membrane_3 PF12698.2 gi|352682815|ref|YP_004893339.1| - 5.8 5.8 14.0 6.9 5.5 9.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein tRNA-synt_2b PF00587.20 gi|352682817|ref|YP_004893341.1| - 4.7e-31 107.6 0.0 7.8e-31 106.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|352682817|ref|YP_004893341.1| - 3.1e-21 75.4 4.7 6.1e-21 74.4 3.2 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain BBP1_C PF15272.1 gi|352682817|ref|YP_004893341.1| - 0.0025 17.3 1.2 0.004 16.7 0.8 1.2 1 0 0 1 1 1 1 Spindle pole body component BBP1, C-terminal TMF_TATA_bd PF12325.3 gi|352682817|ref|YP_004893341.1| - 0.014 15.1 2.5 0.026 14.2 1.8 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding ALIX_LYPXL_bnd PF13949.1 gi|352682817|ref|YP_004893341.1| - 0.024 13.6 3.3 0.035 13.0 2.3 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV GAS PF13851.1 gi|352682817|ref|YP_004893341.1| - 0.024 13.8 2.0 0.043 13.0 1.4 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF724 PF05266.9 gi|352682817|ref|YP_004893341.1| - 0.03 13.9 1.5 0.05 13.2 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) IncA PF04156.9 gi|352682817|ref|YP_004893341.1| - 0.035 13.7 1.7 0.053 13.1 1.2 1.2 1 0 0 1 1 1 0 IncA protein CENP-F_leu_zip PF10473.4 gi|352682817|ref|YP_004893341.1| - 0.045 13.6 4.5 0.085 12.7 3.1 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Dor1 PF04124.7 gi|352682817|ref|YP_004893341.1| - 0.13 10.6 1.5 1.3 7.3 0.6 2.0 2 0 0 2 2 2 0 Dor1-like family FlxA PF14282.1 gi|352682817|ref|YP_004893341.1| - 0.16 11.9 2.6 0.25 11.2 1.8 1.2 1 0 0 1 1 1 0 FlxA-like protein DUF342 PF03961.8 gi|352682817|ref|YP_004893341.1| - 0.18 10.2 1.3 0.3 9.4 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Atg14 PF10186.4 gi|352682817|ref|YP_004893341.1| - 0.27 10.1 3.3 0.42 9.5 2.3 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Cep57_MT_bd PF06657.8 gi|352682817|ref|YP_004893341.1| - 0.29 11.1 5.0 0.56 10.1 3.4 1.4 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DivIC PF04977.10 gi|352682817|ref|YP_004893341.1| - 6.2 6.3 7.9 1.9 8.0 1.9 2.3 1 1 1 2 2 2 0 Septum formation initiator AA_kinase PF00696.23 gi|352682819|ref|YP_004893343.1| - 1.9e-22 79.9 0.1 2.7e-22 79.4 0.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family PAS_8 PF13188.1 gi|352682819|ref|YP_004893343.1| - 0.14 12.0 0.0 0.4 10.6 0.0 1.8 2 0 0 2 2 2 0 PAS domain HTH_23 PF13384.1 gi|352682820|ref|YP_004893344.1| - 3.4e-08 32.8 0.1 6.9e-08 31.9 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|352682820|ref|YP_004893344.1| - 4.4e-06 26.0 0.1 4.4e-06 26.0 0.1 2.1 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_7 PF02796.10 gi|352682820|ref|YP_004893344.1| - 5.9e-06 26.0 0.2 1.7e-05 24.5 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|352682820|ref|YP_004893344.1| - 8.8e-06 24.9 0.3 3.4e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_28 PF13518.1 gi|352682820|ref|YP_004893344.1| - 2.3e-05 24.2 0.2 5.1e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|352682820|ref|YP_004893344.1| - 4.6e-05 22.8 0.1 9.3e-05 21.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|352682820|ref|YP_004893344.1| - 0.00019 20.9 0.0 0.00045 19.7 0.0 1.7 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) TrmB PF01978.14 gi|352682820|ref|YP_004893344.1| - 0.0007 19.2 0.7 0.025 14.2 0.0 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.1 gi|352682820|ref|YP_004893344.1| - 0.00088 19.4 0.3 0.0036 17.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|352682820|ref|YP_004893344.1| - 0.0013 18.9 0.0 0.0028 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|352682820|ref|YP_004893344.1| - 0.0022 18.1 0.0 0.0041 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.1 gi|352682820|ref|YP_004893344.1| - 0.0023 17.2 0.4 0.012 14.9 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_ECF PF07638.6 gi|352682820|ref|YP_004893344.1| - 0.0058 16.3 0.2 0.1 12.2 0.0 2.1 2 0 0 2 2 2 1 ECF sigma factor Sigma70_r4 PF04545.11 gi|352682820|ref|YP_004893344.1| - 0.01 15.0 0.0 0.025 13.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|352682820|ref|YP_004893344.1| - 0.011 15.3 0.5 0.072 12.7 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_Tnp_IS1 PF12759.2 gi|352682820|ref|YP_004893344.1| - 0.021 14.2 0.0 0.043 13.2 0.0 1.5 1 0 0 1 1 1 0 InsA C-terminal domain Sigma70_r3 PF04539.11 gi|352682820|ref|YP_004893344.1| - 0.023 14.5 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_22 PF13309.1 gi|352682820|ref|YP_004893344.1| - 0.026 14.2 0.0 0.026 14.2 0.0 2.4 3 0 0 3 3 2 0 HTH domain HTH_36 PF13730.1 gi|352682820|ref|YP_004893344.1| - 0.035 14.2 0.4 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4279 PF14106.1 gi|352682820|ref|YP_004893344.1| - 0.049 13.5 0.0 4.2 7.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4279) HTH_Tnp_1 PF01527.15 gi|352682820|ref|YP_004893344.1| - 0.054 13.4 0.0 0.16 11.9 0.0 1.8 1 1 0 1 1 1 0 Transposase HTH_20 PF12840.2 gi|352682820|ref|YP_004893344.1| - 0.054 13.3 0.0 0.17 11.6 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|352682820|ref|YP_004893344.1| - 0.059 12.9 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_30 PF13556.1 gi|352682820|ref|YP_004893344.1| - 0.063 12.8 0.2 0.26 10.9 0.0 2.0 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain PAX PF00292.13 gi|352682820|ref|YP_004893344.1| - 0.068 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 'Paired box' domain LXG PF04740.7 gi|352682820|ref|YP_004893344.1| - 0.074 12.8 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 LXG domain of WXG superfamily HTH_10 PF04967.7 gi|352682820|ref|YP_004893344.1| - 0.084 12.4 0.0 0.21 11.1 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain UPF0122 PF04297.9 gi|352682820|ref|YP_004893344.1| - 0.1 12.6 0.3 12 5.9 0.0 2.2 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Matrilin_ccoil PF10393.4 gi|352682820|ref|YP_004893344.1| - 0.1 11.9 1.8 0.13 11.6 0.4 1.7 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Trp_repressor PF01371.14 gi|352682820|ref|YP_004893344.1| - 0.15 12.0 0.4 2.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Trp repressor protein MMR_HSR1_C PF08438.5 gi|352682821|ref|YP_004893345.1| - 1.8e-36 124.7 0.0 2.5e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 GTPase of unknown function C-terminal TGS PF02824.16 gi|352682821|ref|YP_004893345.1| - 8.2e-08 31.9 0.0 1.7e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|352682821|ref|YP_004893345.1| - 5e-06 26.4 0.0 9.4e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase LexA_DNA_bind PF01726.11 gi|352682821|ref|YP_004893345.1| - 0.016 14.7 0.1 2.1 7.9 0.0 2.5 2 0 0 2 2 2 0 LexA DNA binding domain SMC_hinge PF06470.8 gi|352682821|ref|YP_004893345.1| - 0.12 12.3 0.3 17 5.4 0.0 2.9 2 1 1 3 3 3 0 SMC proteins Flexible Hinge Domain DUF2964 PF11177.3 gi|352682822|ref|YP_004893346.1| - 0.51 10.3 0.1 0.51 10.3 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF2964) CBS PF00571.23 gi|352682823|ref|YP_004893347.1| - 1.2e-67 223.3 23.5 1.7e-11 43.7 0.0 8.1 8 0 0 8 8 8 8 CBS domain TruB_C PF09142.6 gi|352682823|ref|YP_004893347.1| - 0.021 14.4 2.2 0.93 9.1 0.2 3.3 3 0 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal DUF167 PF02594.11 gi|352682824|ref|YP_004893348.1| - 0.069 13.0 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised ACR, YggU family COG1872 Ribosomal_S11 PF00411.14 gi|352682825|ref|YP_004893349.1| - 3e-39 133.5 0.1 3.9e-39 133.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Drf_FH3 PF06367.11 gi|352682826|ref|YP_004893350.1| - 0.081 12.3 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 Diaphanous FH3 Domain NOG1 PF06858.9 gi|352682827|ref|YP_004893351.1| - 2.5e-21 75.2 0.6 5.1e-21 74.3 0.4 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|352682827|ref|YP_004893351.1| - 1.3e-18 67.0 0.0 2.2e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|352682827|ref|YP_004893351.1| - 5.7e-15 54.9 0.1 8.3e-15 54.3 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|352682827|ref|YP_004893351.1| - 5.6e-09 36.5 0.0 1.1e-08 35.5 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|352682827|ref|YP_004893351.1| - 6.4e-05 22.4 0.2 0.0021 17.5 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.17 gi|352682827|ref|YP_004893351.1| - 0.0004 19.8 0.0 0.00076 18.8 0.0 1.5 1 1 0 1 1 1 1 Ras family PduV-EutP PF10662.4 gi|352682827|ref|YP_004893351.1| - 0.00056 19.4 0.1 0.0014 18.1 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|352682827|ref|YP_004893351.1| - 0.0011 18.5 0.2 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AIG1 PF04548.11 gi|352682827|ref|YP_004893351.1| - 0.0024 17.0 0.1 0.0093 15.0 0.0 1.8 1 1 1 2 2 2 1 AIG1 family DUF258 PF03193.11 gi|352682827|ref|YP_004893351.1| - 0.21 10.7 0.4 1.9 7.6 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|352682827|ref|YP_004893351.1| - 0.51 10.1 2.1 2.2 8.0 0.1 2.2 1 1 1 2 2 2 0 Dynamin family RTC PF01137.16 gi|352682828|ref|YP_004893352.1| - 2.4e-85 284.9 0.1 2.8e-85 284.7 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|352682828|ref|YP_004893352.1| - 6.9e-33 112.7 0.4 1.4e-32 111.7 0.3 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Succ_CoA_lig PF13607.1 gi|352682829|ref|YP_004893353.1| - 3.5e-46 156.2 0.3 1.5e-43 147.7 0.1 3.1 3 0 0 3 3 3 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|352682829|ref|YP_004893353.1| - 7.6e-21 74.4 2.4 3.9e-20 72.1 0.1 2.9 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|352682829|ref|YP_004893353.1| - 6e-10 39.5 0.1 2.2e-09 37.7 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|352682829|ref|YP_004893353.1| - 0.02 14.6 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Flavodoxin_5 PF12724.2 gi|352682829|ref|YP_004893353.1| - 0.034 14.1 0.0 0.077 12.9 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin domain PDH PF02153.12 gi|352682829|ref|YP_004893353.1| - 0.17 10.7 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase SAM_adeno_trans PF01887.11 gi|352682830|ref|YP_004893354.1| - 1.1e-89 299.8 0.0 1.3e-89 299.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase SBBP PF06739.6 gi|352682830|ref|YP_004893354.1| - 0.015 15.0 0.5 0.03 14.1 0.3 1.5 1 0 0 1 1 1 0 Beta-propeller repeat DUF1923 PF09083.5 gi|352682831|ref|YP_004893355.1| - 0.079 12.4 0.1 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1923) PhoU_div PF01865.11 gi|352682832|ref|YP_004893356.1| - 1.3e-15 57.1 9.0 2.9e-15 56.0 6.3 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF47 Prefoldin_3 PF13758.1 gi|352682832|ref|YP_004893356.1| - 0.28 10.9 2.9 21 4.9 0.0 3.2 3 1 0 3 3 3 0 Prefoldin subunit Radical_SAM PF04055.16 gi|352682833|ref|YP_004893357.1| - 6.4e-19 68.7 0.3 1.3e-17 64.4 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.7 gi|352682833|ref|YP_004893357.1| - 0.0027 16.9 0.9 0.0027 16.9 0.6 2.4 2 1 0 2 2 2 1 TFIIB zinc-binding Fer4_12 PF13353.1 gi|352682833|ref|YP_004893357.1| - 0.0029 17.7 0.0 0.0065 16.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|352682833|ref|YP_004893357.1| - 0.0096 15.7 0.1 0.0096 15.7 0.0 2.8 3 0 0 3 3 3 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|352682833|ref|YP_004893357.1| - 0.25 11.0 8.4 0.53 10.0 0.1 3.5 3 0 0 3 3 3 0 Nudix N-terminal GFA PF04828.9 gi|352682833|ref|YP_004893357.1| - 0.37 10.7 0.0 0.37 10.7 0.0 2.7 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.6 gi|352682833|ref|YP_004893357.1| - 0.4 10.3 4.2 0.67 9.6 0.2 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|352682833|ref|YP_004893357.1| - 1.6 8.7 8.4 15 5.6 0.0 3.9 4 0 0 4 4 4 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|352682833|ref|YP_004893357.1| - 6.7 6.2 10.3 14 5.3 0.1 3.5 4 0 0 4 4 4 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|352682833|ref|YP_004893357.1| - 6.9 6.2 12.1 0.86 9.1 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Proteasome PF00227.21 gi|352682834|ref|YP_004893358.1| - 5.1e-52 175.9 0.3 5.8e-52 175.7 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit Endonuclease_5 PF04493.9 gi|352682835|ref|YP_004893359.1| - 5.2e-48 163.1 0.2 9.8e-48 162.2 0.1 1.4 1 1 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|352682835|ref|YP_004893359.1| - 0.012 14.7 0.1 0.026 13.6 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function DUF99 DUF357 PF04010.8 gi|352682836|ref|YP_004893360.1| - 4e-19 68.0 1.0 6.6e-19 67.3 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|352682836|ref|YP_004893360.1| - 1e-06 28.9 0.1 4.4e-06 26.8 0.0 2.1 2 1 0 2 2 2 1 Cytidylyltransferase Formyl_trans_N PF00551.14 gi|352682836|ref|YP_004893360.1| - 0.064 12.7 0.0 0.093 12.2 0.0 1.3 1 0 0 1 1 1 0 Formyl transferase GFO_IDH_MocA PF01408.17 gi|352682836|ref|YP_004893360.1| - 0.078 13.4 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF4550 PF15084.1 gi|352682836|ref|YP_004893360.1| - 0.084 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4550) DUF3173 PF11372.3 gi|352682837|ref|YP_004893361.1| - 0.0061 16.1 2.5 0.0062 16.1 0.7 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF3173) LUC7 PF03194.10 gi|352682837|ref|YP_004893361.1| - 0.0064 16.0 0.6 0.0071 15.9 0.4 1.0 1 0 0 1 1 1 1 LUC7 N_terminus PsbQ PF05757.6 gi|352682837|ref|YP_004893361.1| - 0.041 13.2 0.3 0.052 12.9 0.2 1.1 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) PPR PF01535.15 gi|352682837|ref|YP_004893361.1| - 0.074 13.0 0.2 0.39 10.7 0.0 2.0 2 0 0 2 2 2 0 PPR repeat DUF4363 PF14276.1 gi|352682837|ref|YP_004893361.1| - 0.078 12.6 0.5 0.085 12.5 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) UPF0179 PF03684.8 gi|352682838|ref|YP_004893362.1| - 4.3e-33 113.9 1.8 4.7e-33 113.7 1.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Fer4_21 PF14697.1 gi|352682838|ref|YP_004893362.1| - 0.012 15.4 2.4 0.85 9.5 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|352682838|ref|YP_004893362.1| - 0.38 10.4 6.1 4.3 7.0 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|352682838|ref|YP_004893362.1| - 0.56 10.2 4.5 5.3 7.1 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain RIO1 PF01163.17 gi|352682839|ref|YP_004893363.1| - 1.2e-38 132.3 0.0 2.1e-38 131.6 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|352682839|ref|YP_004893363.1| - 5.7e-20 71.1 1.4 1.2e-19 70.1 1.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|352682839|ref|YP_004893363.1| - 1e-08 35.2 2.5 0.00039 20.2 0.1 2.9 1 1 1 2 2 2 2 Phosphotransferase enzyme family ABC1 PF03109.11 gi|352682839|ref|YP_004893363.1| - 0.0036 17.2 0.0 0.85 9.6 0.0 2.4 2 0 0 2 2 2 2 ABC1 family Kdo PF06293.9 gi|352682839|ref|YP_004893363.1| - 0.007 15.4 0.0 0.07 12.1 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|352682839|ref|YP_004893363.1| - 0.016 14.3 0.1 0.057 12.5 0.0 1.9 1 1 0 1 1 1 0 Protein kinase domain HrcA_DNA-bdg PF03444.10 gi|352682839|ref|YP_004893363.1| - 0.047 13.1 0.4 0.37 10.2 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF460 PF04312.8 gi|352682840|ref|YP_004893364.1| - 1.5e-45 154.1 0.3 3.1e-45 153.1 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) ADIP PF11559.3 gi|352682840|ref|YP_004893364.1| - 0.00026 20.9 4.6 0.00079 19.3 3.2 1.8 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Cep57_MT_bd PF06657.8 gi|352682840|ref|YP_004893364.1| - 0.0012 18.7 4.2 0.016 15.1 2.2 3.0 1 1 1 2 2 2 1 Centrosome microtubule-binding domain of Cep57 Baculo_PEP_C PF04513.7 gi|352682840|ref|YP_004893364.1| - 0.0035 17.1 0.1 0.015 15.1 0.0 2.0 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus CCDC155 PF14662.1 gi|352682840|ref|YP_004893364.1| - 0.013 15.0 2.1 0.013 15.0 1.5 1.8 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 Atg14 PF10186.4 gi|352682840|ref|YP_004893364.1| - 0.49 9.2 7.1 0.3 9.9 2.1 2.2 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 CorA PF01544.13 gi|352682840|ref|YP_004893364.1| - 1.1 8.2 5.7 1.1 8.2 2.3 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Prefoldin_2 PF01920.15 gi|352682840|ref|YP_004893364.1| - 2.7 7.8 15.2 1.9 8.2 0.3 3.4 3 0 0 3 3 3 0 Prefoldin subunit TMF_DNA_bd PF12329.3 gi|352682840|ref|YP_004893364.1| - 2.8 7.8 9.3 13 5.6 4.2 3.0 2 1 0 2 2 1 0 TATA element modulatory factor 1 DNA binding Med4 PF10018.4 gi|352682840|ref|YP_004893364.1| - 2.8 7.3 5.8 2.7 7.3 1.3 2.4 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 TSC22 PF01166.13 gi|352682840|ref|YP_004893364.1| - 5.5 7.0 12.9 5.2 7.1 1.0 3.7 3 0 0 3 3 3 0 TSC-22/dip/bun family DUF4164 PF13747.1 gi|352682840|ref|YP_004893364.1| - 7.4 6.7 12.6 2 8.5 2.3 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) ING PF12998.2 gi|352682840|ref|YP_004893364.1| - 8.2 6.7 9.5 0.98 9.7 1.9 2.7 3 0 0 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding AdoMet_Synthase PF01941.14 gi|352682841|ref|YP_004893365.1| - 7.6e-173 574.5 6.5 8.6e-173 574.3 4.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.17 gi|352682842|ref|YP_004893366.1| - 6.8e-16 57.5 1.1 8e-16 57.3 0.8 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|352682842|ref|YP_004893366.1| - 0.03 14.2 0.1 0.036 13.9 0.1 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain Gemin7 PF11095.3 gi|352682842|ref|YP_004893366.1| - 0.073 12.8 0.0 0.12 12.1 0.0 1.4 2 0 0 2 2 2 0 Gem-associated protein 7 (Gemin7) RNA_pol_N PF01194.12 gi|352682843|ref|YP_004893367.1| - 1.1e-26 92.5 0.1 1.2e-26 92.4 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|352682843|ref|YP_004893367.1| - 0.084 12.9 0.2 0.17 12.0 0.1 1.5 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.14 gi|352682844|ref|YP_004893368.1| - 6.7e-33 113.5 0.1 8.5e-33 113.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|352682845|ref|YP_004893369.1| - 2.2e-24 85.9 0.2 3.2e-24 85.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|352682846|ref|YP_004893370.1| - 2.8e-12 47.1 0.2 3.5e-12 46.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|352682847|ref|YP_004893371.1| - 9.3e-27 93.4 0.0 1.7e-26 92.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|352682847|ref|YP_004893371.1| - 1.7e-06 27.0 0.0 2.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosom_S12_S23 PF00164.20 gi|352682848|ref|YP_004893372.1| - 6.8e-35 119.1 0.6 8e-35 118.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|352682849|ref|YP_004893373.1| - 2e-19 68.9 2.1 2.4e-13 49.4 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|352682849|ref|YP_004893373.1| - 3.8e-12 45.8 3.0 9.9e-12 44.4 0.4 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|352682849|ref|YP_004893373.1| - 2.7e-05 23.7 0.2 0.0057 16.2 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|352682849|ref|YP_004893373.1| - 0.00072 19.1 6.0 0.11 12.1 0.4 3.0 2 1 1 3 3 3 2 KH domain Ribosomal_L7Ae PF01248.21 gi|352682850|ref|YP_004893374.1| - 6.5e-16 57.6 0.0 7.2e-16 57.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|352682851|ref|YP_004893375.1| - 8.9e-47 159.6 0.1 1.1e-46 159.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF211 PF02680.9 gi|352682851|ref|YP_004893375.1| - 0.0071 16.1 2.1 2.1 8.1 0.1 3.1 2 1 0 3 3 3 2 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|352682851|ref|YP_004893375.1| - 0.016 15.3 2.3 0.76 9.9 0.0 3.3 2 1 2 4 4 4 0 Heavy-metal-associated domain RNA_pol_Rpb1_1 PF04997.7 gi|352682852|ref|YP_004893376.1| - 2.4e-88 296.6 0.0 2e-87 293.6 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|352682852|ref|YP_004893376.1| - 8.1e-69 230.8 0.0 1.3e-68 230.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|352682852|ref|YP_004893376.1| - 5.1e-32 110.7 0.0 8.8e-32 110.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|352682852|ref|YP_004893376.1| - 2.1e-26 92.7 0.3 4.4e-26 91.7 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|352682852|ref|YP_004893376.1| - 6.2e-26 90.2 0.0 1.2e-25 89.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 CpXC PF14353.1 gi|352682852|ref|YP_004893376.1| - 0.0034 17.3 2.7 0.19 11.7 0.0 3.6 4 0 0 4 4 4 1 CpXC protein DUF164 PF02591.10 gi|352682852|ref|YP_004893376.1| - 0.012 15.4 0.8 3.5 7.5 0.1 2.7 2 0 0 2 2 2 0 Putative zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|352682852|ref|YP_004893376.1| - 0.05 13.0 9.0 3.4 7.2 0.3 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352682852|ref|YP_004893376.1| - 0.13 11.5 8.7 0.17 11.1 2.3 3.0 2 1 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.7 gi|352682852|ref|YP_004893376.1| - 0.18 11.9 0.6 9.7 6.4 0.0 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ISL3 PF14690.1 gi|352682852|ref|YP_004893376.1| - 0.23 11.4 12.8 0.63 10.1 0.0 4.0 4 0 0 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|352682852|ref|YP_004893376.1| - 0.94 9.3 5.7 22 4.9 3.9 2.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|352682852|ref|YP_004893376.1| - 0.99 9.0 5.1 14 5.4 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|352682852|ref|YP_004893376.1| - 1.1 8.9 9.0 2.9 7.6 0.2 3.2 3 0 0 3 3 3 0 Nudix N-terminal zf-C2HC_2 PF13913.1 gi|352682852|ref|YP_004893376.1| - 2.6 7.8 7.4 5.7 6.7 0.1 3.4 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Zn_Tnp_IS1595 PF12760.2 gi|352682852|ref|YP_004893376.1| - 3.2 7.6 8.3 3.7 7.4 0.1 3.0 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352682852|ref|YP_004893376.1| - 5.7 6.7 6.8 17 5.2 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb2_6 PF00562.23 gi|352682853|ref|YP_004893377.1| - 1.3e-128 429.0 0.0 1.7e-128 428.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|352682853|ref|YP_004893377.1| - 5e-51 172.5 0.0 6.9e-51 172.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.11 gi|352682853|ref|YP_004893377.1| - 2.7e-26 91.0 0.0 5.6e-26 90.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|352682853|ref|YP_004893377.1| - 6.9e-25 87.1 0.0 1.3e-24 86.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.9 gi|352682853|ref|YP_004893377.1| - 2.3e-24 85.8 0.0 4.6e-24 84.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.8 gi|352682853|ref|YP_004893377.1| - 1.2e-20 73.0 1.0 3.5e-20 71.5 0.7 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|352682853|ref|YP_004893377.1| - 5.3e-12 45.5 0.6 1.1e-11 44.5 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.14 gi|352682854|ref|YP_004893378.1| - 2.8e-24 84.4 0.0 3.7e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain ATP-synt_ab PF00006.20 gi|352682855|ref|YP_004893379.1| - 1.7e-79 266.2 0.0 2.3e-79 265.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|352682855|ref|YP_004893379.1| - 4.1e-16 59.4 0.3 6.7e-16 58.7 0.2 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|352682855|ref|YP_004893379.1| - 4.3e-12 46.0 0.2 9.2e-12 45.0 0.1 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|352682855|ref|YP_004893379.1| - 0.11 12.5 0.0 0.39 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF2085 PF09858.4 gi|352682855|ref|YP_004893379.1| - 0.17 11.9 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2085) vATP-synt_E PF01991.13 gi|352682856|ref|YP_004893380.1| - 2e-09 37.0 11.0 3.3e-09 36.2 7.5 1.5 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit TraI_2 PF07514.6 gi|352682856|ref|YP_004893380.1| - 0.0023 16.7 0.4 0.0098 14.6 0.0 1.8 1 1 1 2 2 2 1 Putative helicase HAUS4 PF14735.1 gi|352682856|ref|YP_004893380.1| - 0.025 13.9 3.5 0.035 13.4 2.4 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 4 Propep_M14 PF02244.11 gi|352682856|ref|YP_004893380.1| - 0.054 13.1 0.9 0.17 11.5 0.0 2.2 3 0 0 3 3 3 0 Carboxypeptidase activation peptide E2F_TDP PF02319.15 gi|352682856|ref|YP_004893380.1| - 0.064 12.8 0.5 0.95 9.0 0.0 2.8 3 0 0 3 3 3 0 E2F/DP family winged-helix DNA-binding domain RGS PF00615.14 gi|352682856|ref|YP_004893380.1| - 0.32 11.1 2.9 0.67 10.0 2.0 1.5 2 0 0 2 2 2 0 Regulator of G protein signaling domain Toxin_64 PF15542.1 gi|352682856|ref|YP_004893380.1| - 0.36 11.4 2.9 1.5 9.3 2.0 2.1 1 1 0 1 1 1 0 Putative toxin 64 Fib_alpha PF08702.5 gi|352682856|ref|YP_004893380.1| - 1.7 8.7 7.4 0.31 11.1 0.9 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family ATP-synt_F PF01990.12 gi|352682857|ref|YP_004893381.1| - 2.9e-09 37.1 0.0 3.5e-09 36.9 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF4471 PF14740.1 gi|352682857|ref|YP_004893381.1| - 0.099 11.8 0.1 0.099 11.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) DUF46 PF01864.12 gi|352682858|ref|YP_004893382.1| - 8.2e-38 130.0 6.5 3.7e-37 127.8 4.5 1.8 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|352682858|ref|YP_004893382.1| - 0.0008 19.1 0.3 0.0008 19.1 0.2 2.2 3 0 0 3 3 3 1 Cytidylyltransferase family zf-Di19 PF05605.7 gi|352682859|ref|YP_004893383.1| - 5.1e-10 39.3 2.1 7.8e-06 25.9 0.5 2.3 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|352682859|ref|YP_004893383.1| - 3.2e-05 23.9 1.3 0.0066 16.7 0.1 4.4 4 2 0 4 4 4 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|352682859|ref|YP_004893383.1| - 0.0005 20.2 13.5 0.099 13.0 0.1 3.8 4 1 0 4 4 3 2 C2H2-type zinc finger zf-C3HC4_3 PF13920.1 gi|352682859|ref|YP_004893383.1| - 0.00058 19.4 2.3 0.0042 16.7 0.6 2.4 2 1 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-CHY PF05495.7 gi|352682859|ref|YP_004893383.1| - 0.0056 16.7 4.7 0.011 15.9 1.5 2.3 1 1 2 3 3 3 1 CHY zinc finger zf-C2H2_2 PF12756.2 gi|352682859|ref|YP_004893383.1| - 0.0071 16.4 6.9 6.4 6.9 3.5 3.4 1 1 1 2 2 2 0 C2H2 type zinc-finger (2 copies) DUF2318 PF10080.4 gi|352682859|ref|YP_004893383.1| - 0.0076 15.9 5.7 0.094 12.4 0.2 2.8 1 1 2 3 3 3 1 Predicted membrane protein (DUF2318) zf-HIT PF04438.11 gi|352682859|ref|YP_004893383.1| - 0.012 15.2 11.4 2.7 7.6 0.2 4.1 4 0 0 4 4 4 0 HIT zinc finger DZR PF12773.2 gi|352682859|ref|YP_004893383.1| - 0.014 15.2 3.7 0.53 10.1 2.6 2.4 1 1 0 1 1 1 0 Double zinc ribbon zf-DNA_Pol PF08996.5 gi|352682859|ref|YP_004893383.1| - 0.014 14.7 0.4 0.016 14.5 0.3 1.2 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Gin PF10764.4 gi|352682859|ref|YP_004893383.1| - 0.021 14.5 7.4 0.4 10.4 0.6 3.1 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin zf-C2HC_2 PF13913.1 gi|352682859|ref|YP_004893383.1| - 0.022 14.4 0.6 0.022 14.4 0.4 3.4 4 0 0 4 4 3 0 zinc-finger of a C2HC-type zf-met PF12874.2 gi|352682859|ref|YP_004893383.1| - 0.039 14.1 6.4 3.6 7.9 0.0 3.9 3 1 0 3 3 3 0 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.1 gi|352682859|ref|YP_004893383.1| - 0.053 13.4 0.2 0.053 13.4 0.1 4.0 5 0 0 5 5 4 0 C2H2-type zinc finger DUF1677 PF07911.8 gi|352682859|ref|YP_004893383.1| - 0.053 13.7 0.9 0.053 13.7 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1677) zf-C2H2_jaz PF12171.3 gi|352682859|ref|YP_004893383.1| - 0.082 13.0 0.0 0.082 13.0 0.0 3.7 4 1 0 4 4 3 0 Zinc-finger double-stranded RNA-binding OrfB_Zn_ribbon PF07282.6 gi|352682859|ref|YP_004893383.1| - 0.092 12.4 5.3 3.4 7.3 0.1 2.7 2 1 0 2 2 2 0 Putative transposase DNA-binding domain LIM PF00412.17 gi|352682859|ref|YP_004893383.1| - 0.13 12.3 2.5 14 5.8 0.0 3.1 2 1 0 2 2 2 0 LIM domain Zn_Tnp_IS1595 PF12760.2 gi|352682859|ref|YP_004893383.1| - 0.13 12.1 6.3 2.4 8.0 0.1 2.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain RNHCP PF12647.2 gi|352682859|ref|YP_004893383.1| - 0.16 11.7 3.1 9 6.2 0.1 3.1 3 0 0 3 3 3 0 RNHCP domain DUF2175 PF09943.4 gi|352682859|ref|YP_004893383.1| - 0.16 12.0 0.2 0.16 12.0 0.1 3.1 4 0 0 4 4 3 0 Uncharacterized protein conserved in archaea (DUF2175) Mut7-C PF01927.11 gi|352682859|ref|YP_004893383.1| - 0.22 11.4 1.8 0.34 10.8 1.2 1.4 1 1 0 1 1 1 0 Mut7-C RNAse domain DUF3279 PF11682.3 gi|352682859|ref|YP_004893383.1| - 0.24 10.9 2.2 0.46 10.0 1.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3279) zf-H2C2_2 PF13465.1 gi|352682859|ref|YP_004893383.1| - 0.27 11.6 0.1 0.27 11.6 0.1 4.1 5 0 0 5 5 4 0 Zinc-finger double domain RRN7 PF11781.3 gi|352682859|ref|YP_004893383.1| - 0.32 10.5 6.6 12 5.5 0.0 3.6 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 Elf1 PF05129.8 gi|352682859|ref|YP_004893383.1| - 0.43 10.3 8.0 0.18 11.5 0.8 2.5 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Desulfoferrod_N PF06397.7 gi|352682859|ref|YP_004893383.1| - 0.67 9.3 0.0 0.67 9.3 0.0 3.3 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain DUF3505 PF12013.3 gi|352682859|ref|YP_004893383.1| - 0.73 10.1 3.8 2.7 8.2 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3505) Endonuclease_7 PF02945.10 gi|352682859|ref|YP_004893383.1| - 1.6 8.5 8.6 0.68 9.6 3.4 2.2 1 1 2 3 3 3 0 Recombination endonuclease VII HNH PF01844.18 gi|352682859|ref|YP_004893383.1| - 1.8 8.5 11.6 9.8 6.1 0.1 3.7 4 0 0 4 4 4 0 HNH endonuclease zf-TFIIIC PF12660.2 gi|352682859|ref|YP_004893383.1| - 1.8 8.4 6.0 16 5.5 0.1 3.3 2 1 2 4 4 4 0 Putative zinc-finger of transcription factor IIIC complex BIR PF00653.16 gi|352682859|ref|YP_004893383.1| - 2.1 8.8 6.8 15 6.1 0.4 3.0 1 1 2 3 3 3 0 Inhibitor of Apoptosis domain C1_2 PF03107.11 gi|352682859|ref|YP_004893383.1| - 2.2 8.4 13.7 3.1 8.0 0.1 4.0 4 0 0 4 4 4 0 C1 domain DUF2256 PF10013.4 gi|352682859|ref|YP_004893383.1| - 2.7 7.8 7.2 23 4.8 0.1 3.5 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2256) C1_1 PF00130.17 gi|352682859|ref|YP_004893383.1| - 2.7 7.7 7.1 17 5.2 0.0 3.1 2 1 2 4 4 4 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_5 PF14634.1 gi|352682859|ref|YP_004893383.1| - 3.2 7.5 6.8 9.1 6.1 0.4 3.0 2 1 1 3 3 3 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 gi|352682859|ref|YP_004893383.1| - 4.3 6.9 10.3 16 5.1 0.9 3.6 4 0 0 4 4 4 0 zinc-ribbon domain zf-UBP PF02148.14 gi|352682859|ref|YP_004893383.1| - 6.7 6.9 9.9 62 3.8 6.9 2.6 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-trcl PF13451.1 gi|352682859|ref|YP_004893383.1| - 8.1 6.1 8.6 3 7.5 0.1 2.6 3 1 0 3 3 2 0 Probable zinc-binding domain DUF4428 PF14471.1 gi|352682859|ref|YP_004893383.1| - 9.7 6.0 11.6 5.3 6.8 2.1 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4428) PRANC PF09372.5 gi|352682860|ref|YP_004893384.1| - 0.012 15.5 0.2 0.018 15.0 0.2 1.2 1 0 0 1 1 1 0 PRANC domain Radical_SAM PF04055.16 gi|352682861|ref|YP_004893385.1| - 2.9e-15 56.8 0.0 1.1e-14 54.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Rad51 PF08423.6 gi|352682863|ref|YP_004893387.1| - 2.2e-96 321.6 0.0 2.7e-96 321.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|352682863|ref|YP_004893387.1| - 1.8e-14 53.5 0.1 3.2e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|352682863|ref|YP_004893387.1| - 5.7e-12 45.2 0.0 1.2e-11 44.1 0.0 1.6 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|352682863|ref|YP_004893387.1| - 2.8e-11 43.0 0.1 4.6e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|352682863|ref|YP_004893387.1| - 2.9e-10 40.1 3.1 6.1e-09 35.9 0.8 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|352682863|ref|YP_004893387.1| - 0.00014 22.0 0.0 0.00025 21.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|352682863|ref|YP_004893387.1| - 0.012 14.5 1.3 2.2 7.0 0.9 2.6 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_18 PF13238.1 gi|352682863|ref|YP_004893387.1| - 0.012 15.9 0.0 0.057 13.7 0.0 2.2 2 1 0 2 2 2 0 AAA domain BAF PF02961.9 gi|352682863|ref|YP_004893387.1| - 0.024 14.9 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor UPF0079 PF02367.12 gi|352682863|ref|YP_004893387.1| - 0.051 13.2 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|352682863|ref|YP_004893387.1| - 0.12 12.7 0.0 0.39 11.0 0.0 1.8 1 1 1 2 2 2 0 ABC transporter ATP_bind_1 PF03029.12 gi|352682863|ref|YP_004893387.1| - 0.15 11.5 0.1 0.32 10.4 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DNA_pol_lambd_f PF10391.4 gi|352682863|ref|YP_004893387.1| - 0.21 11.1 0.6 2.1 7.9 0.0 2.5 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda Met_10 PF02475.11 gi|352682864|ref|YP_004893388.1| - 7.7e-56 188.8 0.0 9.7e-56 188.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Fibrillarin PF01269.12 gi|352682864|ref|YP_004893388.1| - 0.0025 16.7 0.0 0.0042 16.0 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin tRNA_U5-meth_tr PF05958.6 gi|352682864|ref|YP_004893388.1| - 0.009 14.7 0.0 0.013 14.1 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase MTS PF05175.9 gi|352682864|ref|YP_004893388.1| - 0.0097 15.2 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|352682864|ref|YP_004893388.1| - 0.012 14.7 0.0 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase PrmA PF06325.8 gi|352682864|ref|YP_004893388.1| - 0.054 12.6 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|352682864|ref|YP_004893388.1| - 0.071 13.6 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF2153 PF09921.4 gi|352682865|ref|YP_004893389.1| - 2.4e-43 146.7 0.0 2.8e-43 146.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF1912 PF08930.5 gi|352682865|ref|YP_004893389.1| - 0.053 13.5 0.4 6.6 6.9 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1912) SNARE PF05739.14 gi|352682865|ref|YP_004893389.1| - 0.37 10.4 2.1 0.71 9.6 0.3 2.1 2 0 0 2 2 2 0 SNARE domain DUF2070 PF09843.4 gi|352682866|ref|YP_004893390.1| - 5.7e-37 126.9 0.0 9e-37 126.2 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) UDG PF03167.14 gi|352682868|ref|YP_004893392.1| - 2.8e-36 124.2 0.0 3.8e-36 123.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily CorA PF01544.13 gi|352682869|ref|YP_004893393.1| - 0.00025 20.2 3.4 0.00028 20.0 2.4 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Herpes_U30 PF04523.8 gi|352682869|ref|YP_004893393.1| - 0.036 11.5 0.7 0.043 11.2 0.5 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 SRP54_N PF02881.14 gi|352682869|ref|YP_004893393.1| - 0.12 12.4 2.7 0.2 11.7 1.3 1.8 1 1 0 1 1 1 0 SRP54-type protein, helical bundle domain IncA PF04156.9 gi|352682869|ref|YP_004893393.1| - 0.17 11.4 7.0 0.25 10.8 4.9 1.3 1 0 0 1 1 1 0 IncA protein APG6 PF04111.7 gi|352682869|ref|YP_004893393.1| - 0.23 10.4 6.0 0.37 9.7 4.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4071 PF13281.1 gi|352682869|ref|YP_004893393.1| - 0.3 9.8 4.9 0.5 9.1 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4071) Exonuc_VII_S PF02609.11 gi|352682869|ref|YP_004893393.1| - 1.3 8.8 6.0 0.41 10.4 0.9 2.6 2 1 1 3 3 3 0 Exonuclease VII small subunit FlaC_arch PF05377.6 gi|352682869|ref|YP_004893393.1| - 5.8 6.8 6.2 0.72 9.7 0.6 2.3 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF3797 PF12677.2 gi|352682870|ref|YP_004893394.1| - 0.00063 19.3 5.0 0.0044 16.5 0.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3797) Elf1 PF05129.8 gi|352682870|ref|YP_004893394.1| - 0.0021 17.7 0.1 0.0027 17.3 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like A2L_zn_ribbon PF08792.5 gi|352682870|ref|YP_004893394.1| - 0.07 12.6 1.2 1.3 8.5 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain CK_II_beta PF01214.13 gi|352682870|ref|YP_004893394.1| - 0.093 12.2 0.1 0.1 12.0 0.1 1.1 1 0 0 1 1 1 0 Casein kinase II regulatory subunit zf-trcl PF13451.1 gi|352682870|ref|YP_004893394.1| - 0.26 10.9 1.5 15 5.2 0.0 2.5 3 0 0 3 3 3 0 Probable zinc-binding domain Cys_rich_KTR PF14205.1 gi|352682870|ref|YP_004893394.1| - 0.35 10.3 4.9 1.1 8.7 3.4 1.8 1 1 0 1 1 1 0 Cysteine-rich KTR RRN7 PF11781.3 gi|352682870|ref|YP_004893394.1| - 6.9 6.2 7.8 11 5.5 0.1 3.0 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 RimK PF08443.6 gi|352682871|ref|YP_004893395.1| - 7.7e-44 149.4 0.0 9.8e-44 149.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|352682871|ref|YP_004893395.1| - 4e-14 52.1 0.0 5.7e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|352682871|ref|YP_004893395.1| - 1.2e-11 44.7 0.0 1.6e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|352682871|ref|YP_004893395.1| - 2.2e-07 30.8 0.0 3.7e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|352682871|ref|YP_004893395.1| - 0.00034 19.4 0.0 0.0013 17.5 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon TTL PF03133.10 gi|352682871|ref|YP_004893395.1| - 0.11 11.4 0.0 0.3 9.9 0.0 1.6 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family zinc_ribbon_2 PF13240.1 gi|352682874|ref|YP_004893398.1| - 5.5e-05 22.5 1.0 0.086 12.3 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352682874|ref|YP_004893398.1| - 0.0003 19.9 3.4 0.0031 16.6 2.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|352682874|ref|YP_004893398.1| - 0.0021 17.8 2.2 0.73 9.6 0.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zf-TFIIB PF13453.1 gi|352682874|ref|YP_004893398.1| - 0.0024 17.0 0.3 0.44 9.7 0.0 2.2 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|352682874|ref|YP_004893398.1| - 0.0036 17.2 0.3 1 9.4 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_KTR PF14205.1 gi|352682874|ref|YP_004893398.1| - 0.0053 16.1 0.6 1.3 8.5 0.1 2.1 2 0 0 2 2 2 1 Cysteine-rich KTR DZR PF12773.2 gi|352682874|ref|YP_004893398.1| - 0.011 15.5 1.3 0.081 12.7 0.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|352682874|ref|YP_004893398.1| - 0.013 15.7 0.5 1.3 9.3 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-ZPR1 PF03367.8 gi|352682874|ref|YP_004893398.1| - 0.015 14.4 0.2 0.016 14.3 0.1 1.0 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zf-C4_Topoisom PF01396.14 gi|352682874|ref|YP_004893398.1| - 0.017 14.6 2.2 0.25 10.8 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|352682874|ref|YP_004893398.1| - 0.02 14.8 0.3 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|352682874|ref|YP_004893398.1| - 0.022 14.4 1.9 1.3 8.8 0.2 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.1 gi|352682874|ref|YP_004893398.1| - 0.023 14.9 0.3 0.036 14.3 0.2 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|352682874|ref|YP_004893398.1| - 0.024 14.1 0.5 0.73 9.3 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|352682874|ref|YP_004893398.1| - 0.026 14.4 1.1 0.085 12.7 0.8 1.7 1 1 1 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|352682874|ref|YP_004893398.1| - 0.027 13.8 1.1 3.6 6.9 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|352682874|ref|YP_004893398.1| - 0.036 14.0 0.4 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.7 gi|352682874|ref|YP_004893398.1| - 0.037 13.8 0.9 0.17 11.6 0.7 1.8 1 1 1 2 2 2 0 zinc-ribbons Arc_trans_TRASH PF08394.5 gi|352682874|ref|YP_004893398.1| - 0.039 14.1 0.2 5.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Archaeal TRASH domain YdjO PF14169.1 gi|352682874|ref|YP_004893398.1| - 0.054 12.9 1.0 0.38 10.2 0.2 2.0 2 0 0 2 2 2 0 Cold-inducible protein YdjO DUF329 PF03884.9 gi|352682874|ref|YP_004893398.1| - 0.056 13.0 0.4 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-RING_3 PF14369.1 gi|352682874|ref|YP_004893398.1| - 0.058 13.3 0.3 12 6.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger Ogr_Delta PF04606.7 gi|352682874|ref|YP_004893398.1| - 0.06 13.0 2.3 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Terminase_GpA PF05876.7 gi|352682874|ref|YP_004893398.1| - 0.064 11.6 0.0 0.076 11.3 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) OrfB_Zn_ribbon PF07282.6 gi|352682874|ref|YP_004893398.1| - 0.065 12.8 0.5 0.24 11.1 0.3 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Sgf11 PF08209.6 gi|352682874|ref|YP_004893398.1| - 0.068 12.5 1.5 4.6 6.6 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.1 gi|352682874|ref|YP_004893398.1| - 0.12 12.0 0.6 3.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.4 gi|352682874|ref|YP_004893398.1| - 0.16 11.6 3.9 5.5 6.7 0.5 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-FPG_IleRS PF06827.9 gi|352682874|ref|YP_004893398.1| - 0.25 11.0 1.4 14 5.4 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_4 PF13717.1 gi|352682874|ref|YP_004893398.1| - 0.32 10.7 3.0 5.5 6.7 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|352682874|ref|YP_004893398.1| - 0.34 10.5 3.1 1.6 8.5 2.2 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_5 PF13719.1 gi|352682874|ref|YP_004893398.1| - 0.36 10.4 3.0 6.3 6.4 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|352682874|ref|YP_004893398.1| - 0.83 9.3 3.0 17 5.2 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-RING_6 PF14835.1 gi|352682874|ref|YP_004893398.1| - 0.88 9.4 3.1 5.8 6.7 0.7 2.0 2 0 0 2 2 2 0 zf-RING of BARD1-type protein Zn_Tnp_IS1595 PF12760.2 gi|352682874|ref|YP_004893398.1| - 1.5 8.6 4.3 5.5 6.8 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1936 PF09151.5 gi|352682874|ref|YP_004893398.1| - 1.5 8.3 5.9 6.9 6.2 0.2 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) DUF1610 PF07754.6 gi|352682874|ref|YP_004893398.1| - 7.1 6.8 9.5 4.4 7.4 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) MarR_2 PF12802.2 gi|352682877|ref|YP_004893401.1| - 5.3e-11 42.0 0.2 8.6e-11 41.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|352682877|ref|YP_004893401.1| - 3.5e-09 36.0 0.0 5.3e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|352682877|ref|YP_004893401.1| - 6e-07 29.1 0.1 1.5e-06 27.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|352682877|ref|YP_004893401.1| - 1.4e-06 27.9 0.1 2.1e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|352682877|ref|YP_004893401.1| - 1.7e-06 27.2 0.0 3.7e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|352682877|ref|YP_004893401.1| - 5.1e-06 26.7 0.1 8.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|352682877|ref|YP_004893401.1| - 1.2e-05 24.8 0.0 1.8e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|352682877|ref|YP_004893401.1| - 3.5e-05 23.6 0.0 5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|352682877|ref|YP_004893401.1| - 4.7e-05 23.4 0.0 6.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor CcmD PF04995.9 gi|352682877|ref|YP_004893401.1| - 0.00016 21.3 0.3 0.00016 21.3 0.2 1.9 2 1 0 2 2 2 1 Heme exporter protein D (CcmD) GntR PF00392.16 gi|352682877|ref|YP_004893401.1| - 0.00078 18.8 0.2 0.0012 18.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PaaX PF07848.7 gi|352682877|ref|YP_004893401.1| - 0.0012 18.7 0.2 0.0019 18.1 0.1 1.2 1 0 0 1 1 1 1 PaaX-like protein HTH_36 PF13730.1 gi|352682877|ref|YP_004893401.1| - 0.0017 18.4 0.1 0.0069 16.4 0.0 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|352682877|ref|YP_004893401.1| - 0.0019 17.8 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|352682877|ref|YP_004893401.1| - 0.0045 16.9 0.3 0.0079 16.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|352682877|ref|YP_004893401.1| - 0.0045 17.1 0.2 0.0073 16.4 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn helix DUF2250 PF10007.4 gi|352682877|ref|YP_004893401.1| - 0.007 16.2 0.0 0.01 15.7 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|352682877|ref|YP_004893401.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit DUF977 PF06163.6 gi|352682877|ref|YP_004893401.1| - 0.012 15.3 0.1 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_23 PF13384.1 gi|352682877|ref|YP_004893401.1| - 0.018 14.6 0.1 0.031 13.9 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain RPA_C PF08784.6 gi|352682877|ref|YP_004893401.1| - 0.028 14.8 0.0 0.044 14.2 0.0 1.3 1 1 0 1 1 1 0 Replication protein A C terminal Rrf2 PF02082.15 gi|352682877|ref|YP_004893401.1| - 0.036 14.1 0.0 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_38 PF13936.1 gi|352682877|ref|YP_004893401.1| - 0.037 13.5 0.0 0.09 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3253 PF11625.3 gi|352682877|ref|YP_004893401.1| - 0.078 12.8 0.2 0.15 11.9 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3253) HTH_AsnC-type PF13404.1 gi|352682877|ref|YP_004893401.1| - 0.097 12.2 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|352682877|ref|YP_004893401.1| - 0.11 12.2 0.1 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|352682877|ref|YP_004893401.1| - 0.13 11.3 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit ASCH PF04266.9 gi|352682879|ref|YP_004893403.1| - 2.6e-10 40.6 0.0 3.1e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 ASCH domain CUE PF02845.11 gi|352682879|ref|YP_004893403.1| - 0.097 12.1 0.1 0.26 10.8 0.0 1.8 2 0 0 2 2 2 0 CUE domain Peptidase_M24 PF00557.19 gi|352682880|ref|YP_004893404.1| - 3.8e-55 186.6 0.1 4.8e-55 186.3 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|352682880|ref|YP_004893404.1| - 2.3e-07 31.3 0.0 6.2e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Methyltransf_26 PF13659.1 gi|352682881|ref|YP_004893405.1| - 4.8e-11 42.7 0.0 3.7e-10 39.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|352682881|ref|YP_004893405.1| - 5.1e-08 32.5 0.0 6.6e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|352682881|ref|YP_004893405.1| - 0.0001 22.8 0.0 0.00017 22.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|352682881|ref|YP_004893405.1| - 0.0015 17.5 0.0 0.0022 16.9 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase MTS PF05175.9 gi|352682881|ref|YP_004893405.1| - 0.0084 15.5 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_30 PF05430.6 gi|352682881|ref|YP_004893405.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase DUF4056 PF13265.1 gi|352682882|ref|YP_004893406.1| - 0.11 11.4 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4056) HD PF01966.17 gi|352682883|ref|YP_004893407.1| - 1e-11 44.9 0.3 3.1e-11 43.3 0.2 1.8 1 0 0 1 1 1 1 HD domain His_Phos_1 PF00300.17 gi|352682883|ref|YP_004893407.1| - 0.099 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) Pyr_redox_2 PF07992.9 gi|352682884|ref|YP_004893408.1| - 1.6e-05 24.9 0.0 2.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|352682884|ref|YP_004893408.1| - 0.012 14.7 3.0 0.027 13.5 0.3 2.1 2 0 0 2 2 2 0 FAD binding domain NAD_binding_8 PF13450.1 gi|352682884|ref|YP_004893408.1| - 0.017 15.1 0.2 0.042 13.8 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|352682884|ref|YP_004893408.1| - 0.042 12.9 0.2 0.092 11.8 0.0 1.6 2 0 0 2 2 2 0 Thi4 family HI0933_like PF03486.9 gi|352682884|ref|YP_004893408.1| - 0.12 10.7 0.2 0.23 9.8 0.1 1.4 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_9 PF13454.1 gi|352682884|ref|YP_004893408.1| - 0.13 12.0 0.1 0.39 10.4 0.0 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding SE PF08491.5 gi|352682884|ref|YP_004893408.1| - 0.13 11.0 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Peptidase_S24 PF00717.18 gi|352682885|ref|YP_004893409.1| - 9.4e-08 31.5 0.0 1.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Cpn60_TCP1 PF00118.19 gi|352682886|ref|YP_004893410.1| - 1.7e-166 554.6 5.1 1.9e-166 554.4 3.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SHOCT PF09851.4 gi|352682886|ref|YP_004893410.1| - 0.0024 17.3 0.0 0.0091 15.4 0.0 2.1 1 0 0 1 1 1 1 Short C-terminal domain RNA_pol_Rpb6 PF01192.17 gi|352682887|ref|YP_004893411.1| - 6.3e-16 57.8 0.1 1.3e-15 56.8 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb6 PcrB PF01884.12 gi|352682889|ref|YP_004893413.1| - 5.6e-59 199.1 0.1 6.8e-59 198.9 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|352682889|ref|YP_004893413.1| - 0.00017 20.9 0.0 0.00033 20.0 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Adenine_deam_C PF13382.1 gi|352682889|ref|YP_004893413.1| - 0.021 14.0 0.0 0.036 13.2 0.0 1.4 1 0 0 1 1 1 0 Adenine deaminase C-terminal domain GARS_N PF02844.10 gi|352682889|ref|YP_004893413.1| - 0.1 13.0 0.2 0.54 10.7 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Elf1 PF05129.8 gi|352682890|ref|YP_004893414.1| - 2e-15 56.2 0.1 2.3e-15 56.0 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|352682890|ref|YP_004893414.1| - 4.4e-05 23.6 0.3 6.4e-05 23.1 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|352682890|ref|YP_004893414.1| - 0.00021 20.5 2.1 0.00039 19.6 1.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|352682890|ref|YP_004893414.1| - 0.0095 15.8 0.2 0.014 15.2 0.1 1.2 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) PhnA_Zn_Ribbon PF08274.7 gi|352682890|ref|YP_004893414.1| - 0.015 15.1 0.7 0.072 12.8 0.0 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin PF00301.15 gi|352682890|ref|YP_004893414.1| - 0.027 14.3 0.4 0.18 11.7 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin eIF-5_eIF-2B PF01873.12 gi|352682890|ref|YP_004893414.1| - 0.035 13.7 0.1 0.041 13.5 0.1 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Zn_Tnp_IS1595 PF12760.2 gi|352682890|ref|YP_004893414.1| - 0.048 13.4 2.6 0.12 12.2 1.6 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|352682890|ref|YP_004893414.1| - 0.049 13.7 0.7 0.049 13.7 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Gin PF10764.4 gi|352682890|ref|YP_004893414.1| - 0.058 13.1 1.7 0.078 12.7 0.3 1.9 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin OrfB_Zn_ribbon PF07282.6 gi|352682890|ref|YP_004893414.1| - 0.071 12.7 0.4 0.12 12.1 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.1 gi|352682890|ref|YP_004893414.1| - 0.074 12.2 1.2 0.12 11.6 0.8 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger GATA PF00320.22 gi|352682890|ref|YP_004893414.1| - 0.084 12.2 0.1 0.17 11.2 0.1 1.5 1 1 0 1 1 1 0 GATA zinc finger zf-RING_3 PF14369.1 gi|352682890|ref|YP_004893414.1| - 0.1 12.5 1.7 3.6 7.6 0.2 2.3 1 1 1 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|352682890|ref|YP_004893414.1| - 0.11 11.7 6.0 1.3 8.3 4.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|352682890|ref|YP_004893414.1| - 0.12 12.6 2.6 0.91 9.7 1.8 2.1 1 1 0 1 1 1 0 Ribosomal L32p protein family DUF164 PF02591.10 gi|352682890|ref|YP_004893414.1| - 0.13 12.1 2.3 2.8 7.8 0.1 2.2 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-ISL3 PF14690.1 gi|352682890|ref|YP_004893414.1| - 0.13 12.2 2.3 0.16 11.9 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|352682890|ref|YP_004893414.1| - 0.2 11.6 2.0 0.74 9.8 1.3 1.9 1 1 1 2 2 2 0 Zinc ribbon domain DUF2296 PF10058.4 gi|352682890|ref|YP_004893414.1| - 0.21 11.3 2.2 2.3 8.0 0.1 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DZR PF12773.2 gi|352682890|ref|YP_004893414.1| - 0.34 10.7 1.9 0.78 9.6 1.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|352682890|ref|YP_004893414.1| - 0.69 10.2 2.7 2 8.7 1.7 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.1 gi|352682890|ref|YP_004893414.1| - 4.1 7.0 6.2 31 4.2 4.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Inositol_P PF00459.20 gi|352682892|ref|YP_004893416.1| - 3.1e-18 66.0 0.0 4.3e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|352682892|ref|YP_004893416.1| - 0.0005 19.0 0.0 0.0007 18.5 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase SWIM PF04434.12 gi|352682893|ref|YP_004893417.1| - 0.0011 18.3 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger S6PP_C PF08472.5 gi|352682894|ref|YP_004893418.1| - 0.12 12.0 0.0 0.44 10.1 0.0 1.8 2 0 0 2 2 2 0 Sucrose-6-phosphate phosphohydrolase C-terminal Sec61_beta PF03911.11 gi|352682895|ref|YP_004893419.1| - 2.2e-12 46.5 1.0 2.7e-12 46.2 0.7 1.1 1 0 0 1 1 1 1 Sec61beta family TatD_DNase PF01026.16 gi|352682896|ref|YP_004893420.1| - 3e-25 88.8 0.0 3.5e-25 88.6 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DegT_DnrJ_EryC1 PF01041.12 gi|352682897|ref|YP_004893421.1| - 6.1e-113 377.5 0.0 8.6e-113 377.0 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|352682897|ref|YP_004893421.1| - 2.5e-07 29.7 0.1 3.7e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|352682897|ref|YP_004893421.1| - 4.6e-05 22.7 0.0 6.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|352682897|ref|YP_004893421.1| - 6.4e-05 21.4 0.1 8.6e-05 20.9 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ALS_ss_C PF10369.4 gi|352682897|ref|YP_004893421.1| - 0.007 16.0 0.1 0.05 13.3 0.0 2.2 2 0 0 2 2 2 1 Small subunit of acetolactate synthase DUF59 PF01883.14 gi|352682898|ref|YP_004893422.1| - 8.4e-13 48.1 0.4 4.9e-12 45.6 0.3 1.9 1 1 1 2 2 2 2 Domain of unknown function DUF59 Flavin_Reduct PF01613.13 gi|352682899|ref|YP_004893423.1| - 8.8e-24 84.1 0.0 1.1e-23 83.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Pribosyltran PF00156.22 gi|352682900|ref|YP_004893424.1| - 1.5e-18 66.7 0.2 3.3e-18 65.6 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyltran PF00156.22 gi|352682902|ref|YP_004893426.1| - 5.4e-14 51.9 0.4 1e-13 51.0 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|352682902|ref|YP_004893426.1| - 8.7e-08 31.9 0.3 5.5e-07 29.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|352682902|ref|YP_004893426.1| - 0.00048 20.2 0.2 0.0073 16.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|352682902|ref|YP_004893426.1| - 0.0061 16.5 0.0 0.022 14.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|352682902|ref|YP_004893426.1| - 0.056 12.9 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 PALP PF00291.20 gi|352682903|ref|YP_004893427.1| - 1.8e-06 27.4 1.5 4e-05 22.9 0.1 2.5 1 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme PDH PF02153.12 gi|352682904|ref|YP_004893428.1| - 2e-11 43.2 0.0 2.4e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|352682904|ref|YP_004893428.1| - 1.4e-06 28.5 0.6 0.00016 21.9 0.5 2.7 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|352682904|ref|YP_004893428.1| - 0.025 13.7 0.1 0.055 12.6 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|352682904|ref|YP_004893428.1| - 0.033 14.0 0.1 0.11 12.3 0.0 1.9 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.15 gi|352682904|ref|YP_004893428.1| - 0.036 13.9 0.1 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Rossmann-like PF10727.4 gi|352682904|ref|YP_004893428.1| - 0.077 12.7 0.4 0.55 9.9 0.2 2.4 1 1 0 1 1 1 0 Rossmann-like domain P5CR_dimer PF14748.1 gi|352682905|ref|YP_004893429.1| - 9.9e-17 60.8 0.0 1.5e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|352682905|ref|YP_004893429.1| - 1.7e-11 44.3 0.1 9.1e-11 42.0 0.0 2.2 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|352682905|ref|YP_004893429.1| - 2.7e-08 33.8 0.0 9.7e-08 32.0 0.0 1.9 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|352682905|ref|YP_004893429.1| - 2.8e-06 26.5 0.0 5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|352682905|ref|YP_004893429.1| - 3.1e-06 26.6 0.0 5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|352682905|ref|YP_004893429.1| - 0.00015 21.2 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.4 gi|352682905|ref|YP_004893429.1| - 0.0042 16.8 0.0 0.0084 15.8 0.0 1.4 1 0 0 1 1 1 1 Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|352682905|ref|YP_004893429.1| - 0.026 14.2 0.1 0.42 10.3 0.1 2.5 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|352682905|ref|YP_004893429.1| - 0.062 12.1 0.0 0.17 10.7 0.0 1.7 1 1 1 2 2 2 0 Prephenate dehydrogenase NAD_binding_10 PF13460.1 gi|352682905|ref|YP_004893429.1| - 0.063 13.2 0.0 0.099 12.6 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding ADH_N PF08240.7 gi|352682906|ref|YP_004893430.1| - 9.4e-31 105.8 0.3 1.8e-30 104.9 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|352682906|ref|YP_004893430.1| - 1.3e-21 76.4 0.0 1.9e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|352682906|ref|YP_004893430.1| - 6.6e-09 36.7 0.2 1.7e-08 35.3 0.0 1.7 1 1 1 2 2 2 1 Zinc-binding dehydrogenase NmrA PF05368.8 gi|352682906|ref|YP_004893430.1| - 0.054 12.7 0.3 0.092 11.9 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family SIS PF01380.17 gi|352682906|ref|YP_004893430.1| - 0.089 12.3 0.1 0.37 10.4 0.0 2.0 2 0 0 2 2 2 0 SIS domain ACP_syn_III_C PF08541.5 gi|352682906|ref|YP_004893430.1| - 0.1 12.6 0.1 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AlaDh_PNT_C PF01262.16 gi|352682906|ref|YP_004893430.1| - 0.12 11.9 1.0 0.2 11.2 0.7 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TF_Zn_Ribbon PF08271.7 gi|352682907|ref|YP_004893431.1| - 4e-05 22.8 2.0 7.3e-05 21.9 1.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|352682907|ref|YP_004893431.1| - 0.0039 17.4 0.1 0.0088 16.3 0.1 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|352682907|ref|YP_004893431.1| - 0.0042 16.5 0.8 0.0071 15.8 0.6 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.1 gi|352682907|ref|YP_004893431.1| - 0.018 14.7 0.5 0.031 14.0 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_S27e PF01667.12 gi|352682907|ref|YP_004893431.1| - 0.12 11.9 0.3 0.3 10.6 0.2 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 PHD PF00628.24 gi|352682907|ref|YP_004893431.1| - 0.18 11.4 0.6 0.31 10.7 0.4 1.3 1 0 0 1 1 1 0 PHD-finger zf-ribbon_3 PF13248.1 gi|352682907|ref|YP_004893431.1| - 1.1 8.5 4.5 2 7.7 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Aminotran_1_2 PF00155.16 gi|352682908|ref|YP_004893432.1| - 1.5e-19 70.2 0.0 2.5e-19 69.4 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II EMG1 PF03587.9 gi|352682909|ref|YP_004893433.1| - 1.7e-46 158.0 0.0 2e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Glyco_transf_4 PF13439.1 gi|352682909|ref|YP_004893433.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Methyltransf_26 PF13659.1 gi|352682911|ref|YP_004893435.1| - 2.3e-08 34.0 0.2 5.1e-08 32.9 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|352682911|ref|YP_004893435.1| - 9.8e-06 25.0 0.0 3e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|352682911|ref|YP_004893435.1| - 2.2e-05 24.9 0.2 3.1e-05 24.5 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352682911|ref|YP_004893435.1| - 4.5e-05 23.0 0.1 8.3e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352682911|ref|YP_004893435.1| - 6.9e-05 23.1 0.3 0.00023 21.4 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352682911|ref|YP_004893435.1| - 0.00021 21.7 0.0 0.00035 21.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|352682911|ref|YP_004893435.1| - 0.002 18.5 0.2 0.004 17.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|352682911|ref|YP_004893435.1| - 0.051 12.6 0.6 0.073 12.1 0.4 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|352682911|ref|YP_004893435.1| - 0.055 13.1 0.0 0.23 11.1 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain RNA_pol_L_2 PF13656.1 gi|352682912|ref|YP_004893436.1| - 1.7e-18 65.8 0.0 1.9e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|352682912|ref|YP_004893436.1| - 0.0022 17.0 0.0 0.0035 16.4 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.4 gi|352682913|ref|YP_004893437.1| - 9.3e-38 129.6 0.2 1e-37 129.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) BMC PF00936.14 gi|352682913|ref|YP_004893437.1| - 0.072 12.7 0.9 0.47 10.1 0.0 2.4 3 1 1 4 4 4 0 BMC domain Prok-RING_1 PF14446.1 gi|352682914|ref|YP_004893438.1| - 0.00023 20.8 1.2 0.00058 19.5 0.8 1.6 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|352682914|ref|YP_004893438.1| - 0.00089 18.9 2.0 0.00089 18.9 1.4 1.7 2 0 0 2 2 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|352682914|ref|YP_004893438.1| - 0.00093 18.8 0.5 0.0016 18.0 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|352682914|ref|YP_004893438.1| - 0.0025 17.4 2.7 0.035 13.8 0.2 2.7 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain A2L_zn_ribbon PF08792.5 gi|352682914|ref|YP_004893438.1| - 0.0068 15.8 0.1 1.9 8.0 0.0 2.4 2 0 0 2 2 2 1 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|352682914|ref|YP_004893438.1| - 0.012 15.2 3.5 0.64 9.7 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|352682914|ref|YP_004893438.1| - 0.013 15.4 4.3 0.58 10.1 3.0 2.3 1 1 0 1 1 1 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|352682914|ref|YP_004893438.1| - 0.016 14.8 0.4 0.028 14.1 0.3 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|352682914|ref|YP_004893438.1| - 0.017 14.3 3.9 0.05 12.8 2.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|352682914|ref|YP_004893438.1| - 0.017 15.3 3.5 1.2 9.4 0.1 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.14 gi|352682914|ref|YP_004893438.1| - 0.031 13.7 0.8 0.95 9.0 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|352682914|ref|YP_004893438.1| - 0.043 13.1 3.4 2.9 7.3 0.3 2.3 1 1 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|352682914|ref|YP_004893438.1| - 0.054 13.3 0.2 0.095 12.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|352682914|ref|YP_004893438.1| - 0.06 13.3 4.2 2.4 8.2 0.4 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|352682914|ref|YP_004893438.1| - 0.064 13.0 4.7 2.8 7.8 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|352682914|ref|YP_004893438.1| - 0.071 12.6 0.6 1.2 8.6 0.0 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HypA PF01155.14 gi|352682914|ref|YP_004893438.1| - 0.072 12.7 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|352682914|ref|YP_004893438.1| - 0.078 12.9 1.3 9.8 6.2 0.1 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.7 gi|352682914|ref|YP_004893438.1| - 0.087 12.6 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons Ogr_Delta PF04606.7 gi|352682914|ref|YP_004893438.1| - 0.12 12.0 4.1 2.4 7.8 0.3 2.6 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-FPG_IleRS PF06827.9 gi|352682914|ref|YP_004893438.1| - 0.14 11.8 1.5 14 5.4 0.0 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.6 gi|352682914|ref|YP_004893438.1| - 0.34 10.4 4.3 1.4 8.5 3.0 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain ADK_lid PF05191.9 gi|352682914|ref|YP_004893438.1| - 0.37 10.4 2.7 5.8 6.6 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|352682914|ref|YP_004893438.1| - 0.63 9.6 5.3 5.3 6.6 3.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|352682914|ref|YP_004893438.1| - 0.7 9.7 2.3 16 5.4 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|352682914|ref|YP_004893438.1| - 0.72 10.0 7.8 12 6.1 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Cys_rich_KTR PF14205.1 gi|352682914|ref|YP_004893438.1| - 2.5 7.6 6.0 7 6.1 0.2 2.3 1 1 1 2 2 2 0 Cysteine-rich KTR Ribosomal_L23 PF00276.15 gi|352682915|ref|YP_004893439.1| - 1.3e-16 60.2 3.7 2e-16 59.7 2.6 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 DUF3952 PF13130.1 gi|352682915|ref|YP_004893439.1| - 0.024 14.5 0.3 0.029 14.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3952) Ribosomal_L4 PF00573.17 gi|352682916|ref|YP_004893440.1| - 2.6e-41 141.1 0.0 3e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|352682917|ref|YP_004893441.1| - 3.4e-58 197.1 0.0 3.9e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 DUF2175 PF09943.4 gi|352682918|ref|YP_004893442.1| - 1.7e-27 95.3 0.1 2e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) AP2 PF00847.15 gi|352682918|ref|YP_004893442.1| - 0.0056 16.8 0.7 0.064 13.4 0.1 2.2 2 0 0 2 2 2 1 AP2 domain Inhibitor_I9 PF05922.11 gi|352682918|ref|YP_004893442.1| - 0.052 14.1 0.0 0.056 14.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase inhibitor I9 DUF2685 PF10886.3 gi|352682918|ref|YP_004893442.1| - 0.063 13.3 0.0 0.097 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2685) Vps39_2 PF10367.4 gi|352682918|ref|YP_004893442.1| - 0.15 12.2 0.4 0.25 11.5 0.1 1.5 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 Alpha-amylase PF00128.19 gi|352682919|ref|YP_004893443.1| - 2.6e-38 132.2 0.0 3.6e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Glyco_hydro_31 PF01055.21 gi|352682920|ref|YP_004893444.1| - 8e-139 463.2 0.0 9.5e-139 463.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|352682920|ref|YP_004893444.1| - 4.2e-13 48.9 0.0 9.1e-13 47.8 0.0 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like DUF187 PF02638.10 gi|352682920|ref|YP_004893444.1| - 0.00064 18.6 0.3 0.023 13.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase like GH101 GHMP_kinases_N PF00288.21 gi|352682921|ref|YP_004893445.1| - 3.8e-12 46.0 2.4 4.9e-12 45.7 0.6 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain PP-binding PF00550.20 gi|352682921|ref|YP_004893445.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Phosphopantetheine attachment site Chorismate_synt PF01264.16 gi|352682922|ref|YP_004893446.1| - 4.6e-125 416.6 0.0 5.2e-125 416.4 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Shikimate_dh_N PF08501.6 gi|352682923|ref|YP_004893447.1| - 1.3e-24 86.0 0.0 2.4e-24 85.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|352682923|ref|YP_004893447.1| - 1.6e-16 60.6 0.3 9.2e-16 58.1 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|352682923|ref|YP_004893447.1| - 5.2e-06 26.7 0.8 1.4e-05 25.4 0.3 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|352682923|ref|YP_004893447.1| - 0.0011 18.0 0.2 0.0019 17.2 0.2 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|352682923|ref|YP_004893447.1| - 0.0014 18.8 0.0 0.0024 18.1 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|352682923|ref|YP_004893447.1| - 0.017 15.6 0.1 0.039 14.4 0.1 1.7 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|352682923|ref|YP_004893447.1| - 0.057 12.5 0.0 0.089 11.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHquinase_I PF01487.10 gi|352682924|ref|YP_004893448.1| - 1e-56 192.1 0.0 1.2e-56 191.8 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase CM_2 PF01817.16 gi|352682924|ref|YP_004893448.1| - 3.8e-13 49.3 0.1 8e-13 48.2 0.1 1.5 1 0 0 1 1 1 1 Chorismate mutase type II TMP-TENI PF02581.12 gi|352682924|ref|YP_004893448.1| - 0.093 11.8 0.1 6 5.9 0.0 2.8 3 0 0 3 3 3 0 Thiamine monophosphate synthase/TENI Aminotran_1_2 PF00155.16 gi|352682925|ref|YP_004893449.1| - 1.8e-35 122.5 0.0 2.9e-35 121.8 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|352682925|ref|YP_004893449.1| - 0.00055 18.7 0.0 0.001 17.8 0.0 1.4 2 0 0 2 2 2 1 Allinase EPSP_synthase PF00275.15 gi|352682926|ref|YP_004893450.1| - 6.2e-52 176.4 0.0 7.6e-52 176.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B5 PF03484.10 gi|352682926|ref|YP_004893450.1| - 0.023 14.5 0.0 0.42 10.4 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetase B5 domain DHQ_synthase PF01761.15 gi|352682927|ref|YP_004893451.1| - 2.2e-81 272.6 0.0 2.5e-81 272.4 0.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|352682927|ref|YP_004893451.1| - 2.9e-07 30.0 0.5 4e-06 26.3 0.4 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|352682927|ref|YP_004893451.1| - 0.0011 17.6 2.6 0.054 12.1 0.4 2.4 2 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase Transket_pyr PF02779.19 gi|352682928|ref|YP_004893452.1| - 1.6e-35 122.2 0.1 5e-35 120.5 0.1 1.8 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|352682928|ref|YP_004893452.1| - 6.9e-25 87.3 0.0 1.2e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transketolase_N PF00456.16 gi|352682929|ref|YP_004893453.1| - 7e-43 146.6 0.2 1.8e-42 145.3 0.2 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|352682929|ref|YP_004893453.1| - 5.4e-12 45.2 1.3 2.2e-07 30.0 1.0 3.0 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|352682929|ref|YP_004893453.1| - 2e-07 30.7 0.5 2.8e-06 26.9 0.4 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.15 gi|352682929|ref|YP_004893453.1| - 3e-06 26.1 0.0 3.3e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component tRNA-synt_1b PF00579.20 gi|352682930|ref|YP_004893454.1| - 3.5e-36 124.8 0.0 5.9e-34 117.5 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DAHP_synth_1 PF00793.15 gi|352682931|ref|YP_004893455.1| - 1.9e-72 243.2 0.0 2.5e-72 242.8 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|352682931|ref|YP_004893455.1| - 2.3e-08 33.4 0.0 3.9e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 NeuB family TPP_enzyme_C PF02775.16 gi|352682932|ref|YP_004893456.1| - 4.2e-28 97.8 0.0 7.5e-28 97.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|352682932|ref|YP_004893456.1| - 1.1e-13 50.9 1.6 8.2e-13 48.0 1.1 2.1 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|352682933|ref|YP_004893457.1| - 1.7e-52 178.2 0.1 2.9e-52 177.4 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|352682933|ref|YP_004893457.1| - 1e-29 103.6 0.0 3.7e-29 101.8 0.0 1.9 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|352682933|ref|YP_004893457.1| - 0.036 13.9 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|352682933|ref|YP_004893457.1| - 0.047 13.1 0.3 0.11 12.0 0.2 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CW_binding_2 PF04122.7 gi|352682933|ref|YP_004893457.1| - 0.086 13.0 0.8 0.51 10.5 0.0 2.4 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 Grp1_Fun34_YaaH PF01184.14 gi|352682934|ref|YP_004893458.1| - 1.9e-39 135.1 36.3 6.7e-39 133.3 25.2 1.7 1 1 0 1 1 1 1 GPR1/FUN34/yaaH family AMP-binding PF00501.23 gi|352682935|ref|YP_004893459.1| - 8.8e-97 324.1 0.0 1.1e-96 323.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|352682935|ref|YP_004893459.1| - 7.5e-25 87.6 0.4 4.3e-24 85.2 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain FBPase_3 PF01950.11 gi|352682936|ref|YP_004893460.1| - 4.9e-179 594.9 0.0 6.1e-179 594.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Acetyltransf_1 PF00583.19 gi|352682937|ref|YP_004893461.1| - 1.3e-06 28.3 0.1 1.8e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|352682937|ref|YP_004893461.1| - 5.5e-06 26.5 0.0 7.9e-06 26.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|352682937|ref|YP_004893461.1| - 0.069 13.0 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Fumerase_C PF05683.7 gi|352682938|ref|YP_004893462.1| - 7.1e-59 198.3 0.2 8e-59 198.2 0.2 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF2560 PF10834.3 gi|352682938|ref|YP_004893462.1| - 0.11 12.4 0.2 0.55 10.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2560) Fumerase PF05681.9 gi|352682939|ref|YP_004893463.1| - 2.2e-87 292.5 0.0 2.5e-87 292.3 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) ATP-synt_DE PF00401.15 gi|352682939|ref|YP_004893463.1| - 0.061 13.2 1.3 0.061 13.2 0.9 2.1 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain H-K_ATPase_N PF09040.6 gi|352682939|ref|YP_004893463.1| - 0.15 12.2 1.2 0.46 10.6 0.1 2.2 2 0 0 2 2 2 0 Gastric H+/K+-ATPase, N terminal domain RHH_1 PF01402.16 gi|352682940|ref|YP_004893464.1| - 7.1e-07 28.8 0.1 1.3e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ThiS PF02597.15 gi|352682941|ref|YP_004893465.1| - 1.9e-18 66.6 0.0 2.2e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|352682941|ref|YP_004893465.1| - 0.00014 21.6 0.2 0.65 9.8 0.0 2.5 2 1 1 3 3 3 2 TGS domain Urm1 PF09138.6 gi|352682941|ref|YP_004893465.1| - 0.00054 20.0 0.0 0.00056 19.9 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) EF-hand_8 PF13833.1 gi|352682941|ref|YP_004893465.1| - 0.014 15.0 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair Peptidase_C30 PF05409.8 gi|352682941|ref|YP_004893465.1| - 0.11 11.4 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Coronavirus endopeptidase C30 AFOR_C PF01314.13 gi|352682942|ref|YP_004893466.1| - 3.8e-115 384.6 0.0 4.7e-115 384.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|352682942|ref|YP_004893466.1| - 6.7e-70 234.5 0.1 1e-69 233.9 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|352682943|ref|YP_004893467.1| - 1e-10 41.8 0.0 1.2e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|352682943|ref|YP_004893467.1| - 0.012 15.4 0.3 0.2 11.4 0.2 2.1 1 1 0 1 1 1 0 TGS domain Urm1 PF09138.6 gi|352682943|ref|YP_004893467.1| - 0.02 14.9 0.5 0.023 14.8 0.3 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) IlvN PF07991.7 gi|352682944|ref|YP_004893468.1| - 5.4e-44 149.4 0.1 8.6e-44 148.8 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|352682944|ref|YP_004893468.1| - 6.7e-09 36.0 0.1 1.7e-08 34.7 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvC PF01450.14 gi|352682944|ref|YP_004893468.1| - 1.8e-08 34.4 0.0 2.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|352682944|ref|YP_004893468.1| - 2.7e-07 30.5 0.0 4.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|352682944|ref|YP_004893468.1| - 3.5e-07 29.5 0.0 9.3e-07 28.1 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|352682944|ref|YP_004893468.1| - 0.00055 19.8 0.0 0.00097 19.0 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|352682944|ref|YP_004893468.1| - 0.017 14.7 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|352682944|ref|YP_004893468.1| - 0.023 14.4 0.3 0.2 11.3 0.0 2.1 2 0 0 2 2 2 0 Rossmann-like domain TrkA_N PF02254.13 gi|352682944|ref|YP_004893468.1| - 0.046 13.7 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|352682944|ref|YP_004893468.1| - 0.065 12.9 2.2 0.53 10.0 0.0 2.9 3 1 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|352682944|ref|YP_004893468.1| - 0.15 12.3 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding PTPS PF01242.14 gi|352682945|ref|YP_004893469.1| - 5.6e-08 32.4 0.0 6.7e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF1886 PF09171.5 gi|352682946|ref|YP_004893470.1| - 1.9e-05 23.7 0.0 3.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) EndIII_4Fe-2S PF10576.4 gi|352682946|ref|YP_004893470.1| - 0.0083 16.2 8.4 0.014 15.5 5.8 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HTH_10 PF04967.7 gi|352682946|ref|YP_004893470.1| - 0.065 12.8 0.0 6.4 6.4 0.0 2.6 2 0 0 2 2 2 0 HTH DNA binding domain DUF4199 PF13858.1 gi|352682947|ref|YP_004893471.1| - 0.0085 16.0 0.4 0.0085 16.0 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) SpoVAB PF13782.1 gi|352682947|ref|YP_004893471.1| - 0.058 13.3 1.8 0.15 12.0 1.1 1.8 1 1 1 2 2 2 0 Stage V sporulation protein AB Romo1 PF10247.4 gi|352682947|ref|YP_004893471.1| - 0.84 9.8 5.6 2.1 8.5 0.0 2.9 2 1 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Bacteriocin_IIc PF10439.4 gi|352682947|ref|YP_004893471.1| - 2.4 8.3 9.6 2.8 8.1 0.1 3.0 3 0 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide DUF711 PF05167.7 gi|352682948|ref|YP_004893472.1| - 2.6e-52 177.9 0.0 1.6e-51 175.3 0.0 1.9 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) GAF_2 PF13185.1 gi|352682948|ref|YP_004893472.1| - 0.084 13.3 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 GAF domain IF3_N PF05198.11 gi|352682948|ref|YP_004893472.1| - 0.089 12.7 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain Peripla_BP_2 PF01497.13 gi|352682949|ref|YP_004893473.1| - 6e-10 38.6 0.0 1e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein UDPG_MGDP_dh_N PF03721.9 gi|352682951|ref|YP_004893475.1| - 5.4e-38 130.2 1.1 2e-37 128.3 0.6 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|352682951|ref|YP_004893475.1| - 1.1e-26 92.9 0.0 3.3e-26 91.5 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|352682951|ref|YP_004893475.1| - 5.4e-19 68.1 0.0 1.1e-18 67.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain F420_oxidored PF03807.12 gi|352682951|ref|YP_004893475.1| - 3.5e-05 24.1 4.7 0.12 12.7 0.0 4.6 4 1 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|352682951|ref|YP_004893475.1| - 0.00085 19.2 0.3 0.028 14.2 0.1 2.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|352682951|ref|YP_004893475.1| - 0.0019 17.9 0.2 0.32 10.7 0.0 2.9 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|352682951|ref|YP_004893475.1| - 0.0043 17.0 3.1 0.16 12.0 0.2 3.0 3 0 0 3 3 3 1 TrkA-N domain Methyltransf_18 PF12847.2 gi|352682951|ref|YP_004893475.1| - 0.015 15.8 0.1 0.044 14.3 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain 3HCDH_N PF02737.13 gi|352682951|ref|YP_004893475.1| - 0.018 14.7 1.6 0.026 14.1 0.5 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|352682951|ref|YP_004893475.1| - 0.053 13.6 0.0 0.22 11.5 0.0 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.16 gi|352682951|ref|YP_004893475.1| - 0.054 13.3 0.1 4.4 7.1 0.3 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Methyltransf_26 PF13659.1 gi|352682951|ref|YP_004893475.1| - 0.06 13.3 0.6 0.77 9.8 0.0 2.5 2 1 0 2 2 2 0 Methyltransferase domain NAD_binding_7 PF13241.1 gi|352682951|ref|YP_004893475.1| - 0.12 12.6 1.9 6.4 7.0 0.0 2.7 3 0 0 3 3 3 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|352682951|ref|YP_004893475.1| - 0.12 11.4 0.1 4.9 6.2 0.0 2.5 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|352682951|ref|YP_004893475.1| - 0.71 9.6 4.3 12 5.7 0.0 3.1 2 1 0 2 2 2 0 ThiF family BPD_transp_1 PF00528.17 gi|352682952|ref|YP_004893476.1| - 3e-19 69.2 20.6 3e-19 69.2 14.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|352682953|ref|YP_004893477.1| - 1.9e-14 53.5 21.7 1.9e-14 53.5 15.0 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3930 PF13067.1 gi|352682953|ref|YP_004893477.1| - 0.058 13.2 2.7 0.21 11.4 1.9 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3930) SBP_bac_8 PF13416.1 gi|352682954|ref|YP_004893478.1| - 5.8e-24 85.2 9.8 9e-24 84.6 6.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SoxE PF06525.6 gi|352682954|ref|YP_004893478.1| - 0.00077 18.7 3.7 0.0018 17.5 2.6 1.6 1 0 0 1 1 1 1 Sulfocyanin (SoxE) DUF1510 PF07423.6 gi|352682954|ref|YP_004893478.1| - 0.076 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) SpoIIIAH PF12685.2 gi|352682954|ref|YP_004893478.1| - 0.12 11.8 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein Mucin PF01456.12 gi|352682954|ref|YP_004893478.1| - 5.8 6.6 25.5 12 5.7 17.7 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein Sporozoite_P67 PF05642.6 gi|352682954|ref|YP_004893478.1| - 9.9 3.8 7.8 16 3.2 5.4 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Glyco_hydro_57 PF03065.10 gi|352682955|ref|YP_004893479.1| - 9.1e-46 156.4 0.4 6.4e-45 153.6 0.3 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 POR PF01558.13 gi|352682956|ref|YP_004893480.1| - 9.5e-28 97.2 1.4 1.3e-27 96.7 0.9 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|352682958|ref|YP_004893482.1| - 6e-14 50.9 16.7 1.1e-07 31.1 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352682958|ref|YP_004893482.1| - 6.5e-11 41.9 8.7 7.8e-11 41.6 6.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352682958|ref|YP_004893482.1| - 1.7e-10 40.2 13.5 4.2e-06 26.3 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352682958|ref|YP_004893482.1| - 5.2e-10 38.9 22.4 4.2e-07 29.6 8.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352682958|ref|YP_004893482.1| - 1e-09 38.6 9.2 1.4e-09 38.1 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352682958|ref|YP_004893482.1| - 3.5e-09 36.0 11.4 0.00017 21.3 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352682958|ref|YP_004893482.1| - 2.8e-08 33.8 11.0 3.5e-08 33.5 7.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|352682958|ref|YP_004893482.1| - 3.6e-08 34.0 9.4 0.00025 21.6 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|352682958|ref|YP_004893482.1| - 1e-06 29.1 5.8 0.00088 19.7 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|352682958|ref|YP_004893482.1| - 1.6e-06 28.3 3.1 0.014 15.6 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352682958|ref|YP_004893482.1| - 6.7e-05 22.8 9.7 0.00026 20.9 6.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352682958|ref|YP_004893482.1| - 9.2e-05 22.4 10.6 0.007 16.6 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|352682958|ref|YP_004893482.1| - 0.00013 22.3 10.5 0.002 18.5 0.5 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|352682958|ref|YP_004893482.1| - 0.0084 16.5 13.8 0.16 12.3 1.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Ral PF11058.3 gi|352682958|ref|YP_004893482.1| - 0.093 12.1 0.3 0.17 11.3 0.2 1.4 1 0 0 1 1 1 0 Antirestriction protein Ral Fer4_3 PF12798.2 gi|352682958|ref|YP_004893482.1| - 1.4 9.6 18.0 0.19 12.3 4.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|352682959|ref|YP_004893483.1| - 4.2e-71 239.1 0.1 5.7e-71 238.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|352682959|ref|YP_004893483.1| - 6.5e-06 26.0 0.1 1.3e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|352682960|ref|YP_004893484.1| - 5.1e-23 81.3 0.2 7.9e-23 80.7 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|352682960|ref|YP_004893484.1| - 0.00015 20.8 0.0 0.0002 20.4 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Aldedh PF00171.17 gi|352682961|ref|YP_004893485.1| - 1.5e-146 488.4 0.0 1.9e-146 488.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|352682961|ref|YP_004893485.1| - 0.015 13.9 0.0 0.18 10.4 0.0 2.0 2 0 0 2 2 2 0 Acyl-CoA reductase (LuxC) Adeno_E4_34 PF04528.8 gi|352682962|ref|YP_004893486.1| - 0.019 14.5 0.8 0.019 14.5 0.6 1.1 1 0 0 1 1 1 0 Adenovirus early E4 34 kDa protein conserved region Thy1 PF02511.10 gi|352682964|ref|YP_004893488.1| - 2.1e-14 53.3 1.0 2.7e-14 52.9 0.7 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein HTH_45 PF14947.1 gi|352682965|ref|YP_004893489.1| - 2.5e-07 30.4 0.0 2.7e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.1 gi|352682965|ref|YP_004893489.1| - 0.001 19.2 0.1 0.0012 18.9 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|352682965|ref|YP_004893489.1| - 0.0018 18.2 0.0 0.0034 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|352682965|ref|YP_004893489.1| - 0.0021 17.6 0.1 0.0046 16.5 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.14 gi|352682965|ref|YP_004893489.1| - 0.019 14.6 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SLH PF00395.15 gi|352682965|ref|YP_004893489.1| - 0.046 13.4 0.0 0.087 12.5 0.0 1.5 1 0 0 1 1 1 0 S-layer homology domain DUF4364 PF14277.1 gi|352682965|ref|YP_004893489.1| - 0.059 12.9 0.0 0.061 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_24 PF13412.1 gi|352682965|ref|YP_004893489.1| - 0.088 12.2 0.0 0.2 11.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|352682968|ref|YP_004893492.1| - 7e-16 57.8 0.5 1.4e-15 56.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|352682968|ref|YP_004893492.1| - 1.5e-15 57.1 0.0 3.8e-15 55.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|352682968|ref|YP_004893492.1| - 1e-11 44.6 0.0 3.6e-11 42.9 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|352682968|ref|YP_004893492.1| - 1.6e-10 41.0 0.0 3.2e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|352682968|ref|YP_004893492.1| - 3.9e-05 23.1 0.1 0.00011 21.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|352682968|ref|YP_004893492.1| - 0.00035 20.3 0.1 0.0024 17.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_35 PF13693.1 gi|352682968|ref|YP_004893492.1| - 0.0013 18.5 0.1 0.0028 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.11 gi|352682968|ref|YP_004893492.1| - 0.003 17.0 0.0 0.0097 15.4 0.0 1.9 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_IclR PF09339.5 gi|352682968|ref|YP_004893492.1| - 0.0076 15.8 0.1 0.021 14.4 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|352682968|ref|YP_004893492.1| - 0.028 14.2 0.1 0.1 12.4 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|352682968|ref|YP_004893492.1| - 0.042 13.2 0.3 0.092 12.1 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cupin_2 PF07883.6 gi|352682968|ref|YP_004893492.1| - 0.046 13.2 0.1 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 Cupin domain LysM PF01476.15 gi|352682968|ref|YP_004893492.1| - 0.056 13.3 0.0 4.7 7.1 0.0 2.5 2 0 0 2 2 2 0 LysM domain Phage_CI_repr PF07022.8 gi|352682968|ref|YP_004893492.1| - 0.085 12.9 0.1 0.29 11.2 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain RHH_1 PF01402.16 gi|352682968|ref|YP_004893492.1| - 0.086 12.7 0.8 0.27 11.2 0.6 1.8 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family NAAA-beta PF15508.1 gi|352682968|ref|YP_004893492.1| - 0.13 12.6 0.0 1.6 9.1 0.0 2.6 2 0 0 2 2 2 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase EamA PF00892.15 gi|352682969|ref|YP_004893493.1| - 1.1e-28 99.7 41.7 4.1e-20 72.0 11.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|352682969|ref|YP_004893493.1| - 0.00027 21.1 31.9 0.0081 16.3 8.9 2.9 1 1 2 3 3 3 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|352682969|ref|YP_004893493.1| - 0.0013 18.4 13.1 0.0013 18.4 9.1 2.4 2 1 0 2 2 2 1 Triose-phosphate Transporter family GTP_EFTU PF00009.22 gi|352682971|ref|YP_004893495.1| - 8.6e-32 110.0 0.0 1.7e-31 109.1 0.0 1.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|352682971|ref|YP_004893495.1| - 1.5e-17 63.4 0.2 3.2e-17 62.3 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|352682971|ref|YP_004893495.1| - 2.1e-06 27.7 0.1 5.5e-06 26.4 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|352682971|ref|YP_004893495.1| - 0.0072 16.2 0.0 0.027 14.4 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|352682971|ref|YP_004893495.1| - 0.009 15.3 0.2 1.9 7.7 0.0 2.6 2 1 0 2 2 2 2 Ferrous iron transport protein B SRPRB PF09439.5 gi|352682971|ref|YP_004893495.1| - 0.022 14.0 0.1 0.51 9.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit HSBP1 PF06825.7 gi|352682972|ref|YP_004893496.1| - 2.5e-10 39.7 30.1 0.018 14.6 2.1 5.3 1 1 4 5 5 5 5 Heat shock factor binding protein 1 MCPsignal PF00015.16 gi|352682972|ref|YP_004893496.1| - 4.8e-07 29.5 2.9 6.9e-07 29.0 2.0 1.2 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain TPR_MLP1_2 PF07926.7 gi|352682972|ref|YP_004893496.1| - 8.1e-07 28.8 8.3 0.00037 20.2 1.0 2.3 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein DUF3552 PF12072.3 gi|352682972|ref|YP_004893496.1| - 8.4e-07 28.4 14.0 0.00062 19.0 2.6 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) Matrilin_ccoil PF10393.4 gi|352682972|ref|YP_004893496.1| - 9.9e-07 28.0 6.6 0.06 12.7 0.1 4.2 2 1 2 4 4 4 1 Trimeric coiled-coil oligomerisation domain of matrilin NPV_P10 PF05531.7 gi|352682972|ref|YP_004893496.1| - 1.2e-06 28.6 11.4 0.0012 19.0 2.2 3.1 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|352682972|ref|YP_004893496.1| - 1.4e-06 27.0 5.2 2.2e-06 26.4 3.6 1.3 1 0 0 1 1 1 1 AAA domain Nup54 PF13874.1 gi|352682972|ref|YP_004893496.1| - 1.8e-06 27.6 6.8 2.1e-05 24.2 1.4 2.2 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 Atg14 PF10186.4 gi|352682972|ref|YP_004893496.1| - 2.1e-06 26.9 9.3 3.2e-06 26.2 6.5 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Baculo_PEP_C PF04513.7 gi|352682972|ref|YP_004893496.1| - 2.8e-06 27.2 4.0 0.0012 18.6 0.3 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus FliD_C PF07195.7 gi|352682972|ref|YP_004893496.1| - 3e-06 26.6 8.7 0.0015 17.8 3.1 2.9 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus Snapin_Pallidin PF14712.1 gi|352682972|ref|YP_004893496.1| - 4.8e-06 26.8 10.0 0.0046 17.2 2.4 2.6 1 1 1 2 2 2 2 Snapin/Pallidin TMF_DNA_bd PF12329.3 gi|352682972|ref|YP_004893496.1| - 8.3e-06 25.5 12.8 0.019 14.7 2.2 3.9 1 1 2 3 3 3 2 TATA element modulatory factor 1 DNA binding FH2 PF02181.18 gi|352682972|ref|YP_004893496.1| - 1.2e-05 24.3 7.5 0.00023 20.1 0.9 1.7 1 1 1 2 2 2 2 Formin Homology 2 Domain MscS_porin PF12795.2 gi|352682972|ref|YP_004893496.1| - 2e-05 24.0 7.2 0.00021 20.6 2.0 2.9 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain DUF1664 PF07889.7 gi|352682972|ref|YP_004893496.1| - 2.1e-05 24.3 11.6 0.00049 19.8 2.6 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|352682972|ref|YP_004893496.1| - 2.5e-05 24.0 3.1 0.0067 16.2 0.5 2.5 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) Spectrin PF00435.16 gi|352682972|ref|YP_004893496.1| - 3.5e-05 24.0 5.3 0.029 14.6 0.5 2.2 1 1 1 2 2 2 2 Spectrin repeat Tektin PF03148.9 gi|352682972|ref|YP_004893496.1| - 5.9e-05 21.7 11.4 0.00092 17.8 2.4 2.1 1 1 1 2 2 2 2 Tektin family DivIVA PF05103.8 gi|352682972|ref|YP_004893496.1| - 7.3e-05 22.8 7.3 0.25 11.4 0.4 3.3 1 1 2 3 3 3 1 DivIVA protein Tropomyosin PF00261.15 gi|352682972|ref|YP_004893496.1| - 7.7e-05 21.8 30.7 0.002 17.2 6.9 1.9 1 1 1 2 2 2 2 Tropomyosin Prefoldin PF02996.12 gi|352682972|ref|YP_004893496.1| - 8.4e-05 22.2 9.9 0.064 12.9 0.6 3.2 1 1 2 3 3 3 2 Prefoldin subunit Lebercilin PF15619.1 gi|352682972|ref|YP_004893496.1| - 8.7e-05 22.0 19.2 0.0024 17.3 5.6 2.1 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease HalX PF08663.5 gi|352682972|ref|YP_004893496.1| - 0.00011 22.1 13.8 0.15 12.0 0.7 4.2 1 1 3 4 4 4 1 HalX domain Seryl_tRNA_N PF02403.17 gi|352682972|ref|YP_004893496.1| - 0.00012 22.1 22.4 0.002 18.1 5.4 2.6 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.7 gi|352682972|ref|YP_004893496.1| - 0.00015 21.4 9.8 0.00052 19.7 5.4 2.5 1 1 1 2 2 1 1 Laminin Domain II Tropomyosin_1 PF12718.2 gi|352682972|ref|YP_004893496.1| - 0.00016 21.5 9.8 0.00035 20.4 6.8 1.7 1 1 0 1 1 1 1 Tropomyosin like AKNA PF12443.3 gi|352682972|ref|YP_004893496.1| - 0.00019 21.4 5.5 1.6 8.7 0.8 3.3 1 1 1 2 2 2 0 AT-hook-containing transcription factor IncA PF04156.9 gi|352682972|ref|YP_004893496.1| - 0.00019 21.0 9.9 0.0024 17.5 6.9 2.2 1 1 0 1 1 1 1 IncA protein DUF3829 PF12889.2 gi|352682972|ref|YP_004893496.1| - 0.00019 20.7 1.8 0.0063 15.7 0.8 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3829) DivIC PF04977.10 gi|352682972|ref|YP_004893496.1| - 0.00019 20.8 14.5 0.046 13.2 0.7 3.5 1 1 2 3 3 3 2 Septum formation initiator FlaC_arch PF05377.6 gi|352682972|ref|YP_004893496.1| - 0.0002 21.2 8.1 0.093 12.6 0.1 3.6 1 1 1 2 2 2 1 Flagella accessory protein C (FlaC) Fib_alpha PF08702.5 gi|352682972|ref|YP_004893496.1| - 0.0002 21.5 6.9 0.0092 16.1 2.4 2.6 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Uds1 PF15456.1 gi|352682972|ref|YP_004893496.1| - 0.0002 21.3 9.6 0.0077 16.2 6.6 2.9 1 1 0 1 1 1 1 Up-regulated During Septation Prefoldin_2 PF01920.15 gi|352682972|ref|YP_004893496.1| - 0.00022 20.9 10.2 0.092 12.5 0.1 3.4 2 1 2 4 4 3 2 Prefoldin subunit RmuC PF02646.11 gi|352682972|ref|YP_004893496.1| - 0.00022 20.1 3.2 0.048 12.4 0.3 2.1 1 1 1 2 2 2 2 RmuC family Prefoldin_3 PF13758.1 gi|352682972|ref|YP_004893496.1| - 0.00023 20.8 14.0 0.047 13.4 3.7 3.6 1 1 2 3 3 3 1 Prefoldin subunit MbeD_MobD PF04899.7 gi|352682972|ref|YP_004893496.1| - 0.00027 20.7 1.5 1 9.3 0.3 3.3 1 1 2 3 3 3 0 MbeD/MobD like FemAB PF02388.11 gi|352682972|ref|YP_004893496.1| - 0.00027 19.7 6.2 0.0031 16.2 0.5 2.0 1 1 1 2 2 2 2 FemAB family Vps51 PF08700.6 gi|352682972|ref|YP_004893496.1| - 0.00027 20.7 4.2 0.59 10.0 0.0 3.3 2 1 1 3 3 3 0 Vps51/Vps67 Myosin_tail_1 PF01576.14 gi|352682972|ref|YP_004893496.1| - 0.00028 18.8 10.1 0.00036 18.4 7.0 1.3 1 0 0 1 1 1 1 Myosin tail TMF_TATA_bd PF12325.3 gi|352682972|ref|YP_004893496.1| - 0.00028 20.6 5.3 0.00028 20.6 3.7 2.1 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding MitMem_reg PF13012.1 gi|352682972|ref|YP_004893496.1| - 0.0003 20.8 0.7 0.0059 16.6 0.5 2.2 1 1 0 1 1 1 1 Maintenance of mitochondrial structure and function Hemagglutinin PF00509.13 gi|352682972|ref|YP_004893496.1| - 0.00031 19.0 8.8 0.031 12.4 2.3 2.2 1 1 1 2 2 2 2 Haemagglutinin DUF3450 PF11932.3 gi|352682972|ref|YP_004893496.1| - 0.00032 20.0 5.6 0.011 15.0 3.8 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3450) V_ATPase_I PF01496.14 gi|352682972|ref|YP_004893496.1| - 0.00034 18.6 6.3 0.0024 15.8 0.4 1.8 1 1 1 2 2 2 1 V-type ATPase 116kDa subunit family Laminin_I PF06008.9 gi|352682972|ref|YP_004893496.1| - 0.00034 20.0 8.8 0.00056 19.3 4.9 2.0 1 1 1 2 2 1 1 Laminin Domain I DUF2408 PF10303.4 gi|352682972|ref|YP_004893496.1| - 0.00039 20.5 4.4 0.00052 20.1 3.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2408) Apolipoprotein PF01442.13 gi|352682972|ref|YP_004893496.1| - 0.00042 19.8 6.6 0.00045 19.7 2.4 2.0 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain Cortex-I_coil PF09304.5 gi|352682972|ref|YP_004893496.1| - 0.00049 20.1 14.8 0.52 10.3 1.6 3.1 1 1 2 3 3 3 0 Cortexillin I, coiled coil MtrG PF04210.8 gi|352682972|ref|YP_004893496.1| - 0.00059 19.4 16.0 1 9.1 0.2 4.6 1 1 3 4 4 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G ZapA PF05164.8 gi|352682972|ref|YP_004893496.1| - 0.0006 19.7 8.3 0.16 11.9 5.3 3.3 1 1 1 2 2 2 1 Cell division protein ZapA Reo_sigmaC PF04582.7 gi|352682972|ref|YP_004893496.1| - 0.00067 18.9 1.7 0.42 9.7 0.1 2.2 1 1 1 2 2 2 1 Reovirus sigma C capsid protein TBPIP PF07106.8 gi|352682972|ref|YP_004893496.1| - 0.0007 19.1 3.3 0.0007 19.1 2.3 2.3 2 1 1 3 3 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CALCOCO1 PF07888.6 gi|352682972|ref|YP_004893496.1| - 0.00072 17.9 6.5 0.0009 17.6 4.5 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like BLOC1_2 PF10046.4 gi|352682972|ref|YP_004893496.1| - 0.00072 19.6 7.8 0.093 12.8 1.4 2.4 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mnd1 PF03962.10 gi|352682972|ref|YP_004893496.1| - 0.00077 19.1 7.3 0.03 14.0 2.1 2.8 1 1 1 2 2 2 1 Mnd1 family BicD PF09730.4 gi|352682972|ref|YP_004893496.1| - 0.0008 17.9 3.5 0.0012 17.3 2.4 1.3 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D DUF2802 PF10975.3 gi|352682972|ref|YP_004893496.1| - 0.0011 18.7 3.8 4.7 7.0 0.1 3.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) TelA PF05816.6 gi|352682972|ref|YP_004893496.1| - 0.0012 17.5 11.5 0.091 11.4 6.6 2.9 1 1 1 2 2 2 1 Toxic anion resistance protein (TelA) bZIP_1 PF00170.16 gi|352682972|ref|YP_004893496.1| - 0.0014 18.5 2.6 7.1 6.6 0.1 3.4 1 1 2 3 3 3 0 bZIP transcription factor PilJ PF13675.1 gi|352682972|ref|YP_004893496.1| - 0.0014 18.8 3.3 0.093 13.0 0.4 2.3 1 1 1 2 2 2 2 Type IV pili methyl-accepting chemotaxis transducer N-term HR1 PF02185.11 gi|352682972|ref|YP_004893496.1| - 0.0015 18.2 8.8 0.49 10.1 0.1 3.2 1 1 2 3 3 3 1 Hr1 repeat DUF4200 PF13863.1 gi|352682972|ref|YP_004893496.1| - 0.0016 18.4 12.1 0.023 14.6 4.6 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4200) COG2 PF06148.6 gi|352682972|ref|YP_004893496.1| - 0.0016 18.3 7.1 0.048 13.5 1.1 2.7 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Sec5 PF15469.1 gi|352682972|ref|YP_004893496.1| - 0.0017 18.0 6.1 0.02 14.6 2.0 2.1 1 1 1 2 2 2 1 Exocyst complex component Sec5 DUF3584 PF12128.3 gi|352682972|ref|YP_004893496.1| - 0.0018 15.7 6.1 0.0021 15.5 4.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) UPF0449 PF15136.1 gi|352682972|ref|YP_004893496.1| - 0.0019 18.3 6.9 0.15 12.2 0.2 3.1 2 1 0 2 2 2 1 Uncharacterised protein family UPF0449 WXG100 PF06013.7 gi|352682972|ref|YP_004893496.1| - 0.0019 18.1 2.0 1.2 9.2 0.1 3.2 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Allexi_40kDa PF05549.6 gi|352682972|ref|YP_004893496.1| - 0.002 17.4 3.2 0.013 14.8 2.2 1.9 1 1 0 1 1 1 1 Allexivirus 40kDa protein GAS PF13851.1 gi|352682972|ref|YP_004893496.1| - 0.002 17.3 8.5 0.0081 15.3 4.5 2.0 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Ax_dynein_light PF10211.4 gi|352682972|ref|YP_004893496.1| - 0.002 17.9 8.5 0.095 12.5 1.8 2.5 1 1 1 2 2 2 1 Axonemal dynein light chain DUF2884 PF11101.3 gi|352682972|ref|YP_004893496.1| - 0.0021 17.4 3.0 0.027 13.8 1.2 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF2884) AAA_27 PF13514.1 gi|352682972|ref|YP_004893496.1| - 0.0022 15.8 10.5 0.0023 15.7 6.0 1.7 1 1 0 1 1 1 1 AAA domain SlyX PF04102.7 gi|352682972|ref|YP_004893496.1| - 0.0024 18.2 14.0 1 9.7 2.7 3.8 2 1 1 3 3 2 0 SlyX AATF-Che1 PF13339.1 gi|352682972|ref|YP_004893496.1| - 0.0025 17.9 4.0 0.078 13.1 2.1 2.1 1 1 1 2 2 2 1 Apoptosis antagonizing transcription factor Transposase_22 PF02994.9 gi|352682972|ref|YP_004893496.1| - 0.0025 16.3 11.5 0.015 13.7 7.9 1.9 1 1 0 1 1 1 1 L1 transposable element DUF2730 PF10805.3 gi|352682972|ref|YP_004893496.1| - 0.0027 17.4 6.3 0.046 13.4 0.9 2.9 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) CENP-Q PF13094.1 gi|352682972|ref|YP_004893496.1| - 0.0028 17.6 4.6 0.0079 16.2 3.0 1.8 1 1 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit EzrA PF06160.7 gi|352682972|ref|YP_004893496.1| - 0.0028 15.9 6.8 0.0054 14.9 4.5 1.4 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4407 PF14362.1 gi|352682972|ref|YP_004893496.1| - 0.0029 16.5 5.6 0.0071 15.3 3.9 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4407) Syntaxin-6_N PF09177.6 gi|352682972|ref|YP_004893496.1| - 0.0029 17.9 8.7 0.11 12.8 1.2 2.7 1 1 1 2 2 2 1 Syntaxin 6, N-terminal IFT57 PF10498.4 gi|352682972|ref|YP_004893496.1| - 0.0032 16.2 4.2 0.0041 15.9 2.9 1.2 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 ISG65-75 PF11727.3 gi|352682972|ref|YP_004893496.1| - 0.0033 16.5 3.8 0.0052 15.8 2.6 1.4 1 0 0 1 1 1 1 Invariant surface glycoprotein LXG PF04740.7 gi|352682972|ref|YP_004893496.1| - 0.0037 17.0 4.3 0.0061 16.3 3.0 1.4 1 0 0 1 1 1 1 LXG domain of WXG superfamily Syntaxin PF00804.20 gi|352682972|ref|YP_004893496.1| - 0.0038 17.3 9.2 1.1 9.4 6.3 2.5 1 1 1 2 2 2 0 Syntaxin DUF4446 PF14584.1 gi|352682972|ref|YP_004893496.1| - 0.0042 16.9 6.3 0.033 14.0 0.6 2.4 1 1 2 3 3 3 1 Protein of unknown function (DUF4446) FlxA PF14282.1 gi|352682972|ref|YP_004893496.1| - 0.0043 16.9 2.0 0.55 10.2 0.2 2.3 1 1 1 2 2 2 0 FlxA-like protein CENP-F_leu_zip PF10473.4 gi|352682972|ref|YP_004893496.1| - 0.0044 16.8 10.8 0.22 11.3 2.1 2.7 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMPIT PF07851.8 gi|352682972|ref|YP_004893496.1| - 0.0045 16.1 2.7 0.0089 15.1 1.9 1.5 1 1 0 1 1 1 1 TMPIT-like protein Transcrip_act PF04949.8 gi|352682972|ref|YP_004893496.1| - 0.0051 16.4 14.0 0.04 13.5 4.1 2.3 1 1 1 2 2 2 2 Transcriptional activator Filo_VP35 PF02097.10 gi|352682972|ref|YP_004893496.1| - 0.0053 16.0 1.1 0.09 11.9 0.1 2.0 1 1 1 2 2 2 1 Filoviridae VP35 OmpH PF03938.9 gi|352682972|ref|YP_004893496.1| - 0.0053 16.7 4.2 0.022 14.7 2.9 1.9 1 1 0 1 1 1 1 Outer membrane protein (OmpH-like) XhlA PF10779.4 gi|352682972|ref|YP_004893496.1| - 0.0056 16.5 18.2 0.023 14.5 2.1 2.7 2 1 1 3 3 2 1 Haemolysin XhlA DUF4140 PF13600.1 gi|352682972|ref|YP_004893496.1| - 0.0058 17.0 13.5 1.1 9.7 0.3 3.2 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) YjcZ PF13990.1 gi|352682972|ref|YP_004893496.1| - 0.0061 15.7 1.1 0.02 14.0 0.8 1.7 1 1 1 2 2 2 1 YjcZ-like protein DASH_Dad2 PF08654.5 gi|352682972|ref|YP_004893496.1| - 0.0062 16.5 2.7 0.38 10.7 0.1 3.0 1 1 2 3 3 3 1 DASH complex subunit Dad2 ApoLp-III PF07464.6 gi|352682972|ref|YP_004893496.1| - 0.0062 16.5 8.2 0.007 16.3 3.5 2.4 2 1 0 2 2 1 1 Apolipophorin-III precursor (apoLp-III) FUSC PF04632.7 gi|352682972|ref|YP_004893496.1| - 0.0066 14.9 3.1 0.0081 14.6 2.1 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family MtrB PF05440.7 gi|352682972|ref|YP_004893496.1| - 0.0068 16.4 6.9 3.1 7.8 0.1 4.0 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B HOOK PF05622.7 gi|352682972|ref|YP_004893496.1| - 0.0069 14.2 7.5 0.01 13.7 5.2 1.3 1 0 0 1 1 1 1 HOOK protein PspB PF06667.7 gi|352682972|ref|YP_004893496.1| - 0.0073 16.2 13.9 2.4 8.1 0.6 3.5 1 1 2 3 3 3 0 Phage shock protein B TMCO5 PF14992.1 gi|352682972|ref|YP_004893496.1| - 0.0075 15.4 9.8 0.011 14.9 6.8 1.3 1 0 0 1 1 1 1 TMCO5 family DUF2130 PF09903.4 gi|352682972|ref|YP_004893496.1| - 0.0081 14.9 5.3 0.11 11.1 3.7 2.1 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2130) Spc7 PF08317.6 gi|352682972|ref|YP_004893496.1| - 0.0083 14.8 10.6 0.048 12.3 2.5 2.1 1 1 1 2 2 2 1 Spc7 kinetochore protein SMC_Nse1 PF07574.8 gi|352682972|ref|YP_004893496.1| - 0.0084 15.7 1.3 0.77 9.3 0.1 2.8 1 1 2 3 3 3 0 Nse1 non-SMC component of SMC5-6 complex Phasin PF05597.6 gi|352682972|ref|YP_004893496.1| - 0.0085 15.8 8.0 0.95 9.2 2.2 3.4 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HrpB7 PF09486.5 gi|352682972|ref|YP_004893496.1| - 0.0093 15.9 3.8 0.0093 15.9 2.6 2.6 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) Hemerythrin PF01814.18 gi|352682972|ref|YP_004893496.1| - 0.0095 16.1 7.9 0.29 11.3 1.0 2.4 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain DUF4456 PF14644.1 gi|352682972|ref|YP_004893496.1| - 0.0096 15.1 2.9 2.8 7.0 0.0 3.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4456) Peripla_BP_2 PF01497.13 gi|352682972|ref|YP_004893496.1| - 0.0097 15.0 6.5 0.14 11.2 0.4 2.7 1 1 2 3 3 3 1 Periplasmic binding protein HAP1_N PF04849.8 gi|352682972|ref|YP_004893496.1| - 0.01 14.7 7.5 0.024 13.6 5.2 1.7 1 1 0 1 1 1 0 HAP1 N-terminal conserved region Corona_S2 PF01601.11 gi|352682972|ref|YP_004893496.1| - 0.01 13.9 1.9 0.033 12.3 0.5 1.8 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein DUF4455 PF14643.1 gi|352682972|ref|YP_004893496.1| - 0.011 14.3 10.0 0.016 13.9 6.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) HAUS6_N PF14661.1 gi|352682972|ref|YP_004893496.1| - 0.011 15.0 5.2 0.097 12.0 2.5 2.3 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF1843 PF08898.5 gi|352682972|ref|YP_004893496.1| - 0.012 15.6 0.2 0.037 14.0 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) Filament PF00038.16 gi|352682972|ref|YP_004893496.1| - 0.012 15.1 9.1 0.29 10.5 1.1 2.1 1 1 1 2 2 2 0 Intermediate filament protein DUF4631 PF15450.1 gi|352682972|ref|YP_004893496.1| - 0.012 13.9 10.4 0.015 13.6 7.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) FliJ PF02050.11 gi|352682972|ref|YP_004893496.1| - 0.012 15.6 2.7 0.22 11.5 0.2 2.4 1 1 1 2 2 2 0 Flagellar FliJ protein Fmp27_WPPW PF10359.4 gi|352682972|ref|YP_004893496.1| - 0.013 13.9 6.7 0.011 14.1 2.6 1.8 1 1 2 3 3 3 0 RNA pol II promoter Fmp27 protein domain DUF812 PF05667.6 gi|352682972|ref|YP_004893496.1| - 0.013 14.0 8.7 0.042 12.3 6.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF1110 PF06533.7 gi|352682972|ref|YP_004893496.1| - 0.014 15.2 4.3 9.5 5.9 0.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1110) DUF3540 PF12059.3 gi|352682972|ref|YP_004893496.1| - 0.014 15.0 1.0 0.2 11.2 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3540) SCP-1 PF05483.7 gi|352682972|ref|YP_004893496.1| - 0.014 13.1 8.3 0.017 12.9 5.7 1.1 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) NTR2 PF15458.1 gi|352682972|ref|YP_004893496.1| - 0.016 14.4 6.6 0.73 9.0 0.4 2.5 1 1 2 3 3 3 0 Nineteen complex-related protein 2 Dor1 PF04124.7 gi|352682972|ref|YP_004893496.1| - 0.016 13.6 4.3 0.023 13.1 3.0 1.3 1 0 0 1 1 1 0 Dor1-like family Phage_GPO PF05929.6 gi|352682972|ref|YP_004893496.1| - 0.019 14.2 5.6 0.037 13.2 2.0 1.9 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase AF0941-like PF14591.1 gi|352682972|ref|YP_004893496.1| - 0.019 15.0 10.9 0.045 13.8 2.8 2.7 1 1 1 2 2 2 0 AF0941-like Prominin PF05478.6 gi|352682972|ref|YP_004893496.1| - 0.021 12.4 2.7 0.063 10.8 1.4 1.5 1 1 0 1 1 1 0 Prominin DUF16 PF01519.11 gi|352682972|ref|YP_004893496.1| - 0.022 14.9 7.2 1.3 9.2 5.0 2.6 1 1 0 1 1 1 0 Protein of unknown function DUF16 WEMBL PF05701.6 gi|352682972|ref|YP_004893496.1| - 0.022 13.2 5.8 0.032 12.7 3.7 1.5 1 1 0 1 1 1 0 Weak chloroplast movement under blue light Occludin_ELL PF07303.8 gi|352682972|ref|YP_004893496.1| - 0.022 15.4 7.6 5 7.9 0.1 3.3 2 1 2 4 4 3 0 Occludin homology domain HAUS-augmin3 PF14932.1 gi|352682972|ref|YP_004893496.1| - 0.023 13.8 3.5 0.037 13.1 2.0 1.5 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 YPEB PF14620.1 gi|352682972|ref|YP_004893496.1| - 0.024 13.6 3.8 0.21 10.5 0.4 2.1 1 1 1 2 2 2 0 YpeB sporulation DUF4164 PF13747.1 gi|352682972|ref|YP_004893496.1| - 0.024 14.7 21.3 0.21 11.7 7.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) YlbD_coat PF14071.1 gi|352682972|ref|YP_004893496.1| - 0.025 14.6 1.3 1.5 8.8 0.2 2.7 1 1 2 3 3 3 0 Putative coat protein Dynamitin PF04912.9 gi|352682972|ref|YP_004893496.1| - 0.025 13.3 6.3 0.026 13.3 2.9 1.8 1 1 1 2 2 2 0 Dynamitin APG17 PF04108.7 gi|352682972|ref|YP_004893496.1| - 0.026 13.3 3.6 0.17 10.6 2.3 2.0 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF1515 PF07439.6 gi|352682972|ref|YP_004893496.1| - 0.027 14.2 12.7 0.62 9.8 4.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Acyl-CoA_dh_2 PF08028.6 gi|352682972|ref|YP_004893496.1| - 0.028 14.6 4.7 0.052 13.7 0.4 2.2 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain ADIP PF11559.3 gi|352682972|ref|YP_004893496.1| - 0.029 14.2 7.4 0.63 9.9 0.7 2.2 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DASH_Duo1 PF08651.5 gi|352682972|ref|YP_004893496.1| - 0.029 13.9 4.8 3.2 7.3 0.4 3.3 1 1 1 2 2 2 0 DASH complex subunit Duo1 MRF_C1 PF13887.1 gi|352682972|ref|YP_004893496.1| - 0.03 13.3 17.5 5 6.2 0.7 6.3 1 1 2 4 4 3 0 Myelin gene regulatory factor -C-terminal domain 1 DUF972 PF06156.8 gi|352682972|ref|YP_004893496.1| - 0.03 14.6 6.7 1.2 9.5 3.1 2.8 2 1 0 2 2 1 0 Protein of unknown function (DUF972) DUF2313 PF10076.4 gi|352682972|ref|YP_004893496.1| - 0.03 13.6 0.7 7.5 5.9 0.0 2.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2313) DUF4618 PF15397.1 gi|352682972|ref|YP_004893496.1| - 0.031 13.6 4.7 0.04 13.2 2.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) GldM_N PF12081.3 gi|352682972|ref|YP_004893496.1| - 0.031 13.7 1.2 0.3 10.5 0.4 2.1 1 1 2 3 3 3 0 GldM N-terminal domain Sipho_Gp157 PF05565.6 gi|352682972|ref|YP_004893496.1| - 0.032 13.8 10.1 0.25 10.9 6.5 2.2 1 1 1 2 2 2 0 Siphovirus Gp157 ACCA PF03255.9 gi|352682972|ref|YP_004893496.1| - 0.033 13.7 5.5 0.66 9.5 1.2 2.6 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Sec3_C PF09763.4 gi|352682972|ref|YP_004893496.1| - 0.033 12.3 5.5 0.072 11.2 1.0 2.0 1 1 1 2 2 2 0 Exocyst complex component Sec3 DUF2959 PF11172.3 gi|352682972|ref|YP_004893496.1| - 0.038 13.7 5.5 1.6 8.4 1.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) GP41 PF00517.12 gi|352682972|ref|YP_004893496.1| - 0.038 13.5 1.4 0.28 10.7 0.1 2.2 1 1 1 2 2 2 0 Retroviral envelope protein COG5 PF10392.4 gi|352682972|ref|YP_004893496.1| - 0.04 13.8 4.0 0.23 11.4 1.4 2.1 1 1 1 2 2 2 0 Golgi transport complex subunit 5 LUC7 PF03194.10 gi|352682972|ref|YP_004893496.1| - 0.04 13.4 10.3 0.14 11.6 6.6 2.0 1 1 0 1 1 1 0 LUC7 N_terminus KIP1 PF07765.7 gi|352682972|ref|YP_004893496.1| - 0.04 13.7 4.0 2.6 7.9 0.2 2.4 1 1 1 2 2 2 0 KIP1-like protein CCDC155 PF14662.1 gi|352682972|ref|YP_004893496.1| - 0.04 13.5 8.5 0.055 13.0 5.5 1.4 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 HAUS5 PF14817.1 gi|352682972|ref|YP_004893496.1| - 0.042 12.4 3.2 0.049 12.1 2.2 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Cauli_DNA-bind PF03310.8 gi|352682972|ref|YP_004893496.1| - 0.042 13.6 4.6 0.11 12.3 1.2 2.2 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein DUF869 PF05911.6 gi|352682972|ref|YP_004893496.1| - 0.042 12.0 6.5 0.1 10.8 4.5 1.5 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) TMP_2 PF06791.8 gi|352682972|ref|YP_004893496.1| - 0.043 13.4 0.2 0.2 11.2 0.1 2.0 1 1 0 1 1 1 0 Prophage tail length tape measure protein DUF677 PF05055.7 gi|352682972|ref|YP_004893496.1| - 0.043 12.4 6.4 0.1 11.2 1.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF677) DUF2203 PF09969.4 gi|352682972|ref|YP_004893496.1| - 0.044 13.9 3.6 1.3 9.3 2.3 2.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) APG6 PF04111.7 gi|352682972|ref|YP_004893496.1| - 0.048 12.7 7.1 0.15 11.0 4.5 1.8 1 1 1 2 2 2 0 Autophagy protein Apg6 Rootletin PF15035.1 gi|352682972|ref|YP_004893496.1| - 0.048 13.6 8.9 0.057 13.3 5.8 1.4 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion NYD-SP28 PF14772.1 gi|352682972|ref|YP_004893496.1| - 0.05 13.7 8.9 0.15 12.2 2.9 2.8 1 1 1 2 2 2 0 Sperm tail Bacillus_HBL PF05791.6 gi|352682972|ref|YP_004893496.1| - 0.051 12.9 4.6 0.22 10.8 3.0 1.9 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) PMC2NT PF08066.7 gi|352682972|ref|YP_004893496.1| - 0.056 13.7 5.3 0.67 10.2 2.0 2.4 1 1 0 2 2 2 0 PMC2NT (NUC016) domain TFR_dimer PF04253.10 gi|352682972|ref|YP_004893496.1| - 0.059 12.9 1.3 3.2 7.3 0.1 2.4 1 1 1 2 2 2 0 Transferrin receptor-like dimerisation domain Flagellin_N PF00669.15 gi|352682972|ref|YP_004893496.1| - 0.061 13.1 3.9 0.16 11.7 1.4 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region DUF342 PF03961.8 gi|352682972|ref|YP_004893496.1| - 0.062 11.7 6.5 0.3 9.4 4.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF342) DUF4337 PF14235.1 gi|352682972|ref|YP_004893496.1| - 0.062 13.1 3.5 2.2 8.0 2.3 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) FlaG PF03646.10 gi|352682972|ref|YP_004893496.1| - 0.063 13.4 2.1 6.3 6.9 0.1 2.9 1 1 1 2 2 2 0 FlaG protein DHC_N1 PF08385.7 gi|352682972|ref|YP_004893496.1| - 0.067 11.5 1.9 0.084 11.2 1.3 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 DUF1192 PF06698.6 gi|352682972|ref|YP_004893496.1| - 0.068 12.9 14.3 0.074 12.8 0.5 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1192) Translin PF01997.11 gi|352682972|ref|YP_004893496.1| - 0.072 12.6 7.4 4.3 6.8 0.2 2.9 1 1 1 2 2 2 0 Translin family CCDC-167 PF15188.1 gi|352682972|ref|YP_004893496.1| - 0.073 13.0 13.1 0.71 9.8 0.3 3.6 2 1 2 4 4 4 0 Coiled-coil domain-containing protein 167 BCAS2 PF05700.6 gi|352682972|ref|YP_004893496.1| - 0.074 12.4 2.2 0.46 9.9 0.4 2.3 1 1 1 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) CorA PF01544.13 gi|352682972|ref|YP_004893496.1| - 0.077 12.0 15.2 1.7 7.5 0.3 2.8 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Cast PF10174.4 gi|352682972|ref|YP_004893496.1| - 0.077 11.0 13.6 0.094 10.7 9.4 1.2 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone LMBR1 PF04791.11 gi|352682972|ref|YP_004893496.1| - 0.079 11.5 2.1 0.09 11.3 1.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2317 PF10079.4 gi|352682972|ref|YP_004893496.1| - 0.08 11.5 3.7 0.096 11.2 2.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) ATG16 PF08614.6 gi|352682972|ref|YP_004893496.1| - 0.08 12.7 12.3 0.13 12.0 2.5 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) LOH1CR12 PF10158.4 gi|352682972|ref|YP_004893496.1| - 0.082 12.6 2.5 0.56 9.9 1.5 2.2 1 1 0 1 1 1 0 Tumour suppressor protein DUF1319 PF07028.6 gi|352682972|ref|YP_004893496.1| - 0.082 13.0 8.5 0.4 10.8 1.8 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) Rcd1 PF04078.8 gi|352682972|ref|YP_004893496.1| - 0.083 11.7 0.1 0.27 10.0 0.0 1.7 1 1 1 2 2 1 0 Cell differentiation family, Rcd1-like DUF148 PF02520.12 gi|352682972|ref|YP_004893496.1| - 0.084 12.6 2.0 0.81 9.5 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF148 V-SNARE_C PF12352.3 gi|352682972|ref|YP_004893496.1| - 0.091 12.8 6.4 8.3 6.5 0.1 3.7 2 1 2 4 4 4 0 Snare region anchored in the vesicle membrane C-terminus CobU PF02283.11 gi|352682972|ref|YP_004893496.1| - 0.092 12.1 0.2 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase PEP-utilisers_N PF05524.8 gi|352682972|ref|YP_004893496.1| - 0.097 12.4 10.5 0.98 9.2 0.5 2.9 1 1 2 3 3 3 0 PEP-utilising enzyme, N-terminal HemX PF04375.9 gi|352682972|ref|YP_004893496.1| - 0.1 11.1 5.7 0.3 9.6 3.9 1.8 1 1 0 1 1 1 0 HemX Flagellin_C PF00700.16 gi|352682972|ref|YP_004893496.1| - 0.1 12.7 3.4 4.2 7.6 0.2 2.7 1 1 2 3 3 3 0 Bacterial flagellin C-terminal helical region Syntaxin_2 PF14523.1 gi|352682972|ref|YP_004893496.1| - 0.11 12.5 5.6 0.82 9.7 3.9 2.2 1 1 0 1 1 1 0 Syntaxin-like protein DNA_topoisoIV PF00521.15 gi|352682972|ref|YP_004893496.1| - 0.11 11.2 4.9 0.13 11.0 3.4 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Val_tRNA-synt_C PF10458.4 gi|352682972|ref|YP_004893496.1| - 0.12 12.5 9.7 0.59 10.2 0.2 4.0 2 1 2 4 4 3 0 Valyl tRNA synthetase tRNA binding arm Vip3A_N PF12495.3 gi|352682972|ref|YP_004893496.1| - 0.12 12.0 1.8 0.31 10.7 1.2 1.7 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal Mitofilin PF09731.4 gi|352682972|ref|YP_004893496.1| - 0.12 11.0 6.5 0.5 8.9 4.2 1.8 1 1 1 2 2 2 0 Mitochondrial inner membrane protein DUF4613 PF15390.1 gi|352682972|ref|YP_004893496.1| - 0.12 10.5 1.0 0.14 10.2 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) Snf7 PF03357.16 gi|352682972|ref|YP_004893496.1| - 0.12 11.6 12.4 1.8 7.9 4.8 2.8 1 1 1 2 2 2 0 Snf7 Nup88 PF10168.4 gi|352682972|ref|YP_004893496.1| - 0.13 10.0 5.9 0.16 9.7 4.1 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF1978 PF09321.5 gi|352682972|ref|YP_004893496.1| - 0.14 11.6 5.6 0.53 9.6 3.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1978) DUF4041 PF13250.1 gi|352682972|ref|YP_004893496.1| - 0.14 11.7 2.5 7.4 6.2 0.0 3.1 2 1 2 4 4 3 0 Domain of unknown function (DUF4041) DUF2935 PF11155.3 gi|352682972|ref|YP_004893496.1| - 0.14 12.2 0.7 0.84 9.7 0.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) DUF4201 PF13870.1 gi|352682972|ref|YP_004893496.1| - 0.14 11.5 10.1 0.93 8.9 2.7 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DUF3373 PF11853.3 gi|352682972|ref|YP_004893496.1| - 0.14 10.6 8.4 0.88 8.0 2.3 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) DUF310 PF03750.8 gi|352682972|ref|YP_004893496.1| - 0.15 12.2 6.3 0.48 10.6 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF310) CAP_N PF01213.14 gi|352682972|ref|YP_004893496.1| - 0.15 11.3 0.4 0.27 10.5 0.3 1.5 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF241 PF03087.9 gi|352682972|ref|YP_004893496.1| - 0.15 11.5 5.8 2.8 7.3 0.6 2.2 1 1 1 2 2 2 0 Arabidopsis protein of unknown function TACC PF05010.9 gi|352682972|ref|YP_004893496.1| - 0.16 11.7 4.7 0.46 10.2 3.3 1.8 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) Phage_GP20 PF06810.6 gi|352682972|ref|YP_004893496.1| - 0.16 11.4 9.2 1.8 8.0 5.5 2.4 1 1 1 2 2 2 0 Phage minor structural protein GP20 Tmemb_cc2 PF10267.4 gi|352682972|ref|YP_004893496.1| - 0.16 10.5 5.4 0.32 9.5 3.7 1.6 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF489 PF04356.7 gi|352682972|ref|YP_004893496.1| - 0.16 11.5 1.5 1.4 8.4 1.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF489) DUF2450 PF10475.4 gi|352682972|ref|YP_004893496.1| - 0.17 10.7 4.6 0.86 8.4 3.2 1.9 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) CDC37_N PF03234.9 gi|352682972|ref|YP_004893496.1| - 0.18 12.1 7.8 0.22 11.8 4.6 1.6 1 1 1 2 2 2 0 Cdc37 N terminal kinase binding THOC7 PF05615.8 gi|352682972|ref|YP_004893496.1| - 0.18 12.0 9.4 0.75 10.0 1.8 2.2 1 1 1 2 2 2 0 Tho complex subunit 7 Med9 PF07544.8 gi|352682972|ref|YP_004893496.1| - 0.19 11.5 11.6 6.1 6.6 0.3 3.1 1 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 bZIP_2 PF07716.10 gi|352682972|ref|YP_004893496.1| - 0.19 11.5 8.1 5.8 6.8 0.2 3.9 2 1 1 4 4 4 0 Basic region leucine zipper DUF1351 PF07083.6 gi|352682972|ref|YP_004893496.1| - 0.19 11.3 7.0 0.55 9.8 4.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1351) DUF2937 PF11157.3 gi|352682972|ref|YP_004893496.1| - 0.2 11.0 2.2 1.1 8.5 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) Osmo_CC PF08946.5 gi|352682972|ref|YP_004893496.1| - 0.21 11.6 12.1 4.4 7.4 0.0 4.3 1 1 3 4 4 4 0 Osmosensory transporter coiled coil UPF0184 PF03670.8 gi|352682972|ref|YP_004893496.1| - 0.21 11.7 13.2 3.1 8.0 0.7 3.3 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0184) DUF607 PF04678.8 gi|352682972|ref|YP_004893496.1| - 0.23 11.3 5.4 4.5 7.1 1.1 2.9 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Fungal_trans_2 PF11951.3 gi|352682972|ref|YP_004893496.1| - 0.26 9.8 2.9 1.2 7.6 2.0 2.0 1 1 0 1 1 1 0 Fungal specific transcription factor domain DUF4635 PF15466.1 gi|352682972|ref|YP_004893496.1| - 0.27 10.5 3.0 1 8.6 0.2 2.7 1 1 3 4 4 3 0 Domain of unknown function (DUF4635) Spc24 PF08286.6 gi|352682972|ref|YP_004893496.1| - 0.28 10.8 8.6 2.1e+02 1.6 5.9 2.9 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 KfrA_N PF11740.3 gi|352682972|ref|YP_004893496.1| - 0.3 11.5 8.3 10 6.5 1.2 3.8 2 1 1 3 3 2 0 Plasmid replication region DNA-binding N-term DUF1020 PF06255.8 gi|352682972|ref|YP_004893496.1| - 0.32 10.1 3.2 0.8 8.8 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1020) AAA_11 PF13086.1 gi|352682972|ref|YP_004893496.1| - 0.33 10.5 2.9 0.49 9.9 2.0 1.3 1 0 0 1 1 1 0 AAA domain KxDL PF10241.4 gi|352682972|ref|YP_004893496.1| - 0.33 10.8 7.2 0.32 10.9 1.3 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein KLRAQ PF10205.4 gi|352682972|ref|YP_004893496.1| - 0.33 10.9 6.1 1.5 8.8 1.2 2.4 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein Mod_r PF07200.8 gi|352682972|ref|YP_004893496.1| - 0.35 10.7 4.6 0.71 9.7 1.8 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Lipoprotein_7 PF01540.11 gi|352682972|ref|YP_004893496.1| - 0.37 9.8 5.7 0.53 9.3 3.7 1.5 1 1 0 1 1 1 0 Adhesin lipoprotein Med4 PF10018.4 gi|352682972|ref|YP_004893496.1| - 0.37 10.1 10.6 0.65 9.3 1.6 2.4 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 SNARE PF05739.14 gi|352682972|ref|YP_004893496.1| - 0.39 10.4 17.4 2.7 7.7 0.8 3.8 2 1 1 3 3 2 0 SNARE domain PspA_IM30 PF04012.7 gi|352682972|ref|YP_004893496.1| - 0.39 10.0 8.4 1.8 7.8 5.9 2.2 1 1 0 1 1 1 0 PspA/IM30 family Mo25 PF08569.6 gi|352682972|ref|YP_004893496.1| - 0.4 9.6 5.0 1.9 7.4 0.5 2.1 1 1 1 2 2 2 0 Mo25-like Serine_rich PF08824.5 gi|352682972|ref|YP_004893496.1| - 0.41 10.3 9.9 0.28 10.8 4.2 2.3 2 1 1 3 3 2 0 Serine rich protein interaction domain CR6_interact PF10147.4 gi|352682972|ref|YP_004893496.1| - 0.47 9.7 5.6 0.8 8.9 3.9 1.4 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 MutS_IV PF05190.13 gi|352682972|ref|YP_004893496.1| - 0.48 10.6 9.0 11 6.2 0.3 3.6 1 1 2 3 3 3 0 MutS family domain IV DUF848 PF05852.6 gi|352682972|ref|YP_004893496.1| - 0.48 10.2 8.1 1.8 8.4 5.5 2.1 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) MerR-DNA-bind PF09278.6 gi|352682972|ref|YP_004893496.1| - 0.5 10.8 19.5 8.1 6.9 3.6 4.0 1 1 1 2 2 2 0 MerR, DNA binding V-SNARE PF05008.10 gi|352682972|ref|YP_004893496.1| - 0.51 10.5 9.2 6.6 6.9 0.8 3.2 1 1 2 3 3 3 0 Vesicle transport v-SNARE protein N-terminus YvrJ PF12841.2 gi|352682972|ref|YP_004893496.1| - 0.52 9.6 3.6 11 5.4 0.2 3.5 3 0 0 3 3 3 0 YvrJ protein family Nsp1_C PF05064.8 gi|352682972|ref|YP_004893496.1| - 0.52 9.9 4.1 3.1 7.4 1.2 2.2 1 1 1 2 2 2 0 Nsp1-like C-terminal region zf-ZPR1 PF03367.8 gi|352682972|ref|YP_004893496.1| - 0.54 9.4 4.2 6.2 5.9 0.2 2.4 1 1 1 2 2 2 0 ZPR1 zinc-finger domain DUF1465 PF07323.7 gi|352682972|ref|YP_004893496.1| - 0.57 9.7 7.1 1.6 8.2 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) Ran-binding PF05508.6 gi|352682972|ref|YP_004893496.1| - 0.59 8.9 6.8 1.2 7.9 4.7 1.5 1 1 0 1 1 1 0 RanGTP-binding protein DUF3422 PF11902.3 gi|352682972|ref|YP_004893496.1| - 0.6 8.9 6.0 2.5 6.8 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3422) LPP PF04728.8 gi|352682972|ref|YP_004893496.1| - 0.64 9.8 9.2 7.5 6.4 2.3 3.0 2 1 1 3 3 3 0 Lipoprotein leucine-zipper Tho2 PF11262.3 gi|352682972|ref|YP_004893496.1| - 0.7 8.8 3.1 1.4 7.8 2.0 1.7 1 1 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Zw10 PF06248.8 gi|352682972|ref|YP_004893496.1| - 0.71 7.9 5.4 0.81 7.7 2.9 1.6 1 1 0 1 1 1 0 Centromere/kinetochore Zw10 CK2S PF15011.1 gi|352682972|ref|YP_004893496.1| - 0.73 9.5 7.0 8.6 6.1 0.3 3.1 1 1 2 3 3 3 0 Casein Kinase 2 substrate YscO PF07321.7 gi|352682972|ref|YP_004893496.1| - 0.78 9.5 9.2 1.9 8.3 1.3 2.6 1 1 1 2 2 2 0 Type III secretion protein YscO Phage_Mu_Gam PF07352.7 gi|352682972|ref|YP_004893496.1| - 0.78 9.2 7.9 1.7 8.1 0.6 2.8 1 1 2 3 3 3 0 Bacteriophage Mu Gam like protein HSCB_C PF07743.8 gi|352682972|ref|YP_004893496.1| - 0.79 10.2 11.0 1.8e+03 -0.6 7.6 3.4 1 1 0 1 1 0 0 HSCB C-terminal oligomerisation domain Vps53_N PF04100.7 gi|352682972|ref|YP_004893496.1| - 0.81 8.3 7.4 2.4 6.8 5.1 1.8 1 1 0 1 1 1 0 Vps53-like, N-terminal Tup_N PF08581.5 gi|352682972|ref|YP_004893496.1| - 0.81 9.9 5.2 0.64 10.2 0.4 2.5 1 1 0 2 2 2 0 Tup N-terminal BBP1_C PF15272.1 gi|352682972|ref|YP_004893496.1| - 0.88 9.0 8.8 3.9 6.9 5.5 1.9 1 1 0 1 1 1 0 Spindle pole body component BBP1, C-terminal Ribosomal_S30AE PF02482.14 gi|352682972|ref|YP_004893496.1| - 0.9 10.0 8.8 3.6 8.0 1.9 3.3 1 1 1 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein MIF4G_like_2 PF09090.6 gi|352682972|ref|YP_004893496.1| - 1.1 8.4 4.8 2.1 7.5 3.1 1.8 1 1 0 1 1 1 0 MIF4G like KH_5 PF13184.1 gi|352682972|ref|YP_004893496.1| - 1.2 9.0 6.3 61 3.5 4.3 3.0 1 1 0 1 1 1 0 NusA-like KH domain ING PF12998.2 gi|352682972|ref|YP_004893496.1| - 1.3 9.3 7.7 36 4.7 5.3 2.4 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding DUF2205 PF10224.4 gi|352682972|ref|YP_004893496.1| - 1.3 8.6 15.6 6.1 6.4 0.6 4.6 1 1 4 5 5 4 0 Predicted coiled-coil protein (DUF2205) GrpE PF01025.14 gi|352682972|ref|YP_004893496.1| - 1.3 8.5 9.6 27 4.2 6.3 2.5 1 1 0 1 1 1 0 GrpE Med28 PF11594.3 gi|352682972|ref|YP_004893496.1| - 1.4 9.1 6.1 1.1 9.5 0.9 2.2 1 1 1 2 2 2 0 Mediator complex subunit 28 DUF641 PF04859.7 gi|352682972|ref|YP_004893496.1| - 1.5 8.5 5.0 1.1 8.9 1.6 2.1 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) DUF883 PF05957.8 gi|352682972|ref|YP_004893496.1| - 1.7 9.0 10.5 4.5 7.7 3.9 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Baculo_gp64 PF03273.8 gi|352682972|ref|YP_004893496.1| - 1.7 6.7 3.8 2 6.5 0.2 2.0 1 1 1 2 2 2 0 Baculovirus gp64 envelope glycoprotein family DUF1732 PF08340.6 gi|352682972|ref|YP_004893496.1| - 1.8 8.4 7.4 3.7 7.4 0.2 2.6 2 1 1 3 3 2 0 Domain of unknown function (DUF1732) NIT PF08376.5 gi|352682972|ref|YP_004893496.1| - 1.8 8.0 8.4 0.98 8.8 3.0 2.0 1 1 1 2 2 2 0 Nitrate and nitrite sensing DUF3349 PF11829.3 gi|352682972|ref|YP_004893496.1| - 1.9 8.9 6.3 3 8.3 0.4 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3349) DUF4404 PF14357.1 gi|352682972|ref|YP_004893496.1| - 2 8.8 8.2 5.1 7.5 1.4 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF1612 PF07756.7 gi|352682972|ref|YP_004893496.1| - 2.1 8.4 7.7 1.2 9.2 0.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1612) Phage_lysis PF03245.8 gi|352682972|ref|YP_004893496.1| - 2.1 8.3 10.8 5.1 7.0 1.0 3.0 1 1 1 2 2 2 0 Bacteriophage Rz lysis protein CHD5 PF04420.9 gi|352682972|ref|YP_004893496.1| - 2.6 7.6 6.4 16 5.1 1.0 2.8 2 1 0 2 2 2 0 CHD5-like protein USP8_interact PF08941.5 gi|352682972|ref|YP_004893496.1| - 2.6 7.3 9.5 11 5.3 0.2 3.0 1 1 2 3 3 3 0 USP8 interacting SPX PF03105.14 gi|352682972|ref|YP_004893496.1| - 3.2 7.4 5.7 9.1 5.9 3.9 1.9 1 1 0 1 1 1 0 SPX domain DUF4083 PF13314.1 gi|352682972|ref|YP_004893496.1| - 3.7 7.4 5.5 2.6 7.9 0.1 2.8 2 1 1 3 3 2 0 Domain of unknown function (DUF4083) ECM11 PF15463.1 gi|352682972|ref|YP_004893496.1| - 3.8 7.8 8.4 2.5 8.3 0.4 2.7 1 1 0 2 2 2 0 Extracellular mutant protein 11 MutS_III PF05192.13 gi|352682972|ref|YP_004893496.1| - 4.5 7.0 8.2 11 5.7 5.7 1.7 1 1 0 1 1 1 0 MutS domain III HK97-gp10_like PF04883.7 gi|352682972|ref|YP_004893496.1| - 4.8 8.1 12.1 19 6.2 0.1 3.9 1 1 3 4 4 4 0 Bacteriophage HK97-gp10, putative tail-component YtxH PF12732.2 gi|352682972|ref|YP_004893496.1| - 4.8 7.6 8.2 3e+02 1.8 5.7 3.1 1 1 0 1 1 1 0 YtxH-like protein DUF3186 PF11382.3 gi|352682972|ref|YP_004893496.1| - 5 6.1 7.9 8.1 5.4 0.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3186) DUF2951 PF11166.3 gi|352682972|ref|YP_004893496.1| - 5.4 6.9 14.5 1.4 8.8 5.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) DUF4577 PF15145.1 gi|352682972|ref|YP_004893496.1| - 6.7 6.6 10.0 9.6 6.1 0.5 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4577) Synaptobrevin PF00957.16 gi|352682972|ref|YP_004893496.1| - 7.3 6.2 9.9 50 3.5 2.3 3.2 1 1 2 3 3 3 0 Synaptobrevin Med7 PF05983.6 gi|352682972|ref|YP_004893496.1| - 7.4 6.3 6.0 43 3.8 0.1 2.9 1 1 2 3 3 3 0 MED7 protein DUF3772 PF12607.3 gi|352682972|ref|YP_004893496.1| - 8.7 6.0 10.0 5.4 6.7 0.4 3.9 2 2 0 3 3 2 0 Protein of unknown function (DUF3772) HSP20 PF00011.16 gi|352682973|ref|YP_004893497.1| - 2.6e-12 46.5 0.2 9.2e-11 41.5 0.1 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DUF2122 PF09895.4 gi|352682974|ref|YP_004893498.1| - 1.8e-25 89.1 0.0 2.4e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) PNP_UDP_1 PF01048.15 gi|352682976|ref|YP_004893500.1| - 5.5e-42 143.3 0.3 6.8e-42 143.0 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MtN3_slv PF03083.11 gi|352682977|ref|YP_004893501.1| - 0.0054 16.5 0.0 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.6 gi|352682977|ref|YP_004893501.1| - 0.048 13.5 0.1 0.056 13.3 0.1 1.3 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain GHMP_kinases_N PF00288.21 gi|352682978|ref|YP_004893502.1| - 1.3e-13 50.8 1.2 2.5e-13 49.8 0.8 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|352682978|ref|YP_004893502.1| - 2.5e-08 33.9 0.1 6.3e-08 32.7 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal Cache_1 PF02743.13 gi|352682978|ref|YP_004893502.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 Cache domain Ribosomal_L10 PF00466.15 gi|352682979|ref|YP_004893503.1| - 4.7e-18 64.9 0.0 8.9e-18 64.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|352682979|ref|YP_004893503.1| - 0.00074 19.8 8.4 0.00074 19.8 5.8 2.1 2 0 0 2 2 2 1 60s Acidic ribosomal protein Cloacin PF03515.9 gi|352682979|ref|YP_004893503.1| - 0.035 13.3 0.1 0.051 12.7 0.1 1.2 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain 7TMR-HDED PF07697.6 gi|352682979|ref|YP_004893503.1| - 0.058 13.1 5.4 0.1 12.3 0.2 2.9 3 0 0 3 3 3 0 7TM-HD extracellular Ribosomal_L1 PF00687.16 gi|352682980|ref|YP_004893504.1| - 9.3e-39 133.0 0.0 1.1e-38 132.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|352682981|ref|YP_004893505.1| - 1.9e-18 66.3 0.2 3.5e-18 65.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain EAL PF00563.15 gi|352682981|ref|YP_004893505.1| - 0.05 13.0 0.0 0.069 12.6 0.0 1.1 1 0 0 1 1 1 0 EAL domain Ribosomal_S10 PF00338.17 gi|352682981|ref|YP_004893505.1| - 0.1 12.4 0.0 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S10p/S20e Spt5-NGN PF03439.8 gi|352682982|ref|YP_004893506.1| - 1e-16 60.4 0.4 1.5e-16 59.8 0.3 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|352682982|ref|YP_004893506.1| - 0.00071 19.1 0.9 0.0021 17.7 0.6 1.9 1 0 0 1 1 1 1 KOW motif DUF3753 PF12575.3 gi|352682983|ref|YP_004893507.1| - 0.22 11.3 3.6 0.15 11.8 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) BacteriocIIc_cy PF12173.3 gi|352682983|ref|YP_004893507.1| - 0.23 11.5 1.9 0.34 10.9 1.3 1.2 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like SKG6 PF08693.5 gi|352682983|ref|YP_004893507.1| - 0.34 10.2 0.1 0.34 10.2 0.1 1.8 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF3671 PF12420.3 gi|352682983|ref|YP_004893507.1| - 0.48 10.4 2.6 0.69 9.9 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function SRP54 PF00448.17 gi|352682984|ref|YP_004893508.1| - 5.8e-66 221.6 0.0 7.4e-66 221.3 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|352682984|ref|YP_004893508.1| - 1.1e-11 44.6 0.3 2.1e-11 43.7 0.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|352682984|ref|YP_004893508.1| - 1.8e-05 24.9 0.0 8.9e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|352682984|ref|YP_004893508.1| - 0.00015 21.4 0.1 0.00032 20.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352682984|ref|YP_004893508.1| - 0.00026 20.7 1.6 0.0013 18.4 0.1 2.3 1 1 1 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|352682984|ref|YP_004893508.1| - 0.00089 19.1 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|352682984|ref|YP_004893508.1| - 0.0048 16.3 0.0 0.01 15.2 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|352682984|ref|YP_004893508.1| - 0.0083 15.5 0.2 0.057 12.8 0.2 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|352682984|ref|YP_004893508.1| - 0.027 13.9 0.1 0.072 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|352682984|ref|YP_004893508.1| - 0.027 14.1 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|352682984|ref|YP_004893508.1| - 0.032 13.8 0.0 0.055 13.1 0.0 1.6 1 1 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|352682984|ref|YP_004893508.1| - 0.034 13.6 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Peripla_BP_4 PF13407.1 gi|352682984|ref|YP_004893508.1| - 0.047 13.0 0.0 1.2 8.4 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein domain AAA_28 PF13521.1 gi|352682984|ref|YP_004893508.1| - 0.067 13.1 0.1 0.24 11.3 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|352682984|ref|YP_004893508.1| - 0.077 12.3 1.7 2.5 7.4 0.2 3.0 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|352682984|ref|YP_004893508.1| - 0.079 13.2 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|352682984|ref|YP_004893508.1| - 0.082 12.6 0.0 3.2 7.4 0.0 2.5 1 1 0 1 1 1 0 NTPase Pribosyltran_N PF13793.1 gi|352682984|ref|YP_004893508.1| - 0.085 12.6 0.0 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 N-terminal domain of ribose phosphate pyrophosphokinase ABC_tran PF00005.22 gi|352682984|ref|YP_004893508.1| - 0.1 12.9 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Prefoldin PF02996.12 gi|352682985|ref|YP_004893509.1| - 1.5e-20 73.0 0.5 2.2e-20 72.5 0.2 1.3 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|352682985|ref|YP_004893509.1| - 5.8e-06 26.0 2.5 0.00049 19.8 0.1 2.1 1 1 1 2 2 2 2 Prefoldin subunit PspA_IM30 PF04012.7 gi|352682985|ref|YP_004893509.1| - 0.00028 20.3 1.6 0.095 12.0 0.1 2.1 2 0 0 2 2 2 2 PspA/IM30 family DUF465 PF04325.8 gi|352682985|ref|YP_004893509.1| - 0.002 17.7 0.2 0.0044 16.6 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF465) Bacillus_HBL PF05791.6 gi|352682985|ref|YP_004893509.1| - 0.005 16.2 0.9 1.2 8.4 0.0 2.1 2 0 0 2 2 2 2 Bacillus haemolytic enterotoxin (HBL) Seryl_tRNA_N PF02403.17 gi|352682985|ref|YP_004893509.1| - 0.013 15.4 3.3 0.23 11.4 0.1 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Tektin PF03148.9 gi|352682985|ref|YP_004893509.1| - 0.027 13.0 3.7 0.5 8.8 0.1 2.0 2 0 0 2 2 2 0 Tektin family BLOC1_2 PF10046.4 gi|352682985|ref|YP_004893509.1| - 0.027 14.6 1.7 2.1 8.5 0.2 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.6 gi|352682985|ref|YP_004893509.1| - 0.037 12.7 1.7 3.3 6.2 0.1 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein IFT57 PF10498.4 gi|352682985|ref|YP_004893509.1| - 0.051 12.3 0.3 0.89 8.2 0.0 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Sec5 PF15469.1 gi|352682985|ref|YP_004893509.1| - 0.067 12.9 0.1 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Exocyst complex component Sec5 IncA PF04156.9 gi|352682985|ref|YP_004893509.1| - 0.12 12.0 4.5 0.29 10.7 0.4 2.0 2 0 0 2 2 2 0 IncA protein DASH_Dad3 PF08656.5 gi|352682985|ref|YP_004893509.1| - 0.2 11.3 3.6 0.47 10.1 0.4 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad3 Vps51 PF08700.6 gi|352682985|ref|YP_004893509.1| - 1.1 9.1 5.0 15 5.5 0.3 2.6 2 1 0 2 2 2 0 Vps51/Vps67 Ribosomal_L18ae PF01775.12 gi|352682986|ref|YP_004893510.1| - 9.4e-08 31.9 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|352682987|ref|YP_004893511.1| - 1.5e-67 226.5 4.4 1.8e-67 226.3 3.0 1.0 1 0 0 1 1 1 1 eIF-6 family Oxidored_q4 PF00507.14 gi|352682988|ref|YP_004893512.1| - 0.00032 20.4 0.1 0.00078 19.2 0.0 1.8 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3595 PF12166.3 gi|352682988|ref|YP_004893512.1| - 0.0089 14.8 0.0 0.0089 14.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3595) ABC2_membrane_4 PF12730.2 gi|352682988|ref|YP_004893512.1| - 0.011 14.9 2.2 0.013 14.7 1.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein OppC_N PF12911.2 gi|352682988|ref|YP_004893512.1| - 0.012 15.0 1.7 0.23 10.8 0.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC2_membrane_3 PF12698.2 gi|352682988|ref|YP_004893512.1| - 0.025 13.6 1.7 0.028 13.4 1.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2910 PF11139.3 gi|352682988|ref|YP_004893512.1| - 0.032 13.3 4.9 0.044 12.9 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2910) FtsX PF02687.16 gi|352682988|ref|YP_004893512.1| - 0.042 13.6 0.2 0.042 13.6 0.1 2.1 2 0 0 2 2 2 0 FtsX-like permease family MFS_1 PF07690.11 gi|352682988|ref|YP_004893512.1| - 0.084 11.5 3.6 0.13 10.9 2.5 1.3 1 1 0 1 1 1 0 Major Facilitator Superfamily MttA_Hcf106 PF02416.11 gi|352682988|ref|YP_004893512.1| - 0.16 11.1 1.4 0.26 10.4 0.9 1.4 1 0 0 1 1 1 0 mttA/Hcf106 family PRA1 PF03208.14 gi|352682988|ref|YP_004893512.1| - 0.41 9.9 2.4 0.77 9.0 1.7 1.5 1 1 0 1 1 1 0 PRA1 family protein TMEM191C PF15194.1 gi|352682988|ref|YP_004893512.1| - 0.52 10.2 2.9 7.5 6.4 0.2 2.1 2 0 0 2 2 2 0 TMEM191C family FixQ PF05545.6 gi|352682988|ref|YP_004893512.1| - 2.5 7.8 5.1 1.3 8.7 0.1 2.3 2 1 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ EamA PF00892.15 gi|352682989|ref|YP_004893513.1| - 6.2e-17 61.8 29.7 2.5e-13 50.1 7.1 2.7 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|352682989|ref|YP_004893513.1| - 0.22 11.7 27.1 0.044 13.9 5.2 3.1 2 2 1 3 3 3 0 Multidrug resistance efflux transporter CTP_synth_N PF06418.9 gi|352682990|ref|YP_004893514.1| - 1.5e-120 401.4 0.0 2e-120 401.0 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|352682990|ref|YP_004893514.1| - 1.4e-48 164.9 0.0 2.9e-48 163.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|352682990|ref|YP_004893514.1| - 2.6e-09 36.8 0.0 5.6e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|352682990|ref|YP_004893514.1| - 1.1e-05 25.0 0.0 1.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Ribosomal_S14 PF00253.16 gi|352682991|ref|YP_004893515.1| - 1.1e-16 59.9 6.8 1.1e-16 59.8 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF1451 PF07295.6 gi|352682991|ref|YP_004893515.1| - 0.013 15.3 0.1 0.014 15.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-FPG_IleRS PF06827.9 gi|352682991|ref|YP_004893515.1| - 0.024 14.2 5.5 0.041 13.5 3.1 1.8 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-HYPF PF07503.7 gi|352682991|ref|YP_004893515.1| - 0.31 10.4 7.4 1.7 8.1 1.2 2.1 2 0 0 2 2 2 0 HypF finger zf-dskA_traR PF01258.12 gi|352682991|ref|YP_004893515.1| - 0.36 10.6 4.1 3.1 7.6 0.5 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger TF_Zn_Ribbon PF08271.7 gi|352682991|ref|YP_004893515.1| - 1.1 8.6 3.1 0.64 9.3 0.2 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding Ribosomal_S8 PF00410.14 gi|352682992|ref|YP_004893516.1| - 2.2e-25 88.9 0.0 2.9e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 DUF429 PF04250.8 gi|352682993|ref|YP_004893517.1| - 1.2e-29 103.0 1.5 7.3e-29 100.5 1.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF429) Resolvase PF00239.16 gi|352682994|ref|YP_004893518.1| - 1.1e-34 119.2 0.0 1.6e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Sigma70_r4 PF04545.11 gi|352682994|ref|YP_004893518.1| - 0.00058 19.1 3.0 0.0022 17.2 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 zf-ribbon_3 PF13248.1 gi|352682994|ref|YP_004893518.1| - 0.0021 17.1 1.6 0.057 12.6 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352682994|ref|YP_004893518.1| - 0.0033 16.8 1.5 0.53 9.8 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain HTH_23 PF13384.1 gi|352682994|ref|YP_004893518.1| - 0.012 15.2 0.4 0.039 13.6 0.1 2.0 1 1 1 2 2 2 0 Homeodomain-like domain Complex1_LYR PF05347.10 gi|352682994|ref|YP_004893518.1| - 0.018 14.8 0.0 0.059 13.1 0.0 2.0 1 0 0 1 1 1 0 Complex 1 protein (LYR family) DZR PF12773.2 gi|352682994|ref|YP_004893518.1| - 0.023 14.5 0.2 0.039 13.7 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|352682994|ref|YP_004893518.1| - 0.023 13.8 0.5 0.054 12.7 0.4 1.7 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|352682994|ref|YP_004893518.1| - 0.045 13.4 0.4 3.5 7.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|352682994|ref|YP_004893518.1| - 0.046 13.3 0.4 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|352682994|ref|YP_004893518.1| - 0.048 13.6 0.4 3.6 7.6 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain DpnD-PcfM PF14207.1 gi|352682994|ref|YP_004893518.1| - 0.076 12.7 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 DpnD/PcfM-like protein FaeA PF04703.7 gi|352682994|ref|YP_004893518.1| - 0.1 12.8 0.1 0.27 11.4 0.0 1.8 1 1 0 1 1 1 0 FaeA-like protein zf-RING_3 PF14369.1 gi|352682994|ref|YP_004893518.1| - 0.1 12.5 0.2 3.5 7.7 0.0 2.4 2 0 0 2 2 2 0 zinc-finger HTH_38 PF13936.1 gi|352682994|ref|YP_004893518.1| - 0.12 11.9 0.1 0.34 10.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|352682994|ref|YP_004893518.1| - 0.12 12.3 0.3 0.35 10.9 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain zinc-ribbons_6 PF07191.7 gi|352682994|ref|YP_004893518.1| - 0.15 11.8 0.2 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_KTR PF14205.1 gi|352682994|ref|YP_004893518.1| - 0.18 11.2 1.5 0.75 9.2 1.0 1.9 1 1 0 1 1 1 0 Cysteine-rich KTR UPF0547 PF10571.4 gi|352682994|ref|YP_004893518.1| - 0.32 10.7 3.4 4.4 7.0 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|352682994|ref|YP_004893518.1| - 0.8 9.5 2.8 26 4.6 1.9 2.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Pribosyltran PF00156.22 gi|352682995|ref|YP_004893519.1| - 3.7e-22 78.3 0.3 4.9e-22 77.9 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|352682995|ref|YP_004893519.1| - 0.01 15.0 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Ribosomal_L32e PF01655.13 gi|352682996|ref|YP_004893520.1| - 3.1e-37 127.0 0.1 4.4e-37 126.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|352682997|ref|YP_004893521.1| - 5.1e-44 149.6 9.2 5.7e-44 149.4 6.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF4019 PF13211.1 gi|352682997|ref|YP_004893521.1| - 0.17 12.1 0.0 0.17 12.1 0.0 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4019) HTH_24 PF13412.1 gi|352682997|ref|YP_004893521.1| - 0.47 9.8 2.9 3.3 7.1 0.2 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding CCER1 PF15482.1 gi|352682997|ref|YP_004893521.1| - 0.98 9.0 5.8 1.2 8.7 4.0 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing glutamate-rich protein family 1 Ribosomal_L18p PF00861.17 gi|352682998|ref|YP_004893522.1| - 5.8e-32 110.4 0.1 8.4e-32 109.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|352682998|ref|YP_004893522.1| - 5.2e-16 58.9 1.5 8.2e-16 58.3 1.1 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Pyr_redox_2 PF07992.9 gi|352682999|ref|YP_004893523.1| - 3e-08 33.7 0.0 9.5e-08 32.1 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|352682999|ref|YP_004893523.1| - 1.4e-06 28.6 0.1 0.011 16.1 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352682999|ref|YP_004893523.1| - 0.011 15.4 0.8 0.69 9.6 0.1 2.4 1 1 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|352682999|ref|YP_004893523.1| - 0.013 14.1 0.1 0.022 13.4 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase DAO PF01266.19 gi|352682999|ref|YP_004893523.1| - 0.021 13.7 1.3 1 8.1 0.6 2.3 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|352682999|ref|YP_004893523.1| - 0.033 14.2 0.3 0.065 13.2 0.2 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF1641 PF07849.6 gi|352683000|ref|YP_004893524.1| - 3.2e-16 58.6 0.2 7.9e-16 57.3 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Apolipoprotein PF01442.13 gi|352683000|ref|YP_004893524.1| - 0.022 14.2 0.5 0.067 12.7 0.5 1.5 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain HisKA PF00512.20 gi|352683000|ref|YP_004893524.1| - 0.05 13.6 0.2 0.14 12.1 0.2 1.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Sec2p PF06428.6 gi|352683000|ref|YP_004893524.1| - 0.15 11.9 1.1 0.23 11.3 0.8 1.3 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p PEPcase_2 PF14010.1 gi|352683001|ref|YP_004893525.1| - 2.8e-118 395.3 0.0 4.9e-118 394.5 0.0 1.4 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|352683001|ref|YP_004893525.1| - 0.00012 20.1 0.0 0.00016 19.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase EamA PF00892.15 gi|352683002|ref|YP_004893526.1| - 1.5e-22 79.9 37.5 2.8e-12 46.7 9.9 2.5 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|352683002|ref|YP_004893526.1| - 0.23 11.6 38.9 0.03 14.4 7.9 3.8 1 1 1 3 3 3 0 Multidrug resistance efflux transporter DUF296 PF03479.10 gi|352683003|ref|YP_004893527.1| - 5.3e-21 74.4 0.0 5.7e-21 74.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) Xan_ur_permease PF00860.15 gi|352683004|ref|YP_004893528.1| - 1.2e-22 79.9 55.0 9.3e-22 77.0 36.1 2.5 2 1 0 2 2 2 1 Permease family NTP_transf_3 PF12804.2 gi|352683005|ref|YP_004893529.1| - 2.6e-19 69.8 0.2 5.2e-19 68.8 0.1 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain ParBc PF02195.13 gi|352683005|ref|YP_004893529.1| - 0.019 15.0 0.1 0.045 13.8 0.0 1.7 1 1 0 1 1 1 0 ParB-like nuclease domain IspD PF01128.14 gi|352683005|ref|YP_004893529.1| - 0.06 12.8 0.0 0.45 9.9 0.0 2.2 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CobA_CobO_BtuR PF02572.10 gi|352683006|ref|YP_004893530.1| - 5.7e-34 117.2 0.1 2.5e-32 111.8 0.1 2.0 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YmdB PF13277.1 gi|352683006|ref|YP_004893530.1| - 0.066 12.2 0.0 0.16 10.9 0.0 1.6 1 1 1 2 2 2 0 YmdB-like protein IstB_IS21 PF01695.12 gi|352683006|ref|YP_004893530.1| - 0.1 11.9 1.2 2 7.8 0.0 2.1 1 1 1 2 2 2 0 IstB-like ATP binding protein DBI_PRT PF02277.12 gi|352683007|ref|YP_004893531.1| - 2.1e-29 102.6 1.0 3.1e-29 102.1 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase Pyr_redox_2 PF07992.9 gi|352683008|ref|YP_004893532.1| - 2.4e-10 40.6 3.6 2.7e-09 37.1 2.5 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|352683008|ref|YP_004893532.1| - 7.4e-06 25.1 1.4 0.0014 17.5 0.1 2.5 2 1 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|352683008|ref|YP_004893532.1| - 8.3e-06 26.1 5.1 0.04 14.3 0.8 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|352683008|ref|YP_004893532.1| - 0.00015 21.5 1.1 0.0061 16.3 0.0 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|352683008|ref|YP_004893532.1| - 0.0014 18.5 0.2 0.0039 17.1 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|352683008|ref|YP_004893532.1| - 0.0051 15.7 0.0 0.0092 14.9 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|352683008|ref|YP_004893532.1| - 0.0072 15.0 0.2 0.013 14.1 0.1 1.4 1 0 0 1 1 1 1 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|352683008|ref|YP_004893532.1| - 0.009 14.8 0.1 0.029 13.2 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|352683008|ref|YP_004893532.1| - 0.052 13.6 2.8 0.98 9.4 0.7 2.9 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|352683008|ref|YP_004893532.1| - 0.06 13.6 0.1 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|352683008|ref|YP_004893532.1| - 0.083 11.7 0.1 0.22 10.4 0.0 1.7 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|352683008|ref|YP_004893532.1| - 0.098 11.1 0.9 0.12 10.8 0.1 1.4 2 0 0 2 2 2 0 HI0933-like protein Shikimate_DH PF01488.15 gi|352683008|ref|YP_004893532.1| - 0.15 12.1 0.7 0.3 11.1 0.5 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Aminotran_1_2 PF00155.16 gi|352683009|ref|YP_004893533.1| - 6.9e-20 71.2 0.0 3.1e-19 69.1 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.10 gi|352683010|ref|YP_004893534.1| - 8.8e-35 120.3 1.5 1.1e-34 120.0 1.0 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF77 PF01910.12 gi|352683011|ref|YP_004893535.1| - 9.3e-25 86.1 0.1 1e-24 85.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 DUF2258 PF10015.4 gi|352683012|ref|YP_004893536.1| - 1.2e-28 98.6 1.0 2.1e-28 97.9 0.7 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) Erp_C PF06780.6 gi|352683012|ref|YP_004893536.1| - 0.029 14.1 0.2 0.15 11.8 0.2 1.9 1 1 0 1 1 1 0 Erp protein C-terminus Matrilin_ccoil PF10393.4 gi|352683012|ref|YP_004893536.1| - 0.2 11.0 1.8 1.1 8.6 1.1 2.3 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin IGPS PF00218.16 gi|352683013|ref|YP_004893537.1| - 3.8e-50 170.3 0.0 4.6e-50 170.0 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|352683013|ref|YP_004893537.1| - 2e-05 23.9 0.0 2.9e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|352683013|ref|YP_004893537.1| - 0.0015 17.4 0.2 0.0024 16.8 0.1 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|352683013|ref|YP_004893537.1| - 0.0023 16.9 0.0 0.0042 16.0 0.0 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.12 gi|352683013|ref|YP_004893537.1| - 0.0046 15.8 0.0 0.0062 15.4 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PA PF02225.17 gi|352683013|ref|YP_004893537.1| - 0.0093 15.6 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 1 PA domain ThiG PF05690.9 gi|352683013|ref|YP_004893537.1| - 0.045 12.8 0.0 0.11 11.5 0.0 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|352683013|ref|YP_004893537.1| - 0.059 12.5 0.0 0.61 9.1 0.0 2.0 1 1 0 1 1 1 0 Nitronate monooxygenase PcrB PF01884.12 gi|352683013|ref|YP_004893537.1| - 0.1 11.8 0.0 0.22 10.7 0.0 1.5 2 0 0 2 2 2 0 PcrB family GATase PF00117.23 gi|352683014|ref|YP_004893538.1| - 4.1e-51 173.1 0.0 4.6e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|352683014|ref|YP_004893538.1| - 6.6e-11 42.0 0.0 1.5e-10 40.8 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|352683014|ref|YP_004893538.1| - 0.12 12.0 0.0 0.21 11.1 0.0 1.4 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Chorismate_bind PF00425.13 gi|352683015|ref|YP_004893539.1| - 2.9e-88 295.5 0.0 3.6e-88 295.2 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|352683015|ref|YP_004893539.1| - 1.2e-09 38.3 0.0 3.6e-09 36.7 0.0 1.8 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region DUF3195 PF11424.3 gi|352683016|ref|YP_004893540.1| - 8.9e-18 64.2 0.0 1.1e-17 64.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) NusG PF02357.14 gi|352683016|ref|YP_004893540.1| - 0.1 12.8 0.0 0.34 11.1 0.0 2.0 1 1 0 1 1 1 0 Transcription termination factor nusG Methyltransf_18 PF12847.2 gi|352683017|ref|YP_004893541.1| - 8.7e-07 29.5 0.0 1.2e-06 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|352683017|ref|YP_004893541.1| - 2.7e-06 27.3 0.0 3.6e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|352683017|ref|YP_004893541.1| - 0.00046 20.6 0.0 0.00068 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|352683017|ref|YP_004893541.1| - 0.0022 17.6 0.0 0.0038 16.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|352683017|ref|YP_004893541.1| - 0.0038 16.9 0.0 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|352683017|ref|YP_004893541.1| - 0.0061 16.8 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|352683017|ref|YP_004893541.1| - 0.012 14.7 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase NfeD PF01957.13 gi|352683018|ref|YP_004893542.1| - 8.7e-12 45.3 0.0 1.2e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding IncA PF04156.9 gi|352683018|ref|YP_004893542.1| - 0.055 13.0 5.0 0.064 12.8 3.4 1.1 1 0 0 1 1 1 0 IncA protein DUF3799 PF12684.2 gi|352683019|ref|YP_004893543.1| - 0.16 11.2 0.0 0.2 10.9 0.0 1.1 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) Cdc6_C PF09079.6 gi|352683020|ref|YP_004893544.1| - 2.6e-22 78.3 0.0 1e-21 76.4 0.0 2.0 3 0 0 3 3 3 1 CDC6, C terminal AAA_22 PF13401.1 gi|352683020|ref|YP_004893544.1| - 4.3e-08 33.3 0.0 1.7e-07 31.4 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|352683020|ref|YP_004893544.1| - 8.4e-08 32.4 0.0 3e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|352683020|ref|YP_004893544.1| - 0.0091 15.7 0.0 0.022 14.4 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_5 PF07728.9 gi|352683020|ref|YP_004893544.1| - 0.011 15.5 0.0 0.033 13.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|352683020|ref|YP_004893544.1| - 0.013 15.6 0.0 0.062 13.4 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ORC5_C PF14630.1 gi|352683020|ref|YP_004893544.1| - 0.016 14.6 0.1 1 8.7 0.0 2.2 1 1 0 2 2 2 0 Origin recognition complex (ORC) subunit 5 C-terminus PqqD PF05402.7 gi|352683020|ref|YP_004893544.1| - 0.017 15.0 0.0 0.051 13.5 0.0 1.9 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Pox_A32 PF04665.7 gi|352683020|ref|YP_004893544.1| - 0.02 14.2 0.1 0.05 12.8 0.0 1.6 2 0 0 2 2 2 0 Poxvirus A32 protein FtsK_SpoIIIE PF01580.13 gi|352683020|ref|YP_004893544.1| - 0.045 13.2 0.0 0.14 11.6 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|352683020|ref|YP_004893544.1| - 0.053 13.4 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|352683020|ref|YP_004893544.1| - 0.073 12.7 0.0 0.28 10.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain PCP_red PF08369.5 gi|352683020|ref|YP_004893544.1| - 0.12 12.2 0.3 0.62 9.9 0.1 2.3 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit HTH_20 PF12840.2 gi|352683021|ref|YP_004893545.1| - 5.6e-11 42.0 0.2 5.6e-11 42.0 0.1 2.0 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|352683021|ref|YP_004893545.1| - 2.6e-09 36.5 0.1 6.3e-09 35.3 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|352683021|ref|YP_004893545.1| - 1.8e-07 30.4 1.7 3e-07 29.6 1.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|352683021|ref|YP_004893545.1| - 9.1e-05 22.4 0.1 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|352683021|ref|YP_004893545.1| - 0.0011 18.7 0.4 0.0018 18.0 0.3 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|352683021|ref|YP_004893545.1| - 0.0017 17.8 0.2 0.0052 16.3 0.1 1.9 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.1 gi|352683021|ref|YP_004893545.1| - 0.0021 18.0 0.9 0.0031 17.4 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|352683021|ref|YP_004893545.1| - 0.0039 16.8 1.3 0.012 15.2 0.2 1.9 2 0 0 2 2 2 1 MarR family DUF4423 PF14394.1 gi|352683021|ref|YP_004893545.1| - 0.0045 16.5 0.1 0.0061 16.1 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) FaeA PF04703.7 gi|352683021|ref|YP_004893545.1| - 0.0049 17.0 0.2 0.0074 16.4 0.2 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_45 PF14947.1 gi|352683021|ref|YP_004893545.1| - 0.0052 16.5 0.1 0.0091 15.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|352683021|ref|YP_004893545.1| - 0.0065 16.5 0.2 0.0089 16.1 0.1 1.3 1 1 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|352683021|ref|YP_004893545.1| - 0.0091 15.6 0.3 0.011 15.3 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|352683021|ref|YP_004893545.1| - 0.012 15.1 0.2 0.031 13.8 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain TFIIE_alpha PF02002.12 gi|352683021|ref|YP_004893545.1| - 0.027 13.9 0.4 0.042 13.3 0.3 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_Tnp_1 PF01527.15 gi|352683021|ref|YP_004893545.1| - 0.035 14.0 0.1 0.055 13.4 0.1 1.5 1 1 0 1 1 1 0 Transposase HTH_23 PF13384.1 gi|352683021|ref|YP_004893545.1| - 0.035 13.7 0.3 0.083 12.5 0.2 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HxlR PF01638.12 gi|352683021|ref|YP_004893545.1| - 0.04 13.5 0.5 0.049 13.2 0.4 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix MarR PF01047.17 gi|352683021|ref|YP_004893545.1| - 0.058 13.1 1.1 0.097 12.3 0.2 1.8 2 1 0 2 2 2 0 MarR family HTH_29 PF13551.1 gi|352683021|ref|YP_004893545.1| - 0.086 12.9 0.9 0.1 12.7 0.6 1.2 1 0 0 1 1 1 0 Winged helix-turn helix MazG-like PF12643.2 gi|352683021|ref|YP_004893545.1| - 0.09 12.7 0.1 0.37 10.7 0.0 2.0 1 1 1 2 2 2 0 MazG-like family HTH_26 PF13443.1 gi|352683021|ref|YP_004893545.1| - 0.11 12.7 0.1 0.25 11.5 0.0 1.6 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain AAA PF00004.24 gi|352683022|ref|YP_004893546.1| - 3.2e-17 62.9 0.0 2.4e-15 56.8 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|352683022|ref|YP_004893546.1| - 4.4e-09 35.5 0.0 0.00056 18.7 0.0 2.4 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|352683022|ref|YP_004893546.1| - 4.6e-08 32.3 0.3 2.8e-05 23.3 0.0 3.0 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|352683022|ref|YP_004893546.1| - 4.8e-08 33.2 0.4 0.00018 21.6 0.0 3.8 3 1 0 3 3 3 1 AAA domain DNA_pol3_delta PF06144.8 gi|352683022|ref|YP_004893546.1| - 1.1e-07 31.5 0.1 4.5e-07 29.5 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_17 PF13207.1 gi|352683022|ref|YP_004893546.1| - 3.9e-07 30.9 0.1 1.4e-06 29.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|352683022|ref|YP_004893546.1| - 5.2e-07 28.7 2.3 0.0025 16.5 0.0 2.5 3 0 0 3 3 3 2 TIP49 C-terminus AAA_5 PF07728.9 gi|352683022|ref|YP_004893546.1| - 1.1e-06 28.4 0.1 1.5e-05 24.7 0.0 2.6 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|352683022|ref|YP_004893546.1| - 1.1e-06 28.7 0.2 1e-05 25.6 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|352683022|ref|YP_004893546.1| - 9.5e-06 25.4 0.4 0.00032 20.4 0.1 2.8 1 1 1 2 2 2 1 Bacterial dnaA protein AAA_2 PF07724.9 gi|352683022|ref|YP_004893546.1| - 1.5e-05 24.9 0.0 7.9e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|352683022|ref|YP_004893546.1| - 1.6e-05 24.5 0.2 0.0085 15.7 0.0 3.5 2 1 2 4 4 4 1 NACHT domain AAA_14 PF13173.1 gi|352683022|ref|YP_004893546.1| - 1.8e-05 24.6 0.0 0.00016 21.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|352683022|ref|YP_004893546.1| - 2.2e-05 24.5 0.0 0.00019 21.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_18 PF13238.1 gi|352683022|ref|YP_004893546.1| - 2.5e-05 24.5 0.1 0.00017 21.9 0.0 2.4 2 1 1 3 3 2 1 AAA domain IstB_IS21 PF01695.12 gi|352683022|ref|YP_004893546.1| - 0.00011 21.6 0.0 0.0075 15.6 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|352683022|ref|YP_004893546.1| - 0.00011 21.3 0.0 0.0002 20.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|352683022|ref|YP_004893546.1| - 0.00014 21.5 0.1 0.0021 17.7 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain DUF258 PF03193.11 gi|352683022|ref|YP_004893546.1| - 0.00029 20.0 0.0 0.00051 19.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|352683022|ref|YP_004893546.1| - 0.0004 20.1 0.0 0.0013 18.4 0.0 1.9 2 0 0 2 2 1 1 NTPase AAA_28 PF13521.1 gi|352683022|ref|YP_004893546.1| - 0.0007 19.5 0.0 0.0017 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|352683022|ref|YP_004893546.1| - 0.00071 18.5 0.1 0.0025 16.7 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|352683022|ref|YP_004893546.1| - 0.00073 19.4 0.0 0.0019 18.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|352683022|ref|YP_004893546.1| - 0.003 16.5 0.0 0.0063 15.4 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|352683022|ref|YP_004893546.1| - 0.0048 16.3 0.0 0.023 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|352683022|ref|YP_004893546.1| - 0.0064 16.0 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|352683022|ref|YP_004893546.1| - 0.0075 15.7 0.3 0.42 9.9 0.2 2.2 1 1 0 1 1 1 1 AAA-like domain AAA_3 PF07726.6 gi|352683022|ref|YP_004893546.1| - 0.0091 15.5 0.0 0.022 14.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|352683022|ref|YP_004893546.1| - 0.016 14.7 0.0 0.021 14.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|352683022|ref|YP_004893546.1| - 0.017 14.2 0.0 0.054 12.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|352683022|ref|YP_004893546.1| - 0.021 14.8 0.0 0.057 13.3 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|352683022|ref|YP_004893546.1| - 0.032 14.5 0.0 0.084 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter UPF0079 PF02367.12 gi|352683022|ref|YP_004893546.1| - 0.049 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AFG1_ATPase PF03969.11 gi|352683022|ref|YP_004893546.1| - 0.065 12.0 0.0 0.49 9.1 0.0 2.3 3 0 0 3 3 3 0 AFG1-like ATPase Sigma54_activat PF00158.21 gi|352683022|ref|YP_004893546.1| - 0.071 12.5 0.0 0.61 9.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain DEAD PF00270.24 gi|352683022|ref|YP_004893546.1| - 0.083 12.3 0.0 3.9 6.9 0.0 2.5 1 1 0 2 2 2 0 DEAD/DEAH box helicase MarR_2 PF12802.2 gi|352683022|ref|YP_004893546.1| - 0.085 12.5 0.8 5 6.8 0.0 3.4 3 1 1 4 4 3 0 MarR family AAA_24 PF13479.1 gi|352683022|ref|YP_004893546.1| - 0.09 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|352683022|ref|YP_004893546.1| - 0.093 12.6 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase ArgK PF03308.11 gi|352683022|ref|YP_004893546.1| - 0.095 11.4 0.0 0.21 10.3 0.0 1.5 1 0 0 1 1 1 0 ArgK protein HTH_25 PF13413.1 gi|352683022|ref|YP_004893546.1| - 0.1 12.2 0.1 0.25 11.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Miro PF08477.8 gi|352683022|ref|YP_004893546.1| - 0.11 12.9 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein NB-ARC PF00931.17 gi|352683022|ref|YP_004893546.1| - 0.13 11.0 0.1 0.49 9.2 0.0 2.0 3 0 0 3 3 2 0 NB-ARC domain SRP54 PF00448.17 gi|352683022|ref|YP_004893546.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.14 gi|352683022|ref|YP_004893546.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|352683022|ref|YP_004893546.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.13 gi|352683022|ref|YP_004893546.1| - 0.15 11.5 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase UBA PF00627.26 gi|352683022|ref|YP_004893546.1| - 0.9 9.4 3.3 1.1 9.1 0.3 2.7 3 0 0 3 3 2 0 UBA/TS-N domain Rep_fac_C PF08542.6 gi|352683023|ref|YP_004893547.1| - 6e-18 64.6 0.2 1.7e-17 63.1 0.1 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|352683023|ref|YP_004893547.1| - 4e-15 56.1 0.0 1.1e-14 54.7 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|352683023|ref|YP_004893547.1| - 6.5e-14 51.9 0.0 1e-11 44.7 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|352683023|ref|YP_004893547.1| - 2.1e-10 39.9 0.0 3.7e-05 22.6 0.0 2.1 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|352683023|ref|YP_004893547.1| - 9.4e-09 34.6 0.0 3.6e-08 32.7 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|352683023|ref|YP_004893547.1| - 1.7e-08 34.6 0.1 0.0016 18.5 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|352683023|ref|YP_004893547.1| - 5.7e-08 32.9 0.8 0.0011 18.9 0.0 3.2 1 1 2 3 3 3 2 AAA ATPase domain AAA_14 PF13173.1 gi|352683023|ref|YP_004893547.1| - 5.2e-06 26.3 0.0 9e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352683023|ref|YP_004893547.1| - 7.7e-06 25.5 1.1 1.9e-05 24.3 0.0 2.3 3 0 0 3 3 1 1 Part of AAA domain AAA_3 PF07726.6 gi|352683023|ref|YP_004893547.1| - 4.5e-05 23.0 0.0 9.9e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|352683023|ref|YP_004893547.1| - 4.7e-05 22.2 0.0 0.034 12.8 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_33 PF13671.1 gi|352683023|ref|YP_004893547.1| - 8.8e-05 22.4 0.0 0.00027 20.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|352683023|ref|YP_004893547.1| - 0.00011 21.9 0.1 0.00045 19.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|352683023|ref|YP_004893547.1| - 0.00012 21.7 0.0 0.00031 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|352683023|ref|YP_004893547.1| - 0.00016 21.1 0.7 0.00058 19.3 0.1 2.2 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|352683023|ref|YP_004893547.1| - 0.00019 20.6 0.0 0.0053 15.9 0.0 2.7 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|352683023|ref|YP_004893547.1| - 0.00027 21.7 0.1 0.001 19.9 0.0 2.0 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|352683023|ref|YP_004893547.1| - 0.00047 20.4 0.0 0.0014 18.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|352683023|ref|YP_004893547.1| - 0.00095 18.7 0.0 0.0024 17.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|352683023|ref|YP_004893547.1| - 0.0011 18.5 0.1 0.044 13.2 0.0 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|352683023|ref|YP_004893547.1| - 0.0012 18.3 0.2 0.95 8.8 0.0 2.7 3 0 0 3 3 3 1 AAA-like domain PhoH PF02562.11 gi|352683023|ref|YP_004893547.1| - 0.0022 17.2 0.3 0.58 9.3 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein FtsK_SpoIIIE PF01580.13 gi|352683023|ref|YP_004893547.1| - 0.0038 16.7 1.1 0.11 11.9 0.0 2.5 3 0 0 3 3 2 1 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|352683023|ref|YP_004893547.1| - 0.0088 15.4 0.0 0.019 14.3 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.1 gi|352683023|ref|YP_004893547.1| - 0.0091 15.5 1.6 0.078 12.5 0.2 2.6 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|352683023|ref|YP_004893547.1| - 0.0099 15.9 0.0 0.082 12.9 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|352683023|ref|YP_004893547.1| - 0.012 15.7 0.0 0.031 14.4 0.0 1.7 2 0 0 2 2 1 0 RNA helicase T2SE PF00437.15 gi|352683023|ref|YP_004893547.1| - 0.012 14.5 0.0 0.14 11.0 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|352683023|ref|YP_004893547.1| - 0.015 15.2 0.0 0.032 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|352683023|ref|YP_004893547.1| - 0.023 13.4 0.2 0.44 9.2 0.0 2.3 1 1 1 2 2 2 0 ArgK protein DNA_pol3_delta PF06144.8 gi|352683023|ref|YP_004893547.1| - 0.025 14.1 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DUF2075 PF09848.4 gi|352683023|ref|YP_004893547.1| - 0.033 13.1 0.0 0.27 10.1 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|352683023|ref|YP_004893547.1| - 0.048 12.8 0.0 0.095 11.8 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ResIII PF04851.10 gi|352683023|ref|YP_004893547.1| - 0.048 13.4 0.0 0.18 11.5 0.0 1.8 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit MobB PF03205.9 gi|352683023|ref|YP_004893547.1| - 0.061 13.0 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.13 gi|352683023|ref|YP_004893547.1| - 0.096 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Ribosomal_S7 PF00177.16 gi|352683024|ref|YP_004893548.1| - 3.1e-45 153.3 0.0 3.6e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF99 PF01949.11 gi|352683026|ref|YP_004893550.1| - 2.7e-46 157.0 0.0 3.2e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Fer4 PF00037.22 gi|352683027|ref|YP_004893551.1| - 1.8e-05 24.1 6.6 0.00077 18.9 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|352683027|ref|YP_004893551.1| - 0.0012 19.0 7.3 0.0034 17.6 5.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352683027|ref|YP_004893551.1| - 0.0017 18.1 10.4 0.06 13.2 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|352683027|ref|YP_004893551.1| - 0.0019 18.5 6.9 0.023 15.0 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|352683027|ref|YP_004893551.1| - 0.0046 16.7 7.7 0.013 15.3 5.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|352683027|ref|YP_004893551.1| - 0.0047 16.7 6.0 0.011 15.5 4.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352683027|ref|YP_004893551.1| - 0.07 13.0 11.0 0.13 12.2 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|352683027|ref|YP_004893551.1| - 0.37 11.5 5.8 0.78 10.5 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|352683027|ref|YP_004893551.1| - 3 7.9 10.3 1.4 8.9 1.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain CxxCxxCC PF03692.10 gi|352683028|ref|YP_004893552.1| - 1.4e-08 35.0 0.0 1.7e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Ribosomal_L14e PF01929.12 gi|352683029|ref|YP_004893553.1| - 2e-05 24.8 0.1 3e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.24 gi|352683029|ref|YP_004893553.1| - 0.0061 16.2 5.2 0.016 14.9 3.6 1.8 1 0 0 1 1 1 1 KOW motif UBA PF00627.26 gi|352683029|ref|YP_004893553.1| - 0.064 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 UBA/TS-N domain ParG PF09274.5 gi|352683029|ref|YP_004893553.1| - 0.11 12.4 0.6 0.22 11.4 0.4 1.6 1 1 0 1 1 1 0 ParG TruB_N PF01509.13 gi|352683031|ref|YP_004893555.1| - 1.4e-23 83.6 0.0 5.9e-20 71.9 0.0 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|352683031|ref|YP_004893555.1| - 2e-22 78.7 0.0 4.2e-22 77.6 0.0 1.6 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|352683031|ref|YP_004893555.1| - 6.3e-19 67.6 0.1 1.5e-18 66.4 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF211 PF02680.9 gi|352683032|ref|YP_004893556.1| - 5.3e-25 87.0 8.0 5.8e-25 86.9 5.6 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 NikR_C PF08753.6 gi|352683032|ref|YP_004893556.1| - 0.0007 19.4 2.5 0.077 12.8 0.6 2.1 2 0 0 2 2 2 2 NikR C terminal nickel binding domain HMA PF00403.21 gi|352683032|ref|YP_004893556.1| - 0.14 12.3 5.8 0.87 9.7 4.0 2.1 1 1 0 1 1 1 0 Heavy-metal-associated domain VIT1 PF01988.14 gi|352683033|ref|YP_004893557.1| - 0.00064 19.2 16.6 0.34 10.3 11.5 2.3 1 1 0 1 1 1 1 VIT family DUF2834 PF11196.3 gi|352683033|ref|YP_004893557.1| - 1.1 9.5 7.7 0.7 10.0 1.7 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2834) OrfB_Zn_ribbon PF07282.6 gi|352683034|ref|YP_004893558.1| - 5e-27 93.3 0.1 9.9e-27 92.4 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|352683034|ref|YP_004893558.1| - 0.00071 19.0 1.4 0.0014 18.0 1.0 1.5 1 1 0 1 1 1 1 Probable transposase DUF3596 PF12167.3 gi|352683034|ref|YP_004893558.1| - 0.0052 16.2 0.0 0.015 14.8 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3596) DZR PF12773.2 gi|352683034|ref|YP_004893558.1| - 0.0083 15.9 0.7 0.014 15.2 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|352683034|ref|YP_004893558.1| - 0.061 13.0 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_3 PF13878.1 gi|352683034|ref|YP_004893558.1| - 0.59 9.7 2.0 11 5.6 0.0 2.3 1 1 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.1 gi|352683034|ref|YP_004893558.1| - 1.2 8.4 4.0 4.3 6.6 2.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain AraC_N PF06719.8 gi|352683035|ref|YP_004893559.1| - 0.023 14.0 0.0 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus DUF2292 PF10055.4 gi|352683035|ref|YP_004893559.1| - 0.079 12.2 0.5 0.78 9.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized small protein (DUF2292) GFO_IDH_MocA PF01408.17 gi|352683037|ref|YP_004893561.1| - 1.1e-19 71.0 0.0 2.1e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|352683037|ref|YP_004893561.1| - 1.3e-06 28.7 0.0 5.6e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|352683037|ref|YP_004893561.1| - 0.0013 18.5 0.0 0.0042 16.8 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.14 gi|352683037|ref|YP_004893561.1| - 0.016 15.7 0.0 0.037 14.5 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain CopB PF05275.6 gi|352683037|ref|YP_004893561.1| - 0.045 12.9 0.0 0.075 12.2 0.0 1.3 1 0 0 1 1 1 0 Copper resistance protein B precursor (CopB) ThiF PF00899.16 gi|352683037|ref|YP_004893561.1| - 0.063 13.1 0.2 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 ThiF family MoCF_biosynth PF00994.19 gi|352683038|ref|YP_004893562.1| - 1.8e-38 131.1 0.0 2.4e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain AhpC-TSA PF00578.16 gi|352683039|ref|YP_004893563.1| - 1.5e-29 102.1 0.0 1.9e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|352683039|ref|YP_004893563.1| - 9.7e-20 70.6 0.0 1.1e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|352683039|ref|YP_004893563.1| - 0.00046 20.0 0.0 0.00055 19.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF3801 PF12687.2 gi|352683039|ref|YP_004893563.1| - 0.11 12.0 0.0 0.67 9.4 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3801) NTPase_1 PF03266.10 gi|352683040|ref|YP_004893564.1| - 1.3e-43 148.5 0.0 1.5e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|352683040|ref|YP_004893564.1| - 3.1e-07 29.8 0.6 7.6e-07 28.6 0.4 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_17 PF13207.1 gi|352683040|ref|YP_004893564.1| - 2.7e-06 28.2 0.1 3.1e-06 28.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|352683040|ref|YP_004893564.1| - 1.6e-05 25.0 0.0 5.3e-05 23.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|352683040|ref|YP_004893564.1| - 3.3e-05 24.0 0.1 0.0001 22.5 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|352683040|ref|YP_004893564.1| - 8.4e-05 22.0 0.1 0.0038 16.6 0.1 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|352683040|ref|YP_004893564.1| - 0.00017 21.9 0.1 0.00035 20.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352683040|ref|YP_004893564.1| - 0.00025 20.7 0.5 0.00053 19.6 0.4 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|352683040|ref|YP_004893564.1| - 0.0005 20.0 0.1 0.0012 18.8 0.1 1.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|352683040|ref|YP_004893564.1| - 0.00062 19.4 0.0 0.0009 18.9 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|352683040|ref|YP_004893564.1| - 0.00071 19.1 1.1 0.012 15.1 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|352683040|ref|YP_004893564.1| - 0.0019 17.8 0.2 0.0045 16.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|352683040|ref|YP_004893564.1| - 0.0037 17.2 0.3 0.012 15.6 0.0 1.9 2 1 1 3 3 3 1 AAA ATPase domain AAA_33 PF13671.1 gi|352683040|ref|YP_004893564.1| - 0.0045 16.8 0.0 0.0077 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|352683040|ref|YP_004893564.1| - 0.0051 16.4 0.3 0.011 15.4 0.1 1.6 2 0 0 2 2 1 1 NACHT domain RuvB_N PF05496.7 gi|352683040|ref|YP_004893564.1| - 0.0053 15.8 0.1 0.034 13.2 0.1 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|352683040|ref|YP_004893564.1| - 0.0055 16.4 0.4 0.031 14.0 0.1 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|352683040|ref|YP_004893564.1| - 0.0076 15.6 0.1 0.018 14.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|352683040|ref|YP_004893564.1| - 0.011 14.5 2.8 0.05 12.3 2.0 1.9 1 1 1 2 2 2 0 ArgK protein AAA_10 PF12846.2 gi|352683040|ref|YP_004893564.1| - 0.011 15.2 0.0 0.017 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|352683040|ref|YP_004893564.1| - 0.022 14.2 0.1 0.29 10.5 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|352683040|ref|YP_004893564.1| - 0.022 14.6 0.0 0.078 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Arteri_GP4 PF02497.10 gi|352683040|ref|YP_004893564.1| - 0.034 14.0 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Arterivirus glycoprotein MMR_HSR1 PF01926.18 gi|352683040|ref|YP_004893564.1| - 0.038 13.9 0.0 0.074 13.0 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|352683040|ref|YP_004893564.1| - 0.044 12.6 0.1 0.061 12.1 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Viral_helicase1 PF01443.13 gi|352683040|ref|YP_004893564.1| - 0.052 13.0 0.1 1.2 8.5 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase FeoB_N PF02421.13 gi|352683040|ref|YP_004893564.1| - 0.057 12.6 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B PadR PF03551.9 gi|352683041|ref|YP_004893565.1| - 1.3e-17 63.2 0.1 3.4e-17 61.9 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_42 PF06224.7 gi|352683041|ref|YP_004893565.1| - 7e-05 22.3 0.0 8.1e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.7 gi|352683041|ref|YP_004893565.1| - 7.7e-05 21.0 0.0 8.6e-05 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF4364 PF14277.1 gi|352683041|ref|YP_004893565.1| - 0.0039 16.8 0.1 0.0075 15.8 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) HTH_11 PF08279.7 gi|352683041|ref|YP_004893565.1| - 0.0055 16.3 0.3 1.2 8.8 0.1 2.4 2 0 0 2 2 2 1 HTH domain FUR PF01475.14 gi|352683041|ref|YP_004893565.1| - 0.0084 16.0 0.0 0.031 14.1 0.0 1.9 2 1 0 2 2 2 1 Ferric uptake regulator family TrmB PF01978.14 gi|352683041|ref|YP_004893565.1| - 0.011 15.4 0.2 0.083 12.6 0.0 2.3 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|352683041|ref|YP_004893565.1| - 0.012 15.7 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_45 PF14947.1 gi|352683041|ref|YP_004893565.1| - 0.013 15.3 0.1 0.037 13.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix MarR PF01047.17 gi|352683041|ref|YP_004893565.1| - 0.024 14.3 0.0 6.4 6.5 0.0 2.5 2 0 0 2 2 2 0 MarR family AphA_like PF14557.1 gi|352683041|ref|YP_004893565.1| - 0.03 13.8 0.0 0.035 13.6 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator PaaX PF07848.7 gi|352683041|ref|YP_004893565.1| - 0.04 13.9 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 PaaX-like protein GntR PF00392.16 gi|352683041|ref|YP_004893565.1| - 0.062 12.7 0.0 0.87 9.0 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|352683041|ref|YP_004893565.1| - 0.088 13.1 0.1 0.26 11.6 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|352683041|ref|YP_004893565.1| - 0.089 12.8 0.4 1.2 9.2 0.0 2.6 3 0 0 3 3 3 0 Mrr N-terminal domain DUF1495 PF07381.6 gi|352683041|ref|YP_004893565.1| - 0.11 12.1 0.0 0.51 10.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.1 gi|352683041|ref|YP_004893565.1| - 0.15 11.4 2.6 1.9 7.9 0.1 3.2 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding AIRS_C PF02769.17 gi|352683042|ref|YP_004893566.1| - 1.3e-22 80.4 1.1 5e-22 78.5 0.3 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|352683042|ref|YP_004893566.1| - 2.1e-10 40.6 0.0 7.3e-10 38.9 0.0 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PaRep2b PF07775.6 gi|352683043|ref|YP_004893567.1| - 8.8e-13 47.2 2.9 3.4e-12 45.3 1.2 1.9 1 1 1 2 2 2 2 PaRep2b protein Secretin_N PF03958.12 gi|352683043|ref|YP_004893567.1| - 0.05 13.7 0.6 0.19 11.9 0.1 2.2 3 0 0 3 3 3 0 Bacterial type II/III secretion system short domain Glyoxalase_2 PF12681.2 gi|352683043|ref|YP_004893567.1| - 0.095 13.3 0.7 1.2 9.7 0.1 2.3 1 1 1 2 2 2 0 Glyoxalase-like domain polyprenyl_synt PF00348.12 gi|352683045|ref|YP_004893569.1| - 2.3e-22 79.0 0.2 5.8e-22 77.7 0.1 1.6 1 1 0 1 1 1 1 Polyprenyl synthetase HTH_11 PF08279.7 gi|352683046|ref|YP_004893570.1| - 0.00047 19.7 0.0 0.00055 19.5 0.0 1.2 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|352683046|ref|YP_004893570.1| - 0.0024 17.5 0.0 0.003 17.2 0.0 1.1 1 0 0 1 1 1 1 MarR family FaeA PF04703.7 gi|352683046|ref|YP_004893570.1| - 0.011 15.8 0.1 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein LexA_DNA_bind PF01726.11 gi|352683046|ref|YP_004893570.1| - 0.018 14.6 0.0 0.02 14.4 0.0 1.1 1 0 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.14 gi|352683046|ref|YP_004893570.1| - 0.031 13.9 0.2 0.04 13.6 0.1 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF885 PF05960.6 gi|352683046|ref|YP_004893570.1| - 0.036 13.2 0.1 0.036 13.2 0.1 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) DUF3253 PF11625.3 gi|352683046|ref|YP_004893570.1| - 0.038 13.8 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) Sigma70_r3 PF04539.11 gi|352683046|ref|YP_004893570.1| - 0.042 13.7 0.0 0.088 12.7 0.0 1.6 1 1 1 2 2 2 0 Sigma-70 region 3 GntR PF00392.16 gi|352683046|ref|YP_004893570.1| - 0.045 13.1 0.1 0.051 13.0 0.1 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF1495 PF07381.6 gi|352683046|ref|YP_004893570.1| - 0.06 13.0 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) PaaX PF07848.7 gi|352683046|ref|YP_004893570.1| - 0.072 13.1 0.0 0.095 12.7 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.1 gi|352683046|ref|YP_004893570.1| - 0.08 12.7 0.0 0.082 12.7 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Terminase_5 PF06056.7 gi|352683046|ref|YP_004893570.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) DMRL_synthase PF00885.14 gi|352683047|ref|YP_004893571.1| - 5.2e-36 123.4 4.6 5.8e-36 123.3 3.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FtsA PF14450.1 gi|352683047|ref|YP_004893571.1| - 0.052 13.3 0.2 0.22 11.3 0.0 1.9 1 1 1 2 2 2 0 Cell division protein FtsA Ribosomal_S18 PF01084.15 gi|352683047|ref|YP_004893571.1| - 0.15 11.9 1.4 7.9 6.4 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S18 Laminin_II PF06009.7 gi|352683048|ref|YP_004893572.1| - 0.0014 18.4 0.9 0.0047 16.6 0.4 1.9 2 0 0 2 2 2 1 Laminin Domain II IncA PF04156.9 gi|352683048|ref|YP_004893572.1| - 0.004 16.7 1.9 0.0064 16.1 1.3 1.4 1 0 0 1 1 1 1 IncA protein DUF4515 PF14988.1 gi|352683048|ref|YP_004893572.1| - 0.0041 16.8 0.5 0.0062 16.2 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4515) DUF948 PF06103.6 gi|352683048|ref|YP_004893572.1| - 0.009 15.8 0.1 0.19 11.5 0.1 2.2 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) bZIP_2 PF07716.10 gi|352683048|ref|YP_004893572.1| - 0.011 15.5 3.8 0.35 10.7 0.2 2.7 2 0 0 2 2 2 0 Basic region leucine zipper Snapin_Pallidin PF14712.1 gi|352683048|ref|YP_004893572.1| - 0.011 16.0 0.9 0.039 14.2 0.4 2.1 1 1 0 1 1 1 0 Snapin/Pallidin HlyE PF06109.8 gi|352683048|ref|YP_004893572.1| - 0.012 14.6 1.1 0.018 14.0 0.1 1.8 2 0 0 2 2 2 0 Haemolysin E (HlyE) TBPIP PF07106.8 gi|352683048|ref|YP_004893572.1| - 0.031 13.8 2.3 4.2 6.8 0.5 2.7 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_13 PF13166.1 gi|352683048|ref|YP_004893572.1| - 0.037 12.5 2.6 0.048 12.1 1.8 1.0 1 0 0 1 1 1 0 AAA domain Laminin_I PF06008.9 gi|352683048|ref|YP_004893572.1| - 0.039 13.2 3.9 0.081 12.2 1.4 2.0 1 1 1 2 2 2 0 Laminin Domain I Plectin PF00681.15 gi|352683048|ref|YP_004893572.1| - 0.061 12.8 0.5 2.5 7.7 0.1 2.6 2 0 0 2 2 2 0 Plectin repeat Rad33 PF08730.5 gi|352683048|ref|YP_004893572.1| - 0.074 12.5 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Rad33 OmpH PF03938.9 gi|352683048|ref|YP_004893572.1| - 0.089 12.7 3.9 0.16 11.8 2.7 1.5 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Sec2p PF06428.6 gi|352683048|ref|YP_004893572.1| - 0.14 12.0 2.8 0.39 10.5 1.9 1.8 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p Phlebovirus_NSM PF07246.6 gi|352683048|ref|YP_004893572.1| - 0.2 10.7 1.4 0.36 9.9 0.9 1.5 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Viral_P18 PF04521.8 gi|352683048|ref|YP_004893572.1| - 0.22 10.9 2.9 3.4 7.1 0.2 2.4 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Uso1_p115_C PF04871.8 gi|352683048|ref|YP_004893572.1| - 0.23 11.4 5.1 0.085 12.7 1.8 1.6 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Cortex-I_coil PF09304.5 gi|352683048|ref|YP_004893572.1| - 0.32 11.0 8.4 0.69 9.9 3.2 2.6 1 1 2 3 3 3 0 Cortexillin I, coiled coil DUF3782 PF12644.2 gi|352683048|ref|YP_004893572.1| - 0.5 10.2 4.0 3.6 7.4 0.8 2.5 2 2 0 2 2 2 0 Protein of unknown function (DUF3782) TPR_MLP1_2 PF07926.7 gi|352683048|ref|YP_004893572.1| - 0.56 9.9 6.1 0.53 10.0 3.2 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein SHOCT PF09851.4 gi|352683048|ref|YP_004893572.1| - 0.57 9.7 11.6 0.37 10.3 0.4 3.7 3 1 1 4 4 4 0 Short C-terminal domain Seryl_tRNA_N PF02403.17 gi|352683048|ref|YP_004893572.1| - 0.95 9.5 4.7 1.6 8.7 1.6 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Spectrin PF00435.16 gi|352683048|ref|YP_004893572.1| - 1 9.6 4.8 2.4 8.4 1.0 2.5 2 1 1 3 3 3 0 Spectrin repeat Atg14 PF10186.4 gi|352683048|ref|YP_004893572.1| - 1.5 7.7 5.2 2.6 6.9 3.5 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4200 PF13863.1 gi|352683048|ref|YP_004893572.1| - 1.5 8.8 6.8 4.8 7.1 1.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF4140 PF13600.1 gi|352683048|ref|YP_004893572.1| - 5.4 7.5 14.2 4 7.9 0.5 3.8 1 1 3 4 4 4 0 N-terminal domain of unknown function (DUF4140) Med28 PF11594.3 gi|352683049|ref|YP_004893573.1| - 0.00032 20.8 3.3 0.00032 20.8 2.3 2.0 1 1 1 2 2 2 1 Mediator complex subunit 28 GvpG PF05120.7 gi|352683049|ref|YP_004893573.1| - 0.025 14.3 0.1 0.025 14.3 0.1 2.9 2 1 0 3 3 3 0 Gas vesicle protein G Baculo_PEP_C PF04513.7 gi|352683049|ref|YP_004893573.1| - 0.028 14.2 1.7 2 8.2 0.2 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|352683049|ref|YP_004893573.1| - 0.036 14.3 0.1 0.036 14.3 0.0 2.7 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ApoO PF09769.4 gi|352683049|ref|YP_004893573.1| - 0.076 12.7 5.3 0.47 10.1 0.1 2.2 1 1 0 2 2 2 0 Apolipoprotein O CorA PF01544.13 gi|352683049|ref|YP_004893573.1| - 0.13 11.2 7.1 0.13 11.2 4.2 1.5 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Syntaxin-6_N PF09177.6 gi|352683049|ref|YP_004893573.1| - 0.45 10.9 10.4 3.2 8.2 5.7 3.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal CCDC-167 PF15188.1 gi|352683049|ref|YP_004893573.1| - 0.63 10.0 14.0 2.5 8.0 0.4 3.1 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 V_ATPase_I PF01496.14 gi|352683049|ref|YP_004893573.1| - 0.81 7.4 9.0 0.31 8.8 4.6 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Corona_S2 PF01601.11 gi|352683049|ref|YP_004893573.1| - 0.87 7.6 5.5 0.47 8.4 1.6 1.8 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein DUF342 PF03961.8 gi|352683049|ref|YP_004893573.1| - 2.1 6.6 7.0 2.8 6.2 4.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Fib_alpha PF08702.5 gi|352683049|ref|YP_004893573.1| - 4.3 7.4 11.3 1.3 9.1 0.2 2.8 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DMAP_binding PF06464.6 gi|352683049|ref|YP_004893573.1| - 5 7.7 9.3 0.15 12.6 0.7 2.5 2 1 1 3 3 3 0 DMAP1-binding Domain POX PF07526.6 gi|352683049|ref|YP_004893573.1| - 5.4 7.2 8.7 0.54 10.4 0.3 2.3 1 1 0 2 2 2 0 Associated with HOX FlaC_arch PF05377.6 gi|352683049|ref|YP_004893573.1| - 5.7 6.9 8.9 0.4 10.6 0.2 3.4 3 2 1 4 4 4 0 Flagella accessory protein C (FlaC) OmpH PF03938.9 gi|352683049|ref|YP_004893573.1| - 6.3 6.7 15.4 0.18 11.7 1.1 2.2 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) NTP_transferase PF00483.18 gi|352683050|ref|YP_004893574.1| - 6e-23 81.4 0.0 8.4e-23 80.9 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|352683050|ref|YP_004893574.1| - 6.2e-10 39.3 0.0 8.3e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain PfkB PF00294.19 gi|352683052|ref|YP_004893576.1| - 9.9e-61 205.4 1.6 1.2e-60 205.2 1.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|352683052|ref|YP_004893576.1| - 0.00019 20.7 0.0 0.0003 20.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Pyr_redox PF00070.22 gi|352683052|ref|YP_004893576.1| - 0.068 13.5 1.8 0.12 12.8 0.3 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NUT_C PF12882.2 gi|352683053|ref|YP_004893577.1| - 0.0089 15.6 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 NUT protein C terminal TruB-C_2 PF09157.6 gi|352683053|ref|YP_004893577.1| - 0.1 12.4 0.0 0.57 10.0 0.0 2.2 2 0 0 2 2 2 0 Pseudouridine synthase II TruB, C-terminal TSC22 PF01166.13 gi|352683053|ref|YP_004893577.1| - 1.3 9.0 5.2 0.22 11.4 0.7 2.0 2 0 0 2 2 2 0 TSC-22/dip/bun family DNA_ligase_A_M PF01068.16 gi|352683054|ref|YP_004893578.1| - 1.2e-58 197.8 0.1 2.6e-58 196.7 0.0 1.6 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|352683054|ref|YP_004893578.1| - 1.2e-51 175.0 0.3 6.4e-51 172.6 0.2 2.0 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|352683054|ref|YP_004893578.1| - 8.9e-24 83.7 0.0 2.4e-23 82.3 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|352683054|ref|YP_004893578.1| - 0.0015 18.1 0.3 0.013 15.1 0.0 2.5 3 0 0 3 3 3 1 DNA ligase OB-like domain CYTH PF01928.16 gi|352683055|ref|YP_004893579.1| - 8.7e-35 120.0 2.5 9.6e-35 119.9 1.8 1.0 1 0 0 1 1 1 1 CYTH domain DUF1525 PF07511.6 gi|352683056|ref|YP_004893580.1| - 2.1e-05 24.5 0.9 6.4e-05 22.9 0.6 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1525) Thioredoxin_3 PF13192.1 gi|352683056|ref|YP_004893580.1| - 0.0016 18.1 0.5 0.0081 15.9 0.0 2.2 2 1 0 2 2 2 1 Thioredoxin domain TPR_21 PF09976.4 gi|352683056|ref|YP_004893580.1| - 0.054 13.4 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat AMMECR1 PF01871.12 gi|352683057|ref|YP_004893581.1| - 3.7e-15 55.4 0.0 4.6e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 DUF3809 PF12723.2 gi|352683057|ref|YP_004893581.1| - 0.057 13.2 0.0 0.14 12.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3809) DUF4397 PF14344.1 gi|352683058|ref|YP_004893582.1| - 0.13 12.6 25.9 0.04 14.2 4.3 5.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4397) DUF1034 PF06280.7 gi|352683059|ref|YP_004893583.1| - 0.025 14.9 6.7 0.13 12.6 0.5 4.0 3 1 1 4 4 4 0 Fn3-like domain (DUF1034) Enolase_C PF00113.17 gi|352683060|ref|YP_004893584.1| - 3.8e-51 173.8 0.0 5.1e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|352683060|ref|YP_004893584.1| - 1.1e-34 119.2 0.1 1.8e-34 118.5 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|352683060|ref|YP_004893584.1| - 2.7e-05 24.6 0.0 0.00011 22.5 0.0 2.1 1 1 1 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|352683060|ref|YP_004893584.1| - 0.0092 15.9 0.5 0.037 14.0 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like tRNA-synt_1e PF01406.14 gi|352683061|ref|YP_004893585.1| - 3.4e-110 367.8 0.0 4.9e-110 367.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|352683061|ref|YP_004893585.1| - 1.2e-08 34.0 0.1 5.2e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|352683061|ref|YP_004893585.1| - 1.3e-08 33.3 0.0 2.4e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|352683061|ref|YP_004893585.1| - 5.1e-08 33.0 2.2 5.9e-07 29.6 0.1 2.3 1 1 1 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|352683061|ref|YP_004893585.1| - 1.7e-07 30.2 0.3 0.00027 19.7 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|352683061|ref|YP_004893585.1| - 0.0094 14.8 0.1 3 6.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (R) DUF1722 PF08349.6 gi|352683061|ref|YP_004893585.1| - 0.13 12.1 0.0 0.3 10.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) PK PF00224.16 gi|352683062|ref|YP_004893586.1| - 9.6e-72 241.4 0.1 1.3e-71 241.1 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain HpcH_HpaI PF03328.9 gi|352683062|ref|YP_004893586.1| - 2.2e-07 30.0 0.1 3.7e-07 29.2 0.1 1.3 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PK_C PF02887.11 gi|352683062|ref|YP_004893586.1| - 3.2e-06 26.6 0.1 2.6e-05 23.7 0.0 2.5 2 1 1 3 3 3 1 Pyruvate kinase, alpha/beta domain WSN PF02206.13 gi|352683063|ref|YP_004893587.1| - 0.037 13.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function tRNA_int_endo PF01974.12 gi|352683064|ref|YP_004893588.1| - 0.0017 18.1 0.0 0.0025 17.5 0.0 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain Sen15 PF09631.5 gi|352683064|ref|YP_004893588.1| - 0.018 15.2 0.1 0.07 13.3 0.0 1.8 1 1 1 2 2 2 0 Sen15 protein Ribosomal_L2_C PF03947.13 gi|352683065|ref|YP_004893589.1| - 4.4e-37 126.7 1.6 6.4e-37 126.2 1.1 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|352683065|ref|YP_004893589.1| - 7.8e-09 35.3 0.0 1.5e-07 31.2 0.0 2.4 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain TF_Zn_Ribbon PF08271.7 gi|352683066|ref|YP_004893590.1| - 0.0002 20.6 0.8 0.00035 19.8 0.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|352683066|ref|YP_004893590.1| - 0.0011 18.7 1.6 0.0011 18.7 1.1 1.7 2 0 0 2 2 1 1 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.14 gi|352683066|ref|YP_004893590.1| - 0.0099 15.7 2.6 0.013 15.3 1.1 1.7 1 1 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|352683066|ref|YP_004893590.1| - 0.013 15.1 1.3 0.013 15.1 0.9 1.6 2 0 0 2 2 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|352683066|ref|YP_004893590.1| - 0.013 15.2 0.5 0.024 14.4 0.2 1.6 2 0 0 2 2 1 0 Double zinc ribbon Ogr_Delta PF04606.7 gi|352683066|ref|YP_004893590.1| - 0.027 14.1 2.2 0.077 12.6 0.6 2.2 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger DNA_ligase_ZBD PF03119.11 gi|352683066|ref|YP_004893590.1| - 0.032 13.9 0.5 0.066 12.9 0.4 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain RRN7 PF11781.3 gi|352683066|ref|YP_004893590.1| - 0.05 13.1 0.4 0.096 12.2 0.3 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Rep_fac-A_C PF08646.5 gi|352683066|ref|YP_004893590.1| - 0.057 13.1 1.0 0.087 12.5 0.7 1.5 1 1 0 1 1 1 0 Replication factor-A C terminal domain Zn_ribbon_recom PF13408.1 gi|352683066|ref|YP_004893590.1| - 0.081 13.1 1.0 0.17 12.1 0.7 1.6 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.14 gi|352683066|ref|YP_004893590.1| - 0.1 12.1 1.6 0.18 11.3 1.1 1.5 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Elf1 PF05129.8 gi|352683066|ref|YP_004893590.1| - 0.11 12.2 0.2 0.18 11.4 0.1 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|352683066|ref|YP_004893590.1| - 0.12 12.7 1.8 0.19 12.0 1.1 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.14 gi|352683066|ref|YP_004893590.1| - 0.17 11.5 1.6 4.8 6.9 0.1 2.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-NADH-PPase PF09297.6 gi|352683066|ref|YP_004893590.1| - 0.19 11.2 1.4 0.4 10.2 1.0 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|352683066|ref|YP_004893590.1| - 0.21 11.4 2.2 3 7.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin RNA_POL_M_15KD PF02150.11 gi|352683066|ref|YP_004893590.1| - 0.29 10.8 3.0 0.59 9.8 0.5 2.5 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|352683066|ref|YP_004893590.1| - 0.37 10.8 3.9 2.2 8.3 2.7 2.1 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|352683066|ref|YP_004893590.1| - 0.4 10.3 7.2 1.3e+02 2.3 5.0 2.3 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.5 gi|352683066|ref|YP_004893590.1| - 0.42 10.1 2.3 1.5 8.3 1.6 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain Auto_anti-p27 PF06677.7 gi|352683066|ref|YP_004893590.1| - 0.54 10.0 2.7 1 9.1 1.9 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|352683066|ref|YP_004893590.1| - 0.56 9.5 3.3 0.67 9.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|352683066|ref|YP_004893590.1| - 0.56 10.2 6.4 0.63 10.0 0.3 2.8 3 0 0 3 3 3 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|352683066|ref|YP_004893590.1| - 0.82 9.5 3.2 13 5.6 2.2 2.3 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|352683066|ref|YP_004893590.1| - 1.1 9.4 4.6 7.9 6.6 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|352683066|ref|YP_004893590.1| - 1.4 8.4 5.2 9.5 5.8 3.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|352683066|ref|YP_004893590.1| - 1.5 8.6 6.4 11 5.7 0.1 3.3 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|352683066|ref|YP_004893590.1| - 7.4 6.2 8.9 37 3.9 2.7 3.2 2 2 0 2 2 2 0 zinc-ribbon domain FMN_dh PF01070.13 gi|352683067|ref|YP_004893591.1| - 4.5e-30 104.7 0.0 5.4e-19 68.2 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|352683067|ref|YP_004893591.1| - 2e-06 26.9 0.7 0.0093 14.9 0.8 2.8 2 1 0 2 2 2 2 Conserved region in glutamate synthase IMPDH PF00478.20 gi|352683067|ref|YP_004893591.1| - 2e-06 26.9 0.6 0.00029 19.8 0.2 2.5 1 1 1 2 2 2 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|352683067|ref|YP_004893591.1| - 0.034 13.3 0.8 0.072 12.2 0.2 1.7 2 0 0 2 2 2 0 Nitronate monooxygenase DHO_dh PF01180.16 gi|352683067|ref|YP_004893591.1| - 0.036 13.0 0.0 0.081 11.8 0.0 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|352683067|ref|YP_004893591.1| - 0.055 12.5 0.6 4 6.4 0.0 2.4 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG TruD PF01142.13 gi|352683067|ref|YP_004893591.1| - 0.078 11.6 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 tRNA pseudouridine synthase D (TruD) Memo PF01875.12 gi|352683068|ref|YP_004893592.1| - 3.5e-76 255.6 0.0 4e-76 255.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|352683068|ref|YP_004893592.1| - 1.2e-07 31.0 0.0 1.8e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|352683069|ref|YP_004893593.1| - 6.9e-40 136.5 0.0 1e-21 77.1 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 ParA PF10609.4 gi|352683072|ref|YP_004893596.1| - 1.2e-27 95.6 0.2 2.7e-27 94.4 0.1 1.7 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|352683072|ref|YP_004893596.1| - 2.8e-13 49.7 0.1 1.4e-12 47.4 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|352683072|ref|YP_004893596.1| - 1.6e-05 24.1 1.3 8.6e-05 21.7 0.5 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|352683072|ref|YP_004893596.1| - 0.0001 22.2 0.0 0.00053 19.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|352683072|ref|YP_004893596.1| - 0.00047 19.8 0.2 0.26 10.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|352683072|ref|YP_004893596.1| - 0.0043 16.5 0.7 0.0086 15.5 0.4 1.5 1 1 1 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|352683072|ref|YP_004893596.1| - 0.0053 16.1 0.1 0.17 11.2 0.3 2.5 2 1 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|352683072|ref|YP_004893596.1| - 0.015 14.5 0.3 0.23 10.5 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|352683072|ref|YP_004893596.1| - 0.02 13.9 0.0 0.032 13.3 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ APS_kinase PF01583.15 gi|352683072|ref|YP_004893596.1| - 0.083 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase OrfB_IS605 PF01385.14 gi|352683073|ref|YP_004893597.1| - 0.014 14.7 0.0 0.016 14.6 0.0 1.0 1 0 0 1 1 1 0 Probable transposase DUF2283 PF10049.4 gi|352683073|ref|YP_004893597.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) OrfB_Zn_ribbon PF07282.6 gi|352683074|ref|YP_004893598.1| - 8.9e-13 47.6 0.0 1e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|352683074|ref|YP_004893598.1| - 0.05 13.5 5.2 0.28 11.2 0.2 2.2 1 1 1 2 2 2 0 zinc-finger DZR PF12773.2 gi|352683074|ref|YP_004893598.1| - 0.091 12.5 1.3 0.15 11.9 0.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|352683074|ref|YP_004893598.1| - 0.14 11.4 3.5 3.1 7.1 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|352683074|ref|YP_004893598.1| - 0.16 11.2 2.0 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|352683074|ref|YP_004893598.1| - 0.22 11.6 3.3 10 6.3 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-CCHC_5 PF14787.1 gi|352683074|ref|YP_004893598.1| - 0.37 10.3 6.7 4.4 6.8 1.0 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-FPG_IleRS PF06827.9 gi|352683074|ref|YP_004893598.1| - 0.4 10.3 9.8 0.44 10.2 5.3 2.2 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF1936 PF09151.5 gi|352683074|ref|YP_004893598.1| - 0.76 9.3 7.6 1.6 8.2 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zinc_ribbon_2 PF13240.1 gi|352683074|ref|YP_004893598.1| - 0.85 9.1 5.3 5.2 6.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|352683074|ref|YP_004893598.1| - 1.5 8.3 5.2 7.7 6.1 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|352683074|ref|YP_004893598.1| - 1.8 8.6 5.2 12 5.9 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 GATA PF00320.22 gi|352683074|ref|YP_004893598.1| - 2.2 7.7 5.9 3.9 6.9 0.5 2.2 1 1 1 2 2 2 0 GATA zinc finger zf-tcix PF14952.1 gi|352683074|ref|YP_004893598.1| - 6.5 6.1 7.7 8.5 5.8 0.5 2.4 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.4 gi|352683074|ref|YP_004893598.1| - 7.6 6.3 6.4 14 5.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 SHMT PF00464.14 gi|352683075|ref|YP_004893599.1| - 1.3e-71 241.1 0.0 1.6e-71 240.8 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|352683075|ref|YP_004893599.1| - 9.7e-09 34.7 0.0 1.3e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|352683075|ref|YP_004893599.1| - 5.9e-06 25.5 0.1 1.3e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|352683075|ref|YP_004893599.1| - 0.00019 20.5 0.0 0.00042 19.3 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|352683075|ref|YP_004893599.1| - 0.02 13.6 0.0 0.047 12.4 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class-V adh_short_C2 PF13561.1 gi|352683076|ref|YP_004893600.1| - 4.3e-36 124.8 0.0 5.2e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|352683076|ref|YP_004893600.1| - 9.2e-22 77.7 0.1 1.7e-21 76.8 0.1 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|352683076|ref|YP_004893600.1| - 4.5e-10 39.4 0.1 7.5e-10 38.7 0.1 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|352683076|ref|YP_004893600.1| - 0.0018 18.3 0.1 0.0029 17.6 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|352683076|ref|YP_004893600.1| - 0.012 16.0 0.3 0.024 15.0 0.2 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|352683076|ref|YP_004893600.1| - 0.017 15.2 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|352683076|ref|YP_004893600.1| - 0.034 13.7 0.3 0.057 13.0 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|352683076|ref|YP_004893600.1| - 0.12 11.3 0.2 0.27 10.3 0.1 1.6 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF3582 PF12122.3 gi|352683077|ref|YP_004893601.1| - 0.096 12.6 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3582) M-factor PF03855.8 gi|352683077|ref|YP_004893601.1| - 4.2 7.4 5.6 0.73 9.8 0.4 2.1 2 0 0 2 2 2 0 M-factor dCMP_cyt_deam_1 PF00383.17 gi|352683078|ref|YP_004893602.1| - 3.9e-19 68.1 0.1 4.5e-19 67.9 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|352683078|ref|YP_004893602.1| - 1.2e-12 47.9 0.2 1.8e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|352683078|ref|YP_004893602.1| - 0.0041 16.5 0.5 0.31 10.4 0.0 2.0 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases YwqJ-deaminase PF14431.1 gi|352683078|ref|YP_004893602.1| - 0.025 14.4 0.3 1.3 8.9 0.0 2.4 1 1 1 2 2 2 0 YwqJ-like deaminase MoaC PF01967.16 gi|352683079|ref|YP_004893603.1| - 4.2e-07 29.7 0.0 5e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 MoaC family MoaC PF01967.16 gi|352683080|ref|YP_004893604.1| - 7e-09 35.4 0.1 9.8e-07 28.5 0.0 2.8 2 1 1 3 3 3 2 MoaC family HTH_1 PF00126.22 gi|352683081|ref|YP_004893605.1| - 1.1e-11 44.2 0.0 1.6e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|352683081|ref|YP_004893605.1| - 0.00037 20.2 0.4 0.00067 19.4 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_28 PF13518.1 gi|352683081|ref|YP_004893605.1| - 0.0061 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|352683081|ref|YP_004893605.1| - 0.013 14.8 0.0 0.028 13.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|352683081|ref|YP_004893605.1| - 0.014 15.5 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_8 PF02954.14 gi|352683081|ref|YP_004893605.1| - 0.076 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_23 PF13384.1 gi|352683081|ref|YP_004893605.1| - 0.094 12.4 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain FerA PF08165.6 gi|352683081|ref|YP_004893605.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 FerA (NUC095) domain DNA_pol_lambd_f PF10391.4 gi|352683081|ref|YP_004893605.1| - 0.14 11.7 0.4 0.29 10.7 0.3 1.7 1 1 0 1 1 1 0 Fingers domain of DNA polymerase lambda Radical_SAM PF04055.16 gi|352683082|ref|YP_004893606.1| - 1.2e-25 90.6 0.0 2e-25 89.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|352683082|ref|YP_004893606.1| - 4.3e-24 84.6 0.0 6.1e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|352683082|ref|YP_004893606.1| - 4.6e-07 30.0 0.0 8.2e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|352683082|ref|YP_004893606.1| - 2.7e-06 27.3 0.0 6.3e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Pkinase PF00069.20 gi|352683083|ref|YP_004893607.1| - 3.1e-41 141.2 0.0 5.2e-41 140.5 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|352683083|ref|YP_004893607.1| - 5.3e-26 91.2 0.0 7.7e-26 90.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.21 gi|352683084|ref|YP_004893608.1| - 8.8e-14 51.3 0.1 1.1e-12 47.8 0.1 2.1 1 1 1 2 2 2 1 FHA domain zf-RanBP PF00641.13 gi|352683084|ref|YP_004893608.1| - 1e-06 27.7 1.2 1.4e-06 27.2 0.8 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|352683084|ref|YP_004893608.1| - 5.4e-05 22.2 1.7 8.6e-05 21.6 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352683084|ref|YP_004893608.1| - 8.6e-05 21.8 3.0 0.00014 21.1 2.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|352683084|ref|YP_004893608.1| - 0.0011 18.7 1.2 0.0016 18.2 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-Sec23_Sec24 PF04810.10 gi|352683084|ref|YP_004893608.1| - 0.045 13.3 2.2 0.75 9.4 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Kazal_1 PF00050.16 gi|352683084|ref|YP_004893608.1| - 0.1 12.6 0.2 0.17 11.9 0.2 1.4 1 0 0 1 1 1 0 Kazal-type serine protease inhibitor domain Rubredoxin PF00301.15 gi|352683084|ref|YP_004893608.1| - 1.2 9.0 3.7 2.8 7.8 1.0 2.1 2 0 0 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|352683084|ref|YP_004893608.1| - 2.1 7.7 5.5 5.7 6.3 3.8 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-tcix PF14952.1 gi|352683084|ref|YP_004893608.1| - 4.3 6.7 5.7 15 4.9 3.7 2.0 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Peptidase_M24 PF00557.19 gi|352683085|ref|YP_004893609.1| - 1.9e-45 155.0 0.0 2.2e-45 154.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF2697 PF10906.3 gi|352683085|ref|YP_004893609.1| - 0.086 12.8 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2697) Toprim_4 PF13662.1 gi|352683086|ref|YP_004893610.1| - 6.9e-07 29.1 0.6 2.1e-06 27.6 0.4 1.9 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|352683086|ref|YP_004893610.1| - 0.0099 15.8 0.7 0.062 13.2 0.1 2.4 2 0 0 2 2 2 1 Toprim domain Flavi_NS4A PF01350.12 gi|352683086|ref|YP_004893610.1| - 0.074 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4A Rad50_zn_hook PF04423.9 gi|352683086|ref|YP_004893610.1| - 8.3 5.9 7.6 1.8 8.1 2.5 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif DNA_pol_B PF00136.16 gi|352683087|ref|YP_004893611.1| - 4.3e-90 302.7 0.0 5.7e-90 302.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|352683087|ref|YP_004893611.1| - 7.4e-36 123.6 0.0 9.2e-35 120.0 0.0 2.5 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|352683087|ref|YP_004893611.1| - 3.7e-07 30.1 0.0 7.3e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|352683087|ref|YP_004893611.1| - 4.8e-05 22.9 0.0 8.9e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Ribosomal_L37e PF01907.14 gi|352683088|ref|YP_004893612.1| - 7.4e-23 80.1 11.8 7.9e-23 80.0 8.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|352683088|ref|YP_004893612.1| - 0.0039 16.9 1.7 0.005 16.6 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|352683088|ref|YP_004893612.1| - 0.072 12.3 5.7 0.29 10.3 3.9 1.9 1 1 0 1 1 1 0 zinc-ribbon domain NMD3 PF04981.8 gi|352683088|ref|YP_004893612.1| - 0.097 11.7 0.6 0.1 11.6 0.4 1.1 1 0 0 1 1 1 0 NMD3 family Cys_rich_CPCC PF14206.1 gi|352683088|ref|YP_004893612.1| - 0.13 11.7 0.9 0.15 11.5 0.6 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-FPG_IleRS PF06827.9 gi|352683088|ref|YP_004893612.1| - 0.16 11.6 5.5 0.15 11.7 2.7 1.9 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|352683088|ref|YP_004893612.1| - 0.17 11.8 2.7 0.32 10.9 0.1 2.0 1 1 1 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|352683088|ref|YP_004893612.1| - 0.23 11.1 2.4 0.28 10.8 1.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|352683088|ref|YP_004893612.1| - 0.29 10.9 2.5 0.4 10.5 1.7 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-B_box PF00643.19 gi|352683088|ref|YP_004893612.1| - 0.32 10.9 2.2 0.37 10.7 1.1 1.5 1 1 0 1 1 1 0 B-box zinc finger DUF164 PF02591.10 gi|352683088|ref|YP_004893612.1| - 0.32 10.8 2.6 0.73 9.7 0.2 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain Mu-like_Com PF10122.4 gi|352683088|ref|YP_004893612.1| - 0.49 9.4 4.0 0.24 10.4 1.7 1.5 1 1 0 1 1 1 0 Mu-like prophage protein Com FdhE PF04216.7 gi|352683088|ref|YP_004893612.1| - 0.65 9.6 3.1 0.67 9.6 2.2 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_2 PF13240.1 gi|352683088|ref|YP_004893612.1| - 0.68 9.4 6.1 3.2 7.3 4.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|352683088|ref|YP_004893612.1| - 0.83 9.5 4.7 0.75 9.7 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-NADH-PPase PF09297.6 gi|352683088|ref|YP_004893612.1| - 0.98 8.9 8.2 0.64 9.5 0.8 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|352683088|ref|YP_004893612.1| - 1.6 8.6 7.6 4 7.3 5.3 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|352683088|ref|YP_004893612.1| - 2 8.5 6.5 13 6.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) UPF0547 PF10571.4 gi|352683088|ref|YP_004893612.1| - 2.7 7.7 6.2 11 5.8 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 LSM PF01423.17 gi|352683089|ref|YP_004893613.1| - 3.2e-22 77.8 0.4 3.6e-22 77.6 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|352683089|ref|YP_004893613.1| - 1.5e-05 24.8 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Beta-Casp PF10996.3 gi|352683091|ref|YP_004893615.1| - 3.2e-32 111.1 0.0 9.7e-32 109.5 0.0 1.9 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|352683091|ref|YP_004893615.1| - 3.5e-21 75.7 0.2 6.3e-21 74.9 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|352683091|ref|YP_004893615.1| - 4.7e-13 48.7 0.0 1e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|352683091|ref|YP_004893615.1| - 3.4e-12 46.3 0.0 2.9e-11 43.2 0.0 2.4 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|352683091|ref|YP_004893615.1| - 0.0033 17.1 0.1 0.03 14.0 0.0 2.3 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Proteasome PF00227.21 gi|352683092|ref|YP_004893616.1| - 1e-53 181.4 0.0 1.3e-53 181.1 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit FKBP_C PF00254.23 gi|352683093|ref|YP_004893617.1| - 2.3e-11 43.5 0.0 4.9e-11 42.5 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Ribosomal_S17e PF00833.13 gi|352683094|ref|YP_004893618.1| - 2.2e-19 69.4 0.3 2.3e-19 69.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 SDH_sah PF01972.11 gi|352683094|ref|YP_004893618.1| - 0.0039 16.0 0.1 0.0042 15.9 0.1 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase DUF3243 PF11588.3 gi|352683094|ref|YP_004893618.1| - 0.0043 17.0 0.0 0.0063 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3243) Cpn60_TCP1 PF00118.19 gi|352683095|ref|YP_004893619.1| - 8.8e-169 562.1 3.2 1e-168 561.9 2.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.12 gi|352683095|ref|YP_004893619.1| - 2.5e-05 24.0 1.4 0.018 14.7 0.4 2.4 2 0 0 2 2 2 2 DAK2 domain HTH_OrfB_IS605 PF12323.3 gi|352683096|ref|YP_004893620.1| - 0.54 9.6 1.9 12 5.3 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain T2SE PF00437.15 gi|352683097|ref|YP_004893621.1| - 1.7e-21 76.3 0.0 2.2e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|352683097|ref|YP_004893621.1| - 5.5e-07 29.9 0.4 1.4e-05 25.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|352683097|ref|YP_004893621.1| - 5.6e-06 27.1 0.6 5.9e-05 23.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|352683097|ref|YP_004893621.1| - 5e-05 23.4 0.0 0.00032 20.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|352683097|ref|YP_004893621.1| - 8.9e-05 22.1 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|352683097|ref|YP_004893621.1| - 0.00013 21.8 1.3 0.00024 20.9 0.0 2.2 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|352683097|ref|YP_004893621.1| - 0.00041 20.3 0.0 0.00064 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|352683097|ref|YP_004893621.1| - 0.0006 19.2 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_29 PF13555.1 gi|352683097|ref|YP_004893621.1| - 0.00092 18.6 0.0 0.0021 17.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|352683097|ref|YP_004893621.1| - 0.0014 17.7 0.0 0.0033 16.5 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin AAA_10 PF12846.2 gi|352683097|ref|YP_004893621.1| - 0.0018 17.7 0.0 0.0026 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain NACHT PF05729.7 gi|352683097|ref|YP_004893621.1| - 0.0025 17.4 0.0 0.0048 16.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|352683097|ref|YP_004893621.1| - 0.0027 18.0 0.0 0.0043 17.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter cobW PF02492.14 gi|352683097|ref|YP_004893621.1| - 0.0037 16.7 0.0 0.0078 15.6 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|352683097|ref|YP_004893621.1| - 0.0042 17.2 3.0 0.067 13.3 2.1 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|352683097|ref|YP_004893621.1| - 0.0043 16.7 0.0 0.012 15.3 0.0 1.8 1 0 0 1 1 1 1 NTPase AAA_23 PF13476.1 gi|352683097|ref|YP_004893621.1| - 0.0049 17.2 4.7 0.021 15.1 3.0 2.2 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|352683097|ref|YP_004893621.1| - 0.0058 16.3 0.4 0.0058 16.3 0.3 1.8 2 0 0 2 2 2 1 Archaeal ATPase AAA_21 PF13304.1 gi|352683097|ref|YP_004893621.1| - 0.0073 16.3 0.9 0.0073 16.3 0.6 3.7 1 1 2 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|352683097|ref|YP_004893621.1| - 0.008 16.0 0.0 0.014 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|352683097|ref|YP_004893621.1| - 0.0081 15.7 0.0 0.025 14.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|352683097|ref|YP_004893621.1| - 0.011 14.9 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|352683097|ref|YP_004893621.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|352683097|ref|YP_004893621.1| - 0.015 14.9 0.5 0.067 12.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|352683097|ref|YP_004893621.1| - 0.017 15.2 0.0 0.045 13.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.13 gi|352683097|ref|YP_004893621.1| - 0.018 14.5 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_11 PF13086.1 gi|352683097|ref|YP_004893621.1| - 0.022 14.3 0.0 0.041 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|352683097|ref|YP_004893621.1| - 0.025 13.7 0.0 0.046 12.9 0.0 1.5 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_25 PF13481.1 gi|352683097|ref|YP_004893621.1| - 0.031 13.6 0.0 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|352683097|ref|YP_004893621.1| - 0.044 13.5 0.2 0.12 12.1 0.1 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DAP3 PF10236.4 gi|352683097|ref|YP_004893621.1| - 0.072 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Viral_helicase1 PF01443.13 gi|352683097|ref|YP_004893621.1| - 0.086 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|352683097|ref|YP_004893621.1| - 0.091 12.2 0.4 1.2 8.6 0.0 2.4 1 1 2 3 3 3 0 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|352683097|ref|YP_004893621.1| - 0.11 12.2 0.0 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|352683097|ref|YP_004893621.1| - 0.12 11.1 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 ArgK protein TFIIB PF00382.14 gi|352683098|ref|YP_004893622.1| - 2.8e-08 33.4 0.0 1e-07 31.6 0.0 1.9 1 1 1 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|352683098|ref|YP_004893622.1| - 1.3e-06 27.5 0.6 2.4e-06 26.7 0.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|352683098|ref|YP_004893622.1| - 2e-05 23.8 2.5 4.9e-05 22.6 1.7 1.7 1 0 0 1 1 1 1 A2L zinc ribbon domain RRN7 PF11781.3 gi|352683098|ref|YP_004893622.1| - 0.0083 15.6 1.0 0.015 14.8 0.7 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 HTH_23 PF13384.1 gi|352683098|ref|YP_004893622.1| - 0.022 14.3 0.1 0.08 12.6 0.0 2.0 1 1 1 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.7 gi|352683098|ref|YP_004893622.1| - 0.099 12.3 0.6 0.32 10.6 0.2 2.0 2 0 0 2 2 2 0 HTH domain DUF2757 PF10955.3 gi|352683098|ref|YP_004893622.1| - 0.17 12.1 2.2 2.5 8.3 0.9 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2757) OrfB_Zn_ribbon PF07282.6 gi|352683098|ref|YP_004893622.1| - 0.17 11.5 0.6 0.36 10.5 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|352683098|ref|YP_004893622.1| - 0.35 10.1 1.8 1.2 8.4 1.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352683098|ref|YP_004893622.1| - 0.58 9.7 2.5 13 5.4 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb8 PF03870.10 gi|352683099|ref|YP_004893623.1| - 0.0053 16.9 0.1 0.0061 16.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb8 Lsm_C PF14894.1 gi|352683101|ref|YP_004893625.1| - 9.6e-27 92.2 1.1 1.4e-26 91.7 0.7 1.3 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.17 gi|352683101|ref|YP_004893625.1| - 2.9e-10 39.5 0.6 5.3e-10 38.6 0.4 1.5 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|352683101|ref|YP_004893625.1| - 9.8e-08 31.8 0.8 2.1e-07 30.7 0.1 1.8 2 1 0 2 2 2 1 Ataxin 2 SM domain TGT PF01702.13 gi|352683102|ref|YP_004893626.1| - 3.6e-48 163.9 0.0 1.1e-47 162.3 0.0 1.7 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PAC2 PF09754.4 gi|352683103|ref|YP_004893627.1| - 2e-29 103.0 0.0 2.5e-29 102.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TFIIE_alpha PF02002.12 gi|352683104|ref|YP_004893628.1| - 3.8e-06 26.3 0.3 3.8e-06 26.3 0.2 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|352683104|ref|YP_004893628.1| - 0.016 14.5 1.2 0.85 8.9 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|352683104|ref|YP_004893628.1| - 0.021 14.5 2.8 0.084 12.5 2.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF3140 PF11338.3 gi|352683104|ref|YP_004893628.1| - 0.022 14.8 0.0 0.081 13.0 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3140) zinc_ribbon_5 PF13719.1 gi|352683104|ref|YP_004893628.1| - 0.026 14.1 2.5 0.11 12.0 1.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF722 PF05263.6 gi|352683104|ref|YP_004893628.1| - 0.052 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF722) PhnA_Zn_Ribbon PF08274.7 gi|352683104|ref|YP_004893628.1| - 0.061 13.1 0.2 0.88 9.4 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TrmB PF01978.14 gi|352683104|ref|YP_004893628.1| - 0.099 12.3 0.7 0.37 10.5 0.0 2.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HypA PF01155.14 gi|352683104|ref|YP_004893628.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2 PF00096.21 gi|352683104|ref|YP_004893628.1| - 0.54 10.7 2.4 1.3 9.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Sgf11 PF08209.6 gi|352683104|ref|YP_004893628.1| - 1.1 8.5 4.0 0.79 9.0 0.5 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_4 PF14570.1 gi|352683104|ref|YP_004893628.1| - 2.2 7.9 6.2 13 5.4 4.4 2.0 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain Prok-RING_4 PF14447.1 gi|352683104|ref|YP_004893628.1| - 3.3 7.3 4.9 22 4.6 0.4 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 MMR_HSR1 PF01926.18 gi|352683105|ref|YP_004893629.1| - 1.9e-17 63.2 0.0 3.7e-17 62.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|352683105|ref|YP_004893629.1| - 2.9e-07 29.8 0.0 8.9e-07 28.3 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|352683105|ref|YP_004893629.1| - 3.3e-06 26.6 0.0 0.00067 19.1 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|352683105|ref|YP_004893629.1| - 1.1e-05 25.4 0.0 2.9e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal Ras PF00071.17 gi|352683105|ref|YP_004893629.1| - 0.0094 15.3 0.0 0.017 14.4 0.0 1.5 1 1 0 1 1 1 1 Ras family AAA_28 PF13521.1 gi|352683105|ref|YP_004893629.1| - 0.017 15.1 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|352683105|ref|YP_004893629.1| - 0.021 14.3 0.0 2.6 7.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|352683105|ref|YP_004893629.1| - 0.022 13.9 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|352683105|ref|YP_004893629.1| - 0.034 14.6 0.0 0.078 13.4 0.0 1.7 1 1 0 1 1 1 0 Miro-like protein NTPase_1 PF03266.10 gi|352683105|ref|YP_004893629.1| - 0.047 13.4 1.9 1.1 8.9 0.1 2.6 2 1 1 3 3 3 0 NTPase AAA_14 PF13173.1 gi|352683105|ref|YP_004893629.1| - 0.059 13.2 0.1 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|352683105|ref|YP_004893629.1| - 0.067 12.3 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|352683105|ref|YP_004893629.1| - 0.15 11.8 0.0 0.35 10.5 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B HTH_3 PF01381.17 gi|352683106|ref|YP_004893630.1| - 1.3e-14 53.7 1.9 3.3e-14 52.4 1.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|352683106|ref|YP_004893630.1| - 8.5e-11 41.7 0.2 2.1e-10 40.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|352683106|ref|YP_004893630.1| - 1.4e-09 38.0 1.8 9.1e-09 35.3 0.1 2.9 3 1 1 4 4 4 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|352683106|ref|YP_004893630.1| - 6.8e-06 25.6 0.5 2.2e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|352683106|ref|YP_004893630.1| - 0.00018 21.6 0.7 0.0003 20.8 0.5 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_37 PF13744.1 gi|352683106|ref|YP_004893630.1| - 0.07 12.9 0.0 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Nudix_N_2 PF14803.1 gi|352683106|ref|YP_004893630.1| - 0.18 11.5 1.0 0.41 10.3 0.7 1.6 1 0 0 1 1 1 0 Nudix N-terminal PUA PF01472.15 gi|352683107|ref|YP_004893631.1| - 7.9e-14 51.1 0.1 1.1e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|352683107|ref|YP_004893631.1| - 1.3e-06 28.1 0.0 2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase FAINT PF04385.10 gi|352683107|ref|YP_004893631.1| - 0.0015 18.3 0.6 0.0023 17.7 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function, DUF529 DUF2339 PF10101.4 gi|352683109|ref|YP_004893633.1| - 0.0066 14.7 2.9 0.008 14.5 2.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2339) DUF4079 PF13301.1 gi|352683109|ref|YP_004893633.1| - 0.011 15.6 4.0 0.23 11.4 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4079) DUF2955 PF11168.3 gi|352683109|ref|YP_004893633.1| - 0.046 13.3 2.4 0.076 12.6 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2955) DUF2776 PF10951.3 gi|352683109|ref|YP_004893633.1| - 0.095 11.7 1.4 0.11 11.5 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2776) MFS_1 PF07690.11 gi|352683109|ref|YP_004893633.1| - 0.13 10.9 7.3 0.16 10.6 5.1 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily MerC PF03203.9 gi|352683109|ref|YP_004893633.1| - 0.15 12.3 4.4 0.12 12.7 2.4 1.4 1 1 0 1 1 1 0 MerC mercury resistance protein Cytochrom_B_N PF00033.14 gi|352683109|ref|YP_004893633.1| - 1.8 7.9 5.5 2.3 7.5 3.8 1.4 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF805 PF05656.9 gi|352683109|ref|YP_004893633.1| - 3.9 7.3 8.7 6.3 6.6 6.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Lon_C PF05362.8 gi|352683110|ref|YP_004893634.1| - 4.5e-13 48.9 3.7 7.7e-13 48.2 2.6 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|352683110|ref|YP_004893634.1| - 0.023 14.1 0.0 0.049 13.1 0.0 1.5 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase SIR2 PF02146.12 gi|352683111|ref|YP_004893635.1| - 3.9e-57 192.8 0.0 4.8e-57 192.5 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.5 gi|352683111|ref|YP_004893635.1| - 0.011 15.7 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Mu-like_Com PF10122.4 gi|352683111|ref|YP_004893635.1| - 0.1 11.7 1.6 0.19 10.8 1.1 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com Zn_ribbon_recom PF13408.1 gi|352683111|ref|YP_004893635.1| - 0.4 10.9 1.6 11 6.3 0.1 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-TFIIB PF13453.1 gi|352683111|ref|YP_004893635.1| - 0.79 8.9 3.0 1.7 7.9 2.1 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-Sec23_Sec24 PF04810.10 gi|352683111|ref|YP_004893635.1| - 2.2 7.9 4.6 5 6.7 0.2 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-FPG_IleRS PF06827.9 gi|352683111|ref|YP_004893635.1| - 3.2 7.4 5.7 8.1 6.1 0.5 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF123 PF01986.11 gi|352683112|ref|YP_004893636.1| - 2.6e-18 65.9 0.0 3.5e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B_2 PF12706.2 gi|352683113|ref|YP_004893637.1| - 0.0005 19.6 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|352683113|ref|YP_004893637.1| - 0.00092 18.9 4.6 0.0056 16.3 3.2 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PP2C PF00481.16 gi|352683113|ref|YP_004893637.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C Trigger_C PF05698.9 gi|352683114|ref|YP_004893638.1| - 0.0077 16.0 0.9 0.085 12.6 0.3 2.1 2 0 0 2 2 2 1 Bacterial trigger factor protein (TF) C-terminus tRNA-synt_His PF13393.1 gi|352683114|ref|YP_004893638.1| - 0.014 14.4 0.1 0.016 14.3 0.0 1.1 1 0 0 1 1 1 0 Histidyl-tRNA synthetase Peptidase_S8 PF00082.17 gi|352683115|ref|YP_004893639.1| - 5e-08 32.4 0.1 1.6e-07 30.7 0.0 1.7 2 0 0 2 2 2 1 Subtilase family Pro-kuma_activ PF09286.6 gi|352683115|ref|YP_004893639.1| - 5.4e-08 32.9 0.0 9.7e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain DUF165 PF02592.10 gi|352683116|ref|YP_004893640.1| - 5.5e-28 97.9 7.3 5.5e-28 97.9 5.1 1.9 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 VitK2_biosynth PF02621.9 gi|352683117|ref|YP_004893641.1| - 1.6e-69 233.8 0.0 1.8e-69 233.7 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.9 gi|352683118|ref|YP_004893642.1| - 8.1e-32 110.3 0.0 9.4e-32 110.1 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis GST_C PF00043.20 gi|352683118|ref|YP_004893642.1| - 0.052 13.5 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Radical_SAM PF04055.16 gi|352683119|ref|YP_004893643.1| - 1.8e-13 50.9 0.0 2.9e-12 47.0 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily PASTA PF03793.14 gi|352683119|ref|YP_004893643.1| - 0.015 14.9 0.0 8 6.1 0.0 2.8 2 0 0 2 2 2 0 PASTA domain Radical_SAM PF04055.16 gi|352683120|ref|YP_004893644.1| - 1.6e-18 67.4 0.0 3.1e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Amidohydro_4 PF13147.1 gi|352683121|ref|YP_004893645.1| - 3.3e-15 56.8 1.6 2.5e-13 50.6 1.1 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|352683121|ref|YP_004893645.1| - 5.3e-15 55.8 0.0 7.2e-14 52.1 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|352683121|ref|YP_004893645.1| - 4.9e-08 32.6 0.0 1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|352683121|ref|YP_004893645.1| - 3.2e-05 23.3 0.3 0.24 10.5 0.0 2.8 1 1 1 2 2 2 2 Amidohydrolase family DUF86 PF01934.12 gi|352683122|ref|YP_004893646.1| - 1.4e-05 24.7 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF86 PF01934.12 gi|352683123|ref|YP_004893647.1| - 0.0087 15.7 0.0 0.0098 15.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|352683124|ref|YP_004893648.1| - 0.0029 17.8 0.0 0.0037 17.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|352683124|ref|YP_004893648.1| - 0.14 11.4 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Predicted nucleotidyltransferase MFS_1 PF07690.11 gi|352683125|ref|YP_004893649.1| - 7.8e-23 80.7 56.2 2.8e-13 49.3 15.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily VWA_2 PF13519.1 gi|352683126|ref|YP_004893650.1| - 2.7e-10 40.6 0.1 5.8e-08 33.0 0.0 3.0 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|352683126|ref|YP_004893650.1| - 1.3e-05 24.4 0.0 3.2e-05 23.2 0.0 1.5 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|352683126|ref|YP_004893650.1| - 0.00061 19.5 0.0 0.02 14.6 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain V_ATPase_I PF01496.14 gi|352683127|ref|YP_004893651.1| - 5.7e-25 87.3 12.4 2.5e-17 62.0 0.1 2.8 2 2 1 3 3 3 2 V-type ATPase 116kDa subunit family GATase_6 PF13522.1 gi|352683128|ref|YP_004893652.1| - 1.1e-10 41.5 0.1 3.3e-10 40.0 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|352683128|ref|YP_004893652.1| - 5.3e-09 35.8 0.4 1.3e-08 34.6 0.3 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_7 PF13537.1 gi|352683128|ref|YP_004893652.1| - 5.2e-07 29.4 0.0 1.5e-06 27.9 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|352683128|ref|YP_004893652.1| - 7.4e-06 24.9 0.0 0.013 14.2 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|352683129|ref|YP_004893653.1| - 4.7e-18 65.1 1.4 6.9e-18 64.5 1.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|352683129|ref|YP_004893653.1| - 0.058 12.7 0.0 0.21 10.8 0.0 1.8 1 1 0 1 1 1 0 Phosphoribosyl transferase GATase_5 PF13507.1 gi|352683130|ref|YP_004893654.1| - 7.6e-35 120.0 0.0 2e-33 115.3 0.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|352683130|ref|YP_004893654.1| - 4.2e-08 32.8 0.0 4.8e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|352683130|ref|YP_004893654.1| - 5.3e-08 32.6 0.0 9.1e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|352683130|ref|YP_004893654.1| - 5.4e-08 32.4 0.0 1.4e-07 31.0 0.0 1.6 2 0 0 2 2 2 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|352683130|ref|YP_004893654.1| - 0.00016 21.0 0.0 0.00047 19.4 0.0 1.7 2 0 0 2 2 2 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|352683130|ref|YP_004893654.1| - 0.00093 18.6 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 PurS PF02700.9 gi|352683131|ref|YP_004893655.1| - 1.4e-11 44.1 0.0 1.7e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GARS_A PF01071.14 gi|352683132|ref|YP_004893656.1| - 1.9e-38 131.9 0.0 2.7e-38 131.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|352683132|ref|YP_004893656.1| - 7.4e-21 74.4 0.0 1.3e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|352683132|ref|YP_004893656.1| - 9e-15 54.6 4.5 3.2e-14 52.8 0.1 3.1 4 0 0 4 4 4 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|352683132|ref|YP_004893656.1| - 1.2e-10 41.4 0.1 4.4e-10 39.5 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|352683132|ref|YP_004893656.1| - 5.6e-06 25.3 0.0 1.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|352683132|ref|YP_004893656.1| - 0.0013 18.6 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|352683132|ref|YP_004893656.1| - 0.016 14.5 0.0 0.029 13.6 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain SAICAR_synt PF01259.13 gi|352683133|ref|YP_004893657.1| - 4.9e-41 140.4 0.0 6e-41 140.1 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase Pab87_oct PF13969.1 gi|352683133|ref|YP_004893657.1| - 0.1 12.7 0.0 0.36 10.9 0.0 1.9 2 1 0 2 2 2 0 Pab87 octamerisation domain AIRS_C PF02769.17 gi|352683134|ref|YP_004893658.1| - 1.3e-14 54.4 0.0 2.6e-14 53.5 0.0 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|352683134|ref|YP_004893658.1| - 2.6e-12 46.8 0.2 5e-12 45.9 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain THF_DHG_CYH_C PF02882.14 gi|352683135|ref|YP_004893659.1| - 1.6e-42 144.3 0.0 2.6e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|352683135|ref|YP_004893659.1| - 8.2e-19 67.7 0.0 1.3e-18 67.1 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Formyl_trans_N PF00551.14 gi|352683136|ref|YP_004893660.1| - 1.8e-29 102.5 0.0 2.7e-29 102.0 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase DUF4508 PF14969.1 gi|352683136|ref|YP_004893660.1| - 0.015 15.2 0.2 0.025 14.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4508) ATP-grasp PF02222.17 gi|352683137|ref|YP_004893661.1| - 8.9e-44 148.8 0.0 1.5e-43 148.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|352683137|ref|YP_004893661.1| - 5.8e-09 35.9 0.1 1.5e-08 34.5 0.1 1.6 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|352683137|ref|YP_004893661.1| - 0.02 14.3 0.0 4.8 6.6 0.0 2.7 3 0 0 3 3 3 0 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|352683137|ref|YP_004893661.1| - 0.04 13.1 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain M20_dimer PF07687.9 gi|352683137|ref|YP_004893661.1| - 0.061 13.0 0.0 0.88 9.3 0.0 2.6 3 0 0 3 3 3 0 Peptidase dimerisation domain ATPgrasp_Ter PF15632.1 gi|352683137|ref|YP_004893661.1| - 0.1 11.3 0.0 0.42 9.3 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.14 gi|352683137|ref|YP_004893661.1| - 0.12 11.8 0.0 0.71 9.3 0.0 2.1 2 1 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AIRC PF00731.15 gi|352683138|ref|YP_004893662.1| - 4e-61 204.7 0.1 4.4e-61 204.5 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase AIRS_C PF02769.17 gi|352683139|ref|YP_004893663.1| - 2.5e-45 154.1 3.6 7.8e-25 87.6 0.4 3.0 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|352683139|ref|YP_004893663.1| - 4.6e-42 142.1 0.4 4.3e-23 81.3 0.0 2.8 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain Tegument_dsDNA PF12818.2 gi|352683139|ref|YP_004893663.1| - 5.8e-05 22.0 0.0 0.14 10.9 0.0 3.2 3 0 0 3 3 3 2 dsDNA viral tegument protein ABC_tran PF00005.22 gi|352683141|ref|YP_004893665.1| - 2.3e-28 99.1 0.0 3e-28 98.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352683141|ref|YP_004893665.1| - 1.1e-10 41.9 0.9 0.0002 21.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|352683141|ref|YP_004893665.1| - 2.1e-06 27.0 0.0 0.00034 19.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|352683141|ref|YP_004893665.1| - 5.9e-05 23.1 0.4 0.00032 20.7 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|352683141|ref|YP_004893665.1| - 7.6e-05 23.1 0.1 0.00013 22.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|352683141|ref|YP_004893665.1| - 0.00045 19.4 0.0 0.00073 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|352683141|ref|YP_004893665.1| - 0.00084 18.6 0.3 0.98 8.5 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|352683141|ref|YP_004893665.1| - 0.0024 18.6 0.5 0.016 16.0 0.4 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|352683141|ref|YP_004893665.1| - 0.0024 17.3 0.1 0.0061 16.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|352683141|ref|YP_004893665.1| - 0.0033 17.5 0.1 0.02 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|352683141|ref|YP_004893665.1| - 0.013 15.2 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|352683141|ref|YP_004893665.1| - 0.037 14.2 0.0 0.17 12.0 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|352683141|ref|YP_004893665.1| - 0.037 13.4 0.0 0.3 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|352683141|ref|YP_004893665.1| - 0.041 12.4 0.1 4.8 5.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|352683141|ref|YP_004893665.1| - 0.081 12.3 0.1 0.22 10.9 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.1 gi|352683141|ref|YP_004893665.1| - 0.17 11.4 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|352683142|ref|YP_004893666.1| - 2.3e-17 63.1 45.5 1.5e-10 40.9 10.7 3.6 2 1 1 3 3 3 3 Binding-protein-dependent transport system inner membrane component ProSAAS PF07259.7 gi|352683142|ref|YP_004893666.1| - 0.0027 17.2 2.3 0.0046 16.5 1.6 1.4 1 1 0 1 1 1 1 ProSAAS precursor T2SF PF00482.18 gi|352683142|ref|YP_004893666.1| - 0.13 12.1 0.0 0.13 12.1 0.0 3.0 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein F QueF PF14489.1 gi|352683144|ref|YP_004893668.1| - 1.3e-08 34.6 0.2 1.6e-08 34.3 0.1 1.2 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.17 gi|352683144|ref|YP_004893668.1| - 0.00021 20.6 0.4 0.00025 20.3 0.3 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase I ABC_tran PF00005.22 gi|352683145|ref|YP_004893669.1| - 3e-26 92.3 0.0 4.7e-26 91.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352683145|ref|YP_004893669.1| - 1.9e-11 44.4 0.0 7e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|352683145|ref|YP_004893669.1| - 0.00025 21.0 0.7 0.00044 20.2 0.1 1.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|352683145|ref|YP_004893669.1| - 0.0013 18.2 0.1 0.0027 17.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|352683145|ref|YP_004893669.1| - 0.0024 17.5 0.1 0.0053 16.4 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|352683145|ref|YP_004893669.1| - 0.0056 15.4 0.3 0.01 14.6 0.2 1.4 1 0 0 1 1 1 1 ArgK protein UPF0079 PF02367.12 gi|352683145|ref|YP_004893669.1| - 0.008 15.8 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|352683145|ref|YP_004893669.1| - 0.0093 16.1 0.0 0.027 14.6 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|352683145|ref|YP_004893669.1| - 0.014 15.1 1.2 0.031 14.0 0.2 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|352683145|ref|YP_004893669.1| - 0.015 15.4 0.0 0.027 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|352683145|ref|YP_004893669.1| - 0.015 14.7 0.0 0.021 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|352683145|ref|YP_004893669.1| - 0.016 15.5 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|352683145|ref|YP_004893669.1| - 0.019 14.6 0.0 0.047 13.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|352683145|ref|YP_004893669.1| - 0.023 14.2 0.6 0.065 12.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|352683145|ref|YP_004893669.1| - 0.029 13.6 0.0 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|352683145|ref|YP_004893669.1| - 0.031 14.1 0.2 0.068 13.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|352683145|ref|YP_004893669.1| - 0.032 13.3 0.1 0.073 12.2 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|352683145|ref|YP_004893669.1| - 0.035 14.0 0.1 0.14 12.0 0.0 2.0 3 1 0 3 3 2 0 AAA domain HTH_11 PF08279.7 gi|352683145|ref|YP_004893669.1| - 0.045 13.4 1.3 0.3 10.7 0.1 2.9 4 0 0 4 4 4 0 HTH domain DUF87 PF01935.12 gi|352683145|ref|YP_004893669.1| - 0.057 13.2 0.1 0.15 11.8 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|352683145|ref|YP_004893669.1| - 0.065 12.4 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|352683145|ref|YP_004893669.1| - 0.069 13.1 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|352683145|ref|YP_004893669.1| - 0.071 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|352683145|ref|YP_004893669.1| - 0.077 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein SRP54 PF00448.17 gi|352683145|ref|YP_004893669.1| - 0.11 11.9 0.1 0.18 11.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|352683145|ref|YP_004893669.1| - 0.15 12.2 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 RNA helicase ABC2_membrane PF01061.19 gi|352683146|ref|YP_004893670.1| - 2.9e-06 26.5 22.1 2.9e-06 26.5 15.3 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|352683146|ref|YP_004893670.1| - 0.13 11.2 36.1 0.12 11.3 24.0 1.5 1 1 1 2 2 2 0 ABC-2 family transporter protein Trm112p PF03966.11 gi|352683147|ref|YP_004893671.1| - 3.9e-19 68.7 1.7 7e-19 67.9 1.1 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-ribbon_3 PF13248.1 gi|352683147|ref|YP_004893671.1| - 0.0094 15.1 0.5 0.0094 15.1 0.3 2.1 3 1 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352683147|ref|YP_004893671.1| - 0.015 14.7 0.2 0.015 14.7 0.2 2.3 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|352683147|ref|YP_004893671.1| - 0.13 12.0 4.5 0.33 10.8 3.1 1.6 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|352683147|ref|YP_004893671.1| - 0.14 11.8 0.4 0.19 11.3 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF164 PF02591.10 gi|352683147|ref|YP_004893671.1| - 0.4 10.5 2.5 8.9 6.2 1.8 2.5 1 1 1 2 2 2 0 Putative zinc ribbon domain DUF35_N PF12172.3 gi|352683147|ref|YP_004893671.1| - 1.1 9.1 0.1 1.1 9.1 0.0 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DHHA1 PF02272.14 gi|352683148|ref|YP_004893672.1| - 3.4e-07 29.8 0.0 8.5e-07 28.5 0.0 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|352683148|ref|YP_004893672.1| - 1.5e-06 27.9 0.0 2.7e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 DHH family UIM PF02809.15 gi|352683148|ref|YP_004893672.1| - 0.18 11.4 0.3 0.38 10.4 0.2 1.5 1 0 0 1 1 1 0 Ubiquitin interaction motif HHH PF00633.18 gi|352683149|ref|YP_004893673.1| - 0.014 15.0 0.0 0.032 13.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif HRDC PF00570.18 gi|352683149|ref|YP_004893673.1| - 0.024 14.3 0.0 0.057 13.1 0.0 1.6 1 0 0 1 1 1 0 HRDC domain Whib PF02467.11 gi|352683149|ref|YP_004893673.1| - 0.052 13.8 0.6 0.11 12.7 0.4 1.6 1 0 0 1 1 1 0 Transcription factor WhiB EndIII_4Fe-2S PF10576.4 gi|352683149|ref|YP_004893673.1| - 0.36 11.0 3.2 0.77 10.0 2.2 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Radical_SAM PF04055.16 gi|352683150|ref|YP_004893674.1| - 2.4e-16 60.3 0.0 4e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|352683150|ref|YP_004893674.1| - 6.2e-09 35.9 0.0 9.4e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|352683150|ref|YP_004893674.1| - 2.8e-08 33.9 0.0 4.3e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain OrfB_Zn_ribbon PF07282.6 gi|352683151|ref|YP_004893675.1| - 2.8e-12 46.0 0.0 4.8e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|352683151|ref|YP_004893675.1| - 0.00037 20.2 0.5 0.00058 19.6 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|352683151|ref|YP_004893675.1| - 0.00054 19.4 4.9 0.0013 18.1 3.4 1.6 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|352683151|ref|YP_004893675.1| - 0.00065 19.1 0.2 0.0011 18.3 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|352683151|ref|YP_004893675.1| - 0.0056 15.8 3.3 0.088 12.0 2.6 2.1 1 1 1 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|352683151|ref|YP_004893675.1| - 0.013 15.2 2.0 0.019 14.6 1.4 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|352683151|ref|YP_004893675.1| - 0.018 14.4 2.2 0.033 13.6 1.5 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.1 gi|352683151|ref|YP_004893675.1| - 0.02 14.6 1.0 0.031 14.0 0.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Lar_restr_allev PF14354.1 gi|352683151|ref|YP_004893675.1| - 0.024 14.9 1.0 0.53 10.6 0.0 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar Auto_anti-p27 PF06677.7 gi|352683151|ref|YP_004893675.1| - 0.031 14.0 0.4 0.052 13.3 0.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cys_rich_CPCC PF14206.1 gi|352683151|ref|YP_004893675.1| - 0.033 13.7 0.4 0.054 13.0 0.3 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC CheR_N PF03705.10 gi|352683151|ref|YP_004893675.1| - 0.037 13.3 3.9 2.3 7.6 0.0 2.6 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain RNHCP PF12647.2 gi|352683151|ref|YP_004893675.1| - 0.065 13.0 0.2 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 RNHCP domain DUF4391 PF14335.1 gi|352683151|ref|YP_004893675.1| - 0.081 12.2 1.1 0.12 11.7 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) C1_1 PF00130.17 gi|352683151|ref|YP_004893675.1| - 0.092 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1610 PF07754.6 gi|352683151|ref|YP_004893675.1| - 0.098 12.7 1.8 5.5 7.1 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.7 gi|352683151|ref|YP_004893675.1| - 0.13 11.6 5.9 0.41 10.0 0.3 2.4 1 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|352683151|ref|YP_004893675.1| - 0.15 11.9 1.3 9 6.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|352683151|ref|YP_004893675.1| - 0.16 11.6 4.4 0.58 9.8 3.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|352683151|ref|YP_004893675.1| - 0.2 10.9 4.3 0.67 9.2 3.0 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF2387 PF09526.5 gi|352683151|ref|YP_004893675.1| - 0.25 11.2 1.9 0.68 9.8 1.3 1.7 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-C2H2_4 PF13894.1 gi|352683151|ref|YP_004893675.1| - 0.38 11.1 3.4 23 5.6 0.0 3.6 3 0 0 3 3 3 0 C2H2-type zinc finger zf-tcix PF14952.1 gi|352683151|ref|YP_004893675.1| - 0.4 10.0 2.7 7.2 6.0 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RRN7 PF11781.3 gi|352683151|ref|YP_004893675.1| - 1.5 8.3 4.3 4.8 6.7 0.7 2.3 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DNA_ligase_ZBD PF03119.11 gi|352683151|ref|YP_004893675.1| - 5.4 6.8 6.9 23 4.8 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|352683151|ref|YP_004893675.1| - 8 6.0 12.6 2.4 7.6 0.5 3.5 2 1 1 3 3 3 0 Rad50 zinc hook motif Topoisom_bac PF01131.15 gi|352683152|ref|YP_004893676.1| - 7.1e-92 308.3 0.1 1e-91 307.7 0.1 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|352683152|ref|YP_004893676.1| - 1.4e-19 69.9 0.0 1.9e-18 66.2 0.0 2.9 3 0 0 3 3 3 1 Toprim domain DEAD PF00270.24 gi|352683152|ref|YP_004893676.1| - 4.2e-11 42.6 0.0 1.6e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|352683152|ref|YP_004893676.1| - 2.2e-06 27.4 0.1 1 9.3 0.0 4.2 4 0 0 4 4 4 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|352683152|ref|YP_004893676.1| - 6.2e-06 26.1 0.0 1.2e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|352683152|ref|YP_004893676.1| - 0.0022 17.4 0.1 0.0065 15.8 0.1 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|352683152|ref|YP_004893676.1| - 0.0051 16.5 0.1 0.019 14.7 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain Cast PF10174.4 gi|352683152|ref|YP_004893676.1| - 0.029 12.4 0.3 0.058 11.4 0.2 1.4 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone DUF87 PF01935.12 gi|352683152|ref|YP_004893676.1| - 0.038 13.7 0.2 0.16 11.7 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|352683152|ref|YP_004893676.1| - 0.1 12.0 0.1 0.28 10.5 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain ETF_alpha PF00766.14 gi|352683153|ref|YP_004893677.1| - 4.4e-29 99.9 0.0 7.8e-29 99.1 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|352683153|ref|YP_004893677.1| - 6.6e-17 61.7 0.8 1.1e-16 61.0 0.6 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|352683154|ref|YP_004893678.1| - 1.4e-37 128.8 3.1 2.1e-37 128.3 2.1 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Pyr_redox_2 PF07992.9 gi|352683155|ref|YP_004893679.1| - 2.9e-23 82.8 4.6 2e-09 37.6 0.1 4.1 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|352683155|ref|YP_004893679.1| - 9.5e-11 42.1 0.3 2.4e-05 24.4 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|352683155|ref|YP_004893679.1| - 2.4e-10 40.6 4.1 3.5e-05 24.1 0.2 2.6 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|352683155|ref|YP_004893679.1| - 3.8e-06 26.8 2.8 1.5e-05 24.8 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|352683155|ref|YP_004893679.1| - 1.8e-05 24.4 0.3 0.0012 18.3 0.0 2.8 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.19 gi|352683155|ref|YP_004893679.1| - 5.1e-05 22.3 7.4 0.092 11.5 0.2 3.3 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|352683155|ref|YP_004893679.1| - 0.0003 19.4 3.0 0.00035 19.1 0.2 2.2 3 0 0 3 3 3 1 HI0933-like protein Shikimate_DH PF01488.15 gi|352683155|ref|YP_004893679.1| - 0.0005 20.1 1.0 0.046 13.8 0.0 2.9 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|352683155|ref|YP_004893679.1| - 0.00051 20.2 0.1 1.3 9.3 0.0 2.4 2 1 0 2 2 2 2 Putative NAD(P)-binding GIDA PF01134.17 gi|352683155|ref|YP_004893679.1| - 0.00059 18.8 4.6 0.057 12.2 0.2 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|352683155|ref|YP_004893679.1| - 0.0017 17.9 1.2 0.13 11.9 0.1 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|352683155|ref|YP_004893679.1| - 0.0031 16.6 0.1 0.11 11.6 0.0 2.7 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FMO-like PF00743.14 gi|352683155|ref|YP_004893679.1| - 0.0083 14.3 0.0 0.31 9.2 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like DAO PF01266.19 gi|352683155|ref|YP_004893679.1| - 0.011 14.7 2.7 0.68 8.7 0.4 2.9 3 0 0 3 3 3 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|352683155|ref|YP_004893679.1| - 0.028 13.4 3.6 0.75 8.7 0.0 2.5 3 0 0 3 3 3 0 FAD binding domain GIDE PF12483.3 gi|352683155|ref|YP_004893679.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 E3 Ubiquitin ligase FAD_oxidored PF12831.2 gi|352683155|ref|YP_004893679.1| - 0.13 11.3 6.0 1.5 7.7 0.3 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF2338 PF10100.4 gi|352683155|ref|YP_004893679.1| - 0.16 10.3 0.0 0.3 9.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2338) K_oxygenase PF13434.1 gi|352683155|ref|YP_004893679.1| - 0.22 10.3 0.0 1.9 7.3 0.0 2.3 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|352683155|ref|YP_004893679.1| - 0.71 9.6 3.3 2.6 7.8 0.2 3.0 4 0 0 4 4 4 0 FAD-NAD(P)-binding Cytidylate_kin2 PF13189.1 gi|352683156|ref|YP_004893680.1| - 5e-21 75.4 1.3 7.9e-20 71.5 0.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|352683156|ref|YP_004893680.1| - 1.5e-14 54.4 0.2 2e-14 53.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|352683156|ref|YP_004893680.1| - 1.5e-11 45.1 2.8 3.6e-11 43.9 1.1 2.0 1 1 1 2 2 2 1 AAA domain Cytidylate_kin PF02224.13 gi|352683156|ref|YP_004893680.1| - 1.5e-06 27.7 0.9 2.2e-06 27.2 0.7 1.2 1 0 0 1 1 1 1 Cytidylate kinase SKI PF01202.17 gi|352683156|ref|YP_004893680.1| - 8e-06 25.8 0.9 2.1e-05 24.4 0.6 1.7 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.13 gi|352683156|ref|YP_004893680.1| - 0.00017 21.1 0.2 0.02 14.4 0.0 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.7 gi|352683156|ref|YP_004893680.1| - 0.00042 19.4 0.0 0.00087 18.4 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|352683156|ref|YP_004893680.1| - 0.0005 19.9 0.5 0.0036 17.1 0.2 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|352683156|ref|YP_004893680.1| - 0.0031 17.5 0.6 0.0089 16.0 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|352683156|ref|YP_004893680.1| - 0.0056 16.6 1.1 0.025 14.5 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|352683156|ref|YP_004893680.1| - 0.0076 16.4 0.0 0.015 15.5 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|352683156|ref|YP_004893680.1| - 0.0076 16.1 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase KTI12 PF08433.5 gi|352683156|ref|YP_004893680.1| - 0.01 15.0 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|352683156|ref|YP_004893680.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|352683156|ref|YP_004893680.1| - 0.015 14.9 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.1 gi|352683156|ref|YP_004893680.1| - 0.019 14.5 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|352683156|ref|YP_004893680.1| - 0.024 14.3 0.1 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|352683156|ref|YP_004893680.1| - 0.025 14.7 0.0 0.054 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|352683156|ref|YP_004893680.1| - 0.025 14.8 0.0 0.035 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RBD PF02196.10 gi|352683156|ref|YP_004893680.1| - 0.035 13.8 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Raf-like Ras-binding domain UPF0079 PF02367.12 gi|352683156|ref|YP_004893680.1| - 0.052 13.1 0.0 0.081 12.5 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|352683156|ref|YP_004893680.1| - 0.062 12.9 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.14 gi|352683156|ref|YP_004893680.1| - 0.1 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DEK_C PF08766.6 gi|352683156|ref|YP_004893680.1| - 0.1 12.3 0.3 43 3.9 0.0 3.3 3 0 0 3 3 3 0 DEK C terminal domain NB-ARC PF00931.17 gi|352683156|ref|YP_004893680.1| - 0.12 11.2 0.1 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|352683156|ref|YP_004893680.1| - 0.14 11.5 0.3 1.7 8.0 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain Ribosomal_L34e PF01199.13 gi|352683157|ref|YP_004893681.1| - 8e-21 74.0 2.0 8.6e-21 73.9 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e ABC_tran PF00005.22 gi|352683158|ref|YP_004893682.1| - 1.6e-17 64.0 0.0 1.3e-16 61.1 0.0 2.3 2 2 1 3 3 2 1 ABC transporter AAA_21 PF13304.1 gi|352683158|ref|YP_004893682.1| - 6.1e-17 62.5 0.1 2.3e-08 34.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|352683158|ref|YP_004893682.1| - 9.7e-10 38.0 0.0 0.00021 20.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|352683158|ref|YP_004893682.1| - 2.6e-07 30.0 0.0 0.0049 15.9 0.0 2.0 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|352683158|ref|YP_004893682.1| - 1.1e-06 29.1 0.0 1.6e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|352683158|ref|YP_004893682.1| - 0.00058 18.4 0.0 0.0016 17.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|352683158|ref|YP_004893682.1| - 0.00099 17.7 0.4 0.031 12.8 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|352683158|ref|YP_004893682.1| - 0.0017 17.8 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|352683158|ref|YP_004893682.1| - 0.0087 16.0 0.4 0.019 14.9 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|352683158|ref|YP_004893682.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|352683158|ref|YP_004893682.1| - 0.015 14.7 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|352683158|ref|YP_004893682.1| - 0.015 14.7 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|352683158|ref|YP_004893682.1| - 0.025 14.1 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|352683158|ref|YP_004893682.1| - 0.028 14.6 0.1 0.08 13.1 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MutS_V PF00488.16 gi|352683158|ref|YP_004893682.1| - 0.03 13.7 0.0 0.14 11.5 0.0 2.0 2 1 0 2 2 2 0 MutS domain V NACHT PF05729.7 gi|352683158|ref|YP_004893682.1| - 0.033 13.8 0.0 0.065 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|352683158|ref|YP_004893682.1| - 0.038 13.9 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|352683158|ref|YP_004893682.1| - 0.038 13.5 0.1 0.066 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|352683158|ref|YP_004893682.1| - 0.043 13.0 0.0 0.084 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|352683158|ref|YP_004893682.1| - 0.044 14.2 0.0 0.14 12.6 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein cobW PF02492.14 gi|352683158|ref|YP_004893682.1| - 0.045 13.1 0.0 0.073 12.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|352683158|ref|YP_004893682.1| - 0.049 13.3 0.4 0.11 12.3 0.1 1.8 2 0 0 2 2 1 0 Part of AAA domain AAA_17 PF13207.1 gi|352683158|ref|YP_004893682.1| - 0.052 14.3 0.7 0.15 12.8 0.4 2.0 1 1 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|352683158|ref|YP_004893682.1| - 0.056 13.3 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|352683158|ref|YP_004893682.1| - 0.061 10.6 0.2 0.079 10.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.1 gi|352683158|ref|YP_004893682.1| - 0.069 13.0 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|352683158|ref|YP_004893682.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|352683158|ref|YP_004893682.1| - 0.1 12.3 0.1 0.26 10.9 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|352683158|ref|YP_004893682.1| - 0.11 12.1 0.4 0.67 9.6 0.0 2.2 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|352683158|ref|YP_004893682.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|352683158|ref|YP_004893682.1| - 0.2 11.9 0.4 1 9.6 0.3 2.1 1 1 0 1 1 1 0 AAA domain FecCD PF01032.13 gi|352683159|ref|YP_004893683.1| - 4.9e-58 196.3 31.4 6e-58 196.1 21.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|352683159|ref|YP_004893683.1| - 2.2e-05 23.8 15.6 5.5e-05 22.5 10.8 1.8 1 1 0 1 1 1 1 ABC 3 transport family Tim17 PF02466.14 gi|352683159|ref|YP_004893683.1| - 0.13 12.2 5.6 3.2 7.8 0.4 2.6 2 0 0 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family TMEMspv1-c74-12 PF11044.3 gi|352683159|ref|YP_004893683.1| - 0.53 9.8 2.5 5.7 6.5 0.2 2.5 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Peripla_BP_2 PF01497.13 gi|352683160|ref|YP_004893684.1| - 1.7e-28 99.3 0.0 2.4e-28 98.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Mucin PF01456.12 gi|352683160|ref|YP_004893684.1| - 1.7 8.4 16.6 3 7.6 11.5 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein NurA PF09376.5 gi|352683161|ref|YP_004893685.1| - 2e-27 96.2 0.0 4.1e-27 95.2 0.0 1.5 1 1 0 1 1 1 1 NurA domain PNP_UDP_1 PF01048.15 gi|352683162|ref|YP_004893686.1| - 4.3e-40 137.1 0.0 4.9e-40 136.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily SUI1 PF01253.17 gi|352683164|ref|YP_004893688.1| - 5.8e-19 67.6 0.8 7.7e-19 67.2 0.5 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 CcmH PF03918.9 gi|352683164|ref|YP_004893688.1| - 0.065 12.2 0.0 0.09 11.7 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein tRNA-synt_1d PF00750.14 gi|352683166|ref|YP_004893690.1| - 1.2e-48 165.7 0.4 5.4e-32 110.9 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|352683166|ref|YP_004893690.1| - 1.4e-29 102.4 0.0 2.1e-28 98.6 0.0 2.8 2 1 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1g PF09334.6 gi|352683166|ref|YP_004893690.1| - 0.00067 18.4 0.0 0.058 12.0 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (M) PRP38 PF03371.10 gi|352683166|ref|YP_004893690.1| - 0.0042 16.7 0.0 0.0091 15.6 0.0 1.5 1 0 0 1 1 1 1 PRP38 family tRNA-synt_1e PF01406.14 gi|352683166|ref|YP_004893690.1| - 0.0091 15.1 0.1 0.057 12.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|352683166|ref|YP_004893690.1| - 0.014 13.4 0.2 1.3 6.9 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (I, L, M and V) Ribosomal_L7Ae PF01248.21 gi|352683167|ref|YP_004893691.1| - 1.2e-28 98.4 0.6 1.6e-28 98.0 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|352683167|ref|YP_004893691.1| - 0.0025 17.5 0.1 0.0036 17.0 0.1 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|352683167|ref|YP_004893691.1| - 0.0061 16.4 0.0 0.0069 16.2 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 Ribosomal_L24e PF01246.15 gi|352683168|ref|YP_004893692.1| - 2.3e-19 69.0 0.4 2.4e-19 68.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|352683168|ref|YP_004893692.1| - 0.0021 17.6 0.5 0.003 17.1 0.4 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.11 gi|352683168|ref|YP_004893692.1| - 0.0074 15.9 1.8 0.017 14.7 1.3 1.6 1 1 0 1 1 1 1 HIT zinc finger DUF2175 PF09943.4 gi|352683168|ref|YP_004893692.1| - 0.01 15.8 0.1 0.011 15.8 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) Desulfoferrod_N PF06397.7 gi|352683168|ref|YP_004893692.1| - 0.03 13.7 0.2 0.052 12.9 0.2 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|352683168|ref|YP_004893692.1| - 0.043 13.0 0.2 0.078 12.2 0.1 1.4 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S28e PF01200.13 gi|352683169|ref|YP_004893693.1| - 5.3e-32 109.3 3.4 6e-32 109.1 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|352683169|ref|YP_004893693.1| - 0.49 10.1 0.3 0.49 10.1 0.2 2.7 3 1 0 3 3 3 0 KOW motif DUF131 PF01998.12 gi|352683170|ref|YP_004893694.1| - 8.8e-09 34.5 7.2 8.8e-09 34.5 5.0 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF2788 PF10981.3 gi|352683170|ref|YP_004893694.1| - 0.04 13.6 1.9 0.04 13.6 1.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2788) P12 PF12669.2 gi|352683170|ref|YP_004893694.1| - 0.16 12.1 0.3 0.16 12.1 0.2 2.4 2 1 0 2 2 2 0 Virus attachment protein p12 family DUF3397 PF11877.3 gi|352683170|ref|YP_004893694.1| - 0.25 11.3 4.4 0.27 11.2 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3397) DUF202 PF02656.10 gi|352683170|ref|YP_004893694.1| - 0.53 10.5 9.2 1.9 8.7 6.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) LrgA PF03788.9 gi|352683170|ref|YP_004893694.1| - 0.58 9.8 10.9 0.86 9.3 7.6 1.2 1 0 0 1 1 1 0 LrgA family DUF3149 PF11346.3 gi|352683170|ref|YP_004893694.1| - 0.63 9.6 0.1 0.63 9.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) GPI2 PF06432.6 gi|352683170|ref|YP_004893694.1| - 0.74 9.1 3.9 0.84 8.9 2.7 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase Sugar_tr PF00083.19 gi|352683170|ref|YP_004893694.1| - 1.9 6.9 10.5 2 6.8 7.3 1.2 1 0 0 1 1 1 0 Sugar (and other) transporter Oxidored_q2 PF00420.19 gi|352683170|ref|YP_004893694.1| - 2.3 7.8 11.7 6.7 6.3 8.1 1.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF872 PF05915.7 gi|352683170|ref|YP_004893694.1| - 3.6 7.4 6.1 1.3 8.9 1.5 1.9 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) MerC PF03203.9 gi|352683170|ref|YP_004893694.1| - 6.4 7.1 11.3 0.32 11.3 2.7 1.9 1 1 1 2 2 2 0 MerC mercury resistance protein DUF131 PF01998.12 gi|352683171|ref|YP_004893695.1| - 1.1e-18 66.2 3.1 1.1e-18 66.2 2.2 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF131 Oxidored_q2 PF00420.19 gi|352683171|ref|YP_004893695.1| - 0.01 15.3 3.6 0.017 14.7 2.5 1.3 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Claudin_2 PF13903.1 gi|352683171|ref|YP_004893695.1| - 0.017 14.7 0.8 0.025 14.2 0.5 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF872 PF05915.7 gi|352683171|ref|YP_004893695.1| - 0.026 14.3 0.9 0.026 14.3 0.6 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) TctB PF07331.6 gi|352683171|ref|YP_004893695.1| - 0.21 11.2 7.0 1.8 8.2 4.8 1.9 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF202 PF02656.10 gi|352683171|ref|YP_004893695.1| - 0.34 11.1 3.9 0.93 9.7 2.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) 7tm_3 PF00003.17 gi|352683171|ref|YP_004893695.1| - 0.35 10.1 6.2 0.22 10.8 0.9 2.0 2 0 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR PIRT PF15099.1 gi|352683171|ref|YP_004893695.1| - 1.1 8.4 4.8 11 5.2 1.0 2.2 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family DUF4282 PF14110.1 gi|352683171|ref|YP_004893695.1| - 1.4 9.1 9.2 0.2 11.8 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4282) DUF751 PF05421.6 gi|352683171|ref|YP_004893695.1| - 2 8.7 8.0 7.4 6.9 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF751) DUF1049 PF06305.6 gi|352683171|ref|YP_004893695.1| - 3 7.3 8.1 2.4 7.6 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF3955 PF13127.1 gi|352683171|ref|YP_004893695.1| - 7 6.2 10.8 2.3 7.8 1.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) 4HBT PF03061.17 gi|352683172|ref|YP_004893696.1| - 9.1e-15 54.5 0.1 1.4e-14 53.9 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|352683172|ref|YP_004893696.1| - 0.00082 19.1 0.0 0.00096 18.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.1 gi|352683172|ref|YP_004893696.1| - 0.0068 16.3 0.0 0.0083 16.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) Peptidase_M48 PF01435.13 gi|352683173|ref|YP_004893697.1| - 3.8e-31 108.4 0.1 7.7e-31 107.4 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 MFS_1 PF07690.11 gi|352683174|ref|YP_004893698.1| - 2.9e-39 134.7 52.4 2.9e-39 134.7 36.3 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily OATP PF03137.15 gi|352683174|ref|YP_004893698.1| - 0.019 13.0 4.2 1.5 6.7 0.0 3.0 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Homoserine_dh PF00742.14 gi|352683175|ref|YP_004893699.1| - 3.7e-40 137.4 0.1 2.1e-39 135.0 0.1 2.0 1 1 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|352683175|ref|YP_004893699.1| - 1.8e-05 25.1 0.0 6.6e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|352683175|ref|YP_004893699.1| - 0.0026 17.6 0.0 0.0058 16.5 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.16 gi|352683175|ref|YP_004893699.1| - 0.004 16.7 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.19 gi|352683175|ref|YP_004893699.1| - 0.04 13.8 0.2 0.074 13.0 0.1 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|352683175|ref|YP_004893699.1| - 0.078 11.9 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase Na_H_Exchanger PF00999.16 gi|352683176|ref|YP_004893700.1| - 7.1e-56 189.3 45.7 8.6e-56 189.0 31.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Semialdhyde_dh PF01118.19 gi|352683177|ref|YP_004893701.1| - 8.1e-35 119.7 0.0 1.4e-34 119.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|352683177|ref|YP_004893701.1| - 3.5e-33 115.0 0.0 5.8e-33 114.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|352683177|ref|YP_004893701.1| - 0.0032 17.3 0.0 0.0056 16.6 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|352683177|ref|YP_004893701.1| - 0.0034 17.8 0.0 0.0072 16.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|352683177|ref|YP_004893701.1| - 0.073 13.0 0.2 0.38 10.7 0.1 2.2 2 1 0 2 2 2 0 NADH(P)-binding AA_kinase PF00696.23 gi|352683178|ref|YP_004893702.1| - 3.5e-45 154.4 0.0 5.4e-45 153.8 0.0 1.3 2 0 0 2 2 2 1 Amino acid kinase family PALP PF00291.20 gi|352683179|ref|YP_004893703.1| - 1.2e-70 238.1 0.6 1.4e-70 237.9 0.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peptidase_S49 PF01343.13 gi|352683180|ref|YP_004893704.1| - 1.2e-17 64.0 1.6 1.5e-07 31.3 0.6 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|352683180|ref|YP_004893704.1| - 6.4e-10 38.9 0.0 5.2e-08 32.7 0.0 2.2 2 0 0 2 2 2 2 Clp protease ABC_transp_aux PF09822.4 gi|352683180|ref|YP_004893704.1| - 1.1e-06 28.3 0.0 1.5e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|352683180|ref|YP_004893704.1| - 0.03 14.5 0.0 0.092 12.9 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) MarC PF01914.12 gi|352683181|ref|YP_004893705.1| - 1.2e-28 99.5 16.8 1.5e-28 99.2 11.7 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Acetyltransf_1 PF00583.19 gi|352683182|ref|YP_004893706.1| - 1.8e-11 43.8 0.6 1.3e-10 41.1 0.1 2.1 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|352683182|ref|YP_004893706.1| - 1.1e-07 31.4 0.1 2.7e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|352683182|ref|YP_004893706.1| - 2.2e-07 30.9 0.2 3.5e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|352683182|ref|YP_004893706.1| - 0.001 18.9 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|352683182|ref|YP_004893706.1| - 0.0021 18.2 0.0 0.004 17.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|352683182|ref|YP_004893706.1| - 0.025 14.4 0.0 0.085 12.7 0.0 1.9 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|352683182|ref|YP_004893706.1| - 0.049 13.8 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|352683182|ref|YP_004893706.1| - 0.057 13.2 0.1 0.12 12.2 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain YrbL-PhoP_reg PF10707.4 gi|352683182|ref|YP_004893706.1| - 0.13 11.5 0.0 0.63 9.3 0.0 1.9 2 0 0 2 2 2 0 PhoP regulatory network protein YrbL ATP-grasp_5 PF13549.1 gi|352683183|ref|YP_004893707.1| - 1.1e-75 253.6 0.1 1.2e-75 253.5 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|352683183|ref|YP_004893707.1| - 1e-05 25.3 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|352683183|ref|YP_004893707.1| - 4.4e-05 22.9 0.1 8.7e-05 21.9 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.6 gi|352683183|ref|YP_004893707.1| - 0.00065 19.2 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|352683183|ref|YP_004893707.1| - 0.0014 17.9 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|352683183|ref|YP_004893707.1| - 0.035 13.4 0.0 0.099 11.9 0.0 1.7 2 0 0 2 2 2 0 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|352683184|ref|YP_004893708.1| - 8.2e-52 174.4 0.9 1.5e-50 170.3 0.2 3.0 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|352683184|ref|YP_004893708.1| - 3.6e-24 85.1 1.4 9.4e-24 83.8 0.2 2.3 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|352683184|ref|YP_004893708.1| - 1.5e-12 47.8 0.2 3.5e-12 46.6 0.2 1.7 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|352683184|ref|YP_004893708.1| - 3.9e-05 23.4 0.1 0.00021 21.0 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Peripla_BP_3 PF13377.1 gi|352683184|ref|YP_004893708.1| - 0.011 15.6 0.3 3.9 7.4 0.0 3.3 3 3 0 3 3 3 0 Periplasmic binding protein-like domain F420_oxidored PF03807.12 gi|352683184|ref|YP_004893708.1| - 0.039 14.3 0.3 0.18 12.2 0.1 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|352683184|ref|YP_004893708.1| - 0.11 12.8 0.0 0.39 11.0 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.12 gi|352683184|ref|YP_004893708.1| - 0.13 11.1 0.0 0.23 10.3 0.0 1.4 1 0 0 1 1 1 0 Prephenate dehydrogenase Zea_mays_MuDR PF05928.6 gi|352683185|ref|YP_004893709.1| - 0.095 12.1 0.1 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) Ribosomal_L40e PF01020.12 gi|352683186|ref|YP_004893710.1| - 1.7e-06 27.5 5.2 1.8e-06 27.4 3.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-ribbon_3 PF13248.1 gi|352683186|ref|YP_004893710.1| - 5.5e-06 25.4 4.9 7.1e-06 25.0 3.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|352683186|ref|YP_004893710.1| - 5.8e-06 25.6 3.2 7.6e-06 25.2 2.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|352683186|ref|YP_004893710.1| - 0.00011 21.9 1.1 0.00012 21.7 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|352683186|ref|YP_004893710.1| - 0.00023 20.1 3.4 0.00029 19.8 2.4 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DUF35_N PF12172.3 gi|352683186|ref|YP_004893710.1| - 0.0016 18.2 2.3 0.0021 17.8 1.6 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|352683186|ref|YP_004893710.1| - 0.0028 17.3 0.4 0.0032 17.1 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|352683186|ref|YP_004893710.1| - 0.018 14.5 7.1 0.083 12.3 4.9 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit XPA_N PF01286.13 gi|352683186|ref|YP_004893710.1| - 0.032 13.9 0.8 1.6 8.5 0.1 2.1 2 0 0 2 2 2 0 XPA protein N-terminal zf-IS66 PF13005.2 gi|352683186|ref|YP_004893710.1| - 0.037 13.9 2.9 0.21 11.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.6 gi|352683186|ref|YP_004893710.1| - 0.074 12.7 2.9 0.11 12.1 2.0 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|352683186|ref|YP_004893710.1| - 0.11 11.8 2.9 5 6.5 0.1 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-DHHC PF01529.15 gi|352683186|ref|YP_004893710.1| - 0.16 11.3 1.3 0.16 11.3 0.9 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase zf-FPG_IleRS PF06827.9 gi|352683186|ref|YP_004893710.1| - 0.19 11.3 3.8 2.3 7.9 0.4 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-ISL3 PF14690.1 gi|352683186|ref|YP_004893710.1| - 0.32 11.0 3.7 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|352683186|ref|YP_004893710.1| - 0.32 10.6 2.5 4.6 6.9 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|352683186|ref|YP_004893710.1| - 0.39 10.5 5.1 1.1 9.1 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|352683186|ref|YP_004893710.1| - 0.45 10.3 7.3 1.1 9.0 3.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|352683186|ref|YP_004893710.1| - 0.49 10.1 6.4 0.46 10.2 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-HIT PF04438.11 gi|352683186|ref|YP_004893710.1| - 0.69 9.6 5.6 1.3 8.7 3.9 1.5 1 1 0 1 1 1 0 HIT zinc finger zf-MYND PF01753.13 gi|352683186|ref|YP_004893710.1| - 0.8 9.6 3.8 1.1 9.1 2.6 1.3 1 0 0 1 1 1 0 MYND finger zf-CCHC PF00098.18 gi|352683186|ref|YP_004893710.1| - 0.81 9.7 7.9 6 6.9 0.5 2.3 2 0 0 2 2 2 0 Zinc knuckle DUF2688 PF10892.3 gi|352683186|ref|YP_004893710.1| - 1 9.0 4.0 3.3 7.4 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) Zn-ribbon_8 PF09723.5 gi|352683186|ref|YP_004893710.1| - 1.8 8.5 4.7 49 3.9 3.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-CCHC_6 PF15288.1 gi|352683186|ref|YP_004893710.1| - 5.6 6.7 9.9 9.6 5.9 1.0 2.2 2 0 0 2 2 2 0 Zinc knuckle Fer4_15 PF13459.1 gi|352683187|ref|YP_004893711.1| - 4.8e-12 46.2 0.3 5.4e-12 46.1 0.2 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|352683187|ref|YP_004893711.1| - 3.8e-09 36.7 0.1 5.3e-09 36.3 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|352683187|ref|YP_004893711.1| - 0.0019 17.9 0.2 0.0077 16.0 0.2 1.8 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|352683187|ref|YP_004893711.1| - 0.01 15.3 1.9 0.24 11.0 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352683187|ref|YP_004893711.1| - 0.09 12.6 0.5 0.25 11.2 0.1 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain HypA PF01155.14 gi|352683188|ref|YP_004893712.1| - 0.00032 20.3 0.2 0.00042 19.9 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|352683188|ref|YP_004893712.1| - 0.00052 19.8 3.3 0.00089 19.1 2.3 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|352683188|ref|YP_004893712.1| - 0.019 14.4 1.0 0.036 13.5 0.7 1.5 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|352683188|ref|YP_004893712.1| - 0.034 13.8 5.6 0.43 10.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|352683188|ref|YP_004893712.1| - 0.071 12.8 0.2 0.071 12.8 0.2 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Dus PF01207.12 gi|352683188|ref|YP_004893712.1| - 0.081 11.7 0.0 0.082 11.7 0.0 1.0 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) DZR PF12773.2 gi|352683188|ref|YP_004893712.1| - 0.18 11.6 2.8 0.47 10.3 2.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|352683188|ref|YP_004893712.1| - 0.26 11.1 1.9 1.7 8.4 0.4 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF4379 PF14311.1 gi|352683188|ref|YP_004893712.1| - 0.44 10.3 5.7 0.91 9.3 4.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) zf-C2H2_4 PF13894.1 gi|352683188|ref|YP_004893712.1| - 0.54 10.7 4.5 1.8 9.0 0.5 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin PF00301.15 gi|352683188|ref|YP_004893712.1| - 2 8.3 4.6 30 4.5 3.2 2.2 1 1 0 1 1 1 0 Rubredoxin NUDIX PF00293.23 gi|352683190|ref|YP_004893714.1| - 4.3e-21 74.9 0.0 5.3e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|352683190|ref|YP_004893714.1| - 0.00028 20.2 0.0 0.00038 19.8 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain Carb_kinase PF01256.12 gi|352683191|ref|YP_004893715.1| - 9.4e-58 195.3 0.9 1.5e-57 194.6 0.6 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|352683191|ref|YP_004893715.1| - 5.6e-45 152.9 0.6 5.6e-45 152.9 0.4 2.0 3 0 0 3 3 3 1 YjeF-related protein N-terminus HK PF02110.10 gi|352683191|ref|YP_004893715.1| - 2e-09 37.0 0.1 4.1e-09 35.9 0.1 1.6 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|352683191|ref|YP_004893715.1| - 0.0022 17.2 0.1 0.0048 16.1 0.0 1.5 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Peptidase_M16 PF00675.15 gi|352683192|ref|YP_004893716.1| - 2.7e-18 66.1 0.0 6.2e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|352683192|ref|YP_004893716.1| - 5.2e-13 49.0 0.0 9.9e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase M16 inactive domain Wyosine_form PF08608.7 gi|352683193|ref|YP_004893717.1| - 4.3e-20 71.5 0.0 7.8e-20 70.7 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|352683193|ref|YP_004893717.1| - 9.1e-20 71.4 0.0 5.2e-19 69.0 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily HAD_2 PF13419.1 gi|352683193|ref|YP_004893717.1| - 0.00058 20.1 0.1 0.0027 17.9 0.0 2.0 1 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Fer4_12 PF13353.1 gi|352683193|ref|YP_004893717.1| - 0.092 12.8 0.1 0.34 11.0 0.1 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|352683193|ref|YP_004893717.1| - 0.14 12.1 0.2 0.49 10.4 0.1 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain Pterin_bind PF00809.17 gi|352683195|ref|YP_004893719.1| - 0.06 12.7 0.0 0.068 12.5 0.0 1.1 1 0 0 1 1 1 0 Pterin binding enzyme DUF499 PF04465.7 gi|352683196|ref|YP_004893720.1| - 0.022 12.3 0.1 0.022 12.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF499) DUF3363 PF11843.3 gi|352683196|ref|YP_004893720.1| - 0.074 11.6 0.1 0.092 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) Nuc_deoxyrib_tr PF05014.10 gi|352683197|ref|YP_004893721.1| - 0.0028 17.4 0.0 0.013 15.3 0.0 2.1 3 0 0 3 3 3 1 Nucleoside 2-deoxyribosyltransferase DUF4480 PF13715.1 gi|352683198|ref|YP_004893722.1| - 9.2e-06 25.6 0.3 0.0013 18.7 0.1 3.6 2 1 0 3 3 3 1 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|352683198|ref|YP_004893722.1| - 1.2e-05 25.2 3.5 1.2e-05 25.2 2.4 5.8 5 2 1 6 6 6 2 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|352683198|ref|YP_004893722.1| - 0.0092 15.7 0.0 0.16 11.7 0.0 2.9 2 0 0 2 2 2 1 Cna protein B-type domain Cupin_2 PF07883.6 gi|352683199|ref|YP_004893723.1| - 7.3e-14 51.0 0.0 9.2e-14 50.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|352683199|ref|YP_004893723.1| - 4e-10 39.5 0.0 4.9e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.9 gi|352683199|ref|YP_004893723.1| - 5.5e-05 23.1 0.0 7.4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_1 PF00190.17 gi|352683199|ref|YP_004893723.1| - 0.00011 21.6 0.1 0.00025 20.5 0.1 1.5 1 1 0 1 1 1 1 Cupin Cupin_6 PF12852.2 gi|352683199|ref|YP_004893723.1| - 0.00084 19.0 0.1 0.00095 18.8 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|352683199|ref|YP_004893723.1| - 0.01 15.2 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|352683199|ref|YP_004893723.1| - 0.029 13.9 0.0 0.036 13.6 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase KduI PF04962.7 gi|352683199|ref|YP_004893723.1| - 0.033 13.2 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family AraC_binding_2 PF14525.1 gi|352683199|ref|YP_004893723.1| - 0.039 13.5 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain TPP_enzyme_C PF02775.16 gi|352683200|ref|YP_004893724.1| - 4.6e-28 97.7 0.3 7.2e-28 97.0 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PK_C PF02887.11 gi|352683200|ref|YP_004893724.1| - 0.037 13.5 0.0 0.54 9.8 0.0 2.3 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain POR_N PF01855.14 gi|352683201|ref|YP_004893725.1| - 1.2e-73 247.4 1.8 1.2e-73 247.4 1.3 1.6 3 0 0 3 3 3 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|352683201|ref|YP_004893725.1| - 5.7e-07 29.5 0.0 1.4e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|352683202|ref|YP_004893726.1| - 5.8e-14 51.0 15.4 1.2e-07 31.0 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|352683202|ref|YP_004893726.1| - 4.3e-11 42.5 7.1 5.6e-11 42.1 4.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|352683202|ref|YP_004893726.1| - 3.6e-09 36.0 13.9 1.1e-05 25.0 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|352683202|ref|YP_004893726.1| - 5.8e-09 35.6 8.4 0.00031 20.4 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|352683202|ref|YP_004893726.1| - 7.1e-09 35.9 10.3 1.2e-08 35.1 7.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|352683202|ref|YP_004893726.1| - 7.2e-09 35.0 12.5 0.00022 20.9 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|352683202|ref|YP_004893726.1| - 1.9e-08 34.8 21.5 9.6e-06 26.2 7.3 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|352683202|ref|YP_004893726.1| - 1.7e-07 31.4 11.2 2.3e-07 30.9 7.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|352683202|ref|YP_004893726.1| - 4.7e-06 26.5 8.3 7.4e-06 25.8 5.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|352683202|ref|YP_004893726.1| - 2.4e-05 24.2 12.3 0.00082 19.5 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|352683202|ref|YP_004893726.1| - 0.00011 22.5 8.4 0.0029 17.9 0.1 2.4 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|352683202|ref|YP_004893726.1| - 0.00011 22.6 9.0 0.078 13.5 1.9 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|352683202|ref|YP_004893726.1| - 0.0012 19.1 11.7 0.015 15.5 8.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|352683202|ref|YP_004893726.1| - 0.039 14.3 14.2 0.092 13.1 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|352683202|ref|YP_004893726.1| - 2.3 8.9 16.2 0.25 12.0 4.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|352683203|ref|YP_004893727.1| - 3.2e-37 128.0 0.6 5.7e-37 127.2 0.4 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AFOR_N PF02730.10 gi|352683204|ref|YP_004893728.1| - 1.2e-24 86.8 0.1 2e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|352683204|ref|YP_004893728.1| - 1.5e-13 50.2 0.1 8.3e-13 47.7 0.0 2.1 2 1 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CBS PF00571.23 gi|352683205|ref|YP_004893729.1| - 2e-31 107.4 1.6 1.2e-14 53.7 0.1 2.1 2 0 0 2 2 2 2 CBS domain Rib_5-P_isom_A PF06026.9 gi|352683206|ref|YP_004893730.1| - 2.7e-46 157.0 0.0 3.2e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|352683206|ref|YP_004893730.1| - 2.5e-06 27.1 0.0 5.8e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|352683206|ref|YP_004893730.1| - 0.03 13.2 0.0 0.05 12.5 0.0 1.4 1 1 0 1 1 1 0 Putative sugar-binding domain CoA_trans PF01144.18 gi|352683206|ref|YP_004893730.1| - 0.07 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Coenzyme A transferase Radical_SAM PF04055.16 gi|352683207|ref|YP_004893731.1| - 1.8e-19 70.5 0.0 3e-19 69.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily HHH_5 PF14520.1 gi|352683207|ref|YP_004893731.1| - 0.073 13.2 0.1 0.2 11.8 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain AIRS PF00586.19 gi|352683209|ref|YP_004893733.1| - 9e-08 32.2 0.0 2.1e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF92 PF01940.11 gi|352683211|ref|YP_004893735.1| - 9.3e-51 172.1 13.2 1.2e-50 171.8 9.1 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 CTP_transf_1 PF01148.15 gi|352683211|ref|YP_004893735.1| - 3.8 7.0 17.1 11 5.6 11.9 1.7 1 1 0 1 1 1 0 Cytidylyltransferase family UPF0542 PF15086.1 gi|352683211|ref|YP_004893735.1| - 4.8 6.9 5.8 1.2 8.8 0.0 2.5 3 0 0 3 3 3 0 Uncharacterised protein family UPF0542 Asparaginase PF00710.15 gi|352683213|ref|YP_004893737.1| - 2.8e-85 285.9 0.0 3.7e-85 285.5 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|352683213|ref|YP_004893737.1| - 0.046 13.0 0.0 0.088 12.1 0.0 1.4 1 1 0 1 1 1 0 Periplasmic binding protein domain HD_3 PF13023.1 gi|352683214|ref|YP_004893738.1| - 4.4e-10 39.5 0.0 5.1e-09 36.0 0.0 2.0 2 0 0 2 2 2 1 HD domain HD PF01966.17 gi|352683214|ref|YP_004893738.1| - 1.8e-05 24.7 0.3 5.1e-05 23.2 0.2 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|352683214|ref|YP_004893738.1| - 0.0013 18.0 0.1 0.0019 17.4 0.0 1.2 1 0 0 1 1 1 1 HDOD domain zf-ZPR1 PF03367.8 gi|352683215|ref|YP_004893739.1| - 1.9e-27 95.3 0.0 2.3e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain zf-ribbon_3 PF13248.1 gi|352683215|ref|YP_004893739.1| - 0.0076 15.4 1.5 0.45 9.7 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DUF3107 PF11305.3 gi|352683215|ref|YP_004893739.1| - 0.015 15.1 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3107) zf-NADH-PPase PF09297.6 gi|352683215|ref|YP_004893739.1| - 0.024 14.1 2.7 1.3 8.6 0.1 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|352683215|ref|YP_004893739.1| - 0.054 13.2 2.6 0.24 11.1 1.8 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|352683215|ref|YP_004893739.1| - 0.056 13.7 0.2 0.095 13.0 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF1599 PF07659.6 gi|352683215|ref|YP_004893739.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1599) Zn-ribbon_8 PF09723.5 gi|352683215|ref|YP_004893739.1| - 0.14 12.1 0.4 5.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|352683215|ref|YP_004893739.1| - 0.15 12.0 1.8 4.8 7.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CpXC PF14353.1 gi|352683215|ref|YP_004893739.1| - 0.15 11.9 1.3 0.68 9.9 0.2 2.2 1 1 1 2 2 2 0 CpXC protein DUF2072 PF09845.4 gi|352683215|ref|YP_004893739.1| - 0.19 11.6 0.4 1.4 8.8 0.0 2.3 3 0 0 3 3 3 0 Zn-ribbon containing protein (DUF2072) TF_Zn_Ribbon PF08271.7 gi|352683215|ref|YP_004893739.1| - 0.23 10.8 1.4 23 4.4 0.0 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|352683215|ref|YP_004893739.1| - 0.77 9.4 2.6 15 5.3 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|352683215|ref|YP_004893739.1| - 2.2 7.8 4.1 5.9 6.4 0.3 2.5 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Bax1-I PF01027.15 gi|352683216|ref|YP_004893740.1| - 0.00036 20.2 6.7 0.00041 20.0 4.6 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 7TMR-DISM_7TM PF07695.6 gi|352683216|ref|YP_004893740.1| - 0.08 12.6 11.0 0.11 12.1 7.6 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Flp_Fap PF04964.9 gi|352683216|ref|YP_004893740.1| - 0.28 10.7 0.2 0.28 10.7 0.1 2.7 3 0 0 3 3 3 0 Flp/Fap pilin component DUF3816 PF12822.2 gi|352683216|ref|YP_004893740.1| - 0.31 10.9 5.8 0.41 10.5 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) YfhO PF09586.5 gi|352683216|ref|YP_004893740.1| - 0.38 8.7 5.4 0.46 8.4 3.8 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO PAP2_C PF14360.1 gi|352683216|ref|YP_004893740.1| - 0.45 10.8 4.2 0.55 10.5 1.8 1.8 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Na_Ca_ex PF01699.19 gi|352683216|ref|YP_004893740.1| - 0.47 10.0 10.2 0.6 9.7 7.1 1.1 1 0 0 1 1 1 0 Sodium/calcium exchanger protein DUF2665 PF11654.3 gi|352683216|ref|YP_004893740.1| - 0.63 9.6 2.3 3.2 7.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2665) Hum_adeno_E3A PF05393.6 gi|352683216|ref|YP_004893740.1| - 1.2 8.8 4.2 1 9.0 2.0 1.5 1 1 0 1 1 1 0 Human adenovirus early E3A glycoprotein Abi PF02517.11 gi|352683216|ref|YP_004893740.1| - 1.4 9.0 6.2 2.2 8.4 4.2 1.5 1 1 0 1 1 1 0 CAAX protease self-immunity DUF2628 PF10947.3 gi|352683216|ref|YP_004893740.1| - 3.7 7.3 9.3 5.4 6.8 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) AA_kinase PF00696.23 gi|352683217|ref|YP_004893741.1| - 1.9e-32 112.7 0.1 2.2e-32 112.5 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.12 gi|352683218|ref|YP_004893742.1| - 1.7e-50 171.2 0.0 2.2e-50 170.9 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase Annexin PF00191.15 gi|352683218|ref|YP_004893742.1| - 0.037 13.9 0.6 13 5.8 0.0 3.3 3 0 0 3 3 3 0 Annexin MttA_Hcf106 PF02416.11 gi|352683219|ref|YP_004893743.1| - 4.5e-17 60.8 1.7 9.8e-15 53.4 0.1 2.4 1 1 1 2 2 2 2 mttA/Hcf106 family Hom_end PF05204.9 gi|352683219|ref|YP_004893743.1| - 0.0053 16.6 0.2 0.0063 16.4 0.1 1.2 1 0 0 1 1 1 1 Homing endonuclease Rho_N PF07498.7 gi|352683219|ref|YP_004893743.1| - 0.024 14.3 1.0 0.055 13.2 0.8 1.5 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain Prismane PF03063.15 gi|352683219|ref|YP_004893743.1| - 0.035 12.4 0.1 0.035 12.4 0.0 1.0 1 0 0 1 1 1 0 Prismane/CO dehydrogenase family OapA_N PF08525.6 gi|352683219|ref|YP_004893743.1| - 0.062 13.0 0.8 0.1 12.4 0.5 1.4 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif NTP_transf_3 PF12804.2 gi|352683220|ref|YP_004893744.1| - 4.6e-25 88.5 0.0 6.2e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain LysE PF01810.13 gi|352683221|ref|YP_004893745.1| - 5.8e-25 87.6 17.2 6.7e-25 87.4 11.9 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|352683221|ref|YP_004893745.1| - 0.029 13.8 0.7 0.029 13.8 0.5 2.2 2 0 0 2 2 2 0 Integral membrane protein TerC family DUF3099 PF11298.3 gi|352683221|ref|YP_004893745.1| - 0.039 13.7 0.5 0.13 12.0 0.4 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) Metallophos_2 PF12850.2 gi|352683222|ref|YP_004893746.1| - 9.6e-25 87.2 0.0 1.2e-24 86.9 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|352683222|ref|YP_004893746.1| - 4.3e-05 22.9 0.2 0.003 16.9 0.2 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|352683222|ref|YP_004893746.1| - 0.022 13.8 0.0 0.2 10.7 0.0 1.9 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily tRNA-synt_2 PF00152.15 gi|352683223|ref|YP_004893747.1| - 7.8e-89 297.7 0.0 1.9e-88 296.5 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|352683223|ref|YP_004893747.1| - 3.8e-09 36.2 0.0 8.7e-09 35.1 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|352683223|ref|YP_004893747.1| - 7.3e-06 25.3 0.0 0.045 12.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) RPA_interact_M PF14767.1 gi|352683223|ref|YP_004893747.1| - 0.037 14.7 0.8 0.63 10.8 0.1 2.8 3 0 0 3 3 3 0 Replication protein A interacting middle Glyco_tranf_2_3 PF13641.1 gi|352683224|ref|YP_004893748.1| - 1.3e-23 83.9 0.0 2e-23 83.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|352683224|ref|YP_004893748.1| - 1.5e-13 50.8 3.8 1.5e-13 50.8 2.6 2.5 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|352683224|ref|YP_004893748.1| - 5.5e-10 39.1 0.0 7.5e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|352683224|ref|YP_004893748.1| - 8.7e-10 38.1 0.0 1.8e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|352683224|ref|YP_004893748.1| - 0.012 14.7 0.0 0.019 14.0 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase like family 2 PGM_PMM_I PF02878.11 gi|352683225|ref|YP_004893749.1| - 2.9e-28 98.0 0.0 4.6e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|352683225|ref|YP_004893749.1| - 9.1e-20 70.9 0.0 2.2e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|352683225|ref|YP_004893749.1| - 1e-18 67.3 0.0 1.6e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|352683225|ref|YP_004893749.1| - 6.8e-10 38.8 0.1 1.8e-09 37.4 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF763 PF05559.6 gi|352683226|ref|YP_004893750.1| - 1.2e-122 408.8 0.0 1.4e-122 408.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Acetyltransf_1 PF00583.19 gi|352683227|ref|YP_004893751.1| - 2.3e-14 53.1 0.2 3.2e-14 52.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|352683227|ref|YP_004893751.1| - 5.5e-08 32.7 0.2 9.4e-08 31.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|352683227|ref|YP_004893751.1| - 1e-07 31.9 0.1 1.6e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|352683227|ref|YP_004893751.1| - 1.2e-07 31.4 0.1 1.9e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|352683227|ref|YP_004893751.1| - 1.4e-07 31.6 0.0 1.9e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|352683227|ref|YP_004893751.1| - 3.4e-07 30.2 0.1 4.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|352683227|ref|YP_004893751.1| - 4.5e-07 29.9 0.0 6.4e-07 29.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|352683227|ref|YP_004893751.1| - 5.1e-05 23.4 0.2 0.00022 21.3 0.2 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PhosphMutase PF10143.4 gi|352683228|ref|YP_004893752.1| - 7.2e-60 201.5 0.1 2.2e-59 199.9 0.0 1.8 3 0 0 3 3 3 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|352683228|ref|YP_004893752.1| - 4.5e-45 153.9 0.0 5.6e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|352683228|ref|YP_004893752.1| - 0.0002 20.2 0.2 0.0028 16.4 0.2 1.9 1 1 1 2 2 2 2 Alkaline phosphatase Phosphodiest PF01663.17 gi|352683228|ref|YP_004893752.1| - 0.0043 16.4 0.4 0.015 14.6 0.2 1.8 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase CutA1 PF03091.10 gi|352683229|ref|YP_004893753.1| - 2.2e-38 129.9 0.6 2.5e-38 129.8 0.4 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Acetyltransf_1 PF00583.19 gi|352683229|ref|YP_004893753.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family AMP-binding_C PF13193.1 gi|352683229|ref|YP_004893753.1| - 0.17 12.8 1.5 1.9 9.4 1.0 2.1 1 1 0 1 1 1 0 AMP-binding enzyme C-terminal domain DUF2250 PF10007.4 gi|352683230|ref|YP_004893754.1| - 1.5e-30 104.9 4.1 1.6e-30 104.8 2.2 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|352683230|ref|YP_004893754.1| - 5.2e-05 22.8 0.0 7.5e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|352683230|ref|YP_004893754.1| - 0.00058 19.4 0.3 0.0074 15.9 0.0 2.4 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|352683230|ref|YP_004893754.1| - 0.00061 19.4 0.9 0.0032 17.1 0.1 2.4 1 1 2 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|352683230|ref|YP_004893754.1| - 0.00099 19.3 0.0 0.0027 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|352683230|ref|YP_004893754.1| - 0.019 14.6 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|352683230|ref|YP_004893754.1| - 0.027 14.6 0.4 2.6 8.2 0.0 2.2 1 1 1 2 2 2 0 Winged helix-turn helix GntR PF00392.16 gi|352683230|ref|YP_004893754.1| - 0.031 13.7 0.1 0.063 12.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|352683230|ref|YP_004893754.1| - 0.11 12.3 1.4 0.35 10.6 0.1 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain FUR PF01475.14 gi|352683230|ref|YP_004893754.1| - 0.11 12.4 0.1 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DUF1634 PF07843.6 gi|352683231|ref|YP_004893755.1| - 5.2e-31 106.4 9.1 6e-31 106.1 6.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) TctB PF07331.6 gi|352683231|ref|YP_004893755.1| - 0.031 13.9 7.7 0.037 13.6 5.3 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Grp1_Fun34_YaaH PF01184.14 gi|352683231|ref|YP_004893755.1| - 1.3 8.2 7.8 0.19 11.0 1.8 1.8 2 0 0 2 2 2 0 GPR1/FUN34/yaaH family TauE PF01925.14 gi|352683232|ref|YP_004893756.1| - 2.7e-38 131.7 29.0 3.5e-38 131.4 20.1 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MFS_1 PF07690.11 gi|352683232|ref|YP_004893756.1| - 1.4 7.5 35.0 11 4.6 24.3 2.1 1 1 0 1 1 1 0 Major Facilitator Superfamily HD PF01966.17 gi|352683233|ref|YP_004893757.1| - 0.00024 21.1 0.2 0.00048 20.1 0.1 1.6 1 0 0 1 1 1 1 HD domain Alpha-amyl_C2 PF07821.7 gi|352683233|ref|YP_004893757.1| - 0.092 12.6 0.3 0.57 10.0 0.0 2.3 2 0 0 2 2 2 0 Alpha-amylase C-terminal beta-sheet domain OCD_Mu_crystall PF02423.10 gi|352683237|ref|YP_004893761.1| - 4.9e-35 120.7 0.5 6e-35 120.5 0.4 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|352683237|ref|YP_004893761.1| - 7.1e-07 29.3 0.2 1.1e-06 28.8 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|352683237|ref|YP_004893761.1| - 0.0003 21.1 1.8 0.00039 20.8 0.3 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.14 gi|352683237|ref|YP_004893761.1| - 0.048 12.7 0.1 0.085 11.9 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Radical_SAM PF04055.16 gi|352683238|ref|YP_004893762.1| - 2e-16 60.5 0.0 1.6e-15 57.6 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|352683238|ref|YP_004893762.1| - 0.12 12.2 0.0 0.33 10.8 0.0 1.8 1 1 0 1 1 1 0 B12 binding domain DUF650 PF04894.7 gi|352683239|ref|YP_004893763.1| - 1.6e-84 283.6 0.0 2.1e-84 283.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|352683239|ref|YP_004893763.1| - 4.2e-20 71.4 0.7 7.3e-20 70.6 0.5 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) CARDB PF07705.6 gi|352683240|ref|YP_004893764.1| - 7.8e-06 25.8 1.2 0.0001 22.3 0.2 3.2 4 0 0 4 4 4 1 CARDB Transglut_C PF00927.17 gi|352683240|ref|YP_004893764.1| - 0.00024 21.0 0.1 0.0015 18.5 0.1 2.2 2 0 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|352683240|ref|YP_004893764.1| - 0.001 19.0 4.1 0.016 15.2 0.1 4.1 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|352683240|ref|YP_004893764.1| - 0.013 15.5 2.6 0.013 15.5 1.8 3.5 4 0 0 4 4 4 0 Domain of unknown function DUF11 Trs65 PF12735.2 gi|352683240|ref|YP_004893764.1| - 0.028 13.7 0.1 0.11 11.7 0.0 2.1 2 0 0 2 2 2 0 TRAPP trafficking subunit Trs65 ABC_tran PF00005.22 gi|352683241|ref|YP_004893765.1| - 8.8e-31 107.0 0.0 1.1e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|352683241|ref|YP_004893765.1| - 1.2e-14 55.0 0.0 2.9e-08 34.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|352683241|ref|YP_004893765.1| - 1.2e-05 24.8 0.9 0.062 12.7 0.0 2.3 1 1 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|352683241|ref|YP_004893765.1| - 7.9e-05 21.9 0.0 0.27 10.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|352683241|ref|YP_004893765.1| - 0.00027 20.4 0.0 0.029 13.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|352683241|ref|YP_004893765.1| - 0.00062 19.9 1.1 0.22 11.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|352683241|ref|YP_004893765.1| - 0.00072 19.9 0.1 0.0011 19.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|352683241|ref|YP_004893765.1| - 0.0019 18.0 0.1 0.023 14.6 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|352683241|ref|YP_004893765.1| - 0.0075 15.7 0.1 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|352683241|ref|YP_004893765.1| - 0.012 15.6 2.3 0.046 13.7 1.6 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|352683241|ref|YP_004893765.1| - 0.023 14.9 0.3 0.12 12.7 0.2 1.9 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|352683241|ref|YP_004893765.1| - 0.036 13.8 1.6 0.068 12.9 0.2 2.0 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|352683241|ref|YP_004893765.1| - 0.039 13.6 0.2 0.081 12.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.4 gi|352683241|ref|YP_004893765.1| - 0.041 12.4 2.3 0.38 9.2 0.2 2.7 3 1 0 3 3 3 0 Predicted ATPase of the ABC class AAA_30 PF13604.1 gi|352683241|ref|YP_004893765.1| - 0.041 13.4 0.1 0.12 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|352683241|ref|YP_004893765.1| - 0.043 14.6 2.5 0.11 13.3 1.8 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|352683241|ref|YP_004893765.1| - 0.047 13.5 1.0 0.16 11.8 0.7 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|352683241|ref|YP_004893765.1| - 0.049 12.6 0.0 0.88 8.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|352683241|ref|YP_004893765.1| - 0.064 12.9 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|352683241|ref|YP_004893765.1| - 0.078 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|352683241|ref|YP_004893765.1| - 0.097 12.2 0.3 0.21 11.1 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|352683241|ref|YP_004893765.1| - 0.13 12.1 0.0 0.61 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain ThiF PF00899.16 gi|352683242|ref|YP_004893766.1| - 1.7e-41 141.2 0.0 2.3e-41 140.7 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|352683242|ref|YP_004893766.1| - 3.1e-17 61.9 0.3 5e-17 61.2 0.2 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|352683242|ref|YP_004893766.1| - 0.00017 21.7 0.0 0.00026 21.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|352683242|ref|YP_004893766.1| - 0.0032 17.3 0.6 0.039 13.8 0.4 2.1 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|352683242|ref|YP_004893766.1| - 0.042 13.5 0.1 0.068 12.8 0.1 1.5 1 1 0 1 1 1 0 KR domain ApbA PF02558.11 gi|352683242|ref|YP_004893766.1| - 0.061 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|352683242|ref|YP_004893766.1| - 0.11 11.6 0.2 0.49 9.5 0.1 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_36 PF13730.1 gi|352683243|ref|YP_004893767.1| - 8.7e-05 22.5 0.0 0.00025 21.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|352683243|ref|YP_004893767.1| - 0.0013 18.9 0.1 0.011 16.0 0.0 2.4 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|352683243|ref|YP_004893767.1| - 0.0048 16.5 0.1 0.022 14.3 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.6 gi|352683243|ref|YP_004893767.1| - 0.01 15.5 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Put_DNA-bind_N PF06971.8 gi|352683243|ref|YP_004893767.1| - 0.013 15.2 0.2 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus HTH_24 PF13412.1 gi|352683243|ref|YP_004893767.1| - 0.017 14.4 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|352683243|ref|YP_004893767.1| - 0.02 14.9 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TP_methylase PF00590.15 gi|352683243|ref|YP_004893767.1| - 0.02 14.5 0.0 0.033 13.8 0.0 1.5 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Rrf2 PF02082.15 gi|352683243|ref|YP_004893767.1| - 0.031 14.3 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MutS_II PF05188.12 gi|352683243|ref|YP_004893767.1| - 0.14 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 MutS domain II eIF-5a PF01287.15 gi|352683244|ref|YP_004893768.1| - 7.1e-15 54.7 0.7 1.2e-14 54.0 0.5 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|352683244|ref|YP_004893768.1| - 4.6e-07 29.5 0.1 1.1e-06 28.3 0.0 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|352683244|ref|YP_004893768.1| - 0.00034 20.2 0.8 0.0011 18.6 0.4 2.0 2 0 0 2 2 2 1 KOW motif EFP PF01132.15 gi|352683244|ref|YP_004893768.1| - 0.014 15.0 0.1 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Ribosomal_L3 PF00297.17 gi|352683244|ref|YP_004893768.1| - 0.049 13.0 0.1 0.054 12.8 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L3 Clr2 PF10383.4 gi|352683244|ref|YP_004893768.1| - 0.12 12.3 0.1 0.15 12.0 0.1 1.1 1 0 0 1 1 1 0 Transcription-silencing protein Clr2 DUF655 PF04919.7 gi|352683245|ref|YP_004893769.1| - 5.5e-55 185.8 0.2 6.4e-55 185.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|352683245|ref|YP_004893769.1| - 7.6e-06 25.8 0.1 6.4e-05 22.9 0.0 2.2 1 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|352683245|ref|YP_004893769.1| - 7.8e-05 22.5 0.1 0.0057 16.5 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|352683246|ref|YP_004893770.1| - 1.5e-13 50.8 3.1 1.9e-13 50.4 2.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 MerR_1 PF13411.1 gi|352683246|ref|YP_004893770.1| - 0.0071 16.0 0.3 0.18 11.6 0.1 2.4 2 0 0 2 2 2 1 MerR HTH family regulatory protein DUF3770 PF12603.3 gi|352683246|ref|YP_004893770.1| - 0.023 13.8 0.8 0.053 12.6 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3770) DUF2089 PF09862.4 gi|352683246|ref|YP_004893770.1| - 0.026 14.2 0.4 0.054 13.2 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) Pox_I6 PF04595.8 gi|352683246|ref|YP_004893770.1| - 0.04 12.6 0.1 0.047 12.4 0.0 1.1 1 0 0 1 1 1 0 Poxvirus I6-like family V-ATPase_H_N PF03224.9 gi|352683246|ref|YP_004893770.1| - 0.047 12.7 1.2 0.079 12.0 0.3 1.6 1 1 0 1 1 1 0 V-ATPase subunit H Ribosomal_L21e PF01157.13 gi|352683247|ref|YP_004893771.1| - 3.5e-20 71.6 0.2 3.9e-20 71.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e ATP_bind_1 PF03029.12 gi|352683248|ref|YP_004893772.1| - 3e-57 193.8 0.0 3.4e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|352683248|ref|YP_004893772.1| - 3.1e-09 36.5 0.0 2.5e-08 33.5 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain CbiA PF01656.18 gi|352683248|ref|YP_004893772.1| - 1.8e-08 34.0 0.0 2.1e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|352683248|ref|YP_004893772.1| - 1.8e-08 33.5 0.0 4.6e-06 25.6 0.0 2.5 2 1 0 2 2 2 1 ArgK protein MobB PF03205.9 gi|352683248|ref|YP_004893772.1| - 2.1e-06 27.4 0.0 1.5e-05 24.7 0.0 2.2 2 1 1 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|352683248|ref|YP_004893772.1| - 6.1e-06 25.8 0.0 8.4e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain MMR_HSR1 PF01926.18 gi|352683248|ref|YP_004893772.1| - 1.4e-05 25.0 0.0 2.9e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|352683248|ref|YP_004893772.1| - 0.00017 22.3 0.0 0.0004 21.2 0.0 1.7 1 1 1 2 2 1 1 AAA domain cobW PF02492.14 gi|352683248|ref|YP_004893772.1| - 0.00018 21.0 0.0 0.022 14.2 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ArsA_ATPase PF02374.10 gi|352683248|ref|YP_004893772.1| - 0.00046 19.3 0.0 0.00093 18.3 0.0 1.4 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_30 PF13604.1 gi|352683248|ref|YP_004893772.1| - 0.00049 19.7 0.1 0.0032 17.0 0.0 2.4 1 1 1 2 2 2 1 AAA domain SRP54 PF00448.17 gi|352683248|ref|YP_004893772.1| - 0.0006 19.3 0.0 0.0054 16.1 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|352683248|ref|YP_004893772.1| - 0.0018 18.2 0.0 0.0057 16.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|352683248|ref|YP_004893772.1| - 0.0023 17.4 0.0 0.0044 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|352683248|ref|YP_004893772.1| - 0.0051 17.1 0.0 0.0081 16.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.1 gi|352683248|ref|YP_004893772.1| - 0.0071 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|352683248|ref|YP_004893772.1| - 0.0084 15.6 0.0 1.6 8.2 0.0 3.6 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|352683248|ref|YP_004893772.1| - 0.0085 16.0 0.0 0.033 14.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|352683248|ref|YP_004893772.1| - 0.0087 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|352683248|ref|YP_004893772.1| - 0.0095 16.0 0.0 0.015 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|352683248|ref|YP_004893772.1| - 0.0096 14.5 0.0 0.015 13.9 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain APS_kinase PF01583.15 gi|352683248|ref|YP_004893772.1| - 0.014 15.0 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase NTPase_1 PF03266.10 gi|352683248|ref|YP_004893772.1| - 0.019 14.6 0.0 0.5 10.0 0.0 2.3 2 1 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|352683248|ref|YP_004893772.1| - 0.025 13.7 0.0 0.085 12.0 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|352683248|ref|YP_004893772.1| - 0.028 13.3 0.0 0.042 12.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|352683248|ref|YP_004893772.1| - 0.03 13.5 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF815 PF05673.8 gi|352683248|ref|YP_004893772.1| - 0.031 13.2 0.0 0.045 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Thymidylate_kin PF02223.12 gi|352683248|ref|YP_004893772.1| - 0.036 13.4 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase NB-ARC PF00931.17 gi|352683248|ref|YP_004893772.1| - 0.038 12.8 0.0 0.057 12.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|352683248|ref|YP_004893772.1| - 0.044 14.0 0.0 0.064 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.9 gi|352683248|ref|YP_004893772.1| - 0.051 12.5 0.1 0.58 9.0 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase DUF3948 PF13134.1 gi|352683248|ref|YP_004893772.1| - 0.074 12.5 0.9 0.14 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3948) Gtr1_RagA PF04670.7 gi|352683248|ref|YP_004893772.1| - 0.1 11.6 0.0 0.93 8.5 0.0 2.0 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|352683248|ref|YP_004893772.1| - 0.11 12.2 0.1 5.8 6.7 0.1 2.2 2 0 0 2 2 2 0 Dynamin family MipZ PF09140.6 gi|352683248|ref|YP_004893772.1| - 0.13 11.3 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ NACHT PF05729.7 gi|352683248|ref|YP_004893772.1| - 0.14 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|352683248|ref|YP_004893772.1| - 0.16 12.4 0.1 0.34 11.4 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein Methyltransf_32 PF13679.1 gi|352683248|ref|YP_004893772.1| - 0.17 11.5 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain SRP19 PF01922.12 gi|352683249|ref|YP_004893773.1| - 1.4e-18 67.2 0.1 1.8e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 SRP19 protein DUF2194 PF09960.4 gi|352683249|ref|YP_004893773.1| - 0.0041 15.2 0.0 0.0044 15.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2194) LAGLIDADG_3 PF14528.1 gi|352683249|ref|YP_004893773.1| - 0.11 12.7 0.0 0.14 12.3 0.0 1.3 1 1 0 1 1 1 0 LAGLIDADG-like domain Ribosomal_S8e PF01201.17 gi|352683250|ref|YP_004893774.1| - 4.8e-28 97.9 1.6 5.7e-28 97.6 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e TF_Zn_Ribbon PF08271.7 gi|352683251|ref|YP_004893775.1| - 3.6e-13 48.5 1.4 5.7e-13 47.9 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.14 gi|352683251|ref|YP_004893775.1| - 3.4e-10 39.5 1.6 1.1e-06 28.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat RRN7 PF11781.3 gi|352683251|ref|YP_004893775.1| - 0.0013 18.1 0.2 0.0026 17.2 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|352683251|ref|YP_004893775.1| - 0.0031 17.7 0.2 0.0062 16.8 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|352683251|ref|YP_004893775.1| - 0.004 17.1 0.0 0.0059 16.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase OrfB_Zn_ribbon PF07282.6 gi|352683251|ref|YP_004893775.1| - 0.0059 16.2 0.5 0.014 15.0 0.2 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|352683251|ref|YP_004893775.1| - 0.023 13.9 2.5 0.061 12.5 1.8 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Elf1 PF05129.8 gi|352683251|ref|YP_004893775.1| - 0.038 13.6 0.3 0.086 12.5 0.2 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|352683251|ref|YP_004893775.1| - 0.04 13.7 0.1 0.077 12.8 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Sel1 PF08238.7 gi|352683251|ref|YP_004893775.1| - 0.051 14.2 0.9 0.88 10.3 0.0 2.7 2 0 0 2 2 2 0 Sel1 repeat zinc_ribbon_2 PF13240.1 gi|352683251|ref|YP_004893775.1| - 0.074 12.5 0.2 6.5 6.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|352683251|ref|YP_004893775.1| - 0.14 11.8 1.7 0.33 10.6 1.2 1.7 1 0 0 1 1 1 0 Nudix N-terminal Trm112p PF03966.11 gi|352683251|ref|YP_004893775.1| - 0.17 12.2 0.8 9.6 6.6 0.6 2.6 1 1 0 1 1 1 0 Trm112p-like protein Prok-RING_1 PF14446.1 gi|352683251|ref|YP_004893775.1| - 0.6 9.8 3.8 1.4 8.6 2.7 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Gar1 PF04410.9 gi|352683252|ref|YP_004893776.1| - 0.0028 17.1 0.0 0.0029 17.0 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region MarR PF01047.17 gi|352683253|ref|YP_004893777.1| - 8.1e-05 22.2 0.1 0.00022 20.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|352683253|ref|YP_004893777.1| - 0.001 19.3 0.1 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|352683253|ref|YP_004893777.1| - 0.0035 17.1 0.1 0.0057 16.4 0.0 1.4 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC Sulfolobus_pRN PF05584.6 gi|352683253|ref|YP_004893777.1| - 0.0069 16.3 0.5 0.012 15.5 0.3 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein DUF2250 PF10007.4 gi|352683253|ref|YP_004893777.1| - 0.0094 15.8 0.1 0.016 15.0 0.1 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|352683253|ref|YP_004893777.1| - 0.016 14.9 0.2 0.034 13.9 0.1 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|352683253|ref|YP_004893777.1| - 0.044 13.5 0.3 0.077 12.8 0.2 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|352683253|ref|YP_004893777.1| - 0.07 12.8 0.1 0.35 10.5 0.0 2.0 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|352683253|ref|YP_004893777.1| - 0.081 12.6 0.4 0.25 11.0 0.2 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB LigT_PEase PF02834.11 gi|352683254|ref|YP_004893778.1| - 3.4e-27 94.2 0.9 1.5e-16 60.1 0.1 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|352683254|ref|YP_004893778.1| - 8.4e-17 61.2 0.0 1.1e-16 60.8 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|352683254|ref|YP_004893778.1| - 2.3e-12 47.0 0.0 3.6e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|352683254|ref|YP_004893778.1| - 5.3e-06 25.6 0.0 6.4e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised conserved protein CPDase PF07823.6 gi|352683254|ref|YP_004893778.1| - 0.15 11.4 0.0 0.35 10.3 0.0 1.6 2 0 0 2 2 2 0 Cyclic phosphodiesterase-like protein tRNA_NucTransf2 PF09249.6 gi|352683255|ref|YP_004893779.1| - 5.6e-44 148.6 0.0 8.7e-44 148.0 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|352683255|ref|YP_004893779.1| - 1.4e-11 44.5 0.0 3.5e-11 43.2 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Acetyltransf_10 PF13673.1 gi|352683255|ref|YP_004893779.1| - 0.081 13.0 0.0 0.21 11.6 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DivIC PF04977.10 gi|352683256|ref|YP_004893780.1| - 0.088 12.3 0.3 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 Septum formation initiator DUF89 PF01937.14 gi|352683257|ref|YP_004893781.1| - 1.3e-14 53.7 0.1 7.5e-12 44.7 0.0 2.4 2 1 0 2 2 2 2 Protein of unknown function DUF89 RAP1 PF07218.6 gi|352683257|ref|YP_004893781.1| - 0.018 13.1 0.0 0.022 12.8 0.0 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Aminotran_5 PF00266.14 gi|352683258|ref|YP_004893782.1| - 1.2e-23 83.5 0.0 1.5e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|352683258|ref|YP_004893782.1| - 8.3e-07 27.6 0.0 1.2e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|352683258|ref|YP_004893782.1| - 0.0012 17.8 0.0 0.02 13.8 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II SHMT PF00464.14 gi|352683258|ref|YP_004893782.1| - 0.025 12.9 0.0 0.034 12.5 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase 2-Hacid_dh_C PF02826.14 gi|352683259|ref|YP_004893783.1| - 1.4e-51 174.1 0.0 2.1e-51 173.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|352683259|ref|YP_004893783.1| - 3.5e-31 107.4 0.0 4.3e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.16 gi|352683259|ref|YP_004893783.1| - 4.6e-05 23.3 0.0 9e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|352683259|ref|YP_004893783.1| - 0.00013 21.8 0.1 0.00041 20.2 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|352683259|ref|YP_004893783.1| - 0.0035 17.7 0.1 0.011 16.1 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|352683259|ref|YP_004893783.1| - 0.0069 16.0 0.1 0.019 14.6 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PIN PF01850.16 gi|352683259|ref|YP_004893783.1| - 0.026 14.8 0.4 0.4 11.0 0.0 2.4 2 0 0 2 2 2 0 PIN domain IlvN PF07991.7 gi|352683259|ref|YP_004893783.1| - 0.03 13.6 0.0 0.058 12.7 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Gp_dh_N PF00044.19 gi|352683259|ref|YP_004893783.1| - 0.12 12.3 0.5 0.19 11.6 0.4 1.5 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CBS PF00571.23 gi|352683260|ref|YP_004893784.1| - 3.3e-33 113.2 2.6 1.5e-18 66.2 0.3 3.4 3 0 0 3 3 3 2 CBS domain HrcA_DNA-bdg PF03444.10 gi|352683260|ref|YP_004893784.1| - 2.5e-31 106.9 0.2 5.2e-31 105.9 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|352683260|ref|YP_004893784.1| - 5.2e-12 45.7 0.0 1.6e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|352683260|ref|YP_004893784.1| - 8.1e-06 25.3 0.4 2.4e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|352683260|ref|YP_004893784.1| - 0.00068 19.2 1.0 0.0087 15.7 0.4 2.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.6 gi|352683260|ref|YP_004893784.1| - 0.0039 17.2 0.0 0.0088 16.0 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal Fe_dep_repress PF01325.14 gi|352683260|ref|YP_004893784.1| - 0.0073 16.2 0.4 0.018 14.9 0.2 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|352683260|ref|YP_004893784.1| - 0.0098 15.5 0.0 0.029 14.0 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|352683260|ref|YP_004893784.1| - 0.042 13.4 0.0 7.8 6.1 0.0 2.8 2 1 1 3 3 3 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|352683260|ref|YP_004893784.1| - 0.068 12.8 0.1 0.32 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF3659 PF12396.3 gi|352683260|ref|YP_004893784.1| - 2.5 7.8 5.3 22 4.7 0.2 3.4 2 1 0 3 3 3 0 Protein of unknown function (DUF3659) PfkB PF00294.19 gi|352683261|ref|YP_004893785.1| - 9.3e-12 44.6 0.0 4.3e-08 32.6 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Cys_Met_Meta_PP PF01053.15 gi|352683262|ref|YP_004893786.1| - 3.9e-119 397.4 0.0 4.4e-119 397.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|352683262|ref|YP_004893786.1| - 5.4e-05 22.0 0.0 7e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|352683262|ref|YP_004893786.1| - 0.0021 16.4 0.0 0.0033 15.7 0.0 1.3 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_1_2 PF00155.16 gi|352683262|ref|YP_004893786.1| - 0.0065 15.4 0.0 0.015 14.3 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|352683262|ref|YP_004893786.1| - 0.017 14.1 0.1 0.041 12.9 0.1 1.6 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Ribosomal_S4e PF00900.15 gi|352683264|ref|YP_004893788.1| - 4e-24 84.0 0.0 6.3e-24 83.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|352683264|ref|YP_004893788.1| - 7.1e-11 41.7 5.8 7.1e-11 41.7 4.0 2.0 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.20 gi|352683264|ref|YP_004893788.1| - 3.6e-10 39.1 0.1 9e-10 37.8 0.1 1.7 1 0 0 1 1 1 1 S4 domain CD20 PF04103.10 gi|352683265|ref|YP_004893789.1| - 0.26 11.1 2.9 0.49 10.3 2.0 1.6 1 1 0 1 1 1 0 CD20-like family PMP1_2 PF08114.6 gi|352683265|ref|YP_004893789.1| - 0.38 10.2 0.1 0.38 10.2 0.1 2.1 2 0 0 2 2 2 0 ATPase proteolipid family PLDc_2 PF13091.1 gi|352683266|ref|YP_004893790.1| - 4.5e-13 49.0 0.3 1.7e-11 43.9 0.2 2.1 1 1 0 1 1 1 1 PLD-like domain Fez1 PF06818.10 gi|352683266|ref|YP_004893790.1| - 0.0034 17.4 1.9 1 9.3 0.2 2.1 2 0 0 2 2 2 2 Fez1 DUF1049 PF06305.6 gi|352683266|ref|YP_004893790.1| - 0.0044 16.4 1.7 0.028 13.9 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1049) DUF3397 PF11877.3 gi|352683266|ref|YP_004893790.1| - 0.0074 16.2 2.2 0.013 15.5 1.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3397) CoA_binding_3 PF13727.1 gi|352683266|ref|YP_004893790.1| - 0.028 14.2 1.1 0.045 13.5 0.8 1.4 1 0 0 1 1 1 0 CoA-binding domain DUF2207 PF09972.4 gi|352683266|ref|YP_004893790.1| - 0.033 12.7 0.1 0.042 12.4 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4131 PF13567.1 gi|352683266|ref|YP_004893790.1| - 0.053 12.9 0.1 0.075 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PLDc PF00614.17 gi|352683266|ref|YP_004893790.1| - 0.054 13.3 0.4 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 Phospholipase D Active site motif Rabaptin PF03528.10 gi|352683266|ref|YP_004893790.1| - 0.35 10.8 2.7 3.9 7.4 0.2 2.2 2 0 0 2 2 2 0 Rabaptin DUF2968 PF11180.3 gi|352683266|ref|YP_004893790.1| - 6.2 6.1 6.5 4 6.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF2201_N PF13203.1 gi|352683267|ref|YP_004893791.1| - 5.5e-17 61.8 3.5 8e-10 38.3 0.1 2.1 1 1 1 2 2 2 2 Putative metallopeptidase domain DUF2201 PF09967.4 gi|352683267|ref|YP_004893791.1| - 1.7e-13 50.6 0.0 1.1e-12 48.1 0.0 2.0 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA PF00092.23 gi|352683267|ref|YP_004893791.1| - 1.3e-06 28.2 0.0 2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|352683267|ref|YP_004893791.1| - 2e-05 23.8 0.1 6.3e-05 22.2 0.1 1.8 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein HGD-D PF06050.8 gi|352683267|ref|YP_004893791.1| - 0.06 12.1 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component AAA_16 PF13191.1 gi|352683269|ref|YP_004893793.1| - 0.00025 21.1 0.0 0.0012 18.9 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|352683269|ref|YP_004893793.1| - 0.015 15.0 0.0 0.056 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|352683269|ref|YP_004893793.1| - 0.017 15.3 0.0 0.076 13.2 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|352683269|ref|YP_004893793.1| - 0.017 15.2 0.0 0.15 12.2 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|352683269|ref|YP_004893793.1| - 0.023 14.5 0.0 0.28 11.0 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|352683269|ref|YP_004893793.1| - 0.042 13.5 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain RuvB_N PF05496.7 gi|352683269|ref|YP_004893793.1| - 0.055 12.5 0.0 0.33 9.9 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus KaiC PF06745.8 gi|352683269|ref|YP_004893793.1| - 0.081 12.0 0.0 0.17 10.9 0.0 1.5 2 0 0 2 2 2 0 KaiC Abi PF02517.11 gi|352683272|ref|YP_004893796.1| - 1.4e-10 41.1 12.6 9.9e-10 38.4 8.7 2.1 1 1 0 1 1 1 1 CAAX protease self-immunity DUF2678 PF10856.3 gi|352683272|ref|YP_004893796.1| - 0.31 10.7 3.6 0.57 9.9 0.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) Nuc_deoxyrib_tr PF05014.10 gi|352683273|ref|YP_004893797.1| - 0.00015 21.5 0.0 0.00028 20.7 0.0 1.4 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Lysine_decarbox PF03641.9 gi|352683273|ref|YP_004893797.1| - 0.00022 21.0 0.1 0.0018 18.0 0.1 2.1 1 1 0 2 2 2 1 Possible lysine decarboxylase MoCF_biosynth PF00994.19 gi|352683274|ref|YP_004893798.1| - 2.7e-29 101.4 0.3 3.1e-29 101.2 0.2 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain PhoU PF01895.14 gi|352683275|ref|YP_004893799.1| - 6.2e-08 32.9 3.1 1.3e-07 31.9 0.1 2.4 2 1 0 2 2 2 1 PhoU domain DUF735 PF05246.6 gi|352683276|ref|YP_004893800.1| - 0.14 11.9 0.1 0.35 10.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF735) CBS PF00571.23 gi|352683277|ref|YP_004893801.1| - 3.9e-29 100.1 3.7 5.5e-15 54.8 0.2 2.1 2 0 0 2 2 2 2 CBS domain DUF2786 PF10979.3 gi|352683277|ref|YP_004893801.1| - 3.6e-06 26.5 0.3 0.013 15.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2786) Creatinase_N PF01321.13 gi|352683277|ref|YP_004893801.1| - 0.031 14.7 0.0 0.74 10.3 0.0 2.2 2 0 0 2 2 2 0 Creatinase/Prolidase N-terminal domain GAF_2 PF13185.1 gi|352683277|ref|YP_004893801.1| - 0.063 13.7 0.0 0.08 13.4 0.0 1.2 1 0 0 1 1 1 0 GAF domain OrfB_Zn_ribbon PF07282.6 gi|352683278|ref|YP_004893802.1| - 1.6e-10 40.5 0.1 3.4e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|352683278|ref|YP_004893802.1| - 0.00019 21.1 0.6 0.00033 20.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|352683278|ref|YP_004893802.1| - 0.00032 20.0 1.3 0.00055 19.3 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain OrfB_IS605 PF01385.14 gi|352683278|ref|YP_004893802.1| - 0.004 16.5 1.7 0.0083 15.5 1.2 1.5 1 1 0 1 1 1 1 Probable transposase zf-NADH-PPase PF09297.6 gi|352683278|ref|YP_004893802.1| - 0.0051 16.2 3.1 0.01 15.2 2.2 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DUF4391 PF14335.1 gi|352683278|ref|YP_004893802.1| - 0.011 15.1 0.7 0.019 14.3 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) Baculo_ME53 PF06061.6 gi|352683278|ref|YP_004893802.1| - 0.043 12.8 0.0 0.081 11.9 0.0 1.4 1 0 0 1 1 1 0 Baculoviridae ME53 zf-ribbon_3 PF13248.1 gi|352683278|ref|YP_004893802.1| - 0.043 13.0 5.1 0.81 8.9 3.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|352683278|ref|YP_004893802.1| - 0.045 13.4 0.6 0.045 13.4 0.4 1.8 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Cys_rich_CPCC PF14206.1 gi|352683278|ref|YP_004893802.1| - 0.047 13.2 0.3 0.085 12.4 0.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC Auto_anti-p27 PF06677.7 gi|352683278|ref|YP_004893802.1| - 0.062 13.0 1.8 0.11 12.2 1.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IncA PF04156.9 gi|352683278|ref|YP_004893802.1| - 0.08 12.5 1.0 0.21 11.1 0.6 1.7 2 0 0 2 2 2 0 IncA protein C1_1 PF00130.17 gi|352683278|ref|YP_004893802.1| - 0.11 12.1 0.8 0.2 11.4 0.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.1 gi|352683278|ref|YP_004893802.1| - 0.17 11.6 0.6 0.26 11.0 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|352683278|ref|YP_004893802.1| - 0.17 11.4 0.4 0.29 10.6 0.2 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|352683278|ref|YP_004893802.1| - 0.17 11.3 2.5 0.36 10.3 1.7 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|352683278|ref|YP_004893802.1| - 0.39 10.4 6.1 2.7 7.7 4.4 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|352683278|ref|YP_004893802.1| - 0.47 9.8 4.0 2 7.7 0.1 2.3 1 1 0 2 2 2 0 TFIIB zinc-binding Ogr_Delta PF04606.7 gi|352683278|ref|YP_004893802.1| - 1.4 8.6 3.8 0.99 9.1 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-IS66 PF13005.2 gi|352683278|ref|YP_004893802.1| - 2.3 8.2 5.6 0.85 9.6 0.4 2.8 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF3667 PF12412.3 gi|352683279|ref|YP_004893803.1| - 0.51 9.6 3.9 0.53 9.6 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3667) Arch_flagellin PF01917.11 gi|352683280|ref|YP_004893804.1| - 0.02 14.4 3.3 0.024 14.2 2.3 1.1 1 0 0 1 1 1 0 Archaebacterial flagellin MacB_PCD PF12704.2 gi|352683280|ref|YP_004893804.1| - 0.48 9.9 3.4 0.6 9.6 2.4 1.3 1 1 0 1 1 1 0 MacB-like periplasmic core domain CAP PF00188.21 gi|352683282|ref|YP_004893806.1| - 3.7e-06 27.4 0.3 1.9e-05 25.1 0.2 2.2 1 1 0 1 1 1 1 Cysteine-rich secretory protein family DUF2808 PF10989.3 gi|352683282|ref|YP_004893806.1| - 0.067 12.8 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2808) Fn3_assoc PF13287.1 gi|352683283|ref|YP_004893807.1| - 0.11 12.6 1.9 1.2 9.3 1.3 2.5 1 1 0 1 1 1 0 Fn3 associated BACON PF13004.2 gi|352683283|ref|YP_004893807.1| - 2.6 8.3 8.2 26 5.1 5.2 2.7 1 1 1 2 2 2 0 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal