# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- PAP2 PF01569.16 gi|119718919|ref|YP_919414.1| - 1.3e-19 70.1 2.4 1.3e-19 70.1 1.7 2.9 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|119718919|ref|YP_919414.1| - 0.85 9.1 7.5 0.1 12.1 0.5 2.4 2 1 0 2 2 2 0 PAP2 superfamily PAP2_C PF14360.1 gi|119718919|ref|YP_919414.1| - 1.4 9.2 4.1 0.82 9.9 0.5 2.3 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Peptidase_M42 PF05343.9 gi|119718920|ref|YP_919415.1| - 7.4e-98 326.9 0.0 8.6e-98 326.6 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|119718920|ref|YP_919415.1| - 3.5e-11 42.9 0.0 6e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|119718920|ref|YP_919415.1| - 2.9e-06 26.0 0.0 0.017 13.6 0.0 2.3 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Abhydrolase_5 PF12695.2 gi|119718921|ref|YP_919416.1| - 2.4e-24 85.7 0.0 3.4e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|119718921|ref|YP_919416.1| - 1.6e-22 80.5 0.0 4e-22 79.2 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|119718921|ref|YP_919416.1| - 2.9e-14 52.8 0.0 2e-13 50.0 0.0 2.0 1 1 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|119718921|ref|YP_919416.1| - 4.2e-13 49.3 0.0 8.4e-10 38.5 0.0 2.1 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.15 gi|119718921|ref|YP_919416.1| - 1.7e-11 44.1 0.0 5.7e-09 35.8 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.13 gi|119718921|ref|YP_919416.1| - 7e-09 35.2 0.0 4.6e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|119718921|ref|YP_919416.1| - 4e-07 29.8 0.0 1.3e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Putative lysophospholipase AXE1 PF05448.7 gi|119718921|ref|YP_919416.1| - 1.4e-05 23.7 0.1 3.8e-05 22.3 0.0 1.8 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) DUF2048 PF09752.4 gi|119718921|ref|YP_919416.1| - 3.2e-05 22.9 0.0 0.0021 16.9 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2048) DUF829 PF05705.9 gi|119718921|ref|YP_919416.1| - 5.4e-05 22.9 0.0 7.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) DUF676 PF05057.9 gi|119718921|ref|YP_919416.1| - 0.00018 20.8 0.0 0.00029 20.2 0.0 1.3 1 0 0 1 1 1 1 Putative serine esterase (DUF676) FSH1 PF03959.8 gi|119718921|ref|YP_919416.1| - 0.0012 18.3 0.0 0.005 16.3 0.0 1.9 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Abhydro_lipase PF04083.11 gi|119718921|ref|YP_919416.1| - 0.0033 16.7 0.0 0.0063 15.8 0.0 1.4 1 0 0 1 1 1 1 Partial alpha/beta-hydrolase lipase region BAAT_C PF08840.6 gi|119718921|ref|YP_919416.1| - 0.0069 16.1 0.0 0.015 15.0 0.0 1.7 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.15 gi|119718921|ref|YP_919416.1| - 0.0085 15.5 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Lipase_3 PF01764.20 gi|119718921|ref|YP_919416.1| - 0.061 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) PGAP1 PF07819.8 gi|119718921|ref|YP_919416.1| - 0.098 12.2 0.1 0.17 11.4 0.0 1.5 1 1 0 1 1 1 0 PGAP1-like protein Prok-E2_E PF14462.1 gi|119718921|ref|YP_919416.1| - 0.11 12.1 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic E2 family E Abhydrolase_3 PF07859.8 gi|119718921|ref|YP_919416.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold MFS_1 PF07690.11 gi|119718922|ref|YP_919417.1| - 1e-39 136.2 37.4 1e-39 136.2 25.9 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|119718922|ref|YP_919417.1| - 1.7e-09 36.8 27.7 4.6e-06 25.4 6.2 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter TRI12 PF06609.8 gi|119718922|ref|YP_919417.1| - 4.5e-05 21.8 2.3 4.5e-05 21.8 1.6 1.5 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) ATG22 PF11700.3 gi|119718922|ref|YP_919417.1| - 0.00075 18.0 33.1 0.027 12.9 11.5 2.7 1 1 1 2 2 2 2 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|119718922|ref|YP_919417.1| - 0.0095 15.7 0.1 0.0095 15.7 0.1 4.4 5 0 0 5 5 5 1 MFS_1 like family ABC_tran PF00005.22 gi|119718923|ref|YP_919418.1| - 8.3e-29 100.6 0.0 1.1e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119718923|ref|YP_919418.1| - 8.2e-12 45.6 0.1 1.2e-09 38.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|119718923|ref|YP_919418.1| - 0.0011 19.8 1.5 0.0071 17.1 0.5 2.6 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|119718923|ref|YP_919418.1| - 0.0038 16.6 0.1 2.3 7.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.1 gi|119718923|ref|YP_919418.1| - 0.0081 16.3 0.2 0.041 14.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119718923|ref|YP_919418.1| - 0.014 15.4 0.2 0.073 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|119718923|ref|YP_919418.1| - 0.023 14.5 0.0 0.047 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|119718923|ref|YP_919418.1| - 0.026 13.9 0.0 0.053 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119718923|ref|YP_919418.1| - 0.033 13.9 0.9 0.054 13.2 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|119718923|ref|YP_919418.1| - 0.035 13.1 0.0 0.37 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|119718923|ref|YP_919418.1| - 0.058 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|119718923|ref|YP_919418.1| - 0.06 12.5 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|119718923|ref|YP_919418.1| - 0.07 12.6 0.1 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|119718923|ref|YP_919418.1| - 0.11 12.7 0.0 0.53 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|119718923|ref|YP_919418.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|119718924|ref|YP_919419.1| - 1.8e-26 93.0 0.0 2.5e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119718924|ref|YP_919419.1| - 2.2e-09 37.6 0.0 0.00042 20.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119718924|ref|YP_919419.1| - 9.3e-08 31.5 0.0 1.5e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|119718924|ref|YP_919419.1| - 1.9e-05 24.9 0.5 0.038 14.3 0.2 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119718924|ref|YP_919419.1| - 0.00016 21.7 0.2 0.00058 19.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|119718924|ref|YP_919419.1| - 0.00021 21.4 0.3 0.0036 17.4 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|119718924|ref|YP_919419.1| - 0.00082 18.1 0.0 0.0015 17.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|119718924|ref|YP_919419.1| - 0.001 19.4 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|119718924|ref|YP_919419.1| - 0.0014 18.5 0.0 0.0074 16.1 0.0 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|119718924|ref|YP_919419.1| - 0.0016 17.6 0.1 0.0071 15.5 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|119718924|ref|YP_919419.1| - 0.0023 17.6 0.3 0.031 13.9 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.1 gi|119718924|ref|YP_919419.1| - 0.0026 18.5 0.6 0.0067 17.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|119718924|ref|YP_919419.1| - 0.003 17.7 0.1 0.023 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|119718924|ref|YP_919419.1| - 0.003 17.3 0.0 0.01 15.5 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase DUF258 PF03193.11 gi|119718924|ref|YP_919419.1| - 0.0066 15.6 0.0 0.0095 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|119718924|ref|YP_919419.1| - 0.0068 16.1 0.5 0.061 13.0 0.1 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_29 PF13555.1 gi|119718924|ref|YP_919419.1| - 0.0075 15.7 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|119718924|ref|YP_919419.1| - 0.0076 16.2 0.6 0.036 14.0 0.1 2.0 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|119718924|ref|YP_919419.1| - 0.0083 15.6 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|119718924|ref|YP_919419.1| - 0.0098 15.7 0.3 0.033 14.0 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|119718924|ref|YP_919419.1| - 0.012 15.2 0.0 0.085 12.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|119718924|ref|YP_919419.1| - 0.018 14.4 0.1 0.055 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|119718924|ref|YP_919419.1| - 0.018 14.5 0.1 2.6 7.4 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_5 PF07728.9 gi|119718924|ref|YP_919419.1| - 0.019 14.6 0.3 0.048 13.3 0.1 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|119718924|ref|YP_919419.1| - 0.02 14.8 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|119718924|ref|YP_919419.1| - 0.029 13.5 0.1 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit IstB_IS21 PF01695.12 gi|119718924|ref|YP_919419.1| - 0.03 13.7 0.1 0.3 10.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein KaiC PF06745.8 gi|119718924|ref|YP_919419.1| - 0.12 11.4 0.1 5.5 6.0 0.0 2.1 2 0 0 2 2 2 0 KaiC MobB PF03205.9 gi|119718924|ref|YP_919419.1| - 0.13 12.0 0.2 0.48 10.1 0.0 2.0 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|119718924|ref|YP_919419.1| - 0.15 11.7 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|119718924|ref|YP_919419.1| - 0.16 12.1 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase CbiQ PF02361.11 gi|119718925|ref|YP_919420.1| - 1.7e-20 73.5 11.1 1.7e-20 73.5 7.7 1.3 2 0 0 2 2 2 1 Cobalt transport protein BphX PF06139.7 gi|119718925|ref|YP_919420.1| - 0.71 9.4 0.1 0.71 9.4 0.0 3.0 2 1 1 3 3 3 0 BphX-like QueT PF06177.6 gi|119718926|ref|YP_919421.1| - 1.6e-06 28.1 13.6 2.2e-06 27.7 9.4 1.2 1 0 0 1 1 1 1 QueT transporter ECF-ribofla_trS PF07155.7 gi|119718926|ref|YP_919421.1| - 0.00045 19.9 20.2 0.00057 19.6 14.0 1.1 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component Transglut_core PF01841.14 gi|119718927|ref|YP_919422.1| - 4.6e-23 81.5 0.7 7.7e-23 80.8 0.1 1.7 2 0 0 2 2 2 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|119718927|ref|YP_919422.1| - 0.05 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Transglutaminase-like superfamily TPR_14 PF13428.1 gi|119718927|ref|YP_919422.1| - 1.4 9.7 4.2 1.3 9.8 0.1 2.9 4 0 0 4 4 4 0 Tetratricopeptide repeat ADK PF00406.17 gi|119718928|ref|YP_919423.1| - 8.3e-43 145.8 0.0 9.7e-43 145.6 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|119718928|ref|YP_919423.1| - 9.3e-16 57.2 5.3 1.5e-15 56.5 3.7 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|119718928|ref|YP_919423.1| - 3.3e-08 34.3 0.1 5.3e-08 33.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zn_ribbon_recom PF13408.1 gi|119718928|ref|YP_919423.1| - 1.7e-05 24.9 1.2 0.0051 17.0 0.1 2.4 1 1 1 2 2 2 1 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|119718928|ref|YP_919423.1| - 0.00087 18.4 0.3 0.1 11.8 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain AAA_33 PF13671.1 gi|119718928|ref|YP_919423.1| - 0.0021 17.9 0.1 0.0082 16.0 0.0 1.9 2 1 0 2 2 2 1 AAA domain DZR PF12773.2 gi|119718928|ref|YP_919423.1| - 0.0031 17.3 0.2 0.0053 16.5 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon Trm112p PF03966.11 gi|119718928|ref|YP_919423.1| - 0.006 16.9 0.6 0.0097 16.2 0.0 1.7 2 0 0 2 2 1 1 Trm112p-like protein HypA PF01155.14 gi|119718928|ref|YP_919423.1| - 0.0078 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|119718928|ref|YP_919423.1| - 0.012 15.0 1.4 0.031 13.7 1.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|119718928|ref|YP_919423.1| - 0.02 14.8 0.4 0.041 13.8 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|119718928|ref|YP_919423.1| - 0.048 13.4 1.2 6.7 6.5 0.1 2.8 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) AAA_28 PF13521.1 gi|119718928|ref|YP_919423.1| - 0.05 13.5 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119718928|ref|YP_919423.1| - 0.051 13.8 0.4 0.16 12.3 0.0 2.0 2 1 0 2 2 1 0 AAA domain zf-IS66 PF13005.2 gi|119718928|ref|YP_919423.1| - 0.052 13.5 0.9 4.3 7.3 0.1 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.14 gi|119718928|ref|YP_919423.1| - 0.093 12.2 1.3 1.8 8.1 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|119718928|ref|YP_919423.1| - 0.094 12.6 0.3 1.7 8.6 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme TF_Zn_Ribbon PF08271.7 gi|119718928|ref|YP_919423.1| - 0.095 12.0 3.5 0.28 10.5 2.5 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|119718928|ref|YP_919423.1| - 0.11 12.0 0.4 8.8 5.9 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Ogr_Delta PF04606.7 gi|119718928|ref|YP_919423.1| - 0.14 11.8 0.4 14 5.4 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger AAA PF00004.24 gi|119718928|ref|YP_919423.1| - 0.16 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) OrfB_Zn_ribbon PF07282.6 gi|119718928|ref|YP_919423.1| - 0.17 11.5 1.1 0.37 10.4 0.8 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|119718928|ref|YP_919423.1| - 0.2 11.3 3.5 7.1 6.4 2.9 2.5 1 1 1 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|119718928|ref|YP_919423.1| - 0.38 10.8 2.7 13 5.8 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1610 PF07754.6 gi|119718928|ref|YP_919423.1| - 0.71 10.0 8.3 0.57 10.3 0.2 2.8 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) DUF35_N PF12172.3 gi|119718928|ref|YP_919423.1| - 1.2 9.1 5.3 21 5.2 3.7 2.4 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AAA_assoc_C PF09821.4 gi|119718930|ref|YP_919425.1| - 8.2e-25 87.4 0.0 1.1e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain Herpes_UL69 PF05459.7 gi|119718930|ref|YP_919425.1| - 0.032 13.3 0.0 0.042 13.0 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus transcriptional regulator family HemN_C PF06969.11 gi|119718930|ref|YP_919425.1| - 0.068 13.2 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain BPD_transp_1 PF00528.17 gi|119718931|ref|YP_919426.1| - 1.2e-25 90.1 44.5 6.2e-15 55.1 9.4 2.8 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component FUSC-like PF12805.2 gi|119718931|ref|YP_919426.1| - 0.95 8.3 6.2 3 6.6 4.3 1.9 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS ABC_tran PF00005.22 gi|119718932|ref|YP_919427.1| - 1.3e-28 100.0 0.0 1.9e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119718932|ref|YP_919427.1| - 1.8e-10 41.2 0.0 0.00057 19.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119718932|ref|YP_919427.1| - 4.3e-05 23.5 0.0 5.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|119718932|ref|YP_919427.1| - 0.00037 19.7 0.0 0.00056 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|119718932|ref|YP_919427.1| - 0.00069 19.8 0.1 0.0038 17.4 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|119718932|ref|YP_919427.1| - 0.0015 18.2 0.0 0.0034 17.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|119718932|ref|YP_919427.1| - 0.0024 17.5 0.0 0.005 16.5 0.0 1.5 2 0 0 2 2 1 1 Archaeal ATPase SMC_N PF02463.14 gi|119718932|ref|YP_919427.1| - 0.003 16.7 0.0 0.24 10.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|119718932|ref|YP_919427.1| - 0.0033 17.5 0.0 0.005 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|119718932|ref|YP_919427.1| - 0.0045 16.6 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_15 PF13175.1 gi|119718932|ref|YP_919427.1| - 0.0046 16.0 0.0 0.064 12.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|119718932|ref|YP_919427.1| - 0.0048 17.2 0.2 0.0073 16.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|119718932|ref|YP_919427.1| - 0.0073 16.2 0.1 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|119718932|ref|YP_919427.1| - 0.0091 16.8 0.0 0.018 15.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|119718932|ref|YP_919427.1| - 0.0094 16.2 0.1 0.022 15.0 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|119718932|ref|YP_919427.1| - 0.015 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|119718932|ref|YP_919427.1| - 0.02 14.8 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|119718932|ref|YP_919427.1| - 0.03 13.1 0.1 0.087 11.6 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_10 PF12846.2 gi|119718932|ref|YP_919427.1| - 0.043 13.2 0.0 0.085 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|119718932|ref|YP_919427.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|119718932|ref|YP_919427.1| - 0.061 13.8 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein Rad17 PF03215.10 gi|119718932|ref|YP_919427.1| - 0.071 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|119718932|ref|YP_919427.1| - 0.088 11.3 0.1 1 7.8 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class PduV-EutP PF10662.4 gi|119718932|ref|YP_919427.1| - 0.091 12.2 0.3 0.19 11.2 0.0 1.5 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|119718932|ref|YP_919427.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119718932|ref|YP_919427.1| - 0.11 12.3 0.1 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain Cupin_2 PF07883.6 gi|119718933|ref|YP_919428.1| - 4.2e-05 22.9 0.1 6.3e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain 3-HAO PF06052.7 gi|119718933|ref|YP_919428.1| - 0.12 11.7 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase DUF642 PF04862.7 gi|119718934|ref|YP_919429.1| - 0.06 12.9 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF642) Nuc_deoxyrib_tr PF05014.10 gi|119718935|ref|YP_919430.1| - 1.2e-16 60.5 0.0 1.3e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase TIR_2 PF13676.1 gi|119718935|ref|YP_919430.1| - 0.028 14.5 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 TIR domain DUF4406 PF14359.1 gi|119718935|ref|YP_919430.1| - 0.068 13.2 0.0 0.099 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4406) AsnC_trans_reg PF01037.16 gi|119718936|ref|YP_919431.1| - 5.9e-22 77.1 0.2 9.7e-22 76.4 0.2 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|119718936|ref|YP_919431.1| - 6.9e-14 50.9 1.1 6.9e-14 50.9 0.7 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|119718936|ref|YP_919431.1| - 8.3e-12 44.4 0.5 1.7e-11 43.4 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|119718936|ref|YP_919431.1| - 1.6e-05 24.3 0.0 2.8e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|119718936|ref|YP_919431.1| - 0.0007 19.2 0.1 0.0018 17.9 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|119718936|ref|YP_919431.1| - 0.0021 17.8 0.1 0.0037 17.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|119718936|ref|YP_919431.1| - 0.0029 17.2 0.1 0.0082 15.8 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|119718936|ref|YP_919431.1| - 0.016 14.8 0.1 0.043 13.4 0.1 1.7 1 0 0 1 1 1 0 MarR family RRM_3 PF08777.6 gi|119718937|ref|YP_919432.1| - 0.098 12.5 0.0 6.3 6.7 0.0 2.4 2 1 0 2 2 2 0 RNA binding motif Imp-YgjV PF10688.4 gi|119718938|ref|YP_919433.1| - 0.099 12.0 0.2 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 Bacterial inner membrane protein Exosortase_EpsH PF09721.5 gi|119718938|ref|YP_919433.1| - 0.13 11.4 4.8 0.14 11.2 3.3 1.0 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) LAB_N PF07578.6 gi|119718938|ref|YP_919433.1| - 0.18 11.7 1.6 0.28 11.1 1.1 1.5 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain HAD_2 PF13419.1 gi|119718939|ref|YP_919434.1| - 8e-21 75.0 0.0 9.4e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|119718939|ref|YP_919434.1| - 4e-09 37.2 0.0 1.7e-08 35.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|119718939|ref|YP_919434.1| - 6.7e-09 35.3 0.0 1.1e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like DUF4443 PF14544.1 gi|119718940|ref|YP_919435.1| - 3.6e-06 26.8 0.0 5.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) HTH_12 PF08461.5 gi|119718940|ref|YP_919435.1| - 0.00017 21.2 0.0 0.00041 20.0 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|119718940|ref|YP_919435.1| - 0.0026 17.3 0.1 0.0049 16.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PaaX PF07848.7 gi|119718940|ref|YP_919435.1| - 0.053 13.5 0.1 0.096 12.6 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_20 PF12840.2 gi|119718940|ref|YP_919435.1| - 0.055 13.2 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.5 gi|119718940|ref|YP_919435.1| - 0.097 12.3 0.0 0.24 11.1 0.0 1.6 1 1 1 2 2 2 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|119718940|ref|YP_919435.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|119718940|ref|YP_919435.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4430 PF14478.1 gi|119718941|ref|YP_919436.1| - 1.6e-10 40.9 1.0 2.6e-10 40.2 0.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4430) ECF-ribofla_trS PF07155.7 gi|119718942|ref|YP_919437.1| - 6.1e-10 39.0 15.3 8.3e-10 38.6 10.3 1.4 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|119718942|ref|YP_919437.1| - 0.0001 22.2 22.0 0.0004 20.3 15.2 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) CbiM PF01891.11 gi|119718942|ref|YP_919437.1| - 0.099 12.2 14.4 0.12 11.9 10.0 1.2 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region 7tm_7 PF08395.7 gi|119718943|ref|YP_919438.1| - 0.062 12.3 3.3 0.068 12.1 2.3 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor FixQ PF05545.6 gi|119718943|ref|YP_919438.1| - 0.07 12.7 0.7 0.07 12.7 0.5 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ CopD PF05425.8 gi|119718943|ref|YP_919438.1| - 0.17 12.1 7.8 0.19 11.9 5.4 1.2 1 0 0 1 1 1 0 Copper resistance protein D Yip1 PF04893.12 gi|119718943|ref|YP_919438.1| - 0.17 11.3 7.8 0.21 11.0 5.4 1.1 1 0 0 1 1 1 0 Yip1 domain Class_IIIsignal PF04021.7 gi|119718943|ref|YP_919438.1| - 2.4 7.9 9.3 0.78 9.5 0.7 2.4 2 0 0 2 2 2 0 Class III signal peptide Thioredoxin_4 PF13462.1 gi|119718944|ref|YP_919439.1| - 1.2e-06 28.6 0.0 2.2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|119718944|ref|YP_919439.1| - 2.6e-05 24.3 0.0 0.00018 21.7 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain FAD-SLDH PF12318.3 gi|119718944|ref|YP_919439.1| - 0.089 12.4 0.2 0.18 11.4 0.0 1.5 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase Tctex-1 PF03645.8 gi|119718944|ref|YP_919439.1| - 0.095 12.5 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Tctex-1 family DUF2819 PF10995.3 gi|119718944|ref|YP_919439.1| - 0.17 10.5 0.0 0.28 9.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2819) Aminotran_1_2 PF00155.16 gi|119718945|ref|YP_919440.1| - 3.1e-62 210.6 0.0 3.8e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|119718945|ref|YP_919440.1| - 2.5e-10 39.9 0.0 1.2e-09 37.7 0.0 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|119718945|ref|YP_919440.1| - 2.7e-07 30.0 0.0 4.3e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|119718945|ref|YP_919440.1| - 3.5e-07 29.2 0.0 3.3e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|119718945|ref|YP_919440.1| - 0.00044 18.6 0.0 0.00062 18.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme TP_methylase PF00590.15 gi|119718945|ref|YP_919440.1| - 0.028 14.1 0.0 0.19 11.4 0.0 2.4 3 0 0 3 3 3 0 Tetrapyrrole (Corrin/Porphyrin) Methylases PIN PF01850.16 gi|119718946|ref|YP_919441.1| - 6.8e-15 55.4 4.9 7.7e-15 55.2 3.4 1.0 1 0 0 1 1 1 1 PIN domain Lipase_GDSL_2 PF13472.1 gi|119718946|ref|YP_919441.1| - 0.011 15.9 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family UPF0278 PF08745.6 gi|119718946|ref|YP_919441.1| - 0.011 14.9 0.0 0.048 12.8 0.0 1.9 2 0 0 2 2 2 0 UPF0278 family PIN_4 PF13638.1 gi|119718946|ref|YP_919441.1| - 0.037 14.1 0.9 0.45 10.6 0.6 2.0 1 1 0 1 1 1 0 PIN domain Rho_N PF07498.7 gi|119718946|ref|YP_919441.1| - 0.13 12.0 0.1 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Rho termination factor, N-terminal domain Epimerase PF01370.16 gi|119718949|ref|YP_919444.1| - 6.6e-55 186.1 0.1 8e-55 185.8 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|119718949|ref|YP_919444.1| - 1.1e-34 119.3 0.0 1.5e-34 119.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|119718949|ref|YP_919444.1| - 1e-21 77.0 0.0 1.2e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|119718949|ref|YP_919444.1| - 6.6e-18 64.6 0.0 4.7e-17 61.8 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|119718949|ref|YP_919444.1| - 4.3e-17 62.7 0.3 5.7e-17 62.3 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|119718949|ref|YP_919444.1| - 4e-13 49.1 0.0 5.1e-08 32.4 0.1 2.1 2 0 0 2 2 2 2 NmrA-like family NAD_binding_4 PF07993.7 gi|119718949|ref|YP_919444.1| - 1.2e-12 47.2 0.1 2.6e-11 42.9 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|119718949|ref|YP_919444.1| - 2.1e-12 47.2 1.1 2.1e-12 47.2 0.7 1.6 2 0 0 2 2 1 1 short chain dehydrogenase KR PF08659.5 gi|119718949|ref|YP_919444.1| - 1.5e-07 31.2 0.4 2.8e-07 30.3 0.3 1.3 1 0 0 1 1 1 1 KR domain Epimerase_Csub PF13950.1 gi|119718949|ref|YP_919444.1| - 9.6e-05 22.2 0.0 0.0002 21.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Saccharop_dh PF03435.13 gi|119718949|ref|YP_919444.1| - 0.00055 19.0 0.2 0.00079 18.5 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|119718949|ref|YP_919444.1| - 0.00095 19.1 0.2 0.0021 18.0 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain DAO PF01266.19 gi|119718949|ref|YP_919444.1| - 0.001 18.0 0.1 0.0032 16.4 0.0 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|119718949|ref|YP_919444.1| - 0.0076 16.2 0.1 0.032 14.2 0.1 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|119718949|ref|YP_919444.1| - 0.0094 15.6 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_trans_4_4 PF13579.1 gi|119718949|ref|YP_919444.1| - 0.016 15.3 0.7 0.016 15.3 0.5 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain UDPG_MGDP_dh_N PF03721.9 gi|119718949|ref|YP_919444.1| - 0.017 14.4 0.1 0.033 13.5 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.18 gi|119718949|ref|YP_919444.1| - 0.045 13.5 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Glyco_transf_4 PF13439.1 gi|119718949|ref|YP_919444.1| - 0.049 13.3 0.3 0.14 11.8 0.1 1.9 2 0 0 2 2 1 0 Glycosyltransferase Family 4 AAA_17 PF13207.1 gi|119718949|ref|YP_919444.1| - 0.092 13.5 0.0 0.25 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain DFP PF04127.10 gi|119718949|ref|YP_919444.1| - 0.14 11.7 0.0 0.34 10.5 0.0 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Rubrerythrin PF02915.12 gi|119718951|ref|YP_919446.1| - 5.9e-07 29.8 0.4 1e-06 29.1 0.3 1.4 1 1 0 1 1 1 1 Rubrerythrin FA_desaturase_2 PF03405.9 gi|119718951|ref|YP_919446.1| - 0.0011 17.8 0.0 0.0034 16.1 0.0 1.7 1 1 0 1 1 1 1 Fatty acid desaturase Ferritin PF00210.19 gi|119718951|ref|YP_919446.1| - 0.0015 18.2 0.2 0.002 17.8 0.2 1.3 1 0 0 1 1 1 1 Ferritin-like domain TrmB PF01978.14 gi|119718953|ref|YP_919448.1| - 0.00011 21.8 0.0 0.00024 20.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB CYTH PF01928.16 gi|119718956|ref|YP_919451.1| - 5.9e-33 114.0 1.0 6.8e-33 113.8 0.7 1.0 1 0 0 1 1 1 1 CYTH domain F-box PF00646.28 gi|119718956|ref|YP_919451.1| - 0.0034 17.0 0.0 0.035 13.7 0.0 2.2 2 0 0 2 2 2 1 F-box domain ECF-ribofla_trS PF07155.7 gi|119718957|ref|YP_919452.1| - 0.53 9.9 8.8 0.1 12.3 3.5 1.6 2 0 0 2 2 2 0 ECF-type riboflavin transporter, S component Pyr_redox_2 PF07992.9 gi|119718958|ref|YP_919453.1| - 2.2e-34 119.1 0.2 2.7e-34 118.8 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|119718958|ref|YP_919453.1| - 3.9e-12 45.7 2.9 4e-06 25.9 1.4 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|119718958|ref|YP_919453.1| - 1.2e-11 45.0 0.2 5.8e-08 33.0 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|119718958|ref|YP_919453.1| - 3.1e-07 29.6 5.6 2.5e-06 26.6 2.0 2.6 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|119718958|ref|YP_919453.1| - 4.1e-07 29.4 1.4 8.4e-06 25.1 0.5 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|119718958|ref|YP_919453.1| - 1e-05 25.8 0.2 0.043 14.2 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|119718958|ref|YP_919453.1| - 1.2e-05 24.3 4.5 0.00021 20.2 1.0 2.9 2 1 1 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|119718958|ref|YP_919453.1| - 2.5e-05 22.9 1.8 0.012 14.1 0.6 2.2 1 1 1 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|119718958|ref|YP_919453.1| - 5.8e-05 23.0 0.2 5.8e-05 23.0 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|119718958|ref|YP_919453.1| - 7.1e-05 22.0 2.1 8.6e-05 21.7 0.1 2.0 2 1 0 3 3 3 1 Thi4 family NAD_binding_9 PF13454.1 gi|119718958|ref|YP_919453.1| - 0.0013 18.4 1.3 0.19 11.4 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|119718958|ref|YP_919453.1| - 0.012 14.5 0.8 0.028 13.3 0.4 1.7 1 1 1 2 2 2 0 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|119718958|ref|YP_919453.1| - 0.038 13.0 0.2 0.062 12.3 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.1 gi|119718958|ref|YP_919453.1| - 0.11 12.7 0.1 4.8 7.4 0.1 2.3 2 1 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|119718958|ref|YP_919453.1| - 0.15 10.6 2.3 0.16 10.5 0.9 1.6 1 1 1 2 2 2 0 Tryptophan halogenase Radical_SAM PF04055.16 gi|119718959|ref|YP_919454.1| - 1.6e-24 86.9 0.0 3.7e-24 85.7 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|119718959|ref|YP_919454.1| - 0.00034 20.7 0.0 0.00065 19.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|119718959|ref|YP_919454.1| - 0.0017 18.0 0.1 0.0017 18.0 0.0 2.6 3 0 0 3 3 3 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|119718959|ref|YP_919454.1| - 0.0022 17.1 1.5 0.0022 17.1 1.1 2.8 2 1 0 2 2 2 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|119718959|ref|YP_919454.1| - 0.0024 17.5 1.2 2.2 8.0 0.0 2.7 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.6 gi|119718959|ref|YP_919454.1| - 0.0066 15.9 1.2 1 8.9 0.1 2.5 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain Fer4_14 PF13394.1 gi|119718959|ref|YP_919454.1| - 0.032 14.2 1.5 0.037 14.0 0.0 1.8 2 0 0 2 2 1 0 4Fe-4S single cluster domain zf-C3HC4_3 PF13920.1 gi|119718959|ref|YP_919454.1| - 0.033 13.8 0.3 0.033 13.8 0.2 2.5 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.6 gi|119718959|ref|YP_919454.1| - 0.27 10.8 1.6 2.9 7.6 1.0 2.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.9 gi|119718959|ref|YP_919454.1| - 0.33 10.4 0.1 0.33 10.4 0.0 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C4_Topoisom PF01396.14 gi|119718959|ref|YP_919454.1| - 0.34 10.4 0.1 0.34 10.4 0.1 3.7 4 0 0 4 4 3 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|119718959|ref|YP_919454.1| - 0.38 10.7 2.5 4.2 7.3 0.0 2.9 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-ISL3 PF14690.1 gi|119718959|ref|YP_919454.1| - 0.84 9.7 13.7 0.4 10.7 0.4 2.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|119718959|ref|YP_919454.1| - 0.91 9.0 12.7 0.45 10.0 0.1 3.1 3 0 0 3 3 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|119718959|ref|YP_919454.1| - 2.7 7.5 8.7 2.1 7.9 0.1 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_KTR PF14205.1 gi|119718959|ref|YP_919454.1| - 4.4 6.8 6.1 23 4.5 0.1 3.0 3 0 0 3 3 3 0 Cysteine-rich KTR HD PF01966.17 gi|119718960|ref|YP_919455.1| - 8.4e-09 35.4 0.3 1.7e-08 34.4 0.2 1.7 1 1 0 1 1 1 1 HD domain DSPc PF00782.15 gi|119718960|ref|YP_919455.1| - 4.5e-06 26.2 0.0 6.8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain HDOD PF08668.7 gi|119718960|ref|YP_919455.1| - 0.0018 17.6 0.0 0.0041 16.4 0.0 1.6 1 1 1 2 2 2 1 HDOD domain CDKN3 PF05706.7 gi|119718960|ref|YP_919455.1| - 0.0063 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.22 gi|119718960|ref|YP_919455.1| - 0.012 14.9 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein-tyrosine phosphatase Y_phosphatase3 PF13350.1 gi|119718960|ref|YP_919455.1| - 0.022 15.0 0.1 0.34 11.1 0.1 2.3 1 1 0 2 2 2 0 Tyrosine phosphatase family PmbA_TldD PF01523.11 gi|119718961|ref|YP_919456.1| - 7.9e-73 245.2 5.1 1e-72 244.9 3.2 1.4 2 0 0 2 2 2 1 Putative modulator of DNA gyrase DUF3924 PF13062.1 gi|119718961|ref|YP_919456.1| - 0.041 13.7 0.0 0.085 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3924) PmbA_TldD PF01523.11 gi|119718962|ref|YP_919457.1| - 1.4e-51 175.5 0.3 1.4e-51 175.5 0.2 1.5 2 0 0 2 2 2 1 Putative modulator of DNA gyrase DUF1799 PF08809.6 gi|119718962|ref|YP_919457.1| - 0.039 13.7 0.0 0.091 12.5 0.0 1.6 1 0 0 1 1 1 0 Phage related hypothetical protein (DUF1799) FdhE PF04216.7 gi|119718963|ref|YP_919458.1| - 5.4e-30 105.1 0.0 7e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-TFIIB PF13453.1 gi|119718963|ref|YP_919458.1| - 0.0014 17.7 7.7 0.041 13.0 0.6 2.4 2 0 0 2 2 2 2 Transcription factor zinc-finger Elf1 PF05129.8 gi|119718963|ref|YP_919458.1| - 0.0021 17.7 1.1 0.65 9.7 0.1 2.4 1 1 1 2 2 2 2 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|119718963|ref|YP_919458.1| - 0.005 16.4 5.6 0.087 12.5 0.3 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|119718963|ref|YP_919458.1| - 0.017 15.0 2.5 2.5 8.0 0.3 2.3 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Prim_Zn_Ribbon PF08273.7 gi|119718963|ref|YP_919458.1| - 0.025 14.6 3.8 0.025 14.6 2.6 3.4 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase TF_Zn_Ribbon PF08271.7 gi|119718963|ref|YP_919458.1| - 0.044 13.1 0.6 0.044 13.1 0.4 3.3 2 1 1 3 3 3 0 TFIIB zinc-binding TniQ PF06527.6 gi|119718963|ref|YP_919458.1| - 0.065 13.4 0.1 0.13 12.5 0.0 1.5 2 0 0 2 2 1 0 TniQ Lar_restr_allev PF14354.1 gi|119718963|ref|YP_919458.1| - 0.07 13.4 9.0 1.5 9.1 0.5 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.1 gi|119718963|ref|YP_919458.1| - 0.1 12.2 6.2 0.63 9.7 2.2 2.9 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.7 gi|119718963|ref|YP_919458.1| - 0.18 11.5 4.9 5.2 6.9 0.1 3.2 3 0 0 3 3 3 0 PhnA Zinc-Ribbon DZR PF12773.2 gi|119718963|ref|YP_919458.1| - 0.21 11.4 8.3 0.097 12.4 2.6 2.2 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|119718963|ref|YP_919458.1| - 0.4 10.4 8.2 0.42 10.3 1.4 2.7 2 1 0 2 2 2 0 Nudix N-terminal Cys_rich_KTR PF14205.1 gi|119718963|ref|YP_919458.1| - 0.51 9.8 3.4 12 5.4 0.4 2.7 2 0 0 2 2 2 0 Cysteine-rich KTR Cys_rich_CPXG PF14255.1 gi|119718963|ref|YP_919458.1| - 1.5 8.7 3.8 5.1 7.0 0.0 2.8 2 1 0 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.7 gi|119718963|ref|YP_919458.1| - 2.3 8.3 5.3 14 5.9 0.2 2.6 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF35_N PF12172.3 gi|119718963|ref|YP_919458.1| - 2.4 8.1 10.3 2.1 8.3 1.8 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF89 PF01937.14 gi|119718964|ref|YP_919459.1| - 2.1e-45 155.0 0.0 2.3e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 UPRTase PF14681.1 gi|119718965|ref|YP_919460.1| - 4.1e-49 166.5 0.0 4.7e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|119718965|ref|YP_919460.1| - 7.9e-07 28.8 0.1 2.3e-06 27.3 0.1 1.8 2 1 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|119718965|ref|YP_919460.1| - 0.045 13.0 0.0 0.071 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase BON PF04972.12 gi|119718966|ref|YP_919461.1| - 0.012 15.3 0.5 0.04 13.6 0.4 1.9 1 1 0 1 1 1 0 BON domain CcdA PF07362.7 gi|119718967|ref|YP_919462.1| - 0.0035 17.1 0.6 0.0054 16.5 0.2 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|119718967|ref|YP_919462.1| - 0.012 15.4 5.2 0.69 9.8 1.8 2.9 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family PI31_Prot_N PF11566.3 gi|119718967|ref|YP_919462.1| - 0.014 15.0 0.1 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 PI31 proteasome regulator N-terminal CoaE PF01121.15 gi|119718967|ref|YP_919462.1| - 0.03 13.7 2.0 0.037 13.4 1.3 1.2 1 1 0 1 1 1 0 Dephospho-CoA kinase mIF3 PF14877.1 gi|119718967|ref|YP_919462.1| - 0.046 13.0 0.6 0.047 13.0 0.4 1.0 1 0 0 1 1 1 0 Mitochondrial translation initiation factor PSK_trans_fac PF07704.6 gi|119718967|ref|YP_919462.1| - 0.69 10.6 3.6 1.1 10.0 2.5 1.5 1 1 0 1 1 1 0 Rv0623-like transcription factor PIN PF01850.16 gi|119718968|ref|YP_919463.1| - 1.6e-14 54.2 1.7 1.8e-14 54.0 1.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|119718968|ref|YP_919463.1| - 3.4e-05 23.8 0.1 4.7e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|119718968|ref|YP_919463.1| - 0.017 15.7 0.3 0.02 15.5 0.2 1.2 1 0 0 1 1 1 0 PIN domain Tol_Tol_Ttg2 PF05494.7 gi|119718968|ref|YP_919463.1| - 0.17 11.3 0.7 0.46 10.0 0.1 1.8 2 0 0 2 2 2 0 Toluene tolerance, Ttg2 TauE PF01925.14 gi|119718969|ref|YP_919464.1| - 1.9e-41 142.0 45.1 2.2e-41 141.9 31.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3656 PF12392.3 gi|119718970|ref|YP_919465.1| - 0.11 12.6 0.2 8.8 6.4 0.0 2.1 2 0 0 2 2 2 0 Collagenase AA_permease_2 PF13520.1 gi|119718971|ref|YP_919466.1| - 1.6e-36 125.8 41.2 1.9e-36 125.5 28.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|119718971|ref|YP_919466.1| - 5.7e-36 123.8 38.6 7.8e-36 123.4 26.8 1.1 1 0 0 1 1 1 1 Amino acid permease DUF1628 PF07790.6 gi|119718973|ref|YP_919468.1| - 0.28 11.9 12.1 0.61 10.8 7.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) DUF3992 PF13157.1 gi|119718974|ref|YP_919469.1| - 0.32 11.2 2.9 0.2 11.8 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3992) Glucodextran_B PF09136.5 gi|119718974|ref|YP_919469.1| - 1.4 9.0 5.3 0.15 12.2 0.7 1.6 2 0 0 2 2 2 0 Glucodextranase, domain B Thioredoxin_3 PF13192.1 gi|119718976|ref|YP_919471.1| - 0.00025 20.7 0.0 0.0015 18.2 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin domain Amidohydro_1 PF01979.15 gi|119718977|ref|YP_919472.1| - 1.1e-33 117.2 0.0 1.5e-33 116.8 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|119718977|ref|YP_919472.1| - 8.1e-11 41.5 0.1 2.5e-10 40.0 0.0 1.9 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|119718977|ref|YP_919472.1| - 2.9e-07 30.0 1.5 0.01 15.0 0.0 2.8 3 0 0 3 3 3 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|119718977|ref|YP_919472.1| - 1e-06 29.0 4.3 0.017 15.1 0.1 2.9 2 1 0 2 2 2 2 Amidohydrolase PNP_UDP_1 PF01048.15 gi|119718978|ref|YP_919473.1| - 1.7e-42 145.0 0.5 2.1e-42 144.7 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Methyltransf_21 PF05050.7 gi|119718979|ref|YP_919474.1| - 3.5e-15 56.3 0.0 4.9e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|119718979|ref|YP_919474.1| - 6.9e-08 32.3 0.0 1.5e-07 31.2 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|119718979|ref|YP_919474.1| - 3.4e-06 27.6 0.0 8.2e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119718979|ref|YP_919474.1| - 8.2e-06 25.2 0.0 3.4e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|119718979|ref|YP_919474.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|119718979|ref|YP_919474.1| - 0.025 13.6 0.0 0.036 13.1 0.0 1.1 1 0 0 1 1 1 0 Vibrio cholerae RfbT protein Methyltransf_31 PF13847.1 gi|119718979|ref|YP_919474.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PNP_UDP_1 PF01048.15 gi|119718980|ref|YP_919475.1| - 7.1e-36 123.3 0.6 8.2e-36 123.1 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF356 PF04009.7 gi|119718981|ref|YP_919476.1| - 0.025 14.6 0.2 0.041 13.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF356) ECF-ribofla_trS PF07155.7 gi|119718982|ref|YP_919477.1| - 6e-35 120.4 15.9 7.3e-35 120.1 11.0 1.0 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|119718982|ref|YP_919477.1| - 3.6e-07 30.2 14.2 4.9e-07 29.8 9.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) 5TM-5TMR_LYT PF07694.7 gi|119718982|ref|YP_919477.1| - 0.0012 18.2 10.8 0.0016 17.7 7.5 1.3 1 0 0 1 1 1 1 5TMR of 5TMR-LYT bPH_2 PF03703.9 gi|119718983|ref|YP_919478.1| - 6.6e-05 22.8 0.2 0.00012 21.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial PH domain CbiQ PF02361.11 gi|119718984|ref|YP_919479.1| - 5.3e-13 49.0 13.4 1.3e-12 47.8 9.3 1.6 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|119718985|ref|YP_919480.1| - 9.1e-48 162.0 0.0 1.8e-23 83.3 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|119718985|ref|YP_919480.1| - 4.1e-27 95.8 0.3 7e-07 29.4 0.0 4.1 4 0 0 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|119718985|ref|YP_919480.1| - 1.2e-13 50.3 0.6 8.9e-07 28.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119718985|ref|YP_919480.1| - 2.3e-13 49.9 0.0 0.0027 16.9 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|119718985|ref|YP_919480.1| - 1.2e-10 41.1 0.2 0.00036 19.9 0.1 3.0 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|119718985|ref|YP_919480.1| - 7.5e-10 39.4 0.0 2.2e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119718985|ref|YP_919480.1| - 5e-09 36.4 4.0 0.00022 21.2 0.0 2.7 3 0 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|119718985|ref|YP_919480.1| - 7e-09 35.9 0.2 0.00038 20.6 0.0 2.6 3 0 0 3 3 2 2 AAA domain T2SE PF00437.15 gi|119718985|ref|YP_919480.1| - 6.7e-08 31.7 1.1 0.013 14.4 0.0 3.3 4 0 0 4 4 4 2 Type II/IV secretion system protein AAA_15 PF13175.1 gi|119718985|ref|YP_919480.1| - 2.9e-07 29.9 0.0 0.083 11.9 0.0 3.5 4 0 0 4 4 4 1 AAA ATPase domain AAA_19 PF13245.1 gi|119718985|ref|YP_919480.1| - 3.5e-07 29.8 5.5 0.0002 21.0 0.1 3.5 3 0 0 3 3 3 2 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|119718985|ref|YP_919480.1| - 4.1e-07 29.6 0.3 0.027 13.9 0.0 2.8 3 0 0 3 3 3 2 FtsK/SpoIIIE family DUF258 PF03193.11 gi|119718985|ref|YP_919480.1| - 1.7e-06 27.2 0.5 0.031 13.4 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|119718985|ref|YP_919480.1| - 1.8e-06 27.8 0.4 0.0098 15.6 0.0 3.2 3 0 0 3 3 3 1 Archaeal ATPase NACHT PF05729.7 gi|119718985|ref|YP_919480.1| - 1.9e-06 27.6 0.3 0.0095 15.6 0.0 2.3 2 0 0 2 2 2 2 NACHT domain AAA_10 PF12846.2 gi|119718985|ref|YP_919480.1| - 3.9e-06 26.5 0.8 0.028 13.8 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain AAA_33 PF13671.1 gi|119718985|ref|YP_919480.1| - 6.1e-06 26.1 0.3 0.036 13.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|119718985|ref|YP_919480.1| - 1.9e-05 24.3 0.2 0.0085 15.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|119718985|ref|YP_919480.1| - 2.7e-05 24.4 1.2 0.022 14.9 0.0 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|119718985|ref|YP_919480.1| - 3.8e-05 23.4 1.5 0.073 12.8 0.1 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|119718985|ref|YP_919480.1| - 7.6e-05 22.6 0.6 0.39 10.6 0.0 3.1 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.12 gi|119718985|ref|YP_919480.1| - 8.8e-05 21.9 0.9 0.039 13.3 0.0 2.8 3 0 0 3 3 3 1 IstB-like ATP binding protein MobB PF03205.9 gi|119718985|ref|YP_919480.1| - 0.00012 21.8 0.5 0.097 12.3 0.1 2.8 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|119718985|ref|YP_919480.1| - 0.00014 21.4 0.4 0.3 10.7 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|119718985|ref|YP_919480.1| - 0.00017 21.1 1.8 0.092 12.1 0.1 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|119718985|ref|YP_919480.1| - 0.00019 22.2 4.6 0.04 14.7 0.3 3.1 3 0 0 3 3 2 1 AAA domain Mg_chelatase PF01078.16 gi|119718985|ref|YP_919480.1| - 0.0003 20.0 4.8 0.35 9.9 0.0 3.2 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|119718985|ref|YP_919480.1| - 0.00052 20.0 2.0 0.18 11.7 0.0 2.7 3 0 0 3 3 2 1 AAA domain Miro PF08477.8 gi|119718985|ref|YP_919480.1| - 0.00061 20.2 0.1 0.3 11.5 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein AAA_13 PF13166.1 gi|119718985|ref|YP_919480.1| - 0.00077 18.0 0.0 0.21 10.0 0.0 3.1 4 0 0 4 4 3 1 AAA domain MutS_V PF00488.16 gi|119718985|ref|YP_919480.1| - 0.00088 18.7 0.0 0.055 12.8 0.0 2.2 2 0 0 2 2 2 1 MutS domain V AAA_24 PF13479.1 gi|119718985|ref|YP_919480.1| - 0.00091 18.8 0.6 1 8.8 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|119718985|ref|YP_919480.1| - 0.0012 19.0 1.0 1.1 9.5 0.0 2.8 3 0 0 3 3 2 1 AAA domain G-alpha PF00503.15 gi|119718985|ref|YP_919480.1| - 0.0014 17.3 0.2 1 7.9 0.0 2.1 2 0 0 2 2 2 2 G-protein alpha subunit ABC_ATPase PF09818.4 gi|119718985|ref|YP_919480.1| - 0.0016 17.0 0.4 0.019 13.5 0.0 2.5 3 0 0 3 3 3 1 Predicted ATPase of the ABC class ATP_bind_1 PF03029.12 gi|119718985|ref|YP_919480.1| - 0.003 17.1 0.2 0.62 9.5 0.0 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|119718985|ref|YP_919480.1| - 0.0037 17.4 0.2 2.2 8.5 0.0 2.3 2 0 0 2 2 2 1 RNA helicase MMR_HSR1 PF01926.18 gi|119718985|ref|YP_919480.1| - 0.0037 17.1 0.2 3 7.8 0.1 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|119718985|ref|YP_919480.1| - 0.0041 16.5 0.9 0.51 9.8 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation TIP49 PF06068.8 gi|119718985|ref|YP_919480.1| - 0.0041 15.8 0.2 1.1 7.9 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus SRP54 PF00448.17 gi|119718985|ref|YP_919480.1| - 0.0052 16.2 2.1 0.21 11.0 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|119718985|ref|YP_919480.1| - 0.0071 16.0 1.4 0.9 9.2 0.1 3.1 3 0 0 3 3 3 1 NTPase Rad17 PF03215.10 gi|119718985|ref|YP_919480.1| - 0.013 14.1 0.5 2.3 6.7 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein PhoH PF02562.11 gi|119718985|ref|YP_919480.1| - 0.014 14.6 0.0 2.7 7.1 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.7 gi|119718985|ref|YP_919480.1| - 0.017 14.2 0.5 2.1 7.3 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin PIF1 PF05970.9 gi|119718985|ref|YP_919480.1| - 0.021 13.7 0.0 0.61 8.9 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase KaiC PF06745.8 gi|119718985|ref|YP_919480.1| - 0.072 12.2 3.7 4.6 6.3 0.1 3.9 4 1 0 4 4 4 0 KaiC RuvB_N PF05496.7 gi|119718985|ref|YP_919480.1| - 0.078 12.0 1.1 2.6 7.0 0.0 2.7 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus AAA_PrkA PF08298.6 gi|119718985|ref|YP_919480.1| - 0.081 11.5 1.3 0.99 8.0 0.1 2.5 3 0 0 3 3 2 0 PrkA AAA domain Dynamin_N PF00350.18 gi|119718985|ref|YP_919480.1| - 0.097 12.4 0.6 7.5 6.3 0.1 2.3 2 0 0 2 2 2 0 Dynamin family Viral_helicase1 PF01443.13 gi|119718985|ref|YP_919480.1| - 0.11 12.0 0.2 12 5.3 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.20 gi|119718985|ref|YP_919480.1| - 0.13 11.7 0.1 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ArgK PF03308.11 gi|119718985|ref|YP_919480.1| - 0.15 10.7 0.6 4.6 5.9 0.1 2.5 2 0 0 2 2 2 0 ArgK protein SbcCD_C PF13558.1 gi|119718985|ref|YP_919480.1| - 0.15 11.9 0.1 3.2 7.7 0.0 2.9 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit SRPRB PF09439.5 gi|119718985|ref|YP_919480.1| - 0.16 11.1 0.1 12 5.0 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DAP3 PF10236.4 gi|119718985|ref|YP_919480.1| - 0.2 10.5 0.9 2.2 7.1 0.1 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 NB-ARC PF00931.17 gi|119718985|ref|YP_919480.1| - 0.2 10.4 0.3 3.6 6.3 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Pox_A32 PF04665.7 gi|119718985|ref|YP_919480.1| - 0.23 10.7 0.3 17 4.5 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein TrwB_AAD_bind PF10412.4 gi|119718985|ref|YP_919480.1| - 0.24 9.9 0.1 16 3.9 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ABC_cobalt PF09819.4 gi|119718986|ref|YP_919481.1| - 4.6e-35 120.3 13.1 4.6e-35 120.3 9.0 1.9 1 1 1 2 2 2 1 ABC-type cobalt transport system, permease component DUF4341 PF14241.1 gi|119718986|ref|YP_919481.1| - 2.7 7.7 12.3 2.2 8.0 0.1 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4341) Aldolase_2 PF10120.4 gi|119718987|ref|YP_919482.1| - 2.1e-46 157.4 0.1 2.8e-46 156.9 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|119718987|ref|YP_919482.1| - 2e-05 24.3 0.2 4.9e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|119718987|ref|YP_919482.1| - 0.00012 21.8 0.1 0.00025 20.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|119718987|ref|YP_919482.1| - 0.0018 17.8 0.2 0.0047 16.5 0.1 1.6 1 0 0 1 1 1 1 MarR family LacI PF00356.16 gi|119718987|ref|YP_919482.1| - 0.003 17.1 0.3 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_23 PF13384.1 gi|119718987|ref|YP_919482.1| - 0.005 16.4 0.1 0.03 13.9 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_19 PF12844.2 gi|119718987|ref|YP_919482.1| - 0.0057 16.6 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|119718987|ref|YP_919482.1| - 0.0069 15.9 0.2 0.0069 15.9 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|119718987|ref|YP_919482.1| - 0.0095 15.7 0.1 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|119718987|ref|YP_919482.1| - 0.0096 15.2 0.2 0.023 14.1 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|119718987|ref|YP_919482.1| - 0.015 15.4 0.1 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|119718987|ref|YP_919482.1| - 0.086 13.0 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|119718987|ref|YP_919482.1| - 0.1 12.3 0.1 0.32 10.6 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Cro PF09048.5 gi|119718987|ref|YP_919482.1| - 0.11 12.1 0.1 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Cro MarR PF01047.17 gi|119718987|ref|YP_919482.1| - 0.14 11.8 0.1 0.33 10.6 0.1 1.6 1 0 0 1 1 1 0 MarR family Regulator_TrmB PF11495.3 gi|119718988|ref|YP_919483.1| - 2.3e-58 196.9 0.3 2.8e-58 196.6 0.2 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|119718988|ref|YP_919483.1| - 9.5e-16 57.2 0.1 1.9e-15 56.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|119718988|ref|YP_919483.1| - 0.00044 19.8 0.0 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|119718988|ref|YP_919483.1| - 0.013 15.0 0.1 2.1 8.0 0.0 3.2 3 0 0 3 3 3 0 HTH domain B12-binding PF02310.14 gi|119718989|ref|YP_919484.1| - 4.3e-15 55.6 0.0 1.7e-14 53.7 0.0 1.9 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.16 gi|119718989|ref|YP_919484.1| - 1.4e-13 51.3 0.1 1.3e-11 44.9 0.0 2.8 3 0 0 3 3 3 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|119718991|ref|YP_919486.1| - 1.9e-15 57.4 0.1 5.7e-15 55.8 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|119718991|ref|YP_919486.1| - 5.2e-09 36.3 0.0 9.6e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|119718991|ref|YP_919486.1| - 5.2e-08 32.9 0.0 9.9e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Prok-RING_2 PF14445.1 gi|119718991|ref|YP_919486.1| - 0.45 10.4 5.8 0.072 13.0 0.9 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 2 LEA_2 PF03168.8 gi|119718992|ref|YP_919487.1| - 0.021 15.1 0.0 0.046 14.1 0.0 1.5 1 0 0 1 1 1 0 Late embryogenesis abundant protein UPF0180 PF03698.8 gi|119718993|ref|YP_919488.1| - 0.04 13.7 0.1 0.057 13.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) YbjN PF10722.4 gi|119718993|ref|YP_919488.1| - 0.06 13.3 0.0 0.067 13.2 0.0 1.1 1 0 0 1 1 1 0 Putative bacterial sensory transduction regulator YcfA PF07927.7 gi|119718993|ref|YP_919488.1| - 0.11 12.4 0.1 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 YcfA-like protein PepSY_2 PF13670.1 gi|119718993|ref|YP_919488.1| - 0.18 11.7 0.4 0.25 11.2 0.3 1.2 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain NAD_binding_2 PF03446.10 gi|119718994|ref|YP_919489.1| - 1.5e-33 115.9 0.0 2.1e-33 115.4 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|119718994|ref|YP_919489.1| - 7e-13 48.7 0.0 1.3e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|119718994|ref|YP_919489.1| - 5.4e-11 42.7 0.0 2e-10 40.9 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|119718994|ref|YP_919489.1| - 1.1e-06 27.8 0.0 1.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|119718994|ref|YP_919489.1| - 7.8e-05 22.7 0.0 0.00015 21.8 0.0 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_3 PF03447.11 gi|119718994|ref|YP_919489.1| - 0.00013 22.3 0.0 0.0003 21.1 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ApbA PF02558.11 gi|119718994|ref|YP_919489.1| - 0.00041 19.8 0.0 0.00079 18.8 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|119718994|ref|YP_919489.1| - 0.0009 18.6 0.1 0.42 9.9 0.0 2.4 1 1 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.20 gi|119718994|ref|YP_919489.1| - 0.0011 18.9 0.1 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|119718994|ref|YP_919489.1| - 0.0035 17.5 0.2 0.0069 16.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain GFO_IDH_MocA PF01408.17 gi|119718994|ref|YP_919489.1| - 0.0043 17.5 0.0 0.0077 16.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|119718994|ref|YP_919489.1| - 0.0073 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|119718994|ref|YP_919489.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.4 gi|119718994|ref|YP_919489.1| - 0.012 15.3 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Rossmann-like domain TrkA_N PF02254.13 gi|119718994|ref|YP_919489.1| - 0.013 15.5 0.0 0.084 12.8 0.0 2.1 1 1 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|119718994|ref|YP_919489.1| - 0.02 14.5 0.0 0.049 13.2 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YjbR PF04237.8 gi|119718997|ref|YP_919492.1| - 0.0071 16.6 0.0 7 7.0 0.0 2.6 2 1 0 2 2 2 2 YjbR Ras PF00071.17 gi|119718998|ref|YP_919493.1| - 2.1e-38 131.2 0.0 2.4e-38 131.0 0.0 1.0 1 0 0 1 1 1 1 Ras family Miro PF08477.8 gi|119718998|ref|YP_919493.1| - 8.6e-16 58.5 0.0 1.1e-15 58.1 0.0 1.1 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|119718998|ref|YP_919493.1| - 2e-09 36.9 0.0 2.4e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family Gtr1_RagA PF04670.7 gi|119718998|ref|YP_919493.1| - 1.1e-07 31.3 0.0 1.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region MMR_HSR1 PF01926.18 gi|119718998|ref|YP_919493.1| - 0.0029 17.5 0.0 0.004 17.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|119718998|ref|YP_919493.1| - 0.0067 17.2 0.1 0.0093 16.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|119718998|ref|YP_919493.1| - 0.012 15.7 0.0 0.03 14.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|119718998|ref|YP_919493.1| - 0.016 15.4 0.0 0.025 14.7 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|119718998|ref|YP_919493.1| - 0.029 14.1 0.0 0.057 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|119718998|ref|YP_919493.1| - 0.063 13.1 0.0 0.17 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119718998|ref|YP_919493.1| - 0.089 13.1 0.0 0.14 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|119718998|ref|YP_919493.1| - 0.11 12.1 0.2 0.18 11.3 0.2 1.4 1 0 0 1 1 1 0 AAA domain Aminotran_1_2 PF00155.16 gi|119718999|ref|YP_919494.1| - 8.3e-75 251.9 0.0 9.4e-75 251.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|119718999|ref|YP_919494.1| - 4.8e-09 35.7 0.0 7.8e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|119718999|ref|YP_919494.1| - 9.9e-07 27.8 0.0 1.8e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|119718999|ref|YP_919494.1| - 2.4e-06 26.1 0.0 3.6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|119718999|ref|YP_919494.1| - 8.8e-05 21.7 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|119718999|ref|YP_919494.1| - 0.035 12.6 0.0 0.047 12.2 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain SIS PF01380.17 gi|119719003|ref|YP_919498.1| - 6.1e-48 161.7 0.2 4.4e-26 91.0 0.6 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|119719003|ref|YP_919498.1| - 1.4e-25 89.7 0.0 3.5e-25 88.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|119719003|ref|YP_919498.1| - 3.3e-23 81.9 0.4 1.3e-17 63.5 0.0 2.7 2 1 0 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|119719003|ref|YP_919498.1| - 2.9e-20 72.2 0.0 1e-19 70.4 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|119719003|ref|YP_919498.1| - 0.00016 21.3 0.0 0.00098 18.8 0.0 2.1 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.1 gi|119719003|ref|YP_919498.1| - 0.00057 18.6 0.0 0.00092 17.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Hexapep PF00132.19 gi|119719004|ref|YP_919499.1| - 8.2e-14 50.3 1.5 0.00015 21.0 0.0 4.2 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|119719004|ref|YP_919499.1| - 2.7e-06 27.5 0.0 5.4e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|119719004|ref|YP_919499.1| - 0.0036 16.8 0.4 0.11 12.0 0.0 3.0 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase NTP_transferase PF00483.18 gi|119719004|ref|YP_919499.1| - 0.0052 16.1 0.0 0.0068 15.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|119719004|ref|YP_919499.1| - 0.037 13.7 0.0 0.079 12.6 0.0 1.5 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|119719005|ref|YP_919500.1| - 7.2e-23 81.5 0.7 1.4e-22 80.5 0.5 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|119719005|ref|YP_919500.1| - 4.5e-19 68.7 0.1 7.2e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|119719005|ref|YP_919500.1| - 1.2e-14 54.4 9.5 4.2e-14 52.7 6.6 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|119719005|ref|YP_919500.1| - 1.3e-09 37.6 0.0 2.1e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|119719005|ref|YP_919500.1| - 2e-06 27.0 0.1 3.1e-06 26.4 0.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|119719005|ref|YP_919500.1| - 0.00015 21.0 0.0 0.0003 20.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family Cas6 PF09559.5 gi|119719006|ref|YP_919501.1| - 0.013 15.2 0.5 0.02 14.6 0.3 1.5 1 1 0 1 1 1 0 Cas6 Crispr DNA_ligase_ZBD PF03119.11 gi|119719007|ref|YP_919502.1| - 0.0026 17.4 0.1 0.0095 15.6 0.0 2.0 3 0 0 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.14 gi|119719007|ref|YP_919502.1| - 0.003 17.2 0.5 0.0033 17.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|119719007|ref|YP_919502.1| - 0.0037 16.4 2.5 0.011 14.8 0.4 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|119719007|ref|YP_919502.1| - 0.0068 16.3 1.0 0.15 12.0 0.7 2.1 1 1 1 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|119719007|ref|YP_919502.1| - 0.009 15.8 2.4 0.019 14.7 1.7 1.5 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|119719007|ref|YP_919502.1| - 0.0095 15.6 1.7 2.3 7.9 0.1 2.1 2 0 0 2 2 2 2 Nudix N-terminal UPF0547 PF10571.4 gi|119719007|ref|YP_919502.1| - 0.0095 15.6 0.8 0.086 12.5 0.0 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|119719007|ref|YP_919502.1| - 0.012 15.0 3.0 0.08 12.4 2.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|119719007|ref|YP_919502.1| - 0.018 14.8 1.4 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|119719007|ref|YP_919502.1| - 0.032 14.3 1.1 0.95 9.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase GFA PF04828.9 gi|119719007|ref|YP_919502.1| - 0.036 14.0 2.9 0.17 11.8 2.0 1.8 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-RING_3 PF14369.1 gi|119719007|ref|YP_919502.1| - 0.047 13.6 0.3 0.096 12.6 0.2 1.5 1 1 0 1 1 1 0 zinc-finger zf-B_box PF00643.19 gi|119719007|ref|YP_919502.1| - 0.073 12.9 0.8 1.8 8.5 0.1 2.1 2 0 0 2 2 2 0 B-box zinc finger DUF329 PF03884.9 gi|119719007|ref|YP_919502.1| - 0.076 12.5 2.6 4 7.0 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zinc-ribbons_6 PF07191.7 gi|119719007|ref|YP_919502.1| - 0.11 12.2 1.6 0.21 11.4 1.0 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-LITAF-like PF10601.4 gi|119719007|ref|YP_919502.1| - 0.11 12.3 1.2 7.4 6.5 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|119719007|ref|YP_919502.1| - 0.12 12.0 3.1 1 9.0 1.9 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Apc11 PF12861.2 gi|119719007|ref|YP_919502.1| - 0.13 12.0 2.0 0.44 10.4 1.4 1.8 1 1 0 1 1 1 0 Anaphase-promoting complex subunit 11 RING-H2 finger Arif-1 PF06770.6 gi|119719007|ref|YP_919502.1| - 0.14 11.4 0.5 0.14 11.4 0.4 1.2 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) C1_1 PF00130.17 gi|119719007|ref|YP_919502.1| - 0.16 11.6 1.5 0.89 9.3 1.1 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2072 PF09845.4 gi|119719007|ref|YP_919502.1| - 0.21 11.5 1.3 0.39 10.6 0.9 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DNA_RNApol_7kD PF03604.8 gi|119719007|ref|YP_919502.1| - 0.21 11.0 3.2 1.9 8.0 0.2 2.3 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.7 gi|119719007|ref|YP_919502.1| - 0.23 11.6 1.6 0.28 11.3 1.1 1.1 1 0 0 1 1 1 0 CHY zinc finger Prok-RING_1 PF14446.1 gi|119719007|ref|YP_919502.1| - 0.24 11.1 1.8 10 5.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|119719007|ref|YP_919502.1| - 0.28 11.0 2.9 0.42 10.5 2.0 1.3 1 1 0 1 1 1 0 IBR domain Sgf11 PF08209.6 gi|119719007|ref|YP_919502.1| - 0.29 10.4 2.3 2.8 7.3 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-HYPF PF07503.7 gi|119719007|ref|YP_919502.1| - 0.35 10.3 3.2 1.2 8.6 2.2 1.8 1 1 0 1 1 1 0 HypF finger TerY-C PF15616.1 gi|119719007|ref|YP_919502.1| - 0.36 10.7 3.3 9.1 6.2 0.1 1.9 1 1 0 1 1 1 0 TerY-C metal binding domain DUF1272 PF06906.6 gi|119719007|ref|YP_919502.1| - 0.64 9.9 3.9 2.4 8.0 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF4451 PF14616.1 gi|119719007|ref|YP_919502.1| - 0.65 9.7 3.3 12 5.6 2.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4451) DUF1610 PF07754.6 gi|119719007|ref|YP_919502.1| - 0.71 10.0 6.6 0.86 9.7 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ribosomal_L32p PF01783.18 gi|119719007|ref|YP_919502.1| - 2.4 8.3 4.9 51 4.1 3.4 2.0 1 1 0 1 1 1 0 Ribosomal L32p protein family HTH_3 PF01381.17 gi|119719008|ref|YP_919503.1| - 1.6e-09 37.4 0.6 2.4e-09 36.8 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.1 gi|119719008|ref|YP_919503.1| - 3.1e-08 32.8 0.8 9.8e-08 31.2 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|119719008|ref|YP_919503.1| - 1e-06 28.4 0.0 2.2e-06 27.3 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|119719008|ref|YP_919503.1| - 2.5e-06 26.9 0.1 2.4e-05 23.7 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|119719008|ref|YP_919503.1| - 2.7e-06 27.4 0.1 5.5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|119719008|ref|YP_919503.1| - 7.9e-06 25.3 0.2 2.1e-05 24.0 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain HTH_19 PF12844.2 gi|119719008|ref|YP_919503.1| - 2.1e-05 24.5 0.2 5.4e-05 23.1 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|119719008|ref|YP_919503.1| - 2.3e-05 23.9 1.2 0.00011 21.7 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Tnp_4 PF13613.1 gi|119719008|ref|YP_919503.1| - 3.5e-05 23.2 0.1 6.9e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4 PF04545.11 gi|119719008|ref|YP_919503.1| - 4.7e-05 22.6 0.1 0.00012 21.2 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|119719008|ref|YP_919503.1| - 0.00029 20.2 0.1 0.00072 18.9 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|119719008|ref|YP_919503.1| - 0.00033 20.2 0.1 0.00067 19.2 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|119719008|ref|YP_919503.1| - 0.0004 20.0 0.0 0.00067 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|119719008|ref|YP_919503.1| - 0.00045 19.9 0.0 0.00096 18.8 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LacI PF00356.16 gi|119719008|ref|YP_919503.1| - 0.00086 18.8 0.2 0.0072 15.9 0.0 2.3 2 1 0 2 2 1 1 Bacterial regulatory proteins, lacI family HTH_20 PF12840.2 gi|119719008|ref|YP_919503.1| - 0.0013 18.4 0.0 0.0049 16.6 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|119719008|ref|YP_919503.1| - 0.0015 18.1 0.0 0.0035 16.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_7 PF02796.10 gi|119719008|ref|YP_919503.1| - 0.0029 17.4 0.1 0.0052 16.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|119719008|ref|YP_919503.1| - 0.0037 17.2 0.1 0.0073 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|119719008|ref|YP_919503.1| - 0.0043 17.2 0.1 0.042 14.0 0.0 2.3 2 1 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_29 PF13551.1 gi|119719008|ref|YP_919503.1| - 0.019 15.0 0.0 0.025 14.7 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix KorB PF08535.5 gi|119719008|ref|YP_919503.1| - 0.029 14.5 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 KorB domain DUF134 PF02001.11 gi|119719008|ref|YP_919503.1| - 0.033 14.0 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_Tnp_ISL3 PF13542.1 gi|119719008|ref|YP_919503.1| - 0.037 13.2 0.0 0.091 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.14 gi|119719008|ref|YP_919503.1| - 0.04 13.2 0.0 0.1 11.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_10 PF04967.7 gi|119719008|ref|YP_919503.1| - 0.042 13.4 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_17 PF12728.2 gi|119719008|ref|YP_919503.1| - 0.042 14.1 0.0 0.14 12.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain Cro PF09048.5 gi|119719008|ref|YP_919503.1| - 0.061 12.9 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 Cro HTH_11 PF08279.7 gi|119719008|ref|YP_919503.1| - 0.073 12.7 0.2 0.16 11.6 0.1 1.6 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|119719008|ref|YP_919503.1| - 0.077 12.7 0.1 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.22 gi|119719008|ref|YP_919503.1| - 0.09 12.5 0.1 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_ECF PF07638.6 gi|119719008|ref|YP_919503.1| - 0.097 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor DUF1670 PF07900.6 gi|119719008|ref|YP_919503.1| - 0.12 11.6 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_22 PF13309.1 gi|119719008|ref|YP_919503.1| - 0.14 11.9 0.1 0.48 10.2 0.1 2.0 1 1 0 1 1 1 0 HTH domain UbiD PF01977.11 gi|119719009|ref|YP_919504.1| - 4e-45 153.9 0.0 4.8e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF2153 PF09921.4 gi|119719010|ref|YP_919505.1| - 2.8e-55 185.3 1.5 3.2e-55 185.1 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Glycos_trans_3N PF02885.12 gi|119719011|ref|YP_919506.1| - 5.8e-17 61.0 0.1 1.8e-16 59.4 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.8 gi|119719011|ref|YP_919506.1| - 9.1e-15 53.8 0.1 3.5e-14 52.0 0.0 2.0 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|119719011|ref|YP_919506.1| - 7.9e-14 51.6 0.4 3.3e-12 46.3 0.1 2.7 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain CDC48_N PF02359.13 gi|119719011|ref|YP_919506.1| - 0.00055 19.8 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain HlyD_3 PF13437.1 gi|119719011|ref|YP_919506.1| - 0.0029 17.9 0.2 4.2 7.7 0.0 3.1 2 1 0 2 2 2 1 HlyD family secretion protein DUF2254 PF10011.4 gi|119719011|ref|YP_919506.1| - 0.0046 15.4 0.0 0.0076 14.7 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF2774 PF11242.3 gi|119719011|ref|YP_919506.1| - 0.0057 16.6 0.0 8.3 6.4 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF2774) Antitoxin-MazE PF04014.13 gi|119719011|ref|YP_919506.1| - 0.0072 16.0 0.2 0.97 9.2 0.0 3.7 4 0 0 4 4 3 1 Antidote-toxin recognition MazE HlyD_2 PF12700.2 gi|119719011|ref|YP_919506.1| - 0.029 13.5 0.4 0.25 10.4 0.0 2.3 2 1 0 2 2 2 0 HlyD family secretion protein CPSase_L_chain PF00289.17 gi|119719011|ref|YP_919506.1| - 0.044 13.8 0.1 2.8 8.0 0.0 2.5 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain MacB_PCD PF12704.2 gi|119719011|ref|YP_919506.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 MacB-like periplasmic core domain DUF2118 PF09891.4 gi|119719011|ref|YP_919506.1| - 0.097 12.3 0.2 3.6 7.2 0.0 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) Molydop_binding PF01568.16 gi|119719011|ref|YP_919506.1| - 0.1 12.3 0.3 0.63 9.8 0.1 2.1 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain AFOR_C PF01314.13 gi|119719012|ref|YP_919507.1| - 5.6e-110 367.6 0.0 6.7e-110 367.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|119719012|ref|YP_919507.1| - 1.1e-73 246.8 0.0 1.7e-73 246.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|119719013|ref|YP_919508.1| - 2.5e-06 27.8 0.1 2.9e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|119719013|ref|YP_919508.1| - 0.051 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin CxxCxxCC PF03692.10 gi|119719015|ref|YP_919510.1| - 1.2e-16 60.9 0.9 1.5e-16 60.6 0.6 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|119719015|ref|YP_919510.1| - 0.039 13.4 0.7 0.075 12.5 0.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) CTP-dep_RFKase PF01982.11 gi|119719016|ref|YP_919511.1| - 1e-37 128.4 0.0 1.6e-37 127.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HARE-HTH PF05066.8 gi|119719016|ref|YP_919511.1| - 0.014 15.7 0.0 0.034 14.4 0.0 1.6 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain DUF3116 PF11313.3 gi|119719016|ref|YP_919511.1| - 0.017 14.6 0.0 0.043 13.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) MarR_2 PF12802.2 gi|119719016|ref|YP_919511.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|119719016|ref|YP_919511.1| - 0.044 13.6 0.0 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2231 PF09990.4 gi|119719017|ref|YP_919512.1| - 0.16 12.3 3.0 0.41 11.0 2.1 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2231) Peptidase_M54 PF07998.6 gi|119719018|ref|YP_919513.1| - 9.5e-28 97.2 0.0 1.2e-27 97.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M66 PF10462.4 gi|119719018|ref|YP_919513.1| - 0.0017 17.2 0.0 0.0026 16.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.3 gi|119719018|ref|YP_919513.1| - 0.0033 15.9 0.3 0.0049 15.3 0.2 1.2 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_2 PF13574.1 gi|119719018|ref|YP_919513.1| - 0.0068 16.4 0.0 0.0083 16.1 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|119719018|ref|YP_919513.1| - 0.0093 15.6 0.0 0.0093 15.6 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|119719018|ref|YP_919513.1| - 0.013 16.0 0.0 0.019 15.5 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|119719018|ref|YP_919513.1| - 0.16 11.8 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 5-FTHF_cyc-lig PF01812.15 gi|119719019|ref|YP_919514.1| - 1.6e-24 86.6 0.0 2.1e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family RHH_1 PF01402.16 gi|119719020|ref|YP_919515.1| - 2e-07 30.5 0.0 3.8e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family TFIIA_gamma_N PF02268.11 gi|119719020|ref|YP_919515.1| - 0.083 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain tRNA_bind PF01588.15 gi|119719021|ref|YP_919516.1| - 2.5e-30 104.1 0.1 2.9e-30 103.9 0.1 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain HTH_27 PF13463.1 gi|119719022|ref|YP_919517.1| - 7.8e-06 26.1 0.0 1.2e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|119719022|ref|YP_919517.1| - 5.5e-05 22.9 0.1 7.3e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|119719022|ref|YP_919517.1| - 8.2e-05 22.1 0.1 0.00011 21.7 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|119719022|ref|YP_919517.1| - 9.5e-05 22.0 0.0 0.00016 21.2 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|119719022|ref|YP_919517.1| - 0.00033 20.2 0.3 0.0014 18.2 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|119719022|ref|YP_919517.1| - 0.00062 19.5 0.0 0.007 16.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.9 gi|119719022|ref|YP_919517.1| - 0.0018 17.9 0.0 0.003 17.2 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|119719022|ref|YP_919517.1| - 0.02 14.5 1.1 0.04 13.5 0.3 1.9 1 1 1 2 2 2 0 HTH domain HTH_34 PF13601.1 gi|119719022|ref|YP_919517.1| - 0.027 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|119719022|ref|YP_919517.1| - 0.062 12.9 0.0 0.15 11.7 0.0 1.6 1 1 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|119719022|ref|YP_919517.1| - 0.084 12.4 0.0 0.55 9.8 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|119719022|ref|YP_919517.1| - 1.7 8.1 5.5 0.8 9.1 0.3 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Isochorismatase PF00857.15 gi|119719023|ref|YP_919518.1| - 6.7e-48 162.9 0.0 7.6e-48 162.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AAA_25 PF13481.1 gi|119719023|ref|YP_919518.1| - 0.00057 19.3 0.1 0.0013 18.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain Phage_integrase PF00589.17 gi|119719024|ref|YP_919519.1| - 2.1e-50 170.7 0.7 3e-50 170.2 0.5 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|119719024|ref|YP_919519.1| - 3.1e-10 40.0 1.2 2e-09 37.4 0.1 2.5 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|119719024|ref|YP_919519.1| - 2.8e-07 30.7 0.5 1.7e-06 28.2 0.1 2.5 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|119719024|ref|YP_919519.1| - 0.00081 19.1 0.2 0.0015 18.3 0.1 1.5 1 0 0 1 1 1 1 Integrase DUF3435 PF11917.3 gi|119719024|ref|YP_919519.1| - 0.0036 16.0 0.2 0.012 14.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3435) HTH_23 PF13384.1 gi|119719024|ref|YP_919519.1| - 0.15 11.7 2.0 1.3 8.7 0.0 3.3 3 1 0 4 4 4 0 Homeodomain-like domain DNase-RNase PF02577.9 gi|119719025|ref|YP_919520.1| - 1.5e-36 124.6 0.0 1.9e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease Cas_Cas6 PF01881.11 gi|119719025|ref|YP_919520.1| - 0.1 12.8 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 CRISPR associated protein Cas6 ATP-grasp_5 PF13549.1 gi|119719027|ref|YP_919522.1| - 3e-66 222.8 0.0 3.4e-66 222.6 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|119719027|ref|YP_919522.1| - 0.043 13.5 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain DegT_DnrJ_EryC1 PF01041.12 gi|119719028|ref|YP_919523.1| - 1.2e-115 386.4 0.0 1.4e-115 386.2 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|119719028|ref|YP_919523.1| - 8.7e-08 31.6 0.0 1.9e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|119719028|ref|YP_919523.1| - 2.2e-06 26.7 0.0 3.2e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|119719028|ref|YP_919523.1| - 7.8e-05 21.1 0.0 0.00013 20.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|119719028|ref|YP_919523.1| - 0.00024 20.1 0.0 0.00047 19.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II NIL PF09383.5 gi|119719028|ref|YP_919523.1| - 0.028 13.9 0.1 0.07 12.7 0.0 1.7 2 0 0 2 2 2 0 NIL domain HD PF01966.17 gi|119719029|ref|YP_919524.1| - 3.6e-05 23.7 0.3 7.1e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 HD domain Enolase_C PF00113.17 gi|119719030|ref|YP_919525.1| - 1.1e-123 411.9 0.0 1.5e-123 411.5 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|119719030|ref|YP_919525.1| - 2e-56 189.5 0.0 3.6e-56 188.7 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|119719030|ref|YP_919525.1| - 2.4e-05 24.7 0.0 5.4e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|119719030|ref|YP_919525.1| - 2.6e-05 24.1 0.1 7.4e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|119719030|ref|YP_919525.1| - 0.034 13.0 0.1 0.077 11.9 0.0 1.6 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus NTP_transferase PF00483.18 gi|119719031|ref|YP_919526.1| - 1e-24 87.2 0.0 1.2e-24 86.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|119719031|ref|YP_919526.1| - 7.3e-11 42.3 0.0 9.6e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain FAD_binding_3 PF01494.14 gi|119719032|ref|YP_919527.1| - 1e-12 47.7 0.0 5.7e-09 35.4 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|119719032|ref|YP_919527.1| - 6.4e-05 22.0 0.0 0.026 13.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|119719032|ref|YP_919527.1| - 0.0002 21.3 0.0 0.00028 20.8 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|119719032|ref|YP_919527.1| - 0.0016 17.4 0.1 0.014 14.3 0.0 2.1 1 1 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|119719032|ref|YP_919527.1| - 0.069 12.9 0.7 7.5 6.3 0.3 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|119719032|ref|YP_919527.1| - 0.083 12.0 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|119719032|ref|YP_919527.1| - 0.13 12.2 0.1 1.4 8.8 0.1 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PadR PF03551.9 gi|119719033|ref|YP_919528.1| - 3.4e-15 55.5 0.1 4.6e-15 55.1 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|119719033|ref|YP_919528.1| - 0.00036 20.1 0.1 0.0013 18.3 0.1 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|119719033|ref|YP_919528.1| - 0.00047 19.9 0.0 0.0013 18.5 0.0 1.6 1 1 1 2 2 2 1 Winged helix-turn-helix DUF2513 PF10711.4 gi|119719033|ref|YP_919528.1| - 0.0062 16.5 0.0 0.0083 16.1 0.0 1.3 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) HxlR PF01638.12 gi|119719033|ref|YP_919528.1| - 0.033 13.8 0.1 0.052 13.1 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|119719033|ref|YP_919528.1| - 0.034 13.8 0.0 0.22 11.2 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF3116 PF11313.3 gi|119719033|ref|YP_919528.1| - 0.041 13.4 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HTH_34 PF13601.1 gi|119719033|ref|YP_919528.1| - 0.076 13.0 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|119719033|ref|YP_919528.1| - 0.092 13.0 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|119719033|ref|YP_919528.1| - 0.1 11.9 0.0 0.21 10.9 0.0 1.6 1 1 0 1 1 1 0 CodY helix-turn-helix domain Methyltransf_11 PF08241.7 gi|119719034|ref|YP_919529.1| - 1.2e-08 35.2 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|119719034|ref|YP_919529.1| - 8.1e-07 28.3 0.0 5.2e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|119719034|ref|YP_919529.1| - 6.1e-05 22.8 0.0 7.6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719034|ref|YP_919529.1| - 0.00023 21.7 0.0 0.00029 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|119719034|ref|YP_919529.1| - 0.00036 19.3 0.0 0.00044 19.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_31 PF13847.1 gi|119719034|ref|YP_919529.1| - 0.00063 19.3 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119719034|ref|YP_919529.1| - 0.0031 16.9 0.0 0.0047 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|119719034|ref|YP_919529.1| - 0.013 14.6 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|119719034|ref|YP_919529.1| - 0.013 15.4 0.0 0.016 15.2 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|119719034|ref|YP_919529.1| - 0.021 14.1 0.0 0.029 13.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|119719034|ref|YP_919529.1| - 0.026 15.0 0.0 0.04 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119719034|ref|YP_919529.1| - 0.16 12.3 0.0 0.24 11.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain polyprenyl_synt PF00348.12 gi|119719035|ref|YP_919530.1| - 4.7e-34 117.4 0.0 6.9e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase TatD_DNase PF01026.16 gi|119719036|ref|YP_919531.1| - 6.2e-61 205.8 0.0 7.1e-61 205.6 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|119719036|ref|YP_919531.1| - 5.9e-06 26.0 0.0 0.0024 17.5 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|119719036|ref|YP_919531.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase family CPSase_L_D2 PF02786.12 gi|119719037|ref|YP_919532.1| - 3.5e-70 235.5 0.0 4.6e-70 235.1 0.0 1.1 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|119719037|ref|YP_919532.1| - 1.7e-40 137.5 0.0 3.8e-40 136.4 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|119719037|ref|YP_919532.1| - 3.6e-36 123.4 0.0 6.5e-36 122.5 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|119719037|ref|YP_919532.1| - 1.5e-19 70.4 0.2 2.9e-19 69.5 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|119719037|ref|YP_919532.1| - 5e-13 48.5 0.0 2e-12 46.5 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|119719037|ref|YP_919532.1| - 8.6e-12 44.8 0.0 1.4e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|119719037|ref|YP_919532.1| - 8.7e-10 38.3 0.0 1.6e-09 37.5 0.0 1.4 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|119719037|ref|YP_919532.1| - 2.9e-07 30.0 0.0 4.5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|119719037|ref|YP_919532.1| - 4.7e-06 26.5 0.0 1e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Amidohydro_2 PF04909.9 gi|119719037|ref|YP_919532.1| - 0.011 15.3 0.1 0.032 13.7 0.0 1.8 2 0 0 2 2 2 0 Amidohydrolase ATP-grasp_5 PF13549.1 gi|119719037|ref|YP_919532.1| - 0.066 12.4 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Spermine_synth PF01564.12 gi|119719038|ref|YP_919533.1| - 1e-65 221.1 0.0 1.7e-65 220.3 0.0 1.4 1 1 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|119719038|ref|YP_919533.1| - 1.3e-07 32.1 0.0 2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|119719038|ref|YP_919533.1| - 2.3e-06 27.6 0.0 4.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|119719038|ref|YP_919533.1| - 1.7e-05 23.9 0.0 2.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_30 PF05430.6 gi|119719038|ref|YP_919533.1| - 3.5e-05 23.4 0.0 8.1e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_31 PF13847.1 gi|119719038|ref|YP_919533.1| - 5.4e-05 22.8 0.0 7.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119719038|ref|YP_919533.1| - 0.00015 22.2 0.0 0.00032 21.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119719038|ref|YP_919533.1| - 0.0024 18.2 0.0 0.0043 17.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|119719038|ref|YP_919533.1| - 0.014 15.1 0.0 0.031 14.0 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain TRM PF02005.11 gi|119719038|ref|YP_919533.1| - 0.04 12.8 0.0 0.097 11.5 0.0 1.6 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_24 PF13578.1 gi|119719038|ref|YP_919533.1| - 0.061 14.1 0.0 0.16 12.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|119719038|ref|YP_919533.1| - 0.14 11.4 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain TroA PF01297.12 gi|119719039|ref|YP_919534.1| - 1.9e-25 89.5 0.0 2.3e-25 89.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|119719040|ref|YP_919535.1| - 7.2e-26 91.1 0.0 9.8e-26 90.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119719040|ref|YP_919535.1| - 3.3e-16 60.0 0.2 1.8e-09 37.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|119719040|ref|YP_919535.1| - 5.1e-05 23.6 0.4 8e-05 23.0 0.3 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119719040|ref|YP_919535.1| - 9.6e-05 21.7 0.1 0.00085 18.6 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|119719040|ref|YP_919535.1| - 0.00016 20.8 0.0 0.031 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|119719040|ref|YP_919535.1| - 0.00093 19.2 0.2 0.0018 18.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|119719040|ref|YP_919535.1| - 0.00094 18.1 0.0 0.0015 17.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|119719040|ref|YP_919535.1| - 0.0018 17.7 0.2 0.0034 16.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|119719040|ref|YP_919535.1| - 0.0091 16.1 0.2 0.032 14.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|119719040|ref|YP_919535.1| - 0.0095 15.8 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|119719040|ref|YP_919535.1| - 0.01 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|119719040|ref|YP_919535.1| - 0.014 15.1 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|119719040|ref|YP_919535.1| - 0.015 15.0 1.2 0.023 14.4 0.1 1.8 2 0 0 2 2 1 0 Part of AAA domain AAA_22 PF13401.1 gi|119719040|ref|YP_919535.1| - 0.016 15.3 0.6 0.098 12.7 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|119719040|ref|YP_919535.1| - 0.05 13.3 0.1 0.48 10.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|119719040|ref|YP_919535.1| - 0.064 12.1 0.1 0.11 11.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|119719040|ref|YP_919535.1| - 0.072 13.4 0.1 1.4 9.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|119719040|ref|YP_919535.1| - 0.076 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.10 gi|119719040|ref|YP_919535.1| - 0.079 12.6 0.2 0.18 11.5 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.1 gi|119719040|ref|YP_919535.1| - 0.11 12.3 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|119719040|ref|YP_919535.1| - 0.12 12.0 0.3 0.2 11.2 0.2 1.3 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|119719040|ref|YP_919535.1| - 0.13 11.3 0.1 0.27 10.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|119719040|ref|YP_919535.1| - 0.14 11.5 0.1 0.21 11.0 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain ABC-3 PF00950.12 gi|119719041|ref|YP_919536.1| - 1.8e-28 99.5 25.9 2.1e-28 99.3 18.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|119719041|ref|YP_919536.1| - 4.6e-06 25.6 22.9 6.1e-06 25.2 15.8 1.2 1 0 0 1 1 1 1 FecCD transport family NikR_C PF08753.6 gi|119719042|ref|YP_919537.1| - 6.8e-06 25.8 0.0 1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|119719042|ref|YP_919537.1| - 0.00031 20.5 0.1 0.0009 19.0 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family TYW3 PF02676.9 gi|119719043|ref|YP_919538.1| - 6.4e-54 182.1 0.0 7.2e-54 182.0 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 PNP_UDP_1 PF01048.15 gi|119719044|ref|YP_919539.1| - 4.1e-37 127.3 1.0 4.6e-37 127.2 0.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Metallophos_2 PF12850.2 gi|119719045|ref|YP_919540.1| - 4.3e-10 39.6 0.0 1.7e-09 37.7 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|119719045|ref|YP_919540.1| - 0.046 13.1 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 Calcineurin-like phosphoesterase Peptidase_MA_2 PF13485.1 gi|119719046|ref|YP_919541.1| - 4.6e-13 49.3 0.2 9.1e-13 48.3 0.1 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily BSP PF04450.7 gi|119719046|ref|YP_919541.1| - 0.008 15.6 0.2 0.013 15.0 0.1 1.3 1 0 0 1 1 1 1 Peptidase of plants and bacteria DUF1570 PF07607.6 gi|119719046|ref|YP_919541.1| - 0.0087 16.0 0.2 0.018 15.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1570) Peptidase_M1 PF01433.15 gi|119719046|ref|YP_919541.1| - 0.012 14.7 0.1 0.022 13.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M1 Peptidase_M61 PF05299.7 gi|119719046|ref|YP_919541.1| - 0.071 13.0 0.4 0.28 11.1 0.3 1.9 1 1 0 1 1 1 0 M61 glycyl aminopeptidase HemY_N PF07219.8 gi|119719046|ref|YP_919541.1| - 0.14 11.7 0.3 0.39 10.2 0.2 1.7 1 0 0 1 1 1 0 HemY protein N-terminus DUF45 PF01863.12 gi|119719046|ref|YP_919541.1| - 0.17 11.6 0.0 0.31 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF45 Fer4_15 PF13459.1 gi|119719047|ref|YP_919542.1| - 8.5e-22 77.5 1.3 9.9e-22 77.2 0.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|119719047|ref|YP_919542.1| - 1e-20 73.8 0.8 1.3e-20 73.4 0.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|119719047|ref|YP_919542.1| - 2.7e-05 23.8 0.7 2.7e-05 23.8 0.5 2.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119719047|ref|YP_919542.1| - 0.00029 21.0 0.5 0.00047 20.3 0.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119719047|ref|YP_919542.1| - 0.00038 19.9 7.5 0.00055 19.4 0.5 2.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119719047|ref|YP_919542.1| - 0.00053 19.7 1.9 0.0016 18.1 1.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|119719047|ref|YP_919542.1| - 0.0013 18.4 1.0 0.0029 17.3 0.0 1.8 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Fer4_2 PF12797.2 gi|119719047|ref|YP_919542.1| - 0.0046 16.8 0.4 0.0046 16.8 0.3 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|119719047|ref|YP_919542.1| - 0.014 15.7 3.4 0.06 13.7 0.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain ComFB PF10719.4 gi|119719047|ref|YP_919542.1| - 0.037 13.7 0.2 0.31 10.8 0.2 2.0 2 0 0 2 2 2 0 Late competence development protein ComFB Fer4_11 PF13247.1 gi|119719047|ref|YP_919542.1| - 0.082 12.8 0.3 0.14 12.0 0.2 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719047|ref|YP_919542.1| - 0.18 11.8 2.5 0.66 10.0 0.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119719047|ref|YP_919542.1| - 0.28 11.0 4.7 0.26 11.1 0.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119719047|ref|YP_919542.1| - 0.81 10.1 0.2 0.81 10.1 0.1 2.1 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|119719047|ref|YP_919542.1| - 1.3 9.7 5.5 3.3 8.4 0.4 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain tRNA-synt_1 PF00133.17 gi|119719048|ref|YP_919543.1| - 8.2e-188 625.1 0.0 1e-187 624.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|119719048|ref|YP_919543.1| - 4e-32 111.0 0.0 7.5e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|119719048|ref|YP_919543.1| - 1.8e-20 72.9 0.0 1.1e-06 27.5 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|119719048|ref|YP_919543.1| - 0.00088 18.0 0.0 0.0095 14.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) DUF3315 PF11776.3 gi|119719048|ref|YP_919543.1| - 0.054 13.0 1.1 5 6.7 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3315) tRNA-synt_1_2 PF13603.1 gi|119719048|ref|YP_919543.1| - 0.065 12.5 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|119719048|ref|YP_919543.1| - 0.084 11.9 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Zn-ribbon_8 PF09723.5 gi|119719048|ref|YP_919543.1| - 0.14 12.1 2.9 0.27 11.2 0.1 2.9 3 0 0 3 3 3 0 Zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|119719048|ref|YP_919543.1| - 0.15 12.3 1.9 28 5.0 0.0 3.5 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain zf-IS66 PF13005.2 gi|119719048|ref|YP_919543.1| - 0.19 11.7 3.3 1.5 8.8 0.1 3.7 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Rpr2 PF04032.11 gi|119719048|ref|YP_919543.1| - 0.26 11.1 0.1 4.2 7.3 0.1 2.8 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-TFIIB PF13453.1 gi|119719048|ref|YP_919543.1| - 0.44 9.7 3.7 7.9 5.7 0.1 3.3 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.14 gi|119719048|ref|YP_919543.1| - 0.9 9.0 4.3 1.7 8.1 0.2 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF72 PF01904.13 gi|119719049|ref|YP_919544.1| - 9.6e-59 198.9 0.2 1.1e-58 198.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 NPCBM_assoc PF10633.4 gi|119719050|ref|YP_919545.1| - 2.8e-23 81.7 6.1 5.4e-09 35.9 0.1 4.6 4 0 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.1 gi|119719050|ref|YP_919545.1| - 3.3e-10 39.8 0.4 3.3e-10 39.8 0.3 4.6 4 1 0 5 5 5 1 Carboxypeptidase regulatory-like domain FixG_C PF11614.3 gi|119719050|ref|YP_919545.1| - 4e-09 36.6 0.1 0.1 12.7 0.0 5.3 2 1 4 6 6 6 3 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4480 PF13715.1 gi|119719050|ref|YP_919545.1| - 1.2e-07 31.6 3.3 2.9e-07 30.4 0.1 3.2 4 1 1 5 5 5 1 Domain of unknown function (DUF4480) DUF1034 PF06280.7 gi|119719050|ref|YP_919545.1| - 0.0006 20.2 0.2 0.69 10.3 0.0 4.1 3 1 0 3 3 3 1 Fn3-like domain (DUF1034) DUF11 PF01345.13 gi|119719050|ref|YP_919545.1| - 0.0057 16.6 2.2 0.0057 16.6 1.5 3.5 4 0 0 4 4 4 2 Domain of unknown function DUF11 PEGA PF08308.6 gi|119719050|ref|YP_919545.1| - 0.015 15.0 0.7 0.18 11.5 0.0 3.2 4 0 0 4 4 4 0 PEGA domain CARDB PF07705.6 gi|119719050|ref|YP_919545.1| - 0.035 14.1 2.3 3.9 7.5 0.1 3.8 3 1 0 3 3 3 0 CARDB Coatamer_beta_C PF07718.7 gi|119719050|ref|YP_919545.1| - 0.035 13.7 0.0 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 Coatomer beta C-terminal region Transglut_N PF00868.15 gi|119719050|ref|YP_919545.1| - 0.1 12.6 0.0 13 5.8 0.0 3.2 3 0 0 3 3 3 0 Transglutaminase family DsbD PF02683.10 gi|119719051|ref|YP_919546.1| - 8.2e-21 74.5 20.6 8.2e-21 74.5 14.3 2.7 2 1 0 3 3 3 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|119719051|ref|YP_919546.1| - 1.5e-13 51.0 24.0 1.5e-13 51.0 16.6 2.7 3 0 0 3 3 3 1 Cytochrome C biogenesis protein transmembrane region DUF2182 PF09948.4 gi|119719051|ref|YP_919546.1| - 0.0089 15.9 3.8 0.031 14.1 2.6 1.9 1 0 0 1 1 1 1 Predicted metal-binding integral membrane protein (DUF2182) TrmB PF01978.14 gi|119719052|ref|YP_919547.1| - 0.0017 18.0 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Glyco_hydro_57 PF03065.10 gi|119719053|ref|YP_919548.1| - 1.9e-71 240.8 0.0 5.2e-71 239.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|119719053|ref|YP_919548.1| - 0.0084 15.7 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide deacetylase Pyrophosphatase PF00719.14 gi|119719054|ref|YP_919549.1| - 2.9e-59 198.9 0.2 3.4e-59 198.7 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase GTP_EFTU PF00009.22 gi|119719055|ref|YP_919550.1| - 8.1e-22 77.5 0.0 1.3e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|119719055|ref|YP_919550.1| - 3.8e-13 49.4 0.0 7.1e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|119719055|ref|YP_919550.1| - 6.3e-08 32.6 0.8 4e-07 30.0 0.1 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|119719055|ref|YP_919550.1| - 0.053 13.4 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|119719055|ref|YP_919550.1| - 0.2 11.1 0.4 1.4 8.4 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF72 PF01904.13 gi|119719056|ref|YP_919551.1| - 1.9e-61 207.7 0.0 3.1e-61 207.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF72 SNAP PF14938.1 gi|119719056|ref|YP_919551.1| - 0.052 12.6 0.0 0.087 11.9 0.0 1.2 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP DUF429 PF04250.8 gi|119719057|ref|YP_919552.1| - 7.8e-34 116.7 0.0 9e-34 116.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) dUTPase PF00692.14 gi|119719058|ref|YP_919553.1| - 1.3e-14 53.7 0.0 2.1e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|119719058|ref|YP_919553.1| - 6.5e-07 28.0 0.0 1.3e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HhH-GPD PF00730.20 gi|119719059|ref|YP_919554.1| - 1.9e-15 57.0 0.0 2.7e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|119719059|ref|YP_919554.1| - 4.5e-05 23.4 7.1 9e-05 22.5 4.9 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|119719059|ref|YP_919554.1| - 0.0022 18.1 0.2 0.018 15.2 0.0 2.3 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|119719059|ref|YP_919554.1| - 0.03 14.0 0.0 0.13 12.0 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|119719059|ref|YP_919554.1| - 0.14 11.8 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) SurE PF01975.12 gi|119719060|ref|YP_919555.1| - 1.5e-36 125.5 0.0 1.9e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Pyr_redox_2 PF07992.9 gi|119719061|ref|YP_919556.1| - 9.3e-39 133.3 3.2 3.9e-38 131.3 2.2 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|119719061|ref|YP_919556.1| - 8.6e-23 80.5 2.9 9.5e-18 64.3 0.4 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|119719061|ref|YP_919556.1| - 4.8e-16 58.7 0.0 2e-15 56.7 0.0 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|119719061|ref|YP_919556.1| - 2.1e-13 50.8 0.0 1.6e-07 31.6 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|119719061|ref|YP_919556.1| - 1.3e-11 44.0 10.3 0.0019 17.1 0.1 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|119719061|ref|YP_919556.1| - 2.9e-10 39.2 2.3 0.00034 19.2 0.1 4.1 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.1 gi|119719061|ref|YP_919556.1| - 1.7e-09 37.5 1.8 0.0004 20.3 0.0 3.0 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|119719061|ref|YP_919556.1| - 1.5e-07 30.7 0.3 2.4e-05 23.5 0.0 2.3 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.1 gi|119719061|ref|YP_919556.1| - 1.2e-06 27.7 0.0 0.00019 20.4 0.0 2.6 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|119719061|ref|YP_919556.1| - 1.9e-06 27.7 2.0 0.016 14.9 0.0 3.7 4 0 0 4 4 4 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|119719061|ref|YP_919556.1| - 7.2e-06 25.1 0.5 0.041 12.7 0.0 2.5 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|119719061|ref|YP_919556.1| - 8.1e-06 24.9 6.3 0.00073 18.4 0.0 3.6 4 0 0 4 4 4 1 FAD binding domain Lycopene_cycl PF05834.7 gi|119719061|ref|YP_919556.1| - 1.4e-05 24.2 0.3 0.00066 18.6 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|119719061|ref|YP_919556.1| - 3.6e-05 22.9 1.4 0.12 11.4 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|119719061|ref|YP_919556.1| - 0.0011 18.1 3.9 0.06 12.4 0.1 3.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|119719061|ref|YP_919556.1| - 0.0021 17.7 0.5 0.0071 16.0 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|119719061|ref|YP_919556.1| - 0.0034 17.6 0.7 0.28 11.4 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|119719061|ref|YP_919556.1| - 0.0042 16.5 0.2 0.0093 15.3 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|119719061|ref|YP_919556.1| - 0.0068 15.9 1.0 2.8 7.4 0.0 2.7 3 0 0 3 3 2 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|119719061|ref|YP_919556.1| - 0.0085 14.7 0.9 0.1 11.1 0.0 2.5 3 0 0 3 3 3 1 Tryptophan halogenase ThiF PF00899.16 gi|119719061|ref|YP_919556.1| - 0.023 14.5 0.7 0.11 12.3 0.1 2.1 2 0 0 2 2 2 0 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|119719061|ref|YP_919556.1| - 0.026 14.2 0.2 2.9 7.5 0.0 2.5 3 0 0 3 3 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Mqo PF06039.10 gi|119719061|ref|YP_919556.1| - 0.03 12.5 0.0 0.044 11.9 0.0 1.2 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) NAD_binding_2 PF03446.10 gi|119719061|ref|YP_919556.1| - 0.038 13.8 0.1 0.68 9.7 0.0 2.3 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|119719061|ref|YP_919556.1| - 0.041 13.8 0.7 1.3 9.0 0.2 2.6 2 1 0 2 2 2 0 TrkA-N domain adh_short PF00106.20 gi|119719061|ref|YP_919556.1| - 0.076 12.9 0.7 0.17 11.8 0.5 1.6 1 0 0 1 1 1 0 short chain dehydrogenase F420_oxidored PF03807.12 gi|119719061|ref|YP_919556.1| - 0.094 13.1 0.0 3 8.3 0.0 2.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|119719061|ref|YP_919556.1| - 0.17 12.4 0.4 1.3 9.5 0.0 2.5 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ABC_tran PF00005.22 gi|119719063|ref|YP_919558.1| - 1.1e-29 103.5 0.0 1.4e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119719063|ref|YP_919558.1| - 2.1e-22 79.2 2.5 3.3e-22 78.6 1.7 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119719063|ref|YP_919558.1| - 2.1e-09 37.7 0.1 7.7e-05 22.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|119719063|ref|YP_919558.1| - 0.00048 18.7 0.4 0.003 16.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|119719063|ref|YP_919558.1| - 0.00052 20.1 1.4 0.008 16.3 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119719063|ref|YP_919558.1| - 0.00086 18.7 0.1 0.0016 17.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|119719063|ref|YP_919558.1| - 0.00098 19.1 0.0 0.002 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|119719063|ref|YP_919558.1| - 0.0044 16.2 0.2 0.17 11.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|119719063|ref|YP_919558.1| - 0.018 14.6 0.1 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|119719063|ref|YP_919558.1| - 0.065 12.4 0.0 0.099 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Gtr1_RagA PF04670.7 gi|119719063|ref|YP_919558.1| - 0.072 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region MobB PF03205.9 gi|119719063|ref|YP_919558.1| - 0.076 12.7 0.1 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|119719063|ref|YP_919558.1| - 0.085 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|119719063|ref|YP_919558.1| - 0.086 12.2 0.1 0.71 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_5 PF07728.9 gi|119719063|ref|YP_919558.1| - 0.091 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|119719063|ref|YP_919558.1| - 0.093 12.3 0.1 0.21 11.2 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|119719063|ref|YP_919558.1| - 0.11 12.7 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|119719063|ref|YP_919558.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain G-alpha PF00503.15 gi|119719063|ref|YP_919558.1| - 0.17 10.5 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.24 gi|119719063|ref|YP_919558.1| - 0.22 11.7 0.8 1.5 9.0 0.1 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|119719064|ref|YP_919559.1| - 5.7e-29 101.1 0.0 7.7e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119719064|ref|YP_919559.1| - 2.8e-20 72.4 1.3 5.7e-20 71.4 0.9 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119719064|ref|YP_919559.1| - 1.7e-11 44.6 0.8 1.2e-07 31.9 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119719064|ref|YP_919559.1| - 9.1e-07 29.0 0.0 1.3e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|119719064|ref|YP_919559.1| - 1.1e-06 28.0 0.0 3.3e-05 23.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|119719064|ref|YP_919559.1| - 5.2e-06 26.6 0.1 0.0024 18.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|119719064|ref|YP_919559.1| - 0.00013 21.2 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|119719064|ref|YP_919559.1| - 0.00031 20.4 0.0 0.0016 18.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|119719064|ref|YP_919559.1| - 0.00041 19.8 0.0 0.00076 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|119719064|ref|YP_919559.1| - 0.00078 18.9 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|119719064|ref|YP_919559.1| - 0.00088 18.4 1.6 0.44 9.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain ATP-synt_ab PF00006.20 gi|119719064|ref|YP_919559.1| - 0.0033 16.9 0.0 0.0059 16.1 0.0 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|119719064|ref|YP_919559.1| - 0.0035 17.5 0.0 0.04 14.1 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|119719064|ref|YP_919559.1| - 0.0035 16.7 0.1 0.03 13.7 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|119719064|ref|YP_919559.1| - 0.0048 16.3 0.0 0.011 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|119719064|ref|YP_919559.1| - 0.0056 16.8 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_23 PF13476.1 gi|119719064|ref|YP_919559.1| - 0.0076 16.5 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|119719064|ref|YP_919559.1| - 0.01 15.5 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|119719064|ref|YP_919559.1| - 0.012 15.5 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma54_activat PF00158.21 gi|119719064|ref|YP_919559.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|119719064|ref|YP_919559.1| - 0.016 15.5 0.0 0.058 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|119719064|ref|YP_919559.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.12 gi|119719064|ref|YP_919559.1| - 0.021 14.6 0.1 0.045 13.5 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 Mg_chelatase PF01078.16 gi|119719064|ref|YP_919559.1| - 0.021 13.9 0.0 0.042 12.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|119719064|ref|YP_919559.1| - 0.028 15.2 0.0 0.05 14.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|119719064|ref|YP_919559.1| - 0.03 12.9 0.3 0.49 8.9 0.2 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|119719064|ref|YP_919559.1| - 0.044 12.2 0.1 0.62 8.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|119719064|ref|YP_919559.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_10 PF12846.2 gi|119719064|ref|YP_919559.1| - 0.07 12.5 0.1 0.14 11.5 0.0 1.6 1 1 1 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|119719064|ref|YP_919559.1| - 0.082 12.8 0.0 0.24 11.3 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF2813 PF11398.3 gi|119719064|ref|YP_919559.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) DUF2612 PF11041.3 gi|119719064|ref|YP_919559.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2612) Miro PF08477.8 gi|119719064|ref|YP_919559.1| - 0.14 12.6 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein DUF815 PF05673.8 gi|119719064|ref|YP_919559.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|119719064|ref|YP_919559.1| - 0.17 11.7 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|119719065|ref|YP_919560.1| - 2.3e-21 76.1 15.1 2.3e-21 76.1 10.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|119719065|ref|YP_919560.1| - 0.0021 17.3 3.6 0.0054 16.0 0.1 2.7 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|119719066|ref|YP_919561.1| - 7.3e-30 103.8 12.4 7.3e-30 103.8 8.6 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|119719067|ref|YP_919562.1| - 4.1e-18 65.3 0.2 4.1e-18 65.3 0.2 2.5 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle FlaC_arch PF05377.6 gi|119719067|ref|YP_919562.1| - 0.025 14.4 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) HTH_AsnC-type PF13404.1 gi|119719068|ref|YP_919563.1| - 3.4e-13 48.8 0.9 5.9e-13 48.1 0.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|119719068|ref|YP_919563.1| - 4e-13 48.5 0.7 6.9e-13 47.7 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|119719068|ref|YP_919563.1| - 2.5e-12 46.2 0.0 4.6e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|119719068|ref|YP_919563.1| - 5.3e-07 29.1 0.4 9.4e-07 28.3 0.3 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|119719068|ref|YP_919563.1| - 5e-06 26.1 0.1 1.3e-05 24.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|119719068|ref|YP_919563.1| - 6.5e-06 25.8 0.2 1.1e-05 25.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|119719068|ref|YP_919563.1| - 1.5e-05 24.4 0.0 2.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|119719068|ref|YP_919563.1| - 2.8e-05 23.6 0.1 4.9e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|119719068|ref|YP_919563.1| - 0.00046 20.4 0.5 0.00089 19.5 0.1 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|119719068|ref|YP_919563.1| - 0.00048 20.1 0.0 0.00087 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|119719068|ref|YP_919563.1| - 0.00051 19.7 0.0 0.00095 18.8 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain FeoC PF09012.5 gi|119719068|ref|YP_919563.1| - 0.0027 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_CodY PF08222.6 gi|119719068|ref|YP_919563.1| - 0.004 16.4 0.7 0.0091 15.3 0.1 1.9 2 0 0 2 2 2 1 CodY helix-turn-helix domain TrmB PF01978.14 gi|119719068|ref|YP_919563.1| - 0.0049 16.5 0.2 0.009 15.7 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|119719068|ref|YP_919563.1| - 0.0065 16.0 0.1 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|119719068|ref|YP_919563.1| - 0.0068 15.9 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_12 PF08461.5 gi|119719068|ref|YP_919563.1| - 0.019 14.7 2.4 0.55 10.0 0.2 2.5 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain HTH_DeoR PF08220.7 gi|119719068|ref|YP_919563.1| - 0.021 14.3 0.2 0.036 13.5 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|119719068|ref|YP_919563.1| - 0.023 14.8 0.1 0.062 13.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator DUF4423 PF14394.1 gi|119719068|ref|YP_919563.1| - 0.024 14.1 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FaeA PF04703.7 gi|119719068|ref|YP_919563.1| - 0.041 14.0 0.0 0.84 9.8 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein HTH_5 PF01022.15 gi|119719068|ref|YP_919563.1| - 0.045 13.4 0.0 0.081 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_WhiA PF02650.9 gi|119719068|ref|YP_919563.1| - 0.048 14.0 0.1 0.086 13.2 0.0 1.4 1 0 0 1 1 1 0 WhiA C-terminal HTH domain TFIIE_alpha PF02002.12 gi|119719068|ref|YP_919563.1| - 0.068 12.6 0.3 0.11 11.9 0.2 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit EAP30 PF04157.11 gi|119719068|ref|YP_919563.1| - 0.069 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_1 PF00126.22 gi|119719068|ref|YP_919563.1| - 0.094 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|119719068|ref|YP_919563.1| - 0.1 11.9 0.1 0.21 10.9 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.22 gi|119719070|ref|YP_919565.1| - 4.7e-05 23.0 2.3 4.8e-05 22.9 0.3 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|119719070|ref|YP_919565.1| - 0.0002 21.2 0.1 0.0033 17.3 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1626 PF07788.6 gi|119719070|ref|YP_919565.1| - 0.0087 15.8 0.2 0.037 13.8 0.0 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF1626) MarR_2 PF12802.2 gi|119719070|ref|YP_919565.1| - 0.012 15.2 0.0 0.049 13.3 0.0 2.0 2 0 0 2 2 2 0 MarR family NERD PF08378.6 gi|119719070|ref|YP_919565.1| - 0.031 14.5 0.0 0.056 13.7 0.0 1.5 1 1 0 1 1 1 0 Nuclease-related domain HTH_Tnp_ISL3 PF13542.1 gi|119719070|ref|YP_919565.1| - 0.037 13.2 0.4 0.3 10.3 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.1 gi|119719070|ref|YP_919565.1| - 0.039 14.0 0.0 0.089 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Hjc PF01870.13 gi|119719070|ref|YP_919565.1| - 0.046 13.3 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) HTH_20 PF12840.2 gi|119719070|ref|YP_919565.1| - 0.05 13.4 0.4 0.35 10.7 0.3 2.4 1 1 0 1 1 1 0 Helix-turn-helix domain DUF4143 PF13635.1 gi|119719070|ref|YP_919565.1| - 0.055 13.6 0.1 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4143) UPF0102 PF02021.12 gi|119719070|ref|YP_919565.1| - 0.08 12.8 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 DUF134 PF02001.11 gi|119719070|ref|YP_919565.1| - 0.086 12.7 0.2 0.2 11.5 0.0 1.7 2 1 0 2 2 2 0 Protein of unknown function DUF134 Clp_N PF02861.15 gi|119719070|ref|YP_919565.1| - 0.38 10.7 2.3 2.8 7.9 0.1 3.0 3 0 0 3 3 3 0 Clp amino terminal domain HTH_31 PF13560.1 gi|119719070|ref|YP_919565.1| - 5 7.3 6.8 5 7.4 0.1 3.1 3 1 0 3 3 2 0 Helix-turn-helix domain PAPS_reduct PF01507.14 gi|119719071|ref|YP_919566.1| - 5.4e-07 29.6 0.0 8.4e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|119719071|ref|YP_919566.1| - 0.0014 18.1 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Lactamase_B_3 PF13483.1 gi|119719072|ref|YP_919567.1| - 3.3e-33 114.7 0.2 4.9e-33 114.1 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|119719072|ref|YP_919567.1| - 9.8e-17 61.1 0.1 1.3e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|119719072|ref|YP_919567.1| - 0.0058 16.3 3.4 0.13 11.8 2.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF2325 PF10087.4 gi|119719072|ref|YP_919567.1| - 0.024 14.4 0.8 0.056 13.2 0.5 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) Methyltransf_25 PF13649.1 gi|119719072|ref|YP_919567.1| - 0.093 13.1 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Biotin_lipoyl_2 PF13533.1 gi|119719073|ref|YP_919568.1| - 2.5e-17 62.2 0.9 2.2e-08 33.6 0.0 2.3 1 1 1 2 2 2 2 Biotin-lipoyl like Biotin_lipoyl PF00364.17 gi|119719073|ref|YP_919568.1| - 3.2e-17 61.9 3.4 3.2e-17 61.9 2.3 1.5 2 0 0 2 2 2 1 Biotin-requiring enzyme HlyD PF00529.15 gi|119719073|ref|YP_919568.1| - 4e-13 49.3 0.9 1.6e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|119719073|ref|YP_919568.1| - 4.2e-12 46.3 1.0 4.2e-05 23.8 0.1 2.3 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|119719073|ref|YP_919568.1| - 7.8e-09 35.1 2.5 4.6e-06 26.0 0.2 2.1 1 1 1 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|119719073|ref|YP_919568.1| - 1e-06 28.3 2.7 8.5e-06 25.4 0.7 2.2 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|119719073|ref|YP_919568.1| - 1.3e-06 28.3 1.6 0.0012 18.8 0.2 2.7 1 1 1 2 2 2 2 Peptidase family M23 QRPTase_N PF02749.11 gi|119719073|ref|YP_919568.1| - 0.00011 21.9 0.3 0.093 12.5 0.0 2.6 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain DUF2118 PF09891.4 gi|119719073|ref|YP_919568.1| - 0.00097 18.8 1.7 0.005 16.5 0.6 2.0 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2118) GCV_H PF01597.14 gi|119719073|ref|YP_919568.1| - 0.0015 18.2 1.3 0.0029 17.3 0.7 1.6 1 1 0 1 1 1 1 Glycine cleavage H-protein PTS_EIIA_1 PF00358.15 gi|119719073|ref|YP_919568.1| - 0.0093 15.5 0.6 0.11 12.0 0.4 2.7 1 1 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PYNP_C PF07831.8 gi|119719073|ref|YP_919568.1| - 0.013 14.9 0.3 2.5 7.5 0.0 2.3 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain NQRA PF05896.6 gi|119719073|ref|YP_919568.1| - 0.048 12.8 2.0 0.2 10.8 1.1 1.9 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PASTA PF03793.14 gi|119719073|ref|YP_919568.1| - 0.056 13.0 2.6 0.51 10.0 0.6 2.2 2 0 0 2 2 2 0 PASTA domain Apocytochr_F_C PF01333.14 gi|119719073|ref|YP_919568.1| - 0.12 12.2 1.7 0.16 11.8 0.7 1.5 1 1 0 1 1 1 0 Apocytochrome F, C-terminal Carboxyl_trans PF01039.17 gi|119719074|ref|YP_919569.1| - 4.8e-192 638.7 0.1 5.9e-192 638.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|119719074|ref|YP_919569.1| - 0.00012 21.4 0.0 0.00044 19.5 0.0 1.8 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) AHS2 PF02626.10 gi|119719075|ref|YP_919570.1| - 9.2e-06 25.1 0.0 1.2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Allophanate hydrolase subunit 2 Glyco_tranf_2_3 PF13641.1 gi|119719076|ref|YP_919571.1| - 1.2e-32 113.6 0.0 1.5e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|119719076|ref|YP_919571.1| - 1.1e-23 83.7 0.1 1.7e-23 83.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|119719076|ref|YP_919571.1| - 1.9e-18 66.8 11.8 7.7e-18 64.8 8.2 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|119719076|ref|YP_919571.1| - 8.2e-14 51.2 0.0 1.3e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|119719076|ref|YP_919571.1| - 2.5e-07 30.0 0.0 8.6e-07 28.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|119719076|ref|YP_919571.1| - 0.00039 19.7 0.0 0.00094 18.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family PG_binding_2 PF08823.6 gi|119719076|ref|YP_919571.1| - 0.18 11.9 1.0 9.6 6.3 0.0 2.8 3 0 0 3 3 3 0 Putative peptidoglycan binding domain UBA PF00627.26 gi|119719077|ref|YP_919572.1| - 0.0063 16.3 0.0 0.1 12.4 0.0 2.2 2 0 0 2 2 2 1 UBA/TS-N domain UBA_3 PF09288.5 gi|119719077|ref|YP_919572.1| - 0.056 13.0 0.0 0.097 12.2 0.0 1.4 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain RsbRD_N PF14361.1 gi|119719077|ref|YP_919572.1| - 0.12 12.8 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain PqqD PF05402.7 gi|119719077|ref|YP_919572.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) DNA_binding_1 PF01035.15 gi|119719078|ref|YP_919573.1| - 2.6e-25 87.9 0.0 3.8e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_AsnC-type PF13404.1 gi|119719078|ref|YP_919573.1| - 0.047 13.2 0.8 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|119719078|ref|YP_919573.1| - 0.12 11.8 0.0 0.3 10.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ArsA_ATPase PF02374.10 gi|119719079|ref|YP_919574.1| - 2e-30 105.8 0.0 2.5e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|119719079|ref|YP_919574.1| - 4.3e-08 32.7 0.0 6.4e-08 32.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.17 gi|119719079|ref|YP_919574.1| - 0.0016 17.3 0.4 0.027 13.3 0.1 2.5 3 0 0 3 3 3 1 NB-ARC domain AAA_31 PF13614.1 gi|119719079|ref|YP_919574.1| - 0.0022 17.9 1.1 0.0082 16.0 0.0 2.3 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.15 gi|119719079|ref|YP_919574.1| - 0.0031 17.1 0.0 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 Adenylylsulphate kinase Fer4_NifH PF00142.13 gi|119719079|ref|YP_919574.1| - 0.0068 15.6 0.1 0.019 14.1 0.1 1.9 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|119719079|ref|YP_919574.1| - 0.0081 15.5 0.0 0.057 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|119719079|ref|YP_919574.1| - 0.01 15.5 0.1 0.021 14.5 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|119719079|ref|YP_919574.1| - 0.04 13.3 0.0 0.078 12.4 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MipZ PF09140.6 gi|119719079|ref|YP_919574.1| - 0.064 12.3 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ IstB_IS21 PF01695.12 gi|119719079|ref|YP_919574.1| - 0.072 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|119719079|ref|YP_919574.1| - 0.12 12.6 0.0 0.28 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|119719079|ref|YP_919574.1| - 0.14 12.3 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|119719079|ref|YP_919574.1| - 0.16 11.1 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DUF4129 PF13559.1 gi|119719080|ref|YP_919575.1| - 4.9e-13 48.8 0.1 1.2e-12 47.6 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Yip1 PF04893.12 gi|119719080|ref|YP_919575.1| - 0.067 12.6 0.2 0.067 12.6 0.1 2.2 2 0 0 2 2 2 0 Yip1 domain AAA_3 PF07726.6 gi|119719082|ref|YP_919577.1| - 1e-66 222.4 0.1 1.7e-66 221.8 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|119719082|ref|YP_919577.1| - 1.1e-14 54.3 0.0 6.2e-14 51.9 0.0 2.2 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|119719082|ref|YP_919577.1| - 5.5e-08 31.9 0.1 1.7e-06 27.0 0.1 2.6 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|119719082|ref|YP_919577.1| - 0.00066 19.8 0.0 0.0016 18.6 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|119719082|ref|YP_919577.1| - 0.0014 18.0 0.0 0.0043 16.5 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|119719082|ref|YP_919577.1| - 0.004 16.2 0.1 0.049 12.6 0.0 2.7 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|119719082|ref|YP_919577.1| - 0.007 15.5 0.2 1.1 8.4 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF58 PF01882.13 gi|119719083|ref|YP_919578.1| - 7.4e-15 54.8 0.0 1.8e-14 53.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|119719083|ref|YP_919578.1| - 0.027 14.5 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF11 TB2_DP1_HVA22 PF03134.14 gi|119719084|ref|YP_919579.1| - 0.083 12.6 0.4 0.083 12.6 0.3 1.8 2 1 0 2 2 2 0 TB2/DP1, HVA22 family DUF4536 PF15055.1 gi|119719084|ref|YP_919579.1| - 0.21 11.7 0.2 0.21 11.7 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4536) DUF4293 PF14126.1 gi|119719084|ref|YP_919579.1| - 7.6 6.4 9.8 11 5.8 6.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) ADK PF00406.17 gi|119719085|ref|YP_919580.1| - 2e-47 160.8 0.0 2.5e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|119719085|ref|YP_919580.1| - 4.8e-19 67.7 4.4 9.8e-19 66.7 3.0 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|119719085|ref|YP_919580.1| - 2e-11 44.7 0.1 3.7e-11 43.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|119719085|ref|YP_919580.1| - 2.2e-05 24.3 0.0 0.00062 19.6 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|119719085|ref|YP_919580.1| - 9.8e-05 22.6 0.0 0.00019 21.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|119719085|ref|YP_919580.1| - 0.001 19.2 0.0 0.0016 18.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF3039 PF11238.3 gi|119719085|ref|YP_919580.1| - 0.0023 17.3 0.2 0.0043 16.4 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3039) AAA_28 PF13521.1 gi|119719085|ref|YP_919580.1| - 0.0097 15.8 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zn_ribbon_recom PF13408.1 gi|119719085|ref|YP_919580.1| - 0.028 14.6 0.6 3.6 7.9 0.2 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Auto_anti-p27 PF06677.7 gi|119719085|ref|YP_919580.1| - 0.037 13.7 0.7 0.38 10.5 0.2 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|119719085|ref|YP_919580.1| - 0.038 13.4 0.7 0.072 12.6 0.1 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TIP49 PF06068.8 gi|119719085|ref|YP_919580.1| - 0.071 11.8 0.0 0.097 11.3 0.0 1.1 1 0 0 1 1 1 0 TIP49 C-terminus zf-IS66 PF13005.2 gi|119719085|ref|YP_919580.1| - 0.098 12.6 5.9 0.32 11.0 0.2 3.6 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF258 PF03193.11 gi|119719085|ref|YP_919580.1| - 0.11 11.6 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF815 PF05673.8 gi|119719085|ref|YP_919580.1| - 0.12 11.2 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Thymidylate_kin PF02223.12 gi|119719085|ref|YP_919580.1| - 0.13 11.6 0.1 3.7 6.8 0.0 2.4 3 0 0 3 3 3 0 Thymidylate kinase Prok-RING_1 PF14446.1 gi|119719085|ref|YP_919580.1| - 0.18 11.5 2.5 1.6 8.4 0.3 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|119719085|ref|YP_919580.1| - 0.69 9.6 4.7 8.1 6.2 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal PmbA_TldD PF01523.11 gi|119719086|ref|YP_919581.1| - 6.6e-63 212.7 0.5 1e-62 212.0 0.3 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|119719087|ref|YP_919582.1| - 1e-51 176.0 0.1 1.2e-51 175.7 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase CcmH PF03918.9 gi|119719088|ref|YP_919583.1| - 0.24 10.3 1.0 21 4.0 0.1 2.7 2 1 0 2 2 2 0 Cytochrome C biogenesis protein Transglut_core PF01841.14 gi|119719089|ref|YP_919584.1| - 7.2e-22 77.7 0.0 1.6e-21 76.6 0.0 1.6 1 1 0 1 1 1 1 Transglutaminase-like superfamily HAS-barrel PF09378.5 gi|119719089|ref|YP_919584.1| - 0.007 16.2 0.2 0.021 14.7 0.1 1.8 1 0 0 1 1 1 1 HAS barrel domain AA_kinase PF00696.23 gi|119719090|ref|YP_919585.1| - 3.3e-28 98.8 0.0 4.3e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family HTH_1 PF00126.22 gi|119719091|ref|YP_919586.1| - 1e-13 50.7 0.2 1.6e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|119719091|ref|YP_919586.1| - 0.0008 19.3 1.7 0.00094 19.1 0.5 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|119719091|ref|YP_919586.1| - 0.0035 16.9 0.2 0.0093 15.5 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|119719091|ref|YP_919586.1| - 0.0052 16.1 0.0 0.015 14.7 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|119719091|ref|YP_919586.1| - 0.0068 16.5 0.2 0.0086 16.2 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn helix ThiS PF02597.15 gi|119719092|ref|YP_919587.1| - 1.1e-11 44.9 0.0 1.8e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|119719092|ref|YP_919587.1| - 0.01 15.6 0.1 0.019 14.8 0.1 1.4 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Ub-Mut7C PF14451.1 gi|119719092|ref|YP_919587.1| - 0.028 13.9 0.2 0.12 11.9 0.0 1.9 2 1 0 2 2 2 0 Mut7-C ubiquitin DUF4333 PF14230.1 gi|119719092|ref|YP_919587.1| - 0.05 13.5 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4333) GSH-S_ATP PF02955.11 gi|119719092|ref|YP_919587.1| - 0.14 11.2 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain Fer4_7 PF12838.2 gi|119719093|ref|YP_919588.1| - 6.9e-16 58.3 44.8 4.2e-10 39.8 7.8 5.0 4 3 2 6 6 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119719093|ref|YP_919588.1| - 5.2e-15 55.4 29.2 4.8e-05 23.5 4.3 4.2 3 2 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119719093|ref|YP_919588.1| - 1.1e-14 53.3 41.8 3e-05 23.4 3.6 6.2 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|119719093|ref|YP_919588.1| - 2.8e-13 49.6 29.1 7.4e-06 25.8 7.3 5.4 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719093|ref|YP_919588.1| - 7.6e-13 48.0 28.5 9.7e-09 34.9 6.5 4.4 6 1 0 6 6 5 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719093|ref|YP_919588.1| - 2e-11 43.2 48.4 2.3e-05 24.0 1.9 6.2 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119719093|ref|YP_919588.1| - 1.1e-08 34.8 7.2 1.1e-08 34.8 5.0 4.4 5 1 1 6 6 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719093|ref|YP_919588.1| - 5.2e-08 32.3 55.0 0.00024 20.8 2.9 6.4 8 0 0 8 8 7 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|119719093|ref|YP_919588.1| - 2.4e-07 31.4 37.3 0.021 15.5 1.5 5.2 4 2 2 6 6 5 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|119719093|ref|YP_919588.1| - 7.5e-06 26.2 40.2 0.0037 17.5 1.3 5.4 4 3 1 5 5 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119719093|ref|YP_919588.1| - 1.4e-05 25.0 13.4 0.00087 19.4 1.8 7.3 9 0 0 9 9 8 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|119719093|ref|YP_919588.1| - 0.0045 17.4 5.5 0.0045 17.4 3.8 6.7 9 0 0 9 9 6 3 4Fe-4S binding domain Fer4_11 PF13247.1 gi|119719093|ref|YP_919588.1| - 0.012 15.4 21.3 0.058 13.2 4.7 3.6 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119719093|ref|YP_919588.1| - 0.015 15.6 1.3 0.015 15.6 0.9 5.2 4 2 0 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|119719093|ref|YP_919588.1| - 0.043 14.3 1.7 0.043 14.3 1.2 4.8 5 0 0 5 5 5 0 4Fe-4S single cluster domain zf-dskA_traR PF01258.12 gi|119719093|ref|YP_919588.1| - 0.098 12.4 0.0 0.098 12.4 0.0 4.9 6 0 0 6 6 5 0 Prokaryotic dksA/traR C4-type zinc finger AFOR_C PF01314.13 gi|119719094|ref|YP_919589.1| - 8.1e-155 515.1 0.0 1e-154 514.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|119719094|ref|YP_919589.1| - 4.6e-83 277.5 0.3 1e-82 276.3 0.2 1.6 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Peptidase_M42 PF05343.9 gi|119719095|ref|YP_919590.1| - 2.4e-87 292.4 0.0 2.8e-87 292.2 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|119719095|ref|YP_919590.1| - 3e-09 36.6 0.2 8.3e-09 35.2 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|119719095|ref|YP_919590.1| - 1.1e-08 35.0 0.1 6.4e-08 32.5 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|119719095|ref|YP_919590.1| - 2.7e-05 22.8 0.0 0.012 14.1 0.0 2.1 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) NTP_transf_3 PF12804.2 gi|119719096|ref|YP_919591.1| - 1.1e-22 80.8 1.3 1.3e-22 80.5 0.9 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|119719096|ref|YP_919591.1| - 0.14 11.3 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyl transferase Oxidored_q1 PF00361.15 gi|119719098|ref|YP_919593.1| - 9.5e-56 189.0 12.4 9.5e-56 189.0 8.6 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|119719098|ref|YP_919593.1| - 0.00011 21.3 2.5 0.00011 21.3 1.7 2.2 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q6 PF01058.17 gi|119719099|ref|YP_919594.1| - 2.7e-26 91.7 1.7 4.5e-26 91.0 1.2 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_7 PF12838.2 gi|119719100|ref|YP_919595.1| - 6.1e-18 64.9 34.5 1.4e-10 41.3 8.3 2.6 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119719100|ref|YP_919595.1| - 9.4e-15 53.5 20.6 3.6e-08 32.6 4.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119719100|ref|YP_919595.1| - 2.7e-10 39.8 26.4 6.8e-08 32.1 9.9 2.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719100|ref|YP_919595.1| - 8.1e-10 38.0 17.6 4.1e-06 26.3 3.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|119719100|ref|YP_919595.1| - 1.8e-09 37.4 13.5 9.2e-06 25.5 1.7 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719100|ref|YP_919595.1| - 7.2e-09 35.1 13.2 4.6e-06 26.2 3.8 3.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119719100|ref|YP_919595.1| - 3.1e-08 33.3 18.5 7.2e-07 28.9 6.5 2.4 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119719100|ref|YP_919595.1| - 3.1e-07 30.5 16.5 0.00029 21.0 0.4 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119719100|ref|YP_919595.1| - 2e-06 28.4 17.2 0.0042 17.7 4.8 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|119719100|ref|YP_919595.1| - 1.3e-05 25.4 13.1 0.0042 17.4 2.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119719100|ref|YP_919595.1| - 1.8e-05 25.0 14.5 0.0048 17.2 0.5 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain HypA PF01155.14 gi|119719100|ref|YP_919595.1| - 0.0052 16.4 0.7 0.0052 16.4 0.5 2.1 1 1 1 2 2 2 1 Hydrogenase expression/synthesis hypA family Fer4_4 PF12800.2 gi|119719100|ref|YP_919595.1| - 0.0058 16.8 26.4 0.019 15.2 1.1 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|119719100|ref|YP_919595.1| - 0.0076 16.7 3.7 0.0076 16.7 2.5 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain zf-FCS PF06467.9 gi|119719100|ref|YP_919595.1| - 0.018 14.7 0.8 0.21 11.2 0.0 2.7 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF2321 PF10083.4 gi|119719100|ref|YP_919595.1| - 0.022 14.2 0.6 0.022 14.2 0.4 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Fer4_15 PF13459.1 gi|119719100|ref|YP_919595.1| - 0.029 14.9 17.6 0.11 13.0 2.1 3.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain zf-CSL PF05207.8 gi|119719100|ref|YP_919595.1| - 0.056 12.9 0.1 0.056 12.9 0.1 3.0 2 1 1 3 3 3 0 CSL zinc finger Fer4_11 PF13247.1 gi|119719100|ref|YP_919595.1| - 0.97 9.3 10.1 0.13 12.1 4.3 1.6 2 0 0 2 2 1 0 4Fe-4S dicluster domain zf-H2C2_2 PF13465.1 gi|119719100|ref|YP_919595.1| - 4.1 7.8 8.5 6.5 7.2 0.0 3.3 3 0 0 3 3 3 0 Zinc-finger double domain Mut7-C PF01927.11 gi|119719100|ref|YP_919595.1| - 6 6.8 6.6 0.35 10.8 0.4 1.8 1 1 1 2 2 2 0 Mut7-C RNAse domain Complex1_49kDa PF00346.14 gi|119719101|ref|YP_919596.1| - 3.1e-39 134.6 0.0 6.6e-28 97.4 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|119719101|ref|YP_919596.1| - 9.2e-28 96.5 0.0 1.7e-27 95.6 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|119719101|ref|YP_919596.1| - 1.8e-21 76.5 0.4 7.7e-15 54.6 0.1 3.0 1 1 1 3 3 3 2 Nickel-dependent hydrogenase Oxidored_q1 PF00361.15 gi|119719102|ref|YP_919597.1| - 9.8e-48 162.7 18.1 9.8e-48 162.7 12.6 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|119719102|ref|YP_919597.1| - 0.002 17.6 1.8 0.002 17.6 1.2 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|119719103|ref|YP_919598.1| - 2.6e-43 148.2 18.6 2.6e-43 148.2 12.9 2.9 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|119719103|ref|YP_919598.1| - 8.9e-07 28.3 1.7 8.9e-07 28.3 1.1 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|119719104|ref|YP_919599.1| - 1.1e-05 24.9 1.0 1.1e-05 24.9 0.7 2.8 3 1 0 3 3 3 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2178 PF09946.4 gi|119719104|ref|YP_919599.1| - 1.2 8.8 6.5 14 5.4 0.7 3.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2178) NADHdh PF00146.16 gi|119719105|ref|YP_919600.1| - 1.3e-24 86.8 19.3 1.6e-24 86.5 13.4 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q1 PF00361.15 gi|119719106|ref|YP_919601.1| - 3.5e-54 183.8 10.9 3.5e-54 183.8 7.5 3.6 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Fer4_11 PF13247.1 gi|119719107|ref|YP_919602.1| - 1.8e-27 95.1 14.4 1.8e-27 95.1 10.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119719107|ref|YP_919602.1| - 1e-13 51.4 56.8 5.2e-07 29.9 8.7 3.5 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719107|ref|YP_919602.1| - 2.1e-10 40.2 45.2 2.7e-06 27.0 6.7 3.7 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119719107|ref|YP_919602.1| - 6.7e-10 39.0 32.1 4.8e-07 29.9 5.3 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719107|ref|YP_919602.1| - 1.2e-09 37.5 44.3 7.8e-05 22.3 1.2 5.1 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|119719107|ref|YP_919602.1| - 1.7e-09 36.8 47.6 5.3e-07 28.9 1.4 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|119719107|ref|YP_919602.1| - 3.7e-09 35.9 16.2 3.9e-06 26.4 1.3 4.9 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|119719107|ref|YP_919602.1| - 2e-08 33.8 35.4 0.00035 20.6 1.5 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|119719107|ref|YP_919602.1| - 4.1e-08 33.2 44.9 0.0019 18.6 2.5 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|119719107|ref|YP_919602.1| - 1e-05 25.8 24.8 0.22 11.8 4.8 4.3 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119719107|ref|YP_919602.1| - 0.00016 21.4 35.1 0.0012 18.6 9.4 3.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119719107|ref|YP_919602.1| - 0.00029 21.5 29.3 6.3 7.6 0.0 4.8 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|119719107|ref|YP_919602.1| - 0.006 16.9 1.5 0.006 16.9 1.0 5.0 3 1 3 6 6 6 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719107|ref|YP_919602.1| - 0.0061 16.5 33.3 0.3 11.1 15.7 4.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain NodA PF02474.10 gi|119719107|ref|YP_919602.1| - 0.046 13.0 0.0 0.059 12.6 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein A (NodA) Fer4_15 PF13459.1 gi|119719107|ref|YP_919602.1| - 0.4 11.2 33.1 0.2 12.2 7.3 3.7 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|119719107|ref|YP_919602.1| - 9.3 5.9 27.7 5.9 6.5 3.6 4.1 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.17 gi|119719108|ref|YP_919603.1| - 1.9e-102 343.2 0.0 2.3e-102 342.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|119719108|ref|YP_919603.1| - 3.7e-29 100.7 0.1 8.1e-29 99.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|119719108|ref|YP_919603.1| - 4.6e-17 61.5 0.6 1.1e-16 60.4 0.4 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Form_Nir_trans PF01226.12 gi|119719109|ref|YP_919604.1| - 8.7e-81 270.5 22.9 1.4e-80 269.8 15.9 1.3 1 0 0 1 1 1 1 Formate/nitrite transporter PsiE PF06146.7 gi|119719111|ref|YP_919606.1| - 2.8e-05 24.2 9.1 2.8e-05 24.2 6.3 1.9 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Macro PF01661.16 gi|119719112|ref|YP_919607.1| - 2e-36 124.4 0.0 3.2e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 Macro domain MobB PF03205.9 gi|119719113|ref|YP_919608.1| - 1.2e-07 31.4 0.0 2.4e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B LpxK PF02606.9 gi|119719113|ref|YP_919608.1| - 0.016 14.2 0.1 0.048 12.6 0.0 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase CbiA PF01656.18 gi|119719113|ref|YP_919608.1| - 0.041 13.2 0.2 0.12 11.7 0.1 1.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain KaiC PF06745.8 gi|119719113|ref|YP_919608.1| - 0.048 12.7 0.0 0.079 12.0 0.0 1.3 1 0 0 1 1 1 0 KaiC SRP54 PF00448.17 gi|119719113|ref|YP_919608.1| - 0.048 13.0 0.1 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MutL PF13941.1 gi|119719113|ref|YP_919608.1| - 0.063 11.5 0.0 0.096 10.9 0.0 1.2 1 0 0 1 1 1 0 MutL protein AAA_10 PF12846.2 gi|119719113|ref|YP_919608.1| - 0.071 12.5 0.1 0.16 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA-like domain Miro PF08477.8 gi|119719113|ref|YP_919608.1| - 0.081 13.4 0.1 0.22 11.9 0.1 1.7 2 0 0 2 2 2 0 Miro-like protein ArgK PF03308.11 gi|119719113|ref|YP_919608.1| - 0.18 10.5 3.0 0.3 9.8 2.1 1.3 1 0 0 1 1 1 0 ArgK protein FBPase_3 PF01950.11 gi|119719114|ref|YP_919609.1| - 8.5e-189 627.0 0.0 9.7e-189 626.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase E1-E2_ATPase PF00122.15 gi|119719115|ref|YP_919610.1| - 1.7e-75 252.9 3.3 4.1e-75 251.7 2.3 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|119719115|ref|YP_919610.1| - 6e-41 141.2 0.2 1.5e-40 139.8 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|119719115|ref|YP_919610.1| - 3.7e-37 127.6 3.0 3.7e-37 127.6 2.0 2.4 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|119719115|ref|YP_919610.1| - 8.9e-23 79.5 0.2 7.6e-22 76.5 0.0 2.6 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|119719115|ref|YP_919610.1| - 1.6e-20 74.0 0.0 8.1e-20 71.8 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|119719115|ref|YP_919610.1| - 1.1e-16 60.5 0.0 2.4e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|119719115|ref|YP_919610.1| - 1.4e-06 28.1 0.2 0.00031 20.4 0.2 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|119719115|ref|YP_919610.1| - 0.0084 16.3 0.0 0.04 14.1 0.0 2.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF3784 PF12650.2 gi|119719115|ref|YP_919610.1| - 0.032 14.1 0.0 0.032 14.1 0.0 2.8 4 0 0 4 4 4 0 Domain of unknown function (DUF3784) PAC2 PF09754.4 gi|119719116|ref|YP_919611.1| - 4.9e-41 140.9 0.0 5.7e-41 140.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF3571 PF12095.3 gi|119719116|ref|YP_919611.1| - 0.017 15.3 0.1 0.029 14.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3571) DUF770 PF05591.7 gi|119719116|ref|YP_919611.1| - 0.049 13.1 0.3 0.079 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF770) TatD_DNase PF01026.16 gi|119719117|ref|YP_919612.1| - 1.9e-45 155.0 0.0 2.2e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Inositol_P PF00459.20 gi|119719118|ref|YP_919613.1| - 1.7e-36 125.9 0.0 2e-36 125.6 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|119719118|ref|YP_919613.1| - 5.1e-05 22.2 0.0 7.7e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Metallophos_2 PF12850.2 gi|119719119|ref|YP_919614.1| - 4.5e-28 98.0 0.0 5.3e-28 97.8 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|119719119|ref|YP_919614.1| - 2.3e-07 30.2 0.1 0.0002 20.6 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|119719119|ref|YP_919614.1| - 7e-07 28.8 0.0 8.7e-05 21.9 0.0 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SWIM PF04434.12 gi|119719120|ref|YP_919615.1| - 0.00066 19.0 0.3 0.0013 18.1 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger UPF0104 PF03706.8 gi|119719121|ref|YP_919616.1| - 2.3e-30 105.9 35.3 3.2e-30 105.4 24.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) NAD_binding_8 PF13450.1 gi|119719122|ref|YP_919617.1| - 1.2e-14 54.0 0.3 4.9e-14 52.1 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|119719122|ref|YP_919617.1| - 1.6e-12 47.3 0.0 2.2e-08 33.5 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|119719122|ref|YP_919617.1| - 1.1e-07 31.1 1.7 3.2e-07 29.6 0.3 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|119719122|ref|YP_919617.1| - 8.8e-07 28.1 0.4 1.3e-06 27.5 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|119719122|ref|YP_919617.1| - 4.6e-06 26.9 0.6 7.3e-05 23.0 0.3 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|119719122|ref|YP_919617.1| - 1.1e-05 24.7 0.0 1.5e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|119719122|ref|YP_919617.1| - 1.8e-05 24.6 0.0 4e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|119719122|ref|YP_919617.1| - 0.0012 17.8 0.3 0.0019 17.1 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|119719122|ref|YP_919617.1| - 0.0014 17.1 0.0 0.0018 16.8 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|119719122|ref|YP_919617.1| - 0.0031 17.6 0.0 0.0053 16.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|119719122|ref|YP_919617.1| - 0.019 13.8 0.1 0.038 12.9 0.1 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|119719122|ref|YP_919617.1| - 0.027 13.5 0.1 0.046 12.7 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|119719122|ref|YP_919617.1| - 0.038 13.0 0.1 0.07 12.2 0.1 1.3 1 0 0 1 1 1 0 Thi4 family NAD_binding_10 PF13460.1 gi|119719122|ref|YP_919617.1| - 0.052 13.5 0.1 0.095 12.6 0.1 1.4 1 0 0 1 1 1 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|119719122|ref|YP_919617.1| - 0.064 12.9 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.21 gi|119719123|ref|YP_919618.1| - 3.4e-22 78.9 0.2 9.1e-22 77.5 0.0 1.8 3 0 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|119719123|ref|YP_919618.1| - 3.4e-18 66.2 0.0 4.6e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|119719123|ref|YP_919618.1| - 1e-11 44.4 1.3 6.1e-11 41.9 0.9 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|119719123|ref|YP_919618.1| - 3.2e-06 26.9 0.4 5.6e-06 26.1 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|119719123|ref|YP_919618.1| - 6.3e-05 22.3 0.1 0.024 13.8 0.0 2.8 2 1 1 3 3 3 2 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|119719123|ref|YP_919618.1| - 0.0009 18.5 0.0 0.0019 17.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 DUF3487 PF11990.3 gi|119719123|ref|YP_919618.1| - 0.0062 15.9 0.3 0.01 15.2 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3487) Myc_target_1 PF15179.1 gi|119719123|ref|YP_919618.1| - 0.17 11.4 0.3 0.33 10.5 0.2 1.4 1 0 0 1 1 1 0 Myc target protein 1 tRNA_anti-codon PF01336.20 gi|119719124|ref|YP_919619.1| - 0.0013 18.5 0.1 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF4147 PF13660.1 gi|119719125|ref|YP_919620.1| - 8.5e-80 267.3 1.6 1.2e-79 266.8 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|119719125|ref|YP_919620.1| - 3.2e-38 130.1 0.8 6.2e-38 129.2 0.5 1.5 1 0 0 1 1 1 1 MOFRL family OCD_Mu_crystall PF02423.10 gi|119719126|ref|YP_919621.1| - 1.3e-97 326.3 0.1 1.5e-97 326.1 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|119719126|ref|YP_919621.1| - 0.075 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF95 PF01944.12 gi|119719127|ref|YP_919622.1| - 3.9e-26 91.7 15.5 4.5e-26 91.5 10.8 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 EIID-AGA PF03613.9 gi|119719127|ref|YP_919622.1| - 0.013 14.3 3.2 0.018 13.9 2.2 1.2 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF1352 PF07086.7 gi|119719127|ref|YP_919622.1| - 1.2 8.7 5.1 1.6 8.3 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1352) Glyco_hydro_57 PF03065.10 gi|119719128|ref|YP_919623.1| - 9.1e-33 113.6 0.7 5.3e-32 111.1 0.1 2.3 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 Alba PF01918.16 gi|119719129|ref|YP_919624.1| - 4.3e-13 48.6 0.1 5.9e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|119719129|ref|YP_919624.1| - 0.033 13.8 0.4 0.085 12.5 0.1 1.8 1 1 1 2 2 2 0 Rpp20 subunit of nuclear RNase MRP and P ABC_tran PF00005.22 gi|119719130|ref|YP_919625.1| - 1.5e-40 138.6 0.0 5.2e-20 72.1 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|119719130|ref|YP_919625.1| - 2e-13 50.9 3.5 0.0056 16.6 0.0 4.3 3 1 1 4 4 4 4 AAA domain RLI PF04068.10 gi|119719130|ref|YP_919625.1| - 3.5e-12 45.6 1.4 7.6e-12 44.6 1.0 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|119719130|ref|YP_919625.1| - 1.1e-09 37.8 1.6 0.02 14.1 0.0 4.0 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|119719130|ref|YP_919625.1| - 5.4e-08 32.1 2.3 5.4e-08 32.1 1.6 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|119719130|ref|YP_919625.1| - 2.5e-06 27.0 11.5 2.3e-05 24.0 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_16 PF13191.1 gi|119719130|ref|YP_919625.1| - 6.4e-06 26.2 0.9 0.087 12.8 0.0 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|119719130|ref|YP_919625.1| - 6.8e-05 22.3 0.3 0.23 11.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_21 PF14697.1 gi|119719130|ref|YP_919625.1| - 0.00017 21.3 10.8 0.00026 20.7 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA PF00004.24 gi|119719130|ref|YP_919625.1| - 0.00047 20.3 0.2 0.27 11.4 0.0 3.5 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) Fer4_7 PF12838.2 gi|119719130|ref|YP_919625.1| - 0.0006 20.1 10.5 0.0012 19.1 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|119719130|ref|YP_919625.1| - 0.00094 19.3 0.7 2 8.5 0.0 3.5 3 2 0 3 3 2 1 AAA domain Fer4_2 PF12797.2 gi|119719130|ref|YP_919625.1| - 0.0011 18.7 11.8 0.002 17.9 1.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_15 PF13175.1 gi|119719130|ref|YP_919625.1| - 0.0011 18.1 0.0 8.7 5.2 0.0 3.9 4 0 0 4 4 4 0 AAA ATPase domain Rad17 PF03215.10 gi|119719130|ref|YP_919625.1| - 0.0016 17.2 0.0 0.59 8.7 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|119719130|ref|YP_919625.1| - 0.0019 18.5 0.7 0.14 12.4 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|119719130|ref|YP_919625.1| - 0.0021 18.8 4.2 0.15 12.8 0.3 3.7 3 2 0 3 3 3 1 AAA domain DUF258 PF03193.11 gi|119719130|ref|YP_919625.1| - 0.0025 17.0 0.3 1.4 8.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Fer4_10 PF13237.1 gi|119719130|ref|YP_919625.1| - 0.003 17.3 12.8 0.0051 16.5 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Miro PF08477.8 gi|119719130|ref|YP_919625.1| - 0.0037 17.7 0.7 4.9 7.6 0.1 3.0 2 1 0 2 2 2 0 Miro-like protein AAA_18 PF13238.1 gi|119719130|ref|YP_919625.1| - 0.006 16.8 0.3 5.4 7.3 0.0 2.8 2 1 1 3 3 2 0 AAA domain DUF87 PF01935.12 gi|119719130|ref|YP_919625.1| - 0.0069 16.2 0.8 0.86 9.3 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 RNA_helicase PF00910.17 gi|119719130|ref|YP_919625.1| - 0.007 16.5 0.1 2.2 8.4 0.0 3.0 3 0 0 3 3 2 1 RNA helicase Fer4_16 PF13484.1 gi|119719130|ref|YP_919625.1| - 0.015 16.0 0.6 0.015 16.0 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_28 PF13521.1 gi|119719130|ref|YP_919625.1| - 0.016 15.2 0.7 3.8 7.4 0.0 3.2 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|119719130|ref|YP_919625.1| - 0.021 14.4 0.9 0.48 10.0 0.0 2.4 2 0 0 2 2 2 0 NACHT domain SRP54 PF00448.17 gi|119719130|ref|YP_919625.1| - 0.026 13.9 0.4 1.6 8.1 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|119719130|ref|YP_919625.1| - 0.027 14.1 0.6 0.86 9.3 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|119719130|ref|YP_919625.1| - 0.028 13.1 0.6 4 6.1 0.0 2.3 2 0 0 2 2 2 0 ArgK protein Fer4_9 PF13187.1 gi|119719130|ref|YP_919625.1| - 0.038 14.2 11.8 0.11 12.7 8.2 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_14 PF13173.1 gi|119719130|ref|YP_919625.1| - 0.046 13.6 0.1 6 6.7 0.1 3.2 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|119719130|ref|YP_919625.1| - 0.049 13.0 3.1 0.55 9.6 0.0 3.2 4 0 0 4 4 4 0 AAA domain AAA_24 PF13479.1 gi|119719130|ref|YP_919625.1| - 0.068 12.7 0.7 1.2 8.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|119719130|ref|YP_919625.1| - 0.1 12.4 1.0 7.5 6.4 0.0 3.3 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.10 gi|119719130|ref|YP_919625.1| - 0.13 12.0 1.2 2.4 7.8 0.0 3.0 2 0 0 2 2 2 0 NTPase AAA_10 PF12846.2 gi|119719130|ref|YP_919625.1| - 0.28 10.5 2.5 15 4.9 0.0 2.5 2 0 0 2 2 2 0 AAA-like domain AAA_5 PF07728.9 gi|119719130|ref|YP_919625.1| - 0.28 10.8 1.3 8.9 6.0 0.0 3.2 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) Fer4_3 PF12798.2 gi|119719130|ref|YP_919625.1| - 0.76 10.4 14.8 0.082 13.5 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|119719130|ref|YP_919625.1| - 0.79 9.8 9.0 2 8.5 6.3 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119719130|ref|YP_919625.1| - 1.4 9.3 11.2 0.14 12.5 2.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119719130|ref|YP_919625.1| - 1.7 9.2 14.9 0.13 12.7 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|119719130|ref|YP_919625.1| - 2.8 8.3 10.3 28 5.1 7.3 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain RNA_POL_M_15KD PF02150.11 gi|119719131|ref|YP_919626.1| - 8.4e-09 34.9 1.0 1.9e-08 33.8 0.7 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.14 gi|119719131|ref|YP_919626.1| - 0.001 18.5 2.4 0.0014 18.0 1.7 1.3 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.6 gi|119719131|ref|YP_919626.1| - 0.0013 18.1 1.8 0.35 10.4 0.1 2.6 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain Baculo_PP31 PF05311.6 gi|119719131|ref|YP_919626.1| - 0.0041 16.4 2.5 0.0046 16.2 1.7 1.1 1 0 0 1 1 1 1 Baculovirus 33KDa late protein (PP31) TF_Zn_Ribbon PF08271.7 gi|119719131|ref|YP_919626.1| - 0.0045 16.2 1.9 0.035 13.4 1.3 2.2 1 1 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|119719131|ref|YP_919626.1| - 0.0056 16.4 1.4 0.014 15.2 1.0 1.7 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|119719131|ref|YP_919626.1| - 0.013 14.6 4.3 0.056 12.6 3.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|119719131|ref|YP_919626.1| - 0.014 15.1 0.9 0.026 14.3 0.6 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|119719131|ref|YP_919626.1| - 0.023 13.9 0.8 0.046 12.9 0.6 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|119719131|ref|YP_919626.1| - 0.032 13.7 1.9 0.69 9.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|119719131|ref|YP_919626.1| - 0.041 13.3 2.8 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|119719131|ref|YP_919626.1| - 0.045 14.0 1.4 0.084 13.1 1.0 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain IBR PF01485.16 gi|119719131|ref|YP_919626.1| - 0.096 12.5 0.7 0.19 11.5 0.5 1.6 1 0 0 1 1 1 0 IBR domain C1_1 PF00130.17 gi|119719131|ref|YP_919626.1| - 0.13 12.0 1.1 0.19 11.4 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nudix_N_2 PF14803.1 gi|119719131|ref|YP_919626.1| - 0.14 11.8 5.5 1 9.0 3.8 2.1 1 1 0 1 1 1 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|119719131|ref|YP_919626.1| - 0.15 12.3 1.6 0.36 11.1 1.1 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|119719131|ref|YP_919626.1| - 0.21 11.4 1.9 2 8.3 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin DUF2387 PF09526.5 gi|119719131|ref|YP_919626.1| - 0.39 10.6 2.5 1.2 9.1 1.7 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|119719131|ref|YP_919626.1| - 2.1 8.3 4.9 6.7 6.7 0.2 2.6 2 1 0 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|119719131|ref|YP_919626.1| - 3.1 7.7 6.5 1.9 8.3 0.7 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like THUMP PF02926.12 gi|119719132|ref|YP_919627.1| - 2.4e-16 59.9 1.3 3.4e-16 59.4 0.9 1.2 1 0 0 1 1 1 1 THUMP domain CGI-121 PF08617.5 gi|119719133|ref|YP_919628.1| - 1.6e-07 31.1 0.0 1.9e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 SAM_adeno_trans PF01887.11 gi|119719134|ref|YP_919629.1| - 3.6e-86 288.4 0.0 4.1e-86 288.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase RTC PF01137.16 gi|119719135|ref|YP_919630.1| - 7.2e-71 237.5 0.0 8.3e-71 237.3 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|119719135|ref|YP_919630.1| - 2.1e-23 82.2 0.2 4.1e-23 81.3 0.2 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CDP-OH_P_transf PF01066.16 gi|119719136|ref|YP_919631.1| - 2e-15 56.9 13.9 1.3e-14 54.3 9.6 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase NAC PF01849.13 gi|119719137|ref|YP_919632.1| - 4.1e-12 45.4 0.5 8.7e-12 44.3 0.2 1.6 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|119719137|ref|YP_919632.1| - 5.3e-06 26.1 0.0 8.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 UBA/TS-N domain Gp_dh_N PF00044.19 gi|119719137|ref|YP_919632.1| - 0.13 12.2 0.0 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UBA_4 PF14555.1 gi|119719137|ref|YP_919632.1| - 0.14 11.7 0.0 0.35 10.4 0.0 1.7 2 0 0 2 2 2 0 UBA-like domain DUF434 PF04256.7 gi|119719138|ref|YP_919633.1| - 7.6e-22 76.4 0.8 7.6e-22 76.4 0.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF434) tRNA-synt_2c PF01411.14 gi|119719139|ref|YP_919634.1| - 3.9e-119 398.4 0.0 6.9e-119 397.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|119719139|ref|YP_919634.1| - 4.5e-14 52.0 0.4 9.8e-14 50.9 0.3 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|119719139|ref|YP_919634.1| - 0.0019 17.8 0.0 0.0076 15.9 0.0 2.1 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.10 gi|119719139|ref|YP_919634.1| - 0.0092 15.1 0.8 0.02 14.0 0.4 1.6 1 1 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit ADIP PF11559.3 gi|119719139|ref|YP_919634.1| - 0.03 14.2 0.1 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Dzip-like_N PF13815.1 gi|119719139|ref|YP_919634.1| - 0.084 12.6 1.1 0.24 11.2 0.2 2.0 2 0 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal Pyr_excise PF03013.9 gi|119719139|ref|YP_919634.1| - 0.1 12.3 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase DivIC PF04977.10 gi|119719139|ref|YP_919634.1| - 0.14 11.6 2.2 0.54 9.7 1.5 2.0 1 0 0 1 1 1 0 Septum formation initiator Mei4 PF13971.1 gi|119719139|ref|YP_919634.1| - 0.16 10.8 0.1 0.27 10.1 0.1 1.2 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 FH2 PF02181.18 gi|119719139|ref|YP_919634.1| - 0.17 10.7 0.1 0.4 9.5 0.1 1.5 1 0 0 1 1 1 0 Formin Homology 2 Domain HALZ PF02183.13 gi|119719139|ref|YP_919634.1| - 0.18 11.5 2.7 0.53 10.0 1.8 1.8 1 0 0 1 1 1 0 Homeobox associated leucine zipper TMF_DNA_bd PF12329.3 gi|119719139|ref|YP_919634.1| - 0.29 10.9 6.7 0.72 9.7 4.7 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Sipho_Gp157 PF05565.6 gi|119719139|ref|YP_919634.1| - 0.38 10.3 3.7 1.1 8.7 0.6 2.5 2 0 0 2 2 2 0 Siphovirus Gp157 Prefoldin_2 PF01920.15 gi|119719139|ref|YP_919634.1| - 0.59 9.9 10.2 0.067 12.9 2.6 2.4 2 0 0 2 2 2 0 Prefoldin subunit Osmo_CC PF08946.5 gi|119719139|ref|YP_919634.1| - 1.5 8.9 4.1 3.3 7.8 2.9 1.5 1 0 0 1 1 1 0 Osmosensory transporter coiled coil IncA PF04156.9 gi|119719139|ref|YP_919634.1| - 8.6 5.9 8.5 0.56 9.7 0.5 2.4 3 0 0 3 3 3 0 IncA protein Ribosomal_L10 PF00466.15 gi|119719140|ref|YP_919635.1| - 4.2e-22 77.9 0.1 7.8e-22 77.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_L1 PF00687.16 gi|119719141|ref|YP_919636.1| - 9.5e-44 149.3 0.0 1.1e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|119719142|ref|YP_919637.1| - 2.1e-26 91.8 4.7 3e-26 91.3 3.3 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|119719142|ref|YP_919637.1| - 1.2e-24 85.5 1.1 2.2e-24 84.6 0.4 1.8 1 1 1 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_S19 PF00203.16 gi|119719143|ref|YP_919638.1| - 1.2e-29 101.7 0.2 2.4e-29 100.7 0.2 1.5 2 0 0 2 2 2 1 Ribosomal protein S19 PmbA_TldD PF01523.11 gi|119719143|ref|YP_919638.1| - 0.13 11.5 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative modulator of DNA gyrase Pyr_redox_2 PF07992.9 gi|119719144|ref|YP_919639.1| - 1.4e-18 67.5 2.3 2.8e-17 63.2 1.6 3.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|119719144|ref|YP_919639.1| - 3.6e-12 46.4 7.0 1.6e-10 41.2 0.5 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|119719144|ref|YP_919639.1| - 6.8e-09 36.0 0.4 5.6e-05 23.2 0.0 3.6 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|119719144|ref|YP_919639.1| - 1.3e-08 34.1 6.7 0.011 14.6 0.0 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|119719144|ref|YP_919639.1| - 5.9e-06 26.1 1.1 4.7 6.9 0.0 4.1 3 1 1 4 4 4 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|119719144|ref|YP_919639.1| - 0.0015 17.6 0.4 0.65 8.9 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|119719144|ref|YP_919639.1| - 0.0018 18.2 0.5 0.47 10.5 0.1 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|119719144|ref|YP_919639.1| - 0.0061 15.2 4.4 1.2 7.6 0.5 3.8 3 1 1 4 4 4 1 Tryptophan halogenase K_oxygenase PF13434.1 gi|119719144|ref|YP_919639.1| - 0.018 13.9 0.0 0.11 11.4 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.13 gi|119719144|ref|YP_919639.1| - 0.019 14.9 0.7 1.3 9.0 0.1 2.9 2 2 0 2 2 2 0 TrkA-N domain Amino_oxidase PF01593.19 gi|119719144|ref|YP_919639.1| - 0.024 13.6 0.0 3.3 6.6 0.0 2.3 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|119719144|ref|YP_919639.1| - 0.085 11.3 2.5 8.4 4.7 0.0 3.4 3 1 1 4 4 4 0 HI0933-like protein FAD_binding_2 PF00890.19 gi|119719144|ref|YP_919639.1| - 0.1 11.4 1.3 2.6 6.8 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.7 gi|119719144|ref|YP_919639.1| - 0.21 10.4 1.1 13 4.6 0.1 2.9 2 2 2 4 4 4 0 Lycopene cyclase protein Ribosomal_L2_C PF03947.13 gi|119719145|ref|YP_919640.1| - 3.2e-33 114.2 0.8 4.6e-33 113.7 0.6 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|119719145|ref|YP_919640.1| - 7.7e-15 54.6 0.0 2e-14 53.2 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|119719146|ref|YP_919641.1| - 6.4e-22 77.3 2.0 1.3e-21 76.3 1.4 1.5 1 1 0 1 1 1 1 Ribosomal protein L23 DNA_mis_repair PF01119.14 gi|119719146|ref|YP_919641.1| - 0.032 13.7 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain DnaJ PF00226.26 gi|119719146|ref|YP_919641.1| - 0.037 13.7 0.1 4 7.2 0.0 2.2 2 0 0 2 2 2 0 DnaJ domain DUF3854 PF12965.2 gi|119719146|ref|YP_919641.1| - 0.04 13.5 0.2 2.6 7.7 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3854) TusA PF01206.12 gi|119719146|ref|YP_919641.1| - 0.047 13.3 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA Ribosomal_L4 PF00573.17 gi|119719147|ref|YP_919642.1| - 2.1e-40 138.1 0.8 2.6e-40 137.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|119719148|ref|YP_919643.1| - 1e-68 231.5 0.0 1.2e-68 231.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 DUF2577 PF10844.3 gi|119719148|ref|YP_919643.1| - 0.13 12.2 0.1 1 9.4 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2577) Methyltrn_RNA_3 PF02598.12 gi|119719149|ref|YP_919644.1| - 2.5e-47 161.6 0.0 3.9e-47 160.9 0.0 1.3 1 1 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|119719149|ref|YP_919644.1| - 0.0058 16.5 0.0 0.025 14.4 0.0 1.8 2 0 0 2 2 2 1 SpoU rRNA Methylase family FaeA PF04703.7 gi|119719150|ref|YP_919645.1| - 3.1e-05 24.0 0.1 3.8e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein DUF2582 PF10771.4 gi|119719150|ref|YP_919645.1| - 0.00033 20.4 0.0 0.00041 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) HTH_9 PF08221.6 gi|119719150|ref|YP_919645.1| - 0.00046 19.9 0.1 0.00057 19.7 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.14 gi|119719150|ref|YP_919645.1| - 0.0015 18.2 0.4 0.0018 17.9 0.3 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|119719150|ref|YP_919645.1| - 0.006 15.9 0.1 0.0073 15.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|119719150|ref|YP_919645.1| - 0.033 13.8 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.7 gi|119719150|ref|YP_919645.1| - 0.037 13.5 0.1 0.068 12.7 0.0 1.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|119719150|ref|YP_919645.1| - 0.092 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator RNA_pol_Rpc34 PF05158.7 gi|119719150|ref|YP_919645.1| - 0.093 11.8 0.1 0.1 11.7 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Penicillinase_R PF03965.11 gi|119719150|ref|YP_919645.1| - 0.12 12.4 0.2 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor Tn7_Tnp_TnsA_C PF08721.6 gi|119719150|ref|YP_919645.1| - 0.13 12.2 0.0 0.17 11.9 0.0 1.1 1 0 0 1 1 1 0 TnsA endonuclease C terminal SecY PF00344.15 gi|119719151|ref|YP_919646.1| - 5.7e-86 288.5 20.8 6.8e-86 288.3 14.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|119719151|ref|YP_919646.1| - 3.9e-12 45.4 0.3 1.5e-11 43.5 0.0 2.2 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|119719152|ref|YP_919647.1| - 3.4e-31 108.2 0.6 4.2e-31 107.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|119719153|ref|YP_919648.1| - 4.1e-16 58.2 0.0 8.4e-16 57.3 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.10 gi|119719154|ref|YP_919649.1| - 5.8e-26 89.5 0.0 1.1e-25 88.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|119719154|ref|YP_919649.1| - 7.6e-20 70.4 2.9 8.7e-20 70.2 1.2 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L18p PF00861.17 gi|119719155|ref|YP_919650.1| - 5.5e-34 116.9 0.6 6.9e-34 116.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|119719155|ref|YP_919650.1| - 3.9e-12 46.5 0.0 8.2e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|119719156|ref|YP_919651.1| - 3e-51 173.0 2.3 3.4e-51 172.9 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.2 gi|119719156|ref|YP_919651.1| - 0.0017 18.5 3.0 0.38 11.0 1.0 3.5 3 0 0 3 3 3 1 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|119719157|ref|YP_919652.1| - 2.6e-38 130.4 0.1 3.3e-38 130.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_S8 PF00410.14 gi|119719158|ref|YP_919653.1| - 1.1e-26 93.1 0.0 1.4e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|119719159|ref|YP_919654.1| - 1e-19 69.6 5.0 1.1e-19 69.4 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|119719159|ref|YP_919654.1| - 0.011 15.3 5.2 0.019 14.5 3.6 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-dskA_traR PF01258.12 gi|119719159|ref|YP_919654.1| - 0.073 12.8 1.6 3.7 7.3 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF2039 PF10217.4 gi|119719159|ref|YP_919654.1| - 0.58 10.2 2.5 2.7 8.0 0.1 1.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) Fer4_10 PF13237.1 gi|119719159|ref|YP_919654.1| - 0.64 9.8 2.8 3.6 7.4 1.9 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Ribosomal_L5_C PF00673.16 gi|119719160|ref|YP_919655.1| - 9.6e-26 89.3 0.0 1.4e-25 88.8 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|119719160|ref|YP_919655.1| - 1.2e-17 63.3 0.2 6.8e-17 61.0 0.1 2.1 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|119719161|ref|YP_919656.1| - 1e-26 92.4 0.1 2e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|119719161|ref|YP_919656.1| - 1.9e-17 62.8 3.4 3.1e-17 62.1 2.3 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|119719161|ref|YP_919656.1| - 1e-07 31.2 0.0 2.3e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|119719161|ref|YP_919656.1| - 0.39 10.5 0.1 0.39 10.5 0.1 2.0 2 0 0 2 2 2 0 KOW motif KOW PF00467.24 gi|119719162|ref|YP_919657.1| - 1.7e-08 33.8 5.1 1.7e-08 33.8 3.6 2.4 4 0 0 4 4 4 1 KOW motif NfeD PF01957.13 gi|119719162|ref|YP_919657.1| - 0.065 13.3 0.1 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding eIF-1a PF01176.14 gi|119719162|ref|YP_919657.1| - 0.13 11.7 0.3 0.13 11.7 0.2 1.8 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 IF-2B PF01008.12 gi|119719164|ref|YP_919659.1| - 2.8e-80 269.3 0.1 3.3e-80 269.1 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family LysR_substrate PF03466.15 gi|119719164|ref|YP_919659.1| - 0.023 13.7 0.0 0.048 12.7 0.0 1.6 1 0 0 1 1 1 0 LysR substrate binding domain DUF99 PF01949.11 gi|119719165|ref|YP_919660.1| - 3.9e-65 218.4 0.0 4.7e-65 218.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Peptidase_M24 PF00557.19 gi|119719166|ref|YP_919661.1| - 4.1e-63 212.6 0.1 5.7e-63 212.2 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|119719166|ref|YP_919661.1| - 2.5e-11 44.2 0.1 4.3e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain HHA PF05321.6 gi|119719166|ref|YP_919661.1| - 0.21 11.7 0.8 0.95 9.6 0.3 2.1 1 1 1 2 2 2 0 Haemolysin expression modulating protein HIT PF01230.18 gi|119719168|ref|YP_919663.1| - 0.0001 22.7 0.0 0.00058 20.3 0.0 2.2 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|119719168|ref|YP_919663.1| - 0.00014 22.0 0.0 0.00046 20.4 0.0 1.9 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding NPV_P10 PF05531.7 gi|119719169|ref|YP_919664.1| - 0.093 12.9 0.8 1.5 9.1 0.3 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein TMF_DNA_bd PF12329.3 gi|119719169|ref|YP_919664.1| - 0.12 12.1 3.6 2.7 7.8 0.2 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Tropomyosin_1 PF12718.2 gi|119719169|ref|YP_919664.1| - 0.22 11.3 1.9 0.36 10.6 1.3 1.2 1 0 0 1 1 1 0 Tropomyosin like DUF1664 PF07889.7 gi|119719169|ref|YP_919664.1| - 0.58 9.9 2.0 21 4.9 0.9 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Robl_LC7 PF03259.12 gi|119719170|ref|YP_919665.1| - 7e-05 22.3 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 Roadblock/LC7 domain bcl-2I13 PF12201.3 gi|119719170|ref|YP_919665.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.4 1 1 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing MAPKK1_Int PF08923.5 gi|119719170|ref|YP_919665.1| - 0.081 12.5 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting DUF3271 PF11675.3 gi|119719170|ref|YP_919665.1| - 0.16 11.0 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3271) ATP_bind_1 PF03029.12 gi|119719171|ref|YP_919666.1| - 1.2e-10 41.3 0.1 1.1e-06 28.4 0.0 2.2 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein Arf PF00025.16 gi|119719171|ref|YP_919666.1| - 9.1e-08 31.5 0.0 5.1e-07 29.0 0.0 1.9 1 1 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|119719171|ref|YP_919666.1| - 4.8e-07 30.2 0.0 6.1e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Miro-like protein UPF0079 PF02367.12 gi|119719171|ref|YP_919666.1| - 0.0001 21.9 0.1 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|119719171|ref|YP_919666.1| - 0.0032 18.2 0.0 0.0041 17.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|119719171|ref|YP_919666.1| - 0.0072 15.2 0.1 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|119719171|ref|YP_919666.1| - 0.025 14.3 0.1 0.046 13.4 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA PF00004.24 gi|119719171|ref|YP_919666.1| - 0.034 14.3 0.0 0.25 11.5 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|119719171|ref|YP_919666.1| - 0.04 13.3 0.1 0.25 10.8 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_28 PF13521.1 gi|119719171|ref|YP_919666.1| - 0.041 13.8 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119719171|ref|YP_919666.1| - 0.041 13.7 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|119719171|ref|YP_919666.1| - 0.045 13.7 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|119719171|ref|YP_919666.1| - 0.047 14.0 0.0 0.081 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119719171|ref|YP_919666.1| - 0.069 12.8 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|119719171|ref|YP_919666.1| - 0.076 12.9 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain Septin PF00735.13 gi|119719171|ref|YP_919666.1| - 0.1 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Septin Ras PF00071.17 gi|119719171|ref|YP_919666.1| - 0.16 11.3 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Ras family Robl_LC7 PF03259.12 gi|119719172|ref|YP_919667.1| - 1.8e-11 43.4 0.0 2.3e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain ACC_epsilon PF13822.1 gi|119719172|ref|YP_919667.1| - 0.03 14.6 0.5 0.047 14.0 0.4 1.3 1 0 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit Aminotran_1_2 PF00155.16 gi|119719173|ref|YP_919668.1| - 1.4e-51 175.6 0.0 1.5e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|119719173|ref|YP_919668.1| - 6.5e-09 34.9 0.0 9.5e-09 34.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|119719173|ref|YP_919668.1| - 2.2e-08 33.5 0.0 3.1e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|119719173|ref|YP_919668.1| - 8.7e-06 24.2 0.0 1.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|119719173|ref|YP_919668.1| - 6e-05 22.3 0.0 8.5e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_MocR PF12897.2 gi|119719173|ref|YP_919668.1| - 0.0001 21.0 0.0 0.00014 20.5 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Trigger_N PF05697.8 gi|119719173|ref|YP_919668.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) Ribosomal_S11 PF00411.14 gi|119719175|ref|YP_919670.1| - 6e-38 129.4 0.0 7.8e-38 129.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|119719176|ref|YP_919671.1| - 6.3e-17 60.7 0.3 6.3e-17 60.7 0.2 2.0 3 0 0 3 3 3 1 S4 domain Ribosomal_S4 PF00163.14 gi|119719176|ref|YP_919671.1| - 3.4e-05 24.1 0.3 6.9e-05 23.1 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|119719177|ref|YP_919672.1| - 3.6e-31 107.7 0.0 4.4e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|119719177|ref|YP_919672.1| - 0.052 12.0 0.0 0.065 11.7 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HHH PF00633.18 gi|119719177|ref|YP_919672.1| - 0.053 13.2 0.2 0.15 11.8 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|119719177|ref|YP_919672.1| - 0.092 12.7 0.0 0.18 11.8 0.0 1.5 1 1 0 1 1 1 0 Helix-hairpin-helix motif HHH_4 PF14490.1 gi|119719177|ref|YP_919672.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix containing domain Crust_neuro_H PF03858.8 gi|119719180|ref|YP_919675.1| - 0.45 11.1 2.2 1.8 9.1 0.2 2.2 2 0 0 2 2 2 0 Crustacean neurohormone H MR_MLE_N PF02746.11 gi|119719181|ref|YP_919676.1| - 1.8e-16 60.1 0.0 3.4e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE_C PF13378.1 gi|119719181|ref|YP_919676.1| - 1.8e-15 56.8 0.0 3.8e-15 55.8 0.0 1.5 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|119719181|ref|YP_919676.1| - 2.4e-13 50.4 0.0 7.3e-13 48.8 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DinI PF06183.8 gi|119719181|ref|YP_919676.1| - 0.00081 19.3 0.6 0.69 9.9 0.1 2.5 1 1 1 2 2 2 2 DinI-like family His_biosynth PF00977.16 gi|119719181|ref|YP_919676.1| - 0.045 13.0 0.2 0.07 12.3 0.2 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein MAAL_N PF05034.8 gi|119719181|ref|YP_919676.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus DUF3195 PF11424.3 gi|119719182|ref|YP_919677.1| - 0.0014 18.7 0.0 0.0022 18.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3195) Cdc6_C PF09079.6 gi|119719183|ref|YP_919678.1| - 4.3e-18 64.8 0.0 1e-17 63.6 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|119719183|ref|YP_919678.1| - 4.5e-08 33.2 0.0 9.7e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119719183|ref|YP_919678.1| - 1.4e-05 25.1 0.1 8.4e-05 22.6 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|119719183|ref|YP_919678.1| - 5.9e-05 22.7 0.0 0.00014 21.5 0.0 1.6 1 1 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|119719183|ref|YP_919678.1| - 0.0001 22.5 0.1 0.0003 21.0 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|119719183|ref|YP_919678.1| - 0.00025 19.8 0.3 0.0016 17.2 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus Bac_DnaA PF00308.13 gi|119719183|ref|YP_919678.1| - 0.004 16.8 0.1 1.7 8.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial dnaA protein PhoH PF02562.11 gi|119719183|ref|YP_919678.1| - 0.023 13.9 0.4 0.32 10.2 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein RuvB_N PF05496.7 gi|119719183|ref|YP_919678.1| - 0.037 13.0 0.0 0.068 12.2 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NB-ARC PF00931.17 gi|119719183|ref|YP_919678.1| - 0.037 12.8 0.0 0.064 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.7 gi|119719183|ref|YP_919678.1| - 0.05 12.6 0.0 0.089 11.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.4 gi|119719183|ref|YP_919678.1| - 0.051 12.5 0.1 0.088 11.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.21 gi|119719183|ref|YP_919678.1| - 0.076 12.4 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.24 gi|119719183|ref|YP_919678.1| - 0.09 12.2 0.6 11 5.5 0.0 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA PF00004.24 gi|119719184|ref|YP_919679.1| - 5.8e-14 52.4 0.0 1.5e-13 51.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|119719184|ref|YP_919679.1| - 3.2e-12 45.9 0.6 1.2e-05 24.2 0.0 2.4 3 0 0 3 3 3 2 Rad17 cell cycle checkpoint protein DUF815 PF05673.8 gi|119719184|ref|YP_919679.1| - 8.1e-08 31.4 0.0 5e-07 28.9 0.0 2.2 3 0 0 3 3 3 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|119719184|ref|YP_919679.1| - 3.1e-07 29.6 0.0 9.2e-07 28.1 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|119719184|ref|YP_919679.1| - 4.8e-07 29.9 0.1 3.5e-05 23.9 0.0 2.9 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.8 gi|119719184|ref|YP_919679.1| - 3.5e-06 26.0 0.0 0.00033 19.4 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus DNA_pol3_delta PF06144.8 gi|119719184|ref|YP_919679.1| - 5.8e-06 25.9 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_5 PF07728.9 gi|119719184|ref|YP_919679.1| - 1.2e-05 25.0 0.1 3e-05 23.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|119719184|ref|YP_919679.1| - 3.3e-05 23.9 0.3 0.00019 21.4 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|119719184|ref|YP_919679.1| - 4.5e-05 23.3 0.0 8.7e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|119719184|ref|YP_919679.1| - 7.8e-05 21.8 0.0 0.00015 20.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|119719184|ref|YP_919679.1| - 0.0002 22.1 0.0 0.0005 20.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|119719184|ref|YP_919679.1| - 0.0011 18.9 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|119719184|ref|YP_919679.1| - 0.0048 16.7 0.1 0.035 13.9 0.0 2.4 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|119719184|ref|YP_919679.1| - 0.014 15.1 0.0 0.043 13.5 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_29 PF13555.1 gi|119719184|ref|YP_919679.1| - 0.016 14.6 0.0 0.047 13.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Bac_DnaA PF00308.13 gi|119719184|ref|YP_919679.1| - 0.019 14.6 0.0 0.14 11.8 0.0 2.3 1 1 0 1 1 1 0 Bacterial dnaA protein Arch_ATPase PF01637.13 gi|119719184|ref|YP_919679.1| - 0.026 14.2 0.1 0.085 12.5 0.0 2.0 2 1 0 2 2 2 0 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|119719184|ref|YP_919679.1| - 0.031 14.3 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|119719184|ref|YP_919679.1| - 0.033 13.7 0.0 0.068 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119719184|ref|YP_919679.1| - 0.044 14.1 0.0 0.17 12.2 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|119719184|ref|YP_919679.1| - 0.054 12.8 0.0 0.15 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.12 gi|119719184|ref|YP_919679.1| - 0.06 11.9 0.0 0.096 11.2 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase NACHT PF05729.7 gi|119719184|ref|YP_919679.1| - 0.084 12.5 0.0 9.2 5.8 0.0 2.8 1 1 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|119719184|ref|YP_919679.1| - 0.11 12.7 0.0 0.32 11.2 0.0 1.8 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|119719184|ref|YP_919679.1| - 0.14 12.3 0.0 0.35 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Rep_fac_C PF08542.6 gi|119719185|ref|YP_919680.1| - 4.2e-19 68.3 0.3 1.3e-18 66.7 0.0 1.9 2 0 0 2 2 2 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|119719185|ref|YP_919680.1| - 7.7e-17 61.4 0.0 2.3e-14 53.4 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|119719185|ref|YP_919680.1| - 8.9e-15 55.0 0.0 2.3e-14 53.7 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|119719185|ref|YP_919680.1| - 1.1e-10 40.8 0.0 9.1e-06 24.6 0.0 2.4 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|119719185|ref|YP_919680.1| - 1.3e-08 35.0 0.2 0.0052 16.9 0.0 3.0 2 1 1 3 3 3 2 AAA domain RuvB_N PF05496.7 gi|119719185|ref|YP_919680.1| - 3e-08 32.9 0.0 6.9e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|119719185|ref|YP_919680.1| - 2e-07 30.9 0.0 2.9e-06 27.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|119719185|ref|YP_919680.1| - 4.1e-06 26.9 1.5 0.0013 18.7 0.0 3.2 2 2 1 3 3 3 1 AAA ATPase domain TIP49 PF06068.8 gi|119719185|ref|YP_919680.1| - 6.2e-05 21.8 0.0 0.0031 16.2 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus AAA_19 PF13245.1 gi|119719185|ref|YP_919680.1| - 6.6e-05 22.5 0.1 0.00024 20.7 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_25 PF13481.1 gi|119719185|ref|YP_919680.1| - 8.5e-05 22.0 0.3 0.00031 20.2 0.1 2.0 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|119719185|ref|YP_919680.1| - 0.00016 21.9 0.0 0.00066 19.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|119719185|ref|YP_919680.1| - 0.00028 20.7 0.0 0.0012 18.7 0.0 1.9 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|119719185|ref|YP_919680.1| - 0.00033 19.9 0.0 0.073 12.2 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_3 PF07726.6 gi|119719185|ref|YP_919680.1| - 0.00035 20.1 0.0 0.00058 19.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.8 gi|119719185|ref|YP_919680.1| - 0.00037 20.0 0.0 0.017 14.6 0.0 3.0 3 1 0 4 4 4 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.12 gi|119719185|ref|YP_919680.1| - 0.00067 19.1 0.1 0.0032 16.9 0.0 2.2 2 1 0 2 2 2 1 IstB-like ATP binding protein DEAD PF00270.24 gi|119719185|ref|YP_919680.1| - 0.0015 18.0 0.1 0.47 9.9 0.0 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase Sigma54_activ_2 PF14532.1 gi|119719185|ref|YP_919680.1| - 0.0015 18.5 0.0 0.013 15.5 0.0 2.4 2 1 0 2 2 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|119719185|ref|YP_919680.1| - 0.0017 18.2 0.0 0.0045 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|119719185|ref|YP_919680.1| - 0.0017 17.9 0.0 0.0087 15.6 0.0 1.9 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|119719185|ref|YP_919680.1| - 0.003 16.7 0.0 0.03 13.4 0.0 2.2 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|119719185|ref|YP_919680.1| - 0.0035 16.8 0.0 0.0073 15.8 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family SNF2_N PF00176.18 gi|119719185|ref|YP_919680.1| - 0.0038 16.0 0.0 1.2 7.9 0.0 2.2 2 0 0 2 2 2 2 SNF2 family N-terminal domain AAA_10 PF12846.2 gi|119719185|ref|YP_919680.1| - 0.0042 16.5 0.0 1.6 8.0 0.0 2.4 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|119719185|ref|YP_919680.1| - 0.0065 17.2 0.3 0.015 16.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|119719185|ref|YP_919680.1| - 0.0079 15.9 0.1 0.041 13.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|119719185|ref|YP_919680.1| - 0.011 14.6 0.0 0.028 13.3 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|119719185|ref|YP_919680.1| - 0.017 14.7 0.1 0.11 11.9 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|119719185|ref|YP_919680.1| - 0.017 15.0 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|119719185|ref|YP_919680.1| - 0.025 13.5 0.0 0.095 11.6 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|119719185|ref|YP_919680.1| - 0.027 13.5 0.0 0.059 12.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.17 gi|119719185|ref|YP_919680.1| - 0.029 14.5 0.0 0.097 12.8 0.0 1.9 2 0 0 2 2 1 0 RNA helicase DUF815 PF05673.8 gi|119719185|ref|YP_919680.1| - 0.037 12.9 0.0 0.062 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) KTI12 PF08433.5 gi|119719185|ref|YP_919680.1| - 0.053 12.7 0.0 0.087 12.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ArgK PF03308.11 gi|119719185|ref|YP_919680.1| - 0.076 11.7 0.0 0.69 8.6 0.0 2.1 1 1 1 2 2 2 0 ArgK protein Viral_helicase1 PF01443.13 gi|119719185|ref|YP_919680.1| - 0.14 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Ribosomal_S7 PF00177.16 gi|119719186|ref|YP_919681.1| - 2.2e-45 153.8 0.1 2.6e-45 153.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e RtcB PF01139.12 gi|119719187|ref|YP_919682.1| - 1.2e-152 508.7 0.0 1.4e-152 508.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.10 gi|119719187|ref|YP_919682.1| - 0.066 13.0 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Complex 1 protein (LYR family) HTH_20 PF12840.2 gi|119719188|ref|YP_919683.1| - 3.9e-07 29.7 0.1 7e-07 28.9 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|119719188|ref|YP_919683.1| - 6.8e-05 22.3 1.9 0.016 14.8 0.1 2.7 3 0 0 3 3 3 1 Homeodomain-like domain HTH_24 PF13412.1 gi|119719188|ref|YP_919683.1| - 7.9e-05 21.9 0.3 0.00022 20.5 0.2 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|119719188|ref|YP_919683.1| - 8.4e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|119719188|ref|YP_919683.1| - 0.00042 19.9 0.7 0.0009 18.8 0.5 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|119719188|ref|YP_919683.1| - 0.00096 18.7 0.9 0.0016 18.0 0.2 1.7 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|119719188|ref|YP_919683.1| - 0.0016 18.1 0.1 0.006 16.2 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.1 gi|119719188|ref|YP_919683.1| - 0.002 18.1 1.7 0.065 13.2 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|119719188|ref|YP_919683.1| - 0.0021 17.9 0.2 2.7 7.9 0.0 2.4 2 1 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|119719188|ref|YP_919683.1| - 0.0024 17.4 0.1 0.0067 16.0 0.0 1.9 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|119719188|ref|YP_919683.1| - 0.0028 17.7 0.5 0.01 15.9 0.1 1.9 1 1 0 2 2 2 1 Winged helix-turn helix HTH_38 PF13936.1 gi|119719188|ref|YP_919683.1| - 0.0033 16.9 0.3 0.0099 15.4 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|119719188|ref|YP_919683.1| - 0.024 14.3 0.1 0.045 13.4 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SpoIIID PF12116.3 gi|119719188|ref|YP_919683.1| - 0.026 14.4 0.1 0.048 13.6 0.1 1.4 1 1 0 1 1 1 0 Stage III sporulation protein D HTH_7 PF02796.10 gi|119719188|ref|YP_919683.1| - 0.029 14.2 0.3 0.24 11.2 0.1 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase RPA_C PF08784.6 gi|119719188|ref|YP_919683.1| - 0.03 14.7 0.0 0.041 14.3 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HTH_AsnC-type PF13404.1 gi|119719188|ref|YP_919683.1| - 0.051 13.1 0.1 0.31 10.6 0.1 2.2 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain FeoC PF09012.5 gi|119719188|ref|YP_919683.1| - 0.059 13.0 0.1 0.13 11.9 0.0 1.6 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_34 PF13601.1 gi|119719188|ref|YP_919683.1| - 0.06 13.3 0.0 0.14 12.1 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF3253 PF11625.3 gi|119719188|ref|YP_919683.1| - 0.086 12.7 0.2 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) HTH_DeoR PF08220.7 gi|119719188|ref|YP_919683.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Archease PF01951.11 gi|119719189|ref|YP_919684.1| - 4.9e-40 136.6 0.0 5.6e-40 136.4 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|119719189|ref|YP_919684.1| - 0.11 12.1 0.2 36 4.1 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0150) FMN_dh PF01070.13 gi|119719190|ref|YP_919685.1| - 3.7e-29 101.6 0.0 2.3e-18 66.2 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase PcrB PF01884.12 gi|119719190|ref|YP_919685.1| - 0.00021 20.6 0.0 0.0057 15.9 0.0 2.8 3 0 0 3 3 3 1 PcrB family IMPDH PF00478.20 gi|119719190|ref|YP_919685.1| - 0.00033 19.6 2.7 0.0023 16.9 0.1 3.1 3 1 0 4 4 4 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|119719190|ref|YP_919685.1| - 0.002 17.0 3.9 0.0037 16.2 0.1 2.4 2 1 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|119719190|ref|YP_919685.1| - 0.0026 16.7 0.1 0.006 15.5 0.0 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Memo PF01875.12 gi|119719191|ref|YP_919686.1| - 8.4e-79 264.3 0.0 9.7e-79 264.0 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|119719191|ref|YP_919686.1| - 2.5e-07 29.9 0.1 1.1e-06 27.8 0.1 1.8 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|119719192|ref|YP_919687.1| - 1.5e-37 128.8 0.0 7.3e-20 71.0 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Dak1 PF02733.12 gi|119719192|ref|YP_919687.1| - 0.09 11.3 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Dak1 domain RNA_pol_N PF01194.12 gi|119719194|ref|YP_919689.1| - 3.5e-31 107.0 0.3 4.5e-31 106.6 0.2 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|119719194|ref|YP_919689.1| - 0.079 13.0 0.1 0.14 12.2 0.1 1.4 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) DUF572 PF04502.8 gi|119719194|ref|YP_919689.1| - 0.16 11.1 0.1 0.2 10.8 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) Ribosomal_S9 PF00380.14 gi|119719195|ref|YP_919690.1| - 1.3e-34 119.0 0.5 1.4e-34 118.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 PBCV_basic_adap PF08789.5 gi|119719195|ref|YP_919690.1| - 0.05 13.2 1.4 0.13 11.9 1.0 1.6 1 0 0 1 1 1 0 PBCV-specific basic adaptor domain Ribosomal_L13 PF00572.13 gi|119719196|ref|YP_919691.1| - 2e-30 105.4 0.1 2.4e-30 105.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|119719197|ref|YP_919692.1| - 6.4e-11 42.7 0.0 8e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 DUF3006 PF11213.3 gi|119719197|ref|YP_919692.1| - 0.049 13.3 0.0 0.096 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) RNA_pol_A_bac PF01000.21 gi|119719198|ref|YP_919693.1| - 1.8e-21 76.3 0.0 3e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|119719198|ref|YP_919693.1| - 1e-14 53.3 0.0 1.7e-14 52.7 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_15 PF13459.1 gi|119719198|ref|YP_919693.1| - 0.0077 16.7 0.3 0.035 14.6 0.2 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF4325 PF14213.1 gi|119719198|ref|YP_919693.1| - 0.11 12.2 0.0 0.52 9.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4325) Ribosom_S12_S23 PF00164.20 gi|119719199|ref|YP_919694.1| - 3.6e-39 132.9 0.3 4.2e-39 132.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|119719200|ref|YP_919695.1| - 3.3e-16 58.5 0.6 3.3e-10 39.3 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|119719200|ref|YP_919695.1| - 2.3e-09 36.8 1.1 9.4e-08 31.7 0.1 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|119719200|ref|YP_919695.1| - 7.3e-07 28.7 0.5 0.018 14.6 0.1 2.5 1 1 1 2 2 2 2 KH domain KH_4 PF13083.1 gi|119719200|ref|YP_919695.1| - 1.3e-06 27.9 0.0 4.4e-06 26.2 0.0 1.8 2 0 0 2 2 2 1 KH domain DUF310 PF03750.8 gi|119719200|ref|YP_919695.1| - 0.0023 18.0 0.0 0.0035 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF310) KH_3 PF13014.1 gi|119719200|ref|YP_919695.1| - 0.54 9.9 2.3 16 5.3 0.0 2.7 3 0 0 3 3 3 0 KH domain Ribosomal_L7Ae PF01248.21 gi|119719201|ref|YP_919696.1| - 1e-20 73.0 0.1 1.1e-20 72.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|119719202|ref|YP_919697.1| - 6.4e-52 176.5 0.0 8.9e-52 176.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FliG_M PF14841.1 gi|119719202|ref|YP_919697.1| - 0.026 14.5 0.1 0.51 10.3 0.0 2.6 2 0 0 2 2 2 0 FliG middle domain AATF-Che1 PF13339.1 gi|119719202|ref|YP_919697.1| - 0.038 14.1 0.0 0.12 12.4 0.0 1.8 2 1 1 3 3 3 0 Apoptosis antagonizing transcription factor DUF460 PF04312.8 gi|119719202|ref|YP_919697.1| - 0.1 12.0 0.3 2.9 7.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF460) RNA_pol_Rpb1_1 PF04997.7 gi|119719203|ref|YP_919698.1| - 2.2e-86 290.2 0.0 2.2e-85 286.9 0.0 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|119719203|ref|YP_919698.1| - 7.3e-71 237.4 0.0 1.2e-70 236.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|119719203|ref|YP_919698.1| - 1.2e-37 129.1 0.0 1.9e-37 128.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|119719203|ref|YP_919698.1| - 2.6e-30 104.3 0.0 5.8e-30 103.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|119719203|ref|YP_919698.1| - 3.6e-28 98.6 0.0 1.1e-27 96.9 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|119719203|ref|YP_919698.1| - 0.00042 19.4 0.0 0.004 16.3 0.0 2.5 2 1 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|119719203|ref|YP_919698.1| - 0.9 9.4 5.4 8.2 6.3 0.0 2.7 3 1 0 3 3 3 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|119719203|ref|YP_919698.1| - 1.9 8.4 5.3 7.1 6.6 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|119719203|ref|YP_919698.1| - 7.3 6.2 7.3 0.86 9.1 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb2_6 PF00562.23 gi|119719204|ref|YP_919699.1| - 2e-118 395.5 0.0 2.7e-118 395.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|119719204|ref|YP_919699.1| - 1.3e-60 203.7 0.0 1.9e-60 203.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|119719204|ref|YP_919699.1| - 6.1e-33 113.8 0.0 9.8e-33 113.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|119719204|ref|YP_919699.1| - 5.4e-28 97.0 0.0 1.2e-27 95.9 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|119719204|ref|YP_919699.1| - 5.6e-28 96.5 0.1 1.6e-27 95.0 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|119719204|ref|YP_919699.1| - 9.6e-19 66.9 1.3 8.6e-18 63.9 0.9 2.6 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|119719204|ref|YP_919699.1| - 2.6e-14 52.9 1.6 7e-14 51.5 1.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 YdjO PF14169.1 gi|119719204|ref|YP_919699.1| - 0.22 11.0 1.5 0.43 10.0 1.0 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO DZR PF12773.2 gi|119719204|ref|YP_919699.1| - 0.32 10.8 0.1 0.6 9.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-C4H2 PF10146.4 gi|119719204|ref|YP_919699.1| - 0.45 10.4 0.1 2.6 8.0 0.0 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein RNA_pol_Rpb5_C PF01191.14 gi|119719205|ref|YP_919700.1| - 1.7e-30 104.3 0.0 1.9e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain PASTA PF03793.14 gi|119719205|ref|YP_919700.1| - 0.0023 17.5 0.2 0.014 15.0 0.1 2.0 1 1 0 1 1 1 1 PASTA domain tRNA-synt_2b PF00587.20 gi|119719206|ref|YP_919701.1| - 4.9e-50 169.4 0.1 6.9e-50 168.9 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|119719206|ref|YP_919701.1| - 3.9e-19 68.3 0.1 7.9e-19 67.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|119719206|ref|YP_919701.1| - 0.0071 15.5 1.1 3 7.1 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DUF678 PF05077.7 gi|119719206|ref|YP_919701.1| - 0.0076 16.2 0.4 0.03 14.2 0.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF678) zinc_ribbon_2 PF13240.1 gi|119719206|ref|YP_919701.1| - 0.015 14.7 1.1 3.8 7.1 0.0 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719206|ref|YP_919701.1| - 0.019 14.6 0.4 2.3 7.9 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|119719206|ref|YP_919701.1| - 0.027 14.0 0.6 2.7 7.6 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|119719206|ref|YP_919701.1| - 0.058 13.3 0.1 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|119719206|ref|YP_919701.1| - 0.088 12.5 1.2 5.5 6.8 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|119719206|ref|YP_919701.1| - 0.12 12.1 0.2 0.32 10.8 0.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|119719206|ref|YP_919701.1| - 0.23 10.9 1.2 3.3 7.2 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Rad50_zn_hook PF04423.9 gi|119719206|ref|YP_919701.1| - 0.36 10.3 1.6 0.45 10.0 0.0 2.0 3 0 0 3 3 2 0 Rad50 zinc hook motif zf-IS66 PF13005.2 gi|119719206|ref|YP_919701.1| - 0.48 10.4 2.3 29 4.7 0.2 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.1 gi|119719206|ref|YP_919701.1| - 0.63 10.3 3.1 2.4 8.5 0.1 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar RNA_pol_Rpb6 PF01192.17 gi|119719208|ref|YP_919703.1| - 5.6e-15 54.8 0.0 6.9e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.19 gi|119719209|ref|YP_919704.1| - 2.9e-173 576.9 8.9 3.3e-173 576.7 6.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peptidase_S24 PF00717.18 gi|119719210|ref|YP_919705.1| - 4.7e-09 35.7 0.3 6.3e-09 35.3 0.2 1.2 1 0 0 1 1 1 1 Peptidase S24-like TBP PF00352.16 gi|119719211|ref|YP_919706.1| - 2.8e-53 177.2 1.3 4.4e-37 125.3 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|119719211|ref|YP_919706.1| - 7.3e-05 22.7 0.0 0.026 14.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CagE_TrbE_VirB PF03135.9 gi|119719211|ref|YP_919706.1| - 0.0035 17.1 0.6 1.7 8.3 0.1 2.2 2 0 0 2 2 2 2 CagE, TrbE, VirB family, component of type IV transporter system DUF2703 PF10865.3 gi|119719211|ref|YP_919706.1| - 0.0043 16.9 0.7 1.9 8.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2703) DUF77 PF01910.12 gi|119719211|ref|YP_919706.1| - 0.016 14.8 1.9 1.7 8.3 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function DUF77 DUF155 PF02582.9 gi|119719211|ref|YP_919706.1| - 0.024 14.5 0.2 10 6.0 0.0 2.6 2 1 0 2 2 2 0 Uncharacterised ACR, YagE family COG1723 DUF1697 PF08002.6 gi|119719211|ref|YP_919706.1| - 0.05 13.6 0.1 6.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1697) Methyltransf_18 PF12847.2 gi|119719211|ref|YP_919706.1| - 0.061 13.9 0.0 0.61 10.6 0.0 1.9 1 1 1 2 2 2 0 Methyltransferase domain Histone_HNS PF00816.16 gi|119719211|ref|YP_919706.1| - 0.55 10.7 2.0 6 7.4 0.1 2.1 2 0 0 2 2 2 0 H-NS histone family Acetyltransf_1 PF00583.19 gi|119719212|ref|YP_919707.1| - 5.8e-20 71.1 0.3 8.4e-20 70.6 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|119719212|ref|YP_919707.1| - 7.8e-11 42.1 0.0 1.1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|119719212|ref|YP_919707.1| - 7.9e-11 41.9 0.4 1.2e-10 41.3 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|119719212|ref|YP_919707.1| - 8e-09 35.5 0.1 1.1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|119719212|ref|YP_919707.1| - 2.5e-08 33.5 0.0 3.9e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|119719212|ref|YP_919707.1| - 1.5e-07 31.5 0.2 2e-07 31.0 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|119719212|ref|YP_919707.1| - 1.6e-07 31.6 0.1 1.8e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|119719212|ref|YP_919707.1| - 0.0012 18.7 0.2 0.0021 17.9 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain ANF_receptor PF01094.23 gi|119719213|ref|YP_919708.1| - 2.2e-42 145.0 0.0 2.7e-42 144.8 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.1 gi|119719213|ref|YP_919708.1| - 6e-41 140.9 2.4 7.3e-41 140.6 1.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.8 gi|119719213|ref|YP_919708.1| - 1.6e-08 33.5 0.1 2.1e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.1 gi|119719213|ref|YP_919708.1| - 4.7e-06 25.6 0.0 0.017 13.9 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain Ribosomal_L40e PF01020.12 gi|119719214|ref|YP_919709.1| - 0.0033 16.9 8.9 0.0038 16.7 6.2 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|119719214|ref|YP_919709.1| - 0.011 15.5 1.1 0.012 15.4 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon Rpr2 PF04032.11 gi|119719214|ref|YP_919709.1| - 0.015 15.1 0.5 0.015 15.1 0.3 1.9 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain HypA PF01155.14 gi|119719214|ref|YP_919709.1| - 0.047 13.3 0.6 0.055 13.1 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DnaJ_CXXCXGXG PF00684.14 gi|119719214|ref|YP_919709.1| - 0.065 13.2 0.7 0.072 13.1 0.5 1.1 1 0 0 1 1 1 0 DnaJ central domain zf-DHHC PF01529.15 gi|119719214|ref|YP_919709.1| - 0.16 11.3 2.4 0.16 11.3 1.6 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase Fer4_2 PF12797.2 gi|119719214|ref|YP_919709.1| - 0.22 11.5 1.2 4.5 7.3 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain DNA_pol_B PF00136.16 gi|119719216|ref|YP_919711.1| - 1.4e-86 291.1 1.0 1.9e-86 290.6 0.7 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|119719216|ref|YP_919711.1| - 7.8e-33 113.6 0.0 1.8e-32 112.5 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|119719216|ref|YP_919711.1| - 4.2e-07 29.7 0.0 1.1e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|119719216|ref|YP_919711.1| - 3.2e-06 27.0 0.0 9.1e-06 25.5 0.0 1.8 1 0 0 1 1 1 1 RNase_H superfamily PRA-PH PF01503.12 gi|119719216|ref|YP_919711.1| - 0.067 13.4 0.1 0.26 11.6 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase MCM_N PF14551.1 gi|119719216|ref|YP_919711.1| - 0.27 11.7 2.9 2.1 8.8 0.1 2.8 1 1 0 2 2 2 0 MCM N-terminal domain DUF371 PF04027.8 gi|119719219|ref|YP_919714.1| - 4.8e-22 78.0 0.0 5.7e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) XPG_I PF00867.13 gi|119719220|ref|YP_919715.1| - 7.4e-25 86.8 0.0 1.3e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|119719220|ref|YP_919715.1| - 6.1e-23 80.9 0.0 1.3e-22 79.9 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain AMP-binding_C_2 PF14535.1 gi|119719220|ref|YP_919715.1| - 0.033 14.2 2.4 0.17 11.9 0.1 2.7 3 0 0 3 3 3 0 AMP-binding enzyme C-terminal domain 5_3_exonuc PF01367.15 gi|119719220|ref|YP_919715.1| - 0.046 13.9 0.1 0.28 11.4 0.0 2.3 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold EAP30 PF04157.11 gi|119719221|ref|YP_919716.1| - 0.034 13.2 0.2 0.036 13.2 0.1 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family AAA PF00004.24 gi|119719222|ref|YP_919717.1| - 1.4e-100 332.6 0.0 2.4e-49 166.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|119719222|ref|YP_919717.1| - 1.5e-34 117.7 1.4 1.2e-33 114.8 0.4 3.0 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|119719222|ref|YP_919717.1| - 2.9e-16 59.2 0.0 1.1e-07 31.2 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|119719222|ref|YP_919717.1| - 2.6e-15 56.6 0.5 1e-05 25.6 0.0 4.4 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119719222|ref|YP_919717.1| - 3e-15 56.6 0.0 2.5e-06 27.5 0.0 2.7 2 0 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|119719222|ref|YP_919717.1| - 2.2e-14 52.8 2.1 6.8e-14 51.2 1.5 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|119719222|ref|YP_919717.1| - 3.3e-14 53.1 0.0 5.1e-08 33.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|119719222|ref|YP_919717.1| - 5.3e-13 48.4 1.1 1.2e-06 27.5 0.0 3.3 4 0 0 4 4 4 2 TIP49 C-terminus AAA_17 PF13207.1 gi|119719222|ref|YP_919717.1| - 6.1e-13 49.6 0.1 9.2e-06 26.4 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|119719222|ref|YP_919717.1| - 8e-12 45.1 0.0 2.1e-05 24.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|119719222|ref|YP_919717.1| - 8.6e-12 44.9 0.6 0.00021 21.0 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|119719222|ref|YP_919717.1| - 1.6e-10 40.3 0.1 0.00014 21.0 0.0 2.8 3 0 0 3 3 3 2 Zeta toxin AAA_33 PF13671.1 gi|119719222|ref|YP_919717.1| - 2.3e-10 40.5 0.0 0.00011 22.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|119719222|ref|YP_919717.1| - 1.2e-08 34.5 0.1 0.0051 16.2 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|119719222|ref|YP_919717.1| - 3e-08 33.2 1.2 0.0098 15.6 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_18 PF13238.1 gi|119719222|ref|YP_919717.1| - 3.2e-08 33.9 0.0 0.0066 16.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|119719222|ref|YP_919717.1| - 6.6e-08 32.6 0.0 0.0058 16.8 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|119719222|ref|YP_919717.1| - 1.2e-07 31.8 0.0 0.014 15.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|119719222|ref|YP_919717.1| - 1.9e-07 31.0 0.0 0.0085 15.8 0.0 3.7 2 2 1 3 3 3 2 Archaeal ATPase AAA_24 PF13479.1 gi|119719222|ref|YP_919717.1| - 3.1e-07 30.1 0.0 0.02 14.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|119719222|ref|YP_919717.1| - 4.5e-07 29.2 0.5 0.029 13.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|119719222|ref|YP_919717.1| - 6.1e-07 29.0 8.9 0.31 10.4 0.1 4.3 2 2 2 4 4 4 3 AAA domain Sigma54_activat PF00158.21 gi|119719222|ref|YP_919717.1| - 8.5e-07 28.6 0.1 0.063 12.7 0.0 3.6 2 2 1 3 3 3 2 Sigma-54 interaction domain UFD1 PF03152.9 gi|119719222|ref|YP_919717.1| - 3.5e-06 26.2 0.0 4.6e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin fusion degradation protein UFD1 DUF815 PF05673.8 gi|119719222|ref|YP_919717.1| - 1.3e-05 24.3 0.0 0.091 11.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|119719222|ref|YP_919717.1| - 1.6e-05 24.9 0.0 0.23 11.4 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|119719222|ref|YP_919717.1| - 2.2e-05 23.4 0.1 0.092 11.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|119719222|ref|YP_919717.1| - 2.7e-05 23.9 8.4 1.9 8.1 0.0 6.2 4 2 2 6 6 6 1 NTPase AAA_3 PF07726.6 gi|119719222|ref|YP_919717.1| - 3.2e-05 23.5 0.0 0.31 10.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|119719222|ref|YP_919717.1| - 3.9e-05 22.9 0.1 0.23 10.6 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.22 gi|119719222|ref|YP_919717.1| - 5.4e-05 23.5 0.0 0.46 10.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|119719222|ref|YP_919717.1| - 8.5e-05 22.2 0.4 1.1 8.9 0.0 3.4 4 0 0 4 4 4 2 NACHT domain DUF2075 PF09848.4 gi|119719222|ref|YP_919717.1| - 0.00015 20.8 0.0 0.33 9.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|119719222|ref|YP_919717.1| - 0.00016 20.6 0.0 0.3 9.8 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Bac_DnaA PF00308.13 gi|119719222|ref|YP_919717.1| - 0.00018 21.2 0.0 0.42 10.2 0.0 3.1 2 2 0 2 2 2 1 Bacterial dnaA protein KaiC PF06745.8 gi|119719222|ref|YP_919717.1| - 0.00023 20.3 4.7 0.33 10.0 0.0 3.8 3 2 1 4 4 3 2 KaiC AAA_11 PF13086.1 gi|119719222|ref|YP_919717.1| - 0.0019 17.8 0.0 1.5 8.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain Molydop_binding PF01568.16 gi|119719222|ref|YP_919717.1| - 0.002 17.9 0.4 0.015 15.0 0.1 2.4 2 1 1 3 3 2 1 Molydopterin dinucleotide binding domain T2SE PF00437.15 gi|119719222|ref|YP_919717.1| - 0.0035 16.2 0.0 2.2 7.1 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|119719222|ref|YP_919717.1| - 0.0036 16.9 0.0 3.1 7.4 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|119719222|ref|YP_919717.1| - 0.0044 16.6 0.0 3.5 7.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|119719222|ref|YP_919717.1| - 0.0072 15.5 0.2 4.2 6.4 0.0 2.6 3 0 0 3 3 2 0 Isopentenyl transferase Vps4_C PF09336.5 gi|119719222|ref|YP_919717.1| - 0.0077 16.1 0.0 0.49 10.3 0.0 3.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain ATP-synt_ab PF00006.20 gi|119719222|ref|YP_919717.1| - 0.009 15.5 0.0 3.3 7.1 0.0 2.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.17 gi|119719222|ref|YP_919717.1| - 0.0098 15.7 0.0 2.1 8.1 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase ResIII PF04851.10 gi|119719222|ref|YP_919717.1| - 0.012 15.4 0.0 4.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit MCM PF00493.18 gi|119719222|ref|YP_919717.1| - 0.027 13.2 0.0 16 4.1 0.0 3.2 3 0 0 3 3 3 0 MCM2/3/5 family Viral_helicase1 PF01443.13 gi|119719222|ref|YP_919717.1| - 0.03 13.8 0.0 0.85 9.0 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Guanylate_kin PF00625.16 gi|119719222|ref|YP_919717.1| - 0.035 13.5 0.1 33 3.8 0.0 3.6 2 2 1 3 3 3 0 Guanylate kinase AFG1_ATPase PF03969.11 gi|119719222|ref|YP_919717.1| - 0.038 12.7 0.0 5.3 5.7 0.0 2.8 3 1 1 4 4 2 0 AFG1-like ATPase CPT PF07931.7 gi|119719222|ref|YP_919717.1| - 0.04 13.5 0.0 7.5 6.1 0.0 2.7 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein DAP3 PF10236.4 gi|119719222|ref|YP_919717.1| - 0.045 12.6 0.0 5.9 5.7 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 cobW PF02492.14 gi|119719222|ref|YP_919717.1| - 0.062 12.7 0.0 9.2 5.6 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|119719222|ref|YP_919717.1| - 0.12 11.9 0.0 18 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|119719222|ref|YP_919717.1| - 0.13 12.5 0.6 23 5.2 0.0 2.7 3 0 0 3 3 2 0 AAA domain PduV-EutP PF10662.4 gi|119719222|ref|YP_919717.1| - 0.13 11.7 0.0 12 5.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|119719222|ref|YP_919717.1| - 0.14 11.5 0.9 21 4.4 0.1 3.6 2 2 0 2 2 2 0 AAA-like domain AAA_21 PF13304.1 gi|119719222|ref|YP_919717.1| - 0.5 10.2 3.5 26 4.6 0.3 3.4 2 2 0 3 3 3 0 AAA domain FKBP_C PF00254.23 gi|119719223|ref|YP_919718.1| - 2.1e-10 40.4 0.5 8.4e-10 38.5 0.2 2.2 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Proteasome PF00227.21 gi|119719224|ref|YP_919719.1| - 3.2e-55 186.3 0.1 3.6e-55 186.2 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Spindle_Spc25 PF08234.7 gi|119719225|ref|YP_919720.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromosome segregation protein Spc25 Beta-Casp PF10996.3 gi|119719226|ref|YP_919721.1| - 8.1e-29 100.1 0.0 1.7e-28 99.0 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|119719226|ref|YP_919721.1| - 2.7e-24 85.8 0.5 6e-24 84.7 0.4 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|119719226|ref|YP_919721.1| - 2.7e-13 49.5 0.4 3.9e-12 45.7 0.0 3.2 5 0 0 5 5 5 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|119719226|ref|YP_919721.1| - 2.5e-10 40.2 0.0 5.1e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|119719226|ref|YP_919721.1| - 0.0012 18.5 0.0 0.0031 17.2 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|119719226|ref|YP_919721.1| - 0.021 14.3 2.2 0.023 14.2 0.3 2.0 2 0 0 2 2 2 0 KH domain PUA PF01472.15 gi|119719227|ref|YP_919722.1| - 3e-20 71.7 0.5 4.6e-20 71.1 0.3 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|119719227|ref|YP_919722.1| - 0.00034 20.3 0.5 0.00073 19.2 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) tRNA_int_endo_N PF02778.9 gi|119719228|ref|YP_919723.1| - 6.4e-17 60.8 0.4 1.1e-16 60.1 0.3 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_endo PF01974.12 gi|119719228|ref|YP_919723.1| - 1.8e-11 43.6 0.0 5.3e-11 42.1 0.0 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain Sen15 PF09631.5 gi|119719228|ref|YP_919723.1| - 0.0094 16.1 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 1 Sen15 protein MoCF_biosynth PF00994.19 gi|119719229|ref|YP_919724.1| - 1.2e-28 99.3 0.0 1.4e-28 99.1 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF3487 PF11990.3 gi|119719229|ref|YP_919724.1| - 0.026 13.9 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) MoaC PF01967.16 gi|119719230|ref|YP_919725.1| - 4e-53 178.7 2.2 4.5e-53 178.5 1.5 1.0 1 0 0 1 1 1 1 MoaC family DUF4159 PF13709.1 gi|119719230|ref|YP_919725.1| - 0.023 13.7 0.0 0.03 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) MoaE PF02391.12 gi|119719231|ref|YP_919726.1| - 6.8e-18 64.5 0.4 7.8e-18 64.3 0.3 1.0 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|119719232|ref|YP_919727.1| - 3.2e-10 40.3 0.1 3.6e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|119719232|ref|YP_919727.1| - 0.0081 15.6 0.0 0.013 15.0 0.0 1.3 1 1 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.16 gi|119719232|ref|YP_919727.1| - 0.064 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 TGS domain Peptidase_M20 PF01546.23 gi|119719233|ref|YP_919728.1| - 1.8e-28 99.3 0.2 3.3e-28 98.4 0.1 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|119719233|ref|YP_919728.1| - 3.6e-20 71.7 0.0 4.6e-19 68.2 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|119719233|ref|YP_919728.1| - 0.00018 20.3 0.0 0.0034 16.1 0.0 2.7 3 1 1 4 4 4 1 M42 glutamyl aminopeptidase EKR PF10371.4 gi|119719233|ref|YP_919728.1| - 0.12 12.0 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function Pribosyltran_N PF13793.1 gi|119719234|ref|YP_919729.1| - 3.3e-22 78.3 0.1 1.5e-18 66.6 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|119719234|ref|YP_919729.1| - 1.4e-11 44.2 1.1 3.2e-11 43.0 0.8 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|119719234|ref|YP_919729.1| - 3.7e-10 39.8 1.2 2.9e-09 36.9 0.4 2.1 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|119719234|ref|YP_919729.1| - 0.0079 15.5 0.1 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|119719234|ref|YP_919729.1| - 0.045 12.9 0.1 0.075 12.2 0.1 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Sua5_yciO_yrdC PF01300.13 gi|119719235|ref|YP_919730.1| - 3e-49 166.6 0.0 4.5e-49 166.1 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|119719235|ref|YP_919730.1| - 2.9e-32 109.7 9.4 5.7e-18 64.0 1.0 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|119719235|ref|YP_919730.1| - 4.1e-24 84.4 0.0 7.4e-24 83.6 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|119719235|ref|YP_919730.1| - 0.0076 15.7 0.0 3.6 7.0 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family Peptidase_M28 PF04389.12 gi|119719236|ref|YP_919731.1| - 2.1e-30 105.7 0.0 3e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|119719236|ref|YP_919731.1| - 3.5e-08 33.1 0.1 5.6e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|119719236|ref|YP_919731.1| - 0.0044 15.8 0.0 0.033 12.9 0.0 2.1 1 1 1 2 2 2 1 M42 glutamyl aminopeptidase ThiI PF02568.9 gi|119719237|ref|YP_919732.1| - 1.8e-58 197.2 0.0 2.5e-58 196.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|119719237|ref|YP_919732.1| - 4.3e-21 75.3 0.0 1.1e-20 74.0 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.15 gi|119719237|ref|YP_919732.1| - 3.4e-15 56.3 0.0 1.4e-14 54.4 0.0 2.0 2 0 0 2 2 2 1 Rhodanese-like domain QueC PF06508.8 gi|119719237|ref|YP_919732.1| - 6.8e-07 28.7 0.1 0.004 16.4 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|119719237|ref|YP_919732.1| - 0.0017 17.7 0.3 0.0034 16.7 0.2 1.5 1 0 0 1 1 1 1 ATP-binding region tRNA_Me_trans PF03054.11 gi|119719237|ref|YP_919732.1| - 0.0054 15.3 0.1 0.0092 14.5 0.1 1.3 1 0 0 1 1 1 1 tRNA methyl transferase OCC1 PF15506.1 gi|119719237|ref|YP_919732.1| - 0.11 12.3 1.7 0.5 10.2 0.0 2.3 2 0 0 2 2 2 0 OCC1 family ATP_bind_3 PF01171.15 gi|119719237|ref|YP_919732.1| - 0.17 11.3 0.0 2.6 7.5 0.0 2.1 2 0 0 2 2 2 0 PP-loop family Ribosomal_L35Ae PF01247.13 gi|119719238|ref|YP_919733.1| - 6.1e-18 64.3 1.0 7.2e-18 64.1 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.13 gi|119719238|ref|YP_919733.1| - 0.0059 16.5 0.1 0.53 10.2 0.0 2.2 2 0 0 2 2 2 2 RimM N-terminal domain DUF4404 PF14357.1 gi|119719240|ref|YP_919735.1| - 0.071 13.5 0.3 0.08 13.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) ASCH PF04266.9 gi|119719241|ref|YP_919736.1| - 8.2e-16 58.2 0.0 1.4e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 ASCH domain tRNA-synt_1 PF00133.17 gi|119719242|ref|YP_919737.1| - 6.8e-150 499.9 0.0 6e-149 496.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|119719242|ref|YP_919737.1| - 1.5e-33 115.7 0.1 2.8e-33 114.8 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|119719242|ref|YP_919737.1| - 2.3e-23 82.5 0.0 9.4e-16 57.4 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|119719242|ref|YP_919737.1| - 5.7e-10 38.7 0.1 1.9e-08 33.8 0.1 2.5 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|119719242|ref|YP_919737.1| - 3.4e-05 23.1 0.0 0.021 13.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|119719242|ref|YP_919737.1| - 0.0047 16.7 1.4 0.16 11.8 0.1 3.0 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1f PF01921.13 gi|119719242|ref|YP_919737.1| - 0.011 14.4 0.0 3.4 6.2 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) HypA PF01155.14 gi|119719242|ref|YP_919737.1| - 0.025 14.2 0.1 0.64 9.7 0.0 2.8 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|119719242|ref|YP_919737.1| - 0.15 12.4 3.5 16 5.8 0.2 3.6 2 1 0 3 3 3 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|119719242|ref|YP_919737.1| - 0.56 9.5 6.1 0.78 9.1 0.2 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|119719242|ref|YP_919737.1| - 0.89 9.0 4.7 33 4.0 0.0 3.4 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|119719242|ref|YP_919737.1| - 1.2 8.4 10.4 0.18 11.0 1.9 3.1 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119719242|ref|YP_919737.1| - 1.5 8.4 8.9 2.8 7.5 0.5 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|119719242|ref|YP_919737.1| - 1.7 8.1 4.9 1.3 8.5 0.2 2.7 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_5 PF13719.1 gi|119719242|ref|YP_919737.1| - 3.7 7.2 10.5 4.6 6.9 0.1 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719242|ref|YP_919737.1| - 3.7 7.3 10.3 7.3 6.3 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain Thioredoxin_3 PF13192.1 gi|119719243|ref|YP_919738.1| - 3.5e-26 90.8 0.0 4.8e-18 64.7 0.0 2.4 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.19 gi|119719243|ref|YP_919738.1| - 7.4e-07 29.0 0.2 0.0016 18.3 0.0 3.0 3 0 0 3 3 3 2 Glutaredoxin Thioredoxin PF00085.15 gi|119719243|ref|YP_919738.1| - 6.5e-05 22.5 0.0 0.0061 16.2 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_9 PF14595.1 gi|119719243|ref|YP_919738.1| - 0.00012 21.6 0.0 0.00026 20.5 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|119719243|ref|YP_919738.1| - 0.17 11.8 0.7 13 5.7 0.0 2.7 2 1 1 3 3 3 0 Thioredoxin Thioredoxin_2 PF13098.1 gi|119719243|ref|YP_919738.1| - 0.32 11.1 5.1 12 6.1 0.9 3.5 2 2 0 2 2 2 0 Thioredoxin-like domain Rib_5-P_isom_A PF06026.9 gi|119719244|ref|YP_919739.1| - 1.2e-44 151.7 0.0 1.4e-44 151.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|119719244|ref|YP_919739.1| - 7.8e-06 25.6 0.1 4.2e-05 23.2 0.0 1.9 1 1 1 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|119719244|ref|YP_919739.1| - 0.036 12.9 0.1 0.092 11.6 0.0 1.6 2 0 0 2 2 2 0 Putative sugar-binding domain RNA_Me_trans PF04252.8 gi|119719246|ref|YP_919741.1| - 6e-33 113.9 0.1 7.2e-33 113.6 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase tRNA_m1G_MT PF01746.16 gi|119719246|ref|YP_919741.1| - 0.021 14.4 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase PaaX_C PF08223.6 gi|119719246|ref|YP_919741.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein C-terminal domain PK PF00224.16 gi|119719247|ref|YP_919742.1| - 1.4e-89 300.1 0.0 1.8e-89 299.8 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|119719247|ref|YP_919742.1| - 2e-21 75.7 0.0 4.1e-21 74.6 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|119719247|ref|YP_919742.1| - 0.00024 20.0 0.0 0.00068 18.5 0.0 1.7 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DEAD PF00270.24 gi|119719248|ref|YP_919743.1| - 1.7e-20 73.2 0.0 9.8e-20 70.7 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|119719248|ref|YP_919743.1| - 2.2e-09 37.0 0.1 6e-09 35.6 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|119719248|ref|YP_919743.1| - 7.1e-05 22.7 0.3 0.00015 21.6 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|119719248|ref|YP_919743.1| - 0.062 13.0 0.0 0.54 10.0 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain SNARE_assoc PF09335.6 gi|119719249|ref|YP_919744.1| - 1.4e-12 47.9 7.8 1.4e-12 47.9 5.4 2.4 2 1 1 3 3 3 1 SNARE associated Golgi protein TerY-C PF15616.1 gi|119719250|ref|YP_919745.1| - 0.00032 20.6 0.0 0.00036 20.4 0.0 1.1 1 0 0 1 1 1 1 TerY-C metal binding domain Transp_Tc5_C PF04236.10 gi|119719250|ref|YP_919745.1| - 0.045 13.9 0.2 0.066 13.4 0.2 1.2 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain Metallophos PF00149.23 gi|119719251|ref|YP_919746.1| - 4.6e-30 104.5 0.0 5.6e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|119719251|ref|YP_919746.1| - 3.4e-06 26.9 0.0 4.4e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain NRDD PF13597.1 gi|119719252|ref|YP_919747.1| - 2.1e-161 537.7 0.0 2.6e-161 537.4 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.2 gi|119719252|ref|YP_919747.1| - 0.13 12.0 0.4 0.24 11.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.3 gi|119719252|ref|YP_919747.1| - 1.5 8.8 4.9 5.5 7.0 3.4 2.0 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Succ_CoA_lig PF13607.1 gi|119719253|ref|YP_919748.1| - 4.6e-59 197.9 2.0 1.1e-56 190.2 0.2 2.7 3 0 0 3 3 3 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|119719253|ref|YP_919748.1| - 7.6e-26 90.5 0.2 2.1e-25 89.1 0.1 1.8 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|119719253|ref|YP_919748.1| - 2e-12 47.4 0.3 5.3e-12 46.0 0.2 1.8 1 0 0 1 1 1 1 CoA binding domain AlaDh_PNT_C PF01262.16 gi|119719253|ref|YP_919748.1| - 0.054 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain V_ATPase_I PF01496.14 gi|119719254|ref|YP_919749.1| - 7.3e-34 116.7 26.8 1.6e-23 82.4 0.0 4.8 3 2 0 3 3 3 2 V-type ATPase 116kDa subunit family DUF713 PF05218.9 gi|119719254|ref|YP_919749.1| - 0.38 10.4 4.0 0.48 10.1 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF713) ATP-synt_C PF00137.16 gi|119719255|ref|YP_919750.1| - 9.3e-13 47.8 14.6 9.3e-13 47.8 10.1 1.8 2 0 0 2 2 2 1 ATP synthase subunit C ATP-synt_D PF01813.12 gi|119719257|ref|YP_919752.1| - 6.8e-34 117.1 3.7 7.8e-34 116.9 2.6 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF87 PF01935.12 gi|119719257|ref|YP_919752.1| - 0.014 15.2 0.5 1.3 8.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF87 ATP-synt_ab PF00006.20 gi|119719258|ref|YP_919753.1| - 4.2e-62 209.4 0.0 6.7e-62 208.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|119719258|ref|YP_919753.1| - 1.2e-11 45.0 0.4 4e-11 43.3 0.0 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|119719258|ref|YP_919753.1| - 0.00012 22.1 0.7 0.00032 20.8 0.5 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATP-synt_ab PF00006.20 gi|119719259|ref|YP_919754.1| - 1.2e-88 296.1 0.0 1.8e-88 295.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.18 gi|119719259|ref|YP_919754.1| - 2.7e-12 46.7 4.5 9.3e-11 41.7 1.0 2.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain ATP-synt_ab_C PF00306.22 gi|119719259|ref|YP_919754.1| - 4.8e-08 33.4 0.2 9.1e-08 32.5 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain RnfC_N PF13375.1 gi|119719259|ref|YP_919754.1| - 0.0009 18.9 1.7 0.0011 18.6 0.2 1.9 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|119719259|ref|YP_919754.1| - 0.007 16.3 0.5 0.79 9.8 0.1 2.6 2 0 0 2 2 2 1 Peptidase family M23 AAA_19 PF13245.1 gi|119719259|ref|YP_919754.1| - 0.084 12.6 0.1 0.83 9.4 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain Biotin_lipoyl PF00364.17 gi|119719259|ref|YP_919754.1| - 0.23 11.1 3.6 0.89 9.2 2.3 2.2 1 1 0 1 1 1 0 Biotin-requiring enzyme Transglut_core PF01841.14 gi|119719260|ref|YP_919755.1| - 8.1e-08 32.4 0.0 1.3e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.7 gi|119719260|ref|YP_919755.1| - 0.0002 20.6 0.0 0.00033 19.9 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like domain zf-ribbon_3 PF13248.1 gi|119719261|ref|YP_919756.1| - 0.00013 21.0 1.6 0.00024 20.2 1.1 1.5 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|119719261|ref|YP_919756.1| - 0.0018 18.0 0.3 0.0028 17.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|119719261|ref|YP_919756.1| - 0.0068 15.8 4.4 0.06 12.8 0.1 2.1 1 1 1 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|119719261|ref|YP_919756.1| - 0.01 15.5 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.9 gi|119719261|ref|YP_919756.1| - 0.013 14.9 2.4 0.12 11.9 0.1 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.7 gi|119719261|ref|YP_919756.1| - 0.018 14.3 0.9 0.032 13.5 0.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-C2HC_2 PF13913.1 gi|119719261|ref|YP_919756.1| - 0.046 13.3 7.4 0.77 9.4 1.2 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Lar_restr_allev PF14354.1 gi|119719261|ref|YP_919756.1| - 0.048 13.9 1.9 6.2 7.2 0.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-FCS PF06467.9 gi|119719261|ref|YP_919756.1| - 0.064 12.9 0.7 0.29 10.8 0.0 2.0 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF329 PF03884.9 gi|119719261|ref|YP_919756.1| - 0.11 12.0 0.3 0.19 11.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF329) DUF2256 PF10013.4 gi|119719261|ref|YP_919756.1| - 0.12 12.1 1.3 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Cys_rich_CPXG PF14255.1 gi|119719261|ref|YP_919756.1| - 0.26 11.1 2.5 9.2 6.1 0.3 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG UPF0547 PF10571.4 gi|119719261|ref|YP_919756.1| - 0.27 10.9 5.1 1.9 8.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|119719261|ref|YP_919756.1| - 0.3 11.0 1.8 11 6.0 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-CHCC PF10276.4 gi|119719261|ref|YP_919756.1| - 0.35 10.7 4.2 1 9.2 0.7 2.2 1 1 1 2 2 2 0 Zinc-finger domain DUF164 PF02591.10 gi|119719261|ref|YP_919756.1| - 0.47 10.3 5.9 3.4 7.5 0.2 3.0 2 1 1 3 3 3 0 Putative zinc ribbon domain zf-Di19 PF05605.7 gi|119719261|ref|YP_919756.1| - 0.97 9.6 4.7 7.4 6.7 0.2 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding HR1 PF02185.11 gi|119719262|ref|YP_919757.1| - 0.024 14.3 0.5 0.051 13.3 0.4 1.5 1 0 0 1 1 1 0 Hr1 repeat Mut7-C PF01927.11 gi|119719262|ref|YP_919757.1| - 0.16 11.9 0.2 0.19 11.7 0.1 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain Peptidase_M48 PF01435.13 gi|119719263|ref|YP_919758.1| - 2.6e-09 36.9 0.0 4.2e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|119719263|ref|YP_919758.1| - 0.0001 21.4 0.0 0.00017 20.6 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|119719263|ref|YP_919758.1| - 0.093 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 SprT-like family CarboxypepD_reg PF13620.1 gi|119719264|ref|YP_919759.1| - 2.9e-15 56.0 10.7 1.1e-10 41.3 1.4 4.3 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|119719264|ref|YP_919759.1| - 9.3e-05 22.5 1.0 0.019 14.9 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|119719264|ref|YP_919759.1| - 0.00012 21.7 2.4 0.0052 16.5 0.3 2.9 2 0 0 2 2 2 1 Cna protein B-type domain FlgD_ig PF13860.1 gi|119719264|ref|YP_919759.1| - 0.012 15.3 0.2 0.84 9.4 0.0 3.1 2 0 0 2 2 2 0 FlgD Ig-like domain DUF4249 PF14054.1 gi|119719264|ref|YP_919759.1| - 0.017 14.5 0.3 0.031 13.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) MG1 PF11974.3 gi|119719264|ref|YP_919759.1| - 0.049 14.1 0.4 0.26 11.8 0.1 2.3 1 1 1 2 2 2 0 Alpha-2-macroglobulin MG1 domain Big_1 PF02369.11 gi|119719264|ref|YP_919759.1| - 0.081 12.8 11.4 0.072 13.0 0.9 3.8 4 1 0 4 4 4 0 Bacterial Ig-like domain (group 1) CBFD_NFYB_HMF PF00808.18 gi|119719265|ref|YP_919760.1| - 3.4e-16 59.0 0.1 4e-16 58.8 0.1 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|119719265|ref|YP_919760.1| - 5.3e-12 45.6 0.5 6.5e-12 45.4 0.3 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.12 gi|119719265|ref|YP_919760.1| - 1.4e-05 24.9 0.1 1.9e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.1 gi|119719265|ref|YP_919760.1| - 0.0006 19.9 0.1 0.00076 19.6 0.1 1.2 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-18kDa PF02269.11 gi|119719265|ref|YP_919760.1| - 0.0055 16.4 0.1 0.0071 16.1 0.0 1.2 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit CENP-X PF09415.5 gi|119719265|ref|YP_919760.1| - 0.013 15.3 0.6 0.017 14.9 0.4 1.2 1 0 0 1 1 1 0 CENP-S associating Centromere protein X TFIID-31kDa PF02291.10 gi|119719265|ref|YP_919760.1| - 0.029 14.1 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.8 gi|119719265|ref|YP_919760.1| - 0.039 13.6 0.1 0.051 13.2 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated Ribosomal_S17e PF00833.13 gi|119719266|ref|YP_919761.1| - 1.7e-23 82.6 1.3 2e-23 82.4 0.9 1.1 1 0 0 1 1 1 1 Ribosomal S17 NYD-SP28_assoc PF14775.1 gi|119719266|ref|YP_919761.1| - 0.47 10.2 2.3 0.39 10.4 0.4 1.7 2 0 0 2 2 2 0 Sperm tail C-terminal domain RNA_pol_Rpb8 PF03870.10 gi|119719267|ref|YP_919762.1| - 0.0038 17.4 0.0 0.0048 17.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb8 DUF884 PF05959.6 gi|119719268|ref|YP_919763.1| - 0.17 11.1 0.4 0.96 8.7 0.1 1.9 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF884) RNA_pol_Rpb4 PF03874.11 gi|119719269|ref|YP_919764.1| - 2.7e-17 62.8 1.8 3.7e-17 62.4 1.3 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 RBFA PF02033.13 gi|119719269|ref|YP_919764.1| - 0.057 13.4 0.1 0.09 12.8 0.1 1.4 1 0 0 1 1 1 0 Ribosome-binding factor A Integrase_Zn PF02022.14 gi|119719269|ref|YP_919764.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Integrase Zinc binding domain DUF655 PF04919.7 gi|119719270|ref|YP_919765.1| - 9.9e-49 165.4 0.4 1.1e-48 165.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|119719270|ref|YP_919765.1| - 8.6e-05 22.5 0.1 0.00034 20.6 0.0 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|119719270|ref|YP_919765.1| - 0.016 15.1 0.1 0.11 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif THUMP PF02926.12 gi|119719271|ref|YP_919766.1| - 8.2e-07 29.0 0.1 8.2e-07 29.0 0.1 2.1 3 0 0 3 3 3 1 THUMP domain DUF3614 PF12267.3 gi|119719271|ref|YP_919766.1| - 0.064 13.5 0.1 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3614) Ribosomal_L21e PF01157.13 gi|119719272|ref|YP_919767.1| - 3.3e-21 74.9 2.7 3.7e-21 74.7 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e TGT PF01702.13 gi|119719273|ref|YP_919768.1| - 3.3e-58 196.8 0.0 4.6e-58 196.3 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PAC2 PF09754.4 gi|119719274|ref|YP_919769.1| - 3e-34 118.7 0.1 3.6e-34 118.5 0.1 1.0 1 0 0 1 1 1 1 PAC2 family Ribosomal_S8e PF01201.17 gi|119719275|ref|YP_919770.1| - 1.7e-30 105.8 4.0 1.8e-30 105.7 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.12 gi|119719276|ref|YP_919771.1| - 8.3e-24 83.9 0.6 9.6e-24 83.7 0.4 1.0 1 0 0 1 1 1 1 SRP19 protein GatB_N PF02934.10 gi|119719277|ref|YP_919772.1| - 1.7e-82 276.5 0.0 2.4e-82 276.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|119719277|ref|YP_919772.1| - 8.7e-27 93.6 2.6 1.1e-26 93.2 0.7 1.9 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|119719277|ref|YP_919772.1| - 4.3e-17 62.0 0.0 3e-16 59.3 0.0 2.3 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|119719277|ref|YP_919772.1| - 1.7e-07 31.1 1.0 3.3e-07 30.2 0.7 1.5 1 0 0 1 1 1 1 Yqey-like protein Asparaginase PF00710.15 gi|119719278|ref|YP_919773.1| - 1.9e-91 306.2 0.0 2.3e-91 305.9 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Ribosomal_S30 PF04758.9 gi|119719279|ref|YP_919774.1| - 1.7e-10 40.4 0.7 2.2e-10 40.1 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 p47_phox_C PF08944.6 gi|119719279|ref|YP_919774.1| - 0.082 13.1 0.4 0.086 13.0 0.3 1.2 1 0 0 1 1 1 0 NADPH oxidase subunit p47Phox, C terminal domain Ribonucleas_3_2 PF11469.3 gi|119719280|ref|YP_919775.1| - 2.7e-48 163.1 0.1 3.1e-48 162.8 0.1 1.1 1 0 0 1 1 1 1 Ribonuclease III RNA_pol_L_2 PF13656.1 gi|119719281|ref|YP_919776.1| - 5.2e-18 64.2 0.0 7.2e-18 63.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|119719281|ref|YP_919776.1| - 2.2e-07 29.9 0.0 4.2e-07 28.9 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Methyltransf_31 PF13847.1 gi|119719282|ref|YP_919777.1| - 3.1e-10 39.8 0.0 3.6e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719282|ref|YP_919777.1| - 4.8e-09 36.7 0.0 6.1e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|119719282|ref|YP_919777.1| - 6.3e-09 35.8 0.0 7.9e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119719282|ref|YP_919777.1| - 2e-06 28.1 0.0 2.6e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|119719282|ref|YP_919777.1| - 4.5e-06 25.9 0.0 5.3e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|119719282|ref|YP_919777.1| - 7.3e-06 25.1 0.0 9.1e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase DOT1 PF08123.8 gi|119719282|ref|YP_919777.1| - 8.8e-06 25.1 0.1 0.00016 21.0 0.1 2.3 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_11 PF08241.7 gi|119719282|ref|YP_919777.1| - 2.2e-05 24.8 0.0 3.1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|119719282|ref|YP_919777.1| - 5.4e-05 22.8 0.0 7.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|119719282|ref|YP_919777.1| - 8e-05 22.2 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|119719282|ref|YP_919777.1| - 0.00015 21.0 0.0 0.00019 20.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|119719282|ref|YP_919777.1| - 0.0011 18.5 0.0 0.0021 17.6 0.0 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|119719282|ref|YP_919777.1| - 0.0022 17.7 0.0 0.0027 17.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|119719282|ref|YP_919777.1| - 0.0048 16.4 0.0 0.0067 15.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase MetW PF07021.7 gi|119719282|ref|YP_919777.1| - 0.012 14.9 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.13 gi|119719282|ref|YP_919777.1| - 0.063 12.3 0.0 0.073 12.1 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.13 gi|119719282|ref|YP_919777.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase MarR_2 PF12802.2 gi|119719283|ref|YP_919778.1| - 5.9e-09 35.4 0.0 2.1e-08 33.7 0.0 1.7 2 0 0 2 2 2 1 MarR family AsnC_trans_reg PF01037.16 gi|119719283|ref|YP_919778.1| - 1.1e-07 31.4 0.2 1.8e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|119719283|ref|YP_919778.1| - 2.5e-07 29.9 0.2 5.9e-07 28.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|119719283|ref|YP_919778.1| - 8e-05 22.3 0.1 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|119719283|ref|YP_919778.1| - 0.0007 19.2 0.5 0.0013 18.3 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|119719283|ref|YP_919778.1| - 0.00073 19.1 0.2 0.003 17.1 0.1 2.1 2 1 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|119719283|ref|YP_919778.1| - 0.00085 18.9 0.1 0.053 13.2 0.0 2.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|119719283|ref|YP_919778.1| - 0.0012 18.6 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|119719283|ref|YP_919778.1| - 0.0013 19.0 0.1 0.0029 17.8 0.1 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|119719283|ref|YP_919778.1| - 0.0051 16.8 0.5 0.013 15.5 0.0 1.8 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|119719283|ref|YP_919778.1| - 0.0081 16.2 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|119719283|ref|YP_919778.1| - 0.0081 16.2 0.0 0.031 14.3 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator HTH_10 PF04967.7 gi|119719283|ref|YP_919778.1| - 0.022 14.3 0.6 0.68 9.5 0.1 2.4 2 0 0 2 2 2 0 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|119719283|ref|YP_919778.1| - 0.059 12.9 0.6 0.24 11.0 0.4 1.9 1 1 0 1 1 1 0 LexA DNA binding domain Pkinase PF00069.20 gi|119719284|ref|YP_919779.1| - 9.9e-07 28.1 0.0 1.4e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|119719284|ref|YP_919779.1| - 1.4e-06 27.7 0.0 2.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|119719284|ref|YP_919779.1| - 0.0017 18.1 0.2 0.12 12.1 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family tRNA_NucTransf2 PF09249.6 gi|119719285|ref|YP_919780.1| - 1.7e-37 127.8 0.0 3.5e-37 126.7 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|119719285|ref|YP_919780.1| - 5.9e-09 36.1 0.0 1.9e-08 34.4 0.0 2.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|119719286|ref|YP_919781.1| - 3e-32 110.4 0.1 9.5e-19 67.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|119719286|ref|YP_919781.1| - 7.6e-16 58.1 0.0 9.4e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|119719286|ref|YP_919781.1| - 3.4e-13 49.7 0.0 9.9e-13 48.2 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|119719286|ref|YP_919781.1| - 9.6e-06 24.7 0.0 0.00058 18.9 0.0 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein B-block_TFIIIC PF04182.7 gi|119719287|ref|YP_919782.1| - 2.6e-10 39.9 0.2 3.7e-10 39.5 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC RNA_pol_Rpc34 PF05158.7 gi|119719287|ref|YP_919782.1| - 3e-08 33.2 3.1 4.6e-06 26.0 0.3 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR_2 PF12802.2 gi|119719287|ref|YP_919782.1| - 0.00026 20.6 0.2 0.00036 20.1 0.2 1.2 1 0 0 1 1 1 1 MarR family z-alpha PF02295.12 gi|119719287|ref|YP_919782.1| - 0.0011 18.6 0.2 0.0019 17.9 0.1 1.4 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain RPA_C PF08784.6 gi|119719287|ref|YP_919782.1| - 0.0017 18.7 0.0 0.0023 18.3 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal MarR PF01047.17 gi|119719287|ref|YP_919782.1| - 0.003 17.2 0.2 0.0053 16.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|119719287|ref|YP_919782.1| - 0.01 16.1 0.4 0.017 15.4 0.3 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|119719287|ref|YP_919782.1| - 0.015 14.9 0.5 0.031 13.9 0.3 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF505 PF04458.7 gi|119719287|ref|YP_919782.1| - 0.023 12.8 0.3 0.026 12.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) ATP_bind_1 PF03029.12 gi|119719288|ref|YP_919783.1| - 2.9e-62 210.3 0.1 3.3e-62 210.1 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|119719288|ref|YP_919783.1| - 2.1e-06 27.3 0.1 0.0001 21.7 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|119719288|ref|YP_919783.1| - 0.00038 21.2 0.0 0.00057 20.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|119719288|ref|YP_919783.1| - 0.0011 18.9 0.0 0.0031 17.4 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase Sigma54_activ_2 PF14532.1 gi|119719288|ref|YP_919783.1| - 0.0015 18.6 0.0 1.3 9.0 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|119719288|ref|YP_919783.1| - 0.0016 18.6 0.0 0.0041 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain Ras PF00071.17 gi|119719288|ref|YP_919783.1| - 0.0034 16.7 0.0 0.44 9.9 0.0 2.2 2 0 0 2 2 2 1 Ras family RNA_helicase PF00910.17 gi|119719288|ref|YP_919783.1| - 0.0049 17.0 0.0 0.059 13.5 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA_33 PF13671.1 gi|119719288|ref|YP_919783.1| - 0.0057 16.5 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|119719288|ref|YP_919783.1| - 0.0086 15.9 0.0 0.042 13.6 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF87 Dynamin_N PF00350.18 gi|119719288|ref|YP_919783.1| - 0.013 15.3 0.3 0.71 9.6 0.0 2.5 2 1 0 2 2 2 0 Dynamin family SRPRB PF09439.5 gi|119719288|ref|YP_919783.1| - 0.013 14.7 0.0 0.23 10.6 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_10 PF12846.2 gi|119719288|ref|YP_919783.1| - 0.014 14.8 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|119719288|ref|YP_919783.1| - 0.016 14.7 0.1 0.039 13.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|119719288|ref|YP_919783.1| - 0.021 14.3 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119719288|ref|YP_919783.1| - 0.021 14.4 0.0 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|119719288|ref|YP_919783.1| - 0.027 14.1 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|119719288|ref|YP_919783.1| - 0.028 14.3 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|119719288|ref|YP_919783.1| - 0.029 13.5 0.0 2.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|119719288|ref|YP_919783.1| - 0.048 13.9 0.0 0.074 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119719288|ref|YP_919783.1| - 0.048 13.9 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|119719288|ref|YP_919783.1| - 0.056 13.3 0.0 0.097 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|119719288|ref|YP_919783.1| - 0.099 12.9 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|119719288|ref|YP_919783.1| - 0.12 11.9 0.0 0.3 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|119719288|ref|YP_919783.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain OMPdecase PF00215.19 gi|119719289|ref|YP_919784.1| - 6.8e-13 48.5 0.3 1.1e-11 44.6 0.2 2.3 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Laminin_II PF06009.7 gi|119719290|ref|YP_919785.1| - 4.1e-08 33.0 28.7 3.7e-05 23.4 5.4 3.7 1 1 3 4 4 4 2 Laminin Domain II Reo_sigmaC PF04582.7 gi|119719290|ref|YP_919785.1| - 1.7e-07 30.7 4.4 0.00014 21.1 0.2 2.4 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|119719290|ref|YP_919785.1| - 3e-07 29.4 43.3 0.00023 19.9 9.0 3.4 1 1 2 3 3 3 2 Spc7 kinetochore protein TMF_TATA_bd PF12325.3 gi|119719290|ref|YP_919785.1| - 7.5e-07 28.9 10.8 7.5e-07 28.9 7.5 4.7 2 2 3 5 5 5 2 TATA element modulatory factor 1 TATA binding APG6 PF04111.7 gi|119719290|ref|YP_919785.1| - 4.2e-06 26.0 38.5 0.00048 19.2 10.5 2.3 1 1 1 2 2 2 2 Autophagy protein Apg6 IncA PF04156.9 gi|119719290|ref|YP_919785.1| - 5.1e-06 26.2 51.2 0.001 18.6 14.6 3.1 1 1 0 2 2 2 2 IncA protein CENP-Q PF13094.1 gi|119719290|ref|YP_919785.1| - 9.2e-06 25.7 8.8 9.2e-06 25.7 6.1 3.2 1 1 2 3 3 2 1 CENP-Q, a CENPA-CAD centromere complex subunit TBPIP PF07106.8 gi|119719290|ref|YP_919785.1| - 1.8e-05 24.3 45.4 0.0039 16.7 4.0 4.7 1 1 4 5 5 5 4 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FH2 PF02181.18 gi|119719290|ref|YP_919785.1| - 2.5e-05 23.3 18.3 0.0012 17.7 2.4 2.3 1 1 1 2 2 2 2 Formin Homology 2 Domain DUF3584 PF12128.3 gi|119719290|ref|YP_919785.1| - 7.6e-05 20.2 33.9 9.3e-05 19.9 23.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) NPV_P10 PF05531.7 gi|119719290|ref|YP_919785.1| - 8.1e-05 22.7 17.9 0.084 13.1 3.2 4.7 1 1 3 4 4 3 2 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|119719290|ref|YP_919785.1| - 8.7e-05 22.4 47.6 0.016 15.0 6.6 4.1 1 1 3 4 4 4 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|119719290|ref|YP_919785.1| - 9.2e-05 22.2 12.8 0.022 14.6 0.5 3.2 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_MLP1_2 PF07926.7 gi|119719290|ref|YP_919785.1| - 9.3e-05 22.1 44.9 0.015 15.0 5.7 4.8 2 2 2 4 4 4 3 TPR/MLP1/MLP2-like protein Myosin_tail_1 PF01576.14 gi|119719290|ref|YP_919785.1| - 0.00036 18.4 42.0 0.00073 17.3 29.1 1.4 1 1 0 1 1 1 1 Myosin tail DUF4201 PF13870.1 gi|119719290|ref|YP_919785.1| - 0.0004 19.8 42.3 0.071 12.5 11.8 4.3 1 1 2 4 4 4 2 Domain of unknown function (DUF4201) MAD PF05557.8 gi|119719290|ref|YP_919785.1| - 0.00046 18.4 43.3 0.00088 17.4 30.0 1.5 1 1 0 1 1 1 1 Mitotic checkpoint protein Mnd1 PF03962.10 gi|119719290|ref|YP_919785.1| - 0.00051 19.7 13.8 0.00051 19.7 9.6 3.8 1 1 3 4 4 4 2 Mnd1 family DUF972 PF06156.8 gi|119719290|ref|YP_919785.1| - 0.00053 20.2 37.2 0.14 12.5 5.3 4.8 1 1 3 4 4 4 2 Protein of unknown function (DUF972) Laminin_I PF06008.9 gi|119719290|ref|YP_919785.1| - 0.00054 19.3 33.4 0.0015 17.9 7.8 3.1 1 1 2 3 3 3 1 Laminin Domain I MCPsignal PF00015.16 gi|119719290|ref|YP_919785.1| - 0.00083 18.9 15.2 0.0066 16.0 2.6 2.1 2 0 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HOOK PF05622.7 gi|119719290|ref|YP_919785.1| - 0.00091 17.1 37.2 0.065 11.0 11.2 3.2 2 2 0 2 2 2 2 HOOK protein DUF2353 PF09789.4 gi|119719290|ref|YP_919785.1| - 0.0011 18.3 17.3 0.0011 18.3 12.0 2.8 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) DUF342 PF03961.8 gi|119719290|ref|YP_919785.1| - 0.0012 17.4 39.1 0.062 11.7 10.1 3.2 1 1 2 3 3 3 3 Protein of unknown function (DUF342) FlxA PF14282.1 gi|119719290|ref|YP_919785.1| - 0.0013 18.5 38.3 0.016 15.1 5.5 4.4 2 2 2 5 5 3 2 FlxA-like protein DUF2968 PF11180.3 gi|119719290|ref|YP_919785.1| - 0.0017 17.8 33.5 0.005 16.2 10.3 3.0 3 1 0 3 3 2 2 Protein of unknown function (DUF2968) EzrA PF06160.7 gi|119719290|ref|YP_919785.1| - 0.0017 16.6 21.8 0.0017 16.6 15.1 3.0 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA DUF4200 PF13863.1 gi|119719290|ref|YP_919785.1| - 0.0019 18.1 9.6 0.0019 18.1 6.7 5.7 2 2 4 6 6 5 1 Domain of unknown function (DUF4200) DUF2730 PF10805.3 gi|119719290|ref|YP_919785.1| - 0.0019 17.9 3.0 0.0019 17.9 2.1 4.6 1 1 4 5 5 5 1 Protein of unknown function (DUF2730) DUF3450 PF11932.3 gi|119719290|ref|YP_919785.1| - 0.002 17.4 33.3 0.043 13.0 7.1 3.1 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) ATG16 PF08614.6 gi|119719290|ref|YP_919785.1| - 0.0021 17.8 41.2 0.025 14.4 10.5 3.2 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) FlaC_arch PF05377.6 gi|119719290|ref|YP_919785.1| - 0.0032 17.3 3.0 0.0032 17.3 2.1 6.3 3 2 4 7 7 7 2 Flagella accessory protein C (FlaC) Nup54 PF13874.1 gi|119719290|ref|YP_919785.1| - 0.0033 17.0 39.6 0.025 14.2 9.9 3.5 1 1 2 3 3 3 2 Nucleoporin complex subunit 54 MscS_porin PF12795.2 gi|119719290|ref|YP_919785.1| - 0.0042 16.4 40.5 0.064 12.5 14.6 2.5 2 1 0 2 2 2 2 Mechanosensitive ion channel porin domain Filament PF00038.16 gi|119719290|ref|YP_919785.1| - 0.0044 16.5 15.8 0.0044 16.5 11.0 2.9 1 1 0 2 2 2 1 Intermediate filament protein V_ATPase_I PF01496.14 gi|119719290|ref|YP_919785.1| - 0.0045 14.9 29.3 0.013 13.4 19.6 1.8 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family DivIC PF04977.10 gi|119719290|ref|YP_919785.1| - 0.0051 16.2 48.5 0.25 10.8 4.5 6.0 1 1 4 5 5 5 2 Septum formation initiator Seryl_tRNA_N PF02403.17 gi|119719290|ref|YP_919785.1| - 0.0059 16.6 42.2 0.013 15.4 5.3 4.6 2 2 2 4 4 4 3 Seryl-tRNA synthetase N-terminal domain TMP_2 PF06791.8 gi|119719290|ref|YP_919785.1| - 0.0072 15.9 4.3 0.064 12.8 0.6 2.2 2 0 0 2 2 2 1 Prophage tail length tape measure protein DUF3166 PF11365.3 gi|119719290|ref|YP_919785.1| - 0.012 16.0 2.5 0.012 16.0 1.7 4.3 3 1 1 4 4 4 0 Protein of unknown function (DUF3166) Allexi_40kDa PF05549.6 gi|119719290|ref|YP_919785.1| - 0.013 14.8 18.2 0.03 13.6 3.2 2.9 1 1 2 3 3 3 0 Allexivirus 40kDa protein DUF869 PF05911.6 gi|119719290|ref|YP_919785.1| - 0.014 13.6 32.6 0.018 13.3 7.5 2.0 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) GAS PF13851.1 gi|119719290|ref|YP_919785.1| - 0.014 14.5 48.4 0.016 14.3 8.1 3.4 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding COG2 PF06148.6 gi|119719290|ref|YP_919785.1| - 0.014 15.2 28.9 0.29 11.0 3.8 4.4 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 V-ATPase_C PF03223.10 gi|119719290|ref|YP_919785.1| - 0.018 13.9 15.7 0.12 11.2 1.7 3.5 1 1 0 2 2 2 0 V-ATPase subunit C KSR1-SAM PF13543.1 gi|119719290|ref|YP_919785.1| - 0.024 14.4 1.4 0.024 14.4 1.0 3.8 3 1 0 3 3 3 0 SAM like domain present in kinase suppressor RAS 1 FUSC PF04632.7 gi|119719290|ref|YP_919785.1| - 0.025 13.0 4.9 0.046 12.1 3.2 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family FCH PF00611.18 gi|119719290|ref|YP_919785.1| - 0.026 14.7 1.7 0.026 14.7 1.2 3.4 2 1 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain HsbA PF12296.3 gi|119719290|ref|YP_919785.1| - 0.029 14.2 1.4 2.4 8.0 0.0 3.1 2 1 0 2 2 2 0 Hydrophobic surface binding protein A Dor1 PF04124.7 gi|119719290|ref|YP_919785.1| - 0.03 12.7 26.4 0.036 12.5 3.1 3.8 1 1 2 4 4 4 0 Dor1-like family DUF948 PF06103.6 gi|119719290|ref|YP_919785.1| - 0.031 14.1 17.4 0.61 9.9 2.9 4.1 2 2 2 4 4 3 0 Bacterial protein of unknown function (DUF948) NTR2 PF15458.1 gi|119719290|ref|YP_919785.1| - 0.035 13.3 39.2 0.027 13.7 4.7 4.2 2 2 2 4 4 4 0 Nineteen complex-related protein 2 RmuC PF02646.11 gi|119719290|ref|YP_919785.1| - 0.043 12.6 24.7 0.56 8.9 1.6 3.6 1 1 1 3 3 3 0 RmuC family Ribonuc_red_lgC PF02867.10 gi|119719290|ref|YP_919785.1| - 0.052 12.1 4.9 0.051 12.1 2.5 1.5 1 1 1 2 2 2 0 Ribonucleotide reductase, barrel domain DUF1664 PF07889.7 gi|119719290|ref|YP_919785.1| - 0.059 13.1 24.1 0.2 11.4 2.7 4.1 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) CALCOCO1 PF07888.6 gi|119719290|ref|YP_919785.1| - 0.066 11.4 41.5 0.28 9.4 8.7 2.8 1 1 2 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like Phage_GPO PF05929.6 gi|119719290|ref|YP_919785.1| - 0.072 12.3 18.1 0.18 11.0 2.6 2.8 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase Syntaxin-6_N PF09177.6 gi|119719290|ref|YP_919785.1| - 0.091 13.1 29.7 2 8.8 4.4 4.7 2 2 2 4 4 4 0 Syntaxin 6, N-terminal AAA_13 PF13166.1 gi|119719290|ref|YP_919785.1| - 0.093 11.1 35.4 0.0045 15.5 16.1 2.2 1 1 1 2 2 2 0 AAA domain IFT57 PF10498.4 gi|119719290|ref|YP_919785.1| - 0.11 11.2 39.4 0.77 8.4 10.7 2.6 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF812 PF05667.6 gi|119719290|ref|YP_919785.1| - 0.11 10.9 38.5 0.057 11.9 10.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF812) WXG100 PF06013.7 gi|119719290|ref|YP_919785.1| - 0.11 12.4 17.3 17 5.4 0.2 5.7 3 2 1 5 5 4 0 Proteins of 100 residues with WXG Rab5-bind PF09311.6 gi|119719290|ref|YP_919785.1| - 0.14 12.0 40.4 0.77 9.6 2.3 3.5 2 1 1 3 3 3 0 Rabaptin-like protein Sec34 PF04136.10 gi|119719290|ref|YP_919785.1| - 0.14 11.8 20.8 0.36 10.5 1.5 3.4 2 1 1 3 3 3 0 Sec34-like family DUF4140 PF13600.1 gi|119719290|ref|YP_919785.1| - 0.17 12.3 42.7 0.39 11.1 2.4 6.2 2 2 3 5 5 3 0 N-terminal domain of unknown function (DUF4140) Phage_GP20 PF06810.6 gi|119719290|ref|YP_919785.1| - 0.19 11.1 33.7 3 7.2 5.3 4.2 1 1 3 5 5 4 0 Phage minor structural protein GP20 ERM PF00769.14 gi|119719290|ref|YP_919785.1| - 0.2 11.1 43.7 0.043 13.3 11.6 2.5 2 1 0 2 2 2 0 Ezrin/radixin/moesin family BLOC1_2 PF10046.4 gi|119719290|ref|YP_919785.1| - 0.26 11.4 32.3 1.3 9.1 0.5 5.7 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dam1 PF08653.5 gi|119719290|ref|YP_919785.1| - 0.29 10.9 5.8 16 5.3 0.0 5.0 4 1 1 5 5 4 0 DASH complex subunit Dam1 Flagellar_rod PF05149.7 gi|119719290|ref|YP_919785.1| - 0.3 10.2 35.3 0.32 10.1 6.4 3.0 1 1 1 3 3 3 0 Paraflagellar rod protein Syntaxin PF00804.20 gi|119719290|ref|YP_919785.1| - 0.34 11.0 35.2 2.1 8.5 2.3 4.2 1 1 3 4 4 4 0 Syntaxin PilJ PF13675.1 gi|119719290|ref|YP_919785.1| - 0.37 11.1 17.5 0.39 11.0 0.7 3.7 1 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term FliJ PF02050.11 gi|119719290|ref|YP_919785.1| - 0.46 10.5 48.8 0.21 11.6 11.9 3.9 2 2 1 3 3 3 0 Flagellar FliJ protein HD_assoc PF13286.1 gi|119719290|ref|YP_919785.1| - 0.47 10.7 5.3 0.27 11.5 1.1 2.7 2 1 1 3 3 1 0 Phosphohydrolase-associated domain DUF4618 PF15397.1 gi|119719290|ref|YP_919785.1| - 0.48 9.7 38.0 0.26 10.5 0.9 5.1 1 1 5 6 6 6 0 Domain of unknown function (DUF4618) Cyclase_polyket PF04673.7 gi|119719290|ref|YP_919785.1| - 0.5 10.4 3.3 32 4.6 0.0 3.1 2 1 1 3 3 3 0 Polyketide synthesis cyclase Cast PF10174.4 gi|119719290|ref|YP_919785.1| - 0.52 8.2 40.0 0.92 7.4 27.6 1.5 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Scaffolding_pro PF11418.3 gi|119719290|ref|YP_919785.1| - 0.54 10.6 14.2 2.1 8.6 1.9 3.6 1 1 2 3 3 3 0 Phi29 scaffolding protein CCDC155 PF14662.1 gi|119719290|ref|YP_919785.1| - 0.59 9.7 45.4 0.37 10.3 9.8 3.1 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 Hemerythrin PF01814.18 gi|119719290|ref|YP_919785.1| - 0.62 10.2 13.7 4.5 7.4 0.8 3.6 2 2 0 2 2 2 0 Hemerythrin HHE cation binding domain LOH1CR12 PF10158.4 gi|119719290|ref|YP_919785.1| - 0.67 9.7 18.6 0.26 11.0 2.4 3.4 2 2 1 3 3 3 0 Tumour suppressor protein COG6 PF06419.6 gi|119719290|ref|YP_919785.1| - 0.67 8.0 24.6 0.42 8.6 3.7 3.4 1 1 3 4 4 4 0 Conserved oligomeric complex COG6 LXG PF04740.7 gi|119719290|ref|YP_919785.1| - 0.68 9.6 25.7 0.42 10.3 3.7 4.1 2 2 1 3 3 2 0 LXG domain of WXG superfamily DUF4226 PF10774.4 gi|119719290|ref|YP_919785.1| - 0.73 9.9 12.5 1.7 8.7 0.2 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF4226) RTBV_P46 PF06216.6 gi|119719290|ref|YP_919785.1| - 0.75 8.5 21.9 2.2 7.0 2.3 3.3 1 1 2 3 3 3 0 Rice tungro bacilliform virus P46 protein DUF4559 PF15112.1 gi|119719290|ref|YP_919785.1| - 1.2 8.2 27.0 0.7 8.9 8.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) DUF1877 PF08974.5 gi|119719290|ref|YP_919785.1| - 1.3 8.6 13.6 0.23 11.1 1.0 3.6 2 2 2 4 4 4 0 Domain of unknown function (DUF1877) CorA PF01544.13 gi|119719290|ref|YP_919785.1| - 1.5 7.8 25.5 0.34 9.9 6.2 2.6 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein ADIP PF11559.3 gi|119719290|ref|YP_919785.1| - 1.5 8.6 46.4 0.081 12.8 10.1 4.6 1 1 4 5 5 5 0 Afadin- and alpha -actinin-Binding CDC37_N PF03234.9 gi|119719290|ref|YP_919785.1| - 1.7 8.9 32.2 0.17 12.1 7.5 2.4 1 1 0 2 2 2 0 Cdc37 N terminal kinase binding Med3 PF11593.3 gi|119719290|ref|YP_919785.1| - 1.9 7.6 15.1 0.32 10.2 3.0 2.2 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal Fez1 PF06818.10 gi|119719290|ref|YP_919785.1| - 2.3 8.2 37.7 0.96 9.4 10.6 2.4 1 1 1 2 2 2 0 Fez1 Rootletin PF15035.1 gi|119719290|ref|YP_919785.1| - 2.4 8.1 44.9 1.9 8.4 13.2 3.1 1 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion APG17 PF04108.7 gi|119719290|ref|YP_919785.1| - 2.6 6.7 28.5 1.6e+02 0.8 19.8 2.2 1 1 0 1 1 1 0 Autophagy protein Apg17 WEMBL PF05701.6 gi|119719290|ref|YP_919785.1| - 2.6 6.3 42.7 54 2.0 29.2 2.3 1 1 0 1 1 1 0 Weak chloroplast movement under blue light TMF_DNA_bd PF12329.3 gi|119719290|ref|YP_919785.1| - 3.3 7.5 48.7 0.03 14.1 5.9 4.7 3 1 2 5 5 4 0 TATA element modulatory factor 1 DNA binding FTA4 PF13093.1 gi|119719290|ref|YP_919785.1| - 3.8 6.8 38.8 0.21 11.0 10.7 3.7 1 1 1 2 2 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF2400 PF09674.5 gi|119719290|ref|YP_919785.1| - 4.8 6.7 14.6 4.5 6.9 1.6 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2400) Fib_alpha PF08702.5 gi|119719290|ref|YP_919785.1| - 4.9 7.2 30.8 0.48 10.5 7.0 3.1 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Ferritin-like PF12902.2 gi|119719290|ref|YP_919785.1| - 5 6.6 10.7 2.4 7.6 0.8 2.4 2 1 0 2 2 2 0 Ferritin-like Spc24 PF08286.6 gi|119719290|ref|YP_919785.1| - 5.5 6.7 34.1 6.6 6.4 0.6 5.5 1 1 2 4 4 4 0 Spc24 subunit of Ndc80 Amidase PF01425.16 gi|119719290|ref|YP_919785.1| - 6 5.5 6.8 5.6 5.6 3.6 1.7 1 1 1 2 2 2 0 Amidase DASH_Dad2 PF08654.5 gi|119719290|ref|YP_919785.1| - 7.3 6.6 24.5 12 5.9 1.9 5.5 1 1 4 5 5 5 0 DASH complex subunit Dad2 PspA_IM30 PF04012.7 gi|119719290|ref|YP_919785.1| - 7.5 5.8 45.3 2.3 7.5 1.0 4.4 1 1 3 4 4 4 0 PspA/IM30 family Atg14 PF10186.4 gi|119719290|ref|YP_919785.1| - 7.7 5.3 48.4 0.26 10.2 12.6 3.2 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Corona_S2 PF01601.11 gi|119719290|ref|YP_919785.1| - 8.7 4.3 10.6 1.8 6.5 2.3 2.3 1 1 0 2 2 2 0 Coronavirus S2 glycoprotein DUF4298 PF14131.1 gi|119719290|ref|YP_919785.1| - 9.1 6.2 20.0 0.5 10.2 1.0 5.0 2 2 3 5 5 5 0 Domain of unknown function (DUF4298) Sas10_Utp3 PF04000.10 gi|119719290|ref|YP_919785.1| - 9.4 6.5 17.3 61 3.9 0.1 5.1 2 2 2 4 4 4 0 Sas10/Utp3/C1D family Cytochrom_B562 PF07361.6 gi|119719290|ref|YP_919785.1| - 9.5 6.6 23.6 1.7 9.1 0.7 3.8 3 2 1 4 4 3 0 Cytochrome b562 TFIIB PF00382.14 gi|119719291|ref|YP_919786.1| - 1.4e-18 66.4 0.1 1.8e-08 34.0 0.0 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|119719291|ref|YP_919786.1| - 5.1e-09 35.2 0.2 9.8e-09 34.3 0.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding UPF0547 PF10571.4 gi|119719291|ref|YP_919786.1| - 1.9e-05 24.2 1.4 4.9e-05 22.9 0.9 1.7 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|119719291|ref|YP_919786.1| - 9.6e-05 21.7 3.6 0.00017 20.9 2.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|119719291|ref|YP_919786.1| - 0.00019 20.5 2.3 0.18 11.0 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Cyclin_C PF02984.14 gi|119719291|ref|YP_919786.1| - 0.0012 18.7 0.0 0.9 9.4 0.0 2.6 3 0 0 3 3 3 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.6 gi|119719291|ref|YP_919786.1| - 0.003 17.1 0.3 0.0061 16.1 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|119719291|ref|YP_919786.1| - 0.0084 15.9 0.2 0.015 15.0 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon HTH_Tnp_ISL3 PF13542.1 gi|119719291|ref|YP_919786.1| - 0.034 13.3 0.2 0.11 11.7 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Rrf2 PF02082.15 gi|119719291|ref|YP_919786.1| - 0.036 14.1 0.4 8.7 6.5 0.0 3.2 2 1 1 3 3 3 0 Transcriptional regulator LacI PF00356.16 gi|119719291|ref|YP_919786.1| - 0.045 13.3 0.3 0.38 10.3 0.0 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family zf-C2H2 PF00096.21 gi|119719291|ref|YP_919786.1| - 0.071 13.4 3.6 0.7 10.3 0.2 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|119719291|ref|YP_919786.1| - 0.081 13.2 1.6 0.4 11.1 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Trp_repressor PF01371.14 gi|119719291|ref|YP_919786.1| - 0.089 12.7 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Trp repressor protein Sgf11 PF08209.6 gi|119719291|ref|YP_919786.1| - 0.16 11.3 3.8 0.15 11.3 0.4 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ISL3 PF14690.1 gi|119719291|ref|YP_919786.1| - 0.18 11.8 0.7 21 5.2 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|119719291|ref|YP_919786.1| - 0.31 11.0 3.4 7.8 6.5 0.1 2.7 3 0 0 3 3 2 0 Zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|119719291|ref|YP_919786.1| - 0.56 10.0 3.8 15 5.4 0.0 2.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG Rubredoxin PF00301.15 gi|119719291|ref|YP_919786.1| - 0.8 9.6 3.8 1.7 8.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin zf-C2HC_2 PF13913.1 gi|119719291|ref|YP_919786.1| - 1.1 8.9 6.9 0.39 10.4 0.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.1 gi|119719291|ref|YP_919786.1| - 2.7 8.4 6.1 1.4 9.3 0.5 2.4 2 0 0 2 2 2 0 Zinc-finger double domain Gar1 PF04410.9 gi|119719292|ref|YP_919787.1| - 6.7e-07 28.8 0.0 7e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|119719292|ref|YP_919787.1| - 0.03 14.1 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 PRC-barrel domain Nop PF01798.13 gi|119719293|ref|YP_919788.1| - 2.3e-53 179.4 0.0 4.5e-53 178.5 0.0 1.5 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|119719293|ref|YP_919788.1| - 3.3e-23 81.2 0.1 7.5e-23 80.0 0.0 1.7 1 0 0 1 1 1 1 NOSIC (NUC001) domain Ribosomal_L38e PF01781.13 gi|119719293|ref|YP_919788.1| - 0.032 13.9 0.1 0.096 12.4 0.0 1.8 1 0 0 1 1 1 0 Ribosomal L38e protein family Pantoate_ligase PF02569.10 gi|119719293|ref|YP_919788.1| - 0.11 11.2 0.6 0.19 10.4 0.4 1.3 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase Fibrillarin PF01269.12 gi|119719294|ref|YP_919789.1| - 2.8e-94 314.3 0.2 3.1e-94 314.1 0.1 1.0 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.5 gi|119719294|ref|YP_919789.1| - 8.2e-05 22.2 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|119719294|ref|YP_919789.1| - 0.0063 16.0 0.0 0.013 15.0 0.0 1.7 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0180 PF03698.8 gi|119719294|ref|YP_919789.1| - 0.059 13.2 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) HTH_3 PF01381.17 gi|119719295|ref|YP_919790.1| - 4.5e-11 42.4 2.3 5.7e-11 42.0 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|119719295|ref|YP_919790.1| - 4.8e-09 36.2 1.4 1.2e-08 34.9 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|119719295|ref|YP_919790.1| - 1.4e-06 28.2 0.2 4.3e-06 26.6 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|119719295|ref|YP_919790.1| - 0.0026 17.2 0.1 0.013 15.0 0.1 2.1 1 0 0 1 1 1 1 MerR family regulatory protein HTH_25 PF13413.1 gi|119719295|ref|YP_919790.1| - 0.0035 16.9 0.1 0.0081 15.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|119719295|ref|YP_919790.1| - 0.038 13.7 0.0 0.13 12.0 0.0 1.9 1 0 0 1 1 1 0 MerR HTH family regulatory protein COPI_C PF06957.6 gi|119719295|ref|YP_919790.1| - 0.098 11.1 0.0 0.16 10.4 0.0 1.4 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus TRM PF02005.11 gi|119719296|ref|YP_919791.1| - 5.4e-92 308.6 0.0 6.7e-92 308.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|119719296|ref|YP_919791.1| - 4.2e-07 29.7 0.0 6.3e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|119719296|ref|YP_919791.1| - 6e-07 29.1 0.0 9.1e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|119719296|ref|YP_919791.1| - 3.8e-06 26.9 0.1 6.9e-06 26.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|119719296|ref|YP_919791.1| - 0.00014 21.3 0.0 0.00022 20.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|119719296|ref|YP_919791.1| - 0.0021 18.6 0.0 0.0039 17.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119719296|ref|YP_919791.1| - 0.0033 16.8 0.0 0.0068 15.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|119719296|ref|YP_919791.1| - 0.0085 16.9 0.0 0.03 15.1 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|119719296|ref|YP_919791.1| - 0.016 14.7 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.12 gi|119719296|ref|YP_919791.1| - 0.038 13.0 0.0 0.059 12.4 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase PrmA PF06325.8 gi|119719296|ref|YP_919791.1| - 0.062 12.4 0.1 0.096 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.12 gi|119719296|ref|YP_919791.1| - 0.072 12.1 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase eIF-5_eIF-2B PF01873.12 gi|119719297|ref|YP_919792.1| - 5.9e-30 103.4 0.0 6.7e-30 103.3 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.1 gi|119719297|ref|YP_919792.1| - 0.0003 21.0 0.8 0.00052 20.2 0.6 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|119719297|ref|YP_919792.1| - 0.00035 20.4 1.4 0.0006 19.6 1.0 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|119719297|ref|YP_919792.1| - 0.0059 15.8 0.6 0.01 15.1 0.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.12 gi|119719297|ref|YP_919792.1| - 0.012 15.1 0.6 0.021 14.3 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Elf1 PF05129.8 gi|119719297|ref|YP_919792.1| - 0.028 14.1 0.4 0.05 13.3 0.3 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like RPA_interact_C PF14768.1 gi|119719297|ref|YP_919792.1| - 0.052 13.9 0.1 0.083 13.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-ribbon_3 PF13248.1 gi|119719297|ref|YP_919792.1| - 0.088 12.0 1.8 2.5 7.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|119719297|ref|YP_919792.1| - 0.11 12.3 0.1 1.6 8.6 0.0 2.6 3 0 0 3 3 3 0 Putative zinc ribbon domain zf-piccolo PF05715.8 gi|119719297|ref|YP_919792.1| - 0.14 12.2 0.4 0.2 11.6 0.3 1.2 1 0 0 1 1 1 0 Piccolo Zn-finger Mu-like_Com PF10122.4 gi|119719297|ref|YP_919792.1| - 0.17 10.9 0.9 13 4.9 0.1 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_4 PF13717.1 gi|119719297|ref|YP_919792.1| - 0.39 10.4 2.2 6 6.6 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|119719297|ref|YP_919792.1| - 0.65 9.6 3.0 5.8 6.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DUF3797 PF12677.2 gi|119719297|ref|YP_919792.1| - 1.4 8.6 6.2 2.1 8.0 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF830 PF05708.7 gi|119719298|ref|YP_919793.1| - 5e-16 59.0 0.0 6.5e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Orthopoxvirus protein of unknown function (DUF830) NLPC_P60 PF00877.14 gi|119719298|ref|YP_919793.1| - 1.3e-06 28.1 0.0 4.3e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 NlpC/P60 family LRAT PF04970.8 gi|119719298|ref|YP_919793.1| - 0.0013 18.6 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 Lecithin retinol acyltransferase DUF1287 PF06940.6 gi|119719298|ref|YP_919793.1| - 0.13 11.6 0.2 3.4 7.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1287) Cupin_3 PF05899.7 gi|119719299|ref|YP_919794.1| - 0.13 11.6 0.0 0.9 8.9 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF861) Pribosyltran PF00156.22 gi|119719300|ref|YP_919795.1| - 1.5e-24 86.1 0.1 2e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|119719300|ref|YP_919795.1| - 1.7e-05 24.1 0.0 2.3e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|119719300|ref|YP_919795.1| - 0.0013 18.0 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase CPSase_L_D3 PF02787.14 gi|119719300|ref|YP_919795.1| - 0.086 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IF-2B PF01008.12 gi|119719301|ref|YP_919796.1| - 9e-82 274.2 0.3 1e-81 274.0 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family IF-2B PF01008.12 gi|119719302|ref|YP_919797.1| - 2.3e-53 181.0 0.2 2.6e-53 180.8 0.1 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Pribosyltran_N PF13793.1 gi|119719303|ref|YP_919798.1| - 8.9e-17 60.8 0.0 4.1e-16 58.7 0.0 1.9 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.1 gi|119719303|ref|YP_919798.1| - 1.3e-09 38.0 0.8 2.6e-08 33.8 0.1 2.5 2 1 1 3 3 3 1 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.22 gi|119719303|ref|YP_919798.1| - 3.7e-09 36.3 1.0 1.1e-08 34.8 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|119719303|ref|YP_919798.1| - 0.018 14.3 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Acyl-CoA_dh_2 PF08028.6 gi|119719303|ref|YP_919798.1| - 0.033 14.4 0.0 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain UPRTase PF14681.1 gi|119719303|ref|YP_919798.1| - 0.056 12.6 0.0 0.13 11.4 0.0 1.6 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Peripla_BP_6 PF13458.1 gi|119719304|ref|YP_919799.1| - 0.1 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein RNase_P_p30 PF01876.11 gi|119719305|ref|YP_919800.1| - 3.5e-16 58.7 0.0 4.5e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 zf-DNA_Pol PF08996.5 gi|119719305|ref|YP_919800.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger RNA_binding PF01877.12 gi|119719306|ref|YP_919801.1| - 1.7e-35 121.6 0.5 2e-35 121.3 0.3 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.12 gi|119719307|ref|YP_919802.1| - 2.2e-63 213.2 3.4 2.7e-63 212.9 2.3 1.1 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1 PF01926.18 gi|119719308|ref|YP_919803.1| - 8.4e-17 61.1 0.0 1.5e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|119719308|ref|YP_919803.1| - 9.5e-17 60.6 0.0 2.1e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|119719308|ref|YP_919803.1| - 2.5e-11 43.1 0.0 6.7e-11 41.6 0.0 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|119719308|ref|YP_919803.1| - 0.0014 19.1 0.0 0.0024 18.3 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|119719308|ref|YP_919803.1| - 0.0021 17.2 0.0 0.0039 16.4 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|119719308|ref|YP_919803.1| - 0.0041 16.5 0.1 0.038 13.3 0.0 2.2 1 1 0 1 1 1 1 Ras family Dynamin_N PF00350.18 gi|119719308|ref|YP_919803.1| - 0.0085 15.9 0.4 1.9 8.2 0.0 2.4 1 1 1 2 2 2 2 Dynamin family DUF258 PF03193.11 gi|119719308|ref|YP_919803.1| - 0.024 13.8 0.0 0.3 10.2 0.0 2.4 1 1 0 1 1 1 0 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|119719308|ref|YP_919803.1| - 0.074 12.4 0.6 16 4.8 0.0 3.2 2 2 1 3 3 3 0 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|119719308|ref|YP_919803.1| - 0.085 13.1 0.0 0.23 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119719308|ref|YP_919803.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Proteasome PF00227.21 gi|119719309|ref|YP_919804.1| - 1.1e-53 181.3 0.2 1.3e-53 181.1 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit DNA_pol_B PF00136.16 gi|119719310|ref|YP_919805.1| - 4.3e-92 309.3 0.0 5.8e-92 308.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|119719310|ref|YP_919805.1| - 4.9e-37 127.5 0.0 1.2e-36 126.2 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|119719310|ref|YP_919805.1| - 2.6e-10 40.2 0.1 4.5e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|119719310|ref|YP_919805.1| - 7.6e-09 35.5 0.0 2.3e-08 34.0 0.0 1.8 1 0 0 1 1 1 1 RNase_H superfamily GFRP PF06399.8 gi|119719310|ref|YP_919805.1| - 0.012 15.1 0.0 0.044 13.3 0.0 2.0 1 0 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) DNA_pol_B_2 PF03175.8 gi|119719310|ref|YP_919805.1| - 0.1 11.2 0.1 0.18 10.4 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral PhoU_div PF01865.11 gi|119719311|ref|YP_919806.1| - 2.3e-08 33.4 2.5 2.3e-05 23.6 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF47 DASH_Duo1 PF08651.5 gi|119719311|ref|YP_919806.1| - 0.0024 17.3 2.0 0.0064 16.0 0.8 2.1 2 0 0 2 2 2 1 DASH complex subunit Duo1 Mago_nashi PF02792.9 gi|119719311|ref|YP_919806.1| - 0.049 13.3 0.9 0.1 12.2 0.3 1.7 2 0 0 2 2 2 0 Mago nashi protein Molydop_binding PF01568.16 gi|119719312|ref|YP_919807.1| - 4.9e-05 23.1 0.0 0.00013 21.7 0.0 1.6 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|119719312|ref|YP_919807.1| - 0.0051 16.7 0.0 0.016 15.1 0.0 1.7 1 1 1 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_10 PF12846.2 gi|119719314|ref|YP_919809.1| - 1.5e-20 73.8 0.0 3.6e-20 72.6 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|119719314|ref|YP_919809.1| - 2.3e-13 50.5 0.0 3.8e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|119719314|ref|YP_919809.1| - 6.6e-07 28.2 0.0 4.2e-06 25.6 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|119719314|ref|YP_919809.1| - 5.6e-05 22.7 0.1 0.00012 21.6 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|119719314|ref|YP_919809.1| - 0.00015 20.2 0.0 0.00023 19.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) T2SE PF00437.15 gi|119719314|ref|YP_919809.1| - 0.00029 19.8 0.1 0.00048 19.1 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein MobB PF03205.9 gi|119719314|ref|YP_919809.1| - 0.00075 19.2 0.0 0.0023 17.6 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.24 gi|119719314|ref|YP_919809.1| - 0.0012 18.4 0.1 0.14 11.6 0.1 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|119719314|ref|YP_919809.1| - 0.0049 16.5 0.1 0.015 15.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|119719314|ref|YP_919809.1| - 0.02 14.0 0.0 0.24 10.4 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|119719314|ref|YP_919809.1| - 0.032 14.3 0.4 0.11 12.6 0.1 1.9 2 1 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|119719314|ref|YP_919809.1| - 0.043 13.4 0.1 0.086 12.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|119719314|ref|YP_919809.1| - 0.05 13.5 2.7 0.32 10.9 0.1 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|119719314|ref|YP_919809.1| - 0.079 13.7 0.4 0.22 12.3 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119719314|ref|YP_919809.1| - 0.097 12.9 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|119719314|ref|YP_919809.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|119719314|ref|YP_919809.1| - 0.11 11.9 0.1 0.87 9.0 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA PF00004.24 gi|119719314|ref|YP_919809.1| - 0.14 12.3 0.1 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) tRNA_anti-codon PF01336.20 gi|119719315|ref|YP_919810.1| - 2.2e-08 33.8 1.1 2.8e-08 33.4 0.3 1.6 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain FG-GAP PF01839.18 gi|119719315|ref|YP_919810.1| - 0.14 11.9 0.9 0.41 10.4 0.2 2.1 2 0 0 2 2 2 0 FG-GAP repeat SelB-wing_2 PF09106.6 gi|119719317|ref|YP_919812.1| - 0.054 13.4 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix CBS PF00571.23 gi|119719318|ref|YP_919813.1| - 3.6e-47 157.8 16.7 9.6e-14 50.9 0.3 4.3 4 0 0 4 4 4 4 CBS domain UbiD PF01977.11 gi|119719321|ref|YP_919816.1| - 1.7e-105 352.8 0.0 2e-105 352.5 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Spt5-NGN PF03439.8 gi|119719322|ref|YP_919817.1| - 1.2e-21 76.2 0.0 1.7e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|119719322|ref|YP_919817.1| - 1.7e-07 30.6 0.9 5.3e-07 29.1 0.6 1.9 1 0 0 1 1 1 1 KOW motif NusG PF02357.14 gi|119719322|ref|YP_919817.1| - 1.1e-06 28.8 0.1 3.5e-06 27.1 0.1 1.8 1 1 0 1 1 1 1 Transcription termination factor nusG SecE PF00584.15 gi|119719323|ref|YP_919818.1| - 0.024 14.2 0.2 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex PhaG_MnhG_YufB PF03334.9 gi|119719323|ref|YP_919818.1| - 0.14 12.2 2.4 0.2 11.7 1.7 1.3 1 1 0 1 1 1 0 Na+/H+ antiporter subunit OTCace PF00185.19 gi|119719324|ref|YP_919819.1| - 2.1e-47 160.9 0.0 3e-47 160.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|119719324|ref|YP_919819.1| - 2.8e-44 150.2 0.0 4e-44 149.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OCD_Mu_crystall PF02423.10 gi|119719324|ref|YP_919819.1| - 0.059 12.1 0.0 0.09 11.5 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family tRNA-synt_2b PF00587.20 gi|119719325|ref|YP_919820.1| - 1.6e-34 119.0 0.0 2.7e-34 118.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|119719325|ref|YP_919820.1| - 4.9e-19 68.3 7.1 1.1e-18 67.2 4.8 1.6 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|119719325|ref|YP_919820.1| - 0.1 11.7 5.0 0.18 10.9 3.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Mnd1 PF03962.10 gi|119719325|ref|YP_919820.1| - 0.11 12.0 2.5 0.18 11.4 1.8 1.2 1 0 0 1 1 1 0 Mnd1 family eIF-5a PF01287.15 gi|119719326|ref|YP_919821.1| - 1.2e-18 66.8 0.2 1.8e-18 66.2 0.2 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|119719326|ref|YP_919821.1| - 1e-06 28.5 0.3 2.4e-06 27.3 0.1 1.8 1 1 1 2 2 2 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|119719326|ref|YP_919821.1| - 0.0074 15.9 1.2 0.0074 15.9 0.8 2.1 2 0 0 2 2 2 1 KOW motif EFP PF01132.15 gi|119719326|ref|YP_919821.1| - 0.05 13.2 0.3 0.094 12.4 0.2 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain CTP_transf_2 PF01467.21 gi|119719327|ref|YP_919822.1| - 1.9e-08 34.5 0.0 2.2e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase Rubella_E2 PF05749.6 gi|119719328|ref|YP_919823.1| - 0.32 10.2 1.5 0.31 10.2 1.1 1.2 1 0 0 1 1 1 0 Rubella membrane glycoprotein E2 PalH PF08733.5 gi|119719328|ref|YP_919823.1| - 0.53 9.0 3.3 0.49 9.1 2.3 1.0 1 0 0 1 1 1 0 PalH/RIM21 DUF1418 PF07214.7 gi|119719328|ref|YP_919823.1| - 1.2 8.7 6.4 1.4 8.5 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1418) DUF2628 PF10947.3 gi|119719328|ref|YP_919823.1| - 7.7 6.3 8.2 8.9 6.1 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) Glycos_transf_4 PF00953.16 gi|119719329|ref|YP_919824.1| - 1.5e-29 102.8 18.8 3.6e-29 101.5 13.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 4 DS PF01916.12 gi|119719330|ref|YP_919825.1| - 1.3e-62 211.6 0.0 1.6e-62 211.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Spt4 PF06093.8 gi|119719331|ref|YP_919826.1| - 3.8e-14 52.3 0.2 4.5e-14 52.0 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.1 gi|119719331|ref|YP_919826.1| - 0.00049 19.4 0.2 0.00076 18.8 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|119719331|ref|YP_919826.1| - 0.0016 17.5 0.6 0.0026 16.9 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|119719331|ref|YP_919826.1| - 0.0047 16.7 0.1 0.005 16.6 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF2072 PF09845.4 gi|119719331|ref|YP_919826.1| - 0.0053 16.6 0.5 0.0084 16.0 0.3 1.5 1 1 1 2 2 2 1 Zn-ribbon containing protein (DUF2072) TF_Zn_Ribbon PF08271.7 gi|119719331|ref|YP_919826.1| - 0.038 13.2 2.8 0.04 13.2 0.2 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-C4H2 PF10146.4 gi|119719331|ref|YP_919826.1| - 0.076 13.0 0.5 0.1 12.5 0.3 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Rad50_zn_hook PF04423.9 gi|119719331|ref|YP_919826.1| - 0.076 12.4 0.3 0.15 11.5 0.2 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif CAP_C PF08603.6 gi|119719331|ref|YP_919826.1| - 0.097 12.0 0.0 0.11 11.8 0.0 1.0 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) C terminal RRN7 PF11781.3 gi|119719331|ref|YP_919826.1| - 0.11 12.0 0.6 0.11 12.0 0.4 1.7 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prok-RING_1 PF14446.1 gi|119719331|ref|YP_919826.1| - 0.15 11.8 1.9 0.2 11.4 1.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Lar_restr_allev PF14354.1 gi|119719331|ref|YP_919826.1| - 0.24 11.6 0.1 0.24 11.6 0.1 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar YhfH PF14149.1 gi|119719331|ref|YP_919826.1| - 0.37 10.6 2.6 0.41 10.4 0.1 2.0 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.5 gi|119719331|ref|YP_919826.1| - 0.62 10.0 3.4 8.5 6.4 2.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF2256 PF10013.4 gi|119719331|ref|YP_919826.1| - 1.7 8.4 7.1 1.6 8.5 0.5 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) SHS2_Rpb7-N PF03876.12 gi|119719332|ref|YP_919827.1| - 2.5e-17 62.7 0.0 4.7e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|119719332|ref|YP_919827.1| - 2.1e-11 43.7 3.0 2.1e-11 43.7 2.1 1.7 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|119719332|ref|YP_919827.1| - 0.0049 17.0 0.0 0.013 15.6 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase III subunit Rpc25 DNA_methylase PF00145.12 gi|119719333|ref|YP_919828.1| - 1.9e-51 175.1 0.0 9.2e-34 117.0 0.0 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|119719333|ref|YP_919828.1| - 1.4e-05 25.0 0.0 2e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|119719333|ref|YP_919828.1| - 0.0076 15.8 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|119719333|ref|YP_919828.1| - 0.086 12.4 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein GH114_assoc PF14741.1 gi|119719335|ref|YP_919830.1| - 0.059 13.0 0.2 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 N-terminal glycosyl-hydrolase-114-associated domain DUF4135 PF13575.1 gi|119719335|ref|YP_919830.1| - 0.15 10.9 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4135) DUF2122 PF09895.4 gi|119719336|ref|YP_919831.1| - 8.3e-39 132.0 0.1 4.4e-37 126.5 0.1 2.0 2 0 0 2 2 2 2 RecB-family nuclease (DUF2122) SpoU_methylase PF00588.14 gi|119719336|ref|YP_919831.1| - 0.0031 17.3 0.0 0.0042 16.9 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Ribosomal_L37e PF01907.14 gi|119719337|ref|YP_919832.1| - 9.6e-26 89.3 11.6 1.1e-25 89.1 8.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|119719337|ref|YP_919832.1| - 0.011 15.4 0.6 0.015 15.1 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon Stc1 PF12898.2 gi|119719337|ref|YP_919832.1| - 0.061 13.3 0.5 0.067 13.2 0.3 1.2 1 0 0 1 1 1 0 Stc1 domain NOB1_Zn_bind PF08772.6 gi|119719337|ref|YP_919832.1| - 0.067 13.0 1.3 0.086 12.6 0.9 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-FPG_IleRS PF06827.9 gi|119719337|ref|YP_919832.1| - 0.11 12.1 5.1 0.2 11.3 3.5 1.5 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DNA_RNApol_7kD PF03604.8 gi|119719337|ref|YP_919832.1| - 0.11 11.9 1.6 0.11 11.9 1.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|119719337|ref|YP_919832.1| - 0.28 10.8 3.1 0.38 10.4 2.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|119719337|ref|YP_919832.1| - 0.32 10.9 6.0 0.56 10.1 4.2 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) GFA PF04828.9 gi|119719337|ref|YP_919832.1| - 0.85 9.6 4.5 0.57 10.1 0.2 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_4 PF13717.1 gi|119719337|ref|YP_919832.1| - 1 9.0 3.6 1.2 8.8 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|119719337|ref|YP_919832.1| - 1.2 8.4 6.3 4.5 6.6 4.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|119719337|ref|YP_919832.1| - 5.1 6.8 11.0 5.8 6.7 0.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|119719337|ref|YP_919832.1| - 6.4 6.6 9.6 8 6.3 0.9 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|119719337|ref|YP_919832.1| - 8 6.1 6.5 2.5 7.7 1.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119719337|ref|YP_919832.1| - 8.1 6.0 8.9 53 3.4 6.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain LSM PF01423.17 gi|119719338|ref|YP_919833.1| - 6.9e-22 76.7 0.4 7.7e-22 76.6 0.3 1.0 1 0 0 1 1 1 1 LSM domain Ribosomal_S6e PF01092.14 gi|119719339|ref|YP_919834.1| - 1.5e-31 108.6 0.6 1.8e-31 108.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e eIF-1a PF01176.14 gi|119719341|ref|YP_919836.1| - 4.4e-24 83.6 0.1 5.7e-24 83.3 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Renin_r PF07850.9 gi|119719341|ref|YP_919836.1| - 0.11 12.9 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Renin receptor-like protein Peptidase_S24 PF00717.18 gi|119719341|ref|YP_919836.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase S24-like Thioredoxin PF00085.15 gi|119719342|ref|YP_919837.1| - 1.4e-20 72.9 0.1 1.7e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|119719342|ref|YP_919837.1| - 3.4e-09 36.5 0.2 4.7e-09 36.1 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|119719342|ref|YP_919837.1| - 6.5e-08 32.7 1.1 4.2e-07 30.1 0.8 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|119719342|ref|YP_919837.1| - 7.2e-07 29.2 0.7 5.2e-05 23.2 0.3 2.1 1 1 1 2 2 2 2 Thioredoxin-like AhpC-TSA PF00578.16 gi|119719342|ref|YP_919837.1| - 8.2e-05 22.2 0.3 0.00022 20.9 0.2 1.6 1 1 0 1 1 1 1 AhpC/TSA family DIM1 PF02966.11 gi|119719342|ref|YP_919837.1| - 0.00011 21.7 0.1 0.00013 21.5 0.1 1.0 1 0 0 1 1 1 1 Mitosis protein DIM1 Redoxin PF08534.5 gi|119719342|ref|YP_919837.1| - 0.01 15.3 0.5 0.026 14.0 0.4 1.6 1 1 0 1 1 1 0 Redoxin HyaE PF07449.6 gi|119719342|ref|YP_919837.1| - 0.03 14.2 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE XPG_I PF00867.13 gi|119719343|ref|YP_919838.1| - 1.3e-21 76.3 0.0 2.5e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|119719343|ref|YP_919838.1| - 7.8e-16 58.1 0.0 1.4e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|119719343|ref|YP_919838.1| - 1.7e-06 28.2 0.9 8e-06 26.0 0.0 2.5 3 0 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold DNA_ligase_A_M PF01068.16 gi|119719344|ref|YP_919839.1| - 1.1e-45 155.5 0.0 1.8e-45 154.8 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|119719344|ref|YP_919839.1| - 2.7e-29 102.2 0.0 8.8e-27 94.0 0.0 2.5 1 1 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|119719344|ref|YP_919839.1| - 5.6e-18 65.1 0.1 1.3e-17 63.9 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|119719344|ref|YP_919839.1| - 0.14 11.7 0.0 3.1 7.4 0.0 2.2 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain Lactamase_B_2 PF12706.2 gi|119719345|ref|YP_919840.1| - 5.4e-08 32.6 0.0 6.7e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|119719345|ref|YP_919840.1| - 3.4e-07 30.1 0.0 7.1e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|119719345|ref|YP_919840.1| - 0.012 15.2 0.0 0.034 13.7 0.0 1.7 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily SRP54 PF00448.17 gi|119719346|ref|YP_919841.1| - 1.2e-69 233.7 0.2 1.8e-69 233.1 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|119719346|ref|YP_919841.1| - 5.3e-06 26.1 0.7 9.3e-06 25.3 0.2 1.6 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|119719346|ref|YP_919841.1| - 1.3e-05 24.7 0.2 8.4e-05 22.0 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|119719346|ref|YP_919841.1| - 4.5e-05 23.1 0.1 0.00024 20.8 0.0 2.0 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|119719346|ref|YP_919841.1| - 0.00032 20.2 0.1 0.0013 18.1 0.0 2.0 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|119719346|ref|YP_919841.1| - 0.00038 19.3 0.1 0.00077 18.3 0.0 1.6 1 1 0 1 1 1 1 ArgK protein AAA_22 PF13401.1 gi|119719346|ref|YP_919841.1| - 0.00055 20.0 0.0 0.0013 18.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|119719346|ref|YP_919841.1| - 0.00087 18.8 0.0 0.0023 17.4 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain SRP54_N PF02881.14 gi|119719346|ref|YP_919841.1| - 0.0012 18.8 1.3 0.0033 17.5 0.9 1.7 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA PF00004.24 gi|119719346|ref|YP_919841.1| - 0.002 18.3 0.0 0.0059 16.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) GTP_EFTU PF00009.22 gi|119719346|ref|YP_919841.1| - 0.0036 16.7 0.0 0.0054 16.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain NTPase_1 PF03266.10 gi|119719346|ref|YP_919841.1| - 0.008 15.9 0.1 0.21 11.2 0.0 2.2 1 1 1 2 2 2 1 NTPase AAA_16 PF13191.1 gi|119719346|ref|YP_919841.1| - 0.0087 16.0 0.3 0.048 13.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.1 gi|119719346|ref|YP_919841.1| - 0.011 15.7 0.1 0.021 14.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain B12-binding PF02310.14 gi|119719346|ref|YP_919841.1| - 0.017 14.9 0.1 0.04 13.7 0.1 1.6 1 1 0 1 1 1 0 B12 binding domain AAA_19 PF13245.1 gi|119719346|ref|YP_919841.1| - 0.02 14.6 0.1 0.052 13.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|119719346|ref|YP_919841.1| - 0.028 13.8 0.2 0.068 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|119719346|ref|YP_919841.1| - 0.042 14.0 0.0 0.15 12.2 0.0 1.9 1 1 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|119719346|ref|YP_919841.1| - 0.079 12.5 0.1 0.26 10.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|119719346|ref|YP_919841.1| - 0.083 11.9 0.0 0.71 8.8 0.0 2.0 1 1 0 2 2 2 0 Anion-transporting ATPase ABC_tran PF00005.22 gi|119719346|ref|YP_919841.1| - 0.1 12.9 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Thymidylate_kin PF02223.12 gi|119719346|ref|YP_919841.1| - 0.1 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase DUF2201 PF09967.4 gi|119719346|ref|YP_919841.1| - 0.11 12.5 0.1 19 5.3 0.0 2.3 2 0 0 2 2 2 0 VWA-like domain (DUF2201) TrwB_AAD_bind PF10412.4 gi|119719346|ref|YP_919841.1| - 0.11 11.0 0.0 0.19 10.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.9 gi|119719346|ref|YP_919841.1| - 0.12 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|119719346|ref|YP_919841.1| - 0.12 12.2 0.0 0.3 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) ATP_bind_1 PF03029.12 gi|119719346|ref|YP_919841.1| - 0.13 11.8 0.1 0.42 10.1 0.0 1.8 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.5 gi|119719346|ref|YP_919841.1| - 0.14 11.2 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Prefoldin PF02996.12 gi|119719347|ref|YP_919842.1| - 5.6e-26 90.5 3.8 6.5e-26 90.3 2.6 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|119719347|ref|YP_919842.1| - 0.00031 20.4 8.5 0.0088 15.7 0.7 2.1 2 0 0 2 2 2 2 Prefoldin subunit Borrelia_lipo_1 PF05714.6 gi|119719347|ref|YP_919842.1| - 0.0082 15.2 0.9 0.011 14.8 0.6 1.3 1 1 0 1 1 1 1 Borrelia burgdorferi virulent strain associated lipoprotein Syntaxin PF00804.20 gi|119719347|ref|YP_919842.1| - 0.014 15.5 0.2 0.027 14.6 0.1 1.5 1 1 0 1 1 1 0 Syntaxin Peripla_BP_2 PF01497.13 gi|119719347|ref|YP_919842.1| - 0.023 13.8 0.7 0.05 12.7 0.1 1.7 1 1 1 2 2 2 0 Periplasmic binding protein BLOC1_2 PF10046.4 gi|119719347|ref|YP_919842.1| - 0.04 14.0 3.2 2.3 8.4 0.2 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 KNOX2 PF03791.8 gi|119719347|ref|YP_919842.1| - 0.061 12.6 2.7 2.6 7.3 0.1 2.5 2 1 0 2 2 2 0 KNOX2 domain Acyl-CoA_dh_1 PF00441.19 gi|119719347|ref|YP_919842.1| - 0.098 12.7 0.2 0.18 11.8 0.0 1.5 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain Med28 PF11594.3 gi|119719347|ref|YP_919842.1| - 0.26 11.5 3.1 0.29 11.3 0.2 2.0 1 1 1 2 2 2 0 Mediator complex subunit 28 Ribosomal_L18ae PF01775.12 gi|119719348|ref|YP_919843.1| - 4.4e-08 33.0 0.1 6e-08 32.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain DUF46 PF01864.12 gi|119719350|ref|YP_919845.1| - 1.2e-43 149.0 3.8 7.9e-43 146.3 2.6 2.0 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|119719350|ref|YP_919845.1| - 4.1e-07 29.9 0.2 4.1e-07 29.9 0.1 2.5 3 0 0 3 3 3 1 Cytidylyltransferase family 5TM-5TMR_LYT PF07694.7 gi|119719350|ref|YP_919845.1| - 0.039 13.2 6.3 0.012 14.9 2.2 1.7 2 0 0 2 2 2 0 5TMR of 5TMR-LYT STN1_2 PF09170.5 gi|119719351|ref|YP_919846.1| - 0.056 13.2 0.2 0.076 12.7 0.1 1.2 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 SieB PF14163.1 gi|119719351|ref|YP_919846.1| - 0.22 11.0 2.0 0.13 11.8 0.2 1.5 2 0 0 2 2 2 0 Superinfection exclusion protein B Antitoxin-MazE PF04014.13 gi|119719352|ref|YP_919847.1| - 1.9e-07 30.6 0.1 0.00021 20.9 0.0 2.2 2 0 0 2 2 2 2 Antidote-toxin recognition MazE CDC48_N PF02359.13 gi|119719352|ref|YP_919847.1| - 0.012 15.5 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Cons_hypoth95 PF03602.10 gi|119719353|ref|YP_919848.1| - 0.046 13.1 0.0 0.049 13.0 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF711 PF05167.7 gi|119719354|ref|YP_919849.1| - 2.7e-78 263.4 0.0 3.5e-78 263.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Nuc_deoxyrib_tr PF05014.10 gi|119719355|ref|YP_919850.1| - 8.9e-07 28.7 0.0 1.2e-05 25.1 0.0 2.5 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase AAA_17 PF13207.1 gi|119719355|ref|YP_919850.1| - 0.002 18.9 0.9 0.017 15.9 0.7 2.5 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|119719356|ref|YP_919851.1| - 5.6e-47 159.9 0.0 9.1e-47 159.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|119719356|ref|YP_919851.1| - 0.0052 17.6 0.9 0.05 14.4 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|119719356|ref|YP_919851.1| - 0.0078 15.7 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|119719356|ref|YP_919851.1| - 0.008 16.1 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|119719356|ref|YP_919851.1| - 0.0092 16.2 0.0 0.025 14.8 0.0 1.7 1 0 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|119719356|ref|YP_919851.1| - 0.019 14.7 0.0 0.054 13.2 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|119719356|ref|YP_919851.1| - 0.04 13.8 0.4 0.19 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|119719356|ref|YP_919851.1| - 0.057 13.3 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|119719356|ref|YP_919851.1| - 0.081 12.8 0.3 2.4 8.0 0.0 2.8 2 1 0 2 2 2 0 AAA domain Miro PF08477.8 gi|119719356|ref|YP_919851.1| - 0.11 13.0 0.0 0.36 11.3 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein AAA_23 PF13476.1 gi|119719356|ref|YP_919851.1| - 0.52 10.6 2.6 0.56 10.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain AdoMet_dc PF02675.10 gi|119719358|ref|YP_919853.1| - 7.9e-36 122.1 0.0 9.2e-36 121.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DSHCT PF08148.7 gi|119719360|ref|YP_919855.1| - 0.0036 16.5 0.2 0.0042 16.3 0.1 1.1 1 0 0 1 1 1 1 DSHCT (NUC185) domain DUF4404 PF14357.1 gi|119719360|ref|YP_919855.1| - 0.12 12.8 1.1 0.14 12.5 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) AAA_18 PF13238.1 gi|119719361|ref|YP_919856.1| - 8.9e-22 77.7 0.0 1.2e-21 77.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|119719361|ref|YP_919856.1| - 8.8e-10 39.4 0.0 1.1e-09 39.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|119719361|ref|YP_919856.1| - 1.3e-05 25.3 0.0 2.4e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|119719361|ref|YP_919856.1| - 1.9e-05 24.5 0.4 0.0002 21.2 0.2 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_16 PF13191.1 gi|119719361|ref|YP_919856.1| - 7.4e-05 22.8 0.0 8.8e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|119719361|ref|YP_919856.1| - 8e-05 22.3 0.1 0.00022 20.9 0.0 1.7 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|119719361|ref|YP_919856.1| - 0.00021 21.1 0.2 0.0075 16.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|119719361|ref|YP_919856.1| - 0.00042 20.3 0.0 0.00075 19.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|119719361|ref|YP_919856.1| - 0.00052 19.6 1.3 0.0085 15.6 0.6 2.1 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|119719361|ref|YP_919856.1| - 0.00055 19.2 0.0 0.00083 18.6 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|119719361|ref|YP_919856.1| - 0.00097 18.8 0.5 0.0025 17.5 0.2 1.8 1 1 0 1 1 1 1 NTPase AAA_22 PF13401.1 gi|119719361|ref|YP_919856.1| - 0.0013 18.8 0.1 0.0028 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|119719361|ref|YP_919856.1| - 0.0027 17.6 0.0 0.0038 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|119719361|ref|YP_919856.1| - 0.0032 17.1 0.3 0.0068 16.0 0.1 1.6 2 0 0 2 2 2 1 NACHT domain AAA_3 PF07726.6 gi|119719361|ref|YP_919856.1| - 0.0034 16.9 0.0 0.0067 16.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|119719361|ref|YP_919856.1| - 0.0054 16.8 0.0 0.0081 16.3 0.0 1.4 1 0 0 1 1 1 1 RNA helicase MobB PF03205.9 gi|119719361|ref|YP_919856.1| - 0.012 15.3 0.7 0.029 14.0 0.1 1.9 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|119719361|ref|YP_919856.1| - 0.012 15.1 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|119719361|ref|YP_919856.1| - 0.015 14.3 0.0 0.02 13.9 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus APS_kinase PF01583.15 gi|119719361|ref|YP_919856.1| - 0.017 14.7 0.1 0.031 13.9 0.0 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|119719361|ref|YP_919856.1| - 0.02 14.6 0.2 0.056 13.2 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain DUF2075 PF09848.4 gi|119719361|ref|YP_919856.1| - 0.028 13.4 0.0 0.031 13.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.8 gi|119719361|ref|YP_919856.1| - 0.028 13.1 0.0 0.028 13.1 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus Cytidylate_kin2 PF13189.1 gi|119719361|ref|YP_919856.1| - 0.034 14.0 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase-like family AAA_25 PF13481.1 gi|119719361|ref|YP_919856.1| - 0.035 13.5 0.1 0.064 12.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|119719361|ref|YP_919856.1| - 0.036 13.1 0.5 0.064 12.3 0.2 1.5 2 0 0 2 2 2 0 Zeta toxin PRK PF00485.13 gi|119719361|ref|YP_919856.1| - 0.045 13.3 0.1 0.16 11.4 0.1 1.8 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ArsA_ATPase PF02374.10 gi|119719361|ref|YP_919856.1| - 0.045 12.7 0.0 0.057 12.4 0.0 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Viral_helicase1 PF01443.13 gi|119719361|ref|YP_919856.1| - 0.049 13.1 0.1 0.077 12.4 0.0 1.4 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.12 gi|119719361|ref|YP_919856.1| - 0.055 12.8 0.1 0.09 12.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein MMR_HSR1 PF01926.18 gi|119719361|ref|YP_919856.1| - 0.068 13.1 0.3 0.099 12.6 0.2 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|119719361|ref|YP_919856.1| - 0.073 12.2 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ArgK PF03308.11 gi|119719361|ref|YP_919856.1| - 0.077 11.7 0.1 0.15 10.8 0.1 1.4 1 0 0 1 1 1 0 ArgK protein Sigma54_activat PF00158.21 gi|119719361|ref|YP_919856.1| - 0.081 12.3 0.1 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain CbiA PF01656.18 gi|119719361|ref|YP_919856.1| - 0.081 12.3 1.7 0.22 10.9 1.2 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activ_2 PF14532.1 gi|119719361|ref|YP_919856.1| - 0.085 12.9 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain CoaE PF01121.15 gi|119719361|ref|YP_919856.1| - 0.087 12.2 0.3 0.15 11.4 0.1 1.5 1 1 0 1 1 1 0 Dephospho-CoA kinase Hpr_kinase_C PF07475.7 gi|119719361|ref|YP_919856.1| - 0.11 11.7 0.0 0.25 10.6 0.0 1.7 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain UPF0079 PF02367.12 gi|119719361|ref|YP_919856.1| - 0.14 11.8 0.1 0.71 9.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|119719361|ref|YP_919856.1| - 0.29 10.5 1.3 0.42 10.0 0.3 1.7 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain T2SF PF00482.18 gi|119719362|ref|YP_919857.1| - 3.2e-21 75.5 9.8 1.3e-12 47.7 0.0 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Beta-Casp PF10996.3 gi|119719363|ref|YP_919858.1| - 1.6e-22 79.7 0.0 2.7e-22 79.0 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|119719363|ref|YP_919858.1| - 1.4e-18 67.2 0.2 2.5e-18 66.4 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|119719363|ref|YP_919858.1| - 2.4e-13 49.6 0.1 4.5e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|119719363|ref|YP_919858.1| - 9.8e-13 48.0 0.0 1.9e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|119719363|ref|YP_919858.1| - 2.1e-06 27.5 0.0 7.4e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HSP20 PF00011.16 gi|119719364|ref|YP_919859.1| - 4.3e-14 52.2 2.4 2e-12 46.8 1.7 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|119719364|ref|YP_919859.1| - 1.2e-05 25.7 0.6 2.1e-05 24.9 0.4 1.4 1 0 0 1 1 1 1 CS domain DPCD PF14913.1 gi|119719364|ref|YP_919859.1| - 0.024 13.7 0.5 0.063 12.3 0.1 1.7 2 0 0 2 2 2 0 DPCD protein family Ribosomal_S24e PF01282.14 gi|119719365|ref|YP_919860.1| - 1.6e-26 91.9 0.0 2e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|119719366|ref|YP_919861.1| - 8.3e-09 35.1 3.3 1.1e-08 34.7 2.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|119719366|ref|YP_919861.1| - 9.2e-05 22.1 3.5 0.00012 21.8 2.4 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|119719366|ref|YP_919861.1| - 9.6e-05 21.9 0.8 0.0001 21.9 0.6 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|119719366|ref|YP_919861.1| - 0.0058 15.7 2.0 0.24 10.6 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-piccolo PF05715.8 gi|119719366|ref|YP_919861.1| - 0.0098 15.8 0.2 0.011 15.6 0.1 1.1 1 0 0 1 1 1 1 Piccolo Zn-finger GFA PF04828.9 gi|119719366|ref|YP_919861.1| - 0.012 15.5 1.6 0.78 9.7 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|119719366|ref|YP_919861.1| - 0.013 15.1 0.2 0.028 14.0 0.1 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|119719366|ref|YP_919861.1| - 0.017 15.0 0.8 0.024 14.5 0.6 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) YhfH PF14149.1 gi|119719366|ref|YP_919861.1| - 0.028 14.2 2.7 0.1 12.3 0.1 2.3 2 0 0 2 2 2 0 YhfH-like protein DZR PF12773.2 gi|119719366|ref|YP_919861.1| - 0.03 14.1 1.7 0.052 13.3 1.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|119719366|ref|YP_919861.1| - 0.035 13.7 4.5 0.14 11.8 3.1 1.8 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|119719366|ref|YP_919861.1| - 0.078 12.4 4.0 1.1 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|119719366|ref|YP_919861.1| - 0.08 12.7 3.2 0.37 10.5 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-tcix PF14952.1 gi|119719366|ref|YP_919861.1| - 0.082 12.2 0.3 0.082 12.2 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn_Tnp_IS91 PF14319.1 gi|119719366|ref|YP_919861.1| - 0.096 12.2 0.9 0.13 11.8 0.6 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-RanBP PF00641.13 gi|119719366|ref|YP_919861.1| - 0.12 11.5 3.7 0.75 8.9 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-NADH-PPase PF09297.6 gi|119719366|ref|YP_919861.1| - 0.12 11.9 4.0 2.1 7.9 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|119719366|ref|YP_919861.1| - 0.13 11.6 4.4 2.6 7.4 0.2 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|119719366|ref|YP_919861.1| - 0.15 11.2 3.1 0.32 10.2 2.2 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|119719366|ref|YP_919861.1| - 0.18 11.5 0.1 0.18 11.5 0.1 2.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4379 PF14311.1 gi|119719366|ref|YP_919861.1| - 0.34 10.7 3.7 2.5 7.9 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Ribosomal_L37e PF01907.14 gi|119719366|ref|YP_919861.1| - 0.35 10.6 4.4 0.53 10.1 3.1 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e TFIIS_C PF01096.13 gi|119719366|ref|YP_919861.1| - 0.38 10.4 3.0 3.9 7.1 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) FeS PF04060.8 gi|119719366|ref|YP_919861.1| - 0.59 9.7 0.3 0.59 9.7 0.2 2.0 2 0 0 2 2 2 0 Putative Fe-S cluster zf-ISL3 PF14690.1 gi|119719366|ref|YP_919861.1| - 0.63 10.1 9.1 0.57 10.2 0.5 2.7 1 1 3 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|119719366|ref|YP_919861.1| - 1.4 8.9 0.1 1.4 8.9 0.0 2.6 3 0 0 3 3 3 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|119719366|ref|YP_919861.1| - 2.2 8.2 6.7 3.5 7.5 0.2 2.4 3 0 0 3 3 2 0 Rubredoxin Zn_ribbon_recom PF13408.1 gi|119719366|ref|YP_919861.1| - 2.3 8.5 6.6 6.4 7.1 4.3 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF2082 PF09855.4 gi|119719366|ref|YP_919861.1| - 2.9 7.7 7.7 2 8.2 0.6 2.5 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF669 PF05037.8 gi|119719367|ref|YP_919862.1| - 0.0096 15.8 0.1 0.26 11.2 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF669) Peptidase_M22 PF00814.20 gi|119719369|ref|YP_919864.1| - 2.8e-79 266.3 0.0 3.3e-79 266.1 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family BcrAD_BadFG PF01869.15 gi|119719369|ref|YP_919864.1| - 0.0072 15.6 0.0 0.023 13.9 0.0 1.9 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Pkinase PF00069.20 gi|119719370|ref|YP_919865.1| - 2.8e-11 43.0 0.0 3.8e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|119719370|ref|YP_919865.1| - 8.1e-09 35.0 0.0 1.3e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|119719370|ref|YP_919865.1| - 3.7e-08 33.4 0.2 0.0045 16.7 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|119719370|ref|YP_919865.1| - 3.8e-06 26.1 0.0 3.3e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|119719370|ref|YP_919865.1| - 0.00016 20.8 0.0 0.0002 20.5 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase NMD3 PF04981.8 gi|119719371|ref|YP_919866.1| - 1.5e-49 168.2 0.0 1.9e-49 167.9 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|119719371|ref|YP_919866.1| - 0.019 14.7 2.8 0.089 12.6 1.1 2.3 2 1 0 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|119719371|ref|YP_919866.1| - 0.21 11.1 4.4 1 8.9 0.5 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|119719371|ref|YP_919866.1| - 0.45 10.5 4.0 18 5.3 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain zf-C4pol PF14260.1 gi|119719371|ref|YP_919866.1| - 0.45 10.5 2.7 4 7.5 0.4 2.9 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-FPG_IleRS PF06827.9 gi|119719371|ref|YP_919866.1| - 1.8 8.2 9.0 0.14 11.8 1.6 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.3 gi|119719371|ref|YP_919866.1| - 3.2 7.7 5.4 0.94 9.4 0.1 2.6 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|119719371|ref|YP_919866.1| - 7.1 6.4 7.2 26 4.5 0.0 2.8 2 1 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|119719371|ref|YP_919866.1| - 7.9 5.8 7.3 54 3.1 0.0 2.9 2 1 0 2 2 2 0 zinc-ribbon domain DUF424 PF04242.8 gi|119719372|ref|YP_919867.1| - 2.8e-09 36.9 0.0 4.8e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF424) KaiC PF06745.8 gi|119719373|ref|YP_919868.1| - 3.3e-56 189.9 0.0 3.9e-56 189.7 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|119719373|ref|YP_919868.1| - 1.9e-05 23.2 0.0 2.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|119719373|ref|YP_919868.1| - 0.00028 20.3 0.8 0.0014 18.1 0.5 2.0 1 1 0 1 1 1 1 AAA domain MEDS PF14417.1 gi|119719373|ref|YP_919868.1| - 0.0012 17.8 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain FtsK_SpoIIIE PF01580.13 gi|119719373|ref|YP_919868.1| - 0.0022 17.5 0.0 0.0045 16.4 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|119719373|ref|YP_919868.1| - 0.0088 15.5 0.0 0.036 13.5 0.0 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain QCR10 PF09796.4 gi|119719373|ref|YP_919868.1| - 0.011 15.3 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) DUF2075 PF09848.4 gi|119719373|ref|YP_919868.1| - 0.015 14.2 0.0 0.022 13.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|119719373|ref|YP_919868.1| - 0.038 12.8 0.2 0.066 12.1 0.0 1.4 2 0 0 2 2 2 0 Type II/IV secretion system protein DEAD PF00270.24 gi|119719373|ref|YP_919868.1| - 0.041 13.3 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|119719373|ref|YP_919868.1| - 0.044 13.2 0.1 0.36 10.2 0.0 2.2 1 1 2 3 3 3 0 AAA-like domain ResIII PF04851.10 gi|119719373|ref|YP_919868.1| - 0.045 13.5 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|119719373|ref|YP_919868.1| - 0.071 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.1 gi|119719373|ref|YP_919868.1| - 0.077 13.1 0.1 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain Radical_SAM PF04055.16 gi|119719374|ref|YP_919869.1| - 2.2e-15 57.2 0.0 3.9e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|119719374|ref|YP_919869.1| - 0.0054 16.5 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain HD PF01966.17 gi|119719375|ref|YP_919870.1| - 8.7e-14 51.5 0.6 2.2e-13 50.3 0.4 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|119719375|ref|YP_919870.1| - 0.00025 20.3 0.0 0.00053 19.3 0.0 1.4 1 0 0 1 1 1 1 HDOD domain Methyltrn_RNA_2 PF04013.7 gi|119719377|ref|YP_919872.1| - 3.1e-09 36.6 0.0 5.4e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase TruB_N PF01509.13 gi|119719378|ref|YP_919873.1| - 1.2e-25 90.3 0.0 5.4e-22 78.5 0.0 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|119719378|ref|YP_919873.1| - 5.3e-20 70.9 0.4 9.5e-20 70.1 0.3 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|119719378|ref|YP_919873.1| - 5.5e-18 64.6 0.1 1.5e-17 63.2 0.1 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain KOW PF00467.24 gi|119719379|ref|YP_919874.1| - 6.2e-05 22.5 0.6 0.00012 21.6 0.5 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.12 gi|119719379|ref|YP_919874.1| - 0.00019 21.6 0.0 0.00026 21.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 HSP20 PF00011.16 gi|119719379|ref|YP_919874.1| - 0.038 13.8 0.0 0.05 13.4 0.0 1.1 1 0 0 1 1 1 0 Hsp20/alpha crystallin family UPF0147 PF03685.8 gi|119719380|ref|YP_919875.1| - 1.6e-31 108.0 0.6 1.7e-31 107.9 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Inhibitor_I48 PF10467.4 gi|119719380|ref|YP_919875.1| - 0.045 13.6 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase inhibitor clitocypin UPF0253 PF06786.7 gi|119719380|ref|YP_919875.1| - 0.08 13.0 0.2 0.81 9.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Radical_SAM PF04055.16 gi|119719381|ref|YP_919876.1| - 1.8e-06 28.2 0.3 1.4e-05 25.3 0.1 2.3 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|119719381|ref|YP_919876.1| - 3.2e-05 24.0 0.0 5.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|119719381|ref|YP_919876.1| - 4.1e-05 23.5 0.0 8e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_5 PF01022.15 gi|119719383|ref|YP_919878.1| - 9.1e-14 50.8 0.1 1.4e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|119719383|ref|YP_919878.1| - 5.6e-11 42.0 0.1 1e-10 41.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|119719383|ref|YP_919878.1| - 2.2e-06 27.2 0.3 3.8e-06 26.5 0.1 1.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|119719383|ref|YP_919878.1| - 0.00059 19.3 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|119719383|ref|YP_919878.1| - 0.0017 18.0 0.9 0.0027 17.3 0.1 1.7 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|119719383|ref|YP_919878.1| - 0.0025 17.8 0.0 0.0045 17.0 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator Penicillinase_R PF03965.11 gi|119719383|ref|YP_919878.1| - 0.0029 17.6 0.0 0.004 17.2 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_29 PF13551.1 gi|119719383|ref|YP_919878.1| - 0.0038 17.3 0.2 0.063 13.4 0.0 2.0 1 1 1 2 2 2 1 Winged helix-turn helix HTH_24 PF13412.1 gi|119719383|ref|YP_919878.1| - 0.004 16.5 0.6 0.021 14.1 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|119719383|ref|YP_919878.1| - 0.027 13.9 0.1 0.032 13.7 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit KorB PF08535.5 gi|119719383|ref|YP_919878.1| - 0.041 14.0 0.0 0.061 13.4 0.0 1.4 1 0 0 1 1 1 0 KorB domain DUF742 PF05331.6 gi|119719383|ref|YP_919878.1| - 0.11 12.1 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) GCD14 PF08704.5 gi|119719384|ref|YP_919879.1| - 8e-34 117.2 0.0 2.3e-33 115.7 0.0 1.6 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|119719384|ref|YP_919879.1| - 1.6e-11 44.1 0.0 2.2e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|119719384|ref|YP_919879.1| - 4.2e-09 36.1 0.0 5.6e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719384|ref|YP_919879.1| - 4.1e-08 33.7 0.0 6.7e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|119719384|ref|YP_919879.1| - 1.2e-06 28.5 0.0 3.3e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|119719384|ref|YP_919879.1| - 2.6e-06 26.6 0.0 3.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|119719384|ref|YP_919879.1| - 0.00013 22.4 0.0 0.00024 21.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119719384|ref|YP_919879.1| - 0.00013 21.3 0.0 0.00035 19.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|119719384|ref|YP_919879.1| - 0.00051 19.6 0.0 0.00067 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.13 gi|119719384|ref|YP_919879.1| - 0.0035 16.4 0.0 0.0047 16.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|119719384|ref|YP_919879.1| - 0.0053 16.4 0.0 0.025 14.3 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|119719384|ref|YP_919879.1| - 0.0071 16.0 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|119719384|ref|YP_919879.1| - 0.0097 14.9 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|119719384|ref|YP_919879.1| - 0.013 16.2 0.0 0.03 15.1 0.0 1.6 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119719384|ref|YP_919879.1| - 0.016 15.6 0.0 0.041 14.3 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|119719384|ref|YP_919879.1| - 0.031 13.8 0.0 0.089 12.3 0.0 1.7 1 1 1 2 2 2 0 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|119719384|ref|YP_919879.1| - 0.039 14.3 0.0 0.056 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Gcd10p PF04189.8 gi|119719384|ref|YP_919879.1| - 0.16 11.0 0.0 0.42 9.6 0.0 1.6 2 0 0 2 2 2 0 Gcd10p family Ribosomal_S19e PF01090.14 gi|119719387|ref|YP_919882.1| - 1.7e-52 176.5 0.0 2e-52 176.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|119719387|ref|YP_919882.1| - 6.9e-06 25.5 0.0 0.0036 16.8 0.0 2.8 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB C-terminus HTH_12 PF08461.5 gi|119719387|ref|YP_919882.1| - 0.00012 21.7 0.1 0.00022 20.8 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|119719387|ref|YP_919882.1| - 0.012 15.3 0.1 1.5 8.6 0.0 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|119719387|ref|YP_919882.1| - 0.012 15.3 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix GntR PF00392.16 gi|119719387|ref|YP_919882.1| - 0.048 13.1 0.1 0.12 11.8 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Mrr_N PF14338.1 gi|119719387|ref|YP_919882.1| - 0.11 12.5 0.1 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain dsDNA_bind PF01984.15 gi|119719388|ref|YP_919883.1| - 8.7e-27 93.2 13.3 1.1e-26 92.9 9.2 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SDA1 PF05285.7 gi|119719388|ref|YP_919883.1| - 0.037 13.2 3.9 0.039 13.2 2.7 1.1 1 0 0 1 1 1 0 SDA1 SurA_N PF09312.6 gi|119719388|ref|YP_919883.1| - 0.2 11.5 5.0 0.16 11.8 0.4 2.0 1 1 1 2 2 2 0 SurA N-terminal domain Ribosomal_L39 PF00832.15 gi|119719389|ref|YP_919884.1| - 3.8e-16 58.2 7.5 4.3e-16 58.1 5.2 1.0 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|119719390|ref|YP_919885.1| - 8.4e-27 92.6 1.2 9.6e-27 92.4 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|119719391|ref|YP_919886.1| - 9.5e-67 223.9 1.2 1.2e-66 223.6 0.8 1.2 1 0 0 1 1 1 1 eIF-6 family PGM_PMM_III PF02880.11 gi|119719391|ref|YP_919886.1| - 0.12 12.3 0.1 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Radical_SAM PF04055.16 gi|119719392|ref|YP_919887.1| - 1.5e-16 61.0 0.0 2.8e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily AIRS PF00586.19 gi|119719393|ref|YP_919888.1| - 7.2e-20 71.0 0.0 1.2e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|119719393|ref|YP_919888.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DctQ PF04290.7 gi|119719394|ref|YP_919889.1| - 0.0023 17.7 0.5 0.0024 17.6 0.3 1.1 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component DUF4231 PF14015.1 gi|119719394|ref|YP_919889.1| - 0.0091 15.9 0.3 0.011 15.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4231) DUF2975 PF11188.3 gi|119719394|ref|YP_919889.1| - 0.018 14.7 0.5 0.021 14.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) Colicin_V PF02674.11 gi|119719394|ref|YP_919889.1| - 0.022 14.6 0.7 0.026 14.3 0.5 1.1 1 0 0 1 1 1 0 Colicin V production protein Sensor PF13796.1 gi|119719394|ref|YP_919889.1| - 0.13 11.8 2.3 0.15 11.6 1.6 1.1 1 0 0 1 1 1 0 Putative sensor Helicase_C_2 PF13307.1 gi|119719395|ref|YP_919890.1| - 2.3e-22 79.7 0.0 7e-22 78.1 0.0 1.7 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|119719395|ref|YP_919890.1| - 1.1e-19 70.4 0.0 1.6e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|119719395|ref|YP_919890.1| - 0.00069 19.1 0.2 0.14 11.6 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|119719395|ref|YP_919890.1| - 0.008 16.0 0.1 0.35 10.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SIS PF01380.17 gi|119719396|ref|YP_919891.1| - 1.7e-16 59.9 0.3 2.9e-16 59.2 0.2 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|119719396|ref|YP_919891.1| - 6.7e-12 45.2 5.0 7.1e-07 29.0 1.2 2.2 1 1 1 2 2 2 2 SIS domain DUF531 PF04407.7 gi|119719396|ref|YP_919891.1| - 0.039 13.8 0.0 0.074 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF531) PGM_PMM_I PF02878.11 gi|119719396|ref|YP_919891.1| - 0.055 12.9 0.1 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PRMT5 PF05185.11 gi|119719396|ref|YP_919891.1| - 0.075 11.9 0.7 0.12 11.2 0.1 1.5 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase AAA_19 PF13245.1 gi|119719396|ref|YP_919891.1| - 0.34 10.6 5.6 0.83 9.4 1.2 2.6 1 1 1 2 2 2 0 Part of AAA domain DSHCT PF08148.7 gi|119719397|ref|YP_919892.1| - 0.041 13.1 0.1 0.047 12.9 0.1 1.1 1 0 0 1 1 1 0 DSHCT (NUC185) domain DUF4404 PF14357.1 gi|119719397|ref|YP_919892.1| - 0.098 13.0 0.6 0.11 12.8 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) IMS PF00817.15 gi|119719398|ref|YP_919893.1| - 0.085 12.6 0.0 0.36 10.6 0.0 2.2 1 1 0 1 1 1 0 impB/mucB/samB family NERD PF08378.6 gi|119719399|ref|YP_919894.1| - 0.0015 18.8 0.0 0.0022 18.2 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.7 gi|119719399|ref|YP_919894.1| - 0.0049 16.6 0.0 0.0097 15.7 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Hjc PF01870.13 gi|119719399|ref|YP_919894.1| - 0.043 13.4 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DUF234 PF03008.9 gi|119719399|ref|YP_919894.1| - 0.059 13.5 0.0 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 Archaea bacterial proteins of unknown function Ribosomal_L14 PF00238.14 gi|119719400|ref|YP_919895.1| - 3.3e-36 123.7 0.0 3.7e-36 123.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|119719400|ref|YP_919895.1| - 0.097 12.7 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.15 gi|119719401|ref|YP_919896.1| - 9.1e-13 48.0 5.1 1.2e-12 47.6 3.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|119719402|ref|YP_919897.1| - 6.2e-29 99.4 0.1 6.8e-29 99.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|119719403|ref|YP_919898.1| - 8.3e-19 67.0 9.3 1e-18 66.7 6.4 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF4355 PF14265.1 gi|119719403|ref|YP_919898.1| - 0.0041 17.0 5.8 0.0051 16.7 4.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4355) DUF29 PF01724.11 gi|119719403|ref|YP_919898.1| - 0.0044 16.8 2.0 0.0055 16.5 1.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF29 DUF1192 PF06698.6 gi|119719403|ref|YP_919898.1| - 0.0048 16.6 3.8 0.0048 16.6 2.7 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1192) Enkurin PF13864.1 gi|119719403|ref|YP_919898.1| - 0.074 13.2 6.3 0.098 12.8 4.3 1.3 1 1 0 1 1 1 0 Calmodulin-binding TMCO5 PF14992.1 gi|119719403|ref|YP_919898.1| - 0.11 11.6 1.8 0.11 11.6 1.3 1.1 1 0 0 1 1 1 0 TMCO5 family DUF3653 PF12375.3 gi|119719403|ref|YP_919898.1| - 0.13 12.5 3.3 0.22 11.7 1.9 1.7 1 1 1 2 2 2 0 Phage protein DUF4208 PF13907.1 gi|119719403|ref|YP_919898.1| - 0.23 11.6 1.1 0.25 11.5 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) Carboxyl_trans PF01039.17 gi|119719403|ref|YP_919898.1| - 0.51 8.6 3.8 0.57 8.4 2.6 1.0 1 0 0 1 1 1 0 Carboxyl transferase domain Vps5 PF09325.5 gi|119719403|ref|YP_919898.1| - 0.52 9.5 5.5 0.57 9.3 3.8 1.1 1 0 0 1 1 1 0 Vps5 C terminal like Mnd1 PF03962.10 gi|119719403|ref|YP_919898.1| - 0.71 9.5 3.9 0.77 9.3 2.7 1.1 1 0 0 1 1 1 0 Mnd1 family DASH_Spc34 PF08657.5 gi|119719403|ref|YP_919898.1| - 1.6 8.3 6.0 1.7 8.2 4.1 1.0 1 0 0 1 1 1 0 DASH complex subunit Spc34 Herpes_UL25 PF01499.11 gi|119719403|ref|YP_919898.1| - 2.8 6.1 6.1 2.8 6.1 4.2 1.0 1 0 0 1 1 1 0 Herpesvirus UL25 family Ribosomal_S3_C PF00189.15 gi|119719404|ref|YP_919899.1| - 9.8e-17 60.9 0.2 3.7e-16 59.1 0.0 2.0 1 1 1 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|119719404|ref|YP_919899.1| - 2.1e-10 40.0 0.1 3.7e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|119719404|ref|YP_919899.1| - 3.6e-06 26.4 0.3 0.016 14.8 0.2 2.7 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|119719404|ref|YP_919899.1| - 0.00031 20.3 1.2 0.0087 15.6 0.1 2.7 3 0 0 3 3 3 1 KH domain KH_5 PF13184.1 gi|119719404|ref|YP_919899.1| - 0.014 15.1 0.2 0.028 14.2 0.2 1.5 1 0 0 1 1 1 0 NusA-like KH domain KH_4 PF13083.1 gi|119719404|ref|YP_919899.1| - 0.03 13.9 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.14 gi|119719405|ref|YP_919900.1| - 9e-28 96.3 0.1 1e-27 96.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DUF4288 PF14119.1 gi|119719405|ref|YP_919900.1| - 0.14 12.2 0.0 2.2 8.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4288) Ribosomal_L37ae PF01780.14 gi|119719406|ref|YP_919901.1| - 5.1e-33 112.8 4.4 5.7e-33 112.6 3.0 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|119719406|ref|YP_919901.1| - 0.0012 18.4 0.6 0.0018 17.8 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|119719406|ref|YP_919901.1| - 0.0025 17.4 0.2 0.0033 17.0 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like IBR PF01485.16 gi|119719406|ref|YP_919901.1| - 0.0026 17.5 0.6 0.0035 17.1 0.4 1.1 1 0 0 1 1 1 1 IBR domain zf-TFIIB PF13453.1 gi|119719406|ref|YP_919901.1| - 0.0071 15.5 4.1 0.027 13.6 2.9 2.0 1 1 0 1 1 1 1 Transcription factor zinc-finger Rubredoxin PF00301.15 gi|119719406|ref|YP_919901.1| - 0.015 15.1 0.3 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|119719406|ref|YP_919901.1| - 0.016 15.0 3.7 0.023 14.5 2.6 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|119719406|ref|YP_919901.1| - 0.03 14.6 0.6 8.9 6.9 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|119719406|ref|YP_919901.1| - 0.049 13.2 3.0 0.51 9.9 1.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719406|ref|YP_919901.1| - 0.052 13.2 3.3 0.9 9.2 2.1 2.4 1 1 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|119719406|ref|YP_919901.1| - 0.054 12.9 0.9 0.21 11.1 0.7 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 PhnA_Zn_Ribbon PF08274.7 gi|119719406|ref|YP_919901.1| - 0.058 13.1 0.6 0.17 11.7 0.4 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Mu-like_Com PF10122.4 gi|119719406|ref|YP_919901.1| - 0.083 11.9 0.2 0.083 11.9 0.2 1.7 2 0 0 2 2 2 0 Mu-like prophage protein Com HypA PF01155.14 gi|119719406|ref|YP_919901.1| - 0.09 12.4 0.3 0.12 12.0 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|119719406|ref|YP_919901.1| - 0.12 12.1 1.1 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|119719406|ref|YP_919901.1| - 0.12 11.7 0.3 0.18 11.1 0.2 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1 PF03811.8 gi|119719406|ref|YP_919901.1| - 0.12 11.8 0.3 0.12 11.8 0.2 2.0 2 0 0 2 2 2 0 InsA N-terminal domain Nudix_N_2 PF14803.1 gi|119719406|ref|YP_919901.1| - 0.13 12.0 2.3 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal DUF4379 PF14311.1 gi|119719406|ref|YP_919901.1| - 0.13 12.1 2.9 2.5 7.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-ribbon_3 PF13248.1 gi|119719406|ref|YP_919901.1| - 0.15 11.2 3.4 6.7 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|119719406|ref|YP_919901.1| - 0.29 10.2 3.7 2.2 7.4 0.2 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others UPF0547 PF10571.4 gi|119719406|ref|YP_919901.1| - 0.29 10.8 6.7 1.9 8.2 4.7 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|119719406|ref|YP_919901.1| - 0.34 10.9 2.8 5.5 7.0 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|119719406|ref|YP_919901.1| - 2.8 7.5 4.8 11 5.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|119719406|ref|YP_919901.1| - 6.5 6.4 6.6 4.8e+02 0.4 4.6 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) RrnaAD PF00398.15 gi|119719407|ref|YP_919902.1| - 8.3e-36 123.3 0.0 1.1e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|119719407|ref|YP_919902.1| - 8.1e-07 29.0 0.1 1.3e-06 28.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|119719407|ref|YP_919902.1| - 2.6e-05 23.6 0.0 4.1e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|119719407|ref|YP_919902.1| - 0.00056 19.5 0.0 0.00083 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719407|ref|YP_919902.1| - 0.0067 16.9 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|119719407|ref|YP_919902.1| - 0.018 15.5 0.0 0.034 14.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Ribosomal_L7Ae PF01248.21 gi|119719408|ref|YP_919903.1| - 1.7e-29 101.1 0.4 2.2e-29 100.7 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|119719408|ref|YP_919903.1| - 0.00055 19.6 0.2 0.0012 18.6 0.1 1.6 1 1 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|119719408|ref|YP_919903.1| - 0.0012 18.6 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 Nol1_Nop2_Fmu PF01189.12 gi|119719409|ref|YP_919904.1| - 8.1e-41 140.2 0.0 4.1e-38 131.3 0.0 2.1 2 0 0 2 2 2 2 NOL1/NOP2/sun family PUA PF01472.15 gi|119719409|ref|YP_919904.1| - 7.4e-12 44.8 1.4 1.6e-11 43.7 1.0 1.6 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.1 gi|119719409|ref|YP_919904.1| - 9.1e-11 41.5 0.0 1.5e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|119719409|ref|YP_919904.1| - 4.8e-10 39.4 0.0 8.3e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119719409|ref|YP_919904.1| - 2.2e-07 30.4 0.0 3.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|119719409|ref|YP_919904.1| - 2.2e-06 28.2 0.0 9.3e-06 26.2 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|119719409|ref|YP_919904.1| - 3.1e-06 27.2 0.0 6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.7 gi|119719409|ref|YP_919904.1| - 0.00011 22.6 0.1 0.0023 18.3 0.1 2.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|119719409|ref|YP_919904.1| - 0.00017 21.2 0.0 0.00047 19.7 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|119719409|ref|YP_919904.1| - 0.00022 21.5 0.0 0.0004 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|119719409|ref|YP_919904.1| - 0.0014 17.7 0.0 0.017 14.2 0.0 2.1 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.12 gi|119719409|ref|YP_919904.1| - 0.0083 15.1 0.0 0.49 9.4 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|119719409|ref|YP_919904.1| - 0.01 15.2 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 ADH_zinc_N PF00107.21 gi|119719409|ref|YP_919904.1| - 0.017 14.6 0.1 1.5 8.3 0.0 3.0 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Fibrillarin PF01269.12 gi|119719409|ref|YP_919904.1| - 0.051 12.4 0.0 0.16 10.8 0.0 1.7 2 0 0 2 2 2 0 Fibrillarin DUF43 PF01861.11 gi|119719409|ref|YP_919904.1| - 0.064 12.2 0.0 0.099 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF43 DUF4434 PF14488.1 gi|119719409|ref|YP_919904.1| - 0.16 11.6 0.0 0.39 10.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4434) Ribosomal_S28e PF01200.13 gi|119719410|ref|YP_919905.1| - 3.7e-32 109.8 4.2 4.3e-32 109.6 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|119719410|ref|YP_919905.1| - 0.53 10.1 0.1 0.53 10.1 0.1 2.9 3 1 0 3 3 3 0 KOW motif Sld5 PF05916.6 gi|119719411|ref|YP_919906.1| - 1.7e-07 31.4 2.2 2.5e-07 30.9 1.5 1.2 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.18 gi|119719412|ref|YP_919907.1| - 1.5e-143 477.5 0.0 2.1e-143 477.1 0.0 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|119719412|ref|YP_919907.1| - 1.3e-19 70.8 3.4 2.9e-19 69.7 0.1 2.7 3 0 0 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|119719412|ref|YP_919907.1| - 2.9e-08 33.1 0.1 5.7e-05 22.3 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|119719412|ref|YP_919907.1| - 9.4e-07 28.6 0.0 2.8e-06 27.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|119719412|ref|YP_919907.1| - 3.7e-05 23.3 0.0 0.00011 21.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.5 gi|119719412|ref|YP_919907.1| - 0.0021 17.9 0.9 0.0041 17.0 0.6 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Bot1p PF12298.3 gi|119719412|ref|YP_919907.1| - 0.025 14.5 0.3 0.053 13.4 0.2 1.6 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein Sigma54_activat PF00158.21 gi|119719412|ref|YP_919907.1| - 0.027 13.9 0.1 0.18 11.2 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain HypA PF01155.14 gi|119719412|ref|YP_919907.1| - 0.035 13.7 0.0 0.084 12.5 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|119719412|ref|YP_919907.1| - 0.12 12.2 0.7 0.19 11.5 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon DEAD PF00270.24 gi|119719413|ref|YP_919908.1| - 4.4e-28 97.8 0.0 3.8e-27 94.8 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|119719413|ref|YP_919908.1| - 3.2e-12 46.4 0.1 1.7e-11 44.1 0.0 2.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|119719413|ref|YP_919908.1| - 3.5e-10 39.6 0.0 8.7e-10 38.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_2 PF12826.2 gi|119719413|ref|YP_919908.1| - 5.5e-08 32.5 0.0 2.8e-06 27.1 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|119719413|ref|YP_919908.1| - 1.1e-07 31.1 0.0 0.01 15.4 0.0 3.7 3 0 0 3 3 3 2 Helix-hairpin-helix motif ResIII PF04851.10 gi|119719413|ref|YP_919908.1| - 4.6e-07 29.8 0.0 2.2e-06 27.6 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Sec63 PF02889.11 gi|119719413|ref|YP_919908.1| - 3.6e-06 26.4 0.0 6.8e-06 25.5 0.0 1.4 2 0 0 2 2 2 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|119719413|ref|YP_919908.1| - 0.00021 20.7 0.0 0.0017 17.8 0.0 2.5 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda AAA_19 PF13245.1 gi|119719413|ref|YP_919908.1| - 0.00046 19.8 0.5 0.13 11.9 0.1 2.9 2 0 0 2 2 2 1 Part of AAA domain IMS_HHH PF11798.3 gi|119719413|ref|YP_919908.1| - 0.0012 18.7 0.1 2.9 8.0 0.0 2.9 2 0 0 2 2 2 2 IMS family HHH motif HemN_C PF06969.11 gi|119719413|ref|YP_919908.1| - 0.016 15.2 0.1 0.045 13.8 0.1 1.8 1 0 0 1 1 1 0 HemN C-terminal domain HHH_3 PF12836.2 gi|119719413|ref|YP_919908.1| - 0.039 13.8 0.0 0.29 11.0 0.0 2.2 1 1 1 2 2 2 0 Helix-hairpin-helix motif GTP_EFTU PF00009.22 gi|119719414|ref|YP_919909.1| - 9.4e-30 103.4 0.0 5.2e-29 101.0 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|119719414|ref|YP_919909.1| - 1.4e-20 73.1 0.2 3e-20 72.1 0.1 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|119719414|ref|YP_919909.1| - 5.1e-19 67.6 2.0 1.8e-18 65.9 1.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|119719414|ref|YP_919909.1| - 5.2e-09 36.1 0.1 5.2e-09 36.1 0.0 3.1 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|119719414|ref|YP_919909.1| - 1.2e-06 28.4 0.0 3.2e-06 27.0 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|119719414|ref|YP_919909.1| - 9.4e-05 22.8 0.0 0.00029 21.3 0.0 1.9 2 0 0 2 2 2 1 Miro-like protein ATP_bind_1 PF03029.12 gi|119719414|ref|YP_919909.1| - 0.00038 20.0 0.0 0.0043 16.6 0.0 2.2 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|119719414|ref|YP_919909.1| - 0.00044 19.7 0.1 0.28 10.6 0.0 3.3 4 0 0 4 4 4 1 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|119719414|ref|YP_919909.1| - 0.0011 18.7 0.1 0.0051 16.6 0.0 2.0 2 0 0 2 2 2 1 Dynamin family Arf PF00025.16 gi|119719414|ref|YP_919909.1| - 0.028 13.6 0.1 0.83 8.8 0.0 2.7 2 1 0 2 2 2 0 ADP-ribosylation factor family Ras PF00071.17 gi|119719414|ref|YP_919909.1| - 0.034 13.5 0.0 0.19 11.0 0.0 2.1 1 1 0 1 1 1 0 Ras family MobB PF03205.9 gi|119719414|ref|YP_919909.1| - 0.038 13.6 0.1 0.1 12.2 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|119719414|ref|YP_919909.1| - 0.19 10.9 0.0 2.2 7.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Ribosomal_L24e PF01246.15 gi|119719415|ref|YP_919910.1| - 2.9e-17 62.2 0.6 3.2e-17 62.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|119719415|ref|YP_919910.1| - 3.1e-06 26.7 0.5 4e-06 26.3 0.4 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.13 gi|119719415|ref|YP_919910.1| - 0.00093 19.0 0.8 0.0025 17.6 0.6 1.7 1 1 0 1 1 1 1 MYND finger zf-HIT PF04438.11 gi|119719415|ref|YP_919910.1| - 0.022 14.4 3.4 0.15 11.7 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF2175 PF09943.4 gi|119719415|ref|YP_919910.1| - 0.071 13.1 0.1 0.081 12.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF2116 PF09889.4 gi|119719415|ref|YP_919910.1| - 0.073 12.8 2.2 1.9 8.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ecl1 PF12855.2 gi|119719415|ref|YP_919910.1| - 0.074 12.3 1.2 0.13 11.5 0.8 1.4 1 1 0 1 1 1 0 Life-span regulatory factor Meleagrin PF08189.6 gi|119719415|ref|YP_919910.1| - 0.13 11.7 0.7 0.13 11.7 0.5 2.1 2 0 0 2 2 2 0 Meleagrin/Cygnin family zf-ribbon_3 PF13248.1 gi|119719415|ref|YP_919910.1| - 0.33 10.2 2.0 0.66 9.2 0.4 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Toprim_4 PF13662.1 gi|119719416|ref|YP_919911.1| - 1e-08 35.0 0.3 3.3e-08 33.4 0.1 2.0 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|119719416|ref|YP_919911.1| - 5.5e-07 29.4 0.0 2.9e-06 27.1 0.0 2.3 1 0 0 1 1 1 1 Toprim domain Bactofilin PF04519.8 gi|119719416|ref|YP_919911.1| - 0.013 15.5 0.6 0.033 14.1 0.4 1.7 1 0 0 1 1 1 0 Polymer-forming cytoskeletal Toprim_2 PF13155.1 gi|119719416|ref|YP_919911.1| - 0.015 15.6 0.0 0.034 14.4 0.0 1.8 1 1 0 1 1 1 0 Toprim-like SRP54 PF00448.17 gi|119719417|ref|YP_919912.1| - 1.3e-69 233.5 0.1 2e-69 233.0 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|119719417|ref|YP_919912.1| - 2.4e-25 88.7 5.0 3.7e-25 88.1 2.5 2.1 2 1 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|119719417|ref|YP_919912.1| - 4e-12 46.0 2.0 1.7e-11 44.0 1.4 2.2 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|119719417|ref|YP_919912.1| - 5.9e-08 32.3 0.3 5.1e-07 29.3 0.1 2.3 2 1 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|119719417|ref|YP_919912.1| - 1.5e-07 31.2 0.2 4.2e-07 29.7 0.2 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|119719417|ref|YP_919912.1| - 1.1e-05 25.5 0.0 5.9e-05 23.2 0.0 2.2 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|119719417|ref|YP_919912.1| - 6.8e-05 22.8 0.0 0.00016 21.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|119719417|ref|YP_919912.1| - 8.1e-05 21.5 0.9 0.00079 18.2 0.0 2.5 3 0 0 3 3 3 1 ArgK protein AAA_16 PF13191.1 gi|119719417|ref|YP_919912.1| - 0.00015 21.7 0.0 0.0006 19.8 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|119719417|ref|YP_919912.1| - 0.00022 20.8 0.1 0.008 15.9 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain CbiA PF01656.18 gi|119719417|ref|YP_919912.1| - 0.00071 19.0 0.7 0.0052 16.2 0.5 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.1 gi|119719417|ref|YP_919912.1| - 0.00074 19.1 7.9 0.0013 18.4 2.7 3.0 2 1 1 3 3 2 1 AAA domain Thymidylate_kin PF02223.12 gi|119719417|ref|YP_919912.1| - 0.00075 18.9 0.6 0.0076 15.6 0.0 2.8 3 0 0 3 3 3 1 Thymidylate kinase AAA_33 PF13671.1 gi|119719417|ref|YP_919912.1| - 0.0012 18.7 0.0 0.0028 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|119719417|ref|YP_919912.1| - 0.0013 18.9 0.3 0.027 14.6 0.1 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) GTP_EFTU PF00009.22 gi|119719417|ref|YP_919912.1| - 0.0018 17.7 0.0 0.0052 16.2 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_10 PF12846.2 gi|119719417|ref|YP_919912.1| - 0.0018 17.7 0.1 0.0048 16.3 0.1 1.8 1 1 0 1 1 1 1 AAA-like domain LpxK PF02606.9 gi|119719417|ref|YP_919912.1| - 0.0021 17.0 0.1 0.0039 16.2 0.1 1.4 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase Glyco_transf_4 PF13439.1 gi|119719417|ref|YP_919912.1| - 0.0024 17.5 0.1 0.092 12.4 0.0 2.4 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Zeta_toxin PF06414.7 gi|119719417|ref|YP_919912.1| - 0.0027 16.8 0.1 0.0061 15.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|119719417|ref|YP_919912.1| - 0.0035 18.1 1.1 0.021 15.6 0.1 2.7 2 1 0 2 2 2 1 AAA domain Miro PF08477.8 gi|119719417|ref|YP_919912.1| - 0.0055 17.1 0.4 0.071 13.6 0.3 2.5 1 1 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|119719417|ref|YP_919912.1| - 0.007 15.9 0.4 0.015 14.8 0.1 1.7 2 0 0 2 2 1 1 Conserved hypothetical ATP binding protein APS_kinase PF01583.15 gi|119719417|ref|YP_919912.1| - 0.0071 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase NTPase_1 PF03266.10 gi|119719417|ref|YP_919912.1| - 0.013 15.1 0.1 0.032 13.9 0.1 1.6 1 0 0 1 1 1 0 NTPase Arf PF00025.16 gi|119719417|ref|YP_919912.1| - 0.019 14.2 0.1 0.19 10.9 0.0 2.4 3 0 0 3 3 2 0 ADP-ribosylation factor family SRPRB PF09439.5 gi|119719417|ref|YP_919912.1| - 0.02 14.1 0.1 3.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MutS_III PF05192.13 gi|119719417|ref|YP_919912.1| - 0.026 14.3 1.5 0.89 9.2 1.0 2.4 1 1 0 1 1 1 0 MutS domain III PduV-EutP PF10662.4 gi|119719417|ref|YP_919912.1| - 0.03 13.8 0.1 2.3 7.6 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Mur_ligase_M PF08245.7 gi|119719417|ref|YP_919912.1| - 0.035 14.1 0.0 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 Mur ligase middle domain Gtr1_RagA PF04670.7 gi|119719417|ref|YP_919912.1| - 0.04 13.0 0.0 0.093 11.8 0.0 1.6 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_28 PF13521.1 gi|119719417|ref|YP_919912.1| - 0.041 13.8 0.3 0.099 12.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain 6PF2K PF01591.13 gi|119719417|ref|YP_919912.1| - 0.041 12.9 0.0 0.073 12.1 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase TPP_enzyme_M PF00205.17 gi|119719417|ref|YP_919912.1| - 0.051 13.3 0.0 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain KTI12 PF08433.5 gi|119719417|ref|YP_919912.1| - 0.056 12.6 0.0 0.13 11.4 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_24 PF13479.1 gi|119719417|ref|YP_919912.1| - 0.062 12.8 0.3 3.8 7.0 0.3 2.6 2 0 0 2 2 2 0 AAA domain Glyco_trans_4_4 PF13579.1 gi|119719417|ref|YP_919912.1| - 0.069 13.2 0.4 0.21 11.7 0.1 2.0 2 0 0 2 2 1 0 Glycosyl transferase 4-like domain G-alpha PF00503.15 gi|119719417|ref|YP_919912.1| - 0.11 11.1 0.0 0.19 10.3 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit NAD_binding_5 PF07994.7 gi|119719417|ref|YP_919912.1| - 0.14 11.5 0.7 1 8.7 0.1 2.1 1 1 1 2 2 2 0 Myo-inositol-1-phosphate synthase DUF3782 PF12644.2 gi|119719417|ref|YP_919912.1| - 0.21 11.3 2.8 1.2 8.9 0.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) Lactamase_B PF00753.22 gi|119719418|ref|YP_919913.1| - 3.5e-19 69.2 0.3 6.8e-19 68.2 0.2 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|119719418|ref|YP_919913.1| - 1.4e-08 34.8 0.0 2.7e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin HSP20 PF00011.16 gi|119719419|ref|YP_919914.1| - 4.3e-15 55.4 2.0 5.6e-15 55.0 1.4 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|119719419|ref|YP_919914.1| - 0.0032 17.9 0.1 0.014 15.9 0.1 2.0 1 1 1 2 2 2 1 CS domain Carbpep_Y_N PF05388.6 gi|119719419|ref|YP_919914.1| - 0.058 13.5 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Carboxypeptidase Y pro-peptide P22_AR_N PF10547.4 gi|119719419|ref|YP_919914.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 P22_AR N-terminal domain SUI1 PF01253.17 gi|119719420|ref|YP_919915.1| - 1.6e-24 85.5 0.2 2e-24 85.2 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DUF4032 PF13224.1 gi|119719420|ref|YP_919915.1| - 0.027 14.1 0.0 0.033 13.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4032) Arginase PF00491.16 gi|119719423|ref|YP_919918.1| - 1.5e-62 211.4 0.0 1.8e-62 211.1 0.0 1.1 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.8 gi|119719424|ref|YP_919919.1| - 5.6e-05 22.5 4.6 0.00015 21.1 3.2 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|119719424|ref|YP_919919.1| - 0.00061 18.9 1.0 0.14 11.4 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-CSL PF05207.8 gi|119719424|ref|YP_919919.1| - 0.002 17.5 0.3 0.0026 17.2 0.2 1.2 1 0 0 1 1 1 1 CSL zinc finger IBR PF01485.16 gi|119719424|ref|YP_919919.1| - 0.0025 17.6 0.2 0.0029 17.4 0.1 1.1 1 0 0 1 1 1 1 IBR domain Zn-ribbon_8 PF09723.5 gi|119719424|ref|YP_919919.1| - 0.0043 16.9 2.8 0.012 15.5 2.0 1.7 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|119719424|ref|YP_919919.1| - 0.0057 16.3 0.2 0.0064 16.1 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-C2H2_4 PF13894.1 gi|119719424|ref|YP_919919.1| - 0.0059 16.8 1.2 3.1 8.3 0.1 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|119719424|ref|YP_919919.1| - 0.007 16.6 1.7 1 9.8 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type DUF2072 PF09845.4 gi|119719424|ref|YP_919919.1| - 0.014 15.3 0.2 0.015 15.2 0.2 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) OrfB_Zn_ribbon PF07282.6 gi|119719424|ref|YP_919919.1| - 0.016 14.8 0.4 0.021 14.4 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain YhfH PF14149.1 gi|119719424|ref|YP_919919.1| - 0.025 14.3 0.5 2.1 8.2 0.0 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-FPG_IleRS PF06827.9 gi|119719424|ref|YP_919919.1| - 0.026 14.1 0.2 0.026 14.1 0.1 1.9 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2HC5 PF06221.8 gi|119719424|ref|YP_919919.1| - 0.027 14.1 0.1 0.033 13.9 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc_ribbon_4 PF13717.1 gi|119719424|ref|YP_919919.1| - 0.031 13.9 1.5 5.3 6.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|119719424|ref|YP_919919.1| - 0.035 13.9 1.1 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|119719424|ref|YP_919919.1| - 0.035 13.4 1.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding C1_1 PF00130.17 gi|119719424|ref|YP_919919.1| - 0.036 13.7 0.3 0.043 13.5 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2296 PF10058.4 gi|119719424|ref|YP_919919.1| - 0.04 13.6 2.2 0.66 9.7 0.1 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-ISL3 PF14690.1 gi|119719424|ref|YP_919919.1| - 0.046 13.7 1.6 0.6 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Desulfoferrod_N PF06397.7 gi|119719424|ref|YP_919919.1| - 0.057 12.8 1.6 0.58 9.5 0.1 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain SprT-like PF10263.4 gi|119719424|ref|YP_919919.1| - 0.063 12.9 0.6 0.065 12.8 0.4 1.0 1 0 0 1 1 1 0 SprT-like family UPF0547 PF10571.4 gi|119719424|ref|YP_919919.1| - 0.063 12.9 2.7 2.7 7.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.3 gi|119719424|ref|YP_919919.1| - 0.069 13.0 5.1 0.52 10.2 0.4 2.2 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.1 gi|119719424|ref|YP_919919.1| - 0.072 12.8 0.6 0.22 11.2 0.4 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|119719424|ref|YP_919919.1| - 0.079 12.9 1.6 0.28 11.2 1.2 1.8 1 1 1 2 2 2 0 zinc-finger zf-HIT PF04438.11 gi|119719424|ref|YP_919919.1| - 0.098 12.3 2.7 1.1 8.9 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger Mu-like_Com PF10122.4 gi|119719424|ref|YP_919919.1| - 0.1 11.6 1.4 0.14 11.2 1.0 1.3 1 0 0 1 1 1 0 Mu-like prophage protein Com zinc_ribbon_2 PF13240.1 gi|119719424|ref|YP_919919.1| - 0.11 11.9 4.5 1.5 8.4 3.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|119719424|ref|YP_919919.1| - 0.12 11.9 3.8 4.6 6.9 0.3 2.3 2 1 0 2 2 2 0 zinc-ribbon domain PyrI_C PF02748.10 gi|119719424|ref|YP_919919.1| - 0.13 11.7 2.7 4.2 6.8 0.1 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DZR PF12773.2 gi|119719424|ref|YP_919919.1| - 0.14 12.0 1.0 0.45 10.3 0.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|119719424|ref|YP_919919.1| - 0.16 11.5 1.8 2.4 7.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_6 PF13912.1 gi|119719424|ref|YP_919919.1| - 0.25 11.2 0.5 0.25 11.2 0.3 1.8 2 0 0 2 2 2 0 C2H2-type zinc finger zf-BED PF02892.10 gi|119719424|ref|YP_919919.1| - 0.33 10.7 1.6 2.5 7.9 0.0 2.1 1 1 1 2 2 2 0 BED zinc finger Rubredoxin PF00301.15 gi|119719424|ref|YP_919919.1| - 0.53 10.1 3.0 14 5.6 2.1 2.1 1 1 1 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.1 gi|119719424|ref|YP_919919.1| - 0.78 10.1 3.7 6.7 7.1 0.4 2.2 1 1 1 2 2 2 0 Zinc-finger double domain zf-CHCC PF10276.4 gi|119719424|ref|YP_919919.1| - 1.8 8.4 4.2 0.33 10.8 0.5 1.7 1 1 1 2 2 2 0 Zinc-finger domain Methyltransf_26 PF13659.1 gi|119719425|ref|YP_919920.1| - 6.2e-14 52.0 0.0 1e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719425|ref|YP_919920.1| - 2.5e-10 40.9 0.0 4.2e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119719425|ref|YP_919920.1| - 7.7e-08 32.0 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|119719425|ref|YP_919920.1| - 1.5e-06 27.7 0.0 2.3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|119719425|ref|YP_919920.1| - 3.9e-06 27.2 0.0 1.3e-05 25.5 0.0 2.0 3 0 0 3 3 1 1 Methyltransferase domain MTS PF05175.9 gi|119719425|ref|YP_919920.1| - 6.5e-06 25.6 0.0 9.1e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|119719425|ref|YP_919920.1| - 7.6e-06 25.6 0.0 7.8e-05 22.3 0.0 2.0 1 1 1 2 2 2 1 Met-10+ like-protein CMAS PF02353.15 gi|119719425|ref|YP_919920.1| - 0.00017 20.8 0.0 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|119719425|ref|YP_919920.1| - 0.00022 20.7 0.0 0.00032 20.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|119719425|ref|YP_919920.1| - 0.0004 19.9 0.0 0.00075 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_30 PF05430.6 gi|119719425|ref|YP_919920.1| - 0.00064 19.3 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_23 PF13489.1 gi|119719425|ref|YP_919920.1| - 0.0013 18.4 0.0 0.027 14.1 0.0 2.8 1 1 1 2 2 2 1 Methyltransferase domain Spermine_synth PF01564.12 gi|119719425|ref|YP_919920.1| - 0.0035 16.3 0.0 0.0047 15.9 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_24 PF13578.1 gi|119719425|ref|YP_919920.1| - 0.011 16.5 0.0 0.021 15.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|119719425|ref|YP_919920.1| - 0.023 13.7 0.0 0.058 12.4 0.0 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.13 gi|119719425|ref|YP_919920.1| - 0.05 13.0 0.0 0.084 12.3 0.0 1.4 1 0 0 1 1 1 0 DNA methylase Methyltransf_9 PF08003.6 gi|119719425|ref|YP_919920.1| - 0.063 11.9 0.0 0.21 10.2 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|119719425|ref|YP_919920.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|119719425|ref|YP_919920.1| - 0.19 10.8 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) KH_1 PF00013.24 gi|119719426|ref|YP_919921.1| - 6.6e-19 67.3 2.5 2.9e-10 39.6 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|119719426|ref|YP_919921.1| - 2e-11 43.2 1.1 1.2e-06 28.0 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|119719426|ref|YP_919921.1| - 4.1e-05 23.0 2.1 0.0031 17.0 0.0 2.5 2 0 0 2 2 2 2 KH domain RIO1 PF01163.17 gi|119719427|ref|YP_919922.1| - 2.9e-57 193.1 0.0 3.5e-57 192.8 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|119719427|ref|YP_919922.1| - 7.2e-11 42.2 0.4 1e-06 28.6 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Choline_kinase PF01633.15 gi|119719427|ref|YP_919922.1| - 0.00064 19.3 0.0 0.0027 17.3 0.0 2.0 2 0 0 2 2 2 1 Choline/ethanolamine kinase Pkinase PF00069.20 gi|119719427|ref|YP_919922.1| - 0.0011 18.2 0.0 0.0062 15.7 0.0 1.9 2 0 0 2 2 2 1 Protein kinase domain Kdo PF06293.9 gi|119719427|ref|YP_919922.1| - 0.0011 18.0 0.0 1.2 8.1 0.0 2.1 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family DHH PF01368.15 gi|119719428|ref|YP_919923.1| - 5e-09 35.9 0.0 1e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|119719428|ref|YP_919923.1| - 2.3e-06 27.2 0.3 7.6e-06 25.5 0.2 2.0 1 0 0 1 1 1 1 DHHA1 domain Ribosomal_S13_N PF08069.7 gi|119719429|ref|YP_919924.1| - 8.8e-26 89.5 0.4 2.6e-25 88.0 0.2 1.9 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|119719429|ref|YP_919924.1| - 1.5e-23 82.3 0.1 2.3e-23 81.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 RecX PF02631.11 gi|119719429|ref|YP_919924.1| - 0.019 15.1 0.1 5.1 7.3 0.0 2.1 2 0 0 2 2 2 0 RecX family DUF4186 PF13811.1 gi|119719429|ref|YP_919924.1| - 0.046 13.4 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4186) ATP-grasp_2 PF08442.5 gi|119719430|ref|YP_919925.1| - 6.8e-37 126.8 0.0 1.3e-36 125.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|119719430|ref|YP_919925.1| - 4.9e-13 48.9 0.1 8e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|119719430|ref|YP_919925.1| - 9.8e-05 21.6 0.0 0.00055 19.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|119719430|ref|YP_919925.1| - 0.1 11.8 0.0 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain CoA_binding PF02629.14 gi|119719431|ref|YP_919926.1| - 4.3e-31 107.2 1.7 4.1e-30 104.1 0.8 2.3 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.1 gi|119719431|ref|YP_919926.1| - 4.4e-17 61.9 0.0 7.8e-17 61.1 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.14 gi|119719431|ref|YP_919926.1| - 5.3e-11 42.3 0.0 9.3e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.1 gi|119719431|ref|YP_919926.1| - 4.6e-08 33.2 0.3 4.3e-07 30.1 0.1 2.1 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|119719431|ref|YP_919926.1| - 0.011 16.2 0.2 0.028 14.9 0.2 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.23 gi|119719432|ref|YP_919927.1| - 4.2e-27 95.2 0.0 5.6e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family DUF2537 PF10801.3 gi|119719432|ref|YP_919927.1| - 0.061 13.4 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2537) eRF1_2 PF03464.10 gi|119719433|ref|YP_919928.1| - 1e-40 139.1 0.0 3e-40 137.6 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|119719433|ref|YP_919928.1| - 5.5e-35 120.0 0.7 5.5e-35 120.0 0.5 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|119719433|ref|YP_919928.1| - 8.2e-23 80.4 0.0 1.4e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.5 gi|119719433|ref|YP_919928.1| - 0.00019 21.3 3.4 0.00048 20.0 2.3 1.6 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|119719433|ref|YP_919928.1| - 0.00073 19.1 0.7 0.0019 17.8 0.5 1.7 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|119719433|ref|YP_919928.1| - 0.0012 18.3 0.9 0.16 11.5 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719433|ref|YP_919928.1| - 0.0018 17.8 1.1 0.24 11.0 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zf-TFIIB PF13453.1 gi|119719433|ref|YP_919928.1| - 0.0049 16.0 0.9 0.015 14.4 0.6 2.0 1 0 0 1 1 1 1 Transcription factor zinc-finger FUR PF01475.14 gi|119719433|ref|YP_919928.1| - 0.016 15.1 0.6 1.8 8.4 0.2 2.6 2 0 0 2 2 2 0 Ferric uptake regulator family DUF4379 PF14311.1 gi|119719433|ref|YP_919928.1| - 0.018 14.8 2.2 0.039 13.7 1.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) Elf1 PF05129.8 gi|119719433|ref|YP_919928.1| - 0.044 13.4 0.8 0.095 12.3 0.5 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like SprT-like PF10263.4 gi|119719433|ref|YP_919928.1| - 0.074 12.7 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 SprT-like family Terminase_GpA PF05876.7 gi|119719433|ref|YP_919928.1| - 0.11 10.7 0.2 0.19 10.0 0.1 1.3 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) z-alpha PF02295.12 gi|119719433|ref|YP_919928.1| - 0.12 12.1 0.0 0.34 10.7 0.0 1.7 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain SpoU_sub_bind PF08032.7 gi|119719433|ref|YP_919928.1| - 0.16 12.1 2.5 2.3 8.4 0.1 3.2 2 1 1 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding zinc_ribbon_2 PF13240.1 gi|119719433|ref|YP_919928.1| - 0.39 10.2 2.5 3.1 7.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|119719433|ref|YP_919928.1| - 0.76 9.4 4.4 4.1 7.1 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) CpXC PF14353.1 gi|119719433|ref|YP_919928.1| - 1.1 9.2 4.2 22 5.0 0.1 2.9 1 1 1 3 3 3 0 CpXC protein MTS PF05175.9 gi|119719434|ref|YP_919929.1| - 1.5e-11 43.9 0.0 2.2e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|119719434|ref|YP_919929.1| - 1.8e-11 44.0 0.0 2.5e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719434|ref|YP_919929.1| - 9.4e-09 35.8 0.0 1.4e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119719434|ref|YP_919929.1| - 2.3e-08 33.7 0.0 2.9e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|119719434|ref|YP_919929.1| - 9.8e-08 31.7 0.0 1.5e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|119719434|ref|YP_919929.1| - 1.3e-06 27.7 0.1 1.7e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|119719434|ref|YP_919929.1| - 1.9e-05 24.1 0.0 2.4e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|119719434|ref|YP_919929.1| - 0.00026 21.4 0.0 0.00051 20.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|119719434|ref|YP_919929.1| - 0.0013 18.1 0.0 0.002 17.5 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|119719434|ref|YP_919929.1| - 0.0015 18.8 0.0 0.0023 18.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|119719434|ref|YP_919929.1| - 0.0046 16.0 0.0 0.0058 15.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.5 gi|119719434|ref|YP_919929.1| - 0.0072 15.8 0.0 0.0091 15.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|119719434|ref|YP_919929.1| - 0.016 14.3 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_23 PF13489.1 gi|119719434|ref|YP_919929.1| - 0.02 14.5 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119719434|ref|YP_919929.1| - 0.075 13.5 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain ECR1_N PF14382.1 gi|119719435|ref|YP_919930.1| - 5.4e-06 25.5 0.1 1.4e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|119719435|ref|YP_919930.1| - 0.03 14.4 0.6 0.79 9.8 0.4 2.5 1 1 0 1 1 1 0 S1 RNA binding domain EXOSC1 PF10447.4 gi|119719435|ref|YP_919930.1| - 0.03 14.2 0.7 0.24 11.3 0.5 2.2 1 1 0 1 1 1 0 Exosome component EXOSC1/CSL4 DZR PF12773.2 gi|119719435|ref|YP_919930.1| - 0.055 13.3 0.5 0.09 12.6 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|119719435|ref|YP_919930.1| - 0.11 12.2 0.5 0.18 11.6 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-UDP PF14569.1 gi|119719435|ref|YP_919930.1| - 0.17 11.6 1.5 0.41 10.4 0.8 1.8 2 0 0 2 2 2 0 Zinc-binding RING-finger DUF1610 PF07754.6 gi|119719435|ref|YP_919930.1| - 1.1 9.5 0.1 1.1 9.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ogr_Delta PF04606.7 gi|119719435|ref|YP_919930.1| - 2.7 7.7 5.0 18 5.0 0.2 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Cys_rich_KTR PF14205.1 gi|119719435|ref|YP_919930.1| - 6.5 6.2 7.0 0.85 9.1 1.0 2.3 1 1 1 2 2 2 0 Cysteine-rich KTR DUF2067 PF09840.4 gi|119719436|ref|YP_919931.1| - 3.4e-55 186.4 1.9 3.9e-55 186.3 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) NAD_kinase PF01513.16 gi|119719437|ref|YP_919932.1| - 8.9e-27 93.5 0.1 1.1e-26 93.2 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase KaiC PF06745.8 gi|119719438|ref|YP_919933.1| - 2.7e-66 222.9 0.0 3.3e-66 222.6 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|119719438|ref|YP_919933.1| - 3.4e-10 39.6 0.0 4.7e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|119719438|ref|YP_919933.1| - 0.0071 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|119719438|ref|YP_919933.1| - 0.0081 15.6 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Rad51 PF08423.6 gi|119719438|ref|YP_919933.1| - 0.018 13.9 0.2 0.24 10.2 0.0 2.2 2 0 0 2 2 2 0 Rad51 GvpD PF07088.6 gi|119719438|ref|YP_919933.1| - 0.025 12.9 0.2 0.056 11.7 0.0 1.5 2 0 0 2 2 2 0 GvpD gas vesicle protein DnaB_C PF03796.10 gi|119719438|ref|YP_919933.1| - 0.17 10.7 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Pcc1 PF09341.5 gi|119719439|ref|YP_919934.1| - 9.3e-17 60.8 0.3 1.1e-16 60.5 0.2 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|119719440|ref|YP_919935.1| - 0.0034 17.0 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Brix domain AAA_23 PF13476.1 gi|119719441|ref|YP_919936.1| - 3.4e-17 63.4 0.0 3.4e-17 63.4 0.0 4.5 1 1 1 3 3 2 1 AAA domain SMC_N PF02463.14 gi|119719441|ref|YP_919936.1| - 2.4e-13 49.8 0.0 1.5e-12 47.2 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|119719441|ref|YP_919936.1| - 7.3e-11 42.5 9.7 4.9e-06 26.7 1.2 3.3 2 1 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|119719441|ref|YP_919936.1| - 7.9e-09 34.5 25.3 4.5e-07 28.7 7.0 2.7 2 1 0 3 3 3 2 AAA domain NPV_P10 PF05531.7 gi|119719441|ref|YP_919936.1| - 1.1e-05 25.6 9.9 0.038 14.2 0.0 6.1 4 3 2 6 6 5 1 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|119719441|ref|YP_919936.1| - 1.2e-05 24.9 69.5 0.00073 19.1 11.9 5.5 1 1 5 6 6 6 3 IncA protein Phage_GP20 PF06810.6 gi|119719441|ref|YP_919936.1| - 1.4e-05 24.5 30.7 0.069 12.5 0.3 4.4 4 0 0 4 4 4 4 Phage minor structural protein GP20 AAA_29 PF13555.1 gi|119719441|ref|YP_919936.1| - 1.9e-05 24.1 0.0 3.8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|119719441|ref|YP_919936.1| - 8.2e-05 22.9 1.9 0.35 11.1 0.0 4.5 2 1 1 3 3 3 1 ABC transporter IFT57 PF10498.4 gi|119719441|ref|YP_919936.1| - 0.00012 21.0 35.2 0.0081 14.9 4.5 4.1 3 1 1 4 4 4 3 Intra-flagellar transport protein 57 AAA_15 PF13175.1 gi|119719441|ref|YP_919936.1| - 0.00031 19.9 5.3 0.00086 18.4 0.0 3.4 3 1 1 4 4 2 1 AAA ATPase domain AAA_27 PF13514.1 gi|119719441|ref|YP_919936.1| - 0.00092 17.0 40.1 0.007 14.1 5.4 4.4 3 1 1 5 5 5 3 AAA domain AAA_14 PF13173.1 gi|119719441|ref|YP_919936.1| - 0.0014 18.4 1.2 3.4 7.5 0.0 3.9 4 0 0 4 4 3 0 AAA domain Atg14 PF10186.4 gi|119719441|ref|YP_919936.1| - 0.0016 17.4 6.3 0.0016 17.4 4.4 5.0 1 1 4 5 5 5 2 UV radiation resistance protein and autophagy-related subunit 14 LOH1CR12 PF10158.4 gi|119719441|ref|YP_919936.1| - 0.0037 17.0 0.9 0.0037 17.0 0.6 3.5 3 1 1 4 4 4 1 Tumour suppressor protein T4SS PF07996.6 gi|119719441|ref|YP_919936.1| - 0.006 16.4 0.9 0.96 9.2 0.0 3.1 2 1 0 2 2 2 1 Type IV secretion system proteins SbcCD_C PF13558.1 gi|119719441|ref|YP_919936.1| - 0.0065 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Occludin_ELL PF07303.8 gi|119719441|ref|YP_919936.1| - 0.01 16.5 37.0 0.015 15.9 1.4 6.2 3 1 4 7 7 7 1 Occludin homology domain AAA_19 PF13245.1 gi|119719441|ref|YP_919936.1| - 0.014 15.0 0.1 0.071 12.8 0.0 2.2 2 0 0 2 2 1 0 Part of AAA domain BLOC1_2 PF10046.4 gi|119719441|ref|YP_919936.1| - 0.025 14.6 29.7 0.74 9.9 1.4 6.0 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF342 PF03961.8 gi|119719441|ref|YP_919936.1| - 0.037 12.4 43.2 0.28 9.5 5.1 4.2 2 1 1 4 4 4 0 Protein of unknown function (DUF342) ATG16 PF08614.6 gi|119719441|ref|YP_919936.1| - 0.042 13.6 42.1 0.04 13.7 2.8 4.6 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) AAA_25 PF13481.1 gi|119719441|ref|YP_919936.1| - 0.046 13.1 0.2 0.32 10.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|119719441|ref|YP_919936.1| - 0.061 13.3 0.1 0.061 13.3 0.1 3.5 1 1 1 3 3 2 0 AAA ATPase domain DUF948 PF06103.6 gi|119719441|ref|YP_919936.1| - 0.076 12.8 8.7 13 5.7 0.0 5.7 6 1 0 6 6 5 0 Bacterial protein of unknown function (DUF948) DUF4200 PF13863.1 gi|119719441|ref|YP_919936.1| - 0.079 12.9 52.2 0.24 11.3 2.0 6.5 4 2 1 6 6 6 0 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|119719441|ref|YP_919936.1| - 0.079 12.7 26.1 0.6 9.8 0.5 6.0 2 2 4 6 6 6 0 Laminin Domain II GAS PF13851.1 gi|119719441|ref|YP_919936.1| - 0.11 11.6 51.5 0.31 10.1 3.0 4.7 3 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding AAA_22 PF13401.1 gi|119719441|ref|YP_919936.1| - 0.15 12.2 3.9 0.33 11.1 0.0 3.5 3 2 0 3 3 2 0 AAA domain Syntaxin-6_N PF09177.6 gi|119719441|ref|YP_919936.1| - 0.21 11.9 26.2 2.8 8.3 0.4 5.3 4 2 1 5 5 5 0 Syntaxin 6, N-terminal DUF3573 PF12097.3 gi|119719441|ref|YP_919936.1| - 0.42 9.1 2.5 9.4 4.7 0.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3573) NdhM PF10664.4 gi|119719441|ref|YP_919936.1| - 0.44 10.4 4.2 0.73 9.7 0.0 3.2 2 1 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M Mnd1 PF03962.10 gi|119719441|ref|YP_919936.1| - 0.48 10.0 42.0 0.034 13.8 1.8 5.3 3 1 2 5 5 5 0 Mnd1 family PilJ PF13675.1 gi|119719441|ref|YP_919936.1| - 0.54 10.5 17.6 0.97 9.7 0.6 5.2 3 2 1 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1664 PF07889.7 gi|119719441|ref|YP_919936.1| - 0.83 9.4 20.8 4.6 7.0 1.4 5.6 3 1 2 5 5 5 0 Protein of unknown function (DUF1664) DUF3140 PF11338.3 gi|119719441|ref|YP_919936.1| - 1.1 9.4 5.9 1.2 9.2 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3140) RNA_pol_N PF01194.12 gi|119719441|ref|YP_919936.1| - 1.1 9.2 3.0 28 4.8 0.0 3.8 4 0 0 4 4 2 0 RNA polymerases N / 8 kDa subunit Surfac_D-trimer PF09006.6 gi|119719441|ref|YP_919936.1| - 1.4 8.6 5.6 3.7 7.3 0.1 4.3 4 0 0 4 4 3 0 Lung surfactant protein D coiled-coil trimerisation LemA PF04011.7 gi|119719441|ref|YP_919936.1| - 1.5 7.9 13.3 0.099 11.7 4.8 2.3 2 1 0 2 2 2 0 LemA family CHD5 PF04420.9 gi|119719441|ref|YP_919936.1| - 1.8 8.2 6.5 0.32 10.6 0.7 2.7 2 1 0 2 2 1 0 CHD5-like protein KxDL PF10241.4 gi|119719441|ref|YP_919936.1| - 2.3 8.1 14.6 0.56 10.1 0.3 4.4 3 2 0 3 3 3 0 Uncharacterized conserved protein DivIVA PF05103.8 gi|119719441|ref|YP_919936.1| - 2.6 8.0 47.3 2 8.4 1.8 6.6 4 3 2 6 6 6 0 DivIVA protein COG2 PF06148.6 gi|119719441|ref|YP_919936.1| - 2.6 7.8 32.4 0.23 11.3 3.6 5.4 3 1 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Prominin PF05478.6 gi|119719441|ref|YP_919936.1| - 3 5.2 8.5 3.9 4.8 0.3 2.7 1 1 0 2 2 2 0 Prominin Med9 PF07544.8 gi|119719441|ref|YP_919936.1| - 3.6 7.3 39.0 0.9 9.3 6.1 6.1 5 2 0 5 5 4 0 RNA polymerase II transcription mediator complex subunit 9 FlxA PF14282.1 gi|119719441|ref|YP_919936.1| - 4.7 7.1 16.9 6.3 6.8 0.3 4.2 4 1 0 4 4 3 0 FlxA-like protein Fib_alpha PF08702.5 gi|119719441|ref|YP_919936.1| - 5 7.2 19.0 4.8 7.2 0.2 5.2 1 1 5 6 6 6 0 Fibrinogen alpha/beta chain family Sec20 PF03908.8 gi|119719441|ref|YP_919936.1| - 6.6 6.5 11.5 1.2 8.8 0.1 4.7 4 1 1 6 6 5 0 Sec20 Spc24 PF08286.6 gi|119719441|ref|YP_919936.1| - 8.2 6.1 33.5 2.9 7.6 2.0 6.1 4 4 1 5 5 5 0 Spc24 subunit of Ndc80 Snapin_Pallidin PF14712.1 gi|119719441|ref|YP_919936.1| - 8.5 6.7 32.6 0.078 13.2 1.1 6.1 3 2 2 6 6 6 0 Snapin/Pallidin Sec8_exocyst PF04048.9 gi|119719441|ref|YP_919936.1| - 9.1 5.9 22.6 2.6 7.6 0.2 5.3 4 1 1 5 5 5 0 Sec8 exocyst complex component specific domain L51_S25_CI-B8 PF05047.11 gi|119719443|ref|YP_919938.1| - 0.0013 18.4 0.0 0.79 9.4 0.0 2.7 3 0 0 3 3 3 2 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain MoeA_N PF03453.12 gi|119719443|ref|YP_919938.1| - 0.087 12.1 0.1 0.99 8.7 0.0 2.1 2 0 0 2 2 2 0 MoeA N-terminal region (domain I and II) Actin PF00022.14 gi|119719444|ref|YP_919939.1| - 6.7e-18 64.2 0.0 1.1e-17 63.6 0.0 1.3 1 1 0 1 1 1 1 Actin Alba PF01918.16 gi|119719449|ref|YP_919944.1| - 7e-17 60.7 1.1 7e-17 60.7 0.7 1.6 2 0 0 2 2 2 1 Alba Rpp20 PF12328.3 gi|119719449|ref|YP_919944.1| - 0.0029 17.2 0.5 0.0045 16.6 0.3 1.4 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P SpoVS PF04232.7 gi|119719449|ref|YP_919944.1| - 0.16 11.5 1.3 0.2 11.2 0.9 1.1 1 0 0 1 1 1 0 Stage V sporulation protein S (SpoVS) T2SE PF00437.15 gi|119719450|ref|YP_919945.1| - 6.3e-11 41.6 0.0 9.2e-11 41.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|119719450|ref|YP_919945.1| - 4.4e-05 24.3 0.0 0.00015 22.5 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|119719450|ref|YP_919945.1| - 6.8e-05 22.7 0.0 0.00021 21.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|119719450|ref|YP_919945.1| - 0.00025 21.3 0.0 0.00073 19.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|119719450|ref|YP_919945.1| - 0.0011 18.6 0.0 0.003 17.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|119719450|ref|YP_919945.1| - 0.0014 18.6 0.0 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|119719450|ref|YP_919945.1| - 0.0019 18.2 0.0 0.0041 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|119719450|ref|YP_919945.1| - 0.0024 16.9 0.0 0.021 13.8 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|119719450|ref|YP_919945.1| - 0.0027 17.1 0.0 0.0044 16.4 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|119719450|ref|YP_919945.1| - 0.0028 17.8 0.0 0.008 16.3 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|119719450|ref|YP_919945.1| - 0.0031 17.5 0.0 0.0059 16.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|119719450|ref|YP_919945.1| - 0.0049 16.9 0.0 0.013 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|119719450|ref|YP_919945.1| - 0.0079 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|119719450|ref|YP_919945.1| - 0.008 15.6 0.0 0.026 13.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|119719450|ref|YP_919945.1| - 0.0092 15.4 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.13 gi|119719450|ref|YP_919945.1| - 0.0098 15.3 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family KTI12 PF08433.5 gi|119719450|ref|YP_919945.1| - 0.016 14.4 0.0 0.047 12.9 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.12 gi|119719450|ref|YP_919945.1| - 0.02 14.2 0.0 0.11 11.9 0.0 2.1 1 1 1 2 2 2 0 Thymidylate kinase NACHT PF05729.7 gi|119719450|ref|YP_919945.1| - 0.021 14.5 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|119719450|ref|YP_919945.1| - 0.021 14.7 0.0 0.065 13.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain DnaB_C PF03796.10 gi|119719450|ref|YP_919945.1| - 0.025 13.4 0.0 0.042 12.7 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ArgK PF03308.11 gi|119719450|ref|YP_919945.1| - 0.033 12.9 0.0 0.057 12.1 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_3 PF07726.6 gi|119719450|ref|YP_919945.1| - 0.039 13.5 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|119719450|ref|YP_919945.1| - 0.044 13.4 0.0 0.11 12.1 0.0 1.6 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|119719450|ref|YP_919945.1| - 0.055 12.9 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|119719450|ref|YP_919945.1| - 0.058 13.0 0.2 0.17 11.5 0.0 1.9 2 0 0 2 2 1 0 NTPase ATP_bind_1 PF03029.12 gi|119719450|ref|YP_919945.1| - 0.06 12.8 0.0 0.14 11.7 0.0 1.6 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|119719450|ref|YP_919945.1| - 0.068 12.2 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.1 gi|119719450|ref|YP_919945.1| - 0.069 12.7 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|119719450|ref|YP_919945.1| - 0.07 13.3 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 RNA helicase DUF815 PF05673.8 gi|119719450|ref|YP_919945.1| - 0.077 11.9 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ResIII PF04851.10 gi|119719450|ref|YP_919945.1| - 0.12 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|119719450|ref|YP_919945.1| - 0.13 11.0 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|119719450|ref|YP_919945.1| - 0.15 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter CBS PF00571.23 gi|119719452|ref|YP_919947.1| - 1.5e-19 69.4 0.7 1e-11 44.3 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|119719452|ref|YP_919947.1| - 1.6e-13 50.6 1.3 1.6e-13 50.6 0.9 2.1 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|119719452|ref|YP_919947.1| - 2.6e-13 49.5 2.0 6.2e-13 48.3 0.6 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|119719452|ref|YP_919947.1| - 6.5e-09 35.7 0.3 2.9e-08 33.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|119719452|ref|YP_919947.1| - 6.7e-05 23.0 0.2 0.00068 19.7 0.0 2.1 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|119719452|ref|YP_919947.1| - 0.0004 19.7 0.7 0.0037 16.6 0.3 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|119719452|ref|YP_919947.1| - 0.00055 19.6 0.3 0.0019 17.9 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|119719452|ref|YP_919947.1| - 0.00084 18.9 0.3 0.0035 16.9 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|119719452|ref|YP_919947.1| - 0.011 15.4 1.3 0.29 10.8 0.2 3.1 3 0 0 3 3 3 0 Homeodomain-like domain HTH_Tnp_4 PF13613.1 gi|119719452|ref|YP_919947.1| - 0.018 14.5 0.1 0.07 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease HTH_38 PF13936.1 gi|119719452|ref|YP_919947.1| - 0.02 14.4 2.6 0.03 13.8 0.1 2.6 4 0 0 4 4 4 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|119719452|ref|YP_919947.1| - 0.021 14.0 0.8 0.043 13.1 0.2 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|119719452|ref|YP_919947.1| - 0.031 13.9 1.1 0.11 12.1 0.4 2.1 2 0 0 2 2 2 0 MarR family Thioredoxin_3 PF13192.1 gi|119719452|ref|YP_919947.1| - 0.064 13.0 0.1 0.24 11.2 0.0 2.1 3 0 0 3 3 3 0 Thioredoxin domain Aminotran_3 PF00202.16 gi|119719453|ref|YP_919948.1| - 3.4e-119 397.6 0.0 4.2e-119 397.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|119719453|ref|YP_919948.1| - 0.0044 16.0 0.0 0.0069 15.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|119719453|ref|YP_919948.1| - 0.09 11.5 0.0 11 4.6 0.0 2.9 3 0 0 3 3 3 0 Aminotransferase class-V FixO PF02433.10 gi|119719453|ref|YP_919948.1| - 0.16 11.3 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase, mono-heme subunit/FixO POR PF01558.13 gi|119719454|ref|YP_919949.1| - 4.4e-32 111.3 0.6 5.3e-32 111.1 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Biotin_lipoyl_2 PF13533.1 gi|119719454|ref|YP_919949.1| - 0.2 11.3 1.7 0.23 11.1 0.0 1.9 2 0 0 2 2 2 0 Biotin-lipoyl like Fer4 PF00037.22 gi|119719455|ref|YP_919950.1| - 5.2e-15 54.3 14.6 2.5e-08 33.1 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|119719455|ref|YP_919950.1| - 1.8e-11 44.2 17.6 1.4e-09 38.2 6.1 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719455|ref|YP_919950.1| - 1.7e-09 37.2 7.4 2.3e-09 36.8 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119719455|ref|YP_919950.1| - 7.5e-09 35.3 7.2 9.9e-09 34.9 5.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719455|ref|YP_919950.1| - 8.2e-09 34.9 13.2 6.3e-06 25.8 2.2 2.5 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|119719455|ref|YP_919950.1| - 3.2e-07 30.8 11.1 0.0011 19.5 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|119719455|ref|YP_919950.1| - 3.6e-07 30.8 7.6 0.00067 20.3 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|119719455|ref|YP_919950.1| - 7e-07 29.4 9.2 1e-06 28.8 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119719455|ref|YP_919950.1| - 8.6e-07 29.2 2.0 0.019 15.3 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719455|ref|YP_919950.1| - 9.8e-07 28.3 14.3 0.00079 19.2 1.6 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|119719455|ref|YP_919950.1| - 2.9e-05 24.0 13.1 0.0076 16.5 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|119719455|ref|YP_919950.1| - 0.00021 21.5 8.6 0.017 15.5 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|119719455|ref|YP_919950.1| - 0.00063 19.7 10.0 0.015 15.3 7.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|119719455|ref|YP_919950.1| - 0.0014 18.4 4.8 0.0033 17.2 3.4 1.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119719455|ref|YP_919950.1| - 0.009 16.4 6.8 0.26 11.7 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain POR_N PF01855.14 gi|119719456|ref|YP_919951.1| - 1.8e-65 220.7 0.0 2.2e-65 220.4 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|119719456|ref|YP_919951.1| - 4.8e-05 23.2 0.3 0.00014 21.7 0.1 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|119719457|ref|YP_919952.1| - 6.7e-23 80.9 0.2 1.1e-22 80.2 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|119719457|ref|YP_919952.1| - 0.00079 18.4 0.2 0.002 17.1 0.1 1.6 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase YjeF_N PF03853.10 gi|119719457|ref|YP_919952.1| - 0.072 12.6 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus DUF2070 PF09843.4 gi|119719458|ref|YP_919953.1| - 1e-40 139.0 0.0 1.4e-40 138.6 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) SpoU_methylase PF00588.14 gi|119719459|ref|YP_919954.1| - 3.4e-27 95.0 0.0 4.8e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|119719459|ref|YP_919954.1| - 0.0025 17.3 0.0 0.043 13.3 0.0 2.1 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Ribosomal_L16 PF00252.13 gi|119719460|ref|YP_919955.1| - 1.2e-34 118.8 0.0 1.4e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF2192 PF09958.4 gi|119719461|ref|YP_919956.1| - 9.2e-70 234.4 3.6 1e-69 234.3 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_S26e PF01283.14 gi|119719462|ref|YP_919957.1| - 2e-27 95.6 0.5 2.3e-27 95.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e PHD PF00628.24 gi|119719462|ref|YP_919957.1| - 0.015 14.9 0.2 0.56 9.9 0.1 2.2 2 0 0 2 2 2 0 PHD-finger Prok-RING_1 PF14446.1 gi|119719462|ref|YP_919957.1| - 0.025 14.3 1.1 0.028 14.1 0.1 1.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF164 PF02591.10 gi|119719462|ref|YP_919957.1| - 0.04 13.7 0.1 0.57 10.0 0.0 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|119719462|ref|YP_919957.1| - 0.044 13.2 1.0 0.75 9.3 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-dskA_traR PF01258.12 gi|119719462|ref|YP_919957.1| - 0.15 11.7 1.1 0.6 9.9 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Methyltrn_RNA_2 PF04013.7 gi|119719463|ref|YP_919958.1| - 6.2e-28 97.7 0.0 1.3e-27 96.6 0.0 1.5 1 1 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.14 gi|119719463|ref|YP_919958.1| - 0.0059 16.4 0.0 0.0093 15.8 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family PspA_IM30 PF04012.7 gi|119719464|ref|YP_919959.1| - 0.044 13.1 0.4 0.052 12.9 0.3 1.0 1 0 0 1 1 1 0 PspA/IM30 family Lambda_Kil PF06301.6 gi|119719465|ref|YP_919960.1| - 0.097 12.1 0.3 0.32 10.4 0.2 1.9 1 0 0 1 1 1 0 Bacteriophage lambda Kil protein HTH_5 PF01022.15 gi|119719466|ref|YP_919961.1| - 1.4e-09 37.4 0.2 3.8e-09 36.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|119719466|ref|YP_919961.1| - 1.7e-09 37.3 0.2 9.4e-09 34.9 0.1 2.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF35_N PF12172.3 gi|119719466|ref|YP_919961.1| - 0.00091 19.0 0.8 0.0018 18.1 0.6 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HTH_34 PF13601.1 gi|119719466|ref|YP_919961.1| - 0.0029 17.5 0.0 0.007 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|119719466|ref|YP_919961.1| - 0.011 15.0 0.0 0.023 14.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|119719466|ref|YP_919961.1| - 0.018 14.6 0.1 0.065 12.9 0.1 1.9 1 0 0 1 1 1 0 MarR family NRDD PF13597.1 gi|119719466|ref|YP_919961.1| - 0.023 12.7 0.0 0.032 12.2 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HxlR PF01638.12 gi|119719466|ref|YP_919961.1| - 0.032 13.8 0.0 0.1 12.2 0.0 1.9 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|119719466|ref|YP_919961.1| - 0.051 13.9 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|119719466|ref|YP_919961.1| - 0.19 11.8 0.0 0.43 10.6 0.0 1.6 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) zf-ribbon_3 PF13248.1 gi|119719466|ref|YP_919961.1| - 0.33 10.2 1.9 0.6 9.3 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|119719466|ref|YP_919961.1| - 1.3 9.0 3.4 6 6.9 2.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Rad60-SLD PF11976.3 gi|119719467|ref|YP_919962.1| - 0.11 12.1 0.1 0.26 11.0 0.1 1.7 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like UPF0020 PF01170.13 gi|119719469|ref|YP_919964.1| - 6.6e-29 100.7 0.0 1.3e-28 99.7 0.0 1.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|119719469|ref|YP_919964.1| - 3.9e-20 72.0 0.1 2.4e-19 69.5 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|119719469|ref|YP_919964.1| - 1.5e-12 47.2 0.0 2.6e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|119719469|ref|YP_919964.1| - 3.4e-10 39.6 0.0 6.2e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|119719469|ref|YP_919964.1| - 1.3e-09 38.0 0.9 2.5e-09 37.1 0.6 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.7 gi|119719469|ref|YP_919964.1| - 8e-06 26.2 0.0 2.5e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719469|ref|YP_919964.1| - 5.9e-05 23.6 0.0 0.00016 22.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|119719469|ref|YP_919964.1| - 0.0031 16.9 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|119719469|ref|YP_919964.1| - 0.0038 16.3 0.0 0.0064 15.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|119719469|ref|YP_919964.1| - 0.015 15.6 0.0 0.04 14.2 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|119719469|ref|YP_919964.1| - 0.12 11.7 0.0 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 DNA methylase AviRa PF11599.3 gi|119719469|ref|YP_919964.1| - 0.14 11.1 0.3 1.5 7.7 0.0 2.6 3 1 1 4 4 4 0 RRNA methyltransferase AviRa eRF1_1 PF03463.10 gi|119719470|ref|YP_919965.1| - 1e-19 70.3 0.0 2.3e-19 69.2 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|119719470|ref|YP_919965.1| - 4.3e-10 39.8 0.3 1.2e-09 38.3 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 3 DUF1464 PF07318.7 gi|119719470|ref|YP_919965.1| - 0.00088 18.1 0.5 0.0014 17.5 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) eRF1_2 PF03464.10 gi|119719470|ref|YP_919965.1| - 0.012 15.9 0.0 0.024 14.9 0.0 1.6 1 0 0 1 1 1 0 eRF1 domain 2 EMG1 PF03587.9 gi|119719471|ref|YP_919966.1| - 2.5e-48 164.0 0.0 2.8e-48 163.8 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Lambda_Kil PF06301.6 gi|119719473|ref|YP_919968.1| - 0.044 13.1 0.5 0.098 12.0 0.3 1.5 1 0 0 1 1 1 0 Bacteriophage lambda Kil protein Fapy_DNA_glyco PF01149.19 gi|119719473|ref|YP_919968.1| - 0.093 13.0 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase N-terminal domain Rpr2 PF04032.11 gi|119719474|ref|YP_919969.1| - 1.4e-16 60.0 0.1 1.7e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2082 PF09855.4 gi|119719474|ref|YP_919969.1| - 0.0029 17.4 2.6 0.016 15.0 1.8 2.0 1 1 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|119719474|ref|YP_919969.1| - 0.0033 16.5 0.3 0.63 9.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|119719474|ref|YP_919969.1| - 0.051 13.3 0.1 0.085 12.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|119719474|ref|YP_919969.1| - 0.1 12.1 0.7 9.3 5.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|119719474|ref|YP_919969.1| - 0.68 9.7 5.3 1.3 8.8 0.3 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2688 PF10892.3 gi|119719474|ref|YP_919969.1| - 1 9.0 3.0 2.5 7.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) DUF402 PF04167.8 gi|119719475|ref|YP_919970.1| - 2.2e-14 53.0 0.0 3.7e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|119719475|ref|YP_919970.1| - 3e-06 26.6 0.0 4.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family HIT PF01230.18 gi|119719476|ref|YP_919971.1| - 6.7e-14 52.2 0.0 9.2e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|119719476|ref|YP_919971.1| - 1.3e-08 35.0 0.0 1.8e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|119719476|ref|YP_919971.1| - 2.3e-06 27.2 0.1 5.5e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 Protein similar to CwfJ C-terminus 1 GTP_EFTU PF00009.22 gi|119719477|ref|YP_919972.1| - 2.2e-41 141.3 0.0 3.5e-41 140.6 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|119719477|ref|YP_919972.1| - 3.2e-28 97.6 0.2 6.1e-28 96.7 0.1 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|119719477|ref|YP_919972.1| - 1e-06 28.7 0.9 3e-06 27.2 0.7 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|119719477|ref|YP_919972.1| - 0.00017 21.5 0.0 0.00039 20.3 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|119719477|ref|YP_919972.1| - 0.038 13.4 0.2 5.3 6.5 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation A2L_zn_ribbon PF08792.5 gi|119719477|ref|YP_919972.1| - 0.053 12.9 0.6 0.84 9.1 0.0 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain Miro PF08477.8 gi|119719477|ref|YP_919972.1| - 0.056 13.9 0.0 0.21 12.0 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein FeoB_N PF02421.13 gi|119719477|ref|YP_919972.1| - 0.098 11.9 0.2 13 5.0 0.0 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B tRNA-synt_1d PF00750.14 gi|119719478|ref|YP_919973.1| - 1.9e-43 148.6 0.0 1.7e-25 89.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|119719478|ref|YP_919973.1| - 7.3e-30 103.3 0.2 2.4e-29 101.7 0.0 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1g PF09334.6 gi|119719478|ref|YP_919973.1| - 0.00092 17.9 0.1 0.01 14.5 0.1 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|119719478|ref|YP_919973.1| - 0.0044 15.0 0.3 0.047 11.6 0.1 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|119719478|ref|YP_919973.1| - 0.054 12.6 0.0 0.16 11.0 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|119719478|ref|YP_919973.1| - 0.13 10.8 0.1 3.5 6.1 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) Lambda_Kil PF06301.6 gi|119719479|ref|YP_919974.1| - 0.034 13.5 0.5 0.098 12.0 0.3 1.7 1 0 0 1 1 1 0 Bacteriophage lambda Kil protein DUF2580 PF10824.3 gi|119719479|ref|YP_919974.1| - 0.075 13.3 0.0 0.22 11.9 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2580) Proho_convert PF12177.3 gi|119719480|ref|YP_919975.1| - 0.041 13.4 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 Prohormone convertase enzyme tRNA-synt_1 PF00133.17 gi|119719481|ref|YP_919976.1| - 5.1e-60 203.1 0.0 5.4e-42 143.6 0.0 3.4 4 0 0 4 4 4 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|119719481|ref|YP_919976.1| - 8.1e-27 93.8 0.1 9e-11 41.0 0.0 4.1 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|119719481|ref|YP_919976.1| - 9.8e-21 74.1 1.0 1.8e-20 73.2 0.7 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|119719481|ref|YP_919976.1| - 9.9e-12 44.5 0.0 1.8e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|119719481|ref|YP_919976.1| - 1e-07 31.3 0.0 2.4e-05 23.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|119719481|ref|YP_919976.1| - 0.0036 16.0 0.1 0.029 13.0 0.0 2.5 3 1 0 3 3 3 1 tRNA synthetases class I (K) Dam PF05869.6 gi|119719481|ref|YP_919976.1| - 0.11 11.9 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) Hist_deacetyl PF00850.14 gi|119719483|ref|YP_919978.1| - 8e-69 232.2 0.0 9.7e-69 232.0 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain POR PF01558.13 gi|119719484|ref|YP_919979.1| - 4.3e-38 130.9 0.0 5e-38 130.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|119719485|ref|YP_919980.1| - 3.1e-14 51.8 16.4 1e-08 34.3 4.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119719485|ref|YP_919980.1| - 1.1e-11 44.3 10.1 1.4e-11 44.0 7.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719485|ref|YP_919980.1| - 1.8e-10 40.1 16.1 1.1e-06 28.1 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119719485|ref|YP_919980.1| - 2.7e-10 39.8 21.8 1.2e-07 31.4 8.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119719485|ref|YP_919980.1| - 1.9e-08 34.5 10.5 2.8e-08 33.9 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719485|ref|YP_919980.1| - 2.8e-08 33.2 13.3 0.0006 19.5 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119719485|ref|YP_919980.1| - 2e-07 31.1 10.2 2.8e-07 30.6 7.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119719485|ref|YP_919980.1| - 2.4e-07 31.4 8.6 0.00018 22.1 1.3 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|119719485|ref|YP_919980.1| - 0.00021 21.6 10.0 0.052 13.9 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|119719485|ref|YP_919980.1| - 0.00024 21.4 7.6 0.021 15.2 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719485|ref|YP_919980.1| - 0.00033 20.6 13.0 0.0045 16.9 9.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|119719485|ref|YP_919980.1| - 0.00035 21.0 11.9 0.015 15.8 2.2 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|119719485|ref|YP_919980.1| - 0.0014 18.8 11.7 0.029 14.7 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|119719485|ref|YP_919980.1| - 0.0097 16.2 10.7 0.28 11.5 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|119719485|ref|YP_919980.1| - 0.017 15.0 6.0 0.023 14.5 4.1 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|119719485|ref|YP_919980.1| - 0.11 13.1 7.7 0.11 13.1 5.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|119719486|ref|YP_919981.1| - 8.8e-74 247.8 0.0 1.1e-73 247.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|119719486|ref|YP_919981.1| - 0.00062 19.6 0.1 0.002 18.0 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain DUF2173 PF09941.4 gi|119719486|ref|YP_919981.1| - 0.1 12.5 0.0 0.32 10.9 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) TPP_enzyme_C PF02775.16 gi|119719487|ref|YP_919982.1| - 4.2e-26 91.3 0.2 7.2e-26 90.6 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Topoisom_bac PF01131.15 gi|119719488|ref|YP_919983.1| - 5e-97 325.2 0.0 7.7e-97 324.6 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|119719488|ref|YP_919983.1| - 3.3e-22 78.3 0.0 9.5e-22 76.8 0.0 1.9 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|119719488|ref|YP_919983.1| - 5.3e-13 48.8 0.0 4.5e-11 42.5 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|119719488|ref|YP_919983.1| - 2.2e-07 30.6 0.0 0.038 13.8 0.0 3.9 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|119719488|ref|YP_919983.1| - 0.00035 20.4 0.0 0.00073 19.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|119719488|ref|YP_919983.1| - 0.011 15.1 0.1 0.047 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|119719488|ref|YP_919983.1| - 0.019 14.2 0.0 0.063 12.5 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein Toprim_4 PF13662.1 gi|119719488|ref|YP_919983.1| - 0.027 14.4 0.0 0.1 12.6 0.0 2.0 1 0 0 1 1 1 0 Toprim domain Antiterm PF03589.8 gi|119719488|ref|YP_919983.1| - 0.067 13.2 0.2 0.44 10.6 0.1 2.3 2 0 0 2 2 2 0 Antitermination protein SecA_DEAD PF07517.9 gi|119719488|ref|YP_919983.1| - 0.11 11.7 0.1 0.45 9.7 0.0 1.9 2 1 0 2 2 2 0 SecA DEAD-like domain DZR PF12773.2 gi|119719488|ref|YP_919983.1| - 0.18 11.6 5.8 0.1 12.4 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|119719488|ref|YP_919983.1| - 0.42 9.9 4.5 1.3 8.3 0.1 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|119719488|ref|YP_919983.1| - 0.73 9.1 8.3 1.3 8.3 0.2 3.1 2 1 1 3 3 3 0 zinc-ribbon domain AAA_19 PF13245.1 gi|119719488|ref|YP_919983.1| - 0.87 9.3 5.9 0.26 11.0 0.2 2.9 3 0 0 3 3 3 0 Part of AAA domain Lar_restr_allev PF14354.1 gi|119719488|ref|YP_919983.1| - 3.2 8.1 4.3 15 6.0 0.1 2.8 2 1 1 3 3 3 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|119719488|ref|YP_919983.1| - 4.6 7.2 7.9 3.3 7.7 2.2 2.9 2 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|119719488|ref|YP_919983.1| - 8.4 6.0 7.3 27 4.4 1.7 3.2 2 1 2 4 4 4 0 zinc-ribbon domain CTP_transf_2 PF01467.21 gi|119719489|ref|YP_919984.1| - 3.6e-12 46.6 0.0 4.5e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase AsnC_trans_reg PF01037.16 gi|119719490|ref|YP_919985.1| - 1.2e-16 60.1 0.2 1.3e-16 60.0 0.1 1.0 1 0 0 1 1 1 1 AsnC family NapD PF03927.8 gi|119719490|ref|YP_919985.1| - 0.0056 16.4 0.1 0.13 12.1 0.0 2.1 1 1 0 1 1 1 1 NapD protein ACT_4 PF13291.1 gi|119719490|ref|YP_919985.1| - 0.03 14.6 0.6 8.1 6.8 0.0 2.5 2 1 0 2 2 2 0 ACT domain Rib_5-P_isom_A PF06026.9 gi|119719490|ref|YP_919985.1| - 0.08 12.2 0.1 0.16 11.3 0.1 1.5 1 1 1 2 2 2 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HMA PF00403.21 gi|119719490|ref|YP_919985.1| - 0.13 12.4 0.1 0.19 11.8 0.1 1.2 1 0 0 1 1 1 0 Heavy-metal-associated domain DUF359 PF04019.7 gi|119719491|ref|YP_919986.1| - 3.2e-30 103.9 0.0 3.9e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) AsnC_trans_reg PF01037.16 gi|119719492|ref|YP_919987.1| - 1.4e-17 63.1 0.2 2.4e-17 62.4 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|119719492|ref|YP_919987.1| - 2.4e-17 62.1 0.0 5.5e-17 61.0 0.0 1.6 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|119719492|ref|YP_919987.1| - 2.8e-16 58.6 0.5 1.2e-15 56.6 0.1 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|119719492|ref|YP_919987.1| - 1.3e-06 27.9 0.1 3.7e-06 26.4 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|119719492|ref|YP_919987.1| - 7e-05 22.5 0.0 0.00017 21.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|119719492|ref|YP_919987.1| - 0.0001 21.9 0.0 0.00029 20.4 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|119719492|ref|YP_919987.1| - 0.00012 21.6 0.3 0.00041 20.0 0.0 1.9 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.7 gi|119719492|ref|YP_919987.1| - 0.00015 21.1 0.1 0.00053 19.4 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 ACT_4 PF13291.1 gi|119719492|ref|YP_919987.1| - 0.00081 19.6 0.4 0.031 14.5 0.0 2.7 2 1 0 2 2 2 1 ACT domain HTH_27 PF13463.1 gi|119719492|ref|YP_919987.1| - 0.00091 19.5 0.3 0.0052 17.0 0.0 2.2 2 1 1 3 3 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|119719492|ref|YP_919987.1| - 0.001 18.6 0.0 0.0029 17.2 0.0 1.8 1 1 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|119719492|ref|YP_919987.1| - 0.0015 18.0 0.1 0.0041 16.6 0.0 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|119719492|ref|YP_919987.1| - 0.0016 18.1 0.1 0.0034 17.0 0.1 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.14 gi|119719492|ref|YP_919987.1| - 0.0017 18.0 0.4 0.0044 16.6 0.0 2.1 2 2 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.14 gi|119719492|ref|YP_919987.1| - 0.0021 17.3 0.6 0.0043 16.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family DUF2250 PF10007.4 gi|119719492|ref|YP_919987.1| - 0.0022 17.8 2.0 0.0063 16.3 0.1 2.2 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|119719492|ref|YP_919987.1| - 0.0025 17.7 0.5 0.0089 15.9 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|119719492|ref|YP_919987.1| - 0.0029 17.1 0.0 0.0062 16.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|119719492|ref|YP_919987.1| - 0.0044 16.1 0.0 0.0078 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.5 gi|119719492|ref|YP_919987.1| - 0.0048 16.5 0.0 0.0097 15.5 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator B-block_TFIIIC PF04182.7 gi|119719492|ref|YP_919987.1| - 0.0065 16.2 0.0 0.0094 15.7 0.0 1.4 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_Tnp_IS630 PF01710.11 gi|119719492|ref|YP_919987.1| - 0.0066 16.1 0.6 0.081 12.6 0.0 2.1 2 0 0 2 2 2 1 Transposase HTH_Crp_2 PF13545.1 gi|119719492|ref|YP_919987.1| - 0.013 15.2 0.3 0.13 12.0 0.1 2.3 2 1 1 3 3 2 0 Crp-like helix-turn-helix domain NapD PF03927.8 gi|119719492|ref|YP_919987.1| - 0.017 14.9 0.5 0.034 13.9 0.3 1.5 1 0 0 1 1 1 0 NapD protein Sigma70_r4 PF04545.11 gi|119719492|ref|YP_919987.1| - 0.017 14.4 0.0 0.044 13.1 0.0 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|119719492|ref|YP_919987.1| - 0.021 14.3 0.1 0.26 10.9 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain HTH_34 PF13601.1 gi|119719492|ref|YP_919987.1| - 0.024 14.6 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|119719492|ref|YP_919987.1| - 0.025 14.1 0.1 0.066 12.7 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_6 PF01418.12 gi|119719492|ref|YP_919987.1| - 0.035 13.8 0.1 0.069 12.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_Tnp_4 PF13613.1 gi|119719492|ref|YP_919987.1| - 0.038 13.5 0.0 0.072 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_5 PF01022.15 gi|119719492|ref|YP_919987.1| - 0.044 13.4 0.1 0.096 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|119719492|ref|YP_919987.1| - 0.048 13.7 0.1 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HxlR PF01638.12 gi|119719492|ref|YP_919987.1| - 0.055 13.1 0.1 0.14 11.8 0.0 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_40 PF14493.1 gi|119719492|ref|YP_919987.1| - 0.057 13.6 0.7 0.16 12.2 0.2 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|119719492|ref|YP_919987.1| - 0.059 13.3 0.0 0.18 11.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain SpoIIID PF12116.3 gi|119719492|ref|YP_919987.1| - 0.061 13.2 0.2 0.16 11.9 0.2 1.8 1 0 0 1 1 1 0 Stage III sporulation protein D RNase_PH PF01138.16 gi|119719493|ref|YP_919988.1| - 6.3e-28 97.7 0.0 1e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|119719493|ref|YP_919988.1| - 1.1e-16 60.4 0.2 2.7e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|119719494|ref|YP_919989.1| - 5e-36 123.9 0.0 6.8e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|119719494|ref|YP_919989.1| - 2e-17 62.8 0.1 3.5e-17 62.0 0.1 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|119719495|ref|YP_919990.1| - 6.7e-12 44.8 1.5 1.4e-11 43.8 0.4 2.0 2 0 0 2 2 2 1 KH domain S1 PF00575.18 gi|119719495|ref|YP_919990.1| - 0.00031 20.7 0.4 0.00031 20.7 0.3 2.7 3 0 0 3 3 3 1 S1 RNA binding domain KH_3 PF13014.1 gi|119719495|ref|YP_919990.1| - 0.00047 19.7 2.2 0.00072 19.1 0.5 2.2 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|119719495|ref|YP_919990.1| - 0.0023 17.4 0.7 0.0055 16.2 0.5 1.7 1 0 0 1 1 1 1 KH domain SBDS PF01172.13 gi|119719496|ref|YP_919991.1| - 3.7e-24 84.3 0.1 6.1e-24 83.6 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|119719496|ref|YP_919991.1| - 9.5e-21 73.7 0.3 1.4e-20 73.2 0.2 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|119719496|ref|YP_919991.1| - 0.025 14.4 0.0 0.055 13.3 0.0 1.6 1 0 0 1 1 1 0 Elongation factor G C-terminus DUF4426 PF14467.1 gi|119719496|ref|YP_919991.1| - 0.074 12.8 0.1 0.69 9.7 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4426) Proteasome PF00227.21 gi|119719497|ref|YP_919992.1| - 2.2e-58 196.6 0.0 2.8e-58 196.3 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|119719497|ref|YP_919992.1| - 2.6e-15 55.4 0.3 5e-15 54.4 0.2 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature ATP_bind_1 PF03029.12 gi|119719498|ref|YP_919993.1| - 5e-48 163.7 0.0 6e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|119719498|ref|YP_919993.1| - 1.9e-06 27.4 0.0 2.3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|119719498|ref|YP_919993.1| - 0.0001 22.3 0.1 0.00021 21.3 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|119719498|ref|YP_919993.1| - 0.00062 19.2 0.0 0.002 17.6 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.1 gi|119719498|ref|YP_919993.1| - 0.00069 19.2 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|119719498|ref|YP_919993.1| - 0.00087 19.0 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|119719498|ref|YP_919993.1| - 0.0014 18.3 0.0 0.003 17.3 0.0 1.6 2 0 0 2 2 2 1 Archaeal ATPase GTP_EFTU PF00009.22 gi|119719498|ref|YP_919993.1| - 0.0015 17.9 0.0 0.047 13.1 0.0 2.5 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_PrkA PF08298.6 gi|119719498|ref|YP_919993.1| - 0.0016 17.1 0.1 0.0025 16.5 0.1 1.2 1 0 0 1 1 1 1 PrkA AAA domain AAA_22 PF13401.1 gi|119719498|ref|YP_919993.1| - 0.003 17.7 0.0 0.0093 16.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|119719498|ref|YP_919993.1| - 0.003 16.3 0.0 2.2 7.0 0.0 2.6 3 0 0 3 3 3 2 ArgK protein AAA_33 PF13671.1 gi|119719498|ref|YP_919993.1| - 0.0039 17.0 0.0 0.009 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|119719498|ref|YP_919993.1| - 0.007 15.7 0.3 0.023 14.0 0.1 2.1 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|119719498|ref|YP_919993.1| - 0.0079 15.3 0.0 0.057 12.5 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|119719498|ref|YP_919993.1| - 0.0084 15.8 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|119719498|ref|YP_919993.1| - 0.011 15.3 0.1 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|119719498|ref|YP_919993.1| - 0.014 15.3 0.0 0.037 13.9 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|119719498|ref|YP_919993.1| - 0.015 14.7 0.0 0.059 12.7 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein PhoH PF02562.11 gi|119719498|ref|YP_919993.1| - 0.027 13.6 0.0 0.063 12.4 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein PduV-EutP PF10662.4 gi|119719498|ref|YP_919993.1| - 0.029 13.8 0.1 0.97 8.9 0.0 2.9 4 0 0 4 4 3 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|119719498|ref|YP_919993.1| - 0.029 13.8 0.0 0.045 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|119719498|ref|YP_919993.1| - 0.05 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|119719498|ref|YP_919993.1| - 0.053 12.4 0.0 0.094 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|119719498|ref|YP_919993.1| - 0.061 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|119719498|ref|YP_919993.1| - 0.061 13.0 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|119719498|ref|YP_919993.1| - 0.063 13.1 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|119719498|ref|YP_919993.1| - 0.065 13.5 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 ABC transporter cobW PF02492.14 gi|119719498|ref|YP_919993.1| - 0.13 11.7 0.1 0.62 9.4 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA12 PF10443.4 gi|119719498|ref|YP_919993.1| - 0.15 10.5 0.0 0.21 10.0 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein Cdc6_C PF09079.6 gi|119719499|ref|YP_919994.1| - 5.6e-24 83.6 0.4 8.3e-23 79.9 0.1 2.4 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|119719499|ref|YP_919994.1| - 9.7e-14 51.7 2.6 2.7e-12 47.0 0.2 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|119719499|ref|YP_919994.1| - 7e-13 48.8 0.2 1.8e-12 47.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|119719499|ref|YP_919994.1| - 2.7e-10 40.5 0.0 5.5e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|119719499|ref|YP_919994.1| - 4.2e-08 33.1 0.2 1.1e-07 31.7 0.2 1.7 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|119719499|ref|YP_919994.1| - 1.7e-05 23.8 0.0 2.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.4 gi|119719499|ref|YP_919994.1| - 0.00017 20.6 0.0 0.0002 20.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_32 PF13654.1 gi|119719499|ref|YP_919994.1| - 0.00043 19.0 3.2 0.02 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|119719499|ref|YP_919994.1| - 0.00079 18.5 1.5 0.34 9.8 0.2 2.9 3 0 0 3 3 3 2 KAP family P-loop domain DUF815 PF05673.8 gi|119719499|ref|YP_919994.1| - 0.0015 17.4 0.0 0.004 16.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|119719499|ref|YP_919994.1| - 0.0018 17.7 0.0 0.0043 16.5 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|119719499|ref|YP_919994.1| - 0.0025 17.5 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|119719499|ref|YP_919994.1| - 0.0027 17.4 0.4 0.0096 15.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|119719499|ref|YP_919994.1| - 0.0058 16.5 0.1 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|119719499|ref|YP_919994.1| - 0.0077 15.7 0.3 0.27 10.6 0.1 2.3 1 1 1 2 2 2 1 AAA-like domain DEAD PF00270.24 gi|119719499|ref|YP_919994.1| - 0.0077 15.7 0.9 3.3 7.1 0.1 2.4 1 1 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|119719499|ref|YP_919994.1| - 0.013 15.1 0.2 0.049 13.3 0.2 2.1 1 1 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|119719499|ref|YP_919994.1| - 0.026 14.8 0.4 0.065 13.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|119719499|ref|YP_919994.1| - 0.026 14.3 0.3 0.95 9.2 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|119719499|ref|YP_919994.1| - 0.042 14.6 2.4 0.19 12.5 1.7 2.3 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|119719499|ref|YP_919994.1| - 0.078 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Ribosomal_S13 PF00416.17 gi|119719499|ref|YP_919994.1| - 0.091 13.2 0.2 0.32 11.4 0.1 1.9 1 0 0 1 1 1 0 Ribosomal protein S13/S18 TrwB_AAD_bind PF10412.4 gi|119719499|ref|YP_919994.1| - 0.1 11.2 0.0 0.66 8.5 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Bac_DnaA PF00308.13 gi|119719499|ref|YP_919994.1| - 0.15 11.6 1.6 2.8 7.5 0.0 2.4 2 1 0 2 2 2 0 Bacterial dnaA protein tRNA-synt_1b PF00579.20 gi|119719500|ref|YP_919995.1| - 1e-30 106.8 0.0 1.3e-30 106.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) FYVE PF01363.16 gi|119719500|ref|YP_919995.1| - 0.11 12.3 0.2 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger PPDK_N PF01326.14 gi|119719501|ref|YP_919996.1| - 4.6e-109 364.4 0.2 7.3e-109 363.7 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|119719501|ref|YP_919996.1| - 4.8e-72 242.3 0.0 7e-72 241.7 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|119719501|ref|YP_919996.1| - 1.5e-24 85.3 0.8 4.5e-24 83.8 0.3 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|119719501|ref|YP_919996.1| - 0.0026 17.5 0.0 4.7 7.0 0.0 3.2 3 0 0 3 3 3 2 PEP-utilising enzyme, N-terminal Radical_SAM PF04055.16 gi|119719501|ref|YP_919996.1| - 0.09 12.9 0.1 0.79 9.8 0.0 2.6 2 0 0 2 2 2 0 Radical SAM superfamily HycI PF01750.13 gi|119719502|ref|YP_919997.1| - 9.2e-06 25.2 0.1 1.8e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Hydrogenase maturation protease RHH_1 PF01402.16 gi|119719503|ref|YP_919998.1| - 0.0016 18.2 0.8 0.01 15.7 0.0 2.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NiFe_hyd_SSU_C PF14720.1 gi|119719504|ref|YP_919999.1| - 2.5e-25 88.3 1.7 4e-25 87.6 1.1 1.3 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.17 gi|119719504|ref|YP_919999.1| - 1.8e-14 53.4 0.0 5.5e-14 51.9 0.0 1.8 2 1 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.4 gi|119719504|ref|YP_919999.1| - 0.00087 19.1 0.4 0.00087 19.1 0.3 3.4 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.14 gi|119719505|ref|YP_920000.1| - 8.3e-53 179.8 0.2 4.2e-34 118.1 0.1 3.1 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Cytochrom_B_N PF00033.14 gi|119719506|ref|YP_920001.1| - 0.0059 15.9 4.1 0.0059 15.9 2.8 3.0 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Nitrate_red_gam PF02665.9 gi|119719506|ref|YP_920001.1| - 0.096 12.0 13.7 0.49 9.6 1.6 3.3 2 1 1 3 3 3 0 Nitrate reductase gamma subunit Ni_hydr_CYTB PF01292.15 gi|119719506|ref|YP_920001.1| - 5.3 6.4 15.4 0.33 10.3 2.3 3.0 2 1 1 3 3 3 0 Prokaryotic cytochrome b561 CCG PF02754.11 gi|119719507|ref|YP_920002.1| - 1.6e-08 34.4 2.6 0.0018 18.2 0.0 3.5 4 0 0 4 4 3 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|119719507|ref|YP_920002.1| - 2e-08 34.4 4.1 5e-07 29.9 2.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719507|ref|YP_920002.1| - 5.6e-08 32.6 3.3 5.6e-08 32.6 2.3 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119719507|ref|YP_920002.1| - 4.1e-05 23.9 3.2 0.17 12.3 0.0 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119719507|ref|YP_920002.1| - 9.6e-05 22.1 10.2 0.044 13.6 0.6 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119719507|ref|YP_920002.1| - 0.00017 21.9 8.9 0.00028 21.2 4.4 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719507|ref|YP_920002.1| - 0.00024 20.8 12.9 0.078 12.9 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119719507|ref|YP_920002.1| - 0.00048 20.3 11.4 0.0013 19.0 4.9 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119719507|ref|YP_920002.1| - 0.00065 19.1 18.5 0.0054 16.2 2.0 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119719507|ref|YP_920002.1| - 0.00071 19.3 12.3 0.013 15.3 7.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119719507|ref|YP_920002.1| - 0.0017 19.0 5.0 0.0073 17.0 3.5 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|119719507|ref|YP_920002.1| - 0.003 17.3 17.5 0.042 13.7 0.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|119719507|ref|YP_920002.1| - 0.0043 17.2 16.7 0.0097 16.1 0.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain DUF4033 PF13225.1 gi|119719507|ref|YP_920002.1| - 0.25 10.9 2.0 0.34 10.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4033) Fer4_13 PF13370.1 gi|119719507|ref|YP_920002.1| - 1.3 9.4 11.9 2.3 8.6 0.9 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|119719507|ref|YP_920002.1| - 9.7 6.8 9.1 13 6.3 0.4 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain HypA PF01155.14 gi|119719508|ref|YP_920003.1| - 6.5e-34 116.0 0.0 7.7e-34 115.7 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|119719508|ref|YP_920003.1| - 0.0051 17.0 0.0 0.47 10.8 0.0 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|119719508|ref|YP_920003.1| - 0.0052 16.5 2.2 1.4 8.7 0.0 2.8 2 1 0 3 3 3 1 Transposase zinc-ribbon domain RNase_P_Rpp14 PF01900.14 gi|119719508|ref|YP_920003.1| - 0.0094 15.8 0.0 3.5 7.5 0.0 2.2 2 0 0 2 2 2 2 Rpp14/Pop5 family Elf1 PF05129.8 gi|119719508|ref|YP_920003.1| - 0.014 15.1 0.0 1 9.1 0.0 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|119719508|ref|YP_920003.1| - 0.016 14.4 0.8 0.87 8.9 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Mcm10 PF09332.6 gi|119719508|ref|YP_920003.1| - 0.02 14.2 0.1 0.59 9.4 0.0 2.0 2 0 0 2 2 2 0 Mcm10 replication factor TFIIS_C PF01096.13 gi|119719508|ref|YP_920003.1| - 0.021 14.4 0.6 7.4 6.3 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|119719508|ref|YP_920003.1| - 0.029 13.5 1.0 2.7 7.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|119719508|ref|YP_920003.1| - 0.032 13.8 3.0 2 8.0 0.0 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719508|ref|YP_920003.1| - 0.041 13.5 3.1 2.4 7.9 0.0 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|119719508|ref|YP_920003.1| - 0.046 13.6 1.3 8.9 6.3 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|119719508|ref|YP_920003.1| - 0.085 12.5 2.7 3.2 7.5 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|119719508|ref|YP_920003.1| - 0.095 12.4 0.7 2.7 7.7 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|119719508|ref|YP_920003.1| - 0.12 12.0 0.1 11 5.7 0.0 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|119719508|ref|YP_920003.1| - 0.12 12.6 1.2 0.52 10.7 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger double domain zf-ISL3 PF14690.1 gi|119719508|ref|YP_920003.1| - 0.13 12.3 0.3 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_4 PF13894.1 gi|119719508|ref|YP_920003.1| - 0.13 12.6 0.6 12 6.4 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin PF00301.15 gi|119719508|ref|YP_920003.1| - 0.13 12.1 0.3 9.7 6.1 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin zf-C2H2 PF00096.21 gi|119719508|ref|YP_920003.1| - 0.39 11.1 2.5 1.6 9.2 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DNA_RNApol_7kD PF03604.8 gi|119719508|ref|YP_920003.1| - 0.4 10.1 2.4 8.9 5.8 0.4 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|119719508|ref|YP_920003.1| - 0.73 9.4 2.8 9.4 5.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CbiA PF01656.18 gi|119719509|ref|YP_920004.1| - 7.4e-19 67.9 0.0 8.6e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|119719509|ref|YP_920004.1| - 1.4e-12 47.3 0.0 2.3e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|119719509|ref|YP_920004.1| - 3.1e-10 39.5 1.8 5.4e-08 32.2 0.4 2.3 2 0 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.6 gi|119719509|ref|YP_920004.1| - 2.9e-09 36.3 0.0 7.6e-09 35.0 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|119719509|ref|YP_920004.1| - 1.7e-07 31.3 0.1 3.1e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|119719509|ref|YP_920004.1| - 1.6e-06 27.5 0.0 0.042 13.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|119719509|ref|YP_920004.1| - 6.1e-05 22.7 0.1 0.15 11.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain ArgK PF03308.11 gi|119719509|ref|YP_920004.1| - 0.061 12.0 0.2 0.11 11.2 0.1 1.3 1 0 0 1 1 1 0 ArgK protein CTP_synth_N PF06418.9 gi|119719509|ref|YP_920004.1| - 0.063 12.3 0.2 0.089 11.8 0.1 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus MobB PF03205.9 gi|119719509|ref|YP_920004.1| - 0.071 12.8 0.1 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|119719509|ref|YP_920004.1| - 0.096 12.2 0.2 0.22 11.0 0.1 1.5 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|119719509|ref|YP_920004.1| - 0.13 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein YhjQ PF06564.7 gi|119719509|ref|YP_920004.1| - 0.14 11.5 0.6 0.53 9.5 0.1 1.9 2 0 0 2 2 2 0 YhjQ protein APS_kinase PF01583.15 gi|119719509|ref|YP_920004.1| - 0.15 11.7 0.1 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Radical_SAM PF04055.16 gi|119719510|ref|YP_920005.1| - 3.9e-29 101.9 0.0 3e-28 99.0 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|119719510|ref|YP_920005.1| - 4.6e-22 78.0 0.0 6.3e-22 77.6 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|119719510|ref|YP_920005.1| - 2.2e-06 27.7 0.0 4.7e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|119719510|ref|YP_920005.1| - 0.00078 19.5 0.0 0.002 18.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain ABC_tran PF00005.22 gi|119719511|ref|YP_920006.1| - 1.9e-33 115.6 0.0 2.4e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119719511|ref|YP_920006.1| - 5.4e-14 52.8 0.5 7.5e-12 45.8 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|119719511|ref|YP_920006.1| - 6e-06 26.7 0.0 6.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119719511|ref|YP_920006.1| - 2.6e-05 23.6 0.1 4.9e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119719511|ref|YP_920006.1| - 2.6e-05 23.5 0.0 0.00048 19.4 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|119719511|ref|YP_920006.1| - 0.0011 18.3 0.0 0.035 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|119719511|ref|YP_920006.1| - 0.002 17.0 0.2 0.0032 16.4 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|119719511|ref|YP_920006.1| - 0.0024 17.5 0.4 0.0051 16.5 0.0 1.7 2 0 0 2 2 1 1 Part of AAA domain AAA_16 PF13191.1 gi|119719511|ref|YP_920006.1| - 0.0029 17.6 0.4 0.0067 16.4 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|119719511|ref|YP_920006.1| - 0.0033 16.5 0.0 0.0049 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|119719511|ref|YP_920006.1| - 0.0044 16.2 0.1 0.0066 15.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|119719511|ref|YP_920006.1| - 0.011 15.5 0.0 0.087 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|119719511|ref|YP_920006.1| - 0.014 15.4 0.9 0.14 12.2 0.1 2.2 2 1 0 2 2 2 0 AAA domain BCA_ABC_TP_C PF12399.3 gi|119719511|ref|YP_920006.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_10 PF12846.2 gi|119719511|ref|YP_920006.1| - 0.019 14.4 0.6 0.099 12.0 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|119719511|ref|YP_920006.1| - 0.03 13.7 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|119719511|ref|YP_920006.1| - 0.036 13.7 0.0 0.093 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|119719511|ref|YP_920006.1| - 0.037 13.7 0.0 0.056 13.1 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|119719511|ref|YP_920006.1| - 0.043 13.4 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|119719511|ref|YP_920006.1| - 0.049 13.2 0.1 0.12 12.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|119719511|ref|YP_920006.1| - 0.052 12.9 0.2 0.093 12.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|119719511|ref|YP_920006.1| - 0.065 13.1 0.0 0.4 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|119719511|ref|YP_920006.1| - 0.098 12.1 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|119719511|ref|YP_920006.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|119719511|ref|YP_920006.1| - 0.1 11.0 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|119719511|ref|YP_920006.1| - 0.14 10.6 0.9 1.2 7.6 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|119719511|ref|YP_920006.1| - 0.16 11.0 0.0 0.37 9.9 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|119719511|ref|YP_920006.1| - 0.18 12.5 0.3 0.48 11.2 0.1 1.7 2 1 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|119719512|ref|YP_920007.1| - 6.9e-31 107.3 0.0 9e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119719512|ref|YP_920007.1| - 1e-15 58.4 0.4 7.5e-07 29.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119719512|ref|YP_920007.1| - 1.4e-10 40.8 0.5 9.2e-05 21.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|119719512|ref|YP_920007.1| - 6.5e-05 22.4 0.2 0.00034 20.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|119719512|ref|YP_920007.1| - 7.5e-05 22.3 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|119719512|ref|YP_920007.1| - 8e-05 22.0 0.1 0.00022 20.6 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|119719512|ref|YP_920007.1| - 0.00035 20.7 0.1 0.0049 17.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|119719512|ref|YP_920007.1| - 0.00062 20.1 0.0 0.00093 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119719512|ref|YP_920007.1| - 0.001 19.0 0.2 0.0035 17.3 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|119719512|ref|YP_920007.1| - 0.0075 16.1 0.1 0.018 14.8 0.0 1.7 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|119719512|ref|YP_920007.1| - 0.012 15.5 0.0 0.061 13.2 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|119719512|ref|YP_920007.1| - 0.014 15.0 0.0 0.042 13.5 0.0 1.8 2 0 0 2 2 2 0 NACHT domain DUF258 PF03193.11 gi|119719512|ref|YP_920007.1| - 0.014 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|119719512|ref|YP_920007.1| - 0.018 15.8 0.7 0.038 14.7 0.4 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119719512|ref|YP_920007.1| - 0.027 14.1 0.1 0.048 13.3 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|119719512|ref|YP_920007.1| - 0.045 13.3 0.0 0.092 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|119719512|ref|YP_920007.1| - 0.06 12.3 0.0 1.7 7.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Polysacc_deac_2 PF04748.8 gi|119719512|ref|YP_920007.1| - 0.061 12.3 0.0 0.092 11.7 0.0 1.2 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase MutS_V PF00488.16 gi|119719512|ref|YP_920007.1| - 0.08 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 MutS domain V ABC_ATPase PF09818.4 gi|119719512|ref|YP_920007.1| - 0.096 11.2 0.5 1.6 7.2 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|119719512|ref|YP_920007.1| - 0.096 12.3 0.1 0.55 9.8 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase Miro PF08477.8 gi|119719512|ref|YP_920007.1| - 0.1 13.1 0.0 0.27 11.7 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|119719512|ref|YP_920007.1| - 0.1 12.0 0.1 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|119719512|ref|YP_920007.1| - 0.14 12.0 0.0 0.49 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|119719512|ref|YP_920007.1| - 0.16 11.7 0.4 1.4 8.7 0.0 2.4 2 1 0 2 2 2 0 Part of AAA domain BPD_transp_2 PF02653.11 gi|119719513|ref|YP_920008.1| - 8.6e-41 139.6 35.2 1e-40 139.4 24.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component QCR10 PF09796.4 gi|119719513|ref|YP_920008.1| - 8.3 6.1 6.4 19 4.9 0.3 2.5 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) BPD_transp_2 PF02653.11 gi|119719514|ref|YP_920009.1| - 3.2e-44 150.9 25.1 5.1e-44 150.2 17.4 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component ATP-grasp_5 PF13549.1 gi|119719515|ref|YP_920010.1| - 1.8e-77 259.4 0.0 3.7e-77 258.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|119719515|ref|YP_920010.1| - 1.8e-51 173.3 0.3 4.1e-50 168.9 0.0 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|119719515|ref|YP_920010.1| - 1.8e-27 95.8 0.5 2.4e-26 92.1 0.2 2.7 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|119719515|ref|YP_920010.1| - 1.1e-17 64.2 0.2 7.5e-17 61.6 0.1 2.5 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|119719515|ref|YP_920010.1| - 0.00029 20.4 0.0 0.00082 18.9 0.0 1.8 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|119719515|ref|YP_920010.1| - 0.0038 16.5 0.1 0.011 15.0 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_2 PF08442.5 gi|119719515|ref|YP_920010.1| - 0.0086 15.4 0.1 0.025 13.9 0.1 1.8 1 1 0 1 1 1 1 ATP-grasp domain UPF0047 PF01894.12 gi|119719516|ref|YP_920011.1| - 3.5e-39 133.2 0.0 4.1e-39 133.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Ribonuc_red_lgC PF02867.10 gi|119719516|ref|YP_920011.1| - 0.14 10.6 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 Ribonucleotide reductase, barrel domain DUF1743 PF08489.6 gi|119719517|ref|YP_920012.1| - 1.9e-31 108.2 0.0 5.8e-31 106.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|119719517|ref|YP_920012.1| - 1e-05 25.2 0.2 2e-05 24.3 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|119719517|ref|YP_920012.1| - 0.00097 18.7 2.0 0.0018 17.8 1.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|119719517|ref|YP_920012.1| - 0.0026 17.2 2.7 0.0047 16.4 1.9 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|119719517|ref|YP_920012.1| - 0.0076 16.0 1.0 0.014 15.2 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|119719517|ref|YP_920012.1| - 0.038 13.6 1.6 0.07 12.8 1.1 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit IBR PF01485.16 gi|119719517|ref|YP_920012.1| - 0.06 13.2 0.2 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 IBR domain Ribosomal_S27 PF01599.14 gi|119719517|ref|YP_920012.1| - 0.064 13.0 1.0 0.14 11.9 0.7 1.5 1 0 0 1 1 1 0 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|119719517|ref|YP_920012.1| - 0.067 13.0 4.9 0.41 10.4 3.4 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|119719517|ref|YP_920012.1| - 0.079 12.9 1.2 9.4 6.2 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Rsm22 PF09243.5 gi|119719517|ref|YP_920012.1| - 0.14 11.1 0.0 0.31 10.0 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial small ribosomal subunit Rsm22 DUF1610 PF07754.6 gi|119719517|ref|YP_920012.1| - 0.2 11.7 12.1 1.5 8.9 8.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|119719517|ref|YP_920012.1| - 0.26 10.5 4.3 3.3 7.0 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119719517|ref|YP_920012.1| - 0.27 10.7 4.3 6 6.5 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|119719517|ref|YP_920012.1| - 0.34 10.5 2.0 11 5.8 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|119719517|ref|YP_920012.1| - 2.1 8.4 7.1 4.6 7.3 0.6 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.1 gi|119719517|ref|YP_920012.1| - 2.1 8.6 5.5 4.6 7.5 3.8 1.6 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-TFIIB PF13453.1 gi|119719517|ref|YP_920012.1| - 2.7 7.2 4.4 15 4.9 3.2 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-HIT PF04438.11 gi|119719517|ref|YP_920012.1| - 6 6.6 7.5 2.5 7.8 1.2 2.3 2 0 0 2 2 2 0 HIT zinc finger polyprenyl_synt PF00348.12 gi|119719519|ref|YP_920014.1| - 3.1e-56 190.1 0.0 4e-56 189.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase AA_kinase PF00696.23 gi|119719520|ref|YP_920015.1| - 4.1e-48 164.0 0.1 4.6e-48 163.8 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_L6 PF00347.18 gi|119719521|ref|YP_920016.1| - 4.2e-25 88.0 7.2 1.8e-15 57.2 2.3 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribonuc_L-PSP PF01042.16 gi|119719522|ref|YP_920017.1| - 8.6e-42 141.7 0.0 9.5e-42 141.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP PALP PF00291.20 gi|119719523|ref|YP_920018.1| - 1.7e-86 290.1 0.7 2.1e-86 289.9 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|119719523|ref|YP_920018.1| - 0.00019 21.6 0.0 0.00048 20.4 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|119719523|ref|YP_920018.1| - 0.00089 18.6 0.0 0.0034 16.8 0.0 2.0 1 0 0 1 1 1 1 ACT domain DegT_DnrJ_EryC1 PF01041.12 gi|119719523|ref|YP_920018.1| - 0.0033 16.5 0.0 0.0054 15.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_22 PF13309.1 gi|119719523|ref|YP_920018.1| - 0.089 12.5 0.0 0.34 10.7 0.0 1.9 2 0 0 2 2 2 0 HTH domain CheZ PF04344.8 gi|119719523|ref|YP_920018.1| - 0.15 11.7 0.1 0.55 9.8 0.0 2.0 3 0 0 3 3 3 0 Chemotaxis phosphatase, CheZ PfkB PF00294.19 gi|119719524|ref|YP_920019.1| - 8.3e-27 94.0 0.0 1.1e-26 93.7 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase GTP_EFTU PF00009.22 gi|119719525|ref|YP_920020.1| - 1.7e-55 187.4 0.0 2.6e-55 186.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|119719525|ref|YP_920020.1| - 3e-32 110.7 0.3 2.2e-31 107.8 0.0 2.7 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|119719525|ref|YP_920020.1| - 1.4e-23 82.5 0.0 3e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|119719525|ref|YP_920020.1| - 2e-23 82.0 0.1 5.6e-23 80.6 0.0 1.8 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|119719525|ref|YP_920020.1| - 1e-12 47.9 0.3 2.5e-12 46.7 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|119719525|ref|YP_920020.1| - 0.0081 16.1 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase DUF4424 PF14415.1 gi|119719526|ref|YP_920021.1| - 0.0071 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4424) Perilipin PF03036.11 gi|119719526|ref|YP_920021.1| - 0.027 13.2 2.6 0.057 12.2 1.8 1.5 1 0 0 1 1 1 0 Perilipin family Rootletin PF15035.1 gi|119719526|ref|YP_920021.1| - 0.27 11.1 8.8 0.56 10.1 6.1 1.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF4381 PF14316.1 gi|119719526|ref|YP_920021.1| - 0.29 11.2 1.7 0.59 10.2 0.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4381) IncA PF04156.9 gi|119719526|ref|YP_920021.1| - 0.42 10.1 23.8 0.042 13.4 8.9 2.5 2 1 0 2 2 2 0 IncA protein DUF1049 PF06305.6 gi|119719526|ref|YP_920021.1| - 0.59 9.6 3.6 0.27 10.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) tRNA-synt_1g PF09334.6 gi|119719527|ref|YP_920022.1| - 5.2e-148 492.8 0.0 6.4e-148 492.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|119719527|ref|YP_920022.1| - 6.4e-12 44.2 0.0 4.9e-08 31.4 0.0 3.1 2 2 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|119719527|ref|YP_920022.1| - 1.1e-11 44.7 0.2 2.1e-11 43.7 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|119719527|ref|YP_920022.1| - 0.00013 21.1 0.0 0.0025 16.9 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain zf-ribbon_3 PF13248.1 gi|119719527|ref|YP_920022.1| - 0.011 14.9 3.1 0.85 8.9 0.0 2.5 1 1 1 2 2 2 0 zinc-ribbon domain tRNA-synt_1f PF01921.13 gi|119719527|ref|YP_920022.1| - 0.083 11.5 0.0 2.2 6.8 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) zinc_ribbon_2 PF13240.1 gi|119719527|ref|YP_920022.1| - 0.1 12.0 4.4 5.5 6.6 0.1 2.8 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|119719527|ref|YP_920022.1| - 0.48 9.7 4.6 0.85 8.9 1.3 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|119719527|ref|YP_920022.1| - 0.6 9.9 3.7 1.5 8.7 2.2 1.7 1 1 1 2 2 2 0 Double zinc ribbon Radical_SAM PF04055.16 gi|119719528|ref|YP_920023.1| - 1.5e-27 96.8 0.1 1.9e-26 93.2 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|119719528|ref|YP_920023.1| - 1e-23 82.9 0.0 1.7e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|119719528|ref|YP_920023.1| - 1.2e-13 50.5 3.0 2.5e-13 49.5 2.1 1.6 1 0 0 1 1 1 1 TRAM domain AdoHcyase PF05221.12 gi|119719529|ref|YP_920024.1| - 9.5e-72 241.1 0.0 1.1e-71 240.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|119719529|ref|YP_920024.1| - 6.4e-55 185.4 0.1 1.2e-54 184.5 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|119719529|ref|YP_920024.1| - 1.4e-09 37.3 0.1 2.5e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|119719529|ref|YP_920024.1| - 1.5e-06 27.6 0.0 3.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|119719529|ref|YP_920024.1| - 0.0032 17.4 0.1 0.0074 16.2 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|119719529|ref|YP_920024.1| - 0.016 14.8 0.1 0.039 13.5 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.14 gi|119719529|ref|YP_920024.1| - 0.016 14.2 0.0 0.094 11.7 0.0 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.1 gi|119719529|ref|YP_920024.1| - 0.038 14.2 0.1 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding PNP_UDP_1 PF01048.15 gi|119719530|ref|YP_920025.1| - 3.4e-54 183.3 0.0 3.8e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NAD_binding_10 PF13460.1 gi|119719530|ref|YP_920025.1| - 0.15 12.0 0.0 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 NADH(P)-binding tRNA_int_endo PF01974.12 gi|119719531|ref|YP_920026.1| - 6e-27 93.2 0.3 9.4e-27 92.6 0.2 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|119719531|ref|YP_920026.1| - 5.8e-14 51.3 0.1 8.6e-14 50.8 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Pribosyltran PF00156.22 gi|119719532|ref|YP_920027.1| - 1.2e-17 63.7 0.0 1.9e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|119719532|ref|YP_920027.1| - 0.0036 16.5 0.0 0.0048 16.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HemN_C PF06969.11 gi|119719532|ref|YP_920027.1| - 0.082 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain Lactamase_B_2 PF12706.2 gi|119719533|ref|YP_920028.1| - 2.2e-15 56.7 0.0 8.3e-14 51.5 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|119719533|ref|YP_920028.1| - 4.7e-11 42.6 0.0 7.8e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|119719533|ref|YP_920028.1| - 2.1e-10 40.5 0.0 5.2e-10 39.2 0.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DNA_primase_S PF01896.14 gi|119719534|ref|YP_920029.1| - 1.1e-22 80.4 0.2 5.3e-22 78.1 0.0 2.0 2 1 1 3 3 3 1 Eukaryotic and archaeal DNA primase small subunit RE_MamI PF09567.5 gi|119719534|ref|YP_920029.1| - 0.03 13.4 0.1 0.049 12.6 0.1 1.3 1 0 0 1 1 1 0 MamI restriction endonuclease Pepsin-I3 PF06394.8 gi|119719534|ref|YP_920029.1| - 0.05 13.2 0.8 6.6 6.4 0.1 2.9 3 0 0 3 3 3 0 Pepsin inhibitor-3-like repeated domain zf-ribbon_3 PF13248.1 gi|119719534|ref|YP_920029.1| - 0.15 11.2 1.1 1.3 8.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|119719534|ref|YP_920029.1| - 0.2 11.5 9.6 0.48 10.3 1.2 3.2 3 0 0 3 3 3 0 Rubredoxin DZR PF12773.2 gi|119719534|ref|YP_920029.1| - 0.87 9.4 6.0 1.4 8.7 4.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1 PF03811.8 gi|119719534|ref|YP_920029.1| - 1.9 8.0 8.2 1.8 8.1 2.0 2.5 2 0 0 2 2 2 0 InsA N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|119719534|ref|YP_920029.1| - 3.7 7.2 6.8 4.7 6.9 1.3 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DNA_primase_lrg PF04104.9 gi|119719535|ref|YP_920030.1| - 6.4e-34 117.4 0.1 3e-33 115.1 0.0 2.0 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.13 gi|119719536|ref|YP_920031.1| - 6.9e-15 54.6 0.1 8.5e-14 51.1 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|119719536|ref|YP_920031.1| - 2.1e-09 37.3 0.0 3.9e-08 33.2 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|119719536|ref|YP_920031.1| - 4e-08 32.3 0.0 0.0013 17.5 0.0 2.0 2 0 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|119719536|ref|YP_920031.1| - 0.00025 20.2 0.0 0.00037 19.7 0.0 1.4 1 1 0 1 1 1 1 Rad9 TFIIS_C PF01096.13 gi|119719537|ref|YP_920032.1| - 2.9e-17 62.0 10.7 3.1e-17 61.9 1.5 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|119719537|ref|YP_920032.1| - 8.8e-09 34.9 5.1 1.8e-08 33.9 0.2 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|119719537|ref|YP_920032.1| - 2.3e-07 30.4 5.9 0.0049 16.6 0.2 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|119719537|ref|YP_920032.1| - 0.00013 21.0 3.7 0.0012 17.9 0.4 2.9 3 0 0 3 3 3 1 Transcription factor zinc-finger FdhE PF04216.7 gi|119719537|ref|YP_920032.1| - 0.00019 21.2 8.1 0.068 12.8 1.4 2.0 2 0 0 2 2 2 2 Protein involved in formate dehydrogenase formation Nudix_N_2 PF14803.1 gi|119719537|ref|YP_920032.1| - 0.00019 21.0 8.6 0.0054 16.3 0.7 3.1 2 2 0 2 2 2 1 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|119719537|ref|YP_920032.1| - 0.00038 19.5 9.1 0.53 9.5 0.2 4.0 4 0 0 4 4 4 1 zinc-ribbon domain Baculo_LEF5_C PF11792.3 gi|119719537|ref|YP_920032.1| - 0.00038 19.7 0.7 0.00038 19.7 0.5 3.1 3 1 1 4 4 4 1 Baculoviridae late expression factor 5 C-terminal domain DZR PF12773.2 gi|119719537|ref|YP_920032.1| - 0.001 18.8 6.8 0.037 13.8 0.3 2.5 2 2 0 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|119719537|ref|YP_920032.1| - 0.0012 18.0 13.7 0.38 10.0 1.8 3.5 2 2 0 2 2 2 2 TFIIB zinc-binding IBR PF01485.16 gi|119719537|ref|YP_920032.1| - 0.0016 18.2 2.2 0.099 12.5 0.4 2.9 2 1 0 2 2 2 1 IBR domain C1_1 PF00130.17 gi|119719537|ref|YP_920032.1| - 0.0017 18.0 3.2 0.028 14.1 0.2 2.8 3 0 0 3 3 3 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|119719537|ref|YP_920032.1| - 0.0018 17.7 12.8 1.2 8.7 4.0 4.0 3 1 0 3 3 3 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|119719537|ref|YP_920032.1| - 0.0059 16.3 5.6 0.094 12.5 0.2 3.2 2 1 0 2 2 2 1 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|119719537|ref|YP_920032.1| - 0.013 15.4 11.1 3.9 7.4 0.0 4.2 4 0 0 4 4 4 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|119719537|ref|YP_920032.1| - 0.016 15.2 11.2 0.28 11.2 0.4 3.8 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|119719537|ref|YP_920032.1| - 0.02 14.5 9.0 0.24 11.0 0.5 2.8 2 2 1 3 3 3 0 Putative transposase DNA-binding domain zf-MYND PF01753.13 gi|119719537|ref|YP_920032.1| - 0.045 13.6 6.7 1.9 8.3 0.3 2.3 2 0 0 2 2 2 0 MYND finger zf-NADH-PPase PF09297.6 gi|119719537|ref|YP_920032.1| - 0.054 13.0 10.0 0.38 10.2 0.1 3.8 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|119719537|ref|YP_920032.1| - 0.12 12.0 12.2 2.7 7.6 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain DUF2387 PF09526.5 gi|119719537|ref|YP_920032.1| - 0.12 12.2 0.1 0.12 12.2 0.1 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_4 PF13717.1 gi|119719537|ref|YP_920032.1| - 0.14 11.8 12.6 2.8 7.6 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|119719537|ref|YP_920032.1| - 0.17 11.2 0.4 0.17 11.2 0.3 3.1 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain Elf1 PF05129.8 gi|119719537|ref|YP_920032.1| - 0.19 11.4 5.6 0.24 11.1 0.2 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like RecR PF02132.10 gi|119719537|ref|YP_920032.1| - 0.23 10.9 9.0 1.8 8.0 0.0 3.8 4 0 0 4 4 4 0 RecR protein zf-RING_6 PF14835.1 gi|119719537|ref|YP_920032.1| - 0.31 10.8 2.7 0.66 9.7 0.0 2.5 3 0 0 3 3 2 0 zf-RING of BARD1-type protein Mut7-C PF01927.11 gi|119719537|ref|YP_920032.1| - 0.34 10.8 4.5 0.63 10.0 2.2 2.1 1 1 0 1 1 1 0 Mut7-C RNAse domain UPF0547 PF10571.4 gi|119719537|ref|YP_920032.1| - 0.53 10.0 12.8 6.1 6.6 0.1 3.7 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|119719537|ref|YP_920032.1| - 0.58 9.6 13.0 7 6.2 2.0 3.8 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_ribbon_recom PF13408.1 gi|119719537|ref|YP_920032.1| - 0.6 10.4 16.0 6.9 7.0 2.0 3.0 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-FPG_IleRS PF06827.9 gi|119719537|ref|YP_920032.1| - 0.77 9.4 9.4 21 4.8 0.0 4.0 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS DUF3797 PF12677.2 gi|119719537|ref|YP_920032.1| - 1 9.0 0.1 1 9.0 0.1 3.2 3 1 0 3 3 2 0 Domain of unknown function (DUF3797) zf-H2C2_2 PF13465.1 gi|119719537|ref|YP_920032.1| - 1.2 9.6 10.3 31 5.0 0.3 4.1 4 0 0 4 4 4 0 Zinc-finger double domain DUF3039 PF11238.3 gi|119719537|ref|YP_920032.1| - 1.3 8.4 0.1 1.3 8.4 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3039) Rpr2 PF04032.11 gi|119719537|ref|YP_920032.1| - 1.6 8.6 8.6 85 3.1 4.3 3.3 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain HypA PF01155.14 gi|119719537|ref|YP_920032.1| - 1.6 8.4 7.1 9.1 6.0 2.6 2.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2296 PF10058.4 gi|119719537|ref|YP_920032.1| - 3.4 7.4 8.5 16 5.3 0.0 3.7 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2_4 PF13894.1 gi|119719537|ref|YP_920032.1| - 3.7 8.0 9.3 13 6.4 0.2 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger PHD PF00628.24 gi|119719537|ref|YP_920032.1| - 4.5 7.0 8.7 22 4.8 0.2 3.0 2 1 1 3 3 3 0 PHD-finger C1_3 PF07649.7 gi|119719537|ref|YP_920032.1| - 5.2 7.1 6.8 17 5.5 0.0 3.3 4 0 0 4 4 3 0 C1-like domain A2L_zn_ribbon PF08792.5 gi|119719537|ref|YP_920032.1| - 6.4 6.3 13.7 8.2 6.0 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain RNHCP PF12647.2 gi|119719537|ref|YP_920032.1| - 8.6 6.2 9.2 4.5 7.1 0.0 3.3 2 2 1 3 3 3 0 RNHCP domain Cytidylate_kin2 PF13189.1 gi|119719538|ref|YP_920033.1| - 4.2e-24 85.4 2.5 2.6e-22 79.5 1.7 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|119719538|ref|YP_920033.1| - 3.4e-19 69.4 0.4 4.8e-19 68.9 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|119719538|ref|YP_920033.1| - 3.7e-17 63.2 1.3 6e-17 62.5 0.9 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|119719538|ref|YP_920033.1| - 4.5e-07 29.8 0.0 1.1e-06 28.6 0.0 1.7 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.1 gi|119719538|ref|YP_920033.1| - 9.6e-07 28.7 0.3 4.5e-05 23.3 0.2 2.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|119719538|ref|YP_920033.1| - 2.8e-06 27.2 1.1 6e-06 26.2 0.8 1.5 1 1 0 1 1 1 1 Shikimate kinase Cytidylate_kin PF02224.13 gi|119719538|ref|YP_920033.1| - 3.8e-05 23.1 1.3 4.8e-05 22.8 0.9 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_19 PF13245.1 gi|119719538|ref|YP_920033.1| - 0.00014 21.4 0.0 0.00039 20.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|119719538|ref|YP_920033.1| - 0.00031 20.7 0.1 0.00068 19.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|119719538|ref|YP_920033.1| - 0.00045 20.4 0.0 0.00078 19.6 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|119719538|ref|YP_920033.1| - 0.00063 19.8 0.0 0.0014 18.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|119719538|ref|YP_920033.1| - 0.0027 17.1 1.2 1.6 8.0 0.0 3.3 1 1 3 4 4 4 1 Thymidylate kinase T2SE PF00437.15 gi|119719538|ref|YP_920033.1| - 0.0045 15.9 0.2 1 8.2 0.0 2.1 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_16 PF13191.1 gi|119719538|ref|YP_920033.1| - 0.0071 16.3 0.2 0.015 15.3 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain CoaE PF01121.15 gi|119719538|ref|YP_920033.1| - 0.015 14.6 0.4 0.97 8.8 0.0 2.3 1 1 0 2 2 2 0 Dephospho-CoA kinase UPF0079 PF02367.12 gi|119719538|ref|YP_920033.1| - 0.016 14.8 0.0 0.042 13.4 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PRK PF00485.13 gi|119719538|ref|YP_920033.1| - 0.017 14.6 0.7 0.34 10.4 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_10 PF12846.2 gi|119719538|ref|YP_920033.1| - 0.027 13.9 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|119719538|ref|YP_920033.1| - 0.031 13.9 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|119719538|ref|YP_920033.1| - 0.033 13.7 0.2 0.47 9.9 0.0 2.1 1 1 1 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|119719538|ref|YP_920033.1| - 0.044 13.4 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 NTPase Zeta_toxin PF06414.7 gi|119719538|ref|YP_920033.1| - 0.047 12.7 0.2 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.1 gi|119719538|ref|YP_920033.1| - 0.052 13.4 0.0 0.44 10.4 0.0 2.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|119719538|ref|YP_920033.1| - 0.1 12.8 0.0 0.14 12.4 0.0 1.5 1 1 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|119719538|ref|YP_920033.1| - 0.12 11.9 0.0 0.3 10.5 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Viral_helicase1 PF01443.13 gi|119719538|ref|YP_920033.1| - 0.14 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Ribosomal_L34e PF01199.13 gi|119719539|ref|YP_920034.1| - 7.2e-27 93.4 1.5 8e-27 93.2 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.1 gi|119719539|ref|YP_920034.1| - 0.0064 16.2 1.2 0.54 10.0 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) Gin PF10764.4 gi|119719539|ref|YP_920034.1| - 0.046 13.4 0.2 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin zf-FCS PF06467.9 gi|119719539|ref|YP_920034.1| - 0.082 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-RING_2 PF13639.1 gi|119719539|ref|YP_920034.1| - 0.093 12.5 0.1 0.2 11.4 0.1 1.6 1 1 0 1 1 1 0 Ring finger domain Sgf11 PF08209.6 gi|119719539|ref|YP_920034.1| - 0.28 10.5 0.1 0.28 10.5 0.1 2.2 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) tRNA-synt_2 PF00152.15 gi|119719540|ref|YP_920035.1| - 4.6e-87 291.9 0.0 5.6e-87 291.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|119719540|ref|YP_920035.1| - 0.00073 18.8 0.2 0.018 14.2 0.0 2.8 4 0 0 4 4 4 1 tRNA synthetases class II core domain (F) SWIM PF04434.12 gi|119719541|ref|YP_920036.1| - 5.9e-06 25.6 0.2 9.4e-06 24.9 0.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger tRNA_anti-codon PF01336.20 gi|119719542|ref|YP_920037.1| - 1.2e-06 28.2 0.3 0.00018 21.3 0.1 2.7 3 0 0 3 3 3 2 OB-fold nucleic acid binding domain DUF2240 PF09999.4 gi|119719542|ref|YP_920037.1| - 0.019 14.4 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) Elf1 PF05129.8 gi|298205345|ref|YP_003717797.1| - 3.1e-18 65.2 0.2 3.6e-18 65.0 0.2 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|298205345|ref|YP_003717797.1| - 3e-05 24.2 0.3 4.4e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|298205345|ref|YP_003717797.1| - 0.00027 20.9 3.7 0.028 14.5 0.2 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|298205345|ref|YP_003717797.1| - 0.0016 17.5 0.9 0.42 9.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|298205345|ref|YP_003717797.1| - 0.0037 16.9 1.1 0.0072 15.9 0.7 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zf-CSL PF05207.8 gi|298205345|ref|YP_003717797.1| - 0.0089 15.5 0.6 0.019 14.4 0.4 1.6 1 1 0 1 1 1 1 CSL zinc finger zinc_ribbon_2 PF13240.1 gi|298205345|ref|YP_003717797.1| - 0.049 13.1 3.4 0.56 9.7 2.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF4109 PF13397.1 gi|298205345|ref|YP_003717797.1| - 0.057 13.8 0.0 0.34 11.3 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4109) Rubredoxin PF00301.15 gi|298205345|ref|YP_003717797.1| - 0.064 13.1 0.7 0.29 11.0 0.0 2.0 2 0 0 2 2 2 0 Rubredoxin CpXC PF14353.1 gi|298205345|ref|YP_003717797.1| - 0.074 13.0 0.2 8.2 6.4 0.1 2.3 2 1 1 3 3 3 0 CpXC protein DZR PF12773.2 gi|298205345|ref|YP_003717797.1| - 0.092 12.5 0.6 0.18 11.6 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|298205345|ref|YP_003717797.1| - 0.092 12.4 0.5 0.1 12.3 0.4 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-HYPF PF07503.7 gi|298205345|ref|YP_003717797.1| - 0.12 11.8 1.2 1.5 8.3 0.0 2.3 2 0 0 2 2 2 0 HypF finger Ribosomal_L32p PF01783.18 gi|298205345|ref|YP_003717797.1| - 0.14 12.3 5.8 3.8 7.7 4.0 2.1 1 1 0 1 1 1 0 Ribosomal L32p protein family Zn_Tnp_IS1595 PF12760.2 gi|298205345|ref|YP_003717797.1| - 0.2 11.5 2.8 6.1 6.7 2.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|298205345|ref|YP_003717797.1| - 0.2 10.8 0.7 0.42 9.8 0.5 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger Ogr_Delta PF04606.7 gi|298205345|ref|YP_003717797.1| - 0.2 11.3 2.5 7.6 6.2 2.3 2.2 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|298205345|ref|YP_003717797.1| - 0.21 11.6 3.4 2.4 8.2 0.3 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2082 PF09855.4 gi|298205345|ref|YP_003717797.1| - 0.49 10.2 3.1 14 5.5 2.1 2.2 1 1 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Sgf11 PF08209.6 gi|298205345|ref|YP_003717797.1| - 0.59 9.4 3.1 5.5 6.4 0.3 2.4 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TF_Zn_Ribbon PF08271.7 gi|298205345|ref|YP_003717797.1| - 0.79 9.0 4.9 8.1 5.8 2.5 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|298205345|ref|YP_003717797.1| - 0.89 9.3 4.7 8.8 6.1 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|298205345|ref|YP_003717797.1| - 1 9.0 4.8 7.8 6.1 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|298205345|ref|YP_003717797.1| - 1.4 8.8 4.1 16 5.3 0.4 2.7 2 1 1 3 3 3 0 Putative zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|298205345|ref|YP_003717797.1| - 1.8 8.8 6.6 0.25 11.6 1.4 1.9 2 1 0 2 2 1 0 Recombinase zinc beta ribbon domain PcrB PF01884.12 gi|119719544|ref|YP_920039.1| - 7.1e-73 244.6 0.3 8.3e-73 244.4 0.2 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|119719544|ref|YP_920039.1| - 4.5e-09 35.9 0.1 5e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|119719544|ref|YP_920039.1| - 2.3e-06 26.9 1.2 0.0079 15.2 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|119719544|ref|YP_920039.1| - 0.0001 21.3 2.3 0.018 14.0 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|119719544|ref|YP_920039.1| - 0.0001 20.9 0.4 0.0006 18.4 0.1 2.0 2 0 0 2 2 2 1 Tryptophan synthase alpha chain BtpA PF03437.10 gi|119719544|ref|YP_920039.1| - 0.0056 15.9 0.2 0.16 11.2 0.0 2.1 2 0 0 2 2 2 1 BtpA family Ribul_P_3_epim PF00834.14 gi|119719544|ref|YP_920039.1| - 0.0061 15.6 0.1 0.024 13.7 0.0 1.9 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.16 gi|119719544|ref|YP_920039.1| - 0.0088 15.0 0.3 0.0088 15.0 0.2 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|119719544|ref|YP_920039.1| - 0.013 14.5 2.7 0.088 11.8 0.2 2.3 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Pyr_redox PF00070.22 gi|119719544|ref|YP_920039.1| - 0.02 15.2 0.4 0.065 13.6 0.3 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IMPDH PF00478.20 gi|119719544|ref|YP_920039.1| - 0.037 12.9 0.2 0.3 9.9 0.0 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DUF362 PF04015.7 gi|119719544|ref|YP_920039.1| - 0.061 12.7 0.5 0.19 11.2 0.1 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF362) MoCF_biosynth PF00994.19 gi|119719544|ref|YP_920039.1| - 0.066 12.6 0.9 5.6 6.3 0.1 2.6 2 1 0 2 2 2 0 Probable molybdopterin binding domain TMP-TENI PF02581.12 gi|119719544|ref|YP_920039.1| - 0.11 11.6 0.4 0.22 10.6 0.0 1.7 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI Sec61_beta PF03911.11 gi|119719545|ref|YP_920040.1| - 4.6e-10 39.1 0.2 5.9e-10 38.7 0.2 1.1 1 0 0 1 1 1 1 Sec61beta family UbiA PF01040.13 gi|119719547|ref|YP_920042.1| - 2.8e-35 121.7 19.0 3.8e-35 121.3 13.1 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family GvpK PF05121.7 gi|119719548|ref|YP_920043.1| - 0.15 11.9 0.1 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Gas vesicle protein K AAA_25 PF13481.1 gi|119719549|ref|YP_920044.1| - 2.4e-06 27.0 0.1 0.0012 18.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|119719549|ref|YP_920044.1| - 0.005 16.7 0.0 0.011 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zot PF05707.7 gi|119719549|ref|YP_920044.1| - 0.015 14.7 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|119719549|ref|YP_920044.1| - 0.079 13.0 0.0 0.17 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|119719549|ref|YP_920044.1| - 0.084 12.6 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) OST3_OST6 PF04756.8 gi|119719550|ref|YP_920045.1| - 6.4e-06 25.8 3.6 1e-05 25.1 2.5 1.3 1 1 0 1 1 1 1 OST3 / OST6 family MFS_Mycoplasma PF07672.8 gi|119719550|ref|YP_920045.1| - 0.0093 15.1 4.0 0.011 14.9 2.8 1.0 1 0 0 1 1 1 1 Mycoplasma MFS transporter DUF308 PF03729.8 gi|119719550|ref|YP_920045.1| - 0.14 12.1 10.4 0.26 11.3 2.2 2.1 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF2215 PF10225.4 gi|119719550|ref|YP_920045.1| - 0.18 11.2 6.4 0.04 13.3 2.0 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2215) DUF3084 PF11283.3 gi|119719550|ref|YP_920045.1| - 0.51 10.2 3.2 1.3 8.8 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3084) Tetraspannin PF00335.15 gi|119719550|ref|YP_920045.1| - 4.9 6.3 8.3 6.3 6.0 5.8 1.1 1 0 0 1 1 1 0 Tetraspanin family STT3 PF02516.9 gi|119719551|ref|YP_920046.1| - 2.5e-37 128.9 33.3 3.6e-37 128.4 23.1 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|119719551|ref|YP_920046.1| - 0.00011 22.1 17.6 0.00011 22.1 12.2 4.2 3 1 2 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Nop10p PF04135.7 gi|298205346|ref|YP_003717798.1| - 1e-24 85.9 1.5 1.3e-24 85.6 1.1 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DZR PF12773.2 gi|298205346|ref|YP_003717798.1| - 0.018 14.8 0.6 0.026 14.3 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|298205346|ref|YP_003717798.1| - 0.027 14.1 1.0 0.038 13.6 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.3 gi|298205346|ref|YP_003717798.1| - 0.049 13.5 2.0 0.077 12.9 1.4 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.10 gi|298205346|ref|YP_003717798.1| - 0.064 12.6 0.3 0.097 12.1 0.2 1.3 1 0 0 1 1 1 0 RecR protein zf-NADH-PPase PF09297.6 gi|298205346|ref|YP_003717798.1| - 0.1 12.1 3.8 5.5 6.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-CCHC_4 PF14392.1 gi|298205346|ref|YP_003717798.1| - 0.12 12.0 0.5 0.22 11.2 0.1 1.6 2 0 0 2 2 2 0 Zinc knuckle zinc_ribbon_2 PF13240.1 gi|298205346|ref|YP_003717798.1| - 0.18 11.3 5.2 0.92 9.0 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|298205346|ref|YP_003717798.1| - 0.43 10.6 5.8 0.75 9.8 0.6 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|298205346|ref|YP_003717798.1| - 0.91 8.8 7.6 1.1 8.5 1.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|298205346|ref|YP_003717798.1| - 1.8 8.5 5.2 48 4.0 3.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|298205346|ref|YP_003717798.1| - 1.9 8.4 5.6 0.82 9.6 0.4 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|298205346|ref|YP_003717798.1| - 2 7.7 5.8 7.4 5.9 1.2 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|298205346|ref|YP_003717798.1| - 3.2 7.3 6.6 4.5 6.8 0.5 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-tcix PF14952.1 gi|298205346|ref|YP_003717798.1| - 7.2 6.0 9.0 4 6.8 1.0 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding EIF_2_alpha PF07541.7 gi|119719552|ref|YP_920047.1| - 1.9e-24 85.5 0.0 3.6e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|119719552|ref|YP_920047.1| - 3.6e-11 42.9 0.6 2.9e-10 40.0 0.2 2.1 2 0 0 2 2 2 1 S1 RNA binding domain DUF1633 PF07794.6 gi|119719552|ref|YP_920047.1| - 0.0084 14.1 0.1 0.1 10.5 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1633) DASH_Dad2 PF08654.5 gi|119719552|ref|YP_920047.1| - 0.012 15.6 0.3 0.22 11.5 0.0 2.5 1 1 2 3 3 3 0 DASH complex subunit Dad2 Dermcidin PF15291.1 gi|119719552|ref|YP_920047.1| - 0.058 13.5 0.3 0.15 12.2 0.1 1.8 1 1 1 2 2 2 0 Dermcidin, antibiotic peptide Ribosomal_S27e PF01667.12 gi|119719553|ref|YP_920048.1| - 5e-24 83.5 0.4 5.7e-24 83.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|119719553|ref|YP_920048.1| - 1.6e-05 23.9 1.3 0.019 14.1 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|119719553|ref|YP_920048.1| - 3e-05 23.6 0.1 3.4e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|119719553|ref|YP_920048.1| - 4e-05 23.1 1.7 0.06 12.9 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719553|ref|YP_920048.1| - 5.4e-05 22.8 1.9 0.064 12.9 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119719553|ref|YP_920048.1| - 9e-05 21.8 1.6 0.11 11.9 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|119719553|ref|YP_920048.1| - 0.00014 21.2 2.7 0.059 12.8 0.4 2.2 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.7 gi|119719553|ref|YP_920048.1| - 0.00019 21.1 1.6 0.24 11.2 0.3 2.1 2 0 0 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Mu-like_Com PF10122.4 gi|119719553|ref|YP_920048.1| - 0.00027 19.9 0.9 0.00042 19.3 0.6 1.3 1 0 0 1 1 1 1 Mu-like prophage protein Com RNA_POL_M_15KD PF02150.11 gi|119719553|ref|YP_920048.1| - 0.00033 20.2 0.3 0.0026 17.3 0.4 2.0 1 1 1 2 2 2 1 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|119719553|ref|YP_920048.1| - 0.00035 20.4 1.9 0.00074 19.4 1.4 1.5 1 1 1 2 2 2 1 Zinc ribbon domain IBR PF01485.16 gi|119719553|ref|YP_920048.1| - 0.0006 19.6 0.3 0.00068 19.4 0.2 1.1 1 0 0 1 1 1 1 IBR domain DNA_ligase_ZBD PF03119.11 gi|119719553|ref|YP_920048.1| - 0.00099 18.7 0.7 0.38 10.4 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|119719553|ref|YP_920048.1| - 0.0021 17.8 0.3 0.0029 17.3 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|119719553|ref|YP_920048.1| - 0.0026 17.3 0.4 0.0034 17.0 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_6 PF14599.1 gi|119719553|ref|YP_920048.1| - 0.0034 17.1 0.3 0.0047 16.6 0.2 1.2 1 0 0 1 1 1 1 Zinc-ribbon DUF164 PF02591.10 gi|119719553|ref|YP_920048.1| - 0.0041 16.9 0.6 2.2 8.1 0.0 2.1 2 0 0 2 2 2 1 Putative zinc ribbon domain Lar_restr_allev PF14354.1 gi|119719553|ref|YP_920048.1| - 0.0057 16.9 0.6 0.074 13.3 0.4 2.0 1 1 0 1 1 1 1 Restriction alleviation protein Lar DUF35_N PF12172.3 gi|119719553|ref|YP_920048.1| - 0.0078 16.0 0.3 4.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|119719553|ref|YP_920048.1| - 0.011 15.0 3.3 0.03 13.6 2.3 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|119719553|ref|YP_920048.1| - 0.012 14.7 1.4 0.47 9.6 1.7 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS91 PF14319.1 gi|119719553|ref|YP_920048.1| - 0.017 14.6 0.2 0.021 14.3 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-HIT PF04438.11 gi|119719553|ref|YP_920048.1| - 0.018 14.6 0.9 1.2 8.7 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|119719553|ref|YP_920048.1| - 0.018 14.4 1.6 3.1 7.3 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-FPG_IleRS PF06827.9 gi|119719553|ref|YP_920048.1| - 0.019 14.6 1.2 3.4 7.3 0.1 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.6 gi|119719553|ref|YP_920048.1| - 0.02 14.3 0.5 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF3133 PF11331.3 gi|119719553|ref|YP_920048.1| - 0.023 14.2 1.4 3 7.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3133) Zn_ribbon_recom PF13408.1 gi|119719553|ref|YP_920048.1| - 0.024 14.9 2.5 1.6 9.0 0.1 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2H2 PF00096.21 gi|119719553|ref|YP_920048.1| - 0.025 14.9 1.1 8.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-AN1 PF01428.11 gi|119719553|ref|YP_920048.1| - 0.028 14.2 1.0 5.3 7.0 0.0 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger Zn_Tnp_IS1595 PF12760.2 gi|119719553|ref|YP_920048.1| - 0.029 14.1 3.8 0.1 12.4 2.7 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-BED PF02892.10 gi|119719553|ref|YP_920048.1| - 0.036 13.8 1.7 0.24 11.1 0.2 2.0 1 1 1 2 2 2 0 BED zinc finger DUF3797 PF12677.2 gi|119719553|ref|YP_920048.1| - 0.038 13.6 3.6 2.5 7.7 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-LITAF-like PF10601.4 gi|119719553|ref|YP_920048.1| - 0.038 13.8 2.0 4.2 7.3 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-C2HC5 PF06221.8 gi|119719553|ref|YP_920048.1| - 0.041 13.6 1.0 0.068 12.9 0.7 1.4 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type YhfH PF14149.1 gi|119719553|ref|YP_920048.1| - 0.044 13.5 0.7 2.8 7.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-tcix PF14952.1 gi|119719553|ref|YP_920048.1| - 0.045 13.0 2.7 1.8 7.9 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1922 PF09082.5 gi|119719553|ref|YP_920048.1| - 0.051 13.6 0.4 0.065 13.3 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) zf-ISL3 PF14690.1 gi|119719553|ref|YP_920048.1| - 0.054 13.5 5.8 1.7 8.7 0.2 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF329 PF03884.9 gi|119719553|ref|YP_920048.1| - 0.056 13.0 3.7 0.91 9.1 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-RING_3 PF14369.1 gi|119719553|ref|YP_920048.1| - 0.066 13.2 1.8 3.6 7.6 0.0 2.1 1 1 1 2 2 2 0 zinc-finger Sgf11 PF08209.6 gi|119719553|ref|YP_920048.1| - 0.066 12.5 1.4 1.2 8.5 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Tmemb_55A PF09788.4 gi|119719553|ref|YP_920048.1| - 0.075 12.1 0.3 0.08 12.0 0.2 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A XPA_N PF01286.13 gi|119719553|ref|YP_920048.1| - 0.088 12.4 0.3 2.4 7.8 0.0 2.1 2 0 0 2 2 2 0 XPA protein N-terminal Zn_Tnp_IS1 PF03811.8 gi|119719553|ref|YP_920048.1| - 0.11 12.0 4.7 0.85 9.1 0.1 2.5 3 0 0 3 3 2 0 InsA N-terminal domain TerY-C PF15616.1 gi|119719553|ref|YP_920048.1| - 0.11 12.4 0.2 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain DUF1272 PF06906.6 gi|119719553|ref|YP_920048.1| - 0.13 12.1 1.8 5.2 7.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF723 PF05265.8 gi|119719553|ref|YP_920048.1| - 0.15 11.8 1.5 0.23 11.2 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF723) Desulfoferrod_N PF06397.7 gi|119719553|ref|YP_920048.1| - 0.17 11.2 3.7 3.9 6.9 0.1 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain UPF0547 PF10571.4 gi|119719553|ref|YP_920048.1| - 0.2 11.3 6.3 1.3 8.7 4.3 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|119719553|ref|YP_920048.1| - 0.22 11.6 7.7 0.53 10.4 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc-ribbons_6 PF07191.7 gi|119719553|ref|YP_920048.1| - 0.23 11.2 1.7 1.5 8.6 1.3 1.9 1 1 2 3 3 3 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|119719553|ref|YP_920048.1| - 0.32 10.7 2.9 2.5 7.8 2.2 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C2H2_3 PF13878.1 gi|119719553|ref|YP_920048.1| - 0.33 10.5 3.4 6.7 6.3 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO A2L_zn_ribbon PF08792.5 gi|119719553|ref|YP_920048.1| - 0.34 10.4 1.7 4.6 6.8 1.2 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|119719553|ref|YP_920048.1| - 0.35 10.5 2.7 10 5.8 0.2 2.4 2 1 0 2 2 2 0 Nudix N-terminal zf-Mss51 PF13824.1 gi|119719553|ref|YP_920048.1| - 0.41 10.5 3.9 8.6 6.3 2.7 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 PhnA_Zn_Ribbon PF08274.7 gi|119719553|ref|YP_920048.1| - 0.44 10.3 2.0 7.8 6.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-IS66 PF13005.2 gi|119719553|ref|YP_920048.1| - 0.54 10.2 4.7 11 6.1 0.2 2.3 1 1 2 3 3 3 0 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.13 gi|119719553|ref|YP_920048.1| - 0.55 9.9 5.3 8.9 6.0 0.1 2.2 1 1 0 2 2 2 0 Transcription factor S-II (TFIIS) CpXC PF14353.1 gi|119719553|ref|YP_920048.1| - 0.74 9.7 2.8 14 5.6 0.1 2.1 1 1 1 2 2 2 0 CpXC protein ADK_lid PF05191.9 gi|119719553|ref|YP_920048.1| - 1.2 8.8 4.0 7.6 6.3 2.7 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF1936 PF09151.5 gi|119719553|ref|YP_920048.1| - 1.6 8.2 5.0 4.4 6.8 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zf-H2C2_2 PF13465.1 gi|119719553|ref|YP_920048.1| - 2.4 8.6 8.0 4 7.9 1.5 2.2 1 1 1 2 2 2 0 Zinc-finger double domain zf-CCHC_6 PF15288.1 gi|119719553|ref|YP_920048.1| - 4.8 6.9 8.4 24 4.6 0.1 2.9 3 0 0 3 3 3 0 Zinc knuckle Ribosomal_L44 PF00935.14 gi|119719554|ref|YP_920049.1| - 9.4e-29 99.2 11.8 9.4e-29 99.2 8.2 1.5 1 1 1 2 2 2 1 Ribosomal protein L44 zf-FPG_IleRS PF06827.9 gi|119719554|ref|YP_920049.1| - 0.0023 17.5 2.1 0.051 13.2 0.2 2.4 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS Rubredoxin PF00301.15 gi|119719554|ref|YP_920049.1| - 0.0051 16.6 1.7 0.06 13.2 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin C1_1 PF00130.17 gi|119719554|ref|YP_920049.1| - 0.016 14.9 0.8 0.07 12.8 0.1 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_5 PF13719.1 gi|119719554|ref|YP_920049.1| - 0.034 13.7 3.6 0.67 9.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719554|ref|YP_920049.1| - 0.044 13.4 3.8 0.63 9.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|119719554|ref|YP_920049.1| - 0.05 12.6 2.8 1.2 8.2 0.1 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-ISL3 PF14690.1 gi|119719554|ref|YP_920049.1| - 0.051 13.6 2.2 1.4 9.0 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RecR PF02132.10 gi|119719554|ref|YP_920049.1| - 0.17 11.3 2.3 0.83 9.1 0.1 2.2 2 0 0 2 2 2 0 RecR protein ADK_lid PF05191.9 gi|119719554|ref|YP_920049.1| - 0.68 9.6 3.0 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF1660 PF07874.6 gi|119719554|ref|YP_920049.1| - 0.76 10.1 3.3 4.1 7.7 0.1 2.3 2 0 0 2 2 2 0 Prophage protein (DUF1660) DZR PF12773.2 gi|119719554|ref|YP_920049.1| - 0.9 9.4 3.2 3.7 7.4 2.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon PyrI_C PF02748.10 gi|119719554|ref|YP_920049.1| - 1 8.8 3.7 0.27 10.6 0.2 1.8 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain IBR PF01485.16 gi|119719554|ref|YP_920049.1| - 1.7 8.5 4.7 4.9 7.1 3.0 1.8 1 1 0 1 1 1 0 IBR domain Elf1 PF05129.8 gi|119719554|ref|YP_920049.1| - 1.9 8.2 7.9 14 5.5 3.0 2.5 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like PGC7_Stella PF15549.1 gi|119719554|ref|YP_920049.1| - 2.2 8.2 5.4 2.6 8.0 3.8 1.1 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain Rpr2 PF04032.11 gi|119719554|ref|YP_920049.1| - 3.2 7.6 7.3 9.4 6.1 5.0 1.8 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain GTP_EFTU PF00009.22 gi|119719557|ref|YP_920052.1| - 2e-55 187.1 0.0 2.2e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|119719557|ref|YP_920052.1| - 2.5e-29 101.3 0.0 6.7e-29 99.9 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|119719557|ref|YP_920052.1| - 5.1e-19 68.1 1.2 9.8e-19 67.2 0.8 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|119719557|ref|YP_920052.1| - 8.7e-09 34.8 1.1 1.9e-08 33.8 0.8 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|119719557|ref|YP_920052.1| - 3.1e-07 30.3 0.0 1.1e-06 28.6 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|119719557|ref|YP_920052.1| - 0.0007 20.0 0.0 0.0035 17.8 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein Gtr1_RagA PF04670.7 gi|119719557|ref|YP_920052.1| - 0.0031 16.6 0.0 0.0091 15.1 0.0 1.7 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|119719557|ref|YP_920052.1| - 0.05 12.8 0.0 1.5 7.9 0.0 2.4 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|119719557|ref|YP_920052.1| - 0.1 12.4 0.0 4.2 7.1 0.0 2.4 1 1 0 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.17 gi|119719558|ref|YP_920053.1| - 1.1e-26 92.4 0.1 1.3e-26 92.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e KorB_C PF06613.6 gi|119719558|ref|YP_920053.1| - 0.053 12.9 1.1 0.27 10.7 0.4 2.0 2 0 0 2 2 2 0 KorB C-terminal beta-barrel domain zf-ZPR1 PF03367.8 gi|119719559|ref|YP_920054.1| - 1.7e-30 105.3 0.0 2.1e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain UPF0547 PF10571.4 gi|119719559|ref|YP_920054.1| - 0.03 14.0 1.4 0.086 12.5 0.9 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|119719559|ref|YP_920054.1| - 0.032 14.5 0.1 0.054 13.7 0.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|119719559|ref|YP_920054.1| - 0.082 12.8 2.3 0.66 9.9 0.0 2.5 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.1 gi|119719559|ref|YP_920054.1| - 0.086 12.0 3.5 0.35 10.1 2.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|119719559|ref|YP_920054.1| - 0.088 12.3 0.6 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|119719559|ref|YP_920054.1| - 0.089 12.6 0.1 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|119719559|ref|YP_920054.1| - 0.1 12.5 0.4 13 5.8 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|119719559|ref|YP_920054.1| - 0.15 11.7 0.8 0.3 10.8 0.5 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|119719559|ref|YP_920054.1| - 0.16 11.4 0.2 0.36 10.3 0.1 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif ADK_lid PF05191.9 gi|119719559|ref|YP_920054.1| - 0.23 11.1 1.3 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|119719559|ref|YP_920054.1| - 3.2 7.3 5.0 39 3.9 3.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|119719560|ref|YP_920055.1| - 7.7e-16 57.5 2.4 1.1e-15 57.0 1.7 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FYDLN_acid PF09538.5 gi|119719560|ref|YP_920055.1| - 0.0027 18.2 0.0 0.0034 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) DZR PF12773.2 gi|119719560|ref|YP_920055.1| - 0.0035 17.1 0.3 0.0053 16.5 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|119719560|ref|YP_920055.1| - 0.0057 15.9 1.2 0.0096 15.2 0.8 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding GFA PF04828.9 gi|119719560|ref|YP_920055.1| - 0.012 15.5 0.1 4.2 7.3 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Prok-RING_1 PF14446.1 gi|119719560|ref|YP_920055.1| - 0.014 15.1 0.3 0.021 14.5 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|119719560|ref|YP_920055.1| - 0.024 14.4 0.3 0.039 13.7 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-ISL3 PF14690.1 gi|119719560|ref|YP_920055.1| - 0.049 13.6 0.2 0.6 10.1 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|119719560|ref|YP_920055.1| - 0.064 12.4 0.7 3.9 6.7 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger HypA PF01155.14 gi|119719560|ref|YP_920055.1| - 0.065 12.9 1.7 0.14 11.8 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|119719560|ref|YP_920055.1| - 0.065 12.8 2.0 0.11 12.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119719560|ref|YP_920055.1| - 0.073 12.5 1.3 0.38 10.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Trm112p PF03966.11 gi|119719560|ref|YP_920055.1| - 0.078 13.3 1.4 0.21 11.9 1.0 1.7 1 1 0 1 1 1 0 Trm112p-like protein DUF2318 PF10080.4 gi|119719560|ref|YP_920055.1| - 0.089 12.5 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DUF2072 PF09845.4 gi|119719560|ref|YP_920055.1| - 0.11 12.3 0.1 1.4 8.8 0.0 2.1 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Ogr_Delta PF04606.7 gi|119719560|ref|YP_920055.1| - 0.12 12.0 0.7 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2_3 PF13878.1 gi|119719560|ref|YP_920055.1| - 0.12 11.9 0.5 0.84 9.2 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.1 gi|119719560|ref|YP_920055.1| - 0.14 11.4 0.5 0.14 11.4 0.3 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719560|ref|YP_920055.1| - 0.17 11.5 2.0 0.31 10.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF4428 PF14471.1 gi|119719560|ref|YP_920055.1| - 0.2 11.4 0.8 1.2 8.9 0.2 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4428) Zn_Tnp_IS1595 PF12760.2 gi|119719560|ref|YP_920055.1| - 0.26 11.1 0.3 0.26 11.1 0.2 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|119719560|ref|YP_920055.1| - 0.48 9.9 3.7 2.4 7.7 0.3 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-HIT PF04438.11 gi|119719560|ref|YP_920055.1| - 0.67 9.6 3.8 2.4 7.8 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|119719560|ref|YP_920055.1| - 0.75 9.7 5.8 2.2 8.2 0.2 2.7 2 1 1 3 3 2 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|119719560|ref|YP_920055.1| - 0.84 9.6 3.3 4.3 7.4 0.1 2.2 1 1 1 2 2 2 0 zinc-finger zf-RING_4 PF14570.1 gi|119719560|ref|YP_920055.1| - 2.3 7.8 4.9 13 5.5 0.3 2.2 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain zf-CCHC_5 PF14787.1 gi|119719560|ref|YP_920055.1| - 3.7 7.1 5.9 2.6 7.6 0.3 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger NTP_transf_2 PF01909.18 gi|119719561|ref|YP_920056.1| - 3.8e-06 27.1 0.3 7.9e-06 26.1 0.2 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain HTH_24 PF13412.1 gi|119719561|ref|YP_920056.1| - 0.075 12.4 0.1 0.4 10.1 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|119719561|ref|YP_920056.1| - 0.19 11.4 1.1 0.42 10.3 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Helicase_C PF00271.26 gi|119719562|ref|YP_920057.1| - 1.5e-16 60.0 0.1 4.5e-16 58.4 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|119719562|ref|YP_920057.1| - 2.6e-13 50.2 0.2 8.4e-12 45.2 0.1 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|119719562|ref|YP_920057.1| - 1.1e-05 24.4 0.0 1.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.24 gi|119719562|ref|YP_920057.1| - 9.2e-05 22.0 0.0 0.0012 18.3 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase RecX PF02631.11 gi|119719562|ref|YP_920057.1| - 0.0033 17.6 0.1 0.1 12.7 0.0 2.8 3 0 0 3 3 3 1 RecX family Ribosomal_S3Ae PF01015.13 gi|119719563|ref|YP_920058.1| - 1.2e-68 230.3 8.3 1.3e-68 230.1 5.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DHH PF01368.15 gi|119719564|ref|YP_920059.1| - 5.4e-11 42.3 0.0 9.3e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|119719564|ref|YP_920059.1| - 7.3e-08 32.0 3.0 1.7e-07 30.8 2.1 1.6 1 0 0 1 1 1 1 DHHA1 domain Ank PF00023.25 gi|119719564|ref|YP_920059.1| - 0.035 13.9 0.2 1.1 9.2 0.1 2.8 3 0 0 3 3 3 0 Ankyrin repeat NTase_sub_bind PF08780.6 gi|119719565|ref|YP_920060.1| - 0.024 14.4 0.2 0.056 13.2 0.0 1.5 1 1 1 2 2 2 0 Nucleotidyltransferase substrate binding protein like BSD PF03909.12 gi|119719565|ref|YP_920060.1| - 0.029 14.1 2.2 4.4 7.1 0.2 2.2 2 0 0 2 2 2 0 BSD domain SPOB_ab PF14682.1 gi|119719565|ref|YP_920060.1| - 0.065 13.0 1.7 0.87 9.3 1.2 1.9 1 1 0 1 1 1 0 Sporulation initiation phospho-transferase B, C-terminal SATase_N PF06426.9 gi|119719565|ref|YP_920060.1| - 0.095 12.9 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal VASP_tetra PF08776.6 gi|119719565|ref|YP_920060.1| - 4.6 6.6 7.1 1.8 7.9 2.4 2.1 2 0 0 2 2 2 0 VASP tetramerisation domain DUF3886 PF13025.1 gi|119719565|ref|YP_920060.1| - 8 6.5 7.7 0.35 10.8 0.6 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3886) Prefoldin_2 PF01920.15 gi|119719566|ref|YP_920061.1| - 3e-16 59.0 7.6 3.3e-16 58.9 5.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit DHC_N1 PF08385.7 gi|119719566|ref|YP_920061.1| - 0.039 12.3 0.4 0.044 12.1 0.3 1.0 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 DUF4201 PF13870.1 gi|119719566|ref|YP_920061.1| - 0.044 13.2 5.2 1.3 8.4 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Lge1 PF11488.3 gi|119719566|ref|YP_920061.1| - 0.045 13.9 1.3 0.084 13.0 0.5 1.8 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 DegS PF05384.6 gi|119719566|ref|YP_920061.1| - 0.11 11.6 3.4 0.25 10.5 0.7 2.0 2 0 0 2 2 2 0 Sensor protein DegS Snapin_Pallidin PF14712.1 gi|119719566|ref|YP_920061.1| - 0.39 11.0 5.6 6.2 7.2 0.1 2.2 2 0 0 2 2 2 0 Snapin/Pallidin GP41 PF00517.12 gi|119719566|ref|YP_920061.1| - 0.68 9.4 4.0 0.76 9.3 0.2 2.0 2 0 0 2 2 2 0 Retroviral envelope protein Suppressor_APC PF11414.3 gi|119719566|ref|YP_920061.1| - 0.74 9.6 7.2 0.29 10.9 1.1 2.3 2 1 0 2 2 2 0 Adenomatous polyposis coli tumour suppressor protein CCDC155 PF14662.1 gi|119719566|ref|YP_920061.1| - 0.95 9.0 11.8 9.2 5.8 8.2 2.0 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 SSFA2_C PF14723.1 gi|119719566|ref|YP_920061.1| - 1 9.0 8.8 1.3 8.7 6.1 1.2 1 0 0 1 1 1 0 Sperm-specific antigen 2 C-terminus Prefoldin PF02996.12 gi|119719566|ref|YP_920061.1| - 1.1 8.9 8.6 2.7e+02 1.2 6.0 2.3 1 1 0 1 1 1 0 Prefoldin subunit MscS_porin PF12795.2 gi|119719566|ref|YP_920061.1| - 1.5 8.0 12.2 0.24 10.6 1.1 2.3 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF3847 PF12958.2 gi|119719566|ref|YP_920061.1| - 1.6 8.5 11.7 0.39 10.4 4.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) CDC37_N PF03234.9 gi|119719566|ref|YP_920061.1| - 5.6 7.2 7.0 21 5.3 0.2 2.0 1 1 1 2 2 2 0 Cdc37 N terminal kinase binding DUF4200 PF13863.1 gi|119719566|ref|YP_920061.1| - 7.6 6.5 12.8 0.87 9.5 4.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) CarboxypepD_reg PF13620.1 gi|119719567|ref|YP_920062.1| - 4.5e-12 45.8 9.3 4.6e-06 26.6 0.5 6.3 7 0 0 7 7 7 3 Carboxypeptidase regulatory-like domain AraC_binding_2 PF14525.1 gi|119719567|ref|YP_920062.1| - 0.059 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AraC-binding-like domain SFTA2 PF15210.1 gi|119719567|ref|YP_920062.1| - 0.13 11.8 0.3 0.5 9.9 0.2 2.0 1 0 0 1 1 1 0 Surfactant-associated protein 2 Radical_SAM PF04055.16 gi|119719568|ref|YP_920063.1| - 1.7e-14 54.3 0.0 3.8e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily tRNA-synt_His PF13393.1 gi|119719569|ref|YP_920064.1| - 8e-64 215.6 0.0 1.1e-63 215.2 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|119719569|ref|YP_920064.1| - 3.3e-22 78.8 0.0 5.1e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|119719569|ref|YP_920064.1| - 8.1e-16 57.7 0.2 1.8e-15 56.6 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|119719569|ref|YP_920064.1| - 0.00025 19.9 0.2 0.14 10.9 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|119719569|ref|YP_920064.1| - 0.015 14.5 0.0 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) bact-PGI_C PF10432.4 gi|119719570|ref|YP_920065.1| - 2.5e-45 153.9 0.0 5.9e-45 152.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|119719570|ref|YP_920065.1| - 1.3e-06 28.0 0.4 1.2e-05 24.9 0.1 2.5 2 2 1 3 3 3 1 SIS domain SIS_2 PF13580.1 gi|119719570|ref|YP_920065.1| - 0.01 15.5 0.0 0.026 14.2 0.0 1.7 1 0 0 1 1 1 0 SIS domain EF1_GNE PF00736.14 gi|119719571|ref|YP_920066.1| - 2.2e-21 75.3 0.1 2.4e-21 75.2 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|119719572|ref|YP_920067.1| - 1.1e-18 67.0 22.1 4.9e-11 42.5 3.8 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|119719572|ref|YP_920067.1| - 8.3e-05 21.9 19.0 0.0005 19.4 2.3 3.5 2 2 0 2 2 2 1 zinc-ribbon domain PolC_DP2 PF03833.8 gi|119719572|ref|YP_920067.1| - 0.00039 18.2 5.4 0.00042 18.1 3.8 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 DZR PF12773.2 gi|119719572|ref|YP_920067.1| - 0.00047 19.9 12.1 0.012 15.4 8.4 2.4 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|119719572|ref|YP_920067.1| - 0.0011 18.1 17.7 0.08 12.1 0.2 4.0 3 1 0 3 3 3 3 zinc-ribbon domain zf-B_box PF00643.19 gi|119719572|ref|YP_920067.1| - 0.0032 17.3 7.9 0.011 15.5 2.9 2.5 1 1 0 2 2 2 1 B-box zinc finger PhnA_Zn_Ribbon PF08274.7 gi|119719572|ref|YP_920067.1| - 0.011 15.5 12.5 3.4 7.5 4.7 3.6 1 1 1 2 2 2 0 PhnA Zinc-Ribbon DUF1272 PF06906.6 gi|119719572|ref|YP_920067.1| - 0.013 15.3 10.9 2.4 8.0 7.5 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DUF35_N PF12172.3 gi|119719572|ref|YP_920067.1| - 0.013 15.3 12.8 2 8.4 0.0 3.9 3 1 1 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.5 gi|119719572|ref|YP_920067.1| - 0.018 14.5 15.4 0.31 10.5 4.0 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain HypA PF01155.14 gi|119719572|ref|YP_920067.1| - 0.024 14.3 0.4 0.024 14.3 0.3 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2296 PF10058.4 gi|119719572|ref|YP_920067.1| - 0.024 14.3 16.4 0.82 9.4 1.9 3.6 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) OrfB_Zn_ribbon PF07282.6 gi|119719572|ref|YP_920067.1| - 0.033 13.8 12.6 0.2 11.3 0.9 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|119719572|ref|YP_920067.1| - 0.033 13.8 11.5 0.67 9.6 4.7 3.4 2 1 0 2 2 2 0 Nudix N-terminal IBR PF01485.16 gi|119719572|ref|YP_920067.1| - 0.043 13.6 10.4 0.1 12.4 4.0 2.1 1 1 1 2 2 2 0 IBR domain zf-UBP PF02148.14 gi|119719572|ref|YP_920067.1| - 0.048 13.7 1.4 0.048 13.7 1.0 2.2 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein FYVE_2 PF02318.11 gi|119719572|ref|YP_920067.1| - 0.06 13.2 5.2 0.071 13.0 3.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-C2HC5 PF06221.8 gi|119719572|ref|YP_920067.1| - 0.083 12.6 10.1 0.043 13.5 1.5 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Prok-RING_1 PF14446.1 gi|119719572|ref|YP_920067.1| - 0.1 12.3 10.8 0.15 11.8 0.4 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|119719572|ref|YP_920067.1| - 0.14 11.9 9.6 2.4 7.9 6.7 2.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_5 PF14634.1 gi|119719572|ref|YP_920067.1| - 0.15 11.8 10.8 0.48 10.1 7.5 2.0 1 1 0 1 1 1 0 zinc-RING finger domain Zn_Tnp_IS1595 PF12760.2 gi|119719572|ref|YP_920067.1| - 0.15 11.8 23.5 0.86 9.4 0.4 3.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-MYND PF01753.13 gi|119719572|ref|YP_920067.1| - 0.17 11.7 12.7 0.32 10.8 0.5 2.1 2 0 0 2 2 2 0 MYND finger zf-UBR PF02207.15 gi|119719572|ref|YP_920067.1| - 0.2 11.4 9.9 6 6.6 6.9 2.3 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-C2H2 PF00096.21 gi|119719572|ref|YP_920067.1| - 0.2 12.0 15.7 7.6 7.1 0.5 4.1 4 0 0 4 4 4 0 Zinc finger, C2H2 type NOB1_Zn_bind PF08772.6 gi|119719572|ref|YP_920067.1| - 0.21 11.4 11.3 1.4 8.7 3.4 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like C1_3 PF07649.7 gi|119719572|ref|YP_920067.1| - 0.29 11.1 12.0 0.52 10.3 1.7 2.5 2 1 0 2 2 2 0 C1-like domain zf-HIT PF04438.11 gi|119719572|ref|YP_920067.1| - 0.34 10.5 20.6 1.5 8.5 5.6 3.3 2 2 0 2 2 2 0 HIT zinc finger zinc_ribbon_4 PF13717.1 gi|119719572|ref|YP_920067.1| - 0.35 10.6 19.4 0.43 10.3 0.1 4.0 2 1 1 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|119719572|ref|YP_920067.1| - 0.37 10.4 19.1 0.39 10.3 0.1 4.0 2 1 1 4 4 4 0 zinc-ribbon domain Sgf11 PF08209.6 gi|119719572|ref|YP_920067.1| - 0.5 9.7 18.8 0.89 8.9 0.1 4.0 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) Lar_restr_allev PF14354.1 gi|119719572|ref|YP_920067.1| - 0.76 10.1 12.7 0.32 11.3 5.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-Mss51 PF13824.1 gi|119719572|ref|YP_920067.1| - 0.84 9.5 14.4 3.7 7.4 2.1 2.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.8 gi|119719572|ref|YP_920067.1| - 1.1 8.8 13.8 21 4.6 5.6 3.3 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|119719572|ref|YP_920067.1| - 1.3 9.0 19.4 2.8 7.9 3.1 3.9 2 2 2 4 4 4 0 Zinc ribbon domain TerY-C PF15616.1 gi|119719572|ref|YP_920067.1| - 1.3 8.9 12.5 0.15 12.0 5.1 1.8 1 1 1 2 2 2 0 TerY-C metal binding domain DUF4206 PF13901.1 gi|119719572|ref|YP_920067.1| - 1.5 8.3 6.2 1.8 8.0 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) TF_Zn_Ribbon PF08271.7 gi|119719572|ref|YP_920067.1| - 1.6 8.1 18.0 3.6 6.9 3.7 3.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|119719572|ref|YP_920067.1| - 1.9 8.5 10.3 0.95 9.5 0.7 2.6 1 1 2 3 3 3 0 zinc-finger zf-dskA_traR PF01258.12 gi|119719572|ref|YP_920067.1| - 2.1 8.1 13.4 1.2 8.9 0.2 3.6 2 1 2 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger TFIIS_C PF01096.13 gi|119719572|ref|YP_920067.1| - 2.3 7.9 16.2 12 5.6 0.3 4.0 2 1 3 5 5 5 0 Transcription factor S-II (TFIIS) Ribosomal_L37ae PF01780.14 gi|119719572|ref|YP_920067.1| - 2.5 8.0 12.0 14 5.6 0.1 3.0 1 1 1 2 2 2 0 Ribosomal L37ae protein family Auto_anti-p27 PF06677.7 gi|119719572|ref|YP_920067.1| - 2.6 7.8 15.3 0.37 10.5 1.4 2.9 2 2 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NMD3 PF04981.8 gi|119719572|ref|YP_920067.1| - 2.6 7.1 8.3 3.2 6.8 5.8 1.0 1 0 0 1 1 1 0 NMD3 family zf-C3HC4_4 PF15227.1 gi|119719572|ref|YP_920067.1| - 2.8 7.8 8.9 4.4 7.2 0.8 2.3 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING ADK_lid PF05191.9 gi|119719572|ref|YP_920067.1| - 2.9 7.6 11.8 6 6.6 0.1 3.6 3 1 1 4 4 4 0 Adenylate kinase, active site lid zf-C2H2_4 PF13894.1 gi|119719572|ref|YP_920067.1| - 3 8.3 14.9 7.9 7.0 0.4 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger NinF PF05810.7 gi|119719572|ref|YP_920067.1| - 3.1 7.6 4.9 8 6.3 0.7 2.2 1 1 1 2 2 2 0 NinF protein ZZ PF00569.12 gi|119719572|ref|YP_920067.1| - 3.1 7.4 11.7 12 5.4 5.8 2.7 2 1 0 2 2 2 0 Zinc finger, ZZ type RNHCP PF12647.2 gi|119719572|ref|YP_920067.1| - 3.4 7.5 10.8 19 5.1 5.0 2.6 1 1 0 2 2 2 0 RNHCP domain DUF2321 PF10083.4 gi|119719572|ref|YP_920067.1| - 3.4 7.1 5.3 1 8.8 1.5 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Mut7-C PF01927.11 gi|119719572|ref|YP_920067.1| - 4.7 7.1 6.7 6.5 6.7 4.7 1.4 1 1 0 1 1 1 0 Mut7-C RNAse domain zf-H2C2_2 PF13465.1 gi|119719572|ref|YP_920067.1| - 4.9 7.6 19.4 4.3 7.8 0.9 3.9 3 1 1 4 4 4 0 Zinc-finger double domain zinc-ribbons_6 PF07191.7 gi|119719572|ref|YP_920067.1| - 5.2 6.9 10.2 4.6 7.1 4.7 2.2 1 1 1 2 2 2 0 zinc-ribbons Ribosomal_L44 PF00935.14 gi|119719572|ref|YP_920067.1| - 5.4 7.1 10.6 3.4 7.7 1.1 3.0 1 1 2 3 3 3 0 Ribosomal protein L44 DUF2072 PF09845.4 gi|119719572|ref|YP_920067.1| - 5.5 6.9 12.4 0.19 11.6 0.6 2.1 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Elf1 PF05129.8 gi|119719572|ref|YP_920067.1| - 5.7 6.7 10.3 0.37 10.5 3.3 1.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DNA_ligase_ZBD PF03119.11 gi|119719572|ref|YP_920067.1| - 6 6.6 12.8 3.6 7.3 1.8 3.3 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain PHD PF00628.24 gi|119719572|ref|YP_920067.1| - 6.1 6.6 14.5 1.2e+02 2.5 10.1 3.2 1 1 0 1 1 1 0 PHD-finger zf-TFIIB PF13453.1 gi|119719572|ref|YP_920067.1| - 6.5 6.0 15.8 30 3.8 0.2 3.4 2 1 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|119719572|ref|YP_920067.1| - 6.7 6.4 17.6 4.6 7.0 0.2 3.2 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|119719572|ref|YP_920067.1| - 7 6.6 18.4 2.8 7.8 0.3 3.9 2 2 1 3 3 3 0 Rubredoxin Tnp_zf-ribbon_2 PF13842.1 gi|119719572|ref|YP_920067.1| - 7.8 7.0 14.3 6.3e+02 0.8 9.9 2.7 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon zf-ISL3 PF14690.1 gi|119719572|ref|YP_920067.1| - 8.5 6.4 20.5 12 6.0 0.7 3.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS91 PF14319.1 gi|119719572|ref|YP_920067.1| - 9 5.8 11.4 45 3.5 7.9 2.0 1 1 0 1 1 1 0 Transposase zinc-binding domain LIM PF00412.17 gi|119719572|ref|YP_920067.1| - 9.2 6.4 9.2 4.8e+02 0.9 6.4 2.7 1 1 0 1 1 1 0 LIM domain DUF329 PF03884.9 gi|119719572|ref|YP_920067.1| - 10 5.7 16.6 1.9 8.0 2.7 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF329) zf-ribbon_3 PF13248.1 gi|119719573|ref|YP_920068.1| - 0.041 13.1 0.8 0.85 8.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Phage_holin_3 PF05106.7 gi|119719573|ref|YP_920068.1| - 0.051 13.5 0.5 0.068 13.1 0.4 1.2 1 0 0 1 1 1 0 Phage holin family (Lysis protein S) Grp1_Fun34_YaaH PF01184.14 gi|119719573|ref|YP_920068.1| - 0.055 12.7 0.2 0.071 12.4 0.2 1.1 1 0 0 1 1 1 0 GPR1/FUN34/yaaH family DUF2082 PF09855.4 gi|119719573|ref|YP_920068.1| - 0.059 13.2 0.3 5.7 6.8 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TFIIS_C PF01096.13 gi|119719573|ref|YP_920068.1| - 0.062 12.9 0.1 5.6 6.6 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4131 PF13567.1 gi|119719573|ref|YP_920068.1| - 0.075 12.4 1.8 0.11 11.9 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Mpv17_PMP22 PF04117.7 gi|119719573|ref|YP_920068.1| - 0.079 12.6 0.7 0.48 10.0 0.4 2.0 1 1 1 2 2 2 0 Mpv17 / PMP22 family Intg_mem_TP0381 PF09529.5 gi|119719573|ref|YP_920068.1| - 0.1 11.7 1.6 0.16 11.1 1.1 1.3 1 0 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) zf-C4_Topoisom PF01396.14 gi|119719573|ref|YP_920068.1| - 0.12 11.8 3.1 0.14 11.7 0.3 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.14 gi|119719573|ref|YP_920068.1| - 0.13 11.9 0.1 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF872 PF05915.7 gi|119719573|ref|YP_920068.1| - 0.15 11.9 0.1 0.29 10.9 0.1 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Zn-ribbon_8 PF09723.5 gi|119719573|ref|YP_920068.1| - 0.19 11.7 2.7 0.57 10.1 1.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-CCHC_5 PF14787.1 gi|119719573|ref|YP_920068.1| - 0.27 10.7 2.4 0.6 9.6 1.7 1.6 1 0 0 1 1 1 0 GAG-polyprotein viral zinc-finger DUF4229 PF14012.1 gi|119719573|ref|YP_920068.1| - 0.37 10.7 3.5 0.96 9.3 2.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4229) zinc_ribbon_2 PF13240.1 gi|119719573|ref|YP_920068.1| - 0.37 10.3 3.0 1.4 8.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|119719573|ref|YP_920068.1| - 0.7 9.9 0.1 0.7 9.9 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1936 PF09151.5 gi|119719573|ref|YP_920068.1| - 3.7 7.1 5.5 0.79 9.2 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Ribosomal_S27e PF01667.12 gi|119719574|ref|YP_920069.1| - 0.0029 17.0 12.1 0.041 13.4 0.1 2.8 2 1 0 2 2 2 1 Ribosomal protein S27 Prok-RING_1 PF14446.1 gi|119719574|ref|YP_920069.1| - 0.003 17.2 16.8 0.0076 15.9 9.3 2.7 2 1 0 2 2 2 1 Prokaryotic RING finger family 1 C1_3 PF07649.7 gi|119719574|ref|YP_920069.1| - 0.15 12.1 21.2 0.9 9.6 8.0 3.3 3 1 0 3 3 3 0 C1-like domain DZR PF12773.2 gi|119719574|ref|YP_920069.1| - 0.16 11.8 17.2 6.1 6.7 8.7 3.1 1 1 0 2 2 2 0 Double zinc ribbon zf-B_box PF00643.19 gi|119719574|ref|YP_920069.1| - 0.16 11.8 13.7 0.17 11.7 4.2 3.3 2 1 1 3 3 3 0 B-box zinc finger zf-RING_5 PF14634.1 gi|119719574|ref|YP_920069.1| - 0.28 10.9 14.0 0.043 13.5 7.0 1.7 2 0 0 2 2 2 0 zinc-RING finger domain zf-C2HC5 PF06221.8 gi|119719574|ref|YP_920069.1| - 0.38 10.5 20.0 2.4 7.9 6.1 3.1 1 1 2 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-C3HC4_3 PF13920.1 gi|119719574|ref|YP_920069.1| - 0.5 10.0 13.9 10 5.8 9.6 2.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Cript PF10235.4 gi|119719574|ref|YP_920069.1| - 0.53 10.6 19.0 0.16 12.3 4.1 2.5 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT zinc-ribbons_6 PF07191.7 gi|119719574|ref|YP_920069.1| - 0.93 9.3 9.9 2.4 7.9 5.4 2.4 2 1 0 2 2 2 0 zinc-ribbons C1_1 PF00130.17 gi|119719574|ref|YP_920069.1| - 1.7 8.3 15.3 1.2 8.9 5.9 3.0 1 1 2 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2752 PF10825.3 gi|119719574|ref|YP_920069.1| - 2 8.4 0.0 2 8.4 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2752) zf-ribbon_3 PF13248.1 gi|119719574|ref|YP_920069.1| - 4.5 6.6 21.4 55 3.1 2.9 4.5 2 1 1 3 3 3 0 zinc-ribbon domain ADK_lid PF05191.9 gi|119719574|ref|YP_920069.1| - 4.5 7.0 17.8 2.2 8.0 6.7 3.2 3 1 0 3 3 3 0 Adenylate kinase, active site lid Baculo_ME53 PF06061.6 gi|119719574|ref|YP_920069.1| - 5.4 5.9 10.4 0.37 9.7 3.7 1.6 1 1 0 1 1 1 0 Baculoviridae ME53 zf-FPG_IleRS PF06827.9 gi|119719574|ref|YP_920069.1| - 6.8 6.4 13.2 14 5.4 0.1 3.7 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-dskA_traR PF01258.12 gi|119719574|ref|YP_920069.1| - 7.9 6.3 21.8 0.67 9.7 0.2 4.6 3 1 2 5 5 5 0 Prokaryotic dksA/traR C4-type zinc finger PAPS_reduct PF01507.14 gi|119719575|ref|YP_920070.1| - 1.5e-41 142.1 0.0 2.4e-41 141.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|119719575|ref|YP_920070.1| - 1.7e-07 31.4 10.6 3.9e-07 30.3 7.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719575|ref|YP_920070.1| - 5.4e-07 29.3 9.2 1.2e-06 28.2 6.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain NAD_synthase PF02540.12 gi|119719575|ref|YP_920070.1| - 8.7e-06 24.8 0.0 1.5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Fer4_21 PF14697.1 gi|119719575|ref|YP_920070.1| - 2.9e-05 23.8 8.9 7e-05 22.6 6.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719575|ref|YP_920070.1| - 7.4e-05 22.6 10.3 0.0052 16.7 8.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719575|ref|YP_920070.1| - 0.0001 21.9 10.4 0.00043 20.0 1.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|119719575|ref|YP_920070.1| - 0.00021 20.7 10.3 0.0031 17.0 2.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|119719575|ref|YP_920070.1| - 0.00028 21.2 5.0 0.084 13.3 0.0 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119719575|ref|YP_920070.1| - 0.00035 20.7 11.2 0.0066 16.6 8.7 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Asn_synthase PF00733.16 gi|119719575|ref|YP_920070.1| - 0.0084 15.6 0.0 0.021 14.2 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase Fer4_11 PF13247.1 gi|119719575|ref|YP_920070.1| - 0.0086 15.9 4.1 0.015 15.1 2.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain tRNA_Me_trans PF03054.11 gi|119719575|ref|YP_920070.1| - 0.032 12.7 0.0 0.062 11.8 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase Fer4_15 PF13459.1 gi|119719575|ref|YP_920070.1| - 0.061 13.8 0.1 0.061 13.8 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain QueC PF06508.8 gi|119719575|ref|YP_920070.1| - 0.094 11.9 0.0 0.094 11.9 0.0 1.7 2 0 0 2 2 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|119719575|ref|YP_920070.1| - 0.11 11.9 0.0 2.7 7.4 0.0 2.6 3 0 0 3 3 3 0 PP-loop family ATP_bind_4 PF01902.12 gi|119719575|ref|YP_920070.1| - 0.13 11.5 0.0 0.25 10.6 0.0 1.4 1 0 0 1 1 1 0 ATP-binding region Fer4_16 PF13484.1 gi|119719575|ref|YP_920070.1| - 0.19 12.4 12.7 35 5.2 2.4 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|119719575|ref|YP_920070.1| - 0.24 11.7 14.1 0.66 10.3 2.9 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|119719575|ref|YP_920070.1| - 0.41 11.0 8.2 0.099 13.0 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|119719575|ref|YP_920070.1| - 0.58 10.1 11.5 0.21 11.4 1.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|119719575|ref|YP_920070.1| - 6.6 7.3 12.2 2.4 8.7 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|119719575|ref|YP_920070.1| - 7.5 7.3 22.7 1.9 9.2 3.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Topo-VIb_trans PF09239.6 gi|119719576|ref|YP_920071.1| - 7.6e-61 204.3 0.0 1.3e-60 203.5 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|119719576|ref|YP_920071.1| - 4.5e-17 61.7 0.0 1.1e-16 60.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|119719576|ref|YP_920071.1| - 4.4e-13 49.0 0.0 8.5e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|119719576|ref|YP_920071.1| - 0.0018 16.9 1.6 0.005 15.4 0.0 2.0 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) IMS_C PF11799.3 gi|119719576|ref|YP_920071.1| - 0.093 12.6 0.1 11 5.9 0.0 2.6 2 0 0 2 2 2 0 impB/mucB/samB family C-terminal domain TP6A_N PF04406.9 gi|119719577|ref|YP_920072.1| - 5.4e-22 77.2 0.1 1.1e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|119719577|ref|YP_920072.1| - 0.027 14.3 0.0 0.073 12.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function C-terminus (DUF2399) AsnC_trans_reg PF01037.16 gi|119719578|ref|YP_920073.1| - 5.4e-10 38.8 0.0 5.8e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 AsnC family HTH_33 PF13592.1 gi|119719579|ref|YP_920074.1| - 0.071 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HAP PF03866.8 gi|119719579|ref|YP_920074.1| - 3.6 7.3 8.9 0.5 10.1 0.4 2.3 2 0 0 2 2 2 0 Hydrophobic abundant protein (HAP) Arch_flagellin PF01917.11 gi|119719580|ref|YP_920075.1| - 0.092 12.3 0.3 0.22 11.1 0.1 1.6 1 1 1 2 2 2 0 Archaebacterial flagellin TGS PF02824.16 gi|119719588|ref|YP_920083.1| - 1.1e-16 60.3 0.2 2.5e-16 59.2 0.0 1.7 2 0 0 2 2 1 1 TGS domain PduV-EutP PF10662.4 gi|119719588|ref|YP_920083.1| - 5.1e-08 32.5 0.0 0.0044 16.5 0.0 2.5 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|119719588|ref|YP_920083.1| - 2.9e-07 30.4 0.0 7.6e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|119719588|ref|YP_920083.1| - 9e-05 21.9 0.0 0.14 11.5 0.0 3.0 2 1 0 3 3 3 2 Elongation factor Tu GTP binding domain CBS PF00571.23 gi|119719588|ref|YP_920083.1| - 0.00051 19.7 0.2 0.24 11.2 0.1 3.2 4 0 0 4 4 4 1 CBS domain Miro PF08477.8 gi|119719588|ref|YP_920083.1| - 0.00063 20.2 0.0 0.0018 18.7 0.0 1.8 2 0 0 2 2 2 1 Miro-like protein cobW PF02492.14 gi|119719588|ref|YP_920083.1| - 0.002 17.6 0.1 0.15 11.5 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|119719588|ref|YP_920083.1| - 0.0021 17.2 0.0 0.0043 16.2 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ABC_tran PF00005.22 gi|119719588|ref|YP_920083.1| - 0.0027 18.0 0.0 0.0063 16.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter YchF-GTPase_C PF06071.8 gi|119719588|ref|YP_920083.1| - 0.004 16.9 0.1 2.1 8.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF933) FeoB_N PF02421.13 gi|119719588|ref|YP_920083.1| - 0.0054 16.0 0.0 0.67 9.2 0.1 3.1 2 1 0 2 2 2 1 Ferrous iron transport protein B UPF0079 PF02367.12 gi|119719588|ref|YP_920083.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Dynamin_N PF00350.18 gi|119719588|ref|YP_920083.1| - 0.08 12.7 1.7 5.6 6.7 0.2 3.0 2 1 1 3 3 3 0 Dynamin family AAA_5 PF07728.9 gi|119719588|ref|YP_920083.1| - 0.14 11.9 0.4 17 5.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|119719589|ref|YP_920084.1| - 3e-102 338.0 0.0 7e-50 168.6 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|119719589|ref|YP_920084.1| - 6.2e-35 119.0 1.9 4.6e-34 116.2 1.5 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|119719589|ref|YP_920084.1| - 4.1e-16 58.3 2.1 6.7e-16 57.6 0.6 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|119719589|ref|YP_920084.1| - 5.1e-15 55.1 0.0 1.9e-07 30.3 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|119719589|ref|YP_920084.1| - 2.5e-14 53.5 0.0 8e-07 29.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|119719589|ref|YP_920084.1| - 3.6e-14 53.1 0.0 2.7e-06 27.4 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|119719589|ref|YP_920084.1| - 2.8e-13 50.1 0.9 8.8e-05 22.6 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|119719589|ref|YP_920084.1| - 7.6e-12 46.1 0.8 1e-05 26.3 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|119719589|ref|YP_920084.1| - 1e-11 44.6 1.3 0.00018 21.2 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|119719589|ref|YP_920084.1| - 1.3e-11 44.5 0.0 7.1e-06 25.9 0.0 3.0 3 0 0 3 3 2 2 AAA domain Vps4_C PF09336.5 gi|119719589|ref|YP_920084.1| - 1.2e-10 41.1 0.6 5.6e-07 29.3 0.0 2.9 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain TIP49 PF06068.8 gi|119719589|ref|YP_920084.1| - 2.3e-10 39.7 0.3 0.00051 18.8 0.0 2.9 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|119719589|ref|YP_920084.1| - 5.6e-10 39.2 0.0 0.00031 20.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|119719589|ref|YP_920084.1| - 8.1e-09 34.8 0.0 0.00063 18.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.1 gi|119719589|ref|YP_920084.1| - 1.7e-08 34.1 1.9 0.19 11.0 0.1 4.4 3 1 0 4 4 4 2 AAA domain IstB_IS21 PF01695.12 gi|119719589|ref|YP_920084.1| - 2.4e-08 33.6 0.1 0.0056 16.1 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|119719589|ref|YP_920084.1| - 8.2e-08 32.2 0.1 0.0039 16.9 0.0 3.6 2 1 1 3 3 3 2 Archaeal ATPase AAA_18 PF13238.1 gi|119719589|ref|YP_920084.1| - 1.5e-07 31.7 1.2 0.033 14.4 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_28 PF13521.1 gi|119719589|ref|YP_920084.1| - 3e-07 30.5 0.1 0.013 15.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|119719589|ref|YP_920084.1| - 3.2e-07 30.5 0.0 0.024 14.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_19 PF13245.1 gi|119719589|ref|YP_920084.1| - 3.2e-07 29.9 3.6 0.013 15.2 0.1 3.4 3 0 0 3 3 2 2 Part of AAA domain Mg_chelatase PF01078.16 gi|119719589|ref|YP_920084.1| - 5.2e-07 29.0 0.3 0.027 13.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|119719589|ref|YP_920084.1| - 1.3e-06 28.1 0.2 0.071 12.6 0.0 2.7 3 0 0 3 3 2 2 AAA domain Sigma54_activat PF00158.21 gi|119719589|ref|YP_920084.1| - 1.5e-06 27.7 0.2 0.21 11.0 0.0 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|119719589|ref|YP_920084.1| - 7.2e-06 25.8 0.1 0.036 13.7 0.0 3.8 4 1 0 4 4 4 1 Bacterial dnaA protein NACHT PF05729.7 gi|119719589|ref|YP_920084.1| - 7.6e-06 25.6 0.5 1 8.9 0.0 4.1 4 0 0 4 4 4 2 NACHT domain Sigma54_activ_2 PF14532.1 gi|119719589|ref|YP_920084.1| - 7.9e-06 25.9 0.0 0.19 11.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|119719589|ref|YP_920084.1| - 1.4e-05 24.1 0.1 0.057 12.2 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|119719589|ref|YP_920084.1| - 2.9e-05 23.4 0.3 0.21 10.8 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein KaiC PF06745.8 gi|119719589|ref|YP_920084.1| - 3.8e-05 22.9 0.7 0.22 10.6 0.0 3.3 2 1 1 3 3 3 2 KaiC DUF815 PF05673.8 gi|119719589|ref|YP_920084.1| - 4e-05 22.6 0.0 0.088 11.7 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_3 PF07726.6 gi|119719589|ref|YP_920084.1| - 0.00018 21.0 0.0 0.58 9.7 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|119719589|ref|YP_920084.1| - 0.00021 20.2 0.1 0.52 9.1 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|119719589|ref|YP_920084.1| - 0.00025 20.1 0.0 0.4 9.6 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|119719589|ref|YP_920084.1| - 0.00039 20.7 0.0 1.2 9.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.1 gi|119719589|ref|YP_920084.1| - 0.0021 17.6 0.0 1.7 8.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|119719589|ref|YP_920084.1| - 0.003 17.4 0.1 1.7 8.5 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase ResIII PF04851.10 gi|119719589|ref|YP_920084.1| - 0.0031 17.3 0.0 1.4 8.6 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UFD1 PF03152.9 gi|119719589|ref|YP_920084.1| - 0.0054 15.8 0.0 0.09 11.9 0.0 2.4 2 1 0 2 2 2 1 Ubiquitin fusion degradation protein UFD1 AAA_30 PF13604.1 gi|119719589|ref|YP_920084.1| - 0.0073 15.9 0.0 3.7 7.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|119719589|ref|YP_920084.1| - 0.014 14.2 0.0 5 5.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|119719589|ref|YP_920084.1| - 0.015 14.7 0.0 2 7.8 0.0 2.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|119719589|ref|YP_920084.1| - 0.017 14.7 0.1 6.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 IPT PF01745.11 gi|119719589|ref|YP_920084.1| - 0.02 14.0 0.7 1.5 7.9 0.0 2.6 3 0 0 3 3 2 0 Isopentenyl transferase AFG1_ATPase PF03969.11 gi|119719589|ref|YP_920084.1| - 0.032 13.0 0.1 14 4.3 0.0 3.3 4 0 0 4 4 4 0 AFG1-like ATPase NTPase_1 PF03266.10 gi|119719589|ref|YP_920084.1| - 0.033 13.9 8.0 5.1 6.7 0.0 4.9 4 2 2 6 6 4 0 NTPase AAA_10 PF12846.2 gi|119719589|ref|YP_920084.1| - 0.051 13.0 0.8 15 4.9 0.3 3.5 2 2 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|119719589|ref|YP_920084.1| - 0.064 13.5 0.0 22 5.2 0.0 2.7 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|119719589|ref|YP_920084.1| - 0.12 11.7 0.9 20 4.5 0.1 3.8 3 1 0 3 3 3 0 Zonular occludens toxin (Zot) AAA_29 PF13555.1 gi|119719589|ref|YP_920084.1| - 0.14 11.6 0.0 13 5.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Molydop_binding PF01568.16 gi|119719589|ref|YP_920084.1| - 0.16 11.8 0.6 0.49 10.2 0.1 2.1 3 0 0 3 3 1 0 Molydopterin dinucleotide binding domain Viral_helicase1 PF01443.13 gi|119719589|ref|YP_920084.1| - 0.23 10.9 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_21 PF13304.1 gi|119719589|ref|YP_920084.1| - 0.61 9.9 1.6 56 3.5 0.0 3.1 3 1 1 4 4 3 0 AAA domain Peptidase_M24 PF00557.19 gi|119719590|ref|YP_920085.1| - 3.2e-37 128.1 0.0 3.9e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Translin PF01997.11 gi|119719591|ref|YP_920086.1| - 1.5e-38 132.3 0.0 1.9e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 Translin family DUF3102 PF11300.3 gi|119719591|ref|YP_920086.1| - 0.12 12.3 0.2 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3102) Endonuclease_5 PF04493.9 gi|119719592|ref|YP_920087.1| - 1.2e-58 197.9 0.0 1.4e-58 197.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|119719592|ref|YP_920087.1| - 9.6e-05 21.5 0.0 0.00019 20.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF99 Adenosine_kin PF04008.9 gi|119719593|ref|YP_920088.1| - 1.6e-75 251.8 0.6 1.8e-75 251.6 0.4 1.0 1 0 0 1 1 1 1 Adenosine specific kinase PTH2 PF01981.11 gi|119719594|ref|YP_920089.1| - 1.5e-44 150.3 0.0 1.7e-44 150.2 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 SpoU_sub_bind PF08032.7 gi|119719594|ref|YP_920089.1| - 0.14 12.3 0.2 0.36 11.0 0.2 1.8 2 1 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding TruD PF01142.13 gi|119719595|ref|YP_920090.1| - 4e-81 272.5 0.0 4.7e-81 272.3 0.0 1.1 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Helicase_RecD PF05127.9 gi|119719596|ref|YP_920091.1| - 3e-56 189.8 0.0 6.9e-56 188.6 0.0 1.6 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|119719596|ref|YP_920091.1| - 8.8e-50 168.7 0.0 4e-49 166.6 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|119719596|ref|YP_920091.1| - 2e-25 88.2 0.1 1.3e-24 85.6 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|119719596|ref|YP_920091.1| - 4.6e-14 52.3 2.6 1.3e-11 44.4 0.9 2.7 3 0 0 3 3 3 2 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|119719596|ref|YP_920091.1| - 5.5e-06 26.4 0.0 2.2e-05 24.5 0.0 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|119719596|ref|YP_920091.1| - 0.00018 21.4 0.1 0.00046 20.1 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_30 PF13604.1 gi|119719596|ref|YP_920091.1| - 0.027 14.0 0.0 0.17 11.4 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|119719596|ref|YP_920091.1| - 0.045 13.8 0.0 0.38 10.8 0.0 2.4 1 1 1 2 2 2 0 AAA domain Fer4_7 PF12838.2 gi|119719597|ref|YP_920092.1| - 0.0002 21.6 2.9 0.00035 20.9 2.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119719597|ref|YP_920092.1| - 0.00039 19.8 7.1 0.11 12.1 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119719597|ref|YP_920092.1| - 0.0012 19.0 1.3 0.002 18.3 0.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719597|ref|YP_920092.1| - 0.014 15.2 2.7 0.021 14.6 1.9 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119719597|ref|YP_920092.1| - 0.1 13.3 2.2 5.6 7.7 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|119719597|ref|YP_920092.1| - 0.92 9.4 7.6 1.5 8.8 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119719597|ref|YP_920092.1| - 1.7 8.5 4.4 4.4 7.2 3.1 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|119719597|ref|YP_920092.1| - 2.1 9.1 11.1 9.4 7.0 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|119719597|ref|YP_920092.1| - 8.5 6.9 8.6 7.9 7.1 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain DUF357 PF04010.8 gi|119719598|ref|YP_920093.1| - 1.1e-21 76.2 0.0 2.7e-21 75.0 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|119719598|ref|YP_920093.1| - 2e-12 47.4 0.0 6.4e-12 45.7 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|119719598|ref|YP_920093.1| - 0.056 13.0 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 FAD synthetase TP_methylase PF00590.15 gi|119719599|ref|YP_920094.1| - 2.4e-21 76.4 0.4 2.9e-21 76.1 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TFIIB PF00382.14 gi|119719600|ref|YP_920095.1| - 1.9e-36 123.6 2.4 3.7e-19 68.2 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|119719600|ref|YP_920095.1| - 5.8e-18 63.9 0.2 1.1e-17 63.0 0.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|119719600|ref|YP_920095.1| - 0.00043 19.5 2.6 0.00083 18.6 0.1 2.8 4 0 0 4 4 4 1 Sigma-70, region 4 Ribosomal_S27e PF01667.12 gi|119719600|ref|YP_920095.1| - 0.00085 18.8 0.1 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|119719600|ref|YP_920095.1| - 0.0011 18.1 1.7 0.0031 16.6 1.2 1.8 1 1 0 1 1 1 1 zinc-ribbon domain HTH_AsnC-type PF13404.1 gi|119719600|ref|YP_920095.1| - 0.0016 17.9 2.1 0.0031 17.0 0.1 2.5 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Cyclin_C PF02984.14 gi|119719600|ref|YP_920095.1| - 0.002 18.0 0.1 0.14 12.0 0.0 2.3 2 0 0 2 2 2 1 Cyclin, C-terminal domain Cyclin_N PF00134.18 gi|119719600|ref|YP_920095.1| - 0.0027 17.2 0.0 1.2 8.7 0.0 2.2 1 1 1 2 2 2 1 Cyclin, N-terminal domain DUF2752 PF10825.3 gi|119719600|ref|YP_920095.1| - 0.0046 16.9 0.4 0.011 15.7 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2752) DZR PF12773.2 gi|119719600|ref|YP_920095.1| - 0.0089 15.8 0.3 0.019 14.7 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon Rubredoxin PF00301.15 gi|119719600|ref|YP_920095.1| - 0.009 15.8 0.3 1.7 8.5 0.0 2.3 2 0 0 2 2 2 1 Rubredoxin A2L_zn_ribbon PF08792.5 gi|119719600|ref|YP_920095.1| - 0.0099 15.3 0.4 0.017 14.5 0.3 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|119719600|ref|YP_920095.1| - 0.013 15.5 0.4 0.026 14.5 0.3 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|119719600|ref|YP_920095.1| - 0.033 14.5 0.3 0.07 13.4 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|119719600|ref|YP_920095.1| - 0.033 13.9 0.5 0.08 12.7 0.4 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Sigma70_r4_2 PF08281.7 gi|119719600|ref|YP_920095.1| - 0.047 13.1 0.5 0.14 11.6 0.3 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|119719600|ref|YP_920095.1| - 0.048 13.3 1.2 3.8 7.2 0.1 2.1 1 1 0 2 2 2 0 Putative transposase DNA-binding domain FYDLN_acid PF09538.5 gi|119719600|ref|YP_920095.1| - 0.071 13.6 0.3 0.18 12.4 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HTH_Tnp_ISL3 PF13542.1 gi|119719600|ref|YP_920095.1| - 0.084 12.0 0.2 1.4 8.2 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 zinc_ribbon_5 PF13719.1 gi|119719600|ref|YP_920095.1| - 0.087 12.4 2.0 0.66 9.6 1.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain GerE PF00196.14 gi|119719600|ref|YP_920095.1| - 0.089 12.1 0.2 0.24 10.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Zn_Tnp_IS91 PF14319.1 gi|119719600|ref|YP_920095.1| - 0.093 12.2 0.2 0.2 11.1 0.2 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-ISL3 PF14690.1 gi|119719600|ref|YP_920095.1| - 0.11 12.5 1.3 0.47 10.5 0.2 2.4 2 1 1 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|119719600|ref|YP_920095.1| - 0.14 11.8 0.7 0.33 10.6 0.5 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.1 gi|119719600|ref|YP_920095.1| - 0.15 11.8 2.0 1.5 8.5 1.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|119719600|ref|YP_920095.1| - 0.17 11.3 1.3 1.4 8.4 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|119719600|ref|YP_920095.1| - 0.22 11.2 3.6 6 6.6 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Trm112p PF03966.11 gi|119719600|ref|YP_920095.1| - 0.47 10.8 2.7 10 6.5 0.4 2.7 1 1 1 2 2 2 0 Trm112p-like protein RRN7 PF11781.3 gi|119719600|ref|YP_920095.1| - 0.98 8.9 4.0 4.2 6.9 2.6 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DNA_RNApol_7kD PF03604.8 gi|119719600|ref|YP_920095.1| - 1 8.8 5.0 9.5 5.7 0.2 2.6 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|119719600|ref|YP_920095.1| - 2.3 7.8 5.0 9.5 5.8 0.9 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Fcf1 PF04900.7 gi|119719601|ref|YP_920096.1| - 2.2e-07 30.9 0.0 1.4e-06 28.2 0.0 1.9 1 1 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|119719601|ref|YP_920096.1| - 1.6e-06 28.2 0.5 3.3e-05 24.0 0.3 2.0 1 1 0 1 1 1 1 PIN domain PIN PF01850.16 gi|119719601|ref|YP_920096.1| - 0.00012 22.4 0.6 0.00027 21.2 0.4 1.5 1 1 0 1 1 1 1 PIN domain PORR PF11955.3 gi|119719601|ref|YP_920096.1| - 0.026 13.2 0.0 0.027 13.2 0.0 1.1 1 0 0 1 1 1 0 Plant organelle RNA recognition domain cobW PF02492.14 gi|119719602|ref|YP_920097.1| - 2.5e-05 23.7 0.0 0.00016 21.1 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|119719602|ref|YP_920097.1| - 0.0035 17.0 0.0 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|119719602|ref|YP_920097.1| - 0.012 16.4 0.0 0.028 15.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|119719602|ref|YP_920097.1| - 0.012 14.6 0.0 0.023 13.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.12 gi|119719602|ref|YP_920097.1| - 0.028 13.8 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase SKI PF01202.17 gi|119719602|ref|YP_920097.1| - 0.028 14.2 0.1 4.8 7.0 0.0 3.1 2 1 1 3 3 3 0 Shikimate kinase PRK PF00485.13 gi|119719602|ref|YP_920097.1| - 0.032 13.8 0.0 0.088 12.3 0.0 1.8 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family CbiA PF01656.18 gi|119719602|ref|YP_920097.1| - 0.051 12.9 0.3 0.16 11.3 0.2 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Cpn60_TCP1 PF00118.19 gi|119719603|ref|YP_920098.1| - 1.8e-176 587.5 8.9 2.1e-176 587.3 6.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_18 PF13238.1 gi|119719604|ref|YP_920099.1| - 6e-16 58.9 0.0 1.1e-15 58.0 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|119719604|ref|YP_920099.1| - 1.3e-09 38.9 0.1 2.1e-09 38.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|119719604|ref|YP_920099.1| - 7.8e-07 29.0 0.0 1.5e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|119719604|ref|YP_920099.1| - 0.03 13.4 0.2 0.065 12.3 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin KaiC PF06745.8 gi|119719604|ref|YP_920099.1| - 0.03 13.4 0.2 0.08 12.0 0.0 1.7 2 0 0 2 2 2 0 KaiC ADK PF00406.17 gi|119719604|ref|YP_920099.1| - 0.035 13.9 0.1 0.078 12.8 0.0 1.5 2 0 0 2 2 2 0 Adenylate kinase KTI12 PF08433.5 gi|119719604|ref|YP_920099.1| - 0.049 12.8 0.3 1.4 8.0 0.1 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|119719604|ref|YP_920099.1| - 0.053 13.5 0.3 0.15 12.0 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|119719604|ref|YP_920099.1| - 0.058 13.1 0.1 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain T2SE PF00437.15 gi|119719604|ref|YP_920099.1| - 0.068 12.0 0.2 0.13 11.1 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|119719604|ref|YP_920099.1| - 0.069 12.1 0.1 0.14 11.1 0.1 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.14 gi|119719604|ref|YP_920099.1| - 0.088 12.2 0.1 5.7 6.3 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|119719604|ref|YP_920099.1| - 0.13 12.4 0.5 0.66 10.1 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA PF00004.24 gi|119719604|ref|YP_920099.1| - 0.14 12.3 0.3 0.23 11.6 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_binding PF01877.12 gi|119719605|ref|YP_920100.1| - 1.3e-25 89.7 0.0 1.5e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 RNA binding Lactamase_B_2 PF12706.2 gi|119719606|ref|YP_920101.1| - 2.8e-23 82.4 0.0 4.6e-23 81.7 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|119719606|ref|YP_920101.1| - 1.1e-06 28.4 0.1 2.5e-06 27.2 0.0 1.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|119719606|ref|YP_920101.1| - 0.0036 16.7 0.0 0.0057 16.0 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Ribosomal_L12 PF00542.14 gi|119719607|ref|YP_920102.1| - 0.25 11.3 2.6 0.25 11.3 0.9 1.6 1 1 1 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain DUF373 PF04123.8 gi|119719609|ref|YP_920104.1| - 3.9e-99 331.9 7.8 4.6e-99 331.6 5.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF4043 PF13252.1 gi|119719609|ref|YP_920104.1| - 0.015 14.3 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4043) RFX5_DNA_bdg PF14621.1 gi|119719609|ref|YP_920104.1| - 0.036 13.6 0.0 0.049 13.2 0.0 1.1 1 0 0 1 1 1 0 RFX5 DNA-binding domain UPF0020 PF01170.13 gi|119719610|ref|YP_920105.1| - 2.1e-19 69.7 0.0 3.6e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|119719610|ref|YP_920105.1| - 4.2e-15 55.7 0.1 6.9e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|119719610|ref|YP_920105.1| - 1.3e-06 28.0 0.0 2.2e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|119719610|ref|YP_920105.1| - 1.7e-06 27.5 0.0 3e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|119719610|ref|YP_920105.1| - 0.00011 21.7 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|119719610|ref|YP_920105.1| - 0.00063 20.1 0.0 0.0016 18.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|119719610|ref|YP_920105.1| - 0.018 14.5 0.0 0.056 12.9 0.0 1.7 2 0 0 2 2 2 0 DNA methylase PRC PF05239.11 gi|119719611|ref|YP_920106.1| - 1.7e-06 27.8 1.3 3.7e-06 26.6 0.9 1.5 1 0 0 1 1 1 1 PRC-barrel domain SHOCT PF09851.4 gi|119719611|ref|YP_920106.1| - 0.0011 18.4 0.1 0.0092 15.4 0.1 2.5 2 1 1 3 3 3 1 Short C-terminal domain GvpG PF05120.7 gi|119719611|ref|YP_920106.1| - 0.0051 16.5 0.9 0.018 14.8 0.1 2.0 1 1 1 2 2 2 1 Gas vesicle protein G E2F_TDP PF02319.15 gi|119719611|ref|YP_920106.1| - 0.028 13.9 0.3 0.096 12.2 0.1 2.0 2 0 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain PolyA_pol_RNAbd PF12627.2 gi|119719611|ref|YP_920106.1| - 0.065 12.8 0.0 0.23 11.0 0.0 1.9 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A DUF4258 PF14076.1 gi|119719611|ref|YP_920106.1| - 0.07 13.1 0.3 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) DUF1512 PF07431.7 gi|119719612|ref|YP_920107.1| - 5.4e-101 337.8 5.3 6.1e-101 337.6 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Radical_SAM PF04055.16 gi|119719613|ref|YP_920108.1| - 1.7e-18 67.3 0.5 3e-17 63.3 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|119719613|ref|YP_920108.1| - 4.6e-08 33.1 0.2 2e-07 31.0 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|119719613|ref|YP_920108.1| - 1.3e-07 31.8 0.1 4.9e-07 29.9 0.0 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain TGT_C2 PF14810.1 gi|119719616|ref|YP_920111.1| - 6.3e-13 48.3 0.2 2.4e-12 46.5 0.1 1.9 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|119719616|ref|YP_920111.1| - 5.9e-09 35.5 0.3 7.4e-09 35.2 0.2 1.2 1 0 0 1 1 1 1 PUA domain TruB-C_2 PF09157.6 gi|119719616|ref|YP_920111.1| - 0.02 14.7 0.0 0.11 12.4 0.0 2.1 1 1 1 2 2 2 0 Pseudouridine synthase II TruB, C-terminal HTH_3 PF01381.17 gi|119719617|ref|YP_920112.1| - 5.2e-13 48.6 0.4 8e-13 48.0 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|119719617|ref|YP_920112.1| - 1.4e-09 37.8 0.1 2e-09 37.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|119719617|ref|YP_920112.1| - 1.9e-09 37.5 0.0 3.1e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|119719617|ref|YP_920112.1| - 0.0025 17.4 0.1 0.0048 16.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MMR_HSR1 PF01926.18 gi|119719618|ref|YP_920113.1| - 6.9e-13 48.5 0.0 1.7e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|119719618|ref|YP_920113.1| - 1.3e-12 47.6 0.0 2.9e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|119719618|ref|YP_920113.1| - 2.9e-07 29.8 0.0 7.5e-07 28.5 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|119719618|ref|YP_920113.1| - 7.3e-06 25.5 0.1 0.0014 18.0 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.17 gi|119719618|ref|YP_920113.1| - 0.00011 21.6 0.0 0.00037 19.9 0.0 1.9 1 1 0 1 1 1 1 Ras family ABC_tran PF00005.22 gi|119719618|ref|YP_920113.1| - 0.00022 21.5 0.5 0.0009 19.5 0.0 2.1 2 0 0 2 2 2 1 ABC transporter PduV-EutP PF10662.4 gi|119719618|ref|YP_920113.1| - 0.0005 19.5 0.1 1.4 8.3 0.0 2.6 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|119719618|ref|YP_920113.1| - 0.008 15.6 4.5 0.16 11.4 0.5 3.3 3 1 0 4 4 4 1 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|119719618|ref|YP_920113.1| - 0.0089 15.2 0.0 0.018 14.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|119719618|ref|YP_920113.1| - 0.038 13.5 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|119719618|ref|YP_920113.1| - 0.061 14.1 3.4 0.21 12.4 0.1 2.8 2 2 0 2 2 2 0 AAA domain Arf PF00025.16 gi|119719618|ref|YP_920113.1| - 0.1 11.8 3.4 0.81 8.9 0.0 3.1 2 2 0 3 3 3 0 ADP-ribosylation factor family Miro PF08477.8 gi|119719618|ref|YP_920113.1| - 0.1 13.1 0.0 0.6 10.6 0.0 2.3 1 1 0 1 1 1 0 Miro-like protein NB-ARC PF00931.17 gi|119719618|ref|YP_920113.1| - 0.16 10.7 0.3 2.8 6.7 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_22 PF13401.1 gi|119719618|ref|YP_920113.1| - 0.18 11.9 1.4 6.2 6.9 0.9 3.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|119719618|ref|YP_920113.1| - 0.23 11.7 8.2 0.28 11.4 0.6 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|119719618|ref|YP_920113.1| - 0.25 11.6 2.5 0.3 11.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain DUF3618 PF12277.3 gi|119719618|ref|YP_920113.1| - 0.6 10.1 6.0 0.42 10.6 0.7 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3618) Trm56 PF01994.11 gi|119719619|ref|YP_920114.1| - 4.8e-51 171.5 0.0 6.1e-51 171.2 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.12 gi|119719620|ref|YP_920115.1| - 7.1e-39 131.5 1.1 9.7e-39 131.1 0.8 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|119719620|ref|YP_920115.1| - 1.7e-11 43.1 3.6 2.8e-11 42.5 2.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|119719620|ref|YP_920115.1| - 0.00074 19.2 0.8 0.0012 18.6 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon HTH_9 PF08221.6 gi|119719620|ref|YP_920115.1| - 0.00075 19.3 0.0 0.0031 17.3 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF1610 PF07754.6 gi|119719620|ref|YP_920115.1| - 0.00086 19.3 6.3 0.036 14.1 0.3 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) IBR PF01485.16 gi|119719620|ref|YP_920115.1| - 0.0012 18.6 0.3 0.0019 17.9 0.2 1.3 1 0 0 1 1 1 1 IBR domain Rrf2 PF02082.15 gi|119719620|ref|YP_920115.1| - 0.0028 17.7 0.0 0.0073 16.4 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HypA PF01155.14 gi|119719620|ref|YP_920115.1| - 0.0038 16.9 0.0 0.0053 16.4 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|119719620|ref|YP_920115.1| - 0.0039 17.0 0.4 1.4 8.8 0.0 2.4 2 0 0 2 2 2 1 Rubredoxin zinc_ribbon_5 PF13719.1 gi|119719620|ref|YP_920115.1| - 0.004 16.6 1.8 0.012 15.2 1.2 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719620|ref|YP_920115.1| - 0.0046 16.6 2.0 0.016 14.8 1.4 1.9 1 1 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|119719620|ref|YP_920115.1| - 0.007 16.1 0.1 0.014 15.1 0.1 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|119719620|ref|YP_920115.1| - 0.0079 16.1 2.2 5 7.2 0.1 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|119719620|ref|YP_920115.1| - 0.017 14.3 2.5 0.23 10.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HTH_5 PF01022.15 gi|119719620|ref|YP_920115.1| - 0.022 14.4 0.2 0.068 12.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family zf-HIT PF04438.11 gi|119719620|ref|YP_920115.1| - 0.022 14.3 4.4 0.21 11.2 0.8 2.2 2 0 0 2 2 2 0 HIT zinc finger Prok-RING_1 PF14446.1 gi|119719620|ref|YP_920115.1| - 0.023 14.4 0.7 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|119719620|ref|YP_920115.1| - 0.023 14.6 3.0 0.52 10.3 2.2 2.3 1 1 2 3 3 3 0 Zinc ribbon domain Cys_rich_CPCC PF14206.1 gi|119719620|ref|YP_920115.1| - 0.024 14.2 1.3 0.04 13.4 0.9 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC FYVE PF01363.16 gi|119719620|ref|YP_920115.1| - 0.025 14.4 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-CHY PF05495.7 gi|119719620|ref|YP_920115.1| - 0.029 14.5 0.8 0.047 13.8 0.6 1.3 1 0 0 1 1 1 0 CHY zinc finger OrfB_Zn_ribbon PF07282.6 gi|119719620|ref|YP_920115.1| - 0.031 13.9 1.6 2.6 7.7 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|119719620|ref|YP_920115.1| - 0.038 13.4 2.8 2 7.9 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|119719620|ref|YP_920115.1| - 0.045 13.2 3.2 0.18 11.3 2.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF1493 PF07377.7 gi|119719620|ref|YP_920115.1| - 0.051 13.6 0.1 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1493) Sigma70_r3 PF04539.11 gi|119719620|ref|YP_920115.1| - 0.051 13.4 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 Ribosomal_L37ae PF01780.14 gi|119719620|ref|YP_920115.1| - 0.063 13.1 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Ribosomal L37ae protein family Ribosomal_S27e PF01667.12 gi|119719620|ref|YP_920115.1| - 0.063 12.8 0.3 0.11 12.0 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 MarR_2 PF12802.2 gi|119719620|ref|YP_920115.1| - 0.072 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family zf-C2H2 PF00096.21 gi|119719620|ref|YP_920115.1| - 0.075 13.4 3.2 3 8.3 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-IS66 PF13005.2 gi|119719620|ref|YP_920115.1| - 0.095 12.6 0.3 14 5.7 0.0 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PolC_DP2 PF03833.8 gi|119719620|ref|YP_920115.1| - 0.097 10.3 0.1 0.13 9.9 0.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 C1_2 PF03107.11 gi|119719620|ref|YP_920115.1| - 0.1 12.7 1.3 4.3 7.5 0.1 2.2 2 0 0 2 2 2 0 C1 domain zf-FPG_IleRS PF06827.9 gi|119719620|ref|YP_920115.1| - 0.15 11.7 3.0 0.41 10.3 2.2 1.7 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS ParA PF10609.4 gi|119719620|ref|YP_920115.1| - 0.16 11.9 0.6 1.6 8.6 0.0 2.5 2 1 1 3 3 3 0 ParA/MinD ATPase like GFA PF04828.9 gi|119719620|ref|YP_920115.1| - 0.19 11.6 1.0 0.67 9.9 0.7 1.9 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-H2C2_2 PF13465.1 gi|119719620|ref|YP_920115.1| - 0.22 11.8 3.2 4.5 7.7 0.1 2.5 3 0 0 3 3 2 0 Zinc-finger double domain FeoC PF09012.5 gi|119719620|ref|YP_920115.1| - 0.23 11.2 0.0 0.23 11.2 0.0 2.4 2 1 1 3 3 3 0 FeoC like transcriptional regulator CpXC PF14353.1 gi|119719620|ref|YP_920115.1| - 0.27 11.2 3.1 3.2 7.7 0.1 2.9 2 1 1 3 3 3 0 CpXC protein DUF2296 PF10058.4 gi|119719620|ref|YP_920115.1| - 0.29 10.9 3.0 5.7 6.7 2.1 2.3 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) PhnA_Zn_Ribbon PF08274.7 gi|119719620|ref|YP_920115.1| - 0.64 9.8 3.0 1.7 8.5 2.0 1.6 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Rep_fac-A_C PF08646.5 gi|119719620|ref|YP_920115.1| - 0.71 9.5 3.8 4 7.1 1.4 2.4 2 1 0 2 2 2 0 Replication factor-A C terminal domain TFIIS_C PF01096.13 gi|119719620|ref|YP_920115.1| - 1.3 8.7 5.9 5 6.8 0.4 2.5 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.7 gi|119719620|ref|YP_920115.1| - 1.6 8.1 6.4 0.78 9.1 0.8 2.2 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain ADK_lid PF05191.9 gi|119719620|ref|YP_920115.1| - 5.4 6.7 7.3 15 5.3 3.3 2.7 2 1 0 2 2 2 0 Adenylate kinase, active site lid Sigma70_r4_2 PF08281.7 gi|119719621|ref|YP_920116.1| - 8.7e-09 34.7 0.5 2.3e-08 33.3 0.2 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|119719621|ref|YP_920116.1| - 6.1e-07 28.8 0.0 1.8e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|119719621|ref|YP_920116.1| - 1.4e-05 24.5 0.1 6.7e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|119719621|ref|YP_920116.1| - 1.8e-05 23.9 0.1 4.4e-05 22.6 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|119719621|ref|YP_920116.1| - 2e-05 24.3 0.3 6e-05 22.7 0.1 1.8 2 0 0 2 2 2 1 ECF sigma factor HTH_28 PF13518.1 gi|119719621|ref|YP_920116.1| - 2.4e-05 24.2 0.1 8.8e-05 22.4 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|119719621|ref|YP_920116.1| - 4.7e-05 22.9 0.2 0.00022 20.8 0.0 2.1 2 0 0 2 2 2 1 HTH domain GerE PF00196.14 gi|119719621|ref|YP_920116.1| - 5.2e-05 22.4 0.0 0.00015 21.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TrmB PF01978.14 gi|119719621|ref|YP_920116.1| - 8.1e-05 22.2 3.0 0.1 12.3 0.1 3.2 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB DUF2089 PF09862.4 gi|119719621|ref|YP_920116.1| - 0.00026 20.7 0.3 0.011 15.5 0.1 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF2089) HTH_8 PF02954.14 gi|119719621|ref|YP_920116.1| - 0.0008 18.8 0.0 0.0057 16.1 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_30 PF13556.1 gi|119719621|ref|YP_920116.1| - 0.0012 18.3 0.2 0.014 14.9 0.0 2.2 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.1 gi|119719621|ref|YP_920116.1| - 0.0017 18.5 0.1 0.0064 16.6 0.1 2.0 1 1 1 2 2 2 1 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|119719621|ref|YP_920116.1| - 0.0032 16.6 0.1 0.011 14.9 0.0 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_17 PF12728.2 gi|119719621|ref|YP_920116.1| - 0.0047 17.1 0.1 0.014 15.6 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain MutS_III PF05192.13 gi|119719621|ref|YP_920116.1| - 0.0049 16.6 0.2 0.0067 16.2 0.1 1.1 1 0 0 1 1 1 1 MutS domain III HTH_22 PF13309.1 gi|119719621|ref|YP_920116.1| - 0.0054 16.4 0.5 0.019 14.7 0.0 2.2 2 1 0 2 2 2 1 HTH domain HTH_6 PF01418.12 gi|119719621|ref|YP_920116.1| - 0.0071 16.0 0.5 0.07 12.8 0.1 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain, rpiR family UPF0122 PF04297.9 gi|119719621|ref|YP_920116.1| - 0.0088 16.0 1.1 0.015 15.3 0.0 1.8 3 0 0 3 3 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_Tnp_1 PF01527.15 gi|119719621|ref|YP_920116.1| - 0.0093 15.8 0.1 0.056 13.4 0.0 2.3 1 1 0 1 1 1 1 Transposase HTH_40 PF14493.1 gi|119719621|ref|YP_920116.1| - 0.018 15.2 0.1 0.078 13.2 0.0 2.0 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|119719621|ref|YP_920116.1| - 0.019 14.6 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Transposase HTH_7 PF02796.10 gi|119719621|ref|YP_920116.1| - 0.021 14.6 0.6 0.074 12.9 0.1 2.2 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_36 PF13730.1 gi|119719621|ref|YP_920116.1| - 0.021 14.9 0.1 0.55 10.3 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|119719621|ref|YP_920116.1| - 0.03 13.8 0.1 0.091 12.3 0.0 1.9 2 0 0 2 2 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_Tc3_1 PF11427.3 gi|119719621|ref|YP_920116.1| - 0.039 13.5 0.2 0.7 9.5 0.0 2.3 2 0 0 2 2 2 0 Tc3 transposase HTH_10 PF04967.7 gi|119719621|ref|YP_920116.1| - 0.098 12.2 0.2 2.2 7.9 0.1 3.1 1 1 1 2 2 2 0 HTH DNA binding domain DUF746 PF05344.6 gi|119719621|ref|YP_920116.1| - 0.1 12.1 0.0 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_3 PF01381.17 gi|119719621|ref|YP_920116.1| - 0.14 12.0 1.5 2.8 7.8 0.1 2.7 3 0 0 3 3 2 0 Helix-turn-helix CbiQ PF02361.11 gi|119719622|ref|YP_920117.1| - 7.1e-29 100.9 12.8 7.1e-29 100.9 8.9 1.5 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|119719623|ref|YP_920118.1| - 7e-31 107.3 0.0 1.5e-30 106.2 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|119719623|ref|YP_920118.1| - 5.3e-13 49.5 0.1 2.1e-07 31.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119719623|ref|YP_920118.1| - 1e-06 28.1 0.0 1.7e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|119719623|ref|YP_920118.1| - 0.00026 21.3 0.0 0.0003 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119719623|ref|YP_920118.1| - 0.00053 19.4 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|119719623|ref|YP_920118.1| - 0.00085 18.9 0.1 0.29 10.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|119719623|ref|YP_920118.1| - 0.0014 18.7 0.3 0.0065 16.6 0.1 2.2 2 1 0 2 2 1 1 AAA domain NTPase_1 PF03266.10 gi|119719623|ref|YP_920118.1| - 0.0044 16.7 1.9 0.023 14.4 0.4 2.1 2 0 0 2 2 2 1 NTPase AAA_18 PF13238.1 gi|119719623|ref|YP_920118.1| - 0.0083 16.4 0.0 0.04 14.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119719623|ref|YP_920118.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.12 gi|119719623|ref|YP_920118.1| - 0.013 15.1 0.5 0.31 10.5 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DLIC PF05783.6 gi|119719623|ref|YP_920118.1| - 0.013 14.2 0.0 0.018 13.7 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) DUF258 PF03193.11 gi|119719623|ref|YP_920118.1| - 0.013 14.6 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|119719623|ref|YP_920118.1| - 0.013 15.2 0.1 0.022 14.4 0.1 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_15 PF13175.1 gi|119719623|ref|YP_920118.1| - 0.015 14.3 0.0 0.1 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|119719623|ref|YP_920118.1| - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|119719623|ref|YP_920118.1| - 0.027 14.9 0.1 0.074 13.5 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein UPF0079 PF02367.12 gi|119719623|ref|YP_920118.1| - 0.031 13.9 0.1 0.068 12.7 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PRK PF00485.13 gi|119719623|ref|YP_920118.1| - 0.055 13.0 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|119719623|ref|YP_920118.1| - 0.061 12.9 0.1 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 NACHT domain KaiC PF06745.8 gi|119719623|ref|YP_920118.1| - 0.072 12.1 0.6 0.21 10.6 0.4 1.9 1 1 0 1 1 1 0 KaiC Zeta_toxin PF06414.7 gi|119719623|ref|YP_920118.1| - 0.075 12.1 0.2 0.15 11.1 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin ATP-synt_ab PF00006.20 gi|119719623|ref|YP_920118.1| - 0.076 12.5 0.1 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.16 gi|119719623|ref|YP_920118.1| - 0.084 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|119719623|ref|YP_920118.1| - 0.09 12.2 0.1 0.21 11.0 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain cobW PF02492.14 gi|119719623|ref|YP_920118.1| - 0.12 11.8 0.3 0.32 10.4 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|119719623|ref|YP_920118.1| - 0.12 12.2 0.1 0.2 11.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|119719623|ref|YP_920118.1| - 0.16 9.2 0.1 0.21 8.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MobB PF03205.9 gi|119719623|ref|YP_920118.1| - 0.17 11.5 1.0 0.25 11.0 0.2 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|119719623|ref|YP_920118.1| - 0.34 9.3 0.9 0.89 7.9 0.1 1.8 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|119719624|ref|YP_920119.1| - 1.5e-26 93.2 0.0 2.2e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119719624|ref|YP_920119.1| - 8.8e-10 39.0 0.9 3.8e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119719624|ref|YP_920119.1| - 0.00079 18.7 0.0 0.072 12.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|119719624|ref|YP_920119.1| - 0.00097 19.1 0.2 0.0038 17.2 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|119719624|ref|YP_920119.1| - 0.0017 18.2 0.1 0.0036 17.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|119719624|ref|YP_920119.1| - 0.0026 16.9 0.0 0.0048 16.0 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|119719624|ref|YP_920119.1| - 0.0058 17.4 0.1 0.017 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|119719624|ref|YP_920119.1| - 0.0066 16.1 0.0 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|119719624|ref|YP_920119.1| - 0.0087 15.5 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|119719624|ref|YP_920119.1| - 0.013 14.9 0.1 0.6 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|119719624|ref|YP_920119.1| - 0.016 15.3 0.1 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|119719624|ref|YP_920119.1| - 0.018 14.4 0.1 0.13 11.6 0.0 2.1 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|119719624|ref|YP_920119.1| - 0.023 14.6 0.1 0.22 11.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|119719624|ref|YP_920119.1| - 0.026 14.8 0.1 0.04 14.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|119719624|ref|YP_920119.1| - 0.029 14.5 0.2 0.11 12.7 0.1 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|119719624|ref|YP_920119.1| - 0.034 12.8 0.0 0.049 12.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|119719624|ref|YP_920119.1| - 0.052 12.7 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|119719624|ref|YP_920119.1| - 0.073 12.7 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.12 gi|119719624|ref|YP_920119.1| - 0.076 12.4 0.0 0.85 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|119719624|ref|YP_920119.1| - 0.089 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|119719624|ref|YP_920119.1| - 0.18 12.1 0.5 0.36 11.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain MMR_HSR1_C PF08438.5 gi|119719625|ref|YP_920120.1| - 7.4e-38 129.1 0.0 1.3e-37 128.3 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|119719625|ref|YP_920120.1| - 1.6e-15 57.0 0.0 5.6e-15 55.3 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|119719625|ref|YP_920120.1| - 3.6e-09 36.3 0.0 6.8e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|119719625|ref|YP_920120.1| - 3.7e-05 23.0 0.7 0.0026 17.0 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B GFO_IDH_MocA PF01408.17 gi|119719627|ref|YP_920122.1| - 1.3e-23 83.8 0.0 5.4e-23 81.7 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|119719627|ref|YP_920122.1| - 6.2e-05 22.7 0.0 0.00017 21.3 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|119719627|ref|YP_920122.1| - 0.0003 21.1 0.1 0.00051 20.4 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|119719627|ref|YP_920122.1| - 0.00046 20.1 0.1 0.00072 19.5 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain ThiF PF00899.16 gi|119719627|ref|YP_920122.1| - 0.00089 19.0 0.1 0.0017 18.2 0.1 1.5 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.15 gi|119719627|ref|YP_920122.1| - 0.0087 16.1 0.1 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.19 gi|119719627|ref|YP_920122.1| - 0.029 14.6 0.2 0.068 13.4 0.1 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|119719627|ref|YP_920122.1| - 0.12 12.3 0.1 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|119719628|ref|YP_920123.1| - 1.4e-19 70.3 0.0 2.5e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|119719628|ref|YP_920123.1| - 2.5e-12 46.3 0.6 3.9e-05 22.7 0.1 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|119719628|ref|YP_920123.1| - 2.4e-08 33.3 0.1 5.3e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|119719628|ref|YP_920123.1| - 3.2e-08 32.4 1.3 3.8e-07 28.9 0.3 2.8 2 1 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|119719628|ref|YP_920123.1| - 4.4e-08 33.4 0.1 8.8e-08 32.4 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|119719628|ref|YP_920123.1| - 5.6e-08 31.8 0.0 0.00017 20.3 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|119719628|ref|YP_920123.1| - 2.2e-07 30.9 0.3 3.8e-06 26.9 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|119719628|ref|YP_920123.1| - 2.4e-06 27.4 0.1 8.4e-06 25.7 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|119719628|ref|YP_920123.1| - 4e-06 26.0 0.1 1.1e-05 24.7 0.1 1.7 1 1 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|119719628|ref|YP_920123.1| - 2.4e-05 23.3 0.9 0.00019 20.4 0.2 2.2 1 1 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|119719628|ref|YP_920123.1| - 0.00015 22.0 2.5 0.00098 19.4 0.1 2.8 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|119719628|ref|YP_920123.1| - 0.0016 18.1 1.0 0.0028 17.3 0.2 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|119719628|ref|YP_920123.1| - 0.015 14.2 0.1 0.022 13.6 0.1 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_Gly3P_dh_N PF01210.18 gi|119719628|ref|YP_920123.1| - 0.067 12.9 0.5 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.1 gi|119719628|ref|YP_920123.1| - 0.086 12.6 0.1 0.26 11.0 0.0 1.8 1 1 0 1 1 1 0 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|119719628|ref|YP_920123.1| - 0.12 11.4 0.9 0.22 10.5 0.6 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|119719628|ref|YP_920123.1| - 0.13 11.3 0.0 0.23 10.4 0.0 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase HxlR PF01638.12 gi|119719629|ref|YP_920124.1| - 1.5e-06 27.7 0.1 2.3e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|119719629|ref|YP_920124.1| - 2.1e-05 24.0 0.2 4.1e-05 23.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|119719629|ref|YP_920124.1| - 3.6e-05 23.9 0.5 6.8e-05 23.1 0.1 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|119719629|ref|YP_920124.1| - 7e-05 22.1 0.6 0.0004 19.7 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|119719629|ref|YP_920124.1| - 7.1e-05 22.3 1.3 0.00014 21.4 0.2 1.9 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|119719629|ref|YP_920124.1| - 0.00018 21.2 0.0 0.00076 19.2 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix MarR PF01047.17 gi|119719629|ref|YP_920124.1| - 0.00032 20.3 0.3 0.00099 18.7 0.1 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|119719629|ref|YP_920124.1| - 0.00055 19.5 1.5 0.001 18.7 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|119719629|ref|YP_920124.1| - 0.00095 18.9 1.8 0.0021 17.8 1.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|119719629|ref|YP_920124.1| - 0.0035 17.0 0.1 0.0073 16.0 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|119719629|ref|YP_920124.1| - 0.0066 16.4 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain AphA_like PF14557.1 gi|119719629|ref|YP_920124.1| - 0.0097 15.4 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator Rrf2 PF02082.15 gi|119719629|ref|YP_920124.1| - 0.013 15.6 0.6 0.068 13.2 0.2 2.1 1 1 1 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.5 gi|119719629|ref|YP_920124.1| - 0.017 14.6 1.3 0.098 12.2 0.7 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|119719629|ref|YP_920124.1| - 0.031 13.9 0.2 0.069 12.8 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|119719629|ref|YP_920124.1| - 0.063 13.4 0.1 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Rio2_N PF09202.6 gi|119719629|ref|YP_920124.1| - 0.069 13.2 0.2 1 9.4 0.0 2.4 2 1 0 2 2 2 0 Rio2, N-terminal Penicillinase_R PF03965.11 gi|119719629|ref|YP_920124.1| - 0.1 12.6 0.4 2.4 8.2 0.0 2.2 2 0 0 2 2 2 0 Penicillinase repressor Replic_Relax PF13814.1 gi|119719629|ref|YP_920124.1| - 0.13 12.0 0.1 0.17 11.7 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation AAA_10 PF12846.2 gi|119719630|ref|YP_920125.1| - 3.5e-13 49.6 0.0 3.3e-06 26.7 0.0 2.5 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|119719630|ref|YP_920125.1| - 1.6e-09 37.9 0.0 2.5e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|119719630|ref|YP_920125.1| - 6.7e-07 28.9 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|119719630|ref|YP_920125.1| - 0.00013 20.7 0.0 0.00019 20.1 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|119719630|ref|YP_920125.1| - 0.0002 21.4 0.0 0.005 16.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|119719630|ref|YP_920125.1| - 0.0028 17.6 0.0 0.17 11.8 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|119719630|ref|YP_920125.1| - 0.0042 17.9 0.4 0.041 14.6 0.2 2.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|119719630|ref|YP_920125.1| - 0.0065 16.1 0.3 0.085 12.5 0.1 2.2 2 0 0 2 2 2 1 NACHT domain Arch_ATPase PF01637.13 gi|119719630|ref|YP_920125.1| - 0.015 15.0 0.0 0.025 14.2 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|119719630|ref|YP_920125.1| - 0.015 15.6 0.0 0.15 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|119719630|ref|YP_920125.1| - 0.015 14.7 0.0 0.26 10.7 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_28 PF13521.1 gi|119719630|ref|YP_920125.1| - 0.019 14.9 0.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF853 PF05872.7 gi|119719630|ref|YP_920125.1| - 0.021 13.2 0.0 0.14 10.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|119719630|ref|YP_920125.1| - 0.064 13.5 0.1 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|119719630|ref|YP_920125.1| - 0.1 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2984 PF11203.3 gi|119719631|ref|YP_920126.1| - 0.0084 16.1 0.5 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2984) PalH PF08733.5 gi|119719634|ref|YP_920129.1| - 0.22 10.3 4.6 3.4 6.3 0.1 2.0 2 0 0 2 2 2 0 PalH/RIM21 Phage_holin_1 PF04531.8 gi|119719634|ref|YP_920129.1| - 2.6 8.1 4.8 22 5.2 0.4 2.4 2 1 0 2 2 2 0 Bacteriophage holin AAA_31 PF13614.1 gi|119719635|ref|YP_920130.1| - 2.6e-12 46.9 0.0 4e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|119719635|ref|YP_920130.1| - 2.2e-09 37.0 0.0 3.1e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|119719635|ref|YP_920130.1| - 0.00013 21.1 0.0 0.0022 17.0 0.0 2.4 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|119719635|ref|YP_920130.1| - 0.0059 15.6 1.2 0.016 14.2 0.8 1.7 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|119719635|ref|YP_920130.1| - 0.032 13.4 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|119719635|ref|YP_920130.1| - 0.071 12.4 0.2 1 8.6 0.1 2.1 2 0 0 2 2 2 0 YhjQ protein LXG PF04740.7 gi|119719636|ref|YP_920131.1| - 0.017 14.9 0.0 0.021 14.6 0.0 1.0 1 0 0 1 1 1 0 LXG domain of WXG superfamily Lge1 PF11488.3 gi|119719636|ref|YP_920131.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 PspB PF06667.7 gi|119719636|ref|YP_920131.1| - 0.14 12.1 0.5 0.23 11.3 0.3 1.4 1 0 0 1 1 1 0 Phage shock protein B DUF4140 PF13600.1 gi|119719636|ref|YP_920131.1| - 0.34 11.3 3.9 0.96 9.9 2.7 1.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) T2SE PF00437.15 gi|119719637|ref|YP_920132.1| - 3.3e-17 62.2 0.0 9.1e-17 60.8 0.0 1.7 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|119719637|ref|YP_920132.1| - 2.5e-06 27.1 0.5 8.9e-06 25.3 0.0 2.1 2 1 1 3 3 2 1 Part of AAA domain AAA_25 PF13481.1 gi|119719637|ref|YP_920132.1| - 1.4e-05 24.5 0.1 3.2e-05 23.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|119719637|ref|YP_920132.1| - 3.3e-05 24.6 0.0 0.00011 23.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|119719637|ref|YP_920132.1| - 3.7e-05 23.7 0.0 8.1e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|119719637|ref|YP_920132.1| - 0.00013 22.3 0.0 0.00022 21.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|119719637|ref|YP_920132.1| - 0.00052 20.0 0.0 0.00087 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|119719637|ref|YP_920132.1| - 0.0016 18.2 0.0 0.0028 17.3 0.0 1.5 1 0 0 1 1 1 1 NTPase cobW PF02492.14 gi|119719637|ref|YP_920132.1| - 0.0017 17.8 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|119719637|ref|YP_920132.1| - 0.0019 17.7 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|119719637|ref|YP_920132.1| - 0.002 17.8 0.0 0.0035 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|119719637|ref|YP_920132.1| - 0.0033 16.9 0.1 0.0067 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|119719637|ref|YP_920132.1| - 0.0038 16.9 0.0 0.007 16.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|119719637|ref|YP_920132.1| - 0.0039 17.2 0.0 0.099 12.6 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|119719637|ref|YP_920132.1| - 0.0052 15.8 0.0 0.009 15.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.24 gi|119719637|ref|YP_920132.1| - 0.0069 16.5 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|119719637|ref|YP_920132.1| - 0.007 15.9 0.0 0.0088 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|119719637|ref|YP_920132.1| - 0.0072 16.4 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|119719637|ref|YP_920132.1| - 0.0089 15.0 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.1 gi|119719637|ref|YP_920132.1| - 0.0097 16.2 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|119719637|ref|YP_920132.1| - 0.012 15.5 0.0 0.028 14.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|119719637|ref|YP_920132.1| - 0.012 15.9 0.0 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|119719637|ref|YP_920132.1| - 0.013 14.9 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family ArgK PF03308.11 gi|119719637|ref|YP_920132.1| - 0.015 14.0 0.0 0.025 13.3 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_24 PF13479.1 gi|119719637|ref|YP_920132.1| - 0.032 13.8 0.2 0.049 13.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|119719637|ref|YP_920132.1| - 0.038 13.2 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|119719637|ref|YP_920132.1| - 0.038 13.8 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|119719637|ref|YP_920132.1| - 0.053 13.6 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_21 PF13304.1 gi|119719637|ref|YP_920132.1| - 0.054 13.4 0.0 0.11 12.4 0.0 1.5 2 0 0 2 2 1 0 AAA domain KAP_NTPase PF07693.9 gi|119719637|ref|YP_920132.1| - 0.054 12.4 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.18 gi|119719637|ref|YP_920132.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|119719637|ref|YP_920132.1| - 0.079 12.6 0.2 0.22 11.2 0.2 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B CPT PF07931.7 gi|119719637|ref|YP_920132.1| - 0.11 12.0 0.0 1.4 8.5 0.0 2.1 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein SMC_N PF02463.14 gi|119719637|ref|YP_920132.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Viral_helicase1 PF01443.13 gi|119719637|ref|YP_920132.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|119719637|ref|YP_920132.1| - 0.16 11.3 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DAP3 PF10236.4 gi|119719637|ref|YP_920132.1| - 0.18 10.6 0.0 0.33 9.8 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Rad17 PF03215.10 gi|119719637|ref|YP_920132.1| - 0.24 10.0 0.0 0.36 9.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Helicase_C_2 PF13307.1 gi|119719638|ref|YP_920133.1| - 1.5e-05 25.0 0.0 0.00014 21.8 0.0 2.2 1 1 0 1 1 1 1 Helicase C-terminal domain Transposase_22 PF02994.9 gi|119719640|ref|YP_920135.1| - 0.00042 18.9 3.1 0.00047 18.7 2.1 1.1 1 0 0 1 1 1 1 L1 transposable element Bacillus_HBL PF05791.6 gi|119719640|ref|YP_920135.1| - 0.042 13.2 1.6 0.33 10.2 0.8 2.1 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) bZIP_2 PF07716.10 gi|119719640|ref|YP_920135.1| - 0.056 13.2 2.4 0.31 10.9 0.1 2.4 2 0 0 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|119719640|ref|YP_920135.1| - 0.12 11.3 3.8 0.16 10.9 2.6 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4515 PF14988.1 gi|119719640|ref|YP_920135.1| - 0.13 11.9 5.6 0.18 11.4 3.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) FlaC_arch PF05377.6 gi|119719640|ref|YP_920135.1| - 0.16 11.8 4.0 3.5 7.6 0.2 2.8 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.2 gi|119719640|ref|YP_920135.1| - 0.24 11.2 10.7 1 9.1 6.5 2.1 1 1 1 2 2 2 0 Tropomyosin like IncA PF04156.9 gi|119719640|ref|YP_920135.1| - 0.33 10.5 9.7 0.37 10.3 6.4 1.4 1 1 0 1 1 1 0 IncA protein GAS PF13851.1 gi|119719640|ref|YP_920135.1| - 0.36 9.9 8.4 2.5 7.2 3.8 2.0 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding DMPK_coil PF08826.5 gi|119719640|ref|YP_920135.1| - 0.43 10.5 8.8 1.2 9.0 2.0 2.6 1 1 1 2 2 2 0 DMPK coiled coil domain like HALZ PF02183.13 gi|119719640|ref|YP_920135.1| - 0.85 9.3 8.0 1.8 8.3 0.1 3.5 4 0 0 4 4 4 0 Homeobox associated leucine zipper DUF904 PF06005.7 gi|119719640|ref|YP_920135.1| - 1 9.6 9.2 3.6 7.9 6.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF904) DUF972 PF06156.8 gi|119719640|ref|YP_920135.1| - 2.3 8.5 4.6 11 6.3 3.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) CENP-Q PF13094.1 gi|119719640|ref|YP_920135.1| - 2.5 8.0 9.6 4.1 7.4 6.7 1.4 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit SHOCT PF09851.4 gi|119719641|ref|YP_920136.1| - 2.3e-07 30.0 17.0 0.00025 20.3 1.6 3.5 3 0 0 3 3 3 2 Short C-terminal domain GvpG PF05120.7 gi|119719641|ref|YP_920136.1| - 0.00081 19.1 1.9 0.00081 19.1 1.3 2.9 2 1 1 3 3 3 1 Gas vesicle protein G BLOC1_2 PF10046.4 gi|119719641|ref|YP_920136.1| - 0.0067 16.5 4.3 0.016 15.3 0.2 2.8 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Peptidase_C65 PF10275.4 gi|119719641|ref|YP_920136.1| - 0.053 12.8 0.8 0.1 11.9 0.1 1.7 2 0 0 2 2 2 0 Peptidase C65 Otubain Cep57_MT_bd PF06657.8 gi|119719641|ref|YP_920136.1| - 0.093 12.6 5.6 0.94 9.4 0.9 2.6 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 PilJ PF13675.1 gi|119719641|ref|YP_920136.1| - 0.16 12.3 1.3 4.6 7.5 0.1 2.8 2 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term AAA_27 PF13514.1 gi|119719641|ref|YP_920136.1| - 0.49 8.0 19.6 0.096 10.3 1.0 2.0 1 1 1 2 2 2 0 AAA domain THOC7 PF05615.8 gi|119719641|ref|YP_920136.1| - 0.8 9.9 11.6 2.6 8.3 2.2 2.7 1 1 0 2 2 2 0 Tho complex subunit 7 APG6 PF04111.7 gi|119719641|ref|YP_920136.1| - 2.5 7.0 11.2 2.2 7.2 4.2 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 SUKH-4 PF14435.1 gi|119719641|ref|YP_920136.1| - 3.4 7.3 5.9 1 9.0 0.2 2.7 2 1 1 3 3 3 0 SUKH-4 immunity protein CCDC-167 PF15188.1 gi|119719641|ref|YP_920136.1| - 6.2 6.8 13.4 4.4 7.3 2.2 2.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 GPI2 PF06432.6 gi|119719643|ref|YP_920138.1| - 0.077 12.3 0.3 0.095 12.0 0.2 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase EmrE PF13536.1 gi|119719643|ref|YP_920138.1| - 2.2 8.5 7.2 3.1 8.0 2.7 2.0 1 1 1 2 2 2 0 Multidrug resistance efflux transporter Ribosomal_L13e PF01294.13 gi|119719644|ref|YP_920139.1| - 1.4e-08 34.4 0.0 2.6e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L13e Ribosomal_L15e PF00827.12 gi|119719644|ref|YP_920139.1| - 0.0089 15.5 1.1 0.018 14.5 0.6 1.6 1 1 0 1 1 1 1 Ribosomal L15 RRN7 PF11781.3 gi|119719645|ref|YP_920140.1| - 2.5e-08 33.2 1.5 3.2e-08 32.9 1.0 1.2 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Prim_Zn_Ribbon PF08273.7 gi|119719645|ref|YP_920140.1| - 8.7e-05 22.5 1.0 0.00014 21.8 0.7 1.3 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.5 gi|119719645|ref|YP_920140.1| - 0.0002 20.7 1.0 0.00032 20.0 0.7 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|119719645|ref|YP_920140.1| - 0.00098 18.5 1.0 0.19 11.2 0.1 2.1 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit Ogr_Delta PF04606.7 gi|119719645|ref|YP_920140.1| - 0.0066 16.0 0.4 0.098 12.3 0.0 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger OrfB_Zn_ribbon PF07282.6 gi|119719645|ref|YP_920140.1| - 0.015 14.9 1.0 0.024 14.3 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|119719645|ref|YP_920140.1| - 0.02 14.6 2.6 0.035 13.9 1.9 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-trcl PF13451.1 gi|119719645|ref|YP_920140.1| - 0.027 14.1 0.5 0.095 12.3 0.5 1.7 1 1 1 2 2 2 0 Probable zinc-binding domain DUF2318 PF10080.4 gi|119719645|ref|YP_920140.1| - 0.03 14.0 0.2 0.035 13.8 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-HIT PF04438.11 gi|119719645|ref|YP_920140.1| - 0.035 13.7 5.9 0.14 11.7 4.1 1.8 1 1 0 1 1 1 0 HIT zinc finger TF_Zn_Ribbon PF08271.7 gi|119719645|ref|YP_920140.1| - 0.039 13.2 2.2 0.067 12.5 1.5 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|119719645|ref|YP_920140.1| - 0.046 13.3 1.5 3.6 7.3 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|119719645|ref|YP_920140.1| - 0.06 13.3 1.3 2.8 8.0 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S27 PF01599.14 gi|119719645|ref|YP_920140.1| - 0.06 13.1 1.1 0.083 12.7 0.8 1.2 1 0 0 1 1 1 0 Ribosomal protein S27a DZR PF12773.2 gi|119719645|ref|YP_920140.1| - 0.077 12.8 1.0 0.68 9.8 0.7 1.9 1 1 1 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|119719645|ref|YP_920140.1| - 0.17 11.4 2.5 3.1 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|119719645|ref|YP_920140.1| - 0.22 11.2 1.1 0.5 10.1 0.8 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Zn_ribbon_recom PF13408.1 gi|119719645|ref|YP_920140.1| - 2.2 8.6 7.1 19 5.5 4.9 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.5 gi|119719645|ref|YP_920140.1| - 2.5 8.1 5.8 4.7 7.2 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain LSM PF01423.17 gi|119719646|ref|YP_920141.1| - 2.6e-16 58.9 0.1 3.3e-16 58.5 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|119719646|ref|YP_920141.1| - 0.00067 19.5 0.0 0.00085 19.2 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain AdoMet_Synthase PF01941.14 gi|119719647|ref|YP_920142.1| - 2.1e-171 569.7 0.2 2.4e-171 569.5 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF460 PF04312.8 gi|119719648|ref|YP_920143.1| - 4e-46 155.9 0.0 4e-45 152.7 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) IncA PF04156.9 gi|119719648|ref|YP_920143.1| - 0.0061 16.1 12.1 0.012 15.2 8.4 1.4 1 0 0 1 1 1 1 IncA protein AATF-Che1 PF13339.1 gi|119719648|ref|YP_920143.1| - 0.021 15.0 2.0 0.046 13.8 1.4 1.5 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor Lge1 PF11488.3 gi|119719648|ref|YP_920143.1| - 0.058 13.6 7.7 6.4 7.0 4.7 3.5 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 ATG16 PF08614.6 gi|119719648|ref|YP_920143.1| - 0.079 12.7 10.2 0.33 10.7 7.1 1.8 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Atg14 PF10186.4 gi|119719648|ref|YP_920143.1| - 0.23 10.3 8.7 0.37 9.6 6.1 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIVA PF05103.8 gi|119719648|ref|YP_920143.1| - 0.24 11.4 7.0 0.63 10.0 1.5 2.3 1 1 1 2 2 2 0 DivIVA protein Acetyltransf_11 PF13720.1 gi|119719648|ref|YP_920143.1| - 0.34 11.1 2.9 3.5 7.9 0.7 3.2 3 0 0 3 3 3 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V_ATPase_I PF01496.14 gi|119719648|ref|YP_920143.1| - 0.84 7.4 1.0 1.1 7.0 0.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family GAS PF13851.1 gi|119719648|ref|YP_920143.1| - 1.4 8.0 9.0 3.4 6.7 6.2 1.6 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding APG6 PF04111.7 gi|119719648|ref|YP_920143.1| - 1.4 7.8 8.8 2.5 7.0 6.1 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 RIO1 PF01163.17 gi|119719649|ref|YP_920144.1| - 1.5e-46 158.1 0.0 2e-46 157.7 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|119719649|ref|YP_920144.1| - 2.6e-20 72.2 0.2 4.3e-20 71.5 0.2 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|119719649|ref|YP_920144.1| - 2.5e-09 37.2 0.6 0.00072 19.3 0.0 2.9 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|119719649|ref|YP_920144.1| - 0.00023 20.2 0.0 0.11 11.5 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family HrcA_DNA-bdg PF03444.10 gi|119719649|ref|YP_920144.1| - 0.0029 16.9 0.0 0.0067 15.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|119719649|ref|YP_920144.1| - 0.02 15.0 0.0 0.043 13.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Pkinase PF00069.20 gi|119719649|ref|YP_920144.1| - 0.15 11.1 0.0 5.6 6.0 0.0 2.1 2 0 0 2 2 2 0 Protein kinase domain Metallophos PF00149.23 gi|119719650|ref|YP_920145.1| - 1.4e-11 44.2 0.0 2.6e-11 43.3 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|119719650|ref|YP_920145.1| - 3.5e-11 43.1 0.0 6e-11 42.4 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Methyltransf_11 PF08241.7 gi|119719651|ref|YP_920146.1| - 2.3e-08 34.4 0.1 3.4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119719651|ref|YP_920146.1| - 3.6e-05 23.3 0.0 4.5e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719651|ref|YP_920146.1| - 0.00013 22.5 0.1 0.00022 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119719651|ref|YP_920146.1| - 0.00018 21.8 0.2 0.00026 21.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119719651|ref|YP_920146.1| - 0.00056 20.3 0.0 0.00083 19.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|119719651|ref|YP_920146.1| - 0.00078 19.1 0.0 0.0031 17.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MoeA_N PF03453.12 gi|119719651|ref|YP_920146.1| - 0.011 15.0 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 MoeA N-terminal region (domain I and II) CarboxypepD_reg PF13620.1 gi|119719652|ref|YP_920147.1| - 6.9e-10 38.8 9.7 2.5e-07 30.6 2.3 9.8 11 1 1 12 12 12 2 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|119719652|ref|YP_920147.1| - 5.3e-06 26.5 3.0 0.7 9.8 0.1 5.0 6 0 0 6 6 6 2 Domain of unknown function (DUF4198) MG1 PF11974.3 gi|119719652|ref|YP_920147.1| - 0.0091 16.5 7.7 0.2 12.2 0.1 6.0 7 0 0 7 7 7 1 Alpha-2-macroglobulin MG1 domain phage_tail_N PF08400.5 gi|119719652|ref|YP_920147.1| - 0.013 15.1 0.8 0.73 9.5 0.1 3.5 3 0 0 3 3 3 0 Prophage tail fibre N-terminal DUF824 PF05688.6 gi|119719652|ref|YP_920147.1| - 0.12 12.0 6.5 6.9 6.3 0.0 5.8 6 0 0 6 6 6 0 Salmonella repeat of unknown function (DUF824) DUF4480 PF13715.1 gi|119719652|ref|YP_920147.1| - 0.19 11.7 10.2 1.7 8.7 0.2 4.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4480) Rifin_STEVOR PF02009.11 gi|119719652|ref|YP_920147.1| - 1.2 8.7 0.0 2 7.9 0.0 1.2 1 0 0 1 1 1 0 Rifin/stevor family Rad51 PF08423.6 gi|119719653|ref|YP_920148.1| - 9.6e-54 181.9 0.0 1.4e-53 181.4 0.0 1.2 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|119719653|ref|YP_920148.1| - 1.4e-12 47.4 0.1 1.9e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|119719653|ref|YP_920148.1| - 2.2e-06 26.9 0.0 2.9e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_22 PF13401.1 gi|119719653|ref|YP_920148.1| - 8e-05 22.7 0.0 0.00012 22.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|119719653|ref|YP_920148.1| - 0.0038 17.5 0.0 0.0067 16.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter PAXNEB PF05625.6 gi|119719653|ref|YP_920148.1| - 0.0064 15.3 0.0 0.0093 14.8 0.0 1.2 1 0 0 1 1 1 1 PAXNEB protein RecA PF00154.16 gi|119719653|ref|YP_920148.1| - 0.0075 15.3 0.2 0.013 14.5 0.1 1.6 1 1 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|119719653|ref|YP_920148.1| - 0.0096 16.0 0.0 2.7 8.2 0.0 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain DUF1805 PF08827.6 gi|119719653|ref|YP_920148.1| - 0.019 14.7 0.0 0.42 10.4 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1805) AAA PF00004.24 gi|119719653|ref|YP_920148.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|119719654|ref|YP_920149.1| - 0.00036 20.0 0.0 0.00047 19.7 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|119719654|ref|YP_920149.1| - 0.0027 17.4 0.0 0.0059 16.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain GvpD PF07088.6 gi|119719654|ref|YP_920149.1| - 0.1 10.8 0.0 0.13 10.5 0.0 1.1 1 0 0 1 1 1 0 GvpD gas vesicle protein DUF814 PF05670.8 gi|119719655|ref|YP_920150.1| - 6.2e-27 93.3 0.0 1.1e-26 92.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) FbpA PF05833.6 gi|119719655|ref|YP_920150.1| - 5.3e-24 84.5 0.0 2.5e-23 82.3 0.0 1.8 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.9 gi|119719655|ref|YP_920150.1| - 0.19 11.5 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain CBS PF00571.23 gi|119719656|ref|YP_920151.1| - 0.064 13.0 0.1 0.26 11.0 0.0 2.2 2 0 0 2 2 2 0 CBS domain Mut7-C PF01927.11 gi|119719657|ref|YP_920152.1| - 2.3e-32 111.9 0.0 2.7e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DZR PF12773.2 gi|119719657|ref|YP_920152.1| - 0.072 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|119719657|ref|YP_920152.1| - 0.15 12.0 3.5 4.5 7.3 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|119719657|ref|YP_920152.1| - 0.79 9.7 3.3 12 5.9 2.3 2.3 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 AMMECR1 PF01871.12 gi|119719658|ref|YP_920153.1| - 9.5e-63 210.3 0.0 1.1e-62 210.1 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.1 gi|119719659|ref|YP_920154.1| - 5.9e-08 32.4 0.0 1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.6 gi|119719659|ref|YP_920154.1| - 1.3e-06 28.5 0.0 1.7e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD DUF1525 PF07511.6 gi|119719659|ref|YP_920154.1| - 0.00029 20.8 0.0 0.00046 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1525) DNA_ligase_A_M PF01068.16 gi|119719660|ref|YP_920155.1| - 8e-61 204.9 0.0 1.1e-60 204.4 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|119719660|ref|YP_920155.1| - 3.7e-51 173.4 0.1 7e-51 172.5 0.0 1.5 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|119719660|ref|YP_920155.1| - 2.6e-22 79.0 0.0 5.4e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|119719660|ref|YP_920155.1| - 0.001 18.6 0.0 0.0034 17.0 0.0 1.9 2 0 0 2 2 2 1 DNA ligase OB-like domain DUF1104 PF06518.6 gi|119719661|ref|YP_920156.1| - 0.019 15.1 2.8 1.4 9.0 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1104) PfkB PF00294.19 gi|119719662|ref|YP_920157.1| - 3.3e-51 174.2 0.1 4.5e-51 173.7 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase tRNA-Thr_ED PF08915.6 gi|119719664|ref|YP_920159.1| - 9.8e-55 184.3 0.0 1.8e-54 183.4 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|119719664|ref|YP_920159.1| - 9.6e-25 86.3 0.9 3.8e-24 84.4 0.5 2.1 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|119719664|ref|YP_920159.1| - 1.4e-16 60.5 2.2 1.5e-16 60.4 0.4 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) TIR_2 PF13676.1 gi|119719664|ref|YP_920159.1| - 0.096 12.8 0.0 0.45 10.6 0.0 2.2 2 0 0 2 2 2 0 TIR domain Radical_SAM PF04055.16 gi|119719665|ref|YP_920160.1| - 2.2e-10 40.9 0.3 5.4e-09 36.4 0.0 3.0 2 1 1 3 3 3 1 Radical SAM superfamily DUF504 PF04457.7 gi|119719666|ref|YP_920161.1| - 1.1e-06 28.6 0.5 1.4e-06 28.3 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF504) bPH_4 PF06713.6 gi|119719666|ref|YP_920161.1| - 0.059 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain Gp_dh_C PF02800.15 gi|119719667|ref|YP_920162.1| - 2.2e-64 215.6 0.0 3.1e-64 215.1 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|119719667|ref|YP_920162.1| - 1.9e-56 190.2 0.0 3e-56 189.5 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|119719667|ref|YP_920162.1| - 0.1 13.1 0.0 0.26 11.8 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Metallophos_2 PF12850.2 gi|119719668|ref|YP_920163.1| - 5.9e-14 52.1 0.1 9.6e-14 51.5 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|119719668|ref|YP_920163.1| - 1.2e-08 34.5 2.8 1.2e-07 31.3 1.9 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|119719668|ref|YP_920163.1| - 0.012 14.8 0.0 0.39 9.8 0.0 2.3 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily CarboxypepD_reg PF13620.1 gi|119719670|ref|YP_920165.1| - 1.5e-15 57.0 3.2 1.4e-08 34.6 0.5 3.9 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Thioredoxin_8 PF13905.1 gi|119719670|ref|YP_920165.1| - 2.4e-08 34.0 0.0 6e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like DUF4480 PF13715.1 gi|119719670|ref|YP_920165.1| - 1.1e-07 31.7 0.0 0.00073 19.5 0.0 2.7 1 1 1 2 2 2 2 Domain of unknown function (DUF4480) AhpC-TSA PF00578.16 gi|119719670|ref|YP_920165.1| - 8.4e-06 25.4 0.0 2.3e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|119719670|ref|YP_920165.1| - 1.4e-05 24.6 0.0 0.0056 16.3 0.0 2.5 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|119719670|ref|YP_920165.1| - 7e-05 22.9 0.0 0.0007 19.7 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin-like domain PEGA PF08308.6 gi|119719670|ref|YP_920165.1| - 0.00017 21.2 0.0 0.013 15.2 0.0 2.6 2 0 0 2 2 2 1 PEGA domain phage_tail_N PF08400.5 gi|119719670|ref|YP_920165.1| - 0.001 18.7 0.1 0.16 11.6 0.1 2.5 2 0 0 2 2 2 1 Prophage tail fibre N-terminal Redoxin PF08534.5 gi|119719670|ref|YP_920165.1| - 0.0013 18.3 0.0 0.0027 17.2 0.0 1.5 1 0 0 1 1 1 1 Redoxin DUF824 PF05688.6 gi|119719670|ref|YP_920165.1| - 0.0098 15.5 0.2 1.5 8.5 0.0 2.7 2 0 0 2 2 2 1 Salmonella repeat of unknown function (DUF824) Thioredoxin_3 PF13192.1 gi|119719670|ref|YP_920165.1| - 0.055 13.2 1.4 0.96 9.3 0.2 2.8 2 1 0 2 2 2 0 Thioredoxin domain Prefoldin PF02996.12 gi|119719671|ref|YP_920166.1| - 0.0001 21.9 2.5 0.048 13.3 0.5 2.3 2 0 0 2 2 2 2 Prefoldin subunit DUF2205 PF10224.4 gi|119719671|ref|YP_920166.1| - 0.0001 21.7 2.2 0.0001 21.7 1.5 1.7 2 0 0 2 2 2 1 Predicted coiled-coil protein (DUF2205) Spectrin PF00435.16 gi|119719671|ref|YP_920166.1| - 0.0035 17.6 1.0 0.4 10.9 0.1 2.1 2 0 0 2 2 2 1 Spectrin repeat Uds1 PF15456.1 gi|119719671|ref|YP_920166.1| - 0.0067 16.4 2.2 1.9 8.4 0.6 2.1 2 0 0 2 2 2 1 Up-regulated During Septation FliJ PF02050.11 gi|119719671|ref|YP_920166.1| - 0.0071 16.3 1.5 0.028 14.4 0.2 2.1 2 0 0 2 2 2 1 Flagellar FliJ protein NPV_P10 PF05531.7 gi|119719671|ref|YP_920166.1| - 0.0092 16.2 3.6 0.55 10.5 2.5 2.3 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.1 gi|119719671|ref|YP_920166.1| - 0.014 15.6 0.9 2.2 8.6 0.1 2.3 2 0 0 2 2 2 0 Snapin/Pallidin DivIC PF04977.10 gi|119719671|ref|YP_920166.1| - 0.016 14.6 3.0 0.042 13.3 0.5 2.1 2 0 0 2 2 2 0 Septum formation initiator GTPase_Cys_C PF12631.2 gi|119719671|ref|YP_920166.1| - 0.017 15.4 2.9 0.12 12.7 0.2 2.3 1 1 1 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Spc7 PF08317.6 gi|119719671|ref|YP_920166.1| - 0.026 13.1 3.5 0.034 12.8 2.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein ThiS PF02597.15 gi|119719671|ref|YP_920166.1| - 0.027 14.8 1.0 6.6 7.2 0.0 2.3 1 1 0 2 2 2 0 ThiS family P4Ha_N PF08336.6 gi|119719671|ref|YP_920166.1| - 0.031 14.0 0.7 0.1 12.3 0.2 1.8 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF948 PF06103.6 gi|119719671|ref|YP_920166.1| - 0.031 14.1 0.2 0.23 11.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Occludin_ELL PF07303.8 gi|119719671|ref|YP_920166.1| - 0.037 14.7 0.7 0.12 13.1 0.2 1.8 2 0 0 2 2 2 0 Occludin homology domain Med9 PF07544.8 gi|119719671|ref|YP_920166.1| - 0.05 13.3 2.7 4.2 7.1 0.1 2.5 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 3HCDH PF00725.17 gi|119719671|ref|YP_920166.1| - 0.06 13.7 0.0 0.077 13.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BLOC1_2 PF10046.4 gi|119719671|ref|YP_920166.1| - 0.072 13.2 5.6 0.11 12.5 1.0 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Not3 PF04065.10 gi|119719671|ref|YP_920166.1| - 0.074 12.3 3.0 0.12 11.6 2.1 1.4 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Lipoprotein_20 PF13942.1 gi|119719671|ref|YP_920166.1| - 0.088 12.3 0.5 0.17 11.4 0.3 1.4 1 0 0 1 1 1 0 YfhG lipoprotein Viral_P18 PF04521.8 gi|119719671|ref|YP_920166.1| - 0.097 12.1 0.4 0.097 12.1 0.3 1.6 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DASH_Dam1 PF08653.5 gi|119719671|ref|YP_920166.1| - 0.099 12.4 1.0 18 5.1 0.1 2.7 2 1 1 3 3 3 0 DASH complex subunit Dam1 SOG2 PF10428.4 gi|119719671|ref|YP_920166.1| - 0.13 10.8 0.1 4.8 5.7 0.0 2.0 2 0 0 2 2 2 0 RAM signalling pathway protein Sas10_Utp3 PF04000.10 gi|119719671|ref|YP_920166.1| - 0.15 12.2 2.3 2 8.6 1.1 2.4 1 1 1 2 2 2 0 Sas10/Utp3/C1D family DLIC PF05783.6 gi|119719671|ref|YP_920166.1| - 0.18 10.4 1.2 0.35 9.4 0.6 1.5 1 1 1 2 2 2 0 Dynein light intermediate chain (DLIC) DUF4200 PF13863.1 gi|119719671|ref|YP_920166.1| - 0.18 11.7 6.1 0.15 12.0 2.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) OEP PF02321.13 gi|119719671|ref|YP_920166.1| - 0.2 11.2 4.4 0.084 12.4 0.8 1.8 2 0 0 2 2 2 0 Outer membrane efflux protein Hrs_helical PF12210.3 gi|119719671|ref|YP_920166.1| - 0.21 11.8 2.7 9.2 6.6 0.2 2.1 2 0 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DASH_Duo1 PF08651.5 gi|119719671|ref|YP_920166.1| - 0.26 10.8 1.8 8.3 6.0 0.6 2.3 2 0 0 2 2 2 0 DASH complex subunit Duo1 AMP-binding_C_2 PF14535.1 gi|119719671|ref|YP_920166.1| - 0.32 11.0 2.2 11 6.1 0.2 2.1 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain K-box PF01486.12 gi|119719671|ref|YP_920166.1| - 0.37 10.6 5.6 0.36 10.6 1.7 2.4 1 1 1 2 2 2 0 K-box region Prefoldin_2 PF01920.15 gi|119719671|ref|YP_920166.1| - 0.43 10.3 8.7 0.54 10.0 2.0 2.7 2 1 1 3 3 3 0 Prefoldin subunit Sec34 PF04136.10 gi|119719671|ref|YP_920166.1| - 0.46 10.1 2.6 2.1 8.0 1.7 1.9 1 1 0 1 1 1 0 Sec34-like family DUF1978 PF09321.5 gi|119719671|ref|YP_920166.1| - 0.69 9.3 5.4 0.84 9.0 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) DUF4140 PF13600.1 gi|119719671|ref|YP_920166.1| - 0.78 10.2 4.7 7 7.1 0.6 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DASH_Dad3 PF08656.5 gi|119719671|ref|YP_920166.1| - 0.86 9.3 7.0 1.1 9.0 1.7 2.3 2 1 0 2 2 2 0 DASH complex subunit Dad3 DUF848 PF05852.6 gi|119719671|ref|YP_920166.1| - 1 9.2 6.1 0.46 10.3 1.0 1.9 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) IncA PF04156.9 gi|119719671|ref|YP_920166.1| - 2.1 7.9 10.1 8.9 5.8 7.0 1.8 1 1 0 1 1 1 0 IncA protein CENP-Q PF13094.1 gi|119719671|ref|YP_920166.1| - 2.2 8.2 6.6 4.8 7.1 4.6 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Cep57_CLD_2 PF14197.1 gi|119719671|ref|YP_920166.1| - 3.3 7.7 6.7 3.1 7.8 1.0 2.3 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 CorA PF01544.13 gi|119719671|ref|YP_920166.1| - 3.6 6.5 6.2 17 4.2 4.3 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Nsp1_C PF05064.8 gi|119719671|ref|YP_920166.1| - 3.7 7.2 7.6 5.1 6.7 1.0 2.2 1 1 0 2 2 2 0 Nsp1-like C-terminal region Cortex-I_coil PF09304.5 gi|119719671|ref|YP_920166.1| - 5.7 7.0 8.2 7.3 6.6 0.2 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Prenyltransf PF01255.14 gi|119719672|ref|YP_920167.1| - 3.9e-83 277.9 0.0 4.6e-83 277.7 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DeoC PF01791.4 gi|119719673|ref|YP_920168.1| - 4.1e-39 134.2 0.2 4.6e-39 134.1 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ACP_syn_III_C PF08541.5 gi|119719674|ref|YP_920169.1| - 2.7e-11 43.3 0.0 5.6e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|119719674|ref|YP_920169.1| - 6.7e-07 28.8 1.6 3.2e-06 26.7 0.4 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|119719674|ref|YP_920169.1| - 0.00038 20.0 0.1 0.01 15.3 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|119719674|ref|YP_920169.1| - 0.0033 16.9 0.0 0.0051 16.3 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|119719674|ref|YP_920169.1| - 0.0046 15.9 0.0 0.0066 15.4 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|119719675|ref|YP_920170.1| - 9.9e-13 47.5 1.3 3.4e-11 42.6 0.2 3.1 3 0 0 3 3 3 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|119719675|ref|YP_920170.1| - 8.9e-09 34.7 0.1 7.2e-08 31.7 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|119719675|ref|YP_920170.1| - 1.8e-05 24.3 4.1 0.0024 17.4 1.8 2.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|119719675|ref|YP_920170.1| - 1.9e-05 24.2 0.9 0.004 16.7 0.1 2.4 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|119719675|ref|YP_920170.1| - 2.5e-05 24.1 1.2 0.004 16.9 0.0 3.5 4 0 0 4 4 4 1 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|119719676|ref|YP_920171.1| - 1.1e-16 60.7 2.9 1.5e-16 60.3 2.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|119719676|ref|YP_920171.1| - 4.3e-09 36.0 0.2 9.2e-09 34.9 0.2 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|119719676|ref|YP_920171.1| - 0.009 15.8 1.5 0.014 15.1 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|119719676|ref|YP_920171.1| - 0.012 15.3 0.3 0.019 14.6 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|119719676|ref|YP_920171.1| - 0.08 12.1 5.3 0.15 11.3 0.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain RE_MamI PF09567.5 gi|119719676|ref|YP_920171.1| - 0.081 11.9 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 MamI restriction endonuclease TF_Zn_Ribbon PF08271.7 gi|119719676|ref|YP_920171.1| - 0.1 11.9 2.6 1.1 8.6 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.1 gi|119719676|ref|YP_920171.1| - 0.12 10.4 0.2 0.15 10.1 0.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-C3HC4_3 PF13920.1 gi|119719676|ref|YP_920171.1| - 0.15 11.7 1.0 0.24 11.0 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|119719676|ref|YP_920171.1| - 0.18 11.3 5.8 0.5 9.9 3.9 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|119719676|ref|YP_920171.1| - 0.18 11.7 5.7 7.1 6.6 4.0 2.4 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|119719676|ref|YP_920171.1| - 0.3 10.9 0.3 0.3 10.9 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|119719676|ref|YP_920171.1| - 0.36 10.6 1.6 2.1 8.1 0.1 2.1 1 1 1 2 2 2 0 Zinc-ribbon zf-C2H2 PF00096.21 gi|119719676|ref|YP_920171.1| - 7.8 7.0 6.4 1.3 9.4 1.0 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|119719677|ref|YP_920172.1| - 0.0069 16.3 0.9 0.013 15.4 0.7 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Toxin-deaminase PF14424.1 gi|119719677|ref|YP_920172.1| - 0.01 15.7 0.0 0.012 15.5 0.0 1.1 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases zf-C2HC5 PF06221.8 gi|119719677|ref|YP_920172.1| - 0.022 14.4 0.1 0.033 13.9 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type HypA PF01155.14 gi|119719677|ref|YP_920172.1| - 0.044 13.4 0.1 0.058 13.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3039 PF11238.3 gi|119719677|ref|YP_920172.1| - 0.055 12.9 0.4 0.09 12.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) TF_Zn_Ribbon PF08271.7 gi|119719677|ref|YP_920172.1| - 0.15 11.3 2.4 4.1 6.7 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|119719677|ref|YP_920172.1| - 0.21 11.3 4.9 0.24 11.1 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|119719677|ref|YP_920172.1| - 0.86 9.5 3.6 13 5.7 2.5 2.1 1 1 0 1 1 1 0 Rubredoxin Nol1_Nop2_Fmu PF01189.12 gi|119719678|ref|YP_920173.1| - 2e-23 83.1 0.0 3.1e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 NOL1/NOP2/sun family HTH_20 PF12840.2 gi|119719679|ref|YP_920174.1| - 1.4e-05 24.7 0.0 2.9e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|119719679|ref|YP_920174.1| - 0.0001 22.2 0.1 0.00066 19.6 0.1 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF360 PF04020.8 gi|119719679|ref|YP_920174.1| - 0.0079 16.5 5.4 0.0079 16.5 3.7 1.7 1 1 1 2 2 2 1 Membrane protein of unknown function MarR PF01047.17 gi|119719679|ref|YP_920174.1| - 0.029 14.0 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|119719679|ref|YP_920174.1| - 0.032 14.0 0.2 0.06 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3955 PF13127.1 gi|119719679|ref|YP_920174.1| - 0.049 13.1 1.4 0.049 13.1 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) DUF1972 PF09314.6 gi|119719679|ref|YP_920174.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1972) YjgP_YjgQ PF03739.9 gi|119719679|ref|YP_920174.1| - 0.39 9.4 6.9 6.8 5.3 4.8 2.3 1 1 0 1 1 1 0 Predicted permease YjgP/YjgQ family Nudix_N_2 PF14803.1 gi|119719681|ref|YP_920176.1| - 0.0021 17.7 0.5 0.0041 16.7 0.4 1.5 1 0 0 1 1 1 1 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|119719681|ref|YP_920176.1| - 0.0025 17.2 0.5 0.64 9.5 0.0 2.3 2 0 0 2 2 2 1 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|119719681|ref|YP_920176.1| - 0.0029 17.3 0.2 0.0052 16.5 0.1 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|119719681|ref|YP_920176.1| - 0.0034 17.2 3.7 0.25 11.2 0.1 2.7 3 0 0 3 3 3 2 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|119719681|ref|YP_920176.1| - 0.0085 16.0 1.2 0.33 10.9 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|119719681|ref|YP_920176.1| - 0.013 15.2 1.5 0.3 10.9 0.1 2.6 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|119719681|ref|YP_920176.1| - 0.015 14.4 2.0 0.17 11.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|119719681|ref|YP_920176.1| - 0.053 13.3 0.4 5.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.6 gi|119719681|ref|YP_920176.1| - 0.066 12.8 0.1 0.14 11.7 0.1 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|119719681|ref|YP_920176.1| - 0.079 12.2 5.2 1.3 8.4 3.6 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|119719681|ref|YP_920176.1| - 0.1 12.1 2.5 0.93 9.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|119719681|ref|YP_920176.1| - 0.3 11.1 1.7 3.3 7.8 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-IS66 PF13005.2 gi|119719681|ref|YP_920176.1| - 0.91 9.5 3.5 1.9 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1610 PF07754.6 gi|119719681|ref|YP_920176.1| - 1.9 8.7 10.3 15 5.7 3.0 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF1610) DUF95 PF01944.12 gi|119719682|ref|YP_920177.1| - 3.7e-05 23.4 2.5 0.00015 21.4 1.7 1.8 1 1 0 1 1 1 1 Integral membrane protein DUF95 Syd PF07348.7 gi|119719682|ref|YP_920177.1| - 0.005 16.1 0.0 0.0077 15.5 0.0 1.3 1 0 0 1 1 1 1 Syd protein (SUKH-2) DUF4131 PF13567.1 gi|119719682|ref|YP_920177.1| - 0.053 12.9 3.4 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Herpes_U26 PF07402.6 gi|119719682|ref|YP_920177.1| - 0.053 12.8 0.0 0.077 12.2 0.0 1.3 1 0 0 1 1 1 0 Human herpesvirus U26 protein DUF2569 PF10754.4 gi|119719682|ref|YP_920177.1| - 0.12 12.6 1.7 0.19 11.9 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2569) PGK PF00162.14 gi|119719683|ref|YP_920178.1| - 3.8e-123 410.8 0.2 4.5e-123 410.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase PAC2 PF09754.4 gi|119719684|ref|YP_920179.1| - 5.3e-38 131.0 0.0 6.5e-38 130.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family CoA_binding_2 PF13380.1 gi|119719684|ref|YP_920179.1| - 0.091 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain UNC45-central PF11701.3 gi|119719684|ref|YP_920179.1| - 0.11 12.1 0.0 4.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Myosin-binding striated muscle assembly central HSP20 PF00011.16 gi|119719685|ref|YP_920180.1| - 1.9e-12 46.9 0.0 3.1e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family DUF4097 PF13349.1 gi|119719685|ref|YP_920180.1| - 2.3e-06 27.2 0.0 2.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4097) PIH1 PF08190.7 gi|119719685|ref|YP_920180.1| - 0.00028 20.4 0.1 0.00032 20.2 0.1 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 CS PF04969.11 gi|119719685|ref|YP_920180.1| - 0.0088 16.5 0.0 0.028 14.9 0.0 1.8 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|119719685|ref|YP_920180.1| - 0.056 13.0 0.0 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 GvpH HTH_3 PF01381.17 gi|119719686|ref|YP_920181.1| - 2.6e-08 33.5 0.0 5.5e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|119719686|ref|YP_920181.1| - 3.5e-07 30.3 0.0 8.8e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|119719686|ref|YP_920181.1| - 9.8e-07 28.7 0.0 2.7e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|119719686|ref|YP_920181.1| - 0.038 13.8 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1902 PF08972.6 gi|119719686|ref|YP_920181.1| - 0.04 13.4 0.0 0.093 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) HTH_25 PF13413.1 gi|119719686|ref|YP_920181.1| - 0.1 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain T2SF PF00482.18 gi|119719687|ref|YP_920182.1| - 9.2e-10 38.4 4.4 9.2e-10 38.4 3.0 2.1 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Pam17 PF08566.5 gi|119719687|ref|YP_920182.1| - 0.17 11.5 0.5 0.35 10.5 0.3 1.5 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 Amidohydro_3 PF07969.6 gi|119719688|ref|YP_920183.1| - 6.9e-64 216.5 0.0 8.4e-64 216.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|119719688|ref|YP_920183.1| - 1.7e-08 34.1 0.0 3.6e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|119719688|ref|YP_920183.1| - 0.00096 19.2 0.2 0.023 14.7 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|119719688|ref|YP_920183.1| - 0.0068 16.0 0.0 0.022 14.4 0.0 1.8 2 0 0 2 2 2 1 Amidohydrolase family TPP_enzyme_C PF02775.16 gi|119719691|ref|YP_920186.1| - 4.1e-28 97.8 0.1 7.6e-28 97.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|119719691|ref|YP_920186.1| - 1.3e-15 57.5 0.1 8e-15 54.9 0.0 2.0 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|119719691|ref|YP_920186.1| - 3.6e-08 32.6 22.8 8.3e-06 25.1 4.4 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|119719691|ref|YP_920186.1| - 7.3e-08 32.0 1.0 0.0026 17.2 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_10 PF13237.1 gi|119719691|ref|YP_920186.1| - 3.1e-06 26.8 20.0 2.5e-05 23.9 7.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119719691|ref|YP_920186.1| - 5.5e-06 26.1 10.1 1.3e-05 24.9 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119719691|ref|YP_920186.1| - 1.9e-05 24.9 13.1 0.00016 21.9 8.7 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719691|ref|YP_920186.1| - 5.2e-05 22.9 23.5 0.0008 19.1 1.9 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|119719691|ref|YP_920186.1| - 6.1e-05 22.7 20.7 0.00045 19.9 3.2 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119719691|ref|YP_920186.1| - 0.00083 19.5 11.9 0.00083 19.5 8.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719691|ref|YP_920186.1| - 0.0034 17.3 10.8 0.016 15.1 7.5 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119719691|ref|YP_920186.1| - 0.0098 16.3 10.5 0.31 11.4 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain E1_dh PF00676.15 gi|119719691|ref|YP_920186.1| - 0.024 13.3 0.3 0.05 12.3 0.2 1.5 1 0 0 1 1 1 0 Dehydrogenase E1 component Fer4_16 PF13484.1 gi|119719691|ref|YP_920186.1| - 0.026 15.2 8.1 0.15 12.7 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|119719691|ref|YP_920186.1| - 0.028 14.7 3.9 0.028 14.7 2.7 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain CedA PF10729.4 gi|119719691|ref|YP_920186.1| - 0.049 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Cell division activator CedA Fer4_11 PF13247.1 gi|119719691|ref|YP_920186.1| - 0.12 12.2 5.6 0.25 11.2 3.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119719691|ref|YP_920186.1| - 0.38 11.1 11.0 2.1 8.7 1.6 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|119719691|ref|YP_920186.1| - 1.5 9.4 15.9 3.9 8.1 2.3 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|119719692|ref|YP_920187.1| - 4.3e-33 114.6 0.0 5.1e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AdoHcyase_NAD PF00670.16 gi|119719692|ref|YP_920187.1| - 0.26 11.1 3.3 11 5.8 0.0 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Glyco_transf_28 PF03033.15 gi|119719692|ref|YP_920187.1| - 0.44 10.2 2.2 0.57 9.9 0.7 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain FAD_binding_3 PF01494.14 gi|119719693|ref|YP_920188.1| - 1.2e-06 27.8 2.3 0.0012 17.9 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|119719693|ref|YP_920188.1| - 0.00014 21.8 0.1 0.00032 20.6 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|119719693|ref|YP_920188.1| - 0.00037 20.4 3.0 0.003 17.5 0.2 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|119719693|ref|YP_920188.1| - 0.0019 17.2 0.1 1.4 7.7 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.22 gi|119719693|ref|YP_920188.1| - 0.0044 17.4 0.2 0.032 14.6 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DUF3653 PF12375.3 gi|119719693|ref|YP_920188.1| - 0.021 15.0 0.0 0.037 14.2 0.0 1.4 1 0 0 1 1 1 0 Phage protein HI0933_like PF03486.9 gi|119719693|ref|YP_920188.1| - 0.036 12.5 0.0 0.1 11.0 0.0 1.7 2 0 0 2 2 2 0 HI0933-like protein DAO PF01266.19 gi|119719693|ref|YP_920188.1| - 0.036 12.9 0.3 0.09 11.6 0.1 1.9 1 1 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|119719693|ref|YP_920188.1| - 0.051 12.4 0.0 0.19 10.5 0.0 1.9 1 1 1 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.1 gi|119719693|ref|YP_920188.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PadR PF03551.9 gi|119719694|ref|YP_920189.1| - 0.00022 20.9 0.9 0.0018 18.0 0.6 2.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|119719694|ref|YP_920189.1| - 0.0023 18.1 0.0 0.007 16.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|119719694|ref|YP_920189.1| - 0.024 14.3 0.0 0.049 13.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.5 gi|119719694|ref|YP_920189.1| - 0.077 12.7 0.2 0.61 9.8 0.2 2.3 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain ArsR PF09824.4 gi|119719694|ref|YP_920189.1| - 0.089 12.1 0.1 0.2 10.9 0.0 1.6 2 0 0 2 2 2 0 ArsR transcriptional regulator CarboxypepD_reg PF13620.1 gi|119719695|ref|YP_920190.1| - 3.9e-10 39.6 2.1 9.4e-06 25.6 0.1 3.4 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF2012 PF09430.5 gi|119719695|ref|YP_920190.1| - 0.0014 18.4 0.0 0.0058 16.4 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2012) Y_Y_Y PF07495.8 gi|119719695|ref|YP_920190.1| - 0.016 14.9 0.0 1.7 8.4 0.0 3.0 3 0 0 3 3 3 0 Y_Y_Y domain Cna_B PF05738.8 gi|119719695|ref|YP_920190.1| - 0.042 13.6 0.0 5.7 6.7 0.0 2.6 2 0 0 2 2 2 0 Cna protein B-type domain PapC_N PF13954.1 gi|119719695|ref|YP_920190.1| - 0.051 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 PapC N-terminal domain DUF4198 PF10670.4 gi|119719695|ref|YP_920190.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4198) tRNA-synt_1f PF01921.13 gi|119719696|ref|YP_920191.1| - 3.4e-91 305.6 0.6 8.9e-91 304.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) Zn_Tnp_IS1595 PF12760.2 gi|119719696|ref|YP_920191.1| - 0.044 13.6 1.1 0.1 12.3 0.8 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|119719696|ref|YP_920191.1| - 0.43 10.2 4.4 1.6 8.4 3.1 1.9 1 1 0 1 1 1 0 Nudix N-terminal DUF2757 PF10955.3 gi|119719696|ref|YP_920191.1| - 0.46 10.7 3.9 2.6 8.2 0.6 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2757) DUF4010 PF13194.1 gi|119719697|ref|YP_920192.1| - 0.012 14.8 1.7 0.015 14.6 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) Ni_hydr_CYTB PF01292.15 gi|119719697|ref|YP_920192.1| - 0.031 13.6 4.3 0.052 12.9 3.0 1.5 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 OppC_N PF12911.2 gi|119719697|ref|YP_920192.1| - 0.3 10.5 0.0 0.3 10.5 0.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF3995 PF13160.1 gi|119719697|ref|YP_920192.1| - 0.36 10.8 3.6 0.11 12.4 0.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) Syndecan PF01034.15 gi|119719697|ref|YP_920192.1| - 0.41 10.3 3.2 3.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Syndecan domain Peptidase_M50 PF02163.17 gi|119719697|ref|YP_920192.1| - 0.94 8.4 3.1 1.8 7.5 2.2 1.6 1 1 0 1 1 1 0 Peptidase family M50 NfeD PF01957.13 gi|119719697|ref|YP_920192.1| - 1.7 8.7 6.3 2.3 8.3 4.0 1.6 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding UPF0233 PF06781.7 gi|119719697|ref|YP_920192.1| - 2.6 7.7 8.9 0.43 10.2 0.2 2.5 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0233) Tetraspannin PF00335.15 gi|119719697|ref|YP_920192.1| - 2.9 7.0 6.2 4.6 6.4 4.3 1.3 1 1 0 1 1 1 0 Tetraspanin family NPV_P10 PF05531.7 gi|119719698|ref|YP_920193.1| - 6.8e-07 29.4 34.4 0.0016 18.6 2.3 7.7 3 3 5 8 8 8 2 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|119719698|ref|YP_920193.1| - 1.5e-06 27.0 26.0 1.5e-06 27.0 18.0 3.8 1 1 1 3 3 3 1 AAA domain Apolipoprotein PF01442.13 gi|119719698|ref|YP_920193.1| - 4.2e-05 23.1 7.1 4.2e-05 23.1 4.9 5.2 1 1 3 4 4 3 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|119719698|ref|YP_920193.1| - 0.0002 21.2 38.4 0.024 14.4 6.2 6.3 1 1 2 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.1 gi|119719698|ref|YP_920193.1| - 0.00027 20.2 19.3 0.00027 20.2 13.4 5.2 1 1 4 5 5 4 2 Growth-arrest specific micro-tubule binding CorA PF01544.13 gi|119719698|ref|YP_920193.1| - 0.0003 19.9 7.5 0.0003 19.9 5.2 4.7 1 1 4 5 5 4 2 CorA-like Mg2+ transporter protein Reo_sigmaC PF04582.7 gi|119719698|ref|YP_920193.1| - 0.00071 18.8 30.4 0.021 14.0 3.4 4.4 1 1 1 4 4 4 3 Reovirus sigma C capsid protein Fzo_mitofusin PF04799.8 gi|119719698|ref|YP_920193.1| - 0.00096 18.5 1.6 0.00096 18.5 1.1 6.5 1 1 5 7 7 7 1 fzo-like conserved region DUF3552 PF12072.3 gi|119719698|ref|YP_920193.1| - 0.003 16.7 23.1 0.003 16.7 16.0 5.9 1 1 4 6 6 6 2 Domain of unknown function (DUF3552) DUF4201 PF13870.1 gi|119719698|ref|YP_920193.1| - 0.0044 16.4 18.0 0.0044 16.4 12.5 6.2 1 1 5 6 6 6 1 Domain of unknown function (DUF4201) RmuC PF02646.11 gi|119719698|ref|YP_920193.1| - 0.0046 15.8 3.6 0.0046 15.8 2.5 6.6 3 2 4 7 7 7 3 RmuC family Nup54 PF13874.1 gi|119719698|ref|YP_920193.1| - 0.0077 15.9 2.1 0.0077 15.9 1.5 6.8 1 1 5 6 6 6 1 Nucleoporin complex subunit 54 BLOC1_2 PF10046.4 gi|119719698|ref|YP_920193.1| - 0.0088 16.1 70.4 0.3 11.2 3.4 7.2 3 1 3 7 7 7 5 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad3 PF08656.5 gi|119719698|ref|YP_920193.1| - 0.017 14.7 0.9 0.017 14.7 0.6 8.9 2 2 6 9 9 8 0 DASH complex subunit Dad3 DASH_Duo1 PF08651.5 gi|119719698|ref|YP_920193.1| - 0.018 14.6 0.3 0.018 14.6 0.2 6.5 6 2 3 9 9 8 0 DASH complex subunit Duo1 Spc7 PF08317.6 gi|119719698|ref|YP_920193.1| - 0.06 11.9 92.1 0.2 10.2 12.8 5.2 1 1 5 6 6 6 0 Spc7 kinetochore protein MCPsignal PF00015.16 gi|119719698|ref|YP_920193.1| - 0.12 11.9 39.0 0.015 14.8 2.9 5.3 1 1 4 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain ATG16 PF08614.6 gi|119719698|ref|YP_920193.1| - 0.13 12.0 90.5 0.77 9.5 5.8 5.8 1 1 2 5 5 5 0 Autophagy protein 16 (ATG16) COG2 PF06148.6 gi|119719698|ref|YP_920193.1| - 0.25 11.2 61.4 0.59 10.0 3.7 6.8 1 1 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF869 PF05911.6 gi|119719698|ref|YP_920193.1| - 0.59 8.2 85.4 0.067 11.4 19.9 3.2 1 1 2 3 3 3 0 Plant protein of unknown function (DUF869) DUF1664 PF07889.7 gi|119719698|ref|YP_920193.1| - 2.1 8.1 51.3 0.26 11.0 4.1 6.6 2 1 3 6 6 6 0 Protein of unknown function (DUF1664) Occludin_ELL PF07303.8 gi|119719698|ref|YP_920193.1| - 3 8.6 51.0 3.3 8.4 6.6 7.1 1 1 5 8 8 7 0 Occludin homology domain V_ATPase_I PF01496.14 gi|119719698|ref|YP_920193.1| - 6.9 4.3 68.3 0.058 11.2 9.2 4.5 1 1 2 4 4 4 0 V-type ATPase 116kDa subunit family Filament PF00038.16 gi|119719698|ref|YP_920193.1| - 8 5.8 86.3 0.012 15.1 7.4 5.1 1 1 2 4 4 3 0 Intermediate filament protein DUF4200 PF13863.1 gi|119719698|ref|YP_920193.1| - 8.7 6.3 112.1 0.58 10.1 0.1 8.1 2 2 4 8 8 8 0 Domain of unknown function (DUF4200) DUF1926 PF09095.6 gi|119719701|ref|YP_920196.1| - 8.3e-67 225.3 0.0 4.3e-65 219.6 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF1926) DUF1925 PF09094.6 gi|119719701|ref|YP_920196.1| - 5.1e-33 112.8 0.7 1e-32 111.9 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_57 PF03065.10 gi|119719701|ref|YP_920196.1| - 8.1e-27 94.0 0.0 1.5e-26 93.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glyco_hydro_38 PF01074.17 gi|119719701|ref|YP_920196.1| - 1.5e-06 27.7 0.0 6.4e-06 25.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_transf_5 PF08323.6 gi|119719702|ref|YP_920197.1| - 5.4e-28 98.1 0.0 9.3e-28 97.3 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|119719702|ref|YP_920197.1| - 4.5e-25 88.0 0.0 8e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119719702|ref|YP_920197.1| - 5.8e-13 49.1 0.1 1.2e-12 48.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|119719702|ref|YP_920197.1| - 0.00066 19.8 0.0 0.0077 16.4 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119719702|ref|YP_920197.1| - 0.0011 19.0 6.0 0.002 18.3 3.0 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain HTH_23 PF13384.1 gi|119719703|ref|YP_920198.1| - 0.00016 21.1 0.0 0.00036 20.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|119719703|ref|YP_920198.1| - 0.0002 20.8 0.0 0.00043 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|119719703|ref|YP_920198.1| - 0.0017 17.8 0.1 0.0084 15.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|119719703|ref|YP_920198.1| - 0.0038 16.5 0.0 0.0089 15.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|119719703|ref|YP_920198.1| - 0.0042 16.6 0.0 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|119719703|ref|YP_920198.1| - 0.0087 15.5 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_40 PF14493.1 gi|119719703|ref|YP_920198.1| - 0.012 15.8 0.2 0.024 14.8 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|119719703|ref|YP_920198.1| - 0.023 14.2 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HALZ PF02183.13 gi|119719703|ref|YP_920198.1| - 0.023 14.3 3.5 0.039 13.6 2.4 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper COG2 PF06148.6 gi|119719703|ref|YP_920198.1| - 0.034 14.0 0.1 0.076 12.8 0.1 1.6 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.6 gi|119719703|ref|YP_920198.1| - 0.041 13.7 0.5 0.086 12.7 0.1 1.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) HTH_20 PF12840.2 gi|119719703|ref|YP_920198.1| - 0.042 13.6 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PTE PF02126.13 gi|119719703|ref|YP_920198.1| - 0.067 12.1 0.0 0.086 11.8 0.0 1.1 1 0 0 1 1 1 0 Phosphotriesterase family DUF1995 PF09353.5 gi|119719703|ref|YP_920198.1| - 0.069 12.7 0.0 0.12 12.0 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1995) Herpes_BLRF2 PF05812.7 gi|119719703|ref|YP_920198.1| - 0.074 12.8 1.9 0.14 11.9 1.3 1.4 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein HTH_IclR PF09339.5 gi|119719703|ref|YP_920198.1| - 0.093 12.3 0.9 0.18 11.4 0.0 1.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|119719703|ref|YP_920198.1| - 0.12 11.9 0.6 5.3 6.7 0.0 2.5 3 0 0 3 3 3 0 HTH DNA binding domain TrmB PF01978.14 gi|119719703|ref|YP_920198.1| - 0.15 11.8 1.2 0.66 9.7 0.0 2.4 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_31 PF13560.1 gi|119719703|ref|YP_920198.1| - 0.24 11.6 2.7 0.4 10.9 0.1 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain Prefoldin_2 PF01920.15 gi|119719703|ref|YP_920198.1| - 0.29 10.9 3.1 0.55 10.0 1.0 2.0 2 0 0 2 2 2 0 Prefoldin subunit Pox_A_type_inc PF04508.7 gi|119719703|ref|YP_920198.1| - 2.1 8.3 9.5 2.1 8.3 4.8 2.4 2 1 1 3 3 3 0 Viral A-type inclusion protein repeat KaiC PF06745.8 gi|119719704|ref|YP_920199.1| - 8.4e-86 286.7 0.0 9.4e-86 286.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|119719704|ref|YP_920199.1| - 5.3e-09 35.7 0.0 7.8e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|119719704|ref|YP_920199.1| - 1.9e-06 26.5 0.1 3.7e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|119719704|ref|YP_920199.1| - 0.0017 18.0 0.0 0.0049 16.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain MEDS PF14417.1 gi|119719704|ref|YP_920199.1| - 0.0071 15.4 0.0 0.01 14.8 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DnaB_C PF03796.10 gi|119719704|ref|YP_920199.1| - 0.01 14.7 0.0 0.012 14.4 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain T2SE PF00437.15 gi|119719704|ref|YP_920199.1| - 0.024 13.5 0.0 0.045 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|119719704|ref|YP_920199.1| - 0.036 14.2 0.0 0.095 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|119719704|ref|YP_920199.1| - 0.046 12.6 0.0 0.058 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PPV_E1_C PF00519.12 gi|119719704|ref|YP_920199.1| - 0.097 11.2 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase AAA_33 PF13671.1 gi|119719704|ref|YP_920199.1| - 0.14 12.0 0.0 0.25 11.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain Glutaredoxin PF00462.19 gi|119719705|ref|YP_920200.1| - 0.00065 19.6 0.2 0.0015 18.4 0.1 1.6 1 0 0 1 1 1 1 Glutaredoxin CarboxypepD_reg PF13620.1 gi|119719705|ref|YP_920200.1| - 0.00099 19.1 3.7 0.001 19.0 0.3 2.6 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|119719705|ref|YP_920200.1| - 0.011 15.7 0.1 0.027 14.4 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|119719705|ref|YP_920200.1| - 0.014 15.1 0.7 0.12 12.2 0.1 2.3 2 0 0 2 2 2 0 PEGA domain DUF521 PF04412.8 gi|119719706|ref|YP_920201.1| - 7.9e-129 429.7 0.0 8.9e-129 429.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.11 gi|119719707|ref|YP_920202.1| - 2e-33 113.8 0.3 2.6e-33 113.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF126 UDG PF03167.14 gi|119719708|ref|YP_920203.1| - 3.5e-42 143.4 0.0 4.6e-42 143.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF3043 PF11241.3 gi|119719709|ref|YP_920204.1| - 0.11 12.1 0.7 0.17 11.4 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) YlaC PF10777.4 gi|119719709|ref|YP_920204.1| - 0.12 11.9 2.3 0.19 11.2 1.6 1.3 1 0 0 1 1 1 0 Inner membrane protein YlaC Replic_Relax PF13814.1 gi|119719710|ref|YP_920205.1| - 0.06 13.1 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation Baculo_PEP_C PF04513.7 gi|119719711|ref|YP_920206.1| - 1.8e-08 34.2 14.3 2.8e-05 23.9 3.3 2.9 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus IFT57 PF10498.4 gi|119719711|ref|YP_920206.1| - 2.9e-05 22.9 2.7 2.9e-05 22.9 1.8 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 IncA PF04156.9 gi|119719711|ref|YP_920206.1| - 8.6e-05 22.2 20.4 0.0051 16.4 1.8 2.9 1 1 0 2 2 2 1 IncA protein DUF3584 PF12128.3 gi|119719711|ref|YP_920206.1| - 9.4e-05 19.9 8.0 0.00012 19.6 5.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) GAS PF13851.1 gi|119719711|ref|YP_920206.1| - 0.00013 21.1 14.4 0.015 14.5 5.9 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Reo_sigmaC PF04582.7 gi|119719711|ref|YP_920206.1| - 0.00014 21.1 11.6 0.0026 16.9 7.0 2.1 1 1 1 2 2 2 1 Reovirus sigma C capsid protein WXG100 PF06013.7 gi|119719711|ref|YP_920206.1| - 0.00065 19.6 4.6 0.36 10.8 0.2 3.6 2 2 2 4 4 4 1 Proteins of 100 residues with WXG GM_CSF PF01109.12 gi|119719711|ref|YP_920206.1| - 0.0011 18.9 0.8 0.0036 17.2 0.2 1.9 1 1 1 2 2 2 1 Granulocyte-macrophage colony-stimulating factor Prefoldin PF02996.12 gi|119719711|ref|YP_920206.1| - 0.0012 18.5 9.0 3.1 7.4 0.1 4.1 2 2 2 4 4 4 0 Prefoldin subunit FH2 PF02181.18 gi|119719711|ref|YP_920206.1| - 0.0014 17.5 10.9 0.01 14.7 0.7 2.1 1 1 2 3 3 3 3 Formin Homology 2 Domain DUF1664 PF07889.7 gi|119719711|ref|YP_920206.1| - 0.002 17.8 8.0 0.049 13.4 2.1 3.3 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|119719711|ref|YP_920206.1| - 0.0032 17.6 12.5 1.1 9.5 0.1 4.1 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|119719711|ref|YP_920206.1| - 0.0033 15.9 8.5 0.16 10.3 0.1 2.0 1 1 1 2 2 2 2 AAA domain SlyX PF04102.7 gi|119719711|ref|YP_920206.1| - 0.004 17.4 13.0 0.22 11.8 0.1 3.8 2 2 1 3 3 3 2 SlyX DUF4635 PF15466.1 gi|119719711|ref|YP_920206.1| - 0.0046 16.2 7.9 0.066 12.5 0.1 3.5 3 2 0 4 4 3 1 Domain of unknown function (DUF4635) Filament PF00038.16 gi|119719711|ref|YP_920206.1| - 0.0053 16.2 10.7 0.15 11.4 0.1 2.2 1 1 1 2 2 2 1 Intermediate filament protein CCDC-167 PF15188.1 gi|119719711|ref|YP_920206.1| - 0.0095 15.8 0.5 0.0095 15.8 0.3 3.1 1 1 2 3 3 3 1 Coiled-coil domain-containing protein 167 SF-assemblin PF06705.6 gi|119719711|ref|YP_920206.1| - 0.011 14.9 7.0 0.024 13.7 3.6 2.0 1 1 1 2 2 2 0 SF-assemblin/beta giardin Bacillus_HBL PF05791.6 gi|119719711|ref|YP_920206.1| - 0.011 15.0 6.1 0.18 11.1 0.4 2.4 1 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) ATP-synt_B PF00430.13 gi|119719711|ref|YP_920206.1| - 0.013 15.2 5.0 0.016 14.9 0.3 2.3 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) FlaC_arch PF05377.6 gi|119719711|ref|YP_920206.1| - 0.013 15.3 13.7 0.47 10.3 0.2 4.4 2 2 1 4 4 4 0 Flagella accessory protein C (FlaC) Surfac_D-trimer PF09006.6 gi|119719711|ref|YP_920206.1| - 0.014 15.1 2.6 2.4 7.9 0.0 4.3 3 2 1 4 4 3 0 Lung surfactant protein D coiled-coil trimerisation Spc7 PF08317.6 gi|119719711|ref|YP_920206.1| - 0.014 14.0 13.7 0.29 9.7 0.1 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF1640 PF07798.6 gi|119719711|ref|YP_920206.1| - 0.019 14.9 13.9 0.026 14.5 1.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Rootletin PF15035.1 gi|119719711|ref|YP_920206.1| - 0.022 14.7 0.6 0.022 14.7 0.4 2.9 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Tweety PF04906.8 gi|119719711|ref|YP_920206.1| - 0.027 12.8 6.6 3.3 6.0 3.9 2.3 1 1 0 1 1 1 0 Tweety CHDCT2 PF08074.6 gi|119719711|ref|YP_920206.1| - 0.031 14.0 2.0 0.071 12.8 0.3 2.1 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain Snapin_Pallidin PF14712.1 gi|119719711|ref|YP_920206.1| - 0.039 14.2 16.0 1.7 9.0 3.6 3.8 1 1 2 3 3 3 0 Snapin/Pallidin COG2 PF06148.6 gi|119719711|ref|YP_920206.1| - 0.044 13.6 12.9 0.91 9.4 5.0 3.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HrpB7 PF09486.5 gi|119719711|ref|YP_920206.1| - 0.045 13.6 0.2 0.045 13.6 0.1 2.1 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) YjcZ PF13990.1 gi|119719711|ref|YP_920206.1| - 0.059 12.5 13.0 0.11 11.5 3.0 2.9 1 1 2 3 3 3 0 YjcZ-like protein RasGAP_C PF03836.10 gi|119719711|ref|YP_920206.1| - 0.087 12.5 4.2 0.15 11.7 0.0 2.7 1 1 1 3 3 3 0 RasGAP C-terminus Fib_alpha PF08702.5 gi|119719711|ref|YP_920206.1| - 0.15 12.1 8.3 1.5 8.9 3.5 2.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF948 PF06103.6 gi|119719711|ref|YP_920206.1| - 0.17 11.7 11.4 0.32 10.8 2.0 3.4 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) zf-ZPR1 PF03367.8 gi|119719711|ref|YP_920206.1| - 0.21 10.7 6.4 2.2 7.4 0.2 2.8 1 1 2 3 3 3 0 ZPR1 zinc-finger domain TBPIP PF07106.8 gi|119719711|ref|YP_920206.1| - 0.23 10.9 13.1 0.53 9.8 1.4 2.9 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Vps51 PF08700.6 gi|119719711|ref|YP_920206.1| - 0.25 11.2 8.0 1.8 8.4 0.1 3.7 4 1 0 4 4 3 0 Vps51/Vps67 Img2 PF05046.9 gi|119719711|ref|YP_920206.1| - 0.26 11.5 1.6 5.3 7.3 1.1 2.8 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) UPF0184 PF03670.8 gi|119719711|ref|YP_920206.1| - 0.26 11.4 0.1 0.26 11.4 0.1 3.1 2 1 2 4 4 4 0 Uncharacterised protein family (UPF0184) Syntaxin PF00804.20 gi|119719711|ref|YP_920206.1| - 0.3 11.2 11.1 5.9 7.1 0.2 3.4 1 1 1 2 2 2 0 Syntaxin Mnd1 PF03962.10 gi|119719711|ref|YP_920206.1| - 0.34 10.5 9.5 0.14 11.7 0.3 2.4 1 1 0 2 2 2 0 Mnd1 family Dor1 PF04124.7 gi|119719711|ref|YP_920206.1| - 0.34 9.3 11.3 0.065 11.6 4.3 1.9 1 1 1 2 2 2 0 Dor1-like family Allexi_40kDa PF05549.6 gi|119719711|ref|YP_920206.1| - 0.38 10.0 8.9 0.23 10.7 3.1 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein YscO PF07321.7 gi|119719711|ref|YP_920206.1| - 0.42 10.4 8.9 0.99 9.2 0.1 2.3 2 0 0 2 2 2 0 Type III secretion protein YscO DUF724 PF05266.9 gi|119719711|ref|YP_920206.1| - 0.45 10.1 5.7 1.1 8.7 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF724) ADIP PF11559.3 gi|119719711|ref|YP_920206.1| - 0.49 10.2 12.9 0.75 9.6 0.1 2.9 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding Laminin_II PF06009.7 gi|119719711|ref|YP_920206.1| - 0.69 9.6 13.7 0.78 9.4 3.3 2.9 1 1 1 2 2 2 0 Laminin Domain II DUF883 PF05957.8 gi|119719711|ref|YP_920206.1| - 0.79 10.1 4.3 3.2 8.2 0.0 2.8 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Muted PF14942.1 gi|119719711|ref|YP_920206.1| - 0.8 9.5 12.0 6 6.7 2.7 3.0 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein DUF4239 PF14023.1 gi|119719711|ref|YP_920206.1| - 0.84 8.9 4.3 1.3 8.3 2.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) Occludin_ELL PF07303.8 gi|119719711|ref|YP_920206.1| - 0.88 10.3 8.5 18 6.1 0.2 3.4 1 1 3 4 4 4 0 Occludin homology domain Cytochrom_B562 PF07361.6 gi|119719711|ref|YP_920206.1| - 0.88 10.0 6.0 5.9 7.3 1.1 2.5 1 1 1 2 2 2 0 Cytochrome b562 DUF972 PF06156.8 gi|119719711|ref|YP_920206.1| - 0.92 9.8 16.3 2.4 8.5 0.5 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF972) HisKA_3 PF07730.8 gi|119719711|ref|YP_920206.1| - 0.94 9.8 6.4 6.6 7.1 0.1 3.4 1 1 2 3 3 3 0 Histidine kinase PEP-utilisers_N PF05524.8 gi|119719711|ref|YP_920206.1| - 1.5 8.6 7.3 0.59 9.9 1.3 3.0 1 1 2 3 3 2 0 PEP-utilising enzyme, N-terminal DUF3708 PF12501.3 gi|119719711|ref|YP_920206.1| - 1.6 8.5 6.6 13 5.6 1.6 2.2 1 1 1 2 2 2 0 Phosphate ATP-binding cassette transporter DASH_Dad4 PF08650.5 gi|119719711|ref|YP_920206.1| - 1.7 8.5 5.9 18 5.3 0.1 3.9 1 1 2 4 4 4 0 DASH complex subunit Dad4 Nnf1 PF03980.9 gi|119719711|ref|YP_920206.1| - 1.9 8.5 10.0 1.3 9.0 0.1 3.5 3 1 0 3 3 2 0 Nnf1 FUSC PF04632.7 gi|119719711|ref|YP_920206.1| - 1.9 6.7 5.6 0.37 9.1 0.2 1.8 1 1 1 2 2 2 0 Fusaric acid resistance protein family DUF489 PF04356.7 gi|119719711|ref|YP_920206.1| - 2.2 7.7 9.3 5.7 6.4 1.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) TMPIT PF07851.8 gi|119719711|ref|YP_920206.1| - 2.3 7.1 5.5 1.3 8.0 0.9 2.0 1 1 1 2 2 2 0 TMPIT-like protein GrpE PF01025.14 gi|119719711|ref|YP_920206.1| - 2.5 7.6 8.5 0.17 11.4 1.7 1.9 1 1 1 2 2 2 0 GrpE DUF4200 PF13863.1 gi|119719711|ref|YP_920206.1| - 9.1 6.2 13.3 12 5.8 2.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) V-SNARE PF05008.10 gi|119719712|ref|YP_920207.1| - 0.16 12.1 2.0 0.9 9.7 1.3 1.8 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus T2SF PF00482.18 gi|119719714|ref|YP_920209.1| - 1.7e-12 47.3 1.5 1.7e-12 47.3 1.1 1.8 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF3429 PF11911.3 gi|119719714|ref|YP_920209.1| - 3.8 7.4 10.9 0.72 9.8 3.7 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3429) zf-ribbon_3 PF13248.1 gi|119719716|ref|YP_920211.1| - 1.6e-05 23.9 16.0 0.43 9.8 0.1 4.6 4 1 0 4 4 4 3 zinc-ribbon domain DZR PF12773.2 gi|119719716|ref|YP_920211.1| - 1.8e-05 24.4 12.4 0.027 14.2 1.1 3.0 2 1 1 3 3 3 2 Double zinc ribbon DUF35_N PF12172.3 gi|119719716|ref|YP_920211.1| - 0.00039 20.2 17.1 0.00071 19.4 1.2 2.9 3 0 0 3 3 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.14 gi|119719716|ref|YP_920211.1| - 0.00059 19.5 6.4 0.013 15.3 0.7 2.5 2 0 0 2 2 2 1 Ribosomal protein L37e UPF0547 PF10571.4 gi|119719716|ref|YP_920211.1| - 0.0012 18.5 13.7 0.11 12.1 0.2 4.5 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 FYVE PF01363.16 gi|119719716|ref|YP_920211.1| - 0.0019 18.0 8.4 0.0079 16.0 0.1 2.7 2 1 0 2 2 2 1 FYVE zinc finger zinc-ribbons_6 PF07191.7 gi|119719716|ref|YP_920211.1| - 0.0021 17.8 5.8 0.055 13.2 1.1 2.5 2 0 0 2 2 2 1 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|119719716|ref|YP_920211.1| - 0.0031 17.4 18.7 5.6 6.9 0.1 5.3 3 2 2 5 5 5 0 Zinc ribbon domain HypA PF01155.14 gi|119719716|ref|YP_920211.1| - 0.0038 16.9 11.4 0.073 12.7 0.7 3.7 1 1 2 3 3 3 2 Hydrogenase expression/synthesis hypA family Rep_fac-A_C PF08646.5 gi|119719716|ref|YP_920211.1| - 0.0052 16.5 1.7 0.13 11.9 1.2 2.4 1 1 0 1 1 1 1 Replication factor-A C terminal domain RNA_POL_M_15KD PF02150.11 gi|119719716|ref|YP_920211.1| - 0.031 13.9 13.4 0.074 12.7 0.0 4.1 3 1 1 4 4 4 0 RNA polymerases M/15 Kd subunit Terminase_GpA PF05876.7 gi|119719716|ref|YP_920211.1| - 0.037 12.3 0.5 0.057 11.7 0.4 1.3 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) C1_1 PF00130.17 gi|119719716|ref|YP_920211.1| - 0.11 12.2 8.1 0.98 9.1 0.2 3.1 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1610 PF07754.6 gi|119719716|ref|YP_920211.1| - 0.13 12.3 0.6 0.13 12.3 0.4 5.5 6 0 0 6 6 5 0 Domain of unknown function (DUF1610) zinc_ribbon_4 PF13717.1 gi|119719716|ref|YP_920211.1| - 0.13 11.9 14.9 1.6 8.4 0.2 5.6 6 0 0 6 6 5 0 zinc-ribbon domain HflK_N PF12221.3 gi|119719716|ref|YP_920211.1| - 0.23 11.2 0.9 0.41 10.4 0.1 1.8 2 0 0 2 2 1 0 Bacterial membrane protein N terminal DUF164 PF02591.10 gi|119719716|ref|YP_920211.1| - 0.59 10.0 5.8 11 5.9 0.0 4.0 4 0 0 4 4 4 0 Putative zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|119719716|ref|YP_920211.1| - 0.94 9.3 9.4 8.7 6.2 1.2 3.6 1 1 0 3 3 3 0 Ribosomal L37ae protein family DnaJ_CXXCXGXG PF00684.14 gi|119719716|ref|YP_920211.1| - 0.99 9.4 7.8 5.2 7.1 0.1 2.7 2 1 0 2 2 2 0 DnaJ central domain zf-Di19 PF05605.7 gi|119719716|ref|YP_920211.1| - 1.2 9.3 10.1 0.84 9.8 1.5 3.7 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|119719716|ref|YP_920211.1| - 1.6 9.2 18.8 7.9 7.0 0.2 5.2 4 1 1 5 5 5 0 Zinc finger, C2H2 type DNA_ligase_ZBD PF03119.11 gi|119719716|ref|YP_920211.1| - 1.9 8.2 12.1 0.84 9.3 0.1 3.7 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|119719716|ref|YP_920211.1| - 2.3 8.3 13.3 16 5.6 0.2 4.7 4 1 1 5 5 5 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|119719716|ref|YP_920211.1| - 2.5 7.9 14.6 6.3 6.6 0.8 4.1 2 2 2 5 5 5 0 Prokaryotic RING finger family 1 Cys_rich_KTR PF14205.1 gi|119719716|ref|YP_920211.1| - 2.8 7.4 6.4 16 5.0 0.2 3.2 3 0 0 3 3 3 0 Cysteine-rich KTR zinc_ribbon_5 PF13719.1 gi|119719716|ref|YP_920211.1| - 3.3 7.3 20.2 1.3 8.6 0.2 5.6 5 1 0 6 6 5 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119719716|ref|YP_920211.1| - 3.6 7.1 25.2 6.9 6.2 0.1 4.7 3 2 2 5 5 5 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|119719716|ref|YP_920211.1| - 3.8 7.7 5.8 1.7 8.9 0.0 3.2 4 0 0 4 4 2 0 Ribosomal L32p protein family DUF3797 PF12677.2 gi|119719716|ref|YP_920211.1| - 4 7.1 9.1 2.6 7.7 0.1 3.6 4 0 0 4 4 3 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1 PF03811.8 gi|119719716|ref|YP_920211.1| - 4.8 6.7 13.4 7.4 6.1 0.1 3.6 3 1 0 3 3 3 0 InsA N-terminal domain Elf1 PF05129.8 gi|119719716|ref|YP_920211.1| - 4.8 6.9 11.5 2.6 7.8 1.9 3.7 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-C4_Topoisom PF01396.14 gi|119719716|ref|YP_920211.1| - 5.4 6.5 13.2 2.3 7.8 0.4 3.8 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger C1_4 PF07975.7 gi|119719716|ref|YP_920211.1| - 6.3 6.8 11.6 4 7.5 0.3 3.7 3 2 0 3 3 3 0 TFIIH C1-like domain zf-Mss51 PF13824.1 gi|119719716|ref|YP_920211.1| - 7.7 6.4 12.0 19 5.2 2.4 3.3 2 2 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.6 gi|119719716|ref|YP_920211.1| - 8.6 6.1 16.8 3.6 7.3 1.4 4.0 1 1 4 5 5 5 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|119719716|ref|YP_920211.1| - 10 5.5 18.6 0.58 9.5 0.1 4.4 3 1 0 3 3 2 0 TFIIB zinc-binding T2SE PF00437.15 gi|119719717|ref|YP_920212.1| - 1.6e-53 181.3 0.0 2.4e-53 180.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|119719717|ref|YP_920212.1| - 0.0075 15.7 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|119719717|ref|YP_920212.1| - 0.0093 15.4 0.1 0.11 12.0 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|119719717|ref|YP_920212.1| - 0.024 13.7 0.0 0.053 12.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|119719717|ref|YP_920212.1| - 0.051 13.8 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.1 gi|119719717|ref|YP_920212.1| - 0.086 13.6 0.0 0.74 10.6 0.0 2.5 3 0 0 3 3 3 0 AAA domain Met_10 PF02475.11 gi|119719718|ref|YP_920213.1| - 1.2e-65 220.8 0.0 1.5e-65 220.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.11 gi|119719718|ref|YP_920213.1| - 5.2e-06 25.6 0.0 7.4e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|119719718|ref|YP_920213.1| - 8.4e-06 25.4 0.0 1.3e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|119719718|ref|YP_920213.1| - 3e-05 24.0 0.0 5.5e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719718|ref|YP_920213.1| - 0.00014 22.4 0.0 0.00025 21.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|119719718|ref|YP_920213.1| - 0.0019 17.3 0.0 0.0029 16.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PRMT5 PF05185.11 gi|119719718|ref|YP_920213.1| - 0.023 13.6 0.1 0.037 12.9 0.1 1.3 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_11 PF08241.7 gi|119719718|ref|YP_920213.1| - 0.031 14.7 0.0 5.7 7.5 0.0 3.2 2 1 0 2 2 2 0 Methyltransferase domain PGM_PMM_I PF02878.11 gi|119719719|ref|YP_920214.1| - 2.6e-24 85.2 0.0 5e-24 84.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|119719719|ref|YP_920214.1| - 1.5e-22 79.8 0.0 3e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|119719719|ref|YP_920214.1| - 9.3e-16 57.8 0.0 1.7e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|119719719|ref|YP_920214.1| - 4.1e-12 45.9 1.1 6.1e-12 45.3 0.2 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain AlkA_N PF06029.6 gi|119719719|ref|YP_920214.1| - 0.037 14.0 0.0 0.088 12.8 0.0 1.6 1 0 0 1 1 1 0 AlkA N-terminal domain EFG_II PF14492.1 gi|119719719|ref|YP_920214.1| - 0.058 13.2 0.1 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Elongation Factor G, domain II DUF2218 PF09981.4 gi|119719719|ref|YP_920214.1| - 0.063 13.4 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) ATP-synt_F PF01990.12 gi|119719720|ref|YP_920215.1| - 1.3e-05 25.5 0.0 1.6e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF883 PF05957.8 gi|119719721|ref|YP_920216.1| - 0.0045 17.3 15.5 0.18 12.1 2.7 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) RRF PF01765.14 gi|119719721|ref|YP_920216.1| - 0.017 14.5 8.0 0.02 14.3 5.5 1.1 1 0 0 1 1 1 0 Ribosome recycling factor ThiS PF02597.15 gi|119719721|ref|YP_920216.1| - 0.02 15.2 2.7 0.02 15.2 1.9 2.2 1 1 1 2 2 2 0 ThiS family HrpE PF06188.7 gi|119719721|ref|YP_920216.1| - 0.038 13.7 14.2 0.21 11.3 9.9 1.9 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G PF03179.10 gi|119719721|ref|YP_920216.1| - 0.04 14.2 15.3 0.048 13.9 10.6 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit MEDS PF14417.1 gi|119719721|ref|YP_920216.1| - 0.043 12.8 2.7 0.057 12.4 1.9 1.2 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Fib_alpha PF08702.5 gi|119719721|ref|YP_920216.1| - 0.13 12.4 6.9 0.17 12.0 4.8 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FH2 PF02181.18 gi|119719721|ref|YP_920216.1| - 0.14 11.0 4.6 0.18 10.6 3.2 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain CRISPR_Cse1 PF09481.5 gi|119719721|ref|YP_920216.1| - 0.15 10.7 5.5 0.18 10.5 3.8 1.0 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) HisKA_3 PF07730.8 gi|119719721|ref|YP_920216.1| - 0.19 12.1 10.5 2.2 8.7 0.5 2.2 2 0 0 2 2 2 0 Histidine kinase PqqD PF05402.7 gi|119719721|ref|YP_920216.1| - 0.32 11.0 4.8 0.13 12.2 0.4 2.1 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) DUF4071 PF13281.1 gi|119719721|ref|YP_920216.1| - 0.33 9.7 5.6 0.39 9.5 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) Mitofilin PF09731.4 gi|119719721|ref|YP_920216.1| - 0.35 9.4 19.5 0.41 9.2 13.5 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DivIVA PF05103.8 gi|119719721|ref|YP_920216.1| - 0.5 10.4 16.9 0.54 10.3 7.6 2.2 1 1 1 2 2 2 0 DivIVA protein DUF87 PF01935.12 gi|119719721|ref|YP_920216.1| - 1 9.1 4.0 1.2 8.9 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 Exonuc_VII_L PF02601.10 gi|119719721|ref|YP_920216.1| - 1.1 8.3 7.8 1.3 8.1 5.4 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit EURL PF06937.6 gi|119719721|ref|YP_920216.1| - 1.2 8.4 6.5 1.3 8.4 4.5 1.1 1 0 0 1 1 1 0 EURL protein Rota_VP2 PF05087.7 gi|119719721|ref|YP_920216.1| - 1.3 6.8 4.2 1.3 6.8 2.9 1.0 1 0 0 1 1 1 0 Rotavirus VP2 protein AAA_23 PF13476.1 gi|119719721|ref|YP_920216.1| - 1.4 9.2 10.9 2.1 8.6 7.6 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_B PF00430.13 gi|119719721|ref|YP_920216.1| - 1.6 8.4 21.6 5 6.9 15.0 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) CCDC-167 PF15188.1 gi|119719721|ref|YP_920216.1| - 1.6 8.6 14.8 7.3 6.6 10.3 1.9 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 Stathmin PF00836.14 gi|119719721|ref|YP_920216.1| - 1.7 8.2 18.3 0.1 12.2 6.8 2.0 1 1 1 2 2 2 0 Stathmin family Aldedh PF00171.17 gi|119719721|ref|YP_920216.1| - 1.9 6.7 5.4 2 6.6 3.7 1.0 1 0 0 1 1 1 0 Aldehyde dehydrogenase family DUF342 PF03961.8 gi|119719721|ref|YP_920216.1| - 1.9 6.8 8.9 2.2 6.5 6.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) IncA PF04156.9 gi|119719721|ref|YP_920216.1| - 1.9 8.0 16.9 2.4 7.7 11.7 1.1 1 0 0 1 1 1 0 IncA protein Pinin_SDK_memA PF04696.8 gi|119719721|ref|YP_920216.1| - 2.1 7.9 13.0 3.1 7.4 9.0 1.2 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region Peptidase_M41 PF01434.13 gi|119719721|ref|YP_920216.1| - 2.5 7.5 6.7 1.1 8.6 1.6 1.6 1 1 1 2 2 2 0 Peptidase family M41 HSP70 PF00012.15 gi|119719721|ref|YP_920216.1| - 2.6 5.8 8.1 2.9 5.6 5.6 1.0 1 0 0 1 1 1 0 Hsp70 protein SpaB_C PF14028.1 gi|119719721|ref|YP_920216.1| - 2.6 7.5 7.2 3.1 7.2 5.0 1.0 1 0 0 1 1 1 0 SpaB C-terminal domain DUF3391 PF11871.3 gi|119719721|ref|YP_920216.1| - 3.1 8.0 10.3 1.3e+02 2.8 7.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) Orbi_VP5 PF00901.12 gi|119719721|ref|YP_920216.1| - 3.9 5.5 12.1 4.1 5.4 8.4 1.0 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 RapA_C PF12137.3 gi|119719721|ref|YP_920216.1| - 3.9 6.2 12.7 4.6 5.9 8.8 1.0 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal ISG65-75 PF11727.3 gi|119719721|ref|YP_920216.1| - 4.4 6.2 8.6 7.3 5.5 5.8 1.4 1 1 0 1 1 1 0 Invariant surface glycoprotein GST_C PF00043.20 gi|119719721|ref|YP_920216.1| - 4.9 7.2 7.4 1.5e+02 2.4 5.1 2.4 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain Rotamase PF00639.16 gi|119719721|ref|YP_920216.1| - 5.7 7.7 8.3 22 5.8 5.7 1.9 1 1 0 1 1 1 0 PPIC-type PPIASE domain Atg14 PF10186.4 gi|119719721|ref|YP_920216.1| - 6 5.7 12.4 7.1 5.4 8.6 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Pox_A_type_inc PF04508.7 gi|119719721|ref|YP_920216.1| - 9.4 6.3 12.4 1.3 8.9 0.4 3.9 2 1 1 3 3 3 0 Viral A-type inclusion protein repeat vATP-synt_E PF01991.13 gi|119719722|ref|YP_920217.1| - 1.2e-16 60.6 10.7 1.5e-16 60.2 7.4 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|119719722|ref|YP_920217.1| - 1.4e-06 28.1 6.2 1.9e-06 27.7 4.3 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E CaM_binding PF07839.6 gi|119719722|ref|YP_920217.1| - 0.00032 20.8 4.7 0.00072 19.7 3.2 1.6 1 0 0 1 1 1 1 Plant calmodulin-binding domain DUF3552 PF12072.3 gi|119719722|ref|YP_920217.1| - 0.0029 16.8 14.1 0.0053 16.0 9.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|119719722|ref|YP_920217.1| - 0.028 14.4 9.6 0.028 14.4 6.7 1.9 2 1 0 2 2 1 0 DivIVA protein RHD3 PF05879.7 gi|119719722|ref|YP_920217.1| - 0.042 11.7 4.6 0.054 11.4 3.2 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Phage_min_cap2 PF06152.6 gi|119719722|ref|YP_920217.1| - 0.062 12.2 5.7 1 8.2 2.7 2.1 1 1 1 2 2 2 0 Phage minor capsid protein 2 Endotoxin_N PF03945.9 gi|119719722|ref|YP_920217.1| - 0.073 12.4 0.7 0.1 11.9 0.5 1.2 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain Rotamase_2 PF13145.1 gi|119719722|ref|YP_920217.1| - 0.1 13.2 2.6 1.8 9.1 1.8 2.1 1 1 0 1 1 1 0 PPIC-type PPIASE domain FliG_N PF14842.1 gi|119719722|ref|YP_920217.1| - 0.11 12.5 6.4 1.1 9.4 3.4 2.4 1 1 1 2 2 2 0 FliG N-terminal domain BBS1 PF14779.1 gi|119719722|ref|YP_920217.1| - 0.12 11.3 0.4 0.15 10.9 0.3 1.2 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 1 PaaSYMP PF14738.1 gi|119719722|ref|YP_920217.1| - 0.14 11.8 12.2 0.26 11.0 8.4 1.5 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 DUF3095 PF11294.3 gi|119719722|ref|YP_920217.1| - 0.15 11.1 2.2 0.21 10.5 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) DUF2252 PF10009.4 gi|119719722|ref|YP_920217.1| - 0.18 10.6 3.2 0.24 10.2 2.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) DUF445 PF04286.7 gi|119719722|ref|YP_920217.1| - 0.44 10.0 9.1 0.55 9.7 6.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF445) RGS-like PF09128.6 gi|119719722|ref|YP_920217.1| - 0.56 9.6 4.8 0.77 9.2 2.8 1.6 2 0 0 2 2 2 0 Regulator of G protein signalling-like domain PP2C_C PF07830.8 gi|119719722|ref|YP_920217.1| - 0.84 9.7 7.7 1.7 8.8 2.4 2.9 2 1 1 3 3 3 0 Protein serine/threonine phosphatase 2C, C-terminal domain OmpH PF03938.9 gi|119719722|ref|YP_920217.1| - 1.7 8.5 11.7 3.2 7.6 8.1 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Phage_int_SAM_5 PF13102.1 gi|119719722|ref|YP_920217.1| - 2.5 8.0 7.2 4.3 7.3 4.9 1.4 1 1 0 1 1 1 0 Phage integrase SAM-like domain ATP-synt_F PF01990.12 gi|119719723|ref|YP_920218.1| - 0.0042 17.4 0.1 0.0049 17.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF2122 PF09895.4 gi|119719723|ref|YP_920218.1| - 0.029 14.5 0.2 0.035 14.2 0.2 1.1 1 0 0 1 1 1 0 RecB-family nuclease (DUF2122) Trm112p PF03966.11 gi|119719724|ref|YP_920219.1| - 1.4e-14 54.1 0.5 2e-14 53.6 0.3 1.2 1 0 0 1 1 1 1 Trm112p-like protein UPF0547 PF10571.4 gi|119719724|ref|YP_920219.1| - 0.089 12.5 2.6 0.24 11.1 1.8 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|119719724|ref|YP_920219.1| - 0.31 10.9 3.1 0.54 10.1 2.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|119719724|ref|YP_920219.1| - 1.1 8.5 4.8 0.46 9.7 1.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain tRNA-synt_1c PF00749.16 gi|119719725|ref|YP_920220.1| - 4.5e-77 258.7 0.0 5.6e-77 258.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|119719725|ref|YP_920220.1| - 1.3e-22 80.2 0.0 2.3e-22 79.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_2b PF00587.20 gi|119719726|ref|YP_920221.1| - 7.6e-24 84.2 0.4 7.6e-24 84.2 0.3 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|119719726|ref|YP_920221.1| - 2.8e-21 75.2 0.9 6.7e-21 74.0 0.2 2.0 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|119719726|ref|YP_920221.1| - 5.3e-16 58.2 0.3 1.3e-15 56.9 0.2 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Acetyltransf_1 PF00583.19 gi|119719727|ref|YP_920222.1| - 1.3e-19 69.9 0.1 2e-19 69.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|119719727|ref|YP_920222.1| - 1.2e-12 47.7 0.1 1.9e-12 47.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|119719727|ref|YP_920222.1| - 6.3e-11 42.4 0.0 7.6e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|119719727|ref|YP_920222.1| - 2.2e-09 37.3 0.0 2.7e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|119719727|ref|YP_920222.1| - 2.9e-09 36.5 0.1 4.5e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|119719727|ref|YP_920222.1| - 7.1e-09 35.7 0.0 9.4e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|119719727|ref|YP_920222.1| - 3.5e-08 33.3 0.0 2.3e-07 30.7 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|119719727|ref|YP_920222.1| - 3.7e-06 26.7 0.0 6.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|119719727|ref|YP_920222.1| - 9.1e-06 25.8 0.0 1.3e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|119719727|ref|YP_920222.1| - 8.8e-05 22.4 0.1 0.00013 21.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|119719727|ref|YP_920222.1| - 0.0023 17.5 0.1 0.0029 17.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FLO_LFY PF01698.11 gi|119719727|ref|YP_920222.1| - 0.15 10.9 1.1 0.25 10.1 0.7 1.3 1 0 0 1 1 1 0 Floricaula / Leafy protein Lactamase_B_2 PF12706.2 gi|119719728|ref|YP_920223.1| - 1.8e-24 86.3 0.0 2.2e-24 86.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|119719728|ref|YP_920223.1| - 5.5e-08 32.6 1.3 7.6e-08 32.2 0.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|119719728|ref|YP_920223.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AP_endonuc_2 PF01261.19 gi|119719729|ref|YP_920224.1| - 1e-28 100.0 0.3 1.4e-28 99.6 0.2 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|119719729|ref|YP_920224.1| - 0.021 14.3 0.2 2.6 7.6 0.0 3.4 4 0 0 4 4 4 0 AP endonuclease family 2 C terminus ADH_N PF08240.7 gi|119719730|ref|YP_920225.1| - 2.5e-31 107.6 0.3 5.7e-31 106.5 0.0 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|119719730|ref|YP_920225.1| - 1.7e-21 76.1 0.2 2.4e-21 75.6 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|119719730|ref|YP_920225.1| - 2.9e-05 24.9 0.2 7.3e-05 23.6 0.1 1.8 1 1 1 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|119719730|ref|YP_920225.1| - 0.00014 21.5 0.1 0.00024 20.6 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|119719730|ref|YP_920225.1| - 0.0073 15.4 0.3 0.017 14.2 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|119719730|ref|YP_920225.1| - 0.023 15.2 0.0 0.062 13.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Creatininase PF02633.9 gi|119719731|ref|YP_920226.1| - 1.1e-54 185.0 0.0 1.3e-54 184.8 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PAC2 PF09754.4 gi|119719731|ref|YP_920226.1| - 0.084 12.7 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 PAC2 family 2-Hacid_dh_C PF02826.14 gi|119719732|ref|YP_920227.1| - 3.5e-69 231.5 0.0 4.8e-69 231.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|119719732|ref|YP_920227.1| - 2e-39 134.1 0.0 2.3e-39 133.9 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|119719732|ref|YP_920227.1| - 1.2e-05 25.2 0.0 2.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|119719732|ref|YP_920227.1| - 0.0018 17.6 0.0 0.01 15.2 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|119719732|ref|YP_920227.1| - 0.0037 17.1 0.0 0.0066 16.3 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Shikimate_DH PF01488.15 gi|119719732|ref|YP_920227.1| - 0.0065 16.5 0.0 0.017 15.2 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase MMR_HSR1 PF01926.18 gi|119719733|ref|YP_920228.1| - 1.5e-16 60.3 0.0 3.3e-13 49.6 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|119719733|ref|YP_920228.1| - 2.3e-10 39.9 0.0 2.2e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|119719733|ref|YP_920228.1| - 2.2e-07 30.4 0.0 4.1e-06 26.3 0.0 2.6 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|119719733|ref|YP_920228.1| - 5.4e-05 23.0 1.5 0.031 14.0 0.3 2.9 2 1 1 3 3 3 1 Dynamin family DUF258 PF03193.11 gi|119719733|ref|YP_920228.1| - 0.0041 16.3 0.2 0.0088 15.2 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Arf PF00025.16 gi|119719733|ref|YP_920228.1| - 0.0085 15.3 0.0 0.14 11.3 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family cobW PF02492.14 gi|119719733|ref|YP_920228.1| - 0.011 15.1 0.2 0.056 12.8 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|119719733|ref|YP_920228.1| - 0.086 12.3 0.0 0.43 10.0 0.0 2.0 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|119719733|ref|YP_920228.1| - 0.095 12.6 0.0 8.7 6.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|119719733|ref|YP_920228.1| - 0.12 13.2 0.2 0.3 11.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|119719733|ref|YP_920228.1| - 0.16 12.3 0.0 0.38 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF1886 PF09171.5 gi|119719734|ref|YP_920229.1| - 1.2e-69 234.1 0.0 1.4e-69 233.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) PGM_PMM_I PF02878.11 gi|119719735|ref|YP_920230.1| - 3.2e-15 55.8 0.0 9.9e-15 54.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|119719735|ref|YP_920230.1| - 1.6e-06 28.1 0.0 4.2e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|119719735|ref|YP_920230.1| - 1.8e-06 28.2 0.0 4.6e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NTP_transferase PF00483.18 gi|119719736|ref|YP_920231.1| - 1.4e-40 139.1 0.0 1.7e-40 138.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|119719736|ref|YP_920231.1| - 5.1e-15 54.2 12.3 3.4e-06 26.3 1.3 3.8 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|119719736|ref|YP_920231.1| - 6.1e-13 49.1 0.0 8.3e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|119719736|ref|YP_920231.1| - 0.0011 18.4 13.5 0.1 12.1 2.6 4.1 2 1 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase DUF92 PF01940.11 gi|119719738|ref|YP_920233.1| - 3.1e-59 199.8 13.2 3.9e-59 199.5 9.1 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 DUF1610 PF07754.6 gi|119719738|ref|YP_920233.1| - 0.58 10.3 2.8 0.6 10.2 0.3 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) NfeD PF01957.13 gi|119719739|ref|YP_920234.1| - 6.1e-23 81.5 6.0 6.1e-23 81.5 4.1 2.7 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.11 gi|119719739|ref|YP_920234.1| - 0.00016 20.5 0.0 0.00027 19.8 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase TMEM154 PF15102.1 gi|119719739|ref|YP_920234.1| - 0.18 11.5 1.2 0.39 10.4 0.8 1.5 1 0 0 1 1 1 0 TMEM154 protein family DUF3883 PF13020.1 gi|119719740|ref|YP_920235.1| - 0.1 12.3 0.1 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) Band_7 PF01145.20 gi|119719741|ref|YP_920236.1| - 9.9e-33 113.5 10.9 3.3e-32 111.8 7.6 1.8 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|119719741|ref|YP_920236.1| - 0.0014 18.1 0.3 0.0038 16.7 0.0 1.9 3 0 0 3 3 3 1 SPFH domain-Band 7 family Bactofilin PF04519.8 gi|119719742|ref|YP_920237.1| - 7.2e-14 51.6 11.9 1.2e-08 34.8 2.4 3.4 2 1 2 4 4 4 4 Polymer-forming cytoskeletal Pentapeptide_3 PF13576.1 gi|119719742|ref|YP_920237.1| - 0.02 14.7 0.6 0.32 10.9 0.8 2.4 2 1 0 2 2 2 0 Pentapeptide repeats (9 copies) DUF3672 PF12421.3 gi|119719742|ref|YP_920237.1| - 0.029 14.5 6.0 0.8 9.8 0.4 3.6 2 1 1 3 3 3 0 Fibronectin type III protein Ribosomal_S13_N PF08069.7 gi|119719743|ref|YP_920238.1| - 0.086 12.6 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain Mago_nashi PF02792.9 gi|119719743|ref|YP_920238.1| - 0.12 12.0 0.1 0.12 12.0 0.1 1.0 1 0 0 1 1 1 0 Mago nashi protein Prefoldin PF02996.12 gi|119719743|ref|YP_920238.1| - 0.13 11.9 0.5 0.15 11.7 0.4 1.0 1 0 0 1 1 1 0 Prefoldin subunit Ycf66_N PF07444.6 gi|119719744|ref|YP_920239.1| - 0.062 13.0 0.7 0.09 12.5 0.5 1.2 1 0 0 1 1 1 0 Ycf66 protein N-terminus DUF3792 PF12670.2 gi|119719744|ref|YP_920239.1| - 0.13 12.1 3.5 0.16 11.8 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) HTH_5 PF01022.15 gi|119719745|ref|YP_920240.1| - 6.1e-11 41.8 0.1 1.4e-10 40.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|119719745|ref|YP_920240.1| - 4.4e-08 32.8 0.0 6.3e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|119719745|ref|YP_920240.1| - 3.1e-05 23.5 0.5 5.3e-05 22.8 0.2 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|119719745|ref|YP_920240.1| - 0.00035 20.2 1.1 0.0012 18.5 0.8 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|119719745|ref|YP_920240.1| - 0.0032 17.4 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|119719745|ref|YP_920240.1| - 0.018 14.4 0.1 0.12 11.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|119719745|ref|YP_920240.1| - 0.037 14.1 0.1 0.82 9.8 0.0 2.2 2 1 0 2 2 2 0 Transcriptional regulator DeoC PF01791.4 gi|119719746|ref|YP_920241.1| - 1.9e-30 105.9 0.1 2.4e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|119719746|ref|YP_920241.1| - 2.8e-06 26.7 0.0 6.3e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.19 gi|119719746|ref|YP_920241.1| - 0.0016 17.9 0.3 0.0027 17.1 0.2 1.4 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|119719746|ref|YP_920241.1| - 0.026 13.6 0.4 5.3 6.1 0.0 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI Pilus_CpaD PF09476.5 gi|119719746|ref|YP_920241.1| - 0.039 13.4 0.1 0.059 12.8 0.1 1.4 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Cyclophil_like PF04126.8 gi|119719747|ref|YP_920242.1| - 2e-48 162.9 0.0 2.2e-48 162.8 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DUF35 PF01796.12 gi|119719747|ref|YP_920242.1| - 0.017 15.3 0.3 0.017 15.3 0.2 2.1 2 1 0 2 2 2 0 DUF35 OB-fold domain AP_endonuc_2 PF01261.19 gi|119719748|ref|YP_920243.1| - 6.9e-15 54.9 0.0 1.9e-14 53.4 0.0 1.6 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Mem_trans PF03547.13 gi|119719749|ref|YP_920244.1| - 1.6e-09 36.5 14.7 2e-08 32.9 4.3 2.1 1 1 1 2 2 2 2 Membrane transport protein NRPS PF08415.5 gi|119719749|ref|YP_920244.1| - 0.018 14.7 1.4 0.059 13.1 0.2 2.3 2 0 0 2 2 2 0 Nonribosomal peptide synthase Asparaginase_2 PF01112.13 gi|119719750|ref|YP_920245.1| - 3.3e-77 259.3 0.3 4.3e-77 258.9 0.2 1.1 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.19 gi|119719750|ref|YP_920245.1| - 0.026 14.1 0.2 0.05 13.1 0.0 1.5 2 0 0 2 2 2 0 Metallopeptidase family M24 ELFV_dehydrog PF00208.16 gi|119719752|ref|YP_920247.1| - 1.2e-73 247.6 4.7 1.7e-73 247.2 3.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|119719752|ref|YP_920247.1| - 2.1e-53 179.3 0.0 3.4e-53 178.7 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|119719752|ref|YP_920247.1| - 8.1e-05 21.8 0.1 0.00014 21.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|119719752|ref|YP_920247.1| - 0.0026 18.0 0.2 0.0061 16.8 0.1 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.9 gi|119719752|ref|YP_920247.1| - 0.0055 16.6 0.3 0.0098 15.7 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|119719752|ref|YP_920247.1| - 0.0085 15.6 2.1 0.025 14.1 1.5 1.9 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|119719752|ref|YP_920247.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.15 gi|119719752|ref|YP_920247.1| - 0.046 13.8 1.1 0.17 12.0 0.8 1.9 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|119719752|ref|YP_920247.1| - 0.066 12.8 0.7 0.12 11.9 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|119719752|ref|YP_920247.1| - 0.13 12.0 0.9 0.28 11.0 0.4 1.6 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Thi4 PF01946.12 gi|119719752|ref|YP_920247.1| - 0.18 10.8 2.9 1.9 7.5 2.0 2.3 1 1 0 1 1 1 0 Thi4 family DUF3868 PF12984.2 gi|119719753|ref|YP_920248.1| - 0.032 13.7 0.0 4.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3868) Pyridox_ox_2 PF12900.2 gi|119719753|ref|YP_920248.1| - 0.052 13.3 0.1 0.35 10.6 0.0 2.0 1 1 1 2 2 2 0 Pyridoxamine 5'-phosphate oxidase DUF11 PF01345.13 gi|119719753|ref|YP_920248.1| - 0.39 10.7 4.2 0.1 12.6 0.5 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF11 DUF2208 PF09973.4 gi|119719755|ref|YP_920250.1| - 4.3e-76 255.2 5.6 4.8e-76 255.0 3.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF4131 PF13567.1 gi|119719755|ref|YP_920250.1| - 9.7e-06 25.1 1.3 0.023 14.1 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4131) TMEM220 PF15071.1 gi|119719755|ref|YP_920250.1| - 0.26 11.7 3.2 0.23 11.9 0.4 2.1 1 1 0 2 2 2 0 Transmembrane family 220, helix DUF2142 PF09913.4 gi|119719755|ref|YP_920250.1| - 0.39 9.3 7.8 0.97 8.0 5.4 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) MARVEL PF01284.18 gi|119719755|ref|YP_920250.1| - 1.1 9.1 9.8 0.56 10.0 0.6 2.3 2 0 0 2 2 2 0 Membrane-associating domain MIG-14_Wnt-bd PF06664.7 gi|119719755|ref|YP_920250.1| - 1.8 7.3 9.3 6.5 5.4 6.4 1.8 1 1 0 1 1 1 0 Wnt-binding factor required for Wnt secretion DUF3634 PF12321.3 gi|119719755|ref|YP_920250.1| - 1.8 8.5 3.8 18 5.3 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3634) RseC_MucC PF04246.7 gi|119719755|ref|YP_920250.1| - 4.4 6.8 12.3 1.5 8.4 1.1 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Methyltransf_26 PF13659.1 gi|119719756|ref|YP_920251.1| - 2e-13 50.3 0.1 2.8e-13 49.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119719756|ref|YP_920251.1| - 4e-10 39.3 0.0 4.7e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|119719756|ref|YP_920251.1| - 7.6e-08 32.9 0.0 9.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|119719756|ref|YP_920251.1| - 5.4e-05 22.4 0.1 6.6e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|119719756|ref|YP_920251.1| - 5.9e-05 22.7 0.0 8.6e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|119719756|ref|YP_920251.1| - 6.9e-05 22.4 0.0 8.2e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|119719756|ref|YP_920251.1| - 0.00045 20.6 0.1 0.0013 19.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|119719756|ref|YP_920251.1| - 0.0046 16.5 0.0 0.0055 16.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|119719756|ref|YP_920251.1| - 0.0087 15.7 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119719756|ref|YP_920251.1| - 0.055 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|119719756|ref|YP_920251.1| - 0.062 12.8 0.0 0.08 12.4 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|119719756|ref|YP_920251.1| - 0.065 13.6 0.0 0.087 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|119719756|ref|YP_920251.1| - 0.075 12.4 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA-synt_2 PF00152.15 gi|119719757|ref|YP_920252.1| - 3.6e-80 269.2 0.0 5e-80 268.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|119719757|ref|YP_920252.1| - 2.3e-12 46.5 0.1 4.4e-12 45.6 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2b PF00587.20 gi|119719757|ref|YP_920252.1| - 0.1 12.2 0.0 14 5.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) FeoA PF04023.9 gi|119719758|ref|YP_920253.1| - 3.2e-15 55.8 1.3 3.6e-15 55.6 0.9 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|119719759|ref|YP_920254.1| - 5.1e-57 191.5 0.1 8.1e-57 190.8 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|119719759|ref|YP_920254.1| - 1.3e-29 102.3 26.4 2.3e-17 62.8 5.3 3.8 2 1 1 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|119719759|ref|YP_920254.1| - 1.1e-16 60.7 0.0 2.5e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|119719759|ref|YP_920254.1| - 1.8e-12 46.4 1.5 1.8e-12 46.4 1.1 3.8 5 0 0 5 5 4 1 Ferrous iron transport protein B C terminus GTP_EFTU PF00009.22 gi|119719759|ref|YP_920254.1| - 5.6e-08 32.4 0.3 7.9e-07 28.6 0.2 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|119719759|ref|YP_920254.1| - 5.8e-05 22.2 0.0 8.8e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family PduV-EutP PF10662.4 gi|119719759|ref|YP_920254.1| - 0.0029 17.1 0.0 0.01 15.3 0.0 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|119719759|ref|YP_920254.1| - 0.0069 16.2 0.2 2.4 7.9 0.0 2.2 2 0 0 2 2 2 2 Dynamin family Miro PF08477.8 gi|119719759|ref|YP_920254.1| - 0.041 14.3 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|119719759|ref|YP_920254.1| - 0.08 12.1 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|119719759|ref|YP_920254.1| - 0.09 12.0 0.0 0.32 10.2 0.0 1.9 1 1 0 1 1 1 0 ADP-ribosylation factor family Radical_SAM PF04055.16 gi|119719760|ref|YP_920255.1| - 2.7e-15 56.9 0.0 4.3e-15 56.2 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|119719760|ref|YP_920255.1| - 2.9e-11 43.6 0.0 4.8e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|119719760|ref|YP_920255.1| - 1.7e-09 37.7 0.0 2.9e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain MFS_1 PF07690.11 gi|119719761|ref|YP_920256.1| - 8.7e-24 83.8 41.8 1.7e-13 50.0 10.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PhoU_div PF01865.11 gi|119719761|ref|YP_920256.1| - 1.1e-17 63.8 7.9 1.8e-17 63.2 5.5 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 MFS_1_like PF12832.2 gi|119719761|ref|YP_920256.1| - 0.028 14.1 0.1 0.14 11.9 0.1 2.3 1 0 0 1 1 1 0 MFS_1 like family DUF1228 PF06779.9 gi|119719761|ref|YP_920256.1| - 4.3 7.4 12.5 1.4 9.0 0.8 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1228) Wyosine_form PF08608.7 gi|119719762|ref|YP_920257.1| - 1.5e-19 69.7 0.1 6.7e-19 67.7 0.0 2.2 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|119719762|ref|YP_920257.1| - 1.5e-14 54.4 0.8 1.5e-12 47.9 0.0 2.9 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|119719762|ref|YP_920257.1| - 0.0019 18.1 2.0 0.044 13.8 1.4 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|119719762|ref|YP_920257.1| - 0.0043 17.2 0.1 0.012 15.8 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Fer4_12 PF13353.1 gi|119719762|ref|YP_920257.1| - 0.0053 16.8 0.7 0.029 14.4 0.5 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF91 PF01939.11 gi|119719763|ref|YP_920258.1| - 6.5e-57 192.3 0.3 7.4e-57 192.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 Cas_Cas4 PF01930.12 gi|119719763|ref|YP_920258.1| - 0.00056 19.8 0.0 0.00088 19.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 Antitoxin-MazE PF04014.13 gi|119719763|ref|YP_920258.1| - 0.00084 18.9 1.8 0.44 10.3 0.1 3.4 3 0 0 3 3 3 1 Antidote-toxin recognition MazE HSDR_N PF04313.9 gi|119719763|ref|YP_920258.1| - 0.0033 17.2 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1703 PF08011.6 gi|119719763|ref|YP_920258.1| - 0.096 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) TPP_enzyme_C PF02775.16 gi|119719765|ref|YP_920260.1| - 3.4e-33 114.3 0.1 1.7e-32 112.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|119719765|ref|YP_920260.1| - 4e-17 61.8 0.0 7.1e-17 61.0 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|119719766|ref|YP_920261.1| - 2.8e-58 197.1 0.0 3.8e-58 196.7 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|119719766|ref|YP_920261.1| - 5.5e-33 114.3 0.0 1.1e-32 113.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|119719766|ref|YP_920261.1| - 5.3e-08 32.5 1.9 1.3e-07 31.2 1.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|119719766|ref|YP_920261.1| - 0.022 14.7 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain DUF123 PF01986.11 gi|119719767|ref|YP_920262.1| - 6.7e-25 87.0 0.0 8.7e-25 86.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 QRPTase_C PF01729.14 gi|119719768|ref|YP_920263.1| - 3.4e-19 69.0 0.0 4.7e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase PF04095.11 gi|119719768|ref|YP_920263.1| - 4.9e-05 22.7 0.0 8.9e-05 21.8 0.0 1.3 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family QRPTase_N PF02749.11 gi|119719768|ref|YP_920263.1| - 0.00014 21.6 0.0 0.00031 20.4 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|119719768|ref|YP_920263.1| - 0.0039 16.3 0.0 0.0062 15.6 0.0 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family Zn-ribbon_8 PF09723.5 gi|119719768|ref|YP_920263.1| - 0.0058 16.5 0.4 0.011 15.6 0.3 1.4 1 0 0 1 1 1 1 Zinc ribbon domain PcrB PF01884.12 gi|119719768|ref|YP_920263.1| - 0.029 13.6 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 PcrB family zf-IS66 PF13005.2 gi|119719768|ref|YP_920263.1| - 0.075 13.0 0.5 0.075 13.0 0.4 2.4 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|119719768|ref|YP_920263.1| - 0.14 11.9 0.9 2.3 8.1 0.1 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|119719768|ref|YP_920263.1| - 0.15 11.5 0.1 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain Desulfoferrod_N PF06397.7 gi|119719768|ref|YP_920263.1| - 0.24 10.8 2.1 0.43 10.0 1.5 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.1 gi|119719768|ref|YP_920263.1| - 5.3 7.1 7.6 1.7 8.7 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_20 PF12840.2 gi|119719769|ref|YP_920264.1| - 6.4e-11 41.8 0.2 9.6e-11 41.3 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|119719769|ref|YP_920264.1| - 5.1e-08 32.4 0.1 7.4e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|119719769|ref|YP_920264.1| - 4.9e-07 29.0 0.1 6.9e-07 28.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|119719769|ref|YP_920264.1| - 1.1e-05 24.9 0.4 1.9e-05 24.2 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|119719769|ref|YP_920264.1| - 8.6e-05 22.5 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|119719769|ref|YP_920264.1| - 0.00039 20.0 0.0 0.00061 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|119719769|ref|YP_920264.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.14 gi|119719769|ref|YP_920264.1| - 0.014 15.1 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|119719769|ref|YP_920264.1| - 0.022 14.2 0.1 0.054 13.0 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain FeoC PF09012.5 gi|119719769|ref|YP_920264.1| - 0.029 14.0 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|119719769|ref|YP_920264.1| - 0.053 13.1 0.2 0.085 12.5 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|119719769|ref|YP_920264.1| - 0.055 13.0 0.1 0.093 12.3 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|119719769|ref|YP_920264.1| - 0.068 13.1 0.1 0.068 13.1 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|119719769|ref|YP_920264.1| - 0.1 12.1 0.1 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DEAD PF00270.24 gi|119719770|ref|YP_920265.1| - 1.3e-25 89.8 0.0 7.3e-25 87.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|119719770|ref|YP_920265.1| - 1.6e-16 59.9 0.0 1.2e-14 53.8 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|119719770|ref|YP_920265.1| - 6.8e-15 55.4 0.1 1.5e-14 54.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) AAA_19 PF13245.1 gi|119719770|ref|YP_920265.1| - 0.00015 21.4 0.9 0.00074 19.2 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain ResIII PF04851.10 gi|119719770|ref|YP_920265.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|119719770|ref|YP_920265.1| - 0.0034 16.7 0.0 0.005 16.1 0.0 1.2 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain TIP49 PF06068.8 gi|119719771|ref|YP_920266.1| - 2.3e-159 530.4 0.0 2.7e-159 530.1 0.0 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|119719771|ref|YP_920266.1| - 1.7e-11 44.4 1.6 7.8e-09 35.8 0.0 3.1 3 1 1 4 4 3 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|119719771|ref|YP_920266.1| - 7.2e-08 31.7 2.9 3.9e-05 22.8 0.0 3.2 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|119719771|ref|YP_920266.1| - 8.1e-08 32.4 0.1 0.004 17.2 0.0 2.8 3 1 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|119719771|ref|YP_920266.1| - 4.3e-07 30.1 0.1 0.00083 19.3 0.0 2.5 3 0 0 3 3 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|119719771|ref|YP_920266.1| - 1.8e-05 24.4 0.1 5.7e-05 22.7 0.1 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|119719771|ref|YP_920266.1| - 2.9e-05 24.8 0.0 0.0001 23.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|119719771|ref|YP_920266.1| - 3.8e-05 24.0 0.0 0.00013 22.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.16 gi|119719771|ref|YP_920266.1| - 6.8e-05 22.1 0.5 0.00027 20.1 0.1 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|119719771|ref|YP_920266.1| - 0.00014 21.6 0.3 0.0022 17.7 0.0 2.7 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|119719771|ref|YP_920266.1| - 0.00057 19.3 0.1 0.0013 18.1 0.1 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|119719771|ref|YP_920266.1| - 0.00091 18.3 0.7 0.0026 16.9 0.1 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_25 PF13481.1 gi|119719771|ref|YP_920266.1| - 0.0011 18.3 1.3 0.0041 16.5 0.2 2.3 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|119719771|ref|YP_920266.1| - 0.0033 17.4 0.0 0.029 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|119719771|ref|YP_920266.1| - 0.0056 16.9 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.1 gi|119719771|ref|YP_920266.1| - 0.0069 16.2 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|119719771|ref|YP_920266.1| - 0.014 14.9 0.0 0.12 11.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DnaB_C PF03796.10 gi|119719771|ref|YP_920266.1| - 0.019 13.8 0.0 0.055 12.3 0.0 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain PhoH PF02562.11 gi|119719771|ref|YP_920266.1| - 0.02 14.1 0.1 0.036 13.3 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein DUF2075 PF09848.4 gi|119719771|ref|YP_920266.1| - 0.026 13.4 0.0 0.053 12.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|119719771|ref|YP_920266.1| - 0.027 14.3 0.0 0.95 9.3 0.0 2.6 3 0 0 3 3 2 0 AAA domain KaiC PF06745.8 gi|119719771|ref|YP_920266.1| - 0.046 12.8 0.1 0.12 11.4 0.0 1.7 1 0 0 1 1 1 0 KaiC AAA_11 PF13086.1 gi|119719771|ref|YP_920266.1| - 0.048 13.2 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|119719771|ref|YP_920266.1| - 0.054 13.0 0.3 0.54 9.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|119719771|ref|YP_920266.1| - 0.083 11.7 0.1 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|119719771|ref|YP_920266.1| - 0.085 11.7 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|119719771|ref|YP_920266.1| - 0.094 12.6 0.0 3.7 7.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) IPT PF01745.11 gi|119719771|ref|YP_920266.1| - 0.11 11.7 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase NACHT PF05729.7 gi|119719771|ref|YP_920266.1| - 0.12 12.0 0.0 0.31 10.6 0.0 1.7 2 0 0 2 2 1 0 NACHT domain AAA_29 PF13555.1 gi|119719771|ref|YP_920266.1| - 0.12 11.8 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|119719771|ref|YP_920266.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Peptidase_S24 PF00717.18 gi|119719772|ref|YP_920267.1| - 2.2e-08 33.6 0.3 3.2e-08 33.0 0.2 1.3 1 0 0 1 1 1 1 Peptidase S24-like DUF4131 PF13567.1 gi|119719772|ref|YP_920267.1| - 0.24 10.7 10.5 0.21 10.9 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Peptidase_M50 PF02163.17 gi|119719773|ref|YP_920268.1| - 2.1e-23 82.2 3.4 3.3e-23 81.6 0.3 2.4 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|119719773|ref|YP_920268.1| - 3.1e-12 46.2 0.0 1.8e-11 43.7 0.0 2.0 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|119719773|ref|YP_920268.1| - 2.1e-09 37.4 0.0 6.1e-08 32.7 0.0 2.7 3 0 0 3 3 3 1 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|119719773|ref|YP_920268.1| - 0.0067 16.2 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 PDZ-like domain Tricorn_PDZ PF14685.1 gi|119719773|ref|YP_920268.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain Hjc PF01870.13 gi|119719775|ref|YP_920270.1| - 1.9e-12 46.6 0.5 2.4e-12 46.2 0.4 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) VRR_NUC PF08774.6 gi|119719775|ref|YP_920270.1| - 0.0013 18.7 0.1 0.0018 18.2 0.1 1.4 1 1 0 1 1 1 1 VRR-NUC domain HSDR_N PF04313.9 gi|119719775|ref|YP_920270.1| - 0.014 15.1 0.2 0.016 14.9 0.2 1.1 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Motile_Sperm PF00635.21 gi|119719775|ref|YP_920270.1| - 0.014 14.9 0.3 0.042 13.5 0.2 1.7 2 0 0 2 2 2 0 MSP (Major sperm protein) domain DUF354 PF04007.7 gi|119719776|ref|YP_920271.1| - 1.2e-35 123.0 0.0 1.3e-35 122.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.14 gi|119719776|ref|YP_920271.1| - 0.066 11.9 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase PepSY_TM_3 PF13706.1 gi|119719777|ref|YP_920272.1| - 0.0097 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 PepSY-associated TM helix Zip PF02535.17 gi|119719777|ref|YP_920272.1| - 0.033 13.1 0.0 0.039 12.9 0.0 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter DUF4131 PF13567.1 gi|119719777|ref|YP_920272.1| - 0.075 12.4 0.1 0.091 12.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) AsnC_trans_reg PF01037.16 gi|119719778|ref|YP_920273.1| - 1.3e-12 47.2 0.1 2e-12 46.6 0.1 1.3 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|119719778|ref|YP_920273.1| - 0.00055 19.6 0.2 0.00095 18.8 0.0 1.4 2 0 0 2 2 2 1 GYD domain Presenilin PF01080.12 gi|119719779|ref|YP_920274.1| - 6.4e-09 35.1 14.8 6.2e-05 22.0 0.1 2.2 1 1 1 2 2 2 2 Presenilin AAA_22 PF13401.1 gi|119719780|ref|YP_920275.1| - 4.8e-11 42.9 0.0 2.8e-10 40.4 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|119719780|ref|YP_920275.1| - 3.3e-07 30.4 0.2 2.4e-06 27.6 0.1 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|119719780|ref|YP_920275.1| - 2.3e-05 24.6 0.0 4.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|119719780|ref|YP_920275.1| - 0.00036 20.1 0.0 0.00083 19.0 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal DUF2075 PF09848.4 gi|119719780|ref|YP_920275.1| - 0.0028 16.6 0.0 0.0041 16.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|119719780|ref|YP_920275.1| - 0.033 14.0 0.0 0.1 12.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|119719780|ref|YP_920275.1| - 0.045 13.2 0.7 2.1 7.8 0.5 2.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase PhoH PF02562.11 gi|119719780|ref|YP_920275.1| - 0.047 12.9 0.0 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.1 gi|119719780|ref|YP_920275.1| - 0.059 12.7 0.3 6.1 6.1 0.1 3.0 2 1 0 2 2 2 0 AAA domain Met_asp_mut_E PF06368.6 gi|119719780|ref|YP_920275.1| - 0.072 11.2 0.0 0.15 10.2 0.0 1.4 2 0 0 2 2 2 0 Methylaspartate mutase E chain (MutE) NACHT PF05729.7 gi|119719780|ref|YP_920275.1| - 0.08 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|119719780|ref|YP_920275.1| - 0.09 13.0 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.10 gi|119719780|ref|YP_920275.1| - 0.13 12.0 0.0 0.49 10.2 0.0 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit PvlArgDC PF01862.11 gi|119719781|ref|YP_920276.1| - 7.5e-40 136.2 0.0 8.4e-40 136.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DSHCT PF08148.7 gi|119719783|ref|YP_920278.1| - 0.05 12.8 0.0 0.058 12.6 0.0 1.0 1 0 0 1 1 1 0 DSHCT (NUC185) domain EF-1_beta_acid PF10587.4 gi|119719783|ref|YP_920278.1| - 4.9 7.3 7.5 9.2 6.5 5.2 1.4 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region MTS PF05175.9 gi|119719784|ref|YP_920279.1| - 8.7e-21 74.0 0.0 1.1e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|119719784|ref|YP_920279.1| - 5.9e-15 55.3 0.1 7.9e-15 54.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|119719784|ref|YP_920279.1| - 7.1e-11 42.4 0.4 1.1e-09 38.6 0.3 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119719784|ref|YP_920279.1| - 8.2e-10 38.4 0.0 1e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119719784|ref|YP_920279.1| - 4.1e-07 30.2 0.1 1.2e-06 28.7 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719784|ref|YP_920279.1| - 1.8e-06 28.5 0.1 2.5e-06 28.0 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|119719784|ref|YP_920279.1| - 5.2e-06 26.1 0.0 9.2e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|119719784|ref|YP_920279.1| - 0.00027 21.3 0.0 0.00054 20.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|119719784|ref|YP_920279.1| - 0.00075 19.2 0.0 0.0012 18.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|119719784|ref|YP_920279.1| - 0.0014 17.8 0.0 0.0018 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|119719784|ref|YP_920279.1| - 0.016 14.3 0.0 0.37 9.8 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family TPMT PF05724.6 gi|119719784|ref|YP_920279.1| - 0.044 13.2 0.1 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.15 gi|119719784|ref|YP_920279.1| - 0.086 11.9 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF59 PF01883.14 gi|119719785|ref|YP_920280.1| - 2.1e-19 69.2 0.4 2.6e-19 68.9 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF59 NifU PF01106.12 gi|119719785|ref|YP_920280.1| - 0.00072 19.2 0.1 0.0011 18.6 0.1 1.4 1 1 0 1 1 1 1 NifU-like domain GMP_synt_C PF00958.17 gi|119719785|ref|YP_920280.1| - 0.017 14.8 0.1 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 GMP synthase C terminal domain ERCC4 PF02732.10 gi|119719786|ref|YP_920281.1| - 1.3e-20 73.5 0.0 1.9e-20 73.0 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.18 gi|119719786|ref|YP_920281.1| - 2.2e-08 33.3 0.0 0.0078 15.8 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|119719786|ref|YP_920281.1| - 2.5e-08 33.9 0.0 1.3e-07 31.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|119719786|ref|YP_920281.1| - 0.00014 21.7 0.1 0.0032 17.3 0.0 2.7 2 1 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|119719786|ref|YP_920281.1| - 0.0053 16.7 0.0 3.8 7.7 0.0 2.9 3 0 0 3 3 3 2 IMS family HHH motif ACT_7 PF13840.1 gi|119719786|ref|YP_920281.1| - 0.04 13.4 0.2 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 ACT domain HHH_2 PF12826.2 gi|119719786|ref|YP_920281.1| - 0.065 13.1 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif Ribosomal_60s PF00428.14 gi|119719787|ref|YP_920282.1| - 2.7e-19 69.3 15.0 3.1e-19 69.1 10.4 1.0 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|119719787|ref|YP_920282.1| - 0.00022 21.0 3.6 0.17 11.7 0.1 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DEC-1_N PF04625.8 gi|119719787|ref|YP_920282.1| - 0.018 13.7 0.5 0.021 13.4 0.3 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region TFIID_30kDa PF03540.8 gi|119719787|ref|YP_920282.1| - 0.022 14.5 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit DUF3484 PF11983.3 gi|119719787|ref|YP_920282.1| - 0.069 13.9 0.5 0.097 13.5 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3484) Peptidase_A24 PF01478.13 gi|119719788|ref|YP_920283.1| - 2e-07 31.1 8.9 2e-07 31.1 6.2 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family BTP PF05232.7 gi|119719788|ref|YP_920283.1| - 8.7 6.1 7.2 1.9 8.2 1.5 2.3 1 1 2 3 3 3 0 Bacterial Transmembrane Pair family TIM PF00121.13 gi|119719789|ref|YP_920284.1| - 4.6e-30 104.4 0.3 5.7e-28 97.6 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.10 gi|119719789|ref|YP_920284.1| - 4.6e-05 22.7 3.1 5.5e-05 22.4 2.2 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|119719789|ref|YP_920284.1| - 0.00059 18.9 0.9 0.0011 18.1 0.4 1.5 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|119719789|ref|YP_920284.1| - 0.00076 18.4 1.4 0.0019 17.1 0.3 1.9 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|119719789|ref|YP_920284.1| - 0.0078 15.2 0.0 0.017 14.2 0.0 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|119719789|ref|YP_920284.1| - 0.027 13.7 0.3 0.12 11.6 0.1 2.0 2 0 0 2 2 2 0 Histidine biosynthesis protein DHO_dh PF01180.16 gi|119719789|ref|YP_920284.1| - 0.029 13.3 0.9 0.046 12.6 0.2 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Synuclein PF01387.12 gi|119719789|ref|YP_920284.1| - 0.047 13.6 1.0 0.14 12.0 0.7 1.7 1 0 0 1 1 1 0 Synuclein TIM-br_sig_trns PF09370.5 gi|119719789|ref|YP_920284.1| - 0.053 12.5 0.2 0.093 11.7 0.1 1.4 1 0 0 1 1 1 0 TIM-barrel signal transduction protein B12-binding PF02310.14 gi|119719789|ref|YP_920284.1| - 0.056 13.3 0.5 0.23 11.3 0.3 2.2 1 1 1 2 2 2 0 B12 binding domain Radical_SAM PF04055.16 gi|119719790|ref|YP_920285.1| - 3.7e-13 49.9 0.0 6.7e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|119719790|ref|YP_920285.1| - 3.4e-07 30.4 0.0 5.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|119719790|ref|YP_920285.1| - 3.2e-05 23.9 0.0 5.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Diphthamide_syn PF01866.12 gi|119719791|ref|YP_920286.1| - 3.1e-76 256.5 0.0 3.6e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein AP_endonuc_2 PF01261.19 gi|119719792|ref|YP_920287.1| - 1.4e-18 66.9 0.8 2.3e-18 66.2 0.5 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ComA PF02679.10 gi|119719792|ref|YP_920287.1| - 0.07 12.1 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) PhoH PF02562.11 gi|119719793|ref|YP_920288.1| - 2.9e-32 111.5 0.0 4e-32 111.1 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_1 PF00013.24 gi|119719793|ref|YP_920288.1| - 1.2e-07 31.2 0.4 0.0003 20.3 0.6 2.9 1 1 1 2 2 2 2 KH domain KH_2 PF07650.12 gi|119719793|ref|YP_920288.1| - 5.2e-07 29.1 0.5 0.00099 18.6 0.8 2.5 1 1 1 2 2 2 2 KH domain KH_3 PF13014.1 gi|119719793|ref|YP_920288.1| - 3.2e-06 26.6 0.1 0.00056 19.4 0.1 2.9 3 0 0 3 3 3 1 KH domain KH_5 PF13184.1 gi|119719793|ref|YP_920288.1| - 7.7e-06 25.6 1.9 0.0015 18.2 0.3 3.3 4 0 0 4 4 4 1 NusA-like KH domain AAA_22 PF13401.1 gi|119719793|ref|YP_920288.1| - 0.0096 16.0 0.0 0.025 14.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|119719793|ref|YP_920288.1| - 0.013 14.8 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein KH_4 PF13083.1 gi|119719793|ref|YP_920288.1| - 0.031 13.9 0.0 9.3 5.9 0.0 2.6 2 0 0 2 2 2 0 KH domain DEAD PF00270.24 gi|119719793|ref|YP_920288.1| - 0.039 13.4 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA PF00004.24 gi|119719793|ref|YP_920288.1| - 0.064 13.4 0.2 6.1 7.0 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|119719793|ref|YP_920288.1| - 0.083 12.3 0.0 0.12 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|119719793|ref|YP_920288.1| - 0.091 12.7 2.5 0.73 9.7 0.0 2.7 2 1 0 3 3 3 0 AAA ATPase domain Topoisom_bac PF01131.15 gi|119719794|ref|YP_920289.1| - 2.2e-104 349.4 0.0 2.7e-104 349.2 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|119719794|ref|YP_920289.1| - 1.8e-16 59.9 0.0 3.7e-16 58.9 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|119719794|ref|YP_920289.1| - 0.0031 17.4 0.0 0.01 15.8 0.0 1.9 1 0 0 1 1 1 1 Toprim domain ASCH PF04266.9 gi|119719795|ref|YP_920290.1| - 2.1e-13 50.5 0.0 3.1e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 ASCH domain Sigma70_r4_2 PF08281.7 gi|119719795|ref|YP_920290.1| - 0.013 14.9 0.2 0.024 14.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|119719795|ref|YP_920290.1| - 0.08 12.2 1.1 0.11 11.7 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|119719795|ref|YP_920290.1| - 0.1 11.7 0.1 1.1 8.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DHH PF01368.15 gi|119719797|ref|YP_920292.1| - 1.3e-05 24.8 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|119719797|ref|YP_920292.1| - 4.1e-05 23.1 0.3 0.00012 21.6 0.2 1.8 1 0 0 1 1 1 1 DHHA1 domain ACT PF01842.20 gi|119719798|ref|YP_920293.1| - 8.6e-08 31.5 0.1 4.5e-07 29.2 0.0 2.1 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|119719798|ref|YP_920293.1| - 7e-05 22.2 0.0 0.00016 21.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|119719798|ref|YP_920293.1| - 0.00031 21.0 0.1 0.011 16.1 0.0 2.8 2 2 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|119719798|ref|YP_920293.1| - 0.072 12.8 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 ACT domain PALP PF00291.20 gi|119719799|ref|YP_920294.1| - 2.2e-41 142.0 0.0 2.6e-41 141.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GHMP_kinases_N PF00288.21 gi|119719800|ref|YP_920295.1| - 1.1e-22 79.8 0.0 2.9e-22 78.5 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|119719800|ref|YP_920295.1| - 3.4e-16 59.2 0.9 6.5e-16 58.3 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|119719800|ref|YP_920295.1| - 0.042 13.1 0.0 0.12 11.6 0.0 1.8 1 0 0 1 1 1 0 Galactokinase galactose-binding signature AMP-binding PF00501.23 gi|119719802|ref|YP_920297.1| - 2.3e-98 329.3 0.0 2.9e-98 329.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|119719802|ref|YP_920297.1| - 6.1e-25 87.9 1.7 1.4e-24 86.8 1.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain FGGY_N PF00370.16 gi|119719803|ref|YP_920298.1| - 1.5e-71 240.5 0.0 2.1e-71 240.1 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|119719803|ref|YP_920298.1| - 3.2e-39 134.6 0.2 4.7e-39 134.0 0.1 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|119719803|ref|YP_920298.1| - 5.8e-05 22.5 0.0 0.022 14.0 0.0 2.5 3 0 0 3 3 3 2 BadF/BadG/BcrA/BcrD ATPase family Hexapep PF00132.19 gi|119719804|ref|YP_920299.1| - 2.2e-27 93.2 18.0 4.2e-09 35.5 2.4 3.6 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|119719804|ref|YP_920299.1| - 2.6e-16 58.8 16.2 3.9e-08 32.6 2.4 3.8 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase BacteriocIIc_cy PF12173.3 gi|119719804|ref|YP_920299.1| - 0.082 12.9 0.2 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like MttA_Hcf106 PF02416.11 gi|119719805|ref|YP_920300.1| - 1.6e-15 55.9 1.5 1.8e-15 55.7 1.0 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family Rho_N PF07498.7 gi|119719805|ref|YP_920300.1| - 0.00058 19.5 0.6 0.00058 19.5 0.4 2.0 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain SAP PF02037.22 gi|119719805|ref|YP_920300.1| - 0.0073 15.7 1.7 0.0097 15.3 0.4 1.7 1 1 1 2 2 2 1 SAP domain Tir_receptor_M PF03549.9 gi|119719805|ref|YP_920300.1| - 0.088 12.9 0.5 1.8 8.7 0.1 2.3 2 1 0 2 2 2 0 Translocated intimin receptor (Tir) intimin-binding domain IF2_N PF04760.10 gi|119719805|ref|YP_920300.1| - 0.13 11.8 3.9 1.5 8.5 0.0 2.7 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region YtxH PF12732.2 gi|119719805|ref|YP_920300.1| - 0.51 10.7 3.9 1 9.7 2.7 1.5 1 1 0 1 1 1 0 YtxH-like protein Retrotrans_gag PF03732.12 gi|119719806|ref|YP_920301.1| - 0.0018 18.2 3.8 0.02 14.9 0.1 3.0 2 1 2 4 4 3 1 Retrotransposon gag protein MCPsignal PF00015.16 gi|119719806|ref|YP_920301.1| - 0.0056 16.2 0.9 0.11 11.9 0.0 2.9 2 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain CHASE3 PF05227.8 gi|119719806|ref|YP_920301.1| - 0.0058 16.3 0.3 0.0058 16.3 0.2 2.9 2 1 0 3 3 3 1 CHASE3 domain GvpK PF05121.7 gi|119719806|ref|YP_920301.1| - 0.015 15.1 4.7 0.074 12.8 0.6 2.8 2 0 0 2 2 2 0 Gas vesicle protein K Synaptobrevin PF00957.16 gi|119719806|ref|YP_920301.1| - 0.015 14.8 0.5 0.21 11.2 0.0 2.6 2 0 0 2 2 2 0 Synaptobrevin Gp58 PF07902.6 gi|119719806|ref|YP_920301.1| - 0.02 13.1 0.7 0.12 10.5 0.0 1.9 1 1 1 2 2 2 0 gp58-like protein LOH1CR12 PF10158.4 gi|119719806|ref|YP_920301.1| - 0.026 14.3 0.1 0.1 12.3 0.0 2.1 2 0 0 2 2 1 0 Tumour suppressor protein FliG_N PF14842.1 gi|119719806|ref|YP_920301.1| - 0.028 14.5 2.2 0.089 12.9 0.1 2.8 3 1 0 3 3 2 0 FliG N-terminal domain DUF2313 PF10076.4 gi|119719806|ref|YP_920301.1| - 0.034 13.5 0.8 0.16 11.3 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2313) HeLo PF14479.1 gi|119719806|ref|YP_920301.1| - 0.05 13.3 6.8 0.1 12.2 4.7 1.5 1 0 0 1 1 1 0 Prion-inhibition and propagation Prominin PF05478.6 gi|119719806|ref|YP_920301.1| - 0.067 10.7 0.4 0.089 10.3 0.3 1.1 1 0 0 1 1 1 0 Prominin Spectrin PF00435.16 gi|119719806|ref|YP_920301.1| - 0.077 13.2 8.9 0.084 13.1 1.0 3.3 1 1 1 2 2 2 0 Spectrin repeat DUF1796 PF08795.5 gi|119719806|ref|YP_920301.1| - 0.16 11.5 0.3 13 5.3 0.0 2.5 2 1 0 2 2 2 0 Putative papain-like cysteine peptidase (DUF1796) CAP_N PF01213.14 gi|119719806|ref|YP_920301.1| - 0.18 11.0 2.0 0.28 10.4 1.4 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Laminin_II PF06009.7 gi|119719806|ref|YP_920301.1| - 0.2 11.4 7.0 0.29 10.8 0.9 2.9 1 1 3 4 4 4 0 Laminin Domain II BLOC1_2 PF10046.4 gi|119719806|ref|YP_920301.1| - 0.21 11.7 5.1 2.8 8.1 0.0 3.4 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 STAT_alpha PF01017.15 gi|119719806|ref|YP_920301.1| - 0.24 11.0 4.0 2.4 7.8 0.1 2.9 1 1 2 3 3 3 0 STAT protein, all-alpha domain V_ATPase_I PF01496.14 gi|119719806|ref|YP_920301.1| - 0.49 8.1 6.8 1.5 6.5 0.1 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Hpt PF01627.18 gi|119719806|ref|YP_920301.1| - 0.86 9.6 17.0 0.84 9.6 1.1 4.1 2 1 0 4 4 4 0 Hpt domain Phage_GP20 PF06810.6 gi|119719806|ref|YP_920301.1| - 2.3 7.6 6.4 8.4 5.8 1.2 2.8 2 1 1 3 3 3 0 Phage minor structural protein GP20 FUSC PF04632.7 gi|119719806|ref|YP_920301.1| - 3.3 6.0 17.0 1.2 7.4 6.3 2.0 1 1 0 2 2 2 0 Fusaric acid resistance protein family CTP_transf_2 PF01467.21 gi|119719807|ref|YP_920302.1| - 1.4e-13 51.1 0.0 1.8e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase RNase_HII PF01351.13 gi|119719808|ref|YP_920303.1| - 3.4e-47 160.6 0.0 3.8e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Vps16_N PF04841.8 gi|119719809|ref|YP_920304.1| - 0.087 11.3 0.0 0.087 11.3 0.0 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region ROK PF00480.15 gi|119719810|ref|YP_920305.1| - 4.9e-40 137.2 0.2 6.3e-40 136.8 0.2 1.1 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.11 gi|119719810|ref|YP_920305.1| - 0.0023 16.7 0.0 0.097 11.4 0.0 2.2 2 0 0 2 2 2 2 Glucokinase BcrAD_BadFG PF01869.15 gi|119719810|ref|YP_920305.1| - 0.0044 16.3 0.0 0.8 8.9 0.0 2.1 1 1 1 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|119719810|ref|YP_920305.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain tRNA-synt_1e PF01406.14 gi|119719811|ref|YP_920306.1| - 1e-128 428.6 0.0 1.3e-128 428.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|119719811|ref|YP_920306.1| - 1.6e-18 66.5 0.8 9.4e-13 47.5 0.2 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|119719811|ref|YP_920306.1| - 1.6e-09 36.3 0.0 1.8e-06 26.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|119719811|ref|YP_920306.1| - 1.5e-07 31.5 0.1 1.5e-07 31.5 0.1 2.4 3 0 0 3 3 3 1 DALR domain tRNA-synt_1f PF01921.13 gi|119719811|ref|YP_920306.1| - 0.005 15.5 0.1 0.19 10.3 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1c PF00749.16 gi|119719811|ref|YP_920306.1| - 0.016 13.8 0.2 0.13 10.9 0.0 2.5 4 0 0 4 4 4 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1d PF00750.14 gi|119719811|ref|YP_920306.1| - 0.057 12.2 0.1 0.13 11.0 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetases class I (R) Glyco_trans_4_4 PF13579.1 gi|119719811|ref|YP_920306.1| - 0.085 12.9 0.4 0.66 10.1 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Mut7-C PF01927.11 gi|119719811|ref|YP_920306.1| - 0.11 12.4 0.0 0.34 10.8 0.0 1.8 2 0 0 2 2 2 0 Mut7-C RNAse domain Fe-ADH PF00465.14 gi|119719812|ref|YP_920307.1| - 0.062 11.9 0.0 0.14 10.7 0.0 1.4 1 1 0 1 1 1 0 Iron-containing alcohol dehydrogenase ABC_tran PF00005.22 gi|119719813|ref|YP_920308.1| - 6.4e-34 117.1 0.0 8.5e-34 116.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119719813|ref|YP_920308.1| - 3.3e-12 46.9 0.0 3e-07 30.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|119719813|ref|YP_920308.1| - 2.1e-06 27.4 0.3 0.022 14.1 0.1 2.5 2 1 0 3 3 3 2 AAA-like domain SMC_N PF02463.14 gi|119719813|ref|YP_920308.1| - 2.4e-05 23.6 0.2 0.01 15.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|119719813|ref|YP_920308.1| - 7.4e-05 22.2 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|119719813|ref|YP_920308.1| - 0.00036 20.5 0.6 0.0013 18.7 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|119719813|ref|YP_920308.1| - 0.0014 17.5 0.0 0.0024 16.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|119719813|ref|YP_920308.1| - 0.0024 17.5 0.1 0.0097 15.6 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|119719813|ref|YP_920308.1| - 0.006 16.7 0.2 0.025 14.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|119719813|ref|YP_920308.1| - 0.0067 15.8 0.3 0.012 15.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|119719813|ref|YP_920308.1| - 0.0091 16.8 0.8 0.017 15.9 0.5 1.9 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|119719813|ref|YP_920308.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|119719813|ref|YP_920308.1| - 0.015 14.4 0.1 0.024 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|119719813|ref|YP_920308.1| - 0.017 13.7 0.3 3.1 6.2 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|119719813|ref|YP_920308.1| - 0.024 14.8 0.1 7.7 6.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|119719813|ref|YP_920308.1| - 0.025 14.8 0.0 0.2 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|119719813|ref|YP_920308.1| - 0.035 13.9 0.2 0.088 12.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|119719813|ref|YP_920308.1| - 0.036 13.9 0.2 0.51 10.2 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|119719813|ref|YP_920308.1| - 0.046 12.8 0.0 0.46 9.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|119719813|ref|YP_920308.1| - 0.046 14.2 0.1 0.075 13.5 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|119719813|ref|YP_920308.1| - 0.051 13.2 0.1 0.091 12.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain DUF3987 PF13148.1 gi|119719813|ref|YP_920308.1| - 0.052 12.1 0.0 0.082 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_24 PF13479.1 gi|119719813|ref|YP_920308.1| - 0.066 12.7 0.1 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|119719813|ref|YP_920308.1| - 0.073 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119719813|ref|YP_920308.1| - 0.12 12.0 0.1 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DAP3 PF10236.4 gi|119719813|ref|YP_920308.1| - 0.2 10.5 0.4 0.31 9.9 0.3 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 BPD_transp_1 PF00528.17 gi|119719814|ref|YP_920309.1| - 3.9e-17 62.3 7.5 3.9e-17 62.3 5.2 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|119719815|ref|YP_920310.1| - 8.4e-61 205.0 1.6 1e-60 204.7 1.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|119719815|ref|YP_920310.1| - 6.5e-08 32.2 0.4 7.9e-06 25.4 0.1 2.1 2 0 0 2 2 2 2 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|119719815|ref|YP_920310.1| - 1.5e-05 24.6 0.6 2.5e-05 23.9 0.4 1.4 1 0 0 1 1 1 1 NMT1/THI5 like OpuAC PF04069.7 gi|119719815|ref|YP_920310.1| - 0.00077 18.8 1.7 0.0014 18.0 1.2 1.4 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PBP_like_2 PF12849.2 gi|119719815|ref|YP_920310.1| - 0.0023 17.4 0.2 1.5 8.2 0.0 2.2 2 0 0 2 2 2 2 PBP superfamily domain YhfZ_C PF14503.1 gi|119719815|ref|YP_920310.1| - 0.0046 16.3 0.9 0.085 12.1 0.4 2.0 1 1 1 2 2 2 2 YhfZ C-terminal domain SBP_bac_7 PF03480.8 gi|119719815|ref|YP_920310.1| - 0.016 14.3 0.0 1.8 7.5 0.0 2.2 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 LysR_substrate PF03466.15 gi|119719815|ref|YP_920310.1| - 0.051 12.6 0.0 0.62 9.1 0.0 2.0 2 0 0 2 2 2 0 LysR substrate binding domain NMT1_2 PF13379.1 gi|119719815|ref|YP_920310.1| - 0.059 12.7 0.0 0.34 10.2 0.0 1.9 2 0 0 2 2 2 0 NMT1-like family Glyco_hydro_4 PF02056.11 gi|119719815|ref|YP_920310.1| - 0.077 12.3 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase ACT_7 PF13840.1 gi|119719816|ref|YP_920311.1| - 0.028 13.9 0.1 0.058 12.9 0.1 1.5 1 0 0 1 1 1 0 ACT domain ParA PF10609.4 gi|119719817|ref|YP_920312.1| - 5.9e-32 109.3 0.1 1e-31 108.6 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|119719817|ref|YP_920312.1| - 4.8e-17 61.9 0.0 7.9e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|119719817|ref|YP_920312.1| - 1.8e-07 30.6 0.1 0.0017 17.6 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|119719817|ref|YP_920312.1| - 1e-06 28.7 0.0 3.6e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|119719817|ref|YP_920312.1| - 3.7e-05 23.4 0.7 0.24 10.9 0.2 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|119719817|ref|YP_920312.1| - 0.00018 20.7 0.5 0.00029 19.9 0.3 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|119719817|ref|YP_920312.1| - 0.0002 20.5 0.1 0.00041 19.5 0.1 1.5 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|119719817|ref|YP_920312.1| - 0.00085 18.7 0.1 0.0019 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|119719817|ref|YP_920312.1| - 0.013 15.2 1.7 0.079 12.7 0.1 2.7 3 0 0 3 3 3 0 Part of AAA domain AAA_16 PF13191.1 gi|119719817|ref|YP_920312.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|119719817|ref|YP_920312.1| - 0.019 13.7 0.1 0.033 12.9 0.0 1.4 1 0 0 1 1 1 0 ArgK protein DUF258 PF03193.11 gi|119719817|ref|YP_920312.1| - 0.021 14.0 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|119719817|ref|YP_920312.1| - 0.058 12.9 0.7 0.092 12.3 0.5 1.2 1 0 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|119719817|ref|YP_920312.1| - 0.071 12.4 0.3 0.34 10.2 0.1 2.0 3 0 0 3 3 3 0 YhjQ protein APS_kinase PF01583.15 gi|119719817|ref|YP_920312.1| - 0.073 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase SRP54 PF00448.17 gi|119719817|ref|YP_920312.1| - 0.078 12.4 0.2 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF1611 PF07755.6 gi|119719817|ref|YP_920312.1| - 0.081 11.5 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) AAA_5 PF07728.9 gi|119719817|ref|YP_920312.1| - 0.092 12.4 0.0 0.77 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|119719817|ref|YP_920312.1| - 0.11 11.8 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|119719817|ref|YP_920312.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase VirC1 PF07015.6 gi|119719817|ref|YP_920312.1| - 0.13 11.2 0.1 0.3 10.1 0.1 1.5 1 0 0 1 1 1 0 VirC1 protein Glyco_transf_4 PF13439.1 gi|119719817|ref|YP_920312.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Peptidase_M50 PF02163.17 gi|119719818|ref|YP_920313.1| - 3.8e-08 32.5 9.3 3.2e-06 26.2 5.1 3.3 1 1 0 1 1 1 1 Peptidase family M50 DUF3981 PF13139.1 gi|119719818|ref|YP_920313.1| - 0.054 13.4 0.0 0.098 12.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3981) DUF3040 PF11239.3 gi|119719818|ref|YP_920313.1| - 3.7 7.6 5.5 7.2 6.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) SBP_bac_8 PF13416.1 gi|119719819|ref|YP_920314.1| - 2.5e-33 116.0 0.1 3.1e-33 115.7 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|119719819|ref|YP_920314.1| - 2.5e-31 108.8 0.1 3.6e-31 108.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119719819|ref|YP_920314.1| - 5e-10 39.6 7.3 5e-09 36.3 5.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119719819|ref|YP_920314.1| - 1.4e-09 37.9 0.0 2.9e-09 36.8 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|119719819|ref|YP_920314.1| - 0.00063 19.5 1.7 0.0016 18.2 1.2 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|119719820|ref|YP_920315.1| - 1e-14 54.5 8.3 1e-14 54.5 5.8 1.9 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119719821|ref|YP_920316.1| - 5.5e-15 55.3 14.3 5.5e-15 55.3 9.9 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component CorA PF01544.13 gi|119719821|ref|YP_920316.1| - 2.3 7.1 5.4 4 6.3 3.8 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein ABC_tran PF00005.22 gi|119719822|ref|YP_920317.1| - 6.4e-37 126.9 0.0 1e-36 126.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119719822|ref|YP_920317.1| - 2.3e-14 54.0 0.1 8.6e-09 35.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|119719822|ref|YP_920317.1| - 2.2e-07 30.3 0.0 5.5e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain TOBE_2 PF08402.5 gi|119719822|ref|YP_920317.1| - 1.6e-06 28.0 1.4 3e-06 27.1 0.1 2.2 3 0 0 3 3 1 1 TOBE domain AAA_22 PF13401.1 gi|119719822|ref|YP_920317.1| - 3.3e-05 24.0 0.3 0.17 11.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|119719822|ref|YP_920317.1| - 5.1e-05 22.7 0.1 0.042 13.2 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119719822|ref|YP_920317.1| - 0.00012 22.1 0.6 0.00031 20.7 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|119719822|ref|YP_920317.1| - 0.00036 20.3 0.1 0.0029 17.4 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|119719822|ref|YP_920317.1| - 0.00046 19.9 0.0 0.00068 19.3 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase SMC_N PF02463.14 gi|119719822|ref|YP_920317.1| - 0.0026 17.0 0.0 0.17 11.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|119719822|ref|YP_920317.1| - 0.0031 16.9 0.1 0.41 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain Rad17 PF03215.10 gi|119719822|ref|YP_920317.1| - 0.004 15.8 0.0 0.0053 15.5 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|119719822|ref|YP_920317.1| - 0.0062 16.8 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|119719822|ref|YP_920317.1| - 0.0074 16.0 0.0 0.027 14.2 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|119719822|ref|YP_920317.1| - 0.0085 16.2 0.1 0.033 14.3 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|119719822|ref|YP_920317.1| - 0.022 14.2 0.0 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|119719822|ref|YP_920317.1| - 0.029 14.0 0.0 0.061 12.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.4 gi|119719822|ref|YP_920317.1| - 0.038 12.5 0.1 7.6 4.9 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.1 gi|119719822|ref|YP_920317.1| - 0.04 13.8 0.1 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|119719822|ref|YP_920317.1| - 0.067 13.4 0.3 0.2 11.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|119719822|ref|YP_920317.1| - 0.07 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|119719822|ref|YP_920317.1| - 0.11 13.2 0.7 0.27 12.0 0.5 1.9 1 1 0 1 1 1 0 AAA domain DUF1221 PF06760.6 gi|119719823|ref|YP_920318.1| - 0.047 12.9 0.0 0.059 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1221) Nitroreductase PF00881.19 gi|119719824|ref|YP_920319.1| - 1.6e-22 80.0 0.0 1.3e-14 54.4 0.0 2.9 2 1 0 2 2 2 2 Nitroreductase family Ham1p_like PF01725.11 gi|119719825|ref|YP_920320.1| - 4.1e-50 169.7 0.0 4.6e-50 169.6 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF3219 PF11514.3 gi|119719827|ref|YP_920322.1| - 0.03 14.1 0.0 0.054 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3219) DUF3411 PF11891.3 gi|119719827|ref|YP_920322.1| - 0.087 12.5 0.1 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3411) DUF2057 PF09829.4 gi|119719831|ref|YP_920326.1| - 0.015 15.0 0.1 1.3 8.6 0.0 3.1 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2057) EphA2_TM PF14575.1 gi|119719831|ref|YP_920326.1| - 9 6.7 7.6 11 6.5 2.9 2.5 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain ATP_bind_3 PF01171.15 gi|119719832|ref|YP_920327.1| - 7.7e-12 45.0 0.0 2.5e-11 43.4 0.0 1.7 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|119719832|ref|YP_920327.1| - 1.8e-06 26.7 0.0 2.4e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|119719832|ref|YP_920327.1| - 0.0025 17.2 0.0 0.0039 16.5 0.0 1.3 1 0 0 1 1 1 1 ATP-binding region DUF208 PF02677.9 gi|119719832|ref|YP_920327.1| - 0.023 14.5 0.0 0.13 12.0 0.0 2.1 2 1 0 3 3 3 0 Uncharacterized BCR, COG1636 RecR PF02132.10 gi|119719832|ref|YP_920327.1| - 0.21 11.0 9.1 0.73 9.3 0.5 2.7 3 0 0 3 3 3 0 RecR protein ThiS PF02597.15 gi|119719833|ref|YP_920328.1| - 5.9e-09 36.2 1.1 6.8e-09 36.0 0.7 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|119719833|ref|YP_920328.1| - 1.4e-05 24.4 1.1 1.8e-05 24.1 0.7 1.1 1 0 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.16 gi|119719833|ref|YP_920328.1| - 0.015 15.1 0.2 0.017 14.9 0.1 1.1 1 0 0 1 1 1 0 TGS domain SLBB PF10531.4 gi|119719833|ref|YP_920328.1| - 0.02 14.7 1.3 0.55 10.1 0.0 2.5 2 1 0 2 2 2 0 SLBB domain CRS1_YhbY PF01985.16 gi|119719834|ref|YP_920329.1| - 6.2e-16 58.1 0.1 7.5e-16 57.9 0.1 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Metallophos_2 PF12850.2 gi|119719835|ref|YP_920330.1| - 1.2e-07 31.7 0.0 2e-07 30.9 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|119719835|ref|YP_920330.1| - 0.00011 21.6 0.2 0.00028 20.3 0.1 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HMG-CoA_red PF00368.13 gi|119719836|ref|YP_920331.1| - 1.4e-91 306.9 5.1 1.8e-91 306.6 3.5 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF3759 PF12585.3 gi|119719836|ref|YP_920331.1| - 0.08 12.8 0.8 0.25 11.2 0.0 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3759) Abi PF02517.11 gi|119719837|ref|YP_920332.1| - 3e-09 36.8 10.2 1.5e-08 34.6 7.1 2.2 1 1 0 1 1 1 1 CAAX protease self-immunity Oleosin PF01277.12 gi|119719837|ref|YP_920332.1| - 2.8 7.5 6.0 0.57 9.7 1.5 1.8 1 1 0 1 1 1 0 Oleosin DUF3816 PF12822.2 gi|119719838|ref|YP_920333.1| - 7.5e-06 25.9 14.9 9.8e-06 25.5 10.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) PDR_assoc PF08370.6 gi|119719838|ref|YP_920333.1| - 0.15 11.6 0.6 0.38 10.2 0.4 1.8 1 0 0 1 1 1 0 Plant PDR ABC transporter associated DEAD_assoc PF08494.6 gi|119719839|ref|YP_920334.1| - 1.3e-59 201.0 0.2 3.2e-59 199.8 0.0 1.8 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|119719839|ref|YP_920334.1| - 1.9e-27 95.7 0.0 9.2e-27 93.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|119719839|ref|YP_920334.1| - 2.8e-14 52.7 0.1 3.4e-13 49.2 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|119719839|ref|YP_920334.1| - 3.9e-08 33.3 0.0 7.9e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.24 gi|119719839|ref|YP_920334.1| - 0.0034 17.5 0.0 0.087 13.0 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SNF2_N PF00176.18 gi|119719839|ref|YP_920334.1| - 0.0034 16.2 0.0 0.011 14.6 0.0 1.8 2 0 0 2 2 2 1 SNF2 family N-terminal domain PhoH PF02562.11 gi|119719839|ref|YP_920334.1| - 0.024 13.8 0.0 0.067 12.4 0.0 1.8 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.1 gi|119719839|ref|YP_920334.1| - 0.028 14.5 0.0 0.23 11.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain Peptidase_M28 PF04389.12 gi|119719840|ref|YP_920335.1| - 7.6e-13 48.5 0.0 1.4e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|119719840|ref|YP_920335.1| - 7.9e-05 22.2 0.0 0.00016 21.2 0.0 1.5 1 0 0 1 1 1 1 PA domain Glyco_hydro_57 PF03065.10 gi|119719841|ref|YP_920336.1| - 3.5e-37 128.1 0.5 5.9e-37 127.4 0.4 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 YidC_periplas PF14849.1 gi|119719841|ref|YP_920336.1| - 1.9e-11 44.3 7.7 2.2e-08 34.3 0.6 4.3 2 1 1 3 3 3 2 YidC periplasmic domain A2M_N_2 PF07703.9 gi|119719841|ref|YP_920336.1| - 0.00033 20.4 0.2 0.0011 18.7 0.2 1.9 1 0 0 1 1 1 1 Alpha-2-macroglobulin family N-terminal region Transglut_C PF00927.17 gi|119719841|ref|YP_920336.1| - 0.0018 18.2 0.1 0.61 10.1 0.0 3.1 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain Alpha-amylase_C PF02806.13 gi|119719842|ref|YP_920337.1| - 0.012 15.7 0.1 3.1 7.9 0.0 2.7 2 0 0 2 2 2 0 Alpha amylase, C-terminal all-beta domain CagX PF03524.10 gi|119719842|ref|YP_920337.1| - 0.16 11.1 2.2 8.5 5.5 0.2 2.2 2 0 0 2 2 2 0 Conjugal transfer protein DHHA1 PF02272.14 gi|119719843|ref|YP_920338.1| - 0.0013 18.3 0.1 0.0028 17.3 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain VWA_2 PF13519.1 gi|119719843|ref|YP_920338.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain DAO PF01266.19 gi|119719844|ref|YP_920339.1| - 5.7e-71 239.3 1.3 6.4e-71 239.1 0.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|119719844|ref|YP_920339.1| - 5.9e-10 38.5 5.3 6e-08 31.9 3.7 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|119719844|ref|YP_920339.1| - 5e-06 25.8 0.0 8.3e-06 25.1 0.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|119719844|ref|YP_920339.1| - 8.7e-06 24.4 0.3 0.035 12.5 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|119719844|ref|YP_920339.1| - 1.7e-05 24.7 2.7 3.8e-05 23.6 1.9 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|119719844|ref|YP_920339.1| - 1.9e-05 24.6 2.0 0.0042 16.9 1.4 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.14 gi|119719844|ref|YP_920339.1| - 3.9e-05 22.9 0.7 0.0029 16.7 0.1 2.2 2 0 0 2 2 2 1 GMC oxidoreductase Thi4 PF01946.12 gi|119719844|ref|YP_920339.1| - 0.00019 20.5 0.4 0.00034 19.7 0.2 1.4 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|119719844|ref|YP_920339.1| - 0.00059 18.8 2.3 0.025 13.5 0.7 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|119719844|ref|YP_920339.1| - 0.0053 15.8 1.5 0.013 14.5 0.9 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|119719844|ref|YP_920339.1| - 0.009 16.3 1.9 0.18 12.2 1.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|119719844|ref|YP_920339.1| - 0.021 14.8 1.7 0.075 13.0 1.2 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|119719844|ref|YP_920339.1| - 0.022 13.6 0.5 0.37 9.5 0.3 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|119719844|ref|YP_920339.1| - 0.23 11.2 2.7 0.37 10.5 0.3 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer4 PF00037.22 gi|119719845|ref|YP_920340.1| - 2.2e-11 42.8 13.2 2.6e-08 33.1 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|119719845|ref|YP_920340.1| - 3.1e-09 37.0 10.7 4.8e-09 36.4 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719845|ref|YP_920340.1| - 2.7e-08 33.4 22.4 1.9e-05 24.3 8.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119719845|ref|YP_920340.1| - 1.6e-07 31.4 10.1 2.7e-07 30.7 7.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719845|ref|YP_920340.1| - 2.1e-07 30.8 0.8 0.00047 20.1 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119719845|ref|YP_920340.1| - 2.4e-07 30.5 10.7 8.1e-05 22.6 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|119719845|ref|YP_920340.1| - 5.1e-07 29.2 16.5 2.5e-05 23.9 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119719845|ref|YP_920340.1| - 1e-05 25.2 11.3 2.5e-05 24.0 7.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719845|ref|YP_920340.1| - 1.6e-05 24.5 15.0 0.00022 20.9 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|119719845|ref|YP_920340.1| - 9.3e-05 22.9 9.4 0.00011 22.6 0.9 2.8 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|119719845|ref|YP_920340.1| - 0.00013 22.6 11.8 0.054 14.2 2.4 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|119719845|ref|YP_920340.1| - 0.0067 16.7 8.0 0.012 15.9 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|119719845|ref|YP_920340.1| - 0.0076 16.5 10.3 0.017 15.4 0.7 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119719845|ref|YP_920340.1| - 0.049 14.0 12.5 0.45 10.9 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|119719845|ref|YP_920340.1| - 0.12 12.2 3.2 0.31 10.9 2.3 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|119719845|ref|YP_920340.1| - 0.32 11.6 21.4 0.94 10.1 5.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer2_4 PF13510.1 gi|119719846|ref|YP_920341.1| - 9.7e-23 79.7 0.1 2.4e-22 78.5 0.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.9 gi|119719846|ref|YP_920341.1| - 8.1e-22 78.0 0.1 2e-21 76.7 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|119719846|ref|YP_920341.1| - 1.5e-12 48.0 1.5 0.00012 22.2 0.0 3.7 1 1 3 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|119719846|ref|YP_920341.1| - 3.6e-12 45.8 13.1 9.4e-05 21.4 0.0 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|119719846|ref|YP_920341.1| - 1.9e-11 43.8 7.6 1.4e-07 31.3 0.3 3.1 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|119719846|ref|YP_920341.1| - 7.4e-10 38.2 14.6 2.4e-07 29.9 0.2 3.6 3 1 1 4 4 4 2 FAD binding domain HI0933_like PF03486.9 gi|119719846|ref|YP_920341.1| - 7.7e-10 37.7 3.8 5e-05 21.9 0.1 3.4 2 1 1 3 3 3 3 HI0933-like protein Pyr_redox PF00070.22 gi|119719846|ref|YP_920341.1| - 1e-09 38.6 12.3 0.00021 21.6 1.6 5.1 6 0 0 6 6 4 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|119719846|ref|YP_920341.1| - 1.8e-09 37.0 1.1 4.6e-06 25.9 0.0 2.5 2 0 0 2 2 2 2 Thi4 family GIDA PF01134.17 gi|119719846|ref|YP_920341.1| - 1.2e-08 34.2 5.1 0.00016 20.6 0.1 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|119719846|ref|YP_920341.1| - 7.3e-08 31.8 2.7 7.5e-05 21.9 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|119719846|ref|YP_920341.1| - 5.7e-07 28.9 0.1 5.7e-07 28.9 0.1 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|119719846|ref|YP_920341.1| - 0.00021 21.0 3.5 0.19 11.4 0.0 3.9 4 0 0 4 4 4 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|119719846|ref|YP_920341.1| - 0.00074 18.5 0.1 0.19 10.6 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|119719846|ref|YP_920341.1| - 0.0011 18.6 4.5 0.19 11.3 0.0 3.0 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|119719846|ref|YP_920341.1| - 0.0012 17.9 3.5 0.96 8.4 0.1 3.5 3 1 1 4 4 4 2 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|119719846|ref|YP_920341.1| - 0.0018 17.2 2.1 0.049 12.5 0.0 2.7 3 0 0 3 3 3 1 Lycopene cyclase protein ApbA PF02558.11 gi|119719846|ref|YP_920341.1| - 0.015 14.7 1.2 0.023 14.1 0.1 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|119719846|ref|YP_920341.1| - 0.078 13.2 5.8 1.1 9.5 0.2 2.8 3 0 0 3 3 3 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|119719846|ref|YP_920341.1| - 0.095 12.8 0.4 5.4 7.1 0.2 2.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|119719846|ref|YP_920341.1| - 0.17 12.2 1.4 3.3 8.2 0.2 3.0 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF2862 PF11061.3 gi|119719847|ref|YP_920342.1| - 0.14 11.8 0.1 3 7.6 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2862) Lactamase_B PF00753.22 gi|119719849|ref|YP_920344.1| - 2.7e-19 69.5 0.0 3.3e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CBS PF00571.23 gi|119719850|ref|YP_920345.1| - 1.4e-28 98.3 8.9 3.6e-15 55.4 1.3 3.1 3 0 0 3 3 3 2 CBS domain HrcA_DNA-bdg PF03444.10 gi|119719850|ref|YP_920345.1| - 1.2e-23 82.2 0.3 1.4e-22 78.8 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|119719850|ref|YP_920345.1| - 8.7e-09 35.3 0.1 2.7e-08 33.8 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|119719850|ref|YP_920345.1| - 7.7e-07 28.6 0.0 1.5e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|119719850|ref|YP_920345.1| - 3.1e-05 23.2 0.0 0.00012 21.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|119719850|ref|YP_920345.1| - 3.7e-05 23.2 0.1 0.0013 18.2 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|119719850|ref|YP_920345.1| - 7.7e-05 22.3 0.1 0.00027 20.5 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|119719850|ref|YP_920345.1| - 7.9e-05 22.2 0.0 0.00031 20.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|119719850|ref|YP_920345.1| - 0.0001 22.0 0.2 0.0015 18.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|119719850|ref|YP_920345.1| - 0.00024 20.4 0.0 0.00087 18.6 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|119719850|ref|YP_920345.1| - 0.0003 21.0 0.0 0.0014 18.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|119719850|ref|YP_920345.1| - 0.00047 19.7 0.2 0.0026 17.4 0.0 2.4 3 0 0 3 3 1 1 MarR family HTH_15 PF12324.3 gi|119719850|ref|YP_920345.1| - 0.0026 17.3 0.0 0.0061 16.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase Sigma70_r3 PF04539.11 gi|119719850|ref|YP_920345.1| - 0.0055 16.5 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_28 PF13518.1 gi|119719850|ref|YP_920345.1| - 0.0078 16.1 0.1 0.065 13.2 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|119719850|ref|YP_920345.1| - 0.008 15.8 0.0 0.091 12.4 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|119719850|ref|YP_920345.1| - 0.013 15.4 0.1 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.11 gi|119719850|ref|YP_920345.1| - 0.019 14.2 0.2 0.15 11.4 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|119719850|ref|YP_920345.1| - 0.019 14.5 0.3 6.1 6.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|119719850|ref|YP_920345.1| - 0.03 14.4 0.0 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|119719850|ref|YP_920345.1| - 0.034 13.6 0.1 0.33 10.4 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 FaeA PF04703.7 gi|119719850|ref|YP_920345.1| - 0.046 13.8 0.0 0.14 12.3 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein LexA_DNA_bind PF01726.11 gi|119719850|ref|YP_920345.1| - 0.057 12.9 0.0 0.17 11.4 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Penicillinase_R PF03965.11 gi|119719850|ref|YP_920345.1| - 0.058 13.4 0.0 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor HTH_Tnp_ISL3 PF13542.1 gi|119719850|ref|YP_920345.1| - 0.07 12.3 0.1 0.67 9.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.1 gi|119719850|ref|YP_920345.1| - 0.12 12.1 0.0 0.33 10.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF650 PF04894.7 gi|119719851|ref|YP_920346.1| - 5.1e-93 311.4 0.0 6.2e-93 311.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|119719851|ref|YP_920346.1| - 8.1e-33 112.3 0.0 1.5e-32 111.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Aldo_ket_red PF00248.16 gi|119719852|ref|YP_920347.1| - 2.3e-63 213.6 0.0 2.6e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PBP PF01161.15 gi|119719853|ref|YP_920348.1| - 1e-34 119.4 0.0 1.2e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF2341 PF10102.4 gi|119719855|ref|YP_920350.1| - 2.2e-25 88.6 0.2 3.5e-24 84.7 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) DUF1080 PF06439.6 gi|119719855|ref|YP_920350.1| - 0.00014 21.8 0.1 0.00046 20.1 0.1 1.9 1 1 0 1 1 1 1 Domain of Unknown Function (DUF1080) FlgD_ig PF13860.1 gi|119719855|ref|YP_920350.1| - 0.034 13.8 0.5 0.15 11.8 0.1 2.3 2 0 0 2 2 2 0 FlgD Ig-like domain Thymidylat_synt PF00303.14 gi|119719856|ref|YP_920351.1| - 1.5e-22 79.9 0.0 5.8e-22 77.9 0.0 1.7 1 1 1 2 2 2 1 Thymidylate synthase DUF4346 PF14251.1 gi|119719856|ref|YP_920351.1| - 3.1e-06 26.9 0.1 7.2e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) GHMP_kinases_C PF08544.8 gi|119719856|ref|YP_920351.1| - 0.019 15.1 1.1 0.18 12.0 0.0 3.2 4 0 0 4 4 4 0 GHMP kinases C terminal Aminotran_5 PF00266.14 gi|119719857|ref|YP_920352.1| - 2.6e-134 447.6 0.0 2.9e-134 447.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|119719857|ref|YP_920352.1| - 2.5e-08 33.2 0.0 3.5e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|119719857|ref|YP_920352.1| - 1e-05 24.8 0.0 1.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|119719857|ref|YP_920352.1| - 1.4e-05 23.6 0.0 3.7e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|119719857|ref|YP_920352.1| - 0.0049 15.6 0.0 0.01 14.6 0.0 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.14 gi|119719857|ref|YP_920352.1| - 0.008 14.6 0.0 0.015 13.7 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain tRNA-synt_2d PF01409.15 gi|119719858|ref|YP_920353.1| - 1.5e-79 266.7 0.0 2e-79 266.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|119719858|ref|YP_920353.1| - 9.2e-05 21.3 0.6 0.14 10.8 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.1 gi|119719858|ref|YP_920353.1| - 0.0077 16.5 2.0 0.1 12.9 0.1 3.2 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|119719858|ref|YP_920353.1| - 0.011 15.5 0.3 4.2 7.2 0.0 3.0 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|119719858|ref|YP_920353.1| - 0.046 13.4 0.4 0.19 11.4 0.1 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|119719858|ref|YP_920353.1| - 1.4 8.7 5.9 0.4 10.5 0.5 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain B5 PF03484.10 gi|119719859|ref|YP_920354.1| - 7.3e-18 64.1 0.1 3.6e-14 52.3 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|119719859|ref|YP_920354.1| - 7.2e-14 51.6 0.0 1.3e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|119719859|ref|YP_920354.1| - 9.4e-08 31.5 0.0 2.9e-07 29.9 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) HAD_2 PF13419.1 gi|119719860|ref|YP_920355.1| - 8.6e-22 78.1 0.0 1.2e-21 77.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|119719860|ref|YP_920355.1| - 1.7e-09 37.2 0.0 1.3e-08 34.4 0.0 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|119719860|ref|YP_920355.1| - 2.9e-08 34.3 0.0 7.3e-08 33.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|119719860|ref|YP_920355.1| - 0.0052 16.6 0.1 2.6 7.9 0.0 2.7 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase HTH_34 PF13601.1 gi|119719861|ref|YP_920356.1| - 2.4e-14 53.1 0.0 2.8e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|119719861|ref|YP_920356.1| - 2.2e-05 24.0 0.0 3.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|119719861|ref|YP_920356.1| - 0.00017 21.2 0.0 0.00027 20.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|119719861|ref|YP_920356.1| - 0.00018 21.0 0.0 0.00029 20.4 0.0 1.4 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|119719861|ref|YP_920356.1| - 0.00025 20.7 0.1 0.0022 17.7 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain HxlR PF01638.12 gi|119719861|ref|YP_920356.1| - 0.00079 19.0 0.0 0.0014 18.1 0.0 1.5 1 1 1 2 2 2 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|119719861|ref|YP_920356.1| - 0.00095 19.4 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|119719861|ref|YP_920356.1| - 0.0012 18.5 0.0 0.0043 16.7 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|119719861|ref|YP_920356.1| - 0.0061 16.3 0.1 0.0087 15.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|119719861|ref|YP_920356.1| - 0.011 15.1 0.0 0.038 13.3 0.0 2.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF2984 PF11203.3 gi|119719861|ref|YP_920356.1| - 0.012 15.7 0.5 0.016 15.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2984) DUF480 PF04337.7 gi|119719861|ref|YP_920356.1| - 0.036 13.9 0.2 2.1 8.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF480 SirB PF04247.7 gi|119719862|ref|YP_920357.1| - 0.09 12.5 0.4 0.09 12.5 0.2 2.7 1 1 1 2 2 2 0 Invasion gene expression up-regulator, SirB YfhO PF09586.5 gi|119719862|ref|YP_920357.1| - 0.24 9.3 8.4 0.27 9.2 5.8 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF805 PF05656.9 gi|119719862|ref|YP_920357.1| - 5.6 6.8 10.0 0.26 11.0 2.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF805) LEA_2 PF03168.8 gi|119719864|ref|YP_920359.1| - 1.1e-12 48.1 0.0 1.7e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Late embryogenesis abundant protein Peripla_BP_3 PF13377.1 gi|119719865|ref|YP_920360.1| - 0.11 12.4 0.0 0.33 10.9 0.0 1.7 1 1 0 1 1 1 0 Periplasmic binding protein-like domain AAA_12 PF13087.1 gi|119719866|ref|YP_920361.1| - 1.5e-44 151.7 0.0 2.7e-44 150.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|119719866|ref|YP_920361.1| - 5.2e-39 134.2 0.0 8.7e-39 133.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|119719866|ref|YP_920361.1| - 3e-15 56.3 0.1 2.3e-08 33.8 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|119719866|ref|YP_920361.1| - 1.7e-13 50.1 0.7 6e-12 45.1 0.3 2.4 2 0 0 2 2 2 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|119719866|ref|YP_920361.1| - 2.5e-11 43.5 0.2 2.6e-05 23.8 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD_C PF13361.1 gi|119719866|ref|YP_920361.1| - 5.9e-07 29.2 0.2 0.00028 20.4 0.0 2.6 2 1 1 3 3 3 1 UvrD-like helicase C-terminal domain MobB PF03205.9 gi|119719866|ref|YP_920361.1| - 1.5e-06 27.9 0.0 7.1e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|119719866|ref|YP_920361.1| - 1.3e-05 25.2 0.7 0.0002 21.3 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain UvrD-helicase PF00580.16 gi|119719866|ref|YP_920361.1| - 1.5e-05 24.4 0.3 0.0037 16.6 0.1 2.4 1 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain SRP54 PF00448.17 gi|119719866|ref|YP_920361.1| - 2e-05 24.1 0.0 6.9e-05 22.3 0.0 1.9 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA PF00004.24 gi|119719866|ref|YP_920361.1| - 5e-05 23.5 0.4 0.00024 21.3 0.1 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|119719866|ref|YP_920361.1| - 6.6e-05 23.2 0.0 0.00013 22.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.1 gi|119719866|ref|YP_920361.1| - 9.2e-05 22.3 0.0 0.00041 20.2 0.0 2.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|119719866|ref|YP_920361.1| - 0.00012 21.5 0.4 0.00042 19.7 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_10 PF12846.2 gi|119719866|ref|YP_920361.1| - 0.00022 20.7 0.0 0.012 15.0 0.1 2.7 1 1 1 2 2 2 1 AAA-like domain PhoH PF02562.11 gi|119719866|ref|YP_920361.1| - 0.00023 20.4 0.0 0.0061 15.8 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.1 gi|119719866|ref|YP_920361.1| - 0.00023 21.3 2.0 0.0028 17.8 0.5 2.9 2 1 0 2 2 1 1 AAA domain CbiA PF01656.18 gi|119719866|ref|YP_920361.1| - 0.00025 20.4 0.5 0.002 17.5 0.3 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain UvrD_C_2 PF13538.1 gi|119719866|ref|YP_920361.1| - 0.00029 20.9 0.0 0.001 19.1 0.0 2.0 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ArsA_ATPase PF02374.10 gi|119719866|ref|YP_920361.1| - 0.0013 17.7 0.6 0.022 13.8 0.0 2.6 2 1 1 3 3 3 1 Anion-transporting ATPase TrwB_AAD_bind PF10412.4 gi|119719866|ref|YP_920361.1| - 0.0017 17.0 0.0 0.0076 14.9 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.12 gi|119719866|ref|YP_920361.1| - 0.0018 17.7 0.0 0.006 16.0 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|119719866|ref|YP_920361.1| - 0.002 18.9 2.1 0.012 16.4 1.4 2.4 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|119719866|ref|YP_920361.1| - 0.0022 16.8 0.8 0.01 14.6 0.1 2.1 2 0 0 2 2 2 1 ArgK protein ResIII PF04851.10 gi|119719866|ref|YP_920361.1| - 0.0022 17.8 0.0 0.01 15.6 0.0 2.1 3 0 0 3 3 1 1 Type III restriction enzyme, res subunit AAA_18 PF13238.1 gi|119719866|ref|YP_920361.1| - 0.0043 17.3 1.5 0.059 13.6 0.4 3.0 3 1 0 3 3 2 1 AAA domain PIF1 PF05970.9 gi|119719866|ref|YP_920361.1| - 0.0045 15.9 0.0 0.048 12.6 0.0 2.1 2 0 0 2 2 2 1 PIF1-like helicase AAA_5 PF07728.9 gi|119719866|ref|YP_920361.1| - 0.0049 16.6 0.8 0.014 15.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|119719866|ref|YP_920361.1| - 0.0052 15.7 0.0 0.0085 15.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Helicase_RecD PF05127.9 gi|119719866|ref|YP_920361.1| - 0.0056 16.3 0.1 0.33 10.5 0.0 2.5 2 0 0 2 2 2 1 Helicase Arch_ATPase PF01637.13 gi|119719866|ref|YP_920361.1| - 0.0066 16.1 0.1 0.023 14.3 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|119719866|ref|YP_920361.1| - 0.0074 15.9 0.1 0.022 14.4 0.0 1.8 2 0 0 2 2 1 1 NACHT domain NTPase_1 PF03266.10 gi|119719866|ref|YP_920361.1| - 0.0083 15.8 0.6 0.038 13.7 0.1 2.4 2 0 0 2 2 2 1 NTPase Zeta_toxin PF06414.7 gi|119719866|ref|YP_920361.1| - 0.0093 15.0 0.5 0.019 14.0 0.0 1.7 2 0 0 2 2 1 1 Zeta toxin UPF0079 PF02367.12 gi|119719866|ref|YP_920361.1| - 0.011 15.4 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|119719866|ref|YP_920361.1| - 0.013 15.4 0.2 0.057 13.3 0.1 2.2 2 0 0 2 2 1 0 AAA domain Rad17 PF03215.10 gi|119719866|ref|YP_920361.1| - 0.025 13.2 0.0 0.042 12.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein KaiC PF06745.8 gi|119719866|ref|YP_920361.1| - 0.031 13.4 0.0 0.075 12.1 0.0 1.7 1 0 0 1 1 1 0 KaiC DUF2075 PF09848.4 gi|119719866|ref|YP_920361.1| - 0.036 13.0 0.2 0.95 8.3 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) EzrA PF06160.7 gi|119719866|ref|YP_920361.1| - 0.04 12.1 0.1 0.063 11.4 0.1 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA AAA_29 PF13555.1 gi|119719866|ref|YP_920361.1| - 0.063 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|119719866|ref|YP_920361.1| - 0.068 12.7 1.8 0.22 11.0 0.1 2.4 3 0 0 3 3 2 0 AAA domain AAA_14 PF13173.1 gi|119719866|ref|YP_920361.1| - 0.095 12.6 0.1 0.81 9.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|119719866|ref|YP_920361.1| - 0.099 11.8 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 FtsK_SpoIIIE PF01580.13 gi|119719866|ref|YP_920361.1| - 0.11 11.9 0.2 0.31 10.4 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|119719866|ref|YP_920361.1| - 0.11 11.6 0.0 0.37 9.9 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|119719866|ref|YP_920361.1| - 0.21 11.7 0.0 0.5 10.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|119719866|ref|YP_920361.1| - 7.8 6.7 6.8 2.5e+02 1.8 4.7 2.5 1 1 0 1 1 1 0 AAA domain Antitoxin-MazE PF04014.13 gi|119719867|ref|YP_920362.1| - 3.2e-10 39.4 3.2 5.5e-10 38.7 2.2 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE SymE_toxin PF08845.5 gi|119719867|ref|YP_920362.1| - 0.035 13.9 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system Spore_III_AB PF09548.5 gi|119719868|ref|YP_920363.1| - 0.019 14.6 0.4 0.025 14.3 0.3 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) IncA PF04156.9 gi|119719868|ref|YP_920363.1| - 0.084 12.4 0.5 0.1 12.1 0.3 1.2 1 0 0 1 1 1 0 IncA protein bZIP_1 PF00170.16 gi|119719868|ref|YP_920363.1| - 0.15 12.0 1.6 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 bZIP transcription factor RHH_1 PF01402.16 gi|119719868|ref|YP_920363.1| - 0.23 11.4 1.7 0.7 9.8 0.0 2.4 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family Toxin_36 PF10550.4 gi|119719868|ref|YP_920363.1| - 1.2 10.4 9.8 3.5 9.0 1.5 2.5 2 0 0 2 2 2 0 Conantokin-G mollusc-toxin AAA_14 PF13173.1 gi|119719869|ref|YP_920364.1| - 1e-23 83.5 0.0 2.2e-23 82.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|119719869|ref|YP_920364.1| - 5.2e-08 32.9 0.0 9e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|119719869|ref|YP_920364.1| - 2.1e-06 27.6 1.0 8.4e-06 25.6 0.0 2.3 2 1 0 2 2 2 1 Archaeal ATPase AAA_35 PF14516.1 gi|119719869|ref|YP_920364.1| - 0.0038 15.9 0.0 0.0068 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|119719869|ref|YP_920364.1| - 0.032 14.2 0.0 0.086 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.17 gi|119719869|ref|YP_920364.1| - 0.081 13.1 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|119719869|ref|YP_920364.1| - 0.087 12.4 0.0 2.3 7.8 0.0 2.5 1 1 1 2 2 2 0 NACHT domain MobB PF03205.9 gi|119719869|ref|YP_920364.1| - 0.11 12.2 1.5 0.18 11.4 0.1 2.2 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|119719869|ref|YP_920364.1| - 0.13 11.9 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_11 PF13086.1 gi|119719869|ref|YP_920364.1| - 0.16 11.4 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF4661 PF15576.1 gi|119719871|ref|YP_920366.1| - 0.11 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4661) DUF2075 PF09848.4 gi|119719872|ref|YP_920367.1| - 3.2e-68 230.2 0.0 4e-68 229.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NERD PF08378.6 gi|119719872|ref|YP_920367.1| - 0.00048 20.3 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 Nuclease-related domain AAA_16 PF13191.1 gi|119719872|ref|YP_920367.1| - 0.00067 19.6 0.1 0.0016 18.4 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain DEAD PF00270.24 gi|119719872|ref|YP_920367.1| - 0.0009 18.7 0.0 0.054 12.9 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|119719872|ref|YP_920367.1| - 0.0014 18.1 0.1 0.0034 16.8 0.1 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|119719872|ref|YP_920367.1| - 0.0041 16.8 0.2 0.01 15.5 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain T2SE PF00437.15 gi|119719872|ref|YP_920367.1| - 0.0051 15.7 0.0 0.0079 15.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.10 gi|119719872|ref|YP_920367.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PIF1 PF05970.9 gi|119719872|ref|YP_920367.1| - 0.014 14.3 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase PhoH PF02562.11 gi|119719872|ref|YP_920367.1| - 0.023 13.9 0.2 0.28 10.3 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein TrwB_AAD_bind PF10412.4 gi|119719872|ref|YP_920367.1| - 0.025 13.2 0.0 0.038 12.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|119719872|ref|YP_920367.1| - 0.05 13.7 0.1 0.27 11.3 0.1 2.3 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|119719872|ref|YP_920367.1| - 0.12 11.4 0.1 0.28 10.2 0.1 1.5 1 0 0 1 1 1 0 KaiC Big_3_4 PF13754.1 gi|119719874|ref|YP_920369.1| - 0.021 15.1 0.0 0.063 13.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) zinc_ribbon_5 PF13719.1 gi|119719876|ref|YP_920371.1| - 1e-05 24.9 0.1 0.056 13.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119719876|ref|YP_920371.1| - 2.1e-05 24.1 0.2 0.08 12.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|119719876|ref|YP_920371.1| - 0.00045 19.3 1.3 0.16 11.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|119719876|ref|YP_920371.1| - 0.00071 19.7 3.4 0.36 11.2 0.3 2.3 2 0 0 2 2 2 2 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|119719876|ref|YP_920371.1| - 0.00082 19.2 0.1 1.4 8.9 0.0 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|119719876|ref|YP_920371.1| - 0.00096 19.1 0.8 0.31 11.1 0.0 2.3 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|119719876|ref|YP_920371.1| - 0.0017 18.5 0.1 0.0024 18.1 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|119719876|ref|YP_920371.1| - 0.0018 18.0 3.5 0.87 9.4 0.2 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|119719876|ref|YP_920371.1| - 0.0022 17.9 1.1 1.6 8.8 0.2 2.2 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_4 PF13894.1 gi|119719876|ref|YP_920371.1| - 0.0031 17.7 0.8 0.75 10.2 0.1 2.4 2 0 0 2 2 2 1 C2H2-type zinc finger CpXC PF14353.1 gi|119719876|ref|YP_920371.1| - 0.0053 16.7 1.1 2.5 8.0 0.0 2.1 1 1 0 1 1 1 1 CpXC protein zf-C2HC_2 PF13913.1 gi|119719876|ref|YP_920371.1| - 0.0066 16.0 7.2 0.51 10.0 0.7 2.4 2 0 0 2 2 2 2 zinc-finger of a C2HC-type zf-C4_Topoisom PF01396.14 gi|119719876|ref|YP_920371.1| - 0.0074 15.7 0.7 1.1 8.7 0.0 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Terminase_GpA PF05876.7 gi|119719876|ref|YP_920371.1| - 0.0096 14.3 0.2 0.011 14.1 0.1 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) Zn_Tnp_IS1 PF03811.8 gi|119719876|ref|YP_920371.1| - 0.014 14.8 0.4 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain UPF0547 PF10571.4 gi|119719876|ref|YP_920371.1| - 0.014 15.0 6.4 0.039 13.6 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|119719876|ref|YP_920371.1| - 0.017 14.4 0.8 1.1 8.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|119719876|ref|YP_920371.1| - 0.021 14.4 1.0 0.79 9.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|119719876|ref|YP_920371.1| - 0.021 14.2 6.3 0.96 9.0 1.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|119719876|ref|YP_920371.1| - 0.023 13.8 4.0 0.073 12.2 2.8 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF35_N PF12172.3 gi|119719876|ref|YP_920371.1| - 0.024 14.5 1.9 3.9 7.5 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|119719876|ref|YP_920371.1| - 0.025 14.2 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|119719876|ref|YP_920371.1| - 0.029 14.1 2.4 0.95 9.3 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_3 PF14369.1 gi|119719876|ref|YP_920371.1| - 0.031 14.2 1.3 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-tcix PF14952.1 gi|119719876|ref|YP_920371.1| - 0.031 13.5 1.6 1 8.7 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding ADK_lid PF05191.9 gi|119719876|ref|YP_920371.1| - 0.033 13.8 3.0 0.059 13.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF2387 PF09526.5 gi|119719876|ref|YP_920371.1| - 0.066 13.1 0.2 1.3 9.0 0.0 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-C2H2 PF00096.21 gi|119719876|ref|YP_920371.1| - 0.068 13.5 3.1 4.6 7.7 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type DZR PF12773.2 gi|119719876|ref|YP_920371.1| - 0.1 12.4 1.4 0.6 9.9 1.1 1.8 1 1 1 2 2 2 0 Double zinc ribbon DUF1272 PF06906.6 gi|119719876|ref|YP_920371.1| - 0.12 12.2 0.3 1.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DUF2225 PF09986.4 gi|119719876|ref|YP_920371.1| - 0.13 11.7 0.7 1.1 8.6 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) OrfB_Zn_ribbon PF07282.6 gi|119719876|ref|YP_920371.1| - 0.13 11.9 2.4 1.9 8.1 1.7 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF329 PF03884.9 gi|119719876|ref|YP_920371.1| - 0.14 11.7 0.1 17 5.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DUF2082 PF09855.4 gi|119719876|ref|YP_920371.1| - 0.14 12.0 0.2 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-AN1 PF01428.11 gi|119719876|ref|YP_920371.1| - 0.17 11.7 1.2 11 5.9 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger A2L_zn_ribbon PF08792.5 gi|119719876|ref|YP_920371.1| - 0.18 11.3 1.4 3.4 7.2 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|119719876|ref|YP_920371.1| - 0.18 11.6 2.6 1.4 8.7 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-IS66 PF13005.2 gi|119719876|ref|YP_920371.1| - 0.27 11.2 2.7 2.8 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RanBP PF00641.13 gi|119719876|ref|YP_920371.1| - 0.32 10.1 3.0 4 6.6 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-Mss51 PF13824.1 gi|119719876|ref|YP_920371.1| - 2 8.3 5.3 13 5.7 0.3 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Ogr_Delta PF04606.7 gi|119719876|ref|YP_920371.1| - 2.3 7.9 4.4 9 6.0 0.2 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_ribbon_recom PF13408.1 gi|119719876|ref|YP_920371.1| - 2.5 8.4 4.9 13 6.1 0.5 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain gag-asp_proteas PF13975.1 gi|119719877|ref|YP_920372.1| - 1.2e-07 31.4 0.2 2.4e-07 30.4 0.1 1.6 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.1 gi|119719877|ref|YP_920372.1| - 2.8e-07 30.9 0.1 4.2e-07 30.3 0.1 1.5 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|119719877|ref|YP_920372.1| - 0.0028 17.5 0.0 0.0033 17.3 0.0 1.3 1 1 0 1 1 1 1 Retroviral aspartyl protease Spc7 PF08317.6 gi|119719879|ref|YP_920374.1| - 0.00026 19.7 1.5 0.0003 19.5 1.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein TMF_DNA_bd PF12329.3 gi|119719879|ref|YP_920374.1| - 0.00039 20.1 2.6 0.00087 19.0 1.8 1.6 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding Mod_r PF07200.8 gi|119719879|ref|YP_920374.1| - 0.0022 17.8 1.2 0.0033 17.3 0.8 1.2 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein Laminin_II PF06009.7 gi|119719879|ref|YP_920374.1| - 0.0053 16.5 0.3 0.0088 15.7 0.2 1.3 1 0 0 1 1 1 1 Laminin Domain II Rab5-bind PF09311.6 gi|119719879|ref|YP_920374.1| - 0.0094 15.8 4.5 0.014 15.2 3.1 1.3 1 0 0 1 1 1 1 Rabaptin-like protein Reo_sigmaC PF04582.7 gi|119719879|ref|YP_920374.1| - 0.0096 15.1 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Seryl_tRNA_N PF02403.17 gi|119719879|ref|YP_920374.1| - 0.012 15.6 0.5 0.021 14.8 0.4 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Transposase_22 PF02994.9 gi|119719879|ref|YP_920374.1| - 0.013 14.0 3.4 0.017 13.6 2.3 1.1 1 0 0 1 1 1 0 L1 transposable element APG6 PF04111.7 gi|119719879|ref|YP_920374.1| - 0.013 14.6 2.4 0.016 14.2 1.6 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 IncA PF04156.9 gi|119719879|ref|YP_920374.1| - 0.014 15.0 5.5 0.021 14.4 3.8 1.3 1 0 0 1 1 1 0 IncA protein ALIX_LYPXL_bnd PF13949.1 gi|119719879|ref|YP_920374.1| - 0.015 14.2 0.4 0.02 13.8 0.3 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV SlyX PF04102.7 gi|119719879|ref|YP_920374.1| - 0.038 14.3 0.6 0.098 13.0 0.4 1.8 1 0 0 1 1 1 0 SlyX AAA_27 PF13514.1 gi|119719879|ref|YP_920374.1| - 0.052 11.2 4.0 0.06 11.0 2.7 1.0 1 0 0 1 1 1 0 AAA domain CALCOCO1 PF07888.6 gi|119719879|ref|YP_920374.1| - 0.056 11.7 2.1 0.073 11.3 1.4 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like COG2 PF06148.6 gi|119719879|ref|YP_920374.1| - 0.062 13.1 2.0 0.12 12.1 1.3 1.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Dehyd-heme_bind PF09098.5 gi|119719879|ref|YP_920374.1| - 0.066 12.6 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding Cast PF10174.4 gi|119719879|ref|YP_920374.1| - 0.079 11.0 5.3 0.098 10.6 3.7 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone FlaC_arch PF05377.6 gi|119719879|ref|YP_920374.1| - 0.085 12.7 2.7 0.85 9.5 0.9 2.5 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DivIC PF04977.10 gi|119719879|ref|YP_920374.1| - 0.089 12.2 0.1 0.089 12.2 0.1 1.7 2 0 0 2 2 1 0 Septum formation initiator FlgN PF05130.7 gi|119719879|ref|YP_920374.1| - 0.095 12.9 3.6 0.55 10.4 0.4 2.4 1 1 1 2 2 2 0 FlgN protein Med4 PF10018.4 gi|119719879|ref|YP_920374.1| - 0.11 11.8 2.1 0.13 11.6 0.7 1.6 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF972 PF06156.8 gi|119719879|ref|YP_920374.1| - 0.11 12.8 2.7 0.14 12.5 1.2 1.7 1 1 0 2 2 1 0 Protein of unknown function (DUF972) TBPIP PF07106.8 gi|119719879|ref|YP_920374.1| - 0.12 11.9 1.0 0.17 11.4 0.7 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF724 PF05266.9 gi|119719879|ref|YP_920374.1| - 0.13 11.8 1.0 0.18 11.4 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Apolipoprotein PF01442.13 gi|119719879|ref|YP_920374.1| - 0.2 11.1 5.9 0.35 10.3 4.1 1.4 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Atg14 PF10186.4 gi|119719879|ref|YP_920374.1| - 0.22 10.4 4.2 0.3 9.9 2.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|119719879|ref|YP_920374.1| - 0.22 10.6 2.1 0.31 10.1 1.4 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.3 gi|119719879|ref|YP_920374.1| - 0.6 9.8 8.9 1.1 8.9 4.7 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding CENP-F_leu_zip PF10473.4 gi|119719879|ref|YP_920374.1| - 0.6 9.9 8.1 0.95 9.3 5.6 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PaREP1 PF05942.6 gi|119719880|ref|YP_920375.1| - 2.5e-33 114.3 10.2 3.6e-33 113.8 7.1 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|119719880|ref|YP_920375.1| - 0.00023 20.7 0.2 0.00081 19.0 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF357) DUF4398 PF14346.1 gi|119719880|ref|YP_920375.1| - 0.0038 17.2 8.1 0.0038 17.2 5.6 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) DUF3597 PF12200.3 gi|119719880|ref|YP_920375.1| - 0.0067 16.8 0.1 0.013 15.8 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3597) HEPN PF05168.9 gi|119719880|ref|YP_920375.1| - 0.0097 15.7 3.7 0.012 15.4 1.3 1.9 2 0 0 2 2 2 1 HEPN domain Plasmid_stabil PF05016.9 gi|119719880|ref|YP_920375.1| - 0.047 14.0 1.4 0.23 11.8 1.0 2.0 1 1 0 1 1 1 0 Plasmid stabilisation system protein Fe_dep_repress PF01325.14 gi|119719881|ref|YP_920376.1| - 1.3e-21 76.2 2.6 3.2e-21 75.0 0.4 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|119719881|ref|YP_920376.1| - 2.5e-11 43.0 0.1 5.4e-11 42.0 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|119719881|ref|YP_920376.1| - 7.8e-09 35.0 0.0 1.8e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|119719881|ref|YP_920376.1| - 1.4e-07 31.7 0.1 3.3e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|119719881|ref|YP_920376.1| - 1.9e-05 24.1 0.0 3.9e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|119719881|ref|YP_920376.1| - 6.7e-05 22.5 0.0 0.00016 21.2 0.0 1.8 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|119719881|ref|YP_920376.1| - 0.00035 20.0 0.1 0.036 13.6 0.0 2.8 3 0 0 3 3 3 1 LexA DNA binding domain HTH_Crp_2 PF13545.1 gi|119719881|ref|YP_920376.1| - 0.00038 20.1 0.0 0.00073 19.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|119719881|ref|YP_920376.1| - 0.00059 19.9 0.1 0.0012 18.8 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|119719881|ref|YP_920376.1| - 0.00069 19.2 0.3 0.0021 17.7 0.2 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|119719881|ref|YP_920376.1| - 0.0011 18.5 0.0 0.0038 16.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|119719881|ref|YP_920376.1| - 0.012 15.3 0.1 0.021 14.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.1 gi|119719881|ref|YP_920376.1| - 0.015 14.6 0.2 0.04 13.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|119719881|ref|YP_920376.1| - 0.026 14.4 0.2 0.051 13.4 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) AAA_assoc_C PF09821.4 gi|119719881|ref|YP_920376.1| - 0.026 14.7 0.1 0.091 13.0 0.1 1.8 1 1 1 2 2 2 0 C-terminal AAA-associated domain DUF1848 PF08902.6 gi|119719881|ref|YP_920376.1| - 0.032 13.7 0.0 0.034 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) HrcA_DNA-bdg PF03444.10 gi|119719881|ref|YP_920376.1| - 0.04 13.3 0.3 2.2 7.8 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_10 PF04967.7 gi|119719881|ref|YP_920376.1| - 0.049 13.2 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain TFIIE_alpha PF02002.12 gi|119719881|ref|YP_920376.1| - 0.049 13.1 0.1 0.099 12.1 0.1 1.7 1 1 0 1 1 1 0 TFIIE alpha subunit RE_AlwI PF09491.5 gi|119719881|ref|YP_920376.1| - 0.059 11.8 0.1 0.12 10.8 0.0 1.4 1 1 0 1 1 1 0 AlwI restriction endonuclease HTH_23 PF13384.1 gi|119719881|ref|YP_920376.1| - 0.066 12.8 0.1 0.34 10.6 0.0 2.3 2 1 1 3 3 2 0 Homeodomain-like domain Alba PF01918.16 gi|119719881|ref|YP_920376.1| - 0.12 11.9 0.1 0.3 10.7 0.1 1.7 1 1 0 1 1 1 0 Alba Rio2_N PF09202.6 gi|119719881|ref|YP_920376.1| - 0.12 12.4 0.2 0.4 10.7 0.0 1.9 2 1 0 2 2 2 0 Rio2, N-terminal FeoA PF04023.9 gi|119719882|ref|YP_920377.1| - 7.2e-16 57.9 0.1 9.4e-16 57.5 0.1 1.1 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.9 gi|119719883|ref|YP_920378.1| - 1.8e-19 69.4 0.6 2e-19 69.2 0.4 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|119719884|ref|YP_920379.1| - 4.3e-66 221.0 0.7 7.6e-66 220.2 0.5 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|119719884|ref|YP_920379.1| - 1.2e-48 163.4 15.1 2.1e-32 111.2 0.9 3.1 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.7 gi|119719884|ref|YP_920379.1| - 4.2e-16 58.0 4.0 4.2e-16 58.0 2.8 2.5 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|119719884|ref|YP_920379.1| - 3.6e-14 52.7 0.2 8.3e-14 51.5 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|119719884|ref|YP_920379.1| - 0.00011 21.4 0.0 0.00021 20.5 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|119719884|ref|YP_920379.1| - 0.0027 17.1 1.1 0.0077 15.6 0.3 2.0 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|119719884|ref|YP_920379.1| - 0.025 13.3 0.0 0.05 12.3 0.0 1.4 1 0 0 1 1 1 0 ArgK protein PIN PF01850.16 gi|119719886|ref|YP_920381.1| - 0.0015 18.8 0.3 0.0019 18.4 0.2 1.2 1 0 0 1 1 1 1 PIN domain DUF1827 PF08860.5 gi|119719886|ref|YP_920381.1| - 0.26 11.4 2.0 0.61 10.2 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1827) ADIP PF11559.3 gi|119719887|ref|YP_920382.1| - 0.012 15.5 0.4 0.016 15.1 0.3 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Syntaxin PF00804.20 gi|119719887|ref|YP_920382.1| - 0.024 14.7 0.9 0.034 14.3 0.6 1.2 1 0 0 1 1 1 0 Syntaxin Tropomyosin PF00261.15 gi|119719887|ref|YP_920382.1| - 0.029 13.4 3.4 0.042 12.9 2.3 1.3 1 0 0 1 1 1 0 Tropomyosin IncA PF04156.9 gi|119719887|ref|YP_920382.1| - 0.046 13.3 3.4 0.062 12.8 2.4 1.3 1 1 0 1 1 1 0 IncA protein GAS PF13851.1 gi|119719887|ref|YP_920382.1| - 0.047 12.8 0.4 0.06 12.5 0.3 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Med9 PF07544.8 gi|119719887|ref|YP_920382.1| - 0.062 13.0 2.5 0.13 11.9 1.7 1.6 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 priB_priC PF07445.7 gi|119719887|ref|YP_920382.1| - 0.072 12.5 2.5 0.2 11.1 1.7 1.7 2 0 0 2 2 2 0 Primosomal replication protein priB and priC Ax_dynein_light PF10211.4 gi|119719887|ref|YP_920382.1| - 0.076 12.8 1.5 0.089 12.6 1.1 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain Spc24 PF08286.6 gi|119719887|ref|YP_920382.1| - 0.082 12.6 0.3 0.11 12.2 0.2 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DUF812 PF05667.6 gi|119719887|ref|YP_920382.1| - 0.083 11.3 0.6 0.079 11.4 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) ATP-synt_D PF01813.12 gi|119719887|ref|YP_920382.1| - 0.094 12.2 2.0 0.14 11.7 1.4 1.2 1 0 0 1 1 1 0 ATP synthase subunit D MAD PF05557.8 gi|119719887|ref|YP_920382.1| - 0.096 10.7 4.1 0.11 10.5 2.9 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein Tmemb_cc2 PF10267.4 gi|119719887|ref|YP_920382.1| - 0.1 11.1 2.1 0.13 10.8 1.4 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein FbpA PF05833.6 gi|119719887|ref|YP_920382.1| - 0.21 10.1 2.2 0.25 9.8 1.5 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Atg14 PF10186.4 gi|119719887|ref|YP_920382.1| - 0.21 10.5 1.3 0.26 10.2 0.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|119719887|ref|YP_920382.1| - 0.24 10.8 4.6 0.41 10.1 1.2 2.1 1 1 1 2 2 2 0 Septum formation initiator Med4 PF10018.4 gi|119719887|ref|YP_920382.1| - 0.28 10.5 1.7 0.33 10.3 0.9 1.4 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Spc7 PF08317.6 gi|119719887|ref|YP_920382.1| - 0.28 9.8 2.0 0.39 9.3 1.2 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein PspB PF06667.7 gi|119719887|ref|YP_920382.1| - 0.31 10.9 3.7 4 7.4 0.8 2.2 1 1 1 2 2 2 0 Phage shock protein B Val_tRNA-synt_C PF10458.4 gi|119719887|ref|YP_920382.1| - 0.65 10.1 6.2 0.22 11.6 2.1 1.9 2 1 0 2 2 1 0 Valyl tRNA synthetase tRNA binding arm TMF_DNA_bd PF12329.3 gi|119719887|ref|YP_920382.1| - 0.66 9.8 4.1 1.9 8.3 2.9 1.8 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF1843 PF08898.5 gi|119719887|ref|YP_920382.1| - 1.1 9.3 4.4 1.4 8.9 2.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) BMFP PF04380.8 gi|119719887|ref|YP_920382.1| - 1.4 9.1 5.5 1 9.5 2.3 1.9 2 1 0 2 2 2 0 Membrane fusogenic activity CCDC-167 PF15188.1 gi|119719887|ref|YP_920382.1| - 1.5 8.7 5.0 3.5 7.6 3.5 1.6 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 bZIP_2 PF07716.10 gi|119719887|ref|YP_920382.1| - 1.6 8.6 6.7 0.31 10.8 1.3 2.0 2 0 0 2 2 2 0 Basic region leucine zipper DUF4140 PF13600.1 gi|119719887|ref|YP_920382.1| - 2 8.8 6.1 1 9.8 1.6 2.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) HAUS5 PF14817.1 gi|119719887|ref|YP_920382.1| - 4.5 5.7 5.5 5.1 5.5 3.8 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 DUF1192 PF06698.6 gi|119719887|ref|YP_920382.1| - 4.8 7.0 11.3 0.13 12.0 2.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DUF1814 PF08843.6 gi|119719888|ref|YP_920383.1| - 5.4e-06 26.3 0.3 6.1e-06 26.1 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) DUF2204 PF09970.4 gi|119719888|ref|YP_920383.1| - 3.8e-05 23.2 2.9 0.00089 18.7 2.0 2.9 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) CoA_binding_2 PF13380.1 gi|119719888|ref|YP_920383.1| - 0.013 15.6 0.3 0.086 13.0 0.1 2.2 1 1 1 2 2 2 0 CoA binding domain NTP_transf_5 PF14907.1 gi|119719888|ref|YP_920383.1| - 0.034 13.4 0.3 0.17 11.2 0.2 2.0 1 1 0 1 1 1 0 Uncharacterised nucleotidyltransferase DUF1156 PF06634.7 gi|119719890|ref|YP_920385.1| - 9.7e-20 70.0 0.0 2.4e-19 68.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|119719890|ref|YP_920385.1| - 6.8e-10 39.0 0.0 0.00019 21.4 0.0 2.5 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|119719890|ref|YP_920385.1| - 7.4e-08 32.1 0.0 0.0021 17.6 0.0 3.0 2 1 1 3 3 3 2 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|119719890|ref|YP_920385.1| - 1e-05 24.9 0.0 0.063 12.6 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 MethyltransfD12 PF02086.10 gi|119719890|ref|YP_920385.1| - 0.015 14.7 0.1 0.085 12.2 0.0 2.1 3 0 0 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase Met_10 PF02475.11 gi|119719890|ref|YP_920385.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein SNF2_N PF00176.18 gi|119719893|ref|YP_920388.1| - 1.7e-20 73.0 0.1 1.1e-19 70.3 0.1 2.2 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|119719893|ref|YP_920388.1| - 2.2e-12 46.6 0.1 5.1e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|119719893|ref|YP_920388.1| - 9.5e-08 32.0 0.0 9.4e-06 25.5 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|119719893|ref|YP_920388.1| - 5.4e-05 22.7 0.0 0.00048 19.6 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Flavi_DEAD PF07652.9 gi|119719893|ref|YP_920388.1| - 0.058 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Flavivirus DEAD domain Peptidase_M48 PF01435.13 gi|119719894|ref|YP_920389.1| - 2.4e-05 24.0 0.4 6.1e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M48 CbiA PF01656.18 gi|119719895|ref|YP_920390.1| - 8.6e-18 64.4 0.0 2.7e-17 62.8 0.0 1.9 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|119719895|ref|YP_920390.1| - 1.6e-08 34.6 0.0 7.7e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|119719895|ref|YP_920390.1| - 8.6e-05 21.8 0.1 0.00036 19.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|119719895|ref|YP_920390.1| - 0.00015 20.9 0.3 0.00015 20.9 0.2 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|119719895|ref|YP_920390.1| - 0.00031 19.8 0.1 0.026 13.5 0.1 2.3 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.1 gi|119719895|ref|YP_920390.1| - 0.008 15.6 0.2 0.016 14.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|119719895|ref|YP_920390.1| - 0.0091 15.1 0.2 0.017 14.2 0.2 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_19 PF13245.1 gi|119719895|ref|YP_920390.1| - 0.057 13.1 0.4 0.13 12.0 0.3 1.6 1 0 0 1 1 1 0 Part of AAA domain YhjQ PF06564.7 gi|119719895|ref|YP_920390.1| - 0.13 11.6 0.0 0.45 9.8 0.1 1.8 2 0 0 2 2 2 0 YhjQ protein DUF1626 PF07788.6 gi|119719897|ref|YP_920392.1| - 5.2e-26 90.2 0.0 9.3e-26 89.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF972 PF06156.8 gi|119719897|ref|YP_920392.1| - 3.2e-07 30.6 16.6 0.0077 16.5 0.6 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF972) CCDC155 PF14662.1 gi|119719897|ref|YP_920392.1| - 2.2e-05 24.1 25.8 0.00012 21.7 11.5 2.3 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 SmpB PF01668.13 gi|119719897|ref|YP_920392.1| - 4.3e-05 23.2 18.0 9.7 6.0 0.0 9.2 4 2 6 10 10 10 0 SmpB protein CENP-F_leu_zip PF10473.4 gi|119719897|ref|YP_920392.1| - 4.3e-05 23.3 29.7 0.002 17.9 9.3 2.3 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6 PF04111.7 gi|119719897|ref|YP_920392.1| - 4.6e-05 22.6 29.0 0.0018 17.4 8.6 2.2 1 1 1 2 2 2 2 Autophagy protein Apg6 DUF2205 PF10224.4 gi|119719897|ref|YP_920392.1| - 6.6e-05 22.3 21.5 0.0048 16.4 2.0 4.1 1 1 1 3 3 3 2 Predicted coiled-coil protein (DUF2205) TMF_DNA_bd PF12329.3 gi|119719897|ref|YP_920392.1| - 0.00015 21.4 28.4 0.026 14.3 2.4 3.9 1 1 3 4 4 4 2 TATA element modulatory factor 1 DNA binding DUF2353 PF09789.4 gi|119719897|ref|YP_920392.1| - 0.00022 20.5 14.0 0.0066 15.7 4.0 2.2 1 1 1 2 2 2 2 Uncharacterized coiled-coil protein (DUF2353) Snapin_Pallidin PF14712.1 gi|119719897|ref|YP_920392.1| - 0.00029 21.0 12.5 0.86 9.9 0.3 5.0 1 1 5 6 6 6 2 Snapin/Pallidin AAA_13 PF13166.1 gi|119719897|ref|YP_920392.1| - 0.0042 15.6 4.3 0.0057 15.1 3.0 1.1 1 0 0 1 1 1 1 AAA domain Mod_r PF07200.8 gi|119719897|ref|YP_920392.1| - 0.0049 16.7 18.9 0.19 11.6 5.6 2.3 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein EzrA PF06160.7 gi|119719897|ref|YP_920392.1| - 0.0052 15.0 17.8 0.11 10.7 3.2 3.0 1 1 2 3 3 3 2 Septation ring formation regulator, EzrA Transposase_22 PF02994.9 gi|119719897|ref|YP_920392.1| - 0.0053 15.3 19.1 0.035 12.6 5.1 2.1 1 1 1 2 2 2 2 L1 transposable element DUF342 PF03961.8 gi|119719897|ref|YP_920392.1| - 0.0061 15.0 12.1 0.076 11.4 2.3 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF342) ORF6C PF10552.4 gi|119719897|ref|YP_920392.1| - 0.015 14.9 9.3 5 6.8 0.0 4.2 1 1 3 4 4 4 0 ORF6C domain COG5 PF10392.4 gi|119719897|ref|YP_920392.1| - 0.018 15.0 0.5 0.43 10.5 0.1 2.4 1 1 1 2 2 2 0 Golgi transport complex subunit 5 MAD PF05557.8 gi|119719897|ref|YP_920392.1| - 0.021 12.9 20.4 0.029 12.4 14.1 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein Seryl_tRNA_N PF02403.17 gi|119719897|ref|YP_920392.1| - 0.022 14.7 20.6 0.2 11.6 6.0 2.7 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.7 gi|119719897|ref|YP_920392.1| - 0.022 14.5 7.0 0.33 10.7 0.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Tektin PF03148.9 gi|119719897|ref|YP_920392.1| - 0.022 13.2 17.4 0.032 12.7 0.7 3.9 1 1 4 5 5 5 0 Tektin family Latarcin PF10279.4 gi|119719897|ref|YP_920392.1| - 0.024 14.7 25.9 4.5 7.5 6.0 4.4 1 1 3 4 4 4 0 Latarcin precursor DUF2935 PF11155.3 gi|119719897|ref|YP_920392.1| - 0.029 14.4 1.4 2.3 8.3 1.0 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) LOH1CR12 PF10158.4 gi|119719897|ref|YP_920392.1| - 0.041 13.6 0.1 3.3 7.5 0.0 2.5 1 1 1 2 2 2 0 Tumour suppressor protein DivIC PF04977.10 gi|119719897|ref|YP_920392.1| - 0.061 12.8 29.0 0.87 9.1 3.0 4.8 1 1 5 6 6 6 0 Septum formation initiator Laminin_I PF06008.9 gi|119719897|ref|YP_920392.1| - 0.064 12.5 12.6 0.14 11.4 7.7 2.1 1 1 1 2 2 2 0 Laminin Domain I zf-C4H2 PF10146.4 gi|119719897|ref|YP_920392.1| - 0.071 13.1 13.9 0.54 10.2 3.0 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein TelA PF05816.6 gi|119719897|ref|YP_920392.1| - 0.075 11.7 9.3 1 8.0 1.4 3.3 1 1 2 3 3 3 0 Toxic anion resistance protein (TelA) ATP-synt_10 PF05176.9 gi|119719897|ref|YP_920392.1| - 0.083 12.1 7.5 0.39 9.9 0.1 2.9 2 1 1 3 3 3 0 ATP10 protein ERM PF00769.14 gi|119719897|ref|YP_920392.1| - 0.088 12.3 30.3 0.33 10.4 9.7 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF948 PF06103.6 gi|119719897|ref|YP_920392.1| - 0.094 12.5 0.3 9.3 6.1 0.0 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) V_ATPase_I PF01496.14 gi|119719897|ref|YP_920392.1| - 0.15 9.8 16.4 18 3.0 11.3 2.2 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family PTRF_SDPR PF15237.1 gi|119719897|ref|YP_920392.1| - 0.17 11.2 11.7 0.12 11.7 2.9 2.5 1 1 1 2 2 2 0 PTRF/SDPR family Dor1 PF04124.7 gi|119719897|ref|YP_920392.1| - 0.17 10.3 4.5 0.51 8.7 1.9 2.2 1 1 1 2 2 2 0 Dor1-like family DUF2968 PF11180.3 gi|119719897|ref|YP_920392.1| - 0.21 10.9 16.3 0.54 9.6 4.4 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) IncA PF04156.9 gi|119719897|ref|YP_920392.1| - 0.22 11.0 29.8 0.18 11.3 7.5 2.2 1 1 1 2 2 2 0 IncA protein HALZ PF02183.13 gi|119719897|ref|YP_920392.1| - 0.27 10.9 21.5 0.91 9.2 0.5 5.4 1 1 5 6 6 6 0 Homeobox associated leucine zipper CALCOCO1 PF07888.6 gi|119719897|ref|YP_920392.1| - 0.29 9.3 18.6 1.6 6.8 4.7 2.0 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Bacillus_HBL PF05791.6 gi|119719897|ref|YP_920392.1| - 0.34 10.2 4.1 5.1 6.4 0.4 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF904 PF06005.7 gi|119719897|ref|YP_920392.1| - 0.35 11.1 40.8 9.3 6.6 5.7 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF904) TBPIP PF07106.8 gi|119719897|ref|YP_920392.1| - 0.61 9.6 18.9 1.2 8.6 4.9 2.6 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prominin PF05478.6 gi|119719897|ref|YP_920392.1| - 0.76 7.2 5.4 1.7 6.0 0.3 2.4 1 1 1 2 2 2 0 Prominin GAS PF13851.1 gi|119719897|ref|YP_920392.1| - 0.79 8.8 23.8 0.96 8.6 6.9 2.5 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Cauli_AT PF03233.8 gi|119719897|ref|YP_920392.1| - 0.83 9.3 4.9 99 2.5 3.4 2.5 1 1 0 1 1 1 0 Aphid transmission protein Toxin_52 PF15605.1 gi|119719897|ref|YP_920392.1| - 0.84 9.5 6.4 19 5.2 0.5 3.7 1 1 2 3 3 3 0 Putative toxin 52 DUF4201 PF13870.1 gi|119719897|ref|YP_920392.1| - 0.9 8.9 19.2 9.2 5.6 4.4 3.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4201) DUF4407 PF14362.1 gi|119719897|ref|YP_920392.1| - 2.6 6.9 11.9 12 4.7 8.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1319 PF07028.6 gi|119719897|ref|YP_920392.1| - 2.6 8.2 14.4 11 6.2 2.9 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) DUF4446 PF14584.1 gi|119719897|ref|YP_920392.1| - 2.7 7.8 9.3 14 5.5 0.7 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF4446) FUSC PF04632.7 gi|119719897|ref|YP_920392.1| - 3 6.1 8.5 8.6 4.6 5.8 1.7 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF4546 PF15079.1 gi|119719897|ref|YP_920392.1| - 3.1 6.8 12.4 2.2 7.3 3.8 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4546) ADIP PF11559.3 gi|119719897|ref|YP_920392.1| - 3.5 7.5 19.4 7.5 6.4 4.7 2.4 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding CASP_C PF08172.7 gi|119719897|ref|YP_920392.1| - 3.6 6.5 11.0 5 6.0 1.5 2.7 1 1 1 2 2 2 0 CASP C terminal UCR_UQCRX_QCR9 PF05365.7 gi|119719897|ref|YP_920392.1| - 5 6.8 17.8 17 5.1 0.2 6.9 4 4 3 7 7 7 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like COG2 PF06148.6 gi|119719897|ref|YP_920392.1| - 5.7 6.8 12.0 48 3.8 0.4 3.7 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Nup88 PF10168.4 gi|119719897|ref|YP_920392.1| - 7 4.3 20.3 0.58 7.9 4.9 2.5 1 1 1 2 2 2 0 Nuclear pore component YbjQ_1 PF01906.12 gi|119719898|ref|YP_920393.1| - 2.4e-33 114.7 3.6 2.6e-33 114.5 2.5 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|119719898|ref|YP_920393.1| - 0.012 15.4 0.2 0.029 14.2 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4156) NTP_transf_2 PF01909.18 gi|119719899|ref|YP_920394.1| - 1.8e-11 44.1 0.1 2.2e-11 43.8 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|119719899|ref|YP_920394.1| - 0.00097 19.1 0.0 0.0011 19.0 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm MdcG PF10620.4 gi|119719899|ref|YP_920394.1| - 0.047 13.2 0.1 0.073 12.6 0.1 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Adenyl_cycl_N PF12633.2 gi|119719899|ref|YP_920394.1| - 0.094 12.2 0.0 0.096 12.2 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain CPSase_L_chain PF00289.17 gi|119719899|ref|YP_920394.1| - 0.1 12.6 0.1 0.13 12.3 0.1 1.1 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Glyco_trans_1_4 PF13692.1 gi|119719899|ref|YP_920394.1| - 0.12 12.4 0.1 0.15 12.2 0.1 1.3 1 1 0 1 1 1 0 Glycosyl transferases group 1 HEPN PF05168.9 gi|119719900|ref|YP_920395.1| - 2e-19 69.6 0.9 2.6e-19 69.2 0.6 1.1 1 0 0 1 1 1 1 HEPN domain FlaC_arch PF05377.6 gi|119719900|ref|YP_920395.1| - 0.12 12.3 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) PLAC9 PF15205.1 gi|119719900|ref|YP_920395.1| - 0.18 12.0 1.2 0.31 11.3 0.1 1.9 2 0 0 2 2 2 0 Placenta-specific protein 9 Nitro_FeMo-Co PF02579.12 gi|119719903|ref|YP_920398.1| - 2.4e-14 53.1 0.0 2.9e-14 52.9 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.18 gi|119719904|ref|YP_920399.1| - 1.5e-27 96.2 0.0 1.9e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|119719904|ref|YP_920399.1| - 4.7e-14 51.3 12.2 5.7e-07 28.8 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119719904|ref|YP_920399.1| - 5.7e-09 35.6 5.9 9.9e-09 34.8 4.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119719904|ref|YP_920399.1| - 1e-08 35.4 9.0 2.1e-08 34.4 6.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719904|ref|YP_920399.1| - 5.2e-08 32.4 11.9 0.0005 19.8 3.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|119719904|ref|YP_920399.1| - 3.3e-06 27.7 3.9 0.033 14.9 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|119719904|ref|YP_920399.1| - 1.6e-05 24.6 2.5 1.6e-05 24.6 1.7 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119719904|ref|YP_920399.1| - 2.2e-05 24.6 7.4 4.2e-05 23.7 5.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719904|ref|YP_920399.1| - 0.00053 19.7 11.0 0.019 14.8 1.2 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain AAA_31 PF13614.1 gi|119719904|ref|YP_920399.1| - 0.0024 17.8 0.0 0.0054 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Fer4_15 PF13459.1 gi|119719904|ref|YP_920399.1| - 0.0026 18.2 6.1 0.068 13.7 0.1 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|119719904|ref|YP_920399.1| - 0.0054 16.7 6.8 0.039 13.9 5.1 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|119719904|ref|YP_920399.1| - 0.0056 15.7 0.4 0.0093 15.0 0.3 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_18 PF13746.1 gi|119719904|ref|YP_920399.1| - 0.0056 17.0 1.4 0.42 11.0 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain GTP_EFTU PF00009.22 gi|119719904|ref|YP_920399.1| - 0.019 14.4 0.0 0.035 13.5 0.0 1.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Fer4_17 PF13534.1 gi|119719904|ref|YP_920399.1| - 0.031 14.6 5.9 3 8.2 1.2 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|119719904|ref|YP_920399.1| - 0.046 13.4 7.5 1.8 8.3 0.0 3.8 4 0 0 4 4 4 0 Part of AAA domain Fer4_11 PF13247.1 gi|119719904|ref|YP_920399.1| - 0.057 13.3 2.2 0.09 12.6 1.1 1.6 2 0 0 2 2 1 0 4Fe-4S dicluster domain PhoH PF02562.11 gi|119719904|ref|YP_920399.1| - 0.064 12.4 0.1 0.097 11.8 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein MipZ PF09140.6 gi|119719904|ref|YP_920399.1| - 0.11 11.6 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 ATPase MipZ AAA_30 PF13604.1 gi|119719904|ref|YP_920399.1| - 0.11 12.0 0.6 2.6 7.5 0.1 2.6 2 1 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|119719904|ref|YP_920399.1| - 0.11 11.4 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase DUF2791 PF10923.3 gi|119719904|ref|YP_920399.1| - 0.13 10.7 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) Fer4_13 PF13370.1 gi|119719904|ref|YP_920399.1| - 4.5 7.7 8.3 13 6.2 0.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiA PF01656.18 gi|119719905|ref|YP_920400.1| - 1e-27 96.8 0.0 1.4e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|119719905|ref|YP_920400.1| - 8.3e-10 38.8 0.0 6.3e-07 29.4 0.0 2.6 2 1 0 2 2 2 1 AAA domain Fer4 PF00037.22 gi|119719905|ref|YP_920400.1| - 1.6e-09 36.9 14.9 7e-08 31.7 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|119719905|ref|YP_920400.1| - 9.8e-09 34.7 11.5 3.5e-06 26.6 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|119719905|ref|YP_920400.1| - 5.2e-08 32.3 12.1 1.4e-05 24.7 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain ArsA_ATPase PF02374.10 gi|119719905|ref|YP_920400.1| - 1e-07 31.3 0.9 7.3e-06 25.2 0.6 2.7 2 1 1 3 3 3 1 Anion-transporting ATPase Fer4_9 PF13187.1 gi|119719905|ref|YP_920400.1| - 2.2e-07 31.0 6.7 9e-05 22.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119719905|ref|YP_920400.1| - 3.9e-07 29.9 1.1 0.00094 19.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119719905|ref|YP_920400.1| - 6e-07 30.1 5.6 0.015 16.0 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|119719905|ref|YP_920400.1| - 6.3e-07 29.6 24.1 2.7e-05 24.4 8.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719905|ref|YP_920400.1| - 1.6e-06 27.7 10.2 0.00015 21.4 8.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain YhjQ PF06564.7 gi|119719905|ref|YP_920400.1| - 2.7e-06 26.9 0.1 0.012 15.0 0.1 2.1 2 0 0 2 2 2 2 YhjQ protein Fer4_21 PF14697.1 gi|119719905|ref|YP_920400.1| - 2.2e-05 24.1 6.7 4e-05 23.3 4.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119719905|ref|YP_920400.1| - 0.00026 21.2 8.1 0.01 16.1 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain ParA PF10609.4 gi|119719905|ref|YP_920400.1| - 0.00032 20.5 0.0 0.00063 19.5 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like Fer4_4 PF12800.2 gi|119719905|ref|YP_920400.1| - 0.0017 18.5 13.7 0.0052 17.0 2.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain MipZ PF09140.6 gi|119719905|ref|YP_920400.1| - 0.0022 17.1 0.0 0.013 14.5 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ Fer4_18 PF13746.1 gi|119719905|ref|YP_920400.1| - 0.0091 16.3 6.1 0.21 12.0 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain GTP_EFTU PF00009.22 gi|119719905|ref|YP_920400.1| - 0.012 15.1 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|119719905|ref|YP_920400.1| - 0.012 15.2 0.1 0.03 14.0 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|119719905|ref|YP_920400.1| - 0.017 14.5 0.1 0.024 14.0 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Fer4_15 PF13459.1 gi|119719905|ref|YP_920400.1| - 0.017 15.6 8.7 0.28 11.7 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|119719905|ref|YP_920400.1| - 0.017 15.6 21.7 0.44 11.2 5.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Mg_chelatase PF01078.16 gi|119719905|ref|YP_920400.1| - 0.068 12.3 0.0 1.6 7.8 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|119719905|ref|YP_920400.1| - 0.078 11.9 0.1 0.11 11.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF853 PF05872.7 gi|119719905|ref|YP_920400.1| - 0.081 11.2 0.6 0.15 10.3 0.4 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_25 PF13481.1 gi|119719905|ref|YP_920400.1| - 0.083 12.2 1.5 0.66 9.3 0.2 2.4 2 1 0 2 2 2 0 AAA domain CTP_synth_N PF06418.9 gi|119719905|ref|YP_920400.1| - 0.13 11.3 0.4 0.19 10.8 0.2 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus AAA_30 PF13604.1 gi|119719905|ref|YP_920400.1| - 0.2 11.2 1.5 1.5 8.3 0.6 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|119719905|ref|YP_920400.1| - 0.54 10.0 12.0 0.048 13.4 1.4 3.2 3 1 0 3 3 3 0 Part of AAA domain Fer4_13 PF13370.1 gi|119719905|ref|YP_920400.1| - 4.7 7.6 15.9 0.75 10.2 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain NTP_transf_2 PF01909.18 gi|119719906|ref|YP_920401.1| - 4.9e-09 36.4 0.3 6.2e-09 36.0 0.2 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|119719906|ref|YP_920401.1| - 3e-05 23.6 0.0 4.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|119719907|ref|YP_920402.1| - 4.4e-10 39.4 0.1 5.2e-10 39.2 0.1 1.1 1 0 0 1 1 1 1 HEPN domain TPR_16 PF13432.1 gi|119719907|ref|YP_920402.1| - 2.8 8.7 5.8 11 6.8 0.1 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat IncA PF04156.9 gi|119719908|ref|YP_920403.1| - 1.2e-08 34.7 31.1 3e-06 26.9 9.2 2.5 2 1 2 4 4 3 2 IncA protein CALCOCO1 PF07888.6 gi|119719908|ref|YP_920403.1| - 1e-07 30.6 1.9 1.4e-07 30.2 1.3 1.2 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like CCDC155 PF14662.1 gi|119719908|ref|YP_920403.1| - 3.3e-07 30.0 9.9 4.9e-07 29.5 6.9 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 DUF2353 PF09789.4 gi|119719908|ref|YP_920403.1| - 2.4e-06 27.0 2.4 3.9e-06 26.3 1.6 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) Shugoshin_N PF07558.6 gi|119719908|ref|YP_920403.1| - 3.5e-06 26.6 6.4 0.00022 20.8 0.5 3.0 3 0 0 3 3 2 1 Shugoshin N-terminal coiled-coil region ATG16 PF08614.6 gi|119719908|ref|YP_920403.1| - 5e-06 26.4 9.8 1.3e-05 25.0 6.8 1.7 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) HALZ PF02183.13 gi|119719908|ref|YP_920403.1| - 6.5e-06 25.7 19.2 0.0005 19.7 2.1 4.2 2 1 4 6 6 6 3 Homeobox associated leucine zipper DUF869 PF05911.6 gi|119719908|ref|YP_920403.1| - 2.5e-05 22.7 0.7 2.9e-05 22.5 0.5 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) bZIP_1 PF00170.16 gi|119719908|ref|YP_920403.1| - 3.3e-05 23.7 12.7 0.00095 19.0 2.4 3.6 1 1 3 5 5 5 2 bZIP transcription factor CENP-F_leu_zip PF10473.4 gi|119719908|ref|YP_920403.1| - 7.3e-05 22.6 12.0 0.00044 20.1 3.7 2.3 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mod_r PF07200.8 gi|119719908|ref|YP_920403.1| - 8e-05 22.6 9.1 0.01 15.7 3.2 2.2 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein V_ATPase_I PF01496.14 gi|119719908|ref|YP_920403.1| - 0.00018 19.5 1.0 0.00023 19.2 0.7 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Myosin_tail_1 PF01576.14 gi|119719908|ref|YP_920403.1| - 0.00019 19.3 6.7 0.00027 18.8 4.6 1.2 1 0 0 1 1 1 1 Myosin tail bZIP_2 PF07716.10 gi|119719908|ref|YP_920403.1| - 0.00022 20.9 7.1 0.0011 18.7 1.6 3.4 3 1 1 4 4 4 2 Basic region leucine zipper Seryl_tRNA_N PF02403.17 gi|119719908|ref|YP_920403.1| - 0.00025 21.0 7.2 0.017 15.1 1.5 2.4 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain DUF972 PF06156.8 gi|119719908|ref|YP_920403.1| - 0.00025 21.3 4.2 0.016 15.5 0.2 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF972) APG6 PF04111.7 gi|119719908|ref|YP_920403.1| - 0.00026 20.1 6.4 0.0003 19.9 3.6 1.5 1 1 0 1 1 1 1 Autophagy protein Apg6 Baculo_PEP_C PF04513.7 gi|119719908|ref|YP_920403.1| - 0.00027 20.7 0.6 0.00082 19.2 0.4 1.8 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|119719908|ref|YP_920403.1| - 0.00035 19.8 4.4 0.00054 19.2 3.1 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein GAS PF13851.1 gi|119719908|ref|YP_920403.1| - 0.00056 19.1 8.1 0.00058 19.1 2.1 2.1 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding ADIP PF11559.3 gi|119719908|ref|YP_920403.1| - 0.00072 19.4 9.2 0.011 15.6 1.9 2.2 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding BLOC1_2 PF10046.4 gi|119719908|ref|YP_920403.1| - 0.00075 19.5 3.1 1.2 9.2 0.2 3.1 1 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin_1 PF12718.2 gi|119719908|ref|YP_920403.1| - 0.00079 19.2 9.6 0.03 14.1 1.8 2.1 1 1 1 2 2 2 2 Tropomyosin like Lebercilin PF15619.1 gi|119719908|ref|YP_920403.1| - 0.0008 18.8 5.7 0.0014 18.1 3.9 1.3 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease TPR_MLP1_2 PF07926.7 gi|119719908|ref|YP_920403.1| - 0.0018 17.9 10.7 0.0061 16.2 2.3 2.2 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein ERM PF00769.14 gi|119719908|ref|YP_920403.1| - 0.0031 17.1 9.0 0.0044 16.6 6.3 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family TMF_TATA_bd PF12325.3 gi|119719908|ref|YP_920403.1| - 0.0031 17.2 9.6 0.011 15.4 4.6 2.4 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding DUF904 PF06005.7 gi|119719908|ref|YP_920403.1| - 0.0039 17.4 3.8 0.0039 17.4 2.6 2.8 1 1 2 3 3 3 1 Protein of unknown function (DUF904) DUF4201 PF13870.1 gi|119719908|ref|YP_920403.1| - 0.0043 16.5 3.1 0.0082 15.6 1.6 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) MAD PF05557.8 gi|119719908|ref|YP_920403.1| - 0.0044 15.2 5.6 0.0071 14.5 3.7 1.5 1 1 0 1 1 1 1 Mitotic checkpoint protein DUF2421 PF10334.4 gi|119719908|ref|YP_920403.1| - 0.0045 16.6 0.3 0.0087 15.6 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2421) NEMO PF11577.3 gi|119719908|ref|YP_920403.1| - 0.0053 16.4 0.6 0.012 15.3 0.4 1.7 1 0 0 1 1 1 1 NF-kappa-B essential modulator NEMO DUF3584 PF12128.3 gi|119719908|ref|YP_920403.1| - 0.0065 13.8 3.3 0.0092 13.3 2.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Macoilin PF09726.4 gi|119719908|ref|YP_920403.1| - 0.0074 14.6 6.9 0.063 11.5 1.0 1.9 1 1 1 2 2 2 2 Transmembrane protein KLRAQ PF10205.4 gi|119719908|ref|YP_920403.1| - 0.0095 15.9 8.4 0.031 14.3 4.6 2.2 1 1 1 2 2 2 1 Predicted coiled-coil domain-containing protein DivIC PF04977.10 gi|119719908|ref|YP_920403.1| - 0.012 15.1 8.9 0.03 13.7 0.4 3.4 2 1 1 3 3 3 0 Septum formation initiator Filament PF00038.16 gi|119719908|ref|YP_920403.1| - 0.013 15.0 8.4 0.16 11.3 1.4 2.1 1 1 1 2 2 2 0 Intermediate filament protein Atg14 PF10186.4 gi|119719908|ref|YP_920403.1| - 0.013 14.4 9.5 0.096 11.6 6.5 2.0 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Jnk-SapK_ap_N PF09744.4 gi|119719908|ref|YP_920403.1| - 0.014 15.3 2.6 0.66 9.9 0.0 2.2 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 AAA_13 PF13166.1 gi|119719908|ref|YP_920403.1| - 0.018 13.5 0.6 0.025 13.0 0.4 1.1 1 0 0 1 1 1 0 AAA domain Rootletin PF15035.1 gi|119719908|ref|YP_920403.1| - 0.019 14.9 7.7 0.029 14.3 5.3 1.2 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion TBPIP PF07106.8 gi|119719908|ref|YP_920403.1| - 0.021 14.3 5.2 0.034 13.7 1.6 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FbpA PF05833.6 gi|119719908|ref|YP_920403.1| - 0.026 13.1 0.9 0.036 12.6 0.6 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) CCDC144C PF14915.1 gi|119719908|ref|YP_920403.1| - 0.035 13.0 6.7 0.25 10.2 0.3 2.1 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region Leu_zip PF15294.1 gi|119719908|ref|YP_920403.1| - 0.05 12.7 5.7 0.099 11.7 3.9 1.4 1 1 0 1 1 1 0 Leucine zipper MRFAP1 PF15155.1 gi|119719908|ref|YP_920403.1| - 0.052 13.8 2.4 0.14 12.4 0.2 2.2 2 0 0 2 2 2 0 MORF4 family-associated protein1 TSC22 PF01166.13 gi|119719908|ref|YP_920403.1| - 0.063 13.2 4.8 0.29 11.1 1.0 2.5 1 1 1 2 2 2 0 TSC-22/dip/bun family DUF2730 PF10805.3 gi|119719908|ref|YP_920403.1| - 0.063 13.0 1.3 3.2 7.5 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) DUF3166 PF11365.3 gi|119719908|ref|YP_920403.1| - 0.085 13.3 5.2 0.42 11.0 0.7 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3166) EzrA PF06160.7 gi|119719908|ref|YP_920403.1| - 0.085 11.0 3.8 0.98 7.5 1.2 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Spc7 PF08317.6 gi|119719908|ref|YP_920403.1| - 0.089 11.4 5.7 0.36 9.4 3.9 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|119719908|ref|YP_920403.1| - 0.09 12.5 0.2 1.5 8.6 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.6 gi|119719908|ref|YP_920403.1| - 0.098 12.5 1.5 0.44 10.4 0.1 2.5 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF724 PF05266.9 gi|119719908|ref|YP_920403.1| - 0.11 12.1 3.9 0.26 10.8 2.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Fez1 PF06818.10 gi|119719908|ref|YP_920403.1| - 0.12 12.4 11.1 0.17 11.8 6.3 1.8 1 1 1 2 2 2 0 Fez1 CENP-Q PF13094.1 gi|119719908|ref|YP_920403.1| - 0.13 12.3 8.1 0.21 11.6 5.6 1.3 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Troponin PF00992.15 gi|119719908|ref|YP_920403.1| - 0.14 12.2 2.9 0.23 11.5 1.9 1.5 1 1 0 1 1 1 0 Troponin HAP1_N PF04849.8 gi|119719908|ref|YP_920403.1| - 0.14 11.0 10.7 0.34 9.7 3.0 3.0 1 1 1 3 3 3 0 HAP1 N-terminal conserved region EMP24_GP25L PF01105.19 gi|119719908|ref|YP_920403.1| - 0.14 11.8 1.6 1.7 8.3 1.1 2.3 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD RTBV_P46 PF06216.6 gi|119719908|ref|YP_920403.1| - 0.17 10.7 0.5 0.99 8.1 0.3 2.0 1 1 0 1 1 1 0 Rice tungro bacilliform virus P46 protein Flu_M1_C PF08289.6 gi|119719908|ref|YP_920403.1| - 0.17 11.9 1.4 0.43 10.6 0.2 2.1 1 1 1 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain Lectin_N PF03954.9 gi|119719908|ref|YP_920403.1| - 0.17 11.2 9.0 0.38 10.1 0.8 2.8 2 1 1 3 3 2 0 Hepatic lectin, N-terminal domain Bacillus_HBL PF05791.6 gi|119719908|ref|YP_920403.1| - 0.17 11.2 0.7 18 4.6 0.0 2.4 1 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF342 PF03961.8 gi|119719908|ref|YP_920403.1| - 0.17 10.2 1.5 0.28 9.5 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Striatin PF08232.7 gi|119719908|ref|YP_920403.1| - 0.18 12.1 6.7 1.5 9.1 1.8 2.3 1 1 1 2 2 2 0 Striatin family CorA PF01544.13 gi|119719908|ref|YP_920403.1| - 0.2 10.6 0.5 0.37 9.7 0.4 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2205 PF10224.4 gi|119719908|ref|YP_920403.1| - 0.2 11.2 6.6 0.12 11.9 1.1 2.8 2 1 1 3 3 3 0 Predicted coiled-coil protein (DUF2205) DUF4515 PF14988.1 gi|119719908|ref|YP_920403.1| - 0.25 10.9 4.8 0.27 10.8 2.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) PspB PF06667.7 gi|119719908|ref|YP_920403.1| - 0.25 11.2 2.0 0.89 9.5 0.1 2.6 2 1 1 3 3 2 0 Phage shock protein B Mto2_bdg PF12808.2 gi|119719908|ref|YP_920403.1| - 0.26 11.4 3.8 1.2 9.2 2.6 2.3 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region Spc24 PF08286.6 gi|119719908|ref|YP_920403.1| - 0.26 10.9 4.1 3.4 7.3 0.6 2.5 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Tnp_P_element PF12017.3 gi|119719908|ref|YP_920403.1| - 0.26 10.4 1.1 0.58 9.3 0.2 1.9 1 1 1 2 2 2 0 Transposase protein Nup54 PF13874.1 gi|119719908|ref|YP_920403.1| - 0.32 10.6 3.9 0.77 9.4 2.3 1.8 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 FUSC PF04632.7 gi|119719908|ref|YP_920403.1| - 0.35 9.2 12.8 0.6 8.4 8.8 1.4 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4140 PF13600.1 gi|119719908|ref|YP_920403.1| - 0.4 11.1 16.5 0.3 11.5 2.0 3.8 2 1 2 4 4 3 0 N-terminal domain of unknown function (DUF4140) MbeD_MobD PF04899.7 gi|119719908|ref|YP_920403.1| - 0.41 10.5 8.2 0.78 9.6 0.2 3.4 2 1 0 3 3 3 0 MbeD/MobD like WD40_alt PF14077.1 gi|119719908|ref|YP_920403.1| - 0.41 10.3 0.1 0.41 10.3 0.1 2.2 3 0 0 3 3 1 0 Alternative WD40 repeat motif Cep57_CLD_2 PF14197.1 gi|119719908|ref|YP_920403.1| - 0.45 10.5 14.8 0.1 12.5 5.4 2.4 1 1 0 2 2 2 0 Centrosome localisation domain of PPC89 DivIVA PF05103.8 gi|119719908|ref|YP_920403.1| - 0.46 10.5 9.9 0.55 10.2 0.9 3.2 1 1 3 4 4 4 0 DivIVA protein DUF4472 PF14739.1 gi|119719908|ref|YP_920403.1| - 0.77 10.2 5.3 1.8 9.0 1.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) Bap31 PF05529.7 gi|119719908|ref|YP_920403.1| - 0.8 9.1 5.9 37 3.7 3.9 2.9 2 1 0 2 2 2 0 B-cell receptor-associated protein 31-like DUF2968 PF11180.3 gi|119719908|ref|YP_920403.1| - 0.87 8.9 12.1 0.027 13.8 1.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) NTR2 PF15458.1 gi|119719908|ref|YP_920403.1| - 0.96 8.6 7.6 7.7 5.6 5.3 2.1 1 1 0 1 1 1 0 Nineteen complex-related protein 2 TMF_DNA_bd PF12329.3 gi|119719908|ref|YP_920403.1| - 1 9.2 14.7 0.59 9.9 4.5 2.8 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding GldM_N PF12081.3 gi|119719908|ref|YP_920403.1| - 1.4 8.4 4.6 0.69 9.4 0.7 2.0 2 0 0 2 2 2 0 GldM N-terminal domain Rab5-bind PF09311.6 gi|119719908|ref|YP_920403.1| - 1.7 8.5 11.6 0.29 11.0 3.2 2.4 1 1 2 3 3 3 0 Rabaptin-like protein Rho_Binding PF08912.6 gi|119719908|ref|YP_920403.1| - 2 8.7 6.4 2.6 8.3 0.1 3.4 2 1 3 5 5 3 0 Rho Binding DUF3450 PF11932.3 gi|119719908|ref|YP_920403.1| - 3.5 6.8 13.9 0.16 11.2 0.3 3.0 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) Mnd1 PF03962.10 gi|119719908|ref|YP_920403.1| - 3.5 7.2 8.6 89 2.6 6.0 2.1 1 1 0 1 1 1 0 Mnd1 family DUF4164 PF13747.1 gi|119719908|ref|YP_920403.1| - 4 7.6 12.9 3.3 7.8 2.6 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) DUF4200 PF13863.1 gi|119719908|ref|YP_920403.1| - 4.2 7.3 8.1 7 6.6 2.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) LURAP PF14854.1 gi|119719908|ref|YP_920403.1| - 4.8 6.9 10.5 0.93 9.2 3.8 2.4 2 1 0 2 2 1 0 Leucine rich adaptor protein MCC-bdg_PDZ PF10506.4 gi|119719908|ref|YP_920403.1| - 5.7 6.8 14.9 0.55 10.1 1.1 3.2 2 1 1 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Val_tRNA-synt_C PF10458.4 gi|119719908|ref|YP_920403.1| - 6.2 6.9 8.8 0.99 9.5 0.5 3.2 2 1 2 4 4 3 0 Valyl tRNA synthetase tRNA binding arm BMFP PF04380.8 gi|119719908|ref|YP_920403.1| - 9 6.5 9.0 2.6 8.2 0.1 3.1 3 0 0 3 3 2 0 Membrane fusogenic activity Prefoldin_2 PF01920.15 gi|119719908|ref|YP_920403.1| - 10 5.9 10.1 19 5.0 0.4 3.0 1 1 1 2 2 2 0 Prefoldin subunit HhH-GPD PF00730.20 gi|119719909|ref|YP_920404.1| - 1.1e-19 70.6 0.0 1.9e-19 69.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|119719909|ref|YP_920404.1| - 3.9e-10 38.8 0.1 2e-08 33.4 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|119719909|ref|YP_920404.1| - 0.00097 19.2 6.9 0.0024 17.9 4.8 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|119719909|ref|YP_920404.1| - 0.0032 17.5 0.3 0.67 10.1 0.1 2.8 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|119719909|ref|YP_920404.1| - 0.017 14.9 0.0 1.1 9.2 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|119719909|ref|YP_920404.1| - 0.097 12.8 0.0 0.39 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain GGDEF PF00990.16 gi|119719909|ref|YP_920404.1| - 0.14 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 GGDEF domain Spore_III_AB PF09548.5 gi|119719909|ref|YP_920404.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) TPR_10 PF13374.1 gi|119719909|ref|YP_920404.1| - 3.1 7.8 5.1 18 5.4 0.1 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat CbiA PF01656.18 gi|119719911|ref|YP_920406.1| - 8.1e-13 48.2 0.0 1e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|119719911|ref|YP_920406.1| - 2.5e-10 40.4 0.0 2.7e-09 37.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|119719911|ref|YP_920406.1| - 0.001 18.2 0.0 0.0035 16.4 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|119719911|ref|YP_920406.1| - 0.097 12.4 0.1 0.34 10.6 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain SurE PF01975.12 gi|119719912|ref|YP_920407.1| - 8e-49 165.6 0.1 1e-48 165.2 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE NTPase_1 PF03266.10 gi|119719913|ref|YP_920408.1| - 9.2e-57 191.4 0.0 1.1e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.4 gi|119719913|ref|YP_920408.1| - 1.9e-06 27.2 0.1 2.9e-06 26.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_5 PF07728.9 gi|119719913|ref|YP_920408.1| - 0.00016 21.3 0.3 0.15 11.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|119719913|ref|YP_920408.1| - 0.0043 16.7 0.4 0.01 15.5 0.3 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|119719913|ref|YP_920408.1| - 0.0051 17.0 0.3 0.016 15.4 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|119719913|ref|YP_920408.1| - 0.0063 16.2 0.6 0.011 15.4 0.4 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|119719913|ref|YP_920408.1| - 0.0071 15.1 4.1 0.011 14.5 2.9 1.5 1 1 0 1 1 1 1 ArgK protein IstB_IS21 PF01695.12 gi|119719913|ref|YP_920408.1| - 0.0097 15.3 0.2 0.39 10.1 0.1 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein SRP54 PF00448.17 gi|119719913|ref|YP_920408.1| - 0.027 13.9 0.3 0.04 13.3 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|119719913|ref|YP_920408.1| - 0.03 14.4 0.5 0.19 11.8 0.3 2.3 1 1 1 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|119719913|ref|YP_920408.1| - 0.033 13.5 0.0 0.04 13.2 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase RuvB_N PF05496.7 gi|119719913|ref|YP_920408.1| - 0.038 13.0 0.1 1.5 7.7 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|119719913|ref|YP_920408.1| - 0.051 13.5 0.3 0.14 12.0 0.1 1.7 1 1 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|119719913|ref|YP_920408.1| - 0.083 12.3 0.2 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|119719913|ref|YP_920408.1| - 0.096 12.2 0.1 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|119719913|ref|YP_920408.1| - 0.11 12.0 0.6 0.85 9.1 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|119719913|ref|YP_920408.1| - 0.12 11.7 0.8 0.24 10.7 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|119719913|ref|YP_920408.1| - 0.14 12.4 0.5 0.33 11.2 0.3 1.6 2 0 0 2 2 2 0 AAA domain Fe-ADH PF00465.14 gi|119719914|ref|YP_920409.1| - 1.7e-101 339.4 0.0 2e-101 339.3 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|119719914|ref|YP_920409.1| - 5.1e-16 58.7 0.0 6.9e-13 48.4 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase 5-FTHF_cyc-lig PF01812.15 gi|119719915|ref|YP_920410.1| - 1.4e-28 99.8 0.0 1.8e-28 99.6 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family NTP_transf_2 PF01909.18 gi|119719916|ref|YP_920411.1| - 2e-05 24.8 0.0 3.8e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain HIT PF01230.18 gi|119719917|ref|YP_920412.1| - 3.1e-23 82.1 0.0 4e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|119719917|ref|YP_920412.1| - 1.8e-11 44.2 0.0 2.4e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|119719917|ref|YP_920412.1| - 9.2e-06 25.3 0.0 1.4e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 ATP-cone PF03477.11 gi|119719918|ref|YP_920413.1| - 4.3e-11 43.1 1.2 8.1e-11 42.2 0.3 1.8 2 0 0 2 2 2 1 ATP cone domain Radical_SAM PF04055.16 gi|119719919|ref|YP_920414.1| - 4e-12 46.6 0.0 1.1e-11 45.2 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|119719919|ref|YP_920414.1| - 4.4e-06 26.4 3.0 0.21 11.0 4.4 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) CHAT PF12770.2 gi|119719919|ref|YP_920414.1| - 0.029 13.4 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 CHAT domain Gp37_Gp68 PF07505.6 gi|119719919|ref|YP_920414.1| - 0.13 11.4 0.1 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Phage protein Gp37/Gp68 GFO_IDH_MocA PF01408.17 gi|119719921|ref|YP_920416.1| - 8.5e-34 116.6 0.7 1.4e-33 115.9 0.5 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|119719921|ref|YP_920416.1| - 1.3e-10 41.0 0.0 2.7e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|119719921|ref|YP_920416.1| - 9.3e-05 22.7 0.6 0.00015 22.1 0.4 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|119719921|ref|YP_920416.1| - 0.00025 21.0 0.4 0.00063 19.7 0.3 1.7 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|119719921|ref|YP_920416.1| - 0.0012 19.2 1.4 0.06 13.8 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|119719921|ref|YP_920416.1| - 0.0051 17.1 0.1 0.0098 16.1 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|119719921|ref|YP_920416.1| - 0.013 14.4 0.4 0.019 13.9 0.3 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|119719921|ref|YP_920416.1| - 0.062 12.4 0.0 0.17 11.0 0.0 1.8 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DEAD_assoc PF08494.6 gi|119719922|ref|YP_920417.1| - 1.5e-29 103.0 0.1 6.4e-29 101.0 0.0 2.1 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|119719922|ref|YP_920417.1| - 9.4e-28 96.8 0.0 7.4e-27 93.8 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|119719922|ref|YP_920417.1| - 1.3e-17 63.4 0.1 8.9e-16 57.5 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|119719922|ref|YP_920417.1| - 0.0037 17.1 0.0 0.02 14.7 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SelB-wing_3 PF09107.6 gi|119719922|ref|YP_920417.1| - 0.014 14.7 0.1 0.16 11.4 0.0 2.7 2 0 0 2 2 2 0 Elongation factor SelB, winged helix Oxidored_nitro PF00148.14 gi|119719922|ref|YP_920417.1| - 0.023 13.3 0.0 4.5 5.7 0.0 2.4 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Zn-ribbon_8 PF09723.5 gi|119719922|ref|YP_920417.1| - 0.03 14.2 0.1 0.068 13.1 0.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|119719922|ref|YP_920417.1| - 0.066 12.9 0.2 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family AAA_19 PF13245.1 gi|119719922|ref|YP_920417.1| - 0.36 10.6 3.2 2.9 7.6 0.0 3.7 4 0 0 4 4 4 0 Part of AAA domain TBP-binding PF09247.6 gi|119719923|ref|YP_920418.1| - 0.082 13.1 0.1 0.37 11.0 0.0 1.9 2 0 0 2 2 2 0 TATA box-binding protein binding DUF2250 PF10007.4 gi|119719923|ref|YP_920418.1| - 0.13 12.1 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Ribosomal_S25 PF03297.10 gi|119719924|ref|YP_920419.1| - 5.1e-07 29.6 2.1 7.5e-07 29.1 1.5 1.3 1 1 0 1 1 1 1 S25 ribosomal protein PORR PF11955.3 gi|119719924|ref|YP_920419.1| - 0.0044 15.8 0.1 0.0051 15.6 0.1 1.1 1 0 0 1 1 1 1 Plant organelle RNA recognition domain EAP30 PF04157.11 gi|119719924|ref|YP_920419.1| - 0.0063 15.6 0.1 0.01 15.0 0.0 1.3 1 1 0 1 1 1 1 EAP30/Vps36 family Cylicin_N PF15241.1 gi|119719924|ref|YP_920419.1| - 0.014 15.2 0.2 0.023 14.5 0.1 1.4 1 0 0 1 1 1 0 Cylicin N-terminus TrmB PF01978.14 gi|119719924|ref|YP_920419.1| - 0.021 14.4 0.4 0.037 13.7 0.3 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DDRGK PF09756.4 gi|119719924|ref|YP_920419.1| - 0.08 12.3 1.8 0.15 11.4 1.2 1.4 1 1 0 1 1 1 0 DDRGK domain Rad51 PF08423.6 gi|119719925|ref|YP_920420.1| - 1.5e-97 325.5 0.0 1.9e-97 325.2 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|119719925|ref|YP_920420.1| - 2.6e-13 49.8 0.0 4.6e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|119719925|ref|YP_920420.1| - 3.6e-11 42.6 0.0 7.3e-11 41.6 0.0 1.5 1 0 0 1 1 1 1 KaiC RecA PF00154.16 gi|119719925|ref|YP_920420.1| - 2.3e-09 36.7 0.0 3.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|119719925|ref|YP_920420.1| - 6.5e-09 35.8 1.6 5e-06 26.5 0.1 2.9 2 1 0 2 2 2 2 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|119719925|ref|YP_920420.1| - 2.1e-05 23.9 0.0 0.014 14.9 0.0 2.9 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda AAA_22 PF13401.1 gi|119719925|ref|YP_920420.1| - 0.0018 18.4 0.2 0.0049 16.9 0.0 1.8 2 1 0 2 2 2 1 AAA domain Cdd1 PF11731.3 gi|119719925|ref|YP_920420.1| - 0.0025 17.6 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus PAXNEB PF05625.6 gi|119719925|ref|YP_920420.1| - 0.0064 15.3 0.2 0.014 14.2 0.0 1.5 2 0 0 2 2 2 1 PAXNEB protein ABC_tran PF00005.22 gi|119719925|ref|YP_920420.1| - 0.0088 16.3 0.0 0.025 14.8 0.0 1.8 1 1 0 1 1 1 1 ABC transporter HHH PF00633.18 gi|119719925|ref|YP_920420.1| - 0.027 14.1 0.0 0.077 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4332 PF14229.1 gi|119719925|ref|YP_920420.1| - 0.062 13.2 0.1 0.43 10.5 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4332) DUF1805 PF08827.6 gi|119719925|ref|YP_920420.1| - 0.12 12.2 0.0 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1805) UBX PF00789.15 gi|119719926|ref|YP_920421.1| - 0.055 13.5 0.0 10 6.2 0.0 3.1 3 0 0 3 3 3 0 UBX domain HTH_24 PF13412.1 gi|119719927|ref|YP_920422.1| - 3.3e-06 26.3 0.0 0.0055 16.0 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|119719927|ref|YP_920422.1| - 7.1e-05 22.3 0.0 0.0045 16.6 0.0 2.6 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|119719927|ref|YP_920422.1| - 0.0065 16.1 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|119719927|ref|YP_920422.1| - 0.025 14.1 0.3 0.12 11.9 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|119719927|ref|YP_920422.1| - 0.026 14.0 0.6 8.1 6.0 0.0 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|119719927|ref|YP_920422.1| - 0.038 14.0 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator DUF4234 PF14018.1 gi|119719929|ref|YP_920424.1| - 4.8e-06 26.2 8.1 4.8e-06 26.2 5.6 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4234) Bax1-I PF01027.15 gi|119719929|ref|YP_920424.1| - 0.086 12.4 5.0 0.1 12.1 3.5 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4328 PF14219.1 gi|119719929|ref|YP_920424.1| - 0.55 9.5 6.6 0.81 8.9 4.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4328) DUF4227 PF14004.1 gi|119719929|ref|YP_920424.1| - 0.81 9.5 3.8 2.4 8.0 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) UcrQ PF02939.11 gi|119719929|ref|YP_920424.1| - 1.8 8.4 6.1 7.6 6.4 0.4 2.3 1 1 1 2 2 2 0 UcrQ family NdhL PF10716.4 gi|119719929|ref|YP_920424.1| - 6.4 6.6 14.5 0.18 11.6 2.5 2.3 1 1 1 2 2 2 0 NADH dehydrogenase transmembrane subunit Cas_Cas4 PF01930.12 gi|119719930|ref|YP_920425.1| - 0.065 13.1 0.0 0.086 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF83 Rad51 PF08423.6 gi|119719931|ref|YP_920426.1| - 8.3e-69 231.3 0.0 1e-68 231.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|119719931|ref|YP_920426.1| - 1.1e-12 47.7 0.0 1.8e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|119719931|ref|YP_920426.1| - 8.3e-09 34.8 0.4 5.1e-08 32.3 0.3 2.1 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|119719931|ref|YP_920426.1| - 4.5e-08 33.1 0.3 4.5e-08 33.1 0.2 2.1 2 1 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.16 gi|119719931|ref|YP_920426.1| - 7.1e-06 25.3 0.0 9.3e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein RNA_pol_A_CTD PF03118.10 gi|119719931|ref|YP_920426.1| - 0.0043 16.4 0.0 0.011 15.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain HhH-GPD PF00730.20 gi|119719931|ref|YP_920426.1| - 0.027 14.7 0.0 0.053 13.8 0.0 1.6 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein DUF4332 PF14229.1 gi|119719931|ref|YP_920426.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) AAA_22 PF13401.1 gi|119719931|ref|YP_920426.1| - 0.093 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|119719934|ref|YP_920429.1| - 3.9e-44 150.2 0.0 4.9e-44 149.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|119719934|ref|YP_920429.1| - 3.5e-08 33.5 0.0 4.5e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|119719934|ref|YP_920429.1| - 1.2e-06 28.4 0.0 2.1e-05 24.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|119719934|ref|YP_920429.1| - 3.6e-05 24.0 0.1 0.00083 19.6 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|119719934|ref|YP_920429.1| - 0.00058 20.6 0.0 0.0014 19.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|119719934|ref|YP_920429.1| - 0.00069 19.5 0.0 0.0024 17.8 0.0 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase SKI PF01202.17 gi|119719934|ref|YP_920429.1| - 0.001 18.9 0.3 0.027 14.3 0.0 2.3 2 0 0 2 2 2 1 Shikimate kinase KTI12 PF08433.5 gi|119719934|ref|YP_920429.1| - 0.004 16.4 0.0 0.01 15.0 0.0 1.7 1 1 0 1 1 1 1 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|119719934|ref|YP_920429.1| - 0.0061 16.0 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|119719934|ref|YP_920429.1| - 0.014 14.9 0.0 0.032 13.7 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein APS_kinase PF01583.15 gi|119719934|ref|YP_920429.1| - 0.043 13.4 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.1 gi|119719934|ref|YP_920429.1| - 0.046 13.3 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119719934|ref|YP_920429.1| - 0.049 13.3 0.0 0.095 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Herpes_TK PF00693.13 gi|119719934|ref|YP_920429.1| - 0.055 12.6 0.0 3 6.9 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase from herpesvirus CbiA PF01656.18 gi|119719934|ref|YP_920429.1| - 0.14 11.5 0.0 0.34 10.2 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PLDc_2 PF13091.1 gi|119719935|ref|YP_920430.1| - 1.2e-22 79.9 0.4 1.7e-22 79.4 0.3 1.2 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|119719935|ref|YP_920430.1| - 6.3e-07 28.9 0.3 1.4e-06 27.9 0.2 1.5 1 0 0 1 1 1 1 Phospholipase D Active site motif PP_kinase_C PF13090.1 gi|119719935|ref|YP_920430.1| - 0.00011 20.9 0.2 0.00013 20.6 0.1 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain Regulator_TrmB PF11495.3 gi|119719935|ref|YP_920430.1| - 0.00011 21.2 0.5 0.00015 20.8 0.3 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HMG_box PF00505.14 gi|119719936|ref|YP_920431.1| - 0.05 13.8 0.0 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 HMG (high mobility group) box DUF2663 PF10864.3 gi|119719936|ref|YP_920431.1| - 0.1 12.7 0.2 0.13 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2663) Aldolase_2 PF10120.4 gi|119719937|ref|YP_920432.1| - 2.6e-39 134.3 0.0 4.1e-39 133.6 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase AIRS_C PF02769.17 gi|119719937|ref|YP_920432.1| - 3.8e-11 43.2 0.4 4.9e-10 39.6 0.1 2.4 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|119719937|ref|YP_920432.1| - 1.2e-06 28.6 0.0 8.9e-06 25.8 0.0 2.4 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain tRNA_SAD PF07973.9 gi|119719938|ref|YP_920433.1| - 2.5e-10 40.0 0.1 4.1e-10 39.3 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|119719938|ref|YP_920433.1| - 1.1e-06 27.3 0.0 1.4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) Methyltransf_23 PF13489.1 gi|119719939|ref|YP_920434.1| - 7.6e-12 45.2 0.0 1e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|119719939|ref|YP_920434.1| - 1.2e-08 35.2 0.0 1.9e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119719939|ref|YP_920434.1| - 9.5e-05 22.8 0.0 0.0002 21.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119719939|ref|YP_920434.1| - 0.016 15.8 0.0 0.11 13.0 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119719939|ref|YP_920434.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain DUF1610 PF07754.6 gi|119719940|ref|YP_920435.1| - 3.1e-06 27.1 2.9 0.0059 16.6 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) HypA PF01155.14 gi|119719940|ref|YP_920435.1| - 0.0052 16.4 0.1 0.016 14.8 0.0 1.8 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family Cys_rich_CPCC PF14206.1 gi|119719940|ref|YP_920435.1| - 0.01 15.4 0.4 0.017 14.6 0.3 1.3 1 0 0 1 1 1 1 Cysteine-rich CPCC DUF2296 PF10058.4 gi|119719940|ref|YP_920435.1| - 0.016 14.9 0.8 3.4 7.5 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF1451 PF07295.6 gi|119719940|ref|YP_920435.1| - 0.016 14.9 0.2 0.59 9.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) UPF0547 PF10571.4 gi|119719940|ref|YP_920435.1| - 0.031 13.9 2.7 0.057 13.1 1.9 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.1 gi|119719940|ref|YP_920435.1| - 0.034 13.9 3.1 2.1 8.2 0.1 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 PhnA_Zn_Ribbon PF08274.7 gi|119719940|ref|YP_920435.1| - 0.042 13.6 0.8 0.078 12.7 0.6 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon DZR PF12773.2 gi|119719940|ref|YP_920435.1| - 0.048 13.4 0.1 0.085 12.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|119719940|ref|YP_920435.1| - 0.056 12.7 1.4 0.1 11.9 0.9 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|119719940|ref|YP_920435.1| - 0.073 12.9 1.1 4.8 7.1 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|119719940|ref|YP_920435.1| - 0.091 12.2 4.4 0.41 10.2 3.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|119719940|ref|YP_920435.1| - 0.11 12.2 0.2 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2892 PF11127.3 gi|119719940|ref|YP_920435.1| - 0.35 10.7 2.9 0.82 9.5 2.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF35_N PF12172.3 gi|119719940|ref|YP_920435.1| - 0.42 10.5 3.2 1.3 9.0 2.2 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|119719940|ref|YP_920435.1| - 0.49 9.6 6.9 9.2 5.6 5.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|119719940|ref|YP_920435.1| - 2.4 8.6 3.4 13 6.3 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DNA_ligase_ZBD PF03119.11 gi|119719941|ref|YP_920436.1| - 0.00021 20.8 3.3 0.0092 15.6 0.3 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|119719941|ref|YP_920436.1| - 0.00082 18.4 4.9 0.0037 16.4 3.4 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-Di19 PF05605.7 gi|119719941|ref|YP_920436.1| - 0.0022 18.0 0.7 0.43 10.7 0.0 2.5 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding zf-NADH-PPase PF09297.6 gi|119719941|ref|YP_920436.1| - 0.0038 16.6 0.5 0.0082 15.6 0.3 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|119719941|ref|YP_920436.1| - 0.012 15.0 7.8 0.22 11.0 4.4 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|119719941|ref|YP_920436.1| - 0.015 15.2 1.7 0.69 9.9 0.1 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-CHCC PF10276.4 gi|119719941|ref|YP_920436.1| - 0.017 14.9 1.9 0.61 9.9 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger domain Cys_rich_CPXG PF14255.1 gi|119719941|ref|YP_920436.1| - 0.018 14.8 2.5 2.5 7.9 0.2 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.2 gi|119719941|ref|YP_920436.1| - 0.023 14.5 0.4 0.039 13.7 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|119719941|ref|YP_920436.1| - 0.054 13.1 0.4 0.097 12.3 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|119719941|ref|YP_920436.1| - 0.087 12.7 0.4 0.13 12.1 0.3 1.2 1 0 0 1 1 1 0 IBR domain TF_Zn_Ribbon PF08271.7 gi|119719941|ref|YP_920436.1| - 0.13 11.5 3.2 0.3 10.4 2.3 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-Mss51 PF13824.1 gi|119719941|ref|YP_920436.1| - 0.15 11.9 0.9 0.26 11.1 0.6 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_4 PF13894.1 gi|119719941|ref|YP_920436.1| - 0.15 12.4 0.4 18 5.9 0.0 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|119719941|ref|YP_920436.1| - 0.23 11.1 0.8 1.4 8.5 0.7 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|119719941|ref|YP_920436.1| - 0.56 10.2 4.8 10 6.2 3.6 2.3 1 1 1 2 2 2 0 zinc-finger Molybdop_Fe4S4 PF04879.11 gi|119719941|ref|YP_920436.1| - 0.68 9.7 2.8 17 5.3 0.3 2.3 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain UPF0547 PF10571.4 gi|119719941|ref|YP_920436.1| - 0.72 9.6 4.8 1.7 8.4 2.5 2.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Pab87_oct PF13969.1 gi|119719942|ref|YP_920437.1| - 0.03 14.4 0.3 6 7.0 0.0 2.9 1 1 2 3 3 3 0 Pab87 octamerisation domain Band_7_1 PF13421.1 gi|119719943|ref|YP_920438.1| - 5.8e-34 117.4 0.0 8.6e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.20 gi|119719943|ref|YP_920438.1| - 6e-21 75.1 0.0 7.6e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family zf-ribbon_3 PF13248.1 gi|119719943|ref|YP_920438.1| - 6.5e-20 69.7 14.6 1.1e-10 40.3 2.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|119719943|ref|YP_920438.1| - 4.9e-19 67.6 12.1 3.6e-10 39.3 1.8 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|119719943|ref|YP_920438.1| - 2e-16 58.8 13.2 8.3e-09 34.6 2.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|119719943|ref|YP_920438.1| - 9.4e-14 50.9 10.0 1.6e-13 50.2 6.9 1.4 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|119719943|ref|YP_920438.1| - 1.7e-05 24.4 5.0 0.015 15.0 0.7 2.2 2 0 0 2 2 2 2 Prokaryotic RING finger family 1 DUF2116 PF09889.4 gi|119719943|ref|YP_920438.1| - 0.0019 17.9 4.5 0.036 13.8 0.1 2.3 1 1 1 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) DNA_RNApol_7kD PF03604.8 gi|119719943|ref|YP_920438.1| - 0.02 14.3 3.7 0.6 9.6 0.1 2.7 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|119719943|ref|YP_920438.1| - 0.022 14.4 6.1 0.84 9.3 0.6 2.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-DHHC PF01529.15 gi|119719943|ref|YP_920438.1| - 0.022 14.1 4.2 0.76 9.1 0.1 2.2 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF329 PF03884.9 gi|119719943|ref|YP_920438.1| - 0.05 13.1 11.9 0.7 9.4 1.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-NADH-PPase PF09297.6 gi|119719943|ref|YP_920438.1| - 0.14 11.6 15.9 6 6.4 0.0 3.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-C2HC_2 PF13913.1 gi|119719943|ref|YP_920438.1| - 0.27 10.9 0.0 0.27 10.9 0.0 4.2 4 0 0 4 4 4 0 zinc-finger of a C2HC-type DUF3330 PF11809.3 gi|119719943|ref|YP_920438.1| - 0.32 10.8 4.3 1.7 8.6 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3330) DUF35_N PF12172.3 gi|119719943|ref|YP_920438.1| - 0.41 10.6 13.9 0.4 10.6 1.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PRP21_like_P PF12230.3 gi|119719943|ref|YP_920438.1| - 0.49 9.8 1.2 12 5.2 0.0 2.1 2 0 0 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein HypA PF01155.14 gi|119719943|ref|YP_920438.1| - 0.78 9.4 7.1 9.1 6.0 2.5 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-dskA_traR PF01258.12 gi|119719943|ref|YP_920438.1| - 0.95 9.2 10.2 2.2 8.1 1.0 2.6 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Sgf11 PF08209.6 gi|119719943|ref|YP_920438.1| - 0.98 8.7 13.7 0.35 10.2 0.4 3.5 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.1 gi|119719943|ref|YP_920438.1| - 2.1 8.1 13.8 8.1 6.2 0.1 4.2 4 0 0 4 4 4 0 Nudix N-terminal zf-C3HC4_3 PF13920.1 gi|119719943|ref|YP_920438.1| - 2.2 8.0 12.3 0.58 9.8 1.0 3.0 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-LITAF-like PF10601.4 gi|119719943|ref|YP_920438.1| - 2.7 7.9 11.6 0.3 10.9 0.5 3.1 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain Ribosomal_L32p PF01783.18 gi|119719943|ref|YP_920438.1| - 3.2 8.0 5.3 3.9 7.7 0.2 2.3 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-IS66 PF13005.2 gi|119719943|ref|YP_920438.1| - 8.9 6.3 14.4 34 4.5 0.1 4.7 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF164 PF02591.10 gi|119719943|ref|YP_920438.1| - 9 6.2 10.0 48 3.8 0.1 4.1 4 0 0 4 4 4 0 Putative zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|119719943|ref|YP_920438.1| - 9.3 6.2 16.5 7.6 6.5 0.5 4.0 2 1 1 3 3 3 0 Zinc ribbon domain DUF3940 PF13076.1 gi|119719945|ref|YP_920440.1| - 0.0092 15.5 0.6 0.04 13.4 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3940) Lactate_perm PF02652.9 gi|119719946|ref|YP_920441.1| - 1.5e-36 126.0 43.3 2.1e-21 76.0 8.9 2.1 1 1 1 2 2 2 2 L-lactate permease MOZART2 PF12926.2 gi|119719946|ref|YP_920441.1| - 0.0048 16.4 0.2 0.016 14.7 0.2 2.0 1 0 0 1 1 1 1 Mitotic-spindle organizing gamma-tubulin ring associated TPPK_C PF12555.3 gi|119719947|ref|YP_920442.1| - 0.042 13.5 1.1 0.096 12.4 0.8 1.7 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal UbiA PF01040.13 gi|119719948|ref|YP_920443.1| - 6.2e-35 120.6 30.6 7.6e-35 120.3 21.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family E1-E2_ATPase PF00122.15 gi|119719948|ref|YP_920443.1| - 0.088 11.8 3.3 0.18 10.8 2.3 1.5 1 0 0 1 1 1 0 E1-E2 ATPase VSP PF03302.8 gi|119719948|ref|YP_920443.1| - 0.37 9.3 1.5 0.63 8.6 1.1 1.3 1 0 0 1 1 1 0 Giardia variant-specific surface protein NUDIX PF00293.23 gi|119719949|ref|YP_920444.1| - 2.1e-16 59.8 0.3 2.6e-16 59.4 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain UbiA PF01040.13 gi|119719950|ref|YP_920445.1| - 3.7e-39 134.5 27.0 4.6e-39 134.1 18.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF485 PF04341.7 gi|119719950|ref|YP_920445.1| - 0.15 11.8 0.1 0.15 11.8 0.1 4.6 3 1 2 5 5 5 0 Protein of unknown function, DUF485 MFS_1 PF07690.11 gi|119719951|ref|YP_920446.1| - 2.9e-39 134.7 50.1 1.2e-29 103.1 14.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|119719951|ref|YP_920446.1| - 3.2e-08 32.6 17.6 3.7e-08 32.3 3.9 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|119719951|ref|YP_920446.1| - 3.5e-07 28.7 10.8 9e-05 20.7 1.0 2.2 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|119719951|ref|YP_920446.1| - 5.2e-06 25.1 12.4 0.003 16.0 0.2 2.2 2 0 0 2 2 2 2 MFS/sugar transport protein Nuc_H_symport PF03825.11 gi|119719951|ref|YP_920446.1| - 0.00051 18.9 0.6 0.00051 18.9 0.4 1.9 2 0 0 2 2 2 1 Nucleoside H+ symporter MFS_1_like PF12832.2 gi|119719951|ref|YP_920446.1| - 0.011 15.4 0.2 0.034 13.9 0.0 2.0 2 0 0 2 2 2 0 MFS_1 like family DUF751 PF05421.6 gi|119719951|ref|YP_920446.1| - 6 7.2 8.3 7 7.0 1.7 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF751) NAD_synthase PF02540.12 gi|119719952|ref|YP_920447.1| - 9.1e-68 227.7 0.0 1.1e-67 227.4 0.0 1.1 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|119719952|ref|YP_920447.1| - 0.00065 18.3 0.0 0.039 12.4 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase PhosphMutase PF10143.4 gi|119719954|ref|YP_920449.1| - 1.4e-54 184.2 0.0 1.9e-54 183.8 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|119719954|ref|YP_920449.1| - 2.7e-34 118.6 0.0 3.4e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|119719954|ref|YP_920449.1| - 0.023 14.0 0.2 0.037 13.3 0.1 1.2 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|119719954|ref|YP_920449.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 PglZ domain Alk_phosphatase PF00245.15 gi|119719954|ref|YP_920449.1| - 0.11 11.1 0.0 0.22 10.1 0.0 1.4 2 0 0 2 2 2 0 Alkaline phosphatase V4R PF02830.13 gi|119719955|ref|YP_920450.1| - 1.1e-05 25.2 0.1 1.8e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 V4R domain ACT_5 PF13710.1 gi|119719955|ref|YP_920450.1| - 0.001 18.8 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|119719955|ref|YP_920450.1| - 0.028 13.9 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 ACT domain HTH_9 PF08221.6 gi|119719956|ref|YP_920451.1| - 7.4e-06 25.7 0.5 1.4e-05 24.8 0.4 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.14 gi|119719956|ref|YP_920451.1| - 0.0021 17.7 0.2 0.0034 17.0 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|119719956|ref|YP_920451.1| - 0.0068 16.0 0.1 0.017 14.7 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|119719956|ref|YP_920451.1| - 0.0078 15.5 0.1 0.027 13.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|119719956|ref|YP_920451.1| - 0.01 15.3 0.0 0.021 14.3 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.5 gi|119719956|ref|YP_920451.1| - 0.022 14.3 0.2 0.05 13.1 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|119719956|ref|YP_920451.1| - 0.022 14.3 0.0 0.32 10.5 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|119719956|ref|YP_920451.1| - 0.022 14.4 0.1 0.21 11.2 0.1 2.3 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|119719956|ref|YP_920451.1| - 0.046 14.0 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF998 PF06197.8 gi|119719957|ref|YP_920452.1| - 3.8e-27 94.7 27.6 4.3e-27 94.6 19.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF3098 PF11297.3 gi|119719957|ref|YP_920452.1| - 0.59 9.8 7.6 0.1 12.3 2.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3098) DUF872 PF05915.7 gi|119719957|ref|YP_920452.1| - 3.8 7.4 8.9 0.28 11.0 1.0 2.4 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Flavi_NS4A PF01350.12 gi|119719957|ref|YP_920452.1| - 4.1 6.9 8.2 8.8 5.8 0.4 2.2 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A ECF-ribofla_trS PF07155.7 gi|119719958|ref|YP_920453.1| - 0.0012 18.6 12.8 0.0012 18.6 8.9 2.1 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component GHMP_kinases_N PF00288.21 gi|119719959|ref|YP_920454.1| - 1e-08 35.1 5.3 4.4e-08 33.0 3.8 2.0 1 1 1 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|119719959|ref|YP_920454.1| - 2.5e-06 27.5 0.1 2.5e-06 27.5 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal DUF222 PF02720.12 gi|119719959|ref|YP_920454.1| - 0.21 10.6 2.3 0.55 9.3 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF222) Acylphosphatase PF00708.13 gi|119719960|ref|YP_920455.1| - 2.4e-28 98.0 0.0 2.6e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase LON PF02190.11 gi|119719960|ref|YP_920455.1| - 0.043 13.4 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 ATP-dependent protease La (LON) domain MoeA_N PF03453.12 gi|119719961|ref|YP_920456.1| - 4.1e-40 136.7 0.0 6e-40 136.2 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoeA_C PF03454.10 gi|119719961|ref|YP_920456.1| - 5.8e-19 67.8 0.6 6e-17 61.3 0.1 2.6 2 0 0 2 2 2 2 MoeA C-terminal region (domain IV) MoCF_biosynth PF00994.19 gi|119719961|ref|YP_920456.1| - 9.8e-19 67.1 0.0 1.5e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|119719962|ref|YP_920457.1| - 1.2e-52 177.6 0.3 2.6e-52 176.6 0.2 1.5 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|119719962|ref|YP_920457.1| - 9e-46 155.1 0.1 3.7e-45 153.1 0.1 1.9 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|119719962|ref|YP_920457.1| - 2.3e-23 82.2 0.0 1.5e-22 79.5 0.0 2.3 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|119719962|ref|YP_920457.1| - 1.9e-09 37.3 1.9 5.1e-09 35.9 0.0 2.7 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) PBP_like_2 PF12849.2 gi|119719962|ref|YP_920457.1| - 0.0084 15.6 0.0 1.6 8.1 0.0 2.6 3 0 0 3 3 3 2 PBP superfamily domain Phosphonate-bd PF12974.2 gi|119719962|ref|YP_920457.1| - 0.1 11.9 0.0 0.25 10.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_8 PF13416.1 gi|119719963|ref|YP_920458.1| - 5.6e-36 124.7 6.2 7.3e-36 124.3 4.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119719963|ref|YP_920458.1| - 5.6e-27 95.2 8.8 8.5e-27 94.6 6.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Cyto_ox_2 PF02322.10 gi|119719963|ref|YP_920458.1| - 0.027 13.6 0.1 0.041 13.0 0.1 1.2 1 0 0 1 1 1 0 Cytochrome oxidase subunit II BPD_transp_1 PF00528.17 gi|119719964|ref|YP_920459.1| - 2.5e-17 63.0 20.3 2.5e-17 63.0 14.1 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119719965|ref|YP_920460.1| - 6.1e-22 78.0 14.3 6.1e-22 78.0 9.9 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.3 gi|119719965|ref|YP_920460.1| - 0.059 12.5 3.7 3.5 6.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3169) FtsX PF02687.16 gi|119719965|ref|YP_920460.1| - 0.95 9.2 21.5 0.18 11.5 0.8 3.4 2 1 1 3 3 3 0 FtsX-like permease family PBP_like_2 PF12849.2 gi|119719966|ref|YP_920461.1| - 6.6e-58 196.4 0.5 8.5e-58 196.0 0.4 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|119719966|ref|YP_920461.1| - 1.3e-16 61.2 1.3 3.3e-16 59.9 0.9 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|119719966|ref|YP_920461.1| - 2.7e-10 39.5 0.0 2.6e-09 36.2 0.0 2.1 1 1 0 1 1 1 1 PBP superfamily domain HCV_NS4a PF01006.15 gi|119719966|ref|YP_920461.1| - 0.023 14.2 0.1 0.071 12.6 0.0 1.8 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a BPD_transp_1 PF00528.17 gi|119719967|ref|YP_920462.1| - 2.5e-08 33.6 16.5 2.5e-08 33.6 11.4 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119719968|ref|YP_920463.1| - 5.1e-16 58.7 10.9 5.1e-16 58.7 7.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|119719969|ref|YP_920464.1| - 5.2e-30 104.5 0.0 8.8e-30 103.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119719969|ref|YP_920464.1| - 5.7e-15 56.0 0.0 4.4e-10 40.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119719969|ref|YP_920464.1| - 4.5e-09 35.8 0.0 6.6e-08 32.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|119719969|ref|YP_920464.1| - 1.6e-06 27.4 0.0 8.4e-05 21.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|119719969|ref|YP_920464.1| - 3.9e-05 23.7 0.7 0.0002 21.3 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|119719969|ref|YP_920464.1| - 0.00012 22.2 0.1 0.00057 20.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|119719969|ref|YP_920464.1| - 0.00039 20.3 0.2 0.0051 16.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119719969|ref|YP_920464.1| - 0.0013 18.2 0.0 0.0026 17.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|119719969|ref|YP_920464.1| - 0.0029 17.4 0.0 0.041 13.7 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|119719969|ref|YP_920464.1| - 0.0035 16.5 0.0 0.0085 15.2 0.0 1.6 2 0 0 2 2 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|119719969|ref|YP_920464.1| - 0.0047 16.6 0.1 0.019 14.7 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase AAA PF00004.24 gi|119719969|ref|YP_920464.1| - 0.0055 16.8 0.0 0.33 11.1 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|119719969|ref|YP_920464.1| - 0.0083 15.7 0.0 0.021 14.3 0.0 1.7 2 0 0 2 2 1 1 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.1 gi|119719969|ref|YP_920464.1| - 0.0088 15.7 0.2 0.052 13.2 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|119719969|ref|YP_920464.1| - 0.011 16.5 0.1 0.022 15.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|119719969|ref|YP_920464.1| - 0.011 16.0 0.0 0.02 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|119719969|ref|YP_920464.1| - 0.016 14.7 0.0 0.058 12.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|119719969|ref|YP_920464.1| - 0.02 14.3 0.0 0.085 12.2 0.0 1.8 1 1 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|119719969|ref|YP_920464.1| - 0.024 14.5 0.0 0.062 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|119719969|ref|YP_920464.1| - 0.033 13.8 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.10 gi|119719969|ref|YP_920464.1| - 0.036 12.7 0.0 0.042 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|119719969|ref|YP_920464.1| - 0.036 12.6 0.0 1.2 7.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Adeno_IVa2 PF02456.10 gi|119719969|ref|YP_920464.1| - 0.05 12.2 0.0 0.07 11.7 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_24 PF13479.1 gi|119719969|ref|YP_920464.1| - 0.051 13.1 0.0 0.1 12.1 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.1 gi|119719969|ref|YP_920464.1| - 0.062 13.2 0.0 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119719969|ref|YP_920464.1| - 0.078 13.2 0.0 0.33 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|119719969|ref|YP_920464.1| - 0.08 13.1 0.0 0.18 11.9 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA_PrkA PF08298.6 gi|119719969|ref|YP_920464.1| - 0.094 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain Zeta_toxin PF06414.7 gi|119719969|ref|YP_920464.1| - 0.1 11.7 0.0 4.6 6.2 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.9 gi|119719969|ref|YP_920464.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|119719969|ref|YP_920464.1| - 0.11 11.3 0.0 0.25 10.1 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|119719969|ref|YP_920464.1| - 0.12 12.0 0.0 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.13 gi|119719969|ref|YP_920464.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NYN_YacP PF05991.6 gi|119719969|ref|YP_920464.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 YacP-like NYN domain Amidohydro_4 PF13147.1 gi|119719970|ref|YP_920465.1| - 3.3e-05 24.0 0.5 0.14 12.1 0.1 2.4 2 1 0 2 2 2 2 Amidohydrolase TatD_DNase PF01026.16 gi|119719970|ref|YP_920465.1| - 0.0029 16.8 0.0 0.007 15.5 0.0 1.6 2 0 0 2 2 2 1 TatD related DNase Amidohydro_1 PF01979.15 gi|119719970|ref|YP_920465.1| - 0.012 15.3 0.0 0.71 9.4 0.0 2.1 2 0 0 2 2 2 0 Amidohydrolase family Amidohydro_5 PF13594.1 gi|119719970|ref|YP_920465.1| - 0.036 13.8 0.0 0.15 11.9 0.0 2.1 3 0 0 3 3 3 0 Amidohydrolase IMPDH PF00478.20 gi|119719971|ref|YP_920466.1| - 6.5e-110 367.3 0.3 8.9e-110 366.8 0.2 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|119719971|ref|YP_920466.1| - 1.4e-11 43.8 0.3 7.3e-10 38.2 0.2 2.8 3 1 0 3 3 3 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|119719971|ref|YP_920466.1| - 8.8e-08 31.6 11.1 0.0041 16.3 6.8 2.2 1 1 1 2 2 2 2 Nitronate monooxygenase His_biosynth PF00977.16 gi|119719971|ref|YP_920466.1| - 1.1e-05 24.8 0.9 0.013 14.7 0.2 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|119719971|ref|YP_920466.1| - 0.00046 19.2 2.1 0.00046 19.2 1.4 1.9 1 1 1 2 2 2 1 Conserved region in glutamate synthase Dus PF01207.12 gi|119719971|ref|YP_920466.1| - 0.0031 16.3 0.0 0.0051 15.6 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|119719971|ref|YP_920466.1| - 0.009 15.1 0.8 0.009 15.1 0.6 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG EAL PF00563.15 gi|119719971|ref|YP_920466.1| - 0.012 15.0 0.2 0.12 11.8 0.0 2.0 2 0 0 2 2 2 0 EAL domain PcrB PF01884.12 gi|119719971|ref|YP_920466.1| - 0.015 14.6 6.4 0.39 9.9 0.3 2.8 3 1 0 3 3 3 0 PcrB family QRPTase_C PF01729.14 gi|119719971|ref|YP_920466.1| - 0.023 14.2 0.2 0.76 9.2 0.0 2.2 1 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IGPS PF00218.16 gi|119719971|ref|YP_920466.1| - 0.035 13.1 0.2 0.084 11.9 0.0 1.7 3 0 0 3 3 3 0 Indole-3-glycerol phosphate synthase Cys_Met_Meta_PP PF01053.15 gi|119719971|ref|YP_920466.1| - 0.095 10.9 0.1 0.78 7.9 0.0 1.9 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme TMP-TENI PF02581.12 gi|119719971|ref|YP_920466.1| - 0.15 11.1 2.0 2.3 7.2 0.5 2.2 1 1 2 3 3 3 0 Thiamine monophosphate synthase/TENI NanE PF04131.9 gi|119719971|ref|YP_920466.1| - 0.19 10.6 3.3 0.82 8.6 0.1 2.6 1 1 1 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|119719971|ref|YP_920466.1| - 0.24 10.3 6.4 1.1 8.1 0.4 2.9 2 1 0 3 3 3 0 Dihydroorotate dehydrogenase PhoU PF01895.14 gi|119719972|ref|YP_920467.1| - 5.1e-12 46.0 0.3 8.6e-11 42.1 0.0 2.5 2 0 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|119719972|ref|YP_920467.1| - 1e-08 34.7 0.1 2.3e-08 33.5 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1508 PF07411.7 gi|119719972|ref|YP_920467.1| - 0.026 13.9 0.0 0.059 12.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1508) ParBc PF02195.13 gi|119719973|ref|YP_920468.1| - 1.4e-12 47.5 0.2 2.1e-12 46.9 0.1 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|119719973|ref|YP_920468.1| - 0.074 12.8 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Putative ParB-like nuclease Acetyltransf_1 PF00583.19 gi|119719975|ref|YP_920470.1| - 1.9e-19 69.4 0.1 2.3e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|119719975|ref|YP_920470.1| - 1.5e-11 44.2 0.1 1.8e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|119719975|ref|YP_920470.1| - 1.1e-07 31.5 0.0 1.5e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|119719975|ref|YP_920470.1| - 1.6e-07 31.3 0.1 1.9e-07 31.0 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|119719975|ref|YP_920470.1| - 1.6e-07 31.4 0.0 1.8e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|119719975|ref|YP_920470.1| - 4.5e-06 26.3 0.0 5.7e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|119719975|ref|YP_920470.1| - 1e-05 25.5 0.0 1.3e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|119719975|ref|YP_920470.1| - 3.2e-05 23.7 0.0 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|119719975|ref|YP_920470.1| - 5.1e-05 23.4 0.0 5.4e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|119719975|ref|YP_920470.1| - 0.00077 19.0 0.0 0.00091 18.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PhoU PF01895.14 gi|119719976|ref|YP_920471.1| - 1.8e-21 76.3 3.3 3.7e-14 52.9 0.1 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|119719976|ref|YP_920471.1| - 5.5e-11 41.9 0.3 1.5e-10 40.5 0.2 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE LcrG PF07216.7 gi|119719976|ref|YP_920471.1| - 0.15 12.0 0.4 4.3 7.4 0.0 2.5 2 1 0 2 2 2 0 LcrG protein Oxidored_q6 PF01058.17 gi|119719977|ref|YP_920472.1| - 1.2e-30 105.8 0.2 1.3e-30 105.6 0.1 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF2367 PF10164.4 gi|119719977|ref|YP_920472.1| - 0.37 10.6 4.4 0.073 12.9 0.6 1.7 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2367) Complex1_49kDa PF00346.14 gi|119719978|ref|YP_920473.1| - 1.8e-51 174.7 0.0 1.5e-33 116.0 0.0 2.7 2 1 1 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|119719978|ref|YP_920473.1| - 5e-24 84.5 0.0 2.2e-23 82.4 0.0 2.0 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|119719978|ref|YP_920473.1| - 4.3e-13 48.8 0.3 1.1e-11 44.2 0.0 2.8 3 1 0 3 3 3 1 Nickel-dependent hydrogenase Fer4 PF00037.22 gi|119719979|ref|YP_920474.1| - 7.4e-15 53.8 9.0 4.1e-07 29.3 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119719979|ref|YP_920474.1| - 7.2e-11 42.1 8.1 1e-10 41.6 5.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119719979|ref|YP_920474.1| - 2.4e-10 40.0 6.5 6e-10 38.7 4.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119719979|ref|YP_920474.1| - 2.5e-10 40.5 7.8 5.2e-10 39.5 5.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119719979|ref|YP_920474.1| - 2.6e-10 40.8 5.2 2.9e-05 24.7 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|119719979|ref|YP_920474.1| - 8.5e-10 38.0 10.7 6.6e-06 25.7 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119719979|ref|YP_920474.1| - 2e-09 37.1 4.8 2.4e-05 24.1 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719979|ref|YP_920474.1| - 2.4e-07 30.2 10.7 0.00016 21.4 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|119719979|ref|YP_920474.1| - 1.1e-06 28.4 19.5 1.6e-05 24.8 6.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119719979|ref|YP_920474.1| - 2.9e-05 24.2 8.9 9.9e-05 22.6 6.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119719979|ref|YP_920474.1| - 3.9e-05 23.6 12.7 0.014 15.6 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|119719979|ref|YP_920474.1| - 7.2e-05 23.1 5.7 0.082 13.3 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|119719979|ref|YP_920474.1| - 0.00037 21.0 9.6 0.016 15.7 0.4 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|119719979|ref|YP_920474.1| - 0.0038 17.5 9.5 0.4 11.0 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|119719979|ref|YP_920474.1| - 0.013 15.9 18.5 0.15 12.6 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|119719979|ref|YP_920474.1| - 5.9 6.7 6.7 4.6 7.1 1.2 2.4 2 0 0 2 2 2 0 Divergent 4Fe-4S mono-cluster NADHdh PF00146.16 gi|119719980|ref|YP_920475.1| - 1.8e-49 168.5 13.6 2.2e-49 168.1 9.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase PsbN PF02468.10 gi|119719980|ref|YP_920475.1| - 3.2 7.4 6.9 1.1 8.9 0.9 2.8 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) DUF3816 PF12822.2 gi|119719981|ref|YP_920476.1| - 0.017 14.9 19.0 0.025 14.4 13.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) DUF1453 PF07301.6 gi|119719981|ref|YP_920476.1| - 0.13 12.0 8.5 0.071 12.9 4.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1453) DUF2079 PF09852.4 gi|119719981|ref|YP_920476.1| - 0.36 9.4 13.0 0.26 9.9 8.1 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2079) VSP PF03302.8 gi|119719981|ref|YP_920476.1| - 0.39 9.2 1.5 0.46 9.0 1.0 1.1 1 0 0 1 1 1 0 Giardia variant-specific surface protein Oxidored_q3 PF00499.15 gi|119719981|ref|YP_920476.1| - 0.59 9.9 18.3 1.8 8.3 12.7 1.7 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Amnionless PF14828.1 gi|119719981|ref|YP_920476.1| - 0.94 7.8 3.3 0.6 8.5 1.6 1.5 1 1 0 1 1 1 0 Amnionless Bax1-I PF01027.15 gi|119719981|ref|YP_920476.1| - 1.7 8.2 23.5 4.4 6.8 16.4 1.7 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF1212 PF06738.7 gi|119719981|ref|YP_920476.1| - 3.4 7.0 12.5 5.8 6.3 8.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) DUF872 PF05915.7 gi|119719981|ref|YP_920476.1| - 4.5 7.1 10.5 6 6.7 2.5 2.6 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF975 PF06161.6 gi|119719981|ref|YP_920476.1| - 5 6.7 12.5 9.4 5.8 8.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF975) Oxidored_q2 PF00420.19 gi|119719982|ref|YP_920477.1| - 1.5e-07 30.8 0.7 1.7e-07 30.7 0.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GlutR_N PF05201.10 gi|119719982|ref|YP_920477.1| - 0.098 12.2 0.1 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, N-terminal domain UL73_N PF12522.3 gi|119719982|ref|YP_920477.1| - 0.14 11.7 1.0 0.14 11.7 0.7 3.0 3 0 0 3 3 3 0 Cytomegalovirus glycoprotein N terminal NfeD PF01957.13 gi|119719982|ref|YP_920477.1| - 0.47 10.5 6.1 1.1 9.3 4.3 1.6 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding MerC PF03203.9 gi|119719982|ref|YP_920477.1| - 5.8 7.3 7.9 7.5 6.9 0.3 2.1 1 1 1 2 2 2 0 MerC mercury resistance protein Oxidored_q1 PF00361.15 gi|119719983|ref|YP_920478.1| - 1e-73 247.9 8.6 1e-73 247.9 6.0 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|119719983|ref|YP_920478.1| - 2.9e-07 29.9 0.2 1.4e-06 27.7 0.2 2.3 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|119719984|ref|YP_920479.1| - 3.3e-53 180.7 7.6 3.3e-53 180.7 5.2 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|119719984|ref|YP_920479.1| - 0.00061 19.0 4.9 0.00061 19.0 3.4 2.0 1 1 1 2 2 2 1 NADH dehydrogenase I, subunit N related protein DUF3112 PF11309.3 gi|119719984|ref|YP_920479.1| - 0.037 13.8 2.5 0.062 13.0 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3112) Consortin_C PF15281.1 gi|119719984|ref|YP_920479.1| - 0.26 10.7 1.8 7.9 6.0 0.0 2.7 2 0 0 2 2 2 0 Consortin C-terminus Oxidored_q4 PF00507.14 gi|119719985|ref|YP_920480.1| - 1.2e-05 25.0 0.0 1.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 UPF0104 PF03706.8 gi|119719985|ref|YP_920480.1| - 0.034 13.4 3.1 2.2 7.4 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0104) DUF3357 PF11837.3 gi|119719985|ref|YP_920480.1| - 0.11 12.3 0.1 16 5.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) BphX PF06139.7 gi|119719985|ref|YP_920480.1| - 0.88 9.1 3.3 0.2 11.2 0.2 1.4 2 0 0 2 2 2 0 BphX-like Oxidored_q6 PF01058.17 gi|119719986|ref|YP_920481.1| - 1.1e-21 76.7 0.0 1.5e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.14 gi|119719987|ref|YP_920482.1| - 5.5e-34 116.5 0.0 6.8e-34 116.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.14 gi|119719988|ref|YP_920483.1| - 4.8e-61 206.1 0.0 6.6e-61 205.7 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RhgB_N PF09284.5 gi|119719988|ref|YP_920483.1| - 0.21 10.9 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Rhamnogalacturonase B, N-terminal NADHdh PF00146.16 gi|119719989|ref|YP_920484.1| - 9.2e-61 205.5 16.8 1.1e-60 205.2 11.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q1 PF00361.15 gi|119719989|ref|YP_920484.1| - 0.011 15.0 2.5 0.011 15.0 1.8 2.6 2 1 0 2 2 2 0 NADH-Ubiquinone/plastoquinone (complex I), various chains Fer4 PF00037.22 gi|119719990|ref|YP_920485.1| - 2e-16 58.8 13.2 4.1e-08 32.4 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|119719990|ref|YP_920485.1| - 2e-14 53.6 18.5 1.1e-10 41.6 7.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119719990|ref|YP_920485.1| - 4e-12 45.4 14.3 3.6e-07 29.7 1.5 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119719990|ref|YP_920485.1| - 6.5e-10 38.7 6.4 9.4e-10 38.2 4.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119719990|ref|YP_920485.1| - 1.3e-09 37.3 11.8 4.9e-05 23.0 1.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|119719990|ref|YP_920485.1| - 2.3e-09 37.8 4.3 0.00039 21.1 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|119719990|ref|YP_920485.1| - 2.8e-09 36.6 10.1 5.4e-09 35.7 7.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119719990|ref|YP_920485.1| - 1.1e-08 35.1 11.1 2.1e-08 34.2 7.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119719990|ref|YP_920485.1| - 7.9e-08 32.0 12.7 0.00087 19.4 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|119719990|ref|YP_920485.1| - 6.6e-07 29.2 9.2 1.9e-06 27.8 6.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119719990|ref|YP_920485.1| - 3.7e-06 27.1 8.5 0.0033 17.7 6.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|119719990|ref|YP_920485.1| - 1.2e-05 25.7 5.6 0.011 16.2 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|119719990|ref|YP_920485.1| - 0.0003 21.1 11.9 0.069 13.5 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|119719990|ref|YP_920485.1| - 0.00036 20.8 17.3 0.0045 17.4 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|119719990|ref|YP_920485.1| - 0.016 15.6 14.5 0.34 11.3 2.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|119719990|ref|YP_920485.1| - 0.045 13.6 4.6 0.064 13.1 3.2 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|119719991|ref|YP_920486.1| - 4.5e-08 32.9 10.5 4.5e-08 32.9 7.3 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q2 PF00420.19 gi|119719992|ref|YP_920487.1| - 3.1e-13 49.1 8.3 3.7e-13 48.8 5.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|119719992|ref|YP_920487.1| - 0.2 11.4 5.7 0.078 12.8 1.5 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) Bax1-I PF01027.15 gi|119719992|ref|YP_920487.1| - 1 8.8 10.7 1.2 8.7 7.4 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Oxidored_q1 PF00361.15 gi|119719993|ref|YP_920488.1| - 1.2e-62 211.6 21.6 1.2e-62 211.6 15.0 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|119719993|ref|YP_920488.1| - 0.16 11.5 5.1 0.058 12.9 0.7 2.3 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|119719994|ref|YP_920489.1| - 2e-51 174.8 16.3 6.6e-49 166.5 10.1 4.0 4 1 0 4 4 4 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|119719994|ref|YP_920489.1| - 1.3e-06 27.8 1.3 6.1e-06 25.7 0.9 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|119719995|ref|YP_920490.1| - 1.5e-39 135.9 6.6 2.5e-39 135.1 4.5 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Gln-synt_C PF00120.19 gi|119719996|ref|YP_920491.1| - 2e-62 210.6 0.0 2.9e-62 210.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|119719996|ref|YP_920491.1| - 2.3e-05 23.8 0.0 5e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain SIS_2 PF13580.1 gi|119719997|ref|YP_920492.1| - 5.5e-41 139.5 0.0 8.1e-41 138.9 0.0 1.2 1 0 0 1 1 1 1 SIS domain DUF2529 PF10740.4 gi|119719997|ref|YP_920492.1| - 8.5e-07 28.5 0.1 0.00016 21.1 0.0 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF2529) SIS PF01380.17 gi|119719997|ref|YP_920492.1| - 8.9e-06 25.3 0.6 0.00033 20.2 0.0 2.3 2 0 0 2 2 2 1 SIS domain cobW PF02492.14 gi|119719997|ref|YP_920492.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PTS-HPr PF00381.14 gi|119719998|ref|YP_920493.1| - 2.8e-30 104.0 0.4 3e-30 103.9 0.2 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site Anthrax_toxA PF03497.11 gi|119719998|ref|YP_920493.1| - 0.083 12.7 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Anthrax toxin LF subunit FeoA PF04023.9 gi|119719998|ref|YP_920493.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 FeoA domain PEP-utilizers_C PF02896.13 gi|119719999|ref|YP_920494.1| - 2.7e-77 259.5 0.0 4e-77 258.9 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.8 gi|119719999|ref|YP_920494.1| - 8e-17 61.1 0.9 8e-17 61.1 0.7 2.2 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.18 gi|119719999|ref|YP_920494.1| - 4.4e-15 55.0 0.8 1.3e-14 53.4 0.1 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|119719999|ref|YP_920494.1| - 2e-05 23.5 0.0 4.1e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Amidohydro_1 PF01979.15 gi|119720000|ref|YP_920495.1| - 1.9e-18 67.2 0.8 3.5e-18 66.3 0.6 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|119720000|ref|YP_920495.1| - 8.4e-16 58.8 10.5 2.3e-15 57.3 7.2 1.7 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|119720000|ref|YP_920495.1| - 1.7e-10 40.5 0.6 4.2e-10 39.2 0.3 1.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|119720000|ref|YP_920495.1| - 2.9e-06 26.7 4.0 0.013 14.7 0.1 2.7 3 0 0 3 3 3 2 Amidohydrolase family SIS PF01380.17 gi|119720001|ref|YP_920496.1| - 1.8e-37 127.8 0.0 2.5e-24 85.3 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|119720001|ref|YP_920496.1| - 1.6e-17 63.6 0.0 4.7e-17 62.1 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|119720001|ref|YP_920496.1| - 3.9e-14 52.1 0.0 3.5e-11 42.4 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|119720001|ref|YP_920496.1| - 6.5e-13 48.5 0.0 1.4e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|119720001|ref|YP_920496.1| - 0.0002 21.0 0.0 0.26 10.9 0.0 2.7 1 1 1 2 2 2 2 SIS domain GATase_4 PF13230.1 gi|119720001|ref|YP_920496.1| - 0.0057 15.3 0.0 0.0097 14.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF1707 PF08044.6 gi|119720001|ref|YP_920496.1| - 0.018 14.7 0.9 1.5 8.6 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Ceramidase_alk PF04734.8 gi|119720002|ref|YP_920497.1| - 9.2e-10 37.0 0.0 3.5e-05 21.8 0.0 2.9 3 0 0 3 3 3 3 Neutral/alkaline non-lysosomal ceramidase GFO_IDH_MocA PF01408.17 gi|119720003|ref|YP_920498.1| - 8.3e-19 68.2 0.0 1.2e-18 67.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|119720003|ref|YP_920498.1| - 6e-10 38.9 0.0 1.3e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|119720003|ref|YP_920498.1| - 0.019 14.4 0.0 0.55 9.6 0.0 2.3 1 1 0 1 1 1 0 Putative oxidoreductase C terminal Semialdhyde_dh PF01118.19 gi|119720003|ref|YP_920498.1| - 0.036 14.3 0.0 0.072 13.3 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|119720003|ref|YP_920498.1| - 0.05 14.0 0.0 0.11 12.8 0.0 1.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PTSIIB_sorb PF03830.10 gi|119720004|ref|YP_920499.1| - 1.8e-36 125.2 0.0 2.2e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 PTS system sorbose subfamily IIB component EIIA-man PF03610.11 gi|119720005|ref|YP_920500.1| - 5.7e-13 48.9 0.4 6.9e-13 48.6 0.3 1.1 1 0 0 1 1 1 1 PTS system fructose IIA component EIID-AGA PF03613.9 gi|119720007|ref|YP_920502.1| - 5.9e-83 277.8 6.9 5.9e-83 277.8 4.8 2.2 2 0 0 2 2 2 1 PTS system mannose/fructose/sorbose family IID component EII-Sor PF03609.9 gi|119720007|ref|YP_920502.1| - 4.2e-69 232.4 25.5 4.2e-69 232.4 17.7 1.9 2 0 0 2 2 2 1 PTS system sorbose-specific iic component Hydrolase_3 PF08282.7 gi|119720008|ref|YP_920503.1| - 1.5e-28 100.0 0.0 8.8e-18 64.7 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|119720008|ref|YP_920503.1| - 3e-11 43.1 0.0 5.9e-10 38.8 0.0 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.11 gi|119720008|ref|YP_920503.1| - 0.00015 20.7 0.0 0.2 10.5 0.0 2.2 2 0 0 2 2 2 2 Trehalose-phosphatase HAD PF12710.2 gi|119720008|ref|YP_920503.1| - 0.00033 20.8 0.0 0.034 14.2 0.0 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pribosyltran PF00156.22 gi|119720009|ref|YP_920504.1| - 8.8e-18 64.2 0.1 1.7e-17 63.3 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|119720009|ref|YP_920504.1| - 0.015 14.5 0.3 0.041 13.0 0.0 1.8 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|119720009|ref|YP_920504.1| - 0.034 13.4 0.0 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Resolvase PF00239.16 gi|119720009|ref|YP_920504.1| - 0.14 12.0 0.2 0.31 10.8 0.1 1.6 1 0 0 1 1 1 0 Resolvase, N terminal domain DUF2754 PF10953.3 gi|119720010|ref|YP_920505.1| - 3.1 7.9 11.3 0.52 10.4 4.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) DUF677 PF05055.7 gi|119720010|ref|YP_920505.1| - 9.1 4.8 8.8 15 4.1 6.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) CbiQ PF02361.11 gi|119720011|ref|YP_920506.1| - 3.8e-22 78.9 15.6 4.9e-22 78.6 10.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|119720012|ref|YP_920507.1| - 8.4e-58 194.5 0.0 7.9e-30 103.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|119720012|ref|YP_920507.1| - 4.8e-21 75.9 0.2 1.1e-05 25.5 0.0 4.1 3 1 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|119720012|ref|YP_920507.1| - 4.8e-09 35.7 0.3 0.011 14.9 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|119720012|ref|YP_920507.1| - 9.2e-09 34.9 4.6 0.00024 20.5 0.3 3.5 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|119720012|ref|YP_920507.1| - 9.4e-08 32.2 1.9 0.11 12.6 0.1 4.1 3 1 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|119720012|ref|YP_920507.1| - 1.9e-07 31.6 0.3 0.00049 20.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|119720012|ref|YP_920507.1| - 5.1e-07 29.1 1.8 0.01 15.3 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|119720012|ref|YP_920507.1| - 6e-07 29.6 2.5 0.01 15.8 0.1 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|119720012|ref|YP_920507.1| - 6.1e-06 25.8 0.5 0.11 11.9 0.0 3.8 4 0 0 4 4 4 2 AAA-like domain AAA_17 PF13207.1 gi|119720012|ref|YP_920507.1| - 1.5e-05 25.7 4.1 0.033 14.9 0.1 2.9 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|119720012|ref|YP_920507.1| - 1.8e-05 24.0 0.0 0.02 14.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|119720012|ref|YP_920507.1| - 2.2e-05 24.2 0.1 0.055 13.3 0.1 3.0 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|119720012|ref|YP_920507.1| - 2.3e-05 24.0 0.6 0.11 12.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|119720012|ref|YP_920507.1| - 2.5e-05 23.9 6.1 0.0022 17.7 0.2 3.1 3 0 0 3 3 2 2 Part of AAA domain AAA_33 PF13671.1 gi|119720012|ref|YP_920507.1| - 5e-05 23.1 0.7 0.047 13.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|119720012|ref|YP_920507.1| - 5.3e-05 22.9 0.4 0.041 13.5 0.0 2.7 2 0 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|119720012|ref|YP_920507.1| - 7.6e-05 22.9 1.6 0.0081 16.3 0.0 3.3 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|119720012|ref|YP_920507.1| - 0.00012 21.7 1.8 0.032 13.8 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|119720012|ref|YP_920507.1| - 0.00016 21.9 6.2 0.34 11.2 0.1 3.4 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.10 gi|119720012|ref|YP_920507.1| - 0.00021 21.0 0.8 0.53 9.9 0.1 3.2 3 0 0 3 3 3 1 NTPase T2SE PF00437.15 gi|119720012|ref|YP_920507.1| - 0.0007 18.5 0.1 0.53 9.1 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein DUF258 PF03193.11 gi|119720012|ref|YP_920507.1| - 0.00072 18.7 0.7 0.85 8.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 MobB PF03205.9 gi|119720012|ref|YP_920507.1| - 0.00092 18.9 0.4 0.7 9.6 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B KaiC PF06745.8 gi|119720012|ref|YP_920507.1| - 0.0012 18.0 1.9 0.33 10.0 0.1 2.9 3 0 0 3 3 3 1 KaiC SRP54 PF00448.17 gi|119720012|ref|YP_920507.1| - 0.0023 17.3 0.1 0.22 10.9 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|119720012|ref|YP_920507.1| - 0.0024 16.7 2.0 0.33 9.7 0.1 2.2 2 0 0 2 2 2 1 NB-ARC domain cobW PF02492.14 gi|119720012|ref|YP_920507.1| - 0.0025 17.2 2.3 0.55 9.6 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|119720012|ref|YP_920507.1| - 0.0033 17.3 1.3 1.8 8.4 0.0 2.7 3 0 0 3 3 2 1 AAA domain RuvB_N PF05496.7 gi|119720012|ref|YP_920507.1| - 0.0062 15.6 0.4 0.016 14.2 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|119720012|ref|YP_920507.1| - 0.01 15.2 3.9 1.6 8.0 0.0 3.6 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|119720012|ref|YP_920507.1| - 0.011 15.4 1.1 0.31 10.7 0.1 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|119720012|ref|YP_920507.1| - 0.011 15.2 0.6 1.5 8.2 0.0 2.8 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.1 gi|119720012|ref|YP_920507.1| - 0.024 13.1 0.0 0.099 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|119720012|ref|YP_920507.1| - 0.026 14.1 0.6 3 7.4 0.1 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase PduV-EutP PF10662.4 gi|119720012|ref|YP_920507.1| - 0.031 13.7 1.1 0.57 9.6 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Arch_ATPase PF01637.13 gi|119720012|ref|YP_920507.1| - 0.034 13.8 0.6 1.4 8.5 0.0 2.6 3 0 0 3 3 3 0 Archaeal ATPase AAA_28 PF13521.1 gi|119720012|ref|YP_920507.1| - 0.035 14.0 3.9 0.62 9.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.10 gi|119720012|ref|YP_920507.1| - 0.041 12.7 0.1 2.7 6.8 0.0 2.3 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain ATP_bind_1 PF03029.12 gi|119720012|ref|YP_920507.1| - 0.057 12.9 0.5 14 5.0 0.1 2.7 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein PhoH PF02562.11 gi|119720012|ref|YP_920507.1| - 0.064 12.4 1.2 1 8.5 0.1 2.7 3 0 0 3 3 3 0 PhoH-like protein MMR_HSR1 PF01926.18 gi|119720012|ref|YP_920507.1| - 0.075 13.0 0.2 22 5.0 0.0 3.3 4 0 0 4 4 3 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|119720012|ref|YP_920507.1| - 0.092 12.9 0.3 2.3 8.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase RecA PF00154.16 gi|119720012|ref|YP_920507.1| - 0.099 11.6 1.3 3.6 6.5 0.0 2.5 3 0 0 3 3 2 0 recA bacterial DNA recombination protein Gtr1_RagA PF04670.7 gi|119720012|ref|YP_920507.1| - 0.13 11.3 0.8 0.22 10.6 0.0 1.7 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region PIF1 PF05970.9 gi|119720012|ref|YP_920507.1| - 0.17 10.8 0.2 14 4.5 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Pox_A32 PF04665.7 gi|119720012|ref|YP_920507.1| - 0.17 11.1 0.7 2.6 7.2 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein PRK PF00485.13 gi|119720012|ref|YP_920507.1| - 0.19 11.2 0.5 3.3 7.2 0.1 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.7 gi|119720012|ref|YP_920507.1| - 0.21 10.6 1.0 3.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin Miro PF08477.8 gi|119720012|ref|YP_920507.1| - 0.21 12.0 1.5 35 4.9 0.1 3.0 3 0 0 3 3 3 0 Miro-like protein AAA_24 PF13479.1 gi|119720012|ref|YP_920507.1| - 0.22 11.1 3.2 2.5 7.6 0.1 2.4 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|119720012|ref|YP_920507.1| - 0.22 11.3 1.9 15 5.3 0.1 2.7 3 0 0 3 3 2 0 Domain of unknown function DUF87 BCA_ABC_TP_C PF12399.3 gi|119720012|ref|YP_920507.1| - 0.94 9.2 6.1 0.3 10.8 0.2 3.0 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter GATase PF00117.23 gi|119720013|ref|YP_920508.1| - 2.6e-07 30.2 0.0 9.1e-07 28.5 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|119720013|ref|YP_920508.1| - 0.0027 17.3 0.1 0.87 9.1 0.0 2.1 1 1 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|119720013|ref|YP_920508.1| - 0.023 14.1 0.1 0.074 12.4 0.1 1.9 1 1 0 1 1 1 0 Peptidase C26 DUF2273 PF10031.4 gi|119720013|ref|YP_920508.1| - 0.089 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) ATP_bind_4 PF01902.12 gi|119720014|ref|YP_920509.1| - 9.6e-72 240.8 0.1 1.1e-71 240.7 0.1 1.0 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|119720014|ref|YP_920509.1| - 0.0028 17.1 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|119720014|ref|YP_920509.1| - 0.1 11.8 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Pribosyltran PF00156.22 gi|119720015|ref|YP_920510.1| - 5.1e-05 23.0 0.1 0.00012 21.8 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|119720015|ref|YP_920510.1| - 0.0021 17.2 0.0 0.0032 16.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF4209 PF13910.1 gi|119720015|ref|YP_920510.1| - 0.035 14.1 0.0 0.068 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4209) MFS_1 PF07690.11 gi|119720016|ref|YP_920511.1| - 2.6e-52 177.6 41.1 1.2e-39 136.0 14.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|119720016|ref|YP_920511.1| - 0.00038 18.9 28.3 0.016 13.6 13.0 3.5 2 1 0 2 2 2 2 MFS/sugar transport protein Flavi_NS4A PF01350.12 gi|119720016|ref|YP_920511.1| - 0.036 13.6 0.9 0.12 11.8 0.6 1.9 1 0 0 1 1 1 0 Flavivirus non-structural protein NS4A OATP PF03137.15 gi|119720016|ref|YP_920511.1| - 0.36 8.8 7.0 0.034 12.2 0.3 2.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.2 gi|119720016|ref|YP_920511.1| - 0.79 9.5 20.6 0.79 9.5 0.1 5.7 3 1 3 6 6 6 0 MFS_1 like family Glyco_hydro_1 PF00232.13 gi|119720017|ref|YP_920512.1| - 6.6e-61 205.8 0.0 5.3e-47 160.0 0.0 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|119720017|ref|YP_920512.1| - 4.2e-06 26.1 0.0 2.9e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) DUF2420 PF10336.4 gi|119720017|ref|YP_920512.1| - 0.16 11.5 0.0 0.4 10.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) HTH_24 PF13412.1 gi|119720018|ref|YP_920513.1| - 2.7e-05 23.4 0.0 4.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|119720018|ref|YP_920513.1| - 0.0013 18.3 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|119720018|ref|YP_920513.1| - 0.0028 17.2 0.0 0.0071 15.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|119720018|ref|YP_920513.1| - 0.026 14.0 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GalP_UDP_transf PF01087.17 gi|119720019|ref|YP_920514.1| - 8.5e-29 100.9 0.0 1.4e-28 100.1 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|119720019|ref|YP_920514.1| - 4.2e-14 52.4 0.0 6.6e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.18 gi|119720019|ref|YP_920514.1| - 0.0044 17.5 0.0 0.011 16.2 0.0 1.7 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|119720019|ref|YP_920514.1| - 0.018 15.2 0.0 0.031 14.4 0.0 1.3 1 0 0 1 1 1 0 Scavenger mRNA decapping enzyme C-term binding DUF360 PF04020.8 gi|119720020|ref|YP_920515.1| - 6.3e-05 23.2 13.2 0.00017 21.8 3.9 2.0 1 1 1 2 2 2 2 Membrane protein of unknown function SyrA PF11089.3 gi|119720020|ref|YP_920515.1| - 0.17 11.6 4.1 0.69 9.7 0.0 2.6 2 0 0 2 2 2 0 Exopolysaccharide production repressor GHMP_kinases_N PF00288.21 gi|119720021|ref|YP_920516.1| - 8.4e-19 67.4 0.3 4.2e-18 65.1 0.1 2.3 3 0 0 3 3 3 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.4 gi|119720021|ref|YP_920516.1| - 1.9e-11 43.0 0.1 3.1e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.8 gi|119720021|ref|YP_920516.1| - 1.2e-09 38.2 0.1 3.3e-09 36.7 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal NOSIC PF08060.8 gi|119720021|ref|YP_920516.1| - 0.12 12.1 0.1 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 NOSIC (NUC001) domain DUF3940 PF13076.1 gi|119720021|ref|YP_920516.1| - 0.64 9.6 3.5 0.42 10.2 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3940) DUF498 PF04430.9 gi|119720022|ref|YP_920517.1| - 2.5e-24 84.9 0.0 2.8e-24 84.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) TPR_12 PF13424.1 gi|119720023|ref|YP_920518.1| - 6.8e-06 25.9 0.7 3.1e-05 23.8 0.5 2.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|119720023|ref|YP_920518.1| - 0.0025 17.4 2.2 0.005 16.4 0.4 2.4 2 0 0 2 2 2 1 TPR repeat TPR_2 PF07719.12 gi|119720023|ref|YP_920518.1| - 0.0078 16.0 2.9 0.096 12.6 0.6 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|119720023|ref|YP_920518.1| - 0.076 13.3 1.1 0.42 10.9 0.6 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|119720023|ref|YP_920518.1| - 0.091 12.9 1.6 4.3 7.5 0.0 3.6 5 0 0 5 5 4 0 Anaphase-promoting complex, cyclosome, subunit 3 AAA_5 PF07728.9 gi|119720023|ref|YP_920518.1| - 0.11 12.1 0.1 14 5.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TPR_8 PF13181.1 gi|119720023|ref|YP_920518.1| - 0.17 11.7 1.1 13 5.7 0.1 3.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|119720023|ref|YP_920518.1| - 0.17 12.6 8.8 0.2 12.3 2.2 3.8 2 1 2 4 4 4 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|119720023|ref|YP_920518.1| - 0.17 11.7 2.6 0.52 10.2 1.0 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|119720023|ref|YP_920518.1| - 0.67 10.7 5.2 4 8.3 1.2 4.1 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|119720023|ref|YP_920518.1| - 1.3 9.0 7.2 0.33 10.9 1.7 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Metallophos_2 PF12850.2 gi|119720024|ref|YP_920519.1| - 5.6e-17 62.0 0.0 1.5e-16 60.5 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|119720024|ref|YP_920519.1| - 1.1e-06 28.2 0.3 0.0002 20.8 0.2 2.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Cation_efflux PF01545.16 gi|119720025|ref|YP_920520.1| - 1.1e-49 169.1 5.4 1.2e-49 168.9 3.7 1.0 1 0 0 1 1 1 1 Cation efflux family AMP-binding_C_2 PF14535.1 gi|119720025|ref|YP_920520.1| - 0.0074 16.3 1.1 0.014 15.4 0.8 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Beta_elim_lyase PF01212.16 gi|119720025|ref|YP_920520.1| - 0.018 14.1 0.1 0.029 13.5 0.1 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase DUF3176 PF11374.3 gi|119720025|ref|YP_920520.1| - 0.12 12.2 1.0 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3176) Spore_YhcN_YlaJ PF09580.5 gi|119720025|ref|YP_920520.1| - 2 8.5 4.4 3.1 7.8 3.0 1.3 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Tropomyosin_1 PF12718.2 gi|119720026|ref|YP_920521.1| - 0.00039 20.2 6.2 0.00039 20.2 4.3 2.4 2 1 0 2 2 2 1 Tropomyosin like DUF1664 PF07889.7 gi|119720026|ref|YP_920521.1| - 0.0012 18.6 5.3 0.034 13.9 1.3 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF1664) Apolipoprotein PF01442.13 gi|119720026|ref|YP_920521.1| - 0.03 13.8 5.9 0.36 10.3 4.0 2.3 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Fmp27_WPPW PF10359.4 gi|119720026|ref|YP_920521.1| - 0.27 9.6 5.1 0.17 10.2 1.5 1.8 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Atg14 PF10186.4 gi|119720026|ref|YP_920521.1| - 0.49 9.2 4.1 0.82 8.5 2.9 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|119720026|ref|YP_920521.1| - 0.65 9.7 15.2 0.028 14.1 3.0 2.9 3 1 1 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|119720026|ref|YP_920521.1| - 1.9 8.5 13.7 0.76 9.8 6.1 2.6 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain PspA_IM30 PF04012.7 gi|119720026|ref|YP_920521.1| - 2.2 7.5 17.5 1.4 8.2 3.6 2.5 2 1 0 2 2 2 0 PspA/IM30 family HAUS-augmin3 PF14932.1 gi|119720026|ref|YP_920521.1| - 3 6.9 10.9 0.56 9.3 2.4 2.3 2 1 0 2 2 2 0 HAUS augmin-like complex subunit 3 Spc7 PF08317.6 gi|119720026|ref|YP_920521.1| - 3.9 6.0 13.7 0.78 8.3 6.5 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|119720026|ref|YP_920521.1| - 6.1 7.2 14.3 0.54 10.6 4.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF972) WD40_alt PF14077.1 gi|119720026|ref|YP_920521.1| - 7.2 6.3 10.6 0.91 9.2 0.1 3.9 5 0 0 5 5 5 0 Alternative WD40 repeat motif AATF-Che1 PF13339.1 gi|119720026|ref|YP_920521.1| - 8 6.6 8.9 1.3 9.2 1.5 2.8 3 1 0 3 3 3 0 Apoptosis antagonizing transcription factor Molybdopterin PF00384.17 gi|119720027|ref|YP_920522.1| - 2.2e-53 181.5 0.0 4.1e-53 180.6 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|119720027|ref|YP_920522.1| - 2.8e-17 62.5 0.0 8.2e-17 61.0 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|119720027|ref|YP_920522.1| - 2e-07 30.7 0.1 3.4e-07 29.9 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain HTH_23 PF13384.1 gi|119720027|ref|YP_920522.1| - 0.087 12.5 0.0 0.31 10.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain CDC48_N PF02359.13 gi|119720027|ref|YP_920522.1| - 0.096 12.6 0.0 0.32 10.9 0.0 1.8 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.1 gi|119720028|ref|YP_920523.1| - 4.1e-24 84.3 12.8 1.4e-23 82.5 5.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119720028|ref|YP_920523.1| - 7.5e-18 64.6 25.3 2e-10 40.8 5.9 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119720028|ref|YP_920523.1| - 3.7e-16 58.1 34.3 2e-07 30.5 1.0 4.5 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|119720028|ref|YP_920523.1| - 5.5e-15 54.2 37.7 2.1e-08 33.3 1.6 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|119720028|ref|YP_920523.1| - 6.7e-15 54.0 31.3 6.6e-07 28.8 0.9 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119720028|ref|YP_920523.1| - 1.2e-13 51.0 24.9 3.4e-07 30.4 5.1 3.0 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119720028|ref|YP_920523.1| - 2.8e-12 46.2 28.7 1.6e-05 24.6 6.4 3.8 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119720028|ref|YP_920523.1| - 1.2e-09 37.6 33.3 0.00061 19.9 1.8 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|119720028|ref|YP_920523.1| - 6.9e-08 32.4 25.0 8e-06 25.7 4.2 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|119720028|ref|YP_920523.1| - 5.7e-07 29.6 46.2 0.049 14.1 3.0 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|119720028|ref|YP_920523.1| - 3.6e-06 27.2 24.5 0.016 15.5 2.9 4.0 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119720028|ref|YP_920523.1| - 4.3e-05 24.1 26.7 0.061 14.0 7.7 3.9 1 1 3 5 5 5 4 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|119720028|ref|YP_920523.1| - 6.4e-05 23.4 6.1 0.0076 16.8 0.4 3.9 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|119720028|ref|YP_920523.1| - 7.9e-05 22.4 32.5 0.031 14.1 8.7 3.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119720028|ref|YP_920523.1| - 0.0002 21.6 28.7 0.058 13.8 1.2 4.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain DUF866 PF05907.8 gi|119720028|ref|YP_920523.1| - 0.12 11.8 0.4 0.17 11.3 0.3 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Fer4_19 PF06902.6 gi|119720028|ref|YP_920523.1| - 7.1 6.5 16.9 1.5 8.7 0.1 4.0 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster NrfD PF03916.9 gi|119720029|ref|YP_920524.1| - 2.3e-21 76.5 31.5 2.8e-21 76.2 21.8 1.1 1 0 0 1 1 1 1 Polysulphide reductase, NrfD NADH_oxidored PF08040.6 gi|119720029|ref|YP_920524.1| - 0.18 11.4 0.7 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 MNLL subunit WTF PF03303.8 gi|119720029|ref|YP_920524.1| - 0.4 10.0 4.6 0.62 9.4 3.2 1.4 1 0 0 1 1 1 0 WTF protein Sdh_cyt PF01127.17 gi|119720030|ref|YP_920525.1| - 1.4e-12 47.5 4.2 1.7e-12 47.2 2.9 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_C PF02300.12 gi|119720030|ref|YP_920525.1| - 0.029 14.2 1.6 0.037 13.8 1.1 1.3 1 1 0 1 1 1 0 Fumarate reductase subunit C Fumarate_red_D PF02313.12 gi|119720030|ref|YP_920525.1| - 0.91 9.4 5.0 1.2 9.0 3.5 1.1 1 0 0 1 1 1 0 Fumarate reductase subunit D Sdh_cyt PF01127.17 gi|119720031|ref|YP_920526.1| - 1.2e-08 34.7 7.9 1.5e-08 34.5 5.5 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_C PF02300.12 gi|119720031|ref|YP_920526.1| - 0.018 14.9 2.9 0.03 14.1 2.0 1.5 1 1 0 1 1 1 0 Fumarate reductase subunit C Ferric_reduct PF01794.14 gi|119720031|ref|YP_920526.1| - 0.075 13.1 5.7 0.15 12.1 3.9 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component UPF0114 PF03350.11 gi|119720031|ref|YP_920526.1| - 0.76 9.6 5.2 0.79 9.6 2.5 1.8 1 1 1 2 2 2 0 Uncharacterized protein family, UPF0114 Fer2_3 PF13085.1 gi|119720032|ref|YP_920527.1| - 1.5e-29 102.0 0.0 2.2e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|119720032|ref|YP_920527.1| - 9.1e-11 41.6 3.0 1.3e-10 41.1 0.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119720032|ref|YP_920527.1| - 7.2e-08 32.6 8.8 1.3e-05 25.4 1.5 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.22 gi|119720032|ref|YP_920527.1| - 8e-06 25.5 0.5 8e-06 25.5 0.3 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.1 gi|119720032|ref|YP_920527.1| - 1.8e-05 25.0 2.3 0.0015 18.9 0.0 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119720032|ref|YP_920527.1| - 0.00012 22.2 12.5 0.00036 20.7 2.3 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119720032|ref|YP_920527.1| - 0.00065 20.0 3.1 0.00065 20.0 2.2 2.5 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119720032|ref|YP_920527.1| - 0.0014 18.8 1.2 0.0014 18.8 0.8 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119720032|ref|YP_920527.1| - 0.0038 16.9 4.0 0.0038 16.9 2.7 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119720032|ref|YP_920527.1| - 0.0054 16.5 1.8 0.0054 16.5 1.2 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|119720032|ref|YP_920527.1| - 0.0074 15.9 0.2 0.97 9.0 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|119720032|ref|YP_920527.1| - 0.015 14.8 5.0 0.015 14.8 3.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|119720032|ref|YP_920527.1| - 0.035 13.9 0.9 0.035 13.9 0.6 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer2_4 PF13510.1 gi|119720032|ref|YP_920527.1| - 0.046 13.5 0.5 0.13 12.0 0.4 1.7 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DAO PF01266.19 gi|119720033|ref|YP_920528.1| - 7.8e-58 196.0 0.5 9.4e-58 195.8 0.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|119720033|ref|YP_920528.1| - 6.5e-12 45.1 0.0 8.6e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|119720033|ref|YP_920528.1| - 7.7e-08 31.5 2.9 0.0012 17.7 1.5 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|119720033|ref|YP_920528.1| - 9.8e-07 28.1 2.1 4.6e-06 25.9 1.5 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|119720033|ref|YP_920528.1| - 2.5e-06 27.5 0.8 0.0001 22.2 0.5 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|119720033|ref|YP_920528.1| - 2.5e-05 24.2 3.2 3.7e-05 23.6 1.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|119720033|ref|YP_920528.1| - 7.5e-05 23.0 1.6 0.00035 20.9 0.7 2.4 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|119720033|ref|YP_920528.1| - 0.0013 17.4 1.6 0.75 8.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase 3HCDH_N PF02737.13 gi|119720033|ref|YP_920528.1| - 0.004 16.8 0.7 0.0084 15.7 0.5 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|119720033|ref|YP_920528.1| - 0.0058 15.1 0.5 0.029 12.8 0.4 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|119720033|ref|YP_920528.1| - 0.0087 15.1 0.7 0.015 14.3 0.5 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|119720033|ref|YP_920528.1| - 0.013 14.3 1.2 0.022 13.6 0.7 1.4 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|119720033|ref|YP_920528.1| - 0.028 14.6 0.0 0.064 13.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|119720033|ref|YP_920528.1| - 0.056 13.5 0.2 0.56 10.2 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|119720033|ref|YP_920528.1| - 0.075 11.9 0.7 0.14 11.0 0.5 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|119720033|ref|YP_920528.1| - 0.092 11.6 0.0 3.9 6.2 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_Gly3P_dh_N PF01210.18 gi|119720033|ref|YP_920528.1| - 0.19 11.4 0.4 0.35 10.5 0.3 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|119720033|ref|YP_920528.1| - 0.95 8.8 4.3 0.19 11.1 0.3 1.8 2 0 0 2 2 1 0 Ketopantoate reductase PanE/ApbA FGGY_N PF00370.16 gi|119720034|ref|YP_920529.1| - 4.4e-70 235.7 0.0 5.7e-70 235.4 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|119720034|ref|YP_920529.1| - 3.1e-59 199.9 0.3 2.3e-57 193.8 0.2 2.2 2 0 0 2 2 2 2 FGGY family of carbohydrate kinases, C-terminal domain Thioredoxin PF00085.15 gi|119720035|ref|YP_920530.1| - 6.8e-25 86.7 0.0 9.1e-25 86.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|119720035|ref|YP_920530.1| - 1.5e-08 34.6 0.0 1.6e-05 24.9 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|119720035|ref|YP_920530.1| - 7e-08 32.6 0.1 2.8e-07 30.7 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|119720035|ref|YP_920530.1| - 0.00026 20.7 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|119720035|ref|YP_920530.1| - 0.00038 20.0 0.0 0.00053 19.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|119720035|ref|YP_920530.1| - 0.001 18.6 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_7 PF13899.1 gi|119720035|ref|YP_920530.1| - 0.0017 18.3 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|119720035|ref|YP_920530.1| - 0.023 14.3 0.1 0.043 13.5 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family KaiB PF07689.7 gi|119720035|ref|YP_920530.1| - 0.035 13.5 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 KaiB domain DUF953 PF06110.6 gi|119720035|ref|YP_920530.1| - 0.037 13.4 0.1 0.18 11.2 0.0 2.0 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF953) TrbC_Ftype PF09673.5 gi|119720035|ref|YP_920530.1| - 0.074 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein AAA_14 PF13173.1 gi|119720036|ref|YP_920531.1| - 3.1e-07 30.3 0.0 5.9e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|119720036|ref|YP_920531.1| - 0.0002 21.4 0.1 0.69 10.0 0.0 2.7 1 1 1 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|119720036|ref|YP_920531.1| - 0.0016 18.1 0.0 0.0041 16.8 0.0 1.8 1 0 0 1 1 1 1 Archaeal ATPase DEAD PF00270.24 gi|119720036|ref|YP_920531.1| - 0.04 13.4 0.0 0.15 11.5 0.0 2.0 2 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|119720036|ref|YP_920531.1| - 0.094 12.6 0.0 12 5.8 0.0 2.4 1 1 1 2 2 2 0 AAA ATPase domain HEPN PF05168.9 gi|119720037|ref|YP_920532.1| - 1e-32 112.4 1.2 1.2e-32 112.3 0.8 1.0 1 0 0 1 1 1 1 HEPN domain RC-P840_PscD PF10657.4 gi|119720037|ref|YP_920532.1| - 0.094 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD NTP_transf_2 PF01909.18 gi|119720038|ref|YP_920533.1| - 2.2e-12 47.1 0.1 2.9e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|119720038|ref|YP_920533.1| - 0.018 14.6 0.3 0.11 12.1 0.2 2.0 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MdcG PF10620.4 gi|119720038|ref|YP_920533.1| - 0.032 13.7 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF448 PF04296.8 gi|119720038|ref|YP_920533.1| - 0.059 13.0 0.0 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF448) DNA_pol3_delta PF06144.8 gi|119720038|ref|YP_920533.1| - 0.078 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DUF3150 PF11348.3 gi|119720038|ref|YP_920533.1| - 0.13 11.2 0.1 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) HAD_2 PF13419.1 gi|119720039|ref|YP_920534.1| - 1.4e-16 61.1 0.0 2e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|119720039|ref|YP_920534.1| - 2.8e-05 24.6 0.3 0.0059 17.0 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|119720039|ref|YP_920534.1| - 0.0021 17.6 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like PA PF02225.17 gi|119720039|ref|YP_920534.1| - 0.023 14.3 0.0 0.17 11.5 0.0 2.2 1 1 0 1 1 1 0 PA domain Hydrolase_6 PF13344.1 gi|119720039|ref|YP_920534.1| - 0.036 13.9 0.0 6.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|119720039|ref|YP_920534.1| - 0.04 13.2 0.0 0.31 10.3 0.0 2.0 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Acid_PPase PF12689.2 gi|119720039|ref|YP_920534.1| - 0.088 12.4 0.1 0.76 9.3 0.1 2.2 1 1 0 1 1 1 0 Acid Phosphatase HAD PF12710.2 gi|119720039|ref|YP_920534.1| - 0.1 12.7 0.1 0.15 12.2 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF340 PF03956.8 gi|119720040|ref|YP_920535.1| - 1e-45 155.4 14.0 1e-45 155.4 9.7 2.0 2 0 0 2 2 2 1 Membrane protein of unknown function (DUF340) MFS_1 PF07690.11 gi|119720041|ref|YP_920536.1| - 3.2e-12 45.8 47.2 9.7e-10 37.6 26.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|119720041|ref|YP_920536.1| - 0.001 18.7 0.4 0.0031 17.2 0.3 1.9 1 0 0 1 1 1 1 MFS_1 like family ABC_tran PF00005.22 gi|119720042|ref|YP_920537.1| - 6.9e-29 100.8 0.0 1.3e-28 100.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720042|ref|YP_920537.1| - 2e-17 64.0 0.3 3.6e-15 56.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|119720042|ref|YP_920537.1| - 3.8e-06 27.3 0.0 6.9e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|119720042|ref|YP_920537.1| - 2.3e-05 23.8 0.3 4.5e-05 22.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|119720042|ref|YP_920537.1| - 5.5e-05 22.3 0.0 0.0069 15.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|119720042|ref|YP_920537.1| - 0.0007 20.4 0.2 0.0019 18.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720042|ref|YP_920537.1| - 0.001 18.3 0.0 0.39 9.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ArgK PF03308.11 gi|119720042|ref|YP_920537.1| - 0.0036 16.1 0.2 0.012 14.4 0.0 1.8 2 0 0 2 2 2 1 ArgK protein AAA_19 PF13245.1 gi|119720042|ref|YP_920537.1| - 0.0044 16.7 0.7 0.064 13.0 0.0 2.9 2 1 0 2 2 2 1 Part of AAA domain AAA_10 PF12846.2 gi|119720042|ref|YP_920537.1| - 0.0055 16.1 0.1 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain Rad17 PF03215.10 gi|119720042|ref|YP_920537.1| - 0.0057 15.4 0.0 0.0084 14.8 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|119720042|ref|YP_920537.1| - 0.0094 15.9 0.8 0.09 12.7 0.3 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|119720042|ref|YP_920537.1| - 0.011 15.8 0.0 0.065 13.4 0.0 2.3 1 1 1 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|119720042|ref|YP_920537.1| - 0.014 15.7 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|119720042|ref|YP_920537.1| - 0.027 14.6 0.1 0.4 10.8 0.0 2.5 1 1 1 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|119720042|ref|YP_920537.1| - 0.032 12.7 0.0 0.44 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|119720042|ref|YP_920537.1| - 0.035 13.9 0.1 0.087 12.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|119720042|ref|YP_920537.1| - 0.036 13.2 0.1 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|119720042|ref|YP_920537.1| - 0.051 13.2 0.1 0.67 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|119720042|ref|YP_920537.1| - 0.058 12.9 0.2 3.8 7.0 0.0 2.5 2 1 1 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|119720042|ref|YP_920537.1| - 0.065 13.5 0.1 0.17 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|119720042|ref|YP_920537.1| - 0.077 12.1 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|119720042|ref|YP_920537.1| - 0.1 12.1 0.1 0.65 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|119720042|ref|YP_920537.1| - 0.1 12.2 0.1 0.45 10.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.1 gi|119720042|ref|YP_920537.1| - 0.1 12.4 0.0 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|119720042|ref|YP_920537.1| - 0.12 11.8 0.3 0.48 9.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.6 gi|119720042|ref|YP_920537.1| - 0.13 10.9 0.1 0.25 9.9 0.0 1.5 2 0 0 2 2 2 0 PrkA AAA domain RNA_helicase PF00910.17 gi|119720042|ref|YP_920537.1| - 0.15 12.2 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|119720042|ref|YP_920537.1| - 0.16 11.9 0.3 0.42 10.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain ABC2_membrane PF01061.19 gi|119720043|ref|YP_920538.1| - 7e-10 38.4 5.7 1.7e-09 37.1 3.9 1.6 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|119720043|ref|YP_920538.1| - 0.65 8.9 10.0 1.2 8.1 6.8 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Glu_synthase PF01645.12 gi|119720045|ref|YP_920540.1| - 7e-24 84.4 2.6 1.9e-23 83.0 1.3 2.0 1 1 1 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|119720045|ref|YP_920540.1| - 1.6e-19 70.0 4.2 4.2e-13 48.8 1.4 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|119720045|ref|YP_920540.1| - 0.0079 15.3 1.4 0.012 14.7 1.0 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase tRNA-synt_2 PF00152.15 gi|119720046|ref|YP_920541.1| - 1.3e-53 181.9 0.0 2.2e-53 181.2 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) BAR_3_WASP_bdg PF10456.4 gi|119720046|ref|YP_920541.1| - 0.082 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 WASP-binding domain of Sorting nexin protein Flavin_Reduct PF01613.13 gi|119720047|ref|YP_920542.1| - 7.8e-29 100.5 0.0 9.4e-29 100.2 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Laminin_I PF06008.9 gi|119720048|ref|YP_920543.1| - 0.095 12.0 0.2 0.1 11.8 0.1 1.0 1 0 0 1 1 1 0 Laminin Domain I KaiC PF06745.8 gi|119720050|ref|YP_920545.1| - 4.2e-52 176.5 0.0 4.9e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|119720050|ref|YP_920545.1| - 1.8e-11 43.8 0.8 2.7e-11 43.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain RecA PF00154.16 gi|119720050|ref|YP_920545.1| - 4.3e-05 22.7 0.1 6.2e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|119720050|ref|YP_920545.1| - 0.0022 17.4 0.1 0.0055 16.1 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein Rad51 PF08423.6 gi|119720050|ref|YP_920545.1| - 0.003 16.5 0.0 0.0042 16.0 0.0 1.4 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.1 gi|119720050|ref|YP_920545.1| - 0.0041 17.2 0.1 0.016 15.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain MEDS PF14417.1 gi|119720050|ref|YP_920545.1| - 0.0054 15.8 0.0 0.0075 15.3 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.6 gi|119720050|ref|YP_920545.1| - 0.015 13.6 0.0 0.078 11.2 0.0 2.1 1 1 1 2 2 2 0 GvpD gas vesicle protein AAA_19 PF13245.1 gi|119720050|ref|YP_920545.1| - 0.028 14.1 0.0 0.097 12.4 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|119720050|ref|YP_920545.1| - 0.031 14.4 0.0 0.062 13.5 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|119720050|ref|YP_920545.1| - 0.039 12.8 0.2 0.12 11.2 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain PAXNEB PF05625.6 gi|119720050|ref|YP_920545.1| - 0.12 11.2 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein SRP54 PF00448.17 gi|119720050|ref|YP_920545.1| - 0.19 11.1 0.7 3.4 7.0 0.1 2.1 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|119720050|ref|YP_920545.1| - 4.6 7.1 5.5 0.94 9.3 0.6 2.3 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|119720050|ref|YP_920545.1| - 6 7.7 7.2 1.9e+02 2.8 5.0 3.0 1 1 0 1 1 1 0 AAA domain HAD_2 PF13419.1 gi|119720052|ref|YP_920547.1| - 3.8e-21 76.0 0.0 4.6e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|119720052|ref|YP_920547.1| - 5.9e-06 26.8 0.0 3e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|119720052|ref|YP_920547.1| - 1.7e-05 24.4 0.0 2.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like OMPdecase PF00215.19 gi|119720053|ref|YP_920548.1| - 8.8e-19 67.7 0.0 1.2e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.22 gi|119720054|ref|YP_920549.1| - 1.2e-20 73.4 2.7 3.4e-20 72.0 1.9 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|119720054|ref|YP_920549.1| - 6.7e-05 22.2 0.3 0.00088 18.6 0.2 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|119720054|ref|YP_920549.1| - 0.00026 20.2 0.0 0.00031 20.0 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase ABC_tran PF00005.22 gi|119720055|ref|YP_920550.1| - 6.1e-34 117.2 0.0 9.2e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720055|ref|YP_920550.1| - 9.3e-12 45.4 0.1 6.3e-05 23.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119720055|ref|YP_920550.1| - 0.00013 22.0 0.1 0.00031 20.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|119720055|ref|YP_920550.1| - 0.00031 20.0 0.1 0.16 11.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|119720055|ref|YP_920550.1| - 0.00043 19.7 0.0 0.0009 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|119720055|ref|YP_920550.1| - 0.0015 17.6 0.0 0.46 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|119720055|ref|YP_920550.1| - 0.0022 18.3 0.0 0.004 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|119720055|ref|YP_920550.1| - 0.0024 17.0 0.0 0.004 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 TOBE_2 PF08402.5 gi|119720055|ref|YP_920550.1| - 0.0036 17.2 0.6 0.015 15.2 0.4 2.1 1 0 0 1 1 1 1 TOBE domain AAA_22 PF13401.1 gi|119720055|ref|YP_920550.1| - 0.0044 17.1 0.0 0.027 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|119720055|ref|YP_920550.1| - 0.0078 15.9 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain TOBE PF03459.12 gi|119720055|ref|YP_920550.1| - 0.012 15.7 0.4 8.7 6.5 0.2 3.2 3 0 0 3 3 3 0 TOBE domain AAA_10 PF12846.2 gi|119720055|ref|YP_920550.1| - 0.015 14.7 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|119720055|ref|YP_920550.1| - 0.025 14.8 0.0 0.04 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119720055|ref|YP_920550.1| - 0.039 13.8 0.1 0.078 12.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|119720055|ref|YP_920550.1| - 0.04 13.6 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|119720055|ref|YP_920550.1| - 0.042 14.6 0.3 0.11 13.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|119720055|ref|YP_920550.1| - 0.042 13.2 0.0 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|119720055|ref|YP_920550.1| - 0.046 13.2 0.0 0.09 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|119720055|ref|YP_920550.1| - 0.06 13.2 0.0 0.31 10.9 0.0 2.1 3 0 0 3 3 3 0 AAA domain Miro PF08477.8 gi|119720055|ref|YP_920550.1| - 0.061 13.8 0.0 0.29 11.6 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein NACHT PF05729.7 gi|119720055|ref|YP_920550.1| - 0.079 12.6 0.0 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.9 gi|119720055|ref|YP_920550.1| - 0.099 12.3 0.1 0.31 10.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|119720055|ref|YP_920550.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF1359 PF07097.6 gi|119720055|ref|YP_920550.1| - 0.13 12.3 0.1 0.32 11.0 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF1359) BPD_transp_1 PF00528.17 gi|119720056|ref|YP_920551.1| - 1.3e-11 44.3 13.9 1.3e-11 44.3 9.6 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720057|ref|YP_920552.1| - 1.2e-17 64.0 14.5 1.2e-17 64.0 10.0 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|119720058|ref|YP_920553.1| - 6.4e-36 124.6 15.7 7.7e-36 124.4 10.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|119720058|ref|YP_920553.1| - 2.9e-31 109.2 6.1 3.6e-31 108.9 4.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119720058|ref|YP_920553.1| - 8.2e-05 22.3 0.0 0.00048 19.8 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF377 PF04041.8 gi|119720059|ref|YP_920554.1| - 7.2e-48 162.8 0.4 5.2e-23 81.2 0.0 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF377) Regulator_TrmB PF11495.3 gi|119720060|ref|YP_920555.1| - 1.2e-51 174.9 0.0 1.6e-51 174.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|119720060|ref|YP_920555.1| - 8.1e-24 83.1 0.3 1.9e-23 81.9 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|119720060|ref|YP_920555.1| - 9.1e-05 22.0 0.8 0.0006 19.4 0.0 2.6 2 1 1 3 3 3 1 MarR family MarR PF01047.17 gi|119720060|ref|YP_920555.1| - 0.0002 20.9 0.0 0.00073 19.1 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|119720060|ref|YP_920555.1| - 0.00032 20.0 0.1 0.001 18.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|119720060|ref|YP_920555.1| - 0.00071 19.1 0.8 0.0018 17.7 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|119720060|ref|YP_920555.1| - 0.0009 19.3 1.0 0.051 13.7 0.1 2.9 3 0 0 3 3 3 1 Winged helix-turn helix HTH_20 PF12840.2 gi|119720060|ref|YP_920555.1| - 0.0015 18.2 1.8 0.0059 16.3 0.0 2.8 4 0 0 4 4 4 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|119720060|ref|YP_920555.1| - 0.0041 17.2 0.0 0.011 15.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|119720060|ref|YP_920555.1| - 0.015 15.6 0.0 0.047 14.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|119720060|ref|YP_920555.1| - 0.022 14.3 0.0 0.08 12.6 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|119720060|ref|YP_920555.1| - 0.044 13.8 0.0 0.15 12.1 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|119720060|ref|YP_920555.1| - 0.078 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Glyco_hydro_65m PF03632.10 gi|119720061|ref|YP_920556.1| - 9.7e-103 343.6 0.0 1.2e-102 343.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.10 gi|119720061|ref|YP_920556.1| - 1.7e-08 34.1 0.0 2.6e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain HAD_2 PF13419.1 gi|119720062|ref|YP_920557.1| - 4.8e-08 33.4 0.0 6.8e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|119720062|ref|YP_920557.1| - 0.0012 19.0 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase OTCace_N PF02729.16 gi|119720063|ref|YP_920558.1| - 2.1e-42 144.1 0.0 2.8e-42 143.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|119720063|ref|YP_920558.1| - 4.5e-31 107.8 0.0 7e-31 107.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|119720064|ref|YP_920559.1| - 1.7e-37 127.3 0.1 2.1e-37 127.0 0.1 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|119720064|ref|YP_920559.1| - 7.7e-21 73.2 0.3 1.2e-20 72.6 0.2 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Amidohydro_4 PF13147.1 gi|119720065|ref|YP_920560.1| - 3.5e-26 92.8 4.9 1.7e-25 90.6 3.3 2.3 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|119720065|ref|YP_920560.1| - 5.3e-16 59.2 0.0 9.5e-14 51.7 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|119720065|ref|YP_920560.1| - 3.3e-13 49.2 0.0 6.7e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|119720065|ref|YP_920560.1| - 3.5e-08 33.0 0.0 0.0027 16.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family DHOase PF12890.2 gi|119720065|ref|YP_920560.1| - 0.073 12.7 0.0 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 Dihydro-orotase-like DHODB_Fe-S_bind PF10418.4 gi|119720066|ref|YP_920561.1| - 3.7e-13 48.7 1.8 6.1e-13 48.0 1.3 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|119720066|ref|YP_920561.1| - 3e-11 43.8 0.0 5.4e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|119720066|ref|YP_920561.1| - 1.2e-06 28.5 0.0 1.8e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.7 gi|119720066|ref|YP_920561.1| - 0.066 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 FAD-binding domain DHO_dh PF01180.16 gi|119720067|ref|YP_920562.1| - 4.6e-51 173.5 0.0 5.3e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|119720067|ref|YP_920562.1| - 1.1e-05 24.4 0.0 4.3e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Y_phosphatase3C PF13348.1 gi|119720067|ref|YP_920562.1| - 0.011 15.7 0.2 0.062 13.4 0.0 2.1 1 1 0 2 2 2 0 Tyrosine phosphatase family C-terminal region NanE PF04131.9 gi|119720067|ref|YP_920562.1| - 0.02 13.8 0.1 1.6 7.6 0.1 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|119720067|ref|YP_920562.1| - 0.042 12.8 1.1 0.44 9.4 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|119720067|ref|YP_920562.1| - 0.11 11.7 0.2 1.8 7.8 0.1 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein NMO PF03060.10 gi|119720067|ref|YP_920562.1| - 1.6 7.7 6.9 4.3 6.3 4.8 1.9 1 1 0 1 1 1 0 Nitronate monooxygenase HD PF01966.17 gi|119720068|ref|YP_920563.1| - 1.3e-17 63.8 1.6 1.3e-17 63.8 1.1 1.8 2 0 0 2 2 2 1 HD domain Protoglobin PF11563.3 gi|119720068|ref|YP_920563.1| - 0.13 11.9 0.2 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 Protoglobin CTP_synth_N PF06418.9 gi|119720069|ref|YP_920564.1| - 1.5e-118 394.8 0.0 1.9e-118 394.5 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|119720069|ref|YP_920564.1| - 1.8e-41 141.7 0.0 3.4e-41 140.8 0.0 1.4 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|119720069|ref|YP_920564.1| - 8.4e-12 44.9 0.0 4.1e-11 42.7 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|119720069|ref|YP_920564.1| - 0.00032 20.1 0.0 0.00068 19.1 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Transaldolase PF00923.14 gi|119720070|ref|YP_920565.1| - 2.7e-11 43.1 0.0 4.5e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Transaldolase ABC_tran PF00005.22 gi|119720071|ref|YP_920566.1| - 4.2e-32 111.3 0.0 6.2e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720071|ref|YP_920566.1| - 2.3e-09 37.6 0.0 8.5e-05 22.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|119720071|ref|YP_920566.1| - 1.2e-05 25.1 0.0 3.7e-05 23.6 0.0 1.9 1 0 0 1 1 1 1 TOBE domain Rad17 PF03215.10 gi|119720071|ref|YP_920566.1| - 0.00078 18.2 0.0 0.00095 17.9 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|119720071|ref|YP_920566.1| - 0.0021 17.3 0.1 0.09 11.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|119720071|ref|YP_920566.1| - 0.0024 18.0 0.0 0.008 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|119720071|ref|YP_920566.1| - 0.0034 17.3 0.2 0.007 16.3 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain TOBE PF03459.12 gi|119720071|ref|YP_920566.1| - 0.0071 16.4 0.0 0.11 12.6 0.0 2.4 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|119720071|ref|YP_920566.1| - 0.0086 15.1 0.0 0.082 11.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|119720071|ref|YP_920566.1| - 0.018 15.2 0.1 0.048 13.8 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|119720071|ref|YP_920566.1| - 0.02 14.0 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|119720071|ref|YP_920566.1| - 0.027 14.1 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|119720071|ref|YP_920566.1| - 0.028 14.1 0.0 0.075 12.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|119720071|ref|YP_920566.1| - 0.053 13.4 0.1 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|119720071|ref|YP_920566.1| - 0.058 12.7 0.0 1.2 8.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|119720071|ref|YP_920566.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119720071|ref|YP_920566.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|119720071|ref|YP_920566.1| - 0.069 13.9 0.2 0.2 12.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|119720071|ref|YP_920566.1| - 0.089 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|119720071|ref|YP_920566.1| - 0.091 12.1 0.1 0.59 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|119720071|ref|YP_920566.1| - 0.098 12.3 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|119720071|ref|YP_920566.1| - 0.13 11.9 0.1 0.35 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|119720071|ref|YP_920566.1| - 0.13 11.7 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain G-alpha PF00503.15 gi|119720071|ref|YP_920566.1| - 0.21 10.2 0.0 0.3 9.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF756 PF05506.7 gi|119720072|ref|YP_920567.1| - 0.0057 17.1 0.0 1.5 9.3 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF756) GDPD PF03009.12 gi|119720073|ref|YP_920568.1| - 6.6e-42 143.7 0.0 1.3e-41 142.7 0.0 1.5 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|119720073|ref|YP_920568.1| - 3.9e-09 36.4 0.3 9.9e-09 35.1 0.2 1.7 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family ThiG PF05690.9 gi|119720073|ref|YP_920568.1| - 0.023 13.7 0.0 0.032 13.3 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG ADH_zinc_N PF00107.21 gi|119720073|ref|YP_920568.1| - 0.025 14.1 0.0 0.11 11.9 0.0 2.1 2 1 0 2 2 2 0 Zinc-binding dehydrogenase FMN_dh PF01070.13 gi|119720073|ref|YP_920568.1| - 0.046 12.5 0.0 0.077 11.8 0.0 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Transglut_core PF01841.14 gi|119720074|ref|YP_920569.1| - 4.6e-22 78.3 0.1 8.4e-22 77.5 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core2 PF13369.1 gi|119720074|ref|YP_920569.1| - 0.024 14.1 0.1 0.054 12.9 0.1 1.5 1 0 0 1 1 1 0 Transglutaminase-like superfamily Epimerase PF01370.16 gi|119720075|ref|YP_920570.1| - 6.4e-55 186.1 0.0 9.6e-55 185.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|119720075|ref|YP_920570.1| - 2.3e-26 92.1 0.0 3.9e-26 91.3 0.0 1.3 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|119720075|ref|YP_920570.1| - 4.2e-21 75.1 0.0 3.1e-20 72.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|119720075|ref|YP_920570.1| - 6.4e-18 65.4 0.6 7.4e-18 65.1 0.0 1.4 2 0 0 2 2 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|119720075|ref|YP_920570.1| - 1.2e-17 63.7 0.0 1.6e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|119720075|ref|YP_920570.1| - 4e-14 52.1 0.1 3e-12 46.0 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|119720075|ref|YP_920570.1| - 6.2e-12 45.7 2.3 4.1e-11 43.0 0.8 2.5 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|119720075|ref|YP_920570.1| - 2.9e-09 36.5 0.0 8e-09 35.0 0.0 1.8 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|119720075|ref|YP_920570.1| - 8.2e-07 28.8 0.4 1.7e-06 27.7 0.1 1.6 2 0 0 2 2 2 1 KR domain TrkA_N PF02254.13 gi|119720075|ref|YP_920570.1| - 0.0018 18.2 0.1 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|119720075|ref|YP_920570.1| - 0.018 15.4 0.1 0.055 13.9 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Ldh_1_N PF00056.18 gi|119720075|ref|YP_920570.1| - 0.041 13.7 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|119720075|ref|YP_920570.1| - 0.058 12.3 0.1 0.096 11.6 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|119720075|ref|YP_920570.1| - 0.071 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|119720075|ref|YP_920570.1| - 0.085 12.6 0.0 0.16 11.7 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|119720075|ref|YP_920570.1| - 0.095 12.8 0.0 0.65 10.0 0.0 2.2 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase Thioredoxin_2 PF13098.1 gi|119720076|ref|YP_920571.1| - 7.7e-07 29.3 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|119720076|ref|YP_920571.1| - 1.8e-06 27.5 0.1 2.9e-06 26.9 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|119720076|ref|YP_920571.1| - 0.00056 19.9 0.1 0.011 15.8 0.1 2.1 1 1 1 2 2 2 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|119720076|ref|YP_920571.1| - 0.05 13.6 0.3 0.082 12.9 0.2 1.2 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|119720076|ref|YP_920571.1| - 0.068 13.1 0.1 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin ABC_tran PF00005.22 gi|119720078|ref|YP_920573.1| - 1.4e-27 96.6 0.0 2e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720078|ref|YP_920573.1| - 1.6e-12 47.9 0.2 5.4e-06 26.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|119720078|ref|YP_920573.1| - 0.00045 20.6 0.3 0.00093 19.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|119720078|ref|YP_920573.1| - 0.00096 18.3 0.1 0.0021 17.2 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|119720078|ref|YP_920573.1| - 0.0031 16.9 0.0 0.006 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|119720078|ref|YP_920573.1| - 0.01 15.2 0.2 0.081 12.3 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|119720078|ref|YP_920573.1| - 0.015 14.5 0.2 3.7 6.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|119720078|ref|YP_920573.1| - 0.018 14.1 0.0 0.33 9.9 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|119720078|ref|YP_920573.1| - 0.045 13.3 0.1 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|119720078|ref|YP_920573.1| - 0.06 13.1 0.1 0.18 11.5 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|119720078|ref|YP_920573.1| - 0.062 12.7 0.1 4.7 6.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein UPF0079 PF02367.12 gi|119720078|ref|YP_920573.1| - 0.091 12.3 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|119720078|ref|YP_920573.1| - 0.1 12.7 0.1 0.25 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|119720079|ref|YP_920574.1| - 1.7e-28 99.6 11.4 2.2e-28 99.3 7.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|119720079|ref|YP_920574.1| - 7.7e-21 74.1 6.1 1.3e-20 73.3 4.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720079|ref|YP_920574.1| - 5e-13 48.7 1.7 8.4e-13 48.0 0.8 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|119720079|ref|YP_920574.1| - 3.7e-07 29.5 23.1 2e-06 27.1 12.6 3.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|119720079|ref|YP_920574.1| - 2e-06 27.2 0.7 2e-06 27.2 0.5 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein Mur_ligase PF01225.20 gi|119720079|ref|YP_920574.1| - 0.047 13.7 0.4 20 5.3 0.0 3.6 3 1 0 3 3 3 0 Mur ligase family, catalytic domain SBP_bac_1 PF01547.20 gi|119720080|ref|YP_920575.1| - 5.2e-25 88.8 12.0 9.5e-25 87.9 8.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HALZ PF02183.13 gi|119720080|ref|YP_920575.1| - 0.12 12.0 0.8 0.25 11.0 0.6 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper DUF1049 PF06305.6 gi|119720080|ref|YP_920575.1| - 1 8.9 4.3 2.8 7.4 2.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1049) BPD_transp_1 PF00528.17 gi|119720081|ref|YP_920576.1| - 2e-15 56.8 19.3 2e-15 56.8 13.4 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720082|ref|YP_920577.1| - 2.2e-11 43.6 20.4 2.2e-11 43.6 14.2 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FLILHELTA PF10306.4 gi|119720082|ref|YP_920577.1| - 0.0063 16.5 1.9 0.031 14.2 0.1 2.3 2 0 0 2 2 2 1 Hypothetical protein FLILHELTA YGGT PF02325.12 gi|119720082|ref|YP_920577.1| - 4 7.4 11.0 0.12 12.3 2.7 2.2 2 0 0 2 2 2 0 YGGT family ABC_tran PF00005.22 gi|119720083|ref|YP_920578.1| - 2.4e-34 118.5 0.0 3.6e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720083|ref|YP_920578.1| - 2.3e-09 37.6 0.0 3.5e-05 23.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|119720083|ref|YP_920578.1| - 2.8e-07 30.4 0.1 7.6e-07 29.0 0.1 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|119720083|ref|YP_920578.1| - 0.00012 21.4 0.5 0.015 14.5 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|119720083|ref|YP_920578.1| - 0.00033 19.8 0.0 0.004 16.2 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain TOBE PF03459.12 gi|119720083|ref|YP_920578.1| - 0.00055 19.9 0.1 0.051 13.6 0.0 3.1 3 0 0 3 3 3 1 TOBE domain AAA_25 PF13481.1 gi|119720083|ref|YP_920578.1| - 0.0024 17.3 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|119720083|ref|YP_920578.1| - 0.0052 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|119720083|ref|YP_920578.1| - 0.012 15.7 0.1 0.04 14.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|119720083|ref|YP_920578.1| - 0.014 14.8 0.1 0.3 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain Rad17 PF03215.10 gi|119720083|ref|YP_920578.1| - 0.016 13.9 0.0 0.021 13.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|119720083|ref|YP_920578.1| - 0.031 13.4 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|119720083|ref|YP_920578.1| - 0.032 14.4 1.2 0.13 12.4 0.6 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|119720083|ref|YP_920578.1| - 0.037 13.5 0.0 0.25 10.8 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|119720083|ref|YP_920578.1| - 0.039 13.7 0.0 0.093 12.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|119720083|ref|YP_920578.1| - 0.041 13.8 0.2 0.24 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|119720083|ref|YP_920578.1| - 0.049 13.3 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_11 PF13086.1 gi|119720083|ref|YP_920578.1| - 0.064 12.8 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|119720083|ref|YP_920578.1| - 0.14 11.2 0.0 0.35 9.9 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|119720083|ref|YP_920578.1| - 0.18 11.2 0.5 0.63 9.4 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain HD_3 PF13023.1 gi|119720084|ref|YP_920579.1| - 1.2e-16 60.8 0.0 2.2e-16 60.0 0.0 1.5 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|119720084|ref|YP_920579.1| - 1e-05 25.5 1.7 3.1e-05 23.9 0.8 2.1 2 1 0 2 2 2 1 HD domain HDOD PF08668.7 gi|119720084|ref|YP_920579.1| - 0.033 13.4 0.2 0.08 12.2 0.1 1.7 1 1 1 2 2 2 0 HDOD domain UbiA PF01040.13 gi|119720085|ref|YP_920580.1| - 1.8e-33 115.8 25.4 2.3e-33 115.4 17.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Radical_SAM PF04055.16 gi|119720086|ref|YP_920581.1| - 6.6e-22 78.4 0.0 1.2e-21 77.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|119720086|ref|YP_920581.1| - 1.2e-07 31.9 0.2 2.6e-07 30.8 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|119720086|ref|YP_920581.1| - 1.5e-07 31.4 0.0 3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|119720086|ref|YP_920581.1| - 3.1e-07 30.5 0.0 7e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ribosomal_S6 PF01250.12 gi|119720086|ref|YP_920581.1| - 0.06 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S6 DUF3104 PF11302.3 gi|119720087|ref|YP_920582.1| - 0.06 12.7 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3104) DUF86 PF01934.12 gi|119720089|ref|YP_920584.1| - 5.7e-07 29.1 0.1 5.9e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 CBFD_NFYB_HMF PF00808.18 gi|119720089|ref|YP_920584.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Tox-MPTase5 PF15641.1 gi|119720089|ref|YP_920584.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase toxin 5 MarC PF01914.12 gi|119720091|ref|YP_920586.1| - 1.2e-42 145.4 9.8 1.4e-42 145.1 6.8 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein AAA_22 PF13401.1 gi|119720092|ref|YP_920587.1| - 0.073 13.2 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain PIN PF01850.16 gi|119720093|ref|YP_920588.1| - 1.5e-14 54.3 0.2 2.3e-14 53.7 0.1 1.3 1 1 0 1 1 1 1 PIN domain DUF1266 PF06889.6 gi|119720093|ref|YP_920588.1| - 0.076 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1266) ClpB_D2-small PF10431.4 gi|119720094|ref|YP_920589.1| - 0.048 13.5 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein CcdA PF07362.7 gi|119720094|ref|YP_920589.1| - 0.074 12.9 0.1 0.25 11.2 0.1 1.8 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA RHH_3 PF12651.2 gi|119720094|ref|YP_920589.1| - 1.6 8.5 0.0 1.6 8.5 0.0 2.8 3 0 0 3 3 3 0 Ribbon-helix-helix domain DUF763 PF05559.6 gi|119720097|ref|YP_920592.1| - 6.1e-129 429.5 0.0 7e-129 429.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) DUF4192 PF13830.1 gi|119720097|ref|YP_920592.1| - 0.017 14.7 0.9 0.031 13.9 0.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4192) EamA PF00892.15 gi|119720098|ref|YP_920593.1| - 2.2e-18 66.5 15.9 2.5e-18 66.3 11.0 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|119720098|ref|YP_920593.1| - 2.7e-08 33.9 10.0 2.7e-08 33.9 7.0 1.6 1 1 1 2 2 2 1 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|119720098|ref|YP_920593.1| - 0.00046 19.1 7.1 0.00051 18.9 4.9 1.0 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|119720098|ref|YP_920593.1| - 0.00098 18.7 13.3 0.0015 18.1 9.3 1.2 1 0 0 1 1 1 1 Triose-phosphate Transporter family UAA PF08449.6 gi|119720098|ref|YP_920593.1| - 0.033 13.1 9.9 0.036 12.9 6.9 1.0 1 0 0 1 1 1 0 UAA transporter family Pox_A14 PF05767.7 gi|119720098|ref|YP_920593.1| - 0.04 13.8 0.8 0.04 13.8 0.5 2.6 1 1 2 3 3 3 0 Poxvirus virion envelope protein A14 UPF0546 PF10639.4 gi|119720098|ref|YP_920593.1| - 0.068 12.9 4.7 0.12 12.1 3.2 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0546 tRNA-synt_2c PF01411.14 gi|119720099|ref|YP_920594.1| - 6.8e-12 44.4 0.0 8.8e-12 44.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|119720099|ref|YP_920594.1| - 3.8e-07 29.8 0.2 7.5e-07 28.9 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain GTP_EFTU_D2 PF03144.20 gi|119720099|ref|YP_920594.1| - 0.074 13.1 0.1 0.3 11.2 0.0 2.0 2 0 0 2 2 2 0 Elongation factor Tu domain 2 Methyltransf_18 PF12847.2 gi|119720100|ref|YP_920595.1| - 3.6e-19 69.3 0.0 6.9e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|119720100|ref|YP_920595.1| - 1.6e-17 63.7 0.1 4.3e-16 59.1 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119720100|ref|YP_920595.1| - 6.6e-16 58.2 0.0 9.3e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119720100|ref|YP_920595.1| - 4.2e-15 55.9 0.0 1e-14 54.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|119720100|ref|YP_920595.1| - 4.3e-14 52.5 0.0 8.4e-14 51.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119720100|ref|YP_920595.1| - 1.1e-12 48.2 0.0 8.7e-12 45.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|119720100|ref|YP_920595.1| - 1.3e-12 47.3 0.1 3.6e-12 45.8 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|119720100|ref|YP_920595.1| - 2.3e-08 33.6 0.0 4.1e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_26 PF13659.1 gi|119720100|ref|YP_920595.1| - 1.7e-07 31.2 0.0 3.6e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119720100|ref|YP_920595.1| - 1.2e-05 24.7 0.0 1.9e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|119720100|ref|YP_920595.1| - 1.7e-05 23.9 0.0 2.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TehB PF03848.9 gi|119720100|ref|YP_920595.1| - 3.1e-05 23.2 0.0 3.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|119720100|ref|YP_920595.1| - 0.00012 21.2 0.0 0.0002 20.5 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|119720100|ref|YP_920595.1| - 0.00014 21.4 0.0 0.00021 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|119720100|ref|YP_920595.1| - 0.00038 19.5 0.0 0.0008 18.5 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.13 gi|119720100|ref|YP_920595.1| - 0.00082 18.9 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.6 gi|119720100|ref|YP_920595.1| - 0.001 17.8 0.0 0.0014 17.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TPMT PF05724.6 gi|119720100|ref|YP_920595.1| - 0.0028 17.1 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) FmrO PF07091.6 gi|119720100|ref|YP_920595.1| - 0.0053 15.7 0.0 0.008 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) AdoMet_MTase PF07757.8 gi|119720100|ref|YP_920595.1| - 0.0061 16.6 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase PrmA PF06325.8 gi|119720100|ref|YP_920595.1| - 0.0065 15.6 0.0 0.0086 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|119720100|ref|YP_920595.1| - 0.014 14.9 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N2227 PF07942.7 gi|119720100|ref|YP_920595.1| - 0.017 14.0 0.1 1.8 7.4 0.0 2.6 1 1 1 2 2 2 0 N2227-like protein FtsJ PF01728.14 gi|119720100|ref|YP_920595.1| - 0.026 14.5 0.0 0.066 13.2 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|119720100|ref|YP_920595.1| - 0.033 13.8 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|119720100|ref|YP_920595.1| - 0.055 12.8 0.0 0.095 12.0 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MethyltransfD12 PF02086.10 gi|119720100|ref|YP_920595.1| - 0.091 12.2 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_3 PF01596.12 gi|119720100|ref|YP_920595.1| - 0.1 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PIG-L PF02585.12 gi|119720101|ref|YP_920596.1| - 1.7e-30 106.1 0.0 2.5e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase AA_permease_2 PF13520.1 gi|119720102|ref|YP_920597.1| - 2.9e-51 174.3 30.7 3.4e-51 174.1 21.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|119720102|ref|YP_920597.1| - 3.4e-31 108.1 31.1 6.2e-31 107.2 21.5 1.3 1 1 0 1 1 1 1 Amino acid permease MS_channel PF00924.13 gi|119720103|ref|YP_920598.1| - 1.2e-26 93.3 0.0 1.7e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel TrkA_N PF02254.13 gi|119720104|ref|YP_920599.1| - 1.8e-29 102.0 1.5 3.8e-29 101.0 0.3 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|119720104|ref|YP_920599.1| - 1e-14 53.8 2.4 2.9e-14 52.4 1.2 2.1 2 0 0 2 2 2 1 TrkA-C domain Pyr_redox PF00070.22 gi|119720104|ref|YP_920599.1| - 2.9e-06 27.5 1.1 1.1e-05 25.6 0.3 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|119720104|ref|YP_920599.1| - 1.3e-05 25.4 1.2 1.8e-05 24.9 0.3 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|119720104|ref|YP_920599.1| - 2.1e-05 24.6 2.5 0.0032 17.4 0.5 2.3 2 1 0 2 2 2 1 NADH(P)-binding DAO PF01266.19 gi|119720104|ref|YP_920599.1| - 2.5e-05 23.3 0.2 5.2e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|119720104|ref|YP_920599.1| - 5.3e-05 22.6 0.4 8.9e-05 21.9 0.2 1.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|119720104|ref|YP_920599.1| - 6.6e-05 22.8 0.3 9.6e-05 22.3 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|119720104|ref|YP_920599.1| - 0.00013 21.1 0.1 0.00015 20.9 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|119720104|ref|YP_920599.1| - 0.00021 21.0 1.4 0.00042 20.0 0.1 2.0 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|119720104|ref|YP_920599.1| - 0.00072 19.9 1.0 0.0029 18.0 0.1 2.3 2 1 1 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|119720104|ref|YP_920599.1| - 0.0012 18.7 0.2 0.0025 17.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NmrA PF05368.8 gi|119720104|ref|YP_920599.1| - 0.0013 18.0 0.7 0.0037 16.5 0.3 1.8 2 1 0 2 2 2 1 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|119720104|ref|YP_920599.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.1 gi|119720104|ref|YP_920599.1| - 0.0061 16.7 0.4 0.099 12.8 0.1 2.4 2 1 0 2 2 2 1 CoA binding domain HI0933_like PF03486.9 gi|119720104|ref|YP_920599.1| - 0.0079 14.7 0.1 0.011 14.2 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|119720104|ref|YP_920599.1| - 0.009 15.5 1.3 0.01 15.4 0.2 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.19 gi|119720104|ref|YP_920599.1| - 0.0096 14.8 0.3 0.018 13.9 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain ADH_zinc_N PF00107.21 gi|119720104|ref|YP_920599.1| - 0.011 15.3 1.8 0.04 13.4 0.2 2.5 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Saccharop_dh PF03435.13 gi|119720104|ref|YP_920599.1| - 0.018 14.0 0.3 0.021 13.8 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|119720104|ref|YP_920599.1| - 0.024 14.4 0.2 0.085 12.6 0.0 2.0 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.1 gi|119720104|ref|YP_920599.1| - 0.03 14.4 0.1 0.048 13.7 0.1 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|119720104|ref|YP_920599.1| - 0.043 13.9 0.1 0.077 13.0 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NUC202 PF08166.7 gi|119720104|ref|YP_920599.1| - 0.055 13.3 0.0 0.095 12.5 0.0 1.3 1 0 0 1 1 1 0 NUC202 domain FAD_binding_3 PF01494.14 gi|119720105|ref|YP_920600.1| - 4.5e-16 58.8 2.8 2.1e-14 53.3 1.9 2.8 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|119720105|ref|YP_920600.1| - 6.5e-13 48.3 0.8 2.6e-08 33.1 0.4 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|119720105|ref|YP_920600.1| - 2.4e-12 46.4 8.7 8.5e-07 28.1 1.4 2.5 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|119720105|ref|YP_920600.1| - 1.4e-10 40.6 0.8 2.4e-10 39.8 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|119720105|ref|YP_920600.1| - 6.7e-10 39.1 0.2 1.2e-09 38.3 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|119720105|ref|YP_920600.1| - 3.2e-09 36.3 5.3 6.3e-09 35.4 3.7 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|119720105|ref|YP_920600.1| - 2.4e-08 32.9 1.0 1.8e-06 26.6 0.4 2.3 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.9 gi|119720105|ref|YP_920600.1| - 1.1e-06 27.5 0.4 0.02 13.5 0.1 3.1 3 0 0 3 3 3 2 Tryptophan halogenase GIDA PF01134.17 gi|119720105|ref|YP_920600.1| - 2.1e-06 26.8 4.8 1.3e-05 24.2 3.3 1.9 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|119720105|ref|YP_920600.1| - 2.1e-06 27.6 1.0 2.5e-05 24.2 0.2 3.1 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|119720105|ref|YP_920600.1| - 8.1e-06 26.0 0.1 1.5e-05 25.1 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|119720105|ref|YP_920600.1| - 1.8e-05 25.0 1.0 0.00019 21.7 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|119720105|ref|YP_920600.1| - 0.00081 18.5 0.4 0.0013 17.9 0.3 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.1 gi|119720105|ref|YP_920600.1| - 0.011 15.4 1.2 0.064 13.0 0.8 2.1 1 1 0 1 1 1 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|119720105|ref|YP_920600.1| - 0.041 13.4 0.1 0.068 12.7 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.19 gi|119720105|ref|YP_920600.1| - 0.043 12.9 2.9 3.2 6.7 0.0 2.8 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.13 gi|119720105|ref|YP_920600.1| - 0.054 13.1 0.1 0.085 12.5 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE PF08491.5 gi|119720105|ref|YP_920600.1| - 0.068 11.9 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Fer2_4 PF13510.1 gi|119720105|ref|YP_920600.1| - 0.19 11.5 0.3 0.7 9.7 0.1 1.9 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Toxin_47 PF15527.1 gi|119720106|ref|YP_920601.1| - 0.029 14.1 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative toxin 47 DUF258 PF03193.11 gi|119720107|ref|YP_920602.1| - 0.0018 17.5 0.0 0.0031 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|119720107|ref|YP_920602.1| - 0.0024 17.8 0.0 0.0038 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|119720107|ref|YP_920602.1| - 0.0061 16.4 0.0 0.014 15.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain Sigma70_r4 PF04545.11 gi|119720107|ref|YP_920602.1| - 0.012 14.9 0.0 0.024 13.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MobB PF03205.9 gi|119720107|ref|YP_920602.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.8 gi|119720107|ref|YP_920602.1| - 0.013 14.4 0.0 0.019 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_29 PF13555.1 gi|119720107|ref|YP_920602.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrmB PF01978.14 gi|119720107|ref|YP_920602.1| - 0.016 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Miro PF08477.8 gi|119720107|ref|YP_920602.1| - 0.016 15.6 0.0 0.03 14.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein ABC_tran PF00005.22 gi|119720107|ref|YP_920602.1| - 0.02 15.1 0.0 0.037 14.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter HTH_IclR PF09339.5 gi|119720107|ref|YP_920602.1| - 0.027 14.0 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2172 PF09940.4 gi|119720107|ref|YP_920602.1| - 0.036 12.4 0.0 0.047 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2172) AAA_28 PF13521.1 gi|119720107|ref|YP_920602.1| - 0.048 13.6 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|119720107|ref|YP_920602.1| - 0.055 12.9 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Guanylate kinase Sigma70_r4_2 PF08281.7 gi|119720107|ref|YP_920602.1| - 0.073 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF742 PF05331.6 gi|119720107|ref|YP_920602.1| - 0.078 12.5 0.0 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF742) MMR_HSR1 PF01926.18 gi|119720107|ref|YP_920602.1| - 0.086 12.7 0.0 0.21 11.5 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|119720107|ref|YP_920602.1| - 0.098 11.7 0.0 0.21 10.6 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.24 gi|119720107|ref|YP_920602.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|119720107|ref|YP_920602.1| - 0.16 12.2 0.1 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain HTH_24 PF13412.1 gi|119720107|ref|YP_920602.1| - 0.17 11.2 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Saccharop_dh PF03435.13 gi|119720108|ref|YP_920603.1| - 3.2e-21 75.7 0.0 5e-21 75.1 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|119720108|ref|YP_920603.1| - 0.007 16.3 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain ThiF PF00899.16 gi|119720108|ref|YP_920603.1| - 0.017 14.9 0.2 0.039 13.7 0.2 1.6 1 0 0 1 1 1 0 ThiF family ApbA PF02558.11 gi|119720108|ref|YP_920603.1| - 0.044 13.2 0.0 0.097 12.1 0.0 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|119720108|ref|YP_920603.1| - 0.15 10.9 0.2 0.29 9.9 0.0 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|119720108|ref|YP_920603.1| - 0.18 10.9 0.0 0.29 10.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CitMHS PF03600.11 gi|119720109|ref|YP_920604.1| - 2.2e-34 118.6 22.3 4.5e-31 107.7 9.6 2.8 1 1 2 3 3 3 2 Citrate transporter ArsB PF02040.10 gi|119720109|ref|YP_920604.1| - 1.5e-14 53.8 22.0 1.5e-14 53.8 15.3 1.4 1 1 0 1 1 1 1 Arsenical pump membrane protein MitoNEET_N PF10660.4 gi|119720109|ref|YP_920604.1| - 3.8 7.4 8.0 3.8 7.4 0.1 3.9 5 0 0 5 5 5 0 Iron-containing outer mitochondrial membrane protein N-terminus FUSC PF04632.7 gi|119720110|ref|YP_920605.1| - 0.01 14.3 0.9 0.019 13.4 0.6 1.4 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4235 PF14019.1 gi|119720110|ref|YP_920605.1| - 0.12 12.2 0.0 0.12 12.2 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4235) GerA PF03323.8 gi|119720110|ref|YP_920605.1| - 0.27 9.3 2.2 0.22 9.6 0.7 1.3 1 1 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein DUF4118 PF13493.1 gi|119720110|ref|YP_920605.1| - 1.2 9.3 8.1 0.1 12.8 1.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) ABC_tran PF00005.22 gi|119720111|ref|YP_920606.1| - 6.5e-19 68.5 0.0 9.3e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720111|ref|YP_920606.1| - 3.8e-13 50.0 0.6 1.5e-07 31.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119720111|ref|YP_920606.1| - 1e-05 24.8 0.0 0.022 14.0 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|119720111|ref|YP_920606.1| - 0.00033 20.8 0.1 0.0081 16.3 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|119720111|ref|YP_920606.1| - 0.0021 17.5 0.0 0.72 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_25 PF13481.1 gi|119720111|ref|YP_920606.1| - 0.0057 16.0 0.0 0.017 14.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|119720111|ref|YP_920606.1| - 0.016 15.5 0.0 0.025 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|119720111|ref|YP_920606.1| - 0.025 14.7 0.2 0.38 10.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|119720111|ref|YP_920606.1| - 0.09 13.6 0.0 0.22 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|119720111|ref|YP_920606.1| - 0.11 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|119720111|ref|YP_920606.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|119720111|ref|YP_920606.1| - 0.13 11.9 0.6 0.52 9.9 0.0 2.1 2 1 1 3 3 3 0 NACHT domain AAA_24 PF13479.1 gi|119720111|ref|YP_920606.1| - 0.14 11.7 0.1 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.12 gi|119720112|ref|YP_920607.1| - 1.5e-64 217.6 0.1 1.9e-64 217.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|119720113|ref|YP_920608.1| - 5.7e-36 124.0 0.0 7.5e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Peripla_BP_4 PF13407.1 gi|119720114|ref|YP_920609.1| - 5.6e-44 150.4 0.0 6.7e-44 150.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.16 gi|119720114|ref|YP_920609.1| - 2.1e-08 33.7 0.0 2.9e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_6 PF13458.1 gi|119720114|ref|YP_920609.1| - 2e-06 27.4 0.1 1.5e-05 24.4 0.0 1.8 1 1 1 2 2 2 1 Periplasmic binding protein Usp PF00582.21 gi|119720114|ref|YP_920609.1| - 0.13 12.4 0.0 0.81 9.8 0.0 2.1 1 1 0 2 2 2 0 Universal stress protein family Peripla_BP_3 PF13377.1 gi|119720114|ref|YP_920609.1| - 0.15 12.0 0.0 0.32 10.9 0.0 1.5 1 1 0 1 1 1 0 Periplasmic binding protein-like domain BPD_transp_2 PF02653.11 gi|119720115|ref|YP_920610.1| - 6e-45 153.2 38.5 9.7e-45 152.6 26.7 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|119720116|ref|YP_920611.1| - 7.1e-30 104.0 0.0 9.5e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720116|ref|YP_920611.1| - 5.2e-10 39.7 0.1 0.00028 20.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119720116|ref|YP_920611.1| - 7.6e-06 25.3 0.2 0.00014 21.1 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|119720116|ref|YP_920611.1| - 9.5e-05 21.1 1.3 0.032 12.8 0.1 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|119720116|ref|YP_920611.1| - 0.00013 21.5 0.0 0.24 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain ArgK PF03308.11 gi|119720116|ref|YP_920611.1| - 0.00043 19.1 0.1 0.00081 18.2 0.0 1.4 1 0 0 1 1 1 1 ArgK protein AAA_29 PF13555.1 gi|119720116|ref|YP_920611.1| - 0.00057 19.3 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|119720116|ref|YP_920611.1| - 0.0016 17.8 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_30 PF13604.1 gi|119720116|ref|YP_920611.1| - 0.004 16.7 0.1 0.038 13.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|119720116|ref|YP_920611.1| - 0.0075 16.6 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|119720116|ref|YP_920611.1| - 0.014 14.4 0.0 2.7 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|119720116|ref|YP_920611.1| - 0.029 13.5 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|119720116|ref|YP_920611.1| - 0.034 13.7 0.1 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|119720116|ref|YP_920611.1| - 0.04 13.9 0.3 0.088 12.7 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|119720116|ref|YP_920611.1| - 0.045 14.2 0.0 0.091 13.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|119720116|ref|YP_920611.1| - 0.053 13.1 0.0 0.098 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|119720116|ref|YP_920611.1| - 0.06 13.2 0.1 0.51 10.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|119720116|ref|YP_920611.1| - 0.095 12.0 0.0 0.37 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|119720116|ref|YP_920611.1| - 0.12 11.2 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|119720116|ref|YP_920611.1| - 0.2 10.4 0.4 0.57 8.9 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain MtmB PF05369.7 gi|119720117|ref|YP_920612.1| - 6.3e-52 176.2 0.0 8e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding PF02310.14 gi|119720118|ref|YP_920613.1| - 8.9e-28 96.5 2.5 8.9e-28 96.5 1.7 1.8 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|119720118|ref|YP_920613.1| - 2.8e-15 56.1 0.1 8.4e-15 54.5 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain Hydrolase PF00702.21 gi|119720118|ref|YP_920613.1| - 0.19 12.1 1.3 0.29 11.5 0.9 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Arch_flagellin PF01917.11 gi|119720120|ref|YP_920615.1| - 2.6e-05 23.9 15.7 0.0001 21.9 10.9 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin DUF1628 PF07790.6 gi|119720120|ref|YP_920615.1| - 0.00036 21.2 3.7 0.00036 21.2 2.5 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DUF3262 PF11660.3 gi|119720120|ref|YP_920615.1| - 0.013 15.6 0.9 0.019 15.0 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DUF945 PF06097.6 gi|119720120|ref|YP_920615.1| - 0.22 10.2 4.0 0.2 10.4 2.3 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF945) PapD_C PF02753.12 gi|119720120|ref|YP_920615.1| - 0.3 10.9 4.1 0.63 9.9 2.9 1.5 1 1 0 1 1 1 0 Pili assembly chaperone PapD, C-terminal domain MacB_PCD PF12704.2 gi|119720120|ref|YP_920615.1| - 0.32 10.5 7.1 0.44 10.0 4.9 1.2 1 0 0 1 1 1 0 MacB-like periplasmic core domain CARDB PF07705.6 gi|119720120|ref|YP_920615.1| - 0.35 10.9 6.9 0.5 10.4 4.8 1.3 1 0 0 1 1 1 0 CARDB PPC PF04151.10 gi|119720120|ref|YP_920615.1| - 1.1 10.3 7.0 1.6 9.7 4.9 1.4 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain UDPG_MGDP_dh PF00984.14 gi|119720121|ref|YP_920616.1| - 3.4e-08 33.6 0.0 6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_N PF03721.9 gi|119720121|ref|YP_920616.1| - 0.00019 20.8 0.3 2.2 7.6 0.0 3.2 2 1 1 3 3 3 3 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|119720121|ref|YP_920616.1| - 0.00025 20.2 0.0 0.00039 19.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|119720121|ref|YP_920616.1| - 0.003 17.5 0.0 0.0076 16.2 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain ThiF PF00899.16 gi|119720121|ref|YP_920616.1| - 0.05 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 ThiF family NAD_binding_2 PF03446.10 gi|119720121|ref|YP_920616.1| - 0.087 12.6 0.0 0.24 11.2 0.0 1.8 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_trans_4_4 PF13579.1 gi|119720121|ref|YP_920616.1| - 0.14 12.3 6.4 0.34 11.0 4.2 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain ABC2_membrane_4 PF12730.2 gi|119720122|ref|YP_920617.1| - 0.073 12.2 3.4 0.089 11.9 2.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Sdh_cyt PF01127.17 gi|119720122|ref|YP_920617.1| - 0.2 11.4 2.3 0.28 11.0 1.6 1.2 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF1206 PF06724.6 gi|119720122|ref|YP_920617.1| - 1.3 8.8 8.1 5.2 6.8 5.4 1.9 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) FeoB_C PF07664.7 gi|119720122|ref|YP_920617.1| - 1.6 8.2 7.0 0.24 10.8 0.3 2.3 2 1 0 2 2 2 0 Ferrous iron transport protein B C terminus DUF4117 PF13491.1 gi|119720122|ref|YP_920617.1| - 4.7 6.6 9.5 40 3.6 6.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4117) DUF72 PF01904.13 gi|119720123|ref|YP_920618.1| - 9.6e-45 153.1 0.0 1.1e-44 152.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|119720123|ref|YP_920618.1| - 0.017 14.3 0.0 0.024 13.9 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Peptidase_M48 PF01435.13 gi|119720124|ref|YP_920619.1| - 4.4e-35 121.2 0.2 1e-34 120.1 0.0 1.7 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|119720124|ref|YP_920619.1| - 0.0023 16.9 0.0 0.0037 16.2 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 Serine_rich PF08824.5 gi|119720125|ref|YP_920620.1| - 0.076 12.7 0.0 0.08 12.6 0.0 1.2 1 0 0 1 1 1 0 Serine rich protein interaction domain zf-RanBP PF00641.13 gi|119720127|ref|YP_920622.1| - 3.4e-05 22.8 0.8 4.9e-05 22.3 0.5 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|119720127|ref|YP_920622.1| - 0.00028 19.9 4.6 0.00049 19.2 3.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119720127|ref|YP_920622.1| - 0.00062 19.1 3.4 0.0011 18.3 2.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|119720127|ref|YP_920622.1| - 0.00075 19.2 0.3 0.0014 18.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon MarR_2 PF12802.2 gi|119720127|ref|YP_920622.1| - 0.0038 16.8 0.1 0.011 15.4 0.1 1.8 1 0 0 1 1 1 1 MarR family Thioredoxin_3 PF13192.1 gi|119720127|ref|YP_920622.1| - 0.03 14.1 0.0 0.073 12.8 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin domain ArsD PF06953.6 gi|119720127|ref|YP_920622.1| - 0.062 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD HTH_27 PF13463.1 gi|119720127|ref|YP_920622.1| - 0.072 13.4 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|119720127|ref|YP_920622.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 MarR family PGG PF13962.1 gi|119720127|ref|YP_920622.1| - 0.28 10.8 6.2 1.4 8.5 4.3 2.2 1 1 0 1 1 1 0 Domain of unknown function DUF35_N PF12172.3 gi|119720127|ref|YP_920622.1| - 2.2 8.2 6.7 5.5 7.0 4.7 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ABC_tran PF00005.22 gi|119720128|ref|YP_920623.1| - 7.2e-28 97.5 0.0 2.4e-27 95.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|119720128|ref|YP_920623.1| - 1.2e-10 41.8 0.0 1.3e-05 25.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|119720128|ref|YP_920623.1| - 1.5e-08 35.0 0.1 4.4e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) KdpD PF02702.12 gi|119720128|ref|YP_920623.1| - 0.002 17.3 0.3 0.0061 15.7 0.0 1.9 3 0 0 3 3 3 1 Osmosensitive K+ channel His kinase sensor domain AAA_25 PF13481.1 gi|119720128|ref|YP_920623.1| - 0.0034 16.7 0.2 0.15 11.4 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|119720128|ref|YP_920623.1| - 0.0035 17.7 0.4 0.0077 16.5 0.3 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720128|ref|YP_920623.1| - 0.0048 16.4 0.1 0.0096 15.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|119720128|ref|YP_920623.1| - 0.0065 16.6 0.5 0.26 11.5 0.3 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|119720128|ref|YP_920623.1| - 0.0083 15.3 0.1 0.75 8.9 0.1 2.8 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|119720128|ref|YP_920623.1| - 0.009 15.4 0.2 0.048 13.0 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|119720128|ref|YP_920623.1| - 0.053 12.9 0.2 0.35 10.2 0.1 1.9 1 1 1 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|119720128|ref|YP_920623.1| - 0.08 12.7 0.2 0.27 11.0 0.1 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|119720128|ref|YP_920623.1| - 0.093 12.2 0.0 0.33 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|119720128|ref|YP_920623.1| - 0.094 12.6 0.1 1.3 8.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|119720128|ref|YP_920623.1| - 0.15 12.0 0.2 0.56 10.1 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane_4 PF12730.2 gi|119720129|ref|YP_920624.1| - 1.2e-06 27.9 20.4 1.7e-06 27.3 13.5 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|119720129|ref|YP_920624.1| - 0.00024 20.2 24.3 0.00031 19.8 16.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|119720129|ref|YP_920624.1| - 0.046 12.5 15.0 0.029 13.2 9.1 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|119720130|ref|YP_920625.1| - 1.1e-15 57.3 14.2 1.1e-15 57.3 9.8 1.4 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|119720130|ref|YP_920625.1| - 4.6e-06 25.6 16.8 4.6e-06 25.6 11.6 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|119720130|ref|YP_920625.1| - 5.9e-06 25.5 20.2 7.3e-06 25.2 14.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720130|ref|YP_920625.1| - 8e-06 25.1 17.1 1e-05 24.8 11.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Peptidase_M1 PF01433.15 gi|119720131|ref|YP_920626.1| - 1e-64 219.0 0.0 1.4e-64 218.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|119720131|ref|YP_920626.1| - 5.1e-26 90.7 12.9 9.6e-12 45.0 2.1 4.4 1 1 2 4 4 4 4 HEAT repeats Peptidase_MA_2 PF13485.1 gi|119720131|ref|YP_920626.1| - 1.2e-13 51.2 0.7 3.1e-13 49.8 0.5 1.8 1 0 0 1 1 1 1 Peptidase MA superfamily HEAT_PBS PF03130.11 gi|119720131|ref|YP_920626.1| - 1e-07 31.7 22.1 0.021 15.2 0.3 6.9 7 0 0 7 7 6 3 PBS lyase HEAT-like repeat DUF4200 PF13863.1 gi|119720131|ref|YP_920626.1| - 0.0032 17.4 7.0 0.0066 16.3 4.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) HEAT PF02985.17 gi|119720131|ref|YP_920626.1| - 0.023 14.7 5.5 12 6.2 0.0 5.7 7 0 0 7 7 7 0 HEAT repeat Latarcin PF10279.4 gi|119720131|ref|YP_920626.1| - 0.038 14.1 3.7 0.14 12.3 2.5 2.0 1 0 0 1 1 1 0 Latarcin precursor UPF0147 PF03685.8 gi|119720131|ref|YP_920626.1| - 0.11 12.3 0.9 15 5.5 0.1 3.5 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0147) APG6 PF04111.7 gi|119720131|ref|YP_920626.1| - 0.13 11.3 0.9 0.19 10.7 0.6 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Adaptin_N PF01602.15 gi|119720131|ref|YP_920626.1| - 0.14 10.4 0.1 2.8 6.1 0.0 2.1 1 1 1 2 2 2 0 Adaptin N terminal region HEAT_EZ PF13513.1 gi|119720131|ref|YP_920626.1| - 0.24 11.9 11.8 0.75 10.3 0.1 4.7 3 2 3 6 6 6 0 HEAT-like repeat DivIC PF04977.10 gi|119720131|ref|YP_920626.1| - 0.63 9.5 3.9 1.2 8.6 2.7 1.5 1 0 0 1 1 1 0 Septum formation initiator DUF4131 PF13567.1 gi|119720132|ref|YP_920627.1| - 0.0051 16.2 0.1 0.0054 16.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) IncA PF04156.9 gi|119720132|ref|YP_920627.1| - 0.014 15.0 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 IncA protein DUF2614 PF11023.3 gi|119720132|ref|YP_920627.1| - 0.066 12.9 0.1 0.073 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DUF3487 PF11990.3 gi|119720132|ref|YP_920627.1| - 0.099 12.0 0.1 0.097 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) T2SM PF04612.7 gi|119720132|ref|YP_920627.1| - 0.4 10.4 0.0 0.4 10.4 0.0 1.9 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M RuBisCO_large PF00016.15 gi|119720133|ref|YP_920628.1| - 8.5e-79 264.6 0.0 1.1e-78 264.2 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|119720133|ref|YP_920628.1| - 8.5e-32 109.5 0.0 2e-31 108.3 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain FA_desaturase_2 PF03405.9 gi|119720133|ref|YP_920628.1| - 0.037 12.8 0.0 0.061 12.0 0.0 1.2 1 0 0 1 1 1 0 Fatty acid desaturase Glyco_trans_4_3 PF12000.3 gi|119720133|ref|YP_920628.1| - 0.072 12.7 0.1 1.4 8.5 0.0 2.2 1 1 0 2 2 2 0 Gkycosyl transferase family 4 group Radical_SAM PF04055.16 gi|119720134|ref|YP_920629.1| - 9.7e-20 71.3 0.0 1.7e-18 67.3 0.0 2.4 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|119720134|ref|YP_920629.1| - 0.00017 21.4 0.1 0.017 15.0 0.0 2.6 3 0 0 3 3 3 2 B12 binding domain Flavin_Reduct PF01613.13 gi|119720136|ref|YP_920631.1| - 4.7e-27 94.7 0.0 5.5e-27 94.5 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|119720136|ref|YP_920631.1| - 0.066 12.7 0.0 0.088 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Fe-ADH_2 PF13685.1 gi|119720137|ref|YP_920632.1| - 3e-63 213.4 0.0 3.7e-63 213.1 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|119720137|ref|YP_920632.1| - 5.7e-28 97.5 1.8 1.3e-27 96.4 1.2 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|119720137|ref|YP_920632.1| - 3.6e-09 35.9 0.1 3.6e-06 26.1 0.0 2.5 2 1 0 2 2 2 2 3-dehydroquinate synthase CN_hydrolase PF00795.17 gi|119720138|ref|YP_920633.1| - 1.6e-18 66.7 0.0 4e-18 65.4 0.0 1.6 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase HAD_2 PF13419.1 gi|119720139|ref|YP_920634.1| - 4e-20 72.7 0.0 5.2e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|119720139|ref|YP_920634.1| - 1.1e-10 41.0 0.0 2.9e-10 39.6 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|119720139|ref|YP_920634.1| - 3e-08 34.3 0.0 1.9e-07 31.7 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|119720139|ref|YP_920634.1| - 0.022 14.6 0.0 2.8 7.8 0.0 2.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Methyltransf_11 PF08241.7 gi|119720140|ref|YP_920635.1| - 2.1e-07 31.3 0.0 9.3e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|119720140|ref|YP_920635.1| - 0.03 13.9 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_25 PF13649.1 gi|119720140|ref|YP_920635.1| - 0.093 13.0 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|119720140|ref|YP_920635.1| - 0.15 11.1 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family SPASM PF13186.1 gi|119720141|ref|YP_920636.1| - 1.9e-13 50.5 0.0 3.6e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|119720141|ref|YP_920636.1| - 9.8e-11 42.1 0.0 1.9e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|119720141|ref|YP_920636.1| - 0.0013 18.7 0.0 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain NikR_C PF08753.6 gi|119720142|ref|YP_920637.1| - 7.7e-18 64.1 0.1 1e-17 63.7 0.1 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|119720142|ref|YP_920637.1| - 3.4e-08 33.0 0.5 6.4e-08 32.1 0.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|119720142|ref|YP_920637.1| - 1.4e-05 24.6 0.2 2.9e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain PT-VENN PF04829.8 gi|119720142|ref|YP_920637.1| - 0.13 11.8 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif tRNA_edit PF04073.10 gi|119720143|ref|YP_920638.1| - 1.1e-30 106.0 0.1 1.3e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain CENP-F_C_Rb_bdg PF10490.4 gi|119720143|ref|YP_920638.1| - 0.024 13.9 1.3 1.6 8.1 0.1 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 Glyco_hydro_16 PF00722.16 gi|119720144|ref|YP_920639.1| - 3e-05 23.3 0.1 4.1e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 Laminin_G_3 PF13385.1 gi|119720144|ref|YP_920639.1| - 0.0017 18.6 0.1 0.0024 18.1 0.1 1.5 1 1 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.19 gi|119720144|ref|YP_920639.1| - 0.078 13.0 0.0 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Laminin G domain VIT1 PF01988.14 gi|119720145|ref|YP_920640.1| - 2.2e-15 56.7 12.9 1.2e-14 54.3 8.7 1.9 2 0 0 2 2 2 1 VIT family HemN_C PF06969.11 gi|119720145|ref|YP_920640.1| - 0.028 14.4 0.2 0.058 13.4 0.2 1.6 1 0 0 1 1 1 0 HemN C-terminal domain GntR PF00392.16 gi|119720145|ref|YP_920640.1| - 0.031 13.6 0.0 0.084 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|119720145|ref|YP_920640.1| - 0.039 13.7 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix PNP_UDP_1 PF01048.15 gi|119720146|ref|YP_920641.1| - 1.6e-40 138.5 2.2 2e-40 138.2 1.5 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily bact-PGI_C PF10432.4 gi|119720146|ref|YP_920641.1| - 0.042 13.5 0.1 0.088 12.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal region LacAB_rpiB PF02502.13 gi|119720147|ref|YP_920642.1| - 3.8e-37 127.0 0.0 4e-37 126.9 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase SBP_bac_5 PF00496.17 gi|119720151|ref|YP_920646.1| - 2e-59 201.3 9.1 5.3e-43 147.2 0.6 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|119720152|ref|YP_920647.1| - 9.2e-39 132.8 19.9 9.2e-39 132.8 13.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720153|ref|YP_920648.1| - 5.5e-28 97.7 10.8 5.5e-28 97.7 7.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|119720153|ref|YP_920648.1| - 0.0049 16.2 0.1 0.0049 16.2 0.1 2.7 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BCLP PF12304.3 gi|119720153|ref|YP_920648.1| - 0.24 10.8 2.9 0.49 9.7 2.0 1.5 1 0 0 1 1 1 0 Beta-casein like protein ABC_tran PF00005.22 gi|119720154|ref|YP_920649.1| - 1.5e-26 93.3 0.0 2e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119720154|ref|YP_920649.1| - 3.2e-21 75.4 0.1 5.7e-21 74.6 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119720154|ref|YP_920649.1| - 4.4e-12 46.5 0.0 3e-08 33.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|119720154|ref|YP_920649.1| - 2e-05 24.1 0.0 0.017 14.5 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|119720154|ref|YP_920649.1| - 0.00036 19.7 0.0 0.00065 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|119720154|ref|YP_920649.1| - 0.0015 18.6 0.3 0.65 10.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|119720154|ref|YP_920649.1| - 0.002 17.5 0.0 0.17 11.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|119720154|ref|YP_920649.1| - 0.0021 17.5 0.0 0.0039 16.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119720154|ref|YP_920649.1| - 0.004 16.4 0.0 1.4 8.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF87 PF01935.12 gi|119720154|ref|YP_920649.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|119720154|ref|YP_920649.1| - 0.018 14.9 0.2 0.04 13.9 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|119720154|ref|YP_920649.1| - 0.026 14.0 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|119720154|ref|YP_920649.1| - 0.079 11.8 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|119720154|ref|YP_920649.1| - 0.089 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|119720154|ref|YP_920649.1| - 0.12 11.8 0.3 0.66 9.3 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_ATPase PF09818.4 gi|119720154|ref|YP_920649.1| - 0.13 10.8 0.0 0.41 9.1 0.0 1.8 1 1 0 1 1 1 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|119720154|ref|YP_920649.1| - 0.14 11.3 0.0 0.82 8.7 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|119720154|ref|YP_920649.1| - 0.16 10.8 0.0 0.28 10.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|119720155|ref|YP_920650.1| - 3.4e-33 114.8 0.0 4.7e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119720155|ref|YP_920650.1| - 6.6e-21 74.4 1.0 1.1e-20 73.6 0.7 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119720155|ref|YP_920650.1| - 8.1e-11 42.4 0.4 3.2e-08 33.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119720155|ref|YP_920650.1| - 2e-05 23.9 0.3 0.00011 21.5 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|119720155|ref|YP_920650.1| - 0.00086 18.7 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|119720155|ref|YP_920650.1| - 0.0016 18.5 0.3 0.011 15.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119720155|ref|YP_920650.1| - 0.0037 17.2 0.0 0.0065 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|119720155|ref|YP_920650.1| - 0.011 15.6 0.0 0.15 12.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|119720155|ref|YP_920650.1| - 0.014 14.5 0.1 0.023 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|119720155|ref|YP_920650.1| - 0.017 13.6 0.3 0.1 11.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|119720155|ref|YP_920650.1| - 0.023 13.7 0.0 0.15 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|119720155|ref|YP_920650.1| - 0.031 14.4 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|119720155|ref|YP_920650.1| - 0.047 13.3 0.0 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|119720155|ref|YP_920650.1| - 0.11 11.5 0.0 0.26 10.4 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|119720155|ref|YP_920650.1| - 0.14 11.5 0.0 0.36 10.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|119720155|ref|YP_920650.1| - 0.16 11.7 0.2 0.4 10.4 0.1 1.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|119720155|ref|YP_920650.1| - 0.2 10.5 0.2 1.1 8.0 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain NTP_transf_3 PF12804.2 gi|119720156|ref|YP_920651.1| - 3.5e-13 49.9 0.0 5.6e-12 46.0 0.0 2.3 1 1 0 2 2 2 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|119720156|ref|YP_920651.1| - 1.9e-11 43.7 0.0 1.6e-09 37.4 0.0 2.2 2 0 0 2 2 2 2 Nucleotidyl transferase CDP-OH_P_transf PF01066.16 gi|119720157|ref|YP_920652.1| - 6.3e-07 29.6 3.7 6.3e-07 29.6 2.6 1.7 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase NTP_transf_3 PF12804.2 gi|119720157|ref|YP_920652.1| - 0.078 13.0 0.2 0.26 11.3 0.0 2.0 2 0 0 2 2 2 0 MobA-like NTP transferase domain NTP_transf_2 PF01909.18 gi|119720158|ref|YP_920653.1| - 1.6e-07 31.5 0.1 2.1e-07 31.1 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|119720159|ref|YP_920654.1| - 1.8e-12 46.9 0.0 2.2e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 Radical_SAM PF04055.16 gi|119720160|ref|YP_920655.1| - 2.2e-18 66.9 0.0 4.4e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|119720160|ref|YP_920655.1| - 1.3e-08 35.0 0.0 2.6e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|119720160|ref|YP_920655.1| - 6.2e-06 26.2 0.0 1.6e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain BPD_transp_1 PF00528.17 gi|119720161|ref|YP_920656.1| - 1.9e-14 53.5 18.4 1.9e-14 53.5 12.7 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720162|ref|YP_920657.1| - 1.8e-13 50.4 20.7 1.8e-13 50.4 14.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|119720163|ref|YP_920658.1| - 1.5e-19 70.9 1.2 2.1e-19 70.4 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|119720163|ref|YP_920658.1| - 2.6e-14 53.6 0.0 4.1e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119720163|ref|YP_920658.1| - 0.036 13.7 0.0 4.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein FdhD-NarQ PF02634.10 gi|119720164|ref|YP_920659.1| - 6.5e-47 159.9 0.0 9.4e-39 133.2 0.0 2.0 1 1 1 2 2 2 2 FdhD/NarQ family GCV_T_C PF08669.6 gi|119720164|ref|YP_920659.1| - 0.058 13.4 0.0 14 5.7 0.0 2.3 2 0 0 2 2 2 0 Glycine cleavage T-protein C-terminal barrel domain MarR_2 PF12802.2 gi|119720166|ref|YP_920661.1| - 3.9e-08 32.8 0.2 1.1e-07 31.3 0.2 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|119720166|ref|YP_920661.1| - 5.3e-07 28.9 0.2 1.3e-06 27.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|119720166|ref|YP_920661.1| - 1.5e-06 27.9 1.1 3.2e-06 26.8 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|119720166|ref|YP_920661.1| - 1.7e-05 24.3 0.2 1.7e-05 24.3 0.2 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|119720166|ref|YP_920661.1| - 0.0002 20.8 1.0 0.0002 20.8 0.7 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|119720166|ref|YP_920661.1| - 0.00024 20.7 0.0 0.0005 19.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|119720166|ref|YP_920661.1| - 0.00085 18.9 0.1 0.0018 17.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|119720166|ref|YP_920661.1| - 0.0025 18.1 0.0 0.005 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|119720166|ref|YP_920661.1| - 0.0087 16.0 0.0 0.023 14.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|119720166|ref|YP_920661.1| - 0.017 14.8 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|119720166|ref|YP_920661.1| - 0.041 13.8 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|119720166|ref|YP_920661.1| - 0.051 13.6 0.1 0.16 12.0 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator Alba PF01918.16 gi|119720167|ref|YP_920662.1| - 1.6e-06 27.5 0.1 2.1e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 Alba AAA_14 PF13173.1 gi|119720168|ref|YP_920663.1| - 4.3e-25 88.0 0.0 6.6e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|119720168|ref|YP_920663.1| - 5.5e-09 36.0 0.1 1.3e-08 34.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) AAA_16 PF13191.1 gi|119720168|ref|YP_920663.1| - 0.00052 20.0 0.0 0.0013 18.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|119720168|ref|YP_920663.1| - 0.0019 17.9 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|119720168|ref|YP_920663.1| - 0.0034 16.8 0.0 0.043 13.2 0.0 2.5 2 2 1 3 3 3 1 AAA-like domain AAA_22 PF13401.1 gi|119720168|ref|YP_920663.1| - 0.0052 16.9 0.0 1.9 8.5 0.0 2.9 2 1 1 3 3 3 1 AAA domain Cas_APE2256 PF09651.5 gi|119720169|ref|YP_920664.1| - 1.5e-40 138.0 0.0 2.4e-40 137.4 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Cas_NE0113 PF09623.5 gi|119720169|ref|YP_920664.1| - 0.026 13.9 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_Cas02710 PF09670.5 gi|119720169|ref|YP_920664.1| - 0.15 10.6 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) PEPcase_2 PF14010.1 gi|119720171|ref|YP_920666.1| - 1.6e-117 392.8 0.0 1.7e-117 392.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|119720171|ref|YP_920666.1| - 2e-07 29.3 0.1 3.8e-07 28.3 0.0 1.4 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase HpcH_HpaI PF03328.9 gi|119720171|ref|YP_920666.1| - 0.012 14.5 0.0 0.024 13.5 0.0 1.4 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family Arch_ATPase PF01637.13 gi|119720173|ref|YP_920668.1| - 1.1e-34 120.2 0.0 3.4e-34 118.5 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|119720173|ref|YP_920668.1| - 3.1e-08 33.8 1.4 1e-06 28.8 1.0 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|119720173|ref|YP_920668.1| - 3.9e-08 33.2 0.0 0.0031 17.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|119720173|ref|YP_920668.1| - 0.013 15.5 0.0 0.073 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain HTH_20 PF12840.2 gi|119720173|ref|YP_920668.1| - 0.028 14.2 0.0 0.11 12.3 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|119720173|ref|YP_920668.1| - 0.052 12.8 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family ATP_bind_3 PF01171.15 gi|119720174|ref|YP_920669.1| - 2.8e-19 69.3 0.0 1.2e-18 67.2 0.0 1.9 1 1 0 1 1 1 1 PP-loop family Asn_synthase PF00733.16 gi|119720174|ref|YP_920669.1| - 0.00034 20.2 0.1 0.00049 19.6 0.1 1.1 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|119720174|ref|YP_920669.1| - 0.0036 15.9 0.1 0.013 14.0 0.1 1.9 2 1 0 2 2 2 1 tRNA methyl transferase RecR PF02132.10 gi|119720174|ref|YP_920669.1| - 0.004 16.5 1.0 0.004 16.5 0.7 3.2 3 0 0 3 3 3 1 RecR protein Nudix_N_2 PF14803.1 gi|119720174|ref|YP_920669.1| - 0.41 10.3 7.3 12 5.6 0.1 3.5 3 0 0 3 3 3 0 Nudix N-terminal zf-HIT PF04438.11 gi|119720174|ref|YP_920669.1| - 1.2 8.8 14.6 0.95 9.1 0.2 4.2 3 1 0 3 3 3 0 HIT zinc finger RRN7 PF11781.3 gi|119720174|ref|YP_920669.1| - 5.9 6.4 12.6 1.3 8.6 0.2 3.9 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 Glyco_hydro_57 PF03065.10 gi|119720175|ref|YP_920670.1| - 4.7e-07 29.0 0.0 8.3e-07 28.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 FG-GAP PF01839.18 gi|119720175|ref|YP_920670.1| - 0.009 15.6 3.7 0.26 11.0 0.2 3.2 2 0 0 2 2 2 2 FG-GAP repeat VCBS PF13517.1 gi|119720175|ref|YP_920670.1| - 0.017 15.5 5.1 0.88 9.9 0.8 3.5 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CarboxypepD_reg PF13620.1 gi|119720176|ref|YP_920671.1| - 1e-12 47.8 17.6 8.3e-09 35.3 4.2 3.4 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|119720176|ref|YP_920671.1| - 1.9e-05 24.5 1.3 0.0017 18.3 0.2 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4480) IFT57 PF10498.4 gi|119720176|ref|YP_920671.1| - 0.00058 18.7 2.3 0.00084 18.1 1.6 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 A2M_N PF01835.14 gi|119720176|ref|YP_920671.1| - 0.0012 19.0 0.0 0.087 13.0 0.0 3.4 3 1 1 4 4 4 1 MG2 domain DUF745 PF05335.8 gi|119720176|ref|YP_920671.1| - 0.0028 17.2 3.3 0.0048 16.4 2.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF745) YscO PF07321.7 gi|119720176|ref|YP_920671.1| - 0.0098 15.7 3.0 0.015 15.1 2.1 1.2 1 0 0 1 1 1 1 Type III secretion protein YscO IncA PF04156.9 gi|119720176|ref|YP_920671.1| - 0.015 14.9 2.4 0.015 14.9 1.7 1.9 2 0 0 2 2 2 0 IncA protein Atg14 PF10186.4 gi|119720176|ref|YP_920671.1| - 0.015 14.2 1.9 0.021 13.8 1.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Reo_sigmaC PF04582.7 gi|119720176|ref|YP_920671.1| - 0.025 13.7 0.3 0.063 12.4 0.1 1.6 1 1 0 1 1 1 0 Reovirus sigma C capsid protein BLOC1_2 PF10046.4 gi|119720176|ref|YP_920671.1| - 0.06 13.4 0.6 0.089 12.9 0.4 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TOBE PF03459.12 gi|119720176|ref|YP_920671.1| - 0.065 13.3 0.4 1.6 8.8 0.0 3.2 3 0 0 3 3 3 0 TOBE domain Cna_B PF05738.8 gi|119720176|ref|YP_920671.1| - 0.1 12.3 0.6 2.5 7.9 0.1 2.5 2 0 0 2 2 2 0 Cna protein B-type domain TMF_DNA_bd PF12329.3 gi|119720176|ref|YP_920671.1| - 0.18 11.6 9.5 0.35 10.7 6.6 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Spc7 PF08317.6 gi|119720176|ref|YP_920671.1| - 0.22 10.1 1.9 0.31 9.6 1.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DivIVA PF05103.8 gi|119720176|ref|YP_920671.1| - 0.28 11.2 1.7 0.47 10.5 1.2 1.3 1 0 0 1 1 1 0 DivIVA protein DUF4200 PF13863.1 gi|119720176|ref|YP_920671.1| - 0.35 10.8 4.2 0.52 10.2 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) GAS PF13851.1 gi|119720176|ref|YP_920671.1| - 0.48 9.5 4.6 0.67 9.1 3.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cortex-I_coil PF09304.5 gi|119720176|ref|YP_920671.1| - 0.49 10.4 7.9 0.74 9.8 5.4 1.2 1 0 0 1 1 1 0 Cortexillin I, coiled coil ADIP PF11559.3 gi|119720176|ref|YP_920671.1| - 0.86 9.4 6.9 1.3 8.9 4.8 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding CCDC-167 PF15188.1 gi|119720176|ref|YP_920671.1| - 1.4 8.8 5.6 2.3 8.2 3.9 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 Lactamase_B PF00753.22 gi|119720177|ref|YP_920672.1| - 1.2e-14 54.4 1.7 2e-14 53.7 1.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|119720177|ref|YP_920672.1| - 6.5e-09 35.6 0.0 7.4e-09 35.4 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|119720177|ref|YP_920672.1| - 0.0048 16.6 0.0 0.0074 16.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Cas_DxTHG PF09455.5 gi|119720178|ref|YP_920673.1| - 1.2e-49 169.5 0.0 4.2e-49 167.7 0.0 1.7 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family ABC_tran PF00005.22 gi|119720179|ref|YP_920674.1| - 6.2e-22 78.3 0.0 9.1e-22 77.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720179|ref|YP_920674.1| - 2.3e-10 40.9 0.0 1.2e-07 31.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|119720179|ref|YP_920674.1| - 0.0082 15.8 0.2 0.15 11.7 0.1 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|119720179|ref|YP_920674.1| - 0.012 15.1 0.2 0.2 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|119720179|ref|YP_920674.1| - 0.043 14.1 0.1 0.076 13.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119720179|ref|YP_920674.1| - 0.056 13.3 0.0 0.18 11.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|119720179|ref|YP_920674.1| - 0.12 11.8 1.1 0.25 10.7 0.7 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|119720179|ref|YP_920674.1| - 0.15 11.6 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119720179|ref|YP_920674.1| - 0.17 11.0 0.1 8.5 5.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.2 gi|119720180|ref|YP_920675.1| - 6.9e-19 67.7 4.3 1.7e-18 66.5 3.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720180|ref|YP_920675.1| - 1.3e-10 40.8 4.4 3.1e-10 39.6 3.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|119720180|ref|YP_920675.1| - 4.5e-06 25.9 16.1 7.9e-06 25.1 11.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|119720180|ref|YP_920675.1| - 0.00029 20.1 4.4 0.00053 19.3 3.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein 7tm_1 PF00001.16 gi|119720180|ref|YP_920675.1| - 0.0011 18.1 0.0 0.003 16.7 0.0 1.6 1 1 0 1 1 1 1 7 transmembrane receptor (rhodopsin family) DUF3883 PF13020.1 gi|119720181|ref|YP_920676.1| - 1.3e-13 50.4 1.7 1.8e-13 50.0 1.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF3883) TMF_DNA_bd PF12329.3 gi|119720182|ref|YP_920677.1| - 3.3e-11 42.8 2.1 1.8e-06 27.6 0.0 2.2 1 1 1 2 2 2 2 TATA element modulatory factor 1 DNA binding SlyX PF04102.7 gi|119720182|ref|YP_920677.1| - 4e-08 33.5 0.7 0.00074 19.8 0.1 2.4 1 1 2 3 3 3 2 SlyX DivIC PF04977.10 gi|119720182|ref|YP_920677.1| - 8.7e-08 31.5 3.2 0.0053 16.2 0.6 3.2 1 1 2 3 3 3 2 Septum formation initiator ATG16 PF08614.6 gi|119720182|ref|YP_920677.1| - 1e-07 31.9 1.4 1.3e-07 31.6 1.0 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Reo_sigmaC PF04582.7 gi|119720182|ref|YP_920677.1| - 1.4e-07 31.0 0.7 1.7e-07 30.7 0.5 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Prefoldin_2 PF01920.15 gi|119720182|ref|YP_920677.1| - 2.1e-07 30.6 0.7 0.043 13.5 0.1 3.1 1 1 2 3 3 3 2 Prefoldin subunit Spc7 PF08317.6 gi|119720182|ref|YP_920677.1| - 3.2e-07 29.3 3.7 0.00038 19.2 0.7 1.8 1 1 1 2 2 2 2 Spc7 kinetochore protein IncA PF04156.9 gi|119720182|ref|YP_920677.1| - 4.5e-07 29.6 2.2 4.5e-07 29.6 1.5 2.0 1 1 1 2 2 1 1 IncA protein DUF1664 PF07889.7 gi|119720182|ref|YP_920677.1| - 6.5e-07 29.1 2.6 0.00044 20.0 1.0 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|119720182|ref|YP_920677.1| - 1.1e-06 28.7 1.3 2.4e-05 24.3 0.9 2.4 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.4 gi|119720182|ref|YP_920677.1| - 1.2e-06 28.3 3.7 0.0002 21.1 2.1 2.4 1 1 1 2 2 2 2 Haemolysin XhlA DUF4140 PF13600.1 gi|119720182|ref|YP_920677.1| - 1.2e-06 28.9 5.2 0.035 14.5 0.1 3.0 1 1 1 2 2 2 2 N-terminal domain of unknown function (DUF4140) CENP-F_leu_zip PF10473.4 gi|119720182|ref|YP_920677.1| - 1.5e-06 28.1 1.6 5.6e-06 26.2 1.1 1.7 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.3 gi|119720182|ref|YP_920677.1| - 2.1e-06 27.2 0.0 6.1e-06 25.6 0.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) bZIP_1 PF00170.16 gi|119720182|ref|YP_920677.1| - 3.1e-06 27.0 0.2 0.053 13.4 0.0 3.2 1 1 2 3 3 3 3 bZIP transcription factor Baculo_PEP_C PF04513.7 gi|119720182|ref|YP_920677.1| - 4.8e-06 26.4 0.0 0.00049 19.9 0.0 2.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus FliD_C PF07195.7 gi|119720182|ref|YP_920677.1| - 5.3e-06 25.9 0.8 0.0081 15.4 0.0 2.5 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus TBPIP PF07106.8 gi|119720182|ref|YP_920677.1| - 6.5e-06 25.7 0.6 5e-05 22.9 0.4 2.0 1 1 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_13 PF13166.1 gi|119720182|ref|YP_920677.1| - 6.9e-06 24.8 0.2 0.001 17.6 0.0 1.9 1 1 1 2 2 2 2 AAA domain APG6 PF04111.7 gi|119720182|ref|YP_920677.1| - 7.8e-06 25.1 0.1 9.5e-06 24.8 0.1 1.1 1 0 0 1 1 1 1 Autophagy protein Apg6 AAA_27 PF13514.1 gi|119720182|ref|YP_920677.1| - 8.2e-06 23.8 2.0 8.9e-06 23.7 1.4 1.0 1 0 0 1 1 1 1 AAA domain EzrA PF06160.7 gi|119720182|ref|YP_920677.1| - 8.9e-06 24.1 0.4 1.2e-05 23.7 0.3 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA CALCOCO1 PF07888.6 gi|119720182|ref|YP_920677.1| - 9.6e-06 24.1 1.4 1.2e-05 23.8 1.0 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Tropomyosin_1 PF12718.2 gi|119720182|ref|YP_920677.1| - 9.7e-06 25.4 1.9 4e-05 23.4 1.4 1.8 1 1 0 1 1 1 1 Tropomyosin like Laminin_I PF06008.9 gi|119720182|ref|YP_920677.1| - 9.9e-06 25.0 0.1 1.3e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Laminin Domain I NPV_P10 PF05531.7 gi|119720182|ref|YP_920677.1| - 1.5e-05 25.1 0.8 0.0025 18.0 0.3 2.7 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein ADIP PF11559.3 gi|119720182|ref|YP_920677.1| - 1.5e-05 24.9 0.3 0.027 14.3 0.0 2.1 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding Transposase_22 PF02994.9 gi|119720182|ref|YP_920677.1| - 1.7e-05 23.5 0.5 3e-05 22.6 0.3 1.4 1 1 0 1 1 1 1 L1 transposable element DUF869 PF05911.6 gi|119720182|ref|YP_920677.1| - 1.8e-05 23.2 1.2 2.1e-05 22.9 0.8 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) FlaC_arch PF05377.6 gi|119720182|ref|YP_920677.1| - 2e-05 24.4 0.4 0.06 13.2 0.1 3.0 1 1 3 4 4 4 1 Flagella accessory protein C (FlaC) Prefoldin_3 PF13758.1 gi|119720182|ref|YP_920677.1| - 2e-05 24.2 4.5 0.19 11.4 0.4 3.0 1 1 0 1 1 1 1 Prefoldin subunit DUF3552 PF12072.3 gi|119720182|ref|YP_920677.1| - 3.3e-05 23.1 3.7 6.8e-05 22.1 2.5 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|119720182|ref|YP_920677.1| - 4e-05 23.6 0.3 0.28 11.2 0.0 3.0 1 1 2 3 3 3 1 DivIVA protein Tropomyosin PF00261.15 gi|119720182|ref|YP_920677.1| - 4.2e-05 22.7 3.4 8.8e-05 21.6 2.4 1.4 1 1 0 1 1 1 1 Tropomyosin MbeD_MobD PF04899.7 gi|119720182|ref|YP_920677.1| - 4.8e-05 23.1 0.1 0.31 10.9 0.0 3.2 1 1 1 2 2 2 1 MbeD/MobD like DUF948 PF06103.6 gi|119720182|ref|YP_920677.1| - 6e-05 22.8 0.2 0.0079 16.0 0.0 2.6 1 1 2 3 3 2 1 Bacterial protein of unknown function (DUF948) Prefoldin PF02996.12 gi|119720182|ref|YP_920677.1| - 7.6e-05 22.3 1.3 0.015 14.8 0.3 2.9 1 1 2 3 3 3 1 Prefoldin subunit Myosin_tail_1 PF01576.14 gi|119720182|ref|YP_920677.1| - 8.7e-05 20.4 3.6 9.9e-05 20.2 2.5 1.0 1 0 0 1 1 1 1 Myosin tail Snapin_Pallidin PF14712.1 gi|119720182|ref|YP_920677.1| - 8.8e-05 22.7 0.6 0.00044 20.5 0.3 2.3 1 1 0 1 1 1 1 Snapin/Pallidin GAS PF13851.1 gi|119720182|ref|YP_920677.1| - 9.3e-05 21.7 0.4 0.021 14.0 0.1 2.0 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.17 gi|119720182|ref|YP_920677.1| - 9.4e-05 22.3 6.6 0.0019 18.2 1.0 2.2 1 1 2 3 3 3 2 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.4 gi|119720182|ref|YP_920677.1| - 9.5e-05 21.4 3.8 0.0003 19.8 2.6 1.8 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF4631 PF15450.1 gi|119720182|ref|YP_920677.1| - 9.6e-05 20.8 1.7 0.00011 20.6 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4631) Fmp27_WPPW PF10359.4 gi|119720182|ref|YP_920677.1| - 0.00011 20.7 1.6 0.004 15.6 0.3 2.0 1 1 1 2 2 2 1 RNA pol II promoter Fmp27 protein domain Gp58 PF07902.6 gi|119720182|ref|YP_920677.1| - 0.00012 20.4 0.3 0.0002 19.7 0.2 1.2 1 1 0 1 1 1 1 gp58-like protein DUF16 PF01519.11 gi|119720182|ref|YP_920677.1| - 0.00013 22.1 0.3 0.00029 20.9 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF16 Fib_alpha PF08702.5 gi|119720182|ref|YP_920677.1| - 0.00013 22.0 0.2 0.0032 17.5 0.1 2.3 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Cast PF10174.4 gi|119720182|ref|YP_920677.1| - 0.00014 20.0 3.1 0.00017 19.8 2.2 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Uds1 PF15456.1 gi|119720182|ref|YP_920677.1| - 0.00016 21.6 4.3 0.17 11.8 0.1 2.9 1 1 2 3 3 3 1 Up-regulated During Septation DUF4200 PF13863.1 gi|119720182|ref|YP_920677.1| - 0.00019 21.4 1.7 0.004 17.0 1.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|119720182|ref|YP_920677.1| - 0.00019 21.2 0.2 0.00051 19.8 0.2 1.7 1 1 0 1 1 1 1 Laminin Domain II Nup54 PF13874.1 gi|119720182|ref|YP_920677.1| - 0.00019 21.0 0.4 0.00083 19.0 0.1 2.0 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 Ax_dynein_light PF10211.4 gi|119720182|ref|YP_920677.1| - 0.00022 21.1 0.6 0.065 13.0 0.1 2.5 1 1 1 2 2 2 1 Axonemal dynein light chain V_ATPase_I PF01496.14 gi|119720182|ref|YP_920677.1| - 0.0003 18.8 0.1 0.00036 18.5 0.1 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family bZIP_2 PF07716.10 gi|119720182|ref|YP_920677.1| - 0.00031 20.4 0.1 9.2 6.1 0.1 3.3 1 1 2 3 3 3 0 Basic region leucine zipper Med9 PF07544.8 gi|119720182|ref|YP_920677.1| - 0.00044 19.9 3.8 0.33 10.7 0.8 2.7 1 1 1 2 2 2 2 RNA polymerase II transcription mediator complex subunit 9 HrpB7 PF09486.5 gi|119720182|ref|YP_920677.1| - 0.00045 20.1 2.0 0.0022 17.9 0.7 2.4 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) Filament PF00038.16 gi|119720182|ref|YP_920677.1| - 0.00046 19.7 1.2 0.00087 18.8 0.9 1.4 1 1 0 1 1 1 1 Intermediate filament protein DUF3584 PF12128.3 gi|119720182|ref|YP_920677.1| - 0.00051 17.5 0.7 0.00062 17.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Spectrin PF00435.16 gi|119720182|ref|YP_920677.1| - 0.00055 20.1 0.3 0.0074 16.5 0.2 2.2 1 1 1 2 2 2 1 Spectrin repeat DUF812 PF05667.6 gi|119720182|ref|YP_920677.1| - 0.00057 18.5 0.7 0.3 9.5 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF812) Vac_Fusion PF02346.11 gi|119720182|ref|YP_920677.1| - 0.00063 19.1 3.1 0.0086 15.4 0.0 3.1 2 1 0 3 3 3 1 Chordopoxvirus fusion protein MAD PF05557.8 gi|119720182|ref|YP_920677.1| - 0.00067 17.8 2.3 0.0013 16.9 1.6 1.4 1 1 0 1 1 1 1 Mitotic checkpoint protein DUF2730 PF10805.3 gi|119720182|ref|YP_920677.1| - 0.00075 19.2 2.6 0.15 11.8 0.1 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) Occludin_ELL PF07303.8 gi|119720182|ref|YP_920677.1| - 0.00089 19.9 0.8 2.9 8.6 0.0 3.0 1 1 2 3 3 2 0 Occludin homology domain Med4 PF10018.4 gi|119720182|ref|YP_920677.1| - 0.0011 18.3 4.0 0.065 12.6 1.3 2.8 1 1 1 2 2 2 1 Vitamin-D-receptor interacting Mediator subunit 4 DUF4618 PF15397.1 gi|119720182|ref|YP_920677.1| - 0.0012 18.3 0.1 0.56 9.4 0.0 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) DUF4164 PF13747.1 gi|119720182|ref|YP_920677.1| - 0.0012 18.9 12.4 0.016 15.2 1.6 2.9 1 1 2 3 3 2 1 Domain of unknown function (DUF4164) Vps5 PF09325.5 gi|119720182|ref|YP_920677.1| - 0.0013 18.0 1.3 0.85 8.8 0.2 2.2 1 1 1 2 2 2 0 Vps5 C terminal like Cluap1 PF10234.4 gi|119720182|ref|YP_920677.1| - 0.0013 17.9 2.7 0.15 11.2 0.5 2.1 1 1 1 2 2 2 1 Clusterin-associated protein-1 TMF_TATA_bd PF12325.3 gi|119720182|ref|YP_920677.1| - 0.0014 18.3 0.6 0.012 15.3 0.4 2.2 1 1 0 1 1 1 1 TATA element modulatory factor 1 TATA binding Lzipper-MIP1 PF14389.1 gi|119720182|ref|YP_920677.1| - 0.0015 18.6 0.8 0.22 11.6 0.1 2.8 1 1 2 3 3 3 1 Leucine-zipper of ternary complex factor MIP1 CENP-Q PF13094.1 gi|119720182|ref|YP_920677.1| - 0.0016 18.4 0.3 0.0037 17.3 0.2 1.6 1 1 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit Sipho_Gp157 PF05565.6 gi|119720182|ref|YP_920677.1| - 0.002 17.7 1.2 0.0047 16.5 0.6 1.8 1 1 1 2 2 2 1 Siphovirus Gp157 MscS_porin PF12795.2 gi|119720182|ref|YP_920677.1| - 0.0022 17.3 0.1 0.005 16.1 0.1 1.6 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain CCDC155 PF14662.1 gi|119720182|ref|YP_920677.1| - 0.0023 17.5 0.2 0.003 17.2 0.2 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 Phasin PF05597.6 gi|119720182|ref|YP_920677.1| - 0.0023 17.6 3.9 0.8 9.4 2.7 3.7 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HSBP1 PF06825.7 gi|119720182|ref|YP_920677.1| - 0.0027 17.2 11.2 0.51 9.9 0.3 3.5 1 1 2 3 3 3 1 Heat shock factor binding protein 1 COG2 PF06148.6 gi|119720182|ref|YP_920677.1| - 0.0027 17.5 0.8 0.5 10.2 0.1 2.2 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 HOOK PF05622.7 gi|119720182|ref|YP_920677.1| - 0.0029 15.4 0.7 0.0035 15.2 0.5 1.1 1 0 0 1 1 1 1 HOOK protein Dynamitin PF04912.9 gi|119720182|ref|YP_920677.1| - 0.003 16.4 1.3 0.0041 15.9 0.9 1.3 1 0 0 1 1 1 1 Dynamitin NTR2 PF15458.1 gi|119720182|ref|YP_920677.1| - 0.0031 16.7 0.8 0.055 12.6 0.6 2.1 1 1 0 1 1 1 1 Nineteen complex-related protein 2 DUF2721 PF11026.3 gi|119720182|ref|YP_920677.1| - 0.0032 17.1 5.3 0.0079 15.8 0.9 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF2721) Snf7 PF03357.16 gi|119720182|ref|YP_920677.1| - 0.0032 16.8 2.3 0.063 12.6 1.1 2.5 1 1 0 1 1 1 1 Snf7 Transcrip_act PF04949.8 gi|119720182|ref|YP_920677.1| - 0.0034 17.0 6.0 0.027 14.1 3.8 2.4 1 1 1 2 2 2 1 Transcriptional activator Tektin PF03148.9 gi|119720182|ref|YP_920677.1| - 0.0038 15.8 2.2 0.037 12.5 0.2 2.1 1 1 1 2 2 2 1 Tektin family DUF972 PF06156.8 gi|119720182|ref|YP_920677.1| - 0.004 17.4 0.1 0.15 12.4 0.0 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF972) Val_tRNA-synt_C PF10458.4 gi|119720182|ref|YP_920677.1| - 0.0041 17.1 3.7 1.8 8.6 0.2 3.8 1 1 3 4 4 4 0 Valyl tRNA synthetase tRNA binding arm DUF730 PF05325.6 gi|119720182|ref|YP_920677.1| - 0.0041 16.9 0.1 0.082 12.7 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF730) CCDC-167 PF15188.1 gi|119720182|ref|YP_920677.1| - 0.0049 16.7 3.4 0.078 12.9 0.6 3.0 1 1 1 2 2 2 1 Coiled-coil domain-containing protein 167 HalX PF08663.5 gi|119720182|ref|YP_920677.1| - 0.005 16.8 9.5 0.43 10.5 1.1 3.7 1 1 2 3 3 3 1 HalX domain TPR_MLP1_2 PF07926.7 gi|119720182|ref|YP_920677.1| - 0.005 16.5 0.3 0.016 14.9 0.2 1.9 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF390 PF04094.9 gi|119720182|ref|YP_920677.1| - 0.0053 14.8 1.3 0.0059 14.7 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF390) FemAB PF02388.11 gi|119720182|ref|YP_920677.1| - 0.0054 15.4 0.0 0.007 15.0 0.0 1.2 1 0 0 1 1 1 1 FemAB family Osmo_CC PF08946.5 gi|119720182|ref|YP_920677.1| - 0.0057 16.6 4.8 2.8 8.0 1.1 3.7 1 1 2 3 3 3 0 Osmosensory transporter coiled coil FlxA PF14282.1 gi|119720182|ref|YP_920677.1| - 0.0058 16.5 0.1 0.34 10.8 0.0 2.7 1 1 0 1 1 1 1 FlxA-like protein Nsp1_C PF05064.8 gi|119720182|ref|YP_920677.1| - 0.006 16.2 0.2 0.09 12.4 0.1 2.1 1 1 1 2 2 2 1 Nsp1-like C-terminal region PspA_IM30 PF04012.7 gi|119720182|ref|YP_920677.1| - 0.0062 15.9 0.1 0.9 8.8 0.0 2.1 1 1 1 2 2 2 0 PspA/IM30 family DUF2802 PF10975.3 gi|119720182|ref|YP_920677.1| - 0.0066 16.1 0.0 10 5.9 0.0 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2802) PspB PF06667.7 gi|119720182|ref|YP_920677.1| - 0.007 16.2 7.1 2.3 8.2 0.4 3.4 1 1 2 3 3 3 0 Phage shock protein B Mnd1 PF03962.10 gi|119720182|ref|YP_920677.1| - 0.007 16.0 0.3 0.053 13.1 0.2 2.1 1 1 0 1 1 1 1 Mnd1 family DASH_Spc34 PF08657.5 gi|119720182|ref|YP_920677.1| - 0.007 16.0 0.4 0.31 10.6 0.3 2.6 1 1 0 1 1 1 1 DASH complex subunit Spc34 GP41 PF00517.12 gi|119720182|ref|YP_920677.1| - 0.0074 15.8 0.0 1.9 7.9 0.0 2.4 1 1 1 2 2 2 0 Retroviral envelope protein phiKZ_IP PF12699.2 gi|119720182|ref|YP_920677.1| - 0.0075 15.2 3.1 0.18 10.7 2.1 2.4 1 1 0 1 1 1 1 phiKZ-like phage internal head proteins Syntaxin PF00804.20 gi|119720182|ref|YP_920677.1| - 0.0076 16.3 1.6 0.076 13.1 0.8 2.2 1 1 1 2 2 2 1 Syntaxin FUSC PF04632.7 gi|119720182|ref|YP_920677.1| - 0.0077 14.7 0.7 0.011 14.2 0.5 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family DUF603 PF04645.7 gi|119720182|ref|YP_920677.1| - 0.0086 16.0 2.6 0.056 13.3 0.6 2.2 1 1 1 2 2 2 1 Protein of unknown function, DUF603 DUF4446 PF14584.1 gi|119720182|ref|YP_920677.1| - 0.0088 15.8 0.9 0.18 11.5 0.1 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4446) Matrilin_ccoil PF10393.4 gi|119720182|ref|YP_920677.1| - 0.009 15.3 1.0 2.2 7.7 0.1 3.0 1 1 3 4 4 4 0 Trimeric coiled-coil oligomerisation domain of matrilin E2R135 PF11570.3 gi|119720182|ref|YP_920677.1| - 0.0092 16.0 0.6 0.25 11.4 0.5 2.1 1 1 0 1 1 1 1 Coiled-coil receptor-binding R-domain of colicin E2 DUF342 PF03961.8 gi|119720182|ref|YP_920677.1| - 0.01 14.2 0.9 0.056 11.8 0.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF342) BicD PF09730.4 gi|119720182|ref|YP_920677.1| - 0.011 14.1 0.1 0.014 13.8 0.1 1.2 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Syntaxin_2 PF14523.1 gi|119720182|ref|YP_920677.1| - 0.011 15.6 1.0 0.11 12.5 0.7 2.3 1 1 0 1 1 1 0 Syntaxin-like protein Cortex-I_coil PF09304.5 gi|119720182|ref|YP_920677.1| - 0.012 15.6 5.1 0.12 12.3 3.2 2.3 1 1 0 1 1 1 0 Cortexillin I, coiled coil FliJ PF02050.11 gi|119720182|ref|YP_920677.1| - 0.012 15.6 0.0 0.027 14.5 0.0 1.6 1 1 0 1 1 1 0 Flagellar FliJ protein DUF904 PF06005.7 gi|119720182|ref|YP_920677.1| - 0.012 15.9 0.4 0.24 11.7 0.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF904) MerR-DNA-bind PF09278.6 gi|119720182|ref|YP_920677.1| - 0.012 16.0 8.4 2.3 8.6 0.3 3.9 1 1 3 4 4 4 0 MerR, DNA binding DUF1465 PF07323.7 gi|119720182|ref|YP_920677.1| - 0.013 15.1 1.9 0.69 9.4 1.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) Spc24 PF08286.6 gi|119720182|ref|YP_920677.1| - 0.013 15.2 0.2 1.5 8.5 0.1 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Sec3_C PF09763.4 gi|119720182|ref|YP_920677.1| - 0.014 13.6 0.3 0.017 13.2 0.2 1.2 1 0 0 1 1 1 0 Exocyst complex component Sec3 PilJ PF13675.1 gi|119720182|ref|YP_920677.1| - 0.014 15.7 0.9 0.61 10.4 0.6 2.3 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term TraF_2 PF13729.1 gi|119720182|ref|YP_920677.1| - 0.014 14.1 0.7 0.019 13.7 0.2 1.5 2 0 0 2 2 1 0 F plasmid transfer operon, TraF, protein Streptin-Immun PF11083.3 gi|119720182|ref|YP_920677.1| - 0.016 15.1 0.3 7.4 6.6 0.0 3.1 1 1 1 2 2 2 0 Lantibiotic streptin immunity protein DUF1202 PF06717.6 gi|119720182|ref|YP_920677.1| - 0.016 14.5 0.4 0.25 10.5 0.0 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1202) DUF4094 PF13334.1 gi|119720182|ref|YP_920677.1| - 0.016 15.5 1.6 10 6.6 0.1 3.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Bacillus_HBL PF05791.6 gi|119720182|ref|YP_920677.1| - 0.016 14.5 0.1 0.22 10.8 0.0 1.8 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF3373 PF11853.3 gi|119720182|ref|YP_920677.1| - 0.016 13.7 0.6 1.6 7.2 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3373) Allexi_40kDa PF05549.6 gi|119720182|ref|YP_920677.1| - 0.017 14.4 0.3 0.057 12.7 0.1 1.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF677 PF05055.7 gi|119720182|ref|YP_920677.1| - 0.018 13.7 1.0 0.89 8.1 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF677) Lebercilin PF15619.1 gi|119720182|ref|YP_920677.1| - 0.019 14.3 1.9 0.18 11.2 1.3 2.3 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Bap31 PF05529.7 gi|119720182|ref|YP_920677.1| - 0.02 14.3 0.2 2.2 7.7 0.1 2.3 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like MitMem_reg PF13012.1 gi|119720182|ref|YP_920677.1| - 0.021 14.9 0.2 3.8 7.6 0.0 2.4 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function AIP3 PF03915.8 gi|119720182|ref|YP_920677.1| - 0.022 13.7 3.4 0.029 13.2 2.3 1.2 1 0 0 1 1 1 0 Actin interacting protein 3 Jnk-SapK_ap_N PF09744.4 gi|119720182|ref|YP_920677.1| - 0.024 14.6 1.1 0.28 11.1 0.2 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 RmuC PF02646.11 gi|119720182|ref|YP_920677.1| - 0.025 13.4 0.1 0.68 8.7 0.0 2.1 1 1 1 2 2 2 0 RmuC family TMCO5 PF14992.1 gi|119720182|ref|YP_920677.1| - 0.026 13.6 0.4 0.035 13.2 0.3 1.2 1 0 0 1 1 1 0 TMCO5 family Vps51 PF08700.6 gi|119720182|ref|YP_920677.1| - 0.027 14.2 0.3 16 5.4 0.1 3.1 1 1 3 4 4 4 0 Vps51/Vps67 HemX PF04375.9 gi|119720182|ref|YP_920677.1| - 0.028 13.0 0.1 0.08 11.5 0.0 1.7 1 1 0 1 1 1 0 HemX WEMBL PF05701.6 gi|119720182|ref|YP_920677.1| - 0.029 12.8 1.2 0.033 12.6 0.8 1.0 1 0 0 1 1 1 0 Weak chloroplast movement under blue light FH2 PF02181.18 gi|119720182|ref|YP_920677.1| - 0.029 13.2 0.1 0.037 12.9 0.0 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain Phage_GP20 PF06810.6 gi|119720182|ref|YP_920677.1| - 0.032 13.6 1.6 0.16 11.3 0.7 2.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 YscO PF07321.7 gi|119720182|ref|YP_920677.1| - 0.032 14.0 1.6 1.2 8.9 0.1 2.2 1 1 1 2 2 2 0 Type III secretion protein YscO DUF4201 PF13870.1 gi|119720182|ref|YP_920677.1| - 0.034 13.5 2.1 4.3 6.7 0.0 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4201) AKNA PF12443.3 gi|119720182|ref|YP_920677.1| - 0.034 14.1 0.4 0.18 11.8 0.3 2.1 1 1 0 1 1 1 0 AT-hook-containing transcription factor MRF_C1 PF13887.1 gi|119720182|ref|YP_920677.1| - 0.036 13.0 10.7 13 4.9 1.3 4.6 1 1 2 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 KLRAQ PF10205.4 gi|119720182|ref|YP_920677.1| - 0.036 14.0 0.3 1.9 8.5 0.1 2.3 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein Taxilin PF09728.4 gi|119720182|ref|YP_920677.1| - 0.037 13.1 0.3 0.19 10.7 0.1 1.9 1 1 0 1 1 1 0 Myosin-like coiled-coil protein MAP65_ASE1 PF03999.7 gi|119720182|ref|YP_920677.1| - 0.037 12.6 1.0 0.049 12.2 0.7 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) DUF607 PF04678.8 gi|119720182|ref|YP_920677.1| - 0.038 13.9 0.1 2.5 7.9 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF607 HHH_8 PF14716.1 gi|119720182|ref|YP_920677.1| - 0.039 14.1 0.8 24 5.2 0.0 3.3 1 1 2 3 3 3 0 Helix-hairpin-helix domain DUF2884 PF11101.3 gi|119720182|ref|YP_920677.1| - 0.04 13.2 0.0 0.083 12.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) GrpE PF01025.14 gi|119720182|ref|YP_920677.1| - 0.042 13.3 0.4 9.3 5.7 0.0 2.1 1 1 1 2 2 2 0 GrpE Lge1 PF11488.3 gi|119720182|ref|YP_920677.1| - 0.044 13.9 2.7 0.99 9.6 0.1 2.4 1 1 1 2 2 2 0 Transcriptional regulatory protein LGE1 Hemagglutinin PF00509.13 gi|119720182|ref|YP_920677.1| - 0.045 11.9 0.2 1.2 7.1 0.2 2.0 1 1 1 2 2 2 0 Haemagglutinin COG6 PF06419.6 gi|119720182|ref|YP_920677.1| - 0.045 11.8 0.0 0.054 11.6 0.0 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 MCPsignal PF00015.16 gi|119720182|ref|YP_920677.1| - 0.047 13.2 0.0 0.2 11.1 0.0 1.8 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Hemerythrin PF01814.18 gi|119720182|ref|YP_920677.1| - 0.053 13.6 3.6 2.1 8.4 2.5 2.3 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Syntaxin-6_N PF09177.6 gi|119720182|ref|YP_920677.1| - 0.06 13.7 2.2 0.97 9.8 1.5 2.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DASH_Duo1 PF08651.5 gi|119720182|ref|YP_920677.1| - 0.061 12.9 0.4 3.1 7.4 0.0 2.7 2 1 1 3 3 2 0 DASH complex subunit Duo1 DASH_Dam1 PF08653.5 gi|119720182|ref|YP_920677.1| - 0.062 13.0 0.2 16 5.3 0.0 3.0 1 1 3 4 4 4 0 DASH complex subunit Dam1 DUF2130 PF09903.4 gi|119720182|ref|YP_920677.1| - 0.066 11.9 0.7 0.25 10.0 0.5 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) DegS PF05384.6 gi|119720182|ref|YP_920677.1| - 0.071 12.3 6.3 0.5 9.5 2.7 2.6 2 1 0 2 2 1 0 Sensor protein DegS CorA PF01544.13 gi|119720182|ref|YP_920677.1| - 0.071 12.1 6.2 1.7 7.5 0.1 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Mod_r PF07200.8 gi|119720182|ref|YP_920677.1| - 0.074 12.9 0.2 1.2 9.0 0.0 1.9 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein BRI3BP PF14965.1 gi|119720182|ref|YP_920677.1| - 0.075 12.4 2.6 4.1 6.7 0.7 2.9 1 1 1 2 2 2 0 Negative regulator of p53/TP53 Fungal_trans_2 PF11951.3 gi|119720182|ref|YP_920677.1| - 0.082 11.4 0.7 0.16 10.5 0.5 1.5 1 1 0 1 1 1 0 Fungal specific transcription factor domain TelA PF05816.6 gi|119720182|ref|YP_920677.1| - 0.082 11.5 0.7 0.16 10.6 0.4 1.4 1 1 0 1 1 1 0 Toxic anion resistance protein (TelA) DUF3407 PF11887.3 gi|119720182|ref|YP_920677.1| - 0.084 12.1 0.1 0.14 11.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3407) Enkurin PF13864.1 gi|119720182|ref|YP_920677.1| - 0.085 13.0 2.0 1.3 9.3 1.4 2.5 1 1 0 1 1 1 0 Calmodulin-binding MtrG PF04210.8 gi|119720182|ref|YP_920677.1| - 0.088 12.4 7.8 10 5.8 0.3 4.0 1 1 3 4 4 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF2959 PF11172.3 gi|119720182|ref|YP_920677.1| - 0.09 12.5 0.2 20 4.8 0.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) DUF1640 PF07798.6 gi|119720182|ref|YP_920677.1| - 0.092 12.7 2.1 0.2 11.6 1.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Cep57_CLD PF14073.1 gi|119720182|ref|YP_920677.1| - 0.096 12.5 0.2 0.91 9.3 0.1 2.0 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Vps53_N PF04100.7 gi|119720182|ref|YP_920677.1| - 0.1 11.3 0.8 0.11 11.2 0.5 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal TACC PF05010.9 gi|119720182|ref|YP_920677.1| - 0.1 12.3 0.1 0.31 10.7 0.0 1.8 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) DASH_Spc19 PF08287.6 gi|119720182|ref|YP_920677.1| - 0.11 12.1 3.7 2.5 7.7 0.1 2.9 1 1 2 3 3 3 0 Spc19 Macoilin PF09726.4 gi|119720182|ref|YP_920677.1| - 0.12 10.6 0.5 0.14 10.4 0.4 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF4515 PF14988.1 gi|119720182|ref|YP_920677.1| - 0.12 11.9 0.7 2.4 7.7 0.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) Sec34 PF04136.10 gi|119720182|ref|YP_920677.1| - 0.13 11.9 0.0 2.8 7.6 0.0 2.0 1 1 1 2 2 2 0 Sec34-like family PEARLI-4 PF05278.7 gi|119720182|ref|YP_920677.1| - 0.14 11.4 1.3 0.49 9.7 0.7 1.8 1 1 1 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF641 PF04859.7 gi|119720182|ref|YP_920677.1| - 0.16 11.6 0.7 3.6 7.3 0.1 2.2 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) Striatin PF08232.7 gi|119720182|ref|YP_920677.1| - 0.19 12.0 2.2 2.4 8.4 1.5 2.2 1 1 0 1 1 1 0 Striatin family Phlebovirus_NSM PF07246.6 gi|119720182|ref|YP_920677.1| - 0.2 10.8 1.9 0.26 10.4 0.7 1.5 1 1 1 2 2 1 0 Phlebovirus nonstructural protein NS-M Kinetocho_Slk19 PF12709.2 gi|119720182|ref|YP_920677.1| - 0.2 11.7 0.8 15 5.7 0.2 2.9 1 1 1 2 2 2 0 Central kinetochore-associated EMP24_GP25L PF01105.19 gi|119720182|ref|YP_920677.1| - 0.2 11.3 0.5 3 7.5 0.3 2.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD NBP1 PF08537.5 gi|119720182|ref|YP_920677.1| - 0.21 10.7 3.3 4.8 6.2 2.3 2.2 1 1 0 1 1 1 0 Fungal Nap binding protein NBP1 DUF2205 PF10224.4 gi|119720182|ref|YP_920677.1| - 0.29 10.7 2.4 2.4 7.8 0.9 2.4 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) FliT PF05400.8 gi|119720182|ref|YP_920677.1| - 0.31 11.4 4.5 0.31 11.4 1.5 2.1 1 1 1 2 2 2 0 Flagellar protein FliT ALIX_LYPXL_bnd PF13949.1 gi|119720182|ref|YP_920677.1| - 0.34 9.8 3.8 0.41 9.5 2.7 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF1003 PF06210.6 gi|119720182|ref|YP_920677.1| - 0.52 10.2 4.0 1.4 8.8 0.5 2.4 1 1 1 3 3 2 0 Protein of unknown function (DUF1003) Bombinin PF05298.6 gi|119720182|ref|YP_920677.1| - 1.1 8.6 3.8 1.9 7.9 0.4 2.3 1 1 1 2 2 2 0 Bombinin MutS_IV PF05190.13 gi|119720182|ref|YP_920677.1| - 1.2 9.3 4.8 7 6.8 0.7 2.8 1 1 0 2 2 2 0 MutS family domain IV NTP_transf_2 PF01909.18 gi|119720183|ref|YP_920678.1| - 1.5e-06 28.3 0.1 2.7e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain UPF0254 PF06787.6 gi|119720183|ref|YP_920678.1| - 0.15 11.6 0.2 0.31 10.5 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) PLDc_2 PF13091.1 gi|119720184|ref|YP_920679.1| - 0.0032 17.2 0.0 0.007 16.1 0.0 1.5 2 0 0 2 2 2 1 PLD-like domain DUF1212 PF06738.7 gi|119720186|ref|YP_920681.1| - 0.43 10.0 3.6 0.25 10.7 1.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) KRAB PF01352.22 gi|119720188|ref|YP_920683.1| - 1.2 8.6 3.3 0.4 10.1 0.3 1.8 2 1 0 2 2 2 0 KRAB box Ank_2 PF12796.2 gi|119720190|ref|YP_920685.1| - 6.2e-301 971.9 41.7 1.4e-29 102.2 0.1 13.9 1 1 17 18 18 18 18 Ankyrin repeats (3 copies) Ank PF00023.25 gi|119720190|ref|YP_920685.1| - 7.1e-244 776.6 33.3 4.8e-14 51.3 0.0 26.1 25 2 0 25 25 25 25 Ankyrin repeat Ank_4 PF13637.1 gi|119720190|ref|YP_920685.1| - 8.3e-194 625.0 30.0 4.9e-16 58.7 0.0 22.6 4 4 19 23 23 23 22 Ankyrin repeats (many copies) Ank_5 PF13857.1 gi|119720190|ref|YP_920685.1| - 1.6e-184 593.8 62.0 2.3e-17 62.5 0.1 18.8 7 5 11 19 19 19 19 Ankyrin repeats (many copies) Ank_3 PF13606.1 gi|119720190|ref|YP_920685.1| - 7.6e-174 545.8 28.0 1.3e-09 37.3 0.0 25.3 24 1 1 25 25 25 21 Ankyrin repeat Shigella_OspC PF06128.6 gi|119720190|ref|YP_920685.1| - 1.3e-07 31.4 0.1 5 6.5 0.0 7.3 6 2 2 8 8 8 2 Shigella flexneri OspC protein DUF1110 PF06533.7 gi|119720190|ref|YP_920685.1| - 0.054 13.3 14.6 12 5.6 0.0 8.0 8 2 0 9 9 9 0 Protein of unknown function (DUF1110) AMNp_N PF10423.4 gi|119720190|ref|YP_920685.1| - 0.19 11.2 0.0 44 3.6 0.0 3.4 3 1 1 4 4 4 0 Bacterial AMP nucleoside phosphorylase N-terminus Thermopsin PF05317.6 gi|119720191|ref|YP_920686.1| - 3.1e-79 265.6 2.2 5e-79 264.9 1.5 1.3 1 0 0 1 1 1 1 Thermopsin S4_2 PF13275.1 gi|119720191|ref|YP_920686.1| - 0.12 11.9 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 S4 domain UnbV_ASPIC PF07593.7 gi|119720191|ref|YP_920686.1| - 0.28 10.9 1.7 18 5.0 0.0 3.7 4 0 0 4 4 4 0 ASPIC and UnbV RAMPs PF03787.10 gi|119720193|ref|YP_920688.1| - 9.3e-24 84.4 0.0 1.7e-23 83.5 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|119720194|ref|YP_920689.1| - 4.4e-29 101.8 0.0 5.8e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.5 gi|119720194|ref|YP_920689.1| - 0.00034 20.1 0.0 0.00046 19.7 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) RAMPs PF03787.10 gi|119720195|ref|YP_920690.1| - 2.8e-06 27.3 0.0 4.2e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily HD PF01966.17 gi|119720196|ref|YP_920691.1| - 4.4e-08 33.1 6.5 1.1e-07 31.8 2.9 2.7 2 1 0 2 2 2 1 HD domain HDOD PF08668.7 gi|119720196|ref|YP_920691.1| - 0.0073 15.5 0.1 0.017 14.4 0.0 1.6 1 0 0 1 1 1 1 HDOD domain DUF3435 PF11917.3 gi|119720196|ref|YP_920691.1| - 0.079 11.6 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) DUF3039 PF11238.3 gi|119720196|ref|YP_920691.1| - 0.093 12.1 0.2 0.22 11.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) RAMPs PF03787.10 gi|119720197|ref|YP_920692.1| - 2.2e-08 34.2 0.0 3.3e-08 33.6 0.0 1.3 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|119720198|ref|YP_920693.1| - 3.3e-05 23.8 0.2 0.0038 17.1 0.2 2.2 1 1 0 1 1 1 1 RAMP superfamily Root_cap PF06830.6 gi|119720198|ref|YP_920693.1| - 0.068 13.0 0.0 0.45 10.4 0.0 2.2 2 0 0 2 2 2 0 Root cap RAMPs PF03787.10 gi|119720199|ref|YP_920694.1| - 2.5e-16 60.1 0.0 3.9e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.5 gi|119720199|ref|YP_920694.1| - 0.0073 15.7 0.0 0.0088 15.5 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) Cu-oxidase PF00394.17 gi|119720202|ref|YP_920697.1| - 0.0019 18.1 0.0 1.9 8.3 0.0 2.6 2 0 0 2 2 2 2 Multicopper oxidase DUF4177 PF13783.1 gi|119720202|ref|YP_920697.1| - 0.0059 16.2 0.0 0.15 11.7 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4177) Glyco_hydro_20 PF00728.17 gi|119720203|ref|YP_920698.1| - 1.5e-36 126.3 0.0 4.7e-36 124.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain T2SS-T3SS_pil_N PF13629.1 gi|119720204|ref|YP_920699.1| - 0.016 14.7 7.5 2.2 7.8 0.2 3.7 3 0 0 3 3 3 0 Pilus formation protein N terminal region DUF3113 PF11310.3 gi|119720204|ref|YP_920699.1| - 0.055 13.1 0.0 7.4 6.3 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3113) HEPN PF05168.9 gi|119720206|ref|YP_920701.1| - 1.2e-19 70.3 1.6 1.3e-19 70.2 1.1 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|119720207|ref|YP_920702.1| - 1.8e-11 44.1 0.1 2.3e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|119720207|ref|YP_920702.1| - 0.00096 19.1 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.8 gi|119720207|ref|YP_920702.1| - 0.078 12.5 0.0 0.087 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF3437 PF11919.3 gi|119720208|ref|YP_920703.1| - 0.04 13.6 0.1 0.049 13.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3437) MFS_1 PF07690.11 gi|119720209|ref|YP_920704.1| - 3.5e-26 91.7 40.8 3.4e-23 81.9 21.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|119720209|ref|YP_920704.1| - 0.047 13.4 0.5 0.047 13.4 0.3 2.8 4 0 0 4 4 4 0 MFS_1 like family Acetyltransf_6 PF13480.1 gi|119720209|ref|YP_920704.1| - 0.055 13.4 2.6 0.14 12.1 0.1 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF1049 PF06305.6 gi|119720209|ref|YP_920704.1| - 5 6.6 9.8 3.2 7.3 0.0 4.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1049) TPR_12 PF13424.1 gi|119720211|ref|YP_920706.1| - 0.0035 17.2 3.6 0.009 15.9 0.2 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|119720211|ref|YP_920706.1| - 0.018 14.8 7.0 0.084 12.8 0.2 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|119720211|ref|YP_920706.1| - 2.6 7.7 6.9 1.3 8.7 0.3 3.3 3 0 0 3 3 3 0 TPR repeat UPF0175 PF03683.8 gi|119720213|ref|YP_920708.1| - 0.00014 21.2 2.4 0.0018 17.7 1.7 2.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) PaREP1 PF05942.6 gi|119720214|ref|YP_920709.1| - 1.3e-21 76.6 4.8 1.5e-21 76.4 2.5 1.7 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF3141 PF11339.3 gi|119720214|ref|YP_920709.1| - 0.026 12.8 0.0 0.033 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) CoA_transf_3 PF02515.12 gi|119720214|ref|YP_920709.1| - 0.099 11.8 0.6 2 7.6 0.0 2.5 2 1 0 2 2 2 0 CoA-transferase family III potato_inhibit PF00280.13 gi|119720214|ref|YP_920709.1| - 0.3 11.2 2.0 0.41 10.8 0.3 1.9 2 0 0 2 2 2 0 Potato inhibitor I family DUF2276 PF10040.4 gi|119720215|ref|YP_920710.1| - 1.5e-17 63.9 0.0 2.3e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Aldolase_2 PF10120.4 gi|119720216|ref|YP_920711.1| - 2.8e-25 88.6 0.0 3.1e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Putative aldolase Aldolase_2 PF10120.4 gi|119720217|ref|YP_920712.1| - 8.3e-14 51.3 0.0 9.2e-14 51.1 0.0 1.0 1 0 0 1 1 1 1 Putative aldolase Transglut_core3 PF13471.1 gi|119720218|ref|YP_920713.1| - 0.012 15.4 0.1 0.014 15.2 0.1 1.1 1 0 0 1 1 1 0 Transglutaminase-like superfamily QRPTase_C PF01729.14 gi|119720219|ref|YP_920714.1| - 2.9e-14 52.9 0.0 3.3e-14 52.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain TMP-TENI PF02581.12 gi|119720219|ref|YP_920714.1| - 0.0013 17.8 0.9 0.04 13.0 0.6 2.0 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI Aldolase PF01081.14 gi|119720219|ref|YP_920714.1| - 0.0099 15.0 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 KDPG and KHG aldolase Ribul_P_3_epim PF00834.14 gi|119720219|ref|YP_920714.1| - 0.016 14.3 0.1 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Gp_dh_N PF00044.19 gi|119720219|ref|YP_920714.1| - 0.11 12.5 0.1 1.2 9.0 0.1 1.9 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Multi_Drug_Res PF00893.14 gi|119720219|ref|YP_920714.1| - 0.11 13.0 0.0 0.18 12.2 0.0 1.4 1 1 0 1 1 1 0 Small Multidrug Resistance protein Cas_Cmr3 PF09700.5 gi|119720220|ref|YP_920715.1| - 7.1e-11 42.1 0.1 3.5e-05 23.3 0.0 2.2 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) Cas_Cas5d PF09704.5 gi|119720220|ref|YP_920715.1| - 0.094 12.3 0.6 0.37 10.3 0.1 1.9 1 1 0 2 2 2 0 CRISPR-associated protein (Cas_Cas5) DUF3692 PF12469.3 gi|119720221|ref|YP_920716.1| - 3.7e-26 91.6 0.0 1e-25 90.2 0.0 1.8 1 0 0 1 1 1 1 CRISPR-associated protein zf-dskA_traR PF01258.12 gi|119720221|ref|YP_920716.1| - 4.9 6.9 6.7 24 4.7 0.2 3.0 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger RAMPs PF03787.10 gi|119720222|ref|YP_920717.1| - 1.4e-09 38.1 0.2 8.7e-09 35.5 0.2 2.1 1 1 0 1 1 1 1 RAMP superfamily DUF2276 PF10040.4 gi|119720222|ref|YP_920717.1| - 0.076 13.2 1.5 0.25 11.5 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2276) RAMPs PF03787.10 gi|119720223|ref|YP_920718.1| - 0.029 14.2 0.1 0.55 10.0 0.1 2.3 1 1 0 1 1 1 0 RAMP superfamily Cas_Cmr5 PF09701.5 gi|119720224|ref|YP_920719.1| - 6.9e-06 26.2 0.0 8.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.10 gi|119720225|ref|YP_920720.1| - 7.7e-17 61.8 0.0 1.1e-16 61.3 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily Cas_Cas1 PF01867.11 gi|119720226|ref|YP_920721.1| - 1.9e-37 128.9 0.0 2.6e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|119720227|ref|YP_920722.1| - 2.8e-14 52.9 0.0 3.5e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 PaaX_C PF08223.6 gi|119720227|ref|YP_920722.1| - 0.0034 17.1 0.0 0.0034 17.1 0.0 1.1 1 0 0 1 1 1 1 PaaX-like protein C-terminal domain Cas_Cas2CT1978 PF09707.5 gi|119720227|ref|YP_920722.1| - 0.012 15.5 0.1 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas2CT1978) DEAD PF00270.24 gi|119720228|ref|YP_920723.1| - 2.7e-07 30.2 0.0 0.00028 20.4 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|119720228|ref|YP_920723.1| - 0.011 15.5 0.0 0.04 13.7 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DDE_Tnp_ISAZ013 PF07592.6 gi|119720230|ref|YP_920725.1| - 0.025 13.3 0.0 0.044 12.5 0.0 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DUF1019 PF06254.6 gi|119720231|ref|YP_920726.1| - 0.013 15.6 0.1 0.024 14.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1019) PCIF1_WW PF12237.3 gi|119720231|ref|YP_920726.1| - 0.058 12.6 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Phosphorylated CTD interacting factor 1 WW domain DUF410 PF04190.8 gi|119720232|ref|YP_920727.1| - 0.045 13.2 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF410) ABC_tran PF00005.22 gi|119720233|ref|YP_920728.1| - 4.4e-18 65.9 0.0 6.3e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720233|ref|YP_920728.1| - 1.3e-08 35.2 0.0 5e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119720233|ref|YP_920728.1| - 0.00011 22.2 0.0 0.00013 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|119720233|ref|YP_920728.1| - 0.00012 21.5 0.0 0.0002 20.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|119720233|ref|YP_920728.1| - 0.0014 18.9 0.1 0.0021 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|119720233|ref|YP_920728.1| - 0.0035 18.1 0.1 0.004 17.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|119720233|ref|YP_920728.1| - 0.0049 17.0 0.0 0.0077 16.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|119720233|ref|YP_920728.1| - 0.0057 16.2 0.0 0.0074 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|119720233|ref|YP_920728.1| - 0.0061 16.5 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|119720233|ref|YP_920728.1| - 0.0063 15.7 0.0 0.0083 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|119720233|ref|YP_920728.1| - 0.0068 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|119720233|ref|YP_920728.1| - 0.0069 16.2 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|119720233|ref|YP_920728.1| - 0.0069 16.6 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|119720233|ref|YP_920728.1| - 0.013 14.9 0.1 0.016 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|119720233|ref|YP_920728.1| - 0.014 15.0 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|119720233|ref|YP_920728.1| - 0.015 14.4 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|119720233|ref|YP_920728.1| - 0.025 14.7 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|119720233|ref|YP_920728.1| - 0.035 13.7 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.17 gi|119720233|ref|YP_920728.1| - 0.047 13.1 0.1 0.077 12.4 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|119720233|ref|YP_920728.1| - 0.062 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|119720233|ref|YP_920728.1| - 0.069 12.9 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain RNA_helicase PF00910.17 gi|119720233|ref|YP_920728.1| - 0.075 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase SbcCD_C PF13558.1 gi|119720233|ref|YP_920728.1| - 0.09 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|119720233|ref|YP_920728.1| - 0.092 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|119720233|ref|YP_920728.1| - 0.1 12.5 0.0 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|119720233|ref|YP_920728.1| - 0.13 11.6 0.0 0.4 10.0 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|119720233|ref|YP_920728.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 NTPase DUF3329 PF11808.3 gi|119720234|ref|YP_920729.1| - 0.037 14.1 1.2 0.037 14.1 0.8 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3329) ATPase_gene1 PF09527.5 gi|119720234|ref|YP_920729.1| - 7.4 6.4 9.3 0.13 12.0 0.7 2.2 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF2562 PF10814.3 gi|119720236|ref|YP_920731.1| - 0.06 13.3 1.5 0.093 12.6 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2562) Bax1-I PF01027.15 gi|119720236|ref|YP_920731.1| - 2.8 7.4 7.8 6.8 6.2 5.4 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 ABC2_membrane_2 PF12679.2 gi|119720237|ref|YP_920732.1| - 1.2e-32 112.9 21.4 1.5e-32 112.6 14.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720237|ref|YP_920732.1| - 1.8e-13 50.1 14.5 1.8e-13 50.1 10.0 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|119720237|ref|YP_920732.1| - 1e-06 28.0 14.5 1e-06 28.0 10.0 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|119720237|ref|YP_920732.1| - 0.0011 18.2 3.1 0.0011 18.2 2.1 2.6 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|119720238|ref|YP_920733.1| - 6.4e-29 101.0 0.0 1.1e-28 100.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720238|ref|YP_920733.1| - 2.6e-12 47.2 1.8 2.5e-05 24.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|119720238|ref|YP_920733.1| - 0.00045 20.5 0.0 0.00084 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720238|ref|YP_920733.1| - 0.0019 17.6 0.1 0.0046 16.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|119720238|ref|YP_920733.1| - 0.0035 17.5 0.3 0.15 12.1 0.1 2.7 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|119720238|ref|YP_920733.1| - 0.0035 16.7 0.3 0.047 13.0 0.0 2.5 3 0 0 3 3 3 1 AAA domain Arch_ATPase PF01637.13 gi|119720238|ref|YP_920733.1| - 0.0042 16.8 0.3 0.03 14.0 0.0 2.3 2 1 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|119720238|ref|YP_920733.1| - 0.0085 16.9 0.1 0.031 15.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|119720238|ref|YP_920733.1| - 0.015 15.0 0.2 0.095 12.4 0.0 2.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|119720238|ref|YP_920733.1| - 0.016 15.1 0.1 3.4 7.5 0.0 2.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|119720238|ref|YP_920733.1| - 0.022 14.4 0.1 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|119720238|ref|YP_920733.1| - 0.029 12.8 0.0 0.05 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|119720238|ref|YP_920733.1| - 0.036 14.0 0.8 0.17 11.8 0.0 2.2 1 1 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.14 gi|119720238|ref|YP_920733.1| - 0.038 13.2 0.0 0.23 10.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|119720238|ref|YP_920733.1| - 0.071 12.9 0.1 1.2 8.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|119720238|ref|YP_920733.1| - 0.071 12.0 1.2 0.42 9.4 0.0 2.6 3 1 0 3 3 3 0 Type II/IV secretion system protein AAA_15 PF13175.1 gi|119720238|ref|YP_920733.1| - 0.11 11.5 0.0 0.86 8.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain RecA PF00154.16 gi|119720238|ref|YP_920733.1| - 0.11 11.5 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein Miro PF08477.8 gi|119720238|ref|YP_920733.1| - 0.12 12.9 0.1 1.8 9.1 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein KaiC PF06745.8 gi|119720238|ref|YP_920733.1| - 0.12 11.4 0.1 2.2 7.3 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_10 PF12846.2 gi|119720238|ref|YP_920733.1| - 0.21 10.9 0.6 0.48 9.8 0.2 1.7 2 0 0 2 2 2 0 AAA-like domain NPCBM_assoc PF10633.4 gi|119720239|ref|YP_920734.1| - 8.1e-29 99.5 1.8 1.3e-09 37.9 0.1 4.6 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.1 gi|119720239|ref|YP_920734.1| - 3.9e-14 52.4 5.3 1.4e-10 41.0 0.0 5.7 5 1 0 5 5 5 1 Carboxypeptidase regulatory-like domain FixG_C PF11614.3 gi|119720239|ref|YP_920734.1| - 1.9e-08 34.4 0.0 0.34 11.0 0.0 4.6 4 0 0 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF4480 PF13715.1 gi|119720239|ref|YP_920734.1| - 1e-06 28.6 0.3 3.3e-05 23.8 0.0 3.4 3 1 0 3 3 3 1 Domain of unknown function (DUF4480) CARDB PF07705.6 gi|119720239|ref|YP_920734.1| - 1.8e-05 24.6 2.2 0.0092 16.0 0.3 4.0 4 0 0 4 4 4 1 CARDB phage_tail_N PF08400.5 gi|119720239|ref|YP_920734.1| - 0.0012 18.5 1.4 0.036 13.7 0.0 3.4 4 0 0 4 4 4 1 Prophage tail fibre N-terminal DUF1416 PF07210.7 gi|119720239|ref|YP_920734.1| - 0.01 15.4 0.0 0.036 13.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1416) BsuPI PF12690.2 gi|119720239|ref|YP_920734.1| - 0.043 13.5 0.0 17 5.2 0.0 3.5 3 0 0 3 3 3 0 Intracellular proteinase inhibitor DUF4352 PF11611.3 gi|119720239|ref|YP_920734.1| - 0.12 12.5 0.3 1.7 8.8 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4352) DUF2393 PF09624.5 gi|119720239|ref|YP_920734.1| - 0.13 11.7 0.1 8.6 5.8 0.2 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF2393) DUF11 PF01345.13 gi|119720239|ref|YP_920734.1| - 2.9 8.0 7.0 2.1 8.4 0.2 3.6 4 0 0 4 4 4 0 Domain of unknown function DUF11 PaREP1 PF05942.6 gi|119720240|ref|YP_920735.1| - 3.7e-07 30.0 6.9 5.7e-07 29.3 4.8 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HR1 PF02185.11 gi|119720240|ref|YP_920735.1| - 0.079 12.7 1.5 10 5.9 0.0 2.9 2 1 0 2 2 2 0 Hr1 repeat HEPN PF05168.9 gi|119720240|ref|YP_920735.1| - 0.12 12.2 4.4 0.2 11.5 3.1 1.4 1 0 0 1 1 1 0 HEPN domain FCD PF07729.7 gi|119720240|ref|YP_920735.1| - 0.22 11.8 5.3 0.46 10.8 2.3 2.2 2 1 0 2 2 2 0 FCD domain NTP_transf_2 PF01909.18 gi|119720241|ref|YP_920736.1| - 1.8e-09 37.7 2.2 3.2e-09 36.9 1.6 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|119720241|ref|YP_920736.1| - 0.027 14.5 0.1 0.28 11.2 0.0 2.0 1 1 1 2 2 2 0 DNA polymerase beta palm Cas_DxTHG PF09455.5 gi|119720243|ref|YP_920738.1| - 1.2e-17 64.1 0.0 4.1e-13 49.2 0.0 2.5 2 1 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family PIN PF01850.16 gi|119720244|ref|YP_920739.1| - 0.017 15.4 0.2 0.028 14.7 0.1 1.3 1 1 0 1 1 1 0 PIN domain Antitoxin-MazE PF04014.13 gi|119720245|ref|YP_920740.1| - 4.9e-11 42.1 0.9 1.1e-10 41.0 0.2 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE DUF458 PF04308.7 gi|119720246|ref|YP_920741.1| - 0.053 13.2 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF458) ELK PF03789.8 gi|119720246|ref|YP_920741.1| - 0.17 11.7 3.4 0.18 11.6 0.5 2.6 3 0 0 3 3 3 0 ELK domain Cas_APE2256 PF09651.5 gi|119720247|ref|YP_920742.1| - 1.2e-40 138.3 0.0 2.1e-40 137.6 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) SlyX PF04102.7 gi|119720248|ref|YP_920743.1| - 3.2e-14 53.0 10.6 2.1e-05 24.8 0.1 4.0 1 1 3 4 4 4 3 SlyX Reo_sigmaC PF04582.7 gi|119720248|ref|YP_920743.1| - 7.6e-10 38.4 9.5 1.1e-06 28.0 1.8 2.1 1 1 1 2 2 2 2 Reovirus sigma C capsid protein TMF_DNA_bd PF12329.3 gi|119720248|ref|YP_920743.1| - 1.6e-09 37.4 17.2 3.1e-05 23.6 2.7 4.0 1 1 4 5 5 5 3 TATA element modulatory factor 1 DNA binding AAA_13 PF13166.1 gi|119720248|ref|YP_920743.1| - 8.5e-09 34.4 2.5 1e-08 34.2 1.7 1.1 1 0 0 1 1 1 1 AAA domain Fib_alpha PF08702.5 gi|119720248|ref|YP_920743.1| - 5.7e-08 33.0 0.6 0.055 13.5 0.2 3.0 1 1 2 3 3 3 2 Fibrinogen alpha/beta chain family DUF16 PF01519.11 gi|119720248|ref|YP_920743.1| - 2.2e-07 31.0 1.1 0.00051 20.2 0.8 3.2 1 1 2 3 3 3 1 Protein of unknown function DUF16 ADIP PF11559.3 gi|119720248|ref|YP_920743.1| - 5.4e-07 29.6 11.5 0.0032 17.3 1.1 3.0 1 1 3 4 4 4 4 Afadin- and alpha -actinin-Binding IncA PF04156.9 gi|119720248|ref|YP_920743.1| - 1.5e-06 27.9 15.8 0.00093 18.8 5.6 2.1 1 1 1 2 2 2 2 IncA protein ATG16 PF08614.6 gi|119720248|ref|YP_920743.1| - 3e-06 27.1 13.3 0.00088 19.1 6.5 2.6 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) BLOC1_2 PF10046.4 gi|119720248|ref|YP_920743.1| - 2e-05 24.6 6.6 1.5 8.9 0.1 4.3 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BRE1 PF08647.6 gi|119720248|ref|YP_920743.1| - 2.8e-05 23.9 11.5 0.00022 21.1 3.5 2.9 1 1 2 3 3 3 1 BRE1 E3 ubiquitin ligase Atg14 PF10186.4 gi|119720248|ref|YP_920743.1| - 7e-05 21.9 13.5 0.022 13.7 6.7 2.1 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 Vac_Fusion PF02346.11 gi|119720248|ref|YP_920743.1| - 0.00015 21.0 9.2 0.45 9.9 0.0 5.2 1 1 4 5 5 5 1 Chordopoxvirus fusion protein Baculo_PEP_C PF04513.7 gi|119720248|ref|YP_920743.1| - 0.0003 20.6 0.6 0.16 11.7 0.3 2.8 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|119720248|ref|YP_920743.1| - 0.00056 19.7 0.1 15 5.5 0.0 3.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Spc24 PF08286.6 gi|119720248|ref|YP_920743.1| - 0.00096 18.8 2.1 0.48 10.1 0.0 3.2 1 1 2 3 3 3 1 Spc24 subunit of Ndc80 AAA_27 PF13514.1 gi|119720248|ref|YP_920743.1| - 0.00096 16.9 22.8 0.0015 16.3 15.8 1.2 1 0 0 1 1 1 1 AAA domain ALIX_LYPXL_bnd PF13949.1 gi|119720248|ref|YP_920743.1| - 0.0015 17.5 10.3 0.0033 16.4 7.2 1.7 1 1 0 1 1 1 1 ALIX V-shaped domain binding to HIV RRF_GI PF12614.3 gi|119720248|ref|YP_920743.1| - 0.0023 17.7 6.9 3.3 7.5 0.7 3.9 1 1 4 5 5 5 0 Ribosome recycling factor XhlA PF10779.4 gi|119720248|ref|YP_920743.1| - 0.0023 17.7 11.8 0.47 10.3 1.4 3.7 1 1 2 3 3 3 1 Haemolysin XhlA MAD PF05557.8 gi|119720248|ref|YP_920743.1| - 0.0027 15.8 8.5 0.0049 15.0 5.9 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein TMCO5 PF14992.1 gi|119720248|ref|YP_920743.1| - 0.0029 16.8 5.7 0.0082 15.3 3.6 1.7 1 1 1 2 2 2 1 TMCO5 family FadA PF09403.5 gi|119720248|ref|YP_920743.1| - 0.0036 17.3 10.2 0.0049 16.8 1.6 3.6 2 1 2 4 4 3 1 Adhesion protein FadA DUF2730 PF10805.3 gi|119720248|ref|YP_920743.1| - 0.0041 16.8 7.1 0.59 9.8 0.1 3.5 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) Nsp1_C PF05064.8 gi|119720248|ref|YP_920743.1| - 0.0064 16.1 2.0 0.28 10.8 0.7 2.4 1 1 1 2 2 2 2 Nsp1-like C-terminal region ERM PF00769.14 gi|119720248|ref|YP_920743.1| - 0.0065 16.0 20.9 0.15 11.6 7.8 2.1 1 1 1 2 2 2 2 Ezrin/radixin/moesin family Flagellin_C PF00700.16 gi|119720248|ref|YP_920743.1| - 0.0068 16.5 3.8 5.6 7.1 0.0 3.4 1 1 1 3 3 3 0 Bacterial flagellin C-terminal helical region Spc7 PF08317.6 gi|119720248|ref|YP_920743.1| - 0.01 14.5 10.0 0.49 9.0 5.6 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein MbeD_MobD PF04899.7 gi|119720248|ref|YP_920743.1| - 0.01 15.7 4.9 0.82 9.6 0.0 3.8 1 1 2 3 3 3 0 MbeD/MobD like DUF4463 PF14703.1 gi|119720248|ref|YP_920743.1| - 0.011 16.1 15.7 2.5 8.6 0.2 4.4 1 1 4 5 5 5 0 Domain of unknown function (DUF4463) DUF4618 PF15397.1 gi|119720248|ref|YP_920743.1| - 0.012 15.0 4.6 0.053 12.8 3.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) FlaC_arch PF05377.6 gi|119720248|ref|YP_920743.1| - 0.012 15.4 0.5 48 3.9 0.0 4.1 2 1 2 4 4 4 0 Flagella accessory protein C (FlaC) FliJ PF02050.11 gi|119720248|ref|YP_920743.1| - 0.012 15.6 15.8 0.073 13.1 4.2 3.7 1 1 2 3 3 3 0 Flagellar FliJ protein DUF2570 PF10828.3 gi|119720248|ref|YP_920743.1| - 0.015 14.9 5.4 0.69 9.5 1.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) Not3 PF04065.10 gi|119720248|ref|YP_920743.1| - 0.017 14.4 6.8 0.27 10.4 2.1 2.3 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Sbi-IV PF11621.3 gi|119720248|ref|YP_920743.1| - 0.02 15.0 17.7 2.8 8.1 0.2 4.6 1 1 2 3 3 3 0 C3 binding domain 4 of IgG-bind protein SBI MutS_III PF05192.13 gi|119720248|ref|YP_920743.1| - 0.023 14.4 7.6 0.047 13.4 5.3 1.7 1 1 0 1 1 1 0 MutS domain III DUF3584 PF12128.3 gi|119720248|ref|YP_920743.1| - 0.023 12.0 15.8 0.033 11.5 11.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Prefoldin_2 PF01920.15 gi|119720248|ref|YP_920743.1| - 0.028 14.1 11.9 2.7 7.7 0.3 3.7 1 1 3 4 4 4 0 Prefoldin subunit COG5 PF10392.4 gi|119720248|ref|YP_920743.1| - 0.039 13.9 7.2 1.1 9.1 1.3 3.2 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DUF641 PF04859.7 gi|119720248|ref|YP_920743.1| - 0.044 13.5 12.0 0.26 11.0 1.3 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) CENP-F_leu_zip PF10473.4 gi|119720248|ref|YP_920743.1| - 0.044 13.6 14.5 2.5 7.9 4.8 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mod_r PF07200.8 gi|119720248|ref|YP_920743.1| - 0.058 13.3 8.4 3.6 7.4 3.8 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein GAS PF13851.1 gi|119720248|ref|YP_920743.1| - 0.064 12.4 9.1 0.59 9.2 0.3 2.5 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Med9 PF07544.8 gi|119720248|ref|YP_920743.1| - 0.064 12.9 11.2 1.2 8.9 0.8 3.8 1 1 3 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 Sec8_exocyst PF04048.9 gi|119720248|ref|YP_920743.1| - 0.069 12.7 2.1 0.44 10.1 0.4 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Herpes_U30 PF04523.8 gi|119720248|ref|YP_920743.1| - 0.079 10.4 5.7 0.27 8.6 3.9 1.6 1 1 0 1 1 1 0 Herpes virus tegument protein U30 DUF1202 PF06717.6 gi|119720248|ref|YP_920743.1| - 0.086 12.1 0.2 5.3 6.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1202) Phage_GP20 PF06810.6 gi|119720248|ref|YP_920743.1| - 0.087 12.2 3.3 0.54 9.6 0.7 2.7 1 1 3 4 4 4 0 Phage minor structural protein GP20 DUF1664 PF07889.7 gi|119720248|ref|YP_920743.1| - 0.1 12.4 4.6 1.2 8.9 1.9 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMPIT PF07851.8 gi|119720248|ref|YP_920743.1| - 0.11 11.5 2.8 1.8 7.5 1.9 2.0 1 1 1 2 2 2 0 TMPIT-like protein Use1 PF09753.4 gi|119720248|ref|YP_920743.1| - 0.12 11.8 6.4 0.86 8.9 0.1 2.8 1 1 1 2 2 2 0 Membrane fusion protein Use1 Cast PF10174.4 gi|119720248|ref|YP_920743.1| - 0.12 10.4 15.4 0.33 8.9 10.7 1.6 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone DUF3818 PF12825.2 gi|119720248|ref|YP_920743.1| - 0.12 11.0 1.5 0.42 9.2 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) Streptin-Immun PF11083.3 gi|119720248|ref|YP_920743.1| - 0.12 12.3 1.9 2.3 8.2 0.8 2.9 1 1 0 2 2 2 0 Lantibiotic streptin immunity protein DUF812 PF05667.6 gi|119720248|ref|YP_920743.1| - 0.12 10.8 14.3 0.55 8.6 9.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF812) FimP PF09766.4 gi|119720248|ref|YP_920743.1| - 0.13 11.2 3.6 0.36 9.8 1.4 2.0 1 1 2 3 3 3 0 Fms-interacting protein TBPIP PF07106.8 gi|119720248|ref|YP_920743.1| - 0.14 11.7 5.2 2.9 7.4 2.1 2.5 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) KxDL PF10241.4 gi|119720248|ref|YP_920743.1| - 0.14 12.0 4.2 0.27 11.1 0.4 2.7 2 1 0 3 3 2 0 Uncharacterized conserved protein FemAB PF02388.11 gi|119720248|ref|YP_920743.1| - 0.16 10.6 3.8 0.34 9.5 2.6 1.6 1 1 0 1 1 1 0 FemAB family BTAD PF03704.12 gi|119720248|ref|YP_920743.1| - 0.17 12.1 34.3 0.33 11.2 7.9 4.2 2 1 2 4 4 3 0 Bacterial transcriptional activator domain DUF972 PF06156.8 gi|119720248|ref|YP_920743.1| - 0.19 12.0 6.0 1.5e+02 2.7 4.9 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF2951 PF11166.3 gi|119720248|ref|YP_920743.1| - 0.22 11.3 1.1 5.5 6.9 0.0 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF2951) V_ATPase_I PF01496.14 gi|119720248|ref|YP_920743.1| - 0.23 9.2 2.9 0.35 8.6 0.9 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family LXG PF04740.7 gi|119720248|ref|YP_920743.1| - 0.24 11.1 2.8 1.4 8.7 1.4 2.0 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF724 PF05266.9 gi|119720248|ref|YP_920743.1| - 0.27 10.8 12.1 0.24 11.0 6.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) PTRF_SDPR PF15237.1 gi|119720248|ref|YP_920743.1| - 0.29 10.4 6.8 0.39 10.0 3.2 2.1 1 1 0 2 2 2 0 PTRF/SDPR family Rootletin PF15035.1 gi|119720248|ref|YP_920743.1| - 0.3 11.0 13.1 1.4 8.8 2.7 2.4 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion CENP-Q PF13094.1 gi|119720248|ref|YP_920743.1| - 0.31 11.0 25.4 1.9 8.5 2.4 3.3 1 1 2 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit TMP_2 PF06791.8 gi|119720248|ref|YP_920743.1| - 0.33 10.5 11.6 0.79 9.2 7.9 1.7 1 1 0 1 1 1 0 Prophage tail length tape measure protein ABC_tran_2 PF12848.2 gi|119720248|ref|YP_920743.1| - 0.33 10.8 16.6 6.5 6.6 1.6 4.2 1 1 3 4 4 4 0 ABC transporter Tweety PF04906.8 gi|119720248|ref|YP_920743.1| - 0.39 9.0 1.3 0.67 8.2 0.7 1.5 1 1 0 1 1 1 0 Tweety Lebercilin PF15619.1 gi|119720248|ref|YP_920743.1| - 0.4 10.0 14.1 5.9 6.2 9.8 2.7 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF1366 PF07104.6 gi|119720248|ref|YP_920743.1| - 0.4 10.3 5.0 0.9 9.1 0.9 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1366) PspA_IM30 PF04012.7 gi|119720248|ref|YP_920743.1| - 0.43 9.8 33.5 6.4 6.0 16.9 2.6 1 1 1 2 2 2 0 PspA/IM30 family DASH_Spc34 PF08657.5 gi|119720248|ref|YP_920743.1| - 0.47 10.0 13.5 0.77 9.3 6.4 2.5 1 1 1 2 2 2 0 DASH complex subunit Spc34 FUSC PF04632.7 gi|119720248|ref|YP_920743.1| - 0.52 8.6 20.9 0.7 8.2 13.8 1.7 2 0 0 2 2 2 0 Fusaric acid resistance protein family DUF4407 PF14362.1 gi|119720248|ref|YP_920743.1| - 0.52 9.2 17.1 0.74 8.7 7.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF148 PF02520.12 gi|119720248|ref|YP_920743.1| - 0.55 10.0 5.3 12 5.6 3.3 2.9 1 1 1 2 2 2 0 Domain of unknown function DUF148 Sulfatase_C PF14707.1 gi|119720248|ref|YP_920743.1| - 0.55 10.5 5.3 1.3 9.2 0.5 3.0 1 1 2 3 3 3 0 C-terminal region of aryl-sulfatase HrpB7 PF09486.5 gi|119720248|ref|YP_920743.1| - 0.57 10.1 38.7 0.14 12.1 7.6 3.6 2 1 2 4 4 3 0 Bacterial type III secretion protein (HrpB7) TPR_MLP1_2 PF07926.7 gi|119720248|ref|YP_920743.1| - 0.62 9.8 14.6 3.6 7.3 4.0 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Herpes_UL17 PF04559.7 gi|119720248|ref|YP_920743.1| - 0.76 8.2 6.7 1.2 7.6 4.6 1.3 1 0 0 1 1 1 0 Herpesvirus UL17 protein APG6 PF04111.7 gi|119720248|ref|YP_920743.1| - 0.77 8.7 13.8 6.9 5.6 6.5 2.5 1 1 2 3 3 3 0 Autophagy protein Apg6 SNARE PF05739.14 gi|119720248|ref|YP_920743.1| - 0.83 9.3 3.8 11 5.7 0.1 3.7 1 1 3 4 4 3 0 SNARE domain Lge1 PF11488.3 gi|119720248|ref|YP_920743.1| - 0.9 9.7 5.8 1.1e+02 3.0 4.0 3.2 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 Bcr-Abl_Oligo PF09036.5 gi|119720248|ref|YP_920743.1| - 0.92 9.5 5.9 1.6e+02 2.3 4.0 3.4 1 1 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain CDC37_N PF03234.9 gi|119720248|ref|YP_920743.1| - 1 9.6 6.3 0.95 9.7 3.4 1.6 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Hemerythrin PF01814.18 gi|119720248|ref|YP_920743.1| - 1 9.4 26.9 2.4 8.3 10.5 2.8 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain HAUS-augmin3 PF14932.1 gi|119720248|ref|YP_920743.1| - 1.4 7.9 13.3 13 4.8 6.5 2.4 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Birna_RdRp PF04197.7 gi|119720248|ref|YP_920743.1| - 1.5 6.7 4.2 2 6.3 2.9 1.1 1 0 0 1 1 1 0 Birnavirus RNA dependent RNA polymerase (VP1) Prefoldin PF02996.12 gi|119720248|ref|YP_920743.1| - 1.6 8.4 12.4 76 2.9 6.9 3.6 1 1 2 3 3 3 0 Prefoldin subunit Mnd1 PF03962.10 gi|119720248|ref|YP_920743.1| - 1.7 8.2 12.0 24 4.5 8.3 2.2 1 1 0 1 1 1 0 Mnd1 family Syntaxin-6_N PF09177.6 gi|119720248|ref|YP_920743.1| - 1.9 8.9 9.1 42 4.6 0.1 2.9 1 1 1 2 2 2 0 Syntaxin 6, N-terminal PMEI PF04043.10 gi|119720248|ref|YP_920743.1| - 1.9 8.3 12.7 1.6 8.6 1.4 2.3 1 1 1 2 2 2 0 Plant invertase/pectin methylesterase inhibitor Tropomyosin PF00261.15 gi|119720248|ref|YP_920743.1| - 1.9 7.4 24.6 2.5 7.1 12.3 2.2 1 1 0 1 1 1 0 Tropomyosin DUF3450 PF11932.3 gi|119720248|ref|YP_920743.1| - 2 7.6 13.4 6 6.0 0.7 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) Orbi_VP5 PF00901.12 gi|119720248|ref|YP_920743.1| - 2 6.5 16.7 1.5 6.8 0.4 2.1 1 1 1 2 2 2 0 Orbivirus outer capsid protein VP5 TMF_TATA_bd PF12325.3 gi|119720248|ref|YP_920743.1| - 2.1 8.1 19.0 3.4 7.4 1.0 3.5 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding Spectrin PF00435.16 gi|119720248|ref|YP_920743.1| - 2.9 8.2 12.3 5 7.4 0.6 3.3 1 1 2 3 3 3 0 Spectrin repeat Kinesin-relat_1 PF12711.2 gi|119720248|ref|YP_920743.1| - 3.4 8.1 10.8 49 4.4 0.2 4.2 1 1 1 4 4 3 0 Kinesin motor Serine_rich PF08824.5 gi|119720248|ref|YP_920743.1| - 3.4 7.3 11.3 4.2 7.0 1.5 2.8 1 1 2 3 3 3 0 Serine rich protein interaction domain PLU-1 PF08429.6 gi|119720248|ref|YP_920743.1| - 3.7 6.3 12.8 8.4 5.1 5.8 2.0 1 1 1 2 2 2 0 PLU-1-like protein zf-C4H2 PF10146.4 gi|119720248|ref|YP_920743.1| - 4.6 7.1 10.3 7.9 6.4 3.8 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein DOG1 PF14144.1 gi|119720248|ref|YP_920743.1| - 4.7 7.3 8.4 27 4.8 0.0 3.8 1 1 1 2 2 1 0 Seed dormancy control DUF4200 PF13863.1 gi|119720248|ref|YP_920743.1| - 5.5 6.9 17.7 6.4 6.7 7.7 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Nup54 PF13874.1 gi|119720248|ref|YP_920743.1| - 6.1 6.4 13.6 8.2 6.0 5.5 2.5 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Exonuc_VII_S PF02609.11 gi|119720248|ref|YP_920743.1| - 7.8 6.3 20.3 8 6.3 1.2 5.8 1 1 2 4 4 4 0 Exonuclease VII small subunit Fmp27_WPPW PF10359.4 gi|119720248|ref|YP_920743.1| - 8.4 4.6 7.2 9.2 4.5 2.3 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Seryl_tRNA_N PF02403.17 gi|119720248|ref|YP_920743.1| - 8.5 6.4 14.6 38 4.3 7.0 2.7 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Vps53_N PF04100.7 gi|119720248|ref|YP_920743.1| - 8.8 4.9 7.6 10 4.7 0.5 2.2 1 1 1 2 2 2 0 Vps53-like, N-terminal CAP_N PF01213.14 gi|119720248|ref|YP_920743.1| - 9.2 5.4 9.9 12 5.0 4.9 2.5 1 1 1 2 2 2 0 Adenylate cyclase associated (CAP) N terminal DUF2317 PF10079.4 gi|119720248|ref|YP_920743.1| - 9.6 4.6 11.6 5.2 5.5 5.8 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) Arch_ATPase PF01637.13 gi|119720249|ref|YP_920744.1| - 2.5e-44 151.7 0.3 3.3e-44 151.3 0.2 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|119720249|ref|YP_920744.1| - 1.2e-07 31.8 0.0 2.3e-07 30.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|119720249|ref|YP_920744.1| - 7.5e-06 26.1 0.0 1.8e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain KAP_NTPase PF07693.9 gi|119720249|ref|YP_920744.1| - 0.001 18.1 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain AAA_14 PF13173.1 gi|119720249|ref|YP_920744.1| - 0.0012 18.7 0.1 0.0096 15.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|119720249|ref|YP_920744.1| - 0.0024 17.9 0.0 0.0046 17.1 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA PF00004.24 gi|119720249|ref|YP_920744.1| - 0.0083 16.3 0.0 0.018 15.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|119720249|ref|YP_920744.1| - 0.028 13.2 0.0 0.073 11.9 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.7 gi|119720249|ref|YP_920744.1| - 0.039 13.0 0.0 0.06 12.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Bac_DnaA PF00308.13 gi|119720249|ref|YP_920744.1| - 0.045 13.3 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein NACHT PF05729.7 gi|119720249|ref|YP_920744.1| - 0.083 12.5 0.0 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|119720249|ref|YP_920744.1| - 0.11 13.3 0.2 0.41 11.4 0.1 2.3 1 1 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|119720249|ref|YP_920744.1| - 0.14 10.5 0.0 0.2 10.1 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein Nbs1_C PF08599.5 gi|119720250|ref|YP_920745.1| - 0.26 11.2 0.4 0.26 11.2 0.3 1.8 2 1 0 2 2 2 0 DNA damage repair protein Nbs1 DUF2191 PF09957.4 gi|119720250|ref|YP_920745.1| - 0.97 9.2 4.0 1.2 8.9 1.7 2.0 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF1537 PF07005.6 gi|119720251|ref|YP_920746.1| - 0.0028 17.3 0.4 0.004 16.8 0.3 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF1537 RHH_3 PF12651.2 gi|119720251|ref|YP_920746.1| - 0.003 17.2 1.2 0.064 13.0 0.1 2.8 2 1 0 2 2 2 1 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|119720251|ref|YP_920746.1| - 0.0087 15.9 7.4 0.021 14.6 1.8 3.0 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family Band_7 PF01145.20 gi|119720251|ref|YP_920746.1| - 0.027 14.3 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family DAO PF01266.19 gi|119720251|ref|YP_920746.1| - 0.098 11.5 0.7 0.12 11.2 0.5 1.0 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF2191 PF09957.4 gi|119720251|ref|YP_920746.1| - 0.36 10.6 2.0 3 7.7 1.4 2.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF917 PF06032.7 gi|119720252|ref|YP_920747.1| - 3.7e-90 302.0 0.5 4.4e-90 301.7 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) DUF4177 PF13783.1 gi|119720253|ref|YP_920748.1| - 0.069 12.7 0.0 0.55 9.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4177) AP_endonuc_2 PF01261.19 gi|119720254|ref|YP_920749.1| - 3.3e-27 95.1 0.5 4.4e-27 94.7 0.4 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|119720254|ref|YP_920749.1| - 0.00037 19.9 0.0 0.00078 18.9 0.0 1.5 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus Amidohydro_2 PF04909.9 gi|119720254|ref|YP_920749.1| - 0.091 12.3 7.2 0.86 9.1 0.3 2.3 1 1 1 2 2 2 0 Amidohydrolase M20_dimer PF07687.9 gi|119720255|ref|YP_920750.1| - 3.1e-07 30.1 0.0 1e-06 28.4 0.0 1.9 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.23 gi|119720255|ref|YP_920750.1| - 3.2e-07 30.0 0.4 8.1e-07 28.7 0.3 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Abi PF02517.11 gi|119720256|ref|YP_920751.1| - 4.4e-06 26.7 12.3 4.4e-06 26.7 8.6 2.7 2 1 0 2 2 2 1 CAAX protease self-immunity DEAD PF00270.24 gi|119720257|ref|YP_920752.1| - 7.5e-30 103.6 0.0 7.3e-29 100.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|119720257|ref|YP_920752.1| - 8.2e-12 44.8 0.0 2.7e-11 43.1 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|119720257|ref|YP_920752.1| - 4.7e-06 26.5 0.0 9.4e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.6 gi|119720257|ref|YP_920752.1| - 0.0043 16.7 0.0 0.014 15.1 0.0 2.0 1 1 0 1 1 1 1 DEAD/H associated SNF2_N PF00176.18 gi|119720257|ref|YP_920752.1| - 0.013 14.3 0.0 0.019 13.7 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|119720257|ref|YP_920752.1| - 0.11 12.6 0.0 0.3 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain HD PF01966.17 gi|119720258|ref|YP_920753.1| - 1.6e-06 28.0 0.7 2.4e-06 27.5 0.5 1.4 1 0 0 1 1 1 1 HD domain DEAD PF00270.24 gi|119720259|ref|YP_920754.1| - 1.1e-13 50.9 0.0 2e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|119720259|ref|YP_920754.1| - 1.9e-05 24.3 0.0 3.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|119720259|ref|YP_920754.1| - 0.00044 19.9 0.5 0.00044 19.9 0.3 3.0 3 0 0 3 3 3 1 Part of AAA domain ResIII PF04851.10 gi|119720259|ref|YP_920754.1| - 0.048 13.4 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|119720259|ref|YP_920754.1| - 0.12 11.1 0.0 0.49 9.1 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain Cas_Csa4 PF09703.5 gi|119720260|ref|YP_920755.1| - 1.8e-110 369.3 0.0 2.1e-110 369.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) DevR PF01905.11 gi|119720261|ref|YP_920756.1| - 5e-76 255.1 0.0 5.9e-76 254.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 DUF4627 PF15425.1 gi|119720262|ref|YP_920757.1| - 0.012 15.0 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4627) Cas_Csa5 PF09702.5 gi|119720262|ref|YP_920757.1| - 0.056 13.5 0.1 0.18 11.8 0.0 1.8 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) MarR_2 PF12802.2 gi|119720263|ref|YP_920758.1| - 5.5e-09 35.5 0.2 2e-08 33.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|119720263|ref|YP_920758.1| - 2.6e-08 33.3 0.0 3.7e-07 29.6 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|119720263|ref|YP_920758.1| - 3.9e-07 29.6 0.0 6.7e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|119720263|ref|YP_920758.1| - 7.6e-07 28.7 0.0 1.4e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|119720263|ref|YP_920758.1| - 8.9e-06 25.0 0.0 1.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|119720263|ref|YP_920758.1| - 6.3e-05 22.6 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|119720263|ref|YP_920758.1| - 8.7e-05 22.2 0.0 0.00018 21.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|119720263|ref|YP_920758.1| - 0.0013 18.9 0.0 0.018 15.3 0.0 2.7 2 1 1 3 3 3 1 Winged helix DNA-binding domain HemN_C PF06969.11 gi|119720263|ref|YP_920758.1| - 0.0018 18.3 0.1 0.0051 16.8 0.0 1.9 1 0 0 1 1 1 1 HemN C-terminal domain HTH_45 PF14947.1 gi|119720263|ref|YP_920758.1| - 0.0063 16.2 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|119720263|ref|YP_920758.1| - 0.008 15.9 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|119720263|ref|YP_920758.1| - 0.018 14.9 0.0 0.054 13.4 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.1 gi|119720263|ref|YP_920758.1| - 0.051 13.1 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2250 PF10007.4 gi|119720263|ref|YP_920758.1| - 0.055 13.3 0.0 0.092 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|119720263|ref|YP_920758.1| - 0.06 12.9 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.1 gi|119720263|ref|YP_920758.1| - 0.074 12.7 0.0 0.22 11.2 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|119720263|ref|YP_920758.1| - 0.079 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.1 gi|119720263|ref|YP_920758.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1626 PF07788.6 gi|119720264|ref|YP_920759.1| - 1.6e-27 95.0 0.9 2.6e-27 94.3 0.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|119720264|ref|YP_920759.1| - 5.8e-08 32.4 13.0 4.5e-07 29.5 9.0 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) DUF4200 PF13863.1 gi|119720264|ref|YP_920759.1| - 0.0083 16.0 6.1 0.013 15.4 4.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) Peptidase_S24 PF00717.18 gi|119720264|ref|YP_920759.1| - 0.017 14.7 0.3 0.035 13.7 0.2 1.6 1 0 0 1 1 1 0 Peptidase S24-like ARGLU PF15346.1 gi|119720264|ref|YP_920759.1| - 0.073 12.8 10.0 0.15 11.8 6.9 1.5 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 YqhG PF11079.3 gi|119720264|ref|YP_920759.1| - 0.87 8.3 5.6 1.3 7.8 3.9 1.2 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function MAP7 PF05672.6 gi|119720264|ref|YP_920759.1| - 1.8 7.8 13.0 3.3 7.0 9.0 1.4 1 0 0 1 1 1 0 MAP7 (E-MAP-115) family DUF1273 PF06908.6 gi|119720264|ref|YP_920759.1| - 3.5 7.2 9.1 0.2 11.3 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1273) FadA PF09403.5 gi|119720264|ref|YP_920759.1| - 5.1 7.1 11.8 2.8 7.9 6.5 1.7 1 1 1 2 2 2 0 Adhesion protein FadA DUF2276 PF10040.4 gi|119720265|ref|YP_920760.1| - 3.8e-22 78.7 0.1 5.4e-22 78.2 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Cas_Cas6 PF01881.11 gi|119720265|ref|YP_920760.1| - 0.054 13.7 0.0 0.081 13.1 0.0 1.2 1 0 0 1 1 1 0 CRISPR associated protein Cas6 RAMPs PF03787.10 gi|119720267|ref|YP_920762.1| - 0.019 14.7 0.2 0.039 13.7 0.1 1.7 1 1 0 1 1 1 0 RAMP superfamily RAMPs PF03787.10 gi|119720269|ref|YP_920764.1| - 1.6e-06 28.1 0.3 9.3e-06 25.6 0.2 2.1 1 1 0 1 1 1 1 RAMP superfamily HTH_27 PF13463.1 gi|119720269|ref|YP_920764.1| - 0.075 13.3 0.0 0.24 11.7 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain FliX PF10768.4 gi|119720270|ref|YP_920765.1| - 0.0083 16.3 0.7 0.062 13.5 0.0 2.3 2 1 0 3 3 3 1 Class II flagellar assembly regulator AAA_21 PF13304.1 gi|119720271|ref|YP_920766.1| - 0.0019 18.2 0.0 0.0023 17.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|119720271|ref|YP_920766.1| - 0.057 12.4 0.0 0.077 12.0 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Lysine_decarbox PF03641.9 gi|119720274|ref|YP_920769.1| - 0.0013 18.5 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|119720274|ref|YP_920769.1| - 0.08 12.8 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase PaREP1 PF05942.6 gi|119720275|ref|YP_920770.1| - 8.1e-34 115.9 3.3 8.1e-34 115.9 2.3 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|119720275|ref|YP_920770.1| - 0.0044 16.6 0.1 0.01 15.5 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF357) DUF1045 PF06299.7 gi|119720275|ref|YP_920770.1| - 0.046 13.4 0.5 10 5.7 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1045) DUF4398 PF14346.1 gi|119720275|ref|YP_920770.1| - 0.36 10.9 3.3 0.21 11.6 0.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Fer4_8 PF13183.1 gi|119720276|ref|YP_920771.1| - 3.7e-05 23.6 6.0 0.00016 21.6 4.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119720276|ref|YP_920771.1| - 0.00056 20.2 7.1 0.0012 19.1 3.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119720276|ref|YP_920771.1| - 0.00096 19.4 6.7 0.0033 17.7 4.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119720276|ref|YP_920771.1| - 0.0017 18.1 11.6 0.062 13.2 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119720276|ref|YP_920771.1| - 0.0038 17.4 3.4 0.79 10.0 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119720276|ref|YP_920771.1| - 0.019 14.7 13.5 0.12 12.1 1.5 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119720276|ref|YP_920771.1| - 0.25 11.2 8.6 0.48 10.3 4.8 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|119720277|ref|YP_920772.1| - 1.2e-42 145.9 0.3 2e-42 145.2 0.2 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|119720277|ref|YP_920772.1| - 2.6e-37 127.4 0.1 4.5e-37 126.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FGGY_C PF02782.11 gi|119720278|ref|YP_920773.1| - 1.4e-28 99.9 0.0 3.2e-28 98.7 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.16 gi|119720278|ref|YP_920773.1| - 3.4e-23 82.2 0.0 4.9e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain UB2H PF14814.1 gi|119720278|ref|YP_920773.1| - 0.072 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain NAD_binding_8 PF13450.1 gi|119720279|ref|YP_920774.1| - 1.5e-06 28.0 1.7 1.2e-05 25.2 0.2 3.1 3 2 1 4 4 4 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|119720279|ref|YP_920774.1| - 2.9e-05 24.2 0.0 0.01 15.9 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|119720279|ref|YP_920774.1| - 0.03 14.1 0.7 17 5.1 0.1 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|119720279|ref|YP_920774.1| - 0.037 14.4 0.6 1 9.8 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|119720279|ref|YP_920774.1| - 0.087 12.6 0.0 0.38 10.6 0.0 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|119720279|ref|YP_920774.1| - 0.55 9.0 4.7 1.7 7.4 0.0 2.7 2 1 0 2 2 2 0 FAD dependent oxidoreductase DAO PF01266.19 gi|119720280|ref|YP_920775.1| - 2.1e-55 188.0 0.4 3.8e-54 183.9 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|119720280|ref|YP_920775.1| - 1.5e-07 31.3 0.0 3.4e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer2_BFD PF04324.10 gi|119720280|ref|YP_920775.1| - 1.8e-06 27.9 6.9 3.1e-06 27.1 4.8 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_3 PF13738.1 gi|119720280|ref|YP_920775.1| - 8.1e-06 26.0 0.0 0.026 14.6 0.0 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|119720280|ref|YP_920775.1| - 9.7e-06 25.5 0.0 0.00024 21.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|119720280|ref|YP_920775.1| - 1.5e-05 24.2 0.1 3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|119720280|ref|YP_920775.1| - 2.8e-05 23.3 0.2 0.00017 20.7 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|119720280|ref|YP_920775.1| - 3.5e-05 24.1 0.2 0.0044 17.3 0.0 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|119720280|ref|YP_920775.1| - 3.9e-05 22.3 0.0 0.0004 18.9 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|119720280|ref|YP_920775.1| - 6.3e-05 22.0 0.0 0.00026 20.0 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|119720280|ref|YP_920775.1| - 0.00015 20.5 0.5 0.006 15.2 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|119720280|ref|YP_920775.1| - 0.00026 19.9 0.1 0.00051 19.0 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|119720280|ref|YP_920775.1| - 0.0038 17.0 0.1 0.047 13.4 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|119720280|ref|YP_920775.1| - 0.0062 15.9 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|119720280|ref|YP_920775.1| - 0.057 12.8 0.2 0.16 11.3 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA FAD_oxidored PF12831.2 gi|119720280|ref|YP_920775.1| - 0.067 12.2 0.2 0.15 11.0 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase GDI PF00996.13 gi|119720280|ref|YP_920775.1| - 0.089 11.0 0.0 0.12 10.7 0.0 1.1 1 0 0 1 1 1 0 GDP dissociation inhibitor TrkA_N PF02254.13 gi|119720280|ref|YP_920775.1| - 0.14 12.1 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain MoCF_biosynth PF00994.19 gi|119720281|ref|YP_920776.1| - 1.7e-39 134.4 0.0 2.4e-39 134.0 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain zf-ribbon_3 PF13248.1 gi|119720282|ref|YP_920777.1| - 0.00017 20.6 3.3 0.00039 19.5 2.3 1.6 1 1 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|119720282|ref|YP_920777.1| - 0.0015 18.1 0.1 0.0027 17.3 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|119720282|ref|YP_920777.1| - 0.0016 18.2 0.8 0.0029 17.3 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|119720282|ref|YP_920777.1| - 0.0029 17.1 2.2 0.064 12.8 0.0 2.4 1 1 1 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|119720282|ref|YP_920777.1| - 0.0035 16.9 2.5 0.07 12.8 0.0 2.4 1 1 1 2 2 2 1 zinc-ribbon domain Peptidase_A22B PF04258.8 gi|119720282|ref|YP_920777.1| - 0.0045 16.4 0.9 0.0065 15.9 0.6 1.2 1 0 0 1 1 1 1 Signal peptide peptidase zf-NADH-PPase PF09297.6 gi|119720282|ref|YP_920777.1| - 0.0082 15.6 2.0 0.017 14.6 1.4 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|119720282|ref|YP_920777.1| - 0.015 14.7 3.6 0.096 12.2 2.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF4131 PF13567.1 gi|119720282|ref|YP_920777.1| - 0.067 12.5 0.2 0.12 11.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Nop10p PF04135.7 gi|119720282|ref|YP_920777.1| - 0.15 11.7 0.2 0.52 10.0 0.0 1.9 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family DNA_ligase_ZBD PF03119.11 gi|119720282|ref|YP_920777.1| - 0.2 11.4 1.9 0.4 10.4 1.0 1.8 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|119720282|ref|YP_920777.1| - 0.26 11.0 2.3 2.8 7.7 1.7 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|119720282|ref|YP_920777.1| - 0.26 10.6 1.6 0.52 9.6 1.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Rad50_zn_hook PF04423.9 gi|119720282|ref|YP_920777.1| - 0.35 10.3 2.9 0.62 9.5 0.2 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif Lar_restr_allev PF14354.1 gi|119720282|ref|YP_920777.1| - 0.4 11.0 2.4 1.8 8.9 1.7 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF1469 PF07332.6 gi|119720282|ref|YP_920777.1| - 0.48 10.1 5.4 1 9.1 3.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) ABC_membrane PF00664.18 gi|119720282|ref|YP_920777.1| - 1.1 8.6 5.2 1.5 8.1 3.6 1.1 1 0 0 1 1 1 0 ABC transporter transmembrane region DUF843 PF05814.6 gi|119720282|ref|YP_920777.1| - 1.5 8.6 6.4 2.9 7.7 4.4 1.5 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF843) Tic20 PF09685.5 gi|119720282|ref|YP_920777.1| - 2.2 8.2 8.7 4.8 7.2 6.0 1.5 1 0 0 1 1 1 0 Tic20-like protein PIN PF01850.16 gi|119720283|ref|YP_920778.1| - 1.4e-05 25.4 0.7 1.9e-05 24.9 0.5 1.2 1 0 0 1 1 1 1 PIN domain Baculo_LEF-10 PF07206.6 gi|119720283|ref|YP_920778.1| - 0.055 13.1 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Baculovirus late expression factor 10 (LEF-10) Mut7-C PF01927.11 gi|119720283|ref|YP_920778.1| - 0.14 12.1 0.1 0.25 11.3 0.1 1.5 1 1 0 1 1 1 0 Mut7-C RNAse domain LEM PF03020.10 gi|119720284|ref|YP_920779.1| - 0.0013 18.1 0.1 0.0039 16.6 0.0 1.9 2 1 0 2 2 2 1 LEM domain GntR PF00392.16 gi|119720284|ref|YP_920779.1| - 0.0035 16.7 0.5 0.018 14.4 0.1 2.1 1 1 1 2 2 2 2 Bacterial regulatory proteins, gntR family DUF3368 PF11848.3 gi|119720284|ref|YP_920779.1| - 0.059 12.9 1.0 0.7 9.4 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) Pribosyltran PF00156.22 gi|119720285|ref|YP_920780.1| - 0.0073 16.0 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Glyco_trans_4_2 PF13477.1 gi|119720285|ref|YP_920780.1| - 0.076 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Arch_ATPase PF01637.13 gi|119720286|ref|YP_920781.1| - 5.5e-53 180.0 0.0 7.4e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|119720286|ref|YP_920781.1| - 3.7e-07 30.3 0.2 7.4e-06 26.0 0.2 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|119720286|ref|YP_920781.1| - 3.2e-05 24.1 0.0 5.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|119720286|ref|YP_920781.1| - 0.00023 21.2 0.0 0.00056 20.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|119720286|ref|YP_920781.1| - 0.00051 19.7 0.1 0.0015 18.2 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|119720286|ref|YP_920781.1| - 0.00074 18.4 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_14 PF13173.1 gi|119720286|ref|YP_920781.1| - 0.0008 19.3 0.0 0.0023 17.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|119720286|ref|YP_920781.1| - 0.002 17.7 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.1 gi|119720286|ref|YP_920781.1| - 0.003 17.1 0.1 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|119720286|ref|YP_920781.1| - 0.014 15.3 0.0 0.034 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|119720286|ref|YP_920781.1| - 0.015 15.0 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.12 gi|119720286|ref|YP_920781.1| - 0.046 13.2 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|119720286|ref|YP_920781.1| - 0.057 12.9 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|119720286|ref|YP_920781.1| - 0.057 13.1 0.0 0.17 11.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain RNA_helicase PF00910.17 gi|119720286|ref|YP_920781.1| - 0.059 13.5 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|119720286|ref|YP_920781.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DAP3 PF10236.4 gi|119720286|ref|YP_920781.1| - 0.083 11.8 0.0 0.16 10.9 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 KAP_NTPase PF07693.9 gi|119720286|ref|YP_920781.1| - 0.1 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|119720286|ref|YP_920781.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_10 PF12846.2 gi|119720286|ref|YP_920781.1| - 0.14 11.5 0.0 0.69 9.3 0.0 2.2 1 1 0 1 1 1 0 AAA-like domain Bac_DnaA PF00308.13 gi|119720286|ref|YP_920781.1| - 0.15 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein Adeno_IVa2 PF02456.10 gi|119720286|ref|YP_920781.1| - 0.15 10.6 0.0 0.33 9.5 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein Spermine_synth PF01564.12 gi|119720287|ref|YP_920782.1| - 1.7e-65 220.4 0.0 2.1e-65 220.0 0.0 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|119720287|ref|YP_920782.1| - 6.3e-12 45.5 0.0 1.1e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|119720287|ref|YP_920782.1| - 3.8e-07 30.4 0.0 7.5e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119720287|ref|YP_920782.1| - 1.5e-06 27.8 0.0 2.3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119720287|ref|YP_920782.1| - 3.4e-06 27.4 0.0 6.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119720287|ref|YP_920782.1| - 1.2e-05 25.7 0.0 2.8e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|119720287|ref|YP_920782.1| - 2.5e-05 24.0 0.0 9.2e-05 22.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119720287|ref|YP_920782.1| - 0.0016 18.7 0.0 0.003 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|119720287|ref|YP_920782.1| - 0.0086 15.0 0.0 0.016 14.1 0.0 1.4 2 0 0 2 2 2 1 PRMT5 arginine-N-methyltransferase Methyltransf_24 PF13578.1 gi|119720287|ref|YP_920782.1| - 0.016 16.0 0.0 0.046 14.5 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|119720287|ref|YP_920782.1| - 0.055 12.6 0.2 0.083 12.0 0.1 1.2 1 0 0 1 1 1 0 O-methyltransferase DUF43 PF01861.11 gi|119720287|ref|YP_920782.1| - 0.064 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 RrnaAD PF00398.15 gi|119720287|ref|YP_920782.1| - 0.067 12.2 0.0 0.091 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Arr-ms PF12120.3 gi|119720287|ref|YP_920782.1| - 0.067 13.1 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Rifampin ADP-ribosyl transferase Methyltransf_30 PF05430.6 gi|119720287|ref|YP_920782.1| - 0.092 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|119720287|ref|YP_920782.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain IncA PF04156.9 gi|119720288|ref|YP_920783.1| - 1.8e-06 27.7 0.0 2e-06 27.5 0.0 1.0 1 0 0 1 1 1 1 IncA protein PgaD PF13994.1 gi|119720288|ref|YP_920783.1| - 0.00058 19.3 0.1 0.00058 19.3 0.1 1.4 2 0 0 2 2 2 1 PgaD-like protein DUF4131 PF13567.1 gi|119720288|ref|YP_920783.1| - 0.00092 18.6 0.1 0.00096 18.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) BatA PF07584.6 gi|119720288|ref|YP_920783.1| - 0.028 14.5 1.9 0.042 14.0 1.3 1.4 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal PspB PF06667.7 gi|119720288|ref|YP_920783.1| - 0.031 14.2 0.4 0.041 13.8 0.3 1.1 1 0 0 1 1 1 0 Phage shock protein B DUF3328 PF11807.3 gi|119720288|ref|YP_920783.1| - 0.047 13.3 0.0 0.052 13.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) Afaf PF15339.1 gi|119720288|ref|YP_920783.1| - 0.062 12.9 0.1 0.075 12.6 0.1 1.1 1 0 0 1 1 1 0 Acrosome formation-associated factor BatD PF13584.1 gi|119720288|ref|YP_920783.1| - 0.09 11.3 0.1 0.099 11.2 0.1 1.0 1 0 0 1 1 1 0 Oxygen tolerance DUF4140 PF13600.1 gi|119720288|ref|YP_920783.1| - 0.15 12.5 1.9 0.18 12.2 1.3 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF4445 PF14574.1 gi|119720289|ref|YP_920784.1| - 9.4e-139 462.1 0.0 1.1e-138 461.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer2 PF00111.22 gi|119720289|ref|YP_920784.1| - 9.9e-11 41.2 0.1 1.9e-10 40.3 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain TOBE PF03459.12 gi|119720289|ref|YP_920784.1| - 0.03 14.4 4.6 0.26 11.3 0.1 3.9 3 0 0 3 3 3 0 TOBE domain Fer2_4 PF13510.1 gi|119720289|ref|YP_920784.1| - 0.034 13.9 0.1 0.11 12.3 0.1 1.8 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain MFS_1 PF07690.11 gi|119720290|ref|YP_920785.1| - 2.1e-24 85.9 61.8 2.5e-15 56.0 19.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|119720290|ref|YP_920785.1| - 0.0011 17.5 21.4 0.044 12.3 6.0 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter Methyltransf_25 PF13649.1 gi|119720291|ref|YP_920786.1| - 6.7e-14 52.0 0.0 9.5e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|119720291|ref|YP_920786.1| - 6.2e-09 36.4 0.1 1e-08 35.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|119720291|ref|YP_920786.1| - 6.8e-08 32.2 0.0 9.3e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|119720291|ref|YP_920786.1| - 2.3e-05 24.3 0.7 3.7e-05 23.7 0.5 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|119720291|ref|YP_920786.1| - 0.0018 18.0 0.0 0.0022 17.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|119720291|ref|YP_920786.1| - 0.0035 16.7 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|119720291|ref|YP_920786.1| - 0.019 14.0 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family 3HCDH_N PF02737.13 gi|119720291|ref|YP_920786.1| - 0.021 14.5 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_12 PF08242.7 gi|119720291|ref|YP_920786.1| - 0.027 14.9 0.0 0.04 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|119720291|ref|YP_920786.1| - 0.04 13.6 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.10 gi|119720291|ref|YP_920786.1| - 0.042 13.0 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G DAO PF01266.19 gi|119720291|ref|YP_920786.1| - 0.05 12.4 1.9 0.13 11.1 0.1 1.9 1 1 1 2 2 2 0 FAD dependent oxidoreductase BPL_C PF02237.12 gi|119720291|ref|YP_920786.1| - 0.13 11.9 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain Abhydrolase_6 PF12697.2 gi|119720292|ref|YP_920787.1| - 3.7e-31 108.7 0.4 4.5e-31 108.4 0.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|119720292|ref|YP_920787.1| - 6.6e-27 93.1 0.5 1.2e-26 92.3 0.3 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_5 PF12695.2 gi|119720292|ref|YP_920787.1| - 3.4e-23 82.0 1.7 1.2e-22 80.2 1.2 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|119720292|ref|YP_920787.1| - 2.9e-13 49.9 0.3 5.1e-11 42.5 0.2 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|119720292|ref|YP_920787.1| - 7.9e-11 41.5 1.3 1.7e-07 30.7 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.11 gi|119720292|ref|YP_920787.1| - 1.1e-06 28.2 0.6 7.4e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase AXE1 PF05448.7 gi|119720292|ref|YP_920787.1| - 3.6e-05 22.4 0.6 0.0073 14.8 0.0 2.5 2 1 1 3 3 3 2 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|119720292|ref|YP_920787.1| - 0.0018 17.5 0.0 0.04 13.2 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family Lipase_3 PF01764.20 gi|119720292|ref|YP_920787.1| - 0.0036 16.9 0.2 0.007 15.9 0.1 1.5 1 0 0 1 1 1 1 Lipase (class 3) PGAP1 PF07819.8 gi|119720292|ref|YP_920787.1| - 0.006 16.1 0.1 0.0082 15.7 0.0 1.4 1 0 0 1 1 1 1 PGAP1-like protein FSH1 PF03959.8 gi|119720292|ref|YP_920787.1| - 0.0068 15.8 0.0 0.023 14.1 0.0 1.9 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.8 gi|119720292|ref|YP_920787.1| - 0.013 15.1 0.1 0.028 13.9 0.0 1.6 1 1 0 1 1 1 0 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|119720292|ref|YP_920787.1| - 0.099 12.0 0.0 10 5.4 0.0 2.1 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Tannase PF07519.6 gi|119720292|ref|YP_920787.1| - 0.13 10.9 0.0 3.4 6.2 0.0 2.1 2 0 0 2 2 2 0 Tannase and feruloyl esterase Peptidase_S8 PF00082.17 gi|119720293|ref|YP_920788.1| - 1.3e-59 201.6 13.8 1.7e-59 201.2 9.6 1.1 1 0 0 1 1 1 1 Subtilase family Ribosomal_L37 PF08561.5 gi|119720293|ref|YP_920788.1| - 0.047 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L37 PIN PF01850.16 gi|119720295|ref|YP_920790.1| - 7.5e-13 48.8 0.3 8.7e-13 48.6 0.2 1.0 1 0 0 1 1 1 1 PIN domain Lactamase_B PF00753.22 gi|119720296|ref|YP_920791.1| - 1.3e-14 54.2 0.2 3.3e-14 52.9 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|119720296|ref|YP_920791.1| - 8.5e-07 28.7 0.0 9.5e-07 28.5 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|119720296|ref|YP_920791.1| - 0.02 14.6 0.0 0.044 13.4 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain DUF1945 PF09178.5 gi|119720296|ref|YP_920791.1| - 0.021 14.7 0.1 0.14 12.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) ETF PF01012.16 gi|119720296|ref|YP_920791.1| - 0.14 11.9 1.1 0.19 11.4 0.2 1.6 2 0 0 2 2 2 0 Electron transfer flavoprotein domain CitMHS PF03600.11 gi|119720297|ref|YP_920792.1| - 0.17 10.4 7.6 0.21 10.1 5.3 1.1 1 0 0 1 1 1 0 Citrate transporter DUF754 PF05449.6 gi|119720297|ref|YP_920792.1| - 2.5 8.1 9.1 0.66 10.0 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF754) DUF202 PF02656.10 gi|119720297|ref|YP_920792.1| - 2.6 8.3 10.8 34 4.7 6.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF202) DUF1625 PF07787.7 gi|119720297|ref|YP_920792.1| - 3.1 6.9 5.6 4.1 6.5 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) UPF0139 PF03669.8 gi|119720297|ref|YP_920792.1| - 7.6 6.1 6.3 2.1 7.8 2.4 1.7 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0139) NurA PF09376.5 gi|119720298|ref|YP_920793.1| - 1.4e-17 64.0 0.0 2e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.12 gi|119720299|ref|YP_920794.1| - 3.2e-33 115.4 0.0 5.5e-33 114.6 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|119720299|ref|YP_920794.1| - 2.3e-21 76.5 0.0 9.5e-21 74.5 0.0 1.9 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|119720299|ref|YP_920794.1| - 0.00037 18.9 0.0 0.00079 17.8 0.0 1.5 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|119720299|ref|YP_920794.1| - 0.00097 17.8 0.0 0.032 12.8 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|119720299|ref|YP_920794.1| - 0.0019 17.6 0.0 0.48 9.8 0.0 3.2 2 2 0 2 2 2 1 FtsK/SpoIIIE family DEAD PF00270.24 gi|119720299|ref|YP_920794.1| - 0.18 11.2 0.0 11 5.5 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase PALP PF00291.20 gi|119720300|ref|YP_920795.1| - 4e-57 193.7 0.0 4.9e-57 193.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GHMP_kinases_C PF08544.8 gi|119720300|ref|YP_920795.1| - 0.065 13.4 0.6 0.6 10.3 0.0 2.5 3 0 0 3 3 3 0 GHMP kinases C terminal HEPN PF05168.9 gi|119720301|ref|YP_920796.1| - 2.4e-19 69.3 0.1 3e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|119720302|ref|YP_920797.1| - 2.4e-09 37.3 2.2 4.3e-09 36.5 1.5 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF3368 PF11848.3 gi|119720302|ref|YP_920797.1| - 0.03 13.8 0.0 0.095 12.2 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) DUF294 PF03445.8 gi|119720302|ref|YP_920797.1| - 0.038 13.6 0.0 0.082 12.5 0.0 1.5 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 ABC2_membrane PF01061.19 gi|119720303|ref|YP_920798.1| - 9.4e-11 41.2 16.6 1.6e-10 40.5 11.5 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|119720303|ref|YP_920798.1| - 4.8e-10 39.0 13.0 4.8e-10 39.0 9.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720303|ref|YP_920798.1| - 1.2e-05 24.5 17.9 1.7e-05 24.1 12.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|119720304|ref|YP_920799.1| - 1.1e-11 44.3 15.9 1.1e-11 44.3 11.0 1.8 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|119720304|ref|YP_920799.1| - 3.5e-11 42.6 17.2 3.5e-11 42.6 11.9 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_6 PF06182.6 gi|119720304|ref|YP_920799.1| - 3.9e-07 29.8 5.1 5.9e-07 29.2 3.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720304|ref|YP_920799.1| - 0.00054 19.1 19.2 0.00076 18.7 13.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF3529 PF12046.3 gi|119720304|ref|YP_920799.1| - 0.0092 15.0 3.0 0.017 14.1 2.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3529) DUF2254 PF10011.4 gi|119720304|ref|YP_920799.1| - 0.013 14.0 2.5 0.024 13.0 1.7 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) ABC_tran PF00005.22 gi|119720305|ref|YP_920800.1| - 3.8e-28 98.5 0.0 6.8e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720305|ref|YP_920800.1| - 6.7e-18 65.6 1.6 1.9e-15 57.6 1.1 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|119720305|ref|YP_920800.1| - 2.7e-05 23.0 0.0 3.3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|119720305|ref|YP_920800.1| - 6.9e-05 22.2 0.0 0.00016 21.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|119720305|ref|YP_920800.1| - 0.0016 18.9 0.0 0.0035 17.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|119720305|ref|YP_920800.1| - 0.0021 17.1 0.0 0.24 10.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|119720305|ref|YP_920800.1| - 0.0039 17.5 2.9 0.0096 16.2 0.4 2.0 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|119720305|ref|YP_920800.1| - 0.037 14.0 0.1 0.099 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|119720305|ref|YP_920800.1| - 0.044 13.9 0.3 0.34 11.0 0.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|119720305|ref|YP_920800.1| - 0.06 14.1 1.1 0.12 13.1 0.7 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|119720305|ref|YP_920800.1| - 0.088 12.5 0.0 0.31 10.8 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain SMC_N PF02463.14 gi|119720305|ref|YP_920800.1| - 0.13 11.5 0.0 15 4.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PadR PF03551.9 gi|119720306|ref|YP_920801.1| - 1.5e-19 69.5 0.1 2.1e-19 69.0 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|119720306|ref|YP_920801.1| - 1.6e-06 27.7 0.0 4e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|119720306|ref|YP_920801.1| - 0.00092 18.8 0.0 1.5 8.5 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|119720306|ref|YP_920801.1| - 0.00095 18.8 0.6 0.0067 16.1 0.1 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|119720306|ref|YP_920801.1| - 0.001 18.7 2.9 0.0016 18.1 0.7 2.2 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain AphA_like PF14557.1 gi|119720306|ref|YP_920801.1| - 0.001 18.6 0.1 0.0027 17.2 0.0 1.5 1 1 0 1 1 1 1 Putative AphA-like transcriptional regulator DUF3116 PF11313.3 gi|119720306|ref|YP_920801.1| - 0.0026 17.3 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) HTH_27 PF13463.1 gi|119720306|ref|YP_920801.1| - 0.019 15.2 0.2 0.046 14.0 0.0 1.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|119720306|ref|YP_920801.1| - 0.021 14.6 0.3 0.054 13.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DUF505 PF04458.7 gi|119720306|ref|YP_920801.1| - 0.023 12.8 0.0 0.028 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HxlR PF01638.12 gi|119720306|ref|YP_920801.1| - 0.027 14.1 0.3 0.055 13.1 0.2 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix MarR PF01047.17 gi|119720306|ref|YP_920801.1| - 0.075 12.7 0.0 0.27 10.9 0.0 1.9 1 0 0 1 1 1 0 MarR family HemN_C PF06969.11 gi|119720306|ref|YP_920801.1| - 0.11 12.5 0.5 0.3 11.1 0.1 2.1 2 1 0 2 2 2 0 HemN C-terminal domain DUF1495 PF07381.6 gi|119720306|ref|YP_920801.1| - 0.12 12.0 0.1 0.68 9.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) CARDB PF07705.6 gi|119720307|ref|YP_920802.1| - 1.2e-10 41.3 0.2 0.077 13.0 0.0 4.4 4 0 0 4 4 4 4 CARDB NPCBM_assoc PF10633.4 gi|119720307|ref|YP_920802.1| - 0.0099 15.9 10.3 0.05 13.6 0.6 4.4 4 1 0 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase MacB_PCD PF12704.2 gi|119720308|ref|YP_920803.1| - 1.3e-22 80.5 1.3 1.3e-22 80.5 0.9 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|119720308|ref|YP_920803.1| - 1.3e-16 60.4 10.7 1.3e-16 60.4 7.4 2.6 2 1 0 2 2 2 1 FtsX-like permease family Formyl_trans_N PF00551.14 gi|119720308|ref|YP_920803.1| - 0.012 15.2 0.0 0.081 12.4 0.0 2.0 2 0 0 2 2 2 0 Formyl transferase ABC_tran PF00005.22 gi|119720309|ref|YP_920804.1| - 5.4e-30 104.4 0.0 6.9e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720309|ref|YP_920804.1| - 2.1e-11 44.3 0.0 3.5e-06 27.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|119720309|ref|YP_920804.1| - 7.3e-06 25.6 0.3 0.0088 15.5 0.1 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|119720309|ref|YP_920804.1| - 3.7e-05 23.8 0.2 0.00074 19.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|119720309|ref|YP_920804.1| - 0.00012 21.6 0.1 0.059 12.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119720309|ref|YP_920804.1| - 0.00018 21.5 1.3 0.00054 19.9 0.9 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|119720309|ref|YP_920804.1| - 0.0016 17.8 0.1 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119720309|ref|YP_920804.1| - 0.0047 16.1 0.0 1.5 8.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|119720309|ref|YP_920804.1| - 0.0084 16.0 0.1 0.07 13.0 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|119720309|ref|YP_920804.1| - 0.013 15.4 0.8 0.036 13.9 0.6 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|119720309|ref|YP_920804.1| - 0.015 16.0 1.7 0.05 14.4 1.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|119720309|ref|YP_920804.1| - 0.021 15.1 0.0 0.031 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|119720309|ref|YP_920804.1| - 0.022 14.4 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|119720309|ref|YP_920804.1| - 0.026 14.2 1.8 0.038 13.7 0.4 2.0 2 0 0 2 2 2 0 Part of AAA domain cobW PF02492.14 gi|119720309|ref|YP_920804.1| - 0.062 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|119720309|ref|YP_920804.1| - 0.062 13.0 0.1 0.22 11.2 0.0 1.9 2 1 0 2 2 2 0 NTPase DUF2791 PF10923.3 gi|119720309|ref|YP_920804.1| - 0.068 11.7 0.1 0.098 11.2 0.1 1.1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_30 PF13604.1 gi|119720309|ref|YP_920804.1| - 0.078 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|119720309|ref|YP_920804.1| - 0.081 12.5 0.1 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|119720309|ref|YP_920804.1| - 0.15 11.2 0.1 0.23 10.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 EcsB PF05975.7 gi|119720311|ref|YP_920806.1| - 0.013 14.0 5.5 0.016 13.7 3.8 1.1 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF2127 PF09900.4 gi|119720311|ref|YP_920806.1| - 0.016 15.2 7.2 0.016 15.2 5.0 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2127) DUF308 PF03729.8 gi|119720311|ref|YP_920806.1| - 0.94 9.5 23.2 0.56 10.2 9.3 2.9 3 0 0 3 3 3 0 Short repeat of unknown function (DUF308) Molybdopterin PF00384.17 gi|119720313|ref|YP_920808.1| - 2.8e-42 144.9 0.0 3e-41 141.5 0.0 2.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|119720313|ref|YP_920808.1| - 7.5e-14 51.2 0.0 1.4e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.16 gi|119720313|ref|YP_920808.1| - 2.1e-13 50.0 0.0 4.9e-13 48.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Antitoxin-MazE PF04014.13 gi|119720313|ref|YP_920808.1| - 0.0041 16.8 0.2 0.034 13.8 0.0 2.6 3 0 0 3 3 3 1 Antidote-toxin recognition MazE AAA-ATPase_like PF09820.4 gi|119720313|ref|YP_920808.1| - 0.023 13.8 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Predicted AAA-ATPase Fer4_11 PF13247.1 gi|119720314|ref|YP_920809.1| - 2.3e-26 91.5 15.1 7.5e-25 86.7 7.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119720314|ref|YP_920809.1| - 4.1e-13 49.4 30.5 7.2e-07 29.4 9.3 3.6 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119720314|ref|YP_920809.1| - 5.1e-13 49.0 24.8 5.1e-07 29.8 7.4 3.1 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119720314|ref|YP_920809.1| - 6e-13 48.3 25.2 6.8e-07 28.9 6.7 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119720314|ref|YP_920809.1| - 3e-12 45.6 40.7 7e-07 28.5 2.2 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|119720314|ref|YP_920809.1| - 2.3e-11 42.8 37.3 1.6e-06 27.6 0.8 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|119720314|ref|YP_920809.1| - 2.6e-09 36.5 40.0 0.00015 21.4 2.0 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|119720314|ref|YP_920809.1| - 6.4e-09 35.7 22.5 1.5e-06 28.1 2.1 3.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119720314|ref|YP_920809.1| - 1.3e-08 34.5 22.7 6.1e-05 22.7 6.9 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|119720314|ref|YP_920809.1| - 1.6e-07 31.3 42.5 0.0026 18.1 2.4 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|119720314|ref|YP_920809.1| - 4.1e-06 27.4 21.0 0.93 10.2 2.1 4.9 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|119720314|ref|YP_920809.1| - 7.3e-06 26.4 22.2 0.0044 17.5 0.4 4.5 3 2 1 4 4 4 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|119720314|ref|YP_920809.1| - 3.2e-05 24.1 22.1 0.041 14.2 1.1 4.4 2 1 3 5 5 5 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119720314|ref|YP_920809.1| - 0.00027 21.0 37.6 0.0059 16.8 2.1 4.5 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|119720314|ref|YP_920809.1| - 0.00036 20.8 22.2 0.031 14.7 1.3 4.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|119720314|ref|YP_920809.1| - 0.0015 18.9 25.7 0.0053 17.1 0.4 3.9 3 2 0 3 3 3 2 4Fe-4S single cluster domain Cytochrom_B_N PF00033.14 gi|119720315|ref|YP_920810.1| - 3.3e-15 55.9 11.0 3.9e-15 55.6 7.6 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|119720315|ref|YP_920810.1| - 4.6e-13 48.9 9.6 5.4e-13 48.7 6.7 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DsbD PF02683.10 gi|119720315|ref|YP_920810.1| - 0.058 12.9 11.9 0.54 9.8 8.2 2.0 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region PepSY_TM PF03929.11 gi|119720315|ref|YP_920810.1| - 0.23 11.8 0.2 0.23 11.8 0.1 4.7 5 0 0 5 5 5 0 PepSY-associated TM helix DUF3817 PF12823.2 gi|119720315|ref|YP_920810.1| - 2 8.9 10.0 2.2 8.7 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3817) FdhE PF04216.7 gi|119720316|ref|YP_920811.1| - 6e-12 45.8 1.0 7.3e-12 45.6 0.7 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Elf1 PF05129.8 gi|119720316|ref|YP_920811.1| - 0.00017 21.2 2.1 0.02 14.5 0.2 2.4 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like zf-H2C2_2 PF13465.1 gi|119720316|ref|YP_920811.1| - 0.0011 19.1 5.2 3 8.2 0.1 3.4 3 0 0 3 3 3 1 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|119720316|ref|YP_920811.1| - 0.011 14.8 9.2 2.4 7.5 0.5 3.5 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|119720316|ref|YP_920811.1| - 0.018 14.6 0.9 0.018 14.6 0.7 2.7 1 1 2 3 3 3 0 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|119720316|ref|YP_920811.1| - 0.022 14.6 0.5 8.9 6.3 0.2 2.5 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-RING_3 PF14369.1 gi|119720316|ref|YP_920811.1| - 0.031 14.2 2.5 8.9 6.4 0.0 3.2 3 0 0 3 3 3 0 zinc-finger Ogr_Delta PF04606.7 gi|119720316|ref|YP_920811.1| - 0.041 13.5 1.5 0.041 13.5 1.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.2 gi|119720316|ref|YP_920811.1| - 0.054 13.2 12.3 0.076 12.8 2.5 3.2 2 1 0 3 3 3 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|119720316|ref|YP_920811.1| - 0.073 12.7 5.9 3.3 7.4 0.1 3.7 3 0 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|119720316|ref|YP_920811.1| - 0.11 12.4 8.2 2.1 8.3 1.9 3.6 2 1 1 3 3 3 0 Zinc ribbon domain DUF1610 PF07754.6 gi|119720316|ref|YP_920811.1| - 0.13 12.4 11.6 1.7 8.8 0.1 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) DZR PF12773.2 gi|119720316|ref|YP_920811.1| - 0.16 11.7 8.8 2.9 7.7 4.9 2.6 2 1 1 3 3 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|119720316|ref|YP_920811.1| - 0.2 11.0 9.3 8.3 5.8 0.0 3.3 2 1 1 3 3 3 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|119720316|ref|YP_920811.1| - 0.21 11.9 7.1 7.1 7.0 4.9 2.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Trm112p PF03966.11 gi|119720316|ref|YP_920811.1| - 0.29 11.5 4.3 1.6 9.1 0.4 2.7 3 0 0 3 3 3 0 Trm112p-like protein zf-C2H2_4 PF13894.1 gi|119720316|ref|YP_920811.1| - 0.38 11.2 3.1 17 6.0 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger DUF2225 PF09986.4 gi|119720316|ref|YP_920811.1| - 0.44 9.9 2.5 1.1 8.6 0.0 2.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) CpXC PF14353.1 gi|119720316|ref|YP_920811.1| - 0.49 10.3 6.2 0.91 9.4 2.8 2.2 1 1 1 2 2 2 0 CpXC protein zf-ISL3 PF14690.1 gi|119720316|ref|YP_920811.1| - 0.49 10.4 7.5 4.5 7.3 0.1 3.4 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.7 gi|119720316|ref|YP_920811.1| - 0.53 9.7 7.9 0.33 10.4 0.2 3.2 3 0 0 3 3 3 0 HypF finger HypA PF01155.14 gi|119720316|ref|YP_920811.1| - 0.58 9.8 6.9 5 6.8 2.3 3.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C2H2 PF00096.21 gi|119720316|ref|YP_920811.1| - 0.92 9.9 6.9 34 5.0 0.2 3.6 3 0 0 3 3 3 0 Zinc finger, C2H2 type zinc_ribbon_4 PF13717.1 gi|119720316|ref|YP_920811.1| - 0.93 9.2 7.6 21 4.9 0.1 3.7 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|119720316|ref|YP_920811.1| - 1.2 8.8 7.9 18 5.0 0.1 3.7 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|119720316|ref|YP_920811.1| - 1.6 8.3 11.3 22 4.6 0.0 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Sgf11 PF08209.6 gi|119720316|ref|YP_920811.1| - 1.8 7.9 6.6 12 5.2 0.1 3.2 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-TFIIB PF13453.1 gi|119720316|ref|YP_920811.1| - 2.2 7.5 9.0 4 6.6 0.6 3.0 2 1 1 3 3 3 0 Transcription factor zinc-finger TFIIS_C PF01096.13 gi|119720316|ref|YP_920811.1| - 2.8 7.6 7.6 32 4.2 0.1 3.5 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.7 gi|119720316|ref|YP_920811.1| - 3.6 7.4 5.8 38 4.1 0.0 3.3 2 1 0 2 2 2 0 PhnA Zinc-Ribbon ADK_lid PF05191.9 gi|119720316|ref|YP_920811.1| - 4.2 7.1 7.2 6.9 6.4 0.4 3.4 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf-Mss51 PF13824.1 gi|119720316|ref|YP_920811.1| - 5.6 6.8 6.1 5.4 6.9 1.2 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin PF00301.15 gi|119720316|ref|YP_920811.1| - 7.8 6.4 12.2 13 5.7 0.2 3.8 3 1 1 4 4 4 0 Rubredoxin Fer4_11 PF13247.1 gi|119720317|ref|YP_920812.1| - 8.1e-15 54.5 14.3 2.6e-14 52.8 8.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119720317|ref|YP_920812.1| - 5.9e-11 41.7 28.6 7.8e-07 28.6 1.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119720317|ref|YP_920812.1| - 8.3e-11 41.9 49.2 1.1e-05 25.5 8.9 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119720317|ref|YP_920812.1| - 8.4e-11 41.1 26.3 5.5e-06 25.9 2.5 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|119720317|ref|YP_920812.1| - 9.9e-10 38.6 29.9 1.4e-05 25.3 8.8 2.9 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119720317|ref|YP_920812.1| - 4.4e-08 32.8 20.4 4.7e-05 23.1 5.1 3.4 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|119720317|ref|YP_920812.1| - 5.8e-08 32.4 25.8 4.2e-06 26.4 6.8 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119720317|ref|YP_920812.1| - 1.6e-06 27.4 12.8 4.4e-06 26.0 2.5 5.0 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|119720317|ref|YP_920812.1| - 1.5e-05 24.9 33.9 0.0014 18.7 2.4 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|119720317|ref|YP_920812.1| - 0.0077 16.9 2.8 0.0077 16.9 1.9 4.1 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|119720317|ref|YP_920812.1| - 0.011 16.2 41.4 0.057 14.0 4.4 4.5 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|119720317|ref|YP_920812.1| - 0.019 15.5 9.3 0.019 15.5 6.4 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|119720317|ref|YP_920812.1| - 0.029 14.7 28.0 0.33 11.3 0.1 4.1 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119720317|ref|YP_920812.1| - 0.19 11.7 29.0 0.061 13.3 13.8 3.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF164 PF02591.10 gi|119720317|ref|YP_920812.1| - 0.98 9.3 10.0 0.24 11.2 2.1 2.7 2 1 0 2 2 2 0 Putative zinc ribbon domain AFOR_C PF01314.13 gi|119720318|ref|YP_920813.1| - 2.3e-87 293.1 0.0 2.5e-86 289.7 0.0 2.0 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|119720318|ref|YP_920813.1| - 1.6e-67 226.7 0.1 2.6e-67 226.1 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PaREP1 PF05942.6 gi|119720319|ref|YP_920814.1| - 1.6e-23 82.7 4.7 2.4e-23 82.2 3.3 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|119720319|ref|YP_920814.1| - 8.5e-05 22.4 1.1 0.00036 20.4 0.8 1.9 1 1 0 1 1 1 1 HEPN domain DUF1771 PF08590.5 gi|119720319|ref|YP_920814.1| - 1.1 9.3 5.2 6.1 6.9 1.4 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1771) NTP_transf_2 PF01909.18 gi|119720320|ref|YP_920815.1| - 5.2e-08 33.1 0.0 7.1e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|119720320|ref|YP_920815.1| - 0.00041 19.9 0.0 0.00062 19.3 0.0 1.3 1 1 0 1 1 1 1 Putative nucleotidyltransferase DUF294 Aminotran_1_2 PF00155.16 gi|119720322|ref|YP_920817.1| - 9.2e-54 182.7 0.0 1e-53 182.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CarboxypepD_reg PF13620.1 gi|119720323|ref|YP_920818.1| - 7.8e-09 35.4 7.3 6.5e-07 29.3 0.7 2.1 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|119720323|ref|YP_920818.1| - 0.0025 17.4 0.0 0.01 15.4 0.0 2.0 1 0 0 1 1 1 1 Salmonella repeat of unknown function (DUF824) ABC_tran PF00005.22 gi|119720324|ref|YP_920819.1| - 1e-24 87.3 0.0 1.4e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720324|ref|YP_920819.1| - 8.4e-14 52.2 0.0 4.2e-11 43.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119720324|ref|YP_920819.1| - 0.00078 19.4 0.0 0.0021 18.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|119720324|ref|YP_920819.1| - 0.00083 18.8 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|119720324|ref|YP_920819.1| - 0.0024 18.2 0.0 0.0037 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|119720324|ref|YP_920819.1| - 0.0033 17.1 0.1 0.0098 15.6 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|119720324|ref|YP_920819.1| - 0.015 14.9 0.1 0.033 13.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|119720324|ref|YP_920819.1| - 0.021 14.2 0.1 0.74 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|119720324|ref|YP_920819.1| - 0.024 14.7 0.0 0.11 12.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|119720324|ref|YP_920819.1| - 0.074 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|119720324|ref|YP_920819.1| - 0.091 12.9 0.0 0.3 11.2 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|119720324|ref|YP_920819.1| - 0.12 11.4 0.0 7.5 5.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|119720324|ref|YP_920819.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTP_transf_2 PF01909.18 gi|119720327|ref|YP_920822.1| - 9.4e-10 38.6 0.8 1.6e-09 37.9 0.3 1.5 1 1 1 2 2 2 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|119720327|ref|YP_920822.1| - 0.00025 20.4 0.0 0.00031 20.1 0.0 1.1 1 0 0 1 1 1 1 Predicted nucleotidyltransferase FmdE PF02663.9 gi|119720328|ref|YP_920823.1| - 1.2e-36 125.5 0.0 1.4e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|119720328|ref|YP_920823.1| - 4.4e-08 32.7 0.5 8.8e-08 31.7 0.3 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Hexapep PF00132.19 gi|119720328|ref|YP_920823.1| - 0.14 11.7 0.3 0.29 10.7 0.2 1.5 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Peripla_BP_2 PF01497.13 gi|119720329|ref|YP_920824.1| - 2.4e-24 85.7 0.0 3.3e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|119720330|ref|YP_920825.1| - 1.7e-78 263.6 40.5 2.1e-78 263.3 28.0 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|119720331|ref|YP_920826.1| - 1.3e-31 109.7 0.0 1.7e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720331|ref|YP_920826.1| - 3.7e-14 53.3 0.0 2e-07 31.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|119720331|ref|YP_920826.1| - 2.9e-06 27.7 0.0 3.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720331|ref|YP_920826.1| - 6.1e-06 25.6 0.0 1.1e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|119720331|ref|YP_920826.1| - 8e-06 26.0 0.1 0.00015 21.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119720331|ref|YP_920826.1| - 2.5e-05 24.3 0.6 0.0001 22.3 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|119720331|ref|YP_920826.1| - 2.9e-05 23.4 0.0 0.0005 19.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|119720331|ref|YP_920826.1| - 6.6e-05 22.1 0.0 0.0061 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|119720331|ref|YP_920826.1| - 0.00094 20.0 0.1 0.0016 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|119720331|ref|YP_920826.1| - 0.0024 16.5 0.7 0.011 14.3 0.1 2.1 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|119720331|ref|YP_920826.1| - 0.0046 16.3 0.3 0.38 10.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|119720331|ref|YP_920826.1| - 0.023 14.3 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|119720331|ref|YP_920826.1| - 0.025 14.5 0.0 0.29 11.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|119720331|ref|YP_920826.1| - 0.025 13.7 0.0 0.053 12.6 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|119720331|ref|YP_920826.1| - 0.025 14.2 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|119720331|ref|YP_920826.1| - 0.026 14.1 0.0 0.065 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|119720331|ref|YP_920826.1| - 0.029 13.7 0.1 0.4 10.0 0.1 2.1 1 1 1 2 2 2 0 AAA-like domain AAA PF00004.24 gi|119720331|ref|YP_920826.1| - 0.029 14.5 0.0 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|119720331|ref|YP_920826.1| - 0.031 13.9 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|119720331|ref|YP_920826.1| - 0.031 14.0 0.0 0.031 14.0 0.0 2.2 3 1 0 3 3 2 0 Part of AAA domain Sigma70_r4_2 PF08281.7 gi|119720331|ref|YP_920826.1| - 0.042 13.3 0.1 2.5 7.6 0.0 3.0 3 0 0 3 3 2 0 Sigma-70, region 4 AAA_18 PF13238.1 gi|119720331|ref|YP_920826.1| - 0.044 14.0 0.0 0.14 12.4 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|119720331|ref|YP_920826.1| - 0.05 13.5 0.0 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|119720331|ref|YP_920826.1| - 0.065 13.1 0.0 0.11 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|119720331|ref|YP_920826.1| - 0.071 12.5 0.0 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|119720331|ref|YP_920826.1| - 0.073 11.9 0.0 0.16 10.8 0.0 1.5 2 0 0 2 2 1 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|119720331|ref|YP_920826.1| - 0.094 12.4 0.0 1.1 9.0 0.0 2.5 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|119720331|ref|YP_920826.1| - 0.1 12.5 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|119720331|ref|YP_920826.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 E1-E2_ATPase PF00122.15 gi|119720332|ref|YP_920827.1| - 3.2e-58 196.5 9.5 2.4e-55 187.1 3.1 2.8 2 1 0 2 2 2 2 E1-E2 ATPase Hydrolase PF00702.21 gi|119720332|ref|YP_920827.1| - 1.1e-29 104.3 0.0 4e-29 102.5 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|119720332|ref|YP_920827.1| - 1.9e-17 64.0 0.0 6e-17 62.4 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|119720332|ref|YP_920827.1| - 1.4e-15 56.4 0.0 3.7e-15 55.1 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|119720332|ref|YP_920827.1| - 1.2e-07 31.5 0.1 2.2e-06 27.4 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|119720332|ref|YP_920827.1| - 0.00017 21.4 0.0 0.00038 20.3 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD_2 PF13419.1 gi|119720332|ref|YP_920827.1| - 0.1 12.7 0.0 0.44 10.7 0.0 1.8 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Thioredoxin_2 PF13098.1 gi|119720333|ref|YP_920828.1| - 3.6e-08 33.6 0.1 1.2e-06 28.6 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|119720333|ref|YP_920828.1| - 1.1e-06 28.2 0.0 1.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin DsbD PF02683.10 gi|119720333|ref|YP_920828.1| - 1.7e-06 27.8 16.6 1.3e-05 24.8 11.5 2.1 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|119720333|ref|YP_920828.1| - 9.4e-05 22.1 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain VirB8 PF04335.8 gi|119720333|ref|YP_920828.1| - 0.021 14.4 0.6 0.021 14.4 0.4 2.4 3 0 0 3 3 3 0 VirB8 protein RskA PF10099.4 gi|119720333|ref|YP_920828.1| - 7 6.3 13.9 0.041 13.6 0.6 2.7 2 1 0 2 2 2 0 Anti-sigma-K factor rskA SdpI PF13630.1 gi|119720333|ref|YP_920828.1| - 8.7 6.1 8.0 6.4 6.5 0.9 3.0 3 0 0 3 3 3 0 SdpI/YhfL protein family DUF1626 PF07788.6 gi|119720334|ref|YP_920829.1| - 1e-25 89.3 0.1 1.3e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF4143 PF13635.1 gi|119720334|ref|YP_920829.1| - 0.0021 18.2 0.2 0.003 17.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) TraO PF10626.4 gi|119720334|ref|YP_920829.1| - 0.062 12.6 0.1 0.08 12.3 0.1 1.2 1 0 0 1 1 1 0 Conjugative transposon protein TraO SfsA PF03749.8 gi|119720334|ref|YP_920829.1| - 0.094 12.1 0.1 0.12 11.8 0.1 1.1 1 0 0 1 1 1 0 Sugar fermentation stimulation protein DUF3883 PF13020.1 gi|119720334|ref|YP_920829.1| - 0.099 12.3 0.1 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) AhpC-TSA PF00578.16 gi|119720335|ref|YP_920830.1| - 1.2e-39 134.8 0.0 1.4e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|119720335|ref|YP_920830.1| - 3.5e-26 91.4 0.0 4.1e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|119720335|ref|YP_920830.1| - 0.00033 20.6 0.0 0.00042 20.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.1 gi|119720335|ref|YP_920830.1| - 0.0042 16.9 0.0 0.0086 15.9 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|119720335|ref|YP_920830.1| - 0.0047 16.3 0.0 0.0055 16.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) PHP PF02811.14 gi|119720336|ref|YP_920831.1| - 1.4e-09 38.0 0.0 4.2e-09 36.4 0.0 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|119720336|ref|YP_920831.1| - 0.00097 18.5 0.2 0.0053 16.2 0.0 2.3 2 1 0 2 2 2 1 PHP-associated HEPN PF05168.9 gi|119720337|ref|YP_920832.1| - 9.7e-09 35.1 0.0 1.2e-08 34.8 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF4129 PF13559.1 gi|119720337|ref|YP_920832.1| - 0.02 14.8 0.1 0.026 14.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) NTP_transf_2 PF01909.18 gi|119720338|ref|YP_920833.1| - 2.5e-10 40.5 0.7 4.1e-10 39.8 0.5 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain S1-like PF14444.1 gi|119720338|ref|YP_920833.1| - 0.023 14.4 0.3 0.041 13.6 0.2 1.4 1 1 0 1 1 1 0 S1-like Myb_DNA-bind_2 PF08914.6 gi|119720338|ref|YP_920833.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 2 0 0 2 2 2 0 Rap1 Myb domain HEPN PF05168.9 gi|119720339|ref|YP_920834.1| - 1.9e-06 27.7 0.0 2.3e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 HEPN domain CcdA PF07362.7 gi|119720340|ref|YP_920835.1| - 0.0001 22.1 1.3 0.00013 21.7 0.3 1.6 2 0 0 2 2 2 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|119720340|ref|YP_920835.1| - 0.00058 19.6 4.1 0.00058 19.6 2.8 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF4047 PF13256.1 gi|119720340|ref|YP_920835.1| - 0.027 14.4 0.4 0.035 14.0 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) RHH_3 PF12651.2 gi|119720340|ref|YP_920835.1| - 0.039 13.7 1.7 0.049 13.3 0.6 1.7 1 1 0 1 1 1 0 Ribbon-helix-helix domain ATP_bind_4 PF01902.12 gi|119720340|ref|YP_920835.1| - 0.049 12.9 0.2 0.057 12.7 0.1 1.2 1 0 0 1 1 1 0 ATP-binding region DUF3619 PF12279.3 gi|119720340|ref|YP_920835.1| - 0.08 13.0 1.2 0.11 12.6 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) GRIM-19 PF06212.7 gi|119720340|ref|YP_920835.1| - 0.082 12.6 0.3 0.086 12.5 0.2 1.2 1 0 0 1 1 1 0 GRIM-19 protein ALMT PF11744.3 gi|119720340|ref|YP_920835.1| - 0.13 10.8 0.0 0.15 10.6 0.0 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter CRF PF00473.12 gi|119720340|ref|YP_920835.1| - 2.3 8.3 8.6 0.59 10.2 3.1 2.2 2 0 0 2 2 2 0 Corticotropin-releasing factor family PIN PF01850.16 gi|119720341|ref|YP_920836.1| - 6.8e-09 36.0 0.2 8.4e-09 35.8 0.1 1.2 1 0 0 1 1 1 1 PIN domain DUF948 PF06103.6 gi|119720342|ref|YP_920837.1| - 0.00013 21.7 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) Prefoldin_3 PF13758.1 gi|119720342|ref|YP_920837.1| - 0.056 13.2 0.0 0.16 11.7 0.0 1.7 1 1 0 1 1 1 0 Prefoldin subunit Dynamitin PF04912.9 gi|119720342|ref|YP_920837.1| - 0.15 10.7 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 Dynamitin MFS_1 PF07690.11 gi|119720343|ref|YP_920838.1| - 0.59 8.7 37.1 0.038 12.6 21.4 1.9 1 1 1 2 2 2 0 Major Facilitator Superfamily DUF4501 PF14946.1 gi|119720344|ref|YP_920839.1| - 0.1 12.1 0.3 0.17 11.3 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) DUF606 PF04657.8 gi|119720344|ref|YP_920839.1| - 2.2 8.3 11.4 1.2 9.2 3.3 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF606 Got1 PF04178.7 gi|119720344|ref|YP_920839.1| - 2.5 8.2 13.2 0.2 11.7 3.6 2.4 2 1 0 2 2 2 0 Got1/Sft2-like family DUF1212 PF06738.7 gi|119720344|ref|YP_920839.1| - 3.8 6.9 10.5 2.8 7.3 0.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1212) DUF87 PF01935.12 gi|119720345|ref|YP_920840.1| - 3e-14 53.4 0.0 8e-14 52.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|119720345|ref|YP_920840.1| - 3.5e-12 46.3 0.0 3.2e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|119720345|ref|YP_920840.1| - 5.4e-06 26.0 0.0 2.4e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|119720345|ref|YP_920840.1| - 0.025 13.2 0.0 0.038 12.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|119720346|ref|YP_920841.1| - 5.9e-06 25.9 0.0 9.7e-05 21.9 0.0 2.2 1 1 0 1 1 1 1 NurA domain MarR_2 PF12802.2 gi|119720347|ref|YP_920842.1| - 0.028 14.1 0.2 0.14 11.8 0.2 2.2 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|119720347|ref|YP_920842.1| - 0.045 14.0 0.5 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain PaREP1 PF05942.6 gi|119720348|ref|YP_920843.1| - 3.1e-05 23.8 1.0 3.1e-05 23.8 0.7 2.0 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family COX2-transmemb PF09125.5 gi|119720348|ref|YP_920843.1| - 0.078 12.5 0.6 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane NAD_synthase PF02540.12 gi|119720349|ref|YP_920844.1| - 1.4e-72 243.5 0.0 1.6e-72 243.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|119720349|ref|YP_920844.1| - 9.1e-07 28.6 0.0 1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|119720349|ref|YP_920844.1| - 2.1e-05 23.2 0.0 0.012 14.1 0.0 2.5 2 0 0 2 2 2 2 tRNA methyl transferase Sigma70_r4 PF04545.11 gi|119720349|ref|YP_920844.1| - 0.0081 15.4 0.2 0.034 13.4 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|119720349|ref|YP_920844.1| - 0.014 14.8 0.0 0.36 10.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|119720349|ref|YP_920844.1| - 0.078 12.6 0.1 16 5.3 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain ThiI PF02568.9 gi|119720349|ref|YP_920844.1| - 0.09 12.2 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CN_hydrolase PF00795.17 gi|119720350|ref|YP_920845.1| - 5.6e-20 71.4 0.0 1.1e-19 70.5 0.0 1.4 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase ABC2_membrane_3 PF12698.2 gi|119720351|ref|YP_920846.1| - 1.4e-24 86.8 12.4 2.4e-24 85.9 8.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|119720351|ref|YP_920846.1| - 6.2e-19 68.0 19.8 4.7e-16 58.5 7.4 2.4 3 0 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|119720351|ref|YP_920846.1| - 2.9e-08 32.9 15.6 4.6e-08 32.2 10.8 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720351|ref|YP_920846.1| - 1.4e-07 30.9 11.3 3e-07 29.8 7.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein SBP_bac_3 PF00497.15 gi|119720351|ref|YP_920846.1| - 0.091 11.9 0.1 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 ABC_tran PF00005.22 gi|119720352|ref|YP_920847.1| - 3.8e-27 95.2 0.0 5.8e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720352|ref|YP_920847.1| - 2.8e-14 53.7 0.0 2.9e-11 43.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720352|ref|YP_920847.1| - 7.8e-05 22.1 0.1 0.0002 20.7 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119720352|ref|YP_920847.1| - 0.00031 20.0 0.0 0.14 11.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|119720352|ref|YP_920847.1| - 0.00053 19.8 0.1 0.0066 16.3 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|119720352|ref|YP_920847.1| - 0.00061 19.2 0.0 0.0024 17.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|119720352|ref|YP_920847.1| - 0.0011 18.8 0.0 0.85 9.5 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|119720352|ref|YP_920847.1| - 0.0041 17.1 0.4 0.53 10.2 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|119720352|ref|YP_920847.1| - 0.0054 16.1 0.0 0.31 10.4 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|119720352|ref|YP_920847.1| - 0.022 14.2 0.1 0.3 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|119720352|ref|YP_920847.1| - 0.026 14.8 0.0 0.047 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|119720352|ref|YP_920847.1| - 0.038 13.6 0.1 3.2 7.3 0.1 2.3 2 0 0 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|119720352|ref|YP_920847.1| - 0.04 13.7 0.4 0.18 11.6 0.1 2.1 3 0 0 3 3 2 0 AAA domain AAA_19 PF13245.1 gi|119720352|ref|YP_920847.1| - 0.045 13.4 0.5 1.3 8.8 0.1 2.6 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|119720352|ref|YP_920847.1| - 0.086 12.4 0.2 0.46 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|119720352|ref|YP_920847.1| - 0.15 12.1 0.0 2.9 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain Asp_protease_2 PF13650.1 gi|119720353|ref|YP_920848.1| - 7.9e-11 42.3 0.1 2.6e-10 40.6 0.0 1.6 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|119720353|ref|YP_920848.1| - 9.4e-08 31.7 0.4 2.4e-07 30.4 0.0 1.8 3 0 0 3 3 3 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|119720353|ref|YP_920848.1| - 0.004 17.0 0.0 0.0048 16.7 0.0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp_protease PF09668.5 gi|119720353|ref|YP_920848.1| - 0.02 14.4 0.0 0.026 14.0 0.0 1.3 1 1 0 1 1 1 0 Aspartyl protease AdoHcyase PF05221.12 gi|119720353|ref|YP_920848.1| - 0.022 13.7 0.0 1.7 7.5 0.0 2.0 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase Peptidase_A3 PF02160.10 gi|119720353|ref|YP_920848.1| - 0.085 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) Peptidase_U4 PF03419.8 gi|119720353|ref|YP_920848.1| - 0.13 11.3 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA UbiA PF01040.13 gi|119720354|ref|YP_920849.1| - 1.1e-35 123.1 28.1 1.4e-35 122.8 19.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MauE PF07291.6 gi|119720354|ref|YP_920849.1| - 0.36 10.4 14.4 0.074 12.6 2.2 3.4 2 1 1 3 3 3 0 Methylamine utilisation protein MauE CTP_transf_1 PF01148.15 gi|119720355|ref|YP_920850.1| - 5.9e-06 26.1 9.0 5.4e-05 22.9 6.3 1.9 1 1 0 1 1 1 1 Cytidylyltransferase family BPD_transp_1 PF00528.17 gi|119720356|ref|YP_920851.1| - 1.5e-13 50.6 19.3 1.5e-13 50.6 13.4 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720357|ref|YP_920852.1| - 1.6e-17 63.6 20.6 1.6e-17 63.6 14.3 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|119720358|ref|YP_920853.1| - 8.7e-52 176.5 1.8 1.1e-51 176.2 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119720358|ref|YP_920853.1| - 1.7e-42 146.3 9.7 2.4e-42 145.7 6.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|119720358|ref|YP_920853.1| - 7.8e-08 31.9 0.1 1.5e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF1510 PF07423.6 gi|119720358|ref|YP_920853.1| - 0.085 12.2 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Alpha-amylase PF00128.19 gi|119720359|ref|YP_920854.1| - 2.1e-76 257.3 6.4 3e-76 256.8 4.5 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain CBM_20 PF00686.14 gi|119720359|ref|YP_920854.1| - 5.1e-21 74.0 0.6 2.2e-20 72.0 0.0 2.5 2 0 0 2 2 2 1 Starch binding domain TIG PF01833.19 gi|119720359|ref|YP_920854.1| - 4.5e-09 36.1 1.1 1.3e-08 34.7 0.8 1.8 1 0 0 1 1 1 1 IPT/TIG domain Alpha-amylase_C PF02806.13 gi|119720359|ref|YP_920854.1| - 2.5e-06 27.5 0.2 8e-06 25.9 0.1 1.9 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain DUF3679 PF12438.3 gi|119720359|ref|YP_920854.1| - 0.077 12.3 0.2 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3679) TPP_enzyme_C PF02775.16 gi|119720360|ref|YP_920855.1| - 3.3e-29 101.4 0.0 5.9e-29 100.6 0.0 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|119720360|ref|YP_920855.1| - 4.8e-16 58.4 0.5 8.5e-16 57.6 0.3 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|119720361|ref|YP_920856.1| - 1.2e-54 185.2 0.0 1.8e-54 184.7 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|119720361|ref|YP_920856.1| - 6.2e-29 101.0 0.2 1.1e-28 100.2 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|119720361|ref|YP_920856.1| - 1.4e-08 34.4 1.2 5.6e-08 32.4 0.8 1.9 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|119720361|ref|YP_920856.1| - 0.0024 17.7 0.0 0.0057 16.5 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Transket_pyr PF02779.19 gi|119720361|ref|YP_920856.1| - 0.059 12.8 0.2 0.15 11.5 0.1 1.6 1 1 0 1 1 1 0 Transketolase, pyrimidine binding domain Rubredoxin PF00301.15 gi|119720362|ref|YP_920857.1| - 1.4e-25 88.8 2.6 1.6e-25 88.7 1.8 1.1 1 0 0 1 1 1 1 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|119720362|ref|YP_920857.1| - 1.3e-05 24.4 0.7 0.074 12.3 0.0 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.10 gi|119720362|ref|YP_920857.1| - 0.0026 17.2 0.2 0.14 11.7 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger zf-nanos PF05741.8 gi|119720362|ref|YP_920857.1| - 0.013 15.4 0.9 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain RRN7 PF11781.3 gi|119720362|ref|YP_920857.1| - 0.016 14.6 0.6 1.2 8.6 0.1 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|119720362|ref|YP_920857.1| - 0.017 14.7 0.2 5.4 6.7 0.0 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|119720362|ref|YP_920857.1| - 0.018 15.2 4.6 0.53 10.6 1.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|119720362|ref|YP_920857.1| - 0.019 14.9 1.8 2.6 8.0 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|119720362|ref|YP_920857.1| - 0.024 14.0 3.8 0.13 11.6 1.3 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF2296 PF10058.4 gi|119720362|ref|YP_920857.1| - 0.025 14.3 2.3 4 7.2 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2_4 PF13894.1 gi|119720362|ref|YP_920857.1| - 0.027 14.8 1.2 6.4 7.3 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.1 gi|119720362|ref|YP_920857.1| - 0.027 14.1 1.3 2.8 7.7 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|119720362|ref|YP_920857.1| - 0.03 13.8 1.6 0.95 9.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|119720362|ref|YP_920857.1| - 0.037 13.4 2.8 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|119720362|ref|YP_920857.1| - 0.039 13.7 0.9 1.4 8.8 0.6 2.1 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|119720362|ref|YP_920857.1| - 0.046 12.9 2.5 0.74 9.1 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zf-MIZ PF02891.15 gi|119720362|ref|YP_920857.1| - 0.051 13.1 1.3 0.51 9.8 0.2 2.0 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger DUF1610 PF07754.6 gi|119720362|ref|YP_920857.1| - 0.053 13.6 6.9 1.1 9.4 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Elf1 PF05129.8 gi|119720362|ref|YP_920857.1| - 0.061 13.0 0.4 3.9 7.2 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Cys_rich_CPCC PF14206.1 gi|119720362|ref|YP_920857.1| - 0.074 12.6 1.3 4.1 7.0 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPCC zf-C2H2_3 PF13878.1 gi|119720362|ref|YP_920857.1| - 0.088 12.3 1.1 0.43 10.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF35_N PF12172.3 gi|119720362|ref|YP_920857.1| - 0.099 12.5 1.6 6.2 6.8 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2082 PF09855.4 gi|119720362|ref|YP_920857.1| - 0.11 12.4 1.9 0.7 9.7 0.3 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ISL3 PF14690.1 gi|119720362|ref|YP_920857.1| - 0.12 12.4 1.2 6.4 6.9 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|119720362|ref|YP_920857.1| - 0.13 11.9 3.0 1.1 9.0 0.8 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2 PF00096.21 gi|119720362|ref|YP_920857.1| - 0.13 12.6 3.4 2.2 8.7 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-RanBP PF00641.13 gi|119720362|ref|YP_920857.1| - 0.13 11.3 2.7 0.51 9.4 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others PHD PF00628.24 gi|119720362|ref|YP_920857.1| - 0.14 11.8 1.4 3 7.6 0.0 2.1 2 0 0 2 2 2 0 PHD-finger TFIIS_C PF01096.13 gi|119720362|ref|YP_920857.1| - 0.17 11.5 2.4 3.8 7.2 0.4 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rad50_zn_hook PF04423.9 gi|119720362|ref|YP_920857.1| - 0.23 10.9 1.5 0.82 9.1 0.1 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc_ribbon_4 PF13717.1 gi|119720362|ref|YP_920857.1| - 0.35 10.5 2.1 5.8 6.7 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|119720362|ref|YP_920857.1| - 0.36 10.5 4.2 7.6 6.3 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|119720362|ref|YP_920857.1| - 0.38 10.3 2.1 6 6.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain ADK_lid PF05191.9 gi|119720362|ref|YP_920857.1| - 0.55 9.9 3.4 5.3 6.7 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_Tnp_IS1595 PF12760.2 gi|119720362|ref|YP_920857.1| - 0.73 9.6 3.9 3.3 7.5 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|119720362|ref|YP_920857.1| - 2.6 7.7 7.2 12 5.5 2.8 2.2 2 0 0 2 2 2 0 HIT zinc finger Alpha-amylase PF00128.19 gi|119720363|ref|YP_920858.1| - 4.4e-59 200.4 0.0 6e-59 199.9 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.9 gi|119720363|ref|YP_920858.1| - 1.7e-08 34.4 0.0 1.3e-07 31.5 0.0 2.2 2 0 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain DUF3459 PF11941.3 gi|119720363|ref|YP_920858.1| - 5.6e-07 29.5 0.2 1.5e-06 28.2 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) NTP_transf_2 PF01909.18 gi|119720364|ref|YP_920859.1| - 4e-12 46.3 0.4 5.8e-12 45.7 0.3 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|119720364|ref|YP_920859.1| - 0.0027 17.3 0.1 0.0032 17.0 0.0 1.3 1 1 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.1 gi|119720364|ref|YP_920859.1| - 0.066 13.2 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm DUF488 PF04343.8 gi|119720365|ref|YP_920860.1| - 7.7e-27 94.0 0.0 9.3e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 ABC_tran PF00005.22 gi|119720367|ref|YP_920862.1| - 7e-27 94.3 0.0 1.1e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720367|ref|YP_920862.1| - 2.8e-12 47.1 0.0 1.8e-05 24.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA PF00004.24 gi|119720367|ref|YP_920862.1| - 0.0031 17.7 0.0 0.014 15.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|119720367|ref|YP_920862.1| - 0.0038 16.3 0.0 0.29 10.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|119720367|ref|YP_920862.1| - 0.0075 15.7 0.1 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|119720367|ref|YP_920862.1| - 0.028 14.7 0.1 0.044 14.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|119720367|ref|YP_920862.1| - 0.032 13.9 0.1 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|119720367|ref|YP_920862.1| - 0.038 13.4 0.1 0.069 12.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|119720367|ref|YP_920862.1| - 0.045 13.4 0.1 0.41 10.2 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_30 PF13604.1 gi|119720367|ref|YP_920862.1| - 0.047 13.2 0.0 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|119720367|ref|YP_920862.1| - 0.077 12.4 0.0 1.9 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_28 PF13521.1 gi|119720367|ref|YP_920862.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|119720367|ref|YP_920862.1| - 0.14 12.9 0.0 0.22 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|119720367|ref|YP_920862.1| - 0.15 12.0 0.1 0.38 10.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain PadR PF03551.9 gi|119720369|ref|YP_920864.1| - 5.9e-09 35.5 0.1 1.1e-08 34.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Peptidase_C93 PF06035.6 gi|119720369|ref|YP_920864.1| - 0.0016 17.9 0.0 0.0021 17.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP HTH_45 PF14947.1 gi|119720369|ref|YP_920864.1| - 0.013 15.3 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.1 gi|119720369|ref|YP_920864.1| - 0.051 13.6 0.1 0.099 12.7 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_27 PF13463.1 gi|119720369|ref|YP_920864.1| - 0.098 12.9 0.0 0.32 11.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain Aldolase_II PF00596.16 gi|119720370|ref|YP_920865.1| - 5.1e-51 172.8 0.0 6e-51 172.6 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Usp PF00582.21 gi|119720371|ref|YP_920866.1| - 6.1e-36 123.6 3.4 6.9e-36 123.5 2.4 1.0 1 0 0 1 1 1 1 Universal stress protein family MTTB PF06253.6 gi|119720372|ref|YP_920867.1| - 8.7e-74 248.0 0.0 1.1e-73 247.8 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.14 gi|119720373|ref|YP_920868.1| - 1.4e-25 89.4 0.7 2.2e-25 88.8 0.5 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|119720373|ref|YP_920868.1| - 1.2e-22 79.6 0.2 2.4e-22 78.7 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain FGGY_C PF02782.11 gi|119720373|ref|YP_920868.1| - 0.013 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Glyco_tran_WecB PF03808.8 gi|119720373|ref|YP_920868.1| - 0.044 13.1 0.1 0.088 12.2 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Pyridox_oxidase PF01243.15 gi|119720374|ref|YP_920869.1| - 0.011 15.6 0.0 0.051 13.6 0.0 2.1 2 1 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase Radical_SAM PF04055.16 gi|119720375|ref|YP_920870.1| - 2.2e-13 50.6 0.0 4.3e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily OrfB_Zn_ribbon PF07282.6 gi|119720375|ref|YP_920870.1| - 0.00034 20.2 1.4 0.00034 20.2 1.0 2.5 3 1 0 3 3 1 1 Putative transposase DNA-binding domain Fer4_14 PF13394.1 gi|119720375|ref|YP_920870.1| - 0.0031 17.5 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|119720375|ref|YP_920870.1| - 0.015 15.0 0.1 0.015 15.0 0.1 2.9 3 0 0 3 3 3 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|119720375|ref|YP_920870.1| - 0.022 14.2 8.7 0.27 10.7 0.1 3.6 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-HIT PF04438.11 gi|119720375|ref|YP_920870.1| - 0.053 13.1 0.1 0.053 13.1 0.1 3.4 5 0 0 5 5 3 0 HIT zinc finger Fer4_12 PF13353.1 gi|119720375|ref|YP_920870.1| - 0.055 13.5 0.0 0.17 12.0 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-ISL3 PF14690.1 gi|119720375|ref|YP_920870.1| - 0.12 12.4 9.1 0.29 11.2 0.0 3.4 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.11 gi|119720375|ref|YP_920870.1| - 0.26 11.0 0.1 0.26 11.0 0.1 3.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|119720375|ref|YP_920870.1| - 0.27 10.5 7.1 0.34 10.2 2.5 2.8 2 1 1 3 3 3 0 TFIIB zinc-binding IL12p40_C PF10420.4 gi|119720375|ref|YP_920870.1| - 0.31 11.1 1.4 0.68 10.0 1.0 1.5 1 0 0 1 1 1 0 Cytokine interleukin-12p40 C-terminus zinc_ribbon_2 PF13240.1 gi|119720375|ref|YP_920870.1| - 0.31 10.5 11.7 2.1 7.9 0.3 3.6 3 0 0 3 3 3 0 zinc-ribbon domain CpXC PF14353.1 gi|119720375|ref|YP_920870.1| - 0.43 10.5 1.6 16 5.5 0.0 2.9 3 0 0 3 3 3 0 CpXC protein zf-ribbon_3 PF13248.1 gi|119720375|ref|YP_920870.1| - 2.3 7.5 17.3 1.4 8.2 0.0 4.4 5 0 0 5 5 5 0 zinc-ribbon domain UPF0547 PF10571.4 gi|119720375|ref|YP_920870.1| - 2.5 7.8 11.5 3.1 7.5 0.5 3.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1 PF03811.8 gi|119720375|ref|YP_920870.1| - 3.5 7.1 11.6 3.7 7.1 0.2 3.5 3 0 0 3 3 3 0 InsA N-terminal domain zf-NADH-PPase PF09297.6 gi|119720375|ref|YP_920870.1| - 4 7.0 11.2 6.7 6.3 0.2 3.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-CCHC_5 PF14787.1 gi|119720375|ref|YP_920870.1| - 5.4 6.5 10.4 1.4 8.5 1.2 2.6 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-C2H2_4 PF13894.1 gi|119720375|ref|YP_920870.1| - 6 7.4 9.2 12 6.4 0.1 3.7 3 0 0 3 3 3 0 C2H2-type zinc finger Auto_anti-p27 PF06677.7 gi|119720375|ref|YP_920870.1| - 6.3 6.6 6.2 8.3 6.2 0.0 3.0 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF364 PF04016.7 gi|119720376|ref|YP_920871.1| - 4e-39 133.2 0.0 5.4e-39 132.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|119720376|ref|YP_920871.1| - 1.3e-20 73.3 0.1 2.2e-20 72.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) PIN PF01850.16 gi|119720377|ref|YP_920872.1| - 3e-17 63.0 0.4 3.7e-17 62.7 0.3 1.1 1 0 0 1 1 1 1 PIN domain PSD2 PF07624.6 gi|119720378|ref|YP_920873.1| - 0.14 11.8 0.1 1.4 8.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1585) ABC2_membrane PF01061.19 gi|119720379|ref|YP_920874.1| - 2.3e-12 46.5 15.2 3.2e-12 46.0 10.5 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|119720379|ref|YP_920874.1| - 2.8e-06 26.6 13.4 3.9e-06 26.1 9.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|119720380|ref|YP_920875.1| - 9.6e-26 90.7 0.0 1.3e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720380|ref|YP_920875.1| - 2e-10 41.1 0.0 3.5e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|119720380|ref|YP_920875.1| - 0.00011 21.8 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 Rad17 PF03215.10 gi|119720380|ref|YP_920875.1| - 0.00034 19.4 0.0 0.0005 18.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|119720380|ref|YP_920875.1| - 0.00099 19.1 0.1 0.0017 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|119720380|ref|YP_920875.1| - 0.0027 17.8 0.0 0.011 15.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|119720380|ref|YP_920875.1| - 0.0044 16.1 0.0 0.0066 15.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|119720380|ref|YP_920875.1| - 0.0058 16.1 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|119720380|ref|YP_920875.1| - 0.0065 16.3 0.0 0.048 13.5 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|119720380|ref|YP_920875.1| - 0.0079 15.3 0.0 0.96 8.5 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|119720380|ref|YP_920875.1| - 0.016 14.4 0.0 1.6 7.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|119720380|ref|YP_920875.1| - 0.027 14.8 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|119720380|ref|YP_920875.1| - 0.027 14.1 0.2 2.9 7.6 0.1 2.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|119720380|ref|YP_920875.1| - 0.037 13.9 0.0 0.087 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|119720380|ref|YP_920875.1| - 0.045 13.5 2.7 0.076 12.7 0.1 2.6 2 1 1 3 3 3 0 Part of AAA domain AAA PF00004.24 gi|119720380|ref|YP_920875.1| - 0.05 13.8 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.7 gi|119720380|ref|YP_920875.1| - 0.051 12.9 0.0 0.099 11.9 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.1 gi|119720380|ref|YP_920875.1| - 0.088 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|119720380|ref|YP_920875.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|119720380|ref|YP_920875.1| - 0.14 11.8 0.1 0.89 9.2 0.0 2.0 2 0 0 2 2 2 0 NTPase PIN PF01850.16 gi|119720382|ref|YP_920877.1| - 6.2e-14 52.3 0.1 8.7e-14 51.8 0.1 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|119720382|ref|YP_920877.1| - 0.00036 21.1 0.1 0.00092 19.8 0.0 1.5 1 1 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|119720383|ref|YP_920878.1| - 3.4e-11 42.5 2.9 3.4e-11 42.5 2.0 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE AbrB-like PF14250.1 gi|119720383|ref|YP_920878.1| - 0.022 14.6 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 AbrB-like transcriptional regulator SymE_toxin PF08845.5 gi|119720383|ref|YP_920878.1| - 0.092 12.6 0.5 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Toxin SymE, type I toxin-antitoxin system KdpA PF03814.10 gi|119720384|ref|YP_920879.1| - 4.9e-104 348.3 26.7 9.1e-69 231.9 12.7 2.8 1 1 1 2 2 2 2 Potassium-transporting ATPase A subunit TrkH PF02386.11 gi|119720384|ref|YP_920879.1| - 7.1e-05 21.5 8.1 7.1e-05 21.5 5.6 2.5 2 0 0 2 2 2 1 Cation transport protein FANCI_S1 PF14675.1 gi|119720384|ref|YP_920879.1| - 0.17 11.1 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 FANCI solenoid 1 E1-E2_ATPase PF00122.15 gi|119720385|ref|YP_920880.1| - 1.2e-38 132.4 0.4 1.2e-38 132.4 0.3 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|119720385|ref|YP_920880.1| - 7.2e-35 121.3 5.0 2.2e-34 119.7 3.5 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|119720385|ref|YP_920880.1| - 3.1e-16 60.0 0.1 3.9e-15 56.5 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|119720385|ref|YP_920880.1| - 1.1e-09 38.2 0.9 2.5e-05 23.9 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|119720385|ref|YP_920880.1| - 0.021 14.6 0.0 0.069 13.0 0.0 1.9 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.13 gi|119720385|ref|YP_920880.1| - 0.058 13.1 0.0 0.21 11.3 0.0 1.9 1 1 1 2 2 2 0 DNA photolyase Aminotran_4 PF01063.14 gi|119720385|ref|YP_920880.1| - 0.066 12.6 0.0 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class IV Vault PF01505.13 gi|119720385|ref|YP_920880.1| - 0.1 12.6 0.5 0.54 10.3 0.0 2.4 2 0 0 2 2 2 0 Major Vault Protein repeat Imm3 PF14425.1 gi|119720385|ref|YP_920880.1| - 0.15 12.0 0.1 0.32 10.9 0.1 1.5 1 0 0 1 1 1 0 Immunity protein Imm3 KdpC PF02669.10 gi|119720386|ref|YP_920881.1| - 0.029 14.0 0.2 0.4 10.3 0.0 2.0 2 0 0 2 2 2 0 K+-transporting ATPase, c chain GATase_4 PF13230.1 gi|119720387|ref|YP_920882.1| - 4.8e-08 32.0 0.0 7.4e-08 31.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|119720387|ref|YP_920882.1| - 5e-05 23.2 0.0 7.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|119720387|ref|YP_920882.1| - 0.00083 18.1 0.6 0.0018 17.0 0.2 1.6 1 1 1 2 2 2 1 Glutamine amidotransferases class-II CorA PF01544.13 gi|119720389|ref|YP_920884.1| - 7.7e-45 153.1 0.0 1.5e-44 152.1 0.0 1.4 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein Antimicrobial10 PF08105.6 gi|119720389|ref|YP_920884.1| - 0.25 10.9 1.4 6.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Metchnikowin family SBP_bac_6 PF13343.1 gi|119720390|ref|YP_920885.1| - 3.6e-35 121.4 3.6 1.5e-34 119.4 0.3 2.5 2 1 1 3 3 3 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|119720390|ref|YP_920885.1| - 1.1e-26 94.1 0.2 1.1e-26 94.1 0.1 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119720390|ref|YP_920885.1| - 5.2e-22 78.9 3.2 5.2e-22 78.9 2.2 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119720390|ref|YP_920885.1| - 2.6e-19 69.7 0.0 9.9e-19 67.8 0.0 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF4398 PF14346.1 gi|119720390|ref|YP_920885.1| - 0.00068 19.6 3.7 0.0013 18.7 2.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) Endomucin PF07010.7 gi|119720390|ref|YP_920885.1| - 0.015 14.6 0.1 0.028 13.7 0.0 1.4 1 0 0 1 1 1 0 Endomucin ABC_tran PF00005.22 gi|119720391|ref|YP_920886.1| - 4.2e-38 130.7 0.0 6.8e-38 130.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|119720391|ref|YP_920886.1| - 6.2e-13 48.5 0.2 2.3e-12 46.7 0.1 2.1 1 1 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|119720391|ref|YP_920886.1| - 6.2e-12 45.4 6.8 2.4e-07 30.7 0.0 3.1 3 0 0 3 3 3 2 TOBE domain AAA_21 PF13304.1 gi|119720391|ref|YP_920886.1| - 3.8e-11 43.4 0.0 2e-08 34.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain TOBE_3 PF12857.2 gi|119720391|ref|YP_920886.1| - 1.9e-06 27.6 1.2 3.8e-05 23.4 0.1 2.6 2 0 0 2 2 2 1 TOBE-like domain AAA_16 PF13191.1 gi|119720391|ref|YP_920886.1| - 0.00075 19.5 0.5 0.0018 18.3 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|119720391|ref|YP_920886.1| - 0.0014 18.3 0.0 0.0031 17.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|119720391|ref|YP_920886.1| - 0.002 17.8 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase Rad17 PF03215.10 gi|119720391|ref|YP_920886.1| - 0.0039 15.9 0.0 0.0062 15.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|119720391|ref|YP_920886.1| - 0.0048 16.7 0.0 0.012 15.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|119720391|ref|YP_920886.1| - 0.0071 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|119720391|ref|YP_920886.1| - 0.0072 17.1 0.1 0.015 16.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|119720391|ref|YP_920886.1| - 0.0077 15.4 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|119720391|ref|YP_920886.1| - 0.0099 14.9 0.0 0.61 9.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|119720391|ref|YP_920886.1| - 0.01 16.0 0.1 0.046 13.9 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|119720391|ref|YP_920886.1| - 0.015 15.0 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|119720391|ref|YP_920886.1| - 0.019 14.6 0.0 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|119720391|ref|YP_920886.1| - 0.023 13.8 0.0 0.055 12.6 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|119720391|ref|YP_920886.1| - 0.034 13.5 0.0 0.082 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|119720391|ref|YP_920886.1| - 0.036 14.2 0.4 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|119720391|ref|YP_920886.1| - 0.041 12.5 0.0 0.055 12.1 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit AAA_23 PF13476.1 gi|119720391|ref|YP_920886.1| - 0.052 13.8 0.0 0.09 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119720391|ref|YP_920886.1| - 0.06 13.6 0.0 0.2 11.9 0.0 2.0 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.4 gi|119720391|ref|YP_920886.1| - 0.06 12.8 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation UPF0079 PF02367.12 gi|119720391|ref|YP_920886.1| - 0.072 12.7 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|119720391|ref|YP_920886.1| - 0.1 12.5 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|119720391|ref|YP_920886.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119720391|ref|YP_920886.1| - 0.12 12.2 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|119720391|ref|YP_920886.1| - 0.16 10.8 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|119720392|ref|YP_920887.1| - 2.2e-26 92.5 42.4 1.9e-14 53.5 12.7 3.3 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component DUF2648 PF10855.3 gi|119720392|ref|YP_920887.1| - 6 6.3 6.4 1.7 8.1 0.5 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2648) BPL_LplA_LipB PF03099.14 gi|119720393|ref|YP_920888.1| - 3.8e-22 78.6 0.3 1.3e-21 76.8 0.0 1.9 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|119720393|ref|YP_920888.1| - 1.1e-13 50.6 0.1 2.2e-13 49.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|119720393|ref|YP_920888.1| - 1.5e-08 34.1 3.0 3.4e-08 33.0 2.1 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain MarR_2 PF12802.2 gi|119720393|ref|YP_920888.1| - 1.9e-07 30.6 0.4 4.7e-07 29.3 0.3 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|119720393|ref|YP_920888.1| - 9e-05 21.9 0.0 0.00024 20.6 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|119720393|ref|YP_920888.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|119720393|ref|YP_920888.1| - 0.003 17.8 0.0 0.0064 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|119720393|ref|YP_920888.1| - 0.0082 15.5 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|119720393|ref|YP_920888.1| - 0.011 15.2 0.9 0.021 14.2 0.6 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|119720393|ref|YP_920888.1| - 0.046 13.4 0.2 0.15 11.8 0.1 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|119720393|ref|YP_920888.1| - 0.053 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|119720393|ref|YP_920888.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|119720393|ref|YP_920888.1| - 0.11 12.6 0.4 2.5 8.3 0.2 2.4 2 0 0 2 2 2 0 FaeA-like protein Cytochrom_C_asm PF01578.15 gi|119720394|ref|YP_920889.1| - 0.12 11.8 3.5 0.16 11.5 2.4 1.3 1 0 0 1 1 1 0 Cytochrome C assembly protein DUF697 PF05128.7 gi|119720394|ref|YP_920889.1| - 0.58 9.6 6.3 0.53 9.7 0.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF697) ABC_tran PF00005.22 gi|119720395|ref|YP_920890.1| - 2e-38 131.8 0.0 1.1e-19 71.0 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|119720395|ref|YP_920890.1| - 1.6e-24 87.3 5.8 6.7e-09 36.1 0.0 4.1 3 1 0 4 4 4 4 AAA domain AAA_22 PF13401.1 gi|119720395|ref|YP_920890.1| - 7.2e-11 42.3 0.4 0.00037 20.6 0.1 3.4 2 2 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|119720395|ref|YP_920890.1| - 3.6e-10 39.1 0.1 0.00018 20.4 0.1 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_17 PF13207.1 gi|119720395|ref|YP_920890.1| - 2.5e-09 37.9 0.3 0.0031 18.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|119720395|ref|YP_920890.1| - 3.6e-09 36.0 1.3 0.0015 18.0 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|119720395|ref|YP_920890.1| - 6.3e-09 36.4 0.0 0.0012 19.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|119720395|ref|YP_920890.1| - 3.7e-08 32.8 0.0 0.017 14.1 0.0 3.2 3 0 0 3 3 3 2 AAA ATPase domain AAA_19 PF13245.1 gi|119720395|ref|YP_920890.1| - 7e-08 32.1 6.2 0.0021 17.7 0.1 3.7 3 0 0 3 3 3 2 Part of AAA domain AAA_16 PF13191.1 gi|119720395|ref|YP_920890.1| - 1.3e-07 31.8 4.4 0.0055 16.7 0.1 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|119720395|ref|YP_920890.1| - 2e-07 31.3 1.2 0.012 15.9 0.3 2.6 2 1 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|119720395|ref|YP_920890.1| - 3.2e-07 30.1 1.0 0.011 15.3 0.0 2.7 3 0 0 3 3 2 2 NACHT domain AAA_25 PF13481.1 gi|119720395|ref|YP_920890.1| - 4.8e-07 29.3 0.2 0.0091 15.4 0.1 2.9 4 0 0 4 4 2 2 AAA domain SMC_N PF02463.14 gi|119720395|ref|YP_920890.1| - 1.5e-06 27.6 0.0 0.66 9.1 0.0 3.6 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|119720395|ref|YP_920890.1| - 1.7e-06 27.7 0.4 0.025 14.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|119720395|ref|YP_920890.1| - 4e-06 26.5 2.8 0.021 14.5 0.2 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|119720395|ref|YP_920890.1| - 1.4e-05 24.9 0.1 0.028 14.1 0.0 2.3 2 0 0 2 2 2 2 Archaeal ATPase UPF0079 PF02367.12 gi|119720395|ref|YP_920890.1| - 1.7e-05 24.4 0.9 0.14 11.7 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|119720395|ref|YP_920890.1| - 2e-05 24.1 0.5 0.087 12.2 0.0 3.1 4 0 0 4 4 3 2 AAA-like domain AAA_28 PF13521.1 gi|119720395|ref|YP_920890.1| - 4.8e-05 23.3 3.4 0.14 12.1 0.3 2.9 3 0 0 3 3 2 2 AAA domain NTPase_1 PF03266.10 gi|119720395|ref|YP_920890.1| - 6.5e-05 22.7 3.6 0.099 12.3 0.2 2.4 2 0 0 2 2 2 2 NTPase AAA PF00004.24 gi|119720395|ref|YP_920890.1| - 8.4e-05 22.7 0.8 0.51 10.5 0.2 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|119720395|ref|YP_920890.1| - 0.00015 20.9 1.6 0.057 12.6 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|119720395|ref|YP_920890.1| - 0.00018 21.3 0.8 0.32 10.9 0.1 2.7 3 0 0 3 3 2 2 AAA domain SbcCD_C PF13558.1 gi|119720395|ref|YP_920890.1| - 0.00025 20.9 0.0 0.34 10.8 0.0 2.7 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|119720395|ref|YP_920890.1| - 0.00039 19.6 0.1 0.25 10.4 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|119720395|ref|YP_920890.1| - 0.00041 20.2 0.7 0.4 10.5 0.1 2.8 2 1 0 2 2 2 1 AAA domain cobW PF02492.14 gi|119720395|ref|YP_920890.1| - 0.00042 19.8 4.7 0.082 12.3 0.3 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|119720395|ref|YP_920890.1| - 0.00045 19.6 1.0 2.1 7.7 0.0 3.2 3 0 0 3 3 3 1 IstB-like ATP binding protein Miro PF08477.8 gi|119720395|ref|YP_920890.1| - 0.0007 20.0 0.8 1 9.8 0.1 2.5 2 0 0 2 2 2 1 Miro-like protein RNA_helicase PF00910.17 gi|119720395|ref|YP_920890.1| - 0.00085 19.4 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 1 RNA helicase PIF1 PF05970.9 gi|119720395|ref|YP_920890.1| - 0.0015 17.5 0.1 1.4 7.7 0.0 2.1 2 0 0 2 2 2 2 PIF1-like helicase ATP_bind_1 PF03029.12 gi|119720395|ref|YP_920890.1| - 0.0015 18.0 0.4 0.91 9.0 0.1 2.5 3 0 0 3 3 2 1 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|119720395|ref|YP_920890.1| - 0.0018 17.8 0.3 1.3 8.4 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family Rad17 PF03215.10 gi|119720395|ref|YP_920890.1| - 0.0023 16.7 0.3 0.37 9.4 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein PduV-EutP PF10662.4 gi|119720395|ref|YP_920890.1| - 0.0025 17.3 0.5 1.2 8.6 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|119720395|ref|YP_920890.1| - 0.0038 16.1 0.6 1.1 8.0 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain DEAD PF00270.24 gi|119720395|ref|YP_920890.1| - 0.0092 15.4 0.0 1.2 8.6 0.0 2.5 3 0 0 3 3 2 1 DEAD/DEAH box helicase Pox_A32 PF04665.7 gi|119720395|ref|YP_920890.1| - 0.0093 15.2 0.2 3.3 6.9 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein MutS_V PF00488.16 gi|119720395|ref|YP_920890.1| - 0.0094 15.3 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 1 MutS domain V SRP54 PF00448.17 gi|119720395|ref|YP_920890.1| - 0.013 14.9 3.3 0.97 8.8 0.1 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|119720395|ref|YP_920890.1| - 0.015 15.0 1.4 2.3 7.9 0.1 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DAP3 PF10236.4 gi|119720395|ref|YP_920890.1| - 0.015 14.2 1.2 3.1 6.6 0.1 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PhoH PF02562.11 gi|119720395|ref|YP_920890.1| - 0.038 13.2 0.8 1.9 7.6 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.7 gi|119720395|ref|YP_920890.1| - 0.039 13.0 0.5 2.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin KaiC PF06745.8 gi|119720395|ref|YP_920890.1| - 0.052 12.6 1.2 3.6 6.6 0.0 2.4 3 0 0 3 3 2 0 KaiC PRK PF00485.13 gi|119720395|ref|YP_920890.1| - 0.059 12.9 0.2 5.8 6.4 0.0 2.4 3 0 0 3 3 2 0 Phosphoribulokinase / Uridine kinase family AAA_24 PF13479.1 gi|119720395|ref|YP_920890.1| - 0.069 12.7 4.3 2.9 7.4 0.5 2.2 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|119720395|ref|YP_920890.1| - 0.074 11.6 3.9 3.8 5.9 0.1 2.9 4 0 0 4 4 3 0 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|119720395|ref|YP_920890.1| - 0.074 11.5 0.5 0.78 8.1 0.2 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|119720395|ref|YP_920890.1| - 0.084 12.8 1.2 11 6.0 0.1 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase KAP_NTPase PF07693.9 gi|119720395|ref|YP_920890.1| - 0.084 11.8 0.1 2.1 7.2 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain Dynamin_N PF00350.18 gi|119720395|ref|YP_920890.1| - 0.084 12.6 1.8 8.5 6.1 0.1 2.4 2 0 0 2 2 2 0 Dynamin family Thymidylate_kin PF02223.12 gi|119720395|ref|YP_920890.1| - 0.09 12.1 0.5 2.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase RuvB_N PF05496.7 gi|119720395|ref|YP_920890.1| - 0.11 11.4 0.5 13 4.6 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus DUF3584 PF12128.3 gi|119720395|ref|YP_920890.1| - 0.12 9.6 1.2 0.33 8.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Adeno_IVa2 PF02456.10 gi|119720395|ref|YP_920890.1| - 0.27 9.8 0.1 3.6 6.1 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein ArgK PF03308.11 gi|119720395|ref|YP_920890.1| - 0.28 9.9 1.9 4.8 5.8 0.1 2.2 2 0 0 2 2 2 0 ArgK protein DUF87 PF01935.12 gi|119720395|ref|YP_920890.1| - 0.4 10.4 7.2 5.7 6.6 0.6 2.6 3 0 0 3 3 2 0 Domain of unknown function DUF87 Viral_helicase1 PF01443.13 gi|119720395|ref|YP_920890.1| - 0.54 9.7 4.1 7.3 6.0 0.5 2.6 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|119720395|ref|YP_920890.1| - 4.7 6.0 4.5 19 4.1 0.4 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) BioY PF02632.9 gi|119720396|ref|YP_920891.1| - 4.3e-25 88.1 17.8 1.5e-24 86.3 12.3 1.8 1 1 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|119720396|ref|YP_920891.1| - 0.0024 17.7 11.1 0.0038 17.1 7.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) MS_channel PF00924.13 gi|119720397|ref|YP_920892.1| - 5.6e-19 68.2 8.0 1.9e-18 66.5 5.4 1.9 1 1 0 1 1 1 1 Mechanosensitive ion channel Gly-zipper_OmpA PF13436.1 gi|119720397|ref|YP_920892.1| - 1.6 8.3 9.7 2.4 7.8 6.7 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF4117 PF13491.1 gi|119720397|ref|YP_920892.1| - 1.6 8.1 15.0 0.19 11.1 7.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) Lactamase_B_3 PF13483.1 gi|119720398|ref|YP_920893.1| - 1.3e-21 76.9 0.0 1.7e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|119720398|ref|YP_920893.1| - 1.9e-19 70.0 0.0 2.3e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|119720398|ref|YP_920893.1| - 2.3e-13 50.2 2.2 5.1e-13 49.1 1.5 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Avirulence PF03377.8 gi|119720398|ref|YP_920893.1| - 0.054 12.2 0.0 0.062 12.0 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Glyco_hydro_3 PF00933.16 gi|119720399|ref|YP_920894.1| - 3.5e-95 318.4 0.0 4.7e-95 317.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|119720399|ref|YP_920894.1| - 3.1e-52 177.3 0.0 5.4e-52 176.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|119720399|ref|YP_920894.1| - 3e-25 87.9 0.1 6.6e-25 86.8 0.1 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain Antitoxin-MazE PF04014.13 gi|119720400|ref|YP_920895.1| - 6.8e-09 35.2 0.6 1.2e-08 34.4 0.4 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|119720400|ref|YP_920895.1| - 0.02 14.6 0.0 0.03 14.0 0.0 1.6 1 1 0 1 1 1 0 MraZ protein DUF2051 PF09738.4 gi|119720400|ref|YP_920895.1| - 2.3 7.4 8.1 2.9 7.1 5.6 1.1 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) FeoA PF04023.9 gi|119720400|ref|YP_920895.1| - 2.3 8.2 5.4 2.8 7.9 0.0 2.6 2 1 1 3 3 3 0 FeoA domain PaREP1 PF05942.6 gi|119720401|ref|YP_920896.1| - 0.0043 16.9 3.5 0.0055 16.5 2.4 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Peptidase_C69 PF03577.10 gi|119720402|ref|YP_920897.1| - 4.4e-15 55.4 0.0 7.6e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family C69 AAT PF03417.11 gi|119720402|ref|YP_920897.1| - 9.3e-05 21.9 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Beta_propel PF09826.4 gi|119720403|ref|YP_920898.1| - 7.6e-143 476.5 0.0 9.1e-143 476.3 0.0 1.1 1 0 0 1 1 1 1 Beta propeller domain PsbN PF02468.10 gi|119720403|ref|YP_920898.1| - 0.021 14.4 0.0 0.045 13.3 0.0 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) LVIVD PF08309.6 gi|119720403|ref|YP_920898.1| - 0.026 13.4 0.9 0.81 8.7 0.0 3.3 3 0 0 3 3 3 0 LVIVD repeat DUF2225 PF09986.4 gi|119720403|ref|YP_920898.1| - 0.096 12.1 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) HTH_5 PF01022.15 gi|119720404|ref|YP_920899.1| - 4.8e-12 45.3 0.1 8.1e-12 44.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|119720404|ref|YP_920899.1| - 1.2e-11 43.8 0.0 2.7e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|119720404|ref|YP_920899.1| - 2.9e-11 42.7 0.7 1.8e-10 40.2 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|119720404|ref|YP_920899.1| - 3.7e-11 42.5 0.0 5.9e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|119720404|ref|YP_920899.1| - 9.4e-10 38.0 0.0 1.8e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|119720404|ref|YP_920899.1| - 2.7e-09 36.6 0.1 4.4e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|119720404|ref|YP_920899.1| - 1.5e-05 24.5 0.0 2.1e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|119720404|ref|YP_920899.1| - 5.6e-05 22.5 0.8 0.00013 21.4 0.0 2.0 3 0 0 3 3 1 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.1 gi|119720404|ref|YP_920899.1| - 5.8e-05 22.5 0.0 0.00011 21.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|119720404|ref|YP_920899.1| - 0.00012 21.9 0.0 0.00024 21.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|119720404|ref|YP_920899.1| - 0.00023 20.6 0.0 0.00046 19.6 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain Sigma70_r4_2 PF08281.7 gi|119720404|ref|YP_920899.1| - 0.00024 20.5 0.0 0.0024 17.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|119720404|ref|YP_920899.1| - 0.00026 20.8 0.0 0.00046 20.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|119720404|ref|YP_920899.1| - 0.00037 20.7 0.0 0.00064 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|119720404|ref|YP_920899.1| - 0.0005 19.8 0.0 0.00077 19.2 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_10 PF04967.7 gi|119720404|ref|YP_920899.1| - 0.00058 19.3 0.0 0.0014 18.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|119720404|ref|YP_920899.1| - 0.00063 19.2 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.1 gi|119720404|ref|YP_920899.1| - 0.00069 19.6 0.0 0.0031 17.6 0.0 2.2 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_30 PF13556.1 gi|119720404|ref|YP_920899.1| - 0.00078 18.9 0.0 0.0023 17.4 0.0 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.1 gi|119720404|ref|YP_920899.1| - 0.0012 18.4 0.0 0.0033 17.0 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain DUF4423 PF14394.1 gi|119720404|ref|YP_920899.1| - 0.0012 18.4 0.0 0.0013 18.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|119720404|ref|YP_920899.1| - 0.0014 18.7 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.7 gi|119720404|ref|YP_920899.1| - 0.0029 17.0 0.0 0.0049 16.3 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|119720404|ref|YP_920899.1| - 0.0041 16.8 0.0 0.0073 16.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|119720404|ref|YP_920899.1| - 0.0045 17.1 0.0 0.012 15.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.7 gi|119720404|ref|YP_920899.1| - 0.0065 16.0 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain TetR_N PF00440.18 gi|119720404|ref|YP_920899.1| - 0.045 13.3 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_40 PF14493.1 gi|119720404|ref|YP_920899.1| - 0.046 13.9 0.0 0.066 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.8 gi|119720404|ref|YP_920899.1| - 0.047 13.1 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain MerR_1 PF13411.1 gi|119720404|ref|YP_920899.1| - 0.048 13.4 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF742 PF05331.6 gi|119720404|ref|YP_920899.1| - 0.052 13.1 0.0 0.096 12.2 0.0 1.4 2 0 0 2 2 1 0 Protein of unknown function (DUF742) HTH_1 PF00126.22 gi|119720404|ref|YP_920899.1| - 0.053 13.2 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.16 gi|119720404|ref|YP_920899.1| - 0.056 12.8 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|119720404|ref|YP_920899.1| - 0.066 13.1 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.11 gi|119720404|ref|YP_920899.1| - 0.069 13.2 0.0 0.096 12.7 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor FeoC PF09012.5 gi|119720404|ref|YP_920899.1| - 0.07 12.8 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 FeoC like transcriptional regulator Terminase_5 PF06056.7 gi|119720404|ref|YP_920899.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_9 PF08221.6 gi|119720404|ref|YP_920899.1| - 0.078 12.8 0.0 0.18 11.6 0.0 1.6 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MerR PF00376.18 gi|119720404|ref|YP_920899.1| - 0.096 12.2 0.0 0.28 10.7 0.0 1.8 1 1 0 1 1 1 0 MerR family regulatory protein HTH_12 PF08461.5 gi|119720404|ref|YP_920899.1| - 0.11 12.2 0.1 0.46 10.2 0.0 2.1 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain GerE PF00196.14 gi|119720404|ref|YP_920899.1| - 0.12 11.6 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PaREP1 PF05942.6 gi|119720406|ref|YP_920901.1| - 2.6e-23 82.0 5.4 4.6e-23 81.2 3.7 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|119720406|ref|YP_920901.1| - 8.2e-05 22.4 2.5 0.00017 21.4 1.7 1.5 1 1 0 1 1 1 1 HEPN domain DUF131 PF01998.12 gi|119720407|ref|YP_920902.1| - 2.5e-16 58.7 3.7 2.5e-16 58.7 2.6 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 MatE PF01554.13 gi|119720407|ref|YP_920902.1| - 0.018 14.6 4.6 0.035 13.7 0.2 2.0 2 0 0 2 2 2 0 MatE Fig1 PF12351.3 gi|119720407|ref|YP_920902.1| - 0.093 12.6 3.4 0.13 12.1 2.4 1.3 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF973 PF06157.6 gi|119720407|ref|YP_920902.1| - 0.66 8.8 6.2 1 8.2 3.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF973) Ninjurin PF04923.7 gi|119720407|ref|YP_920902.1| - 1.1 9.0 4.7 2.6 7.8 3.3 1.6 1 1 0 1 1 1 0 Ninjurin DUF2207 PF09972.4 gi|119720407|ref|YP_920902.1| - 1.4 7.4 4.3 1.5 7.3 3.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ycf9 PF01737.12 gi|119720407|ref|YP_920902.1| - 2.2 7.7 15.1 0.084 12.3 0.8 2.6 2 1 0 2 2 2 0 YCF9 Apq12 PF12716.2 gi|119720407|ref|YP_920902.1| - 3 7.6 9.4 9.4 6.0 0.2 2.3 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis DUF131 PF01998.12 gi|119720408|ref|YP_920903.1| - 1.1e-09 37.5 6.6 1.1e-09 37.5 4.6 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF4117 PF13491.1 gi|119720408|ref|YP_920903.1| - 0.1 12.0 10.5 0.13 11.6 7.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) GHMP_kinases_N PF00288.21 gi|119720408|ref|YP_920903.1| - 2.5 8.2 12.2 0.12 12.4 3.4 2.2 2 1 0 2 2 2 0 GHMP kinases N terminal domain Lipase3_N PF03893.11 gi|119720408|ref|YP_920903.1| - 3.9 7.3 6.4 5.1 6.9 1.0 2.2 2 0 0 2 2 2 0 Lipase 3 N-terminal region DUF3955 PF13127.1 gi|119720408|ref|YP_920903.1| - 9.3 5.8 12.1 0.12 11.9 0.9 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3955) Bac_Ubq_Cox PF01654.12 gi|119720410|ref|YP_920905.1| - 1.3e-18 66.6 26.3 1.2e-17 63.4 13.6 2.0 1 1 0 2 2 2 2 Bacterial Cytochrome Ubiquinol Oxidase P12 PF12669.2 gi|119720410|ref|YP_920905.1| - 3.3 7.9 4.0 11 6.2 0.1 3.0 2 0 0 2 2 2 0 Virus attachment protein p12 family Bac_Ubq_Cox PF01654.12 gi|119720411|ref|YP_920906.1| - 1.1e-63 215.2 29.4 5.6e-63 212.8 20.4 2.0 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase F_bP_aldolase PF01116.15 gi|119720412|ref|YP_920907.1| - 0.062 12.3 0.0 2.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-II HycI PF01750.13 gi|119720413|ref|YP_920908.1| - 3.7e-09 36.2 0.0 5.3e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease HTH_24 PF13412.1 gi|119720414|ref|YP_920909.1| - 2.1e-10 39.8 0.0 3.5e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|119720414|ref|YP_920909.1| - 1.4e-06 27.8 0.0 3.6e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|119720414|ref|YP_920909.1| - 2e-06 27.4 0.3 6.1e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|119720414|ref|YP_920909.1| - 2.5e-05 23.8 0.7 7.5e-05 22.3 0.1 2.1 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|119720414|ref|YP_920909.1| - 2.5e-05 24.1 0.0 9.4e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|119720414|ref|YP_920909.1| - 6.9e-05 22.3 0.0 0.00018 21.0 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|119720414|ref|YP_920909.1| - 0.0015 17.9 0.0 0.0036 16.7 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain FaeA PF04703.7 gi|119720414|ref|YP_920909.1| - 0.0019 18.3 0.2 0.0061 16.6 0.1 1.8 2 0 0 2 2 2 1 FaeA-like protein MarR_2 PF12802.2 gi|119720414|ref|YP_920909.1| - 0.0024 17.4 0.0 0.0055 16.3 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|119720414|ref|YP_920909.1| - 0.0025 17.6 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|119720414|ref|YP_920909.1| - 0.0039 16.7 0.0 0.0064 16.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|119720414|ref|YP_920909.1| - 0.005 16.4 0.2 0.024 14.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain FeoC PF09012.5 gi|119720414|ref|YP_920909.1| - 0.047 13.3 0.0 0.091 12.4 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator EAP30 PF04157.11 gi|119720414|ref|YP_920909.1| - 0.15 11.1 0.0 0.31 10.1 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family 7TMR-DISM_7TM PF07695.6 gi|119720415|ref|YP_920910.1| - 0.018 14.6 13.1 0.022 14.4 9.0 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling Ni_hydr_CYTB PF01292.15 gi|119720415|ref|YP_920910.1| - 1.4 8.2 7.5 2.6 7.4 5.0 1.6 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 VIT1 PF01988.14 gi|119720415|ref|YP_920910.1| - 1.6 8.1 8.1 2.1 7.7 5.6 1.2 1 0 0 1 1 1 0 VIT family Glyco_hydro_4 PF02056.11 gi|119720416|ref|YP_920911.1| - 2.8e-45 153.8 0.0 3.9e-45 153.4 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|119720416|ref|YP_920911.1| - 2.5e-32 112.5 0.0 4.3e-32 111.7 0.0 1.4 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.18 gi|119720416|ref|YP_920911.1| - 0.0013 18.5 0.0 0.029 14.1 0.0 2.2 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain OTCace PF00185.19 gi|119720416|ref|YP_920911.1| - 0.064 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AlaDh_PNT_C PF01262.16 gi|119720416|ref|YP_920911.1| - 0.097 12.2 0.0 0.24 10.9 0.0 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AA_permease_2 PF13520.1 gi|119720418|ref|YP_920913.1| - 3.1e-48 164.3 30.9 3.9e-48 164.0 21.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|119720418|ref|YP_920913.1| - 2.4e-44 151.4 32.1 4e-44 150.7 22.2 1.3 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|119720418|ref|YP_920913.1| - 3.6e-14 52.1 2.9 3.6e-14 52.1 2.0 1.5 1 1 0 1 1 1 1 Spore germination protein DUF996 PF06195.8 gi|119720419|ref|YP_920914.1| - 0.0058 16.6 6.0 0.0058 16.6 4.2 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF996) Yip1 PF04893.12 gi|119720419|ref|YP_920914.1| - 0.31 10.5 36.6 1.3 8.5 16.0 2.1 1 1 1 2 2 2 0 Yip1 domain DDE_Tnp_1_6 PF13751.1 gi|119720420|ref|YP_920915.1| - 0.12 12.4 0.5 0.15 12.0 0.4 1.2 1 0 0 1 1 1 0 Transposase DDE domain ADH_N PF08240.7 gi|119720421|ref|YP_920916.1| - 3e-27 94.5 0.0 5e-27 93.8 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|119720421|ref|YP_920916.1| - 5.6e-15 55.0 0.1 1e-14 54.1 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|119720421|ref|YP_920916.1| - 8.5e-09 36.3 0.3 4.3e-08 34.1 0.0 2.0 1 1 0 2 2 2 1 Zinc-binding dehydrogenase Pyr_redox PF00070.22 gi|119720421|ref|YP_920916.1| - 0.054 13.8 0.8 0.16 12.3 0.5 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|119720421|ref|YP_920916.1| - 0.067 13.6 0.1 0.21 12.0 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|119720421|ref|YP_920916.1| - 0.083 13.1 0.1 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Oxidored_nitro PF00148.14 gi|119720421|ref|YP_920916.1| - 0.12 10.9 0.0 0.24 10.0 0.0 1.5 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Shikimate_DH PF01488.15 gi|119720421|ref|YP_920916.1| - 0.15 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Prefoldin_3 PF13758.1 gi|119720422|ref|YP_920917.1| - 3.2e-05 23.6 2.7 4.4e-05 23.1 1.9 1.3 1 1 0 1 1 1 1 Prefoldin subunit Sugarporin_N PF11471.3 gi|119720422|ref|YP_920917.1| - 0.0002 20.9 5.5 0.59 9.8 1.7 3.7 2 1 0 2 2 2 1 Maltoporin periplasmic N-terminal extension Osmo_CC PF08946.5 gi|119720422|ref|YP_920917.1| - 0.0002 21.2 0.2 1.2 9.2 0.0 2.7 1 1 1 2 2 2 2 Osmosensory transporter coiled coil Tropomyosin_1 PF12718.2 gi|119720422|ref|YP_920917.1| - 0.00027 20.8 0.8 0.00032 20.5 0.0 1.5 2 0 0 2 2 1 1 Tropomyosin like Vac_Fusion PF02346.11 gi|119720422|ref|YP_920917.1| - 0.0036 16.6 2.0 0.032 13.6 0.4 2.6 2 1 1 3 3 3 2 Chordopoxvirus fusion protein BLOC1_2 PF10046.4 gi|119720422|ref|YP_920917.1| - 0.005 16.9 0.3 0.021 14.9 0.2 1.9 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.4 gi|119720422|ref|YP_920917.1| - 0.0058 16.5 0.9 0.02 14.7 0.3 2.0 1 1 1 2 2 2 1 Haemolysin XhlA Fib_alpha PF08702.5 gi|119720422|ref|YP_920917.1| - 0.0096 16.0 0.8 0.014 15.5 0.6 1.5 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family Tropomyosin PF00261.15 gi|119720422|ref|YP_920917.1| - 0.01 14.9 1.5 0.01 14.9 1.0 1.6 1 1 0 1 1 1 0 Tropomyosin Nsp1_C PF05064.8 gi|119720422|ref|YP_920917.1| - 0.014 15.0 0.2 0.026 14.1 0.2 1.4 1 0 0 1 1 1 0 Nsp1-like C-terminal region AAA_13 PF13166.1 gi|119720422|ref|YP_920917.1| - 0.018 13.5 0.0 0.024 13.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain MRF_C1 PF13887.1 gi|119720422|ref|YP_920917.1| - 0.021 13.8 1.4 16 4.6 0.5 3.8 2 1 1 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 Spc7 PF08317.6 gi|119720422|ref|YP_920917.1| - 0.022 13.4 1.1 0.027 13.1 0.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Matrilin_ccoil PF10393.4 gi|119720422|ref|YP_920917.1| - 0.023 14.0 1.8 0.36 10.2 0.4 2.5 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin HSBP1 PF06825.7 gi|119720422|ref|YP_920917.1| - 0.024 14.1 2.2 0.68 9.5 0.4 2.6 2 1 0 2 2 1 0 Heat shock factor binding protein 1 DASH_Spc34 PF08657.5 gi|119720422|ref|YP_920917.1| - 0.033 13.8 0.5 0.037 13.7 0.4 1.3 1 1 0 1 1 1 0 DASH complex subunit Spc34 FliD_C PF07195.7 gi|119720422|ref|YP_920917.1| - 0.037 13.3 0.0 0.044 13.0 0.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.3 gi|119720422|ref|YP_920917.1| - 0.046 13.5 0.5 0.046 13.5 0.3 2.4 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding CENP-F_leu_zip PF10473.4 gi|119720422|ref|YP_920917.1| - 0.05 13.4 0.2 0.05 13.4 0.2 1.7 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.3 gi|119720422|ref|YP_920917.1| - 0.054 13.3 0.6 0.054 13.3 0.4 1.7 2 1 0 2 2 1 0 Afadin- and alpha -actinin-Binding DUF3552 PF12072.3 gi|119720422|ref|YP_920917.1| - 0.056 12.6 3.0 0.057 12.6 1.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) MscS_porin PF12795.2 gi|119720422|ref|YP_920917.1| - 0.062 12.6 0.8 0.1 11.9 0.6 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain DUF2360 PF10152.4 gi|119720422|ref|YP_920917.1| - 0.064 13.5 0.3 0.11 12.7 0.3 1.4 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Baculo_PEP_C PF04513.7 gi|119720422|ref|YP_920917.1| - 0.066 13.0 0.0 0.094 12.5 0.0 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus V_ATPase_I PF01496.14 gi|119720422|ref|YP_920917.1| - 0.067 11.0 0.1 0.065 11.0 0.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Ax_dynein_light PF10211.4 gi|119720422|ref|YP_920917.1| - 0.068 13.0 0.2 0.068 13.0 0.1 1.7 2 0 0 2 2 2 0 Axonemal dynein light chain SlyX PF04102.7 gi|119720422|ref|YP_920917.1| - 0.071 13.4 2.3 0.13 12.7 0.3 2.2 2 0 0 2 2 2 0 SlyX NPV_P10 PF05531.7 gi|119720422|ref|YP_920917.1| - 0.081 13.1 0.1 0.17 12.1 0.1 1.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Syntaxin_2 PF14523.1 gi|119720422|ref|YP_920917.1| - 0.088 12.8 0.5 0.2 11.7 0.2 1.8 1 1 0 1 1 1 0 Syntaxin-like protein MCM PF00493.18 gi|119720422|ref|YP_920917.1| - 0.1 11.4 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 MCM2/3/5 family CALCOCO1 PF07888.6 gi|119720422|ref|YP_920917.1| - 0.14 10.4 3.5 0.16 10.1 2.4 1.0 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Dynamitin PF04912.9 gi|119720422|ref|YP_920917.1| - 0.15 10.8 1.2 10 4.8 0.2 2.0 1 1 1 2 2 2 0 Dynamitin FlaC_arch PF05377.6 gi|119720422|ref|YP_920917.1| - 0.15 11.9 0.2 0.15 11.9 0.1 2.3 3 0 0 3 3 1 0 Flagella accessory protein C (FlaC) ATG16 PF08614.6 gi|119720422|ref|YP_920917.1| - 0.23 11.2 3.1 0.18 11.5 0.9 1.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) PspB PF06667.7 gi|119720422|ref|YP_920917.1| - 0.24 11.3 2.1 1.8 8.5 0.5 2.7 1 1 1 2 2 2 0 Phage shock protein B HR1 PF02185.11 gi|119720422|ref|YP_920917.1| - 0.25 11.0 7.4 0.089 12.5 1.3 2.8 2 1 1 3 3 3 0 Hr1 repeat Phasin PF05597.6 gi|119720422|ref|YP_920917.1| - 0.26 11.0 1.9 0.4 10.4 1.3 1.5 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Prefoldin_2 PF01920.15 gi|119720422|ref|YP_920917.1| - 0.32 10.7 3.4 0.15 11.8 0.3 2.0 2 1 0 2 2 1 0 Prefoldin subunit MerR-DNA-bind PF09278.6 gi|119720422|ref|YP_920917.1| - 0.6 10.5 10.8 0.9 9.9 0.2 3.5 1 1 2 3 3 3 0 MerR, DNA binding DivIC PF04977.10 gi|119720422|ref|YP_920917.1| - 0.76 9.3 6.9 0.099 12.1 1.1 2.3 3 1 0 3 3 2 0 Septum formation initiator Nup54 PF13874.1 gi|119720422|ref|YP_920917.1| - 0.81 9.3 4.5 0.45 10.1 0.9 2.1 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 DUF4140 PF13600.1 gi|119720422|ref|YP_920917.1| - 0.97 9.9 6.1 0.096 13.1 0.8 2.0 2 1 0 2 2 1 0 N-terminal domain of unknown function (DUF4140) Med9 PF07544.8 gi|119720422|ref|YP_920917.1| - 1.8 8.3 6.9 4.2 7.1 0.9 2.7 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Cortex-I_coil PF09304.5 gi|119720422|ref|YP_920917.1| - 1.9 8.5 5.6 0.55 10.2 1.5 1.8 1 1 0 1 1 1 0 Cortexillin I, coiled coil DUF3782 PF12644.2 gi|119720422|ref|YP_920917.1| - 2 8.2 9.3 73 3.2 6.4 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) DHHA1 PF02272.14 gi|119720423|ref|YP_920918.1| - 2.5e-13 49.4 1.8 4e-13 48.8 0.5 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|119720423|ref|YP_920918.1| - 1.7e-07 30.9 0.0 3.6e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 DHH family Nitro_FeMo-Co PF02579.12 gi|119720423|ref|YP_920918.1| - 0.035 14.1 0.4 0.23 11.5 0.1 2.3 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|119720424|ref|YP_920919.1| - 9e-16 57.7 0.2 1e-15 57.5 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Peripla_BP_2 PF01497.13 gi|119720424|ref|YP_920919.1| - 0.1 11.7 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein 4HBT PF03061.17 gi|119720425|ref|YP_920920.1| - 9.1e-10 38.5 0.1 2.7e-09 37.0 0.0 1.7 2 0 0 2 2 2 1 Thioesterase superfamily Abi PF02517.11 gi|119720426|ref|YP_920921.1| - 9.7e-10 38.4 6.2 9.7e-10 38.4 4.3 2.4 1 1 0 2 2 2 1 CAAX protease self-immunity MotA_ExbB PF01618.11 gi|119720426|ref|YP_920921.1| - 7.6 6.1 8.3 17 5.0 1.7 2.3 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family DUF3267 PF11667.3 gi|119720427|ref|YP_920922.1| - 2e-21 76.2 0.1 4.2e-21 75.2 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3267) DUF2341 PF10102.4 gi|119720430|ref|YP_920925.1| - 2e-25 88.7 0.2 2.1e-24 85.4 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) DUF1080 PF06439.6 gi|119720430|ref|YP_920925.1| - 0.00054 19.8 0.1 0.0026 17.6 0.1 2.2 1 1 0 1 1 1 1 Domain of Unknown Function (DUF1080) Trypsin_2 PF13365.1 gi|119720432|ref|YP_920927.1| - 5.1e-23 81.3 0.6 8.7e-23 80.5 0.4 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|119720432|ref|YP_920927.1| - 5e-14 52.4 0.0 8.2e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|119720432|ref|YP_920927.1| - 4.5e-13 48.8 0.0 1e-12 47.7 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|119720432|ref|YP_920927.1| - 1.1e-05 25.5 0.0 2.5e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|119720432|ref|YP_920927.1| - 5e-05 21.9 0.5 0.017 13.5 0.0 2.1 2 0 0 2 2 2 2 Peptidase S46 MFS_1 PF07690.11 gi|119720433|ref|YP_920928.1| - 4.9e-26 91.2 46.1 2.6e-18 65.8 14.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|119720433|ref|YP_920928.1| - 0.00011 21.9 0.2 0.0025 17.5 0.0 2.7 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.19 gi|119720433|ref|YP_920928.1| - 0.09 11.3 12.9 0.0045 15.6 2.7 2.8 1 1 1 2 2 2 0 Sugar (and other) transporter TraT PF05818.7 gi|119720433|ref|YP_920928.1| - 1.2 8.5 4.9 4.9 6.5 0.8 2.3 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein Gly-zipper_YMGG PF13441.1 gi|119720433|ref|YP_920928.1| - 4.5 6.8 13.2 3.2 7.3 0.7 3.3 3 1 0 3 3 3 0 YMGG-like Gly-zipper ABC_tran PF00005.22 gi|119720434|ref|YP_920929.1| - 4.3e-16 59.4 0.0 6.2e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720434|ref|YP_920929.1| - 4e-10 40.1 0.0 7e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119720434|ref|YP_920929.1| - 0.0005 19.3 0.0 0.16 11.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|119720434|ref|YP_920929.1| - 0.0065 15.9 0.1 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|119720434|ref|YP_920929.1| - 0.01 15.2 0.6 0.042 13.2 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|119720434|ref|YP_920929.1| - 0.054 13.8 0.0 0.074 13.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119720434|ref|YP_920929.1| - 0.058 13.2 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|119720434|ref|YP_920929.1| - 0.097 11.2 0.2 0.14 10.7 0.1 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_28 PF13521.1 gi|119720434|ref|YP_920929.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.12 gi|119720435|ref|YP_920930.1| - 7.7e-41 140.0 0.0 9.7e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UBA PF00627.26 gi|119720435|ref|YP_920930.1| - 0.099 12.5 1.0 0.21 11.4 0.0 2.1 3 0 0 3 3 3 0 UBA/TS-N domain PEPCK PF00821.13 gi|119720436|ref|YP_920931.1| - 5.9e-187 622.4 0.0 6.9e-187 622.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase CitMHS PF03600.11 gi|119720437|ref|YP_920932.1| - 8.4e-29 100.2 41.6 4.2e-22 78.1 16.5 2.1 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|119720437|ref|YP_920932.1| - 6.1e-05 22.0 22.5 0.00072 18.5 6.4 2.3 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region DUF2619 PF10942.3 gi|119720437|ref|YP_920932.1| - 0.39 10.6 7.5 4.8 7.1 0.2 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2619) ECF-ribofla_trS PF07155.7 gi|119720438|ref|YP_920933.1| - 1.1e-32 113.1 14.4 1.2e-32 112.9 10.0 1.0 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|119720438|ref|YP_920933.1| - 4.9e-07 29.8 13.6 7e-07 29.3 9.4 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) ATP1G1_PLM_MAT8 PF02038.11 gi|119720438|ref|YP_920933.1| - 0.13 11.2 0.1 0.29 10.1 0.0 1.6 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family SNARE_assoc PF09335.6 gi|119720438|ref|YP_920933.1| - 0.6 10.3 11.5 9.5 6.4 7.5 2.6 1 1 0 1 1 1 0 SNARE associated Golgi protein Trep_Strep PF09605.5 gi|119720438|ref|YP_920933.1| - 3.9 7.1 10.5 20 4.8 6.2 2.5 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) CbiQ PF02361.11 gi|119720439|ref|YP_920934.1| - 6.3e-23 81.5 5.3 6.3e-23 81.5 3.7 1.4 2 0 0 2 2 2 1 Cobalt transport protein DUF454 PF04304.8 gi|119720439|ref|YP_920934.1| - 0.31 11.0 0.1 0.31 11.0 0.1 4.2 2 1 1 4 4 4 0 Protein of unknown function (DUF454) DUF3112 PF11309.3 gi|119720439|ref|YP_920934.1| - 1.1 9.0 8.3 1.1 9.0 3.8 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3112) DUF3671 PF12420.3 gi|119720439|ref|YP_920934.1| - 3.6 7.6 9.1 16 5.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF554 PF04474.7 gi|119720440|ref|YP_920935.1| - 5.3e-66 222.0 23.2 6.5e-66 221.7 16.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF554) DUF204 PF02659.10 gi|119720440|ref|YP_920935.1| - 6.7 6.9 15.4 5.1 7.2 5.1 3.5 2 1 0 3 3 3 0 Domain of unknown function DUF PALP PF00291.20 gi|119720441|ref|YP_920936.1| - 2.7e-54 184.4 1.5 3.2e-54 184.2 1.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1611 PF07755.6 gi|119720442|ref|YP_920937.1| - 1.2e-99 332.8 0.0 1.4e-99 332.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) CoA_binding_2 PF13380.1 gi|119720442|ref|YP_920937.1| - 0.0005 20.2 0.1 0.21 11.7 0.0 2.6 2 1 0 2 2 2 2 CoA binding domain CoA_binding PF02629.14 gi|119720442|ref|YP_920937.1| - 0.00086 19.7 0.1 0.012 16.1 0.0 2.4 2 0 0 2 2 2 1 CoA binding domain DapB_N PF01113.15 gi|119720442|ref|YP_920937.1| - 0.0025 17.7 0.1 0.024 14.5 0.0 2.5 2 2 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus DUF498 PF04430.9 gi|119720442|ref|YP_920937.1| - 0.027 14.0 0.1 2.9 7.4 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF498/DUF598) AAA_26 PF13500.1 gi|119720442|ref|YP_920937.1| - 0.12 11.9 0.2 1.3 8.5 0.1 2.3 1 1 1 2 2 2 0 AAA domain PRK PF00485.13 gi|119720442|ref|YP_920937.1| - 0.14 11.6 0.3 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF457 PF04307.9 gi|119720444|ref|YP_920939.1| - 1.9e-06 27.3 5.9 2.5e-06 26.8 4.1 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ABC_tran PF00005.22 gi|119720445|ref|YP_920940.1| - 1.4e-57 193.8 0.0 5.2e-28 98.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|119720445|ref|YP_920940.1| - 1.5e-16 61.2 0.2 0.0037 17.2 0.0 4.1 4 0 0 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|119720445|ref|YP_920940.1| - 5.8e-12 44.9 0.5 2.8e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119720445|ref|YP_920940.1| - 3.7e-10 39.4 0.5 1.3e-06 27.7 0.2 3.5 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|119720445|ref|YP_920940.1| - 2.4e-07 30.9 0.0 0.0005 20.0 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|119720445|ref|YP_920940.1| - 5.6e-07 28.8 0.0 0.0089 15.2 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|119720445|ref|YP_920940.1| - 7.6e-07 29.6 0.0 0.0034 17.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|119720445|ref|YP_920940.1| - 9e-07 28.2 0.0 0.76 8.7 0.0 4.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_30 PF13604.1 gi|119720445|ref|YP_920940.1| - 6.7e-06 25.8 0.1 0.0062 16.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|119720445|ref|YP_920940.1| - 7.2e-06 25.6 1.1 0.35 10.2 0.0 3.2 3 0 0 3 3 3 2 AAA-like domain AAA_25 PF13481.1 gi|119720445|ref|YP_920940.1| - 1.2e-05 24.8 0.2 0.0089 15.4 0.0 2.8 3 0 0 3 3 3 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|119720445|ref|YP_920940.1| - 1.2e-05 24.9 0.0 0.0091 15.4 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|119720445|ref|YP_920940.1| - 1.5e-05 24.2 0.2 0.027 13.5 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin SbcCD_C PF13558.1 gi|119720445|ref|YP_920940.1| - 1.8e-05 24.5 0.1 0.1 12.5 0.0 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|119720445|ref|YP_920940.1| - 4e-05 22.8 0.2 0.17 11.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|119720445|ref|YP_920940.1| - 5.1e-05 24.0 1.2 0.041 14.7 0.4 3.0 2 1 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|119720445|ref|YP_920940.1| - 6.2e-05 22.6 0.7 0.034 13.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 DUF815 PF05673.8 gi|119720445|ref|YP_920940.1| - 6.5e-05 21.9 0.1 0.0075 15.2 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) T2SE PF00437.15 gi|119720445|ref|YP_920940.1| - 7.6e-05 21.7 0.0 0.026 13.4 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|119720445|ref|YP_920940.1| - 0.00013 21.6 0.5 0.2 11.4 0.1 2.9 3 0 0 3 3 2 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|119720445|ref|YP_920940.1| - 0.00015 21.6 0.1 0.086 12.7 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase NACHT PF05729.7 gi|119720445|ref|YP_920940.1| - 0.00021 20.9 0.5 0.076 12.6 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|119720445|ref|YP_920940.1| - 0.00023 20.8 1.1 0.55 9.9 0.1 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) G-alpha PF00503.15 gi|119720445|ref|YP_920940.1| - 0.00032 19.5 0.0 0.095 11.3 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit AAA_22 PF13401.1 gi|119720445|ref|YP_920940.1| - 0.00046 20.3 0.1 0.28 11.3 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|119720445|ref|YP_920940.1| - 0.00052 19.8 0.7 0.3 10.9 0.0 3.0 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.17 gi|119720445|ref|YP_920940.1| - 0.0015 17.4 0.2 0.055 12.3 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.9 gi|119720445|ref|YP_920940.1| - 0.0025 17.5 0.7 1.3 8.6 0.0 2.8 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|119720445|ref|YP_920940.1| - 0.0034 17.8 0.3 4.4 7.8 0.1 2.5 2 0 0 2 2 2 0 Miro-like protein IstB_IS21 PF01695.12 gi|119720445|ref|YP_920940.1| - 0.0045 16.4 0.1 14 5.0 0.0 3.3 3 0 0 3 3 3 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|119720445|ref|YP_920940.1| - 0.0045 16.8 0.6 0.49 10.1 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 RNA_helicase PF00910.17 gi|119720445|ref|YP_920940.1| - 0.0048 17.0 0.1 4.1 7.6 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_18 PF13238.1 gi|119720445|ref|YP_920940.1| - 0.0052 17.0 4.3 0.44 10.8 1.2 3.3 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|119720445|ref|YP_920940.1| - 0.008 15.6 1.8 3.4 7.0 0.0 3.6 4 0 0 4 4 4 0 SRP54-type protein, GTPase domain Gtr1_RagA PF04670.7 gi|119720445|ref|YP_920940.1| - 0.0085 15.2 0.2 1.6 7.7 0.0 2.4 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region NTPase_1 PF03266.10 gi|119720445|ref|YP_920940.1| - 0.0085 15.8 2.5 0.42 10.3 0.1 2.9 3 0 0 3 3 2 1 NTPase CPT PF07931.7 gi|119720445|ref|YP_920940.1| - 0.01 15.5 0.1 0.32 10.6 0.1 2.6 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein Sigma54_activat PF00158.21 gi|119720445|ref|YP_920940.1| - 0.011 15.1 0.2 4.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA PF00004.24 gi|119720445|ref|YP_920940.1| - 0.012 15.8 1.6 4.4 7.5 0.0 3.3 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.4 gi|119720445|ref|YP_920940.1| - 0.012 15.1 0.1 0.56 9.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MCM PF00493.18 gi|119720445|ref|YP_920940.1| - 0.021 13.6 0.1 0.15 10.8 0.0 2.0 2 0 0 2 2 2 0 MCM2/3/5 family APS_kinase PF01583.15 gi|119720445|ref|YP_920940.1| - 0.025 14.2 0.3 1.2 8.7 0.0 2.6 2 0 0 2 2 2 0 Adenylylsulphate kinase Arch_ATPase PF01637.13 gi|119720445|ref|YP_920940.1| - 0.026 14.2 0.1 0.44 10.2 0.0 2.7 3 0 0 3 3 3 0 Archaeal ATPase KaiC PF06745.8 gi|119720445|ref|YP_920940.1| - 0.035 13.2 1.1 4.8 6.2 0.0 2.6 3 0 0 3 3 3 0 KaiC ABC_ATPase PF09818.4 gi|119720445|ref|YP_920940.1| - 0.038 12.5 0.2 0.17 10.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ArgK PF03308.11 gi|119720445|ref|YP_920940.1| - 0.043 12.5 1.2 3.5 6.3 0.0 2.5 3 0 0 3 3 3 0 ArgK protein AAA_13 PF13166.1 gi|119720445|ref|YP_920940.1| - 0.065 11.6 1.0 3.7 5.8 0.0 3.4 4 0 0 4 4 4 0 AAA domain PIF1 PF05970.9 gi|119720445|ref|YP_920940.1| - 0.072 12.0 0.0 1.8 7.4 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase Sigma54_activ_2 PF14532.1 gi|119720445|ref|YP_920940.1| - 0.13 12.2 0.1 8.6 6.4 0.0 2.6 3 0 0 3 3 2 0 Sigma-54 interaction domain Dynamin_N PF00350.18 gi|119720445|ref|YP_920940.1| - 0.16 11.7 0.8 16 5.3 0.0 2.4 2 0 0 2 2 2 0 Dynamin family AAA_24 PF13479.1 gi|119720445|ref|YP_920940.1| - 0.21 11.1 2.0 15 5.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|119720445|ref|YP_920940.1| - 1.4 8.8 4.3 31 4.4 0.0 3.4 4 0 0 4 4 3 0 AAA domain Snapin_Pallidin PF14712.1 gi|119720446|ref|YP_920941.1| - 8.1e-07 29.2 3.3 2.8 8.3 0.0 4.7 1 1 3 4 4 4 1 Snapin/Pallidin DUF972 PF06156.8 gi|119720446|ref|YP_920941.1| - 9.8e-06 25.8 12.4 0.011 16.0 0.2 3.7 2 1 2 4 4 3 2 Protein of unknown function (DUF972) APG6 PF04111.7 gi|119720446|ref|YP_920941.1| - 3.6e-05 22.9 22.5 0.0017 17.4 2.7 2.7 2 1 1 3 3 3 2 Autophagy protein Apg6 DUF2353 PF09789.4 gi|119720446|ref|YP_920941.1| - 0.00031 20.1 11.0 0.0092 15.2 7.3 2.5 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) CCDC155 PF14662.1 gi|119720446|ref|YP_920941.1| - 0.00048 19.7 21.5 0.0036 16.9 9.5 3.2 2 1 1 3 3 3 2 Coiled-coil region of CCDC155 Latarcin PF10279.4 gi|119720446|ref|YP_920941.1| - 0.001 19.1 26.7 0.75 10.0 4.5 4.7 2 1 2 4 4 4 1 Latarcin precursor SmpB PF01668.13 gi|119720446|ref|YP_920941.1| - 0.0011 18.6 11.0 9 6.1 0.0 7.1 3 1 5 8 8 8 0 SmpB protein DUF1664 PF07889.7 gi|119720446|ref|YP_920941.1| - 0.0038 17.0 0.8 0.57 9.9 0.6 2.8 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) CALCOCO1 PF07888.6 gi|119720446|ref|YP_920941.1| - 0.0075 14.6 10.9 0.014 13.7 7.6 1.4 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like PTRF_SDPR PF15237.1 gi|119720446|ref|YP_920941.1| - 0.014 14.8 3.1 0.014 14.8 2.2 2.1 1 1 2 3 3 3 0 PTRF/SDPR family V_ATPase_I PF01496.14 gi|119720446|ref|YP_920941.1| - 0.021 12.7 7.1 0.036 11.9 4.9 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF342 PF03961.8 gi|119720446|ref|YP_920941.1| - 0.028 12.8 5.4 0.14 10.5 3.9 1.9 1 1 2 3 3 3 0 Protein of unknown function (DUF342) DUF2935 PF11155.3 gi|119720446|ref|YP_920941.1| - 0.032 14.3 0.8 0.33 11.0 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF2935) Seryl_tRNA_N PF02403.17 gi|119720446|ref|YP_920941.1| - 0.033 14.1 17.0 0.064 13.2 7.7 3.1 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|119720446|ref|YP_920941.1| - 0.035 12.7 10.5 0.012 14.3 5.3 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein EzrA PF06160.7 gi|119720446|ref|YP_920941.1| - 0.036 12.2 10.8 0.7 8.0 0.7 3.1 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA TMF_DNA_bd PF12329.3 gi|119720446|ref|YP_920941.1| - 0.052 13.3 22.4 1.5 8.6 5.0 3.9 2 1 3 5 5 4 0 TATA element modulatory factor 1 DNA binding TBPIP PF07106.8 gi|119720446|ref|YP_920941.1| - 0.056 12.9 9.1 0.18 11.3 5.2 2.3 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HALZ PF02183.13 gi|119720446|ref|YP_920941.1| - 0.063 12.9 12.8 13 5.5 0.7 5.1 2 1 5 7 7 7 0 Homeobox associated leucine zipper Mod_r PF07200.8 gi|119720446|ref|YP_920941.1| - 0.07 13.0 17.5 0.46 10.3 3.8 3.2 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein zf-C4H2 PF10146.4 gi|119720446|ref|YP_920941.1| - 0.073 13.0 10.7 0.35 10.8 2.3 2.5 2 1 1 3 3 2 0 Zinc finger-containing protein ADIP PF11559.3 gi|119720446|ref|YP_920941.1| - 0.081 12.8 15.0 0.19 11.5 0.6 2.6 2 1 1 3 3 2 0 Afadin- and alpha -actinin-Binding ATP-synt_10 PF05176.9 gi|119720446|ref|YP_920941.1| - 0.099 11.8 1.7 1.7 7.8 0.0 2.3 1 1 1 2 2 2 0 ATP10 protein DUF2205 PF10224.4 gi|119720446|ref|YP_920941.1| - 0.14 11.7 22.4 0.17 11.4 1.8 4.6 2 1 3 5 5 5 0 Predicted coiled-coil protein (DUF2205) DivIC PF04977.10 gi|119720446|ref|YP_920941.1| - 0.16 11.4 20.8 1.3 8.5 2.7 4.2 1 1 4 5 5 5 0 Septum formation initiator FUSC PF04632.7 gi|119720446|ref|YP_920941.1| - 0.16 10.3 9.4 0.54 8.6 5.7 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF4407 PF14362.1 gi|119720446|ref|YP_920941.1| - 0.18 10.7 4.5 0.32 9.9 3.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CENP-F_leu_zip PF10473.4 gi|119720446|ref|YP_920941.1| - 0.21 11.4 25.9 0.042 13.7 5.2 3.4 2 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TelA PF05816.6 gi|119720446|ref|YP_920941.1| - 0.22 10.1 4.5 3.2 6.3 0.3 2.7 1 1 2 3 3 3 0 Toxic anion resistance protein (TelA) Transposase_22 PF02994.9 gi|119720446|ref|YP_920941.1| - 0.28 9.6 17.1 0.34 9.3 3.5 2.7 2 1 1 3 3 3 0 L1 transposable element Dor1 PF04124.7 gi|119720446|ref|YP_920941.1| - 0.28 9.5 2.8 0.88 7.9 1.4 2.0 1 1 0 1 1 1 0 Dor1-like family RmuC PF02646.11 gi|119720446|ref|YP_920941.1| - 0.45 9.2 8.4 0.84 8.4 0.8 2.8 2 1 1 3 3 3 0 RmuC family Nup88 PF10168.4 gi|119720446|ref|YP_920941.1| - 0.5 8.1 12.6 7.2 4.3 8.9 2.1 1 1 0 1 1 1 0 Nuclear pore component ALIX_LYPXL_bnd PF13949.1 gi|119720446|ref|YP_920941.1| - 0.67 8.8 14.8 8.4 5.2 9.5 2.7 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV GAS PF13851.1 gi|119720446|ref|YP_920941.1| - 0.7 9.0 13.4 3.7 6.6 9.3 2.1 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF2968 PF11180.3 gi|119720446|ref|YP_920941.1| - 0.75 9.1 12.9 1.7 7.9 1.3 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF2968) ORF6C PF10552.4 gi|119720446|ref|YP_920941.1| - 0.76 9.5 4.9 10 5.8 0.1 3.4 1 1 3 4 4 4 0 ORF6C domain Laminin_I PF06008.9 gi|119720446|ref|YP_920941.1| - 1.2 8.3 13.4 2.2 7.5 5.7 2.8 2 1 0 2 2 2 0 Laminin Domain I CASP_C PF08172.7 gi|119720446|ref|YP_920941.1| - 1.3 8.0 9.7 4.8 6.1 1.2 2.8 2 1 1 3 3 3 0 CASP C terminal WEMBL PF05701.6 gi|119720446|ref|YP_920941.1| - 1.4 7.2 21.0 0.2 10.0 7.8 2.4 2 0 0 2 2 2 0 Weak chloroplast movement under blue light ERM PF00769.14 gi|119720446|ref|YP_920941.1| - 2 7.8 25.1 0.68 9.4 3.6 2.7 2 1 1 3 3 3 0 Ezrin/radixin/moesin family Rab5-bind PF09311.6 gi|119720446|ref|YP_920941.1| - 2.3 8.1 18.4 13 5.6 2.9 2.5 1 1 1 2 2 2 0 Rabaptin-like protein DUF4201 PF13870.1 gi|119720446|ref|YP_920941.1| - 3.1 7.1 16.5 4.1 6.8 1.0 3.2 2 1 2 4 4 3 0 Domain of unknown function (DUF4201) TMF_TATA_bd PF12325.3 gi|119720446|ref|YP_920941.1| - 4.1 7.1 21.9 1 9.0 5.4 2.9 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding UPF0449 PF15136.1 gi|119720446|ref|YP_920941.1| - 4.8 7.4 9.9 34 4.7 0.5 3.3 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 DUF4446 PF14584.1 gi|119720446|ref|YP_920941.1| - 5 6.9 7.9 8.6 6.1 0.8 3.2 2 1 3 5 5 5 0 Protein of unknown function (DUF4446) DUF904 PF06005.7 gi|119720446|ref|YP_920941.1| - 5.5 7.3 32.1 12 6.3 7.2 4.4 2 2 1 3 3 2 0 Protein of unknown function (DUF904) IncA PF04156.9 gi|119720446|ref|YP_920941.1| - 5.5 6.5 28.4 5 6.6 16.1 2.8 2 1 0 2 2 2 0 IncA protein Occludin_ELL PF07303.8 gi|119720446|ref|YP_920941.1| - 6.2 7.6 6.6 12 6.6 0.8 2.7 1 1 2 3 3 3 0 Occludin homology domain DUF1843 PF08898.5 gi|119720446|ref|YP_920941.1| - 6.6 6.8 13.8 6 6.9 0.1 4.5 2 1 3 5 5 5 0 Domain of unknown function (DUF1843) Laminin_II PF06009.7 gi|119720446|ref|YP_920941.1| - 9.5 5.9 6.6 4.7 6.9 1.7 2.5 2 1 0 2 2 2 0 Laminin Domain II ECF-ribofla_trS PF07155.7 gi|119720447|ref|YP_920942.1| - 1.4e-08 34.6 19.7 2.9e-08 33.6 10.9 2.2 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component Thia_YuaJ PF09515.5 gi|119720447|ref|YP_920942.1| - 2.1e-06 27.6 5.8 2.1e-06 27.6 4.0 2.2 2 1 0 2 2 2 1 Thiamine transporter protein (Thia_YuaJ) DUF3816 PF12822.2 gi|119720447|ref|YP_920942.1| - 5.3e-06 26.4 11.2 7.8e-06 25.8 7.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) 5TM-5TMR_LYT PF07694.7 gi|119720447|ref|YP_920942.1| - 0.027 13.8 9.6 0.015 14.6 2.9 2.2 2 0 0 2 2 2 0 5TMR of 5TMR-LYT ABC_tran PF00005.22 gi|119720448|ref|YP_920943.1| - 3.1e-56 189.4 0.0 7.7e-27 94.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|119720448|ref|YP_920943.1| - 3.5e-20 73.1 0.2 1.6e-05 24.9 0.0 4.1 2 2 2 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|119720448|ref|YP_920943.1| - 9.5e-11 41.0 0.4 5.1e-05 22.7 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119720448|ref|YP_920943.1| - 2.2e-10 40.1 0.0 0.012 14.8 0.0 3.8 2 2 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|119720448|ref|YP_920943.1| - 6.1e-08 32.8 0.3 0.0063 16.5 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|119720448|ref|YP_920943.1| - 4.4e-07 30.0 0.2 0.11 12.6 0.1 4.1 3 1 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|119720448|ref|YP_920943.1| - 3e-06 26.7 0.6 0.18 11.1 0.0 3.8 3 1 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|119720448|ref|YP_920943.1| - 4.9e-06 25.8 0.0 0.028 13.6 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|119720448|ref|YP_920943.1| - 4e-05 22.8 0.0 0.19 10.8 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|119720448|ref|YP_920943.1| - 0.00023 21.9 0.1 0.53 11.1 0.0 2.9 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|119720448|ref|YP_920943.1| - 0.00024 20.9 0.0 0.083 12.8 0.0 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|119720448|ref|YP_920943.1| - 0.0003 19.7 0.0 0.18 10.6 0.0 2.9 3 0 0 3 3 3 1 Type II/IV secretion system protein MobB PF03205.9 gi|119720448|ref|YP_920943.1| - 0.00052 19.7 0.1 1.3 8.7 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|119720448|ref|YP_920943.1| - 0.00053 19.8 0.8 0.31 10.9 0.0 3.2 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.10 gi|119720448|ref|YP_920943.1| - 0.00065 19.4 0.4 0.26 10.9 0.0 3.3 3 0 0 3 3 3 1 NTPase AAA_10 PF12846.2 gi|119720448|ref|YP_920943.1| - 0.00081 18.9 0.8 0.2 11.0 0.1 3.2 3 0 0 3 3 3 1 AAA-like domain UPF0079 PF02367.12 gi|119720448|ref|YP_920943.1| - 0.0013 18.3 0.0 0.019 14.5 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|119720448|ref|YP_920943.1| - 0.0014 19.0 0.2 1.3 9.5 0.0 3.1 3 0 0 3 3 3 1 Miro-like protein MMR_HSR1 PF01926.18 gi|119720448|ref|YP_920943.1| - 0.0016 18.3 0.1 1.8 8.5 0.0 2.9 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|119720448|ref|YP_920943.1| - 0.0019 17.8 0.0 0.3 10.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|119720448|ref|YP_920943.1| - 0.0021 17.8 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 1 Archaeal ATPase RNA_helicase PF00910.17 gi|119720448|ref|YP_920943.1| - 0.0022 18.1 0.0 0.31 11.2 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_23 PF13476.1 gi|119720448|ref|YP_920943.1| - 0.0035 17.6 0.0 0.24 11.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|119720448|ref|YP_920943.1| - 0.0044 17.0 0.1 4.2 7.2 0.0 3.2 3 0 0 3 3 3 0 AAA domain NACHT PF05729.7 gi|119720448|ref|YP_920943.1| - 0.0046 16.6 0.0 0.067 12.8 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|119720448|ref|YP_920943.1| - 0.0078 15.9 0.7 0.17 11.6 0.0 3.1 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|119720448|ref|YP_920943.1| - 0.009 15.5 0.0 0.74 9.3 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.17 gi|119720448|ref|YP_920943.1| - 0.012 14.4 0.1 0.17 10.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain ATP_bind_1 PF03029.12 gi|119720448|ref|YP_920943.1| - 0.012 15.1 0.5 3.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|119720448|ref|YP_920943.1| - 0.013 15.3 0.1 6.2 6.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain KaiC PF06745.8 gi|119720448|ref|YP_920943.1| - 0.019 14.0 0.7 6.3 5.8 0.0 3.2 4 0 0 4 4 3 0 KaiC ABC_ATPase PF09818.4 gi|119720448|ref|YP_920943.1| - 0.028 13.0 0.0 3.5 6.1 0.0 2.8 4 0 0 4 4 4 0 Predicted ATPase of the ABC class APS_kinase PF01583.15 gi|119720448|ref|YP_920943.1| - 0.03 13.9 0.1 1.3 8.7 0.0 2.6 3 0 0 3 3 2 0 Adenylylsulphate kinase AAA_PrkA PF08298.6 gi|119720448|ref|YP_920943.1| - 0.034 12.8 0.1 1 7.9 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain CPT PF07931.7 gi|119720448|ref|YP_920943.1| - 0.049 13.2 0.0 6.9 6.2 0.0 3.1 4 0 0 4 4 3 0 Chloramphenicol phosphotransferase-like protein PIF1 PF05970.9 gi|119720448|ref|YP_920943.1| - 0.05 12.5 0.0 0.38 9.6 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_15 PF13175.1 gi|119720448|ref|YP_920943.1| - 0.059 12.4 0.0 5 6.0 0.0 2.6 3 0 0 3 3 3 0 AAA ATPase domain Fer4_NifH PF00142.13 gi|119720448|ref|YP_920943.1| - 0.064 12.4 0.1 0.15 11.2 0.0 1.6 2 0 0 2 2 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family G-alpha PF00503.15 gi|119720448|ref|YP_920943.1| - 0.068 11.8 0.1 0.2 10.2 0.0 1.6 2 0 0 2 2 2 0 G-protein alpha subunit AAA_18 PF13238.1 gi|119720448|ref|YP_920943.1| - 0.11 12.8 0.1 13 6.1 0.0 3.0 3 0 0 3 3 2 0 AAA domain AAA PF00004.24 gi|119720448|ref|YP_920943.1| - 0.15 12.2 0.1 39 4.4 0.0 3.3 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|119720448|ref|YP_920943.1| - 0.21 10.9 0.8 1.8 7.9 0.1 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain CbiQ PF02361.11 gi|119720449|ref|YP_920944.1| - 2.4e-33 115.5 10.7 3.3e-33 115.1 7.4 1.2 1 0 0 1 1 1 1 Cobalt transport protein Pribosyltran PF00156.22 gi|119720450|ref|YP_920945.1| - 0.033 13.8 0.0 0.073 12.7 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|119720450|ref|YP_920945.1| - 0.091 11.9 0.0 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase ABC_tran PF00005.22 gi|119720451|ref|YP_920946.1| - 2.8e-33 115.1 0.0 4.2e-33 114.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720451|ref|YP_920946.1| - 4.5e-08 33.4 0.0 0.003 17.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|119720451|ref|YP_920946.1| - 5.7e-07 29.4 0.2 2e-06 27.7 0.1 2.0 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|119720451|ref|YP_920946.1| - 1e-05 25.5 0.5 0.23 11.5 0.0 3.2 2 1 0 2 2 2 2 TOBE domain AAA PF00004.24 gi|119720451|ref|YP_920946.1| - 0.00047 20.3 0.0 0.048 13.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|119720451|ref|YP_920946.1| - 0.0016 18.4 0.9 0.0063 16.5 0.6 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|119720451|ref|YP_920946.1| - 0.0026 16.8 0.0 0.067 12.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|119720451|ref|YP_920946.1| - 0.003 16.3 0.0 0.0045 15.7 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|119720451|ref|YP_920946.1| - 0.0062 16.2 0.0 0.022 14.4 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|119720451|ref|YP_920946.1| - 0.0075 16.4 0.4 0.027 14.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720451|ref|YP_920946.1| - 0.011 14.9 0.0 0.47 9.6 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|119720451|ref|YP_920946.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|119720451|ref|YP_920946.1| - 0.028 14.3 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|119720451|ref|YP_920946.1| - 0.031 13.4 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|119720451|ref|YP_920946.1| - 0.072 12.6 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|119720451|ref|YP_920946.1| - 0.076 12.4 0.0 0.41 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain Fn3-like PF14310.1 gi|119720451|ref|YP_920946.1| - 0.11 12.4 0.2 6.1 6.8 0.0 3.2 3 0 0 3 3 3 0 Fibronectin type III-like domain AAA_23 PF13476.1 gi|119720451|ref|YP_920946.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|119720452|ref|YP_920947.1| - 3.7e-15 55.9 15.6 3.7e-15 55.9 10.8 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720453|ref|YP_920948.1| - 1.6e-08 34.2 32.7 3.4e-07 29.9 22.7 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|119720454|ref|YP_920949.1| - 1.7e-32 113.2 1.7 2.3e-32 112.8 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119720454|ref|YP_920949.1| - 8.9e-31 107.7 6.9 1.2e-30 107.2 4.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|119720454|ref|YP_920949.1| - 4.3e-07 29.4 0.2 2.3e-06 27.1 0.1 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119720454|ref|YP_920949.1| - 1.6e-06 27.9 0.0 3.7e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Regulator_TrmB PF11495.3 gi|119720455|ref|YP_920950.1| - 4.3e-53 179.6 0.1 5.2e-53 179.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|119720455|ref|YP_920950.1| - 3.1e-14 52.4 0.1 5.4e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|119720455|ref|YP_920950.1| - 0.00016 20.9 0.2 0.00059 19.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|119720455|ref|YP_920950.1| - 0.0002 21.1 0.0 0.00039 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|119720455|ref|YP_920950.1| - 0.00032 20.4 0.0 0.00068 19.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.15 gi|119720455|ref|YP_920950.1| - 0.00065 19.3 0.1 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|119720455|ref|YP_920950.1| - 0.00065 19.2 0.1 0.0015 18.0 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|119720455|ref|YP_920950.1| - 0.0018 18.5 0.1 0.0042 17.3 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|119720455|ref|YP_920950.1| - 0.0022 17.6 0.0 0.0063 16.1 0.0 1.8 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|119720455|ref|YP_920950.1| - 0.014 15.5 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF4393 PF14337.1 gi|119720455|ref|YP_920950.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) FeoC PF09012.5 gi|119720455|ref|YP_920950.1| - 0.16 11.6 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator GHL6 PF14871.1 gi|119720456|ref|YP_920951.1| - 2.7e-38 130.9 0.0 7.4e-38 129.5 0.0 1.7 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 DUF187 PF02638.10 gi|119720456|ref|YP_920951.1| - 1.4e-08 33.9 0.0 2.2e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase like GH101 DUF4015 PF13200.1 gi|119720456|ref|YP_920951.1| - 3.5e-08 32.7 0.0 5.2e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain Glyco_hydro_42M PF08532.5 gi|119720456|ref|YP_920951.1| - 2.4e-07 30.1 0.0 7.6e-07 28.4 0.0 1.8 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain DUF4434 PF14488.1 gi|119720456|ref|YP_920951.1| - 4.7e-05 23.1 0.0 9.3e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4434) CoA_binding_2 PF13380.1 gi|119720456|ref|YP_920951.1| - 0.06 13.5 0.1 12 6.1 0.0 3.2 2 1 0 2 2 2 0 CoA binding domain DUF1706 PF08020.6 gi|119720456|ref|YP_920951.1| - 0.18 11.2 0.0 0.3 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1706) ABC_tran PF00005.22 gi|119720457|ref|YP_920952.1| - 2.9e-37 128.0 0.0 4.1e-37 127.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720457|ref|YP_920952.1| - 1.2e-08 35.2 0.0 0.00014 21.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|119720457|ref|YP_920952.1| - 2.5e-08 33.8 1.4 1.2e-07 31.5 0.4 2.5 1 1 1 2 2 2 1 TOBE domain AAA PF00004.24 gi|119720457|ref|YP_920952.1| - 0.0017 18.5 0.2 0.015 15.5 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TOBE PF03459.12 gi|119720457|ref|YP_920952.1| - 0.0017 18.3 0.6 1.5 8.9 0.0 2.9 3 0 0 3 3 3 2 TOBE domain Rad17 PF03215.10 gi|119720457|ref|YP_920952.1| - 0.003 16.3 0.0 0.0037 16.0 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_15 PF13175.1 gi|119720457|ref|YP_920952.1| - 0.0033 16.5 0.0 0.021 13.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|119720457|ref|YP_920952.1| - 0.0068 15.6 0.1 0.046 12.9 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|119720457|ref|YP_920952.1| - 0.02 15.0 1.1 0.44 10.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|119720457|ref|YP_920952.1| - 0.034 14.0 0.1 0.25 11.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|119720457|ref|YP_920952.1| - 0.036 13.7 0.2 0.18 11.5 0.2 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|119720457|ref|YP_920952.1| - 0.046 13.4 0.1 0.15 11.8 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|119720457|ref|YP_920952.1| - 0.047 13.6 0.8 0.12 12.3 0.6 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|119720457|ref|YP_920952.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RapA_C PF12137.3 gi|119720457|ref|YP_920952.1| - 0.14 10.9 0.1 0.2 10.4 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal AAA_10 PF12846.2 gi|119720457|ref|YP_920952.1| - 0.2 11.0 0.3 4 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|119720457|ref|YP_920952.1| - 0.42 11.4 2.6 2.4 9.0 1.8 2.6 1 1 0 1 1 1 0 AAA domain SBP_bac_6 PF13343.1 gi|119720458|ref|YP_920953.1| - 1.6e-33 116.0 0.3 2.4e-33 115.4 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|119720458|ref|YP_920953.1| - 2.8e-21 76.4 0.1 4.5e-21 75.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119720458|ref|YP_920953.1| - 3.4e-20 72.6 0.1 4.8e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119720458|ref|YP_920953.1| - 4.5e-16 59.4 3.4 6.3e-16 58.9 2.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4330 PF14221.1 gi|119720458|ref|YP_920953.1| - 0.22 11.3 1.2 5.8 6.7 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) BPD_transp_1 PF00528.17 gi|119720459|ref|YP_920954.1| - 2.5e-30 105.3 51.0 7.9e-18 64.6 10.3 3.5 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.11 gi|119720459|ref|YP_920954.1| - 0.009 15.6 1.7 0.61 9.7 0.2 2.6 2 0 0 2 2 2 2 MotA/TolQ/ExbB proton channel family GIDA_assoc_3 PF13932.1 gi|119720459|ref|YP_920954.1| - 0.023 14.7 0.1 1.9 8.5 0.1 2.5 2 0 0 2 2 2 0 GidA associated domain 3 HTH_28 PF13518.1 gi|119720459|ref|YP_920954.1| - 0.027 14.4 0.0 1.2 9.1 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|119720459|ref|YP_920954.1| - 0.13 11.9 0.6 2.2 8.0 0.0 2.7 3 0 0 3 3 3 0 Homeodomain-like domain HEPN PF05168.9 gi|119720460|ref|YP_920955.1| - 3.8e-14 52.5 0.3 4.8e-14 52.2 0.2 1.2 1 0 0 1 1 1 1 HEPN domain DUF2390 PF09523.5 gi|119720460|ref|YP_920955.1| - 0.049 13.8 1.0 1.1 9.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2390) DUF4398 PF14346.1 gi|119720460|ref|YP_920955.1| - 5.2 7.1 6.7 4.4 7.4 1.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) MFS_1 PF07690.11 gi|119720461|ref|YP_920956.1| - 2 7.0 33.3 0.2 10.3 17.5 2.0 1 1 0 2 2 2 0 Major Facilitator Superfamily ABC_tran PF00005.22 gi|119720463|ref|YP_920958.1| - 1e-29 103.5 0.0 1.5e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720463|ref|YP_920958.1| - 2.5e-12 47.3 0.0 5.1e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|119720463|ref|YP_920958.1| - 2.3e-06 28.0 0.0 4.3e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.1 gi|119720463|ref|YP_920958.1| - 0.00029 20.8 0.0 0.0012 18.8 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|119720463|ref|YP_920958.1| - 0.0059 16.1 0.1 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|119720463|ref|YP_920958.1| - 0.012 15.7 0.0 0.033 14.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|119720463|ref|YP_920958.1| - 0.016 14.7 0.5 0.035 13.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|119720463|ref|YP_920958.1| - 0.016 15.1 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|119720463|ref|YP_920958.1| - 0.018 15.3 0.0 0.028 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|119720463|ref|YP_920958.1| - 0.023 14.4 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|119720463|ref|YP_920958.1| - 0.027 14.6 0.0 0.048 13.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF258 PF03193.11 gi|119720463|ref|YP_920958.1| - 0.031 13.4 0.1 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|119720463|ref|YP_920958.1| - 0.035 13.6 0.0 0.055 12.9 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|119720463|ref|YP_920958.1| - 0.041 13.2 0.1 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|119720463|ref|YP_920958.1| - 0.056 13.0 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|119720463|ref|YP_920958.1| - 0.068 13.3 0.0 0.67 10.1 0.0 2.3 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|119720463|ref|YP_920958.1| - 0.079 12.1 0.0 0.47 9.6 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|119720463|ref|YP_920958.1| - 0.084 12.2 0.1 0.23 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain UPF0079 PF02367.12 gi|119720463|ref|YP_920958.1| - 0.095 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|119720463|ref|YP_920958.1| - 0.099 11.0 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|119720463|ref|YP_920958.1| - 0.12 11.3 0.0 5 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF3584 PF12128.3 gi|119720463|ref|YP_920958.1| - 0.18 9.1 0.0 0.24 8.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane PF01061.19 gi|119720464|ref|YP_920959.1| - 6.9e-34 116.8 14.0 6.9e-34 116.8 9.7 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|119720464|ref|YP_920959.1| - 8e-15 54.7 19.1 9.7e-15 54.4 13.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720464|ref|YP_920959.1| - 2.1e-05 23.7 17.1 2.9e-05 23.3 11.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|119720464|ref|YP_920959.1| - 2.6e-05 23.2 16.1 3.8e-05 22.6 11.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein TrmB PF01978.14 gi|119720465|ref|YP_920960.1| - 3.3e-21 74.7 0.0 3.3e-21 74.7 0.0 2.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|119720465|ref|YP_920960.1| - 0.00082 19.4 0.0 0.0023 18.0 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn helix HTH_IclR PF09339.5 gi|119720465|ref|YP_920960.1| - 0.0019 17.7 0.2 0.009 15.5 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|119720465|ref|YP_920960.1| - 0.0031 17.5 0.0 0.0082 16.2 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator DUF3197 PF11432.3 gi|119720465|ref|YP_920960.1| - 0.0097 15.9 0.1 0.025 14.6 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3197) FaeA PF04703.7 gi|119720465|ref|YP_920960.1| - 0.016 15.3 0.1 3.4 7.9 0.0 2.3 1 1 1 2 2 2 0 FaeA-like protein HTH_28 PF13518.1 gi|119720465|ref|YP_920960.1| - 0.068 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|119720465|ref|YP_920960.1| - 0.076 12.4 1.1 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding KaiC PF06745.8 gi|119720466|ref|YP_920961.1| - 1.5e-25 89.6 0.0 1.8e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 KaiC FMN_dh PF01070.13 gi|119720466|ref|YP_920961.1| - 0.11 11.2 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Na_sulph_symp PF00939.14 gi|119720467|ref|YP_920962.1| - 5.4e-85 286.0 41.6 6.3e-85 285.8 28.8 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region Transglut_core2 PF13369.1 gi|119720467|ref|YP_920962.1| - 0.13 11.6 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Transglutaminase-like superfamily DUF3995 PF13160.1 gi|119720468|ref|YP_920963.1| - 0.1 12.6 3.4 0.61 10.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) NPCBM_assoc PF10633.4 gi|119720468|ref|YP_920963.1| - 0.11 12.5 2.1 8 6.6 0.0 3.3 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF347 PF03988.7 gi|119720468|ref|YP_920963.1| - 6 6.8 7.4 8.6 6.3 0.5 2.5 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) Beta-Casp PF10996.3 gi|119720469|ref|YP_920964.1| - 4.5e-14 52.4 0.0 8.5e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|119720469|ref|YP_920964.1| - 3.1e-12 46.5 1.8 5e-12 45.8 0.4 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|119720469|ref|YP_920964.1| - 1.2e-08 34.7 0.0 3.3e-08 33.3 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PhosphMutase PF10143.4 gi|119720470|ref|YP_920965.1| - 5.8e-60 201.8 0.0 8.2e-60 201.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|119720470|ref|YP_920965.1| - 6.7e-48 163.2 0.0 7.6e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|119720470|ref|YP_920965.1| - 0.00017 20.4 0.0 0.00024 19.9 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase CoA_binding_2 PF13380.1 gi|119720470|ref|YP_920965.1| - 0.094 12.8 0.0 2.5 8.2 0.0 2.4 2 0 0 2 2 2 0 CoA binding domain DUF2384 PF09722.5 gi|119720470|ref|YP_920965.1| - 0.11 12.3 0.1 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Cu_amine_oxidN2 PF02727.11 gi|119720471|ref|YP_920966.1| - 0.058 13.4 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Copper amine oxidase, N2 domain RuBisCO_large PF00016.15 gi|119720472|ref|YP_920967.1| - 0.011 14.6 0.2 0.059 12.2 0.0 1.8 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, catalytic domain ParG PF09274.5 gi|119720472|ref|YP_920967.1| - 0.059 13.3 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 ParG DUF2421 PF10334.4 gi|119720472|ref|YP_920967.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2421) AhpC-TSA PF00578.16 gi|119720473|ref|YP_920968.1| - 5.7e-38 129.3 0.0 8.2e-38 128.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|119720473|ref|YP_920968.1| - 6.1e-18 64.7 0.0 8.3e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|119720473|ref|YP_920968.1| - 6.7e-14 51.2 0.1 1.3e-13 50.3 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Thioredoxin_8 PF13905.1 gi|119720473|ref|YP_920968.1| - 0.0042 17.1 0.0 0.0066 16.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like NurA PF09376.5 gi|119720474|ref|YP_920969.1| - 4.5e-15 55.8 5.4 1.4e-14 54.2 3.0 2.3 1 1 1 2 2 2 1 NurA domain DUF87 PF01935.12 gi|119720475|ref|YP_920970.1| - 2.7e-39 135.3 0.0 4.6e-39 134.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|119720475|ref|YP_920970.1| - 2.8e-23 82.8 0.0 3.9e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|119720475|ref|YP_920970.1| - 3.8e-07 29.8 0.0 0.004 16.6 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|119720475|ref|YP_920970.1| - 4.7e-06 25.4 0.0 0.0073 14.9 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|119720475|ref|YP_920970.1| - 8.8e-06 24.3 0.0 0.005 15.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) T4SS-DNA_transf PF02534.9 gi|119720475|ref|YP_920970.1| - 3.5e-05 22.5 0.0 4.8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer Zot PF05707.7 gi|119720475|ref|YP_920970.1| - 4.1e-05 23.1 0.0 0.00015 21.3 0.0 1.9 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA PF00004.24 gi|119720475|ref|YP_920970.1| - 0.0019 18.3 0.0 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HAS-barrel PF09378.5 gi|119720475|ref|YP_920970.1| - 0.0037 17.1 0.3 0.04 13.8 0.0 2.6 2 1 0 2 2 2 1 HAS barrel domain GRIM-19 PF06212.7 gi|119720475|ref|YP_920970.1| - 0.022 14.4 0.0 0.18 11.4 0.0 2.1 2 0 0 2 2 2 0 GRIM-19 protein AAA_22 PF13401.1 gi|119720475|ref|YP_920970.1| - 0.09 12.9 0.0 9.8 6.3 0.0 2.6 2 1 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|119720475|ref|YP_920970.1| - 0.12 11.9 0.0 12 5.3 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase Metallophos_2 PF12850.2 gi|119720476|ref|YP_920971.1| - 1.2e-10 41.4 0.0 1.7e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|119720476|ref|YP_920971.1| - 7.3e-10 38.5 0.1 1.1e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase AAA_23 PF13476.1 gi|119720477|ref|YP_920972.1| - 9.7e-20 71.7 1.6 9.7e-20 71.7 1.1 5.1 1 1 2 3 3 2 1 AAA domain AAA_27 PF13514.1 gi|119720477|ref|YP_920972.1| - 1.1e-10 39.9 20.4 2.7e-10 38.6 12.3 3.8 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|119720477|ref|YP_920972.1| - 9.6e-09 34.7 0.0 7.3e-08 31.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF869 PF05911.6 gi|119720477|ref|YP_920972.1| - 1.1e-05 23.9 18.9 1.1e-05 23.9 13.1 3.3 3 0 0 3 3 3 2 Plant protein of unknown function (DUF869) SbcCD_C PF13558.1 gi|119720477|ref|YP_920972.1| - 0.00017 21.4 0.2 0.00075 19.3 0.0 2.3 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit NPV_P10 PF05531.7 gi|119720477|ref|YP_920972.1| - 0.00029 21.0 7.3 16 5.8 0.2 5.7 6 0 0 6 6 6 0 Nucleopolyhedrovirus P10 protein AAA_29 PF13555.1 gi|119720477|ref|YP_920972.1| - 0.00056 19.3 0.0 0.0025 17.2 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|119720477|ref|YP_920972.1| - 0.00087 18.4 0.8 0.0025 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Reo_sigmaC PF04582.7 gi|119720477|ref|YP_920972.1| - 0.00092 18.4 3.7 2.6 7.1 0.0 3.6 4 0 0 4 4 4 2 Reovirus sigma C capsid protein GAS PF13851.1 gi|119720477|ref|YP_920972.1| - 0.0043 16.2 73.4 0.0053 15.9 0.9 4.6 3 2 1 4 4 4 2 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.7 gi|119720477|ref|YP_920972.1| - 0.01 15.6 2.3 11 5.8 0.0 4.5 4 1 0 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus LMBR1 PF04791.11 gi|119720477|ref|YP_920972.1| - 0.015 13.9 0.1 0.4 9.2 0.0 2.7 2 1 0 2 2 2 0 LMBR1-like membrane protein AAA_21 PF13304.1 gi|119720477|ref|YP_920972.1| - 0.022 14.7 2.1 3.9 7.3 0.2 3.5 3 1 0 3 3 3 0 AAA domain CENP-F_leu_zip PF10473.4 gi|119720477|ref|YP_920972.1| - 0.036 13.9 87.9 0.029 14.2 8.4 5.5 3 2 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.1 gi|119720477|ref|YP_920972.1| - 0.038 12.4 36.1 3.6 5.9 3.0 5.1 4 2 1 6 6 6 0 AAA domain ADIP PF11559.3 gi|119720477|ref|YP_920972.1| - 0.18 11.6 60.9 0.067 13.0 0.5 5.9 4 2 1 5 5 5 0 Afadin- and alpha -actinin-Binding DUF3053 PF11254.3 gi|119720477|ref|YP_920972.1| - 0.56 9.4 2.2 1.2 8.3 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3053) Retrotrans_gag PF03732.12 gi|119720477|ref|YP_920972.1| - 1.4 9.0 9.6 0.09 12.8 0.7 3.3 2 1 1 3 3 3 0 Retrotransposon gag protein Phage_GP20 PF06810.6 gi|119720477|ref|YP_920972.1| - 1.4 8.2 34.9 1.2 8.5 0.2 5.2 4 1 1 5 5 5 0 Phage minor structural protein GP20 Fib_alpha PF08702.5 gi|119720477|ref|YP_920972.1| - 2.6 8.1 22.4 3.4 7.8 4.6 4.8 4 2 1 5 5 5 0 Fibrinogen alpha/beta chain family COG2 PF06148.6 gi|119720477|ref|YP_920972.1| - 3.1 7.6 45.3 1.6 8.6 0.4 6.3 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.7 gi|119720477|ref|YP_920972.1| - 3.7 7.3 29.6 5.1 6.9 0.1 6.1 4 1 1 6 6 6 0 Protein of unknown function (DUF1664) Cauli_AT PF03233.8 gi|119720477|ref|YP_920972.1| - 5.7 6.6 27.9 5.3 6.7 3.2 5.7 5 1 1 6 6 6 0 Aphid transmission protein 2-Hacid_dh_C PF02826.14 gi|119720478|ref|YP_920973.1| - 1.8e-56 190.0 0.0 2.4e-56 189.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|119720478|ref|YP_920973.1| - 3e-18 65.5 0.0 3.7e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.16 gi|119720478|ref|YP_920973.1| - 2.1e-06 27.6 0.0 3.6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|119720478|ref|YP_920973.1| - 1.4e-05 25.3 0.4 0.00013 22.3 0.0 2.5 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|119720478|ref|YP_920973.1| - 3e-05 23.9 0.0 6.1e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|119720478|ref|YP_920973.1| - 4.3e-05 22.9 0.0 8e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|119720478|ref|YP_920973.1| - 0.00017 21.1 0.1 0.44 10.1 0.0 2.3 1 1 1 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|119720478|ref|YP_920973.1| - 0.00029 20.9 0.0 0.00068 19.6 0.0 1.6 1 0 0 1 1 1 1 NADH(P)-binding TrkA_N PF02254.13 gi|119720478|ref|YP_920973.1| - 0.00036 20.4 0.7 0.002 18.1 0.0 2.4 2 1 0 2 2 2 1 TrkA-N domain XdhC_C PF13478.1 gi|119720478|ref|YP_920973.1| - 0.0011 19.3 0.0 0.0024 18.1 0.0 1.6 1 1 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.22 gi|119720478|ref|YP_920973.1| - 0.0012 19.2 0.1 0.095 13.1 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_chain PF00289.17 gi|119720478|ref|YP_920973.1| - 0.0089 16.1 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|119720478|ref|YP_920973.1| - 0.01 15.5 0.2 0.67 9.6 0.0 2.3 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF364 PF04016.7 gi|119720478|ref|YP_920973.1| - 0.016 14.5 0.1 0.095 12.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF364) Gp_dh_N PF00044.19 gi|119720478|ref|YP_920973.1| - 0.024 14.6 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|119720478|ref|YP_920973.1| - 0.027 14.7 0.1 0.11 12.7 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|119720478|ref|YP_920973.1| - 0.06 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|119720478|ref|YP_920973.1| - 0.075 12.6 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Peripla_BP_6 PF13458.1 gi|119720479|ref|YP_920974.1| - 4.8e-41 141.2 5.5 5.8e-41 140.9 3.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|119720479|ref|YP_920974.1| - 2.8e-34 118.4 0.2 3.5e-34 118.1 0.1 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|119720479|ref|YP_920974.1| - 1.1e-10 40.7 0.0 8.6e-10 37.8 0.0 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.8 gi|119720479|ref|YP_920974.1| - 1.4e-09 37.1 0.3 1.9e-09 36.6 0.2 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_1 PF00532.16 gi|119720479|ref|YP_920974.1| - 0.0014 17.8 0.0 0.69 9.0 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding proteins and sugar binding domain of LacI family PrpR_N PF06506.6 gi|119720479|ref|YP_920974.1| - 0.049 13.0 0.5 0.095 12.1 0.0 1.7 2 0 0 2 2 2 0 Propionate catabolism activator DapB_N PF01113.15 gi|119720479|ref|YP_920974.1| - 0.09 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus BPD_transp_2 PF02653.11 gi|119720480|ref|YP_920975.1| - 1.9e-31 109.0 35.9 2.5e-31 108.6 24.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|119720481|ref|YP_920976.1| - 1.4e-42 145.5 28.1 1.7e-42 145.2 19.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|119720482|ref|YP_920977.1| - 4.5e-24 85.2 0.0 5.7e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|119720482|ref|YP_920977.1| - 4.5e-09 35.7 0.1 7.4e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|119720482|ref|YP_920977.1| - 6.8e-08 32.8 1.5 4.5e-06 26.8 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|119720482|ref|YP_920977.1| - 0.00012 22.4 0.1 0.00019 21.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720482|ref|YP_920977.1| - 0.00015 21.2 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|119720482|ref|YP_920977.1| - 0.00041 19.6 0.0 0.094 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|119720482|ref|YP_920977.1| - 0.021 14.5 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|119720482|ref|YP_920977.1| - 0.037 13.4 0.5 3.6 6.9 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|119720482|ref|YP_920977.1| - 0.07 12.0 0.0 0.15 10.9 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|119720482|ref|YP_920977.1| - 0.08 13.0 0.0 0.26 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|119720482|ref|YP_920977.1| - 0.11 12.1 0.3 0.36 10.5 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|119720482|ref|YP_920977.1| - 0.12 13.2 0.0 0.27 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|119720482|ref|YP_920977.1| - 0.12 11.2 0.2 0.18 10.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|119720482|ref|YP_920977.1| - 0.16 11.8 0.0 0.47 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|119720483|ref|YP_920978.1| - 6.9e-33 113.8 0.0 9.5e-33 113.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720483|ref|YP_920978.1| - 4e-13 49.9 0.1 6.9e-11 42.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720483|ref|YP_920978.1| - 8.8e-06 25.1 0.4 0.027 13.7 0.1 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|119720483|ref|YP_920978.1| - 8.5e-05 22.6 0.1 0.00091 19.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|119720483|ref|YP_920978.1| - 0.00012 21.5 0.5 0.07 12.5 0.1 2.1 1 1 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|119720483|ref|YP_920978.1| - 0.00027 20.9 0.0 0.00055 19.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|119720483|ref|YP_920978.1| - 0.00045 20.5 0.6 0.00054 20.3 0.4 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720483|ref|YP_920978.1| - 0.00052 19.4 0.1 0.0012 18.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|119720483|ref|YP_920978.1| - 0.00075 19.3 0.0 0.0027 17.5 0.0 1.8 1 1 0 1 1 1 1 Dynamin family SbcCD_C PF13558.1 gi|119720483|ref|YP_920978.1| - 0.00092 19.0 0.0 0.012 15.4 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|119720483|ref|YP_920978.1| - 0.001 18.3 0.1 0.0022 17.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|119720483|ref|YP_920978.1| - 0.001 18.2 0.0 0.64 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain ABC_ATPase PF09818.4 gi|119720483|ref|YP_920978.1| - 0.0013 17.4 1.0 1.4 7.4 0.0 3.0 3 0 0 3 3 3 1 Predicted ATPase of the ABC class AAA_30 PF13604.1 gi|119720483|ref|YP_920978.1| - 0.024 14.2 0.6 0.095 12.2 0.1 2.0 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|119720483|ref|YP_920978.1| - 0.058 12.7 0.1 0.58 9.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|119720483|ref|YP_920978.1| - 0.061 13.5 0.2 0.52 10.5 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|119720483|ref|YP_920978.1| - 0.1 12.0 0.4 0.2 11.0 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.1 gi|119720483|ref|YP_920978.1| - 0.11 10.9 0.1 2.8 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|119720483|ref|YP_920978.1| - 0.12 11.8 0.1 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|119720483|ref|YP_920978.1| - 0.18 11.5 2.0 0.47 10.2 0.1 2.3 3 0 0 3 3 3 0 Part of AAA domain GDPD PF03009.12 gi|119720484|ref|YP_920979.1| - 5.7e-38 130.8 0.0 1.1e-36 126.6 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|119720484|ref|YP_920979.1| - 1.6e-06 28.1 0.4 3.4e-05 23.8 0.2 2.5 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.14 gi|119720484|ref|YP_920979.1| - 0.0052 16.2 0.0 0.0091 15.4 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylinositol-specific phospholipase C, X domain EAL PF00563.15 gi|119720484|ref|YP_920979.1| - 0.0076 15.7 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 EAL domain PEP_mutase PF13714.1 gi|119720484|ref|YP_920979.1| - 0.016 14.4 0.2 4.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Abhydrolase_3 PF07859.8 gi|119720484|ref|YP_920979.1| - 0.034 13.7 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold Radical_SAM PF04055.16 gi|119720485|ref|YP_920980.1| - 4e-20 72.6 0.0 7.1e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|119720485|ref|YP_920980.1| - 2.3e-07 30.8 0.0 4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|119720485|ref|YP_920980.1| - 0.0016 18.5 0.0 0.0026 17.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DDE_Tnp_1_6 PF13751.1 gi|119720486|ref|YP_920981.1| - 3.9 7.4 5.6 14 5.7 0.3 2.4 2 0 0 2 2 2 0 Transposase DDE domain EndIII_4Fe-2S PF10576.4 gi|119720486|ref|YP_920981.1| - 7.2 6.9 11.9 3.3 8.0 1.5 2.9 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III Arch_ATPase PF01637.13 gi|119720487|ref|YP_920982.1| - 5.9e-28 98.1 0.0 1.5e-27 96.7 0.0 1.8 2 1 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|119720487|ref|YP_920982.1| - 1.4e-09 37.9 0.0 0.00089 19.1 0.0 2.6 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|119720487|ref|YP_920982.1| - 1e-06 28.9 0.2 6.2e-06 26.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|119720487|ref|YP_920982.1| - 1.1e-06 28.7 0.8 1.3e-05 25.3 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain PadR PF03551.9 gi|119720487|ref|YP_920982.1| - 0.0089 15.7 0.5 0.037 13.7 0.1 2.3 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|119720487|ref|YP_920982.1| - 0.026 14.1 0.1 0.1 12.2 0.1 2.0 1 0 0 1 1 1 0 HxlR-like helix-turn-helix KAP_NTPase PF07693.9 gi|119720487|ref|YP_920982.1| - 0.059 12.3 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain Acetyltransf_1 PF00583.19 gi|119720488|ref|YP_920983.1| - 5.8e-19 67.9 1.1 9.2e-19 67.2 0.7 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|119720488|ref|YP_920983.1| - 3e-11 43.4 0.3 5.6e-11 42.5 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|119720488|ref|YP_920983.1| - 6.2e-11 42.2 0.3 7.6e-11 41.9 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|119720488|ref|YP_920983.1| - 1.2e-10 40.9 0.3 2.4e-10 40.0 0.2 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|119720488|ref|YP_920983.1| - 2.7e-09 37.0 0.2 3.8e-09 36.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|119720488|ref|YP_920983.1| - 6.5e-09 35.8 0.0 9.1e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|119720488|ref|YP_920983.1| - 1.3e-08 35.0 0.1 1.7e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|119720488|ref|YP_920983.1| - 2.4e-08 34.0 0.0 2.9e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|119720488|ref|YP_920983.1| - 0.0074 15.8 0.2 0.0097 15.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|119720488|ref|YP_920983.1| - 0.13 12.1 0.2 0.26 11.1 0.1 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Peptidase_C15 PF01470.12 gi|119720489|ref|YP_920984.1| - 4.9e-65 219.1 0.0 5.5e-65 219.0 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase SBP_bac_1 PF01547.20 gi|119720491|ref|YP_920986.1| - 3.1e-33 115.8 11.6 5.3e-33 115.0 8.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|119720491|ref|YP_920986.1| - 8e-24 84.8 2.4 1.1e-23 84.3 1.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119720491|ref|YP_920986.1| - 0.0018 17.9 0.1 1.8 8.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein DUF948 PF06103.6 gi|119720491|ref|YP_920986.1| - 0.0036 17.1 0.5 0.0069 16.2 0.3 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) T2SM PF04612.7 gi|119720491|ref|YP_920986.1| - 0.024 14.4 0.6 0.039 13.7 0.4 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M WXG100 PF06013.7 gi|119720491|ref|YP_920986.1| - 0.21 11.6 0.5 2.1 8.4 0.4 2.2 2 0 0 2 2 2 0 Proteins of 100 residues with WXG BPD_transp_1 PF00528.17 gi|119720492|ref|YP_920987.1| - 5.1e-21 75.0 24.7 5.1e-21 75.0 17.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Bacteriocin_IId PF09221.5 gi|119720492|ref|YP_920987.1| - 0.09 12.7 1.6 0.3 11.0 1.1 2.0 1 0 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like BPD_transp_1 PF00528.17 gi|119720493|ref|YP_920988.1| - 5.8e-23 81.3 16.5 5.8e-23 81.3 11.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Regulator_TrmB PF11495.3 gi|119720494|ref|YP_920989.1| - 1.4e-47 161.6 0.0 2.2e-47 160.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|119720494|ref|YP_920989.1| - 6.4e-20 70.6 0.3 1.4e-19 69.5 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|119720494|ref|YP_920989.1| - 4.2e-05 23.1 0.2 0.00042 19.9 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|119720494|ref|YP_920989.1| - 0.00017 21.2 0.3 0.00053 19.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|119720494|ref|YP_920989.1| - 0.00053 19.5 0.4 0.0016 18.0 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|119720494|ref|YP_920989.1| - 0.0055 16.3 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|119720494|ref|YP_920989.1| - 0.022 15.0 0.0 0.093 13.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|119720494|ref|YP_920989.1| - 0.059 13.4 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator DUF3359 PF11839.3 gi|119720494|ref|YP_920989.1| - 0.079 13.3 0.8 0.15 12.3 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) Glycos_transf_1 PF00534.15 gi|119720495|ref|YP_920990.1| - 1.1e-17 64.0 0.1 3e-17 62.5 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720495|ref|YP_920990.1| - 1.5e-11 44.5 0.1 6.2e-11 42.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|119720495|ref|YP_920990.1| - 2.7e-09 37.1 0.0 7.5e-09 35.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 ABC2_membrane PF01061.19 gi|119720496|ref|YP_920991.1| - 2.5e-39 134.6 20.5 3.3e-39 134.2 14.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|119720496|ref|YP_920991.1| - 1.2e-20 73.8 20.8 1.8e-20 73.2 14.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|119720496|ref|YP_920991.1| - 6.7e-08 31.7 16.1 1.2e-07 30.9 11.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|119720496|ref|YP_920991.1| - 5e-06 25.8 18.9 6.7e-06 25.4 13.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF3533 PF12051.3 gi|119720496|ref|YP_920991.1| - 0.22 10.2 12.8 0.11 11.2 7.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3533) ABC_tran PF00005.22 gi|119720497|ref|YP_920992.1| - 3.5e-35 121.2 0.0 5.2e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720497|ref|YP_920992.1| - 2.2e-14 54.1 0.0 2.5e-12 47.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|119720497|ref|YP_920992.1| - 2.3e-07 31.2 0.0 4.9e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|119720497|ref|YP_920992.1| - 6.9e-06 25.3 0.1 0.0014 17.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|119720497|ref|YP_920992.1| - 0.00016 21.1 0.1 0.00029 20.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|119720497|ref|YP_920992.1| - 0.0033 17.6 0.0 0.7 10.0 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|119720497|ref|YP_920992.1| - 0.0047 16.3 0.2 0.02 14.3 0.1 2.0 1 1 1 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|119720497|ref|YP_920992.1| - 0.0062 16.8 0.3 0.018 15.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720497|ref|YP_920992.1| - 0.031 13.5 0.0 0.084 12.0 0.0 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|119720497|ref|YP_920992.1| - 0.1 12.1 0.1 0.54 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|119720497|ref|YP_920992.1| - 0.11 12.3 0.2 0.25 11.1 0.2 1.6 1 0 0 1 1 1 0 Part of AAA domain PadR PF03551.9 gi|119720498|ref|YP_920993.1| - 1.6e-16 59.8 0.0 7.8e-16 57.6 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|119720498|ref|YP_920993.1| - 0.00064 19.7 0.0 0.0012 18.8 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|119720498|ref|YP_920993.1| - 0.017 14.9 0.0 0.053 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_5 PF01022.15 gi|119720498|ref|YP_920993.1| - 0.061 12.9 0.3 0.42 10.3 0.0 2.5 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family UBA_4 PF14555.1 gi|119720498|ref|YP_920993.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain NTP_transf_2 PF01909.18 gi|119720499|ref|YP_920994.1| - 1.2e-07 31.9 0.0 1.2e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|119720499|ref|YP_920994.1| - 0.012 15.2 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|119720500|ref|YP_920995.1| - 1.1e-11 44.7 0.0 1.1e-11 44.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain Rubrerythrin PF02915.12 gi|119720501|ref|YP_920996.1| - 4.3e-06 27.0 1.3 1.8e-05 25.1 0.6 1.9 1 1 1 2 2 2 2 Rubrerythrin BRI3BP PF14965.1 gi|119720501|ref|YP_920996.1| - 0.081 12.2 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 Negative regulator of p53/TP53 MFS_1 PF07690.11 gi|119720502|ref|YP_920997.1| - 4.8e-43 147.2 52.5 4.5e-26 91.3 15.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|119720502|ref|YP_920997.1| - 1.7e-30 105.8 29.2 2.9e-30 105.0 20.3 1.3 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|119720502|ref|YP_920997.1| - 0.00079 17.6 6.4 0.00079 17.6 4.5 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector PhoU PF01895.14 gi|119720503|ref|YP_920998.1| - 4.2e-09 36.7 0.7 9.8e-09 35.5 0.5 1.6 1 0 0 1 1 1 1 PhoU domain Antitoxin-MazE PF04014.13 gi|119720503|ref|YP_920998.1| - 0.022 14.4 0.0 0.075 12.7 0.0 1.9 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DUF1818 PF08848.6 gi|119720503|ref|YP_920998.1| - 0.037 14.0 0.1 0.062 13.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1818) PDDEXK_1 PF12705.2 gi|119720505|ref|YP_921000.1| - 1.4e-08 34.4 3.5 8.9e-06 25.2 1.8 2.9 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.1 gi|119720505|ref|YP_921000.1| - 0.15 12.0 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF4203 PF13886.1 gi|119720506|ref|YP_921001.1| - 0.00035 20.1 26.9 0.00052 19.5 18.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4203) Phage_holin PF04688.8 gi|119720506|ref|YP_921001.1| - 1.6 8.3 3.4 15 5.2 0.0 3.2 3 0 0 3 3 3 0 Phage lysis protein, holin DUF1240 PF06836.7 gi|119720506|ref|YP_921001.1| - 6.3 7.1 7.1 0.8 9.9 0.5 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1240) ParBc PF02195.13 gi|119720507|ref|YP_921002.1| - 1.1e-08 35.0 0.0 1.5e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain PALP PF00291.20 gi|119720508|ref|YP_921003.1| - 4.1e-41 141.2 0.0 5.7e-41 140.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubrerythrin PF02915.12 gi|119720509|ref|YP_921004.1| - 6e-30 104.3 0.6 7.2e-30 104.0 0.4 1.1 1 0 0 1 1 1 1 Rubrerythrin Rubredoxin PF00301.15 gi|119720509|ref|YP_921004.1| - 0.0012 18.7 4.0 0.26 11.2 0.1 2.4 2 0 0 2 2 2 2 Rubredoxin Ferritin PF00210.19 gi|119720509|ref|YP_921004.1| - 0.0023 17.6 0.5 0.0081 15.9 0.3 1.8 1 1 0 1 1 1 1 Ferritin-like domain zf-Sec23_Sec24 PF04810.10 gi|119720509|ref|YP_921004.1| - 0.0038 16.7 0.7 0.07 12.7 0.0 2.2 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger PhnA_Zn_Ribbon PF08274.7 gi|119720509|ref|YP_921004.1| - 0.09 12.5 0.1 0.09 12.5 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.11 gi|119720509|ref|YP_921004.1| - 0.26 11.0 6.1 4.8 6.9 1.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|119720509|ref|YP_921004.1| - 0.26 11.3 4.0 6.4 6.8 0.3 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-FPG_IleRS PF06827.9 gi|119720509|ref|YP_921004.1| - 0.32 10.6 3.9 4.6 6.9 0.3 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Cys_rich_CPCC PF14206.1 gi|119720509|ref|YP_921004.1| - 0.45 10.0 2.9 0.92 9.1 2.0 1.5 1 0 0 1 1 1 0 Cysteine-rich CPCC DUF3039 PF11238.3 gi|119720509|ref|YP_921004.1| - 0.54 9.7 3.3 1.1 8.7 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-ribbon_3 PF13248.1 gi|119720509|ref|YP_921004.1| - 0.63 9.3 6.4 6.1 6.1 4.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|119720509|ref|YP_921004.1| - 0.66 10.4 2.9 11 6.6 0.1 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RanBP PF00641.13 gi|119720509|ref|YP_921004.1| - 0.69 9.0 4.6 7.5 5.7 0.2 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others TF_Zn_Ribbon PF08271.7 gi|119720509|ref|YP_921004.1| - 1.1 8.6 7.1 3 7.2 0.3 2.5 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|119720509|ref|YP_921004.1| - 1.8 8.1 6.7 4.2 6.9 3.0 2.5 2 1 1 3 3 3 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|119720509|ref|YP_921004.1| - 4.4 6.8 6.5 17 5.0 0.3 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif ADK_lid PF05191.9 gi|119720509|ref|YP_921004.1| - 6.8 6.4 7.5 29 4.4 5.2 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid HMA PF00403.21 gi|119720510|ref|YP_921005.1| - 1e-05 25.5 0.1 1.7e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Heavy-metal-associated domain UPF0066 PF01980.11 gi|119720511|ref|YP_921006.1| - 1.5e-13 50.7 0.0 1.6e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 PIN PF01850.16 gi|119720512|ref|YP_921007.1| - 2.8e-13 50.2 0.0 3.5e-13 49.9 0.0 1.0 1 0 0 1 1 1 1 PIN domain Glycos_trans_3N PF02885.12 gi|119720512|ref|YP_921007.1| - 0.057 13.0 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family, helical bundle domain RNase_Zc3h12a PF11977.3 gi|119720512|ref|YP_921007.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain Antitoxin-MazE PF04014.13 gi|119720513|ref|YP_921008.1| - 2.4e-11 43.0 2.0 3.7e-11 42.5 1.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE AMP-binding PF00501.23 gi|119720514|ref|YP_921009.1| - 4.4e-46 157.1 0.1 7e-28 97.1 0.1 2.1 2 0 0 2 2 2 2 AMP-binding enzyme AMP-binding_C PF13193.1 gi|119720514|ref|YP_921009.1| - 1.5e-06 29.0 1.7 4.9e-06 27.4 1.2 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Lactamase_B_3 PF13483.1 gi|119720515|ref|YP_921010.1| - 5.7e-12 45.6 0.0 7.4e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|119720515|ref|YP_921010.1| - 4.8e-05 22.9 0.0 5.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AIRS_C PF02769.17 gi|119720516|ref|YP_921011.1| - 1.9e-21 76.6 0.0 2.9e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|119720516|ref|YP_921011.1| - 2.1e-18 66.3 0.1 6.7e-18 64.7 0.1 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HupF_HypC PF01455.13 gi|119720517|ref|YP_921012.1| - 1e-14 54.2 0.1 1.5e-14 53.7 0.1 1.3 1 0 0 1 1 1 1 HupF/HypC family HypD PF01924.11 gi|119720518|ref|YP_921013.1| - 1.5e-123 412.0 0.0 1.9e-123 411.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|119720518|ref|YP_921013.1| - 0.013 15.2 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 zf-RING of BARD1-type protein FGGY_N PF00370.16 gi|119720519|ref|YP_921014.1| - 1.2e-40 139.3 0.0 1.7e-40 138.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|119720519|ref|YP_921014.1| - 1.9e-33 115.7 0.0 3e-33 115.1 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|119720519|ref|YP_921014.1| - 0.028 14.2 0.0 5.7 6.8 0.1 2.4 2 1 0 2 2 2 0 Cell division protein FtsA RibD_C PF01872.12 gi|119720519|ref|YP_921014.1| - 0.16 11.5 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 RibD C-terminal domain BPD_transp_1 PF00528.17 gi|119720520|ref|YP_921015.1| - 2.1e-20 72.9 17.2 2.1e-20 72.9 11.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TMEM169 PF15052.1 gi|119720520|ref|YP_921015.1| - 1.8 8.4 9.4 0.12 12.2 2.1 2.1 2 0 0 2 2 2 0 TMEM169 protein family BPD_transp_1 PF00528.17 gi|119720521|ref|YP_921016.1| - 1.9e-25 89.4 16.1 1.9e-25 89.4 11.2 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|119720522|ref|YP_921017.1| - 7.7e-23 81.6 3.2 1e-22 81.1 2.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119720522|ref|YP_921017.1| - 4.2e-19 69.4 7.9 6.5e-19 68.7 5.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DHDPS PF00701.17 gi|119720523|ref|YP_921018.1| - 2.1e-55 187.3 0.0 2.4e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family UVR PF02151.14 gi|119720523|ref|YP_921018.1| - 0.028 13.9 0.4 0.057 12.9 0.3 1.5 1 0 0 1 1 1 0 UvrB/uvrC motif DeoRC PF00455.17 gi|119720523|ref|YP_921018.1| - 0.13 11.8 0.2 0.21 11.2 0.1 1.2 1 0 0 1 1 1 0 DeoR C terminal sensor domain HTH_10 PF04967.7 gi|119720524|ref|YP_921019.1| - 8.5e-22 76.4 0.0 1.7e-21 75.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|119720524|ref|YP_921019.1| - 0.0017 17.5 0.1 0.0069 15.6 0.1 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|119720524|ref|YP_921019.1| - 0.0018 17.6 0.4 0.016 14.5 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|119720524|ref|YP_921019.1| - 0.0029 17.2 0.0 0.054 13.1 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Mga PF05043.8 gi|119720524|ref|YP_921019.1| - 0.015 15.5 1.4 0.066 13.4 0.0 2.5 2 1 0 2 2 2 0 Mga helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|119720524|ref|YP_921019.1| - 0.027 13.9 0.4 7.3 6.1 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|119720524|ref|YP_921019.1| - 0.031 13.9 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_6 PF01418.12 gi|119720524|ref|YP_921019.1| - 0.057 13.1 0.0 7.9 6.2 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain, rpiR family FGGY_N PF00370.16 gi|119720525|ref|YP_921020.1| - 3e-51 174.1 0.0 4.4e-51 173.5 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|119720525|ref|YP_921020.1| - 1.9e-34 119.0 0.0 2.8e-34 118.4 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DUF4445 PF14574.1 gi|119720525|ref|YP_921020.1| - 0.08 11.1 0.0 0.13 10.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4445) 2-Hacid_dh_C PF02826.14 gi|119720526|ref|YP_921021.1| - 2.6e-65 218.9 0.0 3.9e-65 218.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|119720526|ref|YP_921021.1| - 1.3e-24 86.1 0.1 1.8e-24 85.6 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|119720526|ref|YP_921021.1| - 3.3e-05 23.7 0.2 8.5e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|119720526|ref|YP_921021.1| - 5.3e-05 23.1 0.5 0.00027 20.8 0.2 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|119720526|ref|YP_921021.1| - 0.012 15.8 0.2 0.23 11.7 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|119720526|ref|YP_921021.1| - 0.012 16.0 0.2 0.077 13.4 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|119720526|ref|YP_921021.1| - 0.026 13.9 0.0 0.054 12.8 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|119720526|ref|YP_921021.1| - 0.067 13.3 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ELFV_dehydrog PF00208.16 gi|119720526|ref|YP_921021.1| - 0.081 12.4 0.4 0.14 11.7 0.2 1.5 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HpcH_HpaI PF03328.9 gi|119720527|ref|YP_921022.1| - 1.3e-39 135.3 0.0 1.7e-39 135.0 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PK PF00224.16 gi|119720527|ref|YP_921022.1| - 0.059 11.9 0.0 0.084 11.4 0.0 1.2 1 0 0 1 1 1 0 Pyruvate kinase, barrel domain SBP_bac_11 PF13531.1 gi|119720528|ref|YP_921023.1| - 1.3e-08 34.7 0.0 1.9e-08 34.2 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DrsE PF02635.10 gi|119720529|ref|YP_921024.1| - 2.5e-17 63.0 0.1 2.7e-17 62.9 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|119720529|ref|YP_921024.1| - 0.014 15.1 0.0 0.022 14.5 0.0 1.2 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family DUF325 PF03804.8 gi|119720529|ref|YP_921024.1| - 0.054 13.2 0.0 0.087 12.5 0.0 1.4 1 1 0 1 1 1 0 Viral domain of unknown function Protoglobin PF11563.3 gi|119720530|ref|YP_921025.1| - 1.2e-11 44.5 0.0 2.1e-11 43.7 0.0 1.4 1 1 0 1 1 1 1 Protoglobin Glyco_hydro_38 PF01074.17 gi|119720531|ref|YP_921026.1| - 3.1e-76 256.2 0.0 4.5e-76 255.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|119720531|ref|YP_921026.1| - 8.3e-42 143.5 0.0 1e-41 143.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|119720531|ref|YP_921026.1| - 6.5e-21 74.3 0.0 1.2e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 Alpha mannosidase, middle domain BESS PF02944.15 gi|119720531|ref|YP_921026.1| - 0.17 11.4 0.0 0.61 9.6 0.0 1.9 1 0 0 1 1 1 0 BESS motif UbiA PF01040.13 gi|119720532|ref|YP_921027.1| - 2.1 7.5 16.6 2.2 7.4 11.5 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF3488 PF11992.3 gi|119720532|ref|YP_921027.1| - 4.5 5.8 9.4 5.5 5.5 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) Bax1-I PF01027.15 gi|119720532|ref|YP_921027.1| - 9 5.8 15.7 11 5.6 10.9 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 NTPase_I-T PF01931.13 gi|119720533|ref|YP_921028.1| - 4.9e-48 163.0 0.0 5.5e-48 162.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Molybdopterin PF00384.17 gi|119720534|ref|YP_921029.1| - 7.9e-48 163.2 0.0 2e-47 161.9 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|119720534|ref|YP_921029.1| - 4.3e-19 68.3 0.0 1.2e-18 66.9 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|119720534|ref|YP_921029.1| - 9.6e-05 22.1 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain RNR_N PF08343.5 gi|119720534|ref|YP_921029.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Ribonucleotide reductase N-terminal V4R PF02830.13 gi|119720535|ref|YP_921030.1| - 1.1e-07 31.6 0.0 2e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 V4R domain ACT_4 PF13291.1 gi|119720535|ref|YP_921030.1| - 0.036 14.3 0.0 0.054 13.8 0.0 1.2 1 0 0 1 1 1 0 ACT domain ACT PF01842.20 gi|119720535|ref|YP_921030.1| - 0.12 11.8 0.1 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 ACT domain Hydrolase_3 PF08282.7 gi|119720536|ref|YP_921031.1| - 7.3e-23 81.4 0.0 7.3e-13 48.6 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|119720536|ref|YP_921031.1| - 3e-05 24.2 0.9 0.00015 22.0 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|119720536|ref|YP_921031.1| - 0.00016 20.6 0.0 0.00039 19.3 0.0 1.5 2 0 0 2 2 2 1 Trehalose-phosphatase S6PP PF05116.8 gi|119720536|ref|YP_921031.1| - 0.0058 15.9 0.0 0.16 11.2 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase ABC_tran PF00005.22 gi|119720537|ref|YP_921032.1| - 1.3e-37 129.1 0.0 1.7e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119720537|ref|YP_921032.1| - 1.7e-21 76.3 0.3 2.9e-21 75.5 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119720537|ref|YP_921032.1| - 3.9e-10 40.1 0.0 2.1e-05 24.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|119720537|ref|YP_921032.1| - 3.9e-05 23.7 1.8 9.2e-05 22.5 1.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|119720537|ref|YP_921032.1| - 0.00028 20.3 0.1 0.0005 19.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|119720537|ref|YP_921032.1| - 0.00032 20.8 1.1 0.0035 17.4 0.8 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720537|ref|YP_921032.1| - 0.0054 15.9 0.0 0.039 13.1 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|119720537|ref|YP_921032.1| - 0.0061 16.7 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|119720537|ref|YP_921032.1| - 0.0084 15.9 0.2 0.045 13.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|119720537|ref|YP_921032.1| - 0.013 15.2 0.0 0.039 13.7 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|119720537|ref|YP_921032.1| - 0.016 14.4 0.0 0.033 13.3 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|119720537|ref|YP_921032.1| - 0.019 14.5 0.1 0.035 13.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|119720537|ref|YP_921032.1| - 0.019 13.8 0.1 0.029 13.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|119720537|ref|YP_921032.1| - 0.035 13.8 0.2 0.057 13.1 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|119720537|ref|YP_921032.1| - 0.044 13.2 0.0 0.089 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain T2SE PF00437.15 gi|119720537|ref|YP_921032.1| - 0.044 12.6 0.0 0.071 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|119720537|ref|YP_921032.1| - 0.047 14.0 0.0 0.052 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|119720537|ref|YP_921032.1| - 0.055 12.4 0.0 8.4 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|119720537|ref|YP_921032.1| - 0.056 14.2 0.3 0.12 13.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|119720537|ref|YP_921032.1| - 0.062 12.8 0.1 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119720537|ref|YP_921032.1| - 0.063 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|119720537|ref|YP_921032.1| - 0.064 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|119720537|ref|YP_921032.1| - 0.067 12.8 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|119720537|ref|YP_921032.1| - 0.079 12.3 0.0 0.17 11.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.7 gi|119720537|ref|YP_921032.1| - 0.09 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin APS_kinase PF01583.15 gi|119720537|ref|YP_921032.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.22 gi|119720538|ref|YP_921033.1| - 5.3e-26 91.5 0.0 7.1e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119720538|ref|YP_921033.1| - 7.8e-21 74.1 0.2 1.4e-20 73.4 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119720538|ref|YP_921033.1| - 1.1e-10 41.9 0.1 1.4e-07 31.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720538|ref|YP_921033.1| - 5.5e-08 32.3 0.1 3e-07 29.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|119720538|ref|YP_921033.1| - 0.00029 20.2 0.9 0.0038 16.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720538|ref|YP_921033.1| - 0.00052 19.4 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|119720538|ref|YP_921033.1| - 0.0008 19.5 0.3 0.005 16.9 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|119720538|ref|YP_921033.1| - 0.0019 17.7 0.9 0.87 8.9 0.1 2.2 2 1 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|119720538|ref|YP_921033.1| - 0.016 15.1 0.6 0.031 14.2 0.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|119720538|ref|YP_921033.1| - 0.05 12.5 0.0 0.065 12.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Flu_M1 PF00598.14 gi|119720538|ref|YP_921033.1| - 0.073 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Influenza Matrix protein (M1) KaiC PF06745.8 gi|119720538|ref|YP_921033.1| - 0.13 11.3 0.6 7.7 5.5 0.0 2.1 2 0 0 2 2 2 0 KaiC MobB PF03205.9 gi|119720538|ref|YP_921033.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_1 PF00528.17 gi|119720539|ref|YP_921034.1| - 8.7e-25 87.3 10.2 8.7e-25 87.3 7.0 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720540|ref|YP_921035.1| - 2.1e-37 128.4 8.7 2.1e-37 128.4 6.1 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|119720541|ref|YP_921036.1| - 2.7e-88 296.3 5.4 3.3e-88 296.0 3.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.7 gi|119720541|ref|YP_921036.1| - 0.017 14.5 0.0 0.099 11.9 0.0 2.0 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system MFS_1 PF07690.11 gi|119720542|ref|YP_921037.1| - 2.5e-14 52.7 41.1 5.3e-14 51.7 26.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|119720542|ref|YP_921037.1| - 0.39 9.0 20.5 0.46 8.8 5.5 2.3 1 1 1 2 2 2 0 MFS/sugar transport protein AA_permease_2 PF13520.1 gi|119720543|ref|YP_921038.1| - 2.5e-58 197.6 39.4 3.8e-58 197.0 27.3 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|119720543|ref|YP_921038.1| - 1.5e-39 135.6 36.7 2.3e-39 135.0 25.4 1.3 1 0 0 1 1 1 1 Amino acid permease MFS_1 PF07690.11 gi|119720544|ref|YP_921039.1| - 4.2e-52 177.0 81.1 5.7e-40 137.1 39.0 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|119720544|ref|YP_921039.1| - 2.3e-10 39.6 11.9 2.3e-10 39.6 8.3 2.5 3 0 0 3 3 3 2 Sugar (and other) transporter MarC PF01914.12 gi|119720545|ref|YP_921040.1| - 1.8e-38 131.6 12.3 2.2e-38 131.4 8.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein Keratin_assoc PF09775.4 gi|119720545|ref|YP_921040.1| - 9.9 5.7 8.9 0.92 9.0 0.7 2.7 1 1 3 4 4 4 0 Keratinocyte-associated protein 2 Acetyltransf_1 PF00583.19 gi|119720547|ref|YP_921042.1| - 2.9e-16 59.2 0.2 7.3e-16 57.9 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|119720547|ref|YP_921042.1| - 3.5e-13 49.5 0.1 4.2e-12 46.0 0.0 2.3 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|119720547|ref|YP_921042.1| - 7.5e-11 42.1 0.2 5.3e-10 39.4 0.1 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|119720547|ref|YP_921042.1| - 4.3e-05 23.4 0.0 0.00032 20.5 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|119720547|ref|YP_921042.1| - 0.00017 21.5 0.1 0.00037 20.4 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|119720547|ref|YP_921042.1| - 0.0019 17.9 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|119720547|ref|YP_921042.1| - 0.0021 18.0 0.0 0.0068 16.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|119720547|ref|YP_921042.1| - 0.0062 16.3 0.0 0.022 14.6 0.0 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain TatC PF00902.13 gi|119720548|ref|YP_921043.1| - 2.3e-45 154.6 19.6 2.9e-45 154.3 13.6 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DNA_primase_S PF01896.14 gi|119720549|ref|YP_921044.1| - 0.04 13.7 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase small subunit YjeF_N PF03853.10 gi|119720550|ref|YP_921045.1| - 9.2e-52 175.0 0.3 1.5e-51 174.4 0.2 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus Carb_kinase PF01256.12 gi|119720550|ref|YP_921045.1| - 1.4e-48 165.2 3.5 3.6e-48 163.9 0.2 2.0 2 0 0 2 2 2 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|119720550|ref|YP_921045.1| - 3.6e-06 26.3 0.0 6.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.10 gi|119720550|ref|YP_921045.1| - 0.00033 19.9 0.1 0.0006 19.0 0.1 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family PfkB PF00294.19 gi|119720550|ref|YP_921045.1| - 0.028 13.5 1.9 0.046 12.8 0.1 1.9 2 0 0 2 2 2 0 pfkB family carbohydrate kinase DeoC PF01791.4 gi|119720551|ref|YP_921046.1| - 9.5e-32 110.1 0.0 1.1e-31 109.9 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|119720551|ref|YP_921046.1| - 0.027 13.5 0.2 0.047 12.7 0.1 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG OMPdecase PF00215.19 gi|119720551|ref|YP_921046.1| - 0.029 13.7 0.1 0.042 13.2 0.0 1.5 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PfkB PF00294.19 gi|119720552|ref|YP_921047.1| - 5.2e-58 196.5 0.4 6.6e-58 196.2 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|119720552|ref|YP_921047.1| - 3.5e-07 29.6 0.0 5.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DUF204 PF02659.10 gi|119720552|ref|YP_921047.1| - 0.024 14.7 0.3 0.06 13.4 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF VIT1 PF01988.14 gi|119720553|ref|YP_921048.1| - 4.8e-18 65.4 26.0 2.7e-11 43.3 8.3 2.9 2 1 1 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|119720553|ref|YP_921048.1| - 4.9e-06 26.9 4.4 0.0091 16.3 0.2 2.3 2 0 0 2 2 2 2 Rubrerythrin Ferritin_2 PF13668.1 gi|119720553|ref|YP_921048.1| - 0.0016 18.3 0.4 2 8.3 0.2 2.6 2 1 0 2 2 2 2 Ferritin-like domain COQ7 PF03232.8 gi|119720553|ref|YP_921048.1| - 0.072 12.5 0.0 2.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 DUF1129 PF06570.6 gi|119720553|ref|YP_921048.1| - 0.099 11.9 3.5 0.19 11.0 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) 3-alpha PF03475.9 gi|119720553|ref|YP_921048.1| - 0.76 9.5 0.0 0.76 9.5 0.0 2.7 3 0 0 3 3 3 0 3-alpha domain DUF4190 PF13828.1 gi|119720553|ref|YP_921048.1| - 4.7 6.8 11.4 0.047 13.2 1.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4190) CxxCxxCC PF03692.10 gi|119720554|ref|YP_921049.1| - 8.5e-17 61.4 1.3 1.1e-16 60.9 0.9 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain PMBR PF09373.5 gi|119720554|ref|YP_921049.1| - 0.044 13.7 0.1 0.14 12.1 0.0 1.9 2 0 0 2 2 2 0 Pseudomurein-binding repeat Nitroreductase PF00881.19 gi|119720555|ref|YP_921050.1| - 2.6e-30 105.3 0.0 3.4e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family MFS_1 PF07690.11 gi|119720556|ref|YP_921051.1| - 2e-42 145.1 27.0 3.4e-25 88.5 2.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.3 gi|119720556|ref|YP_921051.1| - 1.2e-14 53.6 14.5 1.3e-08 33.8 0.0 2.1 1 1 1 2 2 2 2 Vacuole effluxer Atg22 like MFS_3 PF05977.8 gi|119720556|ref|YP_921051.1| - 1.7e-08 33.0 13.0 4.7e-08 31.5 9.0 1.8 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|119720556|ref|YP_921051.1| - 3.6e-08 32.2 16.3 1.8e-07 29.9 11.3 2.1 1 1 0 1 1 1 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|119720556|ref|YP_921051.1| - 7e-08 31.4 16.4 0.00036 19.2 0.5 3.2 1 1 1 3 3 3 2 Sugar (and other) transporter LacY_symp PF01306.14 gi|119720556|ref|YP_921051.1| - 7.2e-07 28.1 0.2 7.2e-07 28.1 0.1 3.0 1 1 2 3 3 3 1 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|119720556|ref|YP_921051.1| - 0.0037 17.0 1.5 0.88 9.4 0.0 3.7 3 2 0 3 3 3 1 MFS_1 like family PTR2 PF00854.16 gi|119720556|ref|YP_921051.1| - 0.11 11.2 5.3 0.15 10.8 0.8 2.2 2 0 0 2 2 2 0 POT family Transgly_assoc PF04226.8 gi|119720556|ref|YP_921051.1| - 2.3 8.3 11.2 0.28 11.3 2.9 2.8 2 0 0 2 2 2 0 Transglycosylase associated protein DUF2592 PF10766.4 gi|119720556|ref|YP_921051.1| - 2.9 7.3 5.9 0.49 9.7 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2592) Fucose_iso_C PF02952.12 gi|119720557|ref|YP_921052.1| - 6.7e-11 41.8 0.0 2e-09 37.0 0.0 2.2 2 0 0 2 2 2 1 L-fucose isomerase, C-terminal domain HAD PF12710.2 gi|119720557|ref|YP_921052.1| - 0.089 12.9 0.0 0.39 10.8 0.0 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Arabinose_Isome PF02610.10 gi|119720557|ref|YP_921052.1| - 0.094 11.6 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 L-arabinose isomerase AP_endonuc_2 PF01261.19 gi|119720557|ref|YP_921052.1| - 0.11 11.8 0.8 0.37 10.0 0.3 2.0 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Flt3_lig PF02947.9 gi|119720557|ref|YP_921052.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 flt3 ligand Rubrerythrin PF02915.12 gi|119720558|ref|YP_921053.1| - 9.4e-09 35.7 0.2 1.1e-08 35.4 0.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2202 PF09968.4 gi|119720558|ref|YP_921053.1| - 0.001 18.7 0.0 0.0012 18.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) HTH_20 PF12840.2 gi|119720558|ref|YP_921053.1| - 0.0011 18.7 0.1 0.041 13.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2383 PF09537.5 gi|119720558|ref|YP_921053.1| - 0.0046 17.1 0.1 0.0057 16.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|119720558|ref|YP_921053.1| - 0.089 12.5 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like domain DUF3066 PF11266.3 gi|119720558|ref|YP_921053.1| - 0.098 12.3 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3066) Mn_catalase PF05067.7 gi|119720558|ref|YP_921053.1| - 0.12 11.1 0.1 0.13 10.9 0.1 1.1 1 0 0 1 1 1 0 Manganese containing catalase NUDIX PF00293.23 gi|119720559|ref|YP_921054.1| - 2.4e-23 82.2 0.0 2.9e-23 81.9 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|119720559|ref|YP_921054.1| - 0.00082 18.7 0.0 0.0014 17.9 0.0 1.5 1 1 0 1 1 1 1 NUDIX domain Rhomboid PF01694.17 gi|119720561|ref|YP_921056.1| - 1.3e-32 112.8 17.8 1.3e-32 112.8 12.3 1.9 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|119720561|ref|YP_921056.1| - 0.0084 16.4 0.4 0.0084 16.4 0.3 2.5 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) DER1 PF04511.10 gi|119720561|ref|YP_921056.1| - 0.015 14.8 5.8 0.033 13.6 4.0 1.6 1 1 0 1 1 1 0 Der1-like family tRNA-synt_1b PF00579.20 gi|119720562|ref|YP_921057.1| - 5.8e-33 114.2 0.0 1.5e-20 73.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) NAD_binding_5 PF07994.7 gi|119720563|ref|YP_921058.1| - 6.8e-25 88.1 0.0 4.2e-24 85.5 0.0 1.9 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|119720563|ref|YP_921058.1| - 2.9e-24 85.0 0.0 4.5e-24 84.4 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase DUF2192 PF09958.4 gi|119720564|ref|YP_921059.1| - 7.8e-65 218.3 0.0 1.2e-64 217.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Cyclase PF04199.8 gi|119720566|ref|YP_921061.1| - 1e-40 139.1 0.0 1.2e-40 138.9 0.0 1.0 1 0 0 1 1 1 1 Putative cyclase Aminotran_1_2 PF00155.16 gi|119720567|ref|YP_921062.1| - 2.7e-67 227.2 0.0 3e-67 227.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|119720567|ref|YP_921062.1| - 2.8e-08 33.2 0.0 4.2e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|119720567|ref|YP_921062.1| - 0.00051 19.2 0.0 0.00073 18.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|119720567|ref|YP_921062.1| - 0.0012 17.2 0.0 0.0018 16.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Radical_SAM PF04055.16 gi|119720567|ref|YP_921062.1| - 0.0086 16.2 0.0 0.17 12.0 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily HHH PF00633.18 gi|119720567|ref|YP_921062.1| - 0.051 13.2 0.0 0.2 11.3 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|119720567|ref|YP_921062.1| - 0.063 13.4 0.1 0.48 10.6 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain RNase_Zc3h12a PF11977.3 gi|119720567|ref|YP_921062.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain PqqD PF05402.7 gi|119720567|ref|YP_921062.1| - 0.22 11.5 0.8 16 5.6 0.0 3.4 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) DUF1097 PF06496.6 gi|119720568|ref|YP_921063.1| - 1.2e-14 54.3 13.3 1.5e-14 54.0 9.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1097) DHDPS PF00701.17 gi|119720569|ref|YP_921064.1| - 2.6e-70 236.3 0.0 2.9e-70 236.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AIRS_C PF02769.17 gi|119720570|ref|YP_921065.1| - 1.2e-28 100.0 1.5 2.3e-28 99.1 1.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|119720570|ref|YP_921065.1| - 7.3e-10 38.9 0.4 1.7e-09 37.8 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ECF-ribofla_trS PF07155.7 gi|119720571|ref|YP_921066.1| - 2.5e-45 154.2 12.6 3.1e-45 153.9 8.8 1.0 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|119720571|ref|YP_921066.1| - 1e-07 32.0 13.0 2.8e-07 30.5 9.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) 5TM-5TMR_LYT PF07694.7 gi|119720571|ref|YP_921066.1| - 0.0025 17.1 10.9 0.0042 16.4 7.6 1.4 1 1 0 1 1 1 1 5TMR of 5TMR-LYT Thia_YuaJ PF09515.5 gi|119720571|ref|YP_921066.1| - 0.13 12.0 11.2 0.42 10.3 2.6 2.2 2 1 0 2 2 2 0 Thiamine transporter protein (Thia_YuaJ) YbjM PF11045.3 gi|119720571|ref|YP_921066.1| - 0.63 9.8 3.0 0.46 10.2 0.8 1.7 1 1 1 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae PetG PF02529.10 gi|119720571|ref|YP_921066.1| - 0.96 9.0 3.9 3.6 7.2 0.8 2.8 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 Acid_PPase PF12689.2 gi|119720572|ref|YP_921067.1| - 2.9e-13 49.8 0.0 3.4e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.1 gi|119720572|ref|YP_921067.1| - 9.2e-11 42.2 0.0 9.4e-10 38.9 0.0 2.0 1 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|119720572|ref|YP_921067.1| - 6.7e-10 39.7 0.0 3.7e-07 30.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|119720572|ref|YP_921067.1| - 2.8e-07 30.3 0.0 3.2e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.1 gi|119720572|ref|YP_921067.1| - 0.0044 16.8 0.0 0.011 15.6 0.0 1.8 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.3 gi|119720572|ref|YP_921067.1| - 0.009 15.0 0.0 0.019 13.9 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF2608) ETF PF01012.16 gi|119720572|ref|YP_921067.1| - 0.057 13.1 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Polysacc_synt_4 PF04669.8 gi|119720572|ref|YP_921067.1| - 0.074 12.4 0.0 0.097 12.0 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis Response_reg PF00072.19 gi|119720572|ref|YP_921067.1| - 0.12 12.3 0.0 0.76 9.7 0.0 1.9 1 1 1 2 2 2 0 Response regulator receiver domain HAD PF12710.2 gi|119720572|ref|YP_921067.1| - 0.14 12.3 0.1 2.7 8.1 0.0 2.2 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Methyltransf_24 PF13578.1 gi|119720572|ref|YP_921067.1| - 0.15 12.9 0.0 0.21 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Hydrolase_3 PF08282.7 gi|119720572|ref|YP_921067.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF3227 PF11537.3 gi|119720572|ref|YP_921067.1| - 0.16 12.0 0.1 1 9.5 0.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3227) Aldo_ket_red PF00248.16 gi|119720573|ref|YP_921068.1| - 1e-64 218.1 0.0 1.1e-64 217.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Ribul_P_3_epim PF00834.14 gi|119720573|ref|YP_921068.1| - 0.01 14.9 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Cellulase PF00150.13 gi|119720575|ref|YP_921070.1| - 6.1e-07 28.9 0.0 1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42 PF02449.10 gi|119720575|ref|YP_921070.1| - 2.1e-06 27.1 0.1 0.035 13.2 0.1 2.3 2 0 0 2 2 2 2 Beta-galactosidase DUF4434 PF14488.1 gi|119720575|ref|YP_921070.1| - 2.2e-06 27.4 0.0 6.2e-06 26.0 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4434) Glyco_hydro_42C PF08533.5 gi|119720575|ref|YP_921070.1| - 0.00055 19.3 0.2 0.0018 17.7 0.0 1.9 2 0 0 2 2 2 1 Beta-galactosidase C-terminal domain Cellulase-like PF12876.2 gi|119720575|ref|YP_921070.1| - 0.0034 17.8 0.0 0.088 13.2 0.0 2.7 2 0 0 2 2 2 1 Sugar-binding cellulase-like Lact_bio_phlase PF09508.5 gi|119720575|ref|YP_921070.1| - 0.0093 13.6 0.0 0.014 13.1 0.0 1.2 1 0 0 1 1 1 1 Lacto-N-biose phosphorylase Glyco_hydro_72 PF03198.9 gi|119720575|ref|YP_921070.1| - 0.089 11.7 0.0 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Glucanosyltransferase PEPCK_ATP PF01293.15 gi|119720575|ref|YP_921070.1| - 0.12 10.8 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase RHH_1 PF01402.16 gi|119720577|ref|YP_921072.1| - 4.8e-05 23.0 0.1 0.00011 21.8 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF217 PF02697.9 gi|119720577|ref|YP_921072.1| - 0.00015 21.9 0.1 0.00017 21.7 0.1 1.2 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 FIBP PF05427.6 gi|119720577|ref|YP_921072.1| - 0.039 13.1 0.1 0.039 13.1 0.1 1.0 1 0 0 1 1 1 0 Acidic fibroblast growth factor binding (FIBP) TPD52 PF04201.10 gi|119720577|ref|YP_921072.1| - 0.055 13.2 0.1 0.056 13.1 0.0 1.2 1 0 0 1 1 1 0 Tumour protein D52 family FAM74 PF15026.1 gi|119720577|ref|YP_921072.1| - 0.083 12.5 0.3 0.095 12.3 0.2 1.1 1 0 0 1 1 1 0 FAM74 protein Glyco_hydro_1 PF00232.13 gi|119720578|ref|YP_921073.1| - 1.1e-55 188.6 0.1 1.7e-43 148.4 0.0 2.7 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 SBP_bac_5 PF00496.17 gi|119720579|ref|YP_921074.1| - 2.9e-67 227.1 8.5 4.6e-67 226.4 5.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Herpes_gE PF02480.11 gi|119720579|ref|YP_921074.1| - 0.14 10.4 0.6 0.19 9.9 0.4 1.1 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E DUF4366 PF14283.1 gi|119720579|ref|YP_921074.1| - 0.2 11.0 0.0 0.3 10.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) BPD_transp_1 PF00528.17 gi|119720580|ref|YP_921075.1| - 2.1e-39 134.9 8.2 2.1e-39 134.9 5.7 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|119720581|ref|YP_921076.1| - 1.4e-22 80.0 19.3 1.4e-22 80.0 13.4 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|119720581|ref|YP_921076.1| - 7.7e-05 21.9 0.1 7.7e-05 21.9 0.1 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF4014 PF13198.1 gi|119720581|ref|YP_921076.1| - 0.14 12.6 2.5 1 9.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4014) ABC_tran PF00005.22 gi|119720582|ref|YP_921077.1| - 9.5e-24 84.2 0.0 1.3e-23 83.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119720582|ref|YP_921077.1| - 6.5e-19 68.0 0.2 1.2e-18 67.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119720582|ref|YP_921077.1| - 1.1e-05 25.6 2.2 0.066 13.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|119720582|ref|YP_921077.1| - 3.5e-05 23.2 0.0 7.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|119720582|ref|YP_921077.1| - 0.00019 20.6 0.0 0.00034 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|119720582|ref|YP_921077.1| - 0.00057 20.0 0.1 0.0039 17.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|119720582|ref|YP_921077.1| - 0.00099 19.0 0.3 0.0016 18.3 0.2 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.9 gi|119720582|ref|YP_921077.1| - 0.003 17.2 0.0 0.007 16.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|119720582|ref|YP_921077.1| - 0.0047 16.9 0.2 0.0092 15.9 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|119720582|ref|YP_921077.1| - 0.009 16.8 0.0 0.014 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720582|ref|YP_921077.1| - 0.0092 15.2 0.2 0.74 9.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|119720582|ref|YP_921077.1| - 0.01 15.3 0.2 0.02 14.3 0.2 1.4 1 0 0 1 1 1 0 AAA-like domain Miro PF08477.8 gi|119720582|ref|YP_921077.1| - 0.011 16.1 0.1 0.034 14.6 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|119720582|ref|YP_921077.1| - 0.02 14.3 0.1 0.045 13.2 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|119720582|ref|YP_921077.1| - 0.023 14.3 0.1 0.062 12.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Dynamin_N PF00350.18 gi|119720582|ref|YP_921077.1| - 0.025 14.3 0.1 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.1 gi|119720582|ref|YP_921077.1| - 0.031 14.6 0.1 0.056 13.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|119720582|ref|YP_921077.1| - 0.032 14.1 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|119720582|ref|YP_921077.1| - 0.032 13.1 0.0 0.046 12.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Septin PF00735.13 gi|119720582|ref|YP_921077.1| - 0.033 13.1 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Septin cobW PF02492.14 gi|119720582|ref|YP_921077.1| - 0.067 12.6 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|119720582|ref|YP_921077.1| - 0.067 11.7 2.4 0.68 8.4 0.1 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_18 PF13238.1 gi|119720582|ref|YP_921077.1| - 0.072 13.4 0.1 0.14 12.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|119720582|ref|YP_921077.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|119720582|ref|YP_921077.1| - 0.11 11.5 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain DUF2805 PF10985.3 gi|119720582|ref|YP_921077.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) ABC_tran PF00005.22 gi|119720583|ref|YP_921078.1| - 3.9e-31 108.1 0.0 5.9e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|119720583|ref|YP_921078.1| - 9.5e-14 51.4 0.1 1.7e-13 50.6 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|119720583|ref|YP_921078.1| - 3.2e-06 27.3 0.6 0.0084 16.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|119720583|ref|YP_921078.1| - 2.2e-05 24.6 0.1 0.00013 22.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|119720583|ref|YP_921078.1| - 6.6e-05 22.3 0.0 0.00013 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|119720583|ref|YP_921078.1| - 0.00081 19.0 0.0 0.0021 17.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain MobB PF03205.9 gi|119720583|ref|YP_921078.1| - 0.0017 18.0 0.0 0.0031 17.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|119720583|ref|YP_921078.1| - 0.0019 17.4 0.0 0.0053 16.0 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|119720583|ref|YP_921078.1| - 0.002 18.1 0.0 0.0031 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|119720583|ref|YP_921078.1| - 0.0023 18.2 0.0 0.0043 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain PRK PF00485.13 gi|119720583|ref|YP_921078.1| - 0.0031 17.0 0.0 0.0047 16.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.1 gi|119720583|ref|YP_921078.1| - 0.0037 17.6 0.0 0.0053 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|119720583|ref|YP_921078.1| - 0.0068 15.5 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|119720583|ref|YP_921078.1| - 0.0093 15.4 0.0 0.17 11.3 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain UPF0079 PF02367.12 gi|119720583|ref|YP_921078.1| - 0.0097 15.5 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|119720583|ref|YP_921078.1| - 0.016 14.6 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|119720583|ref|YP_921078.1| - 0.02 14.1 0.1 0.046 12.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|119720583|ref|YP_921078.1| - 0.026 15.3 0.2 0.049 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|119720583|ref|YP_921078.1| - 0.033 13.2 0.0 0.059 12.4 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|119720583|ref|YP_921078.1| - 0.035 13.8 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.15 gi|119720583|ref|YP_921078.1| - 0.035 12.7 0.0 0.051 12.2 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.24 gi|119720583|ref|YP_921078.1| - 0.036 14.2 0.0 0.061 13.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|119720583|ref|YP_921078.1| - 0.049 13.8 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|119720583|ref|YP_921078.1| - 0.056 12.2 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|119720583|ref|YP_921078.1| - 0.058 12.2 0.1 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF87 PF01935.12 gi|119720583|ref|YP_921078.1| - 0.059 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 TIP49 PF06068.8 gi|119720583|ref|YP_921078.1| - 0.084 11.5 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus Gtr1_RagA PF04670.7 gi|119720583|ref|YP_921078.1| - 0.1 11.7 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region NACHT PF05729.7 gi|119720583|ref|YP_921078.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.17 gi|119720583|ref|YP_921078.1| - 0.12 11.7 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.1 gi|119720583|ref|YP_921078.1| - 0.21 10.0 0.0 4.6 5.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Glyco_hydro_12 PF01670.11 gi|119720584|ref|YP_921079.1| - 4.4e-22 78.5 0.0 6.7e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 HEPN PF05168.9 gi|119720585|ref|YP_921080.1| - 2.6e-10 40.2 2.4 4.5e-10 39.4 1.7 1.4 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|119720585|ref|YP_921080.1| - 0.038 13.8 0.7 0.08 12.8 0.5 1.7 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family MFS_1 PF07690.11 gi|119720586|ref|YP_921081.1| - 1.3e-38 132.6 51.0 1.8e-26 92.7 21.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|119720586|ref|YP_921081.1| - 5.1e-36 124.2 16.2 8.6e-36 123.4 11.2 1.3 1 1 0 1 1 1 1 Sugar (and other) transporter ATG22 PF11700.3 gi|119720586|ref|YP_921081.1| - 0.4 9.0 20.9 0.012 14.1 5.3 2.3 2 0 0 2 2 2 0 Vacuole effluxer Atg22 like OATP PF03137.15 gi|119720586|ref|YP_921081.1| - 4.1 5.3 4.9 0.63 8.0 0.4 1.8 2 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Cation_efflux PF01545.16 gi|119720587|ref|YP_921082.1| - 1.7e-70 237.3 11.8 7.5e-57 192.5 2.2 3.0 1 1 2 3 3 3 3 Cation efflux family AHS1 PF02682.11 gi|119720587|ref|YP_921082.1| - 0.013 15.0 0.0 0.029 13.8 0.0 1.7 1 0 0 1 1 1 0 Allophanate hydrolase subunit 1 TIR_2 PF13676.1 gi|119720587|ref|YP_921082.1| - 0.04 14.0 0.2 2.8 8.1 0.1 3.1 2 1 1 3 3 3 0 TIR domain AMP-binding_C_2 PF14535.1 gi|119720587|ref|YP_921082.1| - 0.058 13.4 5.7 0.32 11.0 0.7 2.7 2 1 1 3 3 3 0 AMP-binding enzyme C-terminal domain FtsZ_C PF12327.3 gi|119720587|ref|YP_921082.1| - 0.1 12.6 1.5 6.9 6.8 0.2 2.8 1 1 1 2 2 2 0 FtsZ family, C-terminal domain DUF59 PF01883.14 gi|119720587|ref|YP_921082.1| - 9.4 6.3 8.9 8.4 6.4 0.3 3.2 2 1 1 3 3 3 0 Domain of unknown function DUF59 OmpH PF03938.9 gi|119720588|ref|YP_921083.1| - 8.6e-05 22.5 12.1 0.72 9.7 2.3 4.1 1 1 1 2 2 2 2 Outer membrane protein (OmpH-like) DUF3584 PF12128.3 gi|119720588|ref|YP_921083.1| - 0.00031 18.2 17.5 0.00047 17.6 12.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF234 PF03008.9 gi|119720588|ref|YP_921083.1| - 0.0017 18.4 0.0 0.0045 17.0 0.0 1.8 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function CCDC144C PF14915.1 gi|119720588|ref|YP_921083.1| - 0.0072 15.2 9.6 0.0072 15.2 6.7 3.1 1 1 1 2 2 2 1 CCDC144C protein coiled-coil region Ded_cyto PF06920.8 gi|119720588|ref|YP_921083.1| - 0.0076 15.5 16.4 0.61 9.3 1.2 3.6 2 1 0 3 3 3 3 Dedicator of cytokinesis TPR_MLP1_2 PF07926.7 gi|119720588|ref|YP_921083.1| - 0.0082 15.8 21.9 0.15 11.8 2.7 4.5 2 1 2 4 4 4 2 TPR/MLP1/MLP2-like protein DUF1910 PF08928.5 gi|119720588|ref|YP_921083.1| - 0.061 13.3 10.8 3.6 7.6 0.2 3.6 1 1 0 3 3 3 0 Domain of unknown function (DUF1910) FadA PF09403.5 gi|119720588|ref|YP_921083.1| - 0.067 13.2 23.6 0.46 10.4 1.8 3.7 1 1 1 3 3 3 0 Adhesion protein FadA IATP PF04568.7 gi|119720588|ref|YP_921083.1| - 0.088 12.8 40.1 0.4 10.7 0.4 6.6 2 1 5 8 8 8 0 Mitochondrial ATPase inhibitor, IATP Bacillus_HBL PF05791.6 gi|119720588|ref|YP_921083.1| - 0.47 9.8 6.5 11 5.2 0.1 3.2 2 1 0 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF413 PF04219.7 gi|119720588|ref|YP_921083.1| - 0.54 10.0 4.3 24 4.7 0.0 3.6 3 1 1 4 4 4 0 Protein of unknown function, DUF DUF2884 PF11101.3 gi|119720588|ref|YP_921083.1| - 0.86 8.9 12.3 1.7 7.9 0.3 3.5 1 1 2 4 4 4 0 Protein of unknown function (DUF2884) MutS_III PF05192.13 gi|119720588|ref|YP_921083.1| - 1.3 8.8 13.4 48 3.6 0.0 3.3 2 1 0 2 2 2 0 MutS domain III Fib_alpha PF08702.5 gi|119720588|ref|YP_921083.1| - 1.5 8.8 7.2 2.8 8.0 0.5 2.9 2 1 0 3 3 2 0 Fibrinogen alpha/beta chain family ApoLp-III PF07464.6 gi|119720588|ref|YP_921083.1| - 2.2 8.3 14.0 7.5 6.5 1.9 3.5 1 1 2 3 3 3 0 Apolipophorin-III precursor (apoLp-III) NTP_transf_4 PF13562.1 gi|119720588|ref|YP_921083.1| - 2.2 7.9 8.7 22 4.6 0.1 4.0 3 1 1 4 4 4 0 Sugar nucleotidyl transferase Nucleic_acid_bd PF13820.1 gi|119720588|ref|YP_921083.1| - 2.2 7.8 4.2 1.8 8.1 0.0 2.7 3 1 0 3 3 3 0 Putative nucleic acid-binding region DUF2746 PF10874.3 gi|119720588|ref|YP_921083.1| - 2.8 8.2 41.7 2 8.6 1.4 7.1 5 2 1 7 7 7 0 Protein of unknown function (DUF2746) Exonuc_VII_L PF02601.10 gi|119720588|ref|YP_921083.1| - 3.6 6.7 15.3 58 2.7 10.6 2.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF1043 PF06295.7 gi|119720588|ref|YP_921083.1| - 4.4 6.9 20.4 11 5.6 0.4 5.0 2 1 4 6 6 6 0 Protein of unknown function (DUF1043) Phage_GPO PF05929.6 gi|119720588|ref|YP_921083.1| - 4.7 6.3 16.3 0.86 8.7 2.8 2.9 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4407 PF14362.1 gi|119720588|ref|YP_921083.1| - 4.8 6.0 8.6 32 3.3 5.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) IFT57 PF10498.4 gi|119720588|ref|YP_921083.1| - 8.5 5.0 14.3 0.88 8.2 4.0 2.1 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 TBPIP PF07106.8 gi|119720588|ref|YP_921083.1| - 9.3 5.7 21.3 0.86 9.1 1.2 4.2 2 1 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|119720588|ref|YP_921083.1| - 9.8 4.4 17.8 1.5e+04 -6.1 12.4 3.0 1 1 0 1 1 0 0 Protein of unknown function (DUF342) NTP_transf_2 PF01909.18 gi|119720589|ref|YP_921084.1| - 6.7e-10 39.1 0.2 8.9e-10 38.7 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain ETF PF01012.16 gi|119720589|ref|YP_921084.1| - 0.057 13.1 0.1 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 Electron transfer flavoprotein domain DNA_pol_B_palm PF14792.1 gi|119720589|ref|YP_921084.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.9 gi|119720590|ref|YP_921085.1| - 5.9e-36 122.9 0.0 6.9e-36 122.7 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|119720590|ref|YP_921085.1| - 0.00028 20.7 0.1 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.1 gi|119720590|ref|YP_921085.1| - 0.019 15.0 0.5 0.21 11.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) HEPN PF05168.9 gi|119720591|ref|YP_921086.1| - 1.9e-16 59.9 1.4 2.7e-16 59.5 1.0 1.2 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|119720592|ref|YP_921087.1| - 4.5e-07 30.0 0.0 5.9e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.9 gi|119720593|ref|YP_921088.1| - 2.2e-30 104.9 2.7 2.5e-30 104.7 1.9 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|119720593|ref|YP_921088.1| - 0.0056 16.5 1.1 0.0056 16.5 0.8 1.8 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|119720594|ref|YP_921089.1| - 2.4e-13 50.2 1.0 3.2e-13 49.8 0.7 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|119720594|ref|YP_921089.1| - 0.054 12.8 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Predicted nucleotidyltransferase DUF294 PF03445.8 gi|119720594|ref|YP_921089.1| - 0.092 12.3 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 NTP_transf_2 PF01909.18 gi|119720595|ref|YP_921090.1| - 2.8e-06 27.5 0.2 4.2e-06 27.0 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|119720596|ref|YP_921091.1| - 1.5e-17 63.3 0.0 1.7e-17 63.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF1320 PF07030.7 gi|119720596|ref|YP_921091.1| - 0.042 13.5 0.1 0.068 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1320) PIN PF01850.16 gi|119720597|ref|YP_921092.1| - 1.8e-12 47.6 0.7 2.5e-12 47.1 0.5 1.2 1 0 0 1 1 1 1 PIN domain RHH_1 PF01402.16 gi|119720598|ref|YP_921093.1| - 0.00035 20.3 0.9 0.0016 18.2 0.4 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PqqD PF05402.7 gi|119720598|ref|YP_921093.1| - 0.072 13.1 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) B12-binding_2 PF02607.12 gi|119720598|ref|YP_921093.1| - 0.12 12.3 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 2 0 B12 binding domain PaREP1 PF05942.6 gi|119720599|ref|YP_921094.1| - 2.6e-32 111.0 4.8 3.4e-32 110.7 3.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family FtsK_SpoIIIE PF01580.13 gi|119720599|ref|YP_921094.1| - 0.0095 15.4 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family HEPN PF05168.9 gi|119720599|ref|YP_921094.1| - 0.066 13.0 2.2 0.44 10.4 1.5 2.1 1 1 0 1 1 1 0 HEPN domain DUF4398 PF14346.1 gi|119720599|ref|YP_921094.1| - 0.93 9.5 4.3 0.61 10.1 0.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) NTP_transf_2 PF01909.18 gi|119720600|ref|YP_921095.1| - 1.8e-14 53.8 0.1 1.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain BolA PF01722.13 gi|119720600|ref|YP_921095.1| - 0.0076 16.1 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 BolA-like protein HEPN PF05168.9 gi|119720601|ref|YP_921096.1| - 3.4e-27 94.6 0.0 4e-27 94.4 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|119720601|ref|YP_921096.1| - 0.037 14.0 1.3 0.094 12.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) MIT PF04212.13 gi|119720601|ref|YP_921096.1| - 0.041 13.7 0.2 0.089 12.6 0.2 1.6 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain DUF4129 PF13559.1 gi|119720601|ref|YP_921096.1| - 4.5 7.3 8.0 2.7 8.0 3.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4129) PaREP1 PF05942.6 gi|119720602|ref|YP_921097.1| - 1.7e-09 37.5 1.7 3e-09 36.7 1.2 1.4 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|119720602|ref|YP_921097.1| - 1.2e-05 25.1 4.4 2.5e-05 24.1 3.1 1.4 1 1 0 1 1 1 1 HEPN domain DUF4391 PF14335.1 gi|119720602|ref|YP_921097.1| - 0.052 12.9 0.8 0.062 12.6 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) Fic_N PF13784.1 gi|119720602|ref|YP_921097.1| - 0.087 12.6 0.6 0.29 11.0 0.1 1.9 2 0 0 2 2 2 0 Fic/DOC family N-terminal PaREP1 PF05942.6 gi|119720603|ref|YP_921098.1| - 6.4e-26 90.4 4.8 6.4e-26 90.4 3.3 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|119720603|ref|YP_921098.1| - 0.00033 20.5 0.9 0.0011 18.8 0.6 1.8 1 1 0 1 1 1 1 HEPN domain RHH_1 PF01402.16 gi|119720603|ref|YP_921098.1| - 0.018 14.9 0.1 0.09 12.6 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family ACP_syn_III PF08545.5 gi|119720605|ref|YP_921100.1| - 0.077 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AAA_21 PF13304.1 gi|119720606|ref|YP_921101.1| - 8.7e-19 68.5 0.0 1.2e-14 55.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|119720606|ref|YP_921101.1| - 3.9e-10 39.3 0.0 1.1e-08 34.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF2813 PF11398.3 gi|119720606|ref|YP_921101.1| - 0.00055 19.1 0.0 0.046 12.7 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_23 PF13476.1 gi|119720606|ref|YP_921101.1| - 0.0036 17.6 0.0 0.0051 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720606|ref|YP_921101.1| - 0.026 13.7 0.0 3 7.0 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AP_endonuc_2 PF01261.19 gi|119720607|ref|YP_921102.1| - 0.15 11.2 0.0 0.25 10.6 0.0 1.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel MCPsignal PF00015.16 gi|119720608|ref|YP_921103.1| - 1.5e-08 34.4 2.1 1.5e-08 34.4 1.4 1.8 2 0 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1626 PF07788.6 gi|119720608|ref|YP_921103.1| - 6.7e-06 25.8 0.5 1.5e-05 24.6 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) Spc7 PF08317.6 gi|119720608|ref|YP_921103.1| - 6.4e-05 21.7 4.7 0.00014 20.6 3.1 1.7 2 0 0 2 2 2 1 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|119720608|ref|YP_921103.1| - 0.00035 19.8 0.0 0.00041 19.6 0.0 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein TMF_TATA_bd PF12325.3 gi|119720608|ref|YP_921103.1| - 0.0012 18.5 11.9 0.03 14.0 1.7 2.5 1 1 1 2 2 2 2 TATA element modulatory factor 1 TATA binding FCH PF00611.18 gi|119720608|ref|YP_921103.1| - 0.0013 18.8 4.1 0.017 15.2 2.1 2.5 1 1 1 2 2 2 1 Fes/CIP4, and EFC/F-BAR homology domain AAA_13 PF13166.1 gi|119720608|ref|YP_921103.1| - 0.0016 17.0 1.5 0.002 16.6 1.0 1.1 1 0 0 1 1 1 1 AAA domain DUF4618 PF15397.1 gi|119720608|ref|YP_921103.1| - 0.0016 17.8 3.3 0.0021 17.4 2.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) Syntaxin-6_N PF09177.6 gi|119720608|ref|YP_921103.1| - 0.0018 18.6 4.5 0.21 12.0 0.4 2.5 2 0 0 2 2 2 1 Syntaxin 6, N-terminal Orbi_VP5 PF00901.12 gi|119720608|ref|YP_921103.1| - 0.0035 15.6 5.8 0.0049 15.1 4.0 1.3 1 0 0 1 1 1 1 Orbivirus outer capsid protein VP5 DUF812 PF05667.6 gi|119720608|ref|YP_921103.1| - 0.0039 15.7 6.1 0.0047 15.5 4.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Rootletin PF15035.1 gi|119720608|ref|YP_921103.1| - 0.01 15.8 10.2 0.014 15.3 7.1 1.1 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion MutS_III PF05192.13 gi|119720608|ref|YP_921103.1| - 0.011 15.5 3.3 0.019 14.7 2.3 1.3 1 0 0 1 1 1 0 MutS domain III V_ATPase_I PF01496.14 gi|119720608|ref|YP_921103.1| - 0.014 13.3 1.4 0.016 13.1 0.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.4 gi|119720608|ref|YP_921103.1| - 0.015 15.3 2.3 0.11 12.6 0.8 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|119720608|ref|YP_921103.1| - 0.017 14.9 2.7 0.12 12.1 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Borrelia_lipo_1 PF05714.6 gi|119720608|ref|YP_921103.1| - 0.02 13.9 0.9 0.051 12.6 0.1 1.9 1 1 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein IFT57 PF10498.4 gi|119720608|ref|YP_921103.1| - 0.024 13.3 3.8 0.031 13.0 2.7 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF1487 PF07368.6 gi|119720608|ref|YP_921103.1| - 0.026 13.7 0.4 3.3 6.8 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1487) DUF2383 PF09537.5 gi|119720608|ref|YP_921103.1| - 0.034 14.3 4.5 0.27 11.4 0.5 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) DUF745 PF05335.8 gi|119720608|ref|YP_921103.1| - 0.037 13.5 6.6 0.54 9.7 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF745) DUF4559 PF15112.1 gi|119720608|ref|YP_921103.1| - 0.046 12.8 3.7 0.069 12.3 2.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) DUF342 PF03961.8 gi|119720608|ref|YP_921103.1| - 0.053 11.9 2.9 0.078 11.3 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Nsp1_C PF05064.8 gi|119720608|ref|YP_921103.1| - 0.056 13.0 0.2 0.36 10.4 0.0 2.1 1 1 2 3 3 3 0 Nsp1-like C-terminal region DUF948 PF06103.6 gi|119720608|ref|YP_921103.1| - 0.064 13.1 0.3 1.1 9.1 0.0 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.6 gi|119720608|ref|YP_921103.1| - 0.083 10.4 0.9 0.22 9.0 0.1 1.7 1 1 1 2 2 2 0 Prominin TMF_DNA_bd PF12329.3 gi|119720608|ref|YP_921103.1| - 0.083 12.7 10.1 0.49 10.2 1.5 2.5 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding Phage_GPO PF05929.6 gi|119720608|ref|YP_921103.1| - 0.092 11.9 2.8 2.5 7.2 0.5 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4200 PF13863.1 gi|119720608|ref|YP_921103.1| - 0.11 12.4 6.0 0.25 11.2 4.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) HAUS6_N PF14661.1 gi|119720608|ref|YP_921103.1| - 0.11 11.8 2.1 0.15 11.4 1.5 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus SlyX PF04102.7 gi|119720608|ref|YP_921103.1| - 0.17 12.3 3.6 9.3 6.7 0.4 3.0 1 1 2 3 3 3 0 SlyX DUF869 PF05911.6 gi|119720608|ref|YP_921103.1| - 0.18 9.9 12.3 0.27 9.4 8.6 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) TMPIT PF07851.8 gi|119720608|ref|YP_921103.1| - 0.18 10.8 4.2 0.48 9.4 2.6 1.6 1 1 1 2 2 2 0 TMPIT-like protein APG6 PF04111.7 gi|119720608|ref|YP_921103.1| - 0.21 10.6 5.0 0.29 10.1 3.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 ATG16 PF08614.6 gi|119720608|ref|YP_921103.1| - 0.21 11.3 10.6 4.8 6.9 1.2 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) ISG65-75 PF11727.3 gi|119720608|ref|YP_921103.1| - 0.22 10.5 3.7 0.34 9.9 2.5 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein GAS PF13851.1 gi|119720608|ref|YP_921103.1| - 0.24 10.5 8.9 0.97 8.5 6.1 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF919 PF06034.6 gi|119720608|ref|YP_921103.1| - 0.33 10.5 5.9 0.13 11.9 1.4 2.3 2 1 1 3 3 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Noelin-1 PF12308.3 gi|119720608|ref|YP_921103.1| - 0.37 10.5 4.9 9.6 6.0 0.1 2.5 1 1 1 2 2 2 0 Neurogenesis glycoprotein Atg14 PF10186.4 gi|119720608|ref|YP_921103.1| - 0.41 9.5 6.0 0.61 8.9 4.1 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Snapin_Pallidin PF14712.1 gi|119720608|ref|YP_921103.1| - 0.73 10.1 4.3 7 7.0 0.9 2.3 1 1 0 2 2 2 0 Snapin/Pallidin HAUS-augmin3 PF14932.1 gi|119720608|ref|YP_921103.1| - 1 8.4 5.6 1.5 7.9 3.9 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 TBPIP PF07106.8 gi|119720608|ref|YP_921103.1| - 1.8 8.1 7.0 4.1 6.9 4.7 1.7 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Cep57_MT_bd PF06657.8 gi|119720608|ref|YP_921103.1| - 2.3 8.1 10.2 6.7 6.7 1.0 3.0 1 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 CENP-Q PF13094.1 gi|119720608|ref|YP_921103.1| - 2.7 7.9 12.4 9 6.2 7.7 2.1 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Seryl_tRNA_N PF02403.17 gi|119720608|ref|YP_921103.1| - 2.8 7.9 7.6 2.1 8.4 0.9 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain OPA3 PF07047.7 gi|119720608|ref|YP_921103.1| - 2.9 7.6 6.8 4.3 7.1 0.4 2.5 2 0 0 2 2 2 0 Optic atrophy 3 protein (OPA3) AF0941-like PF14591.1 gi|119720608|ref|YP_921103.1| - 3.7 7.6 13.4 2.9 7.9 1.3 3.4 1 1 2 3 3 3 0 AF0941-like IncA PF04156.9 gi|119720608|ref|YP_921103.1| - 4.3 6.8 14.3 14 5.2 2.6 2.1 1 1 1 2 2 2 0 IncA protein Laminin_II PF06009.7 gi|119720608|ref|YP_921103.1| - 4.3 7.0 8.6 0.47 10.2 2.2 2.2 2 1 1 3 3 2 0 Laminin Domain II FimP PF09766.4 gi|119720608|ref|YP_921103.1| - 4.5 6.2 8.4 13 4.7 4.7 1.6 1 1 0 1 1 1 0 Fms-interacting protein DUF4404 PF14357.1 gi|119720608|ref|YP_921103.1| - 9.5 6.7 9.3 25 5.3 0.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4404) RVP PF00077.15 gi|119720609|ref|YP_921104.1| - 0.013 15.4 0.0 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 Retroviral aspartyl protease Asp_protease_2 PF13650.1 gi|119720609|ref|YP_921104.1| - 0.033 14.6 0.0 0.06 13.8 0.0 1.3 1 0 0 1 1 1 0 Aspartyl protease XdhC_CoxI PF02625.11 gi|119720609|ref|YP_921104.1| - 0.22 11.1 2.4 0.22 11.1 0.8 1.6 1 1 1 2 2 2 0 XdhC and CoxI family Antitoxin-MazE PF04014.13 gi|119720611|ref|YP_921106.1| - 3.1e-08 33.1 0.3 4.5e-08 32.6 0.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1246 PF06849.7 gi|119720611|ref|YP_921106.1| - 0.092 12.5 0.1 0.17 11.6 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1246) PIN PF01850.16 gi|119720612|ref|YP_921107.1| - 0.00014 22.1 0.0 0.0002 21.6 0.0 1.2 1 0 0 1 1 1 1 PIN domain FoP_duplication PF13865.1 gi|119720613|ref|YP_921108.1| - 0.0057 17.0 0.1 0.0071 16.7 0.1 1.2 1 0 0 1 1 1 1 C-terminal duplication domain of Friend of PRMT1 DALR_1 PF05746.10 gi|119720613|ref|YP_921108.1| - 0.0058 16.5 0.1 0.007 16.3 0.0 1.1 1 0 0 1 1 1 1 DALR anticodon binding domain dTDP_sugar_isom PF00908.12 gi|119720615|ref|YP_921110.1| - 4.7e-59 198.6 0.0 5.3e-59 198.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.6 gi|119720615|ref|YP_921110.1| - 0.0055 16.1 0.0 0.0094 15.4 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Toxin_24 PF08094.6 gi|119720615|ref|YP_921110.1| - 0.078 12.5 0.2 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Conotoxin TVIIA/GS family RmlD_sub_bind PF04321.12 gi|119720616|ref|YP_921111.1| - 9.6e-05 21.4 0.0 9.6e-05 21.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Peptidase_S8 PF00082.17 gi|119720617|ref|YP_921112.1| - 3.5e-29 101.8 0.0 6.6e-29 100.9 0.0 1.5 1 0 0 1 1 1 1 Subtilase family DUF1034 PF06280.7 gi|119720617|ref|YP_921112.1| - 0.005 17.2 4.1 0.14 12.5 0.5 3.0 3 0 0 3 3 3 2 Fn3-like domain (DUF1034) Epimerase_2 PF02350.14 gi|119720618|ref|YP_921113.1| - 1.4e-103 346.3 0.0 1.7e-103 346.0 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|119720618|ref|YP_921113.1| - 0.00015 20.7 0.0 0.00022 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|119720618|ref|YP_921113.1| - 0.0036 17.4 0.0 0.0098 16.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.15 gi|119720618|ref|YP_921113.1| - 0.066 12.9 0.2 1.9 8.2 0.1 3.0 2 1 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.1 gi|119720618|ref|YP_921113.1| - 0.094 12.5 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like Methyltransf_21 PF05050.7 gi|119720619|ref|YP_921114.1| - 7.2e-25 87.8 0.0 9.1e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|119720619|ref|YP_921114.1| - 1.8e-06 28.5 0.0 3.9e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|119720619|ref|YP_921114.1| - 7.6e-05 22.3 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|119720619|ref|YP_921114.1| - 0.05 12.6 0.0 0.14 11.2 0.0 1.7 1 1 0 1 1 1 0 Vibrio cholerae RfbT protein Glycos_transf_1 PF00534.15 gi|119720620|ref|YP_921115.1| - 1.1e-43 148.5 0.0 2.4e-43 147.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720620|ref|YP_921115.1| - 4.8e-21 75.3 0.1 1.6e-20 73.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119720620|ref|YP_921115.1| - 9.8e-16 58.3 0.3 3e-15 56.7 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|119720620|ref|YP_921115.1| - 5.8e-13 48.8 0.3 3e-12 46.5 0.1 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|119720620|ref|YP_921115.1| - 4.4e-12 46.1 0.0 1.1e-11 44.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|119720620|ref|YP_921115.1| - 4.7e-11 42.7 0.8 5.2e-10 39.3 0.5 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF3492 PF11997.3 gi|119720620|ref|YP_921115.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3492) UDPG_MGDP_dh_N PF03721.9 gi|119720622|ref|YP_921117.1| - 9.8e-62 207.6 0.1 2.6e-61 206.2 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|119720622|ref|YP_921117.1| - 4.2e-31 107.0 0.0 2.7e-30 104.4 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|119720622|ref|YP_921117.1| - 2.3e-29 101.6 0.0 1.9e-28 98.7 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|119720622|ref|YP_921117.1| - 8.8e-09 35.4 0.0 1.2e-07 31.7 0.0 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|119720622|ref|YP_921117.1| - 9.3e-09 35.6 0.0 0.0019 18.5 0.0 3.3 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|119720622|ref|YP_921117.1| - 9e-06 25.4 0.0 7.4e-05 22.5 0.0 2.4 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|119720622|ref|YP_921117.1| - 4.8e-05 23.0 0.0 0.00012 21.8 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|119720622|ref|YP_921117.1| - 0.0016 18.4 1.4 0.014 15.4 0.2 2.7 2 1 0 2 2 2 1 NADH(P)-binding Methyltransf_18 PF12847.2 gi|119720622|ref|YP_921117.1| - 0.0017 18.9 0.3 0.011 16.2 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain DAO PF01266.19 gi|119720622|ref|YP_921117.1| - 0.0037 16.2 1.0 0.0051 15.7 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|119720622|ref|YP_921117.1| - 0.0053 16.7 0.1 0.026 14.5 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox_2 PF07992.9 gi|119720622|ref|YP_921117.1| - 0.011 15.6 1.1 0.026 14.4 0.2 2.1 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.17 gi|119720622|ref|YP_921117.1| - 0.011 16.2 0.0 0.26 11.7 0.0 2.5 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.21 gi|119720622|ref|YP_921117.1| - 0.018 14.5 0.2 0.085 12.4 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_23 PF13489.1 gi|119720622|ref|YP_921117.1| - 0.02 14.6 0.0 1.5 8.5 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain GIDA PF01134.17 gi|119720622|ref|YP_921117.1| - 0.028 13.2 0.0 0.038 12.8 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|119720622|ref|YP_921117.1| - 0.066 12.0 0.2 0.12 11.1 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|119720622|ref|YP_921117.1| - 0.073 13.4 0.1 0.25 11.7 0.1 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|119720622|ref|YP_921117.1| - 0.087 12.2 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|119720622|ref|YP_921117.1| - 0.099 12.4 0.2 0.26 11.1 0.0 1.8 2 0 0 2 2 1 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|119720622|ref|YP_921117.1| - 0.14 11.3 0.2 1.2 8.2 0.1 2.6 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NTP_transferase PF00483.18 gi|119720623|ref|YP_921118.1| - 7.2e-29 100.8 0.0 1.3e-28 99.9 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|119720623|ref|YP_921118.1| - 1.3e-05 25.3 0.0 2.2e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_trans_1_4 PF13692.1 gi|119720624|ref|YP_921119.1| - 1.1e-15 57.9 0.0 1.8e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|119720624|ref|YP_921119.1| - 1.2e-15 57.3 0.0 2.3e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|119720624|ref|YP_921119.1| - 0.011 15.9 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119720624|ref|YP_921119.1| - 0.014 15.4 0.0 0.092 12.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|119720625|ref|YP_921120.1| - 1.4e-26 92.9 0.0 1.1e-24 86.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720625|ref|YP_921120.1| - 1e-11 45.1 0.1 2e-11 44.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|119720625|ref|YP_921120.1| - 1.6e-05 25.0 0.0 3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119720625|ref|YP_921120.1| - 0.00043 20.4 0.0 0.00072 19.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|119720626|ref|YP_921121.1| - 4.1e-39 133.7 0.0 1.1e-38 132.3 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720626|ref|YP_921121.1| - 1.4e-23 83.5 0.0 3.8e-23 82.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|119720626|ref|YP_921121.1| - 3.7e-13 49.5 0.0 7.7e-13 48.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|119720626|ref|YP_921121.1| - 5.9e-10 39.5 0.0 1.1e-09 38.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|119720626|ref|YP_921121.1| - 1.5e-07 31.5 0.0 3.3e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|119720627|ref|YP_921122.1| - 1.7e-36 125.2 0.0 3.1e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720627|ref|YP_921122.1| - 2.5e-18 66.5 0.1 6.7e-18 65.1 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|119720627|ref|YP_921122.1| - 0.0004 20.1 0.4 0.0036 17.0 0.0 2.7 3 1 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|119720627|ref|YP_921122.1| - 0.001 19.2 0.0 0.0023 18.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119720627|ref|YP_921122.1| - 0.0036 17.4 0.0 0.056 13.5 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|119720628|ref|YP_921123.1| - 1.2e-14 54.1 0.0 1.9e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119720628|ref|YP_921123.1| - 3.9e-12 46.5 0.0 7.1e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|119720628|ref|YP_921123.1| - 3.9e-11 42.9 0.0 2e-10 40.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|119720628|ref|YP_921123.1| - 9.6e-09 35.5 0.0 3.6e-08 33.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|119720628|ref|YP_921123.1| - 7e-05 22.6 0.0 0.00014 21.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|119720628|ref|YP_921123.1| - 0.049 13.9 0.1 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 NTP_transferase PF00483.18 gi|119720629|ref|YP_921124.1| - 1.9e-21 76.4 0.0 2.4e-21 76.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|119720629|ref|YP_921124.1| - 1.7e-15 57.4 0.2 1.9e-15 57.2 0.1 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|119720629|ref|YP_921124.1| - 0.00043 19.8 0.0 0.0006 19.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|119720629|ref|YP_921124.1| - 0.0065 16.1 0.0 0.015 14.9 0.0 1.5 2 0 0 2 2 2 1 Cytidylyltransferase Glycos_transf_2 PF00535.21 gi|119720630|ref|YP_921125.1| - 4.8e-21 75.1 0.0 7.1e-21 74.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|119720630|ref|YP_921125.1| - 1.3e-06 28.4 0.1 2.2e-06 27.6 0.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|119720630|ref|YP_921125.1| - 1.4e-06 28.4 0.0 2.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|119720630|ref|YP_921125.1| - 0.075 12.3 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase PMT_2 PF13231.1 gi|119720631|ref|YP_921126.1| - 0.0028 17.5 9.9 0.0028 17.5 6.9 2.5 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2335 PF10097.4 gi|119720631|ref|YP_921126.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2335) DUF3131 PF11329.3 gi|119720632|ref|YP_921127.1| - 6.6e-96 321.1 0.4 9.8e-96 320.6 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3131) CarboxypepD_reg PF13620.1 gi|119720632|ref|YP_921127.1| - 4.1e-09 36.3 6.2 0.0029 17.6 0.0 4.3 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|119720632|ref|YP_921127.1| - 0.0025 17.3 3.1 0.43 10.2 0.0 4.0 4 0 0 4 4 4 1 Salmonella repeat of unknown function (DUF824) Big_1 PF02369.11 gi|119720632|ref|YP_921127.1| - 0.22 11.4 3.6 0.74 9.7 0.2 3.2 1 1 2 3 3 3 0 Bacterial Ig-like domain (group 1) NPCBM_assoc PF10633.4 gi|119720632|ref|YP_921127.1| - 0.55 10.3 12.2 0.34 10.9 0.7 4.1 3 1 2 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Glyco_tranf_2_3 PF13641.1 gi|119720633|ref|YP_921128.1| - 9.2e-54 182.6 0.2 1.2e-53 182.2 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|119720633|ref|YP_921128.1| - 2.3e-33 115.5 4.9 2.3e-33 115.5 3.4 2.6 3 1 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|119720633|ref|YP_921128.1| - 4.9e-29 101.1 0.0 6.5e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|119720633|ref|YP_921128.1| - 2.7e-21 75.6 0.6 4.1e-21 75.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|119720633|ref|YP_921128.1| - 4.1e-13 49.0 0.0 5.4e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 MFS_1 PF07690.11 gi|119720635|ref|YP_921130.1| - 0.00084 18.1 0.3 0.00094 17.9 0.2 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily AMO PF02461.11 gi|119720635|ref|YP_921130.1| - 0.035 13.8 0.1 0.04 13.6 0.0 1.0 1 0 0 1 1 1 0 Ammonia monooxygenase DUF4131 PF13567.1 gi|119720635|ref|YP_921130.1| - 0.045 13.1 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.4 gi|119720635|ref|YP_921130.1| - 0.081 11.5 0.2 0.086 11.4 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2614 PF11023.3 gi|119720635|ref|YP_921130.1| - 0.14 11.9 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) IncA PF04156.9 gi|119720635|ref|YP_921130.1| - 0.61 9.6 5.8 1 8.9 4.0 1.3 1 1 0 1 1 1 0 IncA protein Cast PF10174.4 gi|119720636|ref|YP_921131.1| - 1.8e-05 23.0 6.2 2e-05 22.8 4.3 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Tropomyosin_1 PF12718.2 gi|119720636|ref|YP_921131.1| - 4.8e-05 23.2 3.5 5.6e-05 23.0 2.4 1.0 1 0 0 1 1 1 1 Tropomyosin like Pox_A_type_inc PF04508.7 gi|119720636|ref|YP_921131.1| - 0.00012 21.5 1.5 0.11 12.3 0.0 2.6 2 1 0 2 2 2 1 Viral A-type inclusion protein repeat UPF0154 PF03672.8 gi|119720636|ref|YP_921131.1| - 0.00012 21.6 0.1 0.00021 20.8 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0154) MAD PF05557.8 gi|119720636|ref|YP_921131.1| - 0.00032 18.9 3.0 0.0004 18.6 2.1 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein TMF_DNA_bd PF12329.3 gi|119720636|ref|YP_921131.1| - 0.00041 20.0 8.5 0.00051 19.8 5.9 1.1 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding PspA_IM30 PF04012.7 gi|119720636|ref|YP_921131.1| - 0.00057 19.3 3.6 0.00067 19.0 2.5 1.0 1 0 0 1 1 1 1 PspA/IM30 family Tropomyosin PF00261.15 gi|119720636|ref|YP_921131.1| - 0.00098 18.2 4.7 0.0011 18.0 3.3 1.0 1 0 0 1 1 1 1 Tropomyosin Filament PF00038.16 gi|119720636|ref|YP_921131.1| - 0.0014 18.2 4.6 0.0016 17.9 3.2 1.0 1 0 0 1 1 1 1 Intermediate filament protein MscS_porin PF12795.2 gi|119720636|ref|YP_921131.1| - 0.0018 17.6 6.7 0.0023 17.3 4.6 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain TBPIP PF07106.8 gi|119720636|ref|YP_921131.1| - 0.0027 17.2 2.4 0.0032 17.0 1.6 1.1 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Lebercilin PF15619.1 gi|119720636|ref|YP_921131.1| - 0.0028 17.0 2.4 0.0034 16.8 1.6 1.1 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease MotA_ExbB PF01618.11 gi|119720636|ref|YP_921131.1| - 0.0033 17.0 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family AAA_13 PF13166.1 gi|119720636|ref|YP_921131.1| - 0.0034 15.9 0.9 0.0037 15.8 0.6 1.0 1 0 0 1 1 1 1 AAA domain Gp58 PF07902.6 gi|119720636|ref|YP_921131.1| - 0.0036 15.5 1.0 0.0037 15.5 0.7 1.0 1 0 0 1 1 1 1 gp58-like protein Spc7 PF08317.6 gi|119720636|ref|YP_921131.1| - 0.0047 15.6 5.0 0.0055 15.4 3.4 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein HlyD PF00529.15 gi|119720636|ref|YP_921131.1| - 0.0064 15.8 1.3 0.0073 15.6 0.9 1.2 1 0 0 1 1 1 1 HlyD family secretion protein DUF2353 PF09789.4 gi|119720636|ref|YP_921131.1| - 0.0072 15.6 1.3 0.0091 15.2 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) NPV_P10 PF05531.7 gi|119720636|ref|YP_921131.1| - 0.0079 16.4 0.9 0.01 16.0 0.6 1.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|119720636|ref|YP_921131.1| - 0.0095 15.7 0.4 0.016 15.0 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) WEMBL PF05701.6 gi|119720636|ref|YP_921131.1| - 0.01 14.3 5.3 0.012 14.1 3.7 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light E2R135 PF11570.3 gi|119720636|ref|YP_921131.1| - 0.011 15.8 2.1 0.014 15.4 1.4 1.1 1 0 0 1 1 1 0 Coiled-coil receptor-binding R-domain of colicin E2 COG2 PF06148.6 gi|119720636|ref|YP_921131.1| - 0.011 15.5 1.6 0.015 15.2 1.1 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Myosin_tail_1 PF01576.14 gi|119720636|ref|YP_921131.1| - 0.011 13.4 4.8 0.013 13.2 3.3 1.0 1 0 0 1 1 1 0 Myosin tail Bap31 PF05529.7 gi|119720636|ref|YP_921131.1| - 0.011 15.1 1.4 0.014 14.9 1.0 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like Phage_GP20 PF06810.6 gi|119720636|ref|YP_921131.1| - 0.011 15.1 1.1 0.013 14.8 0.8 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 IncA PF04156.9 gi|119720636|ref|YP_921131.1| - 0.012 15.1 7.2 0.012 15.1 5.0 1.6 1 1 1 2 2 1 0 IncA protein DUF2730 PF10805.3 gi|119720636|ref|YP_921131.1| - 0.013 15.2 0.6 0.028 14.1 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) CENP-F_leu_zip PF10473.4 gi|119720636|ref|YP_921131.1| - 0.015 15.1 5.9 0.019 14.8 4.1 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin-6_N PF09177.6 gi|119720636|ref|YP_921131.1| - 0.015 15.6 0.4 0.022 15.1 0.3 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal FlxA PF14282.1 gi|119720636|ref|YP_921131.1| - 0.016 15.1 1.9 0.022 14.6 1.3 1.2 1 0 0 1 1 1 0 FlxA-like protein Reo_sigmaC PF04582.7 gi|119720636|ref|YP_921131.1| - 0.016 14.3 0.2 0.016 14.3 0.1 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Spidroin_MaSp PF11260.3 gi|119720636|ref|YP_921131.1| - 0.018 15.1 0.9 0.02 14.9 0.7 1.2 1 0 0 1 1 1 0 Major ampullate spidroin 1 and 2 DUF4201 PF13870.1 gi|119720636|ref|YP_921131.1| - 0.018 14.4 3.3 0.024 14.1 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Bacillus_HBL PF05791.6 gi|119720636|ref|YP_921131.1| - 0.022 14.1 0.4 0.027 13.8 0.3 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Spc24 PF08286.6 gi|119720636|ref|YP_921131.1| - 0.023 14.3 0.8 0.029 14.0 0.6 1.2 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 DegS PF05384.6 gi|119720636|ref|YP_921131.1| - 0.023 13.8 0.8 0.03 13.5 0.5 1.2 1 0 0 1 1 1 0 Sensor protein DegS ALIX_LYPXL_bnd PF13949.1 gi|119720636|ref|YP_921131.1| - 0.026 13.4 2.3 0.032 13.2 1.6 1.0 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV TPR_MLP1_2 PF07926.7 gi|119720636|ref|YP_921131.1| - 0.027 14.1 7.3 0.041 13.6 5.1 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Prefoldin_2 PF01920.15 gi|119720636|ref|YP_921131.1| - 0.032 13.9 4.5 0.13 11.9 0.3 2.0 1 1 1 2 2 2 0 Prefoldin subunit Laminin_II PF06009.7 gi|119720636|ref|YP_921131.1| - 0.034 13.9 1.7 0.041 13.6 1.2 1.1 1 0 0 1 1 1 0 Laminin Domain II DUF3847 PF12958.2 gi|119720636|ref|YP_921131.1| - 0.038 13.7 0.7 0.054 13.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) Mod_r PF07200.8 gi|119720636|ref|YP_921131.1| - 0.038 13.8 3.0 0.043 13.7 2.1 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein ADIP PF11559.3 gi|119720636|ref|YP_921131.1| - 0.039 13.8 5.9 0.053 13.4 4.1 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding OEP PF02321.13 gi|119720636|ref|YP_921131.1| - 0.04 13.5 6.6 0.045 13.3 4.5 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein DUF3552 PF12072.3 gi|119720636|ref|YP_921131.1| - 0.041 13.1 11.6 0.51 9.5 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Tektin PF03148.9 gi|119720636|ref|YP_921131.1| - 0.041 12.4 2.2 0.048 12.1 1.5 1.1 1 0 0 1 1 1 0 Tektin family Baculo_PEP_C PF04513.7 gi|119720636|ref|YP_921131.1| - 0.042 13.6 0.5 0.048 13.4 0.4 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus MtrB PF05440.7 gi|119720636|ref|YP_921131.1| - 0.042 13.8 0.0 0.055 13.5 0.0 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B EMP24_GP25L PF01105.19 gi|119720636|ref|YP_921131.1| - 0.042 13.5 0.1 0.05 13.3 0.1 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD MT PF12777.2 gi|119720636|ref|YP_921131.1| - 0.044 12.5 0.0 0.045 12.4 0.0 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor End3 PF12761.2 gi|119720636|ref|YP_921131.1| - 0.044 13.4 2.7 0.06 12.9 1.9 1.2 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 DUF972 PF06156.8 gi|119720636|ref|YP_921131.1| - 0.044 14.1 0.0 0.047 14.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DUF2562 PF10814.3 gi|119720636|ref|YP_921131.1| - 0.045 13.6 0.5 0.05 13.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2562) V_ATPase_I PF01496.14 gi|119720636|ref|YP_921131.1| - 0.055 11.3 0.1 0.053 11.3 0.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Cep57_CLD_2 PF14197.1 gi|119720636|ref|YP_921131.1| - 0.055 13.4 5.9 0.17 11.8 3.5 2.0 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 CALCOCO1 PF07888.6 gi|119720636|ref|YP_921131.1| - 0.057 11.7 1.6 0.058 11.6 1.1 1.0 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like FlaC_arch PF05377.6 gi|119720636|ref|YP_921131.1| - 0.068 13.0 2.0 0.29 11.0 0.7 2.1 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Atg14 PF10186.4 gi|119720636|ref|YP_921131.1| - 0.074 11.9 4.0 0.092 11.6 2.8 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FemAB PF02388.11 gi|119720636|ref|YP_921131.1| - 0.08 11.6 0.0 0.086 11.5 0.0 1.0 1 0 0 1 1 1 0 FemAB family EAP30 PF04157.11 gi|119720636|ref|YP_921131.1| - 0.086 11.9 1.2 0.1 11.7 0.8 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family Cluap1 PF10234.4 gi|119720636|ref|YP_921131.1| - 0.087 12.0 4.0 0.1 11.7 2.8 1.0 1 0 0 1 1 1 0 Clusterin-associated protein-1 Sec2p PF06428.6 gi|119720636|ref|YP_921131.1| - 0.088 12.6 3.7 0.13 12.1 2.6 1.3 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p GAS PF13851.1 gi|119720636|ref|YP_921131.1| - 0.09 11.9 3.2 0.1 11.7 2.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF2968 PF11180.3 gi|119720636|ref|YP_921131.1| - 0.091 12.1 4.4 0.12 11.7 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Macoilin PF09726.4 gi|119720636|ref|YP_921131.1| - 0.092 11.0 2.8 0.099 10.9 1.9 1.0 1 0 0 1 1 1 0 Transmembrane protein DUF4094 PF13334.1 gi|119720636|ref|YP_921131.1| - 0.099 13.0 4.7 2.1 8.7 2.8 2.6 2 1 0 2 2 1 0 Domain of unknown function (DUF4094) COG6 PF06419.6 gi|119720636|ref|YP_921131.1| - 0.099 10.7 1.8 0.12 10.4 1.3 1.0 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 TMF_TATA_bd PF12325.3 gi|119720636|ref|YP_921131.1| - 0.1 12.3 4.5 0.15 11.8 3.1 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding RmuC PF02646.11 gi|119720636|ref|YP_921131.1| - 0.1 11.4 1.2 0.13 11.1 0.9 1.0 1 0 0 1 1 1 0 RmuC family Seryl_tRNA_N PF02403.17 gi|119720636|ref|YP_921131.1| - 0.11 12.5 3.1 0.18 11.8 2.2 1.3 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Laminin_I PF06008.9 gi|119720636|ref|YP_921131.1| - 0.11 11.7 3.5 0.16 11.2 2.4 1.2 1 0 0 1 1 1 0 Laminin Domain I CCDC144C PF14915.1 gi|119720636|ref|YP_921131.1| - 0.11 11.3 4.8 0.24 10.2 3.4 1.4 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region DUF3040 PF11239.3 gi|119720636|ref|YP_921131.1| - 0.12 12.4 0.2 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Prominin PF05478.6 gi|119720636|ref|YP_921131.1| - 0.12 9.9 0.7 0.13 9.7 0.5 1.1 1 0 0 1 1 1 0 Prominin RTBV_P46 PF06216.6 gi|119720636|ref|YP_921131.1| - 0.12 11.1 1.5 0.48 9.2 0.6 1.7 1 1 0 1 1 1 0 Rice tungro bacilliform virus P46 protein gpW PF02831.10 gi|119720636|ref|YP_921131.1| - 0.13 11.8 0.5 0.29 10.6 0.3 1.7 1 1 0 1 1 1 0 gpW HrpB7 PF09486.5 gi|119720636|ref|YP_921131.1| - 0.13 12.1 3.5 0.24 11.3 2.4 1.4 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) EzrA PF06160.7 gi|119720636|ref|YP_921131.1| - 0.14 10.3 3.0 0.22 9.6 2.0 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF1043 PF06295.7 gi|119720636|ref|YP_921131.1| - 0.15 11.7 2.1 0.96 9.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) Lzipper-MIP1 PF14389.1 gi|119720636|ref|YP_921131.1| - 0.16 12.1 3.7 0.81 9.8 2.5 1.8 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 Fez1 PF06818.10 gi|119720636|ref|YP_921131.1| - 0.16 11.9 5.4 0.18 11.8 2.8 1.6 1 1 1 2 2 2 0 Fez1 DUF3584 PF12128.3 gi|119720636|ref|YP_921131.1| - 0.17 9.1 4.0 0.2 8.9 2.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) XhlA PF10779.4 gi|119720636|ref|YP_921131.1| - 0.18 11.7 5.4 3.7 7.5 3.8 2.1 1 1 0 1 1 1 0 Haemolysin XhlA DivIC PF04977.10 gi|119720636|ref|YP_921131.1| - 0.2 11.1 4.7 0.23 10.9 2.3 1.7 1 1 1 2 2 2 0 Septum formation initiator Prefoldin PF02996.12 gi|119720636|ref|YP_921131.1| - 0.2 11.2 3.1 5.1 6.7 0.2 1.9 1 1 1 2 2 2 0 Prefoldin subunit Ufd2P_core PF10408.4 gi|119720636|ref|YP_921131.1| - 0.21 9.8 0.5 0.25 9.5 0.4 1.0 1 0 0 1 1 1 0 Ubiquitin elongating factor core DUF3138 PF11336.3 gi|119720636|ref|YP_921131.1| - 0.21 9.7 4.3 0.57 8.2 2.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3138) Mnd1 PF03962.10 gi|119720636|ref|YP_921131.1| - 0.22 11.1 2.5 0.37 10.4 1.8 1.4 1 1 0 1 1 1 0 Mnd1 family Borrelia_REV PF03978.8 gi|119720636|ref|YP_921131.1| - 0.22 11.2 0.9 1.5 8.5 0.6 1.9 1 1 0 1 1 1 0 Borrelia burgdorferi REV protein HAUS5 PF14817.1 gi|119720636|ref|YP_921131.1| - 0.22 10.0 5.0 0.25 9.8 3.5 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 HR1 PF02185.11 gi|119720636|ref|YP_921131.1| - 0.24 11.1 5.3 0.34 10.6 3.7 1.2 1 0 0 1 1 1 0 Hr1 repeat OmpH PF03938.9 gi|119720636|ref|YP_921131.1| - 0.26 11.2 4.1 0.34 10.8 2.8 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_27 PF13514.1 gi|119720636|ref|YP_921131.1| - 0.26 8.8 3.4 0.32 8.6 2.4 1.0 1 0 0 1 1 1 0 AAA domain Ead_Ea22 PF13935.1 gi|119720636|ref|YP_921131.1| - 0.27 11.5 2.3 0.32 11.3 1.6 1.1 1 0 0 1 1 1 0 Ead/Ea22-like protein YtxH PF12732.2 gi|119720636|ref|YP_921131.1| - 0.27 11.6 5.5 0.82 10.0 0.3 2.2 2 0 0 2 2 2 0 YtxH-like protein DUF4200 PF13863.1 gi|119720636|ref|YP_921131.1| - 0.27 11.1 3.0 0.59 10.0 2.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) ATG16 PF08614.6 gi|119720636|ref|YP_921131.1| - 0.28 10.9 4.4 0.35 10.6 3.1 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) HALZ PF02183.13 gi|119720636|ref|YP_921131.1| - 0.3 10.8 4.6 2.3 8.0 0.5 2.2 1 1 1 2 2 2 0 Homeobox associated leucine zipper Rab5-bind PF09311.6 gi|119720636|ref|YP_921131.1| - 0.31 10.9 5.7 0.39 10.5 3.9 1.1 1 0 0 1 1 1 0 Rabaptin-like protein FliJ PF02050.11 gi|119720636|ref|YP_921131.1| - 0.39 10.7 4.2 1.3 9.0 0.2 1.8 1 1 0 1 1 1 0 Flagellar FliJ protein Nup54 PF13874.1 gi|119720636|ref|YP_921131.1| - 0.42 10.2 3.3 3.3 7.3 2.3 1.9 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 IFT57 PF10498.4 gi|119720636|ref|YP_921131.1| - 0.46 9.1 2.5 0.53 8.9 1.8 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Jnk-SapK_ap_N PF09744.4 gi|119720636|ref|YP_921131.1| - 0.47 10.4 2.5 0.6 10.0 1.7 1.2 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 SlyX PF04102.7 gi|119720636|ref|YP_921131.1| - 0.47 10.8 3.2 1.6 9.1 2.2 1.8 1 1 0 1 1 1 0 SlyX DUF4140 PF13600.1 gi|119720636|ref|YP_921131.1| - 0.5 10.8 6.9 0.53 10.7 3.3 1.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Vps5 PF09325.5 gi|119720636|ref|YP_921131.1| - 0.52 9.5 3.6 1.1 8.5 2.0 1.4 1 1 0 1 1 1 0 Vps5 C terminal like APG6 PF04111.7 gi|119720636|ref|YP_921131.1| - 0.67 8.9 3.2 0.78 8.7 2.2 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 FUN14 PF04930.10 gi|119720636|ref|YP_921131.1| - 0.68 10.2 5.0 4.1 7.7 1.9 2.1 1 1 1 2 2 2 0 FUN14 family DUF4407 PF14362.1 gi|119720636|ref|YP_921131.1| - 1 8.2 5.2 0.5 9.2 2.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Microtub_assoc PF07989.6 gi|119720636|ref|YP_921131.1| - 1.1 9.1 3.5 16 5.3 0.2 2.1 1 1 1 2 2 2 0 Microtubule associated DUF3618 PF12277.3 gi|119720636|ref|YP_921131.1| - 1.1 9.3 5.3 1.9 8.5 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3618) YscO PF07321.7 gi|119720636|ref|YP_921131.1| - 1.2 8.9 6.4 5.5 6.7 4.5 1.8 1 1 0 1 1 1 0 Type III secretion protein YscO DUF883 PF05957.8 gi|119720636|ref|YP_921131.1| - 4 7.9 9.5 30 5.1 6.6 2.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Sugarporin_N PF11471.3 gi|119720636|ref|YP_921131.1| - 6.1 6.5 7.8 2.9 7.6 1.9 2.5 1 1 2 3 3 3 0 Maltoporin periplasmic N-terminal extension DUF2283 PF10049.4 gi|119720637|ref|YP_921132.1| - 0.001 18.8 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF86 PF01934.12 gi|119720639|ref|YP_921134.1| - 1.5e-20 73.0 0.0 5e-20 71.3 0.0 1.9 3 0 0 3 3 3 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|119720639|ref|YP_921134.1| - 4.1e-11 43.0 0.1 1.1e-10 41.6 0.0 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Tropomyosin PF00261.15 gi|119720640|ref|YP_921135.1| - 1.1e-10 40.9 7.3 1.1e-10 40.9 5.1 2.0 2 0 0 2 2 2 1 Tropomyosin RmuC PF02646.11 gi|119720640|ref|YP_921135.1| - 2.5e-07 29.8 0.3 0.0005 19.0 0.1 2.3 1 1 1 2 2 2 2 RmuC family Tropomyosin_1 PF12718.2 gi|119720640|ref|YP_921135.1| - 4.3e-07 29.8 2.7 4.3e-07 29.8 1.9 2.2 2 1 0 2 2 1 1 Tropomyosin like DUF1664 PF07889.7 gi|119720640|ref|YP_921135.1| - 1e-06 28.5 0.6 0.0004 20.1 0.1 2.3 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Prefoldin_2 PF01920.15 gi|119720640|ref|YP_921135.1| - 1.4e-06 27.9 4.1 0.057 13.1 0.2 4.2 2 1 3 5 5 5 1 Prefoldin subunit Laminin_II PF06009.7 gi|119720640|ref|YP_921135.1| - 1.8e-06 27.7 0.1 0.00015 21.5 0.0 2.4 1 1 1 2 2 2 2 Laminin Domain II IncA PF04156.9 gi|119720640|ref|YP_921135.1| - 3.5e-06 26.7 6.2 0.00012 21.7 0.7 2.5 1 1 1 2 2 2 2 IncA protein Sugarporin_N PF11471.3 gi|119720640|ref|YP_921135.1| - 5.7e-06 25.8 17.2 0.19 11.4 2.6 5.4 1 1 2 4 4 4 2 Maltoporin periplasmic N-terminal extension NPV_P10 PF05531.7 gi|119720640|ref|YP_921135.1| - 1.2e-05 25.4 0.0 0.1 12.8 0.0 3.1 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.6 gi|119720640|ref|YP_921135.1| - 1.6e-05 24.7 2.0 1.6 8.6 0.1 3.8 4 0 0 4 4 3 0 Flagella accessory protein C (FlaC) COG2 PF06148.6 gi|119720640|ref|YP_921135.1| - 1.7e-05 24.7 5.5 0.027 14.3 0.6 3.4 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 XhlA PF10779.4 gi|119720640|ref|YP_921135.1| - 2.3e-05 24.2 0.3 0.51 10.2 0.1 3.4 1 1 2 3 3 3 2 Haemolysin XhlA Prefoldin_3 PF13758.1 gi|119720640|ref|YP_921135.1| - 2.7e-05 23.8 3.5 0.7 9.6 0.0 4.0 3 2 1 4 4 3 1 Prefoldin subunit MscS_porin PF12795.2 gi|119720640|ref|YP_921135.1| - 2.8e-05 23.5 0.0 0.089 12.1 0.0 2.3 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain Snapin_Pallidin PF14712.1 gi|119720640|ref|YP_921135.1| - 4.4e-05 23.6 1.0 0.049 13.9 0.1 4.1 2 1 0 3 3 2 1 Snapin/Pallidin Nup54 PF13874.1 gi|119720640|ref|YP_921135.1| - 4.5e-05 23.1 0.9 0.00021 20.9 0.2 2.3 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 EzrA PF06160.7 gi|119720640|ref|YP_921135.1| - 6.2e-05 21.3 0.2 0.00032 19.0 0.0 2.0 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Reo_sigmaC PF04582.7 gi|119720640|ref|YP_921135.1| - 7.2e-05 22.1 0.0 0.019 14.1 0.0 2.0 1 1 1 2 2 2 1 Reovirus sigma C capsid protein FH2 PF02181.18 gi|119720640|ref|YP_921135.1| - 8.1e-05 21.6 1.5 0.41 9.4 0.0 3.0 1 1 1 3 3 3 2 Formin Homology 2 Domain DUF16 PF01519.11 gi|119720640|ref|YP_921135.1| - 8.2e-05 22.7 3.5 0.2 11.8 0.0 3.5 1 1 1 3 3 3 2 Protein of unknown function DUF16 Flagellin_C PF00700.16 gi|119720640|ref|YP_921135.1| - 9.9e-05 22.4 0.1 0.71 10.0 0.0 3.2 1 1 1 3 3 3 1 Bacterial flagellin C-terminal helical region SNARE PF05739.14 gi|119720640|ref|YP_921135.1| - 0.00012 21.6 0.8 0.66 9.6 0.0 4.3 2 2 1 3 3 3 1 SNARE domain Baculo_PEP_C PF04513.7 gi|119720640|ref|YP_921135.1| - 0.00014 21.7 0.0 0.011 15.5 0.0 2.4 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_I PF06008.9 gi|119720640|ref|YP_921135.1| - 0.00015 21.2 5.9 0.034 13.4 0.3 2.9 2 1 1 3 3 3 2 Laminin Domain I Matrilin_ccoil PF10393.4 gi|119720640|ref|YP_921135.1| - 0.00023 20.4 13.8 0.089 12.1 0.1 5.2 3 2 2 5 5 4 1 Trimeric coiled-coil oligomerisation domain of matrilin UPF0184 PF03670.8 gi|119720640|ref|YP_921135.1| - 0.00023 21.2 0.2 0.77 9.9 0.0 3.6 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0184) DUF3584 PF12128.3 gi|119720640|ref|YP_921135.1| - 0.00027 18.4 1.5 0.00036 18.0 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) ATP-synt_B PF00430.13 gi|119720640|ref|YP_921135.1| - 0.00031 20.5 0.9 1.1 9.0 0.2 3.3 1 1 3 4 4 4 1 ATP synthase B/B' CF(0) DUF869 PF05911.6 gi|119720640|ref|YP_921135.1| - 0.00032 19.1 1.9 0.00065 18.0 0.4 1.8 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF2360 PF10152.4 gi|119720640|ref|YP_921135.1| - 0.00032 21.0 0.2 0.63 10.3 0.1 3.2 1 1 0 1 1 1 1 Predicted coiled-coil domain-containing protein (DUF2360) MtrG PF04210.8 gi|119720640|ref|YP_921135.1| - 0.00039 20.0 9.8 2.8 7.6 0.2 5.2 1 1 4 5 5 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G V-SNARE_C PF12352.3 gi|119720640|ref|YP_921135.1| - 0.00055 19.9 0.2 2.6 8.1 0.1 3.8 2 2 1 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus CENP-F_leu_zip PF10473.4 gi|119720640|ref|YP_921135.1| - 0.00072 19.4 6.2 0.00072 19.4 4.3 1.9 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Vac_Fusion PF02346.11 gi|119720640|ref|YP_921135.1| - 0.00073 18.8 3.7 1.6 8.2 0.1 3.8 1 1 2 4 4 4 0 Chordopoxvirus fusion protein IFT57 PF10498.4 gi|119720640|ref|YP_921135.1| - 0.00079 18.2 0.0 0.0046 15.7 0.0 1.7 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 WASH_WAHD PF11945.3 gi|119720640|ref|YP_921135.1| - 0.00081 18.7 0.6 0.38 9.9 0.0 3.1 1 1 2 3 3 3 1 WAHD domain of WASH complex Trns_repr_metal PF02583.12 gi|119720640|ref|YP_921135.1| - 0.001 19.2 7.6 0.016 15.4 0.3 3.5 1 1 2 3 3 3 1 Metal-sensitive transcriptional repressor SlyX PF04102.7 gi|119720640|ref|YP_921135.1| - 0.0011 19.3 2.5 0.059 13.7 0.3 3.3 1 1 3 4 4 4 2 SlyX Cast PF10174.4 gi|119720640|ref|YP_921135.1| - 0.0014 16.7 5.1 0.0014 16.7 3.6 2.0 1 1 0 2 2 2 1 RIM-binding protein of the cytomatrix active zone DUF4140 PF13600.1 gi|119720640|ref|YP_921135.1| - 0.0015 18.9 11.4 12 6.4 5.1 4.3 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4164 PF13747.1 gi|119720640|ref|YP_921135.1| - 0.0019 18.2 12.0 0.21 11.7 2.9 2.8 1 1 1 2 2 2 2 Domain of unknown function (DUF4164) CCDC-167 PF15188.1 gi|119720640|ref|YP_921135.1| - 0.0019 18.0 9.9 0.12 12.3 2.5 3.7 2 1 1 3 3 2 1 Coiled-coil domain-containing protein 167 FliJ PF02050.11 gi|119720640|ref|YP_921135.1| - 0.0023 17.9 0.6 0.27 11.2 0.0 2.8 1 1 2 3 3 3 2 Flagellar FliJ protein Nsp1_C PF05064.8 gi|119720640|ref|YP_921135.1| - 0.0033 17.0 0.2 3.7 7.2 0.1 2.9 1 1 1 2 2 2 0 Nsp1-like C-terminal region PilJ PF13675.1 gi|119720640|ref|YP_921135.1| - 0.0043 17.3 0.3 1.2 9.4 0.1 2.7 1 1 2 3 3 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term Spc7 PF08317.6 gi|119720640|ref|YP_921135.1| - 0.0045 15.6 1.3 0.0097 14.5 0.1 1.8 1 1 1 2 2 2 1 Spc7 kinetochore protein GAS PF13851.1 gi|119720640|ref|YP_921135.1| - 0.0048 16.1 1.1 0.023 13.9 0.2 2.3 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Syntaxin-6_N PF09177.6 gi|119720640|ref|YP_921135.1| - 0.0052 17.1 0.8 0.57 10.6 0.1 2.5 2 1 0 2 2 2 1 Syntaxin 6, N-terminal Fmp27_WPPW PF10359.4 gi|119720640|ref|YP_921135.1| - 0.0053 15.2 0.9 0.026 12.9 0.2 1.9 1 1 1 2 2 2 1 RNA pol II promoter Fmp27 protein domain DUF3552 PF12072.3 gi|119720640|ref|YP_921135.1| - 0.0058 15.8 12.2 0.032 13.4 3.1 2.9 2 1 1 3 3 3 2 Domain of unknown function (DUF3552) DUF2802 PF10975.3 gi|119720640|ref|YP_921135.1| - 0.0071 16.0 0.6 22 4.9 0.1 4.4 1 1 4 5 5 5 0 Protein of unknown function (DUF2802) Dynamitin PF04912.9 gi|119720640|ref|YP_921135.1| - 0.0083 14.9 1.1 0.97 8.1 0.2 2.6 1 1 1 2 2 2 1 Dynamitin V_ATPase_I PF01496.14 gi|119720640|ref|YP_921135.1| - 0.011 13.6 2.1 0.042 11.7 1.2 2.0 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Tektin PF03148.9 gi|119720640|ref|YP_921135.1| - 0.011 14.2 0.5 0.052 12.0 0.4 1.9 1 1 0 1 1 1 0 Tektin family AAA_13 PF13166.1 gi|119720640|ref|YP_921135.1| - 0.014 13.8 0.0 0.077 11.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain Prefoldin PF02996.12 gi|119720640|ref|YP_921135.1| - 0.016 14.8 0.4 21 4.8 0.0 3.8 2 1 2 4 4 4 0 Prefoldin subunit MutS_III PF05192.13 gi|119720640|ref|YP_921135.1| - 0.016 14.9 5.8 0.86 9.3 4.0 2.8 1 1 0 1 1 1 0 MutS domain III DUF2730 PF10805.3 gi|119720640|ref|YP_921135.1| - 0.016 14.9 5.5 0.37 10.5 0.9 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF2730) TBPIP PF07106.8 gi|119720640|ref|YP_921135.1| - 0.018 14.5 2.7 0.55 9.7 0.2 3.0 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ADIP PF11559.3 gi|119720640|ref|YP_921135.1| - 0.022 14.6 1.6 0.2 11.5 0.2 2.7 2 1 2 4 4 3 0 Afadin- and alpha -actinin-Binding Spectrin PF00435.16 gi|119720640|ref|YP_921135.1| - 0.024 14.9 1.7 0.25 11.6 0.6 2.9 1 1 1 2 2 1 0 Spectrin repeat DUF342 PF03961.8 gi|119720640|ref|YP_921135.1| - 0.024 13.0 0.7 0.047 12.1 0.1 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF342) Sec3_C PF09763.4 gi|119720640|ref|YP_921135.1| - 0.028 12.5 0.0 2.3 6.2 0.0 2.2 1 1 1 2 2 2 0 Exocyst complex component Sec3 ATG16 PF08614.6 gi|119720640|ref|YP_921135.1| - 0.03 14.1 0.9 0.062 13.1 0.6 1.6 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF1110 PF06533.7 gi|119720640|ref|YP_921135.1| - 0.038 13.8 5.7 2 8.1 0.3 3.4 2 1 1 3 3 2 0 Protein of unknown function (DUF1110) Vps5 PF09325.5 gi|119720640|ref|YP_921135.1| - 0.04 13.1 0.8 3.2 6.9 0.1 2.6 1 1 2 3 3 3 0 Vps5 C terminal like BLOC1_2 PF10046.4 gi|119720640|ref|YP_921135.1| - 0.051 13.7 0.1 5.8 7.1 0.1 2.8 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HemX PF04375.9 gi|119720640|ref|YP_921135.1| - 0.052 12.1 0.1 0.18 10.3 0.1 1.9 1 1 0 1 1 1 0 HemX KCNQ_channel PF03520.9 gi|119720640|ref|YP_921135.1| - 0.061 12.6 5.4 20 4.3 0.1 4.0 1 1 3 4 4 4 0 KCNQ voltage-gated potassium channel DUF1978 PF09321.5 gi|119720640|ref|YP_921135.1| - 0.072 12.5 9.0 0.89 8.9 1.3 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1978) DUF812 PF05667.6 gi|119720640|ref|YP_921135.1| - 0.081 11.4 1.2 0.31 9.4 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF4201 PF13870.1 gi|119720640|ref|YP_921135.1| - 0.088 12.2 4.4 0.28 10.5 0.2 2.8 2 2 1 3 3 2 0 Domain of unknown function (DUF4201) DUF2408 PF10303.4 gi|119720640|ref|YP_921135.1| - 0.092 12.8 1.2 0.51 10.4 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) DUF3847 PF12958.2 gi|119720640|ref|YP_921135.1| - 0.094 12.4 9.3 5.5 6.8 0.9 4.6 2 2 3 5 5 5 0 Protein of unknown function (DUF3847) HrpB7 PF09486.5 gi|119720640|ref|YP_921135.1| - 0.1 12.5 7.5 0.2 11.5 3.1 3.0 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Transposase_22 PF02994.9 gi|119720640|ref|YP_921135.1| - 0.11 11.0 7.1 0.12 10.8 0.2 2.8 2 1 1 3 3 2 0 L1 transposable element Sec34 PF04136.10 gi|119720640|ref|YP_921135.1| - 0.12 12.0 0.0 4.5 6.9 0.0 2.4 1 1 2 3 3 3 0 Sec34-like family KxDL PF10241.4 gi|119720640|ref|YP_921135.1| - 0.15 11.9 0.3 15 5.5 0.1 2.9 1 1 2 3 3 3 0 Uncharacterized conserved protein Noelin-1 PF12308.3 gi|119720640|ref|YP_921135.1| - 0.17 11.6 0.4 16 5.3 0.0 2.6 1 1 1 2 2 2 0 Neurogenesis glycoprotein APG6 PF04111.7 gi|119720640|ref|YP_921135.1| - 0.2 10.6 3.4 0.086 11.8 0.3 1.8 1 1 1 2 2 2 0 Autophagy protein Apg6 DASH_Spc19 PF08287.6 gi|119720640|ref|YP_921135.1| - 0.23 11.0 8.0 4.4 6.9 2.4 3.2 1 1 1 2 2 2 0 Spc19 WEMBL PF05701.6 gi|119720640|ref|YP_921135.1| - 0.23 9.8 9.3 0.14 10.5 3.4 2.1 1 1 1 2 2 2 0 Weak chloroplast movement under blue light PTRF_SDPR PF15237.1 gi|119720640|ref|YP_921135.1| - 0.26 10.6 3.3 1.7 7.9 0.6 2.8 1 1 0 2 2 2 0 PTRF/SDPR family Cortex-I_coil PF09304.5 gi|119720640|ref|YP_921135.1| - 0.26 11.3 9.3 0.48 10.4 1.3 3.0 1 1 2 3 3 3 0 Cortexillin I, coiled coil LUC7 PF03194.10 gi|119720640|ref|YP_921135.1| - 0.27 10.7 3.8 1 8.7 2.6 2.1 1 1 0 1 1 1 0 LUC7 N_terminus PspA_IM30 PF04012.7 gi|119720640|ref|YP_921135.1| - 0.27 10.5 6.5 0.12 11.7 1.4 2.5 2 2 0 2 2 1 0 PspA/IM30 family CCDC144C PF14915.1 gi|119720640|ref|YP_921135.1| - 0.29 10.0 3.7 3.2 6.5 0.3 2.6 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region Lebercilin PF15619.1 gi|119720640|ref|YP_921135.1| - 0.31 10.4 7.6 0.29 10.5 2.4 2.7 1 1 2 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease Uds1 PF15456.1 gi|119720640|ref|YP_921135.1| - 0.37 10.7 8.4 3 7.8 1.7 3.7 2 1 1 3 3 2 0 Up-regulated During Septation Mnd1 PF03962.10 gi|119720640|ref|YP_921135.1| - 0.46 10.1 3.2 1.5 8.4 0.5 2.4 1 1 1 2 2 2 0 Mnd1 family TMF_DNA_bd PF12329.3 gi|119720640|ref|YP_921135.1| - 0.46 10.3 10.9 2.8 7.8 0.2 4.4 2 1 4 6 6 5 0 TATA element modulatory factor 1 DNA binding Val_tRNA-synt_C PF10458.4 gi|119720640|ref|YP_921135.1| - 0.49 10.5 14.5 18 5.5 0.4 5.9 2 1 2 5 5 5 0 Valyl tRNA synthetase tRNA binding arm DUF1319 PF07028.6 gi|119720640|ref|YP_921135.1| - 0.77 9.9 6.7 4.6 7.4 0.1 3.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1319) DUF4349 PF14257.1 gi|119720640|ref|YP_921135.1| - 0.88 8.7 9.1 10 5.2 0.5 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) DegS PF05384.6 gi|119720640|ref|YP_921135.1| - 1.3 8.1 5.7 3.3 6.8 1.9 2.7 1 1 1 2 2 2 0 Sensor protein DegS Streptin-Immun PF11083.3 gi|119720640|ref|YP_921135.1| - 1.5 8.8 3.9 18 5.3 0.1 3.7 2 2 2 4 4 4 0 Lantibiotic streptin immunity protein ERM PF00769.14 gi|119720640|ref|YP_921135.1| - 1.8 8.0 7.3 0.18 11.3 1.5 1.9 2 0 0 2 2 2 0 Ezrin/radixin/moesin family FbpA PF05833.6 gi|119720640|ref|YP_921135.1| - 1.8 6.9 7.2 2.5 6.5 0.6 3.0 2 1 1 3 3 3 0 Fibronectin-binding protein A N-terminus (FbpA) MIF4G_like_2 PF09090.6 gi|119720640|ref|YP_921135.1| - 2.5 7.2 4.5 3.9 6.6 0.7 2.3 1 1 1 2 2 2 0 MIF4G like Myosin_tail_1 PF01576.14 gi|119720640|ref|YP_921135.1| - 3.2 5.3 17.2 0.06 11.0 6.7 1.8 2 1 0 2 2 1 0 Myosin tail GreA_GreB_N PF03449.10 gi|119720640|ref|YP_921135.1| - 3.3 7.8 9.9 19 5.3 0.1 4.8 3 2 1 5 5 5 0 Transcription elongation factor, N-terminal DUF2997 PF11211.3 gi|119720640|ref|YP_921135.1| - 4.3 6.7 6.2 5.7 6.4 1.1 3.4 2 1 1 3 3 2 0 Protein of unknown function (DUF2997) Med9 PF07544.8 gi|119720640|ref|YP_921135.1| - 5 6.9 8.3 2.8 7.7 1.4 3.1 2 1 3 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 PspB PF06667.7 gi|119720640|ref|YP_921135.1| - 5.3 7.0 9.2 4.7 7.2 0.2 3.6 2 1 3 5 5 3 0 Phage shock protein B DUF241 PF03087.9 gi|119720640|ref|YP_921135.1| - 6.3 6.2 9.7 16 4.8 0.8 3.7 1 1 2 4 4 4 0 Arabidopsis protein of unknown function Polysacc_synt PF01943.12 gi|119720641|ref|YP_921136.1| - 1.5e-24 86.7 14.4 1.5e-24 86.7 10.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|119720641|ref|YP_921136.1| - 9.4e-17 61.3 31.4 9.4e-17 61.3 21.8 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|119720641|ref|YP_921136.1| - 1.6e-10 40.9 8.0 1.6e-10 40.9 5.5 4.1 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain CbiM PF01891.11 gi|119720642|ref|YP_921137.1| - 1.6e-65 220.5 19.3 1.8e-65 220.4 13.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|119720642|ref|YP_921137.1| - 0.023 14.6 14.8 0.053 13.4 10.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) DUF1757 PF08560.5 gi|119720642|ref|YP_921137.1| - 1.8 8.2 5.4 9.5 5.8 0.4 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1757) PDGLE PF13190.1 gi|119720643|ref|YP_921138.1| - 1.2e-11 44.1 1.5 1.6e-11 43.7 1.1 1.1 1 0 0 1 1 1 1 PDGLE domain PepSY_TM_2 PF13703.1 gi|119720643|ref|YP_921138.1| - 0.16 12.1 3.7 6.5 7.0 0.4 2.1 2 0 0 2 2 2 0 PepSY-associated TM helix DUF2374 PF09574.5 gi|119720643|ref|YP_921138.1| - 1.5 8.5 5.0 0.23 11.1 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (Duf2374) CbiQ PF02361.11 gi|119720644|ref|YP_921139.1| - 1.6e-11 44.2 7.5 2.9e-11 43.3 5.2 1.5 1 1 0 1 1 1 1 Cobalt transport protein DUF3792 PF12670.2 gi|119720644|ref|YP_921139.1| - 3.6 7.4 7.3 0.19 11.5 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) ABC_tran PF00005.22 gi|119720645|ref|YP_921140.1| - 4.2e-33 114.5 0.0 6e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720645|ref|YP_921140.1| - 1.5e-15 57.9 0.0 2.2e-07 31.1 0.0 2.0 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|119720645|ref|YP_921140.1| - 1.1e-05 24.9 0.2 2e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|119720645|ref|YP_921140.1| - 3.1e-05 23.4 0.5 4.5e-05 22.9 0.3 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720645|ref|YP_921140.1| - 9.9e-05 21.6 0.0 0.067 12.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|119720645|ref|YP_921140.1| - 0.00045 20.6 0.0 0.00067 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|119720645|ref|YP_921140.1| - 0.00062 19.4 1.4 0.011 15.4 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain SRP54 PF00448.17 gi|119720645|ref|YP_921140.1| - 0.00076 18.9 0.0 0.0018 17.7 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|119720645|ref|YP_921140.1| - 0.0018 18.2 1.9 0.0044 17.0 1.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|119720645|ref|YP_921140.1| - 0.0043 16.7 0.2 0.0092 15.6 0.1 1.6 1 1 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|119720645|ref|YP_921140.1| - 0.0056 16.5 0.0 0.017 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|119720645|ref|YP_921140.1| - 0.0098 15.8 0.2 0.013 15.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|119720645|ref|YP_921140.1| - 0.015 14.9 0.3 0.024 14.2 0.2 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|119720645|ref|YP_921140.1| - 0.02 15.1 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|119720645|ref|YP_921140.1| - 0.024 14.5 0.0 0.1 12.5 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|119720645|ref|YP_921140.1| - 0.025 14.0 0.0 0.18 11.1 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|119720645|ref|YP_921140.1| - 0.028 15.2 0.2 0.068 13.9 0.1 1.9 2 1 0 2 2 1 0 AAA domain Zeta_toxin PF06414.7 gi|119720645|ref|YP_921140.1| - 0.035 13.2 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|119720645|ref|YP_921140.1| - 0.041 13.7 0.0 0.1 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain RecA PF00154.16 gi|119720645|ref|YP_921140.1| - 0.045 12.7 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_22 PF13401.1 gi|119720645|ref|YP_921140.1| - 0.06 13.4 0.1 0.099 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|119720645|ref|YP_921140.1| - 0.07 12.5 0.1 0.15 11.4 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|119720645|ref|YP_921140.1| - 0.078 12.6 0.2 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|119720645|ref|YP_921140.1| - 0.081 12.6 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|119720645|ref|YP_921140.1| - 0.096 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|119720645|ref|YP_921140.1| - 0.1 12.0 0.4 0.18 11.2 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|119720645|ref|YP_921140.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|119720645|ref|YP_921140.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|119720645|ref|YP_921140.1| - 0.14 12.4 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|119720645|ref|YP_921140.1| - 0.2 10.2 0.3 0.3 9.6 0.2 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Glycos_transf_1 PF00534.15 gi|119720646|ref|YP_921141.1| - 2.4e-21 75.9 0.0 4.4e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720646|ref|YP_921141.1| - 8.2e-17 61.6 0.0 3.4e-16 59.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|119720647|ref|YP_921142.1| - 3.2e-30 104.8 0.0 5.6e-30 104.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720647|ref|YP_921142.1| - 4.9e-16 59.0 0.0 7.4e-15 55.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|119720647|ref|YP_921142.1| - 3.5e-07 30.4 0.0 1.2e-06 28.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119720647|ref|YP_921142.1| - 5.3e-07 29.9 6.0 6.1e-07 29.7 3.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|119720647|ref|YP_921142.1| - 1.5e-06 28.0 0.1 2.6e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|119720648|ref|YP_921143.1| - 5.6e-18 65.1 0.0 9.2e-18 64.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|119720648|ref|YP_921143.1| - 3.8e-17 62.8 0.2 1.7e-16 60.7 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|119720648|ref|YP_921143.1| - 1.7e-07 31.1 0.0 2.9e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|119720648|ref|YP_921143.1| - 2.6e-05 23.4 0.0 3.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|119720649|ref|YP_921144.1| - 3.1e-40 137.4 0.0 4.2e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720649|ref|YP_921144.1| - 9e-24 84.1 0.0 1.9e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|119720649|ref|YP_921144.1| - 5.8e-18 64.9 0.0 1.1e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|119720649|ref|YP_921144.1| - 1.7e-17 64.0 15.2 2.5e-15 56.9 7.2 3.5 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|119720649|ref|YP_921144.1| - 2.6e-12 46.8 0.4 5.6e-12 45.7 0.2 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Epimerase_2 PF02350.14 gi|119720649|ref|YP_921144.1| - 0.00055 18.8 0.0 0.00085 18.1 0.0 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_5 PF08323.6 gi|119720649|ref|YP_921144.1| - 0.0006 19.3 1.2 0.087 12.3 0.1 2.9 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|119720649|ref|YP_921144.1| - 0.00073 19.3 0.0 0.003 17.3 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.8 gi|119720649|ref|YP_921144.1| - 0.13 10.5 0.0 0.2 9.8 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase PGDYG PF14083.1 gi|119720650|ref|YP_921145.1| - 0.056 13.8 0.0 0.075 13.3 0.0 1.2 1 0 0 1 1 1 0 PGDYG protein DUF58 PF01882.13 gi|119720651|ref|YP_921146.1| - 3.1e-17 62.4 0.1 7.1e-17 61.3 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|119720651|ref|YP_921146.1| - 5.4e-07 28.9 0.0 1.4e-06 27.6 0.0 1.7 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein HrcA_DNA-bdg PF03444.10 gi|119720651|ref|YP_921146.1| - 0.047 13.1 0.1 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AAA_3 PF07726.6 gi|119720653|ref|YP_921148.1| - 7.6e-54 180.8 0.2 8e-53 177.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|119720653|ref|YP_921148.1| - 1.5e-12 47.3 0.0 6.1e-12 45.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|119720653|ref|YP_921148.1| - 9.7e-05 22.5 0.0 0.00049 20.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|119720653|ref|YP_921148.1| - 0.00032 19.9 0.5 0.0035 16.5 0.1 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|119720653|ref|YP_921148.1| - 0.001 17.9 0.0 2.5 6.8 0.0 3.1 3 0 0 3 3 3 2 MCM2/3/5 family AAA_17 PF13207.1 gi|119720653|ref|YP_921148.1| - 0.0018 19.1 0.0 0.0088 16.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|119720653|ref|YP_921148.1| - 0.002 17.2 0.3 0.02 13.9 0.1 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|119720653|ref|YP_921148.1| - 0.0055 16.2 0.1 0.026 13.9 0.1 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|119720653|ref|YP_921148.1| - 0.046 13.7 0.0 0.094 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|119720653|ref|YP_921148.1| - 0.091 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|119720654|ref|YP_921149.1| - 9.4e-23 81.0 0.0 1.6e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720654|ref|YP_921149.1| - 6.3e-14 52.6 0.7 1.6e-08 34.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|119720654|ref|YP_921149.1| - 0.00012 21.3 0.0 0.0014 17.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|119720654|ref|YP_921149.1| - 0.001 18.3 0.2 0.83 8.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|119720654|ref|YP_921149.1| - 0.0022 17.4 0.1 0.0054 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|119720654|ref|YP_921149.1| - 0.0028 17.2 0.0 0.0046 16.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|119720654|ref|YP_921149.1| - 0.0051 16.2 0.1 0.0092 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|119720654|ref|YP_921149.1| - 0.0051 16.5 0.5 0.0099 15.5 0.4 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|119720654|ref|YP_921149.1| - 0.0061 16.0 0.2 0.0095 15.3 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|119720654|ref|YP_921149.1| - 0.0094 15.5 0.1 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119720654|ref|YP_921149.1| - 0.0098 15.8 0.1 0.021 14.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|119720654|ref|YP_921149.1| - 0.017 13.8 0.3 0.029 13.1 0.2 1.3 1 0 0 1 1 1 0 ArgK protein AAA_22 PF13401.1 gi|119720654|ref|YP_921149.1| - 0.022 14.8 0.1 0.079 13.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|119720654|ref|YP_921149.1| - 0.031 13.7 0.2 0.055 13.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|119720654|ref|YP_921149.1| - 0.041 14.7 0.1 0.1 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|119720654|ref|YP_921149.1| - 0.043 14.1 0.1 0.064 13.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|119720654|ref|YP_921149.1| - 0.059 13.1 1.2 0.18 11.5 0.8 1.9 1 1 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|119720654|ref|YP_921149.1| - 0.099 11.5 0.0 0.35 9.7 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|119720654|ref|YP_921149.1| - 0.12 12.0 1.0 0.22 11.2 0.4 1.6 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|119720654|ref|YP_921149.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane_4 PF12730.2 gi|119720655|ref|YP_921150.1| - 0.00049 19.3 19.2 0.00079 18.6 13.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|119720655|ref|YP_921150.1| - 0.021 13.6 19.1 0.042 12.6 13.3 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|119720655|ref|YP_921150.1| - 0.13 11.5 5.0 0.31 10.3 3.5 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein VWA_2 PF13519.1 gi|119720657|ref|YP_921152.1| - 2.3e-31 109.2 0.0 2.9e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|119720657|ref|YP_921152.1| - 8.4e-12 45.1 0.0 1.2e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|119720657|ref|YP_921152.1| - 7.7e-07 28.4 0.0 1.4e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.1 gi|119720657|ref|YP_921152.1| - 9.9e-05 22.0 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|119720657|ref|YP_921152.1| - 0.00016 21.5 0.0 0.0004 20.2 0.0 1.6 1 1 0 1 1 1 1 vWA found in TerF C terminus BatA PF07584.6 gi|119720657|ref|YP_921152.1| - 0.0087 16.2 4.4 0.036 14.2 1.0 2.6 2 1 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|119720658|ref|YP_921153.1| - 2.3e-20 73.3 0.0 3.6e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|119720658|ref|YP_921153.1| - 1.3e-12 47.8 0.0 1.7e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|119720658|ref|YP_921153.1| - 3.3e-05 23.1 0.0 5.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.1 gi|119720658|ref|YP_921153.1| - 0.084 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Glyco_hydro_17 PF00332.13 gi|119720658|ref|YP_921153.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 17 HTH_36 PF13730.1 gi|119720659|ref|YP_921154.1| - 0.015 15.3 0.5 0.65 10.1 0.1 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain NMT1_2 PF13379.1 gi|119720659|ref|YP_921154.1| - 0.019 14.3 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family Cast PF10174.4 gi|119720660|ref|YP_921155.1| - 1.2e-05 23.6 20.4 0.00053 18.1 8.6 2.2 1 1 1 2 2 2 2 RIM-binding protein of the cytomatrix active zone MCPsignal PF00015.16 gi|119720660|ref|YP_921155.1| - 7.6e-05 22.3 4.7 0.0015 18.1 2.2 2.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain APG6 PF04111.7 gi|119720660|ref|YP_921155.1| - 9.7e-05 21.5 29.0 0.0077 15.3 9.9 2.2 1 1 1 2 2 2 2 Autophagy protein Apg6 Spc7 PF08317.6 gi|119720660|ref|YP_921155.1| - 9.7e-05 21.1 15.1 0.00015 20.5 10.5 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein PTRF_SDPR PF15237.1 gi|119720660|ref|YP_921155.1| - 0.00053 19.4 8.0 0.011 15.1 2.1 2.3 1 1 1 2 2 2 1 PTRF/SDPR family ALIX_LYPXL_bnd PF13949.1 gi|119720660|ref|YP_921155.1| - 0.0012 17.8 13.1 0.0062 15.5 1.3 2.7 1 1 1 2 2 2 1 ALIX V-shaped domain binding to HIV Laminin_I PF06008.9 gi|119720660|ref|YP_921155.1| - 0.0013 18.1 11.3 0.0027 17.0 7.6 1.6 1 1 0 1 1 1 1 Laminin Domain I DUF972 PF06156.8 gi|119720660|ref|YP_921155.1| - 0.0025 18.1 15.4 0.58 10.5 3.1 3.0 1 1 1 2 2 2 2 Protein of unknown function (DUF972) TMF_DNA_bd PF12329.3 gi|119720660|ref|YP_921155.1| - 0.0026 17.5 32.8 0.061 13.1 7.6 3.5 3 1 1 4 4 3 2 TATA element modulatory factor 1 DNA binding ATG16 PF08614.6 gi|119720660|ref|YP_921155.1| - 0.004 16.9 19.6 0.1 12.4 4.6 3.0 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) DUF948 PF06103.6 gi|119720660|ref|YP_921155.1| - 0.0054 16.5 3.5 1.1 9.1 0.1 4.1 2 1 2 4 4 4 1 Bacterial protein of unknown function (DUF948) RmuC PF02646.11 gi|119720660|ref|YP_921155.1| - 0.0055 15.5 7.3 0.32 9.7 0.3 2.5 1 1 2 3 3 3 2 RmuC family COG2 PF06148.6 gi|119720660|ref|YP_921155.1| - 0.0073 16.1 13.1 0.52 10.1 1.0 4.0 2 1 2 4 4 4 3 COG (conserved oligomeric Golgi) complex component, COG2 Prominin PF05478.6 gi|119720660|ref|YP_921155.1| - 0.0075 13.8 1.6 0.01 13.4 1.1 1.2 1 0 0 1 1 1 1 Prominin AAA_13 PF13166.1 gi|119720660|ref|YP_921155.1| - 0.0096 14.4 10.6 0.014 13.9 7.3 1.3 1 0 0 1 1 1 1 AAA domain DUF2968 PF11180.3 gi|119720660|ref|YP_921155.1| - 0.011 15.0 9.2 0.082 12.2 3.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) EzrA PF06160.7 gi|119720660|ref|YP_921155.1| - 0.012 13.8 17.2 0.04 12.1 11.9 1.8 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA ERM PF00769.14 gi|119720660|ref|YP_921155.1| - 0.013 15.0 28.8 0.22 11.0 17.8 2.3 1 1 1 2 2 2 0 Ezrin/radixin/moesin family AAA_27 PF13514.1 gi|119720660|ref|YP_921155.1| - 0.014 13.0 14.1 0.019 12.6 9.7 1.1 1 0 0 1 1 1 0 AAA domain Transposase_22 PF02994.9 gi|119720660|ref|YP_921155.1| - 0.031 12.7 25.3 0.067 11.6 8.3 2.3 1 1 1 2 2 2 0 L1 transposable element Snapin_Pallidin PF14712.1 gi|119720660|ref|YP_921155.1| - 0.037 14.3 8.9 1.5 9.1 0.4 3.8 1 1 0 2 2 2 0 Snapin/Pallidin FCD PF07729.7 gi|119720660|ref|YP_921155.1| - 0.061 13.6 1.6 0.47 10.7 0.1 2.8 2 1 0 2 2 2 0 FCD domain Mod_r PF07200.8 gi|119720660|ref|YP_921155.1| - 0.067 13.1 13.8 0.12 12.3 5.9 2.4 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.17 gi|119720660|ref|YP_921155.1| - 0.091 12.7 23.0 0.41 10.6 5.0 2.9 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain IF-2B PF01008.12 gi|119720660|ref|YP_921155.1| - 0.1 11.5 3.3 1.8 7.5 1.7 2.5 1 1 1 2 2 2 0 Initiation factor 2 subunit family FUSC PF04632.7 gi|119720660|ref|YP_921155.1| - 0.1 11.0 0.3 0.13 10.6 0.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2353 PF09789.4 gi|119720660|ref|YP_921155.1| - 0.13 11.4 13.1 0.098 11.9 6.6 2.0 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Occludin_ELL PF07303.8 gi|119720660|ref|YP_921155.1| - 0.13 12.9 11.9 1.1 10.0 0.7 3.0 1 1 2 3 3 3 0 Occludin homology domain WEMBL PF05701.6 gi|119720660|ref|YP_921155.1| - 0.14 10.5 24.9 0.089 11.2 15.4 1.7 1 1 1 2 2 2 0 Weak chloroplast movement under blue light BLOC1_2 PF10046.4 gi|119720660|ref|YP_921155.1| - 0.17 12.0 12.0 14 5.8 2.4 4.0 2 1 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cauli_DNA-bind PF03310.8 gi|119720660|ref|YP_921155.1| - 0.19 11.6 5.9 7 6.5 0.1 3.0 1 1 2 3 3 3 0 Caulimovirus DNA-binding protein GAS PF13851.1 gi|119720660|ref|YP_921155.1| - 0.2 10.8 25.2 0.02 14.0 13.5 2.0 2 1 0 2 2 1 0 Growth-arrest specific micro-tubule binding DUF342 PF03961.8 gi|119720660|ref|YP_921155.1| - 0.28 9.5 18.3 1.2 7.4 4.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF342) CENP-F_leu_zip PF10473.4 gi|119720660|ref|YP_921155.1| - 0.3 10.9 29.5 0.16 11.8 16.8 2.4 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Sec5 PF15469.1 gi|119720660|ref|YP_921155.1| - 0.3 10.8 18.3 2.9 7.5 5.4 2.6 1 1 1 2 2 2 0 Exocyst complex component Sec5 bPH_6 PF10756.4 gi|119720660|ref|YP_921155.1| - 0.32 10.9 7.9 1.5e+03 -0.9 5.5 4.6 1 1 0 1 1 1 0 Bacterial PH domain zf-C4H2 PF10146.4 gi|119720660|ref|YP_921155.1| - 0.32 10.9 21.6 2.9 7.8 10.1 2.3 1 1 1 2 2 2 0 Zinc finger-containing protein DUF4446 PF14584.1 gi|119720660|ref|YP_921155.1| - 0.37 10.6 10.7 1.7 8.4 0.9 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) TPR_MLP1_2 PF07926.7 gi|119720660|ref|YP_921155.1| - 0.45 10.2 21.9 6.7 6.4 15.2 2.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Phage_H_T_join PF05521.6 gi|119720660|ref|YP_921155.1| - 0.48 10.7 11.7 0.93 9.8 0.6 3.2 1 1 2 3 3 3 0 Phage head-tail joining protein Atg14 PF10186.4 gi|119720660|ref|YP_921155.1| - 0.56 9.0 17.0 0.96 8.3 11.8 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Barstar PF01337.13 gi|119720660|ref|YP_921155.1| - 0.57 10.0 11.9 2.4 8.0 1.3 3.1 1 1 2 3 3 3 0 Barstar (barnase inhibitor) BicD PF09730.4 gi|119720660|ref|YP_921155.1| - 0.57 8.4 24.0 0.098 10.9 8.0 2.2 1 1 1 2 2 2 0 Microtubule-associated protein Bicaudal-D COG6 PF06419.6 gi|119720660|ref|YP_921155.1| - 0.68 7.9 7.7 0.58 8.2 1.7 2.1 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 DUF4201 PF13870.1 gi|119720660|ref|YP_921155.1| - 0.79 9.1 20.9 0.78 9.1 2.0 2.7 2 1 1 3 3 2 0 Domain of unknown function (DUF4201) Fib_alpha PF08702.5 gi|119720660|ref|YP_921155.1| - 0.89 9.6 7.7 2.1 8.4 5.0 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|119720660|ref|YP_921155.1| - 1 8.9 27.2 1.8 8.1 17.5 2.1 1 1 1 2 2 2 0 IncA protein Spc24 PF08286.6 gi|119720660|ref|YP_921155.1| - 1.4 8.6 16.1 7.2 6.3 5.1 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.1 gi|119720660|ref|YP_921155.1| - 1.5 8.8 31.5 2.4 8.1 16.9 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) CCDC155 PF14662.1 gi|119720660|ref|YP_921155.1| - 1.7 8.2 25.5 10 5.6 10.6 3.0 2 1 1 3 3 2 0 Coiled-coil region of CCDC155 DivIC PF04977.10 gi|119720660|ref|YP_921155.1| - 1.8 8.1 29.9 0.46 10.0 3.2 4.1 2 1 3 5 5 4 0 Septum formation initiator DUF1664 PF07889.7 gi|119720660|ref|YP_921155.1| - 2.1 8.1 13.9 7.3 6.4 2.6 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) CP12 PF02672.10 gi|119720660|ref|YP_921155.1| - 2.7 8.5 22.3 3.1 8.3 2.7 4.1 1 1 1 3 3 3 0 CP12 domain V_ATPase_I PF01496.14 gi|119720660|ref|YP_921155.1| - 2.7 5.7 14.8 3.4 5.3 10.1 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family PP_kinase_N PF13089.1 gi|119720660|ref|YP_921155.1| - 3.5 7.7 6.6 52 3.9 2.9 3.1 1 1 1 2 2 2 0 Polyphosphate kinase N-terminal domain DegS PF05384.6 gi|119720660|ref|YP_921155.1| - 4.2 6.5 16.7 92 2.2 11.5 2.7 1 1 0 1 1 1 0 Sensor protein DegS Gcd10p PF04189.8 gi|119720660|ref|YP_921155.1| - 5.2 6.1 13.2 2.4 7.2 4.1 2.3 1 1 1 2 2 2 0 Gcd10p family DUF4023 PF13215.1 gi|119720660|ref|YP_921155.1| - 5.3 6.8 6.2 56 3.6 0.1 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF4023) LUC7 PF03194.10 gi|119720660|ref|YP_921155.1| - 7.5 6.0 14.5 24 4.3 9.9 2.0 1 1 0 1 1 1 0 LUC7 N_terminus DUF4509 PF14970.1 gi|119720660|ref|YP_921155.1| - 8.8 5.9 10.9 36 3.9 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4509) DUF1204 PF06721.6 gi|119720660|ref|YP_921155.1| - 9.6 5.3 13.4 8.8 5.5 0.0 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF1204) DUF421 PF04239.7 gi|119720662|ref|YP_921157.1| - 0.06 12.8 0.2 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF421) DUF87 PF01935.12 gi|119720662|ref|YP_921157.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 Radical_SAM PF04055.16 gi|119720663|ref|YP_921158.1| - 3.5e-14 53.3 0.0 5.3e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|119720663|ref|YP_921158.1| - 0.089 12.8 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1272 PF06906.6 gi|119720663|ref|YP_921158.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF790 PF05626.6 gi|119720664|ref|YP_921159.1| - 1.4e-103 346.3 0.0 1.7e-103 346.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) PASTA PF03793.14 gi|119720664|ref|YP_921159.1| - 0.006 16.2 0.1 0.036 13.7 0.0 2.3 2 1 0 2 2 2 1 PASTA domain Sigma70_r3 PF04539.11 gi|119720664|ref|YP_921159.1| - 0.052 13.4 0.6 3 7.8 0.0 2.6 2 0 0 2 2 2 0 Sigma-70 region 3 ResIII PF04851.10 gi|119720665|ref|YP_921160.1| - 1e-25 90.6 0.0 1e-23 84.1 0.0 2.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|119720665|ref|YP_921160.1| - 9.8e-18 63.8 0.1 4.2e-16 58.5 0.1 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|119720665|ref|YP_921160.1| - 1.4e-10 40.9 0.0 1.9e-09 37.2 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|119720665|ref|YP_921160.1| - 1.3e-07 30.7 0.0 7.4e-07 28.2 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|119720665|ref|YP_921160.1| - 0.0044 16.7 3.6 0.064 13.0 0.1 2.8 3 0 0 3 3 3 1 Part of AAA domain Metal_resist PF13801.1 gi|119720665|ref|YP_921160.1| - 0.029 14.3 3.4 0.045 13.7 1.1 2.1 2 0 0 2 2 2 0 Heavy-metal resistance AAA_30 PF13604.1 gi|119720665|ref|YP_921160.1| - 0.032 13.7 0.0 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|119720665|ref|YP_921160.1| - 0.075 12.4 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein PALP PF00291.20 gi|119720665|ref|YP_921160.1| - 0.11 11.7 0.2 8.1 5.5 0.0 2.2 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme DUF134 PF02001.11 gi|119720666|ref|YP_921161.1| - 5.3e-24 84.1 0.0 6.4e-24 83.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.11 gi|119720666|ref|YP_921161.1| - 3e-07 29.6 0.2 4.2e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|119720666|ref|YP_921161.1| - 1.6e-06 27.4 0.1 2.2e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|119720666|ref|YP_921161.1| - 3.1e-05 23.4 0.1 5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|119720666|ref|YP_921161.1| - 0.00061 19.7 0.1 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|119720666|ref|YP_921161.1| - 0.0014 18.7 0.7 0.0023 18.1 0.5 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|119720666|ref|YP_921161.1| - 0.003 17.7 0.0 0.0056 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|119720666|ref|YP_921161.1| - 0.013 15.2 0.1 0.017 14.8 0.1 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_AsnC-type PF13404.1 gi|119720666|ref|YP_921161.1| - 0.028 13.9 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_3 PF01381.17 gi|119720666|ref|YP_921161.1| - 0.04 13.7 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix HTH_38 PF13936.1 gi|119720666|ref|YP_921161.1| - 0.086 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|119720666|ref|YP_921161.1| - 0.091 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.1 gi|119720666|ref|YP_921161.1| - 0.092 12.8 0.3 0.3 11.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix Occludin_ELL PF07303.8 gi|119720667|ref|YP_921162.1| - 0.0052 17.4 0.0 0.0062 17.2 0.0 1.1 1 0 0 1 1 1 1 Occludin homology domain IncA PF04156.9 gi|119720667|ref|YP_921162.1| - 0.0066 16.0 1.5 0.008 15.7 1.1 1.0 1 0 0 1 1 1 1 IncA protein Prefoldin_2 PF01920.15 gi|119720667|ref|YP_921162.1| - 0.007 16.1 0.7 0.0085 15.8 0.5 1.1 1 0 0 1 1 1 1 Prefoldin subunit Dynamitin PF04912.9 gi|119720667|ref|YP_921162.1| - 0.022 13.5 0.2 0.025 13.3 0.1 1.0 1 0 0 1 1 1 0 Dynamitin CCDC-167 PF15188.1 gi|119720667|ref|YP_921162.1| - 0.052 13.5 2.3 0.068 13.1 1.6 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 Cortex-I_coil PF09304.5 gi|119720667|ref|YP_921162.1| - 0.052 13.5 0.3 0.064 13.3 0.2 1.1 1 0 0 1 1 1 0 Cortexillin I, coiled coil Lebercilin PF15619.1 gi|119720667|ref|YP_921162.1| - 0.065 12.6 1.6 0.076 12.4 1.1 1.0 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Cut12 PF11500.3 gi|119720667|ref|YP_921162.1| - 0.084 12.5 0.2 0.1 12.2 0.2 1.1 1 0 0 1 1 1 0 Spindle pole body formation-associated protein APG6 PF04111.7 gi|119720667|ref|YP_921162.1| - 0.097 11.7 0.2 0.12 11.4 0.1 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF3450 PF11932.3 gi|119720667|ref|YP_921162.1| - 0.12 11.6 0.0 0.13 11.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Med21 PF11221.3 gi|119720667|ref|YP_921162.1| - 0.16 11.9 1.0 0.2 11.6 0.7 1.1 1 0 0 1 1 1 0 Subunit 21 of Mediator complex cwf21 PF08312.7 gi|119720667|ref|YP_921162.1| - 4.5 7.2 10.1 11 6.0 7.0 1.6 1 1 0 1 1 1 0 cwf21 domain RBD-FIP PF09457.5 gi|119720667|ref|YP_921162.1| - 8.6 6.2 8.6 1.3 8.9 2.0 2.0 2 0 0 2 2 2 0 FIP domain Gp_dh_N PF00044.19 gi|119720668|ref|YP_921163.1| - 2.7e-10 40.4 0.0 2.2e-09 37.4 0.0 2.1 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|119720668|ref|YP_921163.1| - 9.6e-08 31.6 0.0 1.3e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|119720668|ref|YP_921163.1| - 2.9e-05 23.9 0.1 9.7e-05 22.2 0.1 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Pyr_redox_2 PF07992.9 gi|119720669|ref|YP_921164.1| - 4.4e-23 82.2 0.0 8.7e-22 77.9 0.0 3.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|119720669|ref|YP_921164.1| - 5.6e-14 52.3 0.4 2.4e-06 27.8 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|119720669|ref|YP_921164.1| - 6.3e-09 36.1 0.0 0.0034 17.4 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|119720669|ref|YP_921164.1| - 9.5e-09 35.1 0.0 2.3e-07 30.7 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|119720669|ref|YP_921164.1| - 7e-07 28.4 0.1 0.0054 15.6 0.0 2.9 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|119720669|ref|YP_921164.1| - 5.6e-05 21.7 0.1 0.0003 19.3 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|119720669|ref|YP_921164.1| - 0.00012 21.3 0.6 0.00039 19.5 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|119720669|ref|YP_921164.1| - 0.00012 21.1 0.4 0.075 11.9 0.0 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|119720669|ref|YP_921164.1| - 0.0002 20.9 0.0 0.00063 19.3 0.0 1.7 2 0 0 2 2 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|119720669|ref|YP_921164.1| - 0.00061 18.9 0.0 0.16 11.0 0.0 2.5 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|119720669|ref|YP_921164.1| - 0.0014 18.2 0.1 0.97 9.0 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|119720669|ref|YP_921164.1| - 0.0031 16.6 0.0 0.0092 15.1 0.0 1.7 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|119720669|ref|YP_921164.1| - 0.0075 15.3 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Shikimate_DH PF01488.15 gi|119720669|ref|YP_921164.1| - 0.0089 16.1 0.1 7 6.7 0.0 2.7 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase YjeF_N PF03853.10 gi|119720669|ref|YP_921164.1| - 0.012 15.2 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 YjeF-related protein N-terminus NAD_binding_10 PF13460.1 gi|119720669|ref|YP_921164.1| - 0.014 15.4 0.2 3 7.7 0.0 2.8 2 1 0 2 2 2 0 NADH(P)-binding NAD_binding_9 PF13454.1 gi|119720669|ref|YP_921164.1| - 0.022 14.5 0.8 0.23 11.2 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding DJ-1_PfpI PF01965.19 gi|119720669|ref|YP_921164.1| - 0.035 13.5 0.0 0.34 10.3 0.0 2.5 3 0 0 3 3 3 0 DJ-1/PfpI family GIDA PF01134.17 gi|119720669|ref|YP_921164.1| - 0.068 12.0 0.1 0.54 9.0 0.0 2.4 3 0 0 3 3 3 0 Glucose inhibited division protein A CPSase_L_chain PF00289.17 gi|119720669|ref|YP_921164.1| - 0.076 13.1 0.0 16 5.6 0.0 2.5 2 1 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|119720669|ref|YP_921164.1| - 0.076 12.7 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amino_oxidase PF01593.19 gi|119720669|ref|YP_921164.1| - 0.087 11.8 0.0 5.5 5.9 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase K_oxygenase PF13434.1 gi|119720669|ref|YP_921164.1| - 0.098 11.5 0.0 6.7 5.5 0.0 3.2 4 0 0 4 4 4 0 L-lysine 6-monooxygenase (NADPH-requiring) Polysacc_synt_3 PF13440.1 gi|119720670|ref|YP_921165.1| - 2.1e-13 50.3 31.4 2.1e-13 50.3 21.8 3.4 2 2 1 3 3 3 2 Polysaccharide biosynthesis protein NUDIX PF00293.23 gi|119720671|ref|YP_921166.1| - 1.2e-17 63.7 0.6 1.6e-17 63.4 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain DUF217 PF02697.9 gi|119720672|ref|YP_921167.1| - 0.0002 21.5 0.0 0.00024 21.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 adh_short PF00106.20 gi|119720673|ref|YP_921168.1| - 1.2e-20 74.0 0.1 1.5e-20 73.7 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|119720673|ref|YP_921168.1| - 1.2e-08 35.0 0.0 1.6e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|119720673|ref|YP_921168.1| - 1.2e-05 25.3 0.0 3.3e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding KR PF08659.5 gi|119720673|ref|YP_921168.1| - 0.00017 21.3 0.0 0.00031 20.4 0.0 1.5 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|119720673|ref|YP_921168.1| - 0.0021 17.5 0.0 0.0097 15.3 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Peptidase_MA_2 PF13485.1 gi|119720674|ref|YP_921169.1| - 0.00088 19.3 0.4 0.002 18.1 0.3 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily Big_1 PF02369.11 gi|119720674|ref|YP_921169.1| - 0.35 10.7 7.6 0.16 11.8 0.5 3.6 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) SPOUT_MTase_2 PF14419.1 gi|119720675|ref|YP_921170.1| - 1.6e-70 235.8 0.3 2.5e-70 235.1 0.2 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|119720675|ref|YP_921170.1| - 1.9e-26 92.6 0.3 4e-26 91.6 0.2 1.5 1 0 0 1 1 1 1 THUMP domain DUF531 PF04407.7 gi|119720675|ref|YP_921170.1| - 0.081 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF531) DUF3107 PF11305.3 gi|119720677|ref|YP_921172.1| - 0.001 18.9 0.1 0.0023 17.7 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3107) ADIP PF11559.3 gi|119720677|ref|YP_921172.1| - 0.0087 15.9 1.7 2.1 8.2 0.2 2.3 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding DUF812 PF05667.6 gi|119720677|ref|YP_921172.1| - 0.061 11.8 1.2 0.088 11.3 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) MscS_porin PF12795.2 gi|119720677|ref|YP_921172.1| - 0.091 12.0 8.9 0.24 10.6 1.9 2.3 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain Reo_sigmaC PF04582.7 gi|119720677|ref|YP_921172.1| - 0.62 9.1 8.2 1 8.4 1.5 2.3 1 1 1 2 2 2 0 Reovirus sigma C capsid protein CALCOCO1 PF07888.6 gi|119720677|ref|YP_921172.1| - 0.79 7.9 4.3 1.1 7.4 3.0 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like ABC_tran PF00005.22 gi|119720678|ref|YP_921173.1| - 2.4e-32 112.0 0.0 3.6e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720678|ref|YP_921173.1| - 3.3e-12 46.9 0.2 5.8e-09 36.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|119720678|ref|YP_921173.1| - 1.6e-06 27.5 0.3 0.0012 18.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|119720678|ref|YP_921173.1| - 3.4e-05 23.0 0.0 0.017 14.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|119720678|ref|YP_921173.1| - 0.00047 19.6 0.2 0.00096 18.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|119720678|ref|YP_921173.1| - 0.00049 18.6 0.1 0.18 10.2 0.0 2.7 2 1 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|119720678|ref|YP_921173.1| - 0.00081 18.8 0.0 0.0063 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|119720678|ref|YP_921173.1| - 0.0014 18.6 0.6 0.0028 17.6 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|119720678|ref|YP_921173.1| - 0.0048 16.7 0.1 0.04 13.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MutS_V PF00488.16 gi|119720678|ref|YP_921173.1| - 0.0049 16.3 0.0 1.3 8.3 0.0 2.1 2 0 0 2 2 2 1 MutS domain V T2SE PF00437.15 gi|119720678|ref|YP_921173.1| - 0.0087 14.9 0.4 0.095 11.5 0.1 2.1 1 1 0 2 2 2 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|119720678|ref|YP_921173.1| - 0.0092 15.1 0.1 0.017 14.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|119720678|ref|YP_921173.1| - 0.01 15.9 0.1 0.15 12.1 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|119720678|ref|YP_921173.1| - 0.013 15.8 1.8 0.045 14.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain SIS PF01380.17 gi|119720678|ref|YP_921173.1| - 0.017 14.7 0.0 0.23 11.0 0.0 2.4 3 0 0 3 3 2 0 SIS domain AAA_17 PF13207.1 gi|119720678|ref|YP_921173.1| - 0.042 14.6 0.0 0.11 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|119720678|ref|YP_921173.1| - 0.051 13.0 0.0 0.084 12.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|119720678|ref|YP_921173.1| - 0.058 13.6 0.0 0.39 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|119720678|ref|YP_921173.1| - 0.062 12.7 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|119720678|ref|YP_921173.1| - 0.067 12.7 0.2 0.16 11.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|119720678|ref|YP_921173.1| - 0.077 12.4 0.4 1.4 8.2 0.0 2.4 3 0 0 3 3 3 0 IstB-like ATP binding protein DLIC PF05783.6 gi|119720678|ref|YP_921173.1| - 0.1 11.2 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_19 PF13245.1 gi|119720678|ref|YP_921173.1| - 0.13 12.0 0.2 0.75 9.5 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|119720678|ref|YP_921173.1| - 0.17 11.7 0.1 0.32 10.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain HsbA PF12296.3 gi|119720678|ref|YP_921173.1| - 0.17 11.7 0.5 0.32 10.8 0.4 1.4 1 0 0 1 1 1 0 Hydrophobic surface binding protein A FtsX PF02687.16 gi|119720679|ref|YP_921174.1| - 4.4e-24 84.5 6.5 4.4e-24 84.5 4.5 2.2 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|119720679|ref|YP_921174.1| - 8.9e-23 81.0 1.5 8.9e-23 81.0 1.0 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain Methyltransf_11 PF08241.7 gi|119720680|ref|YP_921175.1| - 1.4e-13 51.1 0.0 2.1e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|119720680|ref|YP_921175.1| - 1.4e-05 24.5 0.0 2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.1 gi|119720680|ref|YP_921175.1| - 5.9e-05 22.7 0.1 0.00024 20.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|119720680|ref|YP_921175.1| - 0.0049 16.5 0.0 0.0058 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|119720680|ref|YP_921175.1| - 0.0061 16.8 0.1 0.014 15.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|119720680|ref|YP_921175.1| - 0.015 15.7 0.0 0.025 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|119720680|ref|YP_921175.1| - 0.029 14.3 0.2 0.038 14.0 0.2 1.4 1 1 0 1 1 1 0 Methyltransferase domain Phosphorylase PF00343.15 gi|119720681|ref|YP_921176.1| - 6.9e-12 44.0 0.7 2e-09 35.9 0.0 2.9 1 1 1 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|119720681|ref|YP_921176.1| - 9.1e-07 28.4 0.0 1.7e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|119720681|ref|YP_921176.1| - 0.00013 22.1 0.1 0.0011 19.1 0.0 2.5 3 1 1 4 4 4 1 Glycosyl transferases group 1 Zip PF02535.17 gi|119720682|ref|YP_921177.1| - 2.9e-25 88.9 19.5 1.5e-22 80.0 3.8 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|119720682|ref|YP_921177.1| - 0.00016 20.8 0.4 0.0021 17.1 0.1 2.3 1 1 1 2 2 2 1 E1-E2 ATPase Peptidase_M50 PF02163.17 gi|119720682|ref|YP_921177.1| - 0.04 12.8 0.0 0.057 12.3 0.0 1.2 1 1 0 1 1 1 0 Peptidase family M50 Rhomboid PF01694.17 gi|119720682|ref|YP_921177.1| - 0.81 9.7 16.4 0.55 10.2 1.1 2.7 1 1 1 2 2 2 0 Rhomboid family DUF650 PF04894.7 gi|119720684|ref|YP_921179.1| - 2.9e-97 325.4 0.0 3.5e-97 325.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|119720684|ref|YP_921179.1| - 5.7e-37 125.7 0.0 9.8e-37 124.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Radical_SAM PF04055.16 gi|119720685|ref|YP_921180.1| - 5.3e-14 52.7 0.0 7.6e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Gp37_Gp68 PF07505.6 gi|119720685|ref|YP_921180.1| - 0.0077 15.4 0.1 0.013 14.6 0.1 1.3 1 0 0 1 1 1 1 Phage protein Gp37/Gp68 Lsm_C PF14894.1 gi|119720685|ref|YP_921180.1| - 0.15 11.6 3.6 0.51 9.8 0.6 2.5 2 0 0 2 2 2 0 Lsm C-terminal DUF1848 PF08902.6 gi|119720685|ref|YP_921180.1| - 0.34 10.3 4.9 27 4.1 4.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) SWIM PF04434.12 gi|119720687|ref|YP_921182.1| - 0.076 12.5 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 SWIM zinc finger Acetyltransf_6 PF13480.1 gi|119720688|ref|YP_921183.1| - 0.003 17.5 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|119720688|ref|YP_921183.1| - 0.017 15.1 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family GDPD PF03009.12 gi|119720689|ref|YP_921184.1| - 1.1e-30 107.0 0.0 1.7e-29 103.1 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|119720689|ref|YP_921184.1| - 0.029 14.5 0.2 1.8 8.8 0.1 2.6 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Lon_C PF05362.8 gi|119720690|ref|YP_921185.1| - 3.4e-14 52.6 0.2 6.6e-14 51.7 0.1 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|119720690|ref|YP_921185.1| - 0.00011 21.7 0.0 0.00026 20.5 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase PTS_IIA PF02255.11 gi|119720691|ref|YP_921186.1| - 0.00019 21.2 8.5 0.055 13.3 0.5 2.9 3 0 0 3 3 3 2 PTS system, Lactose/Cellobiose specific IIA subunit DUF1771 PF08590.5 gi|119720691|ref|YP_921186.1| - 0.0021 18.0 9.2 0.033 14.1 0.2 3.9 4 2 0 4 4 4 2 Domain of unknown function (DUF1771) DUF4398 PF14346.1 gi|119720691|ref|YP_921186.1| - 0.019 15.0 4.4 0.019 15.0 3.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4398) YfdX PF10938.3 gi|119720691|ref|YP_921186.1| - 0.045 13.4 11.2 0.053 13.1 1.6 2.7 3 1 0 3 3 3 0 YfdX protein DBINO PF13892.1 gi|119720691|ref|YP_921186.1| - 0.16 12.0 10.8 0.23 11.5 0.3 3.2 3 0 0 3 3 3 0 DNA-binding domain PhoU PF01895.14 gi|119720691|ref|YP_921186.1| - 0.48 10.8 8.0 2.2 8.7 0.4 3.2 3 0 0 3 3 3 0 PhoU domain Rogdi_lz PF10259.4 gi|119720691|ref|YP_921186.1| - 0.52 9.3 10.5 0.091 11.8 0.8 2.9 2 1 0 3 3 3 0 Rogdi leucine zipper containing protein Cob_adeno_trans PF01923.13 gi|119720691|ref|YP_921186.1| - 1.2 8.8 13.2 0.88 9.3 4.7 3.1 1 1 3 4 4 4 0 Cobalamin adenosyltransferase Rbsn PF11464.3 gi|119720691|ref|YP_921186.1| - 2.4 7.7 7.8 17 5.0 0.0 3.6 3 0 0 3 3 3 0 Rabenosyn Rab binding domain PepSY_TM PF03929.11 gi|119720691|ref|YP_921186.1| - 3.5 8.2 5.8 5 7.7 1.3 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix Fer4_5 PF12801.2 gi|119720692|ref|YP_921187.1| - 6.9e-15 54.5 28.7 4.4e-10 39.1 2.6 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.22 gi|119720692|ref|YP_921187.1| - 7.8e-14 50.6 20.5 5.8e-10 38.3 2.9 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119720692|ref|YP_921187.1| - 5.2e-10 39.4 14.2 1.3e-08 34.9 7.9 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119720692|ref|YP_921187.1| - 1e-09 38.6 33.5 2.3e-07 31.0 9.1 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|119720692|ref|YP_921187.1| - 4.4e-08 32.6 13.9 8.5e-08 31.7 2.9 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119720692|ref|YP_921187.1| - 4.8e-08 32.6 13.2 4.8e-08 32.6 9.2 3.0 3 2 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119720692|ref|YP_921187.1| - 9.5e-07 28.3 3.4 9.5e-07 28.3 2.4 3.7 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|119720692|ref|YP_921187.1| - 3e-06 27.8 14.9 1.6e-05 25.5 1.3 3.7 3 2 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|119720692|ref|YP_921187.1| - 1.5e-05 24.7 12.7 1.5e-05 24.7 8.8 3.7 3 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|119720692|ref|YP_921187.1| - 8.7e-05 22.4 18.8 0.00024 21.0 9.2 3.3 3 2 0 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119720692|ref|YP_921187.1| - 0.0014 18.8 3.8 0.0014 18.8 2.6 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|119720692|ref|YP_921187.1| - 0.0085 16.5 6.0 0.0085 16.5 4.1 4.8 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|119720692|ref|YP_921187.1| - 0.025 15.1 10.0 0.065 13.8 1.1 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|119720692|ref|YP_921187.1| - 0.084 13.2 12.7 0.12 12.7 2.5 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|119720692|ref|YP_921187.1| - 0.094 12.6 9.3 0.11 12.4 5.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119720692|ref|YP_921187.1| - 0.22 11.9 21.6 0.11 12.9 3.0 3.9 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|119720692|ref|YP_921187.1| - 0.57 10.5 20.6 2.6 8.4 8.7 3.6 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|119720693|ref|YP_921188.1| - 9.2e-23 80.3 43.6 8.1e-13 48.5 8.1 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|119720693|ref|YP_921188.1| - 7.8e-21 72.7 37.1 2.7e-08 33.0 2.7 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|119720693|ref|YP_921188.1| - 1e-19 69.4 29.8 2e-07 30.5 1.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119720693|ref|YP_921188.1| - 1.8e-17 62.8 22.5 1.3e-11 44.0 7.5 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|119720693|ref|YP_921188.1| - 2.4e-17 62.9 20.3 2.3e-09 37.3 7.3 3.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119720693|ref|YP_921188.1| - 8.4e-15 53.7 34.5 3.7e-06 26.5 2.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|119720693|ref|YP_921188.1| - 3.3e-14 53.3 22.9 0.00019 22.1 1.0 4.3 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|119720693|ref|YP_921188.1| - 3.2e-13 49.4 23.3 1.3e-08 34.7 5.7 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119720693|ref|YP_921188.1| - 1.2e-12 47.4 22.7 7.1e-11 41.8 5.2 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|119720693|ref|YP_921188.1| - 1.4e-12 47.8 24.3 1.1e-05 25.7 0.0 4.3 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|119720693|ref|YP_921188.1| - 1.2e-10 41.1 43.2 0.0044 17.4 5.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|119720693|ref|YP_921188.1| - 7.6e-10 38.3 37.0 0.0039 17.4 2.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|119720693|ref|YP_921188.1| - 4.7e-09 36.4 21.1 0.012 15.9 0.2 4.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|119720693|ref|YP_921188.1| - 1.3e-07 32.1 24.2 0.0016 18.9 1.4 4.3 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|119720693|ref|YP_921188.1| - 0.00022 21.0 13.0 0.0025 17.6 5.5 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|119720693|ref|YP_921188.1| - 0.018 15.4 31.0 0.02 15.2 2.2 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain TauE PF01925.14 gi|119720693|ref|YP_921188.1| - 0.099 12.0 0.0 0.62 9.4 0.0 1.9 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE DUF678 PF05077.7 gi|119720693|ref|YP_921188.1| - 1.6 8.7 12.1 0.82 9.6 4.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Pur_DNA_glyco PF02245.11 gi|119720694|ref|YP_921189.1| - 1.6e-35 121.9 0.0 1.9e-35 121.6 0.0 1.1 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) ATP-cone PF03477.11 gi|119720695|ref|YP_921190.1| - 7.3e-09 35.9 0.6 8.4e-09 35.7 0.4 1.1 1 0 0 1 1 1 1 ATP cone domain KNOX1 PF03790.8 gi|119720695|ref|YP_921190.1| - 0.027 13.7 0.8 0.043 13.1 0.1 1.6 2 0 0 2 2 2 0 KNOX1 domain PBP_like_2 PF12849.2 gi|119720696|ref|YP_921191.1| - 6e-24 84.9 0.0 7.3e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|119720696|ref|YP_921191.1| - 5.1e-13 49.2 0.0 8.5e-13 48.4 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|119720696|ref|YP_921191.1| - 3e-06 26.4 0.1 6.8e-06 25.3 0.0 1.6 2 0 0 2 2 2 1 LysR substrate binding domain SBP_bac_1 PF01547.20 gi|119720696|ref|YP_921191.1| - 0.00029 20.6 2.6 0.0063 16.2 1.4 2.6 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|119720696|ref|YP_921191.1| - 0.00057 18.8 0.0 0.00089 18.2 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain tRNA_anti-like PF12869.2 gi|119720696|ref|YP_921191.1| - 0.073 12.5 0.1 0.12 11.7 0.1 1.4 1 0 0 1 1 1 0 tRNA_anti-like BPD_transp_1 PF00528.17 gi|119720697|ref|YP_921192.1| - 4.6e-11 42.5 13.1 6.5e-11 42.0 9.0 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|119720698|ref|YP_921193.1| - 1.4e-27 96.6 0.0 1.7e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|119720698|ref|YP_921193.1| - 3.3e-20 73.2 0.0 4e-11 43.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|119720698|ref|YP_921193.1| - 3e-10 39.7 0.0 5.3e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|119720698|ref|YP_921193.1| - 4e-06 27.2 0.0 5.6e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|119720698|ref|YP_921193.1| - 2e-05 24.7 0.0 0.00015 21.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|119720698|ref|YP_921193.1| - 3.9e-05 22.8 0.0 0.085 11.8 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|119720698|ref|YP_921193.1| - 7.8e-05 22.1 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|119720698|ref|YP_921193.1| - 9.5e-05 21.0 0.0 0.0043 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|119720698|ref|YP_921193.1| - 0.00016 21.5 0.1 0.0024 17.7 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|119720698|ref|YP_921193.1| - 0.0006 19.7 0.1 0.16 11.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|119720698|ref|YP_921193.1| - 0.00077 19.1 0.1 0.016 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|119720698|ref|YP_921193.1| - 0.0023 18.7 0.1 0.0033 18.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119720698|ref|YP_921193.1| - 0.0026 17.7 0.8 0.0083 16.1 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|119720698|ref|YP_921193.1| - 0.0029 17.3 0.1 0.017 14.8 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain Arch_ATPase PF01637.13 gi|119720698|ref|YP_921193.1| - 0.0029 17.3 0.0 0.0064 16.2 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|119720698|ref|YP_921193.1| - 0.0033 17.0 0.1 0.0088 15.7 0.0 1.8 2 0 0 2 2 2 1 NACHT domain MutS_V PF00488.16 gi|119720698|ref|YP_921193.1| - 0.0034 16.8 0.0 0.0065 15.9 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_33 PF13671.1 gi|119720698|ref|YP_921193.1| - 0.0038 17.1 0.0 0.014 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|119720698|ref|YP_921193.1| - 0.0042 16.5 0.6 0.019 14.4 0.2 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|119720698|ref|YP_921193.1| - 0.0048 16.8 0.0 0.027 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|119720698|ref|YP_921193.1| - 0.0095 15.3 0.1 0.061 12.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|119720698|ref|YP_921193.1| - 0.012 15.3 0.3 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B WES_acyltransf PF03007.11 gi|119720698|ref|YP_921193.1| - 0.012 15.2 0.1 0.018 14.6 0.1 1.2 1 0 0 1 1 1 0 Wax ester synthase-like Acyl-CoA acyltransferase domain ABC_ATPase PF09818.4 gi|119720698|ref|YP_921193.1| - 0.016 13.8 0.9 0.32 9.5 0.1 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DUF3584 PF12128.3 gi|119720698|ref|YP_921193.1| - 0.022 12.1 0.1 0.03 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Mg_chelatase PF01078.16 gi|119720698|ref|YP_921193.1| - 0.022 13.9 0.0 0.089 11.9 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|119720698|ref|YP_921193.1| - 0.029 13.2 0.0 0.074 11.9 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|119720698|ref|YP_921193.1| - 0.034 14.3 0.0 0.72 10.0 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|119720698|ref|YP_921193.1| - 0.042 13.0 0.1 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|119720698|ref|YP_921193.1| - 0.045 13.1 0.1 0.089 12.2 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|119720698|ref|YP_921193.1| - 0.057 12.9 0.0 0.32 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|119720698|ref|YP_921193.1| - 0.081 13.2 0.0 0.36 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain Semialdhyde_dhC PF02774.13 gi|119720698|ref|YP_921193.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain IstB_IS21 PF01695.12 gi|119720698|ref|YP_921193.1| - 0.12 11.8 0.0 4.1 6.7 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein Pox_A32 PF04665.7 gi|119720698|ref|YP_921193.1| - 0.13 11.5 0.1 8.4 5.6 0.0 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein SRP54 PF00448.17 gi|119720698|ref|YP_921193.1| - 0.18 11.2 0.0 0.76 9.1 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.10 gi|119720698|ref|YP_921193.1| - 0.19 10.3 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein PBP_like PF12727.2 gi|119720699|ref|YP_921194.1| - 1.2e-50 171.1 0.0 1.7e-50 170.7 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|119720699|ref|YP_921194.1| - 2.7e-05 23.8 0.0 4.1e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|119720699|ref|YP_921194.1| - 0.0022 17.4 0.0 0.0029 17.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HTH_1 PF00126.22 gi|119720699|ref|YP_921194.1| - 0.0057 16.3 3.7 0.035 13.8 0.2 3.2 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family QueT PF06177.6 gi|119720700|ref|YP_921195.1| - 2.8e-31 108.5 12.9 3.1e-31 108.3 8.9 1.0 1 0 0 1 1 1 1 QueT transporter DUF4013 PF13197.1 gi|119720701|ref|YP_921196.1| - 4.2e-24 84.7 26.8 5.9e-24 84.2 18.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) COPI_assoc PF08507.5 gi|119720702|ref|YP_921197.1| - 0.091 12.4 0.8 0.13 11.9 0.1 1.5 2 0 0 2 2 2 0 COPI associated protein Lon_2 PF13337.1 gi|119720703|ref|YP_921198.1| - 5.2e-143 476.7 0.0 6e-143 476.4 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease RuvB_N PF05496.7 gi|119720703|ref|YP_921198.1| - 0.074 12.0 0.0 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF1641 PF07849.6 gi|119720704|ref|YP_921199.1| - 3.6e-18 64.8 0.5 8.8e-18 63.6 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.9 gi|119720705|ref|YP_921200.1| - 1.3e-13 51.3 0.0 1.9e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|119720705|ref|YP_921200.1| - 2.2e-05 24.7 0.4 0.042 14.2 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|119720705|ref|YP_921200.1| - 0.0013 18.5 0.2 0.12 12.1 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding DAO PF01266.19 gi|119720705|ref|YP_921200.1| - 0.0022 16.9 0.7 1.1 8.0 0.3 2.6 1 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|119720705|ref|YP_921200.1| - 0.0069 15.4 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|119720705|ref|YP_921200.1| - 0.0081 14.8 0.9 0.16 10.5 0.1 2.1 1 1 1 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|119720705|ref|YP_921200.1| - 0.025 13.4 0.1 1.2 8.0 0.0 2.1 1 1 1 2 2 2 0 Lycopene cyclase protein HI0933_like PF03486.9 gi|119720705|ref|YP_921200.1| - 0.053 11.9 0.0 11 4.3 0.0 2.7 3 0 0 3 3 3 0 HI0933-like protein TrkA_N PF02254.13 gi|119720705|ref|YP_921200.1| - 0.16 11.9 0.1 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain TusA PF01206.12 gi|119720706|ref|YP_921201.1| - 3.4e-17 61.8 0.0 3.8e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.1 gi|119720707|ref|YP_921202.1| - 9.9e-12 44.8 0.6 2.8e-10 40.1 0.4 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|119720707|ref|YP_921202.1| - 1.2e-05 25.3 0.0 6.4e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.5 gi|119720707|ref|YP_921202.1| - 0.068 12.6 0.1 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 Anti-repressor SinI DUF2482 PF10655.4 gi|119720707|ref|YP_921202.1| - 0.07 13.1 0.0 0.097 12.7 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) Creatininase PF02633.9 gi|119720708|ref|YP_921203.1| - 4.2e-59 199.4 0.0 4.8e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.22 gi|119720709|ref|YP_921204.1| - 1.9e-36 125.3 0.0 7.1e-36 123.5 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|119720709|ref|YP_921204.1| - 6.2e-10 39.5 0.0 6.1e-06 26.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|119720709|ref|YP_921204.1| - 5.3e-09 35.9 0.3 3.1e-08 33.4 0.0 2.5 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.12 gi|119720709|ref|YP_921204.1| - 0.00028 20.9 0.1 0.0026 17.8 0.0 2.5 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|119720709|ref|YP_921204.1| - 0.00048 19.2 0.0 0.023 13.7 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|119720709|ref|YP_921204.1| - 0.0005 20.4 0.7 0.0023 18.3 0.5 1.9 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|119720709|ref|YP_921204.1| - 0.0016 18.5 0.0 0.0031 17.6 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Rad17 PF03215.10 gi|119720709|ref|YP_921204.1| - 0.0017 17.1 0.0 0.0025 16.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|119720709|ref|YP_921204.1| - 0.0046 17.1 2.1 0.093 12.8 1.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119720709|ref|YP_921204.1| - 0.0082 16.1 0.2 0.017 15.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|119720709|ref|YP_921204.1| - 0.017 14.3 0.3 0.37 9.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|119720709|ref|YP_921204.1| - 0.019 15.1 0.0 0.17 12.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|119720709|ref|YP_921204.1| - 0.019 14.8 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|119720709|ref|YP_921204.1| - 0.022 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|119720709|ref|YP_921204.1| - 0.041 14.7 0.2 0.11 13.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|119720709|ref|YP_921204.1| - 0.054 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|119720709|ref|YP_921204.1| - 0.076 12.2 0.0 0.34 10.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|119720709|ref|YP_921204.1| - 0.11 12.5 0.4 0.27 11.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|119720709|ref|YP_921204.1| - 0.12 12.8 0.0 2.9 8.3 0.0 2.5 3 0 0 3 3 2 0 Miro-like protein AAA_29 PF13555.1 gi|119720709|ref|YP_921204.1| - 0.14 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.17 gi|119720710|ref|YP_921205.1| - 1.5e-22 79.9 46.4 6.4e-17 61.6 12.9 5.1 2 1 3 5 5 5 2 Binding-protein-dependent transport system inner membrane component NDUF_B12 PF08122.7 gi|119720710|ref|YP_921205.1| - 7.9 6.3 6.8 3.2 7.5 0.1 4.1 4 1 0 4 4 4 0 NADH-ubiquinone oxidoreductase B12 subunit family SBP_bac_8 PF13416.1 gi|119720711|ref|YP_921206.1| - 5.7e-21 75.4 0.0 1.1e-20 74.5 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|119720711|ref|YP_921206.1| - 2e-20 73.1 0.0 3.3e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|119720711|ref|YP_921206.1| - 6e-15 55.7 1.0 6e-15 55.7 0.7 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|119720711|ref|YP_921206.1| - 1.1e-10 41.5 0.1 4e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF1180 PF06679.7 gi|119720711|ref|YP_921206.1| - 0.3 10.9 2.0 0.48 10.2 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Totivirus_coat PF05518.6 gi|119720711|ref|YP_921206.1| - 0.63 7.8 3.5 0.94 7.2 2.5 1.1 1 0 0 1 1 1 0 Totivirus coat protein Reo_sigmaC PF04582.7 gi|119720712|ref|YP_921207.1| - 0.00058 19.1 3.9 0.00085 18.6 2.7 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein ABC_transp_aux PF09822.4 gi|119720712|ref|YP_921207.1| - 0.00068 19.1 0.1 0.0017 17.8 0.0 1.6 2 0 0 2 2 2 1 ABC-type uncharacterized transport system Baculo_PEP_C PF04513.7 gi|119720712|ref|YP_921207.1| - 0.0061 16.3 3.0 0.012 15.4 2.0 1.4 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|119720712|ref|YP_921207.1| - 0.026 14.3 0.7 0.047 13.4 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) LPP PF04728.8 gi|119720712|ref|YP_921207.1| - 0.031 14.0 8.9 0.26 11.1 0.5 2.4 1 1 1 2 2 2 0 Lipoprotein leucine-zipper DUF4350 PF14258.1 gi|119720712|ref|YP_921207.1| - 0.048 13.8 0.1 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) HsbA PF12296.3 gi|119720712|ref|YP_921207.1| - 0.054 13.3 4.5 0.8 9.5 0.4 2.3 1 1 1 2 2 2 0 Hydrophobic surface binding protein A FlaC_arch PF05377.6 gi|119720712|ref|YP_921207.1| - 0.076 12.9 2.6 2.2 8.2 0.1 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF3149 PF11346.3 gi|119720712|ref|YP_921207.1| - 0.16 11.5 0.2 0.16 11.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) DUF869 PF05911.6 gi|119720712|ref|YP_921207.1| - 0.21 9.7 0.0 0.29 9.3 0.0 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Metallophos PF00149.23 gi|119720713|ref|YP_921208.1| - 4.2e-19 68.7 1.1 9e-19 67.6 0.7 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|119720713|ref|YP_921208.1| - 4e-08 33.2 0.0 6.3e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Herpes_gE PF02480.11 gi|119720713|ref|YP_921208.1| - 0.064 11.5 0.5 0.13 10.5 0.3 1.5 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E DUF1799 PF08809.6 gi|119720713|ref|YP_921208.1| - 0.1 12.4 0.3 0.69 9.7 0.1 2.3 2 1 0 2 2 2 0 Phage related hypothetical protein (DUF1799) MSA-2c PF12238.3 gi|119720713|ref|YP_921208.1| - 0.39 10.3 3.2 0.64 9.6 2.2 1.2 1 0 0 1 1 1 0 Merozoite surface antigen 2c PAT1 PF09770.4 gi|119720713|ref|YP_921208.1| - 6.4 4.8 10.3 8.9 4.4 7.1 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 gpW PF02831.10 gi|119720714|ref|YP_921209.1| - 0.054 13.0 0.1 0.3 10.6 0.0 2.0 2 0 0 2 2 2 0 gpW Helicase_C_2 PF13307.1 gi|119720715|ref|YP_921210.1| - 2e-29 102.6 0.0 3.5e-29 101.9 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|119720715|ref|YP_921210.1| - 5.5e-25 87.7 0.0 8.4e-25 87.1 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|119720715|ref|YP_921210.1| - 8.2e-06 25.7 0.0 0.002 17.9 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|119720715|ref|YP_921210.1| - 5.3e-05 22.7 0.0 0.0097 15.4 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF4156 PF13698.1 gi|119720715|ref|YP_921210.1| - 0.1 12.5 0.1 6 6.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4156) DUF1851 PF08906.6 gi|119720715|ref|YP_921210.1| - 0.14 12.1 0.4 6.7 6.7 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1851) Sua5_yciO_yrdC PF01300.13 gi|119720716|ref|YP_921211.1| - 9.8e-60 200.8 0.0 1.4e-59 200.3 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|119720716|ref|YP_921211.1| - 6.2e-29 100.6 0.0 9.3e-29 100.0 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Glyco_trans_4_4 PF13579.1 gi|119720716|ref|YP_921211.1| - 0.0013 18.8 2.7 0.024 14.8 0.1 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Pribosyltran PF00156.22 gi|119720717|ref|YP_921212.1| - 2.3e-23 82.2 2.0 4.5e-23 81.3 1.4 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|119720717|ref|YP_921212.1| - 0.028 13.7 0.1 0.084 12.1 0.1 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase UPRTase PF14681.1 gi|119720717|ref|YP_921212.1| - 0.03 13.5 0.2 0.044 12.9 0.2 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase CBS PF00571.23 gi|119720718|ref|YP_921213.1| - 6.8e-27 92.9 4.7 1.5e-08 34.2 0.1 4.5 4 0 0 4 4 4 4 CBS domain Fer4 PF00037.22 gi|119720719|ref|YP_921214.1| - 2.2e-18 65.0 43.8 9.6e-09 34.4 2.8 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|119720719|ref|YP_921214.1| - 2.9e-17 61.7 34.8 1.1e-06 28.1 1.3 4.7 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|119720719|ref|YP_921214.1| - 3.1e-17 62.6 69.8 1.9e-08 34.5 9.5 3.6 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|119720719|ref|YP_921214.1| - 3.1e-12 45.6 39.0 1.6e-05 24.4 2.3 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|119720719|ref|YP_921214.1| - 4.7e-12 45.5 30.0 7.8e-06 25.5 9.4 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|119720719|ref|YP_921214.1| - 6.6e-12 45.1 18.6 9.1e-11 41.5 9.0 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|119720719|ref|YP_921214.1| - 1.9e-11 43.3 35.3 0.00017 21.6 2.2 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|119720719|ref|YP_921214.1| - 1.9e-11 44.0 31.2 4.3e-05 23.6 9.3 3.1 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|119720719|ref|YP_921214.1| - 4e-08 33.8 24.9 0.012 16.2 1.1 4.1 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|119720719|ref|YP_921214.1| - 7.2e-08 32.3 31.2 0.0013 18.7 10.2 3.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|119720719|ref|YP_921214.1| - 1.3e-07 31.3 29.5 0.00034 20.3 8.2 3.2 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|119720719|ref|YP_921214.1| - 1.3e-05 25.3 47.5 0.044 14.3 4.2 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|119720719|ref|YP_921214.1| - 2.4e-05 24.6 32.4 0.054 13.8 1.9 4.0 1 1 4 5 5 5 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|119720719|ref|YP_921214.1| - 8.6e-05 23.0 26.4 0.016 15.7 0.7 4.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|119720719|ref|YP_921214.1| - 0.00011 22.5 35.6 0.035 14.5 4.2 4.2 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|119720719|ref|YP_921214.1| - 0.11 12.9 0.2 0.11 12.9 0.2 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain AFOR_C PF01314.13 gi|119720720|ref|YP_921215.1| - 5.7e-70 235.9 0.0 7.8e-70 235.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|119720720|ref|YP_921215.1| - 1.4e-60 204.1 0.1 2.2e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SfsA PF03749.8 gi|119720721|ref|YP_921216.1| - 5.2e-48 163.3 0.0 6.1e-48 163.1 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein DUF1626 PF07788.6 gi|119720721|ref|YP_921216.1| - 0.07 12.9 0.0 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1626) Meth_synt_2 PF01717.13 gi|119720722|ref|YP_921217.1| - 1.5e-11 43.8 0.0 1.3e-10 40.7 0.0 2.0 1 1 1 2 2 2 1 Cobalamin-independent synthase, Catalytic domain URO-D PF01208.12 gi|119720722|ref|YP_921217.1| - 0.01 14.7 0.0 0.029 13.3 0.0 1.8 2 0 0 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.7 gi|119720722|ref|YP_921217.1| - 0.055 12.7 0.0 0.51 9.5 0.0 2.0 2 0 0 2 2 2 0 Cobalamin-independent synthase, N-terminal domain RdRP_3 PF00998.18 gi|119720722|ref|YP_921217.1| - 0.071 11.5 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 Viral RNA dependent RNA polymerase MobB PF03205.9 gi|119720723|ref|YP_921218.1| - 2.2e-23 82.5 0.0 3.1e-23 82.0 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.8 gi|119720723|ref|YP_921218.1| - 3e-07 29.8 0.8 4.5e-07 29.3 0.5 1.3 1 0 0 1 1 1 1 Putative Fe-S cluster CbiA PF01656.18 gi|119720723|ref|YP_921218.1| - 0.0014 18.1 0.1 0.0019 17.6 0.1 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|119720723|ref|YP_921218.1| - 0.0022 18.8 0.0 0.0031 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|119720723|ref|YP_921218.1| - 0.0023 17.9 0.0 0.0035 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain LpxK PF02606.9 gi|119720723|ref|YP_921218.1| - 0.007 15.3 0.2 0.011 14.7 0.1 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_33 PF13671.1 gi|119720723|ref|YP_921218.1| - 0.01 15.7 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|119720723|ref|YP_921218.1| - 0.02 13.6 0.5 0.032 13.0 0.4 1.3 1 0 0 1 1 1 0 ArgK protein cobW PF02492.14 gi|119720723|ref|YP_921218.1| - 0.022 14.1 0.1 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|119720723|ref|YP_921218.1| - 0.028 14.5 0.0 0.047 13.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|119720723|ref|YP_921218.1| - 0.03 13.9 0.0 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain KTI12 PF08433.5 gi|119720723|ref|YP_921218.1| - 0.033 13.3 0.0 0.046 12.9 0.0 1.1 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|119720723|ref|YP_921218.1| - 0.056 12.8 0.0 0.13 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|119720723|ref|YP_921218.1| - 0.057 13.7 0.0 0.086 13.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.1 gi|119720723|ref|YP_921218.1| - 0.058 13.5 0.0 0.091 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|119720723|ref|YP_921218.1| - 0.073 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Torsin PF06309.6 gi|119720723|ref|YP_921218.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Torsin NTPase_1 PF03266.10 gi|119720723|ref|YP_921218.1| - 0.12 12.1 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 NTPase adh_short_C2 PF13561.1 gi|119720724|ref|YP_921219.1| - 3e-29 102.4 0.0 3.5e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|119720724|ref|YP_921219.1| - 1.7e-16 60.5 0.0 3e-16 59.8 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|119720724|ref|YP_921219.1| - 5.1e-05 23.0 0.0 8.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 KR domain PSK_trans_fac PF07704.6 gi|119720724|ref|YP_921219.1| - 0.0055 17.3 0.4 0.018 15.7 0.0 2.0 3 0 0 3 3 3 1 Rv0623-like transcription factor 3HCDH_N PF02737.13 gi|119720724|ref|YP_921219.1| - 0.029 14.0 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|119720724|ref|YP_921219.1| - 0.054 12.4 0.0 0.084 11.8 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase ThiF PF00899.16 gi|119720725|ref|YP_921220.1| - 1.3e-45 154.5 0.1 1.7e-45 154.1 0.1 1.1 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|119720725|ref|YP_921220.1| - 4.4e-23 80.6 0.0 8.9e-23 79.6 0.0 1.5 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|119720725|ref|YP_921220.1| - 1.2e-05 25.4 0.8 0.00022 21.3 0.6 2.1 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|119720725|ref|YP_921220.1| - 2.7e-05 23.3 0.1 4.4e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|119720725|ref|YP_921220.1| - 0.0018 17.7 0.1 0.0025 17.2 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|119720725|ref|YP_921220.1| - 0.002 17.0 2.2 0.25 10.2 1.3 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|119720725|ref|YP_921220.1| - 0.0032 17.1 0.1 0.0047 16.6 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|119720725|ref|YP_921220.1| - 0.0034 16.5 0.3 0.018 14.2 0.1 2.0 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.20 gi|119720725|ref|YP_921220.1| - 0.0054 16.6 0.1 0.0081 16.0 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_7 PF13241.1 gi|119720725|ref|YP_921220.1| - 0.022 15.0 0.1 0.037 14.2 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Ldh_1_N PF00056.18 gi|119720725|ref|YP_921220.1| - 0.024 14.4 1.0 0.064 13.0 0.7 1.7 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain KR PF08659.5 gi|119720725|ref|YP_921220.1| - 0.068 12.8 0.1 0.097 12.3 0.1 1.2 1 0 0 1 1 1 0 KR domain UDPG_MGDP_dh_N PF03721.9 gi|119720725|ref|YP_921220.1| - 0.081 12.2 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|119720725|ref|YP_921220.1| - 0.086 12.8 0.3 1.2 9.1 0.0 2.2 2 0 0 2 2 2 0 NADH(P)-binding DUF3090 PF11290.3 gi|119720725|ref|YP_921220.1| - 0.11 11.9 0.7 0.82 9.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) Pyr_redox_3 PF13738.1 gi|119720725|ref|YP_921220.1| - 0.14 12.2 0.9 0.2 11.6 0.6 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|119720725|ref|YP_921220.1| - 0.16 10.9 0.3 0.23 10.4 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain MFS_1 PF07690.11 gi|119720726|ref|YP_921221.1| - 2e-24 86.0 44.9 2.4e-19 69.2 15.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|119720726|ref|YP_921221.1| - 1.8e-05 23.3 5.8 1.8e-05 23.3 4.0 2.6 2 1 1 3 3 3 1 MFS/sugar transport protein DUF3092 PF11289.3 gi|119720726|ref|YP_921221.1| - 0.69 9.0 5.6 0.072 12.3 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3092) Pyr_redox_2 PF07992.9 gi|119720727|ref|YP_921222.1| - 5.6e-28 98.2 1.2 9.5e-27 94.1 0.8 3.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|119720727|ref|YP_921222.1| - 1.1e-24 86.5 0.2 2e-24 85.7 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|119720727|ref|YP_921222.1| - 2.6e-14 53.3 0.1 6.5e-14 52.0 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|119720727|ref|YP_921222.1| - 1.3e-06 28.6 0.0 3.8e-05 23.8 0.0 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|119720727|ref|YP_921222.1| - 0.00042 19.3 0.5 0.03 13.2 0.1 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|119720727|ref|YP_921222.1| - 0.00084 18.4 2.2 0.0076 15.3 0.2 2.1 1 1 1 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|119720727|ref|YP_921222.1| - 0.007 15.2 1.6 0.77 8.5 0.0 2.6 1 1 2 3 3 3 2 FAD binding domain K_oxygenase PF13434.1 gi|119720727|ref|YP_921222.1| - 0.0091 14.9 0.0 1.2 7.9 0.0 2.6 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|119720727|ref|YP_921222.1| - 0.014 14.2 0.2 2.4 6.9 0.1 2.6 1 1 2 3 3 3 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|119720727|ref|YP_921222.1| - 0.022 14.1 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|119720727|ref|YP_921222.1| - 0.027 14.4 0.1 0.084 12.9 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|119720727|ref|YP_921222.1| - 0.033 13.8 0.0 0.082 12.5 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|119720727|ref|YP_921222.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain Peptidase_S49 PF01343.13 gi|119720728|ref|YP_921223.1| - 9.5e-33 113.1 0.0 1.2e-32 112.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|119720728|ref|YP_921223.1| - 7.4e-06 25.7 0.0 0.0017 18.0 0.0 2.2 2 0 0 2 2 2 2 Clp protease ECH PF00378.15 gi|119720728|ref|YP_921223.1| - 0.0044 16.1 0.1 0.039 13.0 0.0 2.3 3 0 0 3 3 3 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|119720728|ref|YP_921223.1| - 0.012 14.4 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Succ_CoA_lig PF13607.1 gi|119720728|ref|YP_921223.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Glyco_tranf_2_3 PF13641.1 gi|119720729|ref|YP_921224.1| - 3e-34 118.7 0.0 4e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|119720729|ref|YP_921224.1| - 1.2e-25 90.3 0.2 1.2e-25 90.3 0.1 2.2 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|119720729|ref|YP_921224.1| - 0.00024 20.8 0.0 0.00038 20.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|119720729|ref|YP_921224.1| - 0.00082 18.6 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 TM_helix PF05552.7 gi|119720730|ref|YP_921225.1| - 0.033 13.8 1.7 0.033 13.8 1.1 2.1 2 1 1 3 3 3 0 Conserved TM helix DUF1049 PF06305.6 gi|119720730|ref|YP_921225.1| - 0.23 10.9 13.4 0.12 11.8 2.5 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF1049) Multi_Drug_Res PF00893.14 gi|119720730|ref|YP_921225.1| - 0.28 11.6 8.0 0.039 14.4 2.7 1.7 2 0 0 2 2 2 0 Small Multidrug Resistance protein DUF3796 PF12676.2 gi|119720730|ref|YP_921225.1| - 1.3 9.2 8.4 0.16 12.1 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3796) Cortexin PF11057.3 gi|119720730|ref|YP_921225.1| - 1.5 8.4 6.8 1.5 8.4 1.1 2.7 2 1 1 3 3 3 0 Cortexin of kidney 7TMR-DISM_7TM PF07695.6 gi|119720730|ref|YP_921225.1| - 2.3 7.8 12.1 0.18 11.4 4.5 1.8 2 0 0 2 2 2 0 7TM diverse intracellular signalling MFS_1 PF07690.11 gi|119720731|ref|YP_921226.1| - 0.84 8.2 53.8 0.049 12.3 11.8 3.1 1 1 2 3 3 3 0 Major Facilitator Superfamily NTP_transferase PF00483.18 gi|119720732|ref|YP_921227.1| - 3.9e-32 111.5 0.0 8.3e-32 110.4 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|119720732|ref|YP_921227.1| - 2.1e-08 34.3 0.0 3e-08 33.9 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Desulfoferrodox PF01880.13 gi|119720733|ref|YP_921228.1| - 1e-26 93.0 0.0 1.2e-26 92.7 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.1 gi|119720733|ref|YP_921228.1| - 0.1 12.6 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY MFS_2 PF13347.1 gi|119720734|ref|YP_921229.1| - 9.3e-31 106.6 25.7 1.1e-30 106.3 17.8 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.11 gi|119720734|ref|YP_921229.1| - 2.5e-15 56.0 35.5 2.5e-15 56.0 24.6 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily EamA PF00892.15 gi|119720735|ref|YP_921230.1| - 1.2e-29 102.9 29.6 1.2e-15 57.6 8.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|119720735|ref|YP_921230.1| - 1e-12 48.2 14.8 1.2e-07 31.8 1.7 3.5 3 1 1 4 4 4 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|119720735|ref|YP_921230.1| - 0.0014 18.3 4.2 0.0067 16.2 0.5 2.7 2 0 0 2 2 2 1 Uncharacterised protein family UPF0546 Nuc_sug_transp PF04142.10 gi|119720735|ref|YP_921230.1| - 0.0033 16.5 0.9 0.0047 16.0 0.1 1.7 2 0 0 2 2 2 1 Nucleotide-sugar transporter TPT PF03151.11 gi|119720735|ref|YP_921230.1| - 0.13 11.8 13.8 3.2 7.3 0.4 3.1 2 2 0 2 2 2 0 Triose-phosphate Transporter family tRNA-synt_2 PF00152.15 gi|119720736|ref|YP_921231.1| - 2.1e-33 115.5 0.1 3.9e-31 108.0 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) ETF PF01012.16 gi|119720737|ref|YP_921232.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Cyclophil_like PF04126.8 gi|119720738|ref|YP_921233.1| - 2.1e-30 104.7 0.0 3.5e-30 104.0 0.0 1.4 1 0 0 1 1 1 1 Cyclophilin-like G2F PF07474.7 gi|119720738|ref|YP_921233.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 G2F domain MR_MLE PF01188.16 gi|119720740|ref|YP_921235.1| - 1.8e-21 76.4 2.8 2.1e-21 76.1 0.8 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|119720740|ref|YP_921235.1| - 2.6e-17 62.7 0.0 2.2e-16 59.8 0.0 2.1 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|119720740|ref|YP_921235.1| - 6.7e-12 45.4 0.0 2.6e-11 43.5 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|119720740|ref|YP_921235.1| - 0.0049 15.8 0.1 0.0074 15.2 0.0 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Enolase_C PF00113.17 gi|119720740|ref|YP_921235.1| - 0.0072 15.3 0.0 0.067 12.1 0.0 2.0 2 0 0 2 2 2 1 Enolase, C-terminal TIM barrel domain Radical_SAM PF04055.16 gi|119720740|ref|YP_921235.1| - 0.047 13.8 2.0 0.24 11.5 0.8 2.2 2 1 0 2 2 2 0 Radical SAM superfamily P5CR_dimer PF14748.1 gi|119720742|ref|YP_921237.1| - 6.7e-32 109.6 0.1 1.3e-31 108.7 0.1 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|119720742|ref|YP_921237.1| - 1.5e-18 67.0 0.3 3.6e-18 65.7 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|119720742|ref|YP_921237.1| - 3.4e-07 30.1 2.9 5.4e-06 26.2 0.7 2.5 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|119720742|ref|YP_921237.1| - 1.7e-05 24.2 0.9 6.5e-05 22.4 0.5 2.0 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|119720742|ref|YP_921237.1| - 0.0002 20.5 0.2 0.00049 19.3 0.1 1.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|119720742|ref|YP_921237.1| - 0.00035 20.3 0.4 0.00071 19.2 0.3 1.4 1 0 0 1 1 1 1 Rossmann-like domain NAD_binding_10 PF13460.1 gi|119720742|ref|YP_921237.1| - 0.00045 20.2 0.4 0.00072 19.6 0.3 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|119720742|ref|YP_921237.1| - 0.00066 19.5 0.1 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding_2 PF13380.1 gi|119720742|ref|YP_921237.1| - 0.0008 19.5 0.1 0.0014 18.7 0.1 1.4 1 0 0 1 1 1 1 CoA binding domain PDH PF02153.12 gi|119720742|ref|YP_921237.1| - 0.0018 17.2 0.1 0.0054 15.6 0.0 1.7 2 0 0 2 2 2 1 Prephenate dehydrogenase Saccharop_dh PF03435.13 gi|119720742|ref|YP_921237.1| - 0.0064 15.5 0.2 0.009 15.0 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase