# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF3391 PF11871.8 gi|119709758|ref|YP_919098.1| - 4.4 7.8 7.0 17 5.9 2.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) CPBP PF02517.16 gi|119709760|ref|YP_919100.1| - 1.8e-05 25.0 9.6 1.8e-05 25.0 9.6 3.6 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF1421 PF07223.11 gi|119709765|ref|YP_919105.1| - 0.051 13.4 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 UBA-like domain (DUF1421) zf-RRN7 PF11781.8 gi|119709767|ref|YP_919107.1| - 0.0067 16.1 6.6 0.009 15.7 6.6 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|119709767|ref|YP_919107.1| - 0.13 12.3 7.3 0.19 11.7 7.3 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DotD PF16816.5 gi|119709768|ref|YP_919108.1| - 0.15 12.0 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 DotD protein RHH_1 PF01402.21 gi|119709770|ref|YP_919110.1| - 0.003 17.4 0.1 0.017 15.0 0.1 2.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|119709770|ref|YP_919110.1| - 0.0032 17.4 0.6 0.019 14.9 0.2 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix domain GAS PF13851.6 gi|119709770|ref|YP_919110.1| - 0.01 15.2 2.8 0.011 15.1 0.6 2.0 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding RmuC PF02646.16 gi|119709770|ref|YP_919110.1| - 0.025 13.7 0.5 0.21 10.7 0.4 2.3 2 1 0 2 2 2 0 RmuC family Phage_terminase PF10668.9 gi|119709770|ref|YP_919110.1| - 0.034 14.1 0.7 11 6.1 0.2 2.6 2 0 0 2 2 2 0 Phage terminase small subunit CopG_antitoxin PF12441.8 gi|119709770|ref|YP_919110.1| - 0.05 14.1 0.1 0.13 12.8 0.1 1.7 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system LTXXQ PF07813.12 gi|119709770|ref|YP_919110.1| - 0.053 14.3 3.6 0.19 12.4 3.6 2.0 1 1 0 1 1 1 0 LTXXQ motif family protein SKA2 PF16740.5 gi|119709770|ref|YP_919110.1| - 0.059 13.2 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 YAcAr PF10686.9 gi|119709770|ref|YP_919110.1| - 0.062 13.3 0.1 0.22 11.5 0.0 2.0 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family Surfac_D-trimer PF09006.11 gi|119709770|ref|YP_919110.1| - 0.074 13.0 0.0 0.26 11.2 0.0 2.0 1 1 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation PSK_trans_fac PF07704.11 gi|119709770|ref|YP_919110.1| - 0.075 13.8 0.7 0.075 13.8 0.7 3.1 2 2 1 3 3 3 0 Rv0623-like transcription factor APG6_N PF17675.1 gi|119709770|ref|YP_919110.1| - 0.11 13.0 5.0 0.082 13.4 1.4 2.2 2 1 0 2 2 2 0 Apg6 coiled-coil region YabA PF06156.13 gi|119709770|ref|YP_919110.1| - 0.17 12.5 1.4 2.5 8.8 0.5 2.7 3 1 0 3 3 3 0 Initiation control protein YabA Sigma70_r3 PF04539.16 gi|119709773|ref|YP_919113.1| - 0.0011 19.0 0.0 0.1 12.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70 region 3 HTH_24 PF13412.6 gi|119709773|ref|YP_919113.1| - 0.0016 18.0 0.0 0.0045 16.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|119709773|ref|YP_919113.1| - 0.0034 17.1 0.0 0.0089 15.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|119709773|ref|YP_919113.1| - 0.019 15.3 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein TrmB PF01978.19 gi|119709773|ref|YP_919113.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MerR PF00376.23 gi|119709773|ref|YP_919113.1| - 0.13 12.0 0.2 0.81 9.5 0.2 2.1 1 1 0 1 1 1 0 MerR family regulatory protein YgbB PF02542.16 gi|119709773|ref|YP_919113.1| - 0.21 11.9 0.0 0.3 11.3 0.0 1.2 1 0 0 1 1 1 0 YgbB family DUF1771 PF08590.10 gi|119709774|ref|YP_919114.1| - 0.0016 18.8 0.1 0.0024 18.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) DOPA_dioxygen PF08883.11 gi|119709774|ref|YP_919114.1| - 0.056 13.6 0.0 0.098 12.8 0.0 1.3 1 0 0 1 1 1 0 Dopa 4,5-dioxygenase family BatA PF07584.11 gi|119709776|ref|YP_919116.1| - 0.045 14.1 0.3 0.045 14.1 0.3 2.3 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal Totivirus_coat PF05518.11 gi|119709776|ref|YP_919116.1| - 0.063 11.3 0.6 0.086 10.9 0.6 1.1 1 0 0 1 1 1 0 Totivirus coat protein DUF4175 PF13779.6 gi|119709776|ref|YP_919116.1| - 0.17 9.7 0.2 0.25 9.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) TGBp3 PF02495.17 gi|119709776|ref|YP_919116.1| - 0.56 9.9 3.2 1.2 8.8 0.1 2.4 2 0 0 2 2 2 0 Triple gene block 3 DUF641 PF04859.12 gi|119709780|ref|YP_919120.1| - 0.035 14.5 0.2 0.041 14.2 0.2 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) HEPN-like_int PF18867.1 gi|119709780|ref|YP_919120.1| - 0.04 13.8 0.0 0.051 13.4 0.0 1.1 1 0 0 1 1 1 0 HEPN-like integron domain APG6_N PF17675.1 gi|119709780|ref|YP_919120.1| - 0.058 13.9 3.7 0.076 13.5 3.7 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region zf-ISL3 PF14690.6 gi|119709780|ref|YP_919120.1| - 0.067 13.9 0.2 0.12 13.0 0.2 1.4 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PDEase_I_N PF08499.12 gi|119709782|ref|YP_919122.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal FUSC_2 PF13515.6 gi|119709783|ref|YP_919123.1| - 0.048 13.8 7.1 0.077 13.1 7.1 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein-like zf-C5HC2 PF02928.16 gi|119709785|ref|YP_919125.1| - 0.07 13.5 0.5 0.14 12.6 0.1 1.7 2 0 0 2 2 2 0 C5HC2 zinc finger DUF1450 PF07293.11 gi|119709785|ref|YP_919125.1| - 0.1 12.4 0.7 0.34 10.7 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1450) FUN14 PF04930.15 gi|119709786|ref|YP_919126.1| - 6e-06 26.6 2.6 7.5e-06 26.3 2.6 1.1 1 0 0 1 1 1 1 FUN14 family SPC12 PF06645.13 gi|119709786|ref|YP_919126.1| - 0.44 10.7 5.0 6.2 7.0 2.8 2.2 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF3437 PF11919.8 gi|119709788|ref|YP_919128.1| - 0.18 11.7 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) DUF3563 PF12086.8 gi|119709789|ref|YP_919129.1| - 0.081 12.7 0.6 4.8 7.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3563) Ku_C PF03730.14 gi|119709789|ref|YP_919129.1| - 0.14 12.9 0.1 0.2 12.4 0.1 1.2 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm PSK_trans_fac PF07704.11 gi|119709791|ref|YP_919131.1| - 0.00047 20.9 2.3 0.00068 20.3 2.3 1.3 1 1 0 1 1 1 1 Rv0623-like transcription factor RHH_1 PF01402.21 gi|119709791|ref|YP_919131.1| - 0.0014 18.5 5.2 0.0015 18.4 3.9 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family ParE_toxin PF05016.15 gi|119709791|ref|YP_919131.1| - 0.0015 19.1 0.9 0.0017 18.9 0.9 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RAC_head PF16717.5 gi|119709791|ref|YP_919131.1| - 0.0047 17.9 0.9 0.005 17.8 0.9 1.1 1 0 0 1 1 1 1 Ribosome-associated complex head domain ADSL_C PF10397.9 gi|119709791|ref|YP_919131.1| - 0.0075 16.8 1.2 0.0075 16.8 1.2 1.1 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus TetR_C_11 PF16859.5 gi|119709791|ref|YP_919131.1| - 0.009 16.3 0.1 0.0095 16.2 0.1 1.1 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain CPL PF08144.11 gi|119709791|ref|YP_919131.1| - 0.013 15.8 0.3 0.014 15.7 0.3 1.1 1 0 0 1 1 1 0 CPL (NUC119) domain DnaI_N PF07319.11 gi|119709791|ref|YP_919131.1| - 0.013 16.1 0.2 0.016 15.9 0.2 1.1 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus DUF3818 PF12825.7 gi|119709791|ref|YP_919131.1| - 0.017 14.2 0.5 0.018 14.1 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) Lipoprotein_16 PF03923.13 gi|119709791|ref|YP_919131.1| - 0.023 14.4 0.2 0.026 14.2 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized lipoprotein GerD PF17898.1 gi|119709791|ref|YP_919131.1| - 0.024 14.6 0.3 0.038 13.9 0.3 1.4 1 1 0 1 1 1 0 Spore germination GerD central core domain PEP-utilisers_N PF05524.13 gi|119709791|ref|YP_919131.1| - 0.025 14.7 1.0 0.03 14.5 1.0 1.0 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal NEMO PF11577.8 gi|119709791|ref|YP_919131.1| - 0.026 14.5 1.9 0.032 14.3 1.9 1.2 1 0 0 1 1 1 0 NF-kappa-B essential modulator NEMO RPN7 PF10602.9 gi|119709791|ref|YP_919131.1| - 0.033 13.9 1.9 0.041 13.6 1.9 1.1 1 0 0 1 1 1 0 26S proteasome subunit RPN7 AAA_32 PF13654.6 gi|119709791|ref|YP_919131.1| - 0.039 12.8 1.0 0.04 12.7 1.0 1.0 1 0 0 1 1 1 0 AAA domain XH PF03469.14 gi|119709791|ref|YP_919131.1| - 0.042 13.8 0.8 0.056 13.4 0.7 1.4 1 1 1 2 2 2 0 XH domain T6SS_VipA PF05591.12 gi|119709791|ref|YP_919131.1| - 0.044 13.6 2.0 0.049 13.4 2.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 DUF445 PF04286.12 gi|119709791|ref|YP_919131.1| - 0.046 13.5 1.1 0.047 13.5 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Sec3_C_2 PF15278.6 gi|119709791|ref|YP_919131.1| - 0.049 14.0 0.5 0.062 13.7 0.5 1.2 1 0 0 1 1 1 0 Sec3 exocyst complex subunit MethyTransf_Reg PF10119.9 gi|119709791|ref|YP_919131.1| - 0.065 13.9 0.2 0.073 13.8 0.2 1.2 1 0 0 1 1 1 0 Predicted methyltransferase regulatory domain Taeniidae_ag PF05596.11 gi|119709791|ref|YP_919131.1| - 0.075 13.0 2.0 0.18 11.8 1.5 1.7 2 0 0 2 2 2 0 Taeniidae antigen RNase_J_C PF17770.1 gi|119709791|ref|YP_919131.1| - 0.078 14.0 0.3 0.093 13.8 0.3 1.2 1 0 0 1 1 1 0 Ribonuclease J C-terminal domain COMP PF11598.8 gi|119709791|ref|YP_919131.1| - 0.089 13.3 4.2 0.11 13.0 2.2 2.1 2 1 0 2 2 2 0 Cartilage oligomeric matrix protein Se-cys_synth_N PF12390.8 gi|119709791|ref|YP_919131.1| - 0.18 12.0 2.1 7.5 6.9 2.1 2.7 1 1 0 1 1 1 0 Selenocysteine synthase N terminal Regulator_TrmB PF11495.8 gi|119709792|ref|YP_919132.1| - 0.045 12.9 0.3 0.05 12.8 0.3 1.0 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB ERCC3_RAD25_C PF16203.5 gi|119709793|ref|YP_919133.1| - 2e-14 53.4 0.0 3.5e-12 46.1 0.0 2.3 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|119709793|ref|YP_919133.1| - 6.2e-10 39.4 0.0 1.4e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119709793|ref|YP_919133.1| - 8.5e-10 38.9 0.0 7.2e-09 35.9 0.0 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|119709793|ref|YP_919133.1| - 1.3e-08 34.8 0.0 4.6e-08 33.0 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase TelA PF05816.11 gi|119709793|ref|YP_919133.1| - 0.00051 19.2 0.3 0.00088 18.4 0.3 1.3 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) SecA_DEAD PF07517.14 gi|119709793|ref|YP_919133.1| - 0.005 16.2 0.9 0.016 14.5 0.0 1.9 2 0 0 2 2 2 1 SecA DEAD-like domain AAA_30 PF13604.6 gi|119709793|ref|YP_919133.1| - 0.033 13.9 0.1 0.48 10.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain Not3 PF04065.15 gi|119709793|ref|YP_919133.1| - 0.14 11.5 3.7 0.56 9.6 0.7 2.2 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF3909 PF13077.6 gi|119709795|ref|YP_919135.1| - 0.042 14.0 0.8 0.077 13.2 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3909) P22_Tail-4 PF11650.8 gi|119709795|ref|YP_919135.1| - 0.14 12.1 0.6 0.2 11.6 0.6 1.2 1 0 0 1 1 1 0 P22 tail accessory factor S-layer PF07752.11 gi|119709798|ref|YP_919138.1| - 0.058 12.5 0.2 0.066 12.3 0.2 1.0 1 0 0 1 1 1 0 S-layer protein Ecotin PF03974.13 gi|119709799|ref|YP_919139.1| - 0.016 15.2 0.0 0.028 14.4 0.0 1.5 1 1 0 1 1 1 0 Ecotin DUF4979 PF16351.5 gi|119709799|ref|YP_919139.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4979) UL41A PF17591.2 gi|119709805|ref|YP_919145.1| - 0.04 14.0 0.6 0.089 12.9 0.1 1.9 1 1 0 1 1 1 0 Herpesvirus UL41A Imm70 PF15601.6 gi|119709805|ref|YP_919145.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 70 zf_C2H2_10 PF18414.1 gi|119709807|ref|YP_919147.1| - 0.93 9.1 3.7 8.1 6.1 0.1 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger Vitellogenin_N PF01347.22 gi|119709808|ref|YP_919148.1| - 0.03 12.7 0.0 0.47 8.8 0.0 1.9 1 1 1 2 2 2 0 Lipoprotein amino terminal region Phage_integrase PF00589.22 gi|119709809|ref|YP_919149.1| - 3.4e-34 118.1 0.0 5.7e-34 117.4 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|119709809|ref|YP_919149.1| - 2.9e-05 24.3 0.5 0.0016 18.7 0.0 3.1 2 2 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain DUF4224 PF13986.6 gi|119709809|ref|YP_919149.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) PAP2 PF01569.21 gi|119718919|ref|YP_919414.1| - 4.9e-16 58.7 6.3 4.9e-16 58.7 6.3 3.1 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|119718919|ref|YP_919414.1| - 1.2e-05 25.1 4.9 1.2e-05 25.1 4.9 2.6 2 1 0 2 2 2 1 PAP2 superfamily Peptidase_M42 PF05343.14 gi|119718920|ref|YP_919415.1| - 2.4e-98 328.7 0.0 2.8e-98 328.5 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|119718920|ref|YP_919415.1| - 3.2e-10 40.1 0.1 8.6e-10 38.7 0.1 1.7 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|119718920|ref|YP_919415.1| - 3.2e-05 22.9 0.0 0.04 12.7 0.0 2.3 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|119718920|ref|YP_919415.1| - 0.047 13.4 0.0 0.8 9.4 0.0 2.3 2 0 0 2 2 2 0 Peptidase family M28 Hydrolase_4 PF12146.8 gi|119718921|ref|YP_919416.1| - 1.2e-18 67.3 0.0 6e-16 58.4 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|119718921|ref|YP_919416.1| - 3e-16 59.8 0.0 5.3e-15 55.8 0.0 2.0 2 0 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|119718921|ref|YP_919416.1| - 4.8e-14 52.3 0.0 2.3e-13 50.1 0.0 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|119718921|ref|YP_919416.1| - 2.5e-12 47.9 0.0 3.6e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|119718921|ref|YP_919416.1| - 4.6e-12 46.1 0.0 7.3e-09 35.6 0.0 2.1 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|119718921|ref|YP_919416.1| - 4.2e-08 33.0 0.0 6.6e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family AXE1 PF05448.12 gi|119718921|ref|YP_919416.1| - 1.2e-05 24.1 0.1 3.6e-05 22.6 0.1 1.9 1 1 1 2 2 2 1 Acetyl xylan esterase (AXE1) DUF676 PF05057.14 gi|119718921|ref|YP_919416.1| - 0.00022 20.8 0.0 0.00035 20.2 0.0 1.3 1 0 0 1 1 1 1 Putative serine esterase (DUF676) DUF829 PF05705.14 gi|119718921|ref|YP_919416.1| - 0.00024 21.1 0.0 0.00032 20.7 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) DUF2048 PF09752.9 gi|119718921|ref|YP_919416.1| - 0.00058 19.1 0.1 0.11 11.5 0.0 2.1 2 0 0 2 2 2 2 Abhydrolase domain containing 18 FSH1 PF03959.13 gi|119718921|ref|YP_919416.1| - 0.00066 19.4 0.0 0.0028 17.3 0.0 1.9 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Prok-E2_E PF14462.6 gi|119718921|ref|YP_919416.1| - 0.0085 15.9 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic E2 family E Esterase PF00756.20 gi|119718921|ref|YP_919416.1| - 0.01 15.5 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase BAAT_C PF08840.11 gi|119718921|ref|YP_919416.1| - 0.014 15.3 0.0 0.028 14.3 0.0 1.7 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydro_lipase PF04083.16 gi|119718921|ref|YP_919416.1| - 0.022 14.3 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region DUF3328 PF11807.8 gi|119718921|ref|YP_919416.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3328) Abhydrolase_5 PF12695.7 gi|119718921|ref|YP_919416.1| - 0.13 12.0 0.0 3.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|119718921|ref|YP_919416.1| - 0.2 11.5 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 gi|119718921|ref|YP_919416.1| - 0.25 11.1 0.0 0.5 10.1 0.0 1.5 2 0 0 2 2 1 0 Phospholipase/Carboxylesterase MFS_1 PF07690.16 gi|119718922|ref|YP_919417.1| - 1.2e-39 136.3 37.5 1.2e-39 136.3 37.5 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|119718922|ref|YP_919417.1| - 2.2e-08 33.1 29.5 3.7e-05 22.5 18.8 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|119718922|ref|YP_919417.1| - 1e-07 31.2 23.3 0.00019 20.4 6.8 2.6 1 1 1 2 2 2 2 Sugar (and other) transporter TRI12 PF06609.13 gi|119718922|ref|YP_919417.1| - 5.5e-05 21.8 2.3 5.5e-05 21.8 2.3 1.5 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|119718922|ref|YP_919417.1| - 0.019 13.3 0.2 0.019 13.3 0.2 2.8 3 1 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family ABC_tran PF00005.27 gi|119718923|ref|YP_919418.1| - 1e-28 100.6 0.0 1.4e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119718923|ref|YP_919418.1| - 1.2e-08 35.2 0.8 7.2e-07 29.3 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|119718923|ref|YP_919418.1| - 0.00011 21.9 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119718923|ref|YP_919418.1| - 0.016 15.5 0.2 0.069 13.4 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|119718923|ref|YP_919418.1| - 0.019 15.4 0.2 0.034 14.5 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|119718923|ref|YP_919418.1| - 0.044 13.9 0.0 0.077 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|119718923|ref|YP_919418.1| - 0.053 13.2 0.2 0.23 11.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|119718923|ref|YP_919418.1| - 0.075 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|119718923|ref|YP_919418.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|119718923|ref|YP_919418.1| - 0.14 12.1 0.3 0.28 11.1 0.1 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|119718923|ref|YP_919418.1| - 0.18 11.5 0.0 0.41 10.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|119718923|ref|YP_919418.1| - 0.2 11.4 0.1 0.35 10.6 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.27 gi|119718924|ref|YP_919419.1| - 2.1e-26 93.0 0.0 3.1e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119718924|ref|YP_919419.1| - 1.1e-09 38.6 0.4 0.00013 21.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119718924|ref|YP_919419.1| - 1e-07 31.6 0.0 1.6e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|119718924|ref|YP_919419.1| - 1.5e-05 25.6 0.8 0.046 14.3 0.2 2.3 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|119718924|ref|YP_919419.1| - 0.00022 21.6 0.1 0.0033 17.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|119718924|ref|YP_919419.1| - 0.00031 20.7 0.0 0.00052 20.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|119718924|ref|YP_919419.1| - 0.00064 20.2 0.1 0.0011 19.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|119718924|ref|YP_919419.1| - 0.00085 19.1 0.0 0.0082 15.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119718924|ref|YP_919419.1| - 0.0014 19.1 0.0 0.0023 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|119718924|ref|YP_919419.1| - 0.002 17.6 0.1 0.0087 15.5 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|119718924|ref|YP_919419.1| - 0.0029 17.6 0.2 0.056 13.4 0.0 2.1 2 0 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 gi|119718924|ref|YP_919419.1| - 0.0061 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|119718924|ref|YP_919419.1| - 0.009 15.6 0.2 0.032 13.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|119718924|ref|YP_919419.1| - 0.013 15.8 0.1 0.045 14.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|119718924|ref|YP_919419.1| - 0.015 15.5 0.3 0.075 13.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|119718924|ref|YP_919419.1| - 0.016 15.0 0.0 0.044 13.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|119718924|ref|YP_919419.1| - 0.016 15.4 0.0 0.1 12.8 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.17 gi|119718924|ref|YP_919419.1| - 0.016 14.9 0.1 0.46 10.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein PduV-EutP PF10662.9 gi|119718924|ref|YP_919419.1| - 0.019 14.7 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.14 gi|119718924|ref|YP_919419.1| - 0.022 14.7 0.1 0.057 13.4 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|119718924|ref|YP_919419.1| - 0.024 14.5 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|119718924|ref|YP_919419.1| - 0.028 14.6 0.2 0.074 13.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.10 gi|119718924|ref|YP_919419.1| - 0.036 13.5 0.1 0.06 12.8 0.1 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_14 PF13173.6 gi|119718924|ref|YP_919419.1| - 0.067 13.2 0.1 0.39 10.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|119718924|ref|YP_919419.1| - 0.074 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119718924|ref|YP_919419.1| - 0.079 13.3 0.1 1 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|119718924|ref|YP_919419.1| - 0.14 12.0 0.1 3.4 7.6 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B TniB PF05621.11 gi|119718924|ref|YP_919419.1| - 0.17 11.3 0.0 13 5.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein ATPase PF06745.13 gi|119718924|ref|YP_919419.1| - 0.17 11.2 0.1 6.5 6.0 0.0 2.1 2 0 0 2 2 2 0 KaiC RNA_helicase PF00910.22 gi|119718924|ref|YP_919419.1| - 0.19 12.1 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|119718924|ref|YP_919419.1| - 0.22 10.7 0.3 0.35 10.0 0.3 1.6 1 1 0 1 1 1 0 NB-ARC domain Adeno_IVa2 PF02456.15 gi|119718924|ref|YP_919419.1| - 0.24 10.2 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein CbiQ PF02361.16 gi|119718925|ref|YP_919420.1| - 6e-17 62.0 10.4 8e-17 61.6 10.4 1.2 1 0 0 1 1 1 1 Cobalt transport protein QueT PF06177.11 gi|119718926|ref|YP_919421.1| - 1.7e-09 38.2 16.7 2.1e-09 37.9 16.7 1.1 1 0 0 1 1 1 1 QueT transporter Transglut_core PF01841.19 gi|119718927|ref|YP_919422.1| - 2.8e-23 82.5 0.2 6.7e-23 81.3 0.2 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.6 gi|119718927|ref|YP_919422.1| - 0.0053 16.7 0.1 0.016 15.1 0.1 1.8 1 0 0 1 1 1 1 Transglutaminase-like superfamily TPR_14 PF13428.6 gi|119718927|ref|YP_919422.1| - 0.73 10.8 4.2 1.5 9.8 0.2 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat ADK PF00406.22 gi|119718928|ref|YP_919423.1| - 6e-43 146.5 0.0 7e-43 146.3 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|119718928|ref|YP_919423.1| - 1.6e-18 67.5 0.0 2.4e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|119718928|ref|YP_919423.1| - 5.9e-14 51.8 5.4 9.5e-14 51.1 5.4 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.6 gi|119718928|ref|YP_919423.1| - 2.3e-05 24.8 1.7 0.01 16.3 0.1 2.4 1 1 1 2 2 2 2 Recombinase zinc beta ribbon domain AAA_18 PF13238.6 gi|119718928|ref|YP_919423.1| - 7.3e-05 23.3 0.0 0.00014 22.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|119718928|ref|YP_919423.1| - 0.00028 21.2 0.0 0.033 14.5 0.1 2.2 1 1 0 2 2 2 1 Hydin Adenylate kinase-like domain zf-ribbon_3 PF13248.6 gi|119718928|ref|YP_919423.1| - 0.0038 16.6 1.7 2 8.0 0.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|119718928|ref|YP_919423.1| - 0.006 16.6 0.0 0.009 16.0 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cytidylate_kin PF02224.18 gi|119718928|ref|YP_919423.1| - 0.007 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase Nudix_N_2 PF14803.6 gi|119718928|ref|YP_919423.1| - 0.0071 16.2 1.2 4.9 7.2 0.1 2.7 2 0 0 2 2 2 2 Nudix N-terminal Trm112p PF03966.16 gi|119718928|ref|YP_919423.1| - 0.0072 16.9 0.6 0.012 16.2 0.0 1.7 2 0 0 2 2 1 1 Trm112p-like protein DZR PF12773.7 gi|119718928|ref|YP_919423.1| - 0.008 16.2 0.2 0.014 15.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|119718928|ref|YP_919423.1| - 0.0086 15.6 1.2 0.019 14.5 1.2 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|119718928|ref|YP_919423.1| - 0.016 15.4 0.8 2 8.7 0.1 2.5 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|119718928|ref|YP_919423.1| - 0.016 15.3 0.6 0.032 14.3 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_33 PF13671.6 gi|119718928|ref|YP_919423.1| - 0.018 15.2 0.1 0.055 13.6 0.0 1.9 2 1 0 2 2 1 0 AAA domain zf-RRN7 PF11781.8 gi|119718928|ref|YP_919423.1| - 0.025 14.2 3.4 1.1 9.0 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 AAA_28 PF13521.6 gi|119718928|ref|YP_919423.1| - 0.044 14.0 0.0 0.064 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain zf-C4_Topoisom PF01396.19 gi|119718928|ref|YP_919423.1| - 0.059 13.2 1.0 1.4 8.8 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|119718928|ref|YP_919423.1| - 0.14 12.8 1.7 9.4 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AAA PF00004.29 gi|119718928|ref|YP_919423.1| - 0.18 12.2 0.0 0.27 11.7 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) OrfB_Zn_ribbon PF07282.11 gi|119718928|ref|YP_919423.1| - 0.21 11.5 1.3 0.58 10.1 1.3 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|119718928|ref|YP_919423.1| - 0.22 11.3 4.0 0.94 9.3 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|119718928|ref|YP_919423.1| - 5.9 7.0 8.0 0.55 10.2 1.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) AAA_assoc_C PF09821.9 gi|119718930|ref|YP_919425.1| - 2.7e-23 82.8 0.0 3.6e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain BPD_transp_1 PF00528.22 gi|119718931|ref|YP_919426.1| - 1.2e-25 90.4 44.5 8.1e-15 55.0 13.6 2.8 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component FUSC-like PF12805.7 gi|119718931|ref|YP_919426.1| - 0.23 10.5 4.3 0.66 9.0 4.3 1.8 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS ABC_tran PF00005.27 gi|119718932|ref|YP_919427.1| - 1.5e-28 100.0 0.0 2.3e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119718932|ref|YP_919427.1| - 1.5e-07 31.5 0.5 0.00083 19.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|119718932|ref|YP_919427.1| - 0.00019 21.9 0.0 0.00024 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119718932|ref|YP_919427.1| - 0.00057 19.8 0.0 0.00099 19.0 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|119718932|ref|YP_919427.1| - 0.00072 20.0 0.0 0.0042 17.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|119718932|ref|YP_919427.1| - 0.0012 19.4 0.2 0.0018 18.9 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119718932|ref|YP_919427.1| - 0.0025 18.1 0.0 0.0044 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119718932|ref|YP_919427.1| - 0.0035 16.8 0.0 0.33 10.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|119718932|ref|YP_919427.1| - 0.0047 16.9 0.0 0.0083 16.1 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|119718932|ref|YP_919427.1| - 0.0049 16.1 0.1 0.033 13.4 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain NACHT PF05729.12 gi|119718932|ref|YP_919427.1| - 0.008 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_28 PF13521.6 gi|119718932|ref|YP_919427.1| - 0.014 15.6 0.1 0.033 14.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|119718932|ref|YP_919427.1| - 0.017 15.0 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|119718932|ref|YP_919427.1| - 0.026 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|119718932|ref|YP_919427.1| - 0.043 13.5 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|119718932|ref|YP_919427.1| - 0.058 13.4 0.0 0.16 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|119718932|ref|YP_919427.1| - 0.059 13.9 0.1 0.14 12.7 0.1 1.6 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.23 gi|119718932|ref|YP_919427.1| - 0.19 11.8 0.0 0.47 10.5 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|119718932|ref|YP_919427.1| - 0.19 12.1 0.1 0.62 10.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain Cupin_2 PF07883.11 gi|119718933|ref|YP_919428.1| - 5.1e-05 22.9 0.1 7.6e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Cupin domain cNMP_binding PF00027.29 gi|119718933|ref|YP_919428.1| - 0.054 13.6 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain DUF3274 PF11678.8 gi|119718933|ref|YP_919428.1| - 0.066 12.5 0.0 0.078 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3274) 3-HAO PF06052.12 gi|119718933|ref|YP_919428.1| - 0.096 12.3 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Nuc_deoxyrib_tr PF05014.15 gi|119718935|ref|YP_919430.1| - 2.7e-11 43.6 0.0 3.2e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase TFA2_Winged_2 PF18121.1 gi|119718935|ref|YP_919430.1| - 0.012 15.3 0.1 0.65 9.7 0.0 2.4 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 DUF4129 PF13559.6 gi|119718935|ref|YP_919430.1| - 0.12 12.6 0.2 0.46 10.8 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4129) AsnC_trans_reg PF01037.21 gi|119718936|ref|YP_919431.1| - 5.3e-21 74.4 0.2 8.6e-21 73.7 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|119718936|ref|YP_919431.1| - 3.6e-14 52.1 2.3 5.3e-14 51.5 1.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|119718936|ref|YP_919431.1| - 2e-11 43.5 0.4 4.4e-11 42.4 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|119718936|ref|YP_919431.1| - 1.2e-05 25.0 0.1 2.1e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|119718936|ref|YP_919431.1| - 0.0012 18.7 0.1 0.0027 17.6 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|119718936|ref|YP_919431.1| - 0.0025 17.6 0.1 0.0071 16.2 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|119718936|ref|YP_919431.1| - 0.0037 17.2 0.1 0.0096 15.8 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|119718936|ref|YP_919431.1| - 0.0071 16.4 0.1 0.012 15.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|119718936|ref|YP_919431.1| - 0.045 14.3 0.1 0.12 12.9 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|119718936|ref|YP_919431.1| - 0.07 13.0 0.1 0.21 11.5 0.1 1.7 1 0 0 1 1 1 0 MarR family LAB_N PF07578.11 gi|119718938|ref|YP_919433.1| - 0.0031 17.6 0.6 0.0049 16.9 0.6 1.5 1 1 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain Imp-YgjV PF10688.9 gi|119718938|ref|YP_919433.1| - 0.042 13.7 0.5 0.048 13.5 0.5 1.2 1 0 0 1 1 1 0 Bacterial inner membrane protein HAD_2 PF13419.6 gi|119718939|ref|YP_919434.1| - 1.8e-15 57.5 0.0 2.2e-15 57.2 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119718939|ref|YP_919434.1| - 4.3e-12 46.8 0.0 6.6e-11 42.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119718939|ref|YP_919434.1| - 4.1e-09 36.4 0.0 7.4e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HTH_12 PF08461.10 gi|119718940|ref|YP_919435.1| - 0.00018 21.4 0.0 0.00042 20.2 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|119718940|ref|YP_919435.1| - 0.0011 18.8 0.1 0.002 18.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4443 PF14544.6 gi|119718940|ref|YP_919435.1| - 0.018 15.3 0.0 0.029 14.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) PaaX PF07848.12 gi|119718940|ref|YP_919435.1| - 0.042 14.1 0.1 0.078 13.2 0.1 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_24 PF13412.6 gi|119718940|ref|YP_919435.1| - 0.049 13.2 0.1 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|119718940|ref|YP_919435.1| - 0.059 13.4 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|119718940|ref|YP_919435.1| - 0.11 12.9 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4430 PF14478.6 gi|119718941|ref|YP_919436.1| - 9.6e-10 38.9 1.1 2.1e-09 37.8 1.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4430) Imm58 PF15581.6 gi|119718941|ref|YP_919436.1| - 0.26 11.4 1.4 1.7 8.8 0.4 2.3 1 1 1 2 2 2 0 Immunity protein 58 ECF-ribofla_trS PF07155.12 gi|119718942|ref|YP_919437.1| - 2.7e-07 30.7 15.3 5.7e-07 29.7 14.8 1.7 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|119718942|ref|YP_919437.1| - 0.0018 18.4 21.7 0.0064 16.6 21.7 1.8 1 1 0 1 1 1 1 ECF transporter, substrate-specific component FixQ PF05545.11 gi|119718943|ref|YP_919438.1| - 0.048 13.6 0.9 0.048 13.6 0.9 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ 7tm_7 PF08395.12 gi|119718943|ref|YP_919438.1| - 0.062 12.5 3.2 0.068 12.4 3.2 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor Defensin_big PF14862.6 gi|119718943|ref|YP_919438.1| - 4.7 7.6 7.0 0.54 10.6 0.8 2.2 2 1 0 2 2 2 0 Big defensin Thioredoxin_4 PF13462.6 gi|119718944|ref|YP_919439.1| - 4e-06 27.1 0.0 7.1e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|119718944|ref|YP_919439.1| - 0.00061 20.2 0.0 0.0041 17.6 0.0 2.3 2 1 0 2 2 2 1 Thioredoxin-like domain CBP_GIL PF10995.8 gi|119718944|ref|YP_919439.1| - 0.14 10.8 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 Cellulose biosynthesis GIL Aminotran_1_2 PF00155.21 gi|119718945|ref|YP_919440.1| - 3.6e-62 210.6 0.0 4.4e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|119718945|ref|YP_919440.1| - 1.5e-09 37.7 0.0 2.9e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|119718945|ref|YP_919440.1| - 2.1e-06 26.9 0.0 1.6e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|119718945|ref|YP_919440.1| - 8e-06 25.3 0.0 1.2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|119718945|ref|YP_919440.1| - 0.00036 19.2 0.0 0.00052 18.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CBS PF00571.28 gi|119718945|ref|YP_919440.1| - 0.01 16.2 0.5 1.2 9.6 0.0 3.7 4 0 0 4 4 4 0 CBS domain TP_methylase PF00590.20 gi|119718945|ref|YP_919440.1| - 0.027 14.4 0.0 0.22 11.4 0.0 2.5 3 0 0 3 3 3 0 Tetrapyrrole (Corrin/Porphyrin) Methylases ComA PF02679.15 gi|119718945|ref|YP_919440.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) PIN PF01850.21 gi|119718946|ref|YP_919441.1| - 2.4e-13 50.7 5.1 2.8e-13 50.5 5.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|119718946|ref|YP_919441.1| - 0.001 19.3 0.4 0.012 15.9 0.0 2.2 1 1 0 2 2 2 1 PIN like domain PIN_5 PF08745.11 gi|119718946|ref|YP_919441.1| - 0.019 14.4 0.1 0.07 12.5 0.0 1.8 2 0 0 2 2 2 0 PINc domain ribonuclease DUF3375 PF11855.8 gi|119718946|ref|YP_919441.1| - 0.02 13.8 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) PIN_12 PF16289.5 gi|119718946|ref|YP_919441.1| - 0.092 13.2 0.8 0.12 12.9 0.8 1.5 1 1 0 1 1 1 0 PIN domain PIN_4 PF13638.6 gi|119718946|ref|YP_919441.1| - 0.15 12.3 0.7 1.3 9.4 0.7 2.0 1 1 0 1 1 1 0 PIN domain Epimerase PF01370.21 gi|119718949|ref|YP_919444.1| - 1.7e-55 188.2 0.1 2e-55 187.9 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|119718949|ref|YP_919444.1| - 2.1e-49 168.7 0.0 8.9e-49 166.7 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|119718949|ref|YP_919444.1| - 7.1e-33 113.8 0.0 9.1e-33 113.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|119718949|ref|YP_919444.1| - 1.4e-20 73.6 0.0 1.7e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|119718949|ref|YP_919444.1| - 9e-18 64.4 0.0 5.4e-17 61.9 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|119718949|ref|YP_919444.1| - 5.8e-12 45.9 0.5 9.4e-12 45.2 0.5 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|119718949|ref|YP_919444.1| - 6.5e-12 45.5 0.1 1.2e-07 31.5 0.3 2.1 2 0 0 2 2 2 2 NmrA-like family NAD_binding_4 PF07993.12 gi|119718949|ref|YP_919444.1| - 6.3e-10 38.7 0.3 6.2e-09 35.4 0.0 2.3 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.25 gi|119718949|ref|YP_919444.1| - 1.1e-05 24.9 0.1 2.6e-05 23.8 0.1 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|119718949|ref|YP_919444.1| - 1.2e-05 25.3 0.1 2.2e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|119718949|ref|YP_919444.1| - 6.6e-05 22.6 0.1 0.00014 21.5 0.1 1.5 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 gi|119718949|ref|YP_919444.1| - 0.0021 18.3 0.1 0.0038 17.5 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|119718949|ref|YP_919444.1| - 0.0029 17.8 0.1 0.0073 16.5 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|119718949|ref|YP_919444.1| - 0.0062 16.1 0.0 0.013 15.1 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|119718949|ref|YP_919444.1| - 0.0071 16.0 0.0 0.024 14.2 0.0 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|119718949|ref|YP_919444.1| - 0.0071 16.5 0.1 0.037 14.2 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|119718949|ref|YP_919444.1| - 0.014 15.3 0.1 0.021 14.7 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_transf_4 PF13439.6 gi|119718949|ref|YP_919444.1| - 0.032 14.2 0.4 0.079 13.0 0.2 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Ldh_1_N PF00056.23 gi|119718949|ref|YP_919444.1| - 0.096 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain UPF0180 PF03698.13 gi|119718949|ref|YP_919444.1| - 0.12 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) 2-Hacid_dh_C PF02826.19 gi|119718949|ref|YP_919444.1| - 0.2 11.0 0.2 0.68 9.3 0.1 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rubrerythrin PF02915.17 gi|119718951|ref|YP_919446.1| - 2.2e-06 28.1 0.8 1.5e-05 25.4 0.8 1.9 1 1 0 1 1 1 1 Rubrerythrin FA_desaturase_2 PF03405.14 gi|119718951|ref|YP_919446.1| - 0.0029 16.5 0.0 0.084 11.7 0.0 2.0 1 1 1 2 2 2 2 Fatty acid desaturase Ferritin PF00210.24 gi|119718951|ref|YP_919446.1| - 0.0038 17.2 0.7 0.0055 16.6 0.7 1.4 1 1 0 1 1 1 1 Ferritin-like domain Imm30 PF15565.6 gi|119718951|ref|YP_919446.1| - 0.028 14.5 0.4 0.49 10.5 0.8 2.0 1 1 1 2 2 2 0 Immunity protein 30 DUF4806 PF16064.5 gi|119718951|ref|YP_919446.1| - 0.073 13.4 0.3 0.13 12.6 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4806) GGDEF_2 PF17853.1 gi|119718952|ref|YP_919447.1| - 0.032 14.5 0.1 0.41 10.9 0.0 2.0 1 1 1 2 2 2 0 GGDEF-like domain DUF2703 PF10865.8 gi|119718952|ref|YP_919447.1| - 0.12 12.6 0.2 9.4 6.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) NLE PF08154.12 gi|119718952|ref|YP_919447.1| - 0.13 12.8 0.2 22 5.7 0.0 2.3 1 1 1 2 2 2 0 NLE (NUC135) domain TrmB PF01978.19 gi|119718953|ref|YP_919448.1| - 4.8e-05 23.2 0.0 0.00012 21.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|119718953|ref|YP_919448.1| - 0.039 13.4 0.2 0.075 12.5 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 ETC_C1_NDUFA5 PF04716.14 gi|119718955|ref|YP_919450.1| - 0.099 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 ETC complex I subunit conserved region CYTH PF01928.21 gi|119718956|ref|YP_919451.1| - 3.6e-32 111.7 0.5 4.4e-32 111.5 0.5 1.1 1 0 0 1 1 1 1 CYTH domain F-box PF00646.33 gi|119718956|ref|YP_919451.1| - 0.0045 16.8 0.0 0.045 13.6 0.0 2.2 2 0 0 2 2 2 1 F-box domain ECF-ribofla_trS PF07155.12 gi|119718957|ref|YP_919452.1| - 0.62 10.1 9.7 0.061 13.3 4.8 1.7 2 0 0 2 2 2 0 ECF-type riboflavin transporter, S component Pyr_redox_2 PF07992.14 gi|119718958|ref|YP_919453.1| - 4.3e-38 131.2 1.0 5.5e-38 130.9 1.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119718958|ref|YP_919453.1| - 1.2e-13 51.0 0.1 9e-10 38.3 0.0 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119718958|ref|YP_919453.1| - 1.1e-09 38.3 4.9 1.9e-05 24.5 2.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|119718958|ref|YP_919453.1| - 3.6e-07 29.6 5.4 3e-06 26.6 3.0 2.6 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|119718958|ref|YP_919453.1| - 9.7e-07 28.5 1.9 4.9e-06 26.1 0.7 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|119718958|ref|YP_919453.1| - 2.9e-06 27.7 0.1 0.0058 17.2 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119718958|ref|YP_919453.1| - 1.5e-05 24.3 4.5 0.00026 20.2 1.5 2.9 2 1 1 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|119718958|ref|YP_919453.1| - 3e-05 22.9 1.5 0.016 13.9 0.8 2.2 1 1 1 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|119718958|ref|YP_919453.1| - 5.7e-05 22.5 0.2 0.00016 21.0 0.2 1.7 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|119718958|ref|YP_919453.1| - 0.00013 22.1 2.1 0.00014 22.0 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|119718958|ref|YP_919453.1| - 0.0016 18.4 1.3 0.11 12.5 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|119718958|ref|YP_919453.1| - 0.012 14.7 0.2 0.021 13.9 0.2 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|119718958|ref|YP_919453.1| - 0.016 14.5 0.6 0.035 13.4 0.6 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|119718958|ref|YP_919453.1| - 0.081 12.2 0.2 0.13 11.5 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.14 gi|119718958|ref|YP_919453.1| - 0.18 10.6 2.3 0.19 10.5 1.3 1.6 1 1 1 2 2 2 0 Tryptophan halogenase MCRA PF06100.11 gi|119718958|ref|YP_919453.1| - 0.35 9.6 0.4 1.4 7.6 0.3 1.8 2 0 0 2 2 2 0 MCRA family Radical_SAM PF04055.21 gi|119718959|ref|YP_919454.1| - 2.7e-24 86.4 0.0 5.8e-24 85.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DZR PF12773.7 gi|119718959|ref|YP_919454.1| - 0.0016 18.4 0.1 0.0016 18.4 0.1 2.6 3 0 0 3 3 3 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|119718959|ref|YP_919454.1| - 0.0078 15.8 1.2 0.89 9.3 0.1 2.5 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|119718959|ref|YP_919454.1| - 0.0087 16.1 2.6 2.4 8.3 0.1 2.9 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|119718959|ref|YP_919454.1| - 0.0089 15.4 7.7 0.11 11.9 0.1 2.9 3 0 0 3 3 2 2 zinc-ribbon domain Fer4_12 PF13353.6 gi|119718959|ref|YP_919454.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Ogr_Delta PF04606.12 gi|119718959|ref|YP_919454.1| - 0.077 13.0 1.7 4.9 7.2 0.1 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DiS_P_DiS PF06750.13 gi|119718959|ref|YP_919454.1| - 0.12 12.6 0.2 0.29 11.3 0.2 1.6 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_2 PF13240.6 gi|119718959|ref|YP_919454.1| - 0.12 12.2 0.2 0.12 12.2 0.2 3.1 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119718959|ref|YP_919454.1| - 0.16 12.0 0.7 0.98 9.4 0.6 2.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.14 gi|119718959|ref|YP_919454.1| - 0.5 10.2 2.0 0.76 9.7 0.1 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C4_Topoisom PF01396.19 gi|119718959|ref|YP_919454.1| - 0.78 9.6 0.0 0.78 9.6 0.0 3.6 4 0 0 4 4 3 0 Topoisomerase DNA binding C4 zinc finger DpnI PF06044.12 gi|119718959|ref|YP_919454.1| - 1 9.0 3.6 3.8 7.1 0.8 2.6 2 1 0 2 2 2 0 Dam-replacing family zinc-ribbons_6 PF07191.12 gi|119718959|ref|YP_919454.1| - 1.1 9.3 6.0 1.2 9.2 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbons HypA PF01155.19 gi|119718959|ref|YP_919454.1| - 1.2 9.2 3.3 3.5 7.7 0.1 2.7 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|119718959|ref|YP_919454.1| - 3.5 8.4 8.7 6.3 7.6 0.2 2.8 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.13 gi|119718959|ref|YP_919454.1| - 3.8 7.3 9.2 2.5 7.9 0.1 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|119718959|ref|YP_919454.1| - 8 6.5 10.4 2.4 8.2 0.2 3.6 4 0 0 4 4 4 0 Transposase zinc-ribbon domain HD PF01966.22 gi|119718960|ref|YP_919455.1| - 6.5e-09 36.1 0.1 1.2e-08 35.2 0.1 1.6 1 1 0 1 1 1 1 HD domain DSPc PF00782.20 gi|119718960|ref|YP_919455.1| - 0.00019 21.3 0.0 0.00028 20.7 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain HDOD PF08668.12 gi|119718960|ref|YP_919455.1| - 0.0026 17.3 0.0 0.0047 16.4 0.0 1.5 1 0 0 1 1 1 1 HDOD domain Y_phosphatase3 PF13350.6 gi|119718960|ref|YP_919455.1| - 0.0061 16.6 0.0 0.024 14.6 0.0 1.9 1 1 0 1 1 1 1 Tyrosine phosphatase family CDKN3 PF05706.12 gi|119718960|ref|YP_919455.1| - 0.0076 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.27 gi|119718960|ref|YP_919455.1| - 0.018 14.6 0.1 0.027 14.0 0.1 1.2 1 0 0 1 1 1 0 Protein-tyrosine phosphatase PmbA_TldD PF01523.16 gi|119718961|ref|YP_919456.1| - 6.3e-57 193.5 3.6 1e-56 192.9 3.6 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF3924 PF13062.6 gi|119718961|ref|YP_919456.1| - 0.017 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3924) PmbA_TldD PF01523.16 gi|119718962|ref|YP_919457.1| - 2.4e-42 145.7 0.5 3.5e-42 145.2 0.1 1.5 2 0 0 2 2 2 1 Putative modulator of DNA gyrase FdhE PF04216.12 gi|119718963|ref|YP_919458.1| - 1.3e-14 54.8 0.0 1.8e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation OrfB_Zn_ribbon PF07282.11 gi|119718963|ref|YP_919458.1| - 0.009 15.9 5.5 0.18 11.7 0.4 2.5 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Elf1 PF05129.13 gi|119718963|ref|YP_919458.1| - 0.012 15.7 1.4 4.8 7.3 0.2 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.12 gi|119718963|ref|YP_919458.1| - 0.012 15.1 12.0 0.017 14.6 0.6 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.12 gi|119718963|ref|YP_919458.1| - 0.024 14.9 2.3 0.024 14.9 2.3 3.4 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.6 gi|119718963|ref|YP_919458.1| - 0.028 14.3 7.7 0.066 13.1 2.0 2.7 2 1 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|119718963|ref|YP_919458.1| - 0.03 14.3 8.3 0.26 11.3 0.3 2.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|119718963|ref|YP_919458.1| - 0.068 13.2 6.0 0.15 12.1 2.8 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|119718963|ref|YP_919458.1| - 0.12 12.8 9.1 1.1 9.7 1.8 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|119718963|ref|YP_919458.1| - 0.13 11.7 8.2 0.081 12.3 1.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger PhnA_Zn_Ribbon PF08274.12 gi|119718963|ref|YP_919458.1| - 0.16 11.9 4.5 5.2 7.1 0.1 3.1 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zf-Di19 PF05605.12 gi|119718963|ref|YP_919458.1| - 0.32 11.3 2.6 17 5.8 0.4 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding FpoO PF10621.9 gi|119718963|ref|YP_919458.1| - 0.38 11.1 3.0 12 6.2 0.9 2.5 1 1 0 2 2 2 0 F420H2 dehydrogenase subunit FpoO NMD3 PF04981.13 gi|119718963|ref|YP_919458.1| - 0.44 10.0 1.8 0.97 8.8 1.8 1.5 1 0 0 1 1 1 0 NMD3 family Cys_rich_KTR PF14205.6 gi|119718963|ref|YP_919458.1| - 0.71 9.7 2.8 19 5.1 0.4 2.5 2 0 0 2 2 2 0 Cysteine-rich KTR zf-C3HC4_3 PF13920.6 gi|119718963|ref|YP_919458.1| - 0.81 9.6 7.2 6 6.8 4.3 2.9 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Cys_rich_CPXG PF14255.6 gi|119718963|ref|YP_919458.1| - 0.93 9.4 3.3 10 6.1 0.1 2.9 2 1 1 3 3 3 0 Cysteine-rich CPXCG DZR PF12773.7 gi|119718963|ref|YP_919458.1| - 1 9.4 8.4 15 5.7 8.8 2.3 1 1 1 2 2 2 0 Double zinc ribbon Prok-RING_4 PF14447.6 gi|119718963|ref|YP_919458.1| - 1.1 9.1 6.0 2.8 7.9 0.5 2.7 3 0 0 3 3 3 0 Prokaryotic RING finger family 4 DNA_ligase_ZBD PF03119.16 gi|119718963|ref|YP_919458.1| - 1.4 9.0 7.2 0.6 10.2 1.1 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF35_N PF12172.8 gi|119718963|ref|YP_919458.1| - 3.5 7.6 10.9 1.1 9.2 2.7 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_2 PF13639.6 gi|119718963|ref|YP_919458.1| - 9.4 6.7 7.9 63 4.0 7.5 2.3 1 1 1 2 2 2 0 Ring finger domain DUF89 PF01937.19 gi|119718964|ref|YP_919459.1| - 3.5e-44 151.2 0.0 3.9e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 UPRTase PF14681.6 gi|119718965|ref|YP_919460.1| - 8.1e-46 156.1 0.0 9.3e-46 155.9 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|119718965|ref|YP_919460.1| - 7.1e-09 35.4 0.0 1.3e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|119718965|ref|YP_919460.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase RHH_1 PF01402.21 gi|119718967|ref|YP_919462.1| - 0.025 14.5 7.4 0.38 10.7 3.5 3.2 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family CcdA PF07362.12 gi|119718967|ref|YP_919462.1| - 0.028 14.8 2.1 0.097 13.1 2.1 1.8 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA CoaE PF01121.20 gi|119718967|ref|YP_919462.1| - 0.034 13.8 2.1 0.039 13.6 1.8 1.3 1 1 0 1 1 1 0 Dephospho-CoA kinase PSK_trans_fac PF07704.11 gi|119718967|ref|YP_919462.1| - 0.13 13.0 4.7 0.22 12.3 4.7 1.4 1 1 0 1 1 1 0 Rv0623-like transcription factor PIN PF01850.21 gi|119718968|ref|YP_919463.1| - 1.3e-14 54.7 1.3 1.5e-14 54.5 1.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|119718968|ref|YP_919463.1| - 2.1e-06 28.0 0.0 2.7e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain TauE PF01925.19 gi|119718969|ref|YP_919464.1| - 3.9e-44 151.1 44.6 4.4e-44 150.9 44.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE AA_permease_2 PF13520.6 gi|119718971|ref|YP_919466.1| - 5.2e-34 117.8 40.4 6.4e-34 117.5 40.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|119718971|ref|YP_919466.1| - 3.1e-33 115.1 36.7 4.3e-33 114.6 36.7 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|119718971|ref|YP_919466.1| - 5.7e-05 22.1 7.9 0.00013 20.9 7.9 1.5 1 0 0 1 1 1 1 Spore germination protein Pilin_N PF07790.11 gi|119718973|ref|YP_919468.1| - 0.41 11.6 12.3 0.72 10.8 11.2 2.0 1 1 1 2 2 2 0 Archaeal Type IV pilin, N-terminal DUF4191 PF13829.6 gi|119718973|ref|YP_919468.1| - 1 8.7 3.5 1.3 8.3 3.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4156 PF13698.6 gi|119718974|ref|YP_919469.1| - 0.072 13.4 0.1 0.13 12.6 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) DUF11 PF01345.18 gi|119718974|ref|YP_919469.1| - 0.11 12.8 3.6 0.26 11.6 1.1 2.5 2 1 0 2 2 2 0 Domain of unknown function DUF11 HlyD PF00529.20 gi|119718974|ref|YP_919469.1| - 1.9 8.4 6.9 1.2e+02 2.7 6.9 3.0 1 1 0 1 1 1 0 HlyD membrane-fusion protein of T1SS Thioredoxin_3 PF13192.6 gi|119718976|ref|YP_919471.1| - 3e-05 24.0 0.0 0.00018 21.5 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin domain CENP-C_C PF11699.8 gi|119718976|ref|YP_919471.1| - 0.18 12.1 0.1 2.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Mif2/CENP-C like Amidohydro_1 PF01979.20 gi|119718977|ref|YP_919472.1| - 1.1e-42 146.7 0.0 1.3e-42 146.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|119718977|ref|YP_919472.1| - 7.3e-13 48.8 2.9 2e-05 24.3 0.5 3.1 3 0 0 3 3 3 2 Amidohydrolase family PNP_UDP_1 PF01048.20 gi|119718978|ref|YP_919473.1| - 2.2e-42 144.9 0.5 2.6e-42 144.7 0.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Methyltransf_21 PF05050.12 gi|119718979|ref|YP_919474.1| - 2.1e-10 40.9 0.0 2.9e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|119718979|ref|YP_919474.1| - 4.1e-09 36.5 0.0 9.2e-09 35.3 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein MTS PF05175.14 gi|119718979|ref|YP_919474.1| - 4.3e-06 26.4 0.0 2.2e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain DUF2381 PF09544.10 gi|119718979|ref|YP_919474.1| - 0.0042 16.7 0.1 0.0062 16.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2381) V_cholerae_RfbT PF05575.11 gi|119718979|ref|YP_919474.1| - 0.03 13.6 0.0 0.043 13.1 0.0 1.1 1 0 0 1 1 1 0 Vibrio cholerae RfbT protein YEATS PF03366.16 gi|119718979|ref|YP_919474.1| - 0.11 12.5 0.1 0.29 11.1 0.1 1.6 1 1 0 1 1 1 0 YEATS family Methyltransf_25 PF13649.6 gi|119718979|ref|YP_919474.1| - 0.17 12.6 0.0 0.51 11.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|119718979|ref|YP_919474.1| - 0.2 11.6 0.0 0.31 11.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PNP_UDP_1 PF01048.20 gi|119718980|ref|YP_919475.1| - 4.8e-35 120.9 0.4 5.7e-35 120.7 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF659 PF04937.15 gi|119718981|ref|YP_919476.1| - 0.063 13.1 0.1 0.68 9.8 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF 659) ECF-ribofla_trS PF07155.12 gi|119718982|ref|YP_919477.1| - 2.1e-26 92.9 15.5 2.7e-26 92.6 15.5 1.1 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|119718982|ref|YP_919477.1| - 3e-09 37.2 15.4 4.1e-09 36.8 15.4 1.2 1 0 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|119718982|ref|YP_919477.1| - 0.0043 16.6 11.3 0.0063 16.0 11.3 1.3 1 0 0 1 1 1 1 5TMR of 5TMR-LYT bPH_2 PF03703.14 gi|119718983|ref|YP_919478.1| - 1.4e-05 25.2 0.1 2.6e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain TMEM40 PF15817.5 gi|119718983|ref|YP_919478.1| - 1.1 9.0 6.3 0.73 9.6 1.8 2.2 1 1 1 2 2 2 0 Transmembrane protein 40 family CbiQ PF02361.16 gi|119718984|ref|YP_919479.1| - 1.6e-12 47.5 13.6 2.8e-12 46.7 13.6 1.4 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|119718985|ref|YP_919480.1| - 1.1e-47 162.0 0.0 2.2e-23 83.3 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|119718985|ref|YP_919480.1| - 2.7e-25 89.8 4.8 7.1e-07 29.3 0.1 4.2 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119718985|ref|YP_919480.1| - 2.8e-13 49.8 0.0 0.0031 17.0 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119718985|ref|YP_919480.1| - 7.3e-13 48.0 0.4 5.5e-06 26.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119718985|ref|YP_919480.1| - 1.4e-09 38.6 2.6 0.00028 21.3 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|119718985|ref|YP_919480.1| - 1.7e-09 38.4 0.1 9.6e-05 23.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|119718985|ref|YP_919480.1| - 7.2e-09 36.0 0.2 0.0017 18.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|119718985|ref|YP_919480.1| - 2.8e-07 30.3 1.0 0.017 14.7 0.1 2.9 3 0 0 3 3 2 2 AAA domain T2SSE PF00437.20 gi|119718985|ref|YP_919480.1| - 3.2e-07 29.7 0.3 0.043 12.9 0.1 3.0 3 0 0 3 3 3 2 Type II/IV secretion system protein AAA_15 PF13175.6 gi|119718985|ref|YP_919480.1| - 3.6e-07 30.2 0.0 0.00053 19.8 0.0 3.4 4 0 0 4 4 4 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119718985|ref|YP_919480.1| - 9.2e-07 28.9 0.8 0.02 14.8 0.1 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_30 PF13604.6 gi|119718985|ref|YP_919480.1| - 2.5e-06 27.3 0.1 0.0027 17.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|119718985|ref|YP_919480.1| - 4.8e-06 26.6 0.1 0.018 14.9 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_5 PF07728.14 gi|119718985|ref|YP_919480.1| - 3.3e-05 23.9 1.2 0.092 12.7 0.1 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119718985|ref|YP_919480.1| - 3.4e-05 24.3 1.1 0.031 14.7 0.0 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|119718985|ref|YP_919480.1| - 4.7e-05 23.2 0.2 0.032 14.0 0.0 2.7 3 0 0 3 3 2 1 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|119718985|ref|YP_919480.1| - 6.9e-05 22.3 0.7 0.18 11.2 0.0 2.7 3 1 0 3 3 2 2 FtsK/SpoIIIE family AAA_33 PF13671.6 gi|119718985|ref|YP_919480.1| - 0.0001 22.5 0.8 0.13 12.4 0.1 2.6 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|119718985|ref|YP_919480.1| - 0.00022 21.3 0.3 0.069 13.0 0.0 2.6 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea cobW PF02492.19 gi|119718985|ref|YP_919480.1| - 0.00022 20.9 1.6 0.1 12.2 0.1 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|119718985|ref|YP_919480.1| - 0.00039 19.9 4.8 0.43 9.9 0.0 3.2 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|119718985|ref|YP_919480.1| - 0.00044 19.9 0.0 0.0086 15.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|119718985|ref|YP_919480.1| - 0.00048 20.1 0.4 0.77 9.7 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_24 PF13479.6 gi|119718985|ref|YP_919480.1| - 0.00062 19.5 2.0 0.77 9.5 0.1 2.8 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|119718985|ref|YP_919480.1| - 0.00066 20.0 0.9 0.18 12.1 0.1 2.8 3 0 0 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|119718985|ref|YP_919480.1| - 0.0011 19.2 2.1 0.33 11.2 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.6 gi|119718985|ref|YP_919480.1| - 0.0012 18.9 0.3 1.4 8.9 0.1 3.0 3 0 0 3 3 3 1 AAA domain ABC_ATPase PF09818.9 gi|119718985|ref|YP_919480.1| - 0.0016 17.3 0.3 0.028 13.2 0.0 2.6 3 0 0 3 3 3 1 Predicted ATPase of the ABC class AAA_18 PF13238.6 gi|119718985|ref|YP_919480.1| - 0.0019 18.8 0.7 1.3 9.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|119718985|ref|YP_919480.1| - 0.0025 17.9 0.6 2.3 8.3 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|119718985|ref|YP_919480.1| - 0.0025 17.4 0.1 1.8 8.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|119718985|ref|YP_919480.1| - 0.0033 16.7 0.2 1.2 8.3 0.1 2.3 2 0 0 2 2 2 1 TIP49 P-loop domain ATP_bind_1 PF03029.17 gi|119718985|ref|YP_919480.1| - 0.0042 16.9 0.3 0.81 9.4 0.1 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 gi|119718985|ref|YP_919480.1| - 0.0044 17.4 0.2 2.6 8.5 0.0 2.3 2 0 0 2 2 2 1 RNA helicase SRP54 PF00448.22 gi|119718985|ref|YP_919480.1| - 0.005 16.5 1.5 0.3 10.7 0.2 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|119718985|ref|YP_919480.1| - 0.0073 16.2 1.6 1.1 9.1 0.2 3.1 3 0 0 3 3 3 1 NTPase TsaE PF02367.17 gi|119718985|ref|YP_919480.1| - 0.0074 16.3 0.2 2.8 8.0 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|119718985|ref|YP_919480.1| - 0.0086 15.8 0.8 0.84 9.4 0.1 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.20 gi|119718985|ref|YP_919480.1| - 0.01 15.0 0.3 3.8 6.6 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit RuvB_N PF05496.12 gi|119718985|ref|YP_919480.1| - 0.011 15.5 0.6 2.3 8.0 0.0 3.0 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain PhoH PF02562.16 gi|119718985|ref|YP_919480.1| - 0.018 14.5 0.1 3.5 7.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_13 PF13166.6 gi|119718985|ref|YP_919480.1| - 0.025 13.3 0.0 0.28 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|119718985|ref|YP_919480.1| - 0.025 13.7 0.0 0.73 8.9 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase DLIC PF05783.11 gi|119718985|ref|YP_919480.1| - 0.031 13.1 0.5 1.3 7.8 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) TniB PF05621.11 gi|119718985|ref|YP_919480.1| - 0.032 13.7 0.0 13 5.1 0.0 3.0 3 0 0 3 3 3 0 Bacterial TniB protein AAA_11 PF13086.6 gi|119718985|ref|YP_919480.1| - 0.046 13.5 0.0 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|119718985|ref|YP_919480.1| - 0.051 13.8 0.4 14 6.0 0.0 2.6 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase ATPase PF06745.13 gi|119718985|ref|YP_919480.1| - 0.052 12.9 2.9 5.6 6.2 0.0 3.9 4 1 1 5 5 4 0 KaiC Zeta_toxin PF06414.12 gi|119718985|ref|YP_919480.1| - 0.083 12.2 0.4 4.2 6.6 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_PrkA PF08298.11 gi|119718985|ref|YP_919480.1| - 0.098 11.5 1.3 1.2 8.0 0.1 2.5 3 0 0 3 3 2 0 PrkA AAA domain ATP-synt_ab PF00006.25 gi|119718985|ref|YP_919480.1| - 0.13 11.9 0.0 0.67 9.6 0.0 1.9 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|119718985|ref|YP_919480.1| - 0.13 12.0 0.2 14 5.3 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|119718985|ref|YP_919480.1| - 0.16 11.2 0.5 6.3 5.9 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain SRPRB PF09439.10 gi|119718985|ref|YP_919480.1| - 0.2 11.1 0.1 14 5.0 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|119718985|ref|YP_919480.1| - 0.21 11.7 0.5 13 5.8 0.1 2.3 2 0 0 2 2 2 0 Dynamin family AAA_17 PF13207.6 gi|119718985|ref|YP_919480.1| - 0.23 11.9 1.4 14 6.1 0.1 2.8 2 0 0 2 2 2 0 AAA domain ABC_cobalt PF09819.9 gi|119718986|ref|YP_919481.1| - 2.2e-33 115.0 15.2 2.2e-33 115.0 15.2 1.9 1 1 1 2 2 2 1 ABC-type cobalt transport system, permease component ThiP_synth PF10120.9 gi|119718987|ref|YP_919482.1| - 2.9e-44 150.6 0.1 4e-44 150.1 0.1 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|119718987|ref|YP_919482.1| - 2.4e-05 24.3 0.2 5.9e-05 23.0 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 gi|119718987|ref|YP_919482.1| - 0.00037 20.4 0.1 0.0008 19.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|119718987|ref|YP_919482.1| - 0.0004 20.3 0.1 0.00081 19.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LacI PF00356.21 gi|119718987|ref|YP_919482.1| - 0.0015 18.3 0.2 0.0054 16.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family MarR_2 PF12802.7 gi|119718987|ref|YP_919482.1| - 0.0027 17.5 0.1 0.0072 16.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|119718987|ref|YP_919482.1| - 0.0075 16.0 0.1 0.082 12.7 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_31 PF13560.6 gi|119718987|ref|YP_919482.1| - 0.042 14.2 0.1 0.085 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Cro PF09048.10 gi|119718987|ref|YP_919482.1| - 0.07 13.2 0.1 0.19 11.8 0.1 1.7 1 0 0 1 1 1 0 Cro HTH_24 PF13412.6 gi|119718987|ref|YP_919482.1| - 0.084 12.5 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|119718987|ref|YP_919482.1| - 0.095 12.6 0.1 0.26 11.2 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family YdaS_antitoxin PF15943.5 gi|119718987|ref|YP_919482.1| - 0.1 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_ISL3 PF13542.6 gi|119718987|ref|YP_919482.1| - 0.14 11.6 0.1 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.22 gi|119718987|ref|YP_919482.1| - 0.18 11.7 0.1 0.4 10.7 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|119718987|ref|YP_919482.1| - 0.63 9.8 2.2 0.73 9.6 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Regulator_TrmB PF11495.8 gi|119718988|ref|YP_919483.1| - 3e-59 200.0 0.2 3.7e-59 199.7 0.2 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|119718988|ref|YP_919483.1| - 6e-15 54.9 0.1 1.2e-14 53.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119718988|ref|YP_919483.1| - 0.00043 20.1 0.0 0.0013 18.6 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|119718988|ref|YP_919483.1| - 0.023 14.6 0.0 3.3 7.7 0.0 3.2 3 0 0 3 3 3 0 HTH domain HTH_Crp_2 PF13545.6 gi|119718988|ref|YP_919483.1| - 0.049 13.6 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Radical_SAM PF04055.21 gi|119718989|ref|YP_919484.1| - 4.3e-12 46.7 0.1 2.7e-10 40.9 0.0 2.8 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|119718989|ref|YP_919484.1| - 9.6e-12 45.0 0.0 2.8e-11 43.5 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|119718991|ref|YP_919486.1| - 2.9e-14 53.8 0.0 2.9e-14 53.8 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119718991|ref|YP_919486.1| - 2.6e-08 34.2 0.0 5.5e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119718991|ref|YP_919486.1| - 9.7e-07 28.9 0.0 1.9e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Prok-RING_2 PF14445.6 gi|119718991|ref|YP_919486.1| - 1 9.6 6.1 0.14 12.3 1.5 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 2 TRAPPC9-Trs120 PF08626.11 gi|119718992|ref|YP_919487.1| - 0.05 10.9 0.0 0.063 10.6 0.0 1.0 1 0 0 1 1 1 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit UPF0180 PF03698.13 gi|119718993|ref|YP_919488.1| - 0.036 14.2 0.1 0.048 13.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) PepSY_2 PF13670.6 gi|119718993|ref|YP_919488.1| - 0.086 12.8 0.3 0.11 12.5 0.3 1.1 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain NAD_binding_2 PF03446.15 gi|119718994|ref|YP_919489.1| - 3.2e-33 115.2 0.0 4.9e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|119718994|ref|YP_919489.1| - 8.3e-13 48.6 0.0 1.4e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|119718994|ref|YP_919489.1| - 2e-10 41.1 0.0 6.5e-10 39.5 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|119718994|ref|YP_919489.1| - 1e-06 28.2 0.0 1.4e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|119718994|ref|YP_919489.1| - 3.2e-05 24.0 0.0 0.00012 22.1 0.0 1.9 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|119718994|ref|YP_919489.1| - 0.00064 19.4 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_3 PF03447.16 gi|119718994|ref|YP_919489.1| - 0.0011 19.6 0.0 0.0029 18.3 0.0 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|119718994|ref|YP_919489.1| - 0.0013 18.4 0.0 0.34 10.5 0.0 2.4 1 1 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA PF01408.22 gi|119718994|ref|YP_919489.1| - 0.0027 18.5 0.0 0.0049 17.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|119718994|ref|YP_919489.1| - 0.0027 17.9 0.0 0.0058 16.9 0.0 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Glyco_trans_4_4 PF13579.6 gi|119718994|ref|YP_919489.1| - 0.0056 17.1 0.2 0.012 16.1 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain NAD_Gly3P_dh_N PF01210.23 gi|119718994|ref|YP_919489.1| - 0.05 13.6 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Bac_luciferase PF00296.20 gi|119718994|ref|YP_919489.1| - 0.082 12.3 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 Luciferase-like monooxygenase 3HCDH_N PF02737.18 gi|119718994|ref|YP_919489.1| - 0.088 12.7 0.0 0.21 11.5 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_transf_4 PF13439.6 gi|119718994|ref|YP_919489.1| - 0.15 12.1 0.2 0.38 10.7 0.1 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 TrkA_N PF02254.18 gi|119718994|ref|YP_919489.1| - 0.15 12.3 0.0 2 8.7 0.0 2.3 1 1 0 1 1 1 0 TrkA-N domain SIS PF01380.22 gi|119718994|ref|YP_919489.1| - 0.17 11.8 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 SIS domain YjbR PF04237.13 gi|119718997|ref|YP_919492.1| - 0.087 13.4 0.1 0.9 10.1 0.0 2.4 2 1 0 2 2 2 0 YjbR Ras PF00071.22 gi|119718998|ref|YP_919493.1| - 2.2e-38 131.4 0.0 2.5e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Ras family Roc PF08477.13 gi|119718998|ref|YP_919493.1| - 6.4e-24 84.5 0.0 7.9e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|119718998|ref|YP_919493.1| - 2.4e-09 36.9 0.0 2.9e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family Gtr1_RagA PF04670.12 gi|119718998|ref|YP_919493.1| - 2.7e-06 26.9 0.0 4e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region MMR_HSR1 PF01926.23 gi|119718998|ref|YP_919493.1| - 0.0028 17.7 0.0 0.004 17.2 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|119718998|ref|YP_919493.1| - 0.0059 17.0 0.0 0.0092 16.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119718998|ref|YP_919493.1| - 0.023 15.1 0.0 0.041 14.3 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119718998|ref|YP_919493.1| - 0.024 14.9 0.0 0.051 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|119718998|ref|YP_919493.1| - 0.04 13.9 0.0 0.091 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|119718998|ref|YP_919493.1| - 0.053 13.2 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|119718998|ref|YP_919493.1| - 0.08 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|119718998|ref|YP_919493.1| - 0.15 12.6 0.1 0.18 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain Aminotran_1_2 PF00155.21 gi|119718999|ref|YP_919494.1| - 9.6e-75 252.0 0.0 1.1e-74 251.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|119718999|ref|YP_919494.1| - 1e-08 34.9 0.0 1.4e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|119718999|ref|YP_919494.1| - 1.7e-06 26.8 0.0 2.7e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|119718999|ref|YP_919494.1| - 5e-06 25.7 0.0 1e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|119718999|ref|YP_919494.1| - 0.027 13.2 0.0 0.036 12.8 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain SIS PF01380.22 gi|119719003|ref|YP_919498.1| - 8e-48 161.6 0.2 4.1e-26 91.4 0.7 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|119719003|ref|YP_919498.1| - 6.1e-23 81.5 0.0 1.6e-22 80.1 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|119719003|ref|YP_919498.1| - 1.9e-18 66.5 0.0 5.6e-18 65.0 0.0 1.9 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|119719003|ref|YP_919498.1| - 0.0013 18.7 0.4 0.0046 17.0 0.0 2.1 2 1 1 3 3 3 1 SIS domain GATase_4 PF13230.6 gi|119719003|ref|YP_919498.1| - 0.0035 16.3 0.0 0.0066 15.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Hexapep PF00132.24 gi|119719004|ref|YP_919499.1| - 2.7e-11 42.7 5.0 6.1e-06 25.7 0.5 4.1 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|119719004|ref|YP_919499.1| - 3.2e-06 27.6 0.0 6e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|119719004|ref|YP_919499.1| - 0.0019 17.8 0.0 0.0026 17.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 gi|119719004|ref|YP_919499.1| - 0.011 15.5 0.5 0.23 11.2 0.0 3.0 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.26 gi|119719004|ref|YP_919499.1| - 0.035 13.9 0.0 0.061 13.1 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferase family 2 CTP_transf_3 PF02348.19 gi|119719004|ref|YP_919499.1| - 0.043 13.7 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase Glyco_tranf_2_3 PF13641.6 gi|119719005|ref|YP_919500.1| - 7.8e-21 75.0 0.8 2.3e-20 73.5 0.8 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|119719005|ref|YP_919500.1| - 1.2e-18 67.5 0.1 1.9e-18 66.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|119719005|ref|YP_919500.1| - 2.3e-14 53.7 10.2 9.9e-14 51.7 10.2 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|119719005|ref|YP_919500.1| - 3.8e-09 36.3 0.0 5.9e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.6 gi|119719005|ref|YP_919500.1| - 0.0029 17.3 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family Glyco_tranf_2_2 PF10111.9 gi|119719005|ref|YP_919500.1| - 0.02 14.4 0.2 0.041 13.4 0.1 1.6 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Cas6 PF09559.10 gi|119719006|ref|YP_919501.1| - 0.035 14.1 0.2 0.053 13.5 0.2 1.5 1 1 0 1 1 1 0 Cas6 Crispr DZR PF12773.7 gi|119719007|ref|YP_919502.1| - 0.00081 19.4 1.1 0.0011 18.9 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|119719007|ref|YP_919502.1| - 0.0017 18.2 4.0 0.33 10.9 0.5 2.2 2 0 0 2 2 2 2 SprT-like zinc ribbon domain HypA PF01155.19 gi|119719007|ref|YP_919502.1| - 0.0018 18.3 0.5 0.002 18.1 0.5 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|119719007|ref|YP_919502.1| - 0.0033 18.2 1.1 0.0035 18.0 1.1 1.0 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|119719007|ref|YP_919502.1| - 0.007 16.0 3.5 0.28 10.9 0.5 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119719007|ref|YP_919502.1| - 0.0081 16.1 2.6 0.03 14.3 0.0 2.0 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|119719007|ref|YP_919502.1| - 0.02 14.8 2.1 1 9.4 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|119719007|ref|YP_919502.1| - 0.02 15.0 1.1 0.085 13.0 1.1 1.8 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|119719007|ref|YP_919502.1| - 0.022 15.0 0.2 0.04 14.2 0.2 1.4 1 1 0 1 1 1 0 zinc-ribbon zf-LITAF-like PF10601.9 gi|119719007|ref|YP_919502.1| - 0.026 14.8 1.8 3.6 7.9 0.0 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain PknG_rubred PF16919.5 gi|119719007|ref|YP_919502.1| - 0.033 14.4 0.4 0.037 14.2 0.4 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain DUF1272 PF06906.11 gi|119719007|ref|YP_919502.1| - 0.039 14.1 0.8 1.7 8.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DNA_ligase_ZBD PF03119.16 gi|119719007|ref|YP_919502.1| - 0.047 13.7 1.6 0.048 13.7 0.0 1.8 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TackOD1 PF18551.1 gi|119719007|ref|YP_919502.1| - 0.074 12.7 1.8 4.2 7.0 0.0 2.0 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|119719007|ref|YP_919502.1| - 0.098 12.1 3.7 0.38 10.2 0.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.14 gi|119719007|ref|YP_919502.1| - 0.12 12.8 2.8 0.97 9.8 2.8 1.9 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-ACC PF17848.1 gi|119719007|ref|YP_919502.1| - 0.12 12.5 2.9 0.15 12.2 0.2 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain CpXC PF14353.6 gi|119719007|ref|YP_919502.1| - 0.15 12.1 2.6 2.3 8.3 2.5 2.0 1 1 0 1 1 1 0 CpXC protein zf-ANAPC11 PF12861.7 gi|119719007|ref|YP_919502.1| - 0.16 12.0 2.0 0.54 10.4 2.0 1.8 1 1 0 1 1 1 0 Anaphase-promoting complex subunit 11 RING-H2 finger Auto_anti-p27 PF06677.12 gi|119719007|ref|YP_919502.1| - 0.19 11.9 3.5 2.3 8.4 0.1 2.2 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_3 PF01381.22 gi|119719008|ref|YP_919503.1| - 1.9e-09 37.4 0.6 2.9e-09 36.8 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|119719008|ref|YP_919503.1| - 1.2e-07 31.1 0.6 6.1e-07 28.9 0.2 2.2 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|119719008|ref|YP_919503.1| - 3.3e-06 26.7 0.3 1.1e-05 25.0 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|119719008|ref|YP_919503.1| - 4.6e-06 26.5 0.0 1.1e-05 25.3 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|119719008|ref|YP_919503.1| - 6e-06 26.5 0.0 1.5e-05 25.2 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|119719008|ref|YP_919503.1| - 2.8e-05 23.9 1.4 0.00012 21.9 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|119719008|ref|YP_919503.1| - 4.8e-05 23.0 0.1 0.00064 19.4 0.0 2.3 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|119719008|ref|YP_919503.1| - 9.4e-05 22.4 0.2 0.0002 21.3 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|119719008|ref|YP_919503.1| - 0.0001 21.8 0.4 0.00024 20.5 0.3 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 LacI PF00356.21 gi|119719008|ref|YP_919503.1| - 0.00022 21.0 0.1 0.0015 18.3 0.0 2.3 2 1 0 2 2 1 1 Bacterial regulatory proteins, lacI family MarR_2 PF12802.7 gi|119719008|ref|YP_919503.1| - 0.00029 20.6 0.0 0.00054 19.8 0.0 1.5 1 1 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|119719008|ref|YP_919503.1| - 0.00035 20.2 0.1 0.00087 18.9 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|119719008|ref|YP_919503.1| - 0.00046 20.1 0.0 0.0008 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|119719008|ref|YP_919503.1| - 0.00057 19.8 0.1 0.0012 18.8 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|119719008|ref|YP_919503.1| - 0.0011 18.7 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease HNF-1_N PF04814.13 gi|119719008|ref|YP_919503.1| - 0.0012 19.5 0.1 0.0016 19.1 0.1 1.1 1 0 0 1 1 1 1 Hepatocyte nuclear factor 1 (HNF-1), N terminus TnsD PF15978.5 gi|119719008|ref|YP_919503.1| - 0.0015 17.6 0.0 0.0017 17.4 0.0 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_IclR PF09339.10 gi|119719008|ref|YP_919503.1| - 0.002 17.9 0.0 0.0043 16.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain UPF0175 PF03683.13 gi|119719008|ref|YP_919503.1| - 0.0022 17.7 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_7 PF02796.15 gi|119719008|ref|YP_919503.1| - 0.0036 17.4 0.1 0.0063 16.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|119719008|ref|YP_919503.1| - 0.0045 17.0 0.0 0.0091 16.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix YdaS_antitoxin PF15943.5 gi|119719008|ref|YP_919503.1| - 0.006 16.4 0.0 0.011 15.6 0.0 1.5 1 1 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_20 PF12840.7 gi|119719008|ref|YP_919503.1| - 0.01 15.9 0.0 0.026 14.6 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|119719008|ref|YP_919503.1| - 0.019 15.1 0.0 0.11 12.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Cro PF09048.10 gi|119719008|ref|YP_919503.1| - 0.029 14.4 0.0 0.046 13.8 0.0 1.4 1 0 0 1 1 1 0 Cro GerE PF00196.19 gi|119719008|ref|YP_919503.1| - 0.032 13.8 0.0 0.071 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF1670 PF07900.11 gi|119719008|ref|YP_919503.1| - 0.037 13.4 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_10 PF04967.12 gi|119719008|ref|YP_919503.1| - 0.042 13.7 0.0 0.094 12.5 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.12 gi|119719008|ref|YP_919503.1| - 0.052 13.5 0.2 0.11 12.4 0.2 1.5 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|119719008|ref|YP_919503.1| - 0.073 13.2 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|119719008|ref|YP_919503.1| - 0.081 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_ISL3 PF13542.6 gi|119719008|ref|YP_919503.1| - 0.088 12.2 0.0 0.2 11.1 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|119719008|ref|YP_919503.1| - 0.097 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_22 PF13309.6 gi|119719008|ref|YP_919503.1| - 0.11 12.7 0.1 0.36 11.0 0.1 1.9 1 1 0 1 1 1 0 HTH domain Sigma70_ECF PF07638.11 gi|119719008|ref|YP_919503.1| - 0.12 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor HTH_26 PF13443.6 gi|119719008|ref|YP_919503.1| - 0.13 12.7 0.1 0.42 11.1 0.0 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF739 PF05339.11 gi|119719008|ref|YP_919503.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF739) HTH_36 PF13730.6 gi|119719008|ref|YP_919503.1| - 0.14 12.1 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.10 gi|119719008|ref|YP_919503.1| - 0.16 12.0 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 KorB domain UbiD PF01977.16 gi|119719009|ref|YP_919504.1| - 4.4e-55 187.2 0.0 5.1e-55 187.0 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF2153 PF09921.9 gi|119719010|ref|YP_919505.1| - 3.6e-52 175.4 1.4 4.4e-52 175.1 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Glycos_trans_3N PF02885.17 gi|119719011|ref|YP_919506.1| - 3.2e-16 58.9 0.0 1.2e-15 57.1 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|119719011|ref|YP_919506.1| - 8.2e-14 51.8 0.5 1.4e-12 47.7 0.2 2.6 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain PYNP_C PF07831.13 gi|119719011|ref|YP_919506.1| - 3e-13 49.2 0.0 9.5e-13 47.6 0.0 1.9 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain CDC48_N PF02359.18 gi|119719011|ref|YP_919506.1| - 0.00094 19.3 0.0 0.0025 17.9 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain DUF2254 PF10011.9 gi|119719011|ref|YP_919506.1| - 0.0024 16.7 0.0 0.0039 16.1 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF2774 PF11242.8 gi|119719011|ref|YP_919506.1| - 0.0069 16.6 0.0 10 6.4 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF2774) MazE_antitoxin PF04014.18 gi|119719011|ref|YP_919506.1| - 0.008 16.1 0.3 1.2 9.1 0.0 3.7 4 0 0 4 4 3 1 Antidote-toxin recognition MazE, bacterial antitoxin HlyD_D23 PF16576.5 gi|119719011|ref|YP_919506.1| - 0.035 13.3 0.0 0.3 10.3 0.0 2.3 2 0 0 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion DUF1905 PF08922.11 gi|119719011|ref|YP_919506.1| - 0.068 13.2 0.1 0.23 11.6 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) HlyD_3 PF13437.6 gi|119719011|ref|YP_919506.1| - 0.07 13.8 1.4 29 5.4 0.0 3.5 3 1 1 4 4 4 0 HlyD family secretion protein RuvB_N PF05496.12 gi|119719011|ref|YP_919506.1| - 0.079 12.7 0.1 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Molydop_binding PF01568.21 gi|119719011|ref|YP_919506.1| - 0.083 12.9 0.4 0.55 10.3 0.2 2.1 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain PriA_3primeBD PF17764.1 gi|119719011|ref|YP_919506.1| - 0.17 11.8 0.6 5.7 6.9 0.1 3.2 2 2 1 3 3 3 0 3′ DNA-binding domain (3′BD) AFOR_C PF01314.18 gi|119719012|ref|YP_919507.1| - 2.9e-97 326.1 0.0 3.5e-97 325.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|119719012|ref|YP_919507.1| - 5.2e-71 238.6 0.0 7.3e-71 238.1 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|119719013|ref|YP_919508.1| - 3e-06 27.8 0.1 3.5e-06 27.6 0.1 1.2 1 0 0 1 1 1 1 ThiS family CxxCxxCC PF03692.15 gi|119719015|ref|YP_919510.1| - 1.4e-16 60.9 0.9 1.8e-16 60.6 0.9 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|119719015|ref|YP_919510.1| - 0.0055 16.5 2.4 0.031 14.1 2.4 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3109) CTP-dep_RFKase PF01982.16 gi|119719016|ref|YP_919511.1| - 4.4e-35 120.4 0.0 6.2e-35 119.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.7 gi|119719016|ref|YP_919511.1| - 0.034 14.0 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HARE-HTH PF05066.13 gi|119719016|ref|YP_919511.1| - 0.045 14.1 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain HTH_45 PF14947.6 gi|119719016|ref|YP_919511.1| - 0.14 12.2 0.0 0.47 10.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_34 PF13601.6 gi|119719016|ref|YP_919511.1| - 0.16 12.2 0.0 0.52 10.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain STN1_2 PF09170.10 gi|119719016|ref|YP_919511.1| - 0.24 11.6 0.0 0.37 11.0 0.0 1.2 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Peptidase_M54 PF07998.11 gi|119719018|ref|YP_919513.1| - 1.1e-27 97.2 0.0 1.4e-27 97.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.8 gi|119719018|ref|YP_919513.1| - 0.0047 15.6 0.1 0.0066 15.1 0.1 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.6 gi|119719018|ref|YP_919513.1| - 0.0049 17.4 0.0 0.0062 17.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|119719018|ref|YP_919513.1| - 0.0067 15.4 0.0 0.0096 14.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M10 PF00413.24 gi|119719018|ref|YP_919513.1| - 0.0086 15.9 0.0 0.0086 15.9 0.0 1.2 1 0 0 1 1 1 1 Matrixin DUF4953 PF16313.5 gi|119719018|ref|YP_919513.1| - 0.055 12.7 0.2 0.09 12.0 0.2 1.3 1 0 0 1 1 1 0 Met-zincin Reprolysin_5 PF13688.6 gi|119719018|ref|YP_919513.1| - 0.18 11.9 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 5-FTHF_cyc-lig PF01812.20 gi|119719019|ref|YP_919514.1| - 2.7e-25 89.3 0.0 3.6e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family RHH_1 PF01402.21 gi|119719020|ref|YP_919515.1| - 9.2e-09 34.9 0.0 1.7e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|119719020|ref|YP_919515.1| - 6.2e-07 29.6 0.1 6.8e-07 29.5 0.1 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family YuiB PF14068.6 gi|119719020|ref|YP_919515.1| - 0.052 14.1 0.0 0.065 13.8 0.0 1.1 1 0 0 1 1 1 0 Putative membrane protein TFIIA_gamma_N PF02268.16 gi|119719020|ref|YP_919515.1| - 0.069 13.2 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain tRNA_bind PF01588.20 gi|119719021|ref|YP_919516.1| - 7e-30 103.0 0.1 8.1e-30 102.8 0.1 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain HTH_27 PF13463.6 gi|119719022|ref|YP_919517.1| - 6.6e-07 29.7 0.0 9.4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|119719022|ref|YP_919517.1| - 4.9e-05 23.1 0.1 6.4e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|119719022|ref|YP_919517.1| - 0.00026 20.8 0.0 0.00044 20.1 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|119719022|ref|YP_919517.1| - 0.00026 20.9 0.1 0.00036 20.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|119719022|ref|YP_919517.1| - 0.0005 19.9 0.4 0.003 17.4 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119719022|ref|YP_919517.1| - 0.0011 19.0 0.0 0.015 15.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|119719022|ref|YP_919517.1| - 0.01 16.0 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|119719022|ref|YP_919517.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|119719022|ref|YP_919517.1| - 0.018 15.0 0.9 0.038 13.9 0.4 1.8 1 1 1 2 2 2 0 HTH domain DUF1495 PF07381.11 gi|119719022|ref|YP_919517.1| - 0.023 14.5 0.0 0.029 14.2 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.10 gi|119719022|ref|YP_919517.1| - 0.051 13.4 0.0 0.37 10.6 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|119719022|ref|YP_919517.1| - 0.068 13.1 0.0 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 MarR family Isochorismatase PF00857.20 gi|119719023|ref|YP_919518.1| - 8.3e-48 162.9 0.0 9.4e-48 162.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AAA_25 PF13481.6 gi|119719023|ref|YP_919518.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Phage_integrase PF00589.22 gi|119719024|ref|YP_919519.1| - 5.1e-49 166.4 0.5 7.4e-49 165.8 0.5 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|119719024|ref|YP_919519.1| - 3.7e-10 40.0 3.7 6.1e-10 39.3 0.2 2.9 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|119719024|ref|YP_919519.1| - 2.8e-08 34.1 0.4 2.6e-07 31.0 0.1 2.6 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 gi|119719024|ref|YP_919519.1| - 0.0054 15.7 0.2 0.014 14.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3435) Phage_int_SAM_5 PF13102.6 gi|119719024|ref|YP_919519.1| - 0.042 14.2 0.5 0.18 12.1 0.1 2.1 2 0 0 2 2 2 0 Phage integrase SAM-like domain HTH_23 PF13384.6 gi|119719024|ref|YP_919519.1| - 0.044 13.6 0.2 1.3 8.9 0.0 3.2 3 0 0 3 3 3 0 Homeodomain-like domain DNase-RNase PF02577.14 gi|119719025|ref|YP_919520.1| - 3.6e-33 114.0 0.1 4.4e-33 113.7 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease ATP-grasp_5 PF13549.6 gi|119719027|ref|YP_919522.1| - 3.1e-67 226.3 0.0 3.5e-67 226.1 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain DegT_DnrJ_EryC1 PF01041.17 gi|119719028|ref|YP_919523.1| - 1.2e-115 386.7 0.0 1.9e-115 386.0 0.0 1.3 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|119719028|ref|YP_919523.1| - 1.1e-05 24.9 0.2 2.3e-05 23.8 0.2 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|119719028|ref|YP_919523.1| - 1.4e-05 24.3 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|119719028|ref|YP_919523.1| - 0.00014 20.6 0.0 0.00019 20.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|119719028|ref|YP_919523.1| - 0.0003 20.1 0.0 0.00057 19.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II PAS_12 PF18095.1 gi|119719028|ref|YP_919523.1| - 0.19 11.3 0.0 2.1 7.9 0.0 2.1 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain HD PF01966.22 gi|119719029|ref|YP_919524.1| - 5e-05 23.5 0.3 0.00011 22.4 0.1 1.8 2 0 0 2 2 2 1 HD domain Enolase_C PF00113.22 gi|119719030|ref|YP_919525.1| - 1.7e-124 414.9 0.1 2.2e-124 414.5 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|119719030|ref|YP_919525.1| - 1.5e-55 186.9 0.0 2.7e-55 186.1 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|119719030|ref|YP_919525.1| - 3.4e-13 49.7 0.0 5.4e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|119719030|ref|YP_919525.1| - 0.03 13.5 0.1 0.07 12.3 0.0 1.6 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus NTP_transferase PF00483.23 gi|119719031|ref|YP_919526.1| - 8.7e-26 91.0 0.0 1.1e-25 90.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119719031|ref|YP_919526.1| - 7.2e-11 42.7 0.0 9.6e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain FAD_binding_3 PF01494.19 gi|119719032|ref|YP_919527.1| - 5.2e-13 49.0 0.0 3.4e-09 36.4 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|119719032|ref|YP_919527.1| - 1.1e-05 24.9 0.0 1.5e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|119719032|ref|YP_919527.1| - 0.012 14.7 0.1 0.17 10.9 0.1 2.3 2 1 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|119719032|ref|YP_919527.1| - 0.014 14.6 0.6 2.8 7.1 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|119719032|ref|YP_919527.1| - 0.047 13.7 0.6 9.2 6.2 0.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|119719032|ref|YP_919527.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PadR PF03551.14 gi|119719033|ref|YP_919528.1| - 1.6e-15 56.8 0.1 2.2e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|119719033|ref|YP_919528.1| - 0.00029 20.7 0.1 0.00093 19.0 0.1 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB CtsR_C PF17727.1 gi|119719033|ref|YP_919528.1| - 0.0017 18.4 0.0 0.0044 17.1 0.0 1.7 2 0 0 2 2 2 1 CtsR C-terminal dimerization domain DUF2513 PF10711.9 gi|119719033|ref|YP_919528.1| - 0.0031 17.8 0.0 0.0045 17.3 0.0 1.3 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_45 PF14947.6 gi|119719033|ref|YP_919528.1| - 0.0051 16.8 0.0 0.012 15.6 0.0 1.6 1 1 1 2 2 2 1 Winged helix-turn-helix DUF505 PF04458.12 gi|119719033|ref|YP_919528.1| - 0.011 14.1 0.1 0.011 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|119719033|ref|YP_919528.1| - 0.021 14.9 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF1495 PF07381.11 gi|119719033|ref|YP_919528.1| - 0.022 14.6 0.0 0.032 14.1 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF3116 PF11313.8 gi|119719033|ref|YP_919528.1| - 0.027 14.3 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HTH_5 PF01022.20 gi|119719033|ref|YP_919528.1| - 0.027 14.4 0.0 0.18 11.7 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|119719033|ref|YP_919528.1| - 0.076 13.5 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|119719033|ref|YP_919528.1| - 0.078 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Methyltransf_11 PF08241.12 gi|119719034|ref|YP_919529.1| - 8.1e-08 32.8 0.0 1.2e-07 32.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119719034|ref|YP_919529.1| - 9.7e-07 28.3 0.0 6.3e-06 25.7 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|119719034|ref|YP_919529.1| - 1.2e-06 29.1 0.0 2.8e-06 28.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119719034|ref|YP_919529.1| - 0.00014 21.8 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|119719034|ref|YP_919529.1| - 0.00044 19.3 0.0 0.00053 19.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|119719034|ref|YP_919529.1| - 0.0094 15.5 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|119719034|ref|YP_919529.1| - 0.02 14.7 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|119719034|ref|YP_919529.1| - 0.026 14.1 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|119719034|ref|YP_919529.1| - 0.036 14.8 0.0 0.056 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|119719034|ref|YP_919529.1| - 0.086 12.2 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB polyprenyl_synt PF00348.17 gi|119719035|ref|YP_919530.1| - 4.8e-35 120.8 0.0 6.7e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase TatD_DNase PF01026.21 gi|119719036|ref|YP_919531.1| - 1.4e-59 201.6 0.0 1.6e-59 201.4 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|119719036|ref|YP_919531.1| - 0.00012 22.0 0.0 0.29 10.9 0.1 2.7 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.20 gi|119719036|ref|YP_919531.1| - 0.0052 16.2 0.0 0.0072 15.7 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family CPSase_L_D2 PF02786.17 gi|119719037|ref|YP_919532.1| - 4.4e-70 235.5 0.0 6.3e-70 235.0 0.0 1.1 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|119719037|ref|YP_919532.1| - 1.3e-43 148.0 0.0 4.8e-43 146.2 0.0 1.9 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|119719037|ref|YP_919532.1| - 5.7e-37 126.1 0.0 1.1e-36 125.3 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|119719037|ref|YP_919532.1| - 7.5e-13 48.5 0.0 1.2e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|119719037|ref|YP_919532.1| - 7.3e-07 28.9 0.0 1.2e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|119719037|ref|YP_919532.1| - 2.5e-06 27.2 0.0 4.9e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|119719037|ref|YP_919532.1| - 1.7e-05 25.0 0.0 3.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain LAL_C2 PF18603.1 gi|119719037|ref|YP_919532.1| - 0.012 15.8 0.0 3.2 8.0 0.0 3.4 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 ATPgrasp_Ter PF15632.6 gi|119719037|ref|YP_919532.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.6 gi|119719037|ref|YP_919532.1| - 0.071 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|119719037|ref|YP_919532.1| - 0.079 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|119719037|ref|YP_919532.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Spermine_synth PF01564.17 gi|119719038|ref|YP_919533.1| - 2.8e-50 170.3 0.0 6e-50 169.3 0.0 1.5 1 1 1 2 2 2 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|119719038|ref|YP_919533.1| - 2.6e-08 33.6 0.0 5.3e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|119719038|ref|YP_919533.1| - 1.3e-05 25.8 0.0 2.3e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|119719038|ref|YP_919533.1| - 2.8e-05 23.5 0.0 4.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_30 PF05430.11 gi|119719038|ref|YP_919533.1| - 4.1e-05 23.5 0.0 9.5e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.12 gi|119719038|ref|YP_919533.1| - 0.00023 21.8 0.0 0.00054 20.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain TRM PF02005.16 gi|119719038|ref|YP_919533.1| - 0.1 11.8 0.0 0.21 10.7 0.0 1.5 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase ZnuA PF01297.17 gi|119719039|ref|YP_919534.1| - 5.2e-14 52.3 0.0 7.4e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|119719040|ref|YP_919535.1| - 8.7e-26 91.1 0.0 1.2e-25 90.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119719040|ref|YP_919535.1| - 8.9e-13 48.7 0.5 2e-06 27.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119719040|ref|YP_919535.1| - 6.8e-05 23.4 0.3 0.0001 22.8 0.3 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119719040|ref|YP_919535.1| - 8.6e-05 22.1 0.1 0.00079 18.9 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119719040|ref|YP_919535.1| - 0.0024 17.6 0.3 0.0049 16.6 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 gi|119719040|ref|YP_919535.1| - 0.0052 15.9 0.0 0.0088 15.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|119719040|ref|YP_919535.1| - 0.0071 16.7 0.1 0.011 16.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119719040|ref|YP_919535.1| - 0.0086 16.5 0.2 0.03 14.7 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119719040|ref|YP_919535.1| - 0.034 14.4 0.6 0.17 12.2 0.6 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119719040|ref|YP_919535.1| - 0.041 13.6 0.0 0.092 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|119719040|ref|YP_919535.1| - 0.044 14.0 0.0 0.063 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|119719040|ref|YP_919535.1| - 0.069 13.1 0.1 0.59 10.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|119719040|ref|YP_919535.1| - 0.09 12.7 0.5 0.21 11.5 0.3 1.7 2 0 0 2 2 1 0 NTPase NB-ARC PF00931.22 gi|119719040|ref|YP_919535.1| - 0.12 11.5 0.1 0.24 10.6 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|119719040|ref|YP_919535.1| - 0.14 12.1 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|119719040|ref|YP_919535.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC-3 PF00950.17 gi|119719041|ref|YP_919536.1| - 1.4e-27 96.8 26.1 1.6e-27 96.6 26.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|119719041|ref|YP_919536.1| - 3e-06 26.5 22.4 4.1e-06 26.0 22.4 1.2 1 0 0 1 1 1 1 FecCD transport family NikR_C PF08753.11 gi|119719042|ref|YP_919537.1| - 7.3e-06 26.1 0.0 1.1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|119719042|ref|YP_919537.1| - 0.04 13.9 0.3 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Ribosomal_L2 PF00181.23 gi|119719042|ref|YP_919537.1| - 0.13 12.2 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal Proteins L2, RNA binding domain TYW3 PF02676.14 gi|119719043|ref|YP_919538.1| - 1e-37 129.6 0.1 1.4e-37 129.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 PNP_UDP_1 PF01048.20 gi|119719044|ref|YP_919539.1| - 4.8e-37 127.4 0.9 5.5e-37 127.3 0.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Metallophos_2 PF12850.7 gi|119719045|ref|YP_919540.1| - 1e-09 38.8 0.0 4.5e-09 36.7 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Peptidase_M1 PF01433.20 gi|119719046|ref|YP_919541.1| - 1e-05 25.3 0.7 2.6e-05 23.9 0.7 1.7 1 1 0 1 1 1 1 Peptidase family M1 domain BSP PF04450.12 gi|119719046|ref|YP_919541.1| - 0.00088 19.1 0.2 0.0014 18.5 0.2 1.3 1 0 0 1 1 1 1 Peptidase of plants and bacteria DUF1570 PF07607.11 gi|119719046|ref|YP_919541.1| - 0.0083 16.4 0.1 0.02 15.2 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1570) ABC2_membrane_3 PF12698.7 gi|119719046|ref|YP_919541.1| - 0.0092 15.1 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein Peptidase_M61 PF05299.12 gi|119719046|ref|YP_919541.1| - 0.0096 16.3 1.0 0.034 14.5 1.0 1.9 1 1 0 1 1 1 1 M61 glycyl aminopeptidase Mu-transpos_C PF09299.11 gi|119719046|ref|YP_919541.1| - 0.1 12.6 0.1 0.32 11.0 0.1 1.8 1 0 0 1 1 1 0 Mu transposase, C-terminal DUF45 PF01863.17 gi|119719046|ref|YP_919541.1| - 0.24 11.4 0.0 0.42 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF45 Fer4_13 PF13370.6 gi|119719047|ref|YP_919542.1| - 9.1e-22 77.4 0.8 1.2e-21 77.0 0.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|119719047|ref|YP_919542.1| - 2.6e-19 69.7 1.1 3e-19 69.5 1.1 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|119719047|ref|YP_919542.1| - 0.00012 22.0 0.7 0.00012 22.0 0.7 2.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.27 gi|119719047|ref|YP_919542.1| - 0.0004 20.1 7.4 0.00061 19.5 0.7 2.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119719047|ref|YP_919542.1| - 0.0004 20.4 2.9 0.0052 16.9 3.5 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|119719047|ref|YP_919542.1| - 0.0021 18.1 0.9 0.0036 17.4 0.1 1.7 2 0 0 2 2 2 1 Divergent 4Fe-4S mono-cluster Fer4_7 PF12838.7 gi|119719047|ref|YP_919542.1| - 0.014 16.0 3.3 0.048 14.2 0.4 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain ComFB PF10719.9 gi|119719047|ref|YP_919542.1| - 0.15 12.2 0.3 0.56 10.3 0.3 1.8 2 0 0 2 2 2 0 Late competence development protein ComFB Fer4_2 PF12797.7 gi|119719047|ref|YP_919542.1| - 2.4 8.4 5.7 0.72 10.1 1.0 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119719047|ref|YP_919542.1| - 7.1 7.8 7.0 5.2 8.2 1.0 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain tRNA-synt_1 PF00133.22 gi|119719048|ref|YP_919543.1| - 3.5e-183 610.1 0.0 4.5e-183 609.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|119719048|ref|YP_919543.1| - 2.2e-32 112.1 0.0 4.2e-32 111.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|119719048|ref|YP_919543.1| - 3.6e-18 65.5 0.0 6.4e-07 28.5 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|119719048|ref|YP_919543.1| - 0.00045 19.3 0.0 0.0038 16.2 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) zf-TFIIB PF13453.6 gi|119719048|ref|YP_919543.1| - 0.041 13.2 0.8 9.9 5.6 0.0 3.1 3 0 0 3 3 3 0 Transcription factor zinc-finger tRNA-synt_1_2 PF13603.6 gi|119719048|ref|YP_919543.1| - 0.055 13.0 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|119719048|ref|YP_919543.1| - 0.072 12.4 0.0 0.18 11.1 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Zn_ribbon_recom PF13408.6 gi|119719048|ref|YP_919543.1| - 0.073 13.6 2.1 65 4.1 0.1 3.8 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain zf-IS66 PF13005.7 gi|119719048|ref|YP_919543.1| - 0.79 10.2 3.3 5.1 7.6 0.2 3.6 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.19 gi|119719048|ref|YP_919543.1| - 1.4 8.8 4.9 2 8.3 0.3 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|119719048|ref|YP_919543.1| - 5.2 7.3 7.5 7.5 6.8 3.3 3.1 2 1 0 2 2 2 0 Zinc ribbon domain DUF72 PF01904.18 gi|119719049|ref|YP_919544.1| - 1.2e-48 166.1 0.3 1.6e-48 165.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 HeH PF12949.7 gi|119719049|ref|YP_919544.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 HeH/LEM domain NPCBM_assoc PF10633.9 gi|119719050|ref|YP_919545.1| - 6.1e-24 84.1 6.6 1.8e-08 34.5 0.1 4.6 4 0 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|119719050|ref|YP_919545.1| - 1.4e-10 41.2 10.4 3.9e-10 39.9 0.2 4.8 4 1 0 5 5 5 1 Carboxypeptidase regulatory-like domain FixG_C PF11614.8 gi|119719050|ref|YP_919545.1| - 3.2e-09 37.0 0.1 0.21 11.8 0.0 5.4 2 1 5 7 7 7 3 IG-like fold at C-terminal of FixG, putative oxidoreductase fn3_5 PF06280.12 gi|119719050|ref|YP_919545.1| - 0.0006 20.5 0.4 2 9.1 0.0 4.1 4 0 0 4 4 4 1 Fn3-like domain MG2 PF01835.19 gi|119719050|ref|YP_919545.1| - 0.0015 18.9 0.0 6.5 7.3 0.0 4.0 5 0 0 5 5 4 1 MG2 domain PEGA PF08308.11 gi|119719050|ref|YP_919545.1| - 0.0039 17.0 1.6 0.07 13.0 0.1 3.5 4 0 0 4 4 4 1 PEGA domain DUF11 PF01345.18 gi|119719050|ref|YP_919545.1| - 0.026 14.8 16.7 0.64 10.4 2.4 4.4 3 1 1 4 4 4 0 Domain of unknown function DUF11 ASH PF15780.5 gi|119719050|ref|YP_919545.1| - 0.047 13.9 3.3 0.92 9.8 0.1 3.8 4 0 0 4 4 4 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Alpha_adaptinC2 PF02883.20 gi|119719050|ref|YP_919545.1| - 0.05 13.9 1.1 12 6.3 0.1 3.6 3 1 1 4 4 4 0 Adaptin C-terminal domain fn3_3 PF14686.6 gi|119719050|ref|YP_919545.1| - 0.086 12.6 1.1 1.4 8.7 0.2 3.1 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II Coatamer_beta_C PF07718.12 gi|119719050|ref|YP_919545.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Coatomer beta C-terminal region fn3_6 PF17766.1 gi|119719050|ref|YP_919545.1| - 0.13 12.4 5.2 0.37 11.0 0.0 3.9 2 2 2 4 4 4 0 Fibronectin type-III domain CzcE PF16986.5 gi|119719050|ref|YP_919545.1| - 0.14 12.5 0.2 1.6 9.1 0.0 2.9 3 0 0 3 3 3 0 Heavy-metal resistance protein CzcE Transglut_N PF00868.20 gi|119719050|ref|YP_919545.1| - 0.17 12.3 0.0 15 5.9 0.0 2.9 2 0 0 2 2 2 0 Transglutaminase family CARDB PF07705.11 gi|119719050|ref|YP_919545.1| - 0.29 11.4 1.9 20 5.5 0.1 3.6 3 1 0 3 3 3 0 CARDB DsbD PF02683.15 gi|119719051|ref|YP_919546.1| - 4e-15 56.3 19.8 4e-15 56.3 19.8 3.0 2 1 1 3 3 3 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|119719051|ref|YP_919546.1| - 2.6e-12 47.1 22.6 2.6e-12 47.1 22.6 2.5 3 0 0 3 3 3 1 Cytochrome C biogenesis protein transmembrane region DUF2523 PF10734.9 gi|119719051|ref|YP_919546.1| - 0.33 11.5 0.2 0.33 11.5 0.2 5.7 5 1 1 7 7 7 0 Protein of unknown function (DUF2523) TrmB PF01978.19 gi|119719052|ref|YP_919547.1| - 0.0017 18.2 0.1 0.0028 17.5 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Glyco_hydro_57 PF03065.15 gi|119719053|ref|YP_919548.1| - 4.4e-66 223.3 0.1 7.4e-66 222.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|119719053|ref|YP_919548.1| - 0.0064 16.4 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide deacetylase Pyrophosphatase PF00719.19 gi|119719054|ref|YP_919549.1| - 9.3e-56 188.1 0.1 1.1e-55 187.9 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase GTP_EFTU PF00009.27 gi|119719055|ref|YP_919550.1| - 4e-20 72.2 0.0 7.4e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|119719055|ref|YP_919550.1| - 2.6e-08 34.1 0.3 4.1e-07 30.3 0.1 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|119719055|ref|YP_919550.1| - 0.0002 21.6 0.0 0.00045 20.5 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|119719055|ref|YP_919550.1| - 0.015 15.4 0.0 0.034 14.2 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|119719055|ref|YP_919550.1| - 0.19 11.5 0.3 1.5 8.5 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF72 PF01904.18 gi|119719056|ref|YP_919551.1| - 1e-56 192.5 0.2 2.1e-56 191.5 0.1 1.4 2 0 0 2 2 2 1 Protein of unknown function DUF72 SNAP PF14938.6 gi|119719056|ref|YP_919551.1| - 0.069 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP DUF429 PF04250.13 gi|119719057|ref|YP_919552.1| - 9.5e-11 41.9 0.0 2.6e-10 40.5 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF429) dUTPase PF00692.19 gi|119719058|ref|YP_919553.1| - 1.8e-15 56.7 0.0 2.9e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|119719058|ref|YP_919553.1| - 1e-07 31.1 0.0 2.5e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HhH-GPD PF00730.25 gi|119719059|ref|YP_919554.1| - 1.5e-15 57.5 0.0 2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|119719059|ref|YP_919554.1| - 9.1e-06 25.9 6.5 1.7e-05 25.0 6.5 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III SurE PF01975.17 gi|119719060|ref|YP_919555.1| - 2.8e-35 121.9 0.0 3.5e-35 121.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Pyr_redox_2 PF07992.14 gi|119719061|ref|YP_919556.1| - 6.1e-64 216.1 0.9 7.6e-64 215.8 0.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119719061|ref|YP_919556.1| - 5.1e-24 84.6 2.0 5.1e-18 65.4 0.5 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|119719061|ref|YP_919556.1| - 2.2e-16 60.1 0.0 9.8e-16 58.0 0.0 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|119719061|ref|YP_919556.1| - 8.6e-15 54.8 0.1 2.8e-11 43.2 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119719061|ref|YP_919556.1| - 1.6e-10 41.1 8.5 0.043 13.4 0.7 4.2 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|119719061|ref|YP_919556.1| - 3.1e-10 39.3 2.1 0.00043 19.1 0.1 4.1 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|119719061|ref|YP_919556.1| - 1.4e-09 38.0 1.6 0.00038 20.6 0.0 3.0 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|119719061|ref|YP_919556.1| - 2.4e-08 33.5 0.2 9e-07 28.4 0.0 2.3 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|119719061|ref|YP_919556.1| - 1.8e-07 30.7 0.0 8.3e-05 21.9 0.0 2.6 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|119719061|ref|YP_919556.1| - 1.4e-06 28.4 2.3 0.018 15.0 0.0 3.7 4 0 0 4 4 4 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|119719061|ref|YP_919556.1| - 5.4e-06 25.7 0.7 0.0014 17.8 0.0 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|119719061|ref|YP_919556.1| - 8.1e-06 25.2 6.1 0.00091 18.4 0.0 3.6 4 0 0 4 4 4 1 FAD binding domain GIDA PF01134.22 gi|119719061|ref|YP_919556.1| - 8.7e-06 25.1 0.5 0.049 12.7 0.1 2.5 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|119719061|ref|YP_919556.1| - 3.2e-05 23.3 1.1 0.09 12.0 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|119719061|ref|YP_919556.1| - 8.1e-05 22.0 1.1 0.21 10.9 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|119719061|ref|YP_919556.1| - 0.00092 18.7 3.6 0.1 11.9 0.1 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|119719061|ref|YP_919556.1| - 0.0016 18.8 0.5 0.15 12.5 0.2 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|119719061|ref|YP_919556.1| - 0.0055 16.6 0.5 0.017 15.0 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|119719061|ref|YP_919556.1| - 0.01 14.7 0.9 0.13 11.1 0.0 2.5 3 0 0 3 3 3 0 Tryptophan halogenase Mqo PF06039.15 gi|119719061|ref|YP_919556.1| - 0.024 13.2 0.0 0.035 12.6 0.0 1.2 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) ThiF PF00899.21 gi|119719061|ref|YP_919556.1| - 0.03 13.7 0.1 0.078 12.3 0.1 1.6 2 0 0 2 2 2 0 ThiF family TrkA_N PF02254.18 gi|119719061|ref|YP_919556.1| - 0.032 14.5 0.4 1.1 9.5 0.3 2.5 2 1 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|119719061|ref|YP_919556.1| - 0.048 13.2 0.1 0.087 12.4 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain tRNA_edit PF04073.15 gi|119719061|ref|YP_919556.1| - 0.073 13.2 0.0 0.51 10.4 0.0 2.3 2 0 0 2 2 2 0 Aminoacyl-tRNA editing domain GFO_IDH_MocA PF01408.22 gi|119719061|ref|YP_919556.1| - 0.095 13.5 0.3 0.84 10.5 0.1 2.5 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Phage_holin_3_5 PF16085.5 gi|119719062|ref|YP_919557.1| - 0.017 15.2 1.3 0.025 14.7 0.1 1.8 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III ABC_tran PF00005.27 gi|119719063|ref|YP_919558.1| - 1.3e-29 103.5 0.0 1.8e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119719063|ref|YP_919558.1| - 1.5e-21 76.7 1.3 2.3e-21 76.0 1.3 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|119719063|ref|YP_919558.1| - 1.2e-05 25.3 0.0 0.034 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|119719063|ref|YP_919558.1| - 0.0002 20.2 0.1 0.002 16.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119719063|ref|YP_919558.1| - 0.00029 21.2 0.1 0.0007 20.0 0.1 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|119719063|ref|YP_919558.1| - 0.00046 20.5 1.4 0.0074 16.6 1.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119719063|ref|YP_919558.1| - 0.0041 16.6 0.0 0.31 10.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119719063|ref|YP_919558.1| - 0.0069 16.1 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|119719063|ref|YP_919558.1| - 0.081 12.1 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain G-alpha PF00503.20 gi|119719063|ref|YP_919558.1| - 0.1 11.8 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit TsaE PF02367.17 gi|119719063|ref|YP_919558.1| - 0.12 12.4 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|119719063|ref|YP_919558.1| - 0.12 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|119719063|ref|YP_919558.1| - 0.15 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|119719063|ref|YP_919558.1| - 0.16 11.7 0.4 0.74 9.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|119719063|ref|YP_919558.1| - 0.2 11.6 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|119719063|ref|YP_919558.1| - 0.35 11.3 0.9 2.1 8.8 0.2 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|119719064|ref|YP_919559.1| - 6.8e-29 101.1 0.0 9.3e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119719064|ref|YP_919559.1| - 1.4e-18 67.1 0.7 2.8e-18 66.2 0.7 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|119719064|ref|YP_919559.1| - 8.1e-10 39.0 0.2 2.8e-06 27.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119719064|ref|YP_919559.1| - 1e-06 28.3 0.0 2.2e-05 24.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119719064|ref|YP_919559.1| - 8.7e-06 26.0 0.0 0.0031 17.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|119719064|ref|YP_919559.1| - 6.2e-05 22.5 0.0 0.036 13.5 0.0 2.6 3 0 0 3 3 3 1 Bacterial TniB protein AAA_16 PF13191.6 gi|119719064|ref|YP_919559.1| - 6.8e-05 23.3 0.0 9.9e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|119719064|ref|YP_919559.1| - 0.00037 20.5 0.0 0.0021 18.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|119719064|ref|YP_919559.1| - 0.00041 20.3 0.0 0.00088 19.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase IstB_IS21 PF01695.17 gi|119719064|ref|YP_919559.1| - 0.0017 18.1 0.1 0.043 13.5 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.6 gi|119719064|ref|YP_919559.1| - 0.002 18.7 0.0 0.0029 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119719064|ref|YP_919559.1| - 0.0022 17.7 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|119719064|ref|YP_919559.1| - 0.0043 17.5 0.0 0.051 14.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|119719064|ref|YP_919559.1| - 0.0052 16.5 0.6 0.0065 16.2 0.0 1.4 2 0 0 2 2 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|119719064|ref|YP_919559.1| - 0.0068 16.8 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.12 gi|119719064|ref|YP_919559.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.25 gi|119719064|ref|YP_919559.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2612 PF11041.8 gi|119719064|ref|YP_919559.1| - 0.016 15.1 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2612) Sigma54_activat PF00158.26 gi|119719064|ref|YP_919559.1| - 0.018 14.8 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|119719064|ref|YP_919559.1| - 0.021 14.0 0.0 0.062 12.5 0.0 1.8 1 1 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|119719064|ref|YP_919559.1| - 0.028 13.8 0.0 0.056 12.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|119719064|ref|YP_919559.1| - 0.028 14.5 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|119719064|ref|YP_919559.1| - 0.029 14.5 0.1 0.062 13.4 0.0 1.5 2 0 0 2 2 1 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|119719064|ref|YP_919559.1| - 0.075 12.6 0.0 0.17 11.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|119719064|ref|YP_919559.1| - 0.082 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FtsK_SpoIIIE PF01580.18 gi|119719064|ref|YP_919559.1| - 0.093 12.1 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_7 PF12775.7 gi|119719064|ref|YP_919559.1| - 0.098 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|119719064|ref|YP_919559.1| - 0.15 11.2 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|119719064|ref|YP_919559.1| - 0.17 12.5 0.0 0.39 11.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain ABC_ATPase PF09818.9 gi|119719064|ref|YP_919559.1| - 0.19 10.5 0.8 2.6 6.7 0.2 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DUF2813 PF11398.8 gi|119719064|ref|YP_919559.1| - 0.2 10.9 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) BPD_transp_1 PF00528.22 gi|119719065|ref|YP_919560.1| - 2.6e-21 76.2 15.1 2.6e-21 76.2 15.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|119719065|ref|YP_919560.1| - 0.00057 19.8 0.1 0.00057 19.8 0.1 3.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C 2-oxogl_dehyd_N PF16078.5 gi|119719065|ref|YP_919560.1| - 0.094 12.3 0.1 0.26 10.9 0.1 1.7 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus BPD_transp_1 PF00528.22 gi|119719066|ref|YP_919561.1| - 8.9e-30 103.8 12.4 8.9e-30 103.8 12.4 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|119719067|ref|YP_919562.1| - 7.5e-22 77.8 1.7 3.7e-19 68.9 0.3 2.3 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle FlaC_arch PF05377.11 gi|119719067|ref|YP_919562.1| - 0.01 16.2 0.0 0.03 14.7 0.0 1.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) HTH_AsnC-type PF13404.6 gi|119719068|ref|YP_919563.1| - 3e-13 49.4 0.9 5.2e-13 48.6 0.9 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|119719068|ref|YP_919563.1| - 3e-12 46.3 0.0 5.5e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|119719068|ref|YP_919563.1| - 3.4e-12 45.7 0.8 5.9e-12 45.0 0.8 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|119719068|ref|YP_919563.1| - 1.5e-06 28.1 0.4 2.7e-06 27.2 0.4 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|119719068|ref|YP_919563.1| - 8.5e-06 25.6 0.1 2.3e-05 24.2 0.1 1.7 2 0 0 2 2 2 1 MarR family HxlR PF01638.17 gi|119719068|ref|YP_919563.1| - 1.3e-05 25.0 0.0 2.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|119719068|ref|YP_919563.1| - 1.4e-05 25.1 0.2 2.1e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|119719068|ref|YP_919563.1| - 6.9e-05 22.6 0.1 0.00013 21.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|119719068|ref|YP_919563.1| - 0.00022 21.6 0.2 0.00049 20.5 0.1 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|119719068|ref|YP_919563.1| - 0.00059 19.8 0.0 0.00097 19.1 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|119719068|ref|YP_919563.1| - 0.0047 16.9 0.1 0.0075 16.2 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|119719068|ref|YP_919563.1| - 0.0047 17.1 0.0 0.0084 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_CodY PF08222.11 gi|119719068|ref|YP_919563.1| - 0.0049 16.4 0.7 0.011 15.3 0.1 1.9 2 0 0 2 2 2 1 CodY helix-turn-helix domain FeoC PF09012.10 gi|119719068|ref|YP_919563.1| - 0.0064 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.16 gi|119719068|ref|YP_919563.1| - 0.0082 15.9 0.1 0.015 15.1 0.1 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_10 PF04967.12 gi|119719068|ref|YP_919563.1| - 0.0084 15.9 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.19 gi|119719068|ref|YP_919563.1| - 0.013 15.4 0.2 0.024 14.5 0.2 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|119719068|ref|YP_919563.1| - 0.017 14.8 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_5 PF01022.20 gi|119719068|ref|YP_919563.1| - 0.019 14.8 0.1 0.033 14.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|119719068|ref|YP_919563.1| - 0.024 15.0 0.1 0.067 13.6 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|119719068|ref|YP_919563.1| - 0.025 14.3 0.2 0.043 13.6 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_WhiA PF02650.14 gi|119719068|ref|YP_919563.1| - 0.026 14.9 0.1 0.045 14.1 0.1 1.4 1 0 0 1 1 1 0 WhiA C-terminal HTH domain HTH_12 PF08461.10 gi|119719068|ref|YP_919563.1| - 0.031 14.2 2.2 0.81 9.7 0.2 2.5 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain FaeA PF04703.12 gi|119719068|ref|YP_919563.1| - 0.049 14.0 0.0 1 9.8 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein Tail_tube PF10618.9 gi|119719068|ref|YP_919563.1| - 0.082 12.8 0.0 1.1 9.2 0.0 2.0 2 0 0 2 2 2 0 Phage tail tube protein DUF5122 PF17164.4 gi|119719069|ref|YP_919564.1| - 0.0061 16.8 11.9 0.65 10.3 0.0 4.0 4 0 0 4 4 4 3 Domain of unknown function (DUF5122) beta-propeller HTH_1 PF00126.27 gi|119719070|ref|YP_919565.1| - 3.2e-05 23.8 2.2 3.4e-05 23.7 0.4 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|119719070|ref|YP_919565.1| - 0.011 15.6 0.0 0.042 13.7 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_28 PF13518.6 gi|119719070|ref|YP_919565.1| - 0.013 15.6 0.1 0.23 11.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|119719070|ref|YP_919565.1| - 0.025 14.6 0.7 0.24 11.5 0.7 2.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|119719070|ref|YP_919565.1| - 0.074 13.0 0.4 0.75 9.8 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Hjc PF01870.18 gi|119719070|ref|YP_919565.1| - 0.075 13.0 0.0 0.2 11.7 0.0 1.8 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) HTH_Tnp_ISL3 PF13542.6 gi|119719070|ref|YP_919565.1| - 0.096 12.1 1.0 0.32 10.4 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|119719070|ref|YP_919565.1| - 0.12 12.2 0.3 0.64 9.9 0.0 2.4 3 0 0 3 3 3 0 Homeodomain-like domain PAPS_reduct PF01507.19 gi|119719071|ref|YP_919566.1| - 6.5e-07 29.6 0.0 1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|119719071|ref|YP_919566.1| - 0.002 17.9 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Lactamase_B_3 PF13483.6 gi|119719072|ref|YP_919567.1| - 3.8e-32 111.4 0.3 6.6e-32 110.7 0.3 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|119719072|ref|YP_919567.1| - 1.8e-19 70.1 0.1 2.4e-19 69.7 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119719072|ref|YP_919567.1| - 0.00051 20.1 1.3 0.0082 16.2 1.3 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Biotin_lipoyl PF00364.22 gi|119719073|ref|YP_919568.1| - 3.9e-17 61.9 2.7 3.9e-17 61.9 2.7 1.6 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|119719073|ref|YP_919568.1| - 1.4e-16 60.0 0.3 1.9e-08 34.0 0.0 2.3 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|119719073|ref|YP_919568.1| - 5.2e-11 43.2 1.3 0.00023 21.8 0.2 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|119719073|ref|YP_919568.1| - 4.7e-09 35.8 2.5 0.00036 19.8 0.2 2.1 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Peptidase_M23 PF01551.22 gi|119719073|ref|YP_919568.1| - 5.1e-07 29.8 1.3 0.0012 19.1 0.2 2.6 1 1 1 2 2 2 2 Peptidase family M23 RnfC_N PF13375.6 gi|119719073|ref|YP_919568.1| - 1.2e-06 28.4 2.8 6.1e-06 26.1 0.8 2.1 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.16 gi|119719073|ref|YP_919568.1| - 6.6e-05 22.9 0.5 0.16 12.1 0.1 2.7 1 1 2 3 3 3 2 Quinolinate phosphoribosyl transferase, N-terminal domain PTS_EIIA_1 PF00358.20 gi|119719073|ref|YP_919568.1| - 0.00012 21.8 0.7 0.0072 16.1 0.7 3.0 1 1 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_H PF01597.19 gi|119719073|ref|YP_919568.1| - 0.0017 18.3 1.2 0.0027 17.6 1.0 1.6 1 1 0 1 1 1 1 Glycine cleavage H-protein DUF2118 PF09891.9 gi|119719073|ref|YP_919568.1| - 0.002 18.1 1.6 0.016 15.2 1.4 2.1 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) SatRNA_48 PF17485.2 gi|119719073|ref|YP_919568.1| - 0.014 14.5 0.1 0.014 14.5 0.1 1.1 1 0 0 1 1 1 0 Satellite RNA 48 kDa protein PYNP_C PF07831.13 gi|119719073|ref|YP_919568.1| - 0.026 14.2 0.3 3.6 7.3 0.1 2.3 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain PASTA PF03793.19 gi|119719073|ref|YP_919568.1| - 0.1 12.5 2.6 0.84 9.5 0.8 2.2 2 0 0 2 2 2 0 PASTA domain Carboxyl_trans PF01039.22 gi|119719074|ref|YP_919569.1| - 1.7e-188 627.3 0.0 1.9e-188 627.1 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|119719074|ref|YP_919569.1| - 6.6e-05 22.5 0.2 0.00032 20.2 0.0 2.0 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) CT_A_B PF02626.15 gi|119719075|ref|YP_919570.1| - 1.1e-05 25.3 0.1 2e-05 24.3 0.1 1.4 1 1 0 1 1 1 1 Carboxyltransferase domain, subdomain A and B Glyco_tranf_2_3 PF13641.6 gi|119719076|ref|YP_919571.1| - 8.5e-29 101.1 0.0 1.1e-28 100.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|119719076|ref|YP_919571.1| - 6.9e-24 84.6 0.2 1.1e-23 83.9 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|119719076|ref|YP_919571.1| - 4e-18 66.0 10.8 2.4e-17 63.5 10.8 2.1 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|119719076|ref|YP_919571.1| - 1.3e-12 47.6 0.0 2e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|119719076|ref|YP_919571.1| - 1.4e-07 31.2 0.1 5.6e-07 29.3 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|119719076|ref|YP_919571.1| - 0.00066 19.4 0.0 0.0017 18.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family PG_binding_2 PF08823.11 gi|119719076|ref|YP_919571.1| - 0.22 11.9 1.0 12 6.3 0.0 2.8 3 0 0 3 3 3 0 Putative peptidoglycan binding domain UBA PF00627.31 gi|119719077|ref|YP_919572.1| - 0.0042 16.9 0.0 0.06 13.3 0.0 2.3 2 0 0 2 2 2 1 UBA/TS-N domain UBA_3 PF09288.10 gi|119719077|ref|YP_919572.1| - 0.067 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain DNA_binding_1 PF01035.20 gi|119719078|ref|YP_919573.1| - 3.2e-25 88.1 0.0 5.2e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_AsnC-type PF13404.6 gi|119719078|ref|YP_919573.1| - 0.12 12.2 0.7 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|119719078|ref|YP_919573.1| - 0.15 11.7 0.0 0.32 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ArsA_ATPase PF02374.15 gi|119719079|ref|YP_919574.1| - 1.2e-31 110.1 0.0 1.5e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|119719079|ref|YP_919574.1| - 4.7e-10 39.6 0.0 1.2e-09 38.3 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|119719079|ref|YP_919574.1| - 4.9e-07 29.4 0.0 7e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|119719079|ref|YP_919574.1| - 9.9e-06 25.6 0.0 1.6e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|119719079|ref|YP_919574.1| - 0.0055 16.6 0.0 0.017 15.1 0.0 1.7 2 0 0 2 2 2 1 Adenylylsulphate kinase NB-ARC PF00931.22 gi|119719079|ref|YP_919574.1| - 0.0082 15.4 0.1 0.032 13.4 0.1 1.8 2 0 0 2 2 2 1 NB-ARC domain Fer4_NifH PF00142.18 gi|119719079|ref|YP_919574.1| - 0.0095 15.4 0.0 0.022 14.2 0.1 1.7 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|119719079|ref|YP_919574.1| - 0.054 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|119719079|ref|YP_919574.1| - 0.057 14.0 0.0 0.11 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|119719079|ref|YP_919574.1| - 0.12 11.9 0.2 0.27 10.8 0.2 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|119719079|ref|YP_919574.1| - 0.18 11.2 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein MipZ PF09140.11 gi|119719079|ref|YP_919574.1| - 0.19 11.0 0.1 0.37 10.0 0.1 1.4 1 0 0 1 1 1 0 ATPase MipZ AAA PF00004.29 gi|119719079|ref|YP_919574.1| - 0.2 12.1 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4129 PF13559.6 gi|119719080|ref|YP_919575.1| - 1.7e-10 41.0 0.1 3.7e-10 39.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) AAA_3 PF07726.11 gi|119719082|ref|YP_919577.1| - 2.1e-66 221.7 0.1 3.4e-66 221.0 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|119719082|ref|YP_919577.1| - 4.4e-21 74.5 1.1 8.8e-21 73.5 1.1 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|119719082|ref|YP_919577.1| - 1.9e-14 53.8 0.0 1.1e-13 51.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119719082|ref|YP_919577.1| - 0.00067 20.1 0.0 0.0015 18.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|119719082|ref|YP_919577.1| - 0.00079 18.6 0.1 0.0037 16.4 0.0 2.1 2 1 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|119719082|ref|YP_919577.1| - 0.0026 17.5 0.0 0.0071 16.1 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|119719082|ref|YP_919577.1| - 0.0029 17.4 0.0 0.074 12.8 0.0 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|119719082|ref|YP_919577.1| - 0.0072 15.7 0.2 1.1 8.6 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_lid PF17855.1 gi|119719082|ref|YP_919577.1| - 0.025 15.0 0.2 0.051 14.0 0.2 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain NUT PF12881.7 gi|119719082|ref|YP_919577.1| - 0.048 12.1 0.0 0.065 11.7 0.0 1.1 1 0 0 1 1 1 0 NUT protein DUF58 PF01882.18 gi|119719083|ref|YP_919578.1| - 3.9e-15 55.9 0.0 1e-14 54.5 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|119719083|ref|YP_919578.1| - 0.016 15.5 0.0 0.036 14.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF11 bMG10 PF17973.1 gi|119719083|ref|YP_919578.1| - 0.056 13.6 0.2 3.6 7.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial Alpha-2-macroglobulin MG10 domain BatD PF13584.6 gi|119719083|ref|YP_919578.1| - 0.17 10.7 0.0 0.24 10.1 0.0 1.1 1 0 0 1 1 1 0 Oxygen tolerance Monooxygenase_B PF04744.12 gi|119719083|ref|YP_919578.1| - 0.2 10.4 0.0 0.36 9.6 0.0 1.3 1 0 0 1 1 1 0 Monooxygenase subunit B protein SepA PF17080.5 gi|119719084|ref|YP_919579.1| - 0.11 12.9 3.7 0.24 11.7 0.3 2.2 1 1 0 2 2 2 0 Multidrug Resistance efflux pump ADK PF00406.22 gi|119719085|ref|YP_919580.1| - 1.7e-47 161.3 0.0 2.2e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|119719085|ref|YP_919580.1| - 4.2e-23 82.3 0.0 7.2e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|119719085|ref|YP_919580.1| - 5.5e-18 64.6 3.1 1e-17 63.8 3.1 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|119719085|ref|YP_919580.1| - 1.1e-05 25.9 0.0 1.8e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|119719085|ref|YP_919580.1| - 0.00044 20.6 0.9 0.0058 16.9 0.6 2.3 1 1 1 2 2 2 1 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|119719085|ref|YP_919580.1| - 0.00098 19.3 0.0 0.0069 16.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|119719085|ref|YP_919580.1| - 0.0014 19.1 0.0 0.0021 18.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF3039 PF11238.8 gi|119719085|ref|YP_919580.1| - 0.0023 17.6 0.3 0.0044 16.7 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3039) AAA_28 PF13521.6 gi|119719085|ref|YP_919580.1| - 0.0025 18.1 0.0 0.0033 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|119719085|ref|YP_919580.1| - 0.0046 16.7 0.0 0.0073 16.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase Zn_ribbon_recom PF13408.6 gi|119719085|ref|YP_919580.1| - 0.0051 17.3 0.6 0.79 10.3 0.2 2.4 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain Auto_anti-p27 PF06677.12 gi|119719085|ref|YP_919580.1| - 0.026 14.7 0.4 1.2 9.3 0.1 2.5 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.19 gi|119719085|ref|YP_919580.1| - 0.03 14.1 0.6 0.068 13.0 0.1 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TIP49 PF06068.13 gi|119719085|ref|YP_919580.1| - 0.078 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain zf-IS66 PF13005.7 gi|119719085|ref|YP_919580.1| - 0.095 13.1 3.6 2.6 8.5 0.1 3.7 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 Thymidylate_kin PF02223.17 gi|119719085|ref|YP_919580.1| - 0.12 12.0 0.1 4.7 6.8 0.0 2.4 3 0 0 3 3 3 0 Thymidylate kinase DUF815 PF05673.13 gi|119719085|ref|YP_919580.1| - 0.14 11.3 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|119719085|ref|YP_919580.1| - 0.17 11.6 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain zf_C2H2_13 PF18508.1 gi|119719085|ref|YP_919580.1| - 0.55 9.9 3.6 9.3 5.9 0.6 2.3 2 0 0 2 2 2 0 Zinc finger domain Nudix_N_2 PF14803.6 gi|119719085|ref|YP_919580.1| - 0.73 9.8 5.9 5.7 7.0 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal PmbA_TldD PF01523.16 gi|119719086|ref|YP_919581.1| - 8e-50 170.2 0.4 1.7e-49 169.2 0.1 1.6 2 0 0 2 2 2 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|119719087|ref|YP_919582.1| - 7.6e-43 147.4 0.0 9.6e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Transglut_core PF01841.19 gi|119719089|ref|YP_919584.1| - 1.2e-21 77.3 0.1 2.4e-21 76.3 0.1 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily Big_8 PF17961.1 gi|119719089|ref|YP_919584.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial Ig domain AA_kinase PF00696.28 gi|119719090|ref|YP_919585.1| - 1.7e-28 99.8 0.0 4.1e-28 98.6 0.0 1.6 1 1 0 1 1 1 1 Amino acid kinase family HTH_1 PF00126.27 gi|119719091|ref|YP_919586.1| - 1.9e-15 56.6 0.3 2.9e-15 55.9 0.3 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|119719091|ref|YP_919586.1| - 0.0062 16.3 0.3 0.017 14.9 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|119719091|ref|YP_919586.1| - 0.0078 16.2 0.3 0.012 15.7 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn helix ThiS PF02597.20 gi|119719092|ref|YP_919587.1| - 1.3e-11 44.9 0.0 2.2e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|119719092|ref|YP_919587.1| - 0.02 14.7 0.3 0.15 12.0 0.0 2.1 2 1 0 2 2 2 0 Mut7-C ubiquitin Fer4_7 PF12838.7 gi|119719093|ref|YP_919588.1| - 7.4e-15 55.3 44.2 8.8e-09 35.8 12.7 5.0 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119719093|ref|YP_919588.1| - 1.3e-14 53.3 41.8 3.5e-05 23.4 5.3 6.2 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119719093|ref|YP_919588.1| - 1.9e-14 53.5 31.0 6.6e-09 35.8 10.3 4.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719093|ref|YP_919588.1| - 1.4e-11 44.0 51.7 0.00012 22.0 2.4 6.1 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119719093|ref|YP_919588.1| - 1e-09 37.9 49.8 0.00044 20.2 4.5 7.1 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119719093|ref|YP_919588.1| - 1.8e-09 37.6 34.4 2.3e-08 34.0 7.3 4.2 5 1 1 6 6 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719093|ref|YP_919588.1| - 1.9e-09 37.5 43.2 1.6e-08 34.5 10.4 4.9 4 2 1 6 6 6 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119719093|ref|YP_919588.1| - 5.9e-09 36.3 30.5 0.0014 19.0 0.9 5.5 5 1 1 6 6 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119719093|ref|YP_919588.1| - 6.1e-09 36.7 35.6 0.013 16.4 1.6 5.3 3 2 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|119719093|ref|YP_919588.1| - 1.6e-05 25.4 42.2 0.003 18.1 2.1 5.6 4 3 1 5 5 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119719093|ref|YP_919588.1| - 2.8e-05 24.3 57.4 0.00091 19.6 3.7 7.0 8 0 0 8 8 7 4 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119719093|ref|YP_919588.1| - 0.0025 18.6 4.1 0.0025 18.6 4.1 6.7 9 0 0 9 9 6 4 4Fe-4S binding domain zf-dskA_traR PF01258.17 gi|119719093|ref|YP_919588.1| - 0.043 13.8 0.1 0.043 13.8 0.1 5.0 6 0 0 6 6 6 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_15 PF17032.5 gi|119719093|ref|YP_919588.1| - 0.25 12.1 19.7 0.28 11.9 4.7 4.0 3 1 1 4 4 3 0 zinc-ribbon family Fer4_22 PF17179.4 gi|119719093|ref|YP_919588.1| - 0.27 12.1 25.5 2.1 9.2 0.0 5.4 5 1 0 6 6 6 0 4Fe-4S dicluster domain AFOR_C PF01314.18 gi|119719094|ref|YP_919589.1| - 3.8e-148 493.6 0.0 4.6e-148 493.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|119719094|ref|YP_919589.1| - 6.6e-77 257.9 0.2 1.2e-76 257.0 0.2 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Peptidase_M42 PF05343.14 gi|119719095|ref|YP_919590.1| - 2.4e-87 292.6 0.0 2.8e-87 292.4 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|119719095|ref|YP_919590.1| - 1.5e-09 37.9 0.1 4.5e-09 36.3 0.1 1.8 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|119719095|ref|YP_919590.1| - 4.2e-08 33.1 0.0 6.3e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|119719095|ref|YP_919590.1| - 0.0026 16.6 0.0 0.12 11.1 0.0 2.1 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) NTP_transf_3 PF12804.7 gi|119719096|ref|YP_919591.1| - 8.2e-23 81.5 2.2 1e-22 81.2 2.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|119719096|ref|YP_919591.1| - 0.061 12.9 0.0 0.076 12.6 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyl transferase Proton_antipo_M PF00361.20 gi|119719098|ref|YP_919593.1| - 4.4e-58 196.8 23.0 4.4e-58 196.8 23.0 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|119719098|ref|YP_919593.1| - 6.1e-05 22.5 2.3 6.1e-05 22.5 2.3 2.2 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|119719098|ref|YP_919593.1| - 0.00081 19.4 0.5 0.0037 17.3 0.0 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q6 PF01058.22 gi|119719099|ref|YP_919594.1| - 3.4e-26 91.6 1.7 5.5e-26 90.9 1.7 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_7 PF12838.7 gi|119719100|ref|YP_919595.1| - 7.1e-17 61.7 34.9 4.5e-10 40.0 12.2 2.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119719100|ref|YP_919595.1| - 1.1e-14 53.5 20.6 4.5e-08 32.6 6.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119719100|ref|YP_919595.1| - 1.6e-11 44.2 32.4 7.1e-07 29.3 11.7 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719100|ref|YP_919595.1| - 1.1e-09 38.2 26.3 4.3e-07 30.0 14.6 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119719100|ref|YP_919595.1| - 1.5e-07 31.8 12.4 8.1e-05 23.0 2.7 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119719100|ref|YP_919595.1| - 3.3e-07 30.4 19.3 2.3e-06 27.6 9.8 2.4 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719100|ref|YP_919595.1| - 6.6e-07 29.1 14.8 6.7e-06 26.0 5.8 3.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119719100|ref|YP_919595.1| - 1.5e-06 29.0 20.1 0.005 17.7 8.7 2.9 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|119719100|ref|YP_919595.1| - 3.8e-06 26.7 21.8 1.6e-05 24.7 4.0 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119719100|ref|YP_919595.1| - 0.0048 17.8 19.2 0.024 15.5 3.2 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain HypA PF01155.19 gi|119719100|ref|YP_919595.1| - 0.013 15.5 0.5 0.013 15.5 0.5 2.1 1 1 1 2 2 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2321 PF10083.9 gi|119719100|ref|YP_919595.1| - 0.013 15.1 0.7 0.013 15.1 0.7 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Fer4_17 PF13534.6 gi|119719100|ref|YP_919595.1| - 0.019 15.5 21.2 0.17 12.5 5.7 3.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119719100|ref|YP_919595.1| - 0.059 13.9 27.3 0.081 13.5 1.9 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain zf_UBZ PF18439.1 gi|119719100|ref|YP_919595.1| - 0.49 10.0 0.1 0.49 10.0 0.1 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Fer4_15 PF13459.6 gi|119719100|ref|YP_919595.1| - 1.1 10.1 15.1 0.22 12.3 2.2 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|119719100|ref|YP_919595.1| - 2.3 8.4 11.1 3.7 7.8 8.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719100|ref|YP_919595.1| - 5.8 7.5 19.3 1.3 9.6 4.3 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Complex1_49kDa PF00346.19 gi|119719101|ref|YP_919596.1| - 2.8e-60 203.7 0.1 1.2e-44 152.4 0.2 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|119719101|ref|YP_919596.1| - 4.7e-25 88.6 0.0 1.1e-24 87.4 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|119719101|ref|YP_919596.1| - 1.2e-18 67.3 4.4 7.4e-16 58.1 0.3 3.2 3 1 1 4 4 4 2 Nickel-dependent hydrogenase BMFP PF04380.13 gi|119719101|ref|YP_919596.1| - 0.2 12.2 0.1 0.45 11.0 0.1 1.5 1 0 0 1 1 1 0 Membrane fusogenic activity Proton_antipo_M PF00361.20 gi|119719102|ref|YP_919597.1| - 1.9e-46 158.6 22.9 1.9e-46 158.6 22.9 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119719102|ref|YP_919597.1| - 0.00016 21.7 2.2 0.00016 21.7 2.2 2.6 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|119719103|ref|YP_919598.1| - 3.1e-45 154.6 27.6 3.1e-45 154.6 27.6 2.7 3 1 1 4 4 4 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119719103|ref|YP_919598.1| - 6.7e-08 32.5 2.8 6.7e-08 32.5 2.8 3.6 3 1 1 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|119719104|ref|YP_919599.1| - 2.1e-06 27.3 1.2 2.1e-06 27.3 1.2 3.0 2 2 1 3 3 3 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YesK PF14150.6 gi|119719104|ref|YP_919599.1| - 4.7 7.5 10.2 4.7 7.5 0.1 2.7 3 0 0 3 3 3 0 YesK-like protein NADHdh PF00146.21 gi|119719105|ref|YP_919600.1| - 3.4e-46 157.9 20.7 4.1e-46 157.6 20.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|119719106|ref|YP_919601.1| - 3.8e-59 200.3 18.4 3.8e-59 200.3 18.4 2.8 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119719106|ref|YP_919601.1| - 0.0018 18.3 6.7 0.0018 18.3 6.7 3.3 4 1 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4235 PF14019.6 gi|119719106|ref|YP_919601.1| - 2 8.5 5.0 0.74 9.9 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4235) Fer4_11 PF13247.6 gi|119719107|ref|YP_919602.1| - 4.7e-25 87.6 13.8 4.7e-25 87.6 13.8 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119719107|ref|YP_919602.1| - 1.5e-10 41.0 50.0 9.9e-06 25.6 8.7 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719107|ref|YP_919602.1| - 1.9e-10 40.4 42.5 1.2e-05 25.2 1.6 5.3 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119719107|ref|YP_919602.1| - 4.5e-10 40.0 36.3 3.6e-05 24.3 13.3 4.0 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119719107|ref|YP_919602.1| - 1.8e-09 37.0 47.6 6.2e-07 29.0 2.0 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119719107|ref|YP_919602.1| - 6.3e-09 36.2 41.2 0.0015 19.3 3.1 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119719107|ref|YP_919602.1| - 8.8e-09 35.2 34.6 0.00077 19.8 1.8 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119719107|ref|YP_919602.1| - 2.2e-08 34.1 34.4 9.8e-06 25.6 9.1 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119719107|ref|YP_919602.1| - 4.4e-08 32.7 41.6 2e-05 24.4 1.5 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119719107|ref|YP_919602.1| - 9.4e-06 26.5 32.7 0.14 13.1 3.6 4.9 3 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119719107|ref|YP_919602.1| - 0.00017 21.6 34.4 0.00088 19.4 13.6 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119719107|ref|YP_919602.1| - 0.0018 18.8 28.9 0.058 13.9 0.8 4.4 2 1 3 5 5 5 4 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719107|ref|YP_919602.1| - 0.12 12.9 1.4 0.12 12.9 1.4 4.6 3 3 1 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Peptidase_S64 PF08192.11 gi|119719107|ref|YP_919602.1| - 0.27 9.7 0.0 0.35 9.3 0.0 1.0 1 0 0 1 1 1 0 Peptidase family S64 Fer4_8 PF13183.6 gi|119719107|ref|YP_919602.1| - 0.37 11.3 33.7 17 6.0 10.0 4.3 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|119719107|ref|YP_919602.1| - 1.2 8.9 29.0 2.5 7.9 0.5 4.1 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.22 gi|119719108|ref|YP_919603.1| - 2.4e-102 343.1 0.0 2.8e-102 342.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|119719108|ref|YP_919603.1| - 5.5e-27 94.0 0.1 1.3e-26 92.8 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|119719108|ref|YP_919603.1| - 1.5e-15 56.9 0.4 3.8e-15 55.6 0.4 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Form_Nir_trans PF01226.17 gi|119719109|ref|YP_919604.1| - 1.4e-72 243.9 22.8 2.4e-72 243.1 22.8 1.4 1 0 0 1 1 1 1 Formate/nitrite transporter Fer4_23 PF18009.1 gi|119719110|ref|YP_919605.1| - 0.11 13.0 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S iron-sulfur cluster binding domain PsiE PF06146.12 gi|119719111|ref|YP_919606.1| - 6.5e-08 32.8 10.5 6.5e-08 32.8 10.5 2.0 2 0 0 2 2 2 1 Phosphate-starvation-inducible E CTP_transf_1 PF01148.20 gi|119719111|ref|YP_919606.1| - 0.19 11.4 9.3 0.24 11.1 9.3 1.1 1 0 0 1 1 1 0 Cytidylyltransferase family Far-17a_AIG1 PF04750.14 gi|119719111|ref|YP_919606.1| - 0.64 9.3 7.3 1.3 8.3 7.3 1.5 1 1 0 1 1 1 0 FAR-17a/AIG1-like protein Macro PF01661.21 gi|119719112|ref|YP_919607.1| - 3.4e-36 123.8 0.0 6.6e-36 122.9 0.0 1.5 1 0 0 1 1 1 1 Macro domain CLP1_P PF16575.5 gi|119719113|ref|YP_919608.1| - 1.1e-38 133.0 0.0 1.6e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_N PF16573.5 gi|119719113|ref|YP_919608.1| - 0.0029 17.8 0.0 0.0066 16.6 0.0 1.6 1 0 0 1 1 1 1 N-terminal beta-sandwich domain of polyadenylation factor ParA PF10609.9 gi|119719113|ref|YP_919608.1| - 0.0032 16.9 0.2 0.0086 15.6 0.3 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|119719113|ref|YP_919608.1| - 0.004 17.2 0.0 0.0088 16.1 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain LpxK PF02606.14 gi|119719113|ref|YP_919608.1| - 0.028 13.5 0.1 0.081 12.0 0.1 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase SRP54 PF00448.22 gi|119719113|ref|YP_919608.1| - 0.068 12.8 0.1 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATPase PF06745.13 gi|119719113|ref|YP_919608.1| - 0.084 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 KaiC MutL PF13941.6 gi|119719113|ref|YP_919608.1| - 0.088 11.4 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 MutL protein MobB PF03205.14 gi|119719113|ref|YP_919608.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|119719113|ref|YP_919608.1| - 1.4 7.8 7.1 2.6 7.0 7.1 1.4 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FBPase_3 PF01950.16 gi|119719114|ref|YP_919609.1| - 2.5e-186 619.1 0.0 2.8e-186 618.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase E1-E2_ATPase PF00122.20 gi|119719115|ref|YP_919610.1| - 1.2e-54 184.6 3.2 1.2e-54 184.6 3.2 2.8 3 1 1 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|119719115|ref|YP_919610.1| - 8e-38 130.0 3.0 8e-38 130.0 3.0 2.4 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|119719115|ref|YP_919610.1| - 3.6e-26 92.7 5.3 1.6e-25 90.6 5.3 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|119719115|ref|YP_919610.1| - 1.1e-21 76.3 0.5 6.1e-21 73.9 0.0 2.6 3 0 0 3 3 3 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|119719115|ref|YP_919610.1| - 4.7e-15 55.4 0.0 9.9e-15 54.4 0.0 1.5 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|119719115|ref|YP_919610.1| - 5.8e-07 30.1 0.2 2.6e-06 28.0 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|119719115|ref|YP_919610.1| - 1.3e-06 28.4 0.1 0.00028 20.7 0.2 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF3784 PF12650.7 gi|119719115|ref|YP_919610.1| - 0.11 12.7 0.9 0.54 10.5 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) PAC2 PF09754.9 gi|119719116|ref|YP_919611.1| - 1.3e-43 149.5 0.1 1.5e-43 149.3 0.1 1.0 1 0 0 1 1 1 1 PAC2 family T6SS_VipA PF05591.12 gi|119719116|ref|YP_919611.1| - 0.099 12.4 0.5 0.16 11.7 0.5 1.2 1 0 0 1 1 1 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 FHIPEP PF00771.20 gi|119719116|ref|YP_919611.1| - 0.21 10.0 0.1 0.28 9.6 0.1 1.1 1 0 0 1 1 1 0 FHIPEP family TatD_DNase PF01026.21 gi|119719117|ref|YP_919612.1| - 4e-44 150.9 0.0 4.8e-44 150.7 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DUF1415 PF07209.12 gi|119719117|ref|YP_919612.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1415) Inositol_P PF00459.25 gi|119719118|ref|YP_919613.1| - 3.6e-34 118.5 0.0 4.2e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|119719118|ref|YP_919613.1| - 0.00028 20.4 0.0 0.00047 19.7 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Metallophos_2 PF12850.7 gi|119719119|ref|YP_919614.1| - 5e-30 104.9 0.1 5.9e-30 104.6 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|119719119|ref|YP_919614.1| - 2.6e-08 34.6 0.1 6.5e-05 23.5 0.0 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|119719119|ref|YP_919614.1| - 8.9e-08 31.8 0.3 1.9e-05 24.1 0.0 2.1 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily SWIM PF04434.17 gi|119719120|ref|YP_919615.1| - 0.00072 19.2 0.3 0.0014 18.2 0.3 1.4 1 0 0 1 1 1 1 SWIM zinc finger LPG_synthase_TM PF03706.13 gi|119719121|ref|YP_919616.1| - 1.5e-41 142.9 36.9 1.8e-41 142.6 36.9 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region LRR19-TM PF15176.6 gi|119719121|ref|YP_919616.1| - 2.9 8.0 4.6 6.2 6.9 0.1 2.9 2 1 1 3 3 3 0 Leucine-rich repeat family 19 TM domain Amino_oxidase PF01593.24 gi|119719122|ref|YP_919617.1| - 8.2e-14 51.7 0.3 3.4e-12 46.4 0.3 2.1 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|119719122|ref|YP_919617.1| - 2.4e-13 50.1 0.1 5.6e-13 48.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|119719122|ref|YP_919617.1| - 1.5e-06 27.6 0.5 2.3e-06 27.0 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|119719122|ref|YP_919617.1| - 2e-06 27.6 1.8 4.4e-06 26.5 1.0 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|119719122|ref|YP_919617.1| - 2.5e-06 26.9 0.0 9.9e-06 25.0 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|119719122|ref|YP_919617.1| - 8.2e-06 25.4 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|119719122|ref|YP_919617.1| - 1.2e-05 25.8 1.6 4.4e-05 24.0 0.4 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119719122|ref|YP_919617.1| - 0.0014 17.8 0.3 0.0023 17.1 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|119719122|ref|YP_919617.1| - 0.0016 17.2 0.0 0.0021 16.9 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|119719122|ref|YP_919617.1| - 0.0022 17.3 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|119719122|ref|YP_919617.1| - 0.019 14.0 0.2 0.054 12.5 0.1 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|119719122|ref|YP_919617.1| - 0.021 14.1 0.1 0.035 13.3 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.17 gi|119719122|ref|YP_919617.1| - 0.11 11.8 0.1 0.19 10.9 0.1 1.3 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 gi|119719122|ref|YP_919617.1| - 0.16 11.2 0.1 0.39 9.9 0.0 1.5 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|119719122|ref|YP_919617.1| - 0.2 11.5 0.1 0.31 10.9 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.26 gi|119719123|ref|YP_919618.1| - 4.8e-22 78.6 0.0 3.3e-21 75.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|119719123|ref|YP_919618.1| - 1.1e-16 61.4 0.0 1.5e-16 61.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|119719123|ref|YP_919618.1| - 1.1e-05 25.1 0.8 2.6e-05 23.8 0.8 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|119719123|ref|YP_919618.1| - 0.00029 20.8 0.3 0.00052 20.0 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|119719123|ref|YP_919618.1| - 0.0045 16.5 0.0 0.0093 15.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|119719123|ref|YP_919618.1| - 0.023 15.2 0.1 3 8.4 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.6 gi|119719123|ref|YP_919618.1| - 0.024 14.3 0.0 0.056 13.1 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase like family DUF3487 PF11990.8 gi|119719123|ref|YP_919618.1| - 0.041 13.8 0.5 0.078 12.9 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) AAA_24 PF13479.6 gi|119719123|ref|YP_919618.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain tRNA_anti-codon PF01336.25 gi|119719124|ref|YP_919619.1| - 0.0013 18.6 0.1 0.0022 17.9 0.1 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|119719124|ref|YP_919619.1| - 0.0045 16.9 0.0 0.01 15.8 0.0 1.5 1 1 0 1 1 1 1 Replication protein A OB domain DUF4147 PF13660.6 gi|119719125|ref|YP_919620.1| - 2.4e-73 246.5 1.4 3.6e-73 245.9 1.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|119719125|ref|YP_919620.1| - 1.4e-38 131.5 1.5 2.6e-38 130.6 1.5 1.5 1 0 0 1 1 1 1 MOFRL family OCD_Mu_crystall PF02423.15 gi|119719126|ref|YP_919621.1| - 3.5e-95 318.6 0.1 4.1e-95 318.4 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|119719126|ref|YP_919621.1| - 0.085 13.4 0.0 0.17 12.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent SpoIIM PF01944.17 gi|119719127|ref|YP_919622.1| - 1.9e-28 99.5 15.7 2.1e-28 99.3 15.7 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M EIID-AGA PF03613.14 gi|119719127|ref|YP_919622.1| - 0.018 14.2 2.5 0.026 13.7 2.5 1.2 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF5379 PF17350.2 gi|119719127|ref|YP_919622.1| - 0.56 10.5 5.1 11 6.4 0.1 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5379) Glyco_hydro_57 PF03065.15 gi|119719128|ref|YP_919623.1| - 3.2e-28 98.9 1.9 7e-27 94.5 1.9 2.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF824 PF05688.11 gi|119719128|ref|YP_919623.1| - 0.17 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) Alba PF01918.21 gi|119719129|ref|YP_919624.1| - 3e-16 59.0 0.1 4.4e-16 58.4 0.1 1.3 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|119719129|ref|YP_919624.1| - 0.029 14.3 0.4 0.11 12.5 0.1 1.9 1 1 1 2 2 2 0 Rpp20 subunit of nuclear RNase MRP and P ABC_tran PF00005.27 gi|119719130|ref|YP_919625.1| - 1.8e-40 138.6 0.0 6.3e-20 72.1 0.0 2.5 2 1 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|119719130|ref|YP_919625.1| - 4.2e-12 45.7 1.4 9e-12 44.6 1.4 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|119719130|ref|YP_919625.1| - 3e-11 43.7 6.1 0.0097 15.7 0.1 4.3 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119719130|ref|YP_919625.1| - 1.9e-09 37.3 1.7 0.02 14.3 0.0 4.0 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|119719130|ref|YP_919625.1| - 6.7e-08 32.0 2.3 6.7e-08 32.0 2.3 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119719130|ref|YP_919625.1| - 2.5e-07 30.5 11.9 1.4e-05 25.0 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Rad17 PF03215.15 gi|119719130|ref|YP_919625.1| - 5.8e-05 23.1 0.0 0.22 11.4 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_16 PF13191.6 gi|119719130|ref|YP_919625.1| - 0.00011 22.6 0.1 0.19 12.1 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain Fer4_21 PF14697.6 gi|119719130|ref|YP_919625.1| - 0.00012 22.2 10.7 0.00018 21.5 10.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|119719130|ref|YP_919625.1| - 0.00012 21.9 0.3 0.13 12.0 0.1 2.4 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.6 gi|119719130|ref|YP_919625.1| - 0.00019 21.5 12.2 0.0014 18.7 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA PF00004.29 gi|119719130|ref|YP_919625.1| - 0.00074 20.0 0.5 0.32 11.4 0.0 3.5 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|119719130|ref|YP_919625.1| - 0.00085 19.0 0.7 1.7 8.5 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119719130|ref|YP_919625.1| - 0.00087 19.6 0.5 0.78 10.0 0.0 3.3 3 1 0 3 3 2 1 AAA domain Fer4_7 PF12838.7 gi|119719130|ref|YP_919625.1| - 0.0019 18.7 9.6 0.0039 17.8 9.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119719130|ref|YP_919625.1| - 0.0021 18.1 1.4 0.0021 18.1 1.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_23 PF13476.6 gi|119719130|ref|YP_919625.1| - 0.0029 18.2 1.3 0.29 11.6 0.3 2.3 2 0 0 2 2 2 1 AAA domain Fer4_9 PF13187.6 gi|119719130|ref|YP_919625.1| - 0.0039 17.3 12.2 0.0073 16.5 12.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.22 gi|119719130|ref|YP_919625.1| - 0.0085 16.5 0.1 2.7 8.4 0.0 3.0 3 0 0 3 3 2 1 RNA helicase AAA_18 PF13238.6 gi|119719130|ref|YP_919625.1| - 0.0096 16.5 0.4 4 8.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|119719130|ref|YP_919625.1| - 0.01 15.9 0.7 1.2 9.1 0.1 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain RsgA_GTPase PF03193.16 gi|119719130|ref|YP_919625.1| - 0.013 15.4 1.0 3.6 7.5 0.0 2.5 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|119719130|ref|YP_919625.1| - 0.017 15.4 1.0 5 7.3 0.0 3.3 3 0 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|119719130|ref|YP_919625.1| - 0.033 13.8 0.4 2 8.0 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|119719130|ref|YP_919625.1| - 0.033 13.9 0.2 3.1 7.4 0.1 2.5 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|119719130|ref|YP_919625.1| - 0.037 13.9 0.9 0.82 9.6 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|119719130|ref|YP_919625.1| - 0.045 13.8 0.1 9.7 6.2 0.1 3.4 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|119719130|ref|YP_919625.1| - 0.052 13.3 1.1 6.5 6.4 0.0 2.9 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|119719130|ref|YP_919625.1| - 0.053 12.5 0.5 3.8 6.4 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 gi|119719130|ref|YP_919625.1| - 0.13 12.5 0.2 24 5.3 0.0 3.4 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|119719130|ref|YP_919625.1| - 0.26 11.3 1.3 7.6 6.5 0.1 3.2 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) Fer4_16 PF13484.6 gi|119719130|ref|YP_919625.1| - 0.48 11.4 11.9 0.07 14.1 2.2 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain AAA_19 PF13245.6 gi|119719130|ref|YP_919625.1| - 0.82 10.0 2.2 12 6.3 0.2 3.0 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|119719130|ref|YP_919625.1| - 1.2 9.0 3.8 3.3 7.6 0.1 3.0 4 0 0 4 4 2 0 NTPase Fer4_4 PF12800.7 gi|119719130|ref|YP_919625.1| - 1.7 9.3 13.5 0.18 12.4 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_33 PF13671.6 gi|119719130|ref|YP_919625.1| - 2.2 8.4 3.5 8.9 6.5 0.0 3.1 4 0 0 4 4 3 0 AAA domain Fer4_3 PF12798.7 gi|119719130|ref|YP_919625.1| - 6.7 7.9 16.0 2.5 9.2 4.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119719130|ref|YP_919625.1| - 9.8 6.8 11.5 60 4.3 11.5 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain RNA_POL_M_15KD PF02150.16 gi|119719131|ref|YP_919626.1| - 3.8e-09 36.3 1.2 9.7e-09 35.0 1.2 1.7 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.19 gi|119719131|ref|YP_919626.1| - 0.00057 19.6 2.7 0.0008 19.1 2.7 1.3 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|119719131|ref|YP_919626.1| - 0.0017 17.9 1.5 0.0071 15.8 1.5 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding Baculo_PP31 PF05311.11 gi|119719131|ref|YP_919626.1| - 0.0049 16.4 2.5 0.0056 16.2 2.5 1.1 1 0 0 1 1 1 1 Baculovirus 33KDa late protein (PP31) A2L_zn_ribbon PF08792.10 gi|119719131|ref|YP_919626.1| - 0.0076 15.9 2.2 0.58 10.0 0.1 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119719131|ref|YP_919626.1| - 0.0079 16.2 0.8 0.014 15.3 0.8 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|119719131|ref|YP_919626.1| - 0.0082 16.2 1.0 0.016 15.2 1.0 1.6 1 1 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|119719131|ref|YP_919626.1| - 0.012 15.9 1.8 0.03 14.7 1.8 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.11 gi|119719131|ref|YP_919626.1| - 0.02 14.5 4.3 0.48 10.1 4.3 2.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Tnp_zf-ribbon_2 PF13842.6 gi|119719131|ref|YP_919626.1| - 0.026 15.3 0.9 0.046 14.5 0.9 1.4 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon zf-ribbon_3 PF13248.6 gi|119719131|ref|YP_919626.1| - 0.032 13.6 1.9 0.6 9.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|119719131|ref|YP_919626.1| - 0.044 13.9 2.1 5.5 7.1 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain C1_1 PF00130.22 gi|119719131|ref|YP_919626.1| - 0.072 13.0 0.9 0.11 12.4 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.6 gi|119719131|ref|YP_919626.1| - 0.11 12.3 4.8 3.2 7.6 2.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|119719131|ref|YP_919626.1| - 0.12 12.3 4.9 0.98 9.4 4.9 2.2 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_15 PF17032.5 gi|119719131|ref|YP_919626.1| - 0.35 11.7 6.2 0.55 11.0 0.6 2.4 2 1 0 2 2 2 0 zinc-ribbon family zf-IS66 PF13005.7 gi|119719131|ref|YP_919626.1| - 0.79 10.2 4.5 1.1 9.7 0.3 2.6 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 NOB1_Zn_bind PF08772.11 gi|119719131|ref|YP_919626.1| - 0.89 9.8 5.3 1.4 9.2 0.5 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like THUMP PF02926.17 gi|119719132|ref|YP_919627.1| - 3.1e-16 59.8 1.1 4.2e-16 59.4 1.1 1.2 1 0 0 1 1 1 1 THUMP domain CGI-121 PF08617.10 gi|119719133|ref|YP_919628.1| - 0.00015 21.9 0.0 0.00018 21.6 0.0 1.2 1 0 0 1 1 1 1 Kinase binding protein CGI-121 SAM_adeno_trans PF01887.16 gi|119719134|ref|YP_919629.1| - 1e-77 260.8 0.0 1.1e-77 260.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase RTC PF01137.21 gi|119719135|ref|YP_919630.1| - 1.8e-75 252.9 0.0 2.1e-75 252.8 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|119719135|ref|YP_919630.1| - 2.9e-17 63.0 0.1 5.9e-17 62.1 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CDP-OH_P_transf PF01066.21 gi|119719136|ref|YP_919631.1| - 1.3e-13 51.5 1.1 1.3e-13 51.5 1.1 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase TMEM164 PF14808.6 gi|119719136|ref|YP_919631.1| - 0.054 12.8 0.1 0.071 12.4 0.1 1.1 1 0 0 1 1 1 0 TMEM164 family NAC PF01849.18 gi|119719137|ref|YP_919632.1| - 2.9e-12 46.4 0.3 5e-12 45.6 0.3 1.4 1 0 0 1 1 1 1 NAC domain HOIP-UBA PF16678.5 gi|119719137|ref|YP_919632.1| - 0.0059 16.6 0.0 0.0075 16.3 0.0 1.3 1 0 0 1 1 1 1 HOIP UBA domain pair UBA_4 PF14555.6 gi|119719137|ref|YP_919632.1| - 0.1 12.4 0.0 0.3 10.9 0.0 1.7 2 0 0 2 2 2 0 UBA-like domain DUF5616 PF18481.1 gi|119719138|ref|YP_919633.1| - 1e-30 106.9 0.0 1.3e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|119719138|ref|YP_919633.1| - 1.9e-20 72.3 0.7 1.9e-20 72.3 0.7 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF434) tRNA-synt_2c PF01411.19 gi|119719139|ref|YP_919634.1| - 4.6e-121 405.0 0.0 7.4e-121 404.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|119719139|ref|YP_919634.1| - 6.3e-14 51.8 0.4 1.4e-13 50.7 0.4 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|119719139|ref|YP_919634.1| - 3.4e-09 37.2 0.2 1.1e-08 35.6 0.2 1.9 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|119719139|ref|YP_919634.1| - 0.00044 19.6 0.5 0.00086 18.6 0.5 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit CCDC-167 PF15188.6 gi|119719139|ref|YP_919634.1| - 0.012 16.0 3.4 0.056 13.8 0.1 2.8 3 0 0 3 3 3 0 Coiled-coil domain-containing protein 167 bZIP_2 PF07716.15 gi|119719139|ref|YP_919634.1| - 0.078 13.1 1.7 0.22 11.6 1.7 1.8 1 0 0 1 1 1 0 Basic region leucine zipper FH2 PF02181.23 gi|119719139|ref|YP_919634.1| - 0.092 11.8 0.4 0.2 10.7 0.1 1.6 2 0 0 2 2 2 0 Formin Homology 2 Domain CLZ PF16526.5 gi|119719139|ref|YP_919634.1| - 0.093 13.1 0.1 0.093 13.1 0.1 2.8 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Pyr_excise PF03013.14 gi|119719139|ref|YP_919634.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase DUF5595 PF18077.1 gi|119719139|ref|YP_919634.1| - 0.13 12.4 0.8 0.42 10.7 0.8 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) DivIC PF04977.15 gi|119719139|ref|YP_919634.1| - 0.13 12.0 1.3 0.47 10.3 1.3 1.9 1 0 0 1 1 1 0 Septum formation initiator ADIP PF11559.8 gi|119719139|ref|YP_919634.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding ABC_tran_CTD PF16326.5 gi|119719139|ref|YP_919634.1| - 0.15 12.4 4.2 0.41 10.9 0.3 2.9 2 1 0 2 2 2 0 ABC transporter C-terminal domain HALZ PF02183.18 gi|119719139|ref|YP_919634.1| - 0.19 11.9 3.4 0.51 10.6 3.4 1.7 1 0 0 1 1 1 0 Homeobox associated leucine zipper DASH_Spc19 PF08287.11 gi|119719139|ref|YP_919634.1| - 0.25 11.2 3.1 5 7.0 0.1 2.3 2 0 0 2 2 2 0 Spc19 Prefoldin_2 PF01920.20 gi|119719139|ref|YP_919634.1| - 0.32 11.0 9.4 0.053 13.5 3.8 2.4 2 0 0 2 2 2 0 Prefoldin subunit bZIP_1 PF00170.21 gi|119719139|ref|YP_919634.1| - 0.5 10.5 5.8 1.2 9.3 5.8 1.6 1 0 0 1 1 1 0 bZIP transcription factor JIP_LZII PF16471.5 gi|119719139|ref|YP_919634.1| - 2.2 8.5 5.3 0.46 10.7 1.0 2.2 2 0 0 2 2 1 0 JNK-interacting protein leucine zipper II RL10P_insert PF17777.1 gi|119719140|ref|YP_919635.1| - 4.1e-24 84.4 0.0 1.4e-23 82.6 0.0 2.0 2 0 0 2 2 2 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|119719140|ref|YP_919635.1| - 1.3e-22 79.8 0.1 2.7e-22 78.8 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_L1 PF00687.21 gi|119719141|ref|YP_919636.1| - 2.4e-40 138.5 0.1 2.9e-40 138.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family NOG1_N PF17835.1 gi|119719141|ref|YP_919636.1| - 0.18 11.7 1.6 0.78 9.7 0.0 2.3 3 0 0 3 3 3 0 NOG1 N-terminal helical domain Ribosomal_L11 PF00298.19 gi|119719142|ref|YP_919637.1| - 1.7e-24 86.1 4.4 2.6e-24 85.5 4.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|119719142|ref|YP_919637.1| - 3.5e-24 84.4 0.6 7.3e-24 83.4 0.6 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_S19 PF00203.21 gi|119719143|ref|YP_919638.1| - 2.2e-32 110.7 0.6 3.4e-32 110.2 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Pyr_redox_2 PF07992.14 gi|119719144|ref|YP_919639.1| - 2.7e-46 158.1 0.2 3.3e-46 157.8 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119719144|ref|YP_919639.1| - 2.7e-11 43.9 6.3 3.4e-09 37.1 0.8 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119719144|ref|YP_919639.1| - 2.8e-09 37.0 6.2 0.012 15.2 0.0 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|119719144|ref|YP_919639.1| - 3.2e-06 27.2 1.6 3.3 7.7 0.0 4.1 3 1 1 4 4 4 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|119719144|ref|YP_919639.1| - 0.0029 16.9 0.6 0.72 9.0 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain Amino_oxidase PF01593.24 gi|119719144|ref|YP_919639.1| - 0.004 16.5 0.1 1.5 8.0 0.0 2.4 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|119719144|ref|YP_919639.1| - 0.0042 17.3 0.7 0.38 11.0 0.1 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|119719144|ref|YP_919639.1| - 0.0074 15.2 4.4 1.5 7.6 0.7 3.8 3 1 1 4 4 4 1 Tryptophan halogenase TrkA_N PF02254.18 gi|119719144|ref|YP_919639.1| - 0.0086 16.3 1.3 1.4 9.2 0.2 2.9 2 2 0 2 2 2 1 TrkA-N domain K_oxygenase PF13434.6 gi|119719144|ref|YP_919639.1| - 0.049 12.8 0.1 0.28 10.3 0.0 2.1 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|119719144|ref|YP_919639.1| - 0.086 11.5 2.6 9.8 4.7 0.0 3.4 3 1 1 4 4 4 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|119719144|ref|YP_919639.1| - 0.11 11.8 0.3 5.6 6.2 0.0 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|119719144|ref|YP_919639.1| - 0.21 10.6 1.3 3.8 6.5 0.2 2.2 2 0 0 2 2 2 0 FAD binding domain Ribosomal_L2_C PF03947.18 gi|119719145|ref|YP_919640.1| - 1.3e-37 128.8 1.9 2e-37 128.2 1.9 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|119719145|ref|YP_919640.1| - 7.4e-17 61.1 0.1 3.6e-16 58.9 0.0 2.2 3 0 0 3 3 3 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|119719146|ref|YP_919641.1| - 5.4e-21 74.8 4.1 5.8e-20 71.5 4.1 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|119719146|ref|YP_919641.1| - 0.019 14.8 0.1 0.024 14.5 0.1 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA DNA_mis_repair PF01119.19 gi|119719146|ref|YP_919641.1| - 0.034 13.8 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain Ribosomal_L4 PF00573.22 gi|119719147|ref|YP_919642.1| - 7.5e-42 143.2 0.6 9.1e-42 142.9 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|119719148|ref|YP_919643.1| - 8.7e-75 252.0 0.1 1.6e-74 251.1 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|119719149|ref|YP_919644.1| - 1.1e-52 179.3 0.0 1.3e-52 179.1 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|119719149|ref|YP_919644.1| - 0.0031 17.7 0.0 0.013 15.7 0.0 1.8 2 0 0 2 2 2 1 SpoU rRNA Methylase family FaeA PF04703.12 gi|119719150|ref|YP_919645.1| - 3.7e-05 24.0 0.1 4.6e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_9 PF08221.11 gi|119719150|ref|YP_919645.1| - 0.00048 20.2 0.1 0.00058 19.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|119719150|ref|YP_919645.1| - 0.0048 16.8 0.3 0.006 16.5 0.3 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119719150|ref|YP_919645.1| - 0.0077 15.8 0.0 0.0093 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2582 PF10771.9 gi|119719150|ref|YP_919645.1| - 0.019 15.1 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) RNA_pol_Rpc34 PF05158.12 gi|119719150|ref|YP_919645.1| - 0.042 13.2 0.1 0.046 13.1 0.1 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_DeoR PF08220.12 gi|119719150|ref|YP_919645.1| - 0.045 13.5 0.1 0.082 12.7 0.0 1.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|119719150|ref|YP_919645.1| - 0.063 13.2 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|119719150|ref|YP_919645.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain PheRS_DBD1 PF18552.1 gi|119719150|ref|YP_919645.1| - 0.13 12.1 0.0 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 PheRS DNA binding domain 1 SecY PF00344.20 gi|119719151|ref|YP_919646.1| - 2.5e-61 207.6 17.7 3e-61 207.4 17.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|119719151|ref|YP_919646.1| - 2.3e-12 46.5 0.1 1.2e-11 44.2 0.1 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p Trigger_N PF05697.13 gi|119719151|ref|YP_919646.1| - 0.26 11.6 0.0 0.43 10.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) Ribosomal_L27A PF00828.19 gi|119719152|ref|YP_919647.1| - 1e-20 74.7 0.5 1.3e-20 74.3 0.1 1.4 1 1 1 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|119719153|ref|YP_919648.1| - 1e-11 44.5 0.0 4.9e-11 42.3 0.0 2.0 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 gi|119719154|ref|YP_919649.1| - 3.5e-25 87.2 0.0 5.9e-25 86.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|119719154|ref|YP_919649.1| - 1.4e-21 76.2 0.9 1.4e-21 76.2 0.9 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|119719155|ref|YP_919650.1| - 3e-32 111.9 2.7 9.9e-23 80.9 1.1 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|119719155|ref|YP_919650.1| - 9.5e-10 39.3 0.1 2.3e-09 38.1 0.0 1.6 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|119719155|ref|YP_919650.1| - 0.00036 20.9 0.3 0.00051 20.4 0.3 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|119719156|ref|YP_919651.1| - 1.7e-50 170.8 1.5 1.9e-50 170.7 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.7 gi|119719156|ref|YP_919651.1| - 0.013 15.7 2.1 0.27 11.5 0.5 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.18 gi|119719157|ref|YP_919652.1| - 3e-35 120.9 0.0 4e-35 120.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_S8 PF00410.19 gi|119719158|ref|YP_919653.1| - 1.3e-25 89.8 0.0 1.6e-25 89.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|119719159|ref|YP_919654.1| - 3.2e-14 52.4 3.3 3.8e-14 52.2 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|119719159|ref|YP_919654.1| - 0.15 12.0 5.1 0.3 11.0 5.1 1.5 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Ribosomal_L5_C PF00673.21 gi|119719160|ref|YP_919655.1| - 5.2e-24 84.2 0.1 8.6e-24 83.5 0.1 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|119719160|ref|YP_919655.1| - 6e-18 64.9 0.2 3.3e-17 62.6 0.1 2.2 2 0 0 2 2 2 1 Ribosomal protein L5 DUF5511 PF17630.2 gi|119719160|ref|YP_919655.1| - 0.16 12.2 0.1 0.29 11.4 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5511) Ribosomal_S4e PF00900.20 gi|119719161|ref|YP_919656.1| - 5e-21 74.4 0.1 9.8e-21 73.5 0.1 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|119719161|ref|YP_919656.1| - 5.1e-16 58.5 3.7 7.9e-16 57.9 3.7 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|119719161|ref|YP_919656.1| - 6.9e-08 32.1 0.0 1.6e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|119719161|ref|YP_919656.1| - 0.4 10.7 0.2 0.4 10.7 0.2 2.1 2 0 0 2 2 2 0 KOW motif Ribosomal_L26 PF16906.5 gi|119719162|ref|YP_919657.1| - 2.8e-27 95.0 0.5 3.5e-27 94.7 0.5 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|119719162|ref|YP_919657.1| - 7.7e-08 32.0 5.1 7.7e-08 32.0 5.1 2.0 2 0 0 2 2 2 1 KOW motif eIF-1a PF01176.19 gi|119719162|ref|YP_919657.1| - 0.012 15.4 0.6 0.035 13.9 0.6 1.9 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 IF-2B PF01008.17 gi|119719164|ref|YP_919659.1| - 3.4e-80 269.3 0.1 4e-80 269.1 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF5130 PF17174.4 gi|119719164|ref|YP_919659.1| - 0.069 13.4 0.1 0.25 11.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5130) ADP_ribosyl_GH PF03747.14 gi|119719164|ref|YP_919659.1| - 0.15 11.8 0.1 0.23 11.2 0.1 1.2 1 0 0 1 1 1 0 ADP-ribosylglycohydrolase DUF99 PF01949.16 gi|119719165|ref|YP_919660.1| - 1.2e-62 210.6 0.1 1.3e-62 210.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Peptidase_M24 PF00557.24 gi|119719166|ref|YP_919661.1| - 1e-65 221.4 0.1 1.3e-65 221.0 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|119719166|ref|YP_919661.1| - 2.2e-08 34.8 0.1 4.1e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DcpS_C PF11969.8 gi|119719168|ref|YP_919663.1| - 0.00012 22.5 0.0 0.00058 20.3 0.0 2.1 2 1 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 gi|119719168|ref|YP_919663.1| - 0.00013 22.6 0.0 0.00076 20.2 0.0 2.3 2 0 0 2 2 2 1 HIT domain GalP_UDP_tr_C PF02744.17 gi|119719168|ref|YP_919663.1| - 0.091 12.5 0.1 0.29 10.8 0.1 1.8 1 1 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain NPV_P10 PF05531.12 gi|119719169|ref|YP_919664.1| - 0.11 12.9 0.8 1.8 9.1 0.4 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein ABC_tran_CTD PF16326.5 gi|119719169|ref|YP_919664.1| - 0.22 11.8 2.0 0.83 9.9 1.8 1.9 1 1 1 2 2 2 0 ABC transporter C-terminal domain Shugoshin_N PF07558.11 gi|119719169|ref|YP_919664.1| - 1.4 8.9 5.5 12 5.9 0.4 3.1 3 0 0 3 3 3 0 Shugoshin N-terminal coiled-coil region Robl_LC7 PF03259.17 gi|119719170|ref|YP_919665.1| - 4e-05 23.3 0.0 6.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|119719170|ref|YP_919665.1| - 0.073 12.9 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting DUF3271 PF11675.8 gi|119719170|ref|YP_919665.1| - 0.15 11.3 0.0 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3271) ATP_bind_1 PF03029.17 gi|119719171|ref|YP_919666.1| - 4.2e-11 43.1 0.0 4.3e-07 30.0 0.0 2.2 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|119719171|ref|YP_919666.1| - 1e-07 31.6 0.0 5.5e-07 29.2 0.0 1.9 1 1 0 1 1 1 1 ADP-ribosylation factor family TsaE PF02367.17 gi|119719171|ref|YP_919666.1| - 0.0016 18.4 0.1 0.0023 18.0 0.1 1.2 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Roc PF08477.13 gi|119719171|ref|YP_919666.1| - 0.0019 18.4 0.0 0.0027 17.9 0.0 1.2 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase T2SSE PF00437.20 gi|119719171|ref|YP_919666.1| - 0.0061 15.7 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein MMR_HSR1 PF01926.23 gi|119719171|ref|YP_919666.1| - 0.013 15.6 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|119719171|ref|YP_919666.1| - 0.014 15.3 0.1 0.034 14.1 0.1 1.7 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.6 gi|119719171|ref|YP_919666.1| - 0.025 15.0 0.0 0.025 15.0 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|119719171|ref|YP_919666.1| - 0.039 14.4 0.0 0.28 11.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Septin PF00735.18 gi|119719171|ref|YP_919666.1| - 0.052 12.8 0.0 0.076 12.3 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_28 PF13521.6 gi|119719171|ref|YP_919666.1| - 0.15 12.3 0.1 0.19 12.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|119719171|ref|YP_919666.1| - 0.15 11.8 0.0 0.35 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|119719171|ref|YP_919666.1| - 0.16 12.1 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Robl_LC7 PF03259.17 gi|119719172|ref|YP_919667.1| - 1.5e-11 43.9 0.0 2e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain ACC_epsilon PF13822.6 gi|119719172|ref|YP_919667.1| - 0.07 13.8 0.5 0.11 13.2 0.5 1.2 1 0 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit Aminotran_1_2 PF00155.21 gi|119719173|ref|YP_919668.1| - 1.5e-51 175.7 0.0 1.7e-51 175.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|119719173|ref|YP_919668.1| - 5.9e-09 35.4 0.0 8.6e-09 34.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|119719173|ref|YP_919668.1| - 1.5e-07 31.0 0.0 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|119719173|ref|YP_919668.1| - 2.8e-05 22.9 0.0 4.1e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.7 gi|119719173|ref|YP_919668.1| - 0.00019 20.4 0.0 0.00026 19.9 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Trigger_N PF05697.13 gi|119719173|ref|YP_919668.1| - 0.017 15.5 0.1 0.035 14.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) Beta_elim_lyase PF01212.21 gi|119719173|ref|YP_919668.1| - 0.034 13.4 0.0 0.051 12.9 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Ribosomal_S11 PF00411.19 gi|119719175|ref|YP_919670.1| - 5.4e-42 142.6 0.7 7.4e-42 142.2 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|119719176|ref|YP_919671.1| - 4.3e-16 58.4 0.2 4.3e-16 58.4 0.2 2.0 3 0 0 3 3 3 1 S4 domain Ribosomal_S4 PF00163.19 gi|119719176|ref|YP_919671.1| - 2.7e-05 25.0 0.3 5.1e-05 24.1 0.1 1.6 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain DIOX_N PF14226.6 gi|119719176|ref|YP_919671.1| - 0.17 12.7 0.0 0.23 12.2 0.0 1.3 1 0 0 1 1 1 0 non-haem dioxygenase in morphine synthesis N-terminal Ribosomal_S13 PF00416.22 gi|119719177|ref|YP_919672.1| - 1.9e-38 131.8 0.0 2.2e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.6 gi|119719177|ref|YP_919672.1| - 0.061 13.3 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 Helix-hairpin-helix containing domain HHH PF00633.23 gi|119719177|ref|YP_919672.1| - 0.066 13.1 0.2 0.17 11.8 0.2 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif FbpA PF05833.11 gi|119719177|ref|YP_919672.1| - 0.082 11.7 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DUF5053 PF16476.5 gi|119719177|ref|YP_919672.1| - 0.17 11.5 0.1 0.52 10.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5053) Mis12 PF05859.12 gi|119719180|ref|YP_919675.1| - 0.031 14.3 0.4 0.044 13.8 0.4 1.1 1 0 0 1 1 1 0 Mis12 protein MR_MLE_C PF13378.6 gi|119719181|ref|YP_919676.1| - 9.2e-37 126.7 0.0 1.3e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|119719181|ref|YP_919676.1| - 2.2e-16 60.1 0.0 4.1e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DinI PF06183.13 gi|119719181|ref|YP_919676.1| - 0.002 18.4 0.7 1.7 9.1 0.2 2.5 1 1 1 2 2 2 2 DinI-like family HU-CCDC81_bac_2 PF18175.1 gi|119719181|ref|YP_919676.1| - 0.054 13.4 0.2 0.23 11.3 0.0 2.1 3 0 0 3 3 3 0 CCDC81-like prokaryotic HU domain 2 Cdc6_C PF09079.11 gi|119719183|ref|YP_919678.1| - 1.3e-12 47.5 0.0 2.5e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|119719183|ref|YP_919678.1| - 4.5e-08 33.5 0.0 1e-07 32.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719183|ref|YP_919678.1| - 5.1e-06 27.0 0.9 3e-05 24.5 0.1 2.5 2 1 1 3 3 3 1 AAA ATPase domain NACHT PF05729.12 gi|119719183|ref|YP_919678.1| - 6.5e-05 22.9 0.0 0.00016 21.7 0.0 1.6 1 1 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|119719183|ref|YP_919678.1| - 0.00012 22.5 0.1 0.00034 21.1 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|119719183|ref|YP_919678.1| - 0.00092 18.5 0.1 0.002 17.4 0.1 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain Bac_DnaA PF00308.18 gi|119719183|ref|YP_919678.1| - 0.0044 16.9 0.1 1.9 8.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial dnaA protein AAA_30 PF13604.6 gi|119719183|ref|YP_919678.1| - 0.022 14.5 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|119719183|ref|YP_919678.1| - 0.025 14.3 0.1 0.049 13.4 0.1 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PhoH PF02562.16 gi|119719183|ref|YP_919678.1| - 0.031 13.7 0.3 0.39 10.2 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activat PF00158.26 gi|119719183|ref|YP_919678.1| - 0.082 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.29 gi|119719183|ref|YP_919678.1| - 0.089 12.6 0.1 6.6 6.5 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|119719183|ref|YP_919678.1| - 0.11 11.7 0.1 0.22 10.7 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TsaE PF02367.17 gi|119719183|ref|YP_919678.1| - 0.17 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|119719184|ref|YP_919679.1| - 4.7e-14 53.0 0.0 1.2e-13 51.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|119719184|ref|YP_919679.1| - 1.1e-07 31.3 0.0 5.5e-07 29.0 0.0 2.1 2 1 1 3 3 3 1 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|119719184|ref|YP_919679.1| - 9.3e-07 28.9 0.0 2.2e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|119719184|ref|YP_919679.1| - 1.6e-06 28.0 0.0 3.1e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|119719184|ref|YP_919679.1| - 1.1e-05 25.4 0.1 3e-05 24.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) RFC1 PF08519.12 gi|119719184|ref|YP_919679.1| - 5.2e-05 23.5 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain DNA_pol3_delta PF06144.13 gi|119719184|ref|YP_919679.1| - 5.2e-05 23.1 0.0 8.4e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|119719184|ref|YP_919679.1| - 5.7e-05 23.6 0.1 0.0002 21.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain TIP49 PF06068.13 gi|119719184|ref|YP_919679.1| - 0.00017 20.9 0.0 0.00029 20.2 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_7 PF12775.7 gi|119719184|ref|YP_919679.1| - 0.00037 20.1 0.0 0.0014 18.2 0.0 1.8 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|119719184|ref|YP_919679.1| - 0.00051 20.3 0.3 0.079 13.2 0.1 2.9 2 1 1 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|119719184|ref|YP_919679.1| - 0.00067 19.7 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|119719184|ref|YP_919679.1| - 0.0011 19.3 0.1 0.0036 17.6 0.1 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_2 PF07724.14 gi|119719184|ref|YP_919679.1| - 0.0014 18.8 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.12 gi|119719184|ref|YP_919679.1| - 0.0024 17.2 0.0 0.0048 16.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|119719184|ref|YP_919679.1| - 0.021 15.0 0.0 0.14 12.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|119719184|ref|YP_919679.1| - 0.033 14.5 0.1 0.13 12.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|119719184|ref|YP_919679.1| - 0.037 13.9 0.0 0.14 12.0 0.0 2.0 1 1 0 1 1 1 0 Bacterial dnaA protein AAA_25 PF13481.6 gi|119719184|ref|YP_919679.1| - 0.048 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|119719184|ref|YP_919679.1| - 0.054 12.3 0.0 0.091 11.6 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase AAA_29 PF13555.6 gi|119719184|ref|YP_919679.1| - 0.061 13.1 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|119719184|ref|YP_919679.1| - 0.082 12.8 0.1 12 5.8 0.0 2.7 2 1 1 3 3 3 0 NACHT domain AAA_11 PF13086.6 gi|119719184|ref|YP_919679.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119719184|ref|YP_919679.1| - 0.14 12.7 0.0 0.39 11.2 0.0 1.8 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|119719184|ref|YP_919679.1| - 0.17 12.3 0.0 0.42 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_6 PF12774.7 gi|119719184|ref|YP_919679.1| - 0.18 10.8 0.0 1.2 8.1 0.0 2.1 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Rep_fac_C PF08542.11 gi|119719185|ref|YP_919680.1| - 5.7e-19 68.3 0.4 1.5e-18 67.0 0.1 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|119719185|ref|YP_919680.1| - 5.9e-17 61.9 0.0 1.9e-11 44.0 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.29 gi|119719185|ref|YP_919680.1| - 8.4e-15 55.4 0.0 2.2e-14 54.0 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|119719185|ref|YP_919680.1| - 1.6e-07 31.2 0.0 4.9e-07 29.6 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|119719185|ref|YP_919680.1| - 1.9e-07 31.4 0.3 0.029 14.7 0.0 3.2 2 1 1 3 3 3 2 AAA domain Rad17 PF03215.15 gi|119719185|ref|YP_919680.1| - 4.1e-07 30.1 0.0 2.4e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|119719185|ref|YP_919680.1| - 1e-05 25.6 0.0 0.00026 21.0 0.0 2.3 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|119719185|ref|YP_919680.1| - 1.8e-05 24.8 0.0 0.00014 22.0 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_assoc_2 PF16193.5 gi|119719185|ref|YP_919680.1| - 3.7e-05 24.0 2.0 4.2e-05 23.8 0.1 2.1 3 0 0 3 3 1 1 AAA C-terminal domain AAA_25 PF13481.6 gi|119719185|ref|YP_919680.1| - 5.7e-05 22.8 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719185|ref|YP_919680.1| - 8.6e-05 23.0 0.0 0.013 15.9 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain PhoH PF02562.16 gi|119719185|ref|YP_919680.1| - 0.00036 20.1 0.0 0.088 12.2 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_3 PF07726.11 gi|119719185|ref|YP_919680.1| - 0.00044 20.1 0.0 0.00074 19.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|119719185|ref|YP_919680.1| - 0.00066 19.5 0.0 0.0024 17.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain DNA_pol3_delta PF06144.13 gi|119719185|ref|YP_919680.1| - 0.00099 18.9 0.0 0.012 15.4 0.0 2.5 3 0 0 3 3 3 1 DNA polymerase III, delta subunit AAA_18 PF13238.6 gi|119719185|ref|YP_919680.1| - 0.0014 19.2 0.0 0.0065 17.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|119719185|ref|YP_919680.1| - 0.0022 17.3 0.0 0.004 16.4 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|119719185|ref|YP_919680.1| - 0.0022 17.7 0.0 0.028 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|119719185|ref|YP_919680.1| - 0.0028 17.4 0.1 0.011 15.4 0.0 2.1 2 1 0 2 2 2 1 IstB-like ATP binding protein TniB PF05621.11 gi|119719185|ref|YP_919680.1| - 0.0029 17.1 0.0 0.097 12.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein Mg_chelatase PF01078.21 gi|119719185|ref|YP_919680.1| - 0.0033 16.8 0.0 0.036 13.4 0.0 2.3 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|119719185|ref|YP_919680.1| - 0.0069 16.6 0.0 0.016 15.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|119719185|ref|YP_919680.1| - 0.0073 16.1 0.1 1.6 8.5 0.0 2.3 1 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|119719185|ref|YP_919680.1| - 0.01 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|119719185|ref|YP_919680.1| - 0.011 15.7 0.0 0.05 13.6 0.0 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|119719185|ref|YP_919680.1| - 0.014 14.4 0.0 0.032 13.3 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|119719185|ref|YP_919680.1| - 0.024 14.4 0.2 0.093 12.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|119719185|ref|YP_919680.1| - 0.032 13.6 0.0 0.073 12.4 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|119719185|ref|YP_919680.1| - 0.034 14.4 0.0 0.072 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119719185|ref|YP_919680.1| - 0.035 14.5 0.0 0.12 12.8 0.0 1.9 2 0 0 2 2 1 0 RNA helicase DUF815 PF05673.13 gi|119719185|ref|YP_919680.1| - 0.039 13.1 0.0 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|119719185|ref|YP_919680.1| - 0.058 13.7 0.0 0.63 10.4 0.0 2.2 1 1 1 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|119719185|ref|YP_919680.1| - 0.1 11.8 0.0 0.52 9.5 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|119719185|ref|YP_919680.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TPR_14 PF13428.6 gi|119719185|ref|YP_919680.1| - 0.22 12.5 1.2 1.1 10.3 0.0 2.8 3 1 1 4 4 2 0 Tetratricopeptide repeat Ribosomal_S7 PF00177.21 gi|119719186|ref|YP_919681.1| - 3e-42 143.8 0.4 3.7e-42 143.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e RtcB PF01139.17 gi|119719187|ref|YP_919682.1| - 2.9e-169 563.6 0.0 3.4e-169 563.4 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 gi|119719187|ref|YP_919682.1| - 0.012 15.7 0.2 0.029 14.4 0.0 1.8 2 0 0 2 2 2 0 Complex 1 protein (LYR family) HTH_20 PF12840.7 gi|119719188|ref|YP_919683.1| - 3.6e-06 26.9 0.2 6.1e-06 26.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|119719188|ref|YP_919683.1| - 4.1e-05 23.3 0.0 6.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|119719188|ref|YP_919683.1| - 0.00036 20.4 0.5 0.00069 19.4 0.2 1.6 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|119719188|ref|YP_919683.1| - 0.00045 19.9 1.5 0.27 11.1 0.0 2.8 3 0 0 3 3 3 2 Homeodomain-like domain HTH_24 PF13412.6 gi|119719188|ref|YP_919683.1| - 0.00047 19.7 0.9 0.0012 18.4 0.6 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|119719188|ref|YP_919683.1| - 0.00053 19.7 0.1 0.0015 18.3 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|119719188|ref|YP_919683.1| - 0.00057 19.8 0.6 0.0013 18.6 0.6 1.7 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|119719188|ref|YP_919683.1| - 0.00085 19.1 0.1 0.0027 17.5 0.1 1.9 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|119719188|ref|YP_919683.1| - 0.0037 17.2 0.1 0.013 15.4 0.0 1.9 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|119719188|ref|YP_919683.1| - 0.0038 17.4 0.2 4 7.7 0.0 2.4 2 1 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|119719188|ref|YP_919683.1| - 0.0065 16.5 0.1 0.023 14.7 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|119719188|ref|YP_919683.1| - 0.0087 16.2 0.7 0.68 10.1 0.0 3.0 2 1 0 3 3 3 1 Helix-turn-helix domain DUF3253 PF11625.8 gi|119719188|ref|YP_919683.1| - 0.021 15.0 0.1 0.039 14.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) HTH_7 PF02796.15 gi|119719188|ref|YP_919683.1| - 0.035 14.2 0.3 0.3 11.2 0.1 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain of resolvase FeoC PF09012.10 gi|119719188|ref|YP_919683.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Archease PF01951.16 gi|119719189|ref|YP_919684.1| - 1e-41 142.4 0.0 1.2e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) FMN_dh PF01070.18 gi|119719190|ref|YP_919685.1| - 8.2e-22 77.7 6.3 7.7e-15 54.8 3.3 2.2 1 1 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|119719190|ref|YP_919685.1| - 0.0012 18.1 3.9 0.0021 17.3 0.2 2.4 2 1 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|119719190|ref|YP_919685.1| - 0.0024 17.1 0.1 0.0057 15.9 0.0 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|119719190|ref|YP_919685.1| - 0.017 14.1 5.6 0.029 13.4 0.0 3.4 4 1 1 5 5 5 0 IMP dehydrogenase / GMP reductase domain Memo PF01875.17 gi|119719191|ref|YP_919686.1| - 1.3e-78 263.9 0.0 1.5e-78 263.7 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|119719191|ref|YP_919686.1| - 4.1e-07 29.4 0.1 5.7e-07 28.9 0.1 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|119719192|ref|YP_919687.1| - 4.8e-21 75.0 0.0 5.6e-14 51.9 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_pol_N PF01194.17 gi|119719194|ref|YP_919689.1| - 6.8e-30 103.1 0.2 8.9e-30 102.8 0.2 1.2 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|119719194|ref|YP_919689.1| - 0.086 13.1 0.2 0.16 12.2 0.2 1.5 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Baculo_ME53 PF06061.11 gi|119719194|ref|YP_919689.1| - 0.095 11.9 0.2 0.11 11.7 0.2 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 DUF572 PF04502.13 gi|119719194|ref|YP_919689.1| - 0.11 12.1 0.3 0.13 11.8 0.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF572) Ribosomal_S9 PF00380.19 gi|119719195|ref|YP_919690.1| - 9.1e-32 110.1 0.4 1e-31 110.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 PBCV_basic_adap PF08789.10 gi|119719195|ref|YP_919690.1| - 0.092 12.9 1.9 0.22 11.7 1.9 1.6 1 0 0 1 1 1 0 PBCV-specific basic adaptor domain Ribosomal_L13 PF00572.18 gi|119719196|ref|YP_919691.1| - 2.9e-13 50.1 0.7 3.5e-11 43.5 0.7 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|119719197|ref|YP_919692.1| - 1.9e-06 27.4 0.0 2e-06 27.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|119719197|ref|YP_919692.1| - 0.0039 17.8 0.0 0.016 15.9 0.0 1.9 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF3006 PF11213.8 gi|119719197|ref|YP_919692.1| - 0.078 13.2 0.3 0.25 11.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) RNA_pol_A_bac PF01000.26 gi|119719198|ref|YP_919693.1| - 2.2e-21 76.3 0.0 3.6e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|119719198|ref|YP_919693.1| - 1.1e-16 60.0 0.0 1.3e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosom_S12_S23 PF00164.25 gi|119719199|ref|YP_919694.1| - 3.2e-47 158.9 0.4 4e-47 158.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|119719200|ref|YP_919695.1| - 1.5e-16 59.9 0.4 1.8e-10 40.5 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|119719200|ref|YP_919695.1| - 2.2e-10 40.5 1.5 8e-08 32.3 0.1 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_4 PF13083.6 gi|119719200|ref|YP_919695.1| - 2e-06 27.6 0.1 5e-06 26.3 0.0 1.6 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|119719200|ref|YP_919695.1| - 3.4e-05 23.6 0.4 0.22 11.4 0.1 2.5 1 1 1 2 2 2 2 KH domain PP-binding PF00550.25 gi|119719200|ref|YP_919695.1| - 0.14 12.5 0.0 0.67 10.3 0.0 1.9 2 0 0 2 2 2 0 Phosphopantetheine attachment site Ribosomal_L7Ae PF01248.26 gi|119719201|ref|YP_919696.1| - 4.4e-20 71.2 0.1 4.7e-20 71.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|119719202|ref|YP_919697.1| - 6.6e-56 189.7 0.0 8.1e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FliG_M PF14841.6 gi|119719202|ref|YP_919697.1| - 0.041 14.1 0.1 0.76 10.0 0.0 2.5 2 0 0 2 2 2 0 FliG middle domain PHA_gran_rgn PF09650.10 gi|119719202|ref|YP_919697.1| - 0.053 13.8 0.2 0.32 11.3 0.1 2.4 2 0 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) DUF2087 PF09860.9 gi|119719202|ref|YP_919697.1| - 0.12 12.5 0.0 0.94 9.7 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2087) RNA_pol_Rpb1_1 PF04997.12 gi|119719203|ref|YP_919698.1| - 3.9e-95 318.8 0.0 5.8e-95 318.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|119719203|ref|YP_919698.1| - 6.2e-77 257.5 0.0 9.4e-77 256.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|119719203|ref|YP_919698.1| - 1.1e-37 129.4 0.0 1.7e-37 128.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|119719203|ref|YP_919698.1| - 2.9e-30 104.4 0.0 6.7e-30 103.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|119719203|ref|YP_919698.1| - 3.2e-25 89.1 0.0 7.8e-25 87.8 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.10 gi|119719203|ref|YP_919698.1| - 0.017 15.2 1.3 3 8.0 0.1 2.8 2 1 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|119719203|ref|YP_919698.1| - 0.089 12.8 2.2 6.3 6.9 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|119719203|ref|YP_919698.1| - 0.68 9.4 6.4 0.35 10.3 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain CpXC PF14353.6 gi|119719203|ref|YP_919698.1| - 1.1 9.3 4.4 1.7 8.7 0.0 2.7 2 1 1 3 3 3 0 CpXC protein RNA_pol_Rpb2_6 PF00562.28 gi|119719204|ref|YP_919699.1| - 2.2e-121 405.6 0.0 3e-121 405.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|119719204|ref|YP_919699.1| - 1.4e-53 181.5 0.0 2e-53 181.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|119719204|ref|YP_919699.1| - 7.3e-33 113.8 0.0 1.2e-32 113.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|119719204|ref|YP_919699.1| - 3.3e-30 104.3 0.0 7.4e-30 103.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|119719204|ref|YP_919699.1| - 4e-29 100.6 0.1 1.7e-28 98.6 0.1 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|119719204|ref|YP_919699.1| - 3.1e-23 81.8 0.9 7.1e-23 80.7 0.9 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|119719204|ref|YP_919699.1| - 7.2e-11 42.5 0.8 2.2e-10 40.9 0.8 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|119719204|ref|YP_919699.1| - 0.086 13.1 0.4 0.51 10.6 0.2 2.4 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain YdjO PF14169.6 gi|119719204|ref|YP_919699.1| - 0.19 11.5 1.3 0.37 10.6 1.3 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO RNA_pol_Rpb5_C PF01191.19 gi|119719205|ref|YP_919700.1| - 1.9e-30 104.5 0.0 2.1e-30 104.4 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain PASTA PF03793.19 gi|119719205|ref|YP_919700.1| - 0.0025 17.6 0.2 0.014 15.2 0.2 1.9 1 1 0 1 1 1 1 PASTA domain HGTP_anticodon PF03129.20 gi|119719206|ref|YP_919701.1| - 4.9e-19 68.3 0.1 1e-18 67.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|119719206|ref|YP_919701.1| - 1.1e-09 38.5 0.0 4.1e-09 36.7 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF678 PF05077.12 gi|119719206|ref|YP_919701.1| - 0.0091 16.1 0.2 0.024 14.8 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF678) zinc_ribbon_2 PF13240.6 gi|119719206|ref|YP_919701.1| - 0.014 15.1 1.1 2.9 7.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|119719206|ref|YP_919701.1| - 0.017 15.0 0.6 2.2 8.3 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|119719206|ref|YP_919701.1| - 0.091 12.6 0.0 0.34 10.8 0.0 1.9 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.10 gi|119719206|ref|YP_919701.1| - 0.092 12.9 1.3 1.2 9.3 1.3 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|119719206|ref|YP_919701.1| - 0.25 11.3 1.2 8.7 6.4 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|119719206|ref|YP_919701.1| - 0.69 9.4 3.0 3.5 7.2 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Arcadin_1 PF18653.1 gi|119719207|ref|YP_919702.1| - 7.9e-44 148.2 1.8 8.9e-44 148.1 1.8 1.0 1 0 0 1 1 1 1 Arcadin 1 RNA_pol_Rpb6 PF01192.22 gi|119719208|ref|YP_919703.1| - 7.2e-15 54.6 0.0 9.7e-15 54.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.24 gi|119719209|ref|YP_919704.1| - 9.9e-188 624.7 15.4 1.1e-187 624.5 15.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peptidase_S24 PF00717.23 gi|119719210|ref|YP_919705.1| - 1.4e-08 34.5 0.2 2e-08 34.1 0.2 1.2 1 0 0 1 1 1 1 Peptidase S24-like DUF2512 PF10710.9 gi|119719210|ref|YP_919705.1| - 0.03 14.0 0.3 0.047 13.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) TBP PF00352.21 gi|119719211|ref|YP_919706.1| - 1.9e-48 162.3 1.3 2.7e-33 113.7 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|119719211|ref|YP_919706.1| - 3.8e-06 26.9 0.0 0.0015 18.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Thiamine_BP PF01910.17 gi|119719211|ref|YP_919706.1| - 0.014 15.2 2.0 1.9 8.5 0.1 2.4 2 1 0 2 2 2 0 Thiamine-binding protein CagE_TrbE_VirB PF03135.14 gi|119719211|ref|YP_919706.1| - 0.015 15.4 0.6 4.5 7.3 0.0 2.1 2 0 0 2 2 2 0 CagE, TrbE, VirB family, component of type IV transporter system RTT107_BRCT_5 PF16770.5 gi|119719211|ref|YP_919706.1| - 0.022 14.6 0.4 0.64 9.9 0.1 2.1 2 0 0 2 2 2 0 Regulator of Ty1 transposition protein 107 BRCT domain Ribosomal_S10 PF00338.22 gi|119719211|ref|YP_919706.1| - 0.044 14.0 0.2 2.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S10p/S20e DUF155 PF02582.14 gi|119719211|ref|YP_919706.1| - 0.071 13.2 0.2 8 6.5 0.0 2.4 2 1 0 2 2 2 0 Uncharacterised ACR, YagE family COG1723 Histone_HNS PF00816.21 gi|119719211|ref|YP_919706.1| - 0.071 13.9 1.9 3.8 8.4 0.1 2.2 2 0 0 2 2 2 0 H-NS histone family Methyltransf_11 PF08241.12 gi|119719211|ref|YP_919706.1| - 0.12 13.0 0.1 6.1 7.6 0.0 2.7 1 1 1 2 2 2 0 Methyltransferase domain Acetyltransf_1 PF00583.25 gi|119719212|ref|YP_919707.1| - 8e-21 74.5 0.5 9.5e-21 74.2 0.5 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|119719212|ref|YP_919707.1| - 1.6e-13 50.8 0.7 2.8e-13 50.1 0.5 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|119719212|ref|YP_919707.1| - 6e-13 48.8 0.2 1.4e-12 47.6 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119719212|ref|YP_919707.1| - 3.1e-08 33.5 0.0 4.8e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|119719212|ref|YP_919707.1| - 1e-06 29.0 0.3 1.8e-06 28.1 0.3 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|119719212|ref|YP_919707.1| - 2.2e-05 24.2 0.0 3.4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|119719212|ref|YP_919707.1| - 4.1e-05 24.3 0.1 5e-05 24.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|119719212|ref|YP_919707.1| - 0.0026 17.8 0.4 0.0042 17.2 0.4 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|119719212|ref|YP_919707.1| - 0.0033 16.9 1.8 0.0044 16.5 1.8 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase ANF_receptor PF01094.28 gi|119719213|ref|YP_919708.1| - 3.1e-45 154.8 0.0 3.7e-45 154.6 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|119719213|ref|YP_919708.1| - 2.5e-42 145.8 2.4 3e-42 145.5 2.4 1.0 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.13 gi|119719213|ref|YP_919708.1| - 1.6e-08 33.8 0.1 2.2e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|119719213|ref|YP_919708.1| - 0.014 14.4 0.0 1.9 7.4 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein domain Peripla_BP_3 PF13377.6 gi|119719213|ref|YP_919708.1| - 0.14 12.5 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding protein-like domain Ribosomal_L40e PF01020.17 gi|119719214|ref|YP_919709.1| - 3.2e-06 26.9 7.4 3.4e-06 26.8 7.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family TackOD1 PF18551.1 gi|119719214|ref|YP_919709.1| - 0.0037 17.0 0.8 0.0039 16.9 0.8 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|119719214|ref|YP_919709.1| - 0.0067 16.4 0.6 0.0072 16.3 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|119719214|ref|YP_919709.1| - 0.045 13.7 5.8 1.6 8.7 0.7 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DNA_pol_B PF00136.21 gi|119719216|ref|YP_919711.1| - 3e-56 191.1 0.8 5.9e-56 190.1 0.8 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|119719216|ref|YP_919711.1| - 2.7e-33 115.5 0.0 7.1e-33 114.2 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|119719216|ref|YP_919711.1| - 3.9e-06 27.0 0.0 1e-05 25.6 0.0 1.8 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|119719216|ref|YP_919711.1| - 4.7e-06 26.4 0.0 1.1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|119719216|ref|YP_919711.1| - 0.0022 17.0 0.1 1.8 7.3 0.0 2.3 2 0 0 2 2 2 2 DNA polymerase type B, organellar and viral DUF371 PF04027.13 gi|119719219|ref|YP_919714.1| - 1.6e-21 76.7 0.0 2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) THF_DHG_CYH PF00763.23 gi|119719219|ref|YP_919714.1| - 0.093 13.0 0.1 0.33 11.2 0.1 1.8 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XPG_I PF00867.18 gi|119719220|ref|YP_919715.1| - 3.1e-26 91.6 0.0 5.7e-26 90.7 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|119719220|ref|YP_919715.1| - 7.4e-23 80.9 0.0 1.5e-22 79.9 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|119719220|ref|YP_919715.1| - 0.024 15.2 1.1 0.067 13.8 0.0 2.4 3 1 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold AMP-binding_C_2 PF14535.6 gi|119719220|ref|YP_919715.1| - 0.056 13.8 3.3 0.27 11.6 0.1 2.8 3 0 0 3 3 3 0 AMP-binding enzyme C-terminal domain AAA PF00004.29 gi|119719222|ref|YP_919717.1| - 1.9e-100 332.5 0.0 2.6e-49 167.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|119719222|ref|YP_919717.1| - 5.3e-37 125.4 3.9 1.8e-17 62.8 0.3 2.9 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|119719222|ref|YP_919717.1| - 8.6e-36 122.0 1.8 7e-35 119.1 1.1 2.9 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|119719222|ref|YP_919717.1| - 1.4e-16 60.6 0.0 9.7e-08 31.9 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|119719222|ref|YP_919717.1| - 3.7e-16 58.7 2.6 8e-16 57.6 1.8 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|119719222|ref|YP_919717.1| - 4.5e-15 56.5 0.0 1.9e-06 28.4 0.0 3.3 2 1 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|119719222|ref|YP_919717.1| - 4e-14 53.1 0.0 6.2e-08 32.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|119719222|ref|YP_919717.1| - 1.1e-12 47.9 2.0 1.8e-06 27.4 0.0 3.4 4 0 0 4 4 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|119719222|ref|YP_919717.1| - 1.9e-12 47.6 1.3 0.0028 17.9 0.0 4.5 3 2 2 5 5 4 2 AAA domain AAA_5 PF07728.14 gi|119719222|ref|YP_919717.1| - 2e-11 44.1 0.7 0.00035 20.6 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|119719222|ref|YP_919717.1| - 6.6e-10 39.3 0.0 0.00032 20.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|119719222|ref|YP_919717.1| - 8e-10 38.9 0.0 0.0002 21.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|119719222|ref|YP_919717.1| - 4.1e-08 33.8 0.1 0.011 16.3 0.0 3.1 3 0 0 3 3 2 2 AAA domain UFD1 PF03152.14 gi|119719222|ref|YP_919717.1| - 4.9e-08 32.6 0.1 8.9e-07 28.5 0.0 2.2 2 0 0 2 2 2 1 Ubiquitin fusion degradation protein UFD1 RNA_helicase PF00910.22 gi|119719222|ref|YP_919717.1| - 8e-08 32.6 0.0 0.007 16.8 0.0 2.8 2 0 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.17 gi|119719222|ref|YP_919717.1| - 9.9e-08 31.9 0.0 0.017 14.8 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|119719222|ref|YP_919717.1| - 1.6e-07 31.2 0.0 0.014 15.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|119719222|ref|YP_919717.1| - 2.3e-07 30.6 2.0 0.97 9.0 0.0 4.4 4 0 0 4 4 4 2 AAA domain AAA_28 PF13521.6 gi|119719222|ref|YP_919717.1| - 4.5e-07 30.3 0.0 0.045 14.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|119719222|ref|YP_919717.1| - 5.4e-07 29.2 0.5 0.034 13.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|119719222|ref|YP_919717.1| - 8.6e-07 28.4 0.3 0.12 11.6 0.0 3.5 3 0 0 3 3 3 2 Zeta toxin Sigma54_activat PF00158.26 gi|119719222|ref|YP_919717.1| - 1.1e-06 28.4 0.1 0.083 12.6 0.0 3.6 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|119719222|ref|YP_919717.1| - 1.3e-05 24.8 0.0 0.15 11.5 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|119719222|ref|YP_919717.1| - 1.6e-05 24.2 0.0 0.11 11.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|119719222|ref|YP_919717.1| - 2.3e-05 24.4 0.3 0.12 12.3 0.0 3.4 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|119719222|ref|YP_919717.1| - 2.7e-05 23.4 0.1 0.11 11.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|119719222|ref|YP_919717.1| - 2.9e-05 24.1 0.0 0.4 10.7 0.0 2.6 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vps4_C PF09336.10 gi|119719222|ref|YP_919717.1| - 2.9e-05 24.0 0.3 0.033 14.2 0.0 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_3 PF07726.11 gi|119719222|ref|YP_919717.1| - 4.7e-05 23.3 0.0 0.4 10.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|119719222|ref|YP_919717.1| - 6.5e-05 23.5 0.0 0.56 10.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.16 gi|119719222|ref|YP_919717.1| - 0.00011 21.7 0.1 0.42 10.0 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein ATPase PF06745.13 gi|119719222|ref|YP_919717.1| - 0.00024 20.5 4.3 0.4 10.0 0.0 3.7 3 2 0 4 4 3 2 KaiC DUF2075 PF09848.9 gi|119719222|ref|YP_919717.1| - 0.00035 19.9 0.0 0.58 9.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|119719222|ref|YP_919717.1| - 0.00039 20.3 0.0 1 9.1 0.0 3.2 2 2 1 3 3 3 1 Bacterial dnaA protein NACHT PF05729.12 gi|119719222|ref|YP_919717.1| - 0.00044 20.2 0.2 1.4 8.8 0.0 2.8 3 0 0 3 3 2 2 NACHT domain NTPase_1 PF03266.15 gi|119719222|ref|YP_919717.1| - 0.0005 20.0 8.7 4 7.3 0.0 6.1 4 2 1 6 6 6 0 NTPase NB-ARC PF00931.22 gi|119719222|ref|YP_919717.1| - 0.00065 19.0 0.0 0.87 8.7 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_19 PF13245.6 gi|119719222|ref|YP_919717.1| - 0.00095 19.5 0.5 3.3 8.0 0.0 3.2 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|119719222|ref|YP_919717.1| - 0.0012 18.6 0.0 2.1 8.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|119719222|ref|YP_919717.1| - 0.0022 17.8 0.0 2.8 7.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|119719222|ref|YP_919717.1| - 0.0023 18.4 0.0 4 7.9 0.0 3.2 3 0 0 3 3 2 0 AAA domain Molydop_binding PF01568.21 gi|119719222|ref|YP_919717.1| - 0.0048 16.9 0.6 0.03 14.4 0.2 2.3 1 1 1 2 2 2 1 Molydopterin dinucleotide binding domain Sigma54_activ_2 PF14532.6 gi|119719222|ref|YP_919717.1| - 0.0059 16.7 0.0 5.6 7.1 0.0 2.8 2 1 1 3 3 2 0 Sigma-54 interaction domain IPT PF01745.16 gi|119719222|ref|YP_919717.1| - 0.0087 15.5 0.2 5 6.4 0.0 2.6 3 0 0 3 3 2 0 Isopentenyl transferase Guanylate_kin PF00625.21 gi|119719222|ref|YP_919717.1| - 0.031 14.0 0.1 41 3.8 0.0 3.6 2 2 2 4 4 4 0 Guanylate kinase T2SSE PF00437.20 gi|119719222|ref|YP_919717.1| - 0.031 13.3 0.0 7.4 5.5 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Viral_helicase1 PF01443.18 gi|119719222|ref|YP_919717.1| - 0.036 13.8 0.0 1 9.0 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AFG1_ATPase PF03969.16 gi|119719222|ref|YP_919717.1| - 0.048 12.6 0.0 5.3 5.8 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase CPT PF07931.12 gi|119719222|ref|YP_919717.1| - 0.049 13.5 0.0 9.1 6.1 0.0 2.7 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein Cytidylate_kin PF02224.18 gi|119719222|ref|YP_919717.1| - 0.057 13.1 0.1 13 5.5 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase AAA_29 PF13555.6 gi|119719222|ref|YP_919717.1| - 0.079 12.7 0.0 17 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|119719222|ref|YP_919717.1| - 0.087 12.6 0.0 10 5.9 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DAP3 PF10236.9 gi|119719222|ref|YP_919717.1| - 0.11 11.6 0.0 8 5.5 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 cobW PF02492.19 gi|119719222|ref|YP_919717.1| - 0.12 12.0 0.1 10 5.6 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FKBP_C PF00254.28 gi|119719223|ref|YP_919718.1| - 3.8e-08 33.5 0.2 1e-07 32.1 0.2 2.0 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|119719223|ref|YP_919718.1| - 4.5e-07 29.9 0.1 1.2e-06 28.5 0.1 1.8 2 0 0 2 2 2 1 FKBP26_C-terminal Proteasome PF00227.26 gi|119719224|ref|YP_919719.1| - 1.2e-55 187.9 0.1 1.4e-55 187.8 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Spindle_Spc25 PF08234.12 gi|119719225|ref|YP_919720.1| - 0.1 12.8 0.2 0.19 12.0 0.1 1.5 2 0 0 2 2 2 0 Chromosome segregation protein Spc25 KH_7 PF17214.3 gi|119719226|ref|YP_919721.1| - 5.8e-23 80.6 2.7 2.6e-22 78.5 1.6 2.5 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|119719226|ref|YP_919721.1| - 7.8e-20 71.2 0.0 2e-19 69.9 0.0 1.8 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|119719226|ref|YP_919721.1| - 1.9e-16 59.7 0.0 8.2e-16 57.7 0.0 2.2 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|119719226|ref|YP_919721.1| - 4.9e-15 55.5 0.0 8.1e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119719226|ref|YP_919721.1| - 1.6e-13 51.1 0.4 8.6e-13 48.7 0.4 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119719226|ref|YP_919721.1| - 2.8e-10 40.0 0.0 5.3e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119719226|ref|YP_919721.1| - 0.0035 17.2 0.0 0.012 15.5 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|119719226|ref|YP_919721.1| - 0.024 14.5 2.1 0.032 14.1 0.4 2.1 2 0 0 2 2 2 0 KH domain PUA PF01472.20 gi|119719227|ref|YP_919722.1| - 1.1e-19 70.1 0.4 1.8e-19 69.5 0.4 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|119719227|ref|YP_919722.1| - 0.00014 22.1 0.1 0.00025 21.2 0.1 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain DUF1947 PF09183.10 gi|119719227|ref|YP_919722.1| - 0.0011 19.2 0.0 0.0031 17.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|119719227|ref|YP_919722.1| - 0.0017 19.0 0.0 0.0031 18.2 0.0 1.4 1 0 0 1 1 1 1 Pre-PUA-like domain tRNA_int_endo_N PF02778.14 gi|119719228|ref|YP_919723.1| - 3.7e-17 61.7 0.4 6.5e-17 61.0 0.4 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_endo PF01974.17 gi|119719228|ref|YP_919723.1| - 2.8e-12 46.5 0.0 6.4e-12 45.4 0.0 1.6 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain Sen15 PF09631.10 gi|119719228|ref|YP_919723.1| - 0.011 16.0 0.0 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 Sen15 protein MoCF_biosynth PF00994.24 gi|119719229|ref|YP_919724.1| - 5.5e-30 103.9 0.0 6.4e-30 103.7 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Uma2 PF05685.12 gi|119719229|ref|YP_919724.1| - 0.084 12.4 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Putative restriction endonuclease GGDEF_2 PF17853.1 gi|119719229|ref|YP_919724.1| - 0.1 12.8 0.1 2.4 8.5 0.1 2.4 1 1 0 1 1 1 0 GGDEF-like domain DUF3487 PF11990.8 gi|119719229|ref|YP_919724.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) MoaC PF01967.21 gi|119719230|ref|YP_919725.1| - 3.7e-52 176.0 2.2 4.6e-52 175.7 2.2 1.0 1 0 0 1 1 1 1 MoaC family DUF5321 PF17254.2 gi|119719230|ref|YP_919725.1| - 0.013 14.9 0.4 0.023 14.1 0.4 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5321) MoaE PF02391.17 gi|119719231|ref|YP_919726.1| - 4.9e-21 75.1 0.3 5.7e-21 74.9 0.3 1.0 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|119719232|ref|YP_919727.1| - 3.8e-10 40.3 0.1 4.3e-10 40.1 0.1 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|119719232|ref|YP_919727.1| - 0.027 14.3 0.0 0.043 13.7 0.0 1.3 1 1 0 1 1 1 0 Mut7-C ubiquitin ddrB-ParB PF18763.1 gi|119719232|ref|YP_919727.1| - 0.074 13.2 0.0 0.087 12.9 0.0 1.1 1 0 0 1 1 1 0 ddrB-like ParB superfamily domain Peptidase_M20 PF01546.28 gi|119719233|ref|YP_919728.1| - 1.5e-29 103.2 0.1 2.1e-29 102.7 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|119719233|ref|YP_919728.1| - 1.4e-19 70.0 0.0 1.5e-18 66.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|119719233|ref|YP_919728.1| - 0.00014 21.6 0.0 0.0018 18.0 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 EKR PF10371.9 gi|119719233|ref|YP_919728.1| - 0.019 14.8 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function Pribosyltran_N PF13793.6 gi|119719234|ref|YP_919729.1| - 7.6e-22 77.4 0.1 1.8e-18 66.6 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|119719234|ref|YP_919729.1| - 1.1e-13 51.1 1.5 1.7e-13 50.4 1.1 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|119719234|ref|YP_919729.1| - 5.3e-10 39.6 1.7 3.2e-09 37.1 0.7 2.1 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.6 gi|119719234|ref|YP_919729.1| - 0.012 15.1 0.1 0.02 14.4 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase UPRTase PF14681.6 gi|119719234|ref|YP_919729.1| - 0.088 12.2 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Sua5_yciO_yrdC PF01300.18 gi|119719235|ref|YP_919730.1| - 7.9e-49 165.6 0.0 1.2e-48 165.0 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|119719235|ref|YP_919730.1| - 6.2e-32 109.1 9.5 1.4e-16 59.9 1.5 2.5 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|119719235|ref|YP_919730.1| - 4.5e-24 85.1 0.1 7.7e-24 84.3 0.1 1.3 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|119719235|ref|YP_919730.1| - 2.5e-22 79.0 0.0 4.7e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|119719235|ref|YP_919730.1| - 0.02 14.6 0.0 4 7.1 0.1 2.3 2 0 0 2 2 2 0 Glycoprotease family TniQ PF06527.11 gi|119719235|ref|YP_919730.1| - 0.086 13.6 0.3 6 7.6 0.1 2.4 1 1 1 2 2 2 0 TniQ NMD3 PF04981.13 gi|119719235|ref|YP_919730.1| - 0.33 10.4 0.7 18 4.7 0.8 2.2 1 1 1 2 2 2 0 NMD3 family Zn-ribbon_8 PF09723.10 gi|119719235|ref|YP_919730.1| - 1.7 8.8 3.7 9.1 6.5 1.2 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Peptidase_M28 PF04389.17 gi|119719236|ref|YP_919731.1| - 1e-33 116.8 0.0 1.3e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 gi|119719236|ref|YP_919731.1| - 2.6e-07 30.5 0.3 1.1e-06 28.5 0.3 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|119719236|ref|YP_919731.1| - 0.0087 15.1 0.0 0.043 12.8 0.0 1.9 1 1 1 2 2 2 1 M42 glutamyl aminopeptidase ThiI PF02568.14 gi|119719237|ref|YP_919732.1| - 2.2e-59 200.4 0.0 3.4e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|119719237|ref|YP_919732.1| - 6.7e-21 74.9 0.0 1.6e-20 73.6 0.0 1.7 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.20 gi|119719237|ref|YP_919732.1| - 1.2e-16 61.2 0.0 7.6e-16 58.6 0.0 2.2 2 0 0 2 2 2 1 Rhodanese-like domain QueC PF06508.13 gi|119719237|ref|YP_919732.1| - 7.7e-07 28.8 0.0 0.0038 16.8 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|119719237|ref|YP_919732.1| - 0.0033 17.0 0.1 0.0063 16.0 0.1 1.5 1 0 0 1 1 1 1 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|119719237|ref|YP_919732.1| - 0.0066 15.3 0.1 0.011 14.5 0.1 1.3 1 0 0 1 1 1 1 tRNA methyl transferase OCC1 PF15506.6 gi|119719237|ref|YP_919732.1| - 0.14 12.3 1.7 0.61 10.2 0.0 2.3 2 0 0 2 2 2 0 OCC1 family ATP_bind_3 PF01171.20 gi|119719237|ref|YP_919732.1| - 0.23 11.2 0.1 3.4 7.4 0.0 2.2 2 0 0 2 2 2 0 PP-loop family Ribosomal_L35Ae PF01247.18 gi|119719238|ref|YP_919733.1| - 3.2e-15 56.0 0.4 4.3e-15 55.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 gi|119719238|ref|YP_919733.1| - 0.0031 17.7 0.1 0.5 10.6 0.1 2.1 2 0 0 2 2 2 2 RimM N-terminal domain SCP2_2 PF13530.6 gi|119719240|ref|YP_919735.1| - 0.064 13.7 0.2 0.082 13.3 0.2 1.3 1 1 0 1 1 1 0 Sterol carrier protein domain ASCH PF04266.14 gi|119719241|ref|YP_919736.1| - 1e-15 58.2 0.0 1.9e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 ASCH domain pP_pnuc_1 PF18165.1 gi|119719241|ref|YP_919736.1| - 0.039 13.8 0.0 0.29 11.0 0.0 2.2 3 0 0 3 3 3 0 Predicted pPIWI-associating nuclease HTH_50 PF18024.1 gi|119719241|ref|YP_919736.1| - 0.14 11.8 2.1 0.32 10.6 0.0 2.7 4 0 0 4 4 4 0 Helix-turn-helix domain tRNA-synt_1 PF00133.22 gi|119719242|ref|YP_919737.1| - 5.1e-149 497.3 0.0 1.2e-147 492.8 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|119719242|ref|YP_919737.1| - 8.2e-34 116.8 0.1 1.6e-33 115.9 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|119719242|ref|YP_919737.1| - 8.7e-21 74.1 0.3 4.4e-14 52.0 0.0 3.4 4 0 0 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|119719242|ref|YP_919737.1| - 1.2e-09 37.9 0.1 3e-08 33.4 0.1 2.4 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|119719242|ref|YP_919737.1| - 1.5e-05 24.5 0.0 0.013 14.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|119719242|ref|YP_919737.1| - 0.00037 20.4 1.5 0.018 15.1 0.2 3.0 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1f PF01921.18 gi|119719242|ref|YP_919737.1| - 0.011 14.7 0.0 3.1 6.6 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) Lar_restr_allev PF14354.6 gi|119719242|ref|YP_919737.1| - 0.013 15.8 0.1 18 5.8 0.1 3.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|119719242|ref|YP_919737.1| - 0.017 15.2 1.2 0.017 15.2 1.2 2.8 3 0 0 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|119719242|ref|YP_919737.1| - 0.019 14.9 0.1 0.48 10.5 0.0 2.9 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|119719242|ref|YP_919737.1| - 0.26 10.8 5.9 0.8 9.3 0.3 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|119719242|ref|YP_919737.1| - 0.85 9.0 3.9 57 3.1 0.2 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-ISL3 PF14690.6 gi|119719242|ref|YP_919737.1| - 1.2 9.8 3.5 15 6.3 0.0 3.5 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|119719242|ref|YP_919737.1| - 3 7.7 11.7 3.9 7.3 0.9 3.7 4 0 0 4 4 4 0 zinc-ribbon domain Thioredoxin_3 PF13192.6 gi|119719243|ref|YP_919738.1| - 8.8e-26 89.8 0.0 3.4e-18 65.4 0.0 2.5 3 0 0 3 3 3 2 Thioredoxin domain Glutaredoxin PF00462.24 gi|119719243|ref|YP_919738.1| - 9.6e-08 32.1 0.1 0.00024 21.2 0.0 3.0 3 0 0 3 3 3 2 Glutaredoxin Thioredoxin PF00085.20 gi|119719243|ref|YP_919738.1| - 5.2e-05 23.2 0.0 0.0088 16.0 0.0 2.3 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_9 PF14595.6 gi|119719243|ref|YP_919738.1| - 0.00061 19.6 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|119719243|ref|YP_919738.1| - 0.0071 16.8 2.3 17 5.9 0.0 3.3 2 1 0 2 2 2 1 Thioredoxin-like domain ABC_transp_aux PF09822.9 gi|119719243|ref|YP_919738.1| - 0.014 14.9 0.0 0.34 10.3 0.0 2.3 2 1 0 2 2 2 0 ABC-type uncharacterized transport system TraF PF13728.6 gi|119719243|ref|YP_919738.1| - 0.024 14.4 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 F plasmid transfer operon protein Rib_5-P_isom_A PF06026.14 gi|119719244|ref|YP_919739.1| - 1.7e-45 154.7 0.0 2.1e-45 154.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|119719244|ref|YP_919739.1| - 8.2e-06 25.8 0.1 5.1e-05 23.3 0.0 2.0 1 1 1 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|119719244|ref|YP_919739.1| - 0.038 13.1 0.1 0.086 11.9 0.0 1.5 2 0 0 2 2 2 0 Putative sugar-binding domain RNA_Me_trans PF04252.13 gi|119719246|ref|YP_919741.1| - 1e-33 116.6 0.0 1.2e-33 116.4 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase PaaX_C PF08223.11 gi|119719246|ref|YP_919741.1| - 0.052 13.8 0.0 0.092 13.0 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein C-terminal domain PK PF00224.21 gi|119719247|ref|YP_919742.1| - 2.9e-88 296.1 0.0 3.8e-88 295.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|119719247|ref|YP_919742.1| - 1.5e-21 76.8 0.0 3.7e-21 75.5 0.0 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|119719247|ref|YP_919742.1| - 0.00027 20.1 0.1 0.0008 18.6 0.0 1.7 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DNA_meth_N PF18284.1 gi|119719247|ref|YP_919742.1| - 0.035 14.0 0.0 0.11 12.4 0.0 1.9 1 0 0 1 1 1 0 DNA methylase N-terminal domain DEAD PF00270.29 gi|119719248|ref|YP_919743.1| - 3.5e-19 69.2 0.1 1.1e-18 67.6 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119719248|ref|YP_919743.1| - 8.1e-13 48.7 0.0 2.5e-12 47.1 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119719248|ref|YP_919743.1| - 0.013 15.5 0.3 0.028 14.4 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|119719248|ref|YP_919743.1| - 0.019 14.7 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119719248|ref|YP_919743.1| - 0.1 12.9 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain SNARE_assoc PF09335.11 gi|119719249|ref|YP_919744.1| - 5.6e-12 46.2 8.2 5.6e-12 46.2 8.2 2.4 2 1 1 3 3 3 1 SNARE associated Golgi protein adh_short PF00106.25 gi|119719249|ref|YP_919744.1| - 0.056 12.9 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase Metallophos PF00149.28 gi|119719251|ref|YP_919746.1| - 4.6e-27 95.8 0.0 5.8e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|119719251|ref|YP_919746.1| - 0.003 17.8 0.0 0.0051 17.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain STPPase_N PF16891.5 gi|119719251|ref|YP_919746.1| - 0.059 13.8 0.1 0.13 12.7 0.1 1.6 1 0 0 1 1 1 0 Serine-threonine protein phosphatase N-terminal domain Peptidase_S26 PF10502.9 gi|119719251|ref|YP_919746.1| - 0.067 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Signal peptidase, peptidase S26 NRDD PF13597.6 gi|119719252|ref|YP_919747.1| - 8e-150 500.3 0.0 9.4e-150 500.1 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase TackOD1 PF18551.1 gi|119719252|ref|YP_919747.1| - 0.0087 15.7 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|119719252|ref|YP_919747.1| - 0.019 15.0 0.1 0.038 14.0 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|119719252|ref|YP_919747.1| - 0.28 10.9 3.3 0.57 10.0 3.3 1.5 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|119719252|ref|YP_919747.1| - 0.6 10.0 5.6 2.1 8.3 5.6 2.0 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|119719252|ref|YP_919747.1| - 2.2 8.5 4.0 60 3.9 4.8 2.5 1 1 1 2 2 2 0 Zinc ribbon domain Succ_CoA_lig PF13607.6 gi|119719253|ref|YP_919748.1| - 2.9e-59 198.8 2.1 7.9e-57 190.9 0.3 2.7 3 0 0 3 3 3 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|119719253|ref|YP_919748.1| - 3.1e-25 88.9 0.1 1.1e-24 87.2 0.2 1.9 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|119719253|ref|YP_919748.1| - 3.3e-11 43.7 0.2 7.4e-11 42.6 0.2 1.7 1 0 0 1 1 1 1 CoA binding domain V_ATPase_I PF01496.19 gi|119719254|ref|YP_919749.1| - 1.6e-21 76.0 5.6 1.1e-13 50.1 0.0 3.3 4 1 0 4 4 4 2 V-type ATPase 116kDa subunit family ATP-synt_C PF00137.21 gi|119719255|ref|YP_919750.1| - 1.8e-09 37.8 12.9 1.8e-09 37.8 12.9 2.1 2 0 0 2 2 2 1 ATP synthase subunit C Lipoprotein_2 PF00921.17 gi|119719255|ref|YP_919750.1| - 0.083 12.4 3.5 0.098 12.2 3.5 1.1 1 0 0 1 1 1 0 Borrelia lipoprotein vATP-synt_AC39 PF01992.16 gi|119719256|ref|YP_919751.1| - 2.6e-06 27.2 1.5 0.0092 15.5 2.4 2.5 1 1 0 2 2 2 2 ATP synthase (C/AC39) subunit ATP-synt_D PF01813.17 gi|119719257|ref|YP_919752.1| - 5.5e-31 107.9 5.1 6.6e-31 107.7 5.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF87 PF01935.17 gi|119719257|ref|YP_919752.1| - 0.026 14.6 0.5 2.2 8.3 0.1 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain Guanylate_cyc_2 PF09778.9 gi|119719257|ref|YP_919752.1| - 0.078 12.3 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Guanylylate cyclase ATP-synt_ab PF00006.25 gi|119719258|ref|YP_919753.1| - 1.9e-66 223.8 0.0 3.3e-66 223.0 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|119719258|ref|YP_919753.1| - 2.2e-05 24.9 0.8 5.5e-05 23.6 0.8 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain ATP-synt_ab PF00006.25 gi|119719259|ref|YP_919754.1| - 1.1e-84 283.3 0.0 1.6e-84 282.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|119719259|ref|YP_919754.1| - 1.3e-47 160.6 0.2 6.8e-47 158.3 0.3 2.1 2 0 0 2 2 2 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|119719259|ref|YP_919754.1| - 4.2e-13 49.6 5.2 9.6e-12 45.3 1.6 2.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|119719259|ref|YP_919754.1| - 0.00063 19.7 1.3 0.0012 18.8 0.2 2.0 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.22 gi|119719259|ref|YP_919754.1| - 0.0064 16.7 0.3 1.4 9.2 0.0 2.7 2 0 0 2 2 2 1 Peptidase family M23 Biotin_lipoyl PF00364.22 gi|119719259|ref|YP_919754.1| - 0.2 11.5 3.8 0.76 9.7 3.5 2.3 1 1 0 1 1 1 0 Biotin-requiring enzyme Transglut_core PF01841.19 gi|119719260|ref|YP_919755.1| - 1.3e-07 32.0 0.0 2.1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.12 gi|119719260|ref|YP_919755.1| - 0.00035 20.1 0.0 0.00096 18.7 0.0 1.7 1 1 1 2 2 2 1 Transglutaminase-like domain zf-ribbon_3 PF13248.6 gi|119719261|ref|YP_919756.1| - 0.0006 19.1 2.3 0.0012 18.1 2.3 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|119719261|ref|YP_919756.1| - 0.0039 17.1 0.2 0.0058 16.5 0.2 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|119719261|ref|YP_919756.1| - 0.0085 15.6 0.7 0.015 14.8 0.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|119719261|ref|YP_919756.1| - 0.014 15.4 0.3 0.023 14.7 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon YacG PF03884.14 gi|119719261|ref|YP_919756.1| - 0.029 14.1 0.5 0.053 13.3 0.5 1.4 1 0 0 1 1 1 0 DNA gyrase inhibitor YacG zinc_ribbon_2 PF13240.6 gi|119719261|ref|YP_919756.1| - 0.03 14.1 4.6 0.29 10.9 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|119719261|ref|YP_919756.1| - 0.031 14.2 7.4 0.68 9.9 1.8 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.14 gi|119719261|ref|YP_919756.1| - 0.031 14.1 4.0 0.08 12.8 0.3 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-CHCC PF10276.9 gi|119719261|ref|YP_919756.1| - 0.04 14.0 1.1 0.78 9.8 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger domain zf-RING_7 PF02591.15 gi|119719261|ref|YP_919756.1| - 0.042 14.0 2.7 2.4 8.4 0.4 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF2256 PF10013.9 gi|119719261|ref|YP_919756.1| - 0.07 13.3 1.6 1.1 9.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) UPF0547 PF10571.9 gi|119719261|ref|YP_919756.1| - 0.18 11.9 5.0 2.1 8.5 5.0 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.6 gi|119719261|ref|YP_919756.1| - 0.61 10.0 3.1 18 5.3 0.6 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.12 gi|119719261|ref|YP_919756.1| - 1.1 9.6 4.9 8.7 6.7 0.5 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF3149 PF11346.8 gi|119719261|ref|YP_919756.1| - 1.8 8.3 5.6 0.77 9.4 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3149) Zn_Tnp_IS1595 PF12760.7 gi|119719261|ref|YP_919756.1| - 6.3 6.9 6.5 15 5.7 0.8 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Peptidase_M48 PF01435.18 gi|119719263|ref|YP_919758.1| - 2.9e-09 37.0 0.0 5.7e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|119719263|ref|YP_919758.1| - 0.00012 21.4 0.0 0.0002 20.6 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|119719263|ref|YP_919758.1| - 0.09 12.6 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 SprT-like family HicA_toxin PF07927.12 gi|119719263|ref|YP_919758.1| - 0.1 12.7 0.0 0.41 10.7 0.0 2.0 2 0 0 2 2 2 0 HicA toxin of bacterial toxin-antitoxin, CarboxypepD_reg PF13620.6 gi|119719264|ref|YP_919759.1| - 3.2e-15 56.2 12.0 6.7e-11 42.3 1.8 4.4 4 1 0 4 4 4 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|119719264|ref|YP_919759.1| - 7.1e-06 25.9 8.6 0.0006 19.8 1.2 3.4 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|119719264|ref|YP_919759.1| - 1.2e-05 25.4 0.8 0.0021 18.1 0.1 3.3 3 0 0 3 3 3 1 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|119719264|ref|YP_919759.1| - 0.00013 22.2 5.6 0.25 11.7 0.6 3.3 4 0 0 4 4 4 2 Invasin, domain 3 CarbopepD_reg_2 PF13715.6 gi|119719264|ref|YP_919759.1| - 0.00021 21.2 9.2 0.0013 18.6 1.0 3.6 4 0 0 4 4 4 1 CarboxypepD_reg-like domain SpaA PF17802.1 gi|119719264|ref|YP_919759.1| - 0.00024 21.4 0.8 1 9.7 0.1 2.8 2 0 0 2 2 2 2 Prealbumin-like fold domain SdrD_B PF17210.3 gi|119719264|ref|YP_919759.1| - 0.0026 18.0 4.1 0.0065 16.7 0.6 2.6 3 0 0 3 3 3 1 SdrD B-like domain DUF4249 PF14054.6 gi|119719264|ref|YP_919759.1| - 0.024 14.3 0.6 0.055 13.1 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4249) bMG3 PF11974.8 gi|119719264|ref|YP_919759.1| - 0.049 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain DUF4493 PF14900.6 gi|119719264|ref|YP_919759.1| - 0.053 13.4 0.3 0.15 11.9 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4493) CBFD_NFYB_HMF PF00808.23 gi|119719265|ref|YP_919760.1| - 6.3e-16 58.4 0.1 7.5e-16 58.2 0.1 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|119719265|ref|YP_919760.1| - 7.9e-10 39.2 0.3 1e-09 38.8 0.3 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|119719265|ref|YP_919760.1| - 1.1e-05 25.6 0.1 1.4e-05 25.2 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|119719265|ref|YP_919760.1| - 8.6e-05 22.6 0.0 8.8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-X PF09415.10 gi|119719265|ref|YP_919760.1| - 0.0014 18.9 0.3 0.0017 18.6 0.3 1.2 1 0 0 1 1 1 1 CENP-S associating Centromere protein X CENP-S PF15630.6 gi|119719265|ref|YP_919760.1| - 0.0019 18.5 0.1 0.0024 18.2 0.1 1.2 1 0 0 1 1 1 1 CENP-S protein CENP-T_C PF15511.6 gi|119719265|ref|YP_919760.1| - 0.0051 16.9 0.1 0.0058 16.7 0.1 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-18kDa PF02269.16 gi|119719265|ref|YP_919760.1| - 0.0067 16.4 0.1 0.0085 16.1 0.1 1.2 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit Bromo_TP PF07524.13 gi|119719265|ref|YP_919760.1| - 0.059 13.4 0.0 0.077 13.0 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated EAP30 PF04157.16 gi|119719265|ref|YP_919760.1| - 0.069 12.4 0.0 0.075 12.3 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family Ribosomal_S17e PF00833.18 gi|119719266|ref|YP_919761.1| - 1.3e-20 73.5 0.8 1.5e-20 73.4 0.8 1.1 1 0 0 1 1 1 1 Ribosomal S17 RNA_pol_Rpb8 PF03870.15 gi|119719267|ref|YP_919762.1| - 7e-05 23.0 0.0 9.5e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb8 RNA_pol_RpbG PF16992.5 gi|119719267|ref|YP_919762.1| - 0.098 12.7 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb4 PF03874.16 gi|119719269|ref|YP_919764.1| - 4.4e-13 49.6 1.0 5.8e-13 49.2 1.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 DOPA_dioxygen PF08883.11 gi|119719269|ref|YP_919764.1| - 0.15 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Dopa 4,5-dioxygenase family DUF655 PF04919.12 gi|119719270|ref|YP_919765.1| - 2.1e-48 164.7 0.3 2.4e-48 164.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|119719270|ref|YP_919765.1| - 0.00016 21.8 0.1 0.00067 19.9 0.0 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|119719270|ref|YP_919765.1| - 4.1 8.1 4.8 8.8 7.0 0.1 3.0 2 1 1 3 3 3 0 Helix-hairpin-helix domain THUMP PF02926.17 gi|119719271|ref|YP_919766.1| - 8.3e-07 29.2 0.1 8.3e-07 29.2 0.1 2.1 3 0 0 3 3 3 1 THUMP domain DUF3614 PF12267.8 gi|119719271|ref|YP_919766.1| - 0.077 13.5 0.1 0.14 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3614) Ribosomal_L21e PF01157.18 gi|119719272|ref|YP_919767.1| - 1.4e-30 105.1 2.6 1.5e-30 105.0 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e TGT PF01702.18 gi|119719273|ref|YP_919768.1| - 4.5e-76 256.3 0.0 5.9e-76 255.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|119719273|ref|YP_919768.1| - 6.3e-10 39.1 0.0 1.3e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|119719274|ref|YP_919769.1| - 1.7e-33 116.5 0.1 1.9e-33 116.3 0.1 1.0 1 0 0 1 1 1 1 PAC2 family GPS2_interact PF15784.5 gi|119719274|ref|YP_919769.1| - 0.009 16.4 0.9 0.028 14.8 0.2 1.9 2 0 0 2 2 2 1 G-protein pathway suppressor 2-interacting domain Ribosomal_S8e PF01201.22 gi|119719275|ref|YP_919770.1| - 8.6e-27 94.0 2.7 9.9e-27 93.8 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e RNA_pol_RpbG PF16992.5 gi|119719275|ref|YP_919770.1| - 0.1 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G SRP19 PF01922.17 gi|119719276|ref|YP_919771.1| - 7.9e-20 71.6 0.5 1.1e-19 71.1 0.5 1.2 1 0 0 1 1 1 1 SRP19 protein Nif11 PF07862.11 gi|119719276|ref|YP_919771.1| - 0.045 14.1 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Nif11 domain GatB_N PF02934.15 gi|119719277|ref|YP_919772.1| - 4.8e-70 236.1 0.0 7.3e-70 235.5 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|119719277|ref|YP_919772.1| - 4.9e-26 91.4 1.8 8.5e-26 90.6 0.8 1.9 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|119719277|ref|YP_919772.1| - 2e-17 63.2 0.1 6.6e-17 61.5 0.0 2.0 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|119719277|ref|YP_919772.1| - 2e-07 31.2 1.0 3.9e-07 30.2 1.0 1.5 1 0 0 1 1 1 1 Yqey-like protein MDMPI_N PF11716.8 gi|119719277|ref|YP_919772.1| - 0.16 12.6 0.3 0.47 11.1 0.3 1.7 1 0 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain Asparaginase PF00710.20 gi|119719278|ref|YP_919773.1| - 5.7e-58 195.6 0.1 9.4e-58 194.9 0.1 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|119719278|ref|YP_919773.1| - 7e-37 126.1 0.1 8.5e-36 122.6 0.0 2.6 3 1 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|119719278|ref|YP_919773.1| - 4e-19 67.7 0.0 8.1e-19 66.7 0.0 1.6 1 0 0 1 1 1 1 GatD N-terminal domain Ribosomal_S30 PF04758.14 gi|119719279|ref|YP_919774.1| - 2e-10 40.7 1.2 2.2e-10 40.5 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 Ribonucleas_3_2 PF11469.8 gi|119719280|ref|YP_919775.1| - 7.5e-48 161.9 0.2 8.9e-48 161.6 0.2 1.1 1 0 0 1 1 1 1 Ribonuclease III RNA_pol_L_2 PF13656.6 gi|119719281|ref|YP_919776.1| - 2.4e-17 62.5 0.1 3.7e-17 61.9 0.0 1.3 2 0 0 2 2 2 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|119719281|ref|YP_919776.1| - 5.8e-07 28.8 0.0 3e-06 26.6 0.0 2.0 1 1 1 2 2 2 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Methyltransf_25 PF13649.6 gi|119719282|ref|YP_919777.1| - 4e-09 37.1 0.0 5.4e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119719282|ref|YP_919777.1| - 3.7e-08 33.3 0.0 4.4e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|119719282|ref|YP_919777.1| - 4.5e-06 26.2 0.0 5.2e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 gi|119719282|ref|YP_919777.1| - 1.1e-05 25.1 0.1 0.00019 21.0 0.1 2.3 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_11 PF08241.12 gi|119719282|ref|YP_919777.1| - 1.7e-05 25.4 0.0 2.3e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|119719282|ref|YP_919777.1| - 6.6e-05 22.8 0.0 9.1e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|119719282|ref|YP_919777.1| - 0.0001 21.9 0.0 0.00015 21.3 0.0 1.3 1 1 0 1 1 1 1 Putative methyltransferase PrmA PF06325.13 gi|119719282|ref|YP_919777.1| - 0.0002 20.9 0.0 0.00025 20.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.18 gi|119719282|ref|YP_919777.1| - 0.00049 19.5 0.0 0.00061 19.2 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_15 PF09445.10 gi|119719282|ref|YP_919777.1| - 0.0018 17.9 0.0 0.0039 16.8 0.0 1.5 1 1 1 2 2 2 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|119719282|ref|YP_919777.1| - 0.0037 17.0 0.2 0.37 10.4 0.2 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|119719282|ref|YP_919777.1| - 0.0044 16.9 0.0 0.0051 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|119719282|ref|YP_919777.1| - 0.0058 16.4 0.0 0.0081 15.9 0.0 1.1 1 0 0 1 1 1 1 DNA methylase MetW PF07021.12 gi|119719282|ref|YP_919777.1| - 0.015 14.9 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|119719282|ref|YP_919777.1| - 0.076 12.3 0.0 0.088 12.1 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family AsnC_trans_reg PF01037.21 gi|119719283|ref|YP_919778.1| - 6.1e-08 32.5 0.2 9.9e-08 31.8 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 gi|119719283|ref|YP_919778.1| - 6.5e-08 32.4 0.0 2.9e-07 30.3 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|119719283|ref|YP_919778.1| - 1.1e-06 28.1 0.2 2.4e-06 27.0 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|119719283|ref|YP_919778.1| - 2.3e-05 24.3 0.1 4e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|119719283|ref|YP_919778.1| - 0.00039 20.2 0.5 0.00073 19.4 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119719283|ref|YP_919778.1| - 0.001 19.1 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|119719283|ref|YP_919778.1| - 0.0017 18.3 0.3 0.0063 16.4 0.3 2.1 2 1 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|119719283|ref|YP_919778.1| - 0.0026 17.6 0.1 0.2 11.6 0.0 3.0 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|119719283|ref|YP_919778.1| - 0.007 16.5 0.5 0.02 15.1 0.1 2.0 2 1 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|119719283|ref|YP_919778.1| - 0.0099 16.2 0.0 0.037 14.4 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_10 PF04967.12 gi|119719283|ref|YP_919778.1| - 0.016 15.0 0.8 0.41 10.5 0.1 2.4 2 0 0 2 2 2 0 HTH DNA binding domain AbiEii PF08843.11 gi|119719283|ref|YP_919778.1| - 0.038 13.9 0.1 0.082 12.9 0.0 1.5 2 0 0 2 2 2 0 Nucleotidyl transferase AbiEii toxin, Type IV TA system LexA_DNA_bind PF01726.16 gi|119719283|ref|YP_919778.1| - 0.072 12.9 0.6 0.29 11.0 0.6 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_36 PF13730.6 gi|119719283|ref|YP_919778.1| - 0.15 12.0 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Pkinase PF00069.25 gi|119719284|ref|YP_919779.1| - 1.3e-07 31.2 0.0 1.9e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|119719284|ref|YP_919779.1| - 1.5e-06 27.9 0.0 2.3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|119719284|ref|YP_919779.1| - 0.011 15.7 0.2 2.4 8.0 0.1 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family tRNA_NucTransf2 PF09249.11 gi|119719285|ref|YP_919780.1| - 3.2e-35 120.8 0.0 6.8e-35 119.7 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|119719285|ref|YP_919780.1| - 3.9e-10 39.9 0.1 1.3e-09 38.2 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|119719285|ref|YP_919780.1| - 0.0011 19.2 0.0 0.0022 18.2 0.0 1.4 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|119719285|ref|YP_919780.1| - 0.04 14.0 0.0 0.084 13.0 0.0 1.5 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase LigT_PEase PF02834.16 gi|119719286|ref|YP_919781.1| - 3.7e-32 110.4 0.1 1.2e-18 67.1 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|119719286|ref|YP_919781.1| - 7.8e-15 55.1 0.0 9.8e-15 54.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|119719286|ref|YP_919781.1| - 1.4e-11 44.7 0.0 5.9e-11 42.6 0.0 1.9 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|119719286|ref|YP_919781.1| - 0.0026 17.3 0.0 0.0047 16.4 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised conserved protein B-block_TFIIIC PF04182.12 gi|119719287|ref|YP_919782.1| - 2.1e-10 40.6 0.3 3.1e-10 40.1 0.3 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC RNA_pol_Rpc34 PF05158.12 gi|119719287|ref|YP_919782.1| - 4.9e-07 29.4 2.0 8.6e-06 25.4 0.4 2.0 1 1 1 2 2 2 1 RNA polymerase Rpc34 subunit HTH_27 PF13463.6 gi|119719287|ref|YP_919782.1| - 0.0003 21.2 0.2 0.00042 20.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|119719287|ref|YP_919782.1| - 0.00051 19.9 0.2 0.00074 19.4 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|119719287|ref|YP_919782.1| - 0.0045 16.9 0.1 0.0079 16.1 0.1 1.3 1 0 0 1 1 1 1 MarR family z-alpha PF02295.17 gi|119719287|ref|YP_919782.1| - 0.021 14.8 0.3 0.042 13.9 0.3 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain RED_N PF07808.13 gi|119719287|ref|YP_919782.1| - 0.022 14.4 0.1 0.026 14.1 0.1 1.1 1 0 0 1 1 1 0 RED-like protein N-terminal region TrmB PF01978.19 gi|119719287|ref|YP_919782.1| - 0.022 14.7 0.5 0.041 13.8 0.5 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119719287|ref|YP_919782.1| - 0.044 13.3 0.8 0.082 12.5 0.8 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_micro PF17007.5 gi|119719287|ref|YP_919782.1| - 0.045 12.6 0.1 0.05 12.4 0.1 1.1 1 0 0 1 1 1 0 HTH-like Cdc6_C PF09079.11 gi|119719287|ref|YP_919782.1| - 0.056 13.4 0.7 2 8.4 0.1 2.2 1 1 1 2 2 2 0 CDC6, C terminal winged helix domain RPA_C PF08784.11 gi|119719287|ref|YP_919782.1| - 0.063 13.9 0.0 0.085 13.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal ATP_bind_1 PF03029.17 gi|119719288|ref|YP_919783.1| - 1.5e-62 211.5 0.1 1.7e-62 211.4 0.1 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|119719288|ref|YP_919783.1| - 2.6e-06 27.1 0.0 0.00012 21.6 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|119719288|ref|YP_919783.1| - 4.8e-05 23.3 0.8 0.52 10.2 0.1 3.4 3 1 0 3 3 3 2 RsgA GTPase Sigma54_activ_2 PF14532.6 gi|119719288|ref|YP_919783.1| - 6.4e-05 23.1 0.0 0.15 12.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain MMR_HSR1 PF01926.23 gi|119719288|ref|YP_919783.1| - 0.0016 18.5 0.0 0.0046 17.0 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|119719288|ref|YP_919783.1| - 0.0021 18.3 0.0 0.0051 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Ras PF00071.22 gi|119719288|ref|YP_919783.1| - 0.0036 16.9 0.0 0.44 10.1 0.0 2.2 2 0 0 2 2 2 1 Ras family AAA_24 PF13479.6 gi|119719288|ref|YP_919783.1| - 0.0051 16.6 0.0 0.0071 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|119719288|ref|YP_919783.1| - 0.0059 17.0 0.0 0.072 13.5 0.0 2.3 2 0 0 2 2 2 1 RNA helicase NOG1 PF06858.14 gi|119719288|ref|YP_919783.1| - 0.0073 16.1 0.0 0.024 14.4 0.0 1.9 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) Dynamin_N PF00350.23 gi|119719288|ref|YP_919783.1| - 0.0074 16.4 0.1 0.45 10.6 0.0 2.4 2 1 0 2 2 2 1 Dynamin family DUF87 PF01935.17 gi|119719288|ref|YP_919783.1| - 0.01 16.0 0.0 0.047 13.8 0.0 1.8 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_33 PF13671.6 gi|119719288|ref|YP_919783.1| - 0.01 16.0 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|119719288|ref|YP_919783.1| - 0.016 14.6 0.0 0.28 10.6 0.0 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_23 PF13476.6 gi|119719288|ref|YP_919783.1| - 0.02 15.4 0.0 0.03 14.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119719288|ref|YP_919783.1| - 0.035 13.8 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|119719288|ref|YP_919783.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|119719288|ref|YP_919783.1| - 0.061 13.7 0.0 0.071 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 gi|119719288|ref|YP_919783.1| - 0.073 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family CLP1_P PF16575.5 gi|119719288|ref|YP_919783.1| - 0.078 12.8 0.0 0.77 9.5 0.0 2.2 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NB-ARC PF00931.22 gi|119719288|ref|YP_919783.1| - 0.087 12.0 0.0 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain PhoH PF02562.16 gi|119719288|ref|YP_919783.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.6 gi|119719288|ref|YP_919783.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119719288|ref|YP_919783.1| - 0.12 12.9 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter SMC_N PF02463.19 gi|119719288|ref|YP_919783.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|119719288|ref|YP_919783.1| - 0.13 12.8 0.1 0.27 11.8 0.0 1.8 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|119719288|ref|YP_919783.1| - 0.23 11.0 0.1 14 5.2 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain OMPdecase PF00215.24 gi|119719289|ref|YP_919784.1| - 1.8e-11 44.1 0.3 2.2e-10 40.5 0.3 2.2 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Laminin_II PF06009.12 gi|119719290|ref|YP_919785.1| - 2.4e-08 34.1 28.5 3.8e-05 23.7 8.2 3.7 1 1 2 3 3 3 2 Laminin Domain II TMF_TATA_bd PF12325.8 gi|119719290|ref|YP_919785.1| - 1.4e-07 31.7 11.2 1.4e-07 31.7 11.2 4.7 2 2 2 4 4 4 1 TATA element modulatory factor 1 TATA binding Spc7 PF08317.11 gi|119719290|ref|YP_919785.1| - 6e-07 28.6 45.5 0.0045 15.9 13.5 4.0 1 1 3 4 4 4 3 Spc7 kinetochore protein HIP1_clath_bdg PF16515.5 gi|119719290|ref|YP_919785.1| - 2.9e-06 27.8 34.2 0.0017 18.9 4.8 4.2 3 1 1 4 4 4 2 Clathrin-binding domain of Huntingtin-interacting protein 1 Sec34 PF04136.15 gi|119719290|ref|YP_919785.1| - 5.8e-06 26.2 23.0 0.00094 19.1 4.0 4.0 2 2 2 4 4 4 3 Sec34-like family UPF0242 PF06785.11 gi|119719290|ref|YP_919785.1| - 1.1e-05 25.7 11.7 1.1e-05 25.7 11.7 3.2 1 1 2 3 3 2 1 Uncharacterised protein family (UPF0242) N-terminus DUF4763 PF15960.5 gi|119719290|ref|YP_919785.1| - 2.2e-05 23.9 10.9 2.2e-05 23.9 10.9 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4763) GAS PF13851.6 gi|119719290|ref|YP_919785.1| - 4.1e-05 23.0 48.3 0.026 13.9 11.7 3.9 1 1 3 4 4 4 3 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|119719290|ref|YP_919785.1| - 4.7e-05 23.4 48.2 0.0018 18.3 8.8 4.7 2 2 2 4 4 4 3 TPR/MLP1/MLP2-like protein KASH_CCD PF14662.6 gi|119719290|ref|YP_919785.1| - 4.9e-05 23.3 23.1 4.9e-05 23.3 23.1 2.7 1 1 1 2 2 1 1 Coiled-coil region of CCDC155 or KASH ATG16 PF08614.11 gi|119719290|ref|YP_919785.1| - 6.2e-05 23.3 40.9 0.00013 22.3 13.8 3.2 2 1 1 3 3 2 2 Autophagy protein 16 (ATG16) NPV_P10 PF05531.12 gi|119719290|ref|YP_919785.1| - 9.8e-05 22.7 17.9 0.1 13.1 4.6 4.7 1 1 3 4 4 3 2 Nucleopolyhedrovirus P10 protein APG6_N PF17675.1 gi|119719290|ref|YP_919785.1| - 0.00011 22.7 47.6 0.0066 17.0 21.3 3.6 2 2 1 3 3 3 2 Apg6 coiled-coil region Baculo_PEP_C PF04513.12 gi|119719290|ref|YP_919785.1| - 0.00011 22.2 12.8 0.026 14.6 0.7 3.2 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.8 gi|119719290|ref|YP_919785.1| - 0.00019 20.8 37.0 0.0046 16.3 6.7 3.4 1 1 1 3 3 3 2 Protein of unknown function (DUF3450) Fez1 PF06818.15 gi|119719290|ref|YP_919785.1| - 0.00021 21.8 39.6 0.012 16.1 15.3 2.3 1 1 1 2 2 2 2 Fez1 SKA2 PF16740.5 gi|119719290|ref|YP_919785.1| - 0.00024 20.8 32.6 0.0015 18.3 10.9 4.9 2 2 2 4 4 3 1 Spindle and kinetochore-associated protein 2 DUF4201 PF13870.6 gi|119719290|ref|YP_919785.1| - 0.00029 20.6 42.4 0.092 12.5 7.2 4.2 1 1 3 4 4 4 2 Domain of unknown function (DUF4201) NleF_casp_inhib PF16809.5 gi|119719290|ref|YP_919785.1| - 0.00061 19.7 10.1 0.00061 19.7 10.1 3.6 2 2 1 3 3 3 1 NleF caspase inhibitor IFT57 PF10498.9 gi|119719290|ref|YP_919785.1| - 0.00062 18.8 36.6 0.031 13.2 14.4 2.7 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 FlxA PF14282.6 gi|119719290|ref|YP_919785.1| - 0.0007 19.5 36.6 0.0096 15.9 6.9 4.6 3 2 3 6 6 6 1 FlxA-like protein Laminin_I PF06008.14 gi|119719290|ref|YP_919785.1| - 0.00074 19.3 34.0 0.0036 17.1 11.5 3.3 1 1 2 3 3 3 2 Laminin Domain I CENP-F_leu_zip PF10473.9 gi|119719290|ref|YP_919785.1| - 0.00075 19.5 47.6 0.029 14.4 8.9 4.2 1 1 3 4 4 4 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 LPP PF04728.13 gi|119719290|ref|YP_919785.1| - 0.00093 19.5 19.0 0.12 12.7 0.1 5.6 3 2 3 6 6 5 1 Lipoprotein leucine-zipper Uso1_p115_C PF04871.13 gi|119719290|ref|YP_919785.1| - 0.00093 19.6 37.9 0.0095 16.3 9.4 4.2 1 1 2 3 3 3 1 Uso1 / p115 like vesicle tethering protein, C terminal region DUF948 PF06103.11 gi|119719290|ref|YP_919785.1| - 0.00095 19.4 13.4 0.36 11.1 2.7 4.4 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|119719290|ref|YP_919785.1| - 0.00097 19.2 26.9 0.14 12.2 4.2 4.7 1 1 3 4 4 4 2 Protein of unknown function (DUF1664) MscS_porin PF12795.7 gi|119719290|ref|YP_919785.1| - 0.0012 18.5 42.2 0.0031 17.1 20.8 2.6 2 1 0 2 2 2 1 Mechanosensitive ion channel porin domain FH2 PF02181.23 gi|119719290|ref|YP_919785.1| - 0.0013 18.0 18.2 0.042 13.0 3.9 2.3 1 1 1 2 2 2 2 Formin Homology 2 Domain DUF724 PF05266.14 gi|119719290|ref|YP_919785.1| - 0.0013 18.6 34.6 0.0078 16.1 10.8 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF724) FapA PF03961.13 gi|119719290|ref|YP_919785.1| - 0.0024 16.6 39.0 0.096 11.3 14.4 3.1 1 1 2 3 3 3 3 Flagellar Assembly Protein A CENP-H PF05837.12 gi|119719290|ref|YP_919785.1| - 0.0029 18.0 9.1 0.0029 18.0 9.1 4.2 3 2 2 5 5 4 2 Centromere protein H (CENP-H) Mod_r PF07200.13 gi|119719290|ref|YP_919785.1| - 0.003 17.7 8.7 0.003 17.7 8.7 4.2 1 1 1 3 3 2 1 Modifier of rudimentary (Mod(r)) protein DUF2968 PF11180.8 gi|119719290|ref|YP_919785.1| - 0.0033 17.1 30.1 0.042 13.5 15.9 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2968) TACC_C PF05010.14 gi|119719290|ref|YP_919785.1| - 0.0035 17.2 34.3 0.14 12.0 12.9 2.7 2 1 0 2 2 2 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal COG6 PF06419.11 gi|119719290|ref|YP_919785.1| - 0.0036 15.6 24.8 0.081 11.1 5.9 3.7 1 1 3 4 4 4 2 Conserved oligomeric complex COG6 HOOK PF05622.12 gi|119719290|ref|YP_919785.1| - 0.0037 15.5 41.7 0.096 10.8 6.2 3.5 1 1 0 2 2 2 2 HOOK protein YabA PF06156.13 gi|119719290|ref|YP_919785.1| - 0.0039 17.8 37.7 1.6 9.4 6.0 4.9 1 1 2 3 3 3 0 Initiation control protein YabA BRE1 PF08647.11 gi|119719290|ref|YP_919785.1| - 0.0047 17.0 9.2 0.0047 17.0 9.2 3.8 2 2 2 4 4 4 1 BRE1 E3 ubiquitin ligase FUSC PF04632.12 gi|119719290|ref|YP_919785.1| - 0.0051 15.4 8.2 0.02 13.5 6.7 2.0 1 1 0 1 1 1 1 Fusaric acid resistance protein family DUF3584 PF12128.8 gi|119719290|ref|YP_919785.1| - 0.0051 14.4 35.6 0.0067 14.0 35.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.22 gi|119719290|ref|YP_919785.1| - 0.0057 16.9 40.8 0.02 15.1 7.2 4.5 1 1 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain PI3K_P85_iSH2 PF16454.5 gi|119719290|ref|YP_919785.1| - 0.0064 16.1 37.6 0.053 13.1 15.0 3.4 1 1 3 4 4 2 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF4200 PF13863.6 gi|119719290|ref|YP_919785.1| - 0.0065 16.9 8.4 0.0065 16.9 8.4 5.0 1 1 3 4 4 2 1 Domain of unknown function (DUF4200) Filament PF00038.21 gi|119719290|ref|YP_919785.1| - 0.0078 15.8 42.2 0.026 14.1 17.0 3.2 2 2 0 2 2 2 1 Intermediate filament protein DUF349 PF03993.12 gi|119719290|ref|YP_919785.1| - 0.0084 16.4 5.7 0.0084 16.4 5.7 4.6 3 2 1 4 4 3 1 Domain of Unknown Function (DUF349) ADIP PF11559.8 gi|119719290|ref|YP_919785.1| - 0.0085 16.2 10.4 0.0085 16.2 10.4 4.7 1 1 4 5 5 5 1 Afadin- and alpha -actinin-Binding ZapB PF06005.12 gi|119719290|ref|YP_919785.1| - 0.01 16.3 10.4 0.01 16.3 10.4 6.0 1 1 3 5 5 4 0 Cell division protein ZapB TolA_bind_tri PF16331.5 gi|119719290|ref|YP_919785.1| - 0.012 15.7 3.0 0.012 15.7 3.0 6.8 2 2 4 6 6 5 0 TolA binding protein trimerisation DivIC PF04977.15 gi|119719290|ref|YP_919785.1| - 0.013 15.2 49.4 0.21 11.4 5.9 6.1 2 2 4 6 6 6 0 Septum formation initiator KELK PF15796.5 gi|119719290|ref|YP_919785.1| - 0.013 15.9 5.2 0.013 15.9 5.2 5.1 3 1 0 4 4 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Allexi_40kDa PF05549.11 gi|119719290|ref|YP_919785.1| - 0.015 14.8 18.2 0.036 13.6 4.7 2.9 1 1 2 3 3 3 0 Allexivirus 40kDa protein EzrA PF06160.12 gi|119719290|ref|YP_919785.1| - 0.016 13.4 42.1 0.014 13.6 6.6 3.6 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF2730 PF10805.8 gi|119719290|ref|YP_919785.1| - 0.017 15.2 20.1 0.027 14.6 1.3 4.3 1 1 4 5 5 5 0 Protein of unknown function (DUF2730) COG2 PF06148.11 gi|119719290|ref|YP_919785.1| - 0.021 14.9 29.3 0.27 11.3 6.4 4.3 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF5082 PF16888.5 gi|119719290|ref|YP_919785.1| - 0.022 15.0 37.7 0.027 14.7 8.1 4.2 1 1 3 4 4 4 0 Domain of unknown function (DUF5082) LXG PF04740.12 gi|119719290|ref|YP_919785.1| - 0.027 14.2 24.1 0.1 12.3 5.5 2.9 2 2 1 3 3 3 0 LXG domain of WXG superfamily FlaC_arch PF05377.11 gi|119719290|ref|YP_919785.1| - 0.03 14.7 30.2 0.032 14.6 2.6 6.4 4 2 3 7 7 6 0 Flagella accessory protein C (FlaC) Dor1 PF04124.12 gi|119719290|ref|YP_919785.1| - 0.037 12.7 26.4 0.043 12.5 4.5 3.8 1 1 2 4 4 4 0 Dor1-like family Cytochrom_C_2 PF01322.20 gi|119719290|ref|YP_919785.1| - 0.043 14.7 3.7 1.2 10.0 0.1 3.2 1 1 2 3 3 3 0 Cytochrome C' DUF16 PF01519.16 gi|119719290|ref|YP_919785.1| - 0.045 14.2 29.3 0.25 11.8 9.8 3.6 1 1 2 3 3 3 0 Protein of unknown function DUF16 Flagellar_rod PF05149.12 gi|119719290|ref|YP_919785.1| - 0.055 12.9 32.7 0.34 10.3 8.7 3.0 1 1 0 2 2 2 0 Paraflagellar rod protein DUF2353 PF09789.9 gi|119719290|ref|YP_919785.1| - 0.067 12.5 39.4 0.25 10.7 12.7 3.0 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) Atg14 PF10186.9 gi|119719290|ref|YP_919785.1| - 0.073 12.1 45.0 0.013 14.6 20.0 2.7 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 PilJ PF13675.6 gi|119719290|ref|YP_919785.1| - 0.077 13.0 19.6 0.24 11.4 3.3 3.9 1 1 3 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term HAP1_N PF04849.13 gi|119719290|ref|YP_919785.1| - 0.083 12.1 40.5 0.1 11.8 6.2 3.5 1 1 2 3 3 3 0 HAP1 N-terminal conserved region DUF4407 PF14362.6 gi|119719290|ref|YP_919785.1| - 0.084 12.2 27.9 0.24 10.7 13.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Golgin_A5 PF09787.9 gi|119719290|ref|YP_919785.1| - 0.086 12.3 43.7 0.045 13.2 16.7 2.3 1 1 1 2 2 2 0 Golgin subfamily A member 5 MCPsignal PF00015.21 gi|119719290|ref|YP_919785.1| - 0.089 12.6 11.9 0.23 11.3 2.7 2.4 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4140 PF13600.6 gi|119719290|ref|YP_919785.1| - 0.094 13.2 40.7 0.83 10.1 1.5 6.0 2 2 4 6 6 5 0 N-terminal domain of unknown function (DUF4140) FTA4 PF13093.6 gi|119719290|ref|YP_919785.1| - 0.097 12.6 40.1 0.5 10.2 15.8 3.9 1 1 2 3 3 3 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Nup54 PF13874.6 gi|119719290|ref|YP_919785.1| - 0.1 12.7 39.8 1.5 8.9 14.8 3.4 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Swi5 PF07061.11 gi|119719290|ref|YP_919785.1| - 0.11 12.7 35.9 1.7 8.7 5.1 5.8 2 2 4 6 6 5 0 Swi5 DUF4051 PF13260.6 gi|119719290|ref|YP_919785.1| - 0.12 12.2 4.3 1.6 8.5 0.2 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF4051) CCDC144C PF14915.6 gi|119719290|ref|YP_919785.1| - 0.14 11.2 38.8 0.26 10.4 14.3 2.8 1 1 0 2 2 2 0 CCDC144C protein coiled-coil region WXG100 PF06013.12 gi|119719290|ref|YP_919785.1| - 0.16 12.2 18.1 12 6.3 0.8 5.7 3 2 1 5 5 4 0 Proteins of 100 residues with WXG Cob_adeno_trans PF01923.18 gi|119719290|ref|YP_919785.1| - 0.17 12.0 14.7 0.4 10.8 2.8 3.1 1 1 1 2 2 2 0 Cobalamin adenosyltransferase PI_PP_I PF18363.1 gi|119719290|ref|YP_919785.1| - 0.23 11.6 9.5 0.26 11.5 0.7 3.4 1 1 2 4 4 4 0 Phosphoinositide phosphatase insertion domain SHE3 PF17078.5 gi|119719290|ref|YP_919785.1| - 0.28 10.8 35.2 0.32 10.7 15.3 3.7 1 1 2 3 3 3 0 SWI5-dependent HO expression protein 3 AAA_13 PF13166.6 gi|119719290|ref|YP_919785.1| - 0.3 9.7 34.6 0.021 13.5 21.1 2.6 1 1 1 2 2 2 0 AAA domain Cyclase_polyket PF04673.12 gi|119719290|ref|YP_919785.1| - 0.36 11.1 5.9 2.6 8.4 0.1 3.2 3 0 0 3 3 3 0 Polyketide synthesis cyclase zf-C4H2 PF10146.9 gi|119719290|ref|YP_919785.1| - 0.38 11.0 36.2 0.14 12.4 11.9 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein CALCOCO1 PF07888.11 gi|119719290|ref|YP_919785.1| - 0.4 9.5 43.6 0.069 12.0 16.6 2.8 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF1729 PF08354.10 gi|119719290|ref|YP_919785.1| - 0.45 9.4 8.1 0.15 10.9 1.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1729) Occludin_ELL PF07303.13 gi|119719290|ref|YP_919785.1| - 0.46 11.3 33.6 0.33 11.7 6.4 4.5 1 1 4 5 5 5 0 Occludin homology domain SKA1 PF07160.12 gi|119719290|ref|YP_919785.1| - 0.48 10.2 26.1 0.28 11.0 6.0 3.5 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 TMPIT PF07851.13 gi|119719290|ref|YP_919785.1| - 0.52 9.5 32.7 0.23 10.6 5.6 3.6 1 1 3 4 4 4 0 TMPIT-like protein Cytochrom_B562 PF07361.11 gi|119719290|ref|YP_919785.1| - 0.56 10.9 20.1 1.3 9.8 0.6 3.8 3 1 1 4 4 3 0 Cytochrome b562 HD_assoc PF13286.6 gi|119719290|ref|YP_919785.1| - 0.61 10.7 5.6 0.41 11.2 2.0 2.6 2 1 1 3 3 1 0 Phosphohydrolase-associated domain FliJ PF02050.16 gi|119719290|ref|YP_919785.1| - 0.66 10.2 45.7 0.62 10.3 16.4 3.9 2 2 1 3 3 3 0 Flagellar FliJ protein Prominin PF05478.11 gi|119719290|ref|YP_919785.1| - 0.89 7.4 20.5 0.59 8.0 4.8 2.1 1 1 1 2 2 2 0 Prominin T3SSipB PF16535.5 gi|119719290|ref|YP_919785.1| - 0.89 10.0 15.8 4.6 7.7 1.7 2.9 2 1 1 3 3 3 0 Type III cell invasion protein SipB DUF932 PF06067.11 gi|119719290|ref|YP_919785.1| - 0.91 9.2 10.0 0.23 11.2 1.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF932) Rootletin PF15035.6 gi|119719290|ref|YP_919785.1| - 0.91 9.5 40.1 0.21 11.6 17.1 2.6 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF4472 PF14739.6 gi|119719290|ref|YP_919785.1| - 1 10.1 36.8 0.67 10.7 5.6 4.4 1 1 2 4 4 4 0 Domain of unknown function (DUF4472) FPP PF05911.11 gi|119719290|ref|YP_919785.1| - 1.1 7.3 40.4 0.49 8.5 13.6 2.6 1 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil CDPS PF16715.5 gi|119719290|ref|YP_919785.1| - 1.2 8.8 13.6 0.9 9.1 3.2 2.7 2 2 0 2 2 2 0 Cyclodipeptide synthase CorA PF01544.18 gi|119719290|ref|YP_919785.1| - 1.3 8.3 25.8 0.64 9.3 8.4 2.6 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein Rab5-bind PF09311.11 gi|119719290|ref|YP_919785.1| - 1.3 8.3 36.6 0.066 12.6 13.0 3.0 1 1 1 3 3 3 0 Rabaptin-like protein Spc24 PF08286.11 gi|119719290|ref|YP_919785.1| - 1.3 9.3 37.1 3.2 8.1 1.1 5.9 1 1 1 3 3 2 0 Spc24 subunit of Ndc80 OmpH PF03938.14 gi|119719290|ref|YP_919785.1| - 1.5 9.2 47.7 1.3 9.3 2.5 4.1 1 1 3 4 4 4 0 Outer membrane protein (OmpH-like) DUF745 PF05335.13 gi|119719290|ref|YP_919785.1| - 1.6 8.4 27.6 0.37 10.5 10.2 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF745) SpecificRecomb PF10136.9 gi|119719290|ref|YP_919785.1| - 1.7 6.8 19.4 0.17 10.2 9.7 2.1 1 1 0 2 2 2 0 Site-specific recombinase LOH1CR12 PF10158.9 gi|119719290|ref|YP_919785.1| - 1.8 8.6 17.7 0.42 10.6 2.8 3.4 2 2 1 3 3 3 0 Tumour suppressor protein Leu_zip PF15294.6 gi|119719290|ref|YP_919785.1| - 1.8 8.0 36.1 0.13 11.7 12.9 2.7 2 1 1 3 3 3 0 Leucine zipper APG17 PF04108.12 gi|119719290|ref|YP_919785.1| - 1.9 7.5 30.6 2.3 7.2 3.3 2.9 1 1 0 2 2 2 0 Autophagy protein Apg17 DUF2937 PF11157.8 gi|119719290|ref|YP_919785.1| - 1.9 8.2 16.4 0.24 11.1 2.0 3.1 2 2 1 3 3 2 0 Protein of unknown function (DUF2937) DASH_Dam1 PF08653.10 gi|119719290|ref|YP_919785.1| - 1.9 8.3 7.5 40 4.1 0.1 5.1 3 2 3 7 7 5 0 DASH complex subunit Dam1 AATF-Che1 PF13339.6 gi|119719290|ref|YP_919785.1| - 2.2 9.0 25.5 4.6 7.9 1.6 4.0 1 1 1 2 2 1 0 Apoptosis antagonizing transcription factor DUF2203 PF09969.9 gi|119719290|ref|YP_919785.1| - 2.3 9.0 30.6 32 5.3 10.3 4.2 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) Phage_GPO PF05929.11 gi|119719290|ref|YP_919785.1| - 2.3 7.8 18.8 2.4 7.7 4.2 2.7 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Jnk-SapK_ap_N PF09744.9 gi|119719290|ref|YP_919785.1| - 2.4 8.4 48.3 0.97 9.6 14.6 3.7 1 1 3 4 4 4 0 JNK_SAPK-associated protein-1 DHR10 PF18595.1 gi|119719290|ref|YP_919785.1| - 2.4 8.2 50.8 0.66 10.0 8.2 5.0 2 2 2 5 5 5 0 Designed helical repeat protein 10 domain DUF4618 PF15397.6 gi|119719290|ref|YP_919785.1| - 2.6 7.4 37.5 0.78 9.1 2.7 5.0 1 1 2 4 4 4 0 Domain of unknown function (DUF4618) Mer2 PF09074.10 gi|119719290|ref|YP_919785.1| - 2.8 7.7 28.9 0.021 14.6 8.7 3.1 1 1 2 3 3 3 0 Mer2 HBM PF16591.5 gi|119719290|ref|YP_919785.1| - 2.8 7.3 29.1 0.78 9.1 1.3 3.8 1 1 3 4 4 4 0 Helical bimodular sensor domain Syntaxin-6_N PF09177.11 gi|119719290|ref|YP_919785.1| - 3.1 8.4 28.9 9.8 6.8 6.0 4.4 1 1 2 4 4 4 0 Syntaxin 6, N-terminal DUF4298 PF14131.6 gi|119719290|ref|YP_919785.1| - 3.5 7.7 23.7 0.3 11.1 0.5 5.0 2 2 3 5 5 5 0 Domain of unknown function (DUF4298) THOC7 PF05615.13 gi|119719290|ref|YP_919785.1| - 3.6 7.9 46.1 3.4 8.0 9.6 5.1 1 1 3 5 5 5 0 Tho complex subunit 7 GldM_N PF12081.8 gi|119719290|ref|YP_919785.1| - 4 7.5 23.3 13 5.8 7.9 3.6 1 1 2 3 3 3 0 GldM N-terminal domain Taxilin PF09728.9 gi|119719290|ref|YP_919785.1| - 4.1 6.5 44.1 2.9 7.0 12.8 3.4 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Med3 PF11593.8 gi|119719290|ref|YP_919785.1| - 4.5 6.4 15.6 3.7 6.6 5.0 3.0 2 2 2 4 4 4 0 Mediator complex subunit 3 fungal Lebercilin PF15619.6 gi|119719290|ref|YP_919785.1| - 5.1 6.7 51.2 0.94 9.1 27.3 3.7 1 1 0 2 2 1 0 Ciliary protein causing Leber congenital amaurosis disease PspA_IM30 PF04012.12 gi|119719290|ref|YP_919785.1| - 5.2 6.6 44.5 2.9 7.4 1.5 4.4 1 1 2 3 3 3 0 PspA/IM30 family DUF3037 PF11236.8 gi|119719290|ref|YP_919785.1| - 5.5 7.4 9.9 8.6 6.8 1.0 3.3 1 1 3 4 4 3 0 Protein of unknown function (DUF3037) DUF812 PF05667.11 gi|119719290|ref|YP_919785.1| - 5.8 5.7 46.1 0.16 10.9 6.1 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF812) COX5A PF02284.16 gi|119719290|ref|YP_919785.1| - 5.9 6.9 13.6 0.77 9.8 1.9 3.5 3 1 1 4 4 2 0 Cytochrome c oxidase subunit Va V_ATPase_I PF01496.19 gi|119719290|ref|YP_919785.1| - 6.5 4.5 28.7 2.3 6.1 12.5 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family MAD PF05557.13 gi|119719290|ref|YP_919785.1| - 6.8 4.9 45.8 0.66 8.3 29.7 2.3 1 1 0 1 1 1 0 Mitotic checkpoint protein DUF4795 PF16043.5 gi|119719290|ref|YP_919785.1| - 7.5 6.1 36.6 0.14 11.8 17.7 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) DASH_Dad2 PF08654.10 gi|119719290|ref|YP_919785.1| - 8 7.0 25.4 7.2 7.1 2.4 5.6 1 1 4 5 5 5 0 DASH complex subunit Dad2 DUF4665 PF15679.5 gi|119719290|ref|YP_919785.1| - 8.4 7.1 23.7 2.5 8.8 0.7 4.0 2 2 2 4 4 3 0 Domain of unknown function (DUF4665) She9_MDM33 PF05546.11 gi|119719290|ref|YP_919785.1| - 8.9 6.1 31.8 4.1 7.2 4.1 3.8 2 2 1 3 3 3 0 She9 / Mdm33 family PRKG1_interact PF15898.5 gi|119719290|ref|YP_919785.1| - 9 7.3 46.0 10 7.1 1.8 4.8 2 1 2 4 4 4 0 cGMP-dependent protein kinase interacting domain JIP_LZII PF16471.5 gi|119719290|ref|YP_919785.1| - 9.3 6.5 39.8 0.57 10.4 11.1 5.5 1 1 5 6 6 5 0 JNK-interacting protein leucine zipper II TFIIB PF00382.19 gi|119719291|ref|YP_919786.1| - 1.7e-17 63.2 0.1 1e-07 31.9 0.0 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|119719291|ref|YP_919786.1| - 3e-08 33.0 0.3 5.3e-08 32.3 0.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|119719291|ref|YP_919786.1| - 8.3e-05 22.7 0.0 0.17 12.0 0.0 2.5 2 0 0 2 2 2 2 Cyclin, C-terminal domain Zn_ribbon_SprT PF17283.2 gi|119719291|ref|YP_919786.1| - 0.00094 19.0 0.5 0.0021 17.9 0.5 1.6 1 0 0 1 1 1 1 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119719291|ref|YP_919786.1| - 0.0026 17.6 0.3 0.0055 16.6 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|119719291|ref|YP_919786.1| - 0.0027 17.1 3.7 0.35 10.3 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|119719291|ref|YP_919786.1| - 0.0034 17.4 0.3 0.0058 16.6 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119719291|ref|YP_919786.1| - 0.019 14.6 6.8 0.1 12.3 6.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Rrf2 PF02082.20 gi|119719291|ref|YP_919786.1| - 0.039 14.3 0.4 9.6 6.6 0.0 3.2 2 1 1 3 3 3 0 Transcriptional regulator UPF0547 PF10571.9 gi|119719291|ref|YP_919786.1| - 0.058 13.5 8.4 0.12 12.5 1.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HTH_Tnp_ISL3 PF13542.6 gi|119719291|ref|YP_919786.1| - 0.091 12.2 0.2 0.39 10.2 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Trp_repressor PF01371.19 gi|119719291|ref|YP_919786.1| - 0.092 12.9 0.1 0.25 11.5 0.1 1.7 1 0 0 1 1 1 0 Trp repressor protein zf-C2H2 PF00096.26 gi|119719291|ref|YP_919786.1| - 0.13 12.8 3.1 1.2 9.7 0.3 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ISL3 PF14690.6 gi|119719291|ref|YP_919786.1| - 0.2 12.3 0.5 13 6.5 0.2 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Sgf11 PF08209.11 gi|119719291|ref|YP_919786.1| - 0.2 11.2 3.3 0.26 10.9 0.4 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf_C2H2_10 PF18414.1 gi|119719291|ref|YP_919786.1| - 0.45 10.1 5.0 0.62 9.6 0.3 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger A2L_zn_ribbon PF08792.10 gi|119719291|ref|YP_919786.1| - 0.59 9.9 0.1 0.59 9.9 0.1 2.6 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-C2HC_2 PF13913.6 gi|119719291|ref|YP_919786.1| - 0.91 9.5 6.2 0.69 9.9 0.5 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.10 gi|119719291|ref|YP_919786.1| - 1.1 9.4 3.7 4.8 7.4 3.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Cys_rich_CPXG PF14255.6 gi|119719291|ref|YP_919786.1| - 1.6 8.7 3.5 36 4.4 0.0 2.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-H2C2_2 PF13465.6 gi|119719291|ref|YP_919786.1| - 4.2 8.0 6.0 1.5 9.4 0.9 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Gar1 PF04410.14 gi|119719292|ref|YP_919787.1| - 1.4e-07 31.4 0.0 1.6e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|119719292|ref|YP_919787.1| - 0.037 14.1 0.0 0.051 13.7 0.0 1.3 1 0 0 1 1 1 0 PRC-barrel domain Nop PF01798.18 gi|119719293|ref|YP_919788.1| - 6.3e-73 245.0 0.0 1.3e-72 244.0 0.0 1.5 2 0 0 2 2 2 1 snoRNA binding domain, fibrillarin CPSase_L_D3 PF02787.19 gi|119719293|ref|YP_919788.1| - 0.044 14.1 0.3 0.18 12.2 0.1 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Ribosomal_L38e PF01781.18 gi|119719293|ref|YP_919788.1| - 0.09 12.9 1.5 0.14 12.3 0.1 2.0 2 0 0 2 2 2 0 Ribosomal L38e protein family Fibrillarin PF01269.17 gi|119719294|ref|YP_919789.1| - 4.9e-98 326.8 0.2 5.6e-98 326.6 0.2 1.0 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 gi|119719294|ref|YP_919789.1| - 0.00011 22.0 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|119719294|ref|YP_919789.1| - 0.0076 16.0 0.0 0.015 15.0 0.0 1.7 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) LBR_tudor PF09465.10 gi|119719294|ref|YP_919789.1| - 0.032 14.1 0.7 0.066 13.0 0.1 1.8 2 0 0 2 2 2 0 Lamin-B receptor of TUDOR domain HTH_3 PF01381.22 gi|119719295|ref|YP_919790.1| - 5.4e-11 42.4 2.3 6.9e-11 42.0 0.5 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|119719295|ref|YP_919790.1| - 6.3e-09 36.0 0.8 1.9e-08 34.5 0.8 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|119719295|ref|YP_919790.1| - 4.6e-05 23.4 1.0 0.00011 22.1 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|119719295|ref|YP_919790.1| - 0.0024 17.7 0.1 0.0053 16.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|119719295|ref|YP_919790.1| - 0.0035 17.1 0.1 0.015 15.1 0.1 2.0 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|119719295|ref|YP_919790.1| - 0.059 13.5 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|119719295|ref|YP_919790.1| - 0.077 12.8 0.1 0.17 11.7 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain RHH_1 PF01402.21 gi|119719295|ref|YP_919790.1| - 0.97 9.5 3.9 6.6 6.8 1.3 3.4 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family TRM PF02005.16 gi|119719296|ref|YP_919791.1| - 5.7e-92 308.8 0.0 7e-92 308.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|119719296|ref|YP_919791.1| - 1.7e-07 31.2 0.0 2.7e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|119719296|ref|YP_919791.1| - 0.00025 20.8 0.0 0.0004 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|119719296|ref|YP_919791.1| - 0.00045 19.9 0.0 0.00073 19.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.6 gi|119719296|ref|YP_919791.1| - 0.019 15.9 0.0 0.059 14.4 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719296|ref|YP_919791.1| - 0.028 15.1 0.0 0.05 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|119719296|ref|YP_919791.1| - 0.07 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|119719296|ref|YP_919791.1| - 0.081 12.3 0.1 0.12 11.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.17 gi|119719296|ref|YP_919791.1| - 0.087 12.1 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase MTS PF05175.14 gi|119719296|ref|YP_919791.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|119719296|ref|YP_919791.1| - 0.19 11.6 0.0 0.39 10.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain eIF-5_eIF-2B PF01873.17 gi|119719297|ref|YP_919792.1| - 2.7e-30 104.7 0.0 3e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|119719297|ref|YP_919792.1| - 0.0023 17.4 0.6 0.0036 16.8 0.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Elf1 PF05129.13 gi|119719297|ref|YP_919792.1| - 0.0043 17.1 0.5 0.0081 16.2 0.5 1.4 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|119719297|ref|YP_919792.1| - 0.0076 16.6 1.1 0.014 15.8 1.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF35_N PF12172.8 gi|119719297|ref|YP_919792.1| - 0.01 15.7 0.2 0.12 12.3 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_S27e PF01667.17 gi|119719297|ref|YP_919792.1| - 0.013 15.2 0.7 0.024 14.4 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 DUF2387 PF09526.10 gi|119719297|ref|YP_919792.1| - 0.033 14.3 0.7 0.055 13.6 0.7 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ACC PF17848.1 gi|119719297|ref|YP_919792.1| - 0.083 13.0 1.2 4.3 7.5 0.1 2.6 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain IBR PF01485.21 gi|119719297|ref|YP_919792.1| - 0.13 12.5 0.4 0.19 11.9 0.4 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-ribbon_3 PF13248.6 gi|119719297|ref|YP_919792.1| - 0.48 9.9 2.6 14 5.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|119719297|ref|YP_919792.1| - 0.5 10.6 2.4 1.1 9.5 2.4 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_4 PF13717.6 gi|119719297|ref|YP_919792.1| - 0.52 10.3 2.8 4.5 7.3 0.2 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DUF3797 PF12677.7 gi|119719297|ref|YP_919792.1| - 1.7 8.6 5.8 2.7 7.9 0.8 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Peptidase_C92 PF05708.12 gi|119719298|ref|YP_919793.1| - 1e-13 51.8 0.0 1.6e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family NLPC_P60 PF00877.19 gi|119719298|ref|YP_919793.1| - 1.6e-06 28.1 0.0 5.2e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 NlpC/P60 family LRAT PF04970.13 gi|119719298|ref|YP_919793.1| - 0.0029 17.9 0.0 0.0039 17.5 0.0 1.3 1 0 0 1 1 1 1 Lecithin retinol acyltransferase DUF1287 PF06940.11 gi|119719298|ref|YP_919793.1| - 0.1 12.3 0.2 2.2 7.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1287) DSX_dimer PF08828.10 gi|119719298|ref|YP_919793.1| - 0.13 11.9 0.3 0.25 11.0 0.3 1.4 1 0 0 1 1 1 0 Doublesex dimerisation domain Pribosyltran PF00156.27 gi|119719300|ref|YP_919795.1| - 3.5e-27 94.9 0.0 4.9e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119719300|ref|YP_919795.1| - 1.2e-05 24.9 0.0 1.6e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|119719300|ref|YP_919795.1| - 0.0085 15.6 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Colicin PF01024.19 gi|119719300|ref|YP_919795.1| - 0.18 11.7 0.0 0.27 11.1 0.0 1.2 1 0 0 1 1 1 0 Colicin pore forming domain IF-2B PF01008.17 gi|119719301|ref|YP_919796.1| - 1.1e-81 274.2 0.3 1.3e-81 274.0 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family IF-2B PF01008.17 gi|119719302|ref|YP_919797.1| - 2.7e-53 181.0 0.2 3.2e-53 180.8 0.2 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Pribosyltran_N PF13793.6 gi|119719303|ref|YP_919798.1| - 2.3e-16 59.8 0.0 8e-16 58.0 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|119719303|ref|YP_919798.1| - 6.1e-11 42.1 0.2 4.3e-10 39.3 0.1 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|119719303|ref|YP_919798.1| - 2e-09 37.7 0.7 5.1e-08 33.2 0.2 2.4 2 1 1 3 3 3 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.6 gi|119719303|ref|YP_919798.1| - 0.016 14.7 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase UPRTase PF14681.6 gi|119719303|ref|YP_919798.1| - 0.11 11.9 0.1 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase RNase_P_p30 PF01876.16 gi|119719305|ref|YP_919800.1| - 1.2e-15 57.5 0.0 1.5e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Bin3 PF06859.12 gi|119719305|ref|YP_919800.1| - 0.037 14.7 0.0 0.067 13.8 0.0 1.4 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) RNA_binding PF01877.17 gi|119719306|ref|YP_919801.1| - 1.6e-35 121.9 0.4 2e-35 121.6 0.4 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.17 gi|119719307|ref|YP_919802.1| - 9.8e-64 214.6 2.7 1.3e-63 214.2 2.7 1.1 1 0 0 1 1 1 1 Ribosomal L15 NOG1_N PF17835.1 gi|119719308|ref|YP_919803.1| - 8.1e-27 94.1 0.1 1.3e-26 93.5 0.1 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|119719308|ref|YP_919803.1| - 2.7e-19 69.3 0.0 4.6e-19 68.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|119719308|ref|YP_919803.1| - 1.4e-17 63.1 0.0 3.3e-17 62.0 0.0 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|119719308|ref|YP_919803.1| - 2.9e-11 43.1 0.0 8.7e-11 41.6 0.0 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|119719308|ref|YP_919803.1| - 1.5e-06 28.2 0.1 3.1e-06 27.2 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|119719308|ref|YP_919803.1| - 0.00023 21.1 0.5 0.94 9.4 0.0 2.7 2 1 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|119719308|ref|YP_919803.1| - 0.0026 17.2 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|119719308|ref|YP_919803.1| - 0.0049 16.5 0.1 0.045 13.3 0.1 2.2 1 1 0 1 1 1 1 Ras family Dynamin_N PF00350.23 gi|119719308|ref|YP_919803.1| - 0.0067 16.5 0.3 2.1 8.4 0.0 2.4 1 1 1 2 2 2 2 Dynamin family AAA_18 PF13238.6 gi|119719308|ref|YP_919803.1| - 0.13 12.9 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Proteasome PF00227.26 gi|119719309|ref|YP_919804.1| - 8.8e-55 185.1 0.3 1.1e-54 184.8 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit DNA_pol_B PF00136.21 gi|119719310|ref|YP_919805.1| - 6.8e-69 232.7 0.0 8.8e-69 232.4 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|119719310|ref|YP_919805.1| - 3.3e-39 135.0 0.0 4.4e-38 131.3 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|119719310|ref|YP_919805.1| - 3.3e-10 40.0 0.1 6e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|119719310|ref|YP_919805.1| - 1.2e-07 31.8 0.0 3.7e-07 30.3 0.0 1.8 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|119719310|ref|YP_919805.1| - 0.047 12.6 0.1 0.085 11.7 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral PhoU_div PF01865.16 gi|119719311|ref|YP_919806.1| - 7.4e-07 28.7 2.4 0.0015 18.0 0.1 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF47 DNA_meth_N PF18284.1 gi|119719311|ref|YP_919806.1| - 0.0086 16.0 0.2 0.15 11.9 0.2 2.3 2 0 0 2 2 2 1 DNA methylase N-terminal domain DASH_Duo1 PF08651.10 gi|119719311|ref|YP_919806.1| - 0.0089 15.8 2.9 0.011 15.5 1.0 2.2 2 1 0 2 2 2 1 DASH complex subunit Duo1 Molydop_binding PF01568.21 gi|119719312|ref|YP_919807.1| - 8.6e-05 22.5 0.0 0.0002 21.3 0.0 1.6 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|119719312|ref|YP_919807.1| - 0.0032 17.6 0.0 0.0051 17.0 0.0 1.5 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain DUF87 PF01935.17 gi|119719314|ref|YP_919809.1| - 3.3e-13 50.3 0.0 5.8e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|119719314|ref|YP_919809.1| - 5.3e-07 28.9 0.0 3.1e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|119719314|ref|YP_919809.1| - 5.6e-05 22.6 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF853 PF05872.12 gi|119719314|ref|YP_919809.1| - 0.00018 20.2 0.0 0.00028 19.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) T2SSE PF00437.20 gi|119719314|ref|YP_919809.1| - 0.00068 18.8 0.1 0.0011 18.0 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.29 gi|119719314|ref|YP_919809.1| - 0.003 17.3 0.3 0.15 11.8 0.1 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_10 PF12846.7 gi|119719314|ref|YP_919809.1| - 0.0051 15.8 0.0 0.37 9.7 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|119719314|ref|YP_919809.1| - 0.014 15.6 0.7 0.064 13.5 0.2 2.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|119719314|ref|YP_919809.1| - 0.028 14.8 0.1 0.066 13.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|119719314|ref|YP_919809.1| - 0.044 13.3 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|119719314|ref|YP_919809.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_16 PF13191.6 gi|119719314|ref|YP_919809.1| - 0.14 12.5 2.0 0.24 11.7 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|119719314|ref|YP_919809.1| - 0.16 12.4 0.1 1.5 9.3 0.1 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|119719314|ref|YP_919809.1| - 0.17 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_6 PF12774.7 gi|119719314|ref|YP_919809.1| - 0.2 10.6 0.0 0.32 9.9 0.0 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region tRNA_anti-codon PF01336.25 gi|119719315|ref|YP_919810.1| - 2e-08 34.1 0.5 2e-08 34.1 0.5 1.6 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain HTH_Tnp_ISL3 PF13542.6 gi|119719317|ref|YP_919812.1| - 0.096 12.1 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 SelB-wing_2 PF09106.11 gi|119719317|ref|YP_919812.1| - 0.12 12.6 0.0 0.28 11.4 0.0 1.6 2 0 0 2 2 2 0 Elongation factor SelB, winged helix CBS PF00571.28 gi|119719318|ref|YP_919813.1| - 1.9e-42 143.5 17.4 1.2e-11 44.9 0.4 4.4 4 1 0 4 4 4 4 CBS domain UbiD PF01977.16 gi|119719321|ref|YP_919816.1| - 5.3e-91 305.5 0.0 6.6e-91 305.2 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Spt5-NGN PF03439.13 gi|119719322|ref|YP_919817.1| - 8e-21 73.7 0.0 1.2e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|119719322|ref|YP_919817.1| - 2.1e-07 30.7 0.9 7.6e-07 28.9 0.9 2.0 1 0 0 1 1 1 1 KOW motif NusG PF02357.19 gi|119719322|ref|YP_919817.1| - 0.083 13.4 0.0 1.6 9.3 0.0 2.3 1 1 0 1 1 1 0 Transcription termination factor nusG SecE PF00584.20 gi|119719323|ref|YP_919818.1| - 0.0012 18.8 2.2 0.0033 17.3 0.1 2.0 2 0 0 2 2 2 1 SecE/Sec61-gamma subunits of protein translocation complex Gram_pos_anchor PF00746.21 gi|119719323|ref|YP_919818.1| - 3.7 7.6 6.2 1.1 9.2 0.2 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif OTCace PF00185.24 gi|119719324|ref|YP_919819.1| - 4.1e-49 166.7 0.0 6e-49 166.1 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|119719324|ref|YP_919819.1| - 1.9e-43 148.0 0.0 2.7e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain tRNA-synt_2b PF00587.25 gi|119719325|ref|YP_919820.1| - 9.9e-33 113.6 0.0 1.7e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|119719325|ref|YP_919820.1| - 9.9e-19 67.6 6.5 2.3e-18 66.4 6.5 1.6 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain APG6_N PF17675.1 gi|119719325|ref|YP_919820.1| - 0.27 11.8 5.6 0.69 10.4 5.6 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region HalX PF08663.10 gi|119719325|ref|YP_919820.1| - 1.5 9.2 7.5 5.5 7.4 0.1 2.5 1 1 1 2 2 2 0 HalX domain eIF-5a PF01287.20 gi|119719326|ref|YP_919821.1| - 1.7e-12 47.2 0.2 2.6e-12 46.7 0.2 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|119719326|ref|YP_919821.1| - 6.9e-07 29.2 0.2 1.3e-06 28.3 0.2 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain YcgR_2 PF12945.7 gi|119719326|ref|YP_919821.1| - 0.012 15.7 0.2 0.92 9.7 0.0 2.6 1 1 1 2 2 2 0 Flagellar protein YcgR EFP PF01132.20 gi|119719326|ref|YP_919821.1| - 0.033 14.2 0.3 0.061 13.4 0.3 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain CTP_transf_like PF01467.26 gi|119719327|ref|YP_919822.1| - 2.6e-08 34.2 0.0 3.1e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like Herpes_BMRF2 PF04633.12 gi|119719328|ref|YP_919823.1| - 0.015 14.6 3.3 0.015 14.5 3.3 1.1 1 0 0 1 1 1 0 Herpesvirus BMRF2 protein Glycos_transf_4 PF00953.21 gi|119719329|ref|YP_919824.1| - 9.4e-31 107.0 18.7 2e-30 105.9 18.7 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 4 DS PF01916.17 gi|119719330|ref|YP_919825.1| - 3.2e-82 276.0 0.0 3.7e-82 275.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Spt4 PF06093.13 gi|119719331|ref|YP_919826.1| - 4.2e-14 52.4 0.2 4.9e-14 52.2 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.6 gi|119719331|ref|YP_919826.1| - 7e-05 22.1 1.4 9.8e-05 21.6 1.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RRN7 PF11781.8 gi|119719331|ref|YP_919826.1| - 0.00074 19.1 0.8 0.00074 19.1 0.8 1.6 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|119719331|ref|YP_919826.1| - 0.0054 16.7 0.6 0.0079 16.2 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119719331|ref|YP_919826.1| - 0.01 15.5 0.3 0.014 15.1 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|119719331|ref|YP_919826.1| - 0.022 15.5 0.3 0.03 15.1 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbon family DUF35_N PF12172.8 gi|119719331|ref|YP_919826.1| - 0.027 14.3 1.5 0.05 13.5 1.5 1.4 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|119719331|ref|YP_919826.1| - 0.029 13.9 2.7 0.048 13.2 0.2 2.2 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2072 PF09845.9 gi|119719331|ref|YP_919826.1| - 0.041 14.2 0.7 0.16 12.2 0.6 1.7 1 1 0 2 2 2 0 Zn-ribbon containing protein YhfH PF14149.6 gi|119719331|ref|YP_919826.1| - 0.16 12.0 3.1 0.98 9.5 0.5 2.2 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.10 gi|119719331|ref|YP_919826.1| - 0.32 11.2 2.7 5.1 7.3 3.0 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF2256 PF10013.9 gi|119719331|ref|YP_919826.1| - 0.98 9.6 6.5 2.3 8.4 0.5 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) SHS2_Rpb7-N PF03876.17 gi|119719332|ref|YP_919827.1| - 1.8e-17 63.4 0.0 3.5e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|119719332|ref|YP_919827.1| - 3.3e-11 43.3 3.1 3.3e-11 43.3 3.1 1.9 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|119719332|ref|YP_919827.1| - 0.082 13.1 0.1 0.16 12.2 0.0 1.5 2 0 0 2 2 2 0 RNA polymerase III subunit Rpc25 DNA_methylase PF00145.17 gi|119719333|ref|YP_919828.1| - 2.3e-51 175.1 0.0 1.1e-33 117.0 0.0 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|119719333|ref|YP_919828.1| - 0.018 14.6 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|119719333|ref|YP_919828.1| - 0.026 14.3 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Mis12 PF05859.12 gi|119719334|ref|YP_919829.1| - 0.049 13.7 0.4 0.066 13.3 0.4 1.2 1 0 0 1 1 1 0 Mis12 protein Get5_C PF18514.1 gi|119719335|ref|YP_919830.1| - 0.064 13.0 0.3 0.67 9.7 0.1 2.4 2 0 0 2 2 2 0 Get5 C-terminal domain DUF2122 PF09895.9 gi|119719336|ref|YP_919831.1| - 8.7e-32 109.7 0.1 1.1e-30 106.1 0.1 2.0 2 0 0 2 2 2 1 RecB-family nuclease (DUF2122) SpoU_methylase PF00588.19 gi|119719336|ref|YP_919831.1| - 0.0014 18.8 0.0 0.0017 18.5 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Ribosomal_L37e PF01907.19 gi|119719337|ref|YP_919832.1| - 5.5e-24 84.1 12.6 6.2e-24 83.9 12.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e NOB1_Zn_bind PF08772.11 gi|119719337|ref|YP_919832.1| - 0.0071 16.5 1.5 0.0084 16.2 1.5 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.8 gi|119719337|ref|YP_919832.1| - 0.0099 15.7 5.9 0.018 14.9 5.9 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.13 gi|119719337|ref|YP_919832.1| - 0.063 13.0 1.5 0.063 13.0 1.5 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|119719337|ref|YP_919832.1| - 0.62 9.6 4.4 2.2 7.8 4.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|119719337|ref|YP_919832.1| - 1.5 8.6 7.4 13 5.6 0.6 2.3 1 1 1 2 2 2 0 Rubredoxin metal binding domain LSM PF01423.22 gi|119719338|ref|YP_919833.1| - 5.3e-23 80.5 0.3 5.8e-23 80.4 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|119719338|ref|YP_919833.1| - 0.034 14.3 0.0 0.036 14.2 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF150_C PF17384.2 gi|119719338|ref|YP_919833.1| - 0.052 13.7 0.1 0.065 13.4 0.1 1.3 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Ribosomal_S6e PF01092.19 gi|119719339|ref|YP_919834.1| - 1.6e-36 125.1 0.0 1.8e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e eIF-1a PF01176.19 gi|119719341|ref|YP_919836.1| - 4.5e-22 77.6 0.0 5.7e-22 77.3 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RsgA_N PF16745.5 gi|119719341|ref|YP_919836.1| - 0.0052 16.5 0.1 0.0083 15.9 0.1 1.3 1 0 0 1 1 1 1 RsgA N-terminal domain Renin_r PF07850.14 gi|119719341|ref|YP_919836.1| - 0.03 14.9 0.0 0.042 14.4 0.0 1.2 1 0 0 1 1 1 0 Renin receptor-like protein Thioredoxin PF00085.20 gi|119719342|ref|YP_919837.1| - 4.2e-20 71.7 0.1 4.7e-20 71.5 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 gi|119719342|ref|YP_919837.1| - 5.3e-08 32.9 0.2 7.1e-08 32.5 0.2 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|119719342|ref|YP_919837.1| - 7e-08 32.9 0.9 2.6e-07 31.1 0.9 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|119719342|ref|YP_919837.1| - 1.5e-05 25.2 0.8 0.00028 21.2 0.6 2.0 1 1 1 2 2 2 2 Thioredoxin-like DIM1 PF02966.16 gi|119719342|ref|YP_919837.1| - 0.00021 21.1 0.1 0.00024 20.9 0.1 1.0 1 0 0 1 1 1 1 Mitosis protein DIM1 AhpC-TSA PF00578.21 gi|119719342|ref|YP_919837.1| - 0.00027 20.8 0.4 0.0011 18.9 0.4 1.7 1 1 0 1 1 1 1 AhpC/TSA family DUF5091 PF17012.5 gi|119719342|ref|YP_919837.1| - 0.005 17.1 0.1 0.0064 16.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5091) Redoxin PF08534.10 gi|119719342|ref|YP_919837.1| - 0.023 14.4 0.3 0.042 13.6 0.3 1.4 1 1 0 1 1 1 0 Redoxin OST3_OST6 PF04756.13 gi|119719342|ref|YP_919837.1| - 0.023 14.0 0.0 0.027 13.8 0.0 1.0 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|119719342|ref|YP_919837.1| - 0.025 14.5 0.0 0.029 14.3 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE XPG_I PF00867.18 gi|119719343|ref|YP_919838.1| - 4.3e-22 78.3 0.0 9.4e-22 77.2 0.0 1.6 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|119719343|ref|YP_919838.1| - 9.4e-16 58.1 0.0 1.6e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|119719343|ref|YP_919838.1| - 4.6e-06 27.2 0.1 4e-05 24.1 0.0 2.4 3 0 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|119719343|ref|YP_919838.1| - 0.0084 16.0 0.1 0.013 15.4 0.1 1.5 1 1 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain MotCF PF09158.10 gi|119719343|ref|YP_919838.1| - 0.1 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage T4 MotA, C-terminal DNA_ligase_A_M PF01068.21 gi|119719344|ref|YP_919839.1| - 3.8e-48 163.9 0.0 6.2e-48 163.1 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|119719344|ref|YP_919839.1| - 9.5e-23 81.4 0.0 1.8e-19 70.7 0.0 3.0 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|119719344|ref|YP_919839.1| - 7.3e-19 68.2 0.1 1.6e-18 67.1 0.1 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Lactamase_B_2 PF12706.7 gi|119719345|ref|YP_919840.1| - 6.9e-07 29.0 0.0 9.1e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119719345|ref|YP_919840.1| - 1.8e-06 27.9 0.0 5.8e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain SRP54 PF00448.22 gi|119719346|ref|YP_919841.1| - 6.2e-70 234.8 0.2 9.4e-70 234.2 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|119719346|ref|YP_919841.1| - 4.4e-06 26.5 0.5 7.6e-06 25.8 0.5 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719346|ref|YP_919841.1| - 0.00012 22.5 0.1 0.00048 20.6 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain CbiA PF01656.23 gi|119719346|ref|YP_919841.1| - 0.00013 22.1 0.0 0.00033 20.7 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|119719346|ref|YP_919841.1| - 0.00042 19.4 0.1 0.0009 18.3 0.1 1.6 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54_N PF02881.19 gi|119719346|ref|YP_919841.1| - 0.0015 18.7 0.6 0.0033 17.6 0.6 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA PF00004.29 gi|119719346|ref|YP_919841.1| - 0.0023 18.4 0.0 0.0068 16.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|119719346|ref|YP_919841.1| - 0.0024 17.6 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|119719346|ref|YP_919841.1| - 0.0035 17.3 0.1 0.068 13.1 0.1 2.3 1 1 0 1 1 1 1 NTPase cobW PF02492.19 gi|119719346|ref|YP_919841.1| - 0.0047 16.5 0.0 0.025 14.1 0.0 2.1 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|119719346|ref|YP_919841.1| - 0.0057 16.5 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.27 gi|119719346|ref|YP_919841.1| - 0.0088 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|119719346|ref|YP_919841.1| - 0.009 16.3 0.1 0.022 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain B12-binding PF02310.19 gi|119719346|ref|YP_919841.1| - 0.018 15.1 0.1 0.042 13.9 0.1 1.6 1 1 0 1 1 1 0 B12 binding domain 3HCDH_RFF PF18321.1 gi|119719346|ref|YP_919841.1| - 0.02 15.3 0.3 0.27 11.7 0.1 2.7 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ResIII PF04851.15 gi|119719346|ref|YP_919841.1| - 0.021 14.8 0.0 0.18 11.8 0.0 2.0 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_17 PF13207.6 gi|119719346|ref|YP_919841.1| - 0.024 15.1 0.0 0.057 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|119719346|ref|YP_919841.1| - 0.035 14.2 0.1 0.13 12.3 0.1 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_31 PF13614.6 gi|119719346|ref|YP_919841.1| - 0.043 13.7 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119719346|ref|YP_919841.1| - 0.05 14.0 0.0 0.19 12.2 0.0 1.9 1 1 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 gi|119719346|ref|YP_919841.1| - 0.085 13.1 0.0 0.24 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|119719346|ref|YP_919841.1| - 0.1 11.8 0.0 1.6 7.9 0.0 2.1 2 0 0 2 2 2 0 Anion-transporting ATPase Thymidylate_kin PF02223.17 gi|119719346|ref|YP_919841.1| - 0.1 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase ABC_tran PF00005.27 gi|119719346|ref|YP_919841.1| - 0.12 12.9 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 gi|119719346|ref|YP_919841.1| - 0.13 12.3 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|119719346|ref|YP_919841.1| - 0.14 12.2 0.0 0.34 11.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_7 PF12775.7 gi|119719346|ref|YP_919841.1| - 0.15 11.6 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Prefoldin PF02996.17 gi|119719347|ref|YP_919842.1| - 1.7e-25 89.3 3.6 1.9e-25 89.1 3.6 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|119719347|ref|YP_919842.1| - 0.00025 20.9 8.4 0.012 15.6 1.0 2.1 2 0 0 2 2 2 2 Prefoldin subunit KNOX2 PF03791.13 gi|119719347|ref|YP_919842.1| - 0.00092 18.7 1.0 0.26 10.8 0.1 2.5 2 0 0 2 2 2 2 KNOX2 domain DUF4055 PF13264.6 gi|119719347|ref|YP_919842.1| - 0.015 15.4 0.9 2.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4055) Peripla_BP_2 PF01497.18 gi|119719347|ref|YP_919842.1| - 0.026 14.1 0.2 0.042 13.4 0.2 1.4 1 1 0 1 1 1 0 Periplasmic binding protein dCache_3 PF14827.6 gi|119719347|ref|YP_919842.1| - 0.066 12.9 0.2 0.066 12.9 0.2 1.9 2 0 0 2 2 2 0 Double sensory domain of two-component sensor kinase DUF148 PF02520.17 gi|119719347|ref|YP_919842.1| - 0.081 13.0 4.0 3.4 7.8 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF148 DUF1759 PF03564.15 gi|119719347|ref|YP_919842.1| - 0.11 12.4 1.0 0.65 9.9 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) ParB PF08775.10 gi|119719347|ref|YP_919842.1| - 0.14 12.6 2.5 1.1 9.8 0.1 2.1 2 0 0 2 2 2 0 ParB family FAA_hydrolase_N PF09298.11 gi|119719347|ref|YP_919842.1| - 0.15 12.2 0.9 0.39 10.9 0.1 1.8 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal DUF1664 PF07889.12 gi|119719347|ref|YP_919842.1| - 0.26 11.3 4.2 0.56 10.2 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) FmiP_Thoc5 PF09766.9 gi|119719347|ref|YP_919842.1| - 0.78 9.0 5.1 3.1 7.0 0.5 2.1 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 Ribosomal_L18A PF01775.17 gi|119719348|ref|YP_919843.1| - 8.5e-09 35.6 0.1 1.2e-08 35.0 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF1801 PF08818.11 gi|119719348|ref|YP_919843.1| - 0.05 14.1 0.0 0.06 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DU1801) CarS-like PF01864.17 gi|119719350|ref|YP_919845.1| - 7.5e-43 146.5 3.1 5.9e-42 143.6 3.1 2.0 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|119719350|ref|YP_919845.1| - 3.3e-05 23.8 0.6 3.3e-05 23.8 0.6 2.6 3 0 0 3 3 3 1 Cytidylyltransferase family 5TM-5TMR_LYT PF07694.12 gi|119719350|ref|YP_919845.1| - 0.075 12.5 7.8 0.022 14.3 4.3 1.8 2 0 0 2 2 2 0 5TMR of 5TMR-LYT DUF1110 PF06533.12 gi|119719351|ref|YP_919846.1| - 0.029 14.3 0.2 0.04 13.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1110) TetR_C_29 PF17938.1 gi|119719351|ref|YP_919846.1| - 0.035 14.2 0.0 0.053 13.6 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Phage_holin_1 PF04531.13 gi|119719351|ref|YP_919846.1| - 0.048 14.2 0.1 0.1 13.2 0.0 1.6 2 0 0 2 2 2 0 Bacteriophage holin MazE_antitoxin PF04014.18 gi|119719352|ref|YP_919847.1| - 2.1e-07 30.7 0.2 0.00016 21.5 0.1 2.2 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin CDC48_N PF02359.18 gi|119719352|ref|YP_919847.1| - 0.0027 17.8 0.0 0.0036 17.4 0.0 1.2 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain PrlF_antitoxin PF15937.5 gi|119719352|ref|YP_919847.1| - 0.046 14.2 0.2 0.22 12.0 0.0 1.9 2 0 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin AbrB-like PF14250.6 gi|119719352|ref|YP_919847.1| - 0.1 12.7 0.0 0.5 10.5 0.0 1.9 2 0 0 2 2 2 0 AbrB-like transcriptional regulator AKNA PF12443.8 gi|119719353|ref|YP_919848.1| - 0.0057 17.3 0.0 0.008 16.8 0.0 1.2 1 0 0 1 1 1 1 AT-hook-containing transcription factor Cons_hypoth95 PF03602.15 gi|119719353|ref|YP_919848.1| - 0.11 12.2 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF711 PF05167.12 gi|119719354|ref|YP_919849.1| - 3.2e-36 125.1 0.0 3.5e-33 115.1 0.0 2.1 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) LppA PF16708.5 gi|119719354|ref|YP_919849.1| - 0.16 11.9 0.1 0.28 11.1 0.1 1.4 1 0 0 1 1 1 0 Lipoprotein confined to pathogenic Mycobacterium AAA_17 PF13207.6 gi|119719355|ref|YP_919850.1| - 0.00012 22.5 0.0 0.00027 21.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Nuc_deoxyrib_tr PF05014.15 gi|119719355|ref|YP_919850.1| - 0.00033 20.7 0.0 0.0021 18.1 0.0 2.0 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase T2SSE PF00437.20 gi|119719356|ref|YP_919851.1| - 1e-46 159.2 0.0 2.6e-46 157.9 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|119719356|ref|YP_919851.1| - 0.011 16.2 0.0 0.03 14.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_21 PF13304.6 gi|119719356|ref|YP_919851.1| - 0.015 15.2 0.1 0.042 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119719356|ref|YP_919851.1| - 0.025 14.3 0.0 0.055 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|119719356|ref|YP_919851.1| - 0.031 14.5 0.8 0.25 11.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|119719356|ref|YP_919851.1| - 0.036 14.1 0.0 0.11 12.5 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|119719356|ref|YP_919851.1| - 0.098 12.4 0.7 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 gi|119719356|ref|YP_919851.1| - 0.11 12.9 0.0 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|119719356|ref|YP_919851.1| - 1.2 9.7 4.2 0.49 10.9 0.2 2.1 2 0 0 2 2 2 0 AAA domain AdoMet_dc PF02675.15 gi|119719358|ref|YP_919853.1| - 1e-36 125.4 0.0 1.2e-36 125.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DSHCT PF08148.12 gi|119719360|ref|YP_919855.1| - 0.0015 18.2 0.2 0.0018 18.0 0.2 1.0 1 0 0 1 1 1 1 DSHCT (NUC185) domain Mis12 PF05859.12 gi|119719360|ref|YP_919855.1| - 0.065 13.3 0.2 0.088 12.9 0.2 1.2 1 0 0 1 1 1 0 Mis12 protein AAA_18 PF13238.6 gi|119719361|ref|YP_919856.1| - 1.2e-22 80.8 0.0 1.6e-22 80.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|119719361|ref|YP_919856.1| - 1.3e-05 25.6 0.0 2.3e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|119719361|ref|YP_919856.1| - 6.2e-05 23.4 0.1 0.0001 22.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|119719361|ref|YP_919856.1| - 8.4e-05 22.6 0.1 0.00024 21.1 0.0 1.7 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|119719361|ref|YP_919856.1| - 0.0006 20.0 0.2 0.029 14.5 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|119719361|ref|YP_919856.1| - 0.00098 19.4 0.0 0.0018 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|119719361|ref|YP_919856.1| - 0.0014 18.5 0.6 0.0042 17.0 0.2 1.8 1 1 0 1 1 1 1 NTPase SKI PF01202.22 gi|119719361|ref|YP_919856.1| - 0.0014 18.7 0.4 0.013 15.6 0.4 2.1 1 1 0 1 1 1 1 Shikimate kinase KTI12 PF08433.10 gi|119719361|ref|YP_919856.1| - 0.0024 17.4 0.0 0.0032 16.9 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NACHT PF05729.12 gi|119719361|ref|YP_919856.1| - 0.0027 17.7 0.3 0.0059 16.5 0.1 1.6 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|119719361|ref|YP_919856.1| - 0.0043 16.8 0.0 0.0058 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|119719361|ref|YP_919856.1| - 0.0046 17.4 0.4 0.022 15.2 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119719361|ref|YP_919856.1| - 0.0053 17.0 0.1 0.01 16.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|119719361|ref|YP_919856.1| - 0.0055 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|119719361|ref|YP_919856.1| - 0.0066 16.8 0.0 0.0098 16.3 0.0 1.4 1 0 0 1 1 1 1 RNA helicase Cytidylate_kin2 PF13189.6 gi|119719361|ref|YP_919856.1| - 0.0083 16.3 0.0 0.0094 16.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase-like family RuvB_N PF05496.12 gi|119719361|ref|YP_919856.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|119719361|ref|YP_919856.1| - 0.012 15.3 0.2 0.022 14.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|119719361|ref|YP_919856.1| - 0.013 15.2 1.0 0.14 11.8 0.2 2.4 2 1 1 3 3 3 0 Cytidylate kinase AAA_7 PF12775.7 gi|119719361|ref|YP_919856.1| - 0.018 14.5 0.2 0.039 13.5 0.1 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region APS_kinase PF01583.20 gi|119719361|ref|YP_919856.1| - 0.018 14.9 0.1 0.038 13.9 0.1 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase dNK PF01712.19 gi|119719361|ref|YP_919856.1| - 0.024 14.5 0.1 0.89 9.4 0.1 2.1 1 1 1 2 2 2 0 Deoxynucleoside kinase CbiA PF01656.23 gi|119719361|ref|YP_919856.1| - 0.027 14.5 0.3 0.037 14.1 0.3 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activ_2 PF14532.6 gi|119719361|ref|YP_919856.1| - 0.04 14.0 0.0 0.057 13.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain TIP49 PF06068.13 gi|119719361|ref|YP_919856.1| - 0.043 13.0 0.0 0.043 13.0 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_14 PF13173.6 gi|119719361|ref|YP_919856.1| - 0.059 13.4 0.0 0.081 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|119719361|ref|YP_919856.1| - 0.059 13.1 0.1 0.094 12.4 0.1 1.4 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|119719361|ref|YP_919856.1| - 0.062 12.5 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PRK PF00485.18 gi|119719361|ref|YP_919856.1| - 0.063 13.0 0.0 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ArsA_ATPase PF02374.15 gi|119719361|ref|YP_919856.1| - 0.071 12.3 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|119719361|ref|YP_919856.1| - 0.075 12.3 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin ParA PF10609.9 gi|119719361|ref|YP_919856.1| - 0.081 12.4 0.3 0.33 10.4 0.5 1.8 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase Sigma54_activat PF00158.26 gi|119719361|ref|YP_919856.1| - 0.083 12.6 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|119719361|ref|YP_919856.1| - 0.089 12.2 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MeaB PF03308.16 gi|119719361|ref|YP_919856.1| - 0.11 11.5 0.1 0.2 10.6 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CoaE PF01121.20 gi|119719361|ref|YP_919856.1| - 0.11 12.2 0.4 0.19 11.4 0.1 1.5 1 1 0 1 1 1 0 Dephospho-CoA kinase MMR_HSR1 PF01926.23 gi|119719361|ref|YP_919856.1| - 0.13 12.4 0.2 0.27 11.3 0.2 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.15 gi|119719361|ref|YP_919856.1| - 0.14 12.0 0.1 0.27 11.1 0.1 1.4 1 1 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|119719361|ref|YP_919856.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.6 gi|119719361|ref|YP_919856.1| - 0.23 11.8 0.6 0.49 10.7 0.4 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|119719361|ref|YP_919856.1| - 0.24 10.9 1.1 0.41 10.2 1.1 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119719361|ref|YP_919856.1| - 0.34 10.5 1.3 0.45 10.1 0.4 1.7 2 1 0 2 2 1 0 SRP54-type protein, GTPase domain T2SSF PF00482.23 gi|119719362|ref|YP_919857.1| - 8.4e-23 80.7 1.5 1.5e-13 50.8 0.0 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Beta-Casp PF10996.8 gi|119719363|ref|YP_919858.1| - 7.9e-16 58.3 0.0 1.4e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|119719363|ref|YP_919858.1| - 9.7e-14 51.1 0.0 1.7e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|119719363|ref|YP_919858.1| - 4.8e-11 43.0 0.2 1.4e-10 41.5 0.2 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|119719363|ref|YP_919858.1| - 1.5e-07 31.0 0.0 2.8e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|119719363|ref|YP_919858.1| - 3.2e-07 30.1 0.0 7.1e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119719363|ref|YP_919858.1| - 4.5e-06 26.7 0.0 1.4e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HSP20 PF00011.21 gi|119719364|ref|YP_919859.1| - 2.6e-14 53.2 2.1 1.2e-12 47.9 2.1 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|119719364|ref|YP_919859.1| - 6.5e-09 35.2 0.0 1.7e-08 33.9 0.0 1.7 1 1 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|119719364|ref|YP_919859.1| - 0.0044 17.4 0.0 0.0071 16.7 0.0 1.2 1 0 0 1 1 1 1 PIH1 CS-like domain CS PF04969.16 gi|119719364|ref|YP_919859.1| - 0.019 16.0 0.5 0.033 15.2 0.5 1.5 1 0 0 1 1 1 0 CS domain DPCD PF14913.6 gi|119719364|ref|YP_919859.1| - 0.065 12.6 0.3 0.065 12.6 0.3 1.8 2 0 0 2 2 2 0 DPCD protein family Ribosomal_S24e PF01282.19 gi|119719365|ref|YP_919860.1| - 4.8e-24 84.1 0.0 6.6e-24 83.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|119719366|ref|YP_919861.1| - 4.3e-14 52.4 3.3 5.1e-14 52.2 3.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|119719366|ref|YP_919861.1| - 4.7e-05 23.3 3.2 6.1e-05 22.9 3.2 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119719366|ref|YP_919861.1| - 0.00014 21.7 0.8 0.00015 21.6 0.8 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|119719366|ref|YP_919861.1| - 0.0093 15.9 3.7 0.018 14.9 3.7 1.5 1 0 0 1 1 1 1 SprT-like zinc ribbon domain zf-piccolo PF05715.13 gi|119719366|ref|YP_919861.1| - 0.0096 16.0 0.1 0.0099 16.0 0.1 1.1 1 0 0 1 1 1 1 Piccolo Zn-finger Nudix_N_2 PF14803.6 gi|119719366|ref|YP_919861.1| - 0.0097 15.8 4.9 0.03 14.2 4.9 1.8 1 1 0 1 1 1 1 Nudix N-terminal YhfH PF14149.6 gi|119719366|ref|YP_919861.1| - 0.013 15.5 2.6 0.039 13.9 0.2 2.2 2 0 0 2 2 2 0 YhfH-like protein RNA_POL_M_15KD PF02150.16 gi|119719366|ref|YP_919861.1| - 0.016 15.1 0.3 0.036 13.9 0.3 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Ribosomal_L37ae PF01780.19 gi|119719366|ref|YP_919861.1| - 0.025 14.7 1.4 0.032 14.3 1.4 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family Lar_restr_allev PF14354.6 gi|119719366|ref|YP_919861.1| - 0.026 14.9 1.4 0.037 14.4 1.4 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L37e PF01907.19 gi|119719366|ref|YP_919861.1| - 0.028 14.6 3.9 0.04 14.1 3.9 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e DUF2387 PF09526.10 gi|119719366|ref|YP_919861.1| - 0.1 12.8 1.0 0.14 12.4 1.0 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf_UBZ PF18439.1 gi|119719366|ref|YP_919861.1| - 0.12 12.0 2.5 0.35 10.5 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|119719366|ref|YP_919861.1| - 0.13 12.4 3.5 0.37 10.9 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HalOD2 PF18547.1 gi|119719366|ref|YP_919861.1| - 0.14 12.1 3.3 1.8 8.5 0.6 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 zf-RanBP PF00641.18 gi|119719366|ref|YP_919861.1| - 0.14 11.5 3.7 0.9 8.9 0.4 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others VWA_3_C PF18571.1 gi|119719366|ref|YP_919861.1| - 0.17 11.7 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A C-terminal domain zf-ribbon_3 PF13248.6 gi|119719366|ref|YP_919861.1| - 0.21 11.1 7.0 0.26 10.8 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719366|ref|YP_919861.1| - 0.22 11.3 6.1 0.67 9.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zn-ribbon_14 PF16503.5 gi|119719366|ref|YP_919861.1| - 0.96 9.0 4.8 5.5 6.6 0.1 2.1 2 0 0 2 2 2 0 Zinc-ribbon Mu-like_Com PF10122.9 gi|119719366|ref|YP_919861.1| - 1.6 8.2 7.3 0.12 11.9 1.0 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com TF_Zn_Ribbon PF08271.12 gi|119719366|ref|YP_919861.1| - 2 8.0 7.3 4.9 6.7 2.0 2.8 2 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|119719366|ref|YP_919861.1| - 2.9 7.7 9.4 2.7 7.8 1.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Peptidase_M22 PF00814.25 gi|119719369|ref|YP_919864.1| - 6.1e-80 268.8 0.0 7.2e-80 268.6 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family BcrAD_BadFG PF01869.20 gi|119719369|ref|YP_919864.1| - 0.0072 15.9 0.0 0.082 12.4 0.0 2.0 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DUF348 PF03990.14 gi|119719369|ref|YP_919864.1| - 0.058 13.1 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 G5-linked-Ubiquitin-like domain Pkinase PF00069.25 gi|119719370|ref|YP_919865.1| - 5.5e-11 42.3 0.0 7.5e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|119719370|ref|YP_919865.1| - 1.1e-08 34.8 0.0 1.8e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|119719370|ref|YP_919865.1| - 3.3e-08 33.8 0.2 0.0018 18.3 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|119719370|ref|YP_919865.1| - 3e-05 23.5 0.0 0.00041 19.8 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|119719370|ref|YP_919865.1| - 0.00011 21.6 0.0 0.00014 21.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase NMD3 PF04981.13 gi|119719371|ref|YP_919866.1| - 1e-43 149.6 0.0 1.4e-43 149.2 0.0 1.2 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|119719371|ref|YP_919866.1| - 0.015 15.3 2.1 0.11 12.5 1.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon mCpol PF18182.1 gi|119719371|ref|YP_919866.1| - 0.041 14.2 0.0 0.081 13.3 0.0 1.5 1 0 0 1 1 1 0 minimal CRISPR polymerase domain zf-NADH-PPase PF09297.11 gi|119719371|ref|YP_919866.1| - 0.045 13.4 3.8 0.66 9.7 0.7 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain 2CSK_N PF08521.10 gi|119719371|ref|YP_919866.1| - 0.15 12.1 0.0 4.2 7.5 0.0 2.3 2 0 0 2 2 2 0 Two-component sensor kinase N-terminal RNA_pol_Rpb2_7 PF04560.20 gi|119719371|ref|YP_919866.1| - 0.16 12.4 0.3 21 5.6 0.0 2.6 3 0 0 3 3 3 0 RNA polymerase Rpb2, domain 7 Zn-ribbon_8 PF09723.10 gi|119719371|ref|YP_919866.1| - 0.43 10.7 6.6 5.3 7.2 0.1 3.2 2 1 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|119719371|ref|YP_919866.1| - 0.5 10.3 0.1 0.5 10.3 0.1 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF424 PF04242.13 gi|119719372|ref|YP_919867.1| - 3.3e-09 36.9 0.0 5.8e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF424) Cdc13_OB4_dimer PF18233.1 gi|119719372|ref|YP_919867.1| - 0.03 14.5 0.0 0.03 14.4 0.0 1.1 1 0 0 1 1 1 0 Cdc13 OB4 dimerization domain ATPase PF06745.13 gi|119719373|ref|YP_919868.1| - 9.2e-57 192.0 0.0 1.1e-56 191.8 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|119719373|ref|YP_919868.1| - 7e-05 21.6 0.0 0.00011 20.9 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|119719373|ref|YP_919868.1| - 0.00024 20.7 0.2 0.00092 18.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|119719373|ref|YP_919868.1| - 0.0024 17.7 0.0 0.0037 17.1 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain ResIII PF04851.15 gi|119719373|ref|YP_919868.1| - 0.012 15.7 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|119719373|ref|YP_919868.1| - 0.021 14.6 0.0 0.03 14.1 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase DnaB_C PF03796.15 gi|119719373|ref|YP_919868.1| - 0.022 14.1 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|119719373|ref|YP_919868.1| - 0.032 14.5 0.5 0.073 13.3 0.5 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|119719373|ref|YP_919868.1| - 0.069 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|119719373|ref|YP_919868.1| - 0.073 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|119719373|ref|YP_919868.1| - 0.076 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|119719373|ref|YP_919868.1| - 0.091 12.3 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region QCR10 PF09796.9 gi|119719373|ref|YP_919868.1| - 0.14 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) AAA_24 PF13479.6 gi|119719373|ref|YP_919868.1| - 0.25 11.0 0.3 0.45 10.2 0.3 1.5 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|119719374|ref|YP_919869.1| - 1.2e-13 51.7 0.0 2.2e-13 50.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HD PF01966.22 gi|119719375|ref|YP_919870.1| - 4.6e-14 52.7 0.7 1.1e-13 51.5 0.7 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|119719375|ref|YP_919870.1| - 0.00018 21.1 0.1 0.00045 19.7 0.0 1.6 2 0 0 2 2 2 1 HDOD domain Sulfolobus_pRN PF05584.11 gi|119719375|ref|YP_919870.1| - 0.035 14.1 0.3 0.2 11.7 0.0 2.2 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein Methyltrn_RNA_2 PF04013.12 gi|119719377|ref|YP_919872.1| - 5e-09 36.1 0.0 7.2e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase TruB_N PF01509.18 gi|119719378|ref|YP_919873.1| - 1e-25 90.9 0.0 4.7e-22 78.9 0.0 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|119719378|ref|YP_919873.1| - 1.2e-22 79.8 0.0 2.2e-22 79.0 0.0 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|119719378|ref|YP_919873.1| - 2.6e-19 69.0 0.4 4.4e-19 68.2 0.4 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|119719378|ref|YP_919873.1| - 1.3e-16 60.4 0.1 4.6e-16 58.6 0.0 2.0 3 0 0 3 3 3 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|119719378|ref|YP_919873.1| - 0.0027 18.0 0.0 0.014 15.7 0.0 2.3 3 0 0 3 3 3 1 UPF0113 PUA domain KOW PF00467.29 gi|119719379|ref|YP_919874.1| - 0.00016 21.5 0.3 0.00028 20.7 0.3 1.4 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.17 gi|119719379|ref|YP_919874.1| - 0.00039 20.8 0.0 0.00051 20.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 WIYLD PF10440.9 gi|119719379|ref|YP_919874.1| - 0.1 12.4 0.0 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain UPF0147 PF03685.13 gi|119719380|ref|YP_919875.1| - 2.8e-32 110.6 0.5 3.3e-32 110.4 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Radical_SAM PF04055.21 gi|119719381|ref|YP_919876.1| - 7.7e-07 29.6 0.1 2.5e-06 27.9 0.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119719381|ref|YP_919876.1| - 0.00011 22.4 0.0 0.00022 21.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119719381|ref|YP_919876.1| - 0.0022 18.3 0.0 0.0042 17.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TFIID_30kDa PF03540.13 gi|119719381|ref|YP_919876.1| - 0.052 13.5 0.0 2.5 8.1 0.0 2.9 3 0 0 3 3 3 0 Transcription initiation factor TFIID 23-30kDa subunit HTH_5 PF01022.20 gi|119719383|ref|YP_919878.1| - 5.5e-13 48.6 0.1 8.5e-13 48.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119719383|ref|YP_919878.1| - 1.5e-09 37.7 0.1 2.9e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|119719383|ref|YP_919878.1| - 3.1e-06 27.0 0.2 4.9e-06 26.3 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|119719383|ref|YP_919878.1| - 0.0011 18.7 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|119719383|ref|YP_919878.1| - 0.0012 18.7 0.7 0.0019 18.1 0.1 1.7 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|119719383|ref|YP_919878.1| - 0.0039 17.5 0.0 0.0065 16.8 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 gi|119719383|ref|YP_919878.1| - 0.004 17.1 0.8 0.11 12.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix Penicillinase_R PF03965.16 gi|119719383|ref|YP_919878.1| - 0.0046 17.3 0.0 0.0062 16.9 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.6 gi|119719383|ref|YP_919878.1| - 0.065 12.8 1.6 0.11 12.1 0.1 2.1 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|119719383|ref|YP_919878.1| - 0.095 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GCD14 PF08704.10 gi|119719384|ref|YP_919879.1| - 7.3e-34 117.5 0.0 2e-33 116.1 0.0 1.6 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|119719384|ref|YP_919879.1| - 1.9e-11 44.1 0.0 2.7e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14_N PF14801.6 gi|119719384|ref|YP_919879.1| - 2.4e-07 30.5 0.2 4.8e-07 29.5 0.2 1.5 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_31 PF13847.6 gi|119719384|ref|YP_919879.1| - 2.4e-07 30.7 0.0 3.3e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|119719384|ref|YP_919879.1| - 1e-05 24.8 0.0 1.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|119719384|ref|YP_919879.1| - 2.9e-05 24.7 0.0 5.5e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719384|ref|YP_919879.1| - 5.9e-05 23.7 0.0 9.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|119719384|ref|YP_919879.1| - 0.0021 17.6 0.0 0.0086 15.6 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|119719384|ref|YP_919879.1| - 0.0043 16.4 0.0 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_3 PF01596.17 gi|119719384|ref|YP_919879.1| - 0.013 14.7 0.0 0.018 14.2 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.6 gi|119719384|ref|YP_919879.1| - 0.015 15.3 0.0 0.02 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119719384|ref|YP_919879.1| - 0.018 15.8 0.0 0.044 14.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|119719384|ref|YP_919879.1| - 0.028 14.4 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|119719384|ref|YP_919879.1| - 0.037 15.1 0.0 0.1 13.7 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.16 gi|119719384|ref|YP_919879.1| - 0.062 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein Glyco_H_20C_C PF18088.1 gi|119719385|ref|YP_919880.1| - 0.19 11.6 0.0 0.33 10.8 0.0 1.3 1 0 0 1 1 1 0 Glycoside Hydrolase 20C C-terminal domain DnaG_DnaB_bind PF08278.11 gi|119719386|ref|YP_919881.1| - 0.011 16.4 0.4 0.011 16.3 0.4 1.1 1 0 0 1 1 1 0 DNA primase DnaG DnaB-binding Ribosomal_S19e PF01090.19 gi|119719387|ref|YP_919882.1| - 3.8e-51 172.4 0.0 4.4e-51 172.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|119719387|ref|YP_919882.1| - 3.1e-05 23.7 0.0 0.0092 15.8 0.0 2.8 3 0 0 3 3 3 1 RuvB C-terminal winged helix domain HTH_12 PF08461.10 gi|119719387|ref|YP_919882.1| - 0.00015 21.6 0.1 0.00029 20.7 0.1 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|119719387|ref|YP_919882.1| - 0.02 14.9 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix GntR PF00392.21 gi|119719387|ref|YP_919882.1| - 0.058 13.1 0.1 0.14 11.8 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|119719387|ref|YP_919882.1| - 0.069 13.2 0.0 2.9 8.0 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain Mrr_N PF14338.6 gi|119719387|ref|YP_919882.1| - 0.074 13.2 0.1 0.31 11.2 0.1 2.0 2 0 0 2 2 2 0 Mrr N-terminal domain dsDNA_bind PF01984.20 gi|119719388|ref|YP_919883.1| - 4.3e-22 78.5 13.2 4.9e-22 78.3 13.2 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain WAC_Acf1_DNA_bd PF10537.9 gi|119719388|ref|YP_919883.1| - 0.14 12.7 1.5 0.2 12.2 1.1 1.5 1 1 1 2 2 2 0 ATP-utilising chromatin assembly and remodelling N-terminal MAS20 PF02064.15 gi|119719388|ref|YP_919883.1| - 0.2 11.7 3.9 0.24 11.5 3.9 1.1 1 0 0 1 1 1 0 MAS20 protein import receptor SurA_N PF09312.11 gi|119719388|ref|YP_919883.1| - 0.25 11.4 5.3 2.6 8.1 5.3 2.0 1 1 0 1 1 1 0 SurA N-terminal domain Ribosomal_L39 PF00832.20 gi|119719389|ref|YP_919884.1| - 1.7e-14 53.1 7.8 2e-14 53.0 7.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|119719390|ref|YP_919885.1| - 1.2e-18 67.1 0.2 1.7e-18 66.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|119719391|ref|YP_919886.1| - 3.6e-63 212.5 0.9 4.7e-63 212.2 0.9 1.1 1 0 0 1 1 1 1 eIF-6 family PGM_PMM_III PF02880.16 gi|119719391|ref|YP_919886.1| - 0.11 12.7 0.1 0.27 11.5 0.0 1.7 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Radical_SAM PF04055.21 gi|119719392|ref|YP_919887.1| - 1.7e-14 54.6 0.0 3.2e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily AIRS PF00586.24 gi|119719393|ref|YP_919888.1| - 3e-17 63.1 0.0 5.8e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|119719393|ref|YP_919888.1| - 0.0024 18.0 0.1 0.004 17.3 0.1 1.5 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain Colicin_V PF02674.16 gi|119719394|ref|YP_919889.1| - 0.0036 17.3 0.8 0.0041 17.1 0.8 1.1 1 0 0 1 1 1 1 Colicin V production protein DctQ PF04290.12 gi|119719394|ref|YP_919889.1| - 0.012 15.5 0.5 0.013 15.4 0.5 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component SPC25 PF06703.11 gi|119719394|ref|YP_919889.1| - 3.9 7.2 6.3 5.9 6.6 6.3 1.3 1 1 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Helicase_C_2 PF13307.6 gi|119719395|ref|YP_919890.1| - 3.5e-21 76.1 0.0 8.3e-21 74.9 0.0 1.6 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|119719395|ref|YP_919890.1| - 1.5e-14 54.0 0.0 2.3e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 HBB PF06777.11 gi|119719395|ref|YP_919890.1| - 3e-08 33.6 0.0 5e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Helical and beta-bridge domain DEAD PF00270.29 gi|119719395|ref|YP_919890.1| - 0.00091 19.0 0.1 0.12 12.2 0.1 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|119719395|ref|YP_919890.1| - 0.036 14.1 0.1 0.68 9.9 0.1 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit GntR PF00392.21 gi|119719395|ref|YP_919890.1| - 0.096 12.4 0.1 2 8.1 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family SIS PF01380.22 gi|119719396|ref|YP_919891.1| - 4.1e-17 62.2 0.6 7.4e-17 61.4 0.4 1.5 1 1 1 2 2 2 1 SIS domain SIS_2 PF13580.6 gi|119719396|ref|YP_919891.1| - 2.7e-11 43.7 5.1 2e-06 27.9 1.9 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|119719396|ref|YP_919891.1| - 0.0088 15.9 2.0 0.09 12.6 0.1 2.2 1 1 1 2 2 2 1 PRMT5 arginine-N-methyltransferase PGM_PMM_I PF02878.16 gi|119719396|ref|YP_919891.1| - 0.073 12.8 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DSHCT PF08148.12 gi|119719397|ref|YP_919892.1| - 0.013 15.2 0.1 0.014 15.0 0.1 1.0 1 0 0 1 1 1 0 DSHCT (NUC185) domain IMS PF00817.20 gi|119719398|ref|YP_919893.1| - 0.12 12.4 0.0 0.75 9.8 0.0 2.2 1 1 0 1 1 1 0 impB/mucB/samB family Hjc PF01870.18 gi|119719399|ref|YP_919894.1| - 0.042 13.8 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|119719399|ref|YP_919894.1| - 0.078 13.5 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Nuclease-related domain Ribosomal_L14 PF00238.19 gi|119719400|ref|YP_919895.1| - 4.9e-35 120.3 0.0 5.9e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|119719400|ref|YP_919895.1| - 0.098 13.0 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.20 gi|119719401|ref|YP_919896.1| - 4.5e-17 61.9 4.1 5.7e-17 61.6 4.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.16 gi|119719402|ref|YP_919897.1| - 3.4e-19 68.5 0.0 3.8e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|119719403|ref|YP_919898.1| - 4e-17 61.9 8.8 5.4e-17 61.5 8.8 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF4355 PF14265.6 gi|119719403|ref|YP_919898.1| - 0.0016 18.7 6.5 0.0018 18.5 6.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4355) DUF1192 PF06698.11 gi|119719403|ref|YP_919898.1| - 0.023 14.7 3.2 0.023 14.7 3.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) Enkurin PF13864.6 gi|119719403|ref|YP_919898.1| - 0.04 14.4 4.1 0.051 14.0 4.1 1.3 1 1 0 1 1 1 0 Calmodulin-binding DUF29 PF01724.16 gi|119719403|ref|YP_919898.1| - 0.079 13.2 3.6 0.1 12.9 3.6 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF29 DUF2299 PF10061.9 gi|119719403|ref|YP_919898.1| - 0.17 11.6 0.7 0.21 11.4 0.7 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) Vps5 PF09325.10 gi|119719403|ref|YP_919898.1| - 0.51 9.9 5.3 0.55 9.7 5.3 1.1 1 0 0 1 1 1 0 Vps5 C terminal like Arg_decarbox_C PF17944.1 gi|119719403|ref|YP_919898.1| - 1.7 9.3 4.1 2.9 8.5 3.8 1.6 1 1 0 1 1 1 0 Arginine decarboxylase C-terminal helical extension Ribosomal_S3_C PF00189.20 gi|119719404|ref|YP_919899.1| - 1.1e-23 83.5 1.6 1.6e-23 83.0 0.7 1.7 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|119719404|ref|YP_919899.1| - 8.1e-10 38.4 0.1 1.4e-09 37.6 0.1 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|119719404|ref|YP_919899.1| - 0.0002 21.1 0.7 0.034 14.0 0.1 2.8 3 0 0 3 3 3 2 KH domain KH_5 PF13184.6 gi|119719404|ref|YP_919899.1| - 0.003 17.6 0.4 0.0053 16.8 0.4 1.5 1 0 0 1 1 1 1 NusA-like KH domain KH_4 PF13083.6 gi|119719404|ref|YP_919899.1| - 0.048 13.6 0.0 0.094 12.6 0.0 1.5 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.19 gi|119719405|ref|YP_919900.1| - 4.9e-25 87.8 0.1 5.5e-25 87.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_L37ae PF01780.19 gi|119719406|ref|YP_919901.1| - 9.5e-32 108.9 3.0 1.1e-31 108.7 3.0 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Rubredoxin_2 PF18073.1 gi|119719406|ref|YP_919901.1| - 0.0032 17.1 3.5 0.57 10.0 0.8 2.3 2 0 0 2 2 2 2 Rubredoxin metal binding domain Elf1 PF05129.13 gi|119719406|ref|YP_919901.1| - 0.0036 17.3 0.2 0.0054 16.8 0.2 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like IBR PF01485.21 gi|119719406|ref|YP_919901.1| - 0.0067 16.6 0.3 0.0089 16.2 0.3 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf-TFIIB PF13453.6 gi|119719406|ref|YP_919901.1| - 0.007 15.7 3.7 0.025 13.9 3.7 1.9 1 1 0 1 1 1 1 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.11 gi|119719406|ref|YP_919901.1| - 0.013 15.4 0.7 0.021 14.7 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|119719406|ref|YP_919901.1| - 0.018 14.9 6.5 0.86 9.6 2.8 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|119719406|ref|YP_919901.1| - 0.022 14.3 0.2 0.03 13.8 0.2 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|119719406|ref|YP_919901.1| - 0.023 14.6 2.5 0.31 11.0 2.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119719406|ref|YP_919901.1| - 0.044 13.7 4.1 0.068 13.2 4.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119719406|ref|YP_919901.1| - 0.074 13.2 1.2 4 7.6 0.3 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|119719406|ref|YP_919901.1| - 0.087 12.8 2.1 1.5 8.8 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|119719406|ref|YP_919901.1| - 0.11 12.4 0.9 0.42 10.6 0.9 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon RNA_POL_M_15KD PF02150.16 gi|119719406|ref|YP_919901.1| - 0.15 12.0 1.1 0.51 10.2 0.1 1.9 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf_C2H2_10 PF18414.1 gi|119719406|ref|YP_919901.1| - 0.3 10.7 2.1 6.1 6.5 0.2 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-RanBP PF00641.18 gi|119719406|ref|YP_919901.1| - 0.35 10.2 3.7 2.7 7.4 0.3 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others UPF0547 PF10571.9 gi|119719406|ref|YP_919901.1| - 0.35 11.0 5.7 2.7 8.1 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.6 gi|119719406|ref|YP_919901.1| - 4.7 7.8 6.9 1.1e+02 3.5 5.4 2.6 2 1 0 2 2 2 0 Zinc-finger double domain RrnaAD PF00398.20 gi|119719407|ref|YP_919902.1| - 8.8e-35 120.0 0.0 1.1e-34 119.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|119719407|ref|YP_919902.1| - 8.2e-05 23.2 0.0 0.00015 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|119719407|ref|YP_919902.1| - 0.00023 20.8 0.0 0.00033 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|119719407|ref|YP_919902.1| - 0.0059 17.2 0.0 0.012 16.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ribosomal_L7Ae PF01248.26 gi|119719408|ref|YP_919903.1| - 1.1e-29 102.0 0.4 1.5e-29 101.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|119719408|ref|YP_919903.1| - 1.4e-05 24.9 0.2 3.2e-05 23.7 0.2 1.7 1 1 1 2 2 2 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|119719408|ref|YP_919903.1| - 0.0015 18.6 0.0 0.0017 18.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 Methyltr_RsmB-F PF01189.17 gi|119719409|ref|YP_919904.1| - 7.6e-42 143.2 0.0 1.2e-41 142.6 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|119719409|ref|YP_919904.1| - 3.3e-11 43.0 1.5 7e-11 41.9 1.5 1.6 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|119719409|ref|YP_919904.1| - 6.5e-10 39.0 0.0 1e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719409|ref|YP_919904.1| - 2.9e-06 27.9 0.1 4.2e-05 24.2 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|119719409|ref|YP_919904.1| - 3.9e-06 27.1 0.0 7.1e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|119719409|ref|YP_919904.1| - 7.9e-05 22.2 0.0 0.011 15.2 0.0 2.3 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.19 gi|119719409|ref|YP_919904.1| - 0.0002 21.2 0.0 0.00057 19.7 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|119719409|ref|YP_919904.1| - 0.00027 21.5 0.1 0.0024 18.5 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|119719409|ref|YP_919904.1| - 0.00097 18.7 0.0 1.5 8.3 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|119719409|ref|YP_919904.1| - 0.0017 17.7 0.0 0.021 14.2 0.0 2.1 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family ADH_zinc_N PF00107.26 gi|119719409|ref|YP_919904.1| - 0.0025 17.8 0.0 0.24 11.4 0.0 2.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Methyltr_RsmF_N PF17125.5 gi|119719409|ref|YP_919904.1| - 0.0046 17.4 0.0 0.27 11.8 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Cons_hypoth95 PF03602.15 gi|119719409|ref|YP_919904.1| - 0.029 14.0 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF43 PF01861.16 gi|119719409|ref|YP_919904.1| - 0.082 12.1 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Fibrillarin PF01269.17 gi|119719409|ref|YP_919904.1| - 0.11 11.6 0.0 0.27 10.3 0.0 1.6 2 0 0 2 2 2 0 Fibrillarin Ribosomal_S28e PF01200.18 gi|119719410|ref|YP_919905.1| - 6.5e-31 106.1 5.9 7.3e-31 106.0 5.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Sld5 PF05916.11 gi|119719411|ref|YP_919906.1| - 6.9e-09 36.1 3.3 1e-08 35.6 3.3 1.2 1 0 0 1 1 1 1 GINS complex protein Porphobil_deam PF01379.20 gi|119719411|ref|YP_919906.1| - 0.025 14.1 0.1 2.8 7.4 0.0 2.2 1 1 1 2 2 2 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain MCM PF00493.23 gi|119719412|ref|YP_919907.1| - 2.1e-103 344.3 0.0 5.4e-103 342.9 0.0 1.7 2 0 0 2 2 2 1 MCM P-loop domain MCM_OB PF17207.3 gi|119719412|ref|YP_919907.1| - 1.8e-38 131.2 0.2 3.2e-38 130.4 0.2 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|119719412|ref|YP_919907.1| - 5.4e-31 106.9 5.1 5.8e-31 106.8 3.0 2.2 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|119719412|ref|YP_919907.1| - 1.3e-16 61.1 0.5 1.5e-15 57.7 0.0 2.4 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|119719412|ref|YP_919907.1| - 3.1e-08 33.2 0.1 6.8e-05 22.3 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|119719412|ref|YP_919907.1| - 9.2e-07 28.9 0.0 2.9e-06 27.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|119719412|ref|YP_919907.1| - 1.5e-05 24.9 0.0 4.2e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) EAP30 PF04157.16 gi|119719412|ref|YP_919907.1| - 0.0046 16.3 0.1 0.0086 15.4 0.1 1.4 1 0 0 1 1 1 1 EAP30/Vps36 family Zn-ribbon_8 PF09723.10 gi|119719412|ref|YP_919907.1| - 0.01 15.9 1.0 0.022 14.9 1.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|119719412|ref|YP_919907.1| - 0.013 15.5 0.5 0.021 14.8 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|119719412|ref|YP_919907.1| - 0.017 15.2 0.0 0.038 14.0 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Inhibitor_I10 PF12559.8 gi|119719412|ref|YP_919907.1| - 0.032 14.5 0.0 15 5.9 0.0 2.6 2 0 0 2 2 2 0 Serine endopeptidase inhibitors Sigma54_activat PF00158.26 gi|119719412|ref|YP_919907.1| - 0.033 13.9 0.1 0.2 11.3 0.1 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain Bot1p PF12298.8 gi|119719412|ref|YP_919907.1| - 0.042 14.0 0.2 0.091 12.9 0.2 1.5 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein AAA_16 PF13191.6 gi|119719412|ref|YP_919907.1| - 0.088 13.2 0.3 0.31 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MAGE PF01454.19 gi|119719412|ref|YP_919907.1| - 0.25 11.0 1.1 0.53 10.0 0.1 1.9 2 0 0 2 2 2 0 MAGE family DEAD PF00270.29 gi|119719413|ref|YP_919908.1| - 2.4e-24 86.1 0.0 2.4e-23 82.8 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|119719413|ref|YP_919908.1| - 4.7e-13 49.5 0.3 1.9e-12 47.6 0.1 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|119719413|ref|YP_919908.1| - 2.4e-10 40.7 0.0 4e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|119719413|ref|YP_919908.1| - 2.7e-10 40.6 0.0 1.2e-08 35.3 0.0 3.2 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_2 PF12826.7 gi|119719413|ref|YP_919908.1| - 1.3e-07 31.6 0.0 9.7e-06 25.6 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|119719413|ref|YP_919908.1| - 1.6e-06 27.6 0.0 0.075 12.9 0.0 3.7 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|119719413|ref|YP_919908.1| - 0.00033 20.4 0.0 0.0071 16.2 0.0 2.8 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|119719413|ref|YP_919908.1| - 0.0018 18.5 0.0 4.2 7.9 0.0 2.8 2 0 0 2 2 2 2 IMS family HHH motif HemN_C PF06969.16 gi|119719413|ref|YP_919908.1| - 0.0065 16.5 0.1 0.024 14.7 0.1 2.1 1 0 0 1 1 1 1 HemN C-terminal domain AAA_30 PF13604.6 gi|119719413|ref|YP_919908.1| - 0.008 15.9 0.0 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain HHH_3 PF12836.7 gi|119719413|ref|YP_919908.1| - 0.028 14.7 0.0 0.28 11.5 0.0 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|119719413|ref|YP_919908.1| - 0.032 14.5 0.0 8.4 6.7 0.0 2.6 1 1 1 2 2 2 0 Pathogenicity locus S4 PF01479.25 gi|119719413|ref|YP_919908.1| - 0.11 12.3 0.0 0.4 10.4 0.0 2.0 1 0 0 1 1 1 0 S4 domain GTP_EFTU_D4 PF14578.6 gi|119719414|ref|YP_919909.1| - 4e-33 113.2 2.8 4e-33 113.2 2.8 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|119719414|ref|YP_919909.1| - 4.1e-31 108.0 0.0 4.2e-30 104.7 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|119719414|ref|YP_919909.1| - 1.9e-19 69.7 0.2 4e-19 68.7 0.2 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|119719414|ref|YP_919909.1| - 1.7e-08 34.7 8.8 3.5e-08 33.7 0.0 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|119719414|ref|YP_919909.1| - 1.3e-07 31.7 0.0 5.2e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|119719414|ref|YP_919909.1| - 0.00021 21.5 0.0 0.00058 20.1 0.0 1.8 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|119719414|ref|YP_919909.1| - 0.0003 20.7 0.0 0.0032 17.3 0.0 2.3 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|119719414|ref|YP_919909.1| - 0.0032 17.5 0.0 0.011 15.8 0.0 1.9 2 0 0 2 2 2 1 Dynamin family PduV-EutP PF10662.9 gi|119719414|ref|YP_919909.1| - 0.0053 16.5 0.2 0.84 9.4 0.0 3.0 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|119719414|ref|YP_919909.1| - 0.033 13.6 0.1 1 8.8 0.0 2.7 2 1 0 2 2 2 0 ADP-ribosylation factor family Ras PF00071.22 gi|119719414|ref|YP_919909.1| - 0.045 13.4 0.0 0.26 10.9 0.0 2.1 1 1 0 1 1 1 0 Ras family RsgA_GTPase PF03193.16 gi|119719414|ref|YP_919909.1| - 0.072 13.0 0.4 2.7 7.8 0.0 2.9 2 1 1 3 3 3 0 RsgA GTPase DUF1741 PF08427.10 gi|119719414|ref|YP_919909.1| - 0.095 12.4 0.4 0.18 11.5 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1741) Ribosomal_L24e PF01246.20 gi|119719415|ref|YP_919910.1| - 3.5e-18 65.6 1.0 4e-18 65.4 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|119719415|ref|YP_919910.1| - 9.1e-05 22.3 0.9 0.00012 21.9 0.9 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.18 gi|119719415|ref|YP_919910.1| - 0.0013 18.8 1.1 0.0037 17.3 1.1 1.7 1 1 0 1 1 1 1 MYND finger zf-C6H2 PF15801.5 gi|119719415|ref|YP_919910.1| - 0.021 15.1 0.2 0.021 15.1 0.2 1.7 2 0 0 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding zf-HIT PF04438.16 gi|119719415|ref|YP_919910.1| - 0.035 14.0 3.9 0.19 11.6 0.4 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF2116 PF09889.9 gi|119719415|ref|YP_919910.1| - 0.11 12.5 2.3 2.2 8.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) VATC PF18716.1 gi|119719415|ref|YP_919910.1| - 0.41 10.5 4.7 1.2 9.1 4.7 1.8 1 1 0 1 1 1 0 Vms1-associating treble clef domain Toprim_4 PF13662.6 gi|119719416|ref|YP_919911.1| - 1.3e-09 38.4 0.2 4.3e-09 36.7 0.2 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|119719416|ref|YP_919911.1| - 1.4e-06 28.6 0.0 3.3e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|119719416|ref|YP_919911.1| - 1.2e-05 25.5 0.2 9e-05 22.7 0.0 2.6 1 1 1 2 2 2 1 Toprim domain SRP54 PF00448.22 gi|119719417|ref|YP_919912.1| - 2.3e-69 232.9 0.1 3.4e-69 232.4 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|119719417|ref|YP_919912.1| - 2.6e-24 85.7 3.8 3.3e-24 85.4 2.3 2.0 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|119719417|ref|YP_919912.1| - 2e-11 43.9 1.3 7.7e-11 42.1 1.3 2.1 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain cobW PF02492.19 gi|119719417|ref|YP_919912.1| - 7.8e-07 28.8 0.2 2.5e-05 23.9 0.2 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|119719417|ref|YP_919912.1| - 1.4e-06 28.2 1.6 3.4e-06 26.9 0.8 2.0 1 1 1 2 2 2 1 AAA domain CbiA PF01656.23 gi|119719417|ref|YP_919912.1| - 3.2e-05 24.0 0.0 0.0001 22.3 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|119719417|ref|YP_919912.1| - 5e-05 23.3 0.1 0.00019 21.5 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase MeaB PF03308.16 gi|119719417|ref|YP_919912.1| - 7.2e-05 21.9 0.2 0.00057 18.9 0.0 2.3 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|119719417|ref|YP_919912.1| - 0.00032 21.0 0.0 0.0017 18.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|119719417|ref|YP_919912.1| - 0.00033 21.1 0.1 0.0011 19.4 0.1 2.0 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|119719417|ref|YP_919912.1| - 0.00037 20.4 0.0 0.0012 18.7 0.0 1.9 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.12 gi|119719417|ref|YP_919912.1| - 0.0006 19.2 0.2 0.0021 17.4 0.1 1.9 2 1 0 2 2 1 1 Zeta toxin AAA PF00004.29 gi|119719417|ref|YP_919912.1| - 0.0011 19.4 0.2 0.022 15.2 0.1 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|119719417|ref|YP_919912.1| - 0.0013 18.5 1.1 0.011 15.5 0.0 2.8 3 0 0 3 3 3 1 Thymidylate kinase AAA_33 PF13671.6 gi|119719417|ref|YP_919912.1| - 0.0016 18.6 0.0 0.0044 17.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719417|ref|YP_919912.1| - 0.0019 18.6 0.0 0.0061 17.0 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain PFOR_II PF17147.4 gi|119719417|ref|YP_919912.1| - 0.0026 18.0 0.3 0.039 14.2 0.0 2.9 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II NTPase_1 PF03266.15 gi|119719417|ref|YP_919912.1| - 0.003 17.5 0.1 0.0082 16.1 0.1 1.7 1 0 0 1 1 1 1 NTPase CLP1_P PF16575.5 gi|119719417|ref|YP_919912.1| - 0.0033 17.2 0.0 1.2 8.9 0.0 2.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop LpxK PF02606.14 gi|119719417|ref|YP_919912.1| - 0.0047 16.1 0.1 0.0088 15.2 0.1 1.4 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase TPM_phosphatase PF04536.14 gi|119719417|ref|YP_919912.1| - 0.0052 17.0 0.1 2.7 8.2 0.0 2.4 1 1 1 2 2 2 1 TPM domain ATP_bind_1 PF03029.17 gi|119719417|ref|YP_919912.1| - 0.0057 16.5 0.1 0.015 15.1 0.1 1.7 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|119719417|ref|YP_919912.1| - 0.0057 16.2 0.2 0.017 14.7 0.2 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain APS_kinase PF01583.20 gi|119719417|ref|YP_919912.1| - 0.015 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Glyco_trans_4_4 PF13579.6 gi|119719417|ref|YP_919912.1| - 0.02 15.3 0.4 0.081 13.4 0.2 2.0 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain ResIII PF04851.15 gi|119719417|ref|YP_919912.1| - 0.022 14.8 0.0 0.039 13.9 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SRPRB PF09439.10 gi|119719417|ref|YP_919912.1| - 0.023 14.1 0.1 3.5 7.0 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|119719417|ref|YP_919912.1| - 0.023 14.1 0.1 0.22 10.9 0.0 2.4 3 0 0 3 3 2 0 ADP-ribosylation factor family HGTP_anticodon PF03129.20 gi|119719417|ref|YP_919912.1| - 0.024 14.8 0.7 11 6.3 0.1 3.6 3 0 0 3 3 3 0 Anticodon binding domain Gtr1_RagA PF04670.12 gi|119719417|ref|YP_919912.1| - 0.025 13.9 0.0 0.053 12.9 0.0 1.5 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_28 PF13521.6 gi|119719417|ref|YP_919912.1| - 0.042 14.1 0.2 0.11 12.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain Glyco_transf_4 PF13439.6 gi|119719417|ref|YP_919912.1| - 0.05 13.6 0.0 0.43 10.6 0.0 2.3 2 0 0 2 2 2 0 Glycosyltransferase Family 4 TPP_enzyme_M PF00205.22 gi|119719417|ref|YP_919912.1| - 0.063 13.0 0.0 0.38 10.5 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain AAA_7 PF12775.7 gi|119719417|ref|YP_919912.1| - 0.065 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region 6PF2K PF01591.18 gi|119719417|ref|YP_919912.1| - 0.067 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase PduV-EutP PF10662.9 gi|119719417|ref|YP_919912.1| - 0.092 12.5 0.0 3.5 7.4 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ParA PF10609.9 gi|119719417|ref|YP_919912.1| - 0.1 12.0 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|119719417|ref|YP_919912.1| - 0.11 12.3 0.6 1.9 8.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|119719417|ref|YP_919912.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit Roc PF08477.13 gi|119719417|ref|YP_919912.1| - 0.16 12.2 0.3 4.1 7.7 0.0 2.7 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase Flavodoxin_1 PF00258.25 gi|119719418|ref|YP_919913.1| - 1.1e-06 28.9 0.0 2.2e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|119719418|ref|YP_919913.1| - 1.2e-06 28.6 1.9 3.4e-06 27.2 0.9 2.0 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119719418|ref|YP_919913.1| - 0.00031 20.3 0.0 0.0076 15.8 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain HSP20 PF00011.21 gi|119719419|ref|YP_919914.1| - 1.2e-14 54.3 1.9 1.6e-14 53.9 1.9 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|119719419|ref|YP_919914.1| - 1.2e-09 37.6 0.1 2.2e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|119719419|ref|YP_919914.1| - 0.0091 17.0 0.1 0.015 16.3 0.1 1.4 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|119719419|ref|YP_919914.1| - 0.017 15.5 0.0 0.047 14.1 0.0 1.7 1 1 1 2 2 2 0 PIH1 CS-like domain Glyco_hydro_65C PF03633.15 gi|119719419|ref|YP_919914.1| - 0.057 13.3 0.1 3.4 7.6 0.0 2.4 2 0 0 2 2 2 0 Glycosyl hydrolase family 65, C-terminal domain SUI1 PF01253.22 gi|119719420|ref|YP_919915.1| - 1.5e-21 76.7 0.1 1.9e-21 76.4 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|119719420|ref|YP_919915.1| - 0.0078 16.5 0.1 0.014 15.7 0.1 1.6 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) GTP_EFTU_D2 PF03144.25 gi|119719420|ref|YP_919915.1| - 0.039 14.4 0.4 0.064 13.7 0.4 1.3 1 0 0 1 1 1 0 Elongation factor Tu domain 2 DUF4032 PF13224.6 gi|119719420|ref|YP_919915.1| - 0.092 12.6 0.0 0.12 12.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4032) Get5_C PF18514.1 gi|119719421|ref|YP_919916.1| - 0.14 11.9 0.3 3 7.7 0.0 2.6 2 0 0 2 2 2 0 Get5 C-terminal domain Arginase PF00491.21 gi|119719423|ref|YP_919918.1| - 2.9e-63 214.0 0.0 3.6e-63 213.7 0.0 1.1 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.13 gi|119719424|ref|YP_919919.1| - 8.3e-05 22.2 5.2 0.00019 21.1 5.2 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|119719424|ref|YP_919919.1| - 0.00015 21.8 1.5 0.00021 21.3 1.5 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119719424|ref|YP_919919.1| - 0.0008 18.7 0.8 0.18 11.3 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|119719424|ref|YP_919919.1| - 0.0031 17.5 0.1 0.004 17.1 0.1 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type HypA PF01155.19 gi|119719424|ref|YP_919919.1| - 0.0051 16.8 0.2 0.0057 16.7 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|119719424|ref|YP_919919.1| - 0.0053 16.3 1.3 0.16 11.6 0.2 2.2 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DUF2072 PF09845.9 gi|119719424|ref|YP_919919.1| - 0.011 16.0 0.2 0.013 15.8 0.2 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein TF_Zn_Ribbon PF08271.12 gi|119719424|ref|YP_919919.1| - 0.012 15.2 1.2 0.72 9.4 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2H2 PF00096.26 gi|119719424|ref|YP_919919.1| - 0.016 15.6 2.5 1.3 9.6 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.6 gi|119719424|ref|YP_919919.1| - 0.018 14.8 0.7 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|119719424|ref|YP_919919.1| - 0.02 14.9 0.6 0.045 13.8 0.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|119719424|ref|YP_919919.1| - 0.02 14.8 1.0 0.88 9.6 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain C1_1 PF00130.22 gi|119719424|ref|YP_919919.1| - 0.025 14.4 0.2 0.031 14.2 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF35_N PF12172.8 gi|119719424|ref|YP_919919.1| - 0.025 14.4 6.1 0.6 10.0 0.5 2.2 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2_4 PF13894.6 gi|119719424|ref|YP_919919.1| - 0.028 15.2 1.8 5 8.2 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger YhfH PF14149.6 gi|119719424|ref|YP_919919.1| - 0.029 14.3 0.6 3.1 7.8 0.1 2.1 1 1 1 2 2 2 0 YhfH-like protein zinc_ribbon_10 PF10058.9 gi|119719424|ref|YP_919919.1| - 0.04 13.7 2.2 0.57 10.0 0.1 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF4379 PF14311.6 gi|119719424|ref|YP_919919.1| - 0.042 14.2 0.3 0.049 14.0 0.3 1.2 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719424|ref|YP_919919.1| - 0.05 13.3 1.2 0.55 10.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.21 gi|119719424|ref|YP_919919.1| - 0.054 13.7 0.2 0.066 13.4 0.2 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|119719424|ref|YP_919919.1| - 0.061 13.3 0.8 0.12 12.3 0.8 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Desulfoferrod_N PF06397.12 gi|119719424|ref|YP_919919.1| - 0.069 12.8 1.6 0.71 9.5 0.1 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn_ribbon_SprT PF17283.2 gi|119719424|ref|YP_919919.1| - 0.074 13.0 5.4 0.87 9.6 5.4 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119719424|ref|YP_919919.1| - 0.082 12.8 3.7 2.1 8.4 0.2 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|119719424|ref|YP_919919.1| - 0.082 13.2 1.4 0.28 11.5 1.4 1.8 1 1 1 2 2 2 0 zinc-ribbon CpXC PF14353.6 gi|119719424|ref|YP_919919.1| - 0.089 12.8 1.2 8.6 6.4 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zf-C2H2_11 PF16622.5 gi|119719424|ref|YP_919919.1| - 0.16 11.8 3.5 0.19 11.5 0.4 2.1 2 0 0 2 2 2 0 zinc-finger C2H2-type zf-AN1 PF01428.16 gi|119719424|ref|YP_919919.1| - 0.27 11.4 2.8 6.7 7.0 0.1 2.1 1 1 1 2 2 2 0 AN1-like Zinc finger zf-CSL PF05207.13 gi|119719424|ref|YP_919919.1| - 0.34 10.7 2.8 0.51 10.1 2.8 1.3 1 1 0 1 1 1 0 CSL zinc finger PyrI_C PF02748.15 gi|119719424|ref|YP_919919.1| - 0.55 10.2 3.4 12 5.9 0.4 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Methyltransf_31 PF13847.6 gi|119719425|ref|YP_919920.1| - 3.7e-07 30.0 0.0 5.8e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119719425|ref|YP_919920.1| - 5.5e-07 30.1 0.1 2.4e-06 28.1 0.0 2.1 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719425|ref|YP_919920.1| - 7.1e-07 29.8 0.0 1.8e-06 28.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|119719425|ref|YP_919920.1| - 1.9e-06 27.7 0.0 2.7e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|119719425|ref|YP_919920.1| - 2.6e-05 23.8 0.0 4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|119719425|ref|YP_919920.1| - 2.7e-05 24.0 0.0 0.00032 20.5 0.0 2.0 1 1 1 2 2 2 1 Met-10+ like-protein CMAS PF02353.20 gi|119719425|ref|YP_919920.1| - 0.00016 21.0 0.0 0.00024 20.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|119719425|ref|YP_919920.1| - 0.00024 20.7 0.0 0.00036 20.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|119719425|ref|YP_919920.1| - 0.00048 19.9 0.0 0.00091 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_30 PF05430.11 gi|119719425|ref|YP_919920.1| - 0.00076 19.4 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.20 gi|119719425|ref|YP_919920.1| - 0.02 14.0 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|119719425|ref|YP_919920.1| - 0.028 13.8 0.0 0.07 12.5 0.0 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|119719425|ref|YP_919920.1| - 0.031 14.1 0.0 0.18 11.6 0.0 2.4 1 1 1 2 2 2 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|119719425|ref|YP_919920.1| - 0.061 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 DNA methylase Methyltr_RsmB-F PF01189.17 gi|119719425|ref|YP_919920.1| - 0.07 12.8 0.0 0.14 11.8 0.0 1.4 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F Methyltransf_9 PF08003.11 gi|119719425|ref|YP_919920.1| - 0.077 11.9 0.0 0.25 10.2 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1698) Spermine_synth PF01564.17 gi|119719425|ref|YP_919920.1| - 0.094 12.1 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Methyltransf_24 PF13578.6 gi|119719425|ref|YP_919920.1| - 0.14 13.2 0.0 0.26 12.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|119719425|ref|YP_919920.1| - 0.2 11.0 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) KH_1 PF00013.29 gi|119719426|ref|YP_919921.1| - 8.7e-15 54.3 1.3 2.1e-08 33.9 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|119719426|ref|YP_919921.1| - 4.9e-05 23.1 2.0 0.0038 17.0 0.0 2.4 2 0 0 2 2 2 2 KH domain RIO1 PF01163.22 gi|119719427|ref|YP_919922.1| - 1.7e-56 190.8 0.0 2.1e-56 190.5 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|119719427|ref|YP_919922.1| - 5.7e-10 39.5 0.2 2.4e-06 27.7 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|119719427|ref|YP_919922.1| - 0.001 18.7 0.0 0.0025 17.5 0.0 1.7 2 0 0 2 2 2 1 Choline/ethanolamine kinase Pkinase PF00069.25 gi|119719427|ref|YP_919922.1| - 0.004 16.6 0.0 0.013 14.8 0.0 1.7 2 0 0 2 2 2 1 Protein kinase domain Kdo PF06293.14 gi|119719427|ref|YP_919922.1| - 0.011 15.1 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|119719427|ref|YP_919922.1| - 0.028 13.2 0.0 0.03 13.1 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase DHHA1 PF02272.19 gi|119719428|ref|YP_919923.1| - 1.2e-12 48.4 0.4 2.9e-10 40.7 0.1 2.6 1 1 1 2 2 2 2 DHHA1 domain DHH PF01368.20 gi|119719428|ref|YP_919923.1| - 8.4e-05 22.8 0.0 0.00015 21.9 0.0 1.4 1 0 0 1 1 1 1 DHH family Ribosomal_S13_N PF08069.12 gi|119719429|ref|YP_919924.1| - 5.4e-25 87.2 0.3 1.4e-24 85.9 0.2 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|119719429|ref|YP_919924.1| - 2.4e-18 66.1 0.2 3.7e-18 65.5 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 RecX PF02631.16 gi|119719429|ref|YP_919924.1| - 0.043 14.3 0.1 7.5 7.0 0.0 2.1 2 0 0 2 2 2 0 RecX family DUF4186 PF13811.6 gi|119719429|ref|YP_919924.1| - 0.078 13.0 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4186) ATP-grasp_2 PF08442.10 gi|119719430|ref|YP_919925.1| - 3.7e-37 127.9 0.0 8.5e-37 126.7 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|119719430|ref|YP_919925.1| - 6e-13 48.9 0.1 9.7e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|119719430|ref|YP_919925.1| - 0.00091 18.7 0.0 0.0074 15.8 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|119719430|ref|YP_919925.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|119719430|ref|YP_919925.1| - 0.18 11.5 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CoA_binding PF02629.19 gi|119719431|ref|YP_919926.1| - 2.9e-31 108.0 1.8 5.9e-31 107.0 1.2 1.9 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|119719431|ref|YP_919926.1| - 8e-18 64.6 0.0 1.4e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.19 gi|119719431|ref|YP_919926.1| - 6.4e-11 42.3 0.0 1.1e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|119719431|ref|YP_919926.1| - 9.7e-08 32.5 0.2 2.3e-07 31.3 0.2 1.6 1 0 0 1 1 1 1 CoA binding domain CIF PF16374.5 gi|119719431|ref|YP_919926.1| - 0.013 15.5 0.0 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Cycle inhibiting factor (CIF) PurK_C PF17769.1 gi|119719431|ref|YP_919926.1| - 0.023 14.4 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylaminoimidazole carboxylase C-terminal domain AA_kinase PF00696.28 gi|119719432|ref|YP_919927.1| - 6.9e-27 94.6 0.1 2.9e-26 92.5 0.1 1.8 1 1 0 1 1 1 1 Amino acid kinase family DUF2537 PF10801.8 gi|119719432|ref|YP_919927.1| - 0.14 12.4 0.2 0.37 11.0 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2537) eRF1_2 PF03464.15 gi|119719433|ref|YP_919928.1| - 2.1e-44 151.0 0.0 4.3e-44 150.1 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|119719433|ref|YP_919928.1| - 6.6e-35 120.0 0.7 6.6e-35 120.0 0.7 2.2 3 0 0 3 3 3 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|119719433|ref|YP_919928.1| - 6.7e-17 62.0 0.1 1.4e-14 54.6 0.0 2.6 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 acVLRF1 PF18859.1 gi|119719433|ref|YP_919928.1| - 1.5e-14 54.4 0.4 6.5e-14 52.3 0.0 2.2 2 1 1 3 3 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_1 PF03463.15 gi|119719433|ref|YP_919928.1| - 2e-10 40.8 0.0 3.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.10 gi|119719433|ref|YP_919928.1| - 2.3e-05 24.4 2.3 2.3e-05 24.4 2.3 1.8 2 0 0 2 2 1 1 Zinc ribbon domain HypA PF01155.19 gi|119719433|ref|YP_919928.1| - 3.1e-05 24.0 0.7 5.7e-05 23.1 0.3 1.7 2 0 0 2 2 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 gi|119719433|ref|YP_919928.1| - 0.0036 16.6 1.6 0.025 13.9 2.0 2.2 1 1 1 2 2 2 2 Transcription factor zinc-finger DUF4379 PF14311.6 gi|119719433|ref|YP_919928.1| - 0.0042 17.4 1.1 0.0085 16.4 1.1 1.5 1 0 0 1 1 1 1 Probable Zinc-ribbon domain baeRF_family2 PF18844.1 gi|119719433|ref|YP_919928.1| - 0.0057 16.7 2.8 0.59 10.2 0.1 2.7 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 Elf1 PF05129.13 gi|119719433|ref|YP_919928.1| - 0.018 15.1 0.4 0.035 14.1 0.4 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like FUR PF01475.19 gi|119719433|ref|YP_919928.1| - 0.018 15.2 0.6 2.2 8.4 0.3 2.6 2 0 0 2 2 2 0 Ferric uptake regulator family zinc_ribbon_4 PF13717.6 gi|119719433|ref|YP_919928.1| - 0.025 14.5 1.4 1.8 8.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Anti-TRAP PF15777.5 gi|119719433|ref|YP_919928.1| - 0.044 13.7 0.5 0.087 12.8 0.5 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Lar_restr_allev PF14354.6 gi|119719433|ref|YP_919928.1| - 0.05 14.0 0.5 0.13 12.6 0.1 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar HAD_SAK_2 PF18143.1 gi|119719433|ref|YP_919928.1| - 0.081 13.2 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 HAD domain in Swiss Army Knife RNA repair proteins DUF2072 PF09845.9 gi|119719433|ref|YP_919928.1| - 0.085 13.1 0.4 0.17 12.1 0.4 1.4 1 0 0 1 1 1 0 Zn-ribbon containing protein Zn_ribbon_SprT PF17283.2 gi|119719433|ref|YP_919928.1| - 0.1 12.5 1.9 0.13 12.2 0.1 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|119719433|ref|YP_919928.1| - 0.3 10.9 0.8 4.6 7.1 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain TFIIS_C PF01096.18 gi|119719433|ref|YP_919928.1| - 1.5 8.7 4.3 7.8 6.4 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) MTS PF05175.14 gi|119719434|ref|YP_919929.1| - 1.1e-09 38.1 0.0 1.6e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|119719434|ref|YP_919929.1| - 4.4e-08 33.7 0.1 8.6e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119719434|ref|YP_919929.1| - 9.4e-08 32.0 0.0 1.2e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|119719434|ref|YP_919929.1| - 1.3e-06 28.0 0.1 1.7e-06 27.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|119719434|ref|YP_919929.1| - 6.1e-06 26.0 0.1 0.0002 21.1 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|119719434|ref|YP_919929.1| - 1.7e-05 25.4 0.0 3.5e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|119719434|ref|YP_919929.1| - 2.1e-05 24.2 0.0 2.8e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|119719434|ref|YP_919929.1| - 0.0017 18.1 0.1 0.0026 17.5 0.1 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_23 PF13489.6 gi|119719434|ref|YP_919929.1| - 0.0031 17.4 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119719434|ref|YP_919929.1| - 0.0056 16.0 0.0 0.0071 15.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|119719434|ref|YP_919929.1| - 0.032 13.6 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|119719434|ref|YP_919929.1| - 0.083 12.5 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|119719434|ref|YP_919929.1| - 0.1 13.4 0.0 0.16 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|119719434|ref|YP_919929.1| - 0.15 12.0 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ECR1_N PF14382.6 gi|119719435|ref|YP_919930.1| - 7.1e-06 25.7 0.0 1.6e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|119719435|ref|YP_919930.1| - 0.00079 20.0 0.0 0.0014 19.2 0.0 1.4 1 0 0 1 1 1 1 Exosome component EXOSC1/CSL4 Prok-RING_1 PF14446.6 gi|119719435|ref|YP_919930.1| - 0.041 13.8 0.5 0.069 13.1 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|119719435|ref|YP_919930.1| - 0.061 13.3 0.5 0.095 12.7 0.5 1.2 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.7 gi|119719435|ref|YP_919930.1| - 0.12 12.4 1.0 0.2 11.7 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon S1 PF00575.23 gi|119719435|ref|YP_919930.1| - 0.42 11.0 3.6 1.1 9.6 0.8 2.6 2 1 0 2 2 2 0 S1 RNA binding domain Auto_anti-p27 PF06677.12 gi|119719435|ref|YP_919930.1| - 0.51 10.5 4.4 0.95 9.7 4.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2067 PF09840.9 gi|119719436|ref|YP_919931.1| - 2.5e-45 154.4 1.7 2.9e-45 154.1 1.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) NAD_kinase PF01513.21 gi|119719437|ref|YP_919932.1| - 1.2e-25 90.3 0.1 2.9e-25 89.1 0.1 1.5 1 1 0 1 1 1 1 ATP-NAD kinase ATPase PF06745.13 gi|119719438|ref|YP_919933.1| - 5.1e-67 225.6 0.0 6.1e-67 225.3 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|119719438|ref|YP_919933.1| - 1.1e-06 28.3 0.0 1.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|119719438|ref|YP_919933.1| - 4.5e-05 22.9 0.1 0.001 18.4 0.0 2.1 2 0 0 2 2 2 1 Rad51 DnaB_C PF03796.15 gi|119719438|ref|YP_919933.1| - 0.0047 16.3 0.0 0.0077 15.6 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|119719438|ref|YP_919933.1| - 0.035 12.7 0.1 0.12 11.0 0.0 1.7 2 0 0 2 2 2 0 GvpD gas vesicle protein DEAD PF00270.29 gi|119719438|ref|YP_919933.1| - 0.074 12.8 0.0 0.5 10.1 0.0 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase Pcc1 PF09341.10 gi|119719439|ref|YP_919934.1| - 2.7e-09 37.0 0.2 3.5e-09 36.7 0.2 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 AAA_23 PF13476.6 gi|119719441|ref|YP_919936.1| - 9.9e-16 58.8 1.8 9.9e-16 58.8 1.8 4.7 1 1 2 3 3 2 1 AAA domain SMC_N PF02463.19 gi|119719441|ref|YP_919936.1| - 1.7e-13 50.5 0.0 1.1e-12 47.9 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|119719441|ref|YP_919936.1| - 3.3e-11 43.5 0.0 4.2e-06 26.7 0.0 3.6 1 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|119719441|ref|YP_919936.1| - 1.3e-06 28.4 11.1 0.00093 19.1 0.0 2.9 2 2 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Phage_GP20 PF06810.11 gi|119719441|ref|YP_919936.1| - 1.1e-05 25.3 24.8 0.27 11.1 0.6 4.9 4 1 1 5 5 5 3 Phage minor structural protein GP20 NPV_P10 PF05531.12 gi|119719441|ref|YP_919936.1| - 1.3e-05 25.6 9.9 0.047 14.2 0.1 6.1 4 3 2 6 6 5 1 Nucleopolyhedrovirus P10 protein AAA_29 PF13555.6 gi|119719441|ref|YP_919936.1| - 3.1e-05 23.6 0.0 6.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|119719441|ref|YP_919936.1| - 9.9e-05 22.9 1.9 0.42 11.1 0.0 4.5 2 1 1 3 3 3 1 ABC transporter AAA_13 PF13166.6 gi|119719441|ref|YP_919936.1| - 0.00011 21.0 25.8 0.00073 18.3 11.8 2.7 1 1 1 2 2 2 2 AAA domain BLOC1_2 PF10046.9 gi|119719441|ref|YP_919936.1| - 0.0012 19.1 31.6 0.14 12.5 2.0 6.1 3 2 3 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATG16 PF08614.11 gi|119719441|ref|YP_919936.1| - 0.0019 18.5 44.9 0.047 13.9 13.2 4.3 3 1 0 4 4 4 2 Autophagy protein 16 (ATG16) PI3K_P85_iSH2 PF16454.5 gi|119719441|ref|YP_919936.1| - 0.003 17.2 31.9 0.31 10.6 0.4 5.7 4 1 2 6 6 5 3 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DHR10 PF18595.1 gi|119719441|ref|YP_919936.1| - 0.0064 16.5 7.7 0.0064 16.5 7.7 6.3 4 3 2 6 6 6 1 Designed helical repeat protein 10 domain GAS PF13851.6 gi|119719441|ref|YP_919936.1| - 0.008 15.6 50.8 0.046 13.1 4.6 4.6 3 1 0 4 4 4 3 Growth-arrest specific micro-tubule binding Occludin_ELL PF07303.13 gi|119719441|ref|YP_919936.1| - 0.0081 16.9 32.7 0.18 12.6 1.8 5.7 3 1 3 6 6 6 2 Occludin homology domain Med9 PF07544.13 gi|119719441|ref|YP_919936.1| - 0.0093 16.0 30.0 0.073 13.2 4.8 5.2 4 0 0 4 4 4 2 RNA polymerase II transcription mediator complex subunit 9 AAA_22 PF13401.6 gi|119719441|ref|YP_919936.1| - 0.017 15.4 2.5 0.075 13.3 0.1 3.3 3 1 0 3 3 2 0 AAA domain DUF2730 PF10805.8 gi|119719441|ref|YP_919936.1| - 0.017 15.2 18.2 0.058 13.5 0.2 4.9 4 1 1 5 5 5 0 Protein of unknown function (DUF2730) Laminin_II PF06009.12 gi|119719441|ref|YP_919936.1| - 0.031 14.3 27.1 0.72 9.9 0.7 6.1 2 2 5 7 7 7 0 Laminin Domain II DUF1952 PF09189.10 gi|119719441|ref|YP_919936.1| - 0.034 14.0 1.2 0.4 10.6 0.2 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1952) AAA_27 PF13514.6 gi|119719441|ref|YP_919936.1| - 0.037 13.6 0.0 0.037 13.6 0.0 2.9 3 1 0 4 4 2 0 AAA domain DUF1664 PF07889.12 gi|119719441|ref|YP_919936.1| - 0.054 13.5 19.2 4 7.5 2.0 5.5 4 1 1 5 5 5 0 Protein of unknown function (DUF1664) SbcCD_C PF13558.6 gi|119719441|ref|YP_919936.1| - 0.057 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF3450 PF11932.8 gi|119719441|ref|YP_919936.1| - 0.061 12.6 25.8 1.3 8.3 0.5 4.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3450) DUF4407 PF14362.6 gi|119719441|ref|YP_919936.1| - 0.096 12.0 18.3 0.76 9.1 1.3 3.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) GCN5L1 PF06320.13 gi|119719441|ref|YP_919936.1| - 0.13 12.4 14.6 0.18 12.0 0.9 4.5 4 2 1 5 5 4 0 GCN5-like protein 1 (GCN5L1) cobW PF02492.19 gi|119719441|ref|YP_919936.1| - 0.16 11.5 0.2 0.39 10.3 0.2 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Fez1 PF06818.15 gi|119719441|ref|YP_919936.1| - 0.18 12.3 43.1 0.68 10.4 10.3 4.3 2 1 2 4 4 4 0 Fez1 DUF745 PF05335.13 gi|119719441|ref|YP_919936.1| - 0.27 10.9 17.2 1.6 8.4 0.2 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF745) V_ATPase_I PF01496.19 gi|119719441|ref|YP_919936.1| - 0.28 9.1 27.3 0.0084 14.1 2.6 3.7 1 1 2 4 4 4 0 V-type ATPase 116kDa subunit family Snapin_Pallidin PF14712.6 gi|119719441|ref|YP_919936.1| - 0.32 11.4 37.5 0.071 13.5 1.2 6.5 5 2 2 7 7 6 0 Snapin/Pallidin Sec34 PF04136.15 gi|119719441|ref|YP_919936.1| - 0.33 10.8 19.5 0.66 9.8 1.3 5.0 4 1 1 5 5 5 0 Sec34-like family T3SSipB PF16535.5 gi|119719441|ref|YP_919936.1| - 0.33 11.4 7.4 74 3.8 1.2 4.4 3 1 1 4 4 4 0 Type III cell invasion protein SipB HemX PF04375.14 gi|119719441|ref|YP_919936.1| - 0.43 9.8 15.7 0.2 10.9 0.6 4.0 4 0 0 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase Spc29 PF17082.5 gi|119719441|ref|YP_919936.1| - 0.57 10.0 18.2 0.086 12.7 1.6 3.6 2 1 0 3 3 3 0 Spindle Pole Component 29 IFT57 PF10498.9 gi|119719441|ref|YP_919936.1| - 0.61 9.0 33.9 0.37 9.7 3.2 4.2 2 1 2 4 4 4 0 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|119719441|ref|YP_919936.1| - 0.64 8.8 57.3 2.1 7.2 13.6 4.3 1 1 2 4 4 4 0 Spc7 kinetochore protein LOH1CR12 PF10158.9 gi|119719441|ref|YP_919936.1| - 0.87 9.6 12.1 0.026 14.6 2.0 3.4 3 2 1 4 4 4 0 Tumour suppressor protein Prominin PF05478.11 gi|119719441|ref|YP_919936.1| - 1.1 7.1 17.8 0.073 11.0 0.5 3.0 2 1 1 3 3 3 0 Prominin NdhM PF10664.9 gi|119719441|ref|YP_919936.1| - 1.2 9.4 5.2 2.3 8.5 0.1 3.3 2 1 0 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M Exonuc_VII_L PF02601.15 gi|119719441|ref|YP_919936.1| - 1.9 8.0 31.9 2.2 7.8 5.9 4.0 1 1 2 3 3 3 0 Exonuclease VII, large subunit FapA PF03961.13 gi|119719441|ref|YP_919936.1| - 2.3 6.7 47.1 0.41 9.2 7.5 4.2 1 1 1 4 4 4 0 Flagellar Assembly Protein A TPR_MLP1_2 PF07926.12 gi|119719441|ref|YP_919936.1| - 3 7.9 44.7 2.8 8.0 2.4 5.1 3 1 0 4 4 4 0 TPR/MLP1/MLP2-like protein FlxA PF14282.6 gi|119719441|ref|YP_919936.1| - 3.7 7.6 14.8 9.6 6.3 0.5 3.9 4 1 0 4 4 3 0 FlxA-like protein Atg14 PF10186.9 gi|119719441|ref|YP_919936.1| - 4.3 6.3 44.0 1.6 7.7 22.8 4.7 1 1 0 2 2 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 LemA PF04011.12 gi|119719441|ref|YP_919936.1| - 4.4 7.1 12.9 0.18 11.6 1.6 3.7 3 1 1 4 4 4 0 LemA family DUF3140 PF11338.8 gi|119719441|ref|YP_919936.1| - 4.9 7.7 6.0 1.2 9.6 0.4 2.9 3 0 0 3 3 1 0 Protein of unknown function (DUF3140) Sec8_exocyst PF04048.14 gi|119719441|ref|YP_919936.1| - 5.2 6.9 18.8 8.1 6.3 0.2 5.1 4 1 1 5 5 5 0 Sec8 exocyst complex component specific domain Fzo_mitofusin PF04799.13 gi|119719441|ref|YP_919936.1| - 6 6.4 22.9 2.5 7.6 0.5 5.9 3 2 2 6 6 6 0 fzo-like conserved region KxDL PF10241.9 gi|119719441|ref|YP_919936.1| - 6.3 7.2 19.8 4.4 7.6 0.1 5.8 4 1 2 6 6 6 0 Uncharacterized conserved protein TMPIT PF07851.13 gi|119719441|ref|YP_919936.1| - 6.4 5.9 23.8 0.92 8.7 2.1 4.0 3 1 1 4 4 4 0 TMPIT-like protein Sec20 PF03908.13 gi|119719441|ref|YP_919936.1| - 7.9 6.5 11.5 1.5 8.8 0.2 4.7 4 1 1 6 6 5 0 Sec20 BRE1 PF08647.11 gi|119719441|ref|YP_919936.1| - 9.5 6.4 40.4 2 8.5 0.8 4.9 4 1 0 4 4 4 0 BRE1 E3 ubiquitin ligase L51_S25_CI-B8 PF05047.16 gi|119719443|ref|YP_919938.1| - 0.0011 18.8 0.0 0.88 9.5 0.0 2.7 3 0 0 3 3 3 2 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain MoeA_N PF03453.17 gi|119719443|ref|YP_919938.1| - 0.031 14.0 0.3 1.8 8.3 0.1 2.1 2 0 0 2 2 2 0 MoeA N-terminal region (domain I and II) Actin PF00022.19 gi|119719444|ref|YP_919939.1| - 8.8e-17 60.8 0.0 1e-14 54.0 0.0 2.1 1 1 0 1 1 1 1 Actin Alba PF01918.21 gi|119719449|ref|YP_919944.1| - 1.5e-19 69.6 1.3 1.5e-19 69.6 1.3 1.8 2 0 0 2 2 2 1 Alba Rpp20 PF12328.8 gi|119719449|ref|YP_919944.1| - 0.0017 18.3 0.6 0.0037 17.2 0.2 1.6 1 1 1 2 2 2 1 Rpp20 subunit of nuclear RNase MRP and P T2SSE PF00437.20 gi|119719450|ref|YP_919945.1| - 1.5e-09 37.4 0.0 2.2e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|119719450|ref|YP_919945.1| - 0.00024 21.6 0.0 0.00074 20.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.6 gi|119719450|ref|YP_919945.1| - 0.00026 21.0 0.0 0.00072 19.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719450|ref|YP_919945.1| - 0.00034 21.0 0.0 0.00062 20.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|119719450|ref|YP_919945.1| - 0.00081 19.2 0.0 0.021 14.6 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|119719450|ref|YP_919945.1| - 0.0027 17.4 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 gi|119719450|ref|YP_919945.1| - 0.0034 17.8 0.0 0.0099 16.3 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|119719450|ref|YP_919945.1| - 0.0045 17.0 0.0 0.0077 16.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_28 PF13521.6 gi|119719450|ref|YP_919945.1| - 0.0051 17.1 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|119719450|ref|YP_919945.1| - 0.0074 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_5 PF07728.14 gi|119719450|ref|YP_919945.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|119719450|ref|YP_919945.1| - 0.015 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|119719450|ref|YP_919945.1| - 0.016 15.2 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|119719450|ref|YP_919945.1| - 0.017 14.7 0.0 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119719450|ref|YP_919945.1| - 0.019 14.9 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Sigma54_activ_2 PF14532.6 gi|119719450|ref|YP_919945.1| - 0.021 14.9 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|119719450|ref|YP_919945.1| - 0.022 14.0 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.17 gi|119719450|ref|YP_919945.1| - 0.032 13.9 0.1 0.18 11.5 0.0 2.2 2 1 1 3 3 2 0 Thymidylate kinase AAA_33 PF13671.6 gi|119719450|ref|YP_919945.1| - 0.044 13.9 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|119719450|ref|YP_919945.1| - 0.045 13.2 0.0 0.1 12.0 0.0 1.6 2 0 0 2 2 1 0 Chromatin associated protein KTI12 MeaB PF03308.16 gi|119719450|ref|YP_919945.1| - 0.049 12.6 0.0 0.085 11.8 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Sigma54_activat PF00158.26 gi|119719450|ref|YP_919945.1| - 0.052 13.2 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|119719450|ref|YP_919945.1| - 0.054 13.4 0.0 0.15 11.9 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_3 PF07726.11 gi|119719450|ref|YP_919945.1| - 0.055 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|119719450|ref|YP_919945.1| - 0.064 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|119719450|ref|YP_919945.1| - 0.067 13.5 0.0 0.17 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119719450|ref|YP_919945.1| - 0.085 13.3 0.0 0.34 11.3 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|119719450|ref|YP_919945.1| - 0.1 12.3 0.3 0.2 11.4 0.1 1.5 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.6 gi|119719450|ref|YP_919945.1| - 0.1 12.9 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|119719450|ref|YP_919945.1| - 0.12 11.6 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|119719450|ref|YP_919945.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|119719450|ref|YP_919945.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.27 gi|119719450|ref|YP_919945.1| - 0.18 12.3 0.0 0.34 11.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.22 gi|119719450|ref|YP_919945.1| - 0.21 10.8 0.0 0.35 10.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain CBS PF00571.28 gi|119719452|ref|YP_919947.1| - 1.5e-20 73.4 1.2 1.4e-09 38.2 0.0 2.3 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|119719452|ref|YP_919947.1| - 3.2e-13 49.5 2.0 7.5e-13 48.3 0.8 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|119719452|ref|YP_919947.1| - 1.5e-12 47.6 0.9 1.5e-12 47.6 0.9 2.0 3 1 0 3 3 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|119719452|ref|YP_919947.1| - 3.7e-07 30.1 0.2 1.1e-06 28.5 0.2 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|119719452|ref|YP_919947.1| - 9.3e-05 22.8 0.3 0.0004 20.8 0.1 2.0 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|119719452|ref|YP_919947.1| - 0.00093 19.0 0.5 0.0028 17.5 0.3 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|119719452|ref|YP_919947.1| - 0.0019 17.7 0.9 0.0081 15.7 0.4 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|119719452|ref|YP_919947.1| - 0.0058 16.4 1.9 0.041 13.7 0.2 2.9 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|119719452|ref|YP_919947.1| - 0.015 15.2 0.1 0.046 13.7 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|119719452|ref|YP_919947.1| - 0.015 15.1 0.9 0.45 10.4 0.2 3.1 4 0 0 4 4 4 0 Homeodomain-like domain DUF4936 PF16290.5 gi|119719452|ref|YP_919947.1| - 0.021 15.5 0.0 0.042 14.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4936) HTH_Tnp_4 PF13613.6 gi|119719452|ref|YP_919947.1| - 0.022 14.5 0.1 0.18 11.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease Sigma70_r4 PF04545.16 gi|119719452|ref|YP_919947.1| - 0.022 14.2 0.9 0.046 13.2 0.2 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Pou PF00157.17 gi|119719452|ref|YP_919947.1| - 0.028 14.4 0.1 0.069 13.1 0.1 1.7 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain MqsA_antitoxin PF15731.5 gi|119719452|ref|YP_919947.1| - 0.035 14.2 0.0 0.064 13.4 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Thioredoxin_3 PF13192.6 gi|119719452|ref|YP_919947.1| - 0.049 13.7 0.2 0.2 11.7 0.1 2.0 2 1 0 2 2 2 0 Thioredoxin domain MarR_2 PF12802.7 gi|119719452|ref|YP_919947.1| - 0.084 12.8 0.8 0.27 11.2 0.4 2.0 2 0 0 2 2 2 0 MarR family Aminotran_3 PF00202.21 gi|119719453|ref|YP_919948.1| - 5.4e-134 446.9 0.0 6.6e-134 446.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|119719453|ref|YP_919948.1| - 0.0052 16.0 0.0 0.0081 15.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|119719453|ref|YP_919948.1| - 0.19 10.6 0.0 47 2.8 0.0 2.9 3 0 0 3 3 3 0 Aminotransferase class-V POR PF01558.18 gi|119719454|ref|YP_919949.1| - 1.3e-30 106.7 0.6 1.8e-30 106.3 0.6 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Biotin_lipoyl_2 PF13533.6 gi|119719454|ref|YP_919949.1| - 0.029 14.2 0.0 0.068 13.0 0.0 1.7 1 0 0 1 1 1 0 Biotin-lipoyl like Fer4 PF00037.27 gi|119719455|ref|YP_919950.1| - 5.6e-15 54.4 14.6 2.8e-08 33.2 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119719455|ref|YP_919950.1| - 7.2e-11 42.5 16.9 5.1e-09 36.6 8.5 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719455|ref|YP_919950.1| - 6.1e-10 38.7 13.5 5.7e-06 26.2 3.0 2.4 2 1 1 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119719455|ref|YP_919950.1| - 8.6e-10 38.6 19.3 7.5e-07 29.2 9.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119719455|ref|YP_919950.1| - 7.2e-09 35.7 7.4 9.3e-09 35.3 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119719455|ref|YP_919950.1| - 1.1e-07 31.9 7.4 1.6e-07 31.4 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119719455|ref|YP_919950.1| - 3.4e-07 31.1 6.8 0.002 19.0 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|119719455|ref|YP_919950.1| - 3.8e-07 30.8 11.5 0.0039 17.9 2.7 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|119719455|ref|YP_919950.1| - 3.8e-06 27.3 2.7 0.043 14.4 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119719455|ref|YP_919950.1| - 5.3e-06 26.2 14.1 0.0031 17.5 4.0 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119719455|ref|YP_919950.1| - 6.9e-05 23.0 13.3 0.013 15.9 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|119719455|ref|YP_919950.1| - 0.00036 21.0 8.6 0.035 14.7 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|119719455|ref|YP_919950.1| - 0.0025 18.2 10.6 0.13 12.7 2.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|119719455|ref|YP_919950.1| - 0.15 12.2 1.6 0.18 12.0 1.6 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|119719455|ref|YP_919950.1| - 0.88 10.5 10.9 0.52 11.2 2.0 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain IBD PF10416.9 gi|119719455|ref|YP_919950.1| - 3 7.9 3.7 1.7 8.7 0.3 1.9 1 1 1 2 2 2 0 Transcription-initiator DNA-binding domain IBD POR_N PF01855.19 gi|119719456|ref|YP_919951.1| - 4.4e-65 219.7 0.0 5.5e-65 219.3 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|119719456|ref|YP_919951.1| - 2.9e-27 95.0 0.1 5.3e-27 94.1 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|119719456|ref|YP_919951.1| - 8.9e-05 22.4 0.2 0.00035 20.4 0.1 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|119719457|ref|YP_919952.1| - 6.3e-23 81.3 0.2 1e-22 80.6 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|119719457|ref|YP_919952.1| - 0.0029 16.9 0.0 0.0039 16.4 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Asp_Glu_race PF01177.22 gi|119719457|ref|YP_919952.1| - 0.072 12.9 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase DUF2070 PF09843.9 gi|119719458|ref|YP_919953.1| - 7.9e-104 348.0 6.6 3.2e-102 342.7 6.6 2.0 1 1 0 1 1 1 1 Predicted membrane protein (DUF2070) SpoU_methylase PF00588.19 gi|119719459|ref|YP_919954.1| - 3.1e-28 98.7 0.0 4.4e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|119719459|ref|YP_919954.1| - 0.0025 17.7 0.0 0.038 13.8 0.0 2.1 1 1 1 2 2 2 1 SAM-dependent RNA methyltransferase Ribosomal_L16 PF00252.18 gi|119719460|ref|YP_919955.1| - 1.3e-32 112.6 0.1 1.6e-32 112.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF2192 PF09958.9 gi|119719461|ref|YP_919956.1| - 2.9e-81 272.4 3.0 3.3e-81 272.2 3.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_S26e PF01283.19 gi|119719462|ref|YP_919957.1| - 4.7e-22 78.5 0.7 5.5e-22 78.3 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|119719462|ref|YP_919957.1| - 0.00014 21.9 0.9 0.026 14.7 0.1 2.8 3 0 0 3 3 3 2 C4-type zinc ribbon domain PHD PF00628.29 gi|119719462|ref|YP_919957.1| - 0.014 15.3 0.2 0.56 10.1 0.1 2.2 2 0 0 2 2 2 0 PHD-finger Prok-RING_1 PF14446.6 gi|119719462|ref|YP_919957.1| - 0.055 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf_UBZ PF18439.1 gi|119719462|ref|YP_919957.1| - 0.057 13.0 3.0 0.37 10.4 0.0 2.5 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Methyltrn_RNA_2 PF04013.12 gi|119719463|ref|YP_919958.1| - 6.9e-24 84.7 0.0 1.5e-23 83.6 0.0 1.5 1 1 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.19 gi|119719463|ref|YP_919958.1| - 0.0099 16.1 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family HTH_5 PF01022.20 gi|119719466|ref|YP_919961.1| - 2.4e-09 36.9 0.0 6.8e-09 35.5 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119719466|ref|YP_919961.1| - 3.8e-06 26.9 2.7 4.1e-06 26.8 0.2 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain DUF35_N PF12172.8 gi|119719466|ref|YP_919961.1| - 9.4e-05 22.2 1.5 0.00018 21.3 1.5 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|119719466|ref|YP_919961.1| - 0.0037 17.0 0.0 0.006 16.3 0.0 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HTH_Crp_2 PF13545.6 gi|119719466|ref|YP_919961.1| - 0.0077 16.2 0.1 0.023 14.6 0.1 1.9 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|119719466|ref|YP_919961.1| - 0.02 15.0 0.6 0.038 14.1 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HTH_34 PF13601.6 gi|119719466|ref|YP_919961.1| - 0.034 14.3 0.0 0.082 13.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|119719466|ref|YP_919961.1| - 0.037 13.9 0.1 0.13 12.2 0.1 1.9 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|119719466|ref|YP_919961.1| - 0.048 13.2 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HypA PF01155.19 gi|119719466|ref|YP_919961.1| - 0.087 12.9 0.2 0.2 11.7 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HxlR PF01638.17 gi|119719466|ref|YP_919961.1| - 0.11 12.3 0.1 0.39 10.6 0.1 1.9 1 0 0 1 1 1 0 HxlR-like helix-turn-helix UPF0020 PF01170.18 gi|119719469|ref|YP_919964.1| - 1.9e-28 99.5 0.0 1.3e-26 93.6 0.0 2.6 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|119719469|ref|YP_919964.1| - 8.5e-13 48.2 0.0 1.5e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain THUMP PF02926.17 gi|119719469|ref|YP_919964.1| - 1.7e-09 37.9 0.9 3.3e-09 37.0 0.9 1.4 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.12 gi|119719469|ref|YP_919964.1| - 1.6e-07 31.9 0.0 4.7e-07 30.4 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719469|ref|YP_919964.1| - 3.5e-07 30.8 0.0 1.3e-06 29.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119719469|ref|YP_919964.1| - 4.9e-07 29.7 0.0 9.2e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|119719469|ref|YP_919964.1| - 0.0026 17.4 0.0 0.0041 16.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|119719469|ref|YP_919964.1| - 0.0046 16.3 0.0 0.0078 15.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family AviRa PF11599.8 gi|119719469|ref|YP_919964.1| - 0.012 15.1 0.1 0.92 8.9 0.0 2.7 2 1 1 3 3 3 0 RRNA methyltransferase AviRa N6_N4_Mtase PF01555.18 gi|119719469|ref|YP_919964.1| - 0.15 11.7 0.0 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 DNA methylase N6_Mtase PF02384.16 gi|119719469|ref|YP_919964.1| - 0.25 10.5 0.0 2.5 7.3 0.0 2.2 2 1 0 2 2 2 0 N-6 DNA Methylase eRF1_1 PF03463.15 gi|119719470|ref|YP_919965.1| - 8.6e-20 71.0 0.0 2.9e-19 69.4 0.0 1.8 2 1 0 2 2 2 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|119719470|ref|YP_919965.1| - 5.1e-10 39.8 0.3 1.5e-09 38.3 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 3 LAGLIDADG_3 PF14528.6 gi|119719470|ref|YP_919965.1| - 0.032 14.5 0.0 0.11 12.8 0.0 1.9 1 1 0 1 1 1 0 LAGLIDADG-like domain acVLRF1 PF18859.1 gi|119719470|ref|YP_919965.1| - 0.11 12.8 4.3 0.069 13.4 0.9 2.4 3 0 0 3 3 3 0 Actinobacteria/chloroflexi VLRF1 release factor EMG1 PF03587.14 gi|119719471|ref|YP_919966.1| - 4.6e-43 147.1 0.0 5.3e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Glyco_transf_4 PF13439.6 gi|119719471|ref|YP_919966.1| - 0.0092 16.0 0.1 0.053 13.5 0.2 2.0 1 1 1 2 2 2 1 Glycosyltransferase Family 4 DUF2937 PF11157.8 gi|119719473|ref|YP_919968.1| - 0.15 11.8 0.2 0.29 10.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) Rpr2 PF04032.16 gi|119719474|ref|YP_919969.1| - 2e-13 50.4 0.0 2.4e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_13 PF09855.9 gi|119719474|ref|YP_919969.1| - 0.006 16.7 4.0 0.047 13.9 4.0 2.1 1 1 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) SpdB PF05122.13 gi|119719474|ref|YP_919969.1| - 0.048 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Mobile element transfer protein Zn_Tnp_IS1595 PF12760.7 gi|119719474|ref|YP_919969.1| - 2.2 8.3 5.1 7.8 6.6 0.6 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF402 PF04167.13 gi|119719475|ref|YP_919970.1| - 7.2e-10 38.9 0.0 1.3e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|119719475|ref|YP_919970.1| - 2.9e-05 23.6 0.0 4.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family HIT PF01230.23 gi|119719476|ref|YP_919971.1| - 1.7e-13 51.1 0.0 2.3e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|119719476|ref|YP_919971.1| - 1.1e-07 32.4 0.0 1.6e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|119719476|ref|YP_919971.1| - 2.7e-06 27.2 0.1 6.7e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 Protein similar to CwfJ C-terminus 1 GTP_EFTU PF00009.27 gi|119719477|ref|YP_919972.1| - 1.6e-30 106.1 0.1 1.2e-29 103.3 0.1 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|119719477|ref|YP_919972.1| - 5.5e-29 100.3 0.1 1.2e-28 99.1 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|119719477|ref|YP_919972.1| - 6.6e-07 29.6 0.9 1.8e-06 28.3 0.9 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|119719477|ref|YP_919972.1| - 1.8e-05 24.8 0.0 4.4e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|119719477|ref|YP_919972.1| - 0.0005 20.0 0.1 0.4 10.6 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase PduV-EutP PF10662.9 gi|119719477|ref|YP_919972.1| - 0.066 13.0 0.1 6.8 6.4 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|119719477|ref|YP_919972.1| - 0.094 12.7 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|119719477|ref|YP_919972.1| - 0.1 11.6 0.3 0.91 8.4 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB FeoB_N PF02421.18 gi|119719477|ref|YP_919972.1| - 0.13 11.8 0.2 19 4.8 0.0 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B tRNA-synt_1d PF00750.19 gi|119719478|ref|YP_919973.1| - 6.5e-31 107.5 0.0 5.4e-28 98.0 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|119719478|ref|YP_919973.1| - 8.9e-30 103.3 0.2 2.9e-29 101.7 0.0 2.0 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1g PF09334.11 gi|119719478|ref|YP_919973.1| - 0.0007 18.4 0.0 0.011 14.5 0.1 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|119719478|ref|YP_919973.1| - 0.0041 15.4 0.4 0.054 11.7 0.1 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|119719478|ref|YP_919973.1| - 0.047 13.0 0.0 0.16 11.2 0.0 1.8 3 0 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|119719478|ref|YP_919973.1| - 0.091 11.7 0.1 3.2 6.6 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) HemN_C PF06969.16 gi|119719478|ref|YP_919973.1| - 0.094 12.8 0.0 0.26 11.4 0.0 1.8 1 0 0 1 1 1 0 HemN C-terminal domain DUF2937 PF11157.8 gi|119719479|ref|YP_919974.1| - 0.14 11.8 0.1 0.32 10.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) tRNA-synt_1 PF00133.22 gi|119719481|ref|YP_919976.1| - 2.6e-61 207.6 0.0 5.4e-59 200.0 0.0 3.3 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|119719481|ref|YP_919976.1| - 8.5e-24 84.0 0.3 1.7e-09 36.9 0.0 4.1 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|119719481|ref|YP_919976.1| - 6.7e-21 74.8 1.1 1.3e-20 73.9 1.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|119719481|ref|YP_919976.1| - 1.6e-11 44.1 0.0 2.8e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|119719481|ref|YP_919976.1| - 5.3e-08 32.6 0.0 2.2e-05 24.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|119719481|ref|YP_919976.1| - 0.003 16.5 0.2 0.059 12.3 0.0 2.8 3 1 0 3 3 3 1 tRNA synthetases class I (K) Hist_deacetyl PF00850.19 gi|119719483|ref|YP_919978.1| - 1.2e-66 225.3 0.0 1.7e-66 224.8 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain POR PF01558.18 gi|119719484|ref|YP_919979.1| - 2.1e-38 132.2 0.0 2.4e-38 132.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|119719485|ref|YP_919980.1| - 3.7e-14 51.8 16.3 1.2e-08 34.4 6.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119719485|ref|YP_919980.1| - 1.4e-11 44.4 10.5 1.7e-11 44.1 10.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719485|ref|YP_919980.1| - 4.7e-10 39.1 15.8 4.8e-06 26.4 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119719485|ref|YP_919980.1| - 2.4e-09 37.6 22.6 2.2e-06 28.2 11.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119719485|ref|YP_919980.1| - 1.7e-08 34.0 12.9 0.00011 22.1 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119719485|ref|YP_919980.1| - 2.6e-08 33.8 22.8 1e-05 25.5 12.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119719485|ref|YP_919980.1| - 4.3e-07 30.8 8.6 0.00033 21.5 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|119719485|ref|YP_919980.1| - 2.3e-06 27.7 9.7 7.7e-06 26.0 10.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719485|ref|YP_919980.1| - 0.00097 19.6 12.1 0.15 12.6 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|119719485|ref|YP_919980.1| - 0.0016 18.9 12.8 0.47 11.0 12.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119719485|ref|YP_919980.1| - 0.0026 18.4 11.9 0.27 12.0 4.7 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|119719485|ref|YP_919980.1| - 0.0048 17.4 10.8 0.29 11.7 2.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119719485|ref|YP_919980.1| - 0.033 14.7 11.7 0.064 13.8 3.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|119719485|ref|YP_919980.1| - 0.36 11.0 10.3 0.8 9.9 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119719485|ref|YP_919980.1| - 0.68 10.8 11.7 0.37 11.7 2.2 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|119719486|ref|YP_919981.1| - 6.3e-73 245.3 0.0 8.2e-73 244.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|119719486|ref|YP_919981.1| - 4.4e-28 97.6 0.0 8e-28 96.7 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|119719486|ref|YP_919981.1| - 1.2e-05 25.2 0.0 4e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|119719486|ref|YP_919981.1| - 0.0081 15.8 0.8 0.0081 15.8 0.8 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|119719487|ref|YP_919982.1| - 5.3e-26 91.2 0.4 7.8e-26 90.7 0.2 1.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Topoisom_bac PF01131.20 gi|119719488|ref|YP_919983.1| - 1.7e-87 294.1 0.0 2.5e-87 293.6 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|119719488|ref|YP_919983.1| - 2.9e-24 85.3 0.0 8.8e-24 83.7 0.0 1.9 1 0 0 1 1 1 1 Toprim domain zf_Rg PF17915.1 gi|119719488|ref|YP_919983.1| - 2.3e-14 52.5 0.6 2.3e-14 52.5 0.6 2.7 3 0 0 3 3 3 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|119719488|ref|YP_919983.1| - 4.7e-12 46.0 0.0 2.4e-10 40.5 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119719488|ref|YP_919983.1| - 3.2e-09 37.1 0.0 0.00027 21.2 0.0 3.9 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119719488|ref|YP_919983.1| - 1.2e-05 25.4 0.0 3e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Zn-ribbon_8 PF09723.10 gi|119719488|ref|YP_919983.1| - 0.0058 16.7 0.4 0.0058 16.7 0.4 2.6 2 0 0 2 2 2 1 Zinc ribbon domain AAA_25 PF13481.6 gi|119719488|ref|YP_919983.1| - 0.038 13.6 0.3 0.25 10.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain Toprim_4 PF13662.6 gi|119719488|ref|YP_919983.1| - 0.061 13.8 0.0 0.48 10.9 0.0 2.6 3 0 0 3 3 2 0 Toprim domain PhoH PF02562.16 gi|119719488|ref|YP_919983.1| - 0.064 12.7 0.0 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein SNF2_N PF00176.23 gi|119719488|ref|YP_919983.1| - 0.07 11.8 0.0 0.22 10.2 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain TF_Zn_Ribbon PF08271.12 gi|119719488|ref|YP_919983.1| - 0.5 9.9 3.6 3 7.4 0.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding DZR PF12773.7 gi|119719488|ref|YP_919983.1| - 0.78 9.8 5.8 0.3 11.1 0.4 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|119719488|ref|YP_919983.1| - 1.5 8.4 5.9 1.8 8.1 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|119719488|ref|YP_919983.1| - 2.9 8.0 4.5 0.97 9.5 0.3 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|119719488|ref|YP_919983.1| - 4.5 7.1 6.8 16 5.4 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain CTP_transf_like PF01467.26 gi|119719489|ref|YP_919984.1| - 1.2e-10 41.8 0.0 2.2e-10 40.9 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like AsnC_trans_reg PF01037.21 gi|119719490|ref|YP_919985.1| - 6.2e-16 58.1 0.1 6.9e-16 58.0 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|119719490|ref|YP_919985.1| - 0.0001 22.3 0.2 0.00029 20.8 0.2 1.7 1 1 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|119719490|ref|YP_919985.1| - 0.076 13.6 0.6 15 6.3 0.0 2.5 2 1 0 2 2 2 0 ACT domain LAL_C2 PF18603.1 gi|119719490|ref|YP_919985.1| - 0.097 12.8 0.1 1.5 9.0 0.0 2.5 1 1 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 DUF359 PF04019.12 gi|119719491|ref|YP_919986.1| - 1.4e-24 86.1 0.0 1.8e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) AsnC_trans_reg PF01037.21 gi|119719492|ref|YP_919987.1| - 1.9e-17 63.0 0.1 3.3e-17 62.2 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|119719492|ref|YP_919987.1| - 2.4e-17 62.2 0.6 9.8e-17 60.3 0.1 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|119719492|ref|YP_919987.1| - 7e-17 61.0 0.0 1.8e-16 59.6 0.0 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|119719492|ref|YP_919987.1| - 2.8e-06 27.1 0.1 8.6e-06 25.6 0.1 1.8 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|119719492|ref|YP_919987.1| - 0.00012 22.0 0.2 0.00044 20.1 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|119719492|ref|YP_919987.1| - 0.00015 21.8 0.0 0.00035 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain NapD PF03927.13 gi|119719492|ref|YP_919987.1| - 0.00016 21.7 0.5 0.0003 20.8 0.5 1.4 1 0 0 1 1 1 1 NapD protein Sigma70_r4_2 PF08281.12 gi|119719492|ref|YP_919987.1| - 0.00018 21.1 0.1 0.00064 19.4 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|119719492|ref|YP_919987.1| - 0.0012 18.3 0.6 0.0031 17.0 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family TrmB PF01978.19 gi|119719492|ref|YP_919987.1| - 0.0014 18.4 0.4 0.0047 16.8 0.0 2.2 2 2 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|119719492|ref|YP_919987.1| - 0.0017 18.1 0.0 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|119719492|ref|YP_919987.1| - 0.0018 18.0 0.1 0.0049 16.6 0.1 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|119719492|ref|YP_919987.1| - 0.0018 18.0 0.0 0.0059 16.4 0.0 1.9 1 1 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|119719492|ref|YP_919987.1| - 0.0019 18.1 0.0 0.0052 16.6 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.6 gi|119719492|ref|YP_919987.1| - 0.0019 18.6 0.3 0.016 15.7 0.0 2.4 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|119719492|ref|YP_919987.1| - 0.0022 18.0 0.1 0.0049 16.9 0.1 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|119719492|ref|YP_919987.1| - 0.0027 17.6 0.1 0.03 14.3 0.0 2.4 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain ACT_4 PF13291.6 gi|119719492|ref|YP_919987.1| - 0.0035 17.9 0.7 0.07 13.7 0.0 2.6 1 1 1 2 2 2 1 ACT domain Fe_dep_repress PF01325.19 gi|119719492|ref|YP_919987.1| - 0.0039 17.3 0.6 0.013 15.7 0.1 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|119719492|ref|YP_919987.1| - 0.0057 16.5 0.1 0.013 15.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|119719492|ref|YP_919987.1| - 0.006 16.1 0.0 0.016 14.7 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|119719492|ref|YP_919987.1| - 0.011 15.7 0.0 0.026 14.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|119719492|ref|YP_919987.1| - 0.013 15.6 1.3 0.045 13.8 0.1 2.1 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 gi|119719492|ref|YP_919987.1| - 0.015 15.1 0.1 0.23 11.3 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain DUF4423 PF14394.6 gi|119719492|ref|YP_919987.1| - 0.036 13.8 0.1 0.094 12.4 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) FtsX_ECD PF18075.1 gi|119719492|ref|YP_919987.1| - 0.039 14.6 0.3 0.47 11.1 0.3 2.3 1 1 1 2 2 2 0 FtsX extracellular domain HTH_6 PF01418.17 gi|119719492|ref|YP_919987.1| - 0.039 13.9 0.1 0.075 13.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family MIase PF02426.16 gi|119719492|ref|YP_919987.1| - 0.04 14.1 0.0 0.12 12.6 0.0 1.7 1 1 1 2 2 2 0 Muconolactone delta-isomerase HxlR PF01638.17 gi|119719492|ref|YP_919987.1| - 0.048 13.5 0.1 0.12 12.2 0.1 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix AsnC_trans_reg2 PF17805.1 gi|119719492|ref|YP_919987.1| - 0.062 13.5 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-like ligand binding domain HTH_Tnp_4 PF13613.6 gi|119719492|ref|YP_919987.1| - 0.064 13.0 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease B-block_TFIIIC PF04182.12 gi|119719492|ref|YP_919987.1| - 0.067 13.4 0.0 0.091 12.9 0.0 1.4 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC DMAP1_like PF17024.5 gi|119719492|ref|YP_919987.1| - 0.076 13.1 0.4 0.18 12.0 0.0 1.7 2 1 0 2 2 2 0 Putative DMAP1-like HTH_Tnp_ISL3 PF13542.6 gi|119719492|ref|YP_919987.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_50 PF18024.1 gi|119719492|ref|YP_919987.1| - 0.13 11.8 0.3 0.44 10.2 0.3 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|119719492|ref|YP_919987.1| - 0.15 12.2 0.0 0.39 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain RNase_PH PF01138.21 gi|119719493|ref|YP_919988.1| - 7.7e-28 97.6 0.0 1.3e-27 96.9 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|119719493|ref|YP_919988.1| - 1e-17 63.9 0.1 2.6e-17 62.6 0.0 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|119719494|ref|YP_919989.1| - 7.8e-36 123.5 0.0 1.1e-35 123.1 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|119719494|ref|YP_919989.1| - 3.4e-16 59.0 0.1 5.9e-16 58.3 0.1 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.29 gi|119719495|ref|YP_919990.1| - 5.1e-08 32.6 0.6 1.5e-07 31.2 0.6 1.8 1 0 0 1 1 1 1 KH domain KH_6 PF15985.5 gi|119719495|ref|YP_919990.1| - 1.5e-06 28.5 0.1 3.5e-06 27.2 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|119719495|ref|YP_919990.1| - 0.0021 17.9 0.9 0.0049 16.7 0.9 1.7 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|119719495|ref|YP_919990.1| - 0.11 12.8 3.9 0.23 11.8 0.3 2.6 2 0 0 2 2 2 0 S1 RNA binding domain SBDS PF01172.18 gi|119719496|ref|YP_919991.1| - 2.3e-21 75.7 0.1 4.3e-21 74.8 0.1 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|119719496|ref|YP_919991.1| - 1.5e-17 63.7 0.3 2.1e-17 63.2 0.3 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|119719496|ref|YP_919991.1| - 0.016 15.2 0.0 0.034 14.2 0.0 1.5 1 0 0 1 1 1 0 Elongation factor G C-terminus DUF4426 PF14467.6 gi|119719496|ref|YP_919991.1| - 0.052 13.5 0.0 0.38 10.7 0.0 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4426) Proteasome PF00227.26 gi|119719497|ref|YP_919992.1| - 3.4e-59 199.5 0.0 4.4e-59 199.2 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|119719497|ref|YP_919992.1| - 5.9e-15 54.6 0.3 1.3e-14 53.5 0.3 1.6 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature ATP_bind_1 PF03029.17 gi|119719498|ref|YP_919993.1| - 8.3e-49 166.5 0.0 9.8e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|119719498|ref|YP_919993.1| - 0.00016 22.1 0.1 0.00056 20.3 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain GTP_EFTU PF00009.27 gi|119719498|ref|YP_919993.1| - 0.00044 19.8 0.0 0.0079 15.7 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain CbiA PF01656.23 gi|119719498|ref|YP_919993.1| - 0.00068 19.7 0.0 0.00089 19.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|119719498|ref|YP_919993.1| - 0.00088 19.0 0.0 0.0032 17.1 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_PrkA PF08298.11 gi|119719498|ref|YP_919993.1| - 0.0019 17.1 0.1 0.0031 16.5 0.1 1.2 1 0 0 1 1 1 1 PrkA AAA domain AAA_22 PF13401.6 gi|119719498|ref|YP_919993.1| - 0.0029 17.9 0.0 0.0094 16.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|119719498|ref|YP_919993.1| - 0.004 16.9 0.0 0.071 12.8 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|119719498|ref|YP_919993.1| - 0.0042 17.0 0.3 0.13 12.1 0.0 2.8 3 1 0 3 3 3 1 RsgA GTPase MeaB PF03308.16 gi|119719498|ref|YP_919993.1| - 0.0061 15.6 0.0 1.8 7.5 0.0 2.7 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|119719498|ref|YP_919993.1| - 0.011 16.0 0.0 0.021 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119719498|ref|YP_919993.1| - 0.022 14.7 0.1 0.045 13.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain CLP1_P PF16575.5 gi|119719498|ref|YP_919993.1| - 0.024 14.5 0.0 0.064 13.0 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PhoH PF02562.16 gi|119719498|ref|YP_919993.1| - 0.027 13.9 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.6 gi|119719498|ref|YP_919993.1| - 0.031 14.0 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119719498|ref|YP_919993.1| - 0.035 14.0 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|119719498|ref|YP_919993.1| - 0.053 13.2 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|119719498|ref|YP_919993.1| - 0.067 13.2 0.0 0.16 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|119719498|ref|YP_919993.1| - 0.079 13.5 0.1 0.17 12.4 0.1 1.5 1 0 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|119719498|ref|YP_919993.1| - 0.099 11.7 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|119719498|ref|YP_919993.1| - 0.1 12.4 0.1 1.7 8.4 0.0 2.7 4 0 0 4 4 3 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|119719498|ref|YP_919993.1| - 0.1 12.9 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119719498|ref|YP_919993.1| - 0.11 13.1 0.0 0.29 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|119719498|ref|YP_919993.1| - 0.12 12.6 0.0 0.22 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|119719498|ref|YP_919993.1| - 0.19 10.5 0.2 2.6 6.8 0.0 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) MMR_HSR1 PF01926.23 gi|119719498|ref|YP_919993.1| - 0.2 11.8 0.0 1.5 9.0 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|119719498|ref|YP_919993.1| - 0.24 10.9 0.0 0.37 10.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Cdc6_C PF09079.11 gi|119719499|ref|YP_919994.1| - 3.8e-21 74.9 0.5 2.6e-20 72.2 0.0 2.5 3 0 0 3 3 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|119719499|ref|YP_919994.1| - 2.2e-14 53.9 0.0 4.4e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719499|ref|YP_919994.1| - 5.3e-14 52.9 0.4 5.2e-11 43.2 0.1 2.5 1 1 1 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|119719499|ref|YP_919994.1| - 2.3e-10 41.0 0.0 4.6e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|119719499|ref|YP_919994.1| - 2.3e-07 31.0 1.2 3.5e-07 30.4 0.3 1.8 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|119719499|ref|YP_919994.1| - 9.4e-05 21.4 2.0 0.0081 15.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|119719499|ref|YP_919994.1| - 0.00019 20.9 0.0 0.00033 20.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 gi|119719499|ref|YP_919994.1| - 0.00074 18.8 0.0 0.0012 18.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.9 gi|119719499|ref|YP_919994.1| - 0.00078 18.8 0.0 0.00092 18.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|119719499|ref|YP_919994.1| - 0.0015 18.4 0.0 0.0031 17.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|119719499|ref|YP_919994.1| - 0.0017 17.6 0.0 0.0046 16.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|119719499|ref|YP_919994.1| - 0.0023 17.7 0.0 0.0052 16.5 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|119719499|ref|YP_919994.1| - 0.0025 17.8 0.5 0.0089 16.0 0.5 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|119719499|ref|YP_919994.1| - 0.014 14.7 0.2 0.52 9.5 0.2 2.3 2 0 0 2 2 2 0 KAP family P-loop domain DEAD PF00270.29 gi|119719499|ref|YP_919994.1| - 0.017 14.9 1.0 5.5 6.7 0.1 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_18 PF13238.6 gi|119719499|ref|YP_919994.1| - 0.018 15.6 0.6 0.052 14.1 0.2 2.0 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|119719499|ref|YP_919994.1| - 0.03 13.8 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|119719499|ref|YP_919994.1| - 0.032 14.5 0.2 0.09 13.1 0.0 1.7 2 1 0 2 2 1 0 AAA domain Ribosomal_S13 PF00416.22 gi|119719499|ref|YP_919994.1| - 0.04 14.3 0.2 0.11 12.8 0.2 1.8 1 0 0 1 1 1 0 Ribosomal protein S13/S18 AAA_30 PF13604.6 gi|119719499|ref|YP_919994.1| - 0.078 12.7 0.2 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain DAO_C PF16901.5 gi|119719499|ref|YP_919994.1| - 0.08 12.8 0.0 0.34 10.8 0.0 1.9 2 0 0 2 2 2 0 C-terminal domain of alpha-glycerophosphate oxidase AAA_14 PF13173.6 gi|119719499|ref|YP_919994.1| - 0.082 12.9 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain PIN_9 PF18477.1 gi|119719499|ref|YP_919994.1| - 0.084 13.2 2.8 0.42 10.9 0.9 2.4 2 0 0 2 2 2 0 PIN like domain AAA_lid_4 PF17864.1 gi|119719499|ref|YP_919994.1| - 0.089 12.6 1.6 0.2 11.5 1.6 1.6 1 0 0 1 1 1 0 RuvB AAA lid domain RNA_helicase PF00910.22 gi|119719499|ref|YP_919994.1| - 0.094 13.1 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|119719499|ref|YP_919994.1| - 0.11 12.6 1.7 1.7 8.7 0.4 2.5 2 1 1 3 3 2 0 Helicase HerA, central domain ResIII PF04851.15 gi|119719499|ref|YP_919994.1| - 0.12 12.4 0.0 0.28 11.2 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|119719499|ref|YP_919994.1| - 0.13 12.3 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|119719499|ref|YP_919994.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain tRNA-synt_1b PF00579.25 gi|119719500|ref|YP_919995.1| - 4.3e-31 108.3 0.0 5.3e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) FYVE PF01363.21 gi|119719500|ref|YP_919995.1| - 0.11 12.7 0.2 0.19 11.9 0.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger PPDK_N PF01326.19 gi|119719501|ref|YP_919996.1| - 1.2e-121 406.0 0.0 1.8e-121 405.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|119719501|ref|YP_919996.1| - 7.9e-74 248.4 0.0 1.2e-73 247.8 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|119719501|ref|YP_919996.1| - 3.6e-25 87.5 1.4 8.2e-25 86.3 0.8 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 gi|119719501|ref|YP_919996.1| - 0.0041 17.3 0.0 4.2 7.6 0.0 3.2 3 0 0 3 3 3 2 PEP-utilising enzyme, N-terminal Radical_SAM PF04055.21 gi|119719501|ref|YP_919996.1| - 0.096 13.1 0.4 1.3 9.3 0.0 3.1 4 0 0 4 4 4 0 Radical SAM superfamily HycI PF01750.18 gi|119719502|ref|YP_919997.1| - 6.9e-05 22.7 0.0 0.00013 21.8 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase maturation protease RHH_1 PF01402.21 gi|119719503|ref|YP_919998.1| - 0.006 16.5 0.0 0.006 16.5 0.0 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NiFe_hyd_SSU_C PF14720.6 gi|119719504|ref|YP_919999.1| - 1.6e-23 82.9 1.9 2.7e-23 82.1 1.9 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|119719504|ref|YP_919999.1| - 2.3e-14 53.3 0.0 6.9e-14 51.8 0.0 1.8 2 1 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|119719504|ref|YP_919999.1| - 3.8e-05 23.4 0.3 3.8e-05 23.4 0.3 3.7 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence NiFeSe_Hases PF00374.19 gi|119719505|ref|YP_920000.1| - 4.2e-56 190.9 0.0 1.4e-36 126.5 0.0 2.6 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Nitrate_red_gam PF02665.14 gi|119719506|ref|YP_920001.1| - 0.16 11.5 13.0 0.32 10.5 2.2 3.2 2 1 1 3 3 3 0 Nitrate reductase gamma subunit Ni_hydr_CYTB PF01292.20 gi|119719506|ref|YP_920001.1| - 3.1 7.3 15.3 0.3 10.7 3.3 3.0 2 1 1 3 3 3 0 Prokaryotic cytochrome b561 CCG PF02754.16 gi|119719507|ref|YP_920002.1| - 8.5e-08 32.3 2.6 0.0059 16.8 0.0 3.2 4 0 0 4 4 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|119719507|ref|YP_920002.1| - 3e-07 30.8 12.4 3.3e-06 27.4 5.5 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119719507|ref|YP_920002.1| - 5.1e-06 26.9 7.7 0.00034 21.1 7.8 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719507|ref|YP_920002.1| - 7.5e-06 26.0 3.6 0.021 14.9 0.1 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119719507|ref|YP_920002.1| - 0.0002 21.5 8.9 0.018 15.2 9.4 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119719507|ref|YP_920002.1| - 0.00036 21.1 11.3 0.00064 20.3 8.4 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119719507|ref|YP_920002.1| - 0.00051 20.1 10.7 0.11 12.7 0.4 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119719507|ref|YP_920002.1| - 0.00082 19.1 18.5 0.0067 16.2 2.9 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119719507|ref|YP_920002.1| - 0.0014 18.6 18.5 0.03 14.4 1.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119719507|ref|YP_920002.1| - 0.0016 18.5 14.8 0.019 15.0 1.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119719507|ref|YP_920002.1| - 0.005 17.2 16.3 0.01 16.3 0.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119719507|ref|YP_920002.1| - 0.15 13.0 10.6 2.7 9.0 11.3 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|119719507|ref|YP_920002.1| - 0.47 10.7 4.0 3.5 7.9 0.1 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119719507|ref|YP_920002.1| - 3.2 8.7 7.1 22 6.0 0.3 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain HypA PF01155.19 gi|119719508|ref|YP_920003.1| - 4.9e-28 97.4 0.0 5.5e-28 97.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|119719508|ref|YP_920003.1| - 0.00072 19.5 0.3 1.2 9.2 0.0 2.7 3 0 0 3 3 3 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119719508|ref|YP_920003.1| - 0.011 15.2 0.3 0.97 9.0 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|119719508|ref|YP_920003.1| - 0.016 15.6 0.0 2.8 8.4 0.0 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar TFIIS_C PF01096.18 gi|119719508|ref|YP_920003.1| - 0.025 14.4 0.6 8.6 6.3 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) CpXC PF14353.6 gi|119719508|ref|YP_920003.1| - 0.037 14.0 0.3 1.2 9.2 0.1 2.5 2 1 1 3 3 3 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|119719508|ref|YP_920003.1| - 0.04 14.0 1.3 7.1 6.8 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119719508|ref|YP_920003.1| - 0.052 13.5 3.6 3 7.9 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119719508|ref|YP_920003.1| - 0.098 12.1 1.0 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|119719508|ref|YP_920003.1| - 0.11 12.5 1.6 2.8 7.9 0.0 2.6 3 0 0 3 3 3 0 Nudix N-terminal Zn_ribbon_recom PF13408.6 gi|119719508|ref|YP_920003.1| - 0.13 12.8 0.2 2.3 8.8 0.0 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-Mss51 PF13824.6 gi|119719508|ref|YP_920003.1| - 0.14 12.2 0.1 3.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|119719508|ref|YP_920003.1| - 0.18 12.3 1.4 0.62 10.6 0.2 2.0 2 0 0 2 2 2 0 Zinc-finger double domain Rubredoxin_2 PF18073.1 gi|119719508|ref|YP_920003.1| - 0.84 9.4 6.9 1.6 8.5 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain ParA PF10609.9 gi|119719509|ref|YP_920004.1| - 4.7e-46 157.2 0.0 9.8e-46 156.2 0.0 1.5 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|119719509|ref|YP_920004.1| - 1.5e-14 54.1 0.0 5.2e-14 52.4 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|119719509|ref|YP_920004.1| - 4.6e-10 39.2 1.8 1.4e-07 31.1 0.5 2.4 2 0 0 2 2 2 2 Anion-transporting ATPase AAA_31 PF13614.6 gi|119719509|ref|YP_920004.1| - 8.7e-09 35.5 0.1 5.3e-06 26.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|119719509|ref|YP_920004.1| - 2.6e-08 33.5 0.1 5.5e-08 32.4 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|119719509|ref|YP_920004.1| - 1.3e-06 28.1 0.0 0.026 14.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|119719509|ref|YP_920004.1| - 0.00037 20.4 0.7 0.6 9.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|119719509|ref|YP_920004.1| - 0.024 13.7 0.2 0.041 12.9 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 gi|119719509|ref|YP_920004.1| - 0.057 12.9 0.6 0.25 10.8 0.2 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ CTP_synth_N PF06418.14 gi|119719509|ref|YP_920004.1| - 0.068 12.5 0.1 0.099 11.9 0.1 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus VirC1 PF07015.11 gi|119719509|ref|YP_920004.1| - 0.15 11.3 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein APS_kinase PF01583.20 gi|119719509|ref|YP_920004.1| - 0.17 11.8 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.6 gi|119719509|ref|YP_920004.1| - 0.21 11.3 0.3 0.34 10.6 0.3 1.5 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|119719510|ref|YP_920005.1| - 5.1e-29 101.8 0.0 3e-28 99.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|119719510|ref|YP_920005.1| - 1.9e-20 73.1 0.0 2.7e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|119719510|ref|YP_920005.1| - 0.00016 21.8 0.0 0.00032 20.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119719510|ref|YP_920005.1| - 0.0013 19.0 0.0 0.0029 17.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain ABC_tran PF00005.27 gi|119719511|ref|YP_920006.1| - 2.2e-33 115.6 0.0 2.8e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119719511|ref|YP_920006.1| - 4.9e-14 52.8 2.9 3.3e-06 27.1 0.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119719511|ref|YP_920006.1| - 6.6e-06 26.8 0.0 7e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119719511|ref|YP_920006.1| - 1.2e-05 25.2 0.0 2.4e-05 24.2 0.0 1.4 2 0 0 2 2 1 1 AAA ATPase domain SMC_N PF02463.19 gi|119719511|ref|YP_920006.1| - 3.4e-05 23.4 0.0 0.00077 19.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119719511|ref|YP_920006.1| - 5.5e-05 22.8 0.2 0.0001 21.9 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|119719511|ref|YP_920006.1| - 0.0028 17.2 0.4 0.098 12.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|119719511|ref|YP_920006.1| - 0.0029 16.7 0.1 0.0047 16.0 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|119719511|ref|YP_920006.1| - 0.0031 17.7 0.0 0.15 12.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119719511|ref|YP_920006.1| - 0.0035 17.7 0.1 0.007 16.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119719511|ref|YP_920006.1| - 0.0097 15.8 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|119719511|ref|YP_920006.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|119719511|ref|YP_920006.1| - 0.016 15.1 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_22 PF13401.6 gi|119719511|ref|YP_920006.1| - 0.03 14.6 0.5 0.18 12.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|119719511|ref|YP_920006.1| - 0.031 13.9 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|119719511|ref|YP_920006.1| - 0.055 13.1 0.1 0.091 12.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|119719511|ref|YP_920006.1| - 0.058 13.4 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|119719511|ref|YP_920006.1| - 0.06 12.6 0.0 0.09 12.0 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|119719511|ref|YP_920006.1| - 0.074 13.3 0.0 0.62 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|119719511|ref|YP_920006.1| - 0.077 12.9 0.1 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain cobW PF02492.19 gi|119719511|ref|YP_920006.1| - 0.087 12.4 0.2 0.15 11.6 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DLIC PF05783.11 gi|119719511|ref|YP_920006.1| - 0.17 10.7 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Mg_chelatase PF01078.21 gi|119719511|ref|YP_920006.1| - 0.18 11.1 0.0 0.42 10.0 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|119719511|ref|YP_920006.1| - 0.22 11.3 0.1 0.39 10.5 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|119719512|ref|YP_920007.1| - 8.3e-31 107.3 0.0 1.1e-30 106.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119719512|ref|YP_920007.1| - 1.1e-14 55.0 1.5 2.9e-06 27.3 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119719512|ref|YP_920007.1| - 1.2e-10 41.2 0.5 0.0001 21.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119719512|ref|YP_920007.1| - 0.00021 20.9 0.2 0.00051 19.7 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119719512|ref|YP_920007.1| - 0.00024 21.4 0.2 0.0035 17.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119719512|ref|YP_920007.1| - 0.0015 19.1 0.0 0.0023 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|119719512|ref|YP_920007.1| - 0.0021 17.7 0.6 0.022 14.3 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119719512|ref|YP_920007.1| - 0.0029 17.4 0.1 0.025 14.3 0.1 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|119719512|ref|YP_920007.1| - 0.0057 16.4 0.0 0.011 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119719512|ref|YP_920007.1| - 0.023 14.9 0.1 0.073 13.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|119719512|ref|YP_920007.1| - 0.027 14.7 0.0 0.17 12.2 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|119719512|ref|YP_920007.1| - 0.03 13.9 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|119719512|ref|YP_920007.1| - 0.035 14.0 0.2 0.068 13.1 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|119719512|ref|YP_920007.1| - 0.036 14.4 0.2 0.057 13.8 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|119719512|ref|YP_920007.1| - 0.04 13.8 0.2 0.13 12.1 0.2 1.8 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 gi|119719512|ref|YP_920007.1| - 0.092 11.5 0.3 3 6.5 0.2 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|119719512|ref|YP_920007.1| - 0.13 11.4 0.1 0.25 10.5 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.7 gi|119719512|ref|YP_920007.1| - 0.16 10.9 0.1 0.25 10.2 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain MMR_HSR1 PF01926.23 gi|119719512|ref|YP_920007.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Polysacc_deac_2 PF04748.13 gi|119719512|ref|YP_920007.1| - 0.17 11.0 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase ATPase_2 PF01637.18 gi|119719512|ref|YP_920007.1| - 0.19 11.6 0.1 0.91 9.4 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea BPD_transp_2 PF02653.16 gi|119719513|ref|YP_920008.1| - 1.7e-40 138.9 35.1 2e-40 138.7 35.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component QCR10 PF09796.9 gi|119719513|ref|YP_920008.1| - 9.8 6.3 7.4 19 5.4 0.7 2.8 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) BPD_transp_2 PF02653.16 gi|119719514|ref|YP_920009.1| - 2.5e-46 158.0 25.4 3.6e-46 157.5 25.4 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ATP-grasp_5 PF13549.6 gi|119719515|ref|YP_920010.1| - 1.1e-78 263.8 0.1 2.3e-78 262.7 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|119719515|ref|YP_920010.1| - 9e-52 174.5 0.4 1.8e-50 170.3 0.1 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|119719515|ref|YP_920010.1| - 8.3e-27 94.0 2.8 3.3e-26 92.1 0.2 3.1 4 0 0 4 4 4 1 CoA binding domain CoA_binding PF02629.19 gi|119719515|ref|YP_920010.1| - 4.9e-16 59.2 0.1 3.7e-15 56.4 0.1 2.4 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|119719515|ref|YP_920010.1| - 0.00035 20.4 0.0 0.00099 18.9 0.0 1.8 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|119719515|ref|YP_920010.1| - 0.0069 15.9 0.1 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_2 PF08442.10 gi|119719515|ref|YP_920010.1| - 0.018 14.6 0.1 0.057 13.0 0.1 1.9 1 1 0 1 1 1 0 ATP-grasp domain F420_oxidored PF03807.17 gi|119719515|ref|YP_920010.1| - 0.067 13.8 0.5 1.4 9.6 0.1 3.6 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent UPF0047 PF01894.17 gi|119719516|ref|YP_920011.1| - 1e-36 125.6 0.0 1.2e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF1743 PF08489.11 gi|119719517|ref|YP_920012.1| - 1.7e-30 105.4 0.0 3.3e-30 104.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|119719517|ref|YP_920012.1| - 2.3e-06 27.5 0.3 4.3e-06 26.6 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|119719517|ref|YP_920012.1| - 0.0022 17.9 2.1 0.004 17.0 2.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|119719517|ref|YP_920012.1| - 0.0038 17.2 0.9 0.0068 16.4 0.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|119719517|ref|YP_920012.1| - 0.0055 16.3 2.9 0.01 15.5 2.9 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|119719517|ref|YP_920012.1| - 0.0098 15.7 1.5 0.018 14.9 1.5 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|119719517|ref|YP_920012.1| - 0.039 13.4 4.3 1 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|119719517|ref|YP_920012.1| - 0.087 12.8 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|119719517|ref|YP_920012.1| - 0.091 12.8 5.0 0.51 10.4 4.9 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719517|ref|YP_920012.1| - 0.14 11.9 4.1 5.7 6.8 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|119719517|ref|YP_920012.1| - 0.15 12.1 0.1 0.32 11.1 0.1 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain Rsm22 PF09243.10 gi|119719517|ref|YP_920012.1| - 0.17 11.1 0.0 0.39 10.0 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial small ribosomal subunit Rsm22 zinc-ribbons_6 PF07191.12 gi|119719517|ref|YP_920012.1| - 0.19 11.7 0.4 0.32 11.0 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons HscB_4_cys PF18256.1 gi|119719517|ref|YP_920012.1| - 0.23 11.3 2.6 0.42 10.5 2.6 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif zf-TFIIB PF13453.6 gi|119719517|ref|YP_920012.1| - 0.25 10.7 3.2 0.83 9.0 3.3 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-Mss51 PF13824.6 gi|119719517|ref|YP_920012.1| - 0.37 10.9 0.8 0.67 10.1 0.8 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|119719517|ref|YP_920012.1| - 1.4 9.1 5.3 11 6.3 0.4 2.4 1 1 2 3 3 3 0 Zinc ribbon domain DUF1610 PF07754.11 gi|119719517|ref|YP_920012.1| - 1.6 8.8 4.8 18 5.4 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf_C2H2_10 PF18414.1 gi|119719517|ref|YP_920012.1| - 1.6 8.4 5.9 3.5 7.3 0.9 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger Ogr_Delta PF04606.12 gi|119719517|ref|YP_920012.1| - 3.1 7.8 4.4 10 6.2 0.3 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_ribbon_recom PF13408.6 gi|119719517|ref|YP_920012.1| - 3.8 8.1 6.5 8.1 7.0 6.5 1.5 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.6 gi|119719517|ref|YP_920012.1| - 4.4 8.0 5.2 11 6.8 0.5 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.16 gi|119719517|ref|YP_920012.1| - 6.7 6.7 7.6 2.9 7.9 1.8 2.3 2 0 0 2 2 2 0 HIT zinc finger polyprenyl_synt PF00348.17 gi|119719519|ref|YP_920014.1| - 5.2e-58 196.1 0.0 6.5e-58 195.8 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase AA_kinase PF00696.28 gi|119719520|ref|YP_920015.1| - 2.1e-51 174.9 0.1 2.4e-51 174.7 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family Ribosomal_L6 PF00347.23 gi|119719521|ref|YP_920016.1| - 1.9e-24 86.1 7.5 5.8e-16 58.9 3.9 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribonuc_L-PSP PF01042.21 gi|119719522|ref|YP_920017.1| - 1.1e-41 141.6 0.0 1.2e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP PALP PF00291.25 gi|119719523|ref|YP_920018.1| - 6.2e-89 298.3 0.9 7.9e-89 297.9 0.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|119719523|ref|YP_920018.1| - 0.00064 20.3 0.0 0.0016 18.9 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|119719523|ref|YP_920018.1| - 0.0013 18.4 0.0 0.0048 16.6 0.0 1.9 1 0 0 1 1 1 1 ACT domain HTH_22 PF13309.6 gi|119719523|ref|YP_920018.1| - 0.031 14.4 0.0 0.076 13.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain DegT_DnrJ_EryC1 PF01041.17 gi|119719523|ref|YP_920018.1| - 0.084 12.2 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PfkB PF00294.24 gi|119719524|ref|YP_920019.1| - 2.2e-25 89.6 0.0 3.2e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase GTP_EFTU PF00009.27 gi|119719525|ref|YP_920020.1| - 1.9e-59 200.5 0.0 3e-59 199.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|119719525|ref|YP_920020.1| - 2.2e-29 101.7 0.0 2.5e-28 98.3 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|119719525|ref|YP_920020.1| - 1.4e-23 82.8 0.0 3e-23 81.7 0.0 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|119719525|ref|YP_920020.1| - 2.2e-23 82.1 0.0 5.7e-23 80.8 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|119719525|ref|YP_920020.1| - 2.8e-13 50.1 0.3 6.7e-13 48.8 0.3 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|119719525|ref|YP_920020.1| - 0.02 15.0 0.0 0.047 13.8 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase hnRNP_Q_AcD PF18360.1 gi|119719525|ref|YP_920020.1| - 0.25 11.3 1.1 16 5.6 0.1 3.0 3 0 0 3 3 3 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain Rootletin PF15035.6 gi|119719526|ref|YP_920021.1| - 0.025 14.6 6.6 0.047 13.7 6.6 1.4 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion YkyA PF10368.9 gi|119719526|ref|YP_920021.1| - 0.047 13.4 4.6 0.074 12.7 4.6 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF4381 PF14316.6 gi|119719526|ref|YP_920021.1| - 0.084 13.1 0.4 0.19 12.0 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Spc7 PF08317.11 gi|119719526|ref|YP_920021.1| - 0.28 10.0 8.0 0.79 8.5 7.7 1.7 2 0 0 2 2 2 0 Spc7 kinetochore protein CdvA PF18822.1 gi|119719526|ref|YP_920021.1| - 0.32 10.8 10.0 0.03 14.1 3.9 2.1 2 0 0 2 2 2 0 CdvA-like coiled-coil domain SlyX PF04102.12 gi|119719526|ref|YP_920021.1| - 1.1 9.9 3.6 1.1 9.9 1.5 2.1 2 0 0 2 2 2 0 SlyX DUF4806 PF16064.5 gi|119719526|ref|YP_920021.1| - 1.1 9.5 2.6 3 8.2 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4806) tRNA-synt_1g PF09334.11 gi|119719527|ref|YP_920022.1| - 4.9e-155 516.1 0.0 5.9e-155 515.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|119719527|ref|YP_920022.1| - 3.9e-12 46.4 0.2 8.2e-12 45.3 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1 PF00133.22 gi|119719527|ref|YP_920022.1| - 1.4e-10 40.1 0.0 3.1e-07 29.1 0.0 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|119719527|ref|YP_920022.1| - 5.5e-05 22.7 0.0 0.0013 18.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|119719527|ref|YP_920022.1| - 0.053 12.4 0.0 3.3 6.5 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|119719527|ref|YP_920022.1| - 0.7 10.0 3.3 2.2 8.4 3.1 1.7 1 1 1 2 2 2 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|119719527|ref|YP_920022.1| - 0.82 9.7 5.0 6.2 6.9 1.8 2.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_7 PF02591.15 gi|119719527|ref|YP_920022.1| - 0.85 9.9 5.5 2.5 8.4 0.6 2.8 2 0 0 2 2 2 0 C4-type zinc ribbon domain Radical_SAM PF04055.21 gi|119719528|ref|YP_920023.1| - 1.8e-26 93.5 0.1 1.6e-25 90.4 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|119719528|ref|YP_920023.1| - 5.9e-24 84.0 0.0 1e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|119719528|ref|YP_920023.1| - 2.4e-13 49.8 3.1 4.8e-13 48.9 3.1 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|119719528|ref|YP_920023.1| - 0.00012 22.1 2.5 0.00078 19.6 2.5 2.5 1 1 0 1 1 1 1 TRAM domain AdoHcyase PF05221.17 gi|119719529|ref|YP_920024.1| - 7.2e-73 245.3 0.0 2.8e-72 243.4 0.0 1.7 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|119719529|ref|YP_920024.1| - 1.4e-54 184.5 0.0 2.6e-54 183.7 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|119719529|ref|YP_920024.1| - 2.9e-09 36.5 0.0 5.3e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|119719529|ref|YP_920024.1| - 2e-06 27.5 0.0 4.5e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|119719529|ref|YP_920024.1| - 0.0055 17.0 0.1 0.014 15.6 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|119719529|ref|YP_920024.1| - 0.017 14.5 0.0 0.098 12.0 0.0 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.21 gi|119719529|ref|YP_920024.1| - 0.044 13.1 0.7 0.1 11.9 0.7 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|119719529|ref|YP_920024.1| - 0.082 13.3 0.1 0.23 11.9 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding PNP_UDP_1 PF01048.20 gi|119719530|ref|YP_920025.1| - 8.4e-55 185.6 0.0 9.5e-55 185.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NAD_binding_10 PF13460.6 gi|119719530|ref|YP_920025.1| - 0.067 13.1 0.0 0.34 10.8 0.0 1.9 2 0 0 2 2 2 0 NAD(P)H-binding tRNA_int_endo PF01974.17 gi|119719531|ref|YP_920026.1| - 3.6e-27 94.2 0.4 5.2e-27 93.7 0.4 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|119719531|ref|YP_920026.1| - 2.9e-11 42.9 0.1 4.5e-11 42.3 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Pribosyltran PF00156.27 gi|119719532|ref|YP_920027.1| - 6.7e-16 58.2 0.0 1.1e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119719532|ref|YP_920027.1| - 0.0043 16.5 0.0 0.0058 16.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Lactamase_B_3 PF13483.6 gi|119719533|ref|YP_920028.1| - 8.8e-11 42.0 0.0 1.5e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|119719533|ref|YP_920028.1| - 2.2e-10 40.4 0.0 1e-09 38.2 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119719533|ref|YP_920028.1| - 5.5e-09 36.3 0.1 1.7e-08 34.7 0.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|119719533|ref|YP_920028.1| - 0.00033 20.1 0.0 0.0015 18.0 0.0 1.8 1 1 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Beta_lactamase3 PF17030.5 gi|119719533|ref|YP_920028.1| - 0.0035 16.6 0.0 0.0051 16.1 0.0 1.1 1 0 0 1 1 1 1 Putative beta-lactamase-like family DNA_primase_S PF01896.19 gi|119719534|ref|YP_920029.1| - 5.7e-21 75.4 0.8 2.9e-20 73.0 0.0 2.2 2 0 0 2 2 2 1 DNA primase small subunit TackOD1 PF18551.1 gi|119719534|ref|YP_920029.1| - 0.0014 18.4 0.7 0.0032 17.2 0.7 1.7 1 1 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|119719534|ref|YP_920029.1| - 0.051 13.6 2.5 0.068 13.2 1.4 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|119719534|ref|YP_920029.1| - 0.51 9.1 2.1 0.76 8.5 2.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase OrfB_Zn_ribbon PF07282.11 gi|119719534|ref|YP_920029.1| - 0.65 10.0 5.4 1.5 8.8 1.1 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|119719534|ref|YP_920029.1| - 2.5 7.9 4.3 8.7 6.2 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119719534|ref|YP_920029.1| - 3.1 8.0 5.3 13 6.0 5.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.13 gi|119719534|ref|YP_920029.1| - 6.2 6.6 8.1 6.5 6.6 2.8 2.6 2 0 0 2 2 2 0 InsA N-terminal domain DNA_primase_lrg PF04104.14 gi|119719535|ref|YP_920030.1| - 7.1e-33 114.1 0.1 2.7e-32 112.2 0.0 1.9 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.18 gi|119719536|ref|YP_920031.1| - 3.9e-14 52.4 0.0 7.5e-13 48.3 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|119719536|ref|YP_920031.1| - 4.3e-09 36.6 0.0 9.8e-08 32.2 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|119719536|ref|YP_920031.1| - 7.2e-08 31.8 0.0 0.0028 16.8 0.0 2.0 2 0 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|119719536|ref|YP_920031.1| - 0.00013 21.5 0.0 0.00019 21.0 0.0 1.4 1 1 0 1 1 1 1 Rad9 STD1 PF17235.2 gi|119719536|ref|YP_920031.1| - 0.017 14.8 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 STD1/MTH1 DUF1818 PF08848.11 gi|119719536|ref|YP_920031.1| - 0.11 12.6 0.0 5.6 7.1 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1818) TFIIS_C PF01096.18 gi|119719537|ref|YP_920032.1| - 2.8e-17 62.3 10.7 3e-17 62.2 2.2 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|119719537|ref|YP_920032.1| - 1.1e-08 34.8 0.4 1.1e-08 34.8 0.4 3.0 2 1 1 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|119719537|ref|YP_920032.1| - 2.8e-07 30.4 6.3 0.0011 18.9 0.4 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|119719537|ref|YP_920032.1| - 7e-05 22.7 8.7 0.0061 16.5 1.3 3.1 2 2 0 2 2 2 2 Nudix N-terminal Baculo_LEF5_C PF11792.8 gi|119719537|ref|YP_920032.1| - 0.00039 20.0 0.2 0.00039 20.0 0.2 3.0 3 1 0 3 3 3 1 Baculoviridae late expression factor 5 C-terminal domain C1_1 PF00130.22 gi|119719537|ref|YP_920032.1| - 0.0011 18.7 3.3 0.018 14.9 0.2 2.8 3 0 0 3 3 3 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 gi|119719537|ref|YP_920032.1| - 0.0016 18.5 10.3 3.1 8.0 4.2 3.9 3 1 0 3 3 3 1 Zinc ribbon domain DUF2846 PF11008.8 gi|119719537|ref|YP_920032.1| - 0.0024 17.8 0.0 0.0042 17.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2846) TF_Zn_Ribbon PF08271.12 gi|119719537|ref|YP_920032.1| - 0.003 17.0 13.8 0.22 11.1 3.3 3.4 2 2 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|119719537|ref|YP_920032.1| - 0.0035 17.0 15.3 4 7.3 2.4 4.2 4 0 0 4 4 4 1 zinc-ribbon domain zf-TFIIB PF13453.6 gi|119719537|ref|YP_920032.1| - 0.0041 16.4 6.8 0.013 14.8 1.0 3.0 3 0 0 3 3 3 1 Transcription factor zinc-finger PhnA_Zn_Ribbon PF08274.12 gi|119719537|ref|YP_920032.1| - 0.0045 16.9 4.3 0.13 12.2 0.2 3.2 3 0 0 3 3 3 1 PhnA Zinc-Ribbon HalOD2 PF18547.1 gi|119719537|ref|YP_920032.1| - 0.0049 16.7 3.5 0.26 11.2 0.0 3.4 4 0 0 4 4 4 1 Halobacterial output domain 2 zinc_ribbon_15 PF17032.5 gi|119719537|ref|YP_920032.1| - 0.0068 17.1 8.9 0.054 14.2 0.3 3.1 2 1 1 3 3 3 2 zinc-ribbon family DZR PF12773.7 gi|119719537|ref|YP_920032.1| - 0.0093 16.0 7.7 0.078 13.0 0.4 2.7 2 2 0 2 2 2 1 Double zinc ribbon Rpr2 PF04032.16 gi|119719537|ref|YP_920032.1| - 0.022 15.1 3.5 0.31 11.3 1.5 2.7 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_4 PF13717.6 gi|119719537|ref|YP_920032.1| - 0.029 14.3 12.3 2 8.4 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain IBR PF01485.21 gi|119719537|ref|YP_920032.1| - 0.029 14.6 6.1 0.18 12.1 1.2 2.9 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zf-MYND PF01753.18 gi|119719537|ref|YP_920032.1| - 0.034 14.3 5.1 2.2 8.4 0.5 2.4 2 1 0 2 2 2 0 MYND finger FdhE PF04216.12 gi|119719537|ref|YP_920032.1| - 0.078 12.8 7.9 0.21 11.5 1.7 2.1 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation OrfB_Zn_ribbon PF07282.11 gi|119719537|ref|YP_920032.1| - 0.091 12.7 10.0 0.86 9.6 1.0 3.0 2 2 1 3 3 3 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|119719537|ref|YP_920032.1| - 0.095 12.1 13.1 0.75 9.3 0.2 3.9 4 0 0 4 4 4 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119719537|ref|YP_920032.1| - 0.12 12.1 10.2 0.3 10.8 0.1 3.6 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zf-RING_7 PF02591.15 gi|119719537|ref|YP_920032.1| - 0.15 12.2 4.2 31 4.9 0.1 3.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain TackOD1 PF18551.1 gi|119719537|ref|YP_920032.1| - 0.16 11.6 4.5 2.5 7.7 4.8 2.4 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Desulfoferrod_N PF06397.12 gi|119719537|ref|YP_920032.1| - 0.21 11.3 0.4 0.21 11.3 0.4 3.1 4 0 0 4 4 2 0 Desulfoferrodoxin, N-terminal domain Lar_restr_allev PF14354.6 gi|119719537|ref|YP_920032.1| - 0.25 11.8 7.1 54 4.3 7.1 2.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.19 gi|119719537|ref|YP_920032.1| - 0.36 10.8 6.6 1 9.4 2.5 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Mut7-C PF01927.16 gi|119719537|ref|YP_920032.1| - 0.42 10.7 5.2 0.5 10.5 3.0 2.2 1 1 0 1 1 1 0 Mut7-C RNAse domain zf_UBZ PF18439.1 gi|119719537|ref|YP_920032.1| - 0.63 9.7 11.0 33 4.2 0.4 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-H2C2_2 PF13465.6 gi|119719537|ref|YP_920032.1| - 0.81 10.2 8.8 41 4.8 0.0 4.1 4 0 0 4 4 4 0 Zinc-finger double domain A2L_zn_ribbon PF08792.10 gi|119719537|ref|YP_920032.1| - 0.91 9.3 12.5 9.8 6.0 0.1 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|119719537|ref|YP_920032.1| - 1 9.1 12.8 9.1 6.1 3.3 3.8 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Elf1 PF05129.13 gi|119719537|ref|YP_920032.1| - 1 9.4 6.0 1.5 8.9 0.8 2.3 1 1 0 2 2 2 0 Transcription elongation factor Elf1 like UPF0547 PF10571.9 gi|119719537|ref|YP_920032.1| - 1.3 9.2 8.0 13 6.0 0.1 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.7 gi|119719537|ref|YP_920032.1| - 2 8.9 0.1 2 8.9 0.1 3.8 4 1 0 4 4 3 0 zinc-finger binding domain of transposase IS66 zf-ACC PF17848.1 gi|119719537|ref|YP_920032.1| - 2.2 8.5 13.1 30 4.8 0.7 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_5 PF13719.6 gi|119719537|ref|YP_920032.1| - 2.3 8.1 13.3 3.5 7.5 3.6 3.5 3 1 0 3 3 3 0 zinc-ribbon domain RecR PF02132.15 gi|119719537|ref|YP_920032.1| - 2.8 7.6 10.7 4.3 7.0 0.1 3.7 4 0 0 4 4 4 0 RecR protein RNHCP PF12647.7 gi|119719537|ref|YP_920032.1| - 3.3 7.8 9.5 9.8 6.2 0.1 3.5 2 2 2 4 4 4 0 RNHCP domain PHD PF00628.29 gi|119719537|ref|YP_920032.1| - 3.6 7.6 8.2 21 5.1 0.3 3.0 2 1 1 3 3 3 0 PHD-finger DUF35_N PF12172.8 gi|119719537|ref|YP_920032.1| - 3.8 7.5 10.9 25 4.9 0.1 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.6 gi|119719537|ref|YP_920032.1| - 5.9 7.6 14.6 1.7 9.3 0.2 3.6 2 2 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin_2 PF18073.1 gi|119719537|ref|YP_920032.1| - 9.9 6.0 18.2 3.9 7.3 0.5 4.0 4 0 0 4 4 4 0 Rubredoxin metal binding domain Cytidylate_kin2 PF13189.6 gi|119719538|ref|YP_920033.1| - 7.2e-23 81.6 2.2 7.7e-21 75.0 2.2 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|119719538|ref|YP_920033.1| - 3.4e-17 63.1 0.1 6.7e-17 62.2 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|119719538|ref|YP_920033.1| - 2.9e-16 60.2 0.1 3.9e-16 59.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|119719538|ref|YP_920033.1| - 5.1e-12 46.0 4.0 3e-05 23.9 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|119719538|ref|YP_920033.1| - 7.2e-07 29.4 0.0 1.8e-06 28.1 0.0 1.7 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|119719538|ref|YP_920033.1| - 1.7e-06 28.3 0.3 0.00015 21.9 0.3 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|119719538|ref|YP_920033.1| - 1.3e-05 25.3 1.5 3.4e-05 24.0 1.5 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.6 gi|119719538|ref|YP_920033.1| - 0.00018 21.8 0.1 0.00047 20.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|119719538|ref|YP_920033.1| - 0.00064 20.1 0.0 0.0012 19.3 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|119719538|ref|YP_920033.1| - 0.0044 16.7 1.3 1.5 8.5 0.0 3.2 1 1 3 4 4 4 1 Thymidylate kinase TsaE PF02367.17 gi|119719538|ref|YP_920033.1| - 0.0047 16.9 0.0 0.0089 16.0 0.0 1.6 1 1 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|119719538|ref|YP_920033.1| - 0.005 17.1 0.0 0.0075 16.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|119719538|ref|YP_920033.1| - 0.0058 15.9 0.4 0.044 13.0 0.4 2.1 1 1 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|119719538|ref|YP_920033.1| - 0.0059 17.0 0.0 0.0082 16.5 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|119719538|ref|YP_920033.1| - 0.0062 15.6 0.2 0.98 8.4 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|119719538|ref|YP_920033.1| - 0.025 14.3 0.2 0.089 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|119719538|ref|YP_920033.1| - 0.029 14.1 0.7 0.46 10.2 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|119719538|ref|YP_920033.1| - 0.035 14.0 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain CoaE PF01121.20 gi|119719538|ref|YP_920033.1| - 0.038 13.7 0.3 1.9 8.1 0.0 2.3 1 1 0 2 2 2 0 Dephospho-CoA kinase NTPase_1 PF03266.15 gi|119719538|ref|YP_920033.1| - 0.069 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|119719538|ref|YP_920033.1| - 0.075 12.2 0.0 0.12 11.6 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain Hydin_ADK PF17213.3 gi|119719538|ref|YP_920033.1| - 0.087 13.1 0.0 0.16 12.2 0.0 1.4 1 1 0 1 1 1 0 Hydin Adenylate kinase-like domain RuvB_N PF05496.12 gi|119719538|ref|YP_920033.1| - 0.089 12.5 0.0 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ATP_bind_1 PF03029.17 gi|119719538|ref|YP_920033.1| - 0.11 12.2 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|119719538|ref|YP_920033.1| - 0.12 12.8 0.0 0.17 12.4 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Viral_helicase1 PF01443.18 gi|119719538|ref|YP_920033.1| - 0.17 11.6 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Ribosomal_L34e PF01199.18 gi|119719539|ref|YP_920034.1| - 4.9e-20 71.6 1.0 6.4e-20 71.3 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.6 gi|119719539|ref|YP_920034.1| - 0.0073 16.2 1.0 0.48 10.4 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) zf-C4_ClpX PF06689.13 gi|119719539|ref|YP_920034.1| - 0.0095 15.8 0.4 0.38 10.7 0.2 2.8 2 1 0 2 2 2 1 ClpX C4-type zinc finger zf-C3HC4_3 PF13920.6 gi|119719539|ref|YP_920034.1| - 0.032 14.1 0.2 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Sgf11 PF08209.11 gi|119719539|ref|YP_920034.1| - 0.14 11.7 1.6 0.36 10.4 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) tRNA-synt_2 PF00152.20 gi|119719540|ref|YP_920035.1| - 6e-84 281.8 0.0 6.9e-84 281.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|119719540|ref|YP_920035.1| - 0.00059 19.4 0.1 0.02 14.3 0.0 2.9 4 0 0 4 4 4 1 tRNA synthetases class II core domain (F) SWIM PF04434.17 gi|119719541|ref|YP_920036.1| - 9.7e-06 25.1 0.2 1.6e-05 24.5 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger tRNA_anti-codon PF01336.25 gi|119719542|ref|YP_920037.1| - 3.2e-06 27.0 0.2 0.00044 20.2 0.1 2.6 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain DUF2240 PF09999.9 gi|119719542|ref|YP_920037.1| - 0.023 14.3 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) tRNA_anti_2 PF13742.6 gi|119719542|ref|YP_920037.1| - 0.091 13.0 0.2 0.46 10.7 0.0 2.2 3 0 0 3 3 3 0 OB-fold nucleic acid binding domain Elf1 PF05129.13 gi|298205345|ref|YP_003717797.1| - 1.1e-17 63.9 0.2 1.2e-17 63.7 0.2 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|298205345|ref|YP_003717797.1| - 0.00053 20.3 0.4 0.0008 19.7 0.4 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF1610 PF07754.11 gi|298205345|ref|YP_003717797.1| - 0.0019 18.1 3.9 0.47 10.5 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|298205345|ref|YP_003717797.1| - 0.0032 16.8 1.7 0.88 9.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-CSL PF05207.13 gi|298205345|ref|YP_003717797.1| - 0.0054 16.4 0.2 0.01 15.5 0.2 1.5 1 0 0 1 1 1 1 CSL zinc finger OrfB_Zn_ribbon PF07282.11 gi|298205345|ref|YP_003717797.1| - 0.009 15.9 1.2 0.019 14.8 1.2 1.5 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|298205345|ref|YP_003717797.1| - 0.035 13.8 2.1 3 7.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|298205345|ref|YP_003717797.1| - 0.035 14.8 2.4 1.6 9.5 0.3 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L32p PF01783.23 gi|298205345|ref|YP_003717797.1| - 0.039 14.2 5.1 0.064 13.5 0.7 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-RING_7 PF02591.15 gi|298205345|ref|YP_003717797.1| - 0.049 13.8 1.8 5 7.4 0.2 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-TFIIB PF13453.6 gi|298205345|ref|YP_003717797.1| - 0.071 12.5 0.6 0.16 11.3 0.6 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger FdhE PF04216.12 gi|298205345|ref|YP_003717797.1| - 0.077 12.9 1.0 0.088 12.7 1.0 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Rubredoxin PF00301.20 gi|298205345|ref|YP_003717797.1| - 0.083 12.9 0.5 0.33 11.0 0.0 2.0 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_4 PF13717.6 gi|298205345|ref|YP_003717797.1| - 0.093 12.7 1.8 8.6 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|298205345|ref|YP_003717797.1| - 0.11 12.7 3.6 0.37 11.0 0.7 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RbpA PF13397.6 gi|298205345|ref|YP_003717797.1| - 0.16 12.6 0.0 1.5 9.5 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase-binding protein Vps36-NZF-N PF16988.5 gi|298205345|ref|YP_003717797.1| - 0.16 11.4 0.5 0.39 10.2 0.5 1.7 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain CpXC PF14353.6 gi|298205345|ref|YP_003717797.1| - 0.18 11.8 0.1 9.5 6.3 0.0 2.2 2 0 0 2 2 2 0 CpXC protein zf-DNL PF05180.12 gi|298205345|ref|YP_003717797.1| - 0.18 11.7 0.8 0.28 11.2 0.8 1.3 1 0 0 1 1 1 0 DNL zinc finger Zn_Tnp_IS1595 PF12760.7 gi|298205345|ref|YP_003717797.1| - 0.24 11.4 3.0 13 5.8 4.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|298205345|ref|YP_003717797.1| - 0.55 10.4 2.4 4.9 7.3 0.2 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|298205345|ref|YP_003717797.1| - 0.58 9.9 4.3 8.9 6.1 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C3H2C3 PF17122.5 gi|298205345|ref|YP_003717797.1| - 0.61 10.2 3.8 2.9 8.0 0.5 2.3 2 0 0 2 2 2 0 Zinc-finger TF_Zn_Ribbon PF08271.12 gi|298205345|ref|YP_003717797.1| - 0.63 9.6 4.7 3.9 7.1 3.4 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-HYPF PF07503.12 gi|298205345|ref|YP_003717797.1| - 0.82 9.5 4.0 3.7 7.4 0.1 2.6 3 0 0 3 3 2 0 HypF finger PcrB PF01884.17 gi|119719544|ref|YP_920039.1| - 3.9e-58 196.6 0.1 4.7e-58 196.3 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|119719544|ref|YP_920039.1| - 3.9e-09 36.3 0.2 4.1e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|119719544|ref|YP_920039.1| - 1.1e-06 28.1 0.9 0.0078 15.6 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|119719544|ref|YP_920039.1| - 0.0001 21.3 0.7 0.00053 18.9 0.2 2.0 2 0 0 2 2 2 1 Tryptophan synthase alpha chain NanE PF04131.14 gi|119719544|ref|YP_920039.1| - 0.00012 21.3 2.3 0.021 14.0 0.2 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.12 gi|119719544|ref|YP_920039.1| - 0.0041 16.5 0.9 0.02 14.3 0.1 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|119719544|ref|YP_920039.1| - 0.0093 15.2 0.3 0.0093 15.2 0.3 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|119719544|ref|YP_920039.1| - 0.024 13.6 0.3 0.37 9.8 0.1 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DpaA_N PF16924.5 gi|119719544|ref|YP_920039.1| - 0.028 14.5 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Ribul_P_3_epim PF00834.19 gi|119719544|ref|YP_920039.1| - 0.036 13.4 0.2 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Pyr_redox PF00070.27 gi|119719544|ref|YP_920039.1| - 0.052 14.1 0.3 0.18 12.4 0.3 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase BtpA PF03437.15 gi|119719544|ref|YP_920039.1| - 0.066 12.6 0.1 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 BtpA family TMP-TENI PF02581.17 gi|119719544|ref|YP_920039.1| - 0.076 12.3 0.4 0.17 11.2 0.1 1.8 2 0 0 2 2 2 0 Thiamine monophosphate synthase PucR PF07905.11 gi|119719544|ref|YP_920039.1| - 0.12 12.7 0.1 0.63 10.3 0.0 2.0 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family HTH_Tnp_1 PF01527.20 gi|119719544|ref|YP_920039.1| - 0.17 12.3 0.0 0.44 10.9 0.0 1.7 1 0 0 1 1 1 0 Transposase MoCF_biosynth PF00994.24 gi|119719544|ref|YP_920039.1| - 0.18 11.5 1.1 20 4.8 0.3 2.6 2 1 1 3 3 3 0 Probable molybdopterin binding domain Sec61_beta PF03911.16 gi|119719545|ref|YP_920040.1| - 2.9e-12 46.4 0.4 3.4e-12 46.2 0.4 1.1 1 0 0 1 1 1 1 Sec61beta family UbiA PF01040.18 gi|119719547|ref|YP_920042.1| - 4.6e-36 124.4 17.7 5.7e-36 124.1 17.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family AAA_25 PF13481.6 gi|119719549|ref|YP_920044.1| - 0.0013 18.4 0.2 0.01 15.4 0.1 2.0 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119719549|ref|YP_920044.1| - 0.021 15.2 0.1 0.037 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain DnaB_C PF03796.15 gi|119719549|ref|YP_920044.1| - 0.082 12.2 0.0 0.089 12.1 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_5 PF07728.14 gi|119719549|ref|YP_920044.1| - 0.099 12.6 0.1 0.2 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) OST3_OST6 PF04756.13 gi|119719550|ref|YP_920045.1| - 1.6e-06 27.7 4.8 2e-06 27.4 4.8 1.0 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF2070 PF09843.9 gi|119719550|ref|YP_920045.1| - 0.88 7.8 9.1 1 7.6 9.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) UPF0242 PF06785.11 gi|119719550|ref|YP_920045.1| - 2.5 8.2 4.6 4.2 7.4 4.6 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Tetraspanin PF00335.20 gi|119719550|ref|YP_920045.1| - 2.6 7.7 7.4 3.4 7.3 7.4 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF4149 PF13664.6 gi|119719550|ref|YP_920045.1| - 2.9 8.2 10.2 0.34 11.2 3.6 2.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4149) STT3 PF02516.14 gi|119719551|ref|YP_920046.1| - 2.6e-38 132.2 26.8 4.4e-38 131.5 26.8 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF1980 PF09323.10 gi|119719551|ref|YP_920046.1| - 0.17 11.8 2.3 0.53 10.2 2.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Nop10p PF04135.12 gi|298205346|ref|YP_003717798.1| - 1.1e-23 83.0 1.8 1.3e-23 82.8 1.8 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|298205346|ref|YP_003717798.1| - 0.006 16.4 2.4 0.0093 15.8 2.4 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.15 gi|298205346|ref|YP_003717798.1| - 0.017 14.7 0.4 0.025 14.2 0.4 1.2 1 0 0 1 1 1 0 RecR protein zf-C3HC4_3 PF13920.6 gi|298205346|ref|YP_003717798.1| - 0.031 14.1 0.7 0.043 13.7 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-NADH-PPase PF09297.11 gi|298205346|ref|YP_003717798.1| - 0.06 13.0 3.5 5.1 6.8 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1258 PF06869.12 gi|298205346|ref|YP_003717798.1| - 0.069 12.6 0.1 0.081 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) PolC_DP2 PF03833.13 gi|298205346|ref|YP_003717798.1| - 0.11 10.3 0.0 0.11 10.3 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.6 gi|298205346|ref|YP_003717798.1| - 0.14 11.9 4.7 1.3 8.8 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|298205346|ref|YP_003717798.1| - 0.21 11.6 0.5 0.28 11.2 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|298205346|ref|YP_003717798.1| - 0.23 11.6 3.4 0.86 9.8 3.5 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L32p PF01783.23 gi|298205346|ref|YP_003717798.1| - 0.27 11.5 2.4 0.46 10.8 2.2 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-ribbon_3 PF13248.6 gi|298205346|ref|YP_003717798.1| - 0.28 10.7 6.8 1.2 8.7 6.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.6 gi|298205346|ref|YP_003717798.1| - 0.29 9.8 1.1 0.36 9.6 1.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TF_Zn_Ribbon PF08271.12 gi|298205346|ref|YP_003717798.1| - 0.59 9.7 4.6 6 6.5 1.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-tcix PF14952.6 gi|298205346|ref|YP_003717798.1| - 8.8 6.0 9.5 4.1 7.1 1.4 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding EIF_2_alpha PF07541.12 gi|119719552|ref|YP_920047.1| - 5.5e-20 71.6 0.0 1.2e-19 70.5 0.0 1.6 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|119719552|ref|YP_920047.1| - 1.4e-11 44.6 0.8 1.5e-10 41.2 0.4 2.2 2 0 0 2 2 2 1 S1 RNA binding domain DUF1633 PF07794.11 gi|119719552|ref|YP_920047.1| - 0.01 14.1 0.1 0.13 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1633) Dermcidin PF15291.6 gi|119719552|ref|YP_920047.1| - 0.097 13.2 0.3 0.33 11.5 0.1 1.9 1 1 1 2 2 2 0 Dermcidin, antibiotic peptide PCAF_N PF06466.11 gi|119719552|ref|YP_920047.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 PCAF (P300/CBP-associated factor) N-terminal domain Ribosomal_S27e PF01667.17 gi|119719553|ref|YP_920048.1| - 3.6e-24 84.2 0.4 4e-24 84.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|119719553|ref|YP_920048.1| - 2.4e-06 26.8 1.7 0.015 14.7 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|119719553|ref|YP_920048.1| - 7.9e-06 25.9 0.1 9.5e-06 25.6 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3797 PF12677.7 gi|119719553|ref|YP_920048.1| - 1.2e-05 25.1 1.2 0.081 12.8 0.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3797) zinc_ribbon_4 PF13717.6 gi|119719553|ref|YP_920048.1| - 2.7e-05 24.0 1.5 0.082 12.9 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ACC PF17848.1 gi|119719553|ref|YP_920048.1| - 0.00017 21.6 2.5 0.22 11.6 0.5 2.2 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_2 PF13240.6 gi|119719553|ref|YP_920048.1| - 0.0002 21.0 1.9 0.25 11.1 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|119719553|ref|YP_920048.1| - 0.00026 20.7 5.1 0.0011 18.7 5.1 1.9 1 1 0 1 1 1 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|119719553|ref|YP_920048.1| - 0.00032 20.5 0.3 0.0032 17.3 0.5 2.0 1 1 1 2 2 2 1 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.19 gi|119719553|ref|YP_920048.1| - 0.00061 19.5 2.6 0.12 12.1 0.7 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger IBR PF01485.21 gi|119719553|ref|YP_920048.1| - 0.001 19.2 0.4 0.0012 19.1 0.4 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain DNA_ligase_ZBD PF03119.16 gi|119719553|ref|YP_920048.1| - 0.0012 18.8 0.6 0.58 10.2 0.1 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain Auto_anti-p27 PF06677.12 gi|119719553|ref|YP_920048.1| - 0.0012 18.9 2.0 0.0093 16.1 2.4 1.9 1 1 1 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|119719553|ref|YP_920048.1| - 0.0013 18.8 2.1 0.0047 17.0 2.3 1.7 1 1 1 2 2 2 1 Zinc ribbon domain DZR PF12773.7 gi|119719553|ref|YP_920048.1| - 0.0015 18.5 0.2 0.0021 18.1 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|119719553|ref|YP_920048.1| - 0.002 18.0 0.2 2.3 8.2 0.0 2.2 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_7 PF02591.15 gi|119719553|ref|YP_920048.1| - 0.0022 18.2 0.4 2 8.7 0.0 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|119719553|ref|YP_920048.1| - 0.0022 18.0 0.5 0.0028 17.6 0.5 1.1 1 0 0 1 1 1 1 Zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|119719553|ref|YP_920048.1| - 0.0023 17.8 0.3 0.003 17.4 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1610 PF07754.11 gi|119719553|ref|YP_920048.1| - 0.0025 17.8 2.2 0.73 9.9 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.12 gi|119719553|ref|YP_920048.1| - 0.0033 16.9 2.2 0.0067 15.9 2.3 1.5 1 1 0 1 1 1 1 TFIIB zinc-binding Tmemb_55A PF09788.9 gi|119719553|ref|YP_920048.1| - 0.0036 16.4 0.3 0.0041 16.2 0.3 1.0 1 0 0 1 1 1 1 Transmembrane protein 55A Zn_Tnp_IS91 PF14319.6 gi|119719553|ref|YP_920048.1| - 0.004 17.1 0.3 0.0049 16.9 0.3 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-C2HC5 PF06221.13 gi|119719553|ref|YP_920048.1| - 0.0078 16.2 0.5 0.012 15.6 0.5 1.3 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zf-LITAF-like PF10601.9 gi|119719553|ref|YP_920048.1| - 0.0094 16.2 2.0 3.1 8.1 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|119719553|ref|YP_920048.1| - 0.014 15.1 1.5 2 8.1 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|119719553|ref|YP_920048.1| - 0.016 14.9 0.7 2 8.2 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-HIT PF04438.16 gi|119719553|ref|YP_920048.1| - 0.02 14.7 0.9 1.5 8.8 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.7 gi|119719553|ref|YP_920048.1| - 0.021 14.8 3.6 0.15 12.1 3.8 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|119719553|ref|YP_920048.1| - 0.022 14.6 1.8 2.5 8.0 0.0 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-IS66 PF13005.7 gi|119719553|ref|YP_920048.1| - 0.025 15.0 3.0 1.6 9.1 0.3 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-BED PF02892.15 gi|119719553|ref|YP_920048.1| - 0.027 14.5 1.3 0.44 10.6 1.3 2.1 1 1 0 1 1 1 0 BED zinc finger zinc_ribbon_12 PF11331.8 gi|119719553|ref|YP_920048.1| - 0.038 13.8 1.2 5.9 6.8 0.0 2.1 1 1 1 2 2 2 0 Probable zinc-ribbon domain zf_UBZ PF18439.1 gi|119719553|ref|YP_920048.1| - 0.043 13.4 1.3 1.9 8.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TackOD1 PF18551.1 gi|119719553|ref|YP_920048.1| - 0.043 13.5 0.2 0.053 13.2 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-C2H2 PF00096.26 gi|119719553|ref|YP_920048.1| - 0.045 14.2 1.1 11 6.8 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF1922 PF09082.10 gi|119719553|ref|YP_920048.1| - 0.046 14.0 0.3 0.054 13.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) Mu-like_Com PF10122.9 gi|119719553|ref|YP_920048.1| - 0.047 13.2 6.5 0.65 9.5 6.7 2.0 1 1 0 1 1 1 0 Mu-like prophage protein Com Zn_ribbon_recom PF13408.6 gi|119719553|ref|YP_920048.1| - 0.058 13.9 2.4 2.5 8.7 0.1 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_9 PF14369.6 gi|119719553|ref|YP_920048.1| - 0.059 13.6 1.8 3.4 8.0 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|119719553|ref|YP_920048.1| - 0.06 13.3 0.6 0.16 12.0 0.6 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-tcix PF14952.6 gi|119719553|ref|YP_920048.1| - 0.068 12.8 2.8 2.3 7.9 0.6 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding CpXC PF14353.6 gi|119719553|ref|YP_920048.1| - 0.069 13.2 2.4 3.7 7.6 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zf-Mss51 PF13824.6 gi|119719553|ref|YP_920048.1| - 0.1 12.7 3.2 3 8.0 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2752 PF10825.8 gi|119719553|ref|YP_920048.1| - 0.12 12.4 2.0 6.3 6.9 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2752) zf-H2C2_2 PF13465.6 gi|119719553|ref|YP_920048.1| - 0.12 12.8 2.6 1.7 9.2 0.4 2.2 2 0 0 2 2 2 0 Zinc-finger double domain YacG PF03884.14 gi|119719553|ref|YP_920048.1| - 0.13 12.0 1.7 6 6.7 0.4 2.2 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zf-ISL3 PF14690.6 gi|119719553|ref|YP_920048.1| - 0.13 12.9 4.2 1.7 9.4 0.1 2.5 1 1 2 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Desulfoferrod_N PF06397.12 gi|119719553|ref|YP_920048.1| - 0.18 11.5 3.6 4.5 7.0 0.1 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Nop10p PF04135.12 gi|119719553|ref|YP_920048.1| - 0.18 11.9 1.7 11 6.2 1.7 2.2 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zf-TFIIB PF13453.6 gi|119719553|ref|YP_920048.1| - 0.19 11.1 3.5 5.5 6.4 4.4 2.1 1 1 2 3 3 3 0 Transcription factor zinc-finger DUF951 PF06107.11 gi|119719553|ref|YP_920048.1| - 0.2 11.6 2.1 9.7 6.2 0.2 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) HECT_2 PF09814.9 gi|119719553|ref|YP_920048.1| - 0.22 10.4 0.5 2.2 7.0 0.5 1.9 1 1 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding zf_C2H2_10 PF18414.1 gi|119719553|ref|YP_920048.1| - 0.29 10.7 3.8 2 8.0 0.8 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-C2H2_3 PF13878.6 gi|119719553|ref|YP_920048.1| - 0.39 10.6 4.0 5.9 6.8 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1 PF03811.13 gi|119719553|ref|YP_920048.1| - 0.5 10.1 4.4 2.3 8.0 0.1 2.5 3 0 0 3 3 2 0 InsA N-terminal domain YhfH PF14149.6 gi|119719553|ref|YP_920048.1| - 0.62 10.1 5.2 3.2 7.8 0.7 2.2 1 1 1 2 2 2 0 YhfH-like protein TFIIS_C PF01096.18 gi|119719553|ref|YP_920048.1| - 0.66 9.9 5.3 91 3.0 5.3 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Anti-TRAP PF15777.5 gi|119719553|ref|YP_920048.1| - 0.86 9.6 4.1 3 7.9 4.0 1.8 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-CCHC_6 PF15288.6 gi|119719553|ref|YP_920048.1| - 6.7 6.6 8.6 23 4.9 0.2 2.8 3 0 0 3 3 3 0 Zinc knuckle Ribosomal_L44 PF00935.19 gi|119719554|ref|YP_920049.1| - 1.6e-27 95.7 12.3 1.6e-27 95.7 12.3 1.4 1 1 1 2 2 2 1 Ribosomal protein L44 zf-FPG_IleRS PF06827.14 gi|119719554|ref|YP_920049.1| - 0.0028 17.5 3.6 0.051 13.4 0.4 2.4 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS CxC5 PF18718.1 gi|119719554|ref|YP_920049.1| - 0.015 15.4 6.4 1 9.4 1.1 2.1 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases zinc_ribbon_4 PF13717.6 gi|119719554|ref|YP_920049.1| - 0.036 14.0 4.2 0.59 10.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.22 gi|119719554|ref|YP_920049.1| - 0.036 13.9 1.0 0.12 12.3 0.1 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rubredoxin PF00301.20 gi|119719554|ref|YP_920049.1| - 0.039 14.0 2.3 0.2 11.7 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin PHD_4 PF16866.5 gi|119719554|ref|YP_920049.1| - 0.073 13.2 0.2 0.25 11.5 0.0 1.8 2 0 0 2 2 2 0 PHD-finger RecR PF02132.15 gi|119719554|ref|YP_920049.1| - 0.12 11.9 3.1 0.29 10.7 0.3 2.2 2 0 0 2 2 2 0 RecR protein CpXC PF14353.6 gi|119719554|ref|YP_920049.1| - 0.19 11.8 2.4 5.9 7.0 0.2 2.1 1 1 0 2 2 2 0 CpXC protein Rubredoxin_2 PF18073.1 gi|119719554|ref|YP_920049.1| - 0.19 11.5 3.2 1.7 8.4 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Rpr2 PF04032.16 gi|119719554|ref|YP_920049.1| - 0.25 11.7 5.1 0.61 10.4 5.1 1.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-C2H2_3 PF13878.6 gi|119719554|ref|YP_920049.1| - 0.3 11.0 3.0 0.7 9.8 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-Mss51 PF13824.6 gi|119719554|ref|YP_920049.1| - 0.63 10.2 4.6 3 8.0 4.9 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Mis12 PF05859.12 gi|119719555|ref|YP_920050.1| - 0.064 13.3 0.2 0.088 12.9 0.2 1.1 1 0 0 1 1 1 0 Mis12 protein GTP_EFTU PF00009.27 gi|119719557|ref|YP_920052.1| - 1.4e-53 181.3 0.0 1.6e-53 181.2 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|119719557|ref|YP_920052.1| - 4.2e-37 126.9 0.0 9.5e-37 125.7 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|119719557|ref|YP_920052.1| - 1.9e-17 63.4 0.9 4e-17 62.4 0.9 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|119719557|ref|YP_920052.1| - 7.8e-06 26.0 0.0 3.9e-05 23.7 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|119719557|ref|YP_920052.1| - 2.2e-05 24.3 0.6 5.6e-05 23.0 0.6 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 RsgA_GTPase PF03193.16 gi|119719557|ref|YP_920052.1| - 0.012 15.6 0.1 0.35 10.7 0.0 2.3 1 1 1 2 2 2 0 RsgA GTPase Gtr1_RagA PF04670.12 gi|119719557|ref|YP_920052.1| - 0.013 14.9 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region SRPRB PF09439.10 gi|119719557|ref|YP_920052.1| - 0.06 12.8 0.0 1.8 8.0 0.0 2.4 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit Ribosomal_S10 PF00338.22 gi|119719558|ref|YP_920053.1| - 5.1e-24 84.3 0.0 5.9e-24 84.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|119719558|ref|YP_920053.1| - 0.00036 21.3 0.1 0.00072 20.3 0.1 1.5 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain AlkA_N PF06029.11 gi|119719558|ref|YP_920053.1| - 0.082 13.2 0.3 15 5.9 0.0 2.1 2 0 0 2 2 2 0 AlkA N-terminal domain zf-ZPR1 PF03367.13 gi|119719559|ref|YP_920054.1| - 1.8e-30 105.9 0.0 2.1e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain ADK_lid PF05191.14 gi|119719559|ref|YP_920054.1| - 0.025 14.6 0.6 0.34 10.9 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Ogr_Delta PF04606.12 gi|119719559|ref|YP_920054.1| - 0.025 14.6 0.1 0.061 13.3 0.1 1.7 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger DZR PF12773.7 gi|119719559|ref|YP_920054.1| - 0.037 14.1 0.1 0.056 13.5 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|119719559|ref|YP_920054.1| - 0.099 13.0 0.1 0.17 12.3 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.11 gi|119719559|ref|YP_920054.1| - 0.1 12.3 0.5 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119719559|ref|YP_920054.1| - 0.2 11.1 3.6 5.9 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719559|ref|YP_920054.1| - 0.46 10.3 2.7 9.5 6.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|119719560|ref|YP_920055.1| - 2.4e-13 50.0 2.3 3.3e-13 49.5 2.3 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|119719560|ref|YP_920055.1| - 0.0035 16.7 0.7 0.046 13.1 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119719560|ref|YP_920055.1| - 0.0062 16.0 1.3 0.01 15.3 1.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|119719560|ref|YP_920055.1| - 0.0088 16.0 0.3 0.013 15.4 0.3 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|119719560|ref|YP_920055.1| - 0.018 15.0 0.2 0.028 14.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYDLN_acid PF09538.10 gi|119719560|ref|YP_920055.1| - 0.023 15.4 0.0 0.028 15.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) GFA PF04828.14 gi|119719560|ref|YP_920055.1| - 0.034 14.5 0.2 6.8 7.1 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_4 PF13717.6 gi|119719560|ref|YP_920055.1| - 0.035 14.0 1.6 0.096 12.6 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719560|ref|YP_920055.1| - 0.041 13.6 0.8 0.54 10.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|119719560|ref|YP_920055.1| - 0.043 13.2 1.9 1.1 8.7 3.1 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.6 gi|119719560|ref|YP_920055.1| - 0.049 13.4 1.0 3.4 7.5 0.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|119719560|ref|YP_920055.1| - 0.068 13.2 0.2 1.7 8.7 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2_3 PF13878.6 gi|119719560|ref|YP_920055.1| - 0.073 12.9 0.3 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Trm112p PF03966.16 gi|119719560|ref|YP_920055.1| - 0.095 13.3 1.4 0.25 11.9 1.4 1.7 1 1 0 1 1 1 0 Trm112p-like protein HypA PF01155.19 gi|119719560|ref|YP_920055.1| - 0.1 12.7 1.2 0.15 12.1 0.2 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA IRK_N PF08466.10 gi|119719560|ref|YP_920055.1| - 0.11 12.7 0.2 0.19 11.9 0.2 1.3 1 0 0 1 1 1 0 Inward rectifier potassium channel N-terminal DUF2318 PF10080.9 gi|119719560|ref|YP_920055.1| - 0.12 12.5 0.1 0.18 12.0 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Zn-ribbon_8 PF09723.10 gi|119719560|ref|YP_920055.1| - 0.17 12.0 3.8 33 4.7 0.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119719560|ref|YP_920055.1| - 0.22 11.5 0.2 0.22 11.5 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|119719560|ref|YP_920055.1| - 0.47 10.1 0.1 0.47 10.1 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-HIT PF04438.16 gi|119719560|ref|YP_920055.1| - 0.84 9.6 3.8 2.6 8.0 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_9 PF14369.6 gi|119719560|ref|YP_920055.1| - 1.1 9.6 3.3 41 4.5 4.2 2.2 1 1 1 2 2 2 0 zinc-ribbon zf-RING_4 PF14570.6 gi|119719560|ref|YP_920055.1| - 2 8.3 4.9 15 5.5 0.4 2.2 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain NTP_transf_2 PF01909.23 gi|119719561|ref|YP_920056.1| - 1.3e-05 25.4 0.3 3.9e-05 23.9 0.3 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119719561|ref|YP_920056.1| - 0.0054 16.8 0.0 0.0097 16.0 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_24 PF13412.6 gi|119719561|ref|YP_920056.1| - 0.014 14.9 0.1 0.14 11.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Helicase_C PF00271.31 gi|119719562|ref|YP_920057.1| - 2.1e-20 73.1 0.1 7.5e-19 68.1 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119719562|ref|YP_920057.1| - 1.6e-17 64.0 0.1 4.2e-16 59.4 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|119719562|ref|YP_920057.1| - 5.1e-06 25.9 0.0 8.4e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase RecX PF02631.16 gi|119719562|ref|YP_920057.1| - 0.0052 17.2 0.1 0.079 13.4 0.0 2.7 3 0 0 3 3 3 1 RecX family Ribosomal_S3Ae PF01015.18 gi|119719563|ref|YP_920058.1| - 4.9e-63 212.4 7.5 5.9e-63 212.1 7.5 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DHHA1 PF02272.19 gi|119719564|ref|YP_920059.1| - 1.1e-10 42.1 2.6 1.5e-09 38.4 3.6 2.1 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|119719564|ref|YP_920059.1| - 1.4e-08 34.8 0.0 2.7e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 DHH family NTase_sub_bind PF08780.11 gi|119719565|ref|YP_920060.1| - 0.031 14.2 0.1 0.069 13.1 0.1 1.5 1 1 1 2 2 2 0 Nucleotidyltransferase substrate binding protein like SATase_N PF06426.14 gi|119719565|ref|YP_920060.1| - 0.035 14.5 0.1 0.043 14.2 0.1 1.1 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal Prefoldin_2 PF01920.20 gi|119719566|ref|YP_920061.1| - 1e-15 57.5 7.3 1.2e-15 57.4 7.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit DegS PF05384.11 gi|119719566|ref|YP_920061.1| - 0.043 13.3 8.9 0.62 9.5 4.7 2.0 1 1 1 2 2 2 0 Sensor protein DegS TcdA_TcdB PF12919.7 gi|119719566|ref|YP_920061.1| - 0.056 12.7 0.5 0.066 12.5 0.5 1.1 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain Snapin_Pallidin PF14712.6 gi|119719566|ref|YP_920061.1| - 0.1 13.0 6.0 1.7 9.1 0.2 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Adeno_E3A PF05248.12 gi|119719566|ref|YP_920061.1| - 0.16 12.0 0.1 0.2 11.7 0.1 1.1 1 0 0 1 1 1 0 Adenovirus E3A DUF3450 PF11932.8 gi|119719566|ref|YP_920061.1| - 0.19 11.0 7.4 1.3 8.3 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF3287 PF11690.8 gi|119719566|ref|YP_920061.1| - 0.22 11.2 3.5 0.39 10.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) IFT57 PF10498.9 gi|119719566|ref|YP_920061.1| - 0.53 9.2 5.1 4.7 6.1 0.2 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF4140 PF13600.6 gi|119719566|ref|YP_920061.1| - 0.6 10.6 5.2 8.1 7.0 1.2 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) JIP_LZII PF16471.5 gi|119719566|ref|YP_920061.1| - 1 9.6 11.8 3.9 7.7 6.4 2.1 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II Prefoldin PF02996.17 gi|119719566|ref|YP_920061.1| - 1 9.3 8.4 5.8 6.8 1.9 2.3 1 1 1 2 2 2 0 Prefoldin subunit DUF737 PF05300.11 gi|119719566|ref|YP_920061.1| - 1.1 9.5 6.9 1.8 8.9 6.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF737) Fzo_mitofusin PF04799.13 gi|119719566|ref|YP_920061.1| - 2.8 7.5 8.4 2.3 7.7 2.9 2.1 1 1 0 2 2 2 0 fzo-like conserved region SlyX PF04102.12 gi|119719566|ref|YP_920061.1| - 6.2 7.5 9.9 4 8.1 1.0 2.5 2 1 0 2 2 2 0 SlyX DUF4078 PF13300.6 gi|119719566|ref|YP_920061.1| - 6.7 7.1 8.9 14 6.1 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4078) FTA4 PF13093.6 gi|119719566|ref|YP_920061.1| - 7.2 6.4 9.5 1.6 8.6 3.6 1.9 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 CarboxypepD_reg PF13620.6 gi|119719567|ref|YP_920062.1| - 9.9e-13 48.2 9.3 5.8e-06 26.5 1.0 6.6 7 0 0 7 7 7 3 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|119719567|ref|YP_920062.1| - 9.9e-06 25.5 0.2 0.00085 19.3 0.8 3.4 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|119719567|ref|YP_920062.1| - 5e-05 23.2 6.5 0.091 12.8 0.2 5.2 5 0 0 5 5 5 2 CarboxypepD_reg-like domain Big_3_5 PF16640.5 gi|119719567|ref|YP_920062.1| - 0.027 14.7 9.4 0.24 11.6 4.4 3.9 4 1 0 4 4 4 0 Bacterial Ig-like domain (group 3) AraC_binding_2 PF14525.6 gi|119719567|ref|YP_920062.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 AraC-binding-like domain Radical_SAM PF04055.21 gi|119719568|ref|YP_920063.1| - 4.6e-15 56.4 0.0 8.1e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119719568|ref|YP_920063.1| - 0.033 14.3 0.0 0.061 13.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain tRNA-synt_His PF13393.6 gi|119719569|ref|YP_920064.1| - 8.2e-63 212.5 0.0 1.2e-62 212.0 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|119719569|ref|YP_920064.1| - 7.7e-16 58.0 0.3 1.8e-15 56.8 0.3 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|119719569|ref|YP_920064.1| - 2.1e-10 40.9 0.0 8.5e-10 38.9 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|119719569|ref|YP_920064.1| - 0.015 14.4 0.4 2.9 6.9 0.1 2.8 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|119719569|ref|YP_920064.1| - 0.035 13.6 0.0 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) bact-PGI_C PF10432.9 gi|119719570|ref|YP_920065.1| - 4.7e-38 130.6 0.0 1.2e-37 129.3 0.0 1.7 2 0 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|119719570|ref|YP_920065.1| - 1.7e-06 27.9 0.1 8.4e-06 25.7 0.1 2.2 2 2 1 3 3 3 1 SIS domain SIS_2 PF13580.6 gi|119719570|ref|YP_920065.1| - 0.019 15.0 0.0 0.043 13.8 0.0 1.6 1 0 0 1 1 1 0 SIS domain PAC2 PF09754.9 gi|119719570|ref|YP_920065.1| - 0.094 12.7 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 PAC2 family EF1_GNE PF00736.19 gi|119719571|ref|YP_920066.1| - 1e-17 64.1 0.0 1.1e-17 64.0 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain RPN13_C PF16550.5 gi|119719571|ref|YP_920066.1| - 0.1 12.8 0.1 2.5 8.3 0.0 2.1 1 1 1 2 2 2 0 UCH-binding domain Glu-tRNAGln PF02686.15 gi|119719571|ref|YP_920066.1| - 0.1 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit DUF1610 PF07754.11 gi|119719572|ref|YP_920067.1| - 4.7e-14 52.0 14.8 5.5e-13 48.6 5.5 2.5 3 0 0 3 3 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|119719572|ref|YP_920067.1| - 5.5e-06 25.9 20.0 0.00011 21.8 3.6 3.1 2 2 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|119719572|ref|YP_920067.1| - 9.7e-05 22.3 11.6 0.0048 16.9 11.9 2.1 1 1 0 1 1 1 1 Double zinc ribbon Rhodanese_C PF12368.8 gi|119719572|ref|YP_920067.1| - 0.00065 20.0 6.7 0.00076 19.8 6.7 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal HypA PF01155.19 gi|119719572|ref|YP_920067.1| - 0.0018 18.3 11.1 0.013 15.5 0.4 2.0 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|119719572|ref|YP_920067.1| - 0.0025 17.1 16.7 0.089 12.2 0.2 4.0 4 0 0 4 4 4 2 zinc-ribbon domain zf-CHY PF05495.12 gi|119719572|ref|YP_920067.1| - 0.0031 18.0 9.6 0.052 14.0 10.0 2.0 1 1 0 1 1 1 1 CHY zinc finger HscB_4_cys PF18256.1 gi|119719572|ref|YP_920067.1| - 0.0036 17.1 14.0 0.011 15.5 3.3 3.5 1 1 1 2 2 2 1 Co-chaperone HscB tetracysteine metal binding motif C1_2 PF03107.16 gi|119719572|ref|YP_920067.1| - 0.0041 17.4 11.5 0.099 13.0 3.8 2.1 1 1 1 2 2 2 2 C1 domain PolC_DP2 PF03833.13 gi|119719572|ref|YP_920067.1| - 0.0095 13.9 4.4 0.01 13.7 4.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zinc_ribbon_10 PF10058.9 gi|119719572|ref|YP_920067.1| - 0.013 15.2 16.8 0.85 9.4 3.0 3.7 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1272 PF06906.11 gi|119719572|ref|YP_920067.1| - 0.015 15.4 11.0 0.47 10.6 1.4 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf_UBZ PF18439.1 gi|119719572|ref|YP_920067.1| - 0.018 14.6 15.0 0.99 9.1 0.2 4.0 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|119719572|ref|YP_920067.1| - 0.02 15.0 19.7 2.3 8.4 0.1 4.0 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|119719572|ref|YP_920067.1| - 0.024 14.6 11.6 0.81 9.7 6.5 3.5 2 1 0 2 2 2 0 Nudix N-terminal zf-B_box PF00643.24 gi|119719572|ref|YP_920067.1| - 0.025 14.7 7.5 0.2 11.8 4.8 2.5 2 1 0 2 2 2 0 B-box zinc finger DUF35_N PF12172.8 gi|119719572|ref|YP_920067.1| - 0.026 14.4 13.6 1.9 8.5 0.0 3.9 3 1 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PhnA_Zn_Ribbon PF08274.12 gi|119719572|ref|YP_920067.1| - 0.026 14.5 12.7 1.3 9.1 0.1 3.7 1 1 2 3 3 3 0 PhnA Zinc-Ribbon zf-RING_9 PF13901.6 gi|119719572|ref|YP_920067.1| - 0.027 14.4 5.5 0.032 14.2 5.5 1.0 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon FYVE_2 PF02318.16 gi|119719572|ref|YP_920067.1| - 0.043 14.0 5.4 0.052 13.8 5.4 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zinc-ribbons_6 PF07191.12 gi|119719572|ref|YP_920067.1| - 0.049 13.6 9.6 1.2 9.2 9.8 2.1 1 1 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|119719572|ref|YP_920067.1| - 0.057 13.3 12.8 0.3 11.0 1.3 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.13 gi|119719572|ref|YP_920067.1| - 0.064 13.2 9.7 0.16 12.0 4.4 2.2 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zinc_ribbon_4 PF13717.6 gi|119719572|ref|YP_920067.1| - 0.067 13.1 17.6 0.49 10.4 0.2 4.0 2 1 1 4 4 4 0 zinc-ribbon domain IBR PF01485.21 gi|119719572|ref|YP_920067.1| - 0.1 12.9 10.7 0.23 11.7 5.9 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zf-MYND PF01753.18 gi|119719572|ref|YP_920067.1| - 0.1 12.7 12.1 0.33 11.1 0.6 2.1 2 0 0 2 2 2 0 MYND finger zf-Mss51 PF13824.6 gi|119719572|ref|YP_920067.1| - 0.12 12.5 14.2 7.3 6.8 3.0 3.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Prok-RING_1 PF14446.6 gi|119719572|ref|YP_920067.1| - 0.13 12.3 10.9 0.29 11.1 1.7 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.11 gi|119719572|ref|YP_920067.1| - 0.15 12.2 10.8 2 8.6 4.6 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Rubredoxin_2 PF18073.1 gi|119719572|ref|YP_920067.1| - 0.22 11.3 21.3 0.8 9.5 0.1 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-UBR PF02207.20 gi|119719572|ref|YP_920067.1| - 0.27 11.4 8.5 4.1 7.6 8.5 2.2 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) A2L_zn_ribbon PF08792.10 gi|119719572|ref|YP_920067.1| - 0.32 10.8 17.7 1.1 9.1 5.4 3.8 2 2 0 2 2 2 0 A2L zinc ribbon domain DUF2321 PF10083.9 gi|119719572|ref|YP_920067.1| - 0.43 10.2 6.6 0.21 11.2 3.4 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Zn-ribbon_8 PF09723.10 gi|119719572|ref|YP_920067.1| - 0.46 10.6 17.6 0.18 11.9 2.9 3.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-HIT PF04438.16 gi|119719572|ref|YP_920067.1| - 0.47 10.4 20.8 1.4 8.8 8.0 3.3 2 2 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.7 gi|119719572|ref|YP_920067.1| - 0.48 10.4 23.8 1.5 8.9 0.6 3.8 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-RING_5 PF14634.6 gi|119719572|ref|YP_920067.1| - 0.53 10.3 11.8 5.6 7.0 11.8 2.4 1 1 0 1 1 1 0 zinc-RING finger domain Sgf11 PF08209.11 gi|119719572|ref|YP_920067.1| - 0.54 9.9 17.1 1.7 8.3 0.5 3.9 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) Zn_ribbon_SprT PF17283.2 gi|119719572|ref|YP_920067.1| - 0.6 10.1 20.3 31 4.6 0.3 4.0 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf_C2H2_13 PF18508.1 gi|119719572|ref|YP_920067.1| - 0.63 9.7 0.1 0.63 9.7 0.1 3.3 1 1 1 3 3 3 0 Zinc finger domain zf_C2H2_10 PF18414.1 gi|119719572|ref|YP_920067.1| - 0.64 9.6 14.8 0.6 9.7 0.8 3.9 4 0 0 4 4 4 0 C2H2 type zinc-finger zf-C2H2 PF00096.26 gi|119719572|ref|YP_920067.1| - 0.77 10.3 14.3 8.7 7.0 0.1 4.0 4 0 0 4 4 4 0 Zinc finger, C2H2 type ZZ PF00569.17 gi|119719572|ref|YP_920067.1| - 1.4 8.8 10.6 2.8 7.8 3.0 2.9 3 0 0 3 3 3 0 Zinc finger, ZZ type zf-RING_7 PF02591.15 gi|119719572|ref|YP_920067.1| - 1.6 9.0 0.2 1.6 9.0 0.2 3.4 3 1 0 3 3 2 0 C4-type zinc ribbon domain Auto_anti-p27 PF06677.12 gi|119719572|ref|YP_920067.1| - 1.6 8.9 14.7 0.38 10.9 1.9 2.4 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NRDD PF13597.6 gi|119719572|ref|YP_920067.1| - 1.8 7.3 12.0 2.5 6.8 4.4 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-C6H2 PF15801.5 gi|119719572|ref|YP_920067.1| - 2.1 8.7 11.0 3 8.2 2.8 2.5 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding zf-TFIIB PF13453.6 gi|119719572|ref|YP_920067.1| - 2.5 7.5 15.1 26 4.2 0.2 3.5 2 1 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS91 PF14319.6 gi|119719572|ref|YP_920067.1| - 2.6 8.2 10.4 3.4 7.8 0.6 2.0 1 1 0 1 1 1 0 Transposase zinc-binding domain TFIIS_C PF01096.18 gi|119719572|ref|YP_920067.1| - 2.8 7.9 16.2 17 5.4 0.4 4.0 2 1 3 5 5 5 0 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|119719572|ref|YP_920067.1| - 2.8 7.6 9.6 0.87 9.2 0.3 2.1 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-dskA_traR PF01258.17 gi|119719572|ref|YP_920067.1| - 3.1 7.8 12.6 5.2 7.1 0.2 3.6 3 1 1 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger NMD3 PF04981.13 gi|119719572|ref|YP_920067.1| - 3.9 6.9 8.7 4.8 6.6 8.7 1.1 1 0 0 1 1 1 0 NMD3 family RNHCP PF12647.7 gi|119719572|ref|YP_920067.1| - 4.2 7.4 11.0 6.5 6.8 1.1 2.9 1 1 2 3 3 3 0 RNHCP domain TF_Zn_Ribbon PF08271.12 gi|119719572|ref|YP_920067.1| - 4.4 6.9 19.0 4.6 6.8 5.3 3.3 1 1 1 2 2 2 0 TFIIB zinc-binding DUF3268 PF11672.8 gi|119719572|ref|YP_920067.1| - 5.1 7.5 9.3 1.8 8.9 5.3 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain DNA_RNApol_7kD PF03604.13 gi|119719572|ref|YP_920067.1| - 5.5 6.8 15.5 0.4 10.4 2.4 3.3 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF2072 PF09845.9 gi|119719572|ref|YP_920067.1| - 5.8 7.2 11.9 0.17 12.1 1.0 2.1 1 1 1 2 2 2 0 Zn-ribbon containing protein Ribosomal_L32p PF01783.23 gi|119719572|ref|YP_920067.1| - 6.1 7.2 12.1 2.7e+02 1.9 7.5 3.2 1 1 1 2 2 2 0 Ribosomal L32p protein family PHD PF00628.29 gi|119719572|ref|YP_920067.1| - 7 6.6 14.4 1.2e+02 2.7 14.4 3.2 1 1 0 1 1 1 0 PHD-finger Ribosomal_L37ae PF01780.19 gi|119719572|ref|YP_920067.1| - 8 6.6 12.6 8.5 6.5 0.3 3.3 1 1 2 3 3 3 0 Ribosomal L37ae protein family Anti-TRAP PF15777.5 gi|119719572|ref|YP_920067.1| - 8.3 6.5 14.7 0.22 11.5 1.7 2.6 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein ADK_lid PF05191.14 gi|119719572|ref|YP_920067.1| - 8.7 6.4 13.1 13 5.9 0.1 3.6 2 1 1 3 3 3 0 Adenylate kinase, active site lid zf-NADH-PPase PF09297.11 gi|119719572|ref|YP_920067.1| - 9.6 6.0 16.6 1 9.0 3.0 3.3 2 2 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-H2C2_2 PF13465.6 gi|119719572|ref|YP_920067.1| - 10 6.8 18.8 9.9 6.8 1.4 3.9 3 1 1 4 4 4 0 Zinc-finger double domain HypA PF01155.19 gi|119719573|ref|YP_920068.1| - 0.022 14.8 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2157 PF09925.9 gi|119719573|ref|YP_920068.1| - 0.051 13.4 2.7 0.069 12.9 2.7 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Mu-like_Com PF10122.9 gi|119719573|ref|YP_920068.1| - 0.054 12.9 0.8 0.1 12.0 0.8 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com zinc_ribbon_13 PF09855.9 gi|119719573|ref|YP_920068.1| - 0.073 13.2 0.4 2.4 8.4 0.0 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TFIIS_C PF01096.18 gi|119719573|ref|YP_920068.1| - 0.074 12.9 0.2 7 6.6 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C4_Topoisom PF01396.19 gi|119719573|ref|YP_920068.1| - 0.1 12.4 3.3 0.12 12.1 0.4 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|119719573|ref|YP_920068.1| - 0.19 11.9 2.5 0.44 10.7 2.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|119719573|ref|YP_920068.1| - 0.27 11.0 4.5 1.3 8.9 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF4131 PF13567.6 gi|119719573|ref|YP_920068.1| - 0.63 9.7 4.1 1.2 8.8 4.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1936 PF09151.10 gi|119719573|ref|YP_920068.1| - 0.87 9.6 5.0 3 7.8 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) RNA_POL_M_15KD PF02150.16 gi|119719573|ref|YP_920068.1| - 5.7 6.9 5.4 3.2 7.7 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_S27e PF01667.17 gi|119719574|ref|YP_920069.1| - 0.0022 17.6 11.6 0.042 13.5 0.1 2.7 2 1 0 2 2 2 2 Ribosomal protein S27 DZR PF12773.7 gi|119719574|ref|YP_920069.1| - 0.034 14.2 14.9 0.24 11.5 4.0 2.8 1 1 1 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|119719574|ref|YP_920069.1| - 0.097 12.6 16.8 1 9.4 13.8 2.9 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 C1_2 PF03107.16 gi|119719574|ref|YP_920069.1| - 0.11 12.9 18.7 0.25 11.7 8.2 3.0 1 1 2 3 3 3 0 C1 domain tRNA-synt_1g PF09334.11 gi|119719574|ref|YP_920069.1| - 0.18 10.5 1.3 0.21 10.3 1.3 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) ADK_lid PF05191.14 gi|119719574|ref|YP_920069.1| - 0.25 11.4 15.0 0.1 12.6 7.1 2.8 2 2 0 2 2 2 0 Adenylate kinase, active site lid zinc-ribbons_6 PF07191.12 gi|119719574|ref|YP_920069.1| - 0.26 11.3 11.1 0.54 10.3 9.5 2.3 2 1 0 2 2 2 0 zinc-ribbons DUF1272 PF06906.11 gi|119719574|ref|YP_920069.1| - 0.32 11.1 9.3 0.13 12.4 5.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Rhodanese_C PF12368.8 gi|119719574|ref|YP_920069.1| - 0.4 11.1 11.9 3.7 8.0 12.3 2.4 1 1 1 2 2 2 0 Rhodanase C-terminal DUF2752 PF10825.8 gi|119719574|ref|YP_920069.1| - 0.65 10.1 0.0 0.65 10.1 0.0 3.2 3 1 1 4 4 3 0 Protein of unknown function (DUF2752) zf-B_box PF00643.24 gi|119719574|ref|YP_920069.1| - 0.82 9.9 14.0 1.5 9.0 6.7 3.4 2 1 1 3 3 3 0 B-box zinc finger zf-C2HC5 PF06221.13 gi|119719574|ref|YP_920069.1| - 2 8.5 18.3 2.1 8.4 7.3 2.9 1 1 2 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-RING_5 PF14634.6 gi|119719574|ref|YP_920069.1| - 2.1 8.4 14.9 0.22 11.5 10.6 1.6 2 0 0 2 2 2 0 zinc-RING finger domain DUF2688 PF10892.8 gi|119719574|ref|YP_920069.1| - 2.9 7.4 13.4 4.5 6.8 0.3 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF2688) zinc_ribbon_2 PF13240.6 gi|119719574|ref|YP_920069.1| - 3.6 7.4 25.4 0.11 12.2 5.4 4.0 3 1 0 4 4 4 0 zinc-ribbon domain PAPS_reduct PF01507.19 gi|119719575|ref|YP_920070.1| - 1.8e-41 142.1 0.0 2.9e-41 141.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.7 gi|119719575|ref|YP_920070.1| - 2.9e-06 27.7 10.4 6.2e-06 26.7 10.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain NAD_synthase PF02540.17 gi|119719575|ref|YP_920070.1| - 6.2e-06 25.5 0.0 1.1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Fer4_10 PF13237.6 gi|119719575|ref|YP_920070.1| - 1.1e-05 25.4 10.5 3.1e-05 24.0 10.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119719575|ref|YP_920070.1| - 2.3e-05 24.4 8.1 5e-05 23.4 8.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119719575|ref|YP_920070.1| - 2.9e-05 24.4 4.8 0.0041 17.5 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119719575|ref|YP_920070.1| - 5.8e-05 23.2 10.1 5.8e-05 23.2 10.1 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119719575|ref|YP_920070.1| - 0.00025 20.7 10.2 0.0034 17.1 4.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119719575|ref|YP_920070.1| - 0.0075 16.3 2.4 0.0075 16.3 2.4 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|119719575|ref|YP_920070.1| - 0.0081 17.0 3.2 1.7 9.5 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|119719575|ref|YP_920070.1| - 0.031 14.4 6.9 0.11 12.6 1.9 2.4 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|119719575|ref|YP_920070.1| - 0.056 13.6 2.2 0.11 12.6 2.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain QueC PF06508.13 gi|119719575|ref|YP_920070.1| - 0.065 12.7 0.0 0.065 12.7 0.0 1.8 2 0 0 2 2 1 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|119719575|ref|YP_920070.1| - 0.065 12.0 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase Fer4_6 PF12837.7 gi|119719575|ref|YP_920070.1| - 0.071 13.2 10.3 0.053 13.6 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain ATP_bind_3 PF01171.20 gi|119719575|ref|YP_920070.1| - 0.087 12.6 0.0 4.3 7.1 0.0 2.8 3 0 0 3 3 3 0 PP-loop family Fer4_17 PF13534.6 gi|119719575|ref|YP_920070.1| - 0.31 11.6 13.3 0.71 10.5 3.9 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119719575|ref|YP_920070.1| - 0.43 11.5 12.8 0.31 12.0 1.4 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|119719575|ref|YP_920070.1| - 0.76 10.9 16.7 3.7 8.7 5.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|119719575|ref|YP_920070.1| - 0.83 10.2 8.8 0.15 12.6 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|119719575|ref|YP_920070.1| - 3.9 8.2 10.8 0.87 10.3 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Topo-VIb_trans PF09239.11 gi|119719576|ref|YP_920071.1| - 7.5e-59 198.1 0.0 1.4e-58 197.2 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|119719576|ref|YP_920071.1| - 5.1e-13 49.5 0.0 8.9e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|119719576|ref|YP_920071.1| - 8.2e-11 41.9 0.0 1.6e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|119719576|ref|YP_920071.1| - 0.0022 16.8 1.1 0.0052 15.6 0.0 1.8 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) S1FA PF04689.13 gi|119719576|ref|YP_920071.1| - 0.098 12.8 0.2 0.3 11.3 0.2 1.8 1 0 0 1 1 1 0 DNA binding protein S1FA TP6A_N PF04406.14 gi|119719577|ref|YP_920072.1| - 1.1e-20 73.4 0.1 2.3e-20 72.3 0.1 1.6 1 0 0 1 1 1 1 Type IIB DNA topoisomerase AsnC_trans_reg PF01037.21 gi|119719578|ref|YP_920073.1| - 2.2e-09 37.1 0.0 2.4e-09 37.0 0.0 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|119719578|ref|YP_920073.1| - 0.0011 19.0 0.0 0.0015 18.6 0.0 1.1 1 0 0 1 1 1 1 NapD protein FYRC PF05965.14 gi|119719579|ref|YP_920074.1| - 0.19 11.9 0.0 0.39 10.9 0.0 1.5 1 0 0 1 1 1 0 F/Y rich C-terminus HAP PF03866.13 gi|119719579|ref|YP_920074.1| - 4.4 7.3 8.9 0.6 10.1 0.5 2.3 2 0 0 2 2 2 0 Hydrophobic abundant protein (HAP) TMEM101 PF15111.6 gi|119719585|ref|YP_920080.1| - 0.028 14.0 0.4 0.029 13.9 0.4 1.1 1 0 0 1 1 1 0 TMEM101 protein family DUF1689 PF07954.11 gi|119719585|ref|YP_920080.1| - 0.039 14.4 0.2 0.042 14.3 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1689) MMR_HSR1_Xtn PF16897.5 gi|119719588|ref|YP_920083.1| - 8.4e-18 64.3 0.0 1.5e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|119719588|ref|YP_920083.1| - 4.2e-16 58.7 0.1 1.1e-15 57.5 0.0 1.8 2 0 0 2 2 2 1 TGS domain PduV-EutP PF10662.9 gi|119719588|ref|YP_920083.1| - 3.3e-07 30.2 0.0 0.0057 16.4 0.0 2.6 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|119719588|ref|YP_920083.1| - 1.1e-05 25.5 0.0 5.5e-05 23.2 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|119719588|ref|YP_920083.1| - 4.4e-05 23.5 0.0 0.11 12.4 0.0 3.3 3 0 0 3 3 3 2 RsgA GTPase YchF-GTPase_C PF06071.13 gi|119719588|ref|YP_920083.1| - 0.00015 21.9 0.0 0.11 12.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|119719588|ref|YP_920083.1| - 0.00043 19.9 0.0 0.086 12.4 0.0 2.9 2 1 0 3 3 3 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|119719588|ref|YP_920083.1| - 0.0025 17.3 0.0 0.0053 16.2 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ABC_tran PF00005.27 gi|119719588|ref|YP_920083.1| - 0.0032 18.0 0.0 0.0077 16.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter cobW PF02492.19 gi|119719588|ref|YP_920083.1| - 0.0076 15.9 0.1 0.33 10.5 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|119719588|ref|YP_920083.1| - 0.012 15.1 0.0 1 8.9 0.1 3.0 2 1 0 2 2 2 0 Ferrous iron transport protein B TsaE PF02367.17 gi|119719588|ref|YP_920083.1| - 0.065 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_21 PF13304.6 gi|119719588|ref|YP_920083.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|119719589|ref|YP_920084.1| - 4.3e-102 337.8 0.0 7.6e-50 168.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|119719589|ref|YP_920084.1| - 1.6e-39 133.4 2.0 3.6e-19 68.3 0.3 3.0 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|119719589|ref|YP_920084.1| - 1.5e-36 124.5 1.8 2e-35 120.8 3.0 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|119719589|ref|YP_920084.1| - 2.3e-16 59.3 3.2 3.1e-16 58.9 1.4 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|119719589|ref|YP_920084.1| - 1.4e-15 58.1 0.2 3.5e-06 27.5 0.0 4.3 2 1 1 4 4 4 2 AAA ATPase domain RuvB_N PF05496.12 gi|119719589|ref|YP_920084.1| - 1.9e-15 56.9 0.0 1.7e-07 31.1 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|119719589|ref|YP_920084.1| - 2.9e-14 53.5 0.0 9.3e-07 29.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|119719589|ref|YP_920084.1| - 1.3e-11 44.7 0.8 0.00026 21.0 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Vps4_C PF09336.10 gi|119719589|ref|YP_920084.1| - 2.8e-11 43.3 0.9 3.6e-06 26.9 0.0 2.8 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_33 PF13671.6 gi|119719589|ref|YP_920084.1| - 7.1e-11 42.5 0.0 1.5e-05 25.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|119719589|ref|YP_920084.1| - 2.3e-10 40.9 1.4 0.019 15.2 0.1 4.2 2 2 2 4 4 4 2 AAA domain TIP49 PF06068.13 gi|119719589|ref|YP_920084.1| - 2.7e-10 40.0 0.5 0.00074 18.8 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|119719589|ref|YP_920084.1| - 5.8e-09 36.1 0.0 0.0016 18.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|119719589|ref|YP_920084.1| - 1.7e-07 31.8 0.0 0.036 14.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|119719589|ref|YP_920084.1| - 2.6e-07 30.5 0.0 0.021 14.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|119719589|ref|YP_920084.1| - 3.8e-07 30.5 0.0 0.029 14.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|119719589|ref|YP_920084.1| - 6.3e-07 29.0 0.3 0.032 13.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|119719589|ref|YP_920084.1| - 1.2e-06 28.8 0.0 0.03 14.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|119719589|ref|YP_920084.1| - 2.2e-06 27.5 0.2 0.25 11.0 0.1 3.8 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|119719589|ref|YP_920084.1| - 4.3e-06 26.6 0.2 0.07 12.8 0.0 2.7 2 1 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|119719589|ref|YP_920084.1| - 7.3e-06 26.1 0.1 0.036 14.0 0.0 3.2 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|119719589|ref|YP_920084.1| - 8.3e-06 25.4 0.0 0.13 11.8 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|119719589|ref|YP_920084.1| - 1.7e-05 24.1 0.1 0.069 12.2 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.18 gi|119719589|ref|YP_920084.1| - 3.7e-05 23.7 0.0 0.091 12.6 0.0 3.5 4 0 0 4 4 4 1 Bacterial dnaA protein ATPase PF06745.13 gi|119719589|ref|YP_920084.1| - 4.3e-05 23.0 0.5 0.26 10.6 0.0 3.2 2 1 0 3 3 3 2 KaiC DUF815 PF05673.13 gi|119719589|ref|YP_920084.1| - 5e-05 22.6 0.0 0.12 11.5 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF815) TsaE PF02367.17 gi|119719589|ref|YP_920084.1| - 5.2e-05 23.3 0.0 0.54 10.3 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|119719589|ref|YP_920084.1| - 0.00011 21.7 0.8 0.43 10.0 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.12 gi|119719589|ref|YP_920084.1| - 0.00017 21.5 0.7 1.4 8.8 0.0 3.8 4 0 0 4 4 4 1 NACHT domain AAA_25 PF13481.6 gi|119719589|ref|YP_920084.1| - 0.00026 20.6 5.9 0.73 9.4 0.3 4.3 3 2 0 3 3 3 1 AAA domain AAA_3 PF07726.11 gi|119719589|ref|YP_920084.1| - 0.00026 20.9 0.0 0.77 9.6 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|119719589|ref|YP_920084.1| - 0.00028 20.7 0.0 0.32 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|119719589|ref|YP_920084.1| - 0.00036 19.9 0.0 0.49 9.7 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 gi|119719589|ref|YP_920084.1| - 0.00048 20.7 0.0 1.5 9.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter UFD1 PF03152.14 gi|119719589|ref|YP_920084.1| - 0.00048 19.6 0.0 0.0057 16.1 0.0 2.2 2 0 0 2 2 2 1 Ubiquitin fusion degradation protein UFD1 DUF2075 PF09848.9 gi|119719589|ref|YP_920084.1| - 0.00087 18.6 0.0 1.1 8.5 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|119719589|ref|YP_920084.1| - 0.0013 18.0 0.0 2 7.5 0.0 2.7 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.6 gi|119719589|ref|YP_920084.1| - 0.002 17.9 0.1 2.1 8.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|119719589|ref|YP_920084.1| - 0.0053 17.2 0.2 4.7 7.6 0.0 3.4 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|119719589|ref|YP_920084.1| - 0.0094 16.3 1.3 4.3 7.7 0.0 3.0 2 1 1 3 3 3 0 AAA domain AFG1_ATPase PF03969.16 gi|119719589|ref|YP_920084.1| - 0.017 14.0 0.1 11 4.7 0.0 3.2 4 0 0 4 4 3 0 AFG1-like ATPase DUF1905 PF08922.11 gi|119719589|ref|YP_920084.1| - 0.023 14.7 1.1 7.6 6.7 0.1 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF1905) IPT PF01745.16 gi|119719589|ref|YP_920084.1| - 0.024 14.0 0.7 1.8 7.9 0.0 2.6 3 0 0 3 3 2 0 Isopentenyl transferase Sigma54_activ_2 PF14532.6 gi|119719589|ref|YP_920084.1| - 0.028 14.5 0.0 11 6.2 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Cytidylate_kin PF02224.18 gi|119719589|ref|YP_920084.1| - 0.059 13.1 0.1 17 5.1 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase SKI PF01202.22 gi|119719589|ref|YP_920084.1| - 0.1 12.7 0.1 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|119719589|ref|YP_920084.1| - 0.1 12.3 0.0 15 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Zot PF05707.12 gi|119719589|ref|YP_920084.1| - 0.12 12.1 0.2 3.7 7.1 0.0 3.1 2 2 0 3 3 3 0 Zonular occludens toxin (Zot) PduV-EutP PF10662.9 gi|119719589|ref|YP_920084.1| - 0.12 12.1 0.0 13 5.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Molydop_binding PF01568.21 gi|119719589|ref|YP_920084.1| - 0.22 11.5 0.4 0.83 9.7 0.1 2.1 1 1 1 2 2 1 0 Molydopterin dinucleotide binding domain NTPase_1 PF03266.15 gi|119719589|ref|YP_920084.1| - 0.28 11.1 7.9 10 6.0 0.0 4.9 4 2 0 5 5 5 0 NTPase B5 PF03484.15 gi|119719589|ref|YP_920084.1| - 1.3 9.4 3.7 83 3.6 0.0 3.7 2 1 0 2 2 2 0 tRNA synthetase B5 domain Peptidase_M24 PF00557.24 gi|119719590|ref|YP_920085.1| - 3.1e-33 115.2 0.0 3.8e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Translin PF01997.16 gi|119719591|ref|YP_920086.1| - 1.7e-12 47.8 0.0 1.4e-10 41.5 0.0 2.2 1 1 0 1 1 1 1 Translin family DUF3102 PF11300.8 gi|119719591|ref|YP_920086.1| - 0.071 13.3 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3102) FliS PF02561.14 gi|119719591|ref|YP_920086.1| - 0.11 12.8 0.5 0.33 11.3 0.2 1.9 2 0 0 2 2 2 0 Flagellar protein FliS YfdX PF10938.8 gi|119719591|ref|YP_920086.1| - 0.11 12.4 0.0 2.2 8.2 0.0 2.3 2 0 0 2 2 2 0 YfdX protein Endonuclease_5 PF04493.14 gi|119719592|ref|YP_920087.1| - 1.8e-62 210.5 0.0 2.2e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|119719592|ref|YP_920087.1| - 1.6e-05 24.4 0.1 3.5e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF99 UvrC_HhH_N PF08459.11 gi|119719592|ref|YP_920087.1| - 0.087 12.7 0.0 0.29 11.0 0.0 1.7 1 1 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal Adenosine_kin PF04008.14 gi|119719593|ref|YP_920088.1| - 1.6e-74 248.8 0.4 1.9e-74 248.6 0.4 1.0 1 0 0 1 1 1 1 Adenosine specific kinase PTH2 PF01981.16 gi|119719594|ref|YP_920089.1| - 1.4e-42 144.6 0.0 1.6e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 SpoU_sub_bind PF08032.12 gi|119719594|ref|YP_920089.1| - 0.083 13.2 0.3 0.23 11.8 0.4 1.8 2 1 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding TruD PF01142.18 gi|119719595|ref|YP_920090.1| - 3.8e-127 424.5 0.0 4.4e-127 424.4 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Helicase_RecD PF05127.14 gi|119719596|ref|YP_920091.1| - 1.6e-56 191.0 0.0 3.8e-56 189.7 0.0 1.7 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|119719596|ref|YP_920091.1| - 6.5e-42 143.5 0.0 2.2e-27 95.9 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|119719596|ref|YP_920091.1| - 1.2e-29 102.1 0.3 1.4e-28 98.6 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|119719596|ref|YP_920091.1| - 2.2e-05 24.3 0.6 4.2e-05 23.4 0.6 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_30 PF13604.6 gi|119719596|ref|YP_920091.1| - 0.002 17.9 0.0 0.013 15.2 0.0 2.1 1 1 1 2 2 2 1 AAA domain Acetyltransf_1 PF00583.25 gi|119719596|ref|YP_920091.1| - 0.0076 16.5 0.0 0.021 15.0 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Fer4_9 PF13187.6 gi|119719597|ref|YP_920092.1| - 0.00024 21.2 1.8 0.00039 20.5 1.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119719597|ref|YP_920092.1| - 0.00047 19.9 7.1 0.13 12.1 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119719597|ref|YP_920092.1| - 0.0079 16.8 3.0 0.016 15.8 3.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719597|ref|YP_920092.1| - 0.016 15.3 2.5 0.026 14.6 2.5 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119719597|ref|YP_920092.1| - 0.15 13.0 8.6 5.1 8.3 2.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119719597|ref|YP_920092.1| - 0.31 12.0 3.7 5.8 7.9 0.1 2.3 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119719597|ref|YP_920092.1| - 0.81 9.9 4.0 2.1 8.5 4.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719597|ref|YP_920092.1| - 1.4 9.1 7.1 2.9 8.1 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF357 PF04010.13 gi|119719598|ref|YP_920093.1| - 9.6e-19 67.2 0.0 4e-18 65.3 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|119719598|ref|YP_920093.1| - 4.2e-14 53.0 0.0 7.1e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|119719598|ref|YP_920093.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.5 1 1 0 1 1 1 0 FAD synthetase TP_methylase PF00590.20 gi|119719599|ref|YP_920094.1| - 2.6e-27 96.1 0.4 3.2e-27 95.9 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TFIIB PF00382.19 gi|119719600|ref|YP_920095.1| - 1.5e-34 117.9 1.9 7.5e-17 61.1 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|119719600|ref|YP_920095.1| - 3.1e-17 61.8 0.2 5.5e-17 61.0 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|119719600|ref|YP_920095.1| - 0.00091 18.9 0.1 0.0016 18.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 Sigma70_r4 PF04545.16 gi|119719600|ref|YP_920095.1| - 0.0014 18.1 2.8 0.0023 17.4 0.1 2.8 4 0 0 4 4 4 1 Sigma-70, region 4 zf-ribbon_3 PF13248.6 gi|119719600|ref|YP_920095.1| - 0.0016 17.8 4.4 0.018 14.4 4.4 2.2 1 1 0 1 1 1 1 zinc-ribbon domain HTH_AsnC-type PF13404.6 gi|119719600|ref|YP_920095.1| - 0.0021 17.8 2.7 0.0036 17.1 0.1 2.7 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|119719600|ref|YP_920095.1| - 0.0027 17.1 0.5 0.054 12.9 0.1 3.1 3 1 1 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 Cyclin_C PF02984.19 gi|119719600|ref|YP_920095.1| - 0.003 17.6 0.0 0.47 10.6 0.0 2.3 2 0 0 2 2 2 1 Cyclin, C-terminal domain DUF2752 PF10825.8 gi|119719600|ref|YP_920095.1| - 0.0032 17.5 0.6 0.0076 16.3 0.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2752) Auto_anti-p27 PF06677.12 gi|119719600|ref|YP_920095.1| - 0.008 16.3 0.6 0.016 15.4 0.6 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|119719600|ref|YP_920095.1| - 0.014 15.3 0.5 0.031 14.2 0.5 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|119719600|ref|YP_920095.1| - 0.015 15.6 0.2 0.032 14.6 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS91 PF14319.6 gi|119719600|ref|YP_920095.1| - 0.021 14.9 0.2 0.044 13.8 0.2 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain Cyclin_N PF00134.23 gi|119719600|ref|YP_920095.1| - 0.025 14.3 0.2 1.6 8.5 0.2 2.2 2 0 0 2 2 2 0 Cyclin, N-terminal domain A2L_zn_ribbon PF08792.10 gi|119719600|ref|YP_920095.1| - 0.035 13.8 0.9 0.082 12.7 0.9 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.7 gi|119719600|ref|YP_920095.1| - 0.041 13.9 0.2 0.084 12.9 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon Sigma70_r4_2 PF08281.12 gi|119719600|ref|YP_920095.1| - 0.056 13.1 0.5 0.17 11.6 0.5 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 zinc_ribbon_4 PF13717.6 gi|119719600|ref|YP_920095.1| - 0.058 13.3 1.0 0.25 11.3 1.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719600|ref|YP_920095.1| - 0.072 12.8 0.9 4.8 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119719600|ref|YP_920095.1| - 0.073 13.0 1.5 6.2 6.8 0.2 2.1 1 1 0 2 2 2 0 Putative transposase DNA-binding domain RB_B PF01857.20 gi|119719600|ref|YP_920095.1| - 0.11 12.6 0.0 0.35 10.9 0.0 1.8 2 0 0 2 2 1 0 Retinoblastoma-associated protein B domain GerE PF00196.19 gi|119719600|ref|YP_920095.1| - 0.11 12.1 0.2 0.28 10.7 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF2318 PF10080.9 gi|119719600|ref|YP_920095.1| - 0.11 12.6 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Prim_Zn_Ribbon PF08273.12 gi|119719600|ref|YP_920095.1| - 0.12 12.7 1.3 0.28 11.5 1.3 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-NADH-PPase PF09297.11 gi|119719600|ref|YP_920095.1| - 0.3 10.8 1.1 1.8 8.3 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Trm112p PF03966.16 gi|119719600|ref|YP_920095.1| - 0.57 10.8 2.7 13 6.5 0.5 2.7 1 1 1 2 2 2 0 Trm112p-like protein Zn-ribbon_8 PF09723.10 gi|119719600|ref|YP_920095.1| - 0.77 9.9 2.6 2.9 8.1 0.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|119719600|ref|YP_920095.1| - 3.1 7.6 4.8 19 5.1 4.8 2.1 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_RNApol_7kD PF03604.13 gi|119719600|ref|YP_920095.1| - 9 6.1 8.1 5.6 6.7 0.3 2.7 2 1 0 3 3 2 0 DNA directed RNA polymerase, 7 kDa subunit PIN_9 PF18477.1 gi|119719601|ref|YP_920096.1| - 2.8e-18 66.3 0.6 3.8e-18 65.9 0.6 1.2 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|119719601|ref|YP_920096.1| - 4.4e-06 27.0 0.4 7.9e-05 23.0 0.4 2.0 1 1 0 1 1 1 1 PIN domain Fcf1 PF04900.12 gi|119719601|ref|YP_920096.1| - 0.0017 18.7 0.0 0.0027 18.0 0.0 1.3 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|119719601|ref|YP_920096.1| - 0.0022 18.5 0.5 0.0079 16.7 0.5 1.8 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|119719601|ref|YP_920096.1| - 0.078 12.7 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) cobW PF02492.19 gi|119719602|ref|YP_920097.1| - 0.00036 20.2 0.0 0.0019 17.8 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Thymidylate_kin PF02223.17 gi|119719602|ref|YP_920097.1| - 0.01 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase SKI PF01202.22 gi|119719602|ref|YP_920097.1| - 0.023 14.8 0.1 3.3 7.8 0.0 3.1 3 0 0 3 3 3 0 Shikimate kinase Zeta_toxin PF06414.12 gi|119719602|ref|YP_920097.1| - 0.033 13.5 0.0 0.065 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ParA PF10609.9 gi|119719602|ref|YP_920097.1| - 0.039 13.4 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase PRK PF00485.18 gi|119719602|ref|YP_920097.1| - 0.042 13.6 0.0 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family CbiA PF01656.23 gi|119719602|ref|YP_920097.1| - 0.051 13.6 0.0 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Cpn60_TCP1 PF00118.24 gi|119719603|ref|YP_920098.1| - 1.2e-186 621.2 13.6 1.3e-186 621.0 13.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family AAA_18 PF13238.6 gi|119719604|ref|YP_920099.1| - 4.5e-16 59.6 0.0 9.5e-16 58.5 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|119719604|ref|YP_920099.1| - 1.6e-14 54.5 0.0 2.9e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119719604|ref|YP_920099.1| - 1.5e-06 28.4 0.0 2.7e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|119719604|ref|YP_920099.1| - 0.021 15.0 0.1 0.038 14.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|119719604|ref|YP_920099.1| - 0.039 13.3 0.2 0.099 12.0 0.1 1.7 2 0 0 2 2 2 0 KaiC ADK PF00406.22 gi|119719604|ref|YP_920099.1| - 0.07 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Adenylate kinase KTI12 PF08433.10 gi|119719604|ref|YP_920099.1| - 0.091 12.2 0.4 4.2 6.7 0.1 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|119719604|ref|YP_920099.1| - 0.1 11.9 0.4 0.18 11.1 0.2 1.9 2 1 0 2 2 2 0 Zeta toxin DUF2075 PF09848.9 gi|119719604|ref|YP_920099.1| - 0.11 11.8 0.5 0.15 11.2 0.5 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|119719604|ref|YP_920099.1| - 0.11 12.6 0.0 0.38 10.9 0.0 2.0 2 1 0 2 2 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|119719604|ref|YP_920099.1| - 0.13 11.3 0.2 0.25 10.4 0.2 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|119719604|ref|YP_920099.1| - 0.18 12.2 0.3 0.3 11.5 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|119719604|ref|YP_920099.1| - 0.29 11.5 3.9 2.2 8.6 0.1 2.2 1 1 0 2 2 2 0 AAA ATPase domain RNA_binding PF01877.17 gi|119719605|ref|YP_920100.1| - 3.3e-16 59.6 0.0 3.9e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 RNA binding Lactamase_B_2 PF12706.7 gi|119719606|ref|YP_920101.1| - 7.8e-15 54.9 0.0 5.8e-07 29.2 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119719606|ref|YP_920101.1| - 7.5e-07 29.3 0.0 1.2e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|119719606|ref|YP_920101.1| - 0.0018 17.9 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DUF373 PF04123.13 gi|119719609|ref|YP_920104.1| - 1.2e-92 311.0 7.5 1.3e-92 310.8 7.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) RFX5_DNA_bdg PF14621.6 gi|119719609|ref|YP_920104.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 RFX5 DNA-binding domain DUF4043 PF13252.6 gi|119719609|ref|YP_920104.1| - 0.12 11.5 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4043) UPF0020 PF01170.18 gi|119719610|ref|YP_920105.1| - 1.9e-15 57.1 0.0 1.3e-14 54.3 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|119719610|ref|YP_920105.1| - 3e-06 27.0 0.0 5.3e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|119719610|ref|YP_920105.1| - 6.9e-06 25.9 0.0 1.4e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|119719610|ref|YP_920105.1| - 1.5e-05 24.7 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|119719610|ref|YP_920105.1| - 8.7e-05 23.2 0.0 0.0002 22.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119719610|ref|YP_920105.1| - 0.00024 21.7 0.0 0.00077 20.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|119719610|ref|YP_920105.1| - 0.021 14.5 0.0 0.068 12.9 0.0 1.7 2 0 0 2 2 2 0 DNA methylase PRC PF05239.16 gi|119719611|ref|YP_920106.1| - 2e-06 27.8 1.3 4.5e-06 26.6 1.3 1.5 1 0 0 1 1 1 1 PRC-barrel domain CdvA PF18822.1 gi|119719611|ref|YP_920106.1| - 3.4e-05 23.7 3.0 5.7e-05 22.9 3.0 1.4 1 0 0 1 1 1 1 CdvA-like coiled-coil domain GvpG PF05120.12 gi|119719611|ref|YP_920106.1| - 0.012 15.6 1.5 0.05 13.6 0.2 2.1 1 1 1 2 2 2 0 Gas vesicle protein G E2F_TDP PF02319.20 gi|119719611|ref|YP_920106.1| - 0.023 14.8 0.2 0.065 13.3 0.2 1.9 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PolyA_pol_RNAbd PF12627.7 gi|119719611|ref|YP_920106.1| - 0.029 14.1 0.0 0.1 12.4 0.0 2.0 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A OAM_alpha PF16552.5 gi|119719611|ref|YP_920106.1| - 0.054 13.4 0.1 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 D-ornithine 4,5-aminomutase alpha-subunit RsbRD_N PF14361.6 gi|119719611|ref|YP_920106.1| - 0.12 13.1 0.5 0.31 11.8 0.4 1.8 1 1 1 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain DUF1512 PF07431.12 gi|119719612|ref|YP_920107.1| - 5.8e-123 410.4 4.2 6.5e-123 410.2 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Inhibitor_I42 PF09394.10 gi|119719612|ref|YP_920107.1| - 0.14 12.5 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 Chagasin family peptidase inhibitor I42 Radical_SAM PF04055.21 gi|119719613|ref|YP_920108.1| - 2.1e-19 70.5 0.5 1.7e-18 67.6 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119719613|ref|YP_920108.1| - 1.6e-06 28.3 0.2 9e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119719613|ref|YP_920108.1| - 4.4e-06 27.0 0.2 2.3e-05 24.7 0.0 2.2 2 1 1 3 3 3 1 4Fe-4S single cluster domain IKKbetaNEMObind PF12179.8 gi|119719615|ref|YP_920110.1| - 0.14 12.2 0.3 0.24 11.4 0.3 1.4 1 0 0 1 1 1 0 I-kappa-kinase-beta NEMO binding domain TGT_C2 PF14810.6 gi|119719616|ref|YP_920111.1| - 1.9e-11 43.9 0.1 3.6e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|119719616|ref|YP_920111.1| - 2.1e-08 34.0 0.2 3e-08 33.5 0.2 1.2 1 0 0 1 1 1 1 PUA domain TruB-C_2 PF09157.11 gi|119719616|ref|YP_920111.1| - 0.012 15.6 0.0 0.18 11.9 0.0 2.3 1 1 1 2 2 2 0 Pseudouridine synthase II TruB, C-terminal HTH_3 PF01381.22 gi|119719617|ref|YP_920112.1| - 6.3e-13 48.6 0.4 9.7e-13 48.0 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|119719617|ref|YP_920112.1| - 7.9e-09 35.7 0.1 1.4e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|119719617|ref|YP_920112.1| - 5.2e-07 29.6 0.2 7.9e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|119719617|ref|YP_920112.1| - 0.00085 19.1 0.1 0.0019 18.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GTP-bdg_N PF13167.6 gi|119719618|ref|YP_920113.1| - 3.1e-26 91.8 0.0 1.2e-25 90.0 0.0 2.0 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|119719618|ref|YP_920113.1| - 6.2e-14 52.1 0.0 1.6e-13 50.7 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|119719618|ref|YP_920113.1| - 1.1e-11 45.1 2.8 2.6e-11 43.9 2.8 1.7 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|119719618|ref|YP_920113.1| - 2.6e-07 30.3 0.0 6.2e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|119719618|ref|YP_920113.1| - 2.5e-06 27.5 0.0 0.016 15.1 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Ras PF00071.22 gi|119719618|ref|YP_920113.1| - 0.00016 21.3 0.0 0.00055 19.6 0.0 1.9 1 1 0 1 1 1 1 Ras family ABC_tran PF00005.27 gi|119719618|ref|YP_920113.1| - 0.00027 21.5 0.5 0.0011 19.5 0.1 2.1 2 0 0 2 2 2 1 ABC transporter GTP_EFTU PF00009.27 gi|119719618|ref|YP_920113.1| - 0.00042 19.9 0.1 0.071 12.7 0.0 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|119719618|ref|YP_920113.1| - 0.0034 17.4 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|119719618|ref|YP_920113.1| - 0.0035 17.1 0.1 4.3 7.1 0.0 2.6 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|119719618|ref|YP_920113.1| - 0.0061 16.2 6.3 0.13 11.8 0.8 3.2 2 1 1 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|119719618|ref|YP_920113.1| - 0.049 14.0 1.5 0.15 12.4 0.6 2.4 2 1 0 2 2 1 0 AAA ATPase domain TsaE PF02367.17 gi|119719618|ref|YP_920113.1| - 0.074 13.1 0.4 0.18 11.8 0.0 1.8 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|119719618|ref|YP_920113.1| - 0.092 13.3 0.1 0.4 11.2 0.1 2.1 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|119719618|ref|YP_920113.1| - 0.11 12.9 0.8 0.11 12.9 0.8 2.3 1 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|119719618|ref|YP_920113.1| - 0.12 12.2 0.0 0.34 10.7 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arf PF00025.21 gi|119719618|ref|YP_920113.1| - 0.2 11.1 4.2 0.91 8.9 0.1 3.1 2 1 0 3 3 3 0 ADP-ribosylation factor family DUF3618 PF12277.8 gi|119719618|ref|YP_920113.1| - 0.27 11.5 4.6 0.34 11.2 1.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) AAA_22 PF13401.6 gi|119719618|ref|YP_920113.1| - 0.3 11.4 1.4 6.8 7.0 1.4 3.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119719618|ref|YP_920113.1| - 0.3 10.8 3.2 2 8.1 0.1 2.8 3 0 0 3 3 3 0 AAA domain Trm56 PF01994.16 gi|119719619|ref|YP_920114.1| - 1e-49 167.4 0.0 1.3e-49 167.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.17 gi|119719620|ref|YP_920115.1| - 1.7e-39 133.9 1.1 2.3e-39 133.5 1.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|119719620|ref|YP_920115.1| - 6.1e-12 44.9 3.6 1e-11 44.2 3.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|119719620|ref|YP_920115.1| - 0.00035 20.6 0.3 0.58 10.3 0.0 2.4 2 0 0 2 2 2 2 Zinc ribbon domain zf_UBZ PF18439.1 gi|119719620|ref|YP_920115.1| - 0.0004 19.9 1.2 0.13 11.9 0.1 2.5 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger HTH_9 PF08221.11 gi|119719620|ref|YP_920115.1| - 0.00055 20.0 0.0 0.0028 17.7 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HypA PF01155.19 gi|119719620|ref|YP_920115.1| - 0.00082 19.4 0.1 0.0013 18.7 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|119719620|ref|YP_920115.1| - 0.0021 18.0 0.8 0.0036 17.3 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|119719620|ref|YP_920115.1| - 0.0032 17.3 2.3 0.029 14.3 2.3 2.3 1 1 0 1 1 1 1 SprT-like zinc ribbon domain Rrf2 PF02082.20 gi|119719620|ref|YP_920115.1| - 0.0039 17.5 0.0 0.0097 16.2 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator Lar_restr_allev PF14354.6 gi|119719620|ref|YP_920115.1| - 0.0041 17.5 0.4 0.0071 16.7 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|119719620|ref|YP_920115.1| - 0.0054 16.6 1.9 0.017 15.0 1.9 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719620|ref|YP_920115.1| - 0.0058 16.3 2.3 0.61 9.9 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|119719620|ref|YP_920115.1| - 0.0082 15.8 1.8 1.4 8.7 0.0 2.3 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119719620|ref|YP_920115.1| - 0.0088 15.4 0.7 0.77 9.3 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|119719620|ref|YP_920115.1| - 0.02 14.8 0.8 1 9.3 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-HIT PF04438.16 gi|119719620|ref|YP_920115.1| - 0.026 14.4 4.4 0.23 11.4 1.2 2.2 2 0 0 2 2 2 0 HIT zinc finger Sld5 PF05916.11 gi|119719620|ref|YP_920115.1| - 0.028 14.9 0.4 0.6 10.6 0.1 2.2 2 0 0 2 2 2 0 GINS complex protein HTH_5 PF01022.20 gi|119719620|ref|YP_920115.1| - 0.033 14.1 0.1 0.097 12.6 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FYVE PF01363.21 gi|119719620|ref|YP_920115.1| - 0.038 14.1 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 FYVE zinc finger ADK_lid PF05191.14 gi|119719620|ref|YP_920115.1| - 0.038 14.0 2.7 0.072 13.1 2.7 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid IBR PF01485.21 gi|119719620|ref|YP_920115.1| - 0.048 13.9 0.3 0.081 13.2 0.3 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|119719620|ref|YP_920115.1| - 0.05 13.5 1.9 4.7 7.2 0.1 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|119719620|ref|YP_920115.1| - 0.051 13.4 0.2 0.051 13.4 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1595 PF12760.7 gi|119719620|ref|YP_920115.1| - 0.056 13.4 0.7 0.11 12.5 0.7 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|119719620|ref|YP_920115.1| - 0.075 12.8 0.3 0.13 12.0 0.3 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 MarR_2 PF12802.7 gi|119719620|ref|YP_920115.1| - 0.078 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 MarR family Sigma70_r3 PF04539.16 gi|119719620|ref|YP_920115.1| - 0.09 12.9 0.1 0.21 11.7 0.1 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 Ribosomal_S16 PF00886.19 gi|119719620|ref|YP_920115.1| - 0.094 12.8 0.0 0.58 10.3 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein S16 zinc_ribbon_10 PF10058.9 gi|119719620|ref|YP_920115.1| - 0.099 12.4 3.5 2.4 8.0 3.6 2.3 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-UDP PF14569.6 gi|119719620|ref|YP_920115.1| - 0.14 12.3 1.7 0.69 10.1 0.2 2.2 1 1 1 2 2 2 0 Zinc-binding RING-finger C1_2 PF03107.16 gi|119719620|ref|YP_920115.1| - 0.21 11.9 2.3 8.5 6.8 0.2 1.9 1 1 0 1 1 1 0 C1 domain zf-C2H2_4 PF13894.6 gi|119719620|ref|YP_920115.1| - 0.22 12.5 1.2 16 6.7 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Nudix_N_2 PF14803.6 gi|119719620|ref|YP_920115.1| - 0.3 11.0 2.5 3 7.8 0.2 2.3 1 1 1 2 2 2 0 Nudix N-terminal CpXC PF14353.6 gi|119719620|ref|YP_920115.1| - 0.36 10.9 3.9 3.2 7.8 0.1 2.9 1 1 1 3 3 3 0 CpXC protein zf-C2H2 PF00096.26 gi|119719620|ref|YP_920115.1| - 0.45 11.1 4.3 11 6.6 0.9 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type RNA_POL_M_15KD PF02150.16 gi|119719620|ref|YP_920115.1| - 0.47 10.4 2.9 1.1 9.2 2.9 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-Mss51 PF13824.6 gi|119719620|ref|YP_920115.1| - 0.54 10.4 2.9 3.4 7.8 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|119719620|ref|YP_920115.1| - 0.6 10.2 6.2 3.1 7.9 0.4 2.7 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain TFIIS_C PF01096.18 gi|119719620|ref|YP_920115.1| - 1.2 9.1 6.3 4.7 7.1 0.5 2.5 2 1 1 3 3 2 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.12 gi|119719620|ref|YP_920115.1| - 2 8.1 6.5 0.95 9.1 1.2 2.2 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Sigma70_r4_2 PF08281.12 gi|119719621|ref|YP_920116.1| - 1.1e-08 34.7 0.5 2.8e-08 33.3 0.2 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|119719621|ref|YP_920116.1| - 9e-07 28.5 0.1 2.7e-06 27.0 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|119719621|ref|YP_920116.1| - 6.5e-06 26.2 0.3 2.1e-05 24.6 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|119719621|ref|YP_920116.1| - 1.6e-05 24.5 0.1 5.8e-05 22.8 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|119719621|ref|YP_920116.1| - 2.4e-05 24.3 0.3 7.3e-05 22.7 0.1 1.8 2 0 0 2 2 2 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|119719621|ref|YP_920116.1| - 5.6e-05 22.6 0.1 0.00014 21.3 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|119719621|ref|YP_920116.1| - 8e-05 22.5 0.2 0.00036 20.4 0.1 2.1 2 0 0 2 2 2 1 HTH domain GerE PF00196.19 gi|119719621|ref|YP_920116.1| - 0.00015 21.2 0.1 0.00044 19.7 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family TrmB PF01978.19 gi|119719621|ref|YP_920116.1| - 0.00049 19.9 2.6 0.3 11.0 0.1 3.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|119719621|ref|YP_920116.1| - 0.00062 19.7 0.0 0.0018 18.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_8 PF02954.19 gi|119719621|ref|YP_920116.1| - 0.001 18.8 0.1 0.013 15.3 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family DUF2089 PF09862.9 gi|119719621|ref|YP_920116.1| - 0.0013 18.7 1.1 0.04 13.9 0.2 2.4 1 1 0 2 2 2 1 Protein of unknown function (DUF2089) HTH_22 PF13309.6 gi|119719621|ref|YP_920116.1| - 0.0021 18.1 0.5 0.015 15.3 0.1 2.4 2 0 0 2 2 2 1 HTH domain HTH_40 PF14493.6 gi|119719621|ref|YP_920116.1| - 0.0043 17.5 0.1 0.013 15.9 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|119719621|ref|YP_920116.1| - 0.0051 16.6 0.1 0.049 13.4 0.0 2.2 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain UPF0122 PF04297.14 gi|119719621|ref|YP_920116.1| - 0.0064 16.7 0.3 0.018 15.2 0.0 1.8 2 0 0 2 2 1 1 Putative helix-turn-helix protein, YlxM / p13 like DUF1804 PF08822.11 gi|119719621|ref|YP_920116.1| - 0.0067 16.4 0.0 0.74 9.8 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1804) HTH_6 PF01418.17 gi|119719621|ref|YP_920116.1| - 0.013 15.5 1.9 0.06 13.3 0.1 2.7 3 1 0 3 3 2 0 Helix-turn-helix domain, rpiR family HTH_Crp_2 PF13545.6 gi|119719621|ref|YP_920116.1| - 0.018 15.0 0.1 3 7.9 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|119719621|ref|YP_920116.1| - 0.023 14.9 0.1 0.066 13.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|119719621|ref|YP_920116.1| - 0.025 14.6 0.6 0.09 12.9 0.2 2.2 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_36 PF13730.6 gi|119719621|ref|YP_920116.1| - 0.026 14.5 0.1 0.16 11.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.8 gi|119719621|ref|YP_920116.1| - 0.048 13.5 0.2 0.85 9.5 0.0 2.3 2 0 0 2 2 2 0 Tc3 transposase MutS_III PF05192.18 gi|119719621|ref|YP_920116.1| - 0.048 13.9 0.4 0.1 12.8 0.4 1.5 1 1 0 1 1 1 0 MutS domain III HTH_Tnp_ISL3 PF13542.6 gi|119719621|ref|YP_920116.1| - 0.052 13.0 0.1 0.15 11.5 0.0 1.9 3 0 0 3 3 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1 PF01527.20 gi|119719621|ref|YP_920116.1| - 0.054 13.8 0.1 0.23 11.8 0.1 2.1 1 1 0 1 1 1 0 Transposase Terminase_5 PF06056.12 gi|119719621|ref|YP_920116.1| - 0.061 13.2 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) DUF746 PF05344.11 gi|119719621|ref|YP_920116.1| - 0.063 13.1 0.0 0.91 9.4 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) CENP-F_N PF10481.9 gi|119719621|ref|YP_920116.1| - 0.1 12.2 0.2 12 5.5 0.2 2.1 1 1 0 2 2 2 0 Cenp-F N-terminal domain DDE_Tnp_IS66_C PF13817.6 gi|119719621|ref|YP_920116.1| - 0.16 12.2 1.6 23 5.3 0.0 3.6 4 0 0 4 4 4 0 IS66 C-terminal element HTH_3 PF01381.22 gi|119719621|ref|YP_920116.1| - 0.16 12.0 1.5 3.4 7.8 0.1 2.7 3 0 0 3 3 2 0 Helix-turn-helix Phage_terminase PF10668.9 gi|119719621|ref|YP_920116.1| - 0.17 11.9 0.0 0.42 10.7 0.0 1.6 1 0 0 1 1 1 0 Phage terminase small subunit CbiQ PF02361.16 gi|119719622|ref|YP_920117.1| - 4.1e-26 92.0 12.6 4.1e-26 92.0 12.6 1.5 1 1 0 1 1 1 1 Cobalt transport protein DUF3792 PF12670.7 gi|119719622|ref|YP_920117.1| - 3.9 7.7 15.4 0.13 12.4 9.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) ABC_tran PF00005.27 gi|119719623|ref|YP_920118.1| - 8.5e-31 107.3 0.0 1.8e-30 106.2 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|119719623|ref|YP_920118.1| - 1.2e-09 38.4 0.7 7.5e-06 26.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119719623|ref|YP_920118.1| - 1.1e-06 28.2 0.0 1.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119719623|ref|YP_920118.1| - 0.00052 20.6 0.0 0.00066 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119719623|ref|YP_920118.1| - 0.00053 19.7 0.0 0.00099 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119719623|ref|YP_920118.1| - 0.00083 19.6 0.6 0.0051 17.1 0.3 2.5 2 1 0 2 2 2 1 AAA domain TniB PF05621.11 gi|119719623|ref|YP_920118.1| - 0.0011 18.4 0.2 0.72 9.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial TniB protein AAA_16 PF13191.6 gi|119719623|ref|YP_920118.1| - 0.0022 18.4 0.0 0.0034 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain DLIC PF05783.11 gi|119719623|ref|YP_920118.1| - 0.0039 16.1 0.0 0.0056 15.6 0.0 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|119719623|ref|YP_920118.1| - 0.0052 16.7 2.6 0.068 13.1 0.6 2.1 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.6 gi|119719623|ref|YP_920118.1| - 0.0052 16.5 0.7 0.026 14.3 0.2 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|119719623|ref|YP_920118.1| - 0.0083 16.0 0.2 0.025 14.5 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|119719623|ref|YP_920118.1| - 0.012 15.4 0.6 0.36 10.6 0.2 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.6 gi|119719623|ref|YP_920118.1| - 0.016 14.9 0.0 0.026 14.2 0.0 1.3 2 0 0 2 2 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|119719623|ref|YP_920118.1| - 0.017 14.8 0.1 0.02 14.6 0.1 1.3 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119719623|ref|YP_920118.1| - 0.027 14.4 0.2 0.053 13.4 0.2 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Roc PF08477.13 gi|119719623|ref|YP_920118.1| - 0.031 14.5 0.2 0.07 13.3 0.2 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|119719623|ref|YP_920118.1| - 0.031 14.8 0.0 0.12 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|119719623|ref|YP_920118.1| - 0.05 13.6 0.1 0.094 12.7 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|119719623|ref|YP_920118.1| - 0.052 13.3 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|119719623|ref|YP_920118.1| - 0.079 12.9 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|119719623|ref|YP_920118.1| - 0.085 12.2 0.2 0.29 10.4 0.1 1.8 2 0 0 2 2 2 0 KaiC SRP54 PF00448.22 gi|119719623|ref|YP_920118.1| - 0.11 12.1 0.0 0.3 10.7 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|119719623|ref|YP_920118.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|119719623|ref|YP_920118.1| - 0.12 11.7 0.1 0.2 10.9 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin DUF3584 PF12128.8 gi|119719623|ref|YP_920118.1| - 0.16 9.5 0.1 0.2 9.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MMR_HSR1 PF01926.23 gi|119719623|ref|YP_920118.1| - 0.21 11.7 0.7 0.34 11.0 0.7 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|119719624|ref|YP_920119.1| - 1.9e-26 93.2 0.0 2.6e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119719624|ref|YP_920119.1| - 6.4e-09 36.0 1.2 0.00012 22.0 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119719624|ref|YP_920119.1| - 0.00095 18.7 0.0 0.091 12.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|119719624|ref|YP_920119.1| - 0.004 16.6 0.0 0.0073 15.7 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|119719624|ref|YP_920119.1| - 0.0047 17.3 0.1 0.0072 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|119719624|ref|YP_920119.1| - 0.0069 16.5 0.1 0.015 15.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119719624|ref|YP_920119.1| - 0.0069 16.1 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|119719624|ref|YP_920119.1| - 0.0078 16.2 0.0 0.02 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|119719624|ref|YP_920119.1| - 0.012 15.2 0.0 0.084 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|119719624|ref|YP_920119.1| - 0.013 15.5 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|119719624|ref|YP_920119.1| - 0.021 14.6 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119719624|ref|YP_920119.1| - 0.034 14.6 0.1 0.061 13.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119719624|ref|YP_920119.1| - 0.034 14.6 0.1 0.13 12.6 0.1 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119719624|ref|YP_920119.1| - 0.038 14.3 0.2 0.22 11.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|119719624|ref|YP_920119.1| - 0.079 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|119719624|ref|YP_920119.1| - 0.097 12.4 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|119719624|ref|YP_920119.1| - 0.11 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase SbcCD_C PF13558.6 gi|119719624|ref|YP_920119.1| - 0.12 12.6 0.0 1.6 9.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|119719624|ref|YP_920119.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119719624|ref|YP_920119.1| - 0.15 12.7 0.0 0.29 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|119719624|ref|YP_920119.1| - 0.15 11.4 0.0 10 5.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein NACHT PF05729.12 gi|119719624|ref|YP_920119.1| - 0.15 11.9 0.1 0.37 10.7 0.0 1.7 2 0 0 2 2 2 0 NACHT domain MMR_HSR1_C PF08438.10 gi|119719625|ref|YP_920120.1| - 3.1e-37 127.6 0.0 5.7e-37 126.7 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|119719625|ref|YP_920120.1| - 6.8e-17 61.6 0.0 2.5e-16 59.8 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|119719625|ref|YP_920120.1| - 2.4e-09 37.1 0.0 4.6e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|119719625|ref|YP_920120.1| - 3.1e-05 23.6 0.7 0.003 17.1 0.1 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B DUF460 PF04312.13 gi|119719625|ref|YP_920120.1| - 0.084 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF460) GFO_IDH_MocA PF01408.22 gi|119719627|ref|YP_920122.1| - 1.7e-23 83.7 0.0 7.1e-23 81.7 0.1 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|119719627|ref|YP_920122.1| - 0.00023 21.4 0.1 0.00035 20.8 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain GFO_IDH_MocA_C PF02894.17 gi|119719627|ref|YP_920122.1| - 0.0011 19.0 0.1 0.0039 17.2 0.0 1.9 2 1 1 3 3 3 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|119719627|ref|YP_920122.1| - 0.0011 19.5 0.1 0.0019 18.7 0.1 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|119719627|ref|YP_920122.1| - 0.011 15.8 0.1 0.017 15.2 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Gp_dh_N PF00044.24 gi|119719627|ref|YP_920122.1| - 0.032 14.6 0.0 0.067 13.5 0.0 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|119719628|ref|YP_920123.1| - 1.2e-20 74.1 0.0 1.7e-20 73.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|119719628|ref|YP_920123.1| - 1.3e-08 34.3 0.3 0.00015 20.9 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|119719628|ref|YP_920123.1| - 2.7e-08 33.8 0.8 0.001 18.7 0.1 2.5 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|119719628|ref|YP_920123.1| - 5.2e-08 32.0 1.2 5.3e-07 28.7 0.4 2.7 2 1 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|119719628|ref|YP_920123.1| - 6.6e-08 32.2 0.1 1.1e-06 28.2 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|119719628|ref|YP_920123.1| - 6.8e-08 31.8 0.0 0.0002 20.3 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|119719628|ref|YP_920123.1| - 1.3e-06 28.5 0.0 6.8e-06 26.2 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|119719628|ref|YP_920123.1| - 2.9e-06 26.7 0.3 7.6e-06 25.4 0.3 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|119719628|ref|YP_920123.1| - 3.1e-05 23.3 0.1 7.3e-05 22.1 0.1 1.7 1 1 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|119719628|ref|YP_920123.1| - 4.1e-05 22.8 0.7 0.0002 20.6 0.4 2.1 1 1 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|119719628|ref|YP_920123.1| - 0.00016 22.2 2.1 0.001 19.6 0.1 3.0 2 2 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|119719628|ref|YP_920123.1| - 0.0035 17.3 1.2 0.0085 16.0 0.2 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|119719628|ref|YP_920123.1| - 0.018 14.2 0.1 0.026 13.6 0.1 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|119719628|ref|YP_920123.1| - 0.072 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|119719628|ref|YP_920123.1| - 0.11 12.5 0.1 0.27 11.2 0.1 1.7 1 1 0 1 1 1 0 FAD-NAD(P)-binding XdhC_C PF13478.6 gi|119719628|ref|YP_920123.1| - 0.12 12.9 0.1 0.23 12.0 0.1 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain FAD_oxidored PF12831.7 gi|119719628|ref|YP_920123.1| - 0.14 11.5 0.7 0.21 10.9 0.7 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|119719628|ref|YP_920123.1| - 0.15 12.0 0.6 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sdh5 PF03937.16 gi|119719628|ref|YP_920123.1| - 0.22 11.5 0.6 33 4.5 0.0 2.7 3 0 0 3 3 3 0 Flavinator of succinate dehydrogenase HxlR PF01638.17 gi|119719629|ref|YP_920124.1| - 9.3e-07 28.6 0.1 1.4e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|119719629|ref|YP_920124.1| - 8.7e-05 22.3 0.3 0.00019 21.3 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|119719629|ref|YP_920124.1| - 0.00011 22.0 1.4 0.00022 21.1 0.3 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|119719629|ref|YP_920124.1| - 0.00038 20.3 0.3 0.0012 18.7 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|119719629|ref|YP_920124.1| - 0.00041 19.8 0.3 0.0015 18.0 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|119719629|ref|YP_920124.1| - 0.0007 19.4 1.6 0.0015 18.4 0.2 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|119719629|ref|YP_920124.1| - 0.00077 19.5 1.7 0.0016 18.5 1.5 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|119719629|ref|YP_920124.1| - 0.0015 18.5 0.0 0.0047 16.9 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|119719629|ref|YP_920124.1| - 0.002 18.6 0.1 0.0038 17.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain AphA_like PF14557.6 gi|119719629|ref|YP_920124.1| - 0.007 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator PadR PF03551.14 gi|119719629|ref|YP_920124.1| - 0.007 16.3 0.1 0.015 15.3 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|119719629|ref|YP_920124.1| - 0.0073 16.4 0.2 0.0092 16.1 0.2 1.2 1 0 0 1 1 1 1 Replication-relaxation Rrf2 PF02082.20 gi|119719629|ref|YP_920124.1| - 0.015 15.7 0.6 0.074 13.4 0.2 2.1 1 1 1 2 2 2 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|119719629|ref|YP_920124.1| - 0.02 14.8 1.4 0.036 14.0 1.1 1.8 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|119719629|ref|YP_920124.1| - 0.048 13.6 0.1 0.099 12.6 0.1 1.6 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|119719629|ref|YP_920124.1| - 0.072 12.9 1.4 0.24 11.2 1.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|119719629|ref|YP_920124.1| - 0.074 13.2 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|119719629|ref|YP_920124.1| - 0.11 12.7 0.2 1.3 9.3 0.0 2.3 2 1 0 2 2 2 0 Rio2, N-terminal DUF4364 PF14277.6 gi|119719629|ref|YP_920124.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF87 PF01935.17 gi|119719630|ref|YP_920125.1| - 2e-09 37.9 0.0 3e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|119719630|ref|YP_920125.1| - 0.00013 21.1 0.0 0.0002 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|119719630|ref|YP_920125.1| - 0.00034 20.0 0.0 0.00059 19.3 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|119719630|ref|YP_920125.1| - 0.00054 19.0 0.0 0.00082 18.4 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|119719630|ref|YP_920125.1| - 0.00072 19.8 0.3 0.034 14.4 0.3 2.3 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|119719630|ref|YP_920125.1| - 0.0037 17.2 0.3 0.066 13.1 0.1 2.2 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|119719630|ref|YP_920125.1| - 0.012 15.8 0.0 0.28 11.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF853 PF05872.12 gi|119719630|ref|YP_920125.1| - 0.022 13.4 0.0 0.15 10.6 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) AAA_18 PF13238.6 gi|119719630|ref|YP_920125.1| - 0.033 14.7 0.0 0.23 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|119719630|ref|YP_920125.1| - 0.061 13.7 0.1 0.14 12.5 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|119719630|ref|YP_920125.1| - 0.078 13.5 0.1 0.14 12.7 0.1 1.3 1 0 0 1 1 1 0 ABC transporter Adeno_IVa2 PF02456.15 gi|119719630|ref|YP_920125.1| - 0.078 11.8 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein PalH PF08733.10 gi|119719634|ref|YP_920129.1| - 1.5 7.7 4.6 5.9 5.8 0.2 2.2 2 0 0 2 2 2 0 PalH/RIM21 AAA_31 PF13614.6 gi|119719635|ref|YP_920130.1| - 2.5e-08 34.0 0.0 1.7e-07 31.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|119719635|ref|YP_920130.1| - 6.3e-06 25.8 1.9 2e-05 24.2 1.9 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|119719635|ref|YP_920130.1| - 1.3e-05 25.2 0.0 2.5e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|119719635|ref|YP_920130.1| - 3.3e-05 23.5 0.4 0.21 11.0 0.3 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|119719635|ref|YP_920130.1| - 0.0002 20.7 0.1 0.38 10.0 0.1 2.6 3 0 0 3 3 3 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|119719635|ref|YP_920130.1| - 0.0068 15.6 1.2 0.02 14.1 1.2 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|119719635|ref|YP_920130.1| - 0.0096 15.4 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family FAM184 PF15665.5 gi|119719636|ref|YP_920131.1| - 0.027 14.2 0.2 0.029 14.1 0.2 1.2 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B LXG PF04740.12 gi|119719636|ref|YP_920131.1| - 0.048 13.4 0.0 0.054 13.2 0.0 1.1 1 0 0 1 1 1 0 LXG domain of WXG superfamily Sec34 PF04136.15 gi|119719636|ref|YP_920131.1| - 0.16 11.8 0.0 0.22 11.4 0.0 1.1 1 0 0 1 1 1 0 Sec34-like family T2SSE PF00437.20 gi|119719637|ref|YP_920132.1| - 1.5e-17 63.6 0.0 3.4e-17 62.4 0.0 1.7 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|119719637|ref|YP_920132.1| - 2.3e-05 24.8 0.0 5.6e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|119719637|ref|YP_920132.1| - 0.0002 21.9 0.0 0.00034 21.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|119719637|ref|YP_920132.1| - 0.00024 20.7 0.2 0.0009 18.9 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|119719637|ref|YP_920132.1| - 0.00035 20.8 0.0 0.00059 20.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119719637|ref|YP_920132.1| - 0.00045 20.0 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|119719637|ref|YP_920132.1| - 0.00071 19.9 0.0 0.0018 18.6 0.0 1.6 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|119719637|ref|YP_920132.1| - 0.0015 18.2 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 gi|119719637|ref|YP_920132.1| - 0.0027 17.7 0.0 0.005 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|119719637|ref|YP_920132.1| - 0.0028 17.6 0.0 0.0054 16.7 0.0 1.6 1 0 0 1 1 1 1 NTPase Glyco_transf_4 PF13439.6 gi|119719637|ref|YP_920132.1| - 0.0031 17.5 0.0 0.0051 16.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 AAA_22 PF13401.6 gi|119719637|ref|YP_920132.1| - 0.0071 16.6 0.0 0.015 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|119719637|ref|YP_920132.1| - 0.0079 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.6 gi|119719637|ref|YP_920132.1| - 0.008 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|119719637|ref|YP_920132.1| - 0.0085 16.5 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|119719637|ref|YP_920132.1| - 0.0096 16.1 0.0 0.043 14.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|119719637|ref|YP_920132.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119719637|ref|YP_920132.1| - 0.014 15.9 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter DUF2075 PF09848.9 gi|119719637|ref|YP_920132.1| - 0.014 14.6 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|119719637|ref|YP_920132.1| - 0.018 14.4 0.0 0.035 13.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.6 gi|119719637|ref|YP_920132.1| - 0.018 15.5 0.0 0.03 14.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|119719637|ref|YP_920132.1| - 0.028 14.8 0.0 0.052 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|119719637|ref|YP_920132.1| - 0.052 13.7 0.0 1.7 8.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|119719637|ref|YP_920132.1| - 0.064 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|119719637|ref|YP_920132.1| - 0.066 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|119719637|ref|YP_920132.1| - 0.066 12.9 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|119719637|ref|YP_920132.1| - 0.092 12.1 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|119719637|ref|YP_920132.1| - 0.099 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase KAP_NTPase PF07693.14 gi|119719637|ref|YP_920132.1| - 0.1 11.8 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MeaB PF03308.16 gi|119719637|ref|YP_920132.1| - 0.12 11.3 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 gi|119719637|ref|YP_920132.1| - 0.13 11.6 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CPT PF07931.12 gi|119719637|ref|YP_920132.1| - 0.13 12.0 0.0 1.7 8.5 0.0 2.1 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.18 gi|119719637|ref|YP_920132.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SMC_N PF02463.19 gi|119719637|ref|YP_920132.1| - 0.17 11.3 0.0 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|119719637|ref|YP_920132.1| - 0.19 11.6 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Pox_A32 PF04665.12 gi|119719637|ref|YP_920132.1| - 0.21 11.0 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Helicase_C_2 PF13307.6 gi|119719638|ref|YP_920133.1| - 3.7e-06 27.2 0.0 7.5e-05 23.0 0.0 2.3 1 1 0 1 1 1 1 Helicase C-terminal domain TolA_bind_tri PF16331.5 gi|119719640|ref|YP_920135.1| - 0.014 15.4 0.1 0.47 10.6 0.0 2.9 3 0 0 3 3 3 0 TolA binding protein trimerisation PAS_12 PF18095.1 gi|119719640|ref|YP_920135.1| - 0.014 15.0 0.2 0.022 14.4 0.2 1.3 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain Spc7 PF08317.11 gi|119719640|ref|YP_920135.1| - 0.016 14.1 3.0 0.02 13.8 3.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Ph1570 PF09638.10 gi|119719640|ref|YP_920135.1| - 0.029 14.2 1.6 0.044 13.6 1.6 1.3 1 0 0 1 1 1 0 Ph1570 protein bZIP_2 PF07716.15 gi|119719640|ref|YP_920135.1| - 0.084 13.0 3.7 0.2 11.8 0.1 2.4 2 0 0 2 2 2 0 Basic region leucine zipper FlaC_arch PF05377.11 gi|119719640|ref|YP_920135.1| - 0.24 11.8 5.8 1.1 9.7 0.3 2.9 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) DMPK_coil PF08826.10 gi|119719640|ref|YP_920135.1| - 0.52 10.5 8.8 1.5 9.0 2.8 2.6 1 1 1 2 2 2 0 DMPK coiled coil domain like Lge1 PF11488.8 gi|119719640|ref|YP_920135.1| - 0.78 10.0 7.0 0.58 10.4 0.4 3.2 1 1 2 3 3 3 0 Transcriptional regulatory protein LGE1 SHOCT PF09851.9 gi|119719640|ref|YP_920135.1| - 1.1 9.1 0.0 1.1 9.1 0.0 4.0 4 0 0 4 4 4 0 Short C-terminal domain APG6_N PF17675.1 gi|119719640|ref|YP_920135.1| - 2.9 8.4 13.0 2.6 8.6 10.7 2.0 1 1 0 1 1 1 0 Apg6 coiled-coil region CdvA PF18822.1 gi|119719641|ref|YP_920136.1| - 3.3e-12 46.3 10.5 2.3e-06 27.4 2.0 2.2 2 0 0 2 2 2 2 CdvA-like coiled-coil domain SHOCT PF09851.9 gi|119719641|ref|YP_920136.1| - 4e-05 23.2 18.1 0.00026 20.6 2.4 3.5 3 0 0 3 3 3 2 Short C-terminal domain GvpG PF05120.12 gi|119719641|ref|YP_920136.1| - 0.003 17.5 1.4 0.003 17.5 1.4 2.9 2 1 1 3 3 3 1 Gas vesicle protein G Spc7 PF08317.11 gi|119719641|ref|YP_920136.1| - 0.008 15.1 12.4 0.12 11.3 8.4 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein TACC_C PF05010.14 gi|119719641|ref|YP_920136.1| - 0.01 15.6 7.7 0.11 12.3 0.2 3.3 3 1 0 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal BLOC1_2 PF10046.9 gi|119719641|ref|YP_920136.1| - 0.15 12.4 5.2 0.83 10.0 0.9 3.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|119719641|ref|YP_920136.1| - 0.2 11.8 0.8 10 6.3 0.3 2.5 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|119719641|ref|YP_920136.1| - 0.43 9.8 5.5 5 6.4 5.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Apolipoprotein PF01442.18 gi|119719641|ref|YP_920136.1| - 0.59 10.0 15.9 34 4.2 15.9 2.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain GTP-bdg_M PF16360.5 gi|119719641|ref|YP_920136.1| - 4.1 8.1 10.9 0.97 10.1 1.4 2.7 2 1 1 3 3 3 0 GTP-binding GTPase Middle Region TPR_MLP1_2 PF07926.12 gi|119719641|ref|YP_920136.1| - 4.7 7.3 20.8 0.1 12.7 5.3 2.7 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein APG6_N PF17675.1 gi|119719641|ref|YP_920136.1| - 5.1 7.6 17.3 1.6 9.2 7.3 2.7 1 1 0 2 2 2 0 Apg6 coiled-coil region Peptidase_M48_N PF16491.5 gi|119719642|ref|YP_920137.1| - 1.4 8.8 6.4 18 5.2 3.8 2.7 2 0 0 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices Ribosomal_L13e PF01294.18 gi|119719644|ref|YP_920139.1| - 9.4e-10 38.6 0.0 9.4e-10 38.6 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|119719644|ref|YP_920139.1| - 0.0015 18.3 0.7 0.0029 17.4 0.7 1.5 1 0 0 1 1 1 1 Ribosomal L15 LegC3_N PF18654.1 gi|119719644|ref|YP_920139.1| - 0.026 13.8 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 LegC3 N-terminal coiled-coil domain zf-RRN7 PF11781.8 gi|119719645|ref|YP_920140.1| - 1.4e-09 37.5 1.7 1.8e-09 37.1 1.7 1.1 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_RNApol_7kD PF03604.13 gi|119719645|ref|YP_920140.1| - 0.0009 18.9 1.0 0.3 10.8 0.2 2.2 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|119719645|ref|YP_920140.1| - 0.0017 18.3 0.6 0.0025 17.7 0.6 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119719645|ref|YP_920140.1| - 0.012 15.1 0.6 0.018 14.6 0.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|119719645|ref|YP_920140.1| - 0.013 15.4 0.9 0.02 14.8 0.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|119719645|ref|YP_920140.1| - 0.016 14.9 1.6 0.03 14.1 1.6 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Lar_restr_allev PF14354.6 gi|119719645|ref|YP_920140.1| - 0.027 14.8 0.9 0.65 10.4 1.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-HIT PF04438.16 gi|119719645|ref|YP_920140.1| - 0.03 14.2 5.8 0.12 12.3 5.8 1.8 1 1 0 1 1 1 0 HIT zinc finger DZR PF12773.7 gi|119719645|ref|YP_920140.1| - 0.04 13.9 1.2 0.29 11.2 1.3 1.9 1 1 1 2 2 2 0 Double zinc ribbon DUF2318 PF10080.9 gi|119719645|ref|YP_920140.1| - 0.04 14.0 0.2 0.043 13.9 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) C1_2 PF03107.16 gi|119719645|ref|YP_920140.1| - 0.042 14.2 0.5 0.047 14.0 0.5 1.2 1 0 0 1 1 1 0 C1 domain zf-RRPl_C4 PF17026.5 gi|119719645|ref|YP_920140.1| - 0.051 13.7 0.8 0.059 13.5 0.8 1.1 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type Cas_CXXC_CXXC PF09706.10 gi|119719645|ref|YP_920140.1| - 0.21 11.9 2.9 2.5 8.4 0.3 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) zinc_ribbon_2 PF13240.6 gi|119719645|ref|YP_920140.1| - 0.48 10.2 4.7 2.1 8.2 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119719645|ref|YP_920140.1| - 0.55 10.4 4.5 3.4 7.8 0.3 2.0 1 1 2 3 3 3 0 Zinc ribbon domain LSM PF01423.22 gi|119719646|ref|YP_920141.1| - 9.7e-19 66.8 0.1 1.2e-18 66.5 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|119719646|ref|YP_920141.1| - 0.00077 19.6 0.0 0.00085 19.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain AdoMet_Synthase PF01941.19 gi|119719647|ref|YP_920142.1| - 2.5e-166 553.4 0.1 2.8e-166 553.2 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|119719647|ref|YP_920142.1| - 0.14 12.8 0.1 0.51 11.0 0.0 1.9 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain DUF460 PF04312.13 gi|119719648|ref|YP_920143.1| - 1.9e-46 157.3 0.0 9.3e-46 155.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) Atg14 PF10186.9 gi|119719648|ref|YP_920143.1| - 7.3e-05 22.0 3.8 0.00011 21.5 3.8 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4763 PF15960.5 gi|119719648|ref|YP_920143.1| - 0.017 14.5 2.7 0.029 13.7 2.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) TelA PF05816.11 gi|119719648|ref|YP_920143.1| - 0.023 13.7 0.1 0.038 13.1 0.1 1.2 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) CENP-H PF05837.12 gi|119719648|ref|YP_920143.1| - 0.074 13.5 8.0 0.21 12.0 8.0 1.8 1 0 0 1 1 1 0 Centromere protein H (CENP-H) MctB PF11382.8 gi|119719648|ref|YP_920143.1| - 0.085 12.6 0.2 0.085 12.6 0.2 2.1 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB Cnn_1N PF07989.11 gi|119719648|ref|YP_920143.1| - 0.11 12.6 9.2 0.077 13.2 5.8 2.3 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 PV-1 PF06637.11 gi|119719648|ref|YP_920143.1| - 0.12 11.2 7.1 0.17 10.7 7.1 1.2 1 0 0 1 1 1 0 PV-1 protein (PLVAP) Uso1_p115_C PF04871.13 gi|119719648|ref|YP_920143.1| - 0.28 11.6 9.6 0.61 10.5 9.6 1.6 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4407 PF14362.6 gi|119719648|ref|YP_920143.1| - 0.32 10.3 3.6 0.81 9.0 3.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Acetyltransf_11 PF13720.6 gi|119719648|ref|YP_920143.1| - 0.33 11.4 1.5 5.2 7.6 0.5 3.2 3 0 0 3 3 3 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FUSC PF04632.12 gi|119719648|ref|YP_920143.1| - 0.51 8.8 7.8 0.85 8.1 7.8 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family DivIVA PF05103.13 gi|119719648|ref|YP_920143.1| - 0.53 10.4 6.2 0.51 10.4 2.1 2.2 1 1 1 2 2 2 0 DivIVA protein AATF-Che1 PF13339.6 gi|119719648|ref|YP_920143.1| - 0.9 10.2 3.6 2.7 8.7 3.6 1.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor ATG16 PF08614.11 gi|119719648|ref|YP_920143.1| - 1 9.6 15.9 3.5 7.8 15.9 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF641 PF04859.12 gi|119719648|ref|YP_920143.1| - 1.3 9.3 7.1 4 7.8 7.0 1.8 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) UPF0449 PF15136.6 gi|119719648|ref|YP_920143.1| - 1.4 9.4 7.6 8.7 6.9 2.0 2.5 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 GAS PF13851.6 gi|119719648|ref|YP_920143.1| - 1.5 8.1 10.7 3.8 6.8 10.7 1.6 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|119719648|ref|YP_920143.1| - 3 6.6 12.5 2.5 6.9 9.2 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein Prefoldin_2 PF01920.20 gi|119719648|ref|YP_920143.1| - 4.3 7.3 7.5 3.8 7.5 0.0 3.0 3 0 0 3 3 3 0 Prefoldin subunit OEP PF02321.18 gi|119719648|ref|YP_920143.1| - 9.9 5.9 12.9 26 4.6 12.9 1.7 1 0 0 1 1 1 0 Outer membrane efflux protein RIO1 PF01163.22 gi|119719649|ref|YP_920144.1| - 1.3e-46 158.6 0.0 1.8e-46 158.1 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|119719649|ref|YP_920144.1| - 3.1e-20 72.2 0.3 5.2e-20 71.5 0.3 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|119719649|ref|YP_920144.1| - 4.5e-08 33.3 0.1 0.0028 17.6 0.0 2.9 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|119719649|ref|YP_920144.1| - 0.0019 17.6 0.0 1.6 8.0 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family HrcA_DNA-bdg PF03444.15 gi|119719649|ref|YP_920144.1| - 0.0035 17.0 0.0 0.0081 15.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|119719649|ref|YP_920144.1| - 0.024 15.0 0.0 0.053 13.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Pkinase PF00069.25 gi|119719649|ref|YP_920144.1| - 0.18 11.1 0.0 14 4.9 0.0 2.1 2 0 0 2 2 2 0 Protein kinase domain Pkinase_fungal PF17667.1 gi|119719649|ref|YP_920144.1| - 0.27 10.0 0.0 0.36 9.6 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Metallophos PF00149.28 gi|119719650|ref|YP_920145.1| - 4.5e-13 50.2 0.0 5.8e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|119719650|ref|YP_920145.1| - 4.1e-12 46.6 0.0 1.5e-10 41.5 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribosomal_L21e PF01157.18 gi|119719650|ref|YP_920145.1| - 0.12 12.2 0.1 0.22 11.4 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L21e Methyltransf_25 PF13649.6 gi|119719651|ref|YP_920146.1| - 1.6e-09 38.3 0.1 2.2e-09 37.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119719651|ref|YP_920146.1| - 2.6e-09 37.6 0.2 4.5e-09 36.8 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119719651|ref|YP_920146.1| - 0.00069 19.5 0.0 0.0017 18.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119719651|ref|YP_920146.1| - 0.0011 19.7 0.0 0.0014 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119719651|ref|YP_920146.1| - 0.0041 16.9 0.0 0.0054 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MoeA_N PF03453.17 gi|119719651|ref|YP_920146.1| - 0.024 14.4 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 MoeA N-terminal region (domain I and II) CarboxypepD_reg PF13620.6 gi|119719652|ref|YP_920147.1| - 6.8e-11 42.3 43.1 3.6e-07 30.3 3.6 10.0 10 1 1 11 11 11 3 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|119719652|ref|YP_920147.1| - 0.00014 22.4 3.6 0.25 11.7 0.0 5.4 5 0 0 5 5 5 1 Domain of unknown function (DUF4198) CarbopepD_reg_2 PF13715.6 gi|119719652|ref|YP_920147.1| - 0.00021 21.2 6.0 0.06 13.4 0.3 4.5 4 0 0 4 4 4 1 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|119719652|ref|YP_920147.1| - 0.00027 20.9 47.3 0.25 11.4 1.2 11.4 11 1 0 11 11 11 3 Bacterial Ig-like domain (group 1) DUF4493 PF14900.6 gi|119719652|ref|YP_920147.1| - 0.035 14.0 4.9 0.19 11.6 0.1 3.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4493) Big_3 PF07523.12 gi|119719652|ref|YP_920147.1| - 0.051 13.9 4.4 54 4.2 0.3 5.2 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) Peptidase_M60_C PF18630.1 gi|119719652|ref|YP_920147.1| - 0.12 12.5 0.1 2.2 8.5 0.0 2.9 2 0 0 2 2 2 0 Peptidase M60 C-terminal domain PEGA PF08308.11 gi|119719652|ref|YP_920147.1| - 0.64 9.9 3.4 2.5 8.0 0.2 3.5 3 0 0 3 3 3 0 PEGA domain SpaA PF17802.1 gi|119719652|ref|YP_920147.1| - 3.6 8.0 26.1 0.28 11.5 0.2 6.8 8 1 0 8 8 8 0 Prealbumin-like fold domain Rad51 PF08423.11 gi|119719653|ref|YP_920148.1| - 3.3e-53 180.6 0.0 6.3e-53 179.7 0.0 1.4 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|119719653|ref|YP_920148.1| - 9e-08 31.9 0.2 1.3e-07 31.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|119719653|ref|YP_920148.1| - 3.7e-06 26.5 0.1 4.7e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 KaiC AAA_22 PF13401.6 gi|119719653|ref|YP_920148.1| - 0.00013 22.2 0.0 0.00018 21.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|119719653|ref|YP_920148.1| - 0.0031 17.0 0.3 0.0075 15.8 0.3 1.7 1 1 0 1 1 1 1 recA bacterial DNA recombination protein DUF3215 PF11503.8 gi|119719653|ref|YP_920148.1| - 0.0044 16.9 0.0 0.0089 15.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3215) ABC_tran PF00005.27 gi|119719653|ref|YP_920148.1| - 0.0045 17.5 0.0 0.0081 16.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter PAXNEB PF05625.11 gi|119719653|ref|YP_920148.1| - 0.011 14.9 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein DUF1805 PF08827.11 gi|119719653|ref|YP_920148.1| - 0.06 13.7 0.0 0.58 10.5 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1805) AAA PF00004.29 gi|119719653|ref|YP_920148.1| - 0.17 12.3 0.0 0.33 11.4 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NFACT-R_1 PF05670.13 gi|119719655|ref|YP_920150.1| - 5.2e-26 91.4 0.0 9.6e-26 90.6 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain FbpA PF05833.11 gi|119719655|ref|YP_920150.1| - 1.3e-19 70.4 0.0 1.3e-18 67.0 0.0 2.0 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_2 PF18297.1 gi|119719655|ref|YP_920150.1| - 0.00083 19.5 0.0 0.0016 18.6 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|119719655|ref|YP_920150.1| - 0.037 14.0 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain CBS PF00571.28 gi|119719656|ref|YP_920151.1| - 0.0032 17.9 1.2 0.12 12.8 0.0 3.4 4 0 0 4 4 4 1 CBS domain Mut7-C PF01927.16 gi|119719657|ref|YP_920152.1| - 5.8e-33 114.1 0.0 6.9e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain zf_CopZ PF18423.1 gi|119719657|ref|YP_920152.1| - 0.0065 16.4 0.1 0.01 15.8 0.1 1.3 1 0 0 1 1 1 1 Zinc binding domain Zn-ribbon_8 PF09723.10 gi|119719657|ref|YP_920152.1| - 0.016 15.3 2.1 1.1 9.5 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|119719657|ref|YP_920152.1| - 0.063 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|119719657|ref|YP_920152.1| - 2.9 7.9 5.5 2.7 7.9 1.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AMMECR1 PF01871.17 gi|119719658|ref|YP_920153.1| - 2.3e-53 180.2 0.0 2.6e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DUF4884 PF16225.5 gi|119719658|ref|YP_920153.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4884) Thioredoxin_3 PF13192.6 gi|119719659|ref|YP_920154.1| - 1.7e-07 31.2 0.0 3e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain ArsD PF06953.11 gi|119719659|ref|YP_920154.1| - 1.9e-06 28.2 0.0 3.1e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD DUF1525 PF07511.11 gi|119719659|ref|YP_920154.1| - 0.00047 20.3 0.0 0.00075 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1525) DNA_ligase_A_M PF01068.21 gi|119719660|ref|YP_920155.1| - 1.4e-64 217.5 0.0 2.1e-64 216.9 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|119719660|ref|YP_920155.1| - 6.5e-39 134.0 0.0 1.1e-38 133.3 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|119719660|ref|YP_920155.1| - 9.1e-22 77.5 0.0 2e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|119719660|ref|YP_920155.1| - 6.9e-05 23.2 0.1 0.00011 22.6 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|119719660|ref|YP_920155.1| - 0.017 15.1 0.1 0.054 13.5 0.0 1.9 2 0 0 2 2 2 0 DNA ligase OB-like domain CCDC53 PF10152.9 gi|119719661|ref|YP_920156.1| - 0.26 11.7 2.1 0.35 11.3 2.1 1.2 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex PfkB PF00294.24 gi|119719662|ref|YP_920157.1| - 4.5e-48 164.1 0.1 7.7e-48 163.3 0.1 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase tRNA-Thr_ED PF08915.11 gi|119719664|ref|YP_920159.1| - 2.2e-50 170.3 0.0 4.3e-50 169.3 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|119719664|ref|YP_920159.1| - 2.8e-24 85.1 1.0 9.2e-24 83.4 0.9 2.0 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|119719664|ref|YP_920159.1| - 6e-18 65.4 0.1 8.1e-17 61.8 0.2 2.3 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) INT_SG_DDX_CT_C PF15300.6 gi|119719664|ref|YP_920159.1| - 0.023 14.5 0.1 0.054 13.3 0.1 1.6 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus Radical_SAM PF04055.21 gi|119719665|ref|YP_920160.1| - 1.5e-11 44.9 0.1 1.2e-09 38.8 0.0 3.1 2 1 1 3 3 3 1 Radical SAM superfamily CoA_binding_2 PF13380.6 gi|119719665|ref|YP_920160.1| - 0.084 13.4 0.0 0.99 9.9 0.0 2.3 1 1 1 2 2 2 0 CoA binding domain MJ1316 PF04457.12 gi|119719666|ref|YP_920161.1| - 2.5e-10 40.9 0.0 3e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain bPH_4 PF06713.11 gi|119719666|ref|YP_920161.1| - 0.071 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain Gp_dh_C PF02800.20 gi|119719667|ref|YP_920162.1| - 1.3e-63 213.3 0.0 1.8e-63 212.8 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|119719667|ref|YP_920162.1| - 2.5e-35 120.8 0.0 8.1e-35 119.2 0.0 1.9 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Metallophos_2 PF12850.7 gi|119719668|ref|YP_920163.1| - 5.7e-12 46.1 0.1 1e-11 45.3 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|119719668|ref|YP_920163.1| - 4.4e-10 40.4 3.5 2.2e-09 38.1 3.5 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|119719668|ref|YP_920163.1| - 0.0074 15.6 0.0 0.68 9.2 0.0 2.3 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DUF35_N PF12172.8 gi|119719668|ref|YP_920163.1| - 0.083 12.8 2.0 0.17 11.8 2.0 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CarboxypepD_reg PF13620.6 gi|119719670|ref|YP_920165.1| - 7.8e-16 58.1 4.1 6.2e-09 36.0 0.9 3.8 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|119719670|ref|YP_920165.1| - 1e-08 35.0 0.0 2.3e-05 24.3 0.0 2.7 1 1 1 2 2 2 2 CarboxypepD_reg-like domain Thioredoxin_8 PF13905.6 gi|119719670|ref|YP_920165.1| - 1.9e-07 31.3 0.0 5e-07 29.9 0.0 1.8 2 0 0 2 2 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|119719670|ref|YP_920165.1| - 4.5e-05 23.4 0.0 0.0097 15.9 0.0 2.6 1 1 0 2 2 2 1 Thioredoxin PEGA PF08308.11 gi|119719670|ref|YP_920165.1| - 4.7e-05 23.2 0.0 0.04 13.8 0.0 2.6 2 0 0 2 2 2 2 PEGA domain AhpC-TSA PF00578.21 gi|119719670|ref|YP_920165.1| - 7.2e-05 22.7 0.0 0.0002 21.3 0.0 1.7 2 0 0 2 2 2 1 AhpC/TSA family Thioredoxin_2 PF13098.6 gi|119719670|ref|YP_920165.1| - 0.00043 20.7 0.0 0.002 18.6 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin-like domain SCO1-SenC PF02630.14 gi|119719670|ref|YP_920165.1| - 0.0031 17.4 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.10 gi|119719670|ref|YP_920165.1| - 0.0035 17.1 0.0 0.0079 15.9 0.0 1.6 1 0 0 1 1 1 1 Redoxin Big_1 PF02369.16 gi|119719670|ref|YP_920165.1| - 0.0089 16.0 0.1 0.27 11.3 0.0 2.8 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) Thioredoxin_3 PF13192.6 gi|119719670|ref|YP_920165.1| - 0.024 14.7 0.4 0.38 10.8 0.1 2.5 1 1 1 2 2 2 0 Thioredoxin domain DUF2205 PF10224.9 gi|119719671|ref|YP_920166.1| - 2.1e-05 24.4 1.7 2.1e-05 24.4 1.7 1.8 2 0 0 2 2 2 1 Short coiled-coil protein Prefoldin PF02996.17 gi|119719671|ref|YP_920166.1| - 0.00012 22.0 3.0 0.061 13.2 0.9 2.2 2 0 0 2 2 2 2 Prefoldin subunit Not3 PF04065.15 gi|119719671|ref|YP_920166.1| - 0.00097 18.6 0.5 0.0012 18.3 0.5 1.1 1 0 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component FliJ PF02050.16 gi|119719671|ref|YP_920166.1| - 0.0045 17.2 0.4 0.069 13.4 0.2 2.2 2 0 0 2 2 2 1 Flagellar FliJ protein Spectrin PF00435.21 gi|119719671|ref|YP_920166.1| - 0.0063 17.0 1.3 0.52 10.8 0.1 2.1 2 0 0 2 2 2 1 Spectrin repeat Uds1 PF15456.6 gi|119719671|ref|YP_920166.1| - 0.0076 16.4 4.9 0.15 12.2 4.8 2.0 1 1 0 1 1 1 1 Up-regulated During Septation NPV_P10 PF05531.12 gi|119719671|ref|YP_920166.1| - 0.011 16.2 3.6 0.67 10.5 3.6 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein RmuC PF02646.16 gi|119719671|ref|YP_920166.1| - 0.015 14.5 0.7 0.094 11.8 0.2 1.9 2 0 0 2 2 2 0 RmuC family Snapin_Pallidin PF14712.6 gi|119719671|ref|YP_920166.1| - 0.017 15.6 3.9 1.2 9.6 1.0 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Rota_NSP3 PF01665.16 gi|119719671|ref|YP_920166.1| - 0.02 14.0 0.4 0.024 13.8 0.4 1.0 1 0 0 1 1 1 0 Rotavirus non-structural protein NSP3 DivIC PF04977.15 gi|119719671|ref|YP_920166.1| - 0.029 14.1 3.5 0.075 12.8 1.0 2.1 2 0 0 2 2 2 0 Septum formation initiator ThiS PF02597.20 gi|119719671|ref|YP_920166.1| - 0.033 14.8 1.0 7.9 7.2 0.0 2.3 1 1 0 2 2 2 0 ThiS family BLOC1_2 PF10046.9 gi|119719671|ref|YP_920166.1| - 0.042 14.2 1.9 0.042 14.2 1.9 2.1 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 THOC7 PF05615.13 gi|119719671|ref|YP_920166.1| - 0.06 13.6 2.4 1.9 8.8 0.3 2.1 2 0 0 2 2 2 0 Tho complex subunit 7 FBPase_2 PF06874.11 gi|119719671|ref|YP_920166.1| - 0.062 11.6 0.3 0.071 11.4 0.3 1.1 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase DASH_Spc19 PF08287.11 gi|119719671|ref|YP_920166.1| - 0.064 13.2 4.2 0.059 13.3 2.5 1.7 1 1 0 1 1 1 0 Spc19 3HCDH PF00725.22 gi|119719671|ref|YP_920166.1| - 0.076 13.6 0.0 0.11 13.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Vmethyltransf_C PF08456.10 gi|119719671|ref|YP_920166.1| - 0.078 12.5 0.3 0.091 12.3 0.3 1.2 1 0 0 1 1 1 0 Viral methyltransferase C-terminal ABC_tran_CTD PF16326.5 gi|119719671|ref|YP_920166.1| - 0.13 12.6 6.5 0.12 12.6 2.7 2.2 2 0 0 2 2 2 0 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|119719671|ref|YP_920166.1| - 0.15 12.2 4.0 0.28 11.4 4.0 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DASH_Dam1 PF08653.10 gi|119719671|ref|YP_920166.1| - 0.18 11.6 0.8 12 5.8 0.1 2.8 2 1 1 3 3 3 0 DASH complex subunit Dam1 DUF639 PF04842.12 gi|119719671|ref|YP_920166.1| - 0.19 11.1 1.6 1.2 8.5 0.1 2.1 1 1 0 2 2 2 0 Plant protein of unknown function (DUF639) OEP PF02321.18 gi|119719671|ref|YP_920166.1| - 0.22 11.3 4.2 0.11 12.3 1.0 1.8 2 0 0 2 2 2 0 Outer membrane efflux protein DUF1664 PF07889.12 gi|119719671|ref|YP_920166.1| - 0.26 11.3 3.5 0.75 9.8 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DHR10 PF18595.1 gi|119719671|ref|YP_920166.1| - 0.39 10.8 7.3 0.41 10.7 2.7 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DUF3450 PF11932.8 gi|119719671|ref|YP_920166.1| - 0.41 9.9 6.2 0.46 9.7 4.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Prefoldin_2 PF01920.20 gi|119719671|ref|YP_920166.1| - 0.42 10.6 8.4 0.51 10.3 2.8 2.7 2 1 1 3 3 3 0 Prefoldin subunit Spc7 PF08317.11 gi|119719671|ref|YP_920166.1| - 0.59 9.0 6.9 1.2 7.9 7.0 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein SlyX PF04102.12 gi|119719671|ref|YP_920166.1| - 0.68 10.6 6.3 2.4 8.8 1.2 2.5 2 0 0 2 2 2 0 SlyX CorA PF01544.18 gi|119719671|ref|YP_920166.1| - 2.9 7.1 6.2 21 4.3 6.2 1.9 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein zf-C4H2 PF10146.9 gi|119719671|ref|YP_920166.1| - 3 8.1 5.6 4.4 7.6 5.6 1.3 1 1 0 1 1 1 0 Zinc finger-containing protein Prenyltransf PF01255.19 gi|119719672|ref|YP_920167.1| - 2.8e-77 259.2 0.0 3.3e-77 259.0 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DeoC PF01791.9 gi|119719673|ref|YP_920168.1| - 1.6e-14 54.1 0.1 2.1e-14 53.7 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase ACP_syn_III_C PF08541.10 gi|119719674|ref|YP_920169.1| - 4.3e-12 46.0 0.0 9.1e-12 45.0 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|119719674|ref|YP_920169.1| - 1.6e-06 27.6 0.0 2.5e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|119719674|ref|YP_920169.1| - 5.5e-05 22.9 1.3 0.00036 20.3 0.6 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|119719674|ref|YP_920169.1| - 0.00058 19.6 0.1 0.032 13.9 0.0 2.2 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|119719674|ref|YP_920169.1| - 0.0045 16.9 0.0 0.0069 16.3 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|119719675|ref|YP_920170.1| - 1.4e-22 80.4 0.0 3.3e-22 79.1 0.0 1.7 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|119719675|ref|YP_920170.1| - 1e-12 47.8 1.4 4.8e-11 42.4 0.3 3.2 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|119719675|ref|YP_920170.1| - 1.5e-06 28.0 3.8 0.00014 21.5 2.4 2.8 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|119719675|ref|YP_920170.1| - 2.2e-05 24.5 0.4 0.0051 16.8 0.0 3.6 4 0 0 4 4 4 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|119719675|ref|YP_920170.1| - 4.7e-05 23.2 0.6 0.01 15.7 0.2 2.4 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|119719676|ref|YP_920171.1| - 2.2e-18 66.0 3.5 2.9e-18 65.6 3.5 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|119719676|ref|YP_920171.1| - 1.5e-09 37.5 0.4 2.8e-09 36.7 0.4 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|119719676|ref|YP_920171.1| - 0.00055 19.9 0.2 0.0009 19.2 0.2 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|119719676|ref|YP_920171.1| - 0.0012 18.6 0.2 0.0016 18.1 0.2 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|119719676|ref|YP_920171.1| - 0.0025 17.9 2.8 0.0066 16.6 2.8 1.7 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|119719676|ref|YP_920171.1| - 0.012 15.6 0.3 0.017 15.1 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|119719676|ref|YP_920171.1| - 0.066 12.7 2.6 0.88 9.1 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|119719676|ref|YP_920171.1| - 0.14 11.9 6.0 0.47 10.2 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119719676|ref|YP_920171.1| - 0.15 12.0 0.2 0.15 12.0 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119719676|ref|YP_920171.1| - 0.19 11.2 3.4 0.62 9.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 gi|119719676|ref|YP_920171.1| - 0.28 9.9 0.2 0.32 9.7 0.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase ADK_lid PF05191.14 gi|119719676|ref|YP_920171.1| - 0.45 10.6 2.6 18 5.4 0.2 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|119719676|ref|YP_920171.1| - 4.5 7.9 5.6 0.97 10.0 1.3 1.9 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|119719677|ref|YP_920172.1| - 0.00057 20.0 0.9 0.001 19.1 0.9 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|119719677|ref|YP_920172.1| - 0.0018 18.2 0.2 0.0026 17.7 0.2 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type HypA PF01155.19 gi|119719677|ref|YP_920172.1| - 0.034 14.1 0.1 0.045 13.8 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Toxin-deaminase PF14424.6 gi|119719677|ref|YP_920172.1| - 0.04 14.0 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases zf-C3HC4_5 PF17121.5 gi|119719677|ref|YP_920172.1| - 0.042 13.7 1.2 0.3 11.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.12 gi|119719677|ref|YP_920172.1| - 0.25 10.9 2.6 6.3 6.4 0.3 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|119719677|ref|YP_920172.1| - 0.26 10.8 3.4 3.3 7.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|119719677|ref|YP_920172.1| - 0.56 10.4 0.2 0.56 10.4 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Methyltr_RsmB-F PF01189.17 gi|119719678|ref|YP_920173.1| - 5.8e-30 104.4 0.0 8.6e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F HTH_20 PF12840.7 gi|119719679|ref|YP_920174.1| - 3.6e-05 23.8 0.0 8.3e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|119719679|ref|YP_920174.1| - 0.00013 22.0 0.1 0.0006 19.9 0.1 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|119719679|ref|YP_920174.1| - 0.02 14.8 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|119719679|ref|YP_920174.1| - 0.054 13.5 0.2 0.099 12.6 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Phage_holin_4_2 PF04020.13 gi|119719679|ref|YP_920174.1| - 0.36 11.5 9.7 0.16 12.6 7.1 1.7 1 1 1 2 2 2 0 Mycobacterial 4 TMS phage holin, superfamily IV DUF3955 PF13127.6 gi|119719679|ref|YP_920174.1| - 3 7.7 8.1 0.8 9.6 4.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) A2L_zn_ribbon PF08792.10 gi|119719681|ref|YP_920176.1| - 0.0012 18.4 0.1 0.51 10.1 0.0 2.3 2 0 0 2 2 2 2 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119719681|ref|YP_920176.1| - 0.0023 17.9 0.2 0.0039 17.1 0.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF35_N PF12172.8 gi|119719681|ref|YP_920176.1| - 0.0025 17.7 3.7 0.29 11.1 0.2 2.6 3 0 0 3 3 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|119719681|ref|YP_920176.1| - 0.006 16.5 0.8 0.014 15.3 0.8 1.7 1 1 0 1 1 1 1 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|119719681|ref|YP_920176.1| - 0.013 15.4 1.2 0.31 11.0 0.1 2.6 3 0 0 3 3 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|119719681|ref|YP_920176.1| - 0.014 14.7 1.6 0.24 10.9 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|119719681|ref|YP_920176.1| - 0.015 15.4 0.2 6.3 7.0 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|119719681|ref|YP_920176.1| - 0.017 15.2 2.3 0.26 11.4 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119719681|ref|YP_920176.1| - 0.053 13.4 0.1 0.09 12.7 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|119719681|ref|YP_920176.1| - 0.067 13.4 0.1 0.6 10.3 0.0 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-IS66 PF13005.7 gi|119719681|ref|YP_920176.1| - 0.073 13.5 1.7 1.2 9.6 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prim_Zn_Ribbon PF08273.12 gi|119719681|ref|YP_920176.1| - 0.18 12.1 1.0 9.4 6.6 0.3 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.6 gi|119719681|ref|YP_920176.1| - 0.38 10.5 4.2 1.6 8.6 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119719681|ref|YP_920176.1| - 0.41 10.2 8.0 1.4 8.5 5.7 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|119719681|ref|YP_920176.1| - 0.57 9.9 3.8 12 5.7 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin_2 PF18073.1 gi|119719681|ref|YP_920176.1| - 0.61 9.9 6.5 1 9.2 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ACC PF17848.1 gi|119719681|ref|YP_920176.1| - 4.3 7.5 6.9 10 6.3 0.7 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF2569 PF10754.9 gi|119719682|ref|YP_920177.1| - 8.5e-05 23.0 2.6 0.00016 22.2 1.5 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2569) SpoIIM PF01944.17 gi|119719682|ref|YP_920177.1| - 0.0014 18.6 2.4 0.0029 17.7 2.4 1.5 1 1 0 1 1 1 1 Stage II sporulation protein M PGK PF00162.19 gi|119719683|ref|YP_920178.1| - 3.4e-115 385.0 0.1 4.3e-115 384.7 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Arginase PF00491.21 gi|119719683|ref|YP_920178.1| - 0.13 11.7 0.1 0.37 10.3 0.0 1.7 2 1 0 2 2 2 0 Arginase family PAC2 PF09754.9 gi|119719684|ref|YP_920179.1| - 2.2e-34 119.3 0.0 2.5e-34 119.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family HSP20 PF00011.21 gi|119719685|ref|YP_920180.1| - 7.7e-12 45.3 0.0 1.2e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|119719685|ref|YP_920180.1| - 3.5e-05 23.3 0.0 6.6e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|119719685|ref|YP_920180.1| - 0.0055 17.1 0.0 0.01 16.2 0.0 1.5 1 1 0 1 1 1 1 PIH1 CS-like domain HTH_3 PF01381.22 gi|119719686|ref|YP_920181.1| - 3.2e-08 33.5 0.0 6.6e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|119719686|ref|YP_920181.1| - 1.7e-06 28.3 0.0 4.8e-06 26.8 0.0 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|119719686|ref|YP_920181.1| - 7.2e-05 22.7 0.0 0.00016 21.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|119719686|ref|YP_920181.1| - 0.011 15.9 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DUF1902 PF08972.11 gi|119719686|ref|YP_920181.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) T2SSF PF00482.23 gi|119719687|ref|YP_920182.1| - 2.5e-11 43.6 4.3 2.5e-11 43.6 4.3 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Amidohydro_3 PF07969.11 gi|119719688|ref|YP_920183.1| - 2e-66 225.4 0.0 4e-66 224.4 0.0 1.4 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|119719688|ref|YP_920183.1| - 0.00029 20.3 0.0 0.012 15.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Pyridox_ox_2 PF12900.7 gi|119719688|ref|YP_920183.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase baeRF_family10 PF18854.1 gi|119719689|ref|YP_920184.1| - 0.074 13.3 0.0 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 TPP_enzyme_C PF02775.21 gi|119719691|ref|YP_920186.1| - 4.1e-28 98.1 0.1 7.7e-28 97.2 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|119719691|ref|YP_920186.1| - 4.2e-15 56.1 0.1 2.5e-14 53.6 0.0 2.0 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.18 gi|119719691|ref|YP_920186.1| - 4.6e-10 39.4 0.9 0.00043 19.9 0.1 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|119719691|ref|YP_920186.1| - 4.4e-08 32.6 22.7 1e-05 25.1 6.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119719691|ref|YP_920186.1| - 9.1e-08 31.8 20.4 0.00018 21.4 3.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119719691|ref|YP_920186.1| - 8.6e-06 25.8 11.4 2.2e-05 24.5 11.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719691|ref|YP_920186.1| - 1.1e-05 25.4 11.9 0.00014 21.9 12.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119719691|ref|YP_920186.1| - 3.9e-05 23.7 5.9 3.9e-05 23.7 5.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719691|ref|YP_920186.1| - 6.5e-05 22.8 21.5 0.00046 20.1 4.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119719691|ref|YP_920186.1| - 0.00057 20.4 13.7 0.002 18.7 12.0 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119719691|ref|YP_920186.1| - 0.016 16.1 10.1 0.071 14.1 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|119719691|ref|YP_920186.1| - 0.021 15.3 8.5 0.92 10.0 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119719691|ref|YP_920186.1| - 0.024 15.1 4.0 0.024 15.1 4.0 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Orbi_VP6 PF01516.16 gi|119719691|ref|YP_920186.1| - 0.076 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Orbivirus helicase VP6 CedA PF10729.9 gi|119719691|ref|YP_920186.1| - 0.082 12.8 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 Cell division activator CedA E1_dh PF00676.20 gi|119719691|ref|YP_920186.1| - 0.13 11.2 0.6 0.29 10.1 0.6 1.5 1 0 0 1 1 1 0 Dehydrogenase E1 component Fer4_17 PF13534.6 gi|119719691|ref|YP_920186.1| - 2.4 8.8 11.2 5.5 7.6 2.1 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR PF01558.18 gi|119719692|ref|YP_920187.1| - 3.6e-35 121.6 0.0 4.2e-35 121.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AdoHcyase_NAD PF00670.21 gi|119719692|ref|YP_920187.1| - 0.36 10.9 3.2 15 5.6 0.0 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FAD_binding_3 PF01494.19 gi|119719693|ref|YP_920188.1| - 1.1e-06 28.1 1.7 0.0011 18.2 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|119719693|ref|YP_920188.1| - 0.00033 20.0 0.1 0.00059 19.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119719693|ref|YP_920188.1| - 0.0026 18.3 0.2 0.02 15.5 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|119719693|ref|YP_920188.1| - 0.003 17.8 1.8 0.013 15.7 0.1 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|119719693|ref|YP_920188.1| - 0.0088 15.1 0.1 0.46 9.5 0.0 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|119719693|ref|YP_920188.1| - 0.011 15.3 0.7 0.037 13.6 0.1 1.9 1 1 1 2 2 2 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|119719693|ref|YP_920188.1| - 0.045 12.4 0.0 0.14 10.8 0.0 1.7 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_2 PF00890.24 gi|119719693|ref|YP_920188.1| - 0.059 12.4 0.0 0.22 10.6 0.0 1.9 1 1 1 2 2 2 0 FAD binding domain PadR PF03551.14 gi|119719694|ref|YP_920189.1| - 0.00032 20.6 1.0 0.0029 17.5 1.0 2.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|119719694|ref|YP_920189.1| - 0.0015 19.0 0.0 0.0044 17.5 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|119719694|ref|YP_920189.1| - 0.022 14.7 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family ArsR PF09824.9 gi|119719694|ref|YP_920189.1| - 0.098 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_12 PF08461.10 gi|119719694|ref|YP_920189.1| - 0.1 12.5 0.5 0.46 10.5 0.3 2.1 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_34 PF13601.6 gi|119719694|ref|YP_920189.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain CarboxypepD_reg PF13620.6 gi|119719695|ref|YP_920190.1| - 4.2e-11 42.9 4.1 1.8e-06 28.1 0.1 3.6 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain SpaA PF17802.1 gi|119719695|ref|YP_920190.1| - 0.00018 21.8 0.0 0.4 11.0 0.0 2.7 2 1 0 2 2 2 2 Prealbumin-like fold domain PapC_N PF13954.6 gi|119719695|ref|YP_920190.1| - 0.0015 18.5 0.0 0.023 14.7 0.0 2.2 2 0 0 2 2 2 1 PapC N-terminal domain MG4 PF17789.1 gi|119719695|ref|YP_920190.1| - 0.0021 18.2 0.0 0.0066 16.6 0.0 1.8 1 0 0 1 1 1 1 Macroglobulin domain MG4 DUF2012 PF09430.10 gi|119719695|ref|YP_920190.1| - 0.0033 17.5 0.0 0.015 15.4 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2012) fn3_3 PF14686.6 gi|119719695|ref|YP_920190.1| - 0.0052 16.5 0.3 3.6 7.4 0.0 3.5 3 0 0 3 3 3 1 Polysaccharide lyase family 4, domain II CarbopepD_reg_2 PF13715.6 gi|119719695|ref|YP_920190.1| - 0.034 14.1 0.0 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 CarboxypepD_reg-like domain Y_Y_Y PF07495.13 gi|119719695|ref|YP_920190.1| - 0.039 13.9 0.0 3.4 7.7 0.0 2.9 3 0 0 3 3 3 0 Y_Y_Y domain SdrD_B PF17210.3 gi|119719695|ref|YP_920190.1| - 0.093 13.0 0.0 2 8.7 0.0 2.4 2 0 0 2 2 2 0 SdrD B-like domain tRNA-synt_1f PF01921.18 gi|119719696|ref|YP_920191.1| - 3.9e-91 305.7 0.7 1e-90 304.3 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) Nudix_N_2 PF14803.6 gi|119719696|ref|YP_920191.1| - 0.058 13.3 2.9 0.17 11.8 2.9 1.8 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_10 PF10058.9 gi|119719696|ref|YP_920191.1| - 0.075 12.8 0.5 0.16 11.8 0.5 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DHHC PF01529.20 gi|119719697|ref|YP_920192.1| - 0.0066 16.6 1.8 0.0091 16.1 1.8 1.3 1 0 0 1 1 1 1 DHHC palmitoyltransferase Ni_hydr_CYTB PF01292.20 gi|119719697|ref|YP_920192.1| - 0.024 14.2 4.2 0.036 13.7 4.2 1.4 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 Syndecan PF01034.20 gi|119719697|ref|YP_920192.1| - 0.41 10.6 4.4 2 8.4 0.0 2.4 2 0 0 2 2 2 0 Syndecan domain FeoB_associated PF12669.7 gi|119719697|ref|YP_920192.1| - 1.1 9.8 2.5 6 7.4 0.0 2.4 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF4191 PF13829.6 gi|119719697|ref|YP_920192.1| - 4 6.7 5.9 12 5.2 2.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) CrgA PF06781.12 gi|119719697|ref|YP_920192.1| - 7.8 6.6 9.4 1.5 9.0 1.6 2.4 1 1 1 2 2 2 0 Cell division protein CrgA NPV_P10 PF05531.12 gi|119719698|ref|YP_920193.1| - 8.2e-07 29.4 34.4 0.0019 18.6 3.3 7.7 3 3 5 8 8 8 2 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|119719698|ref|YP_920193.1| - 4.7e-06 25.7 99.7 0.0016 17.4 19.5 5.1 2 1 3 5 5 5 3 Spc7 kinetochore protein Apolipoprotein PF01442.18 gi|119719698|ref|YP_920193.1| - 1.6e-05 24.9 9.7 1.6e-05 24.9 9.7 5.1 1 1 4 5 5 3 2 Apolipoprotein A1/A4/E domain CorA PF01544.18 gi|119719698|ref|YP_920193.1| - 6.9e-05 22.3 7.7 6.9e-05 22.3 7.7 4.7 1 1 3 5 5 4 2 CorA-like Mg2+ transporter protein GAS PF13851.6 gi|119719698|ref|YP_920193.1| - 0.00011 21.6 18.9 0.00011 21.6 18.9 5.4 1 1 3 5 5 4 2 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.12 gi|119719698|ref|YP_920193.1| - 0.00024 21.2 38.4 0.029 14.4 9.0 6.3 1 1 2 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|119719698|ref|YP_920193.1| - 0.00054 20.0 52.0 0.0015 18.6 4.9 6.7 2 1 5 7 7 7 2 Protein of unknown function (DUF1664) DUF4201 PF13870.6 gi|119719698|ref|YP_920193.1| - 0.0016 18.2 16.5 0.0016 18.2 16.5 6.1 1 1 3 5 5 5 2 Domain of unknown function (DUF4201) DASH_Duo1 PF08651.10 gi|119719698|ref|YP_920193.1| - 0.002 17.9 0.2 0.002 17.9 0.2 6.2 6 2 2 9 9 8 2 DASH complex subunit Duo1 Leu_zip PF15294.6 gi|119719698|ref|YP_920193.1| - 0.0058 16.2 26.2 0.0058 16.2 26.2 4.7 1 1 4 5 5 4 1 Leucine zipper DHR10 PF18595.1 gi|119719698|ref|YP_920193.1| - 0.0058 16.7 19.2 0.0058 16.7 19.2 6.9 1 1 7 8 8 7 1 Designed helical repeat protein 10 domain Fzo_mitofusin PF04799.13 gi|119719698|ref|YP_920193.1| - 0.006 16.2 2.0 0.006 16.2 2.0 7.0 1 1 6 7 7 6 1 fzo-like conserved region FTA4 PF13093.6 gi|119719698|ref|YP_920193.1| - 0.0085 16.0 16.3 0.0085 16.0 16.3 5.0 2 2 1 3 3 2 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 BLOC1_2 PF10046.9 gi|119719698|ref|YP_920193.1| - 0.012 15.9 70.5 0.27 11.6 4.2 7.8 2 1 6 9 9 9 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|119719698|ref|YP_920193.1| - 0.12 12.6 30.1 0.056 13.7 3.1 6.4 3 1 4 7 7 7 0 Bacterial protein of unknown function (DUF948) FidL_like PF15941.5 gi|119719698|ref|YP_920193.1| - 0.17 12.3 2.3 0.45 11.0 0.4 2.7 2 1 0 2 2 2 0 FidL-like putative membrane protein Mce4_CUP1 PF11887.8 gi|119719698|ref|YP_920193.1| - 0.37 10.2 7.3 0.13 11.7 1.0 2.5 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative AAA_13 PF13166.6 gi|119719698|ref|YP_920193.1| - 0.47 9.0 74.0 0.0028 16.4 28.8 4.0 1 1 2 3 3 3 0 AAA domain Filament PF00038.21 gi|119719698|ref|YP_920193.1| - 1.8 8.1 85.9 0.025 14.2 10.1 5.3 2 2 3 5 5 5 0 Intermediate filament protein Sec34 PF04136.15 gi|119719698|ref|YP_920193.1| - 1.9 8.3 54.4 0.22 11.4 7.2 6.6 1 1 3 6 6 6 0 Sec34-like family DUF3552 PF12072.8 gi|119719698|ref|YP_920193.1| - 1.9 7.8 107.9 0.02 14.3 24.1 5.9 1 1 4 6 6 5 0 Domain of unknown function (DUF3552) COG2 PF06148.11 gi|119719698|ref|YP_920193.1| - 4.5 7.4 61.9 1 9.4 4.5 7.0 1 1 5 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 HMMR_N PF15905.5 gi|119719698|ref|YP_920193.1| - 7.9 5.8 100.8 2.2 7.7 34.7 4.6 1 1 3 4 4 3 0 Hyaluronan mediated motility receptor N-terminal DUF1925 PF09094.11 gi|119719701|ref|YP_920196.1| - 2.2e-35 120.8 0.8 4.4e-35 119.8 0.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_57 PF03065.15 gi|119719701|ref|YP_920196.1| - 3.5e-31 108.6 0.0 5.9e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1926 PF09095.11 gi|119719701|ref|YP_920196.1| - 1e-28 100.8 0.0 1.5e-13 51.0 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF1926) Glyco_hydro_38N PF01074.22 gi|119719701|ref|YP_920196.1| - 4.5e-06 26.2 0.0 1.8e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_transf_5 PF08323.11 gi|119719702|ref|YP_920197.1| - 1.3e-27 97.0 0.0 2.3e-27 96.3 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|119719702|ref|YP_920197.1| - 5.9e-24 84.5 0.0 1e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119719702|ref|YP_920197.1| - 9.7e-20 71.4 0.0 2e-19 70.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119719702|ref|YP_920197.1| - 2.4e-05 24.4 3.2 0.00022 21.3 1.9 3.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119719702|ref|YP_920197.1| - 0.0022 18.4 6.3 0.0026 18.2 4.1 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119719702|ref|YP_920197.1| - 0.0084 16.5 0.0 0.027 14.9 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 HTH_38 PF13936.6 gi|119719703|ref|YP_920198.1| - 0.00034 20.3 0.9 0.00056 19.6 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|119719703|ref|YP_920198.1| - 0.00036 20.2 0.0 0.00082 19.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_40 PF14493.6 gi|119719703|ref|YP_920198.1| - 0.0016 18.8 0.3 0.0036 17.7 0.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|119719703|ref|YP_920198.1| - 0.002 17.8 0.1 0.01 15.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Terminase_5 PF06056.12 gi|119719703|ref|YP_920198.1| - 0.0062 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) SIKE PF05769.11 gi|119719703|ref|YP_920198.1| - 0.0076 16.2 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 SIKE family FlaC_arch PF05377.11 gi|119719703|ref|YP_920198.1| - 0.0086 16.4 0.6 0.02 15.3 0.3 1.7 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) GerE PF00196.19 gi|119719703|ref|YP_920198.1| - 0.0096 15.5 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_DeoR PF08220.12 gi|119719703|ref|YP_920198.1| - 0.01 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|119719703|ref|YP_920198.1| - 0.013 15.5 0.6 0.023 14.7 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_IclR PF09339.10 gi|119719703|ref|YP_920198.1| - 0.059 13.2 1.1 0.1 12.4 0.0 1.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain COG2 PF06148.11 gi|119719703|ref|YP_920198.1| - 0.074 13.1 0.1 0.17 12.0 0.1 1.6 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 HTH_31 PF13560.6 gi|119719703|ref|YP_920198.1| - 0.09 13.1 2.4 0.22 11.9 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain ATPase PF06745.13 gi|119719704|ref|YP_920199.1| - 4.3e-87 291.3 0.0 4.8e-87 291.1 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|119719704|ref|YP_920199.1| - 1.3e-06 27.3 0.0 2.5e-06 26.4 0.0 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|119719704|ref|YP_920199.1| - 7.1e-05 22.5 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|119719704|ref|YP_920199.1| - 0.0013 18.1 0.3 0.0053 16.0 0.0 1.9 2 0 0 2 2 2 1 Rad51 MEDS PF14417.6 gi|119719704|ref|YP_920199.1| - 0.0036 17.2 0.0 0.0066 16.3 0.0 1.5 1 1 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DnaB_C PF03796.15 gi|119719704|ref|YP_920199.1| - 0.014 14.7 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain T2SSE PF00437.20 gi|119719704|ref|YP_920199.1| - 0.015 14.4 0.0 0.031 13.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|119719704|ref|YP_920199.1| - 0.023 14.4 0.0 0.053 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119719704|ref|YP_920199.1| - 0.044 14.1 0.0 0.097 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|119719704|ref|YP_920199.1| - 0.075 11.9 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_16 PF13191.6 gi|119719704|ref|YP_920199.1| - 0.13 12.6 0.1 0.23 11.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|119719704|ref|YP_920199.1| - 0.18 11.3 0.0 0.36 10.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|119719704|ref|YP_920199.1| - 0.18 11.0 0.1 0.23 10.7 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Glutaredoxin PF00462.24 gi|119719705|ref|YP_920200.1| - 0.0023 18.1 0.1 0.0053 16.9 0.1 1.6 1 0 0 1 1 1 1 Glutaredoxin CarboxypepD_reg PF13620.6 gi|119719705|ref|YP_920200.1| - 0.0032 17.7 4.6 0.0032 17.7 0.6 2.9 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|119719705|ref|YP_920200.1| - 0.016 15.2 0.6 0.065 13.2 0.3 2.1 2 0 0 2 2 2 0 CarboxypepD_reg-like domain PEGA PF08308.11 gi|119719705|ref|YP_920200.1| - 0.02 14.7 0.8 0.053 13.4 0.2 2.0 2 0 0 2 2 2 0 PEGA domain DUF521 PF04412.13 gi|119719706|ref|YP_920201.1| - 3.8e-131 437.5 0.0 4.3e-131 437.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Cas_Cas1 PF01867.16 gi|119719706|ref|YP_920201.1| - 0.11 11.7 0.0 0.29 10.2 0.0 1.6 2 0 0 2 2 2 0 CRISPR associated protein Cas1 DUF126 PF01989.16 gi|119719707|ref|YP_920202.1| - 3.5e-32 110.0 0.2 4.3e-32 109.7 0.2 1.1 1 0 0 1 1 1 1 Aconitase X swivel domain UDG PF03167.19 gi|119719708|ref|YP_920203.1| - 4.4e-44 150.2 0.0 5.7e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Replic_Relax PF13814.6 gi|119719710|ref|YP_920205.1| - 0.03 14.4 0.1 0.034 14.2 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation Baculo_PEP_C PF04513.12 gi|119719711|ref|YP_920206.1| - 2.2e-08 34.2 14.3 3.4e-05 23.9 4.8 2.9 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1640 PF07798.11 gi|119719711|ref|YP_920206.1| - 6e-05 23.2 2.6 6e-05 23.2 2.6 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1640) DUF1664 PF07889.12 gi|119719711|ref|YP_920206.1| - 0.00011 22.2 7.7 0.0091 16.0 4.1 3.4 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|119719711|ref|YP_920206.1| - 0.0002 20.4 2.7 0.0002 20.4 2.7 1.9 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 FlaC_arch PF05377.11 gi|119719711|ref|YP_920206.1| - 0.00056 20.3 16.6 0.72 10.3 0.2 4.8 3 2 2 5 5 5 2 Flagella accessory protein C (FlaC) GM_CSF PF01109.17 gi|119719711|ref|YP_920206.1| - 0.0013 18.9 0.8 0.0044 17.2 0.3 1.9 1 1 1 2 2 2 1 Granulocyte-macrophage colony-stimulating factor CLZ PF16526.5 gi|119719711|ref|YP_920206.1| - 0.0013 19.0 10.7 0.19 12.1 0.1 4.0 2 2 2 4 4 4 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels SlyX PF04102.12 gi|119719711|ref|YP_920206.1| - 0.0015 19.1 13.9 0.24 12.0 0.1 4.0 1 1 3 4 4 4 2 SlyX Prefoldin PF02996.17 gi|119719711|ref|YP_920206.1| - 0.0016 18.4 8.7 3 7.8 0.1 4.0 2 2 2 4 4 4 0 Prefoldin subunit DUF3584 PF12128.8 gi|119719711|ref|YP_920206.1| - 0.0017 16.0 8.4 0.0022 15.6 8.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|119719711|ref|YP_920206.1| - 0.0026 16.5 6.4 0.38 9.3 0.1 2.0 1 1 1 2 2 2 2 AAA domain NPV_P10 PF05531.12 gi|119719711|ref|YP_920206.1| - 0.0038 17.6 12.5 1.3 9.5 0.1 4.1 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|119719711|ref|YP_920206.1| - 0.0039 16.1 15.5 0.27 10.1 4.3 2.8 1 1 2 3 3 3 2 Spc7 kinetochore protein WXG100 PF06013.12 gi|119719711|ref|YP_920206.1| - 0.0051 17.0 5.3 1.5 9.1 0.4 3.7 2 2 2 4 4 4 1 Proteins of 100 residues with WXG Jnk-SapK_ap_N PF09744.9 gi|119719711|ref|YP_920206.1| - 0.0051 17.0 14.4 0.013 15.7 7.7 2.1 1 1 1 2 2 2 1 JNK_SAPK-associated protein-1 Snapin_Pallidin PF14712.6 gi|119719711|ref|YP_920206.1| - 0.0052 17.2 15.5 0.79 10.2 5.5 3.5 1 1 1 3 3 3 1 Snapin/Pallidin Filament PF00038.21 gi|119719711|ref|YP_920206.1| - 0.0072 16.0 8.9 0.57 9.7 0.1 2.2 1 1 1 2 2 2 2 Intermediate filament protein ApoLp-III PF07464.11 gi|119719711|ref|YP_920206.1| - 0.0079 16.3 1.8 0.0079 16.3 1.8 2.2 1 1 1 2 2 2 1 Apolipophorin-III precursor (apoLp-III) GAS PF13851.6 gi|119719711|ref|YP_920206.1| - 0.0085 15.5 16.1 0.14 11.5 9.7 2.1 1 1 2 3 3 3 3 Growth-arrest specific micro-tubule binding Surfac_D-trimer PF09006.11 gi|119719711|ref|YP_920206.1| - 0.01 15.7 1.2 4 7.4 0.0 4.1 3 1 0 3 3 3 0 Lung surfactant protein D coiled-coil trimerisation FH2 PF02181.23 gi|119719711|ref|YP_920206.1| - 0.01 15.0 11.3 0.024 13.8 1.0 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain CCDC-167 PF15188.6 gi|119719711|ref|YP_920206.1| - 0.011 16.0 9.2 0.042 14.2 0.6 3.3 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 COG2 PF06148.11 gi|119719711|ref|YP_920206.1| - 0.018 15.1 13.8 0.03 14.4 3.5 3.1 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4635 PF15466.6 gi|119719711|ref|YP_920206.1| - 0.02 14.4 8.0 0.13 11.8 0.1 3.4 3 2 0 4 4 3 0 Domain of unknown function (DUF4635) Tweety PF04906.13 gi|119719711|ref|YP_920206.1| - 0.022 13.4 6.8 1.1 7.8 0.2 2.3 1 1 1 2 2 2 0 Tweety HrpB7 PF09486.10 gi|119719711|ref|YP_920206.1| - 0.028 14.8 5.0 0.074 13.4 0.5 2.7 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) PIN_8 PF18476.1 gi|119719711|ref|YP_920206.1| - 0.03 14.2 0.5 0.03 14.2 0.5 1.8 1 1 1 2 2 2 0 PIN like domain YjcZ PF13990.6 gi|119719711|ref|YP_920206.1| - 0.034 13.5 9.2 0.023 14.1 4.4 2.4 1 1 1 2 2 2 0 YjcZ-like protein Fib_alpha PF08702.10 gi|119719711|ref|YP_920206.1| - 0.04 14.1 9.2 0.63 10.2 5.4 2.3 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Fer4_24 PF18109.1 gi|119719711|ref|YP_920206.1| - 0.04 14.2 0.2 0.04 14.2 0.2 3.0 4 0 0 4 4 1 0 Ferredoxin I 4Fe-4S cluster domain EspB_PE PF18625.1 gi|119719711|ref|YP_920206.1| - 0.041 14.4 2.3 0.055 13.9 0.2 2.2 2 2 0 2 2 1 0 ESX-1 secreted protein B PE domain Seryl_tRNA_N PF02403.22 gi|119719711|ref|YP_920206.1| - 0.052 13.8 10.1 0.57 10.4 0.5 3.2 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Tup_N PF08581.10 gi|119719711|ref|YP_920206.1| - 0.067 13.5 4.2 7.4 7.0 0.0 3.2 2 1 0 2 2 2 0 Tup N-terminal Cob_adeno_trans PF01923.18 gi|119719711|ref|YP_920206.1| - 0.075 13.2 2.5 0.48 10.6 2.5 2.1 1 1 0 1 1 1 0 Cobalamin adenosyltransferase T3SSipB PF16535.5 gi|119719711|ref|YP_920206.1| - 0.083 13.4 6.5 2.5 8.6 0.4 2.5 1 1 1 2 2 2 0 Type III cell invasion protein SipB DUF5082 PF16888.5 gi|119719711|ref|YP_920206.1| - 0.084 13.2 9.4 1.5 9.1 0.4 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF5082) LPP PF04728.13 gi|119719711|ref|YP_920206.1| - 0.091 13.2 8.0 9.3 6.7 0.1 4.5 3 2 3 6 6 4 0 Lipoprotein leucine-zipper DUF948 PF06103.11 gi|119719711|ref|YP_920206.1| - 0.093 13.0 11.3 29 5.0 0.9 3.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Cnn_1N PF07989.11 gi|119719711|ref|YP_920206.1| - 0.13 12.5 14.9 0.57 10.4 2.5 3.2 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 XhlA PF10779.9 gi|119719711|ref|YP_920206.1| - 0.14 12.3 4.2 25 5.2 0.1 3.5 2 1 1 3 3 3 0 Haemolysin XhlA DUF16 PF01519.16 gi|119719711|ref|YP_920206.1| - 0.17 12.4 9.1 1.2e+02 3.3 9.1 3.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 JIP_LZII PF16471.5 gi|119719711|ref|YP_920206.1| - 0.24 11.6 12.3 9.8 6.4 0.0 4.2 2 2 2 4 4 4 0 JNK-interacting protein leucine zipper II Img2 PF05046.14 gi|119719711|ref|YP_920206.1| - 0.26 11.6 2.5 6.1 7.2 0.1 3.1 1 1 2 3 3 2 0 Mitochondrial large subunit ribosomal protein (Img2) UPF0184 PF03670.13 gi|119719711|ref|YP_920206.1| - 0.32 11.4 0.1 0.32 11.4 0.1 3.1 2 1 2 4 4 3 0 Uncharacterised protein family (UPF0184) CEP63 PF17045.5 gi|119719711|ref|YP_920206.1| - 0.4 10.5 16.3 1.4 8.8 0.9 2.7 1 1 2 3 3 3 0 Centrosomal protein of 63 kDa Rab5-bind PF09311.11 gi|119719711|ref|YP_920206.1| - 0.41 10.0 15.8 0.29 10.5 8.7 2.1 1 1 1 2 2 2 0 Rabaptin-like protein Dor1 PF04124.12 gi|119719711|ref|YP_920206.1| - 0.42 9.3 11.3 0.078 11.6 6.3 1.9 1 1 1 2 2 2 0 Dor1-like family Prominin PF05478.11 gi|119719711|ref|YP_920206.1| - 0.43 8.5 10.1 0.12 10.3 0.9 2.0 1 1 1 2 2 2 0 Prominin Allexi_40kDa PF05549.11 gi|119719711|ref|YP_920206.1| - 0.46 10.0 8.9 0.28 10.7 4.4 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein SOAR PF16533.5 gi|119719711|ref|YP_920206.1| - 0.5 10.4 4.5 0.64 10.0 0.3 2.8 1 1 0 2 2 2 0 STIM1 Orai1-activating region APP_E2 PF12925.7 gi|119719711|ref|YP_920206.1| - 0.62 9.7 5.5 0.52 10.0 1.4 2.2 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein Bacillus_HBL PF05791.11 gi|119719711|ref|YP_920206.1| - 0.66 9.8 8.6 0.69 9.7 1.5 2.6 1 1 3 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Muted PF14942.6 gi|119719711|ref|YP_920206.1| - 0.7 10.2 14.6 4.1 7.7 4.7 3.0 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein POTRA_TamA_1 PF17243.2 gi|119719711|ref|YP_920206.1| - 0.7 10.0 5.4 4.7 7.4 0.3 3.2 2 1 1 3 3 3 0 POTRA domain TamA domain 1 Vps51 PF08700.11 gi|119719711|ref|YP_920206.1| - 0.71 10.0 8.0 4 7.6 0.1 3.7 4 1 0 4 4 3 0 Vps51/Vps67 DASH_Dad2 PF08654.10 gi|119719711|ref|YP_920206.1| - 0.74 10.3 10.7 18 5.8 0.1 3.9 1 1 3 4 4 4 0 DASH complex subunit Dad2 Exonuc_VII_L PF02601.15 gi|119719711|ref|YP_920206.1| - 0.76 9.3 10.4 2 7.9 10.4 1.7 1 1 0 1 1 1 0 Exonuclease VII, large subunit HisKA_3 PF07730.13 gi|119719711|ref|YP_920206.1| - 0.84 10.2 6.2 6.6 7.3 0.1 3.4 1 1 2 3 3 3 0 Histidine kinase ACCA PF03255.14 gi|119719711|ref|YP_920206.1| - 0.98 9.3 6.3 6.4 6.6 0.4 2.6 1 1 1 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF883 PF05957.13 gi|119719711|ref|YP_920206.1| - 1.1 10.0 5.0 2.9 8.6 0.1 2.8 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) GrpE PF01025.19 gi|119719711|ref|YP_920206.1| - 1.1 8.9 9.8 0.036 13.7 2.1 2.0 1 1 1 2 2 2 0 GrpE FUSC PF04632.12 gi|119719711|ref|YP_920206.1| - 1.1 7.7 4.5 0.47 8.9 0.2 1.9 1 1 1 2 2 2 0 Fusaric acid resistance protein family zf-ZPR1 PF03367.13 gi|119719711|ref|YP_920206.1| - 1.2 9.0 8.6 25 4.7 0.2 3.0 1 1 2 3 3 3 0 ZPR1 zinc-finger domain Ccdc124 PF06244.12 gi|119719711|ref|YP_920206.1| - 1.3 9.6 6.2 6 7.4 6.2 2.0 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 124 /Oxs1 DUF2730 PF10805.8 gi|119719711|ref|YP_920206.1| - 1.3 9.1 13.3 4 7.6 2.2 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF2730) TMPIT PF07851.13 gi|119719711|ref|YP_920206.1| - 1.6 7.9 7.9 3.5 6.8 0.4 2.1 1 1 1 2 2 2 0 TMPIT-like protein CHDCT2 PF08074.11 gi|119719711|ref|YP_920206.1| - 1.8 8.7 6.1 0.64 10.2 1.1 2.2 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain CK2S PF15011.6 gi|119719711|ref|YP_920206.1| - 1.9 8.4 15.7 0.38 10.6 3.1 2.9 1 1 1 3 3 3 0 Casein Kinase 2 substrate IZUMO PF15005.6 gi|119719711|ref|YP_920206.1| - 2.7 8.5 7.6 11 6.6 2.0 2.6 1 1 1 2 2 2 0 Izumo sperm-egg fusion, Ig domain-associated Fmp27_WPPW PF10359.9 gi|119719711|ref|YP_920206.1| - 2.8 6.7 9.8 1.4 7.7 0.8 2.1 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF4200 PF13863.6 gi|119719711|ref|YP_920206.1| - 2.9 8.3 13.1 0.77 10.2 2.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) DUF489 PF04356.12 gi|119719711|ref|YP_920206.1| - 4 7.4 10.0 5.5 7.0 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) Rootletin PF15035.6 gi|119719711|ref|YP_920206.1| - 4.3 7.3 14.6 0.54 10.3 2.2 2.7 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion PRKG1_interact PF15898.5 gi|119719711|ref|YP_920206.1| - 5.1 8.1 14.2 27 5.7 0.9 3.4 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain YabA PF06156.13 gi|119719711|ref|YP_920206.1| - 6.4 7.5 14.8 4 8.1 0.5 3.1 1 1 2 3 3 3 0 Initiation control protein YabA Rx_N PF18052.1 gi|119719711|ref|YP_920206.1| - 7.2 7.0 11.6 7.7 6.9 1.7 3.6 1 1 3 4 4 4 0 Rx N-terminal domain DUF5595 PF18077.1 gi|119719711|ref|YP_920206.1| - 8.1 6.6 7.9 0.74 9.9 0.3 3.1 4 0 0 4 4 1 0 Domain of unknown function (DUF5595) HAUS-augmin3 PF14932.6 gi|119719712|ref|YP_920207.1| - 0.047 13.3 0.7 0.054 13.1 0.7 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 V-SNARE PF05008.15 gi|119719712|ref|YP_920207.1| - 0.085 13.2 1.9 0.89 10.0 0.1 1.9 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus T2SSF PF00482.23 gi|119719714|ref|YP_920209.1| - 2.5e-13 50.1 3.3 2.5e-13 50.1 3.3 2.2 2 1 0 2 2 2 1 Type II secretion system (T2SS), protein F Spore_III_AB PF09548.10 gi|119719714|ref|YP_920209.1| - 0.082 13.0 0.0 0.19 11.9 0.0 1.6 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) TackOD1 PF18551.1 gi|119719716|ref|YP_920211.1| - 2.8e-45 154.3 0.1 3.7e-45 153.9 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|119719716|ref|YP_920211.1| - 8.7e-05 22.6 17.8 0.85 9.8 0.0 5.2 3 2 2 5 5 5 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119719716|ref|YP_920211.1| - 9.5e-05 21.7 14.1 1.3 8.5 0.1 5.1 5 0 0 5 5 5 3 zinc-ribbon domain HypA PF01155.19 gi|119719716|ref|YP_920211.1| - 0.0001 22.3 9.6 0.12 12.4 0.1 3.6 2 2 1 3 3 3 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|119719716|ref|YP_920211.1| - 0.00016 21.6 5.7 0.03 14.3 1.6 2.5 2 0 0 2 2 2 2 zinc-ribbons DZR PF12773.7 gi|119719716|ref|YP_920211.1| - 0.00057 19.9 14.3 0.055 13.5 3.6 3.1 1 1 1 2 2 2 1 Double zinc ribbon DUF35_N PF12172.8 gi|119719716|ref|YP_920211.1| - 0.0061 16.4 3.6 0.0061 16.4 3.6 3.6 3 1 0 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FYVE PF01363.21 gi|119719716|ref|YP_920211.1| - 0.0096 16.0 0.1 0.0096 16.0 0.1 2.9 2 1 0 2 2 2 1 FYVE zinc finger Zn_Tnp_IS1 PF03811.13 gi|119719716|ref|YP_920211.1| - 0.024 14.4 8.8 1.9 8.3 2.4 3.6 3 1 0 3 3 3 0 InsA N-terminal domain zinc_ribbon_4 PF13717.6 gi|119719716|ref|YP_920211.1| - 0.025 14.5 14.3 2.7 8.0 0.5 5.6 5 0 0 5 5 5 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|119719716|ref|YP_920211.1| - 0.026 14.4 14.7 0.092 12.6 0.1 4.2 3 1 1 4 4 4 0 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.19 gi|119719716|ref|YP_920211.1| - 0.041 14.0 9.8 0.1 12.8 1.6 2.7 2 0 0 2 2 2 0 Ribosomal protein L37e Rep_fac-A_C PF08646.10 gi|119719716|ref|YP_920211.1| - 0.058 13.1 1.9 2.7 7.7 1.9 2.3 1 1 0 1 1 1 0 Replication factor-A C terminal domain C1_1 PF00130.22 gi|119719716|ref|YP_920211.1| - 0.058 13.3 8.1 0.94 9.4 0.3 3.1 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.6 gi|119719716|ref|YP_920211.1| - 0.09 12.7 10.9 0.85 9.6 0.1 4.1 3 2 1 4 4 4 0 Prokaryotic RING finger family 1 DUF3797 PF12677.7 gi|119719716|ref|YP_920211.1| - 0.18 11.7 10.2 0.59 10.1 0.2 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) Ribosomal_L32p PF01783.23 gi|119719716|ref|YP_920211.1| - 0.4 11.0 0.1 0.4 11.0 0.1 3.3 2 1 0 3 3 3 0 Ribosomal L32p protein family VATC PF18716.1 gi|119719716|ref|YP_920211.1| - 1 9.2 4.9 8.8 6.3 0.2 3.0 3 0 0 3 3 3 0 Vms1-associating treble clef domain TF_Zn_Ribbon PF08271.12 gi|119719716|ref|YP_920211.1| - 1.3 8.6 18.1 0.61 9.7 0.2 4.5 3 1 1 4 4 4 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|119719716|ref|YP_920211.1| - 1.4 9.0 12.5 1.6 8.8 1.0 4.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain ADK_lid PF05191.14 gi|119719716|ref|YP_920211.1| - 1.5 8.9 11.7 4.6 7.3 0.5 4.2 4 0 0 4 4 4 0 Adenylate kinase, active site lid Elf1 PF05129.13 gi|119719716|ref|YP_920211.1| - 1.9 8.6 9.1 0.23 11.5 0.6 3.2 2 2 1 3 3 3 0 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.6 gi|119719716|ref|YP_920211.1| - 2 9.5 14.7 40 5.4 0.4 5.1 5 0 0 5 5 5 0 C2H2-type zinc finger Cys_rich_KTR PF14205.6 gi|119719716|ref|YP_920211.1| - 2.3 8.1 8.1 6.7 6.6 0.2 3.1 3 0 0 3 3 3 0 Cysteine-rich KTR zf-C4_Topoisom PF01396.19 gi|119719716|ref|YP_920211.1| - 3.2 7.6 12.0 4.3 7.2 0.5 3.9 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf_C2H2_10 PF18414.1 gi|119719716|ref|YP_920211.1| - 4.2 7.0 9.1 40 3.9 0.9 3.5 3 0 0 3 3 3 0 C2H2 type zinc-finger zf-RING_7 PF02591.15 gi|119719716|ref|YP_920211.1| - 4.5 7.5 0.0 4.5 7.5 0.0 4.1 4 0 0 4 4 3 0 C4-type zinc ribbon domain IBR PF01485.21 gi|119719716|ref|YP_920211.1| - 6.2 7.1 13.1 2.7e+03 -1.3 13.1 3.3 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zf-C2H2_11 PF16622.5 gi|119719716|ref|YP_920211.1| - 7.8 6.4 12.2 0.95 9.3 0.9 3.5 2 1 1 3 3 3 0 zinc-finger C2H2-type Ribosomal_L37ae PF01780.19 gi|119719716|ref|YP_920211.1| - 9.4 6.4 11.1 13 6.0 0.1 4.1 1 1 3 4 4 4 0 Ribosomal L37ae protein family T2SSE PF00437.20 gi|119719717|ref|YP_920212.1| - 1.1e-52 178.8 0.0 1.7e-52 178.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|119719717|ref|YP_920212.1| - 0.062 13.8 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|119719717|ref|YP_920212.1| - 0.11 12.9 0.0 0.26 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|119719717|ref|YP_920212.1| - 0.14 11.9 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Met_10 PF02475.16 gi|119719718|ref|YP_920213.1| - 1.5e-61 207.6 0.0 1.9e-61 207.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|119719718|ref|YP_920213.1| - 2.5e-06 26.9 0.0 3.5e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|119719718|ref|YP_920213.1| - 2.1e-05 24.2 0.0 3.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|119719718|ref|YP_920213.1| - 0.00052 19.6 0.0 0.0013 18.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|119719718|ref|YP_920213.1| - 0.00055 20.6 0.0 0.0066 17.1 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|119719718|ref|YP_920213.1| - 0.0024 17.3 0.0 0.0035 16.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PRMT5 PF05185.16 gi|119719718|ref|YP_920213.1| - 0.0032 17.3 0.2 0.0071 16.2 0.0 1.6 2 0 0 2 2 2 1 PRMT5 arginine-N-methyltransferase Methyltransf_11 PF08241.12 gi|119719718|ref|YP_920213.1| - 0.11 13.2 0.1 31 5.3 0.0 3.4 3 1 0 3 3 3 0 Methyltransferase domain Glyco_trans_1_4 PF13692.6 gi|119719718|ref|YP_920213.1| - 0.15 12.5 0.5 0.45 11.0 0.1 2.1 2 1 1 3 3 3 0 Glycosyl transferases group 1 PGM_PMM_I PF02878.16 gi|119719719|ref|YP_920214.1| - 3.1e-24 85.3 0.0 5.8e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|119719719|ref|YP_920214.1| - 2.2e-22 79.6 0.0 4.6e-22 78.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|119719719|ref|YP_920214.1| - 5.1e-16 58.9 0.0 9.1e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|119719719|ref|YP_920214.1| - 2.6e-12 46.8 0.8 7.9e-12 45.2 0.3 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Cu_amine_oxidN2 PF02727.16 gi|119719719|ref|YP_920214.1| - 0.012 15.8 0.0 0.12 12.7 0.0 2.2 2 0 0 2 2 2 0 Copper amine oxidase, N2 domain DUF2218 PF09981.9 gi|119719719|ref|YP_920214.1| - 0.015 15.7 0.0 0.11 13.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) AlkA_N PF06029.11 gi|119719719|ref|YP_920214.1| - 0.082 13.2 0.0 0.23 11.7 0.0 1.7 1 0 0 1 1 1 0 AlkA N-terminal domain EFG_II PF14492.6 gi|119719719|ref|YP_920214.1| - 0.095 12.8 0.1 0.24 11.5 0.1 1.6 1 0 0 1 1 1 0 Elongation Factor G, domain II ATP-synt_F PF01990.17 gi|119719720|ref|YP_920215.1| - 1.1e-05 25.6 0.0 1.5e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Apolipoprotein PF01442.18 gi|119719721|ref|YP_920216.1| - 0.0033 17.3 16.2 0.0043 16.9 16.2 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Exonuc_VII_L PF02601.15 gi|119719721|ref|YP_920216.1| - 0.013 15.1 7.2 0.015 14.9 7.2 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF883 PF05957.13 gi|119719721|ref|YP_920216.1| - 0.024 15.2 14.9 0.59 10.8 3.6 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) ThiS PF02597.20 gi|119719721|ref|YP_920216.1| - 0.024 15.2 2.7 0.024 15.2 2.7 2.2 1 1 1 2 2 2 0 ThiS family PDCD9 PF07147.12 gi|119719721|ref|YP_920216.1| - 0.025 13.8 3.6 0.028 13.7 3.6 1.0 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S30 (PDCD9) RRF PF01765.19 gi|119719721|ref|YP_920216.1| - 0.03 14.3 7.3 0.034 14.1 7.3 1.1 1 0 0 1 1 1 0 Ribosome recycling factor DUF3037 PF11236.8 gi|119719721|ref|YP_920216.1| - 0.045 14.2 3.1 0.06 13.8 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3037) V-ATPase_G PF03179.15 gi|119719721|ref|YP_920216.1| - 0.087 13.4 15.6 0.11 13.1 15.6 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit ApoLp-III PF07464.11 gi|119719721|ref|YP_920216.1| - 0.14 12.3 7.3 0.2 11.7 7.3 1.3 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DivIVA PF05103.13 gi|119719721|ref|YP_920216.1| - 0.18 11.9 16.8 0.059 13.5 9.9 2.1 1 1 1 2 2 2 0 DivIVA protein PqqD PF05402.12 gi|119719721|ref|YP_920216.1| - 0.21 11.9 3.5 0.37 11.1 0.2 2.2 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) V-ATPase_G_2 PF16999.5 gi|119719721|ref|YP_920216.1| - 0.22 11.9 21.3 0.36 11.3 21.3 1.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit CRISPR_Cse1 PF09481.10 gi|119719721|ref|YP_920216.1| - 0.25 10.4 4.9 0.31 10.1 4.9 1.0 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) HrpE PF06188.12 gi|119719721|ref|YP_920216.1| - 0.29 11.0 12.1 1.8 8.4 12.1 1.9 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E HisKA_3 PF07730.13 gi|119719721|ref|YP_920216.1| - 0.34 11.5 11.6 1.4 9.5 0.9 2.3 1 1 0 2 2 2 0 Histidine kinase Exo84_C PF16528.5 gi|119719721|ref|YP_920216.1| - 0.57 10.0 7.7 0.84 9.4 7.7 1.3 1 1 0 1 1 1 0 Exocyst component 84 C-terminal DUF4047 PF13256.6 gi|119719721|ref|YP_920216.1| - 0.65 10.2 6.1 0.83 9.9 6.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) RNase_J_C PF17770.1 gi|119719721|ref|YP_920216.1| - 0.95 10.6 5.4 8.6 7.5 0.8 2.3 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain Fib_alpha PF08702.10 gi|119719721|ref|YP_920216.1| - 0.98 9.6 5.6 1.3 9.2 5.6 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family GARP PF16731.5 gi|119719721|ref|YP_920216.1| - 1 9.0 16.9 1.2 8.8 7.7 2.1 1 1 1 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma 5_nucleotid PF05761.14 gi|119719721|ref|YP_920216.1| - 1.2 8.0 4.9 1.4 7.8 4.9 1.0 1 0 0 1 1 1 0 5' nucleotidase family Aldedh PF00171.22 gi|119719721|ref|YP_920216.1| - 1.6 7.2 5.7 1.8 7.0 5.7 1.0 1 0 0 1 1 1 0 Aldehyde dehydrogenase family AAA_11 PF13086.6 gi|119719721|ref|YP_920216.1| - 1.7 8.3 6.8 1.9 8.2 6.8 1.1 1 0 0 1 1 1 0 AAA domain VSG_B PF13206.6 gi|119719721|ref|YP_920216.1| - 3.3 6.9 8.1 5.1 6.3 8.1 1.3 1 1 0 1 1 1 0 Trypanosomal VSG domain YtxH PF12732.7 gi|119719721|ref|YP_920216.1| - 3.3 8.3 9.0 9.7 6.8 1.6 2.1 1 1 1 2 2 2 0 YtxH-like protein Mitofilin PF09731.9 gi|119719721|ref|YP_920216.1| - 4.1 6.1 20.4 5 5.8 20.4 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein AIF-MLS PF14962.6 gi|119719721|ref|YP_920216.1| - 6.7 6.6 8.3 4.4 7.2 0.6 2.0 1 1 1 2 2 2 0 Mitochondria Localisation Sequence AAA_23 PF13476.6 gi|119719721|ref|YP_920216.1| - 7.5 7.0 12.9 12 6.4 12.9 1.3 1 0 0 1 1 1 0 AAA domain DUF4230 PF14014.6 gi|119719721|ref|YP_920216.1| - 7.7 6.8 13.9 5.1 7.4 6.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4230) vATP-synt_E PF01991.18 gi|119719722|ref|YP_920217.1| - 1.3e-14 54.1 10.4 1.6e-14 53.8 10.4 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.12 gi|119719722|ref|YP_920217.1| - 3.3e-05 23.9 6.8 4.4e-05 23.4 6.8 1.1 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G_2 PF16999.5 gi|119719722|ref|YP_920217.1| - 0.00063 20.1 22.9 0.00088 19.7 20.1 2.4 2 1 0 2 2 2 1 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.8 gi|119719722|ref|YP_920217.1| - 0.0034 16.8 13.9 0.006 16.0 13.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) DivIVA PF05103.13 gi|119719722|ref|YP_920217.1| - 0.0034 17.5 8.2 0.0034 17.5 8.2 1.8 2 0 0 2 2 2 1 DivIVA protein DUF445 PF04286.12 gi|119719722|ref|YP_920217.1| - 0.0063 16.4 2.2 0.0073 16.1 2.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF445) Phage_min_cap2 PF06152.11 gi|119719722|ref|YP_920217.1| - 0.012 14.5 1.6 0.019 13.9 1.6 1.3 1 0 0 1 1 1 0 Phage minor capsid protein 2 dCache_1 PF02743.18 gi|119719722|ref|YP_920217.1| - 0.013 15.3 0.4 0.088 12.6 0.4 1.9 1 1 0 1 1 1 0 Cache domain CaM_binding PF07839.11 gi|119719722|ref|YP_920217.1| - 0.016 16.0 5.8 0.016 16.0 5.8 2.4 2 0 0 2 2 2 0 Plant calmodulin-binding domain TcdA_TcdB PF12919.7 gi|119719722|ref|YP_920217.1| - 0.047 13.0 1.7 0.062 12.6 1.7 1.1 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain RHD3 PF05879.12 gi|119719722|ref|YP_920217.1| - 0.051 11.7 4.6 0.066 11.4 4.6 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) DUF3095 PF11294.8 gi|119719722|ref|YP_920217.1| - 0.22 10.6 2.4 0.32 10.0 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) FliG_N PF14842.6 gi|119719722|ref|YP_920217.1| - 0.22 12.1 8.5 10 6.7 7.6 2.5 1 1 1 2 2 2 0 FliG N-terminal domain CFAP91 PF14738.6 gi|119719722|ref|YP_920217.1| - 5.4 7.0 17.0 4.1 7.5 1.9 1.6 1 1 1 2 2 2 0 Cilia- and flagella-associated protein 91 TetR_C_24 PF17932.1 gi|119719722|ref|YP_920217.1| - 6.8 7.0 9.8 5.6 7.3 3.3 2.5 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ATP-synt_F PF01990.17 gi|119719723|ref|YP_920218.1| - 0.0019 18.5 0.1 0.0022 18.3 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF2122 PF09895.9 gi|119719723|ref|YP_920218.1| - 0.022 15.1 0.0 0.025 15.0 0.0 1.1 1 0 0 1 1 1 0 RecB-family nuclease (DUF2122) Response_reg PF00072.24 gi|119719723|ref|YP_920218.1| - 0.051 13.8 0.0 0.066 13.4 0.0 1.2 1 0 0 1 1 1 0 Response regulator receiver domain Trm112p PF03966.16 gi|119719724|ref|YP_920219.1| - 1.7e-14 54.1 0.5 2.4e-14 53.6 0.5 1.2 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|119719724|ref|YP_920219.1| - 0.032 14.4 3.2 0.28 11.4 3.2 2.3 1 1 0 1 1 1 0 C4-type zinc ribbon domain tRNA-synt_1c PF00749.21 gi|119719725|ref|YP_920220.1| - 1.1e-77 261.0 0.0 1.4e-77 260.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|119719725|ref|YP_920220.1| - 1.1e-22 80.8 0.0 1.9e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_2b PF00587.25 gi|119719726|ref|YP_920221.1| - 2.6e-32 112.3 0.0 7.1e-32 110.8 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|119719726|ref|YP_920221.1| - 5.8e-21 74.4 1.2 1.1e-20 73.6 0.4 2.0 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|119719726|ref|YP_920221.1| - 4.8e-13 49.1 0.3 1.1e-12 48.0 0.3 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Acetyltransf_1 PF00583.25 gi|119719727|ref|YP_920222.1| - 1.5e-20 73.6 0.3 2e-20 73.2 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|119719727|ref|YP_920222.1| - 1.5e-17 63.7 0.0 1.6e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|119719727|ref|YP_920222.1| - 6.7e-15 55.3 0.5 1.1e-14 54.6 0.2 1.5 2 0 0 2 2 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119719727|ref|YP_920222.1| - 3.5e-09 36.5 0.1 5.5e-09 35.9 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|119719727|ref|YP_920222.1| - 1e-06 29.0 0.1 1.4e-06 28.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|119719727|ref|YP_920222.1| - 2.9e-06 27.4 0.0 4.3e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|119719727|ref|YP_920222.1| - 4.4e-06 26.7 0.0 7.4e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|119719727|ref|YP_920222.1| - 6.5e-05 23.6 0.0 7.4e-05 23.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|119719727|ref|YP_920222.1| - 0.00021 21.0 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|119719727|ref|YP_920222.1| - 0.00054 19.6 0.0 0.00068 19.3 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_6 PF13480.7 gi|119719727|ref|YP_920222.1| - 0.00054 20.1 0.0 0.0008 19.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|119719727|ref|YP_920222.1| - 0.0017 18.1 0.1 0.0021 17.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_15 PF17013.5 gi|119719727|ref|YP_920222.1| - 0.022 14.2 0.0 0.07 12.6 0.0 1.7 1 1 0 1 1 1 0 Putative acetyl-transferase C_LFY_FLO PF17538.2 gi|119719727|ref|YP_920222.1| - 0.041 13.4 0.7 0.19 11.2 0.5 1.9 1 1 1 2 2 2 0 DNA Binding Domain (C-terminal) Leafy/Floricaula IF3_N PF05198.16 gi|119719727|ref|YP_920222.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain Nudix_hydro PF18290.1 gi|119719727|ref|YP_920222.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Nudix hydrolase domain Lactamase_B_2 PF12706.7 gi|119719728|ref|YP_920223.1| - 1.2e-17 64.1 0.2 1.6e-17 63.7 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119719728|ref|YP_920223.1| - 7.4e-08 32.6 1.0 1e-07 32.2 1.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|119719728|ref|YP_920223.1| - 0.052 13.4 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain AP_endonuc_2 PF01261.24 gi|119719729|ref|YP_920224.1| - 5.2e-27 94.6 0.1 6.9e-27 94.3 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|119719729|ref|YP_920224.1| - 0.0045 16.7 0.2 1.3 8.8 0.0 3.5 4 0 0 4 4 4 1 AP endonuclease family 2 C terminus ADH_N PF08240.12 gi|119719730|ref|YP_920225.1| - 1.1e-29 102.5 0.2 2.5e-29 101.3 0.1 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|119719730|ref|YP_920225.1| - 1.2e-21 77.0 0.2 1.8e-21 76.4 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|119719730|ref|YP_920225.1| - 6.3e-10 38.9 0.1 3.6e-09 36.4 0.1 2.1 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|119719730|ref|YP_920225.1| - 2.7e-05 23.6 0.3 4e-05 23.0 0.3 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|119719730|ref|YP_920225.1| - 0.00022 22.3 0.0 0.00048 21.2 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|119719730|ref|YP_920225.1| - 0.0042 16.5 0.3 0.0099 15.2 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Creatininase PF02633.14 gi|119719731|ref|YP_920226.1| - 6.2e-49 166.7 0.0 7.5e-49 166.4 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase PAC2 PF09754.9 gi|119719731|ref|YP_920226.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 PAC2 family 2-Hacid_dh_C PF02826.19 gi|119719732|ref|YP_920227.1| - 1e-68 230.2 0.0 1.4e-68 229.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|119719732|ref|YP_920227.1| - 2.9e-37 127.3 0.0 3.4e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|119719732|ref|YP_920227.1| - 1.8e-05 24.9 0.0 3.3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|119719732|ref|YP_920227.1| - 0.0014 18.7 0.0 0.0031 17.6 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|119719732|ref|YP_920227.1| - 0.0015 18.2 0.0 0.0095 15.5 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|119719732|ref|YP_920227.1| - 0.0054 16.8 0.0 0.0096 16.0 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.21 gi|119719732|ref|YP_920227.1| - 0.035 13.5 0.4 0.34 10.2 0.4 2.2 1 1 0 1 1 1 0 ThiF family Mur_ligase PF01225.25 gi|119719732|ref|YP_920227.1| - 0.15 12.4 0.0 0.36 11.2 0.0 1.7 1 0 0 1 1 1 0 Mur ligase family, catalytic domain MMR_HSR1 PF01926.23 gi|119719733|ref|YP_920228.1| - 7.5e-17 61.5 0.0 8e-13 48.5 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|119719733|ref|YP_920228.1| - 8.3e-11 41.7 0.0 1.1e-05 25.0 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|119719733|ref|YP_920228.1| - 2.5e-07 30.7 0.0 7.9e-07 29.1 0.0 1.8 1 1 0 1 1 1 1 RsgA GTPase GTP_EFTU PF00009.27 gi|119719733|ref|YP_920228.1| - 1.8e-06 27.6 0.0 3.4e-05 23.5 0.0 2.7 2 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|119719733|ref|YP_920228.1| - 0.00013 22.1 0.9 0.047 13.8 0.3 2.8 2 1 1 3 3 3 1 Dynamin family cobW PF02492.19 gi|119719733|ref|YP_920228.1| - 0.0066 16.1 0.2 0.029 13.9 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 gi|119719733|ref|YP_920228.1| - 0.01 15.3 0.0 0.17 11.3 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|119719733|ref|YP_920228.1| - 0.067 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|119719733|ref|YP_920228.1| - 0.11 13.0 0.0 0.29 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|119719733|ref|YP_920228.1| - 0.21 10.5 0.4 0.63 9.0 0.1 2.0 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 gi|119719733|ref|YP_920228.1| - 0.23 11.2 0.0 0.85 9.4 0.0 1.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AGOG PF09171.10 gi|119719734|ref|YP_920229.1| - 6.2e-65 219.0 0.0 7.2e-65 218.8 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase PGM_PMM_I PF02878.16 gi|119719735|ref|YP_920230.1| - 2.7e-15 56.3 0.3 8.8e-15 54.6 0.1 1.9 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|119719735|ref|YP_920230.1| - 3e-07 31.0 0.0 7.7e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|119719735|ref|YP_920230.1| - 3.4e-05 24.0 0.0 0.0001 22.4 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NTP_transferase PF00483.23 gi|119719736|ref|YP_920231.1| - 3.3e-40 138.2 0.0 4.1e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|119719736|ref|YP_920231.1| - 2.2e-14 52.5 12.9 8.7e-06 25.3 4.0 3.9 1 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|119719736|ref|YP_920231.1| - 4.5e-12 46.6 0.0 6.2e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|119719736|ref|YP_920231.1| - 0.0018 17.3 0.1 0.048 12.6 0.0 2.1 2 0 0 2 2 2 1 L-fucokinase Hexapep_2 PF14602.6 gi|119719736|ref|YP_920231.1| - 0.38 10.6 13.2 5.1 6.9 0.8 4.8 2 2 3 5 5 4 0 Hexapeptide repeat of succinyl-transferase DUF92 PF01940.16 gi|119719738|ref|YP_920233.1| - 7.4e-58 195.7 11.9 8.8e-58 195.5 11.9 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 Mu-like_Com PF10122.9 gi|119719738|ref|YP_920233.1| - 0.2 11.2 0.0 0.34 10.4 0.0 1.3 1 0 0 1 1 1 0 Mu-like prophage protein Com NfeD PF01957.18 gi|119719739|ref|YP_920234.1| - 3.3e-15 56.2 2.0 3.3e-15 56.2 2.0 3.3 3 1 0 3 3 3 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|119719739|ref|YP_920234.1| - 0.00019 20.5 0.0 0.00033 19.8 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ASL_C2 PF14698.6 gi|119719739|ref|YP_920234.1| - 0.053 14.3 0.0 0.15 12.8 0.0 1.8 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal TMEM154 PF15102.6 gi|119719739|ref|YP_920234.1| - 0.56 10.1 2.9 1.3 8.9 1.3 2.1 2 0 0 2 2 2 0 TMEM154 protein family Band_7 PF01145.25 gi|119719741|ref|YP_920236.1| - 6.8e-33 114.2 6.6 6.8e-33 114.2 6.6 1.6 1 1 1 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|119719741|ref|YP_920236.1| - 0.0016 18.2 0.2 0.0041 16.9 0.1 1.9 2 0 0 2 2 2 1 SPFH domain-Band 7 family Bactofilin PF04519.13 gi|119719742|ref|YP_920237.1| - 1.3e-15 57.5 13.4 2.2e-09 37.5 4.0 3.4 2 1 1 3 3 3 3 Polymer-forming cytoskeletal Pentapeptide_3 PF13576.6 gi|119719742|ref|YP_920237.1| - 0.0054 16.9 0.8 0.059 13.5 1.0 2.5 2 1 0 2 2 2 1 Pentapeptide repeats (9 copies) DUF3672 PF12421.8 gi|119719742|ref|YP_920237.1| - 0.021 14.7 2.4 1.3 9.0 0.0 3.0 2 1 1 3 3 3 0 Fibronectin type III protein Phage_spike PF18715.1 gi|119719742|ref|YP_920237.1| - 0.021 14.9 0.3 14 5.8 0.0 3.4 2 1 1 3 3 3 0 Phage spike trimer Histone_H2A_C PF16211.5 gi|119719742|ref|YP_920237.1| - 3.2 7.6 8.1 14 5.5 0.2 2.9 3 0 0 3 3 3 0 C-terminus of histone H2A Ribosomal_S13_N PF08069.12 gi|119719743|ref|YP_920238.1| - 0.07 13.2 0.1 0.071 13.2 0.1 1.2 1 1 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain Reticulon PF02453.17 gi|119719743|ref|YP_920238.1| - 0.15 12.0 0.0 0.15 12.0 0.0 1.0 1 0 0 1 1 1 0 Reticulon Histone_HNS PF00816.21 gi|119719743|ref|YP_920238.1| - 0.18 12.6 0.7 0.41 11.5 0.3 1.7 1 1 1 2 2 2 0 H-NS histone family G0-G1_switch_2 PF15103.6 gi|119719744|ref|YP_920239.1| - 0.044 14.2 1.2 0.049 14.1 0.0 1.7 2 0 0 2 2 2 0 G0/G1 switch protein 2 Reo_sigmaC_M PF17750.1 gi|119719744|ref|YP_920239.1| - 0.11 12.4 0.1 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein triple beta spiral HTH_5 PF01022.20 gi|119719745|ref|YP_920240.1| - 2.4e-11 43.3 0.2 5.6e-11 42.1 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119719745|ref|YP_920240.1| - 1.4e-06 28.2 0.0 2.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|119719745|ref|YP_920240.1| - 6.3e-05 22.8 0.2 0.00012 21.9 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|119719745|ref|YP_920240.1| - 0.00068 19.5 0.7 0.0048 16.8 0.7 2.0 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|119719745|ref|YP_920240.1| - 0.018 14.6 0.0 0.053 13.1 0.0 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|119719745|ref|YP_920240.1| - 0.021 15.0 0.1 0.032 14.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|119719745|ref|YP_920240.1| - 0.037 14.4 0.1 0.81 10.1 0.0 2.2 2 1 0 2 2 2 0 Transcriptional regulator DeoC PF01791.9 gi|119719746|ref|YP_920241.1| - 2.7e-32 112.3 0.1 3.5e-32 111.9 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|119719746|ref|YP_920241.1| - 8.6e-06 25.3 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.24 gi|119719746|ref|YP_920241.1| - 0.002 17.7 0.2 0.0034 17.0 0.2 1.4 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|119719746|ref|YP_920241.1| - 0.032 13.6 0.4 5.9 6.2 0.0 2.3 2 0 0 2 2 2 0 Thiamine monophosphate synthase Pilus_CpaD PF09476.10 gi|119719746|ref|YP_920241.1| - 0.094 12.4 0.1 0.18 11.5 0.1 1.5 1 1 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Cyclophil_like PF04126.13 gi|119719747|ref|YP_920242.1| - 3.4e-47 159.1 0.0 3.8e-47 159.0 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|119719747|ref|YP_920242.1| - 0.0003 20.7 0.0 0.00033 20.6 0.0 1.2 1 0 0 1 1 1 1 Cyclophilin-like family AP_endonuc_2 PF01261.24 gi|119719748|ref|YP_920243.1| - 1.5e-13 50.7 0.0 3.3e-13 49.6 0.0 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF4862 PF16154.5 gi|119719748|ref|YP_920243.1| - 0.0013 18.2 0.0 0.013 14.9 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4862) Mem_trans PF03547.18 gi|119719749|ref|YP_920244.1| - 6.1e-07 28.2 6.2 6.1e-07 28.2 6.2 2.0 2 0 0 2 2 2 2 Membrane transport protein Asparaginase_2 PF01112.18 gi|119719750|ref|YP_920245.1| - 2e-91 306.2 0.4 2.4e-91 306.0 0.4 1.0 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.24 gi|119719750|ref|YP_920245.1| - 0.068 12.8 0.1 0.13 11.9 0.0 1.5 2 0 0 2 2 2 0 Metallopeptidase family M24 Nitro_FeMo-Co PF02579.17 gi|119719750|ref|YP_920245.1| - 0.15 12.4 0.7 0.39 11.1 0.1 2.0 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor ELFV_dehydrog PF00208.21 gi|119719752|ref|YP_920247.1| - 2.3e-74 250.2 4.2 3e-74 249.8 4.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|119719752|ref|YP_920247.1| - 3.4e-55 185.5 0.0 8.3e-55 184.2 0.0 1.7 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|119719752|ref|YP_920247.1| - 9.1e-05 21.9 0.1 0.00016 21.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|119719752|ref|YP_920247.1| - 0.011 15.1 0.1 0.021 14.2 0.1 1.4 1 0 0 1 1 1 0 ThiF family NAD_binding_7 PF13241.6 gi|119719752|ref|YP_920247.1| - 0.013 16.0 0.2 0.028 14.9 0.2 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|119719752|ref|YP_920247.1| - 0.079 13.0 0.4 0.2 11.7 0.4 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|119719752|ref|YP_920247.1| - 0.08 13.2 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|119719752|ref|YP_920247.1| - 0.14 12.1 0.8 0.25 11.2 0.8 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|119719752|ref|YP_920247.1| - 0.14 12.2 0.9 0.29 11.2 0.5 1.6 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF2385 PF09539.10 gi|119719752|ref|YP_920247.1| - 0.16 12.5 0.2 0.31 11.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) Pyridox_ox_2 PF12900.7 gi|119719753|ref|YP_920248.1| - 0.039 14.0 0.1 0.33 10.9 0.0 2.1 1 1 1 2 2 2 0 Pyridoxamine 5'-phosphate oxidase DUF2208 PF09973.9 gi|119719755|ref|YP_920250.1| - 1.3e-70 237.6 6.6 1.5e-70 237.4 6.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Phage_holin_3_6 PF07332.11 gi|119719755|ref|YP_920250.1| - 0.0003 20.8 3.1 0.21 11.6 0.0 2.1 2 0 0 2 2 2 2 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|119719755|ref|YP_920250.1| - 0.00031 20.4 0.9 0.32 10.6 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4131) DUF5080 PF16883.5 gi|119719755|ref|YP_920250.1| - 0.087 12.9 9.4 0.17 12.0 1.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5080) DUF2975 PF11188.8 gi|119719755|ref|YP_920250.1| - 0.12 12.2 4.7 1 9.2 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Peptidase_M48_N PF16491.5 gi|119719755|ref|YP_920250.1| - 0.84 9.5 11.2 1.5 8.6 6.7 2.2 2 0 0 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices MNHE PF01899.16 gi|119719755|ref|YP_920250.1| - 1 9.1 5.1 0.26 11.1 0.2 2.2 2 1 1 3 3 3 0 Na+/H+ ion antiporter subunit YwiC PF14256.6 gi|119719755|ref|YP_920250.1| - 2 8.8 9.0 2.5 8.4 1.4 2.2 2 0 0 2 2 2 0 YwiC-like protein PIG-P PF08510.12 gi|119719755|ref|YP_920250.1| - 2.1 8.3 5.3 9.9 6.1 1.0 2.4 2 0 0 2 2 2 0 PIG-P DUF2838 PF10998.8 gi|119719755|ref|YP_920250.1| - 2.3 8.5 8.6 0.43 10.8 4.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2838) MARVEL PF01284.23 gi|119719755|ref|YP_920250.1| - 3 7.8 10.7 0.92 9.5 1.4 2.3 2 0 0 2 2 2 0 Membrane-associating domain DUF3043 PF11241.8 gi|119719755|ref|YP_920250.1| - 5.3 7.0 5.9 1.1 9.3 1.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3043) MTS PF05175.14 gi|119719756|ref|YP_920251.1| - 9.4e-08 31.8 0.0 1.3e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|119719756|ref|YP_920251.1| - 1.6e-05 25.5 0.0 4.9e-05 23.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719756|ref|YP_920251.1| - 2e-05 25.2 0.0 3.7e-05 24.4 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.13 gi|119719756|ref|YP_920251.1| - 5.1e-05 22.8 0.1 6.5e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|119719756|ref|YP_920251.1| - 0.00017 21.4 0.0 0.00019 21.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|119719756|ref|YP_920251.1| - 0.00036 20.3 0.0 0.0005 19.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|119719756|ref|YP_920251.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119719756|ref|YP_920251.1| - 0.031 14.1 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|119719756|ref|YP_920251.1| - 0.052 13.3 0.0 0.062 13.0 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|119719756|ref|YP_920251.1| - 0.072 13.8 0.0 0.14 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|119719756|ref|YP_920251.1| - 0.084 12.5 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA-synt_2 PF00152.20 gi|119719757|ref|YP_920252.1| - 1.5e-87 293.6 0.0 1.8e-87 293.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|119719757|ref|YP_920252.1| - 6.9e-12 45.2 0.1 1.3e-11 44.3 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain FeoA PF04023.14 gi|119719758|ref|YP_920253.1| - 5.5e-15 55.4 1.0 6.1e-15 55.2 1.0 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|119719759|ref|YP_920254.1| - 1.1e-56 190.7 0.1 1.7e-56 190.0 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|119719759|ref|YP_920254.1| - 8.4e-24 84.0 26.6 3.7e-16 59.4 7.2 3.4 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|119719759|ref|YP_920254.1| - 2.2e-20 72.8 0.0 4.1e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|119719759|ref|YP_920254.1| - 1.8e-11 43.5 1.1 1.8e-11 43.5 1.1 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|119719759|ref|YP_920254.1| - 3.3e-11 43.6 0.0 1.2e-10 41.7 0.0 1.9 2 0 0 2 2 2 1 FeoB cytosolic helical domain GTP_EFTU PF00009.27 gi|119719759|ref|YP_920254.1| - 1.7e-06 27.7 0.3 1.9e-05 24.3 0.3 2.2 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|119719759|ref|YP_920254.1| - 7e-05 22.2 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|119719759|ref|YP_920254.1| - 0.00015 21.7 0.2 0.34 10.8 0.2 2.3 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|119719759|ref|YP_920254.1| - 0.0082 16.2 0.1 3.4 7.7 0.0 2.2 2 0 0 2 2 2 2 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|119719759|ref|YP_920254.1| - 0.015 15.3 0.1 0.031 14.3 0.1 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|119719759|ref|YP_920254.1| - 0.094 12.1 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|119719759|ref|YP_920254.1| - 0.11 11.9 0.0 0.39 10.1 0.0 1.9 1 1 0 1 1 1 0 ADP-ribosylation factor family Radical_SAM PF04055.21 gi|119719760|ref|YP_920255.1| - 1.1e-15 58.4 0.0 2e-15 57.6 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119719760|ref|YP_920255.1| - 3.5e-10 40.3 0.0 5.8e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119719760|ref|YP_920255.1| - 1.9e-06 28.0 0.0 3.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain MFS_1 PF07690.16 gi|119719761|ref|YP_920256.1| - 2.2e-23 82.8 42.1 3.1e-13 49.4 15.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PhoU_div PF01865.16 gi|119719761|ref|YP_920256.1| - 2.1e-15 56.7 6.8 3.2e-15 56.0 6.8 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 Sugar_tr PF00083.24 gi|119719761|ref|YP_920256.1| - 0.015 14.2 18.8 0.032 13.1 2.9 3.4 2 1 1 3 3 3 0 Sugar (and other) transporter MFS_1_like PF12832.7 gi|119719761|ref|YP_920256.1| - 0.067 12.0 10.5 0.1 11.4 8.7 2.3 1 1 0 1 1 1 0 MFS_1 like family OATP PF03137.20 gi|119719761|ref|YP_920256.1| - 7.2 4.8 7.0 0.91 7.7 1.5 2.0 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Wyosine_form PF08608.12 gi|119719762|ref|YP_920257.1| - 1e-19 70.6 0.0 2.7e-19 69.3 0.0 1.8 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|119719762|ref|YP_920257.1| - 2.2e-14 54.2 1.0 2.8e-12 47.3 0.1 2.9 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119719762|ref|YP_920257.1| - 0.055 13.7 1.3 0.27 11.5 1.3 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119719762|ref|YP_920257.1| - 0.074 13.2 0.1 4.9 7.3 0.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain NucS PF01939.16 gi|119719763|ref|YP_920258.1| - 7.5e-55 185.8 0.3 9.2e-55 185.5 0.3 1.0 1 0 0 1 1 1 1 Endonuclease NucS Cas_Cas4 PF01930.17 gi|119719763|ref|YP_920258.1| - 0.00031 20.9 0.0 0.00046 20.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 HSDR_N PF04313.14 gi|119719763|ref|YP_920258.1| - 0.0035 17.3 0.0 0.0048 16.9 0.0 1.3 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|119719763|ref|YP_920258.1| - 0.0044 17.0 0.0 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) MazE_antitoxin PF04014.18 gi|119719763|ref|YP_920258.1| - 0.012 15.5 1.5 0.79 9.7 0.1 3.1 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin PDDEXK_9 PF08011.11 gi|119719763|ref|YP_920258.1| - 0.036 14.0 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily betaPIX_CC PF16523.5 gi|119719763|ref|YP_920258.1| - 0.049 13.5 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 betaPIX coiled coil Redoxin PF08534.10 gi|119719763|ref|YP_920258.1| - 0.17 11.6 0.3 2.7 7.7 0.0 2.3 2 1 0 2 2 2 0 Redoxin TPP_enzyme_C PF02775.21 gi|119719765|ref|YP_920260.1| - 3.5e-33 114.6 0.1 1.7e-32 112.3 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|119719765|ref|YP_920260.1| - 1.1e-18 67.1 0.1 1.9e-18 66.4 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|119719766|ref|YP_920261.1| - 1.7e-57 194.8 0.0 2.3e-57 194.4 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|119719766|ref|YP_920261.1| - 4.1e-32 111.6 0.0 8.8e-32 110.6 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|119719766|ref|YP_920261.1| - 4.9e-09 36.4 0.0 8.9e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|119719766|ref|YP_920261.1| - 7.5e-07 28.9 2.0 1.8e-06 27.7 1.1 1.9 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|119719766|ref|YP_920261.1| - 0.026 14.4 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain DUF123 PF01986.16 gi|119719767|ref|YP_920262.1| - 2.8e-24 85.4 0.0 3.6e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 QRPTase_C PF01729.19 gi|119719768|ref|YP_920263.1| - 1.4e-19 70.5 0.0 1.9e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|119719768|ref|YP_920263.1| - 0.00081 19.8 0.1 0.0064 16.9 0.0 2.1 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain Zn-ribbon_8 PF09723.10 gi|119719768|ref|YP_920263.1| - 0.0038 17.3 0.7 0.0072 16.4 0.7 1.4 1 0 0 1 1 1 1 Zinc ribbon domain NAPRTase_N PF17767.1 gi|119719768|ref|YP_920263.1| - 0.0096 16.3 0.0 1.5 9.2 0.0 2.3 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Ribul_P_3_epim PF00834.19 gi|119719768|ref|YP_920263.1| - 0.01 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_N PF02749.16 gi|119719768|ref|YP_920263.1| - 0.012 15.7 0.0 0.028 14.5 0.0 1.7 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase PF04095.16 gi|119719768|ref|YP_920263.1| - 0.014 15.0 0.0 0.03 14.0 0.0 1.4 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) family MCM_OB PF17207.3 gi|119719768|ref|YP_920263.1| - 0.11 12.3 0.1 1.7 8.5 0.2 2.5 3 0 0 3 3 3 0 MCM OB domain Desulfoferrod_N PF06397.12 gi|119719768|ref|YP_920263.1| - 0.26 10.9 2.1 0.47 10.1 2.1 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain HTH_20 PF12840.7 gi|119719769|ref|YP_920264.1| - 1.8e-10 40.7 0.2 2.9e-10 40.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|119719769|ref|YP_920264.1| - 2.1e-08 33.9 0.2 3.1e-08 33.4 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|119719769|ref|YP_920264.1| - 2.2e-07 30.3 0.2 3.2e-07 29.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|119719769|ref|YP_920264.1| - 3.5e-05 23.6 0.3 6.5e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|119719769|ref|YP_920264.1| - 8.3e-05 22.7 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|119719769|ref|YP_920264.1| - 0.00042 20.2 0.0 0.00066 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|119719769|ref|YP_920264.1| - 0.0041 17.2 1.0 0.007 16.5 0.2 1.7 2 0 0 2 2 2 1 DprA winged helix domain HTH_IclR PF09339.10 gi|119719769|ref|YP_920264.1| - 0.032 14.0 0.1 0.055 13.3 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|119719769|ref|YP_920264.1| - 0.059 13.2 0.2 0.14 12.0 0.2 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|119719769|ref|YP_920264.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.10 gi|119719769|ref|YP_920264.1| - 0.15 12.1 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator DEAD PF00270.29 gi|119719770|ref|YP_920265.1| - 4.1e-26 91.8 0.0 2.8e-25 89.1 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119719770|ref|YP_920265.1| - 3e-19 69.4 0.0 5.4e-17 62.1 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|119719770|ref|YP_920265.1| - 2.3e-14 53.9 0.1 5.8e-14 52.6 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|119719770|ref|YP_920265.1| - 5.9e-05 23.1 0.0 0.00011 22.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 gi|119719770|ref|YP_920265.1| - 0.0042 16.7 0.0 0.006 16.1 0.0 1.2 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|119719770|ref|YP_920265.1| - 0.0077 16.6 0.0 0.018 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119719770|ref|YP_920265.1| - 0.11 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|119719771|ref|YP_920266.1| - 1.3e-138 462.0 0.0 1.7e-138 461.6 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|119719771|ref|YP_920266.1| - 1e-23 83.2 0.1 6.9e-23 80.6 0.2 2.2 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|119719771|ref|YP_920266.1| - 1.3e-11 45.1 1.6 9.2e-09 35.8 0.0 3.1 3 1 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|119719771|ref|YP_920266.1| - 8.4e-08 32.1 0.4 3.7e-05 23.5 0.0 2.9 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|119719771|ref|YP_920266.1| - 4.8e-07 30.1 0.0 0.0094 16.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|119719771|ref|YP_920266.1| - 9.9e-06 26.0 0.3 0.00027 21.4 0.3 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|119719771|ref|YP_920266.1| - 2.5e-05 23.9 0.0 0.00028 20.5 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|119719771|ref|YP_920266.1| - 8.3e-05 22.1 0.5 0.00034 20.1 0.1 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|119719771|ref|YP_920266.1| - 0.00014 22.2 0.2 0.042 14.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|119719771|ref|YP_920266.1| - 0.00019 21.5 0.2 0.0029 17.6 0.0 2.7 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|119719771|ref|YP_920266.1| - 0.00029 21.4 0.0 0.0025 18.4 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|119719771|ref|YP_920266.1| - 0.00071 19.2 2.7 0.0042 16.7 0.4 2.7 2 1 0 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|119719771|ref|YP_920266.1| - 0.0014 18.8 0.1 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|119719771|ref|YP_920266.1| - 0.0026 17.5 0.1 0.0055 16.5 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|119719771|ref|YP_920266.1| - 0.0068 16.9 0.0 0.013 16.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter DnaB_C PF03796.15 gi|119719771|ref|YP_920266.1| - 0.011 15.0 0.0 0.03 13.7 0.0 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Sigma54_activat PF00158.26 gi|119719771|ref|YP_920266.1| - 0.012 15.3 0.0 0.12 12.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_33 PF13671.6 gi|119719771|ref|YP_920266.1| - 0.013 15.7 0.0 0.038 14.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119719771|ref|YP_920266.1| - 0.014 15.1 1.0 0.16 11.6 0.5 2.7 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|119719771|ref|YP_920266.1| - 0.03 13.6 0.2 0.079 12.2 0.1 1.7 2 0 0 2 2 1 0 Zeta toxin DUF2075 PF09848.9 gi|119719771|ref|YP_920266.1| - 0.033 13.4 0.0 0.094 11.9 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|119719771|ref|YP_920266.1| - 0.037 13.5 0.1 0.071 12.5 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.6 gi|119719771|ref|YP_920266.1| - 0.049 13.3 0.0 0.69 9.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|119719771|ref|YP_920266.1| - 0.05 13.4 0.0 0.09 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|119719771|ref|YP_920266.1| - 0.052 14.0 0.1 0.2 12.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|119719771|ref|YP_920266.1| - 0.054 12.8 0.1 0.14 11.5 0.1 1.7 1 0 0 1 1 1 0 KaiC RHH_5 PF07878.11 gi|119719771|ref|YP_920266.1| - 0.07 13.0 0.5 8.7 6.3 0.1 3.3 3 0 0 3 3 3 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 TsaE PF02367.17 gi|119719771|ref|YP_920266.1| - 0.093 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|119719771|ref|YP_920266.1| - 0.1 11.7 0.1 0.17 11.0 0.1 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_2 PF07724.14 gi|119719771|ref|YP_920266.1| - 0.11 12.6 0.0 4.4 7.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) TFIID-31kDa PF02291.15 gi|119719771|ref|YP_920266.1| - 0.12 12.5 0.0 4.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Transcription initiation factor IID, 31kD subunit IPT PF01745.16 gi|119719771|ref|YP_920266.1| - 0.13 11.7 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase DUF815 PF05673.13 gi|119719771|ref|YP_920266.1| - 0.13 11.4 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ResIII PF04851.15 gi|119719771|ref|YP_920266.1| - 0.14 12.1 0.1 0.74 9.8 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_14 PF13173.6 gi|119719771|ref|YP_920266.1| - 0.14 12.1 0.0 2.6 8.1 0.0 2.7 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.22 gi|119719771|ref|YP_920266.1| - 0.15 12.5 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|119719771|ref|YP_920266.1| - 0.17 11.8 0.0 0.43 10.5 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|119719771|ref|YP_920266.1| - 0.18 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Peptidase_S24 PF00717.23 gi|119719772|ref|YP_920267.1| - 6.3e-08 32.5 0.2 9.9e-08 31.8 0.2 1.3 1 0 0 1 1 1 1 Peptidase S24-like DUF2512 PF10710.9 gi|119719772|ref|YP_920267.1| - 0.21 11.2 0.1 0.21 11.2 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2512) Peptidase_M50 PF02163.22 gi|119719773|ref|YP_920268.1| - 1.8e-20 73.3 2.2 8.5e-20 71.1 2.2 1.9 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|119719773|ref|YP_920268.1| - 2.5e-11 43.7 0.0 6.6e-11 42.4 0.0 1.7 2 0 0 2 2 2 1 PDZ domain PDZ_6 PF17820.1 gi|119719773|ref|YP_920268.1| - 4e-09 36.2 0.0 1.2e-08 34.7 0.0 1.9 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|119719773|ref|YP_920268.1| - 2.5e-08 34.1 0.0 6.7e-07 29.6 0.0 2.7 3 0 0 3 3 3 1 PDZ domain PDZ_1 PF12812.7 gi|119719773|ref|YP_920268.1| - 0.005 16.8 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 PDZ-like domain Tricorn_PDZ PF14685.6 gi|119719773|ref|YP_920268.1| - 0.034 14.1 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain Hjc PF01870.18 gi|119719775|ref|YP_920270.1| - 7.8e-14 51.4 0.5 1.1e-13 51.0 0.5 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Motile_Sperm PF00635.26 gi|119719775|ref|YP_920270.1| - 0.017 14.9 0.4 0.047 13.5 0.2 1.8 2 0 0 2 2 2 0 MSP (Major sperm protein) domain HSDR_N PF04313.14 gi|119719775|ref|YP_920270.1| - 0.019 14.9 0.2 0.023 14.7 0.2 1.1 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) VRR_NUC PF08774.11 gi|119719775|ref|YP_920270.1| - 0.022 14.8 0.1 0.04 14.0 0.1 1.7 1 1 0 1 1 1 0 VRR-NUC domain DUF354 PF04007.12 gi|119719776|ref|YP_920271.1| - 1.7e-24 86.6 0.0 1.9e-24 86.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.19 gi|119719776|ref|YP_920271.1| - 0.018 13.9 0.0 0.032 13.1 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Zip PF02535.22 gi|119719777|ref|YP_920272.1| - 0.013 14.7 0.0 0.015 14.6 0.0 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter Chitin_bind_4 PF00379.23 gi|119719777|ref|YP_920272.1| - 0.14 12.7 0.1 0.26 11.8 0.1 1.4 1 0 0 1 1 1 0 Insect cuticle protein AsnC_trans_reg PF01037.21 gi|119719778|ref|YP_920273.1| - 5.2e-12 45.6 0.1 7.7e-12 45.0 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|119719778|ref|YP_920273.1| - 0.0031 17.4 0.0 0.005 16.8 0.0 1.4 1 0 0 1 1 1 1 GYD domain Presenilin PF01080.17 gi|119719779|ref|YP_920274.1| - 2.2e-14 53.0 18.5 1.9e-07 30.2 11.6 2.2 1 1 1 2 2 2 2 Presenilin AAA_22 PF13401.6 gi|119719780|ref|YP_920275.1| - 7.1e-11 42.5 0.0 2.6e-10 40.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119719780|ref|YP_920275.1| - 1.6e-05 25.4 0.3 7.3e-05 23.2 0.0 2.2 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|119719780|ref|YP_920275.1| - 2.8e-05 24.6 0.0 5.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|119719780|ref|YP_920275.1| - 5e-05 22.8 0.0 9.7e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein Cdc6_C PF09079.11 gi|119719780|ref|YP_920275.1| - 8.2e-05 22.5 0.0 0.00022 21.1 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_24 PF13479.6 gi|119719780|ref|YP_920275.1| - 0.002 17.9 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|119719780|ref|YP_920275.1| - 0.0039 17.2 0.0 0.017 15.2 0.0 1.7 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|119719780|ref|YP_920275.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|119719780|ref|YP_920275.1| - 0.073 12.5 0.0 0.27 10.6 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein DEAD PF00270.29 gi|119719780|ref|YP_920275.1| - 0.081 12.7 0.0 7.4 6.3 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|119719780|ref|YP_920275.1| - 0.097 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|119719780|ref|YP_920275.1| - 0.11 13.0 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_7 PF12775.7 gi|119719780|ref|YP_920275.1| - 0.16 11.5 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region PvlArgDC PF01862.16 gi|119719781|ref|YP_920276.1| - 3.5e-35 121.2 0.0 4e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DSHCT PF08148.12 gi|119719783|ref|YP_920278.1| - 0.0074 16.0 0.1 0.0082 15.8 0.1 1.0 1 0 0 1 1 1 1 DSHCT (NUC185) domain MTS PF05175.14 gi|119719784|ref|YP_920279.1| - 3.4e-18 65.8 0.0 1.3e-17 63.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|119719784|ref|YP_920279.1| - 7.9e-13 48.9 0.4 5.8e-12 46.1 0.4 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719784|ref|YP_920279.1| - 3.6e-10 40.4 0.1 1.7e-09 38.2 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119719784|ref|YP_920279.1| - 8.8e-09 35.3 0.0 1.1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|119719784|ref|YP_920279.1| - 1.7e-06 27.9 0.0 5.7e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|119719784|ref|YP_920279.1| - 0.00029 21.5 0.0 0.00056 20.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119719784|ref|YP_920279.1| - 0.00065 19.6 0.0 0.00096 19.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|119719784|ref|YP_920279.1| - 0.0012 18.3 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|119719784|ref|YP_920279.1| - 0.02 14.3 0.0 0.45 9.8 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family TPMT PF05724.11 gi|119719784|ref|YP_920279.1| - 0.053 13.2 0.1 0.089 12.4 0.1 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 gi|119719784|ref|YP_920279.1| - 0.11 11.8 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase FeS_assembly_P PF01883.19 gi|119719785|ref|YP_920280.1| - 2.3e-22 79.0 0.5 2.8e-22 78.7 0.5 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|119719785|ref|YP_920280.1| - 1.2e-06 28.6 0.4 2.1e-06 27.8 0.4 1.5 1 1 0 1 1 1 1 NifU-like domain ERCC4 PF02732.15 gi|119719786|ref|YP_920281.1| - 7.1e-17 62.0 0.0 1.1e-16 61.4 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|119719786|ref|YP_920281.1| - 2e-08 34.7 0.0 4.5e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|119719786|ref|YP_920281.1| - 2.8e-08 33.2 0.0 0.0093 15.8 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|119719786|ref|YP_920281.1| - 6.9e-05 23.0 0.0 0.057 13.7 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|119719786|ref|YP_920281.1| - 0.0038 17.5 0.1 2.1 8.8 0.0 2.9 3 0 0 3 3 3 1 IMS family HHH motif ACT_7 PF13840.6 gi|119719786|ref|YP_920281.1| - 0.028 14.2 0.1 0.17 11.7 0.0 2.3 3 0 0 3 3 3 0 ACT domain HHH_2 PF12826.7 gi|119719786|ref|YP_920281.1| - 0.076 13.1 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif Transposase_20 PF02371.16 gi|119719786|ref|YP_920281.1| - 0.15 12.4 0.0 0.32 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Ribosomal_60s PF00428.19 gi|119719787|ref|YP_920282.1| - 3.2e-19 69.3 14.7 3.7e-19 69.1 14.7 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|119719787|ref|YP_920282.1| - 0.00022 21.1 3.5 0.28 11.2 0.1 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain EF-hand_14 PF17959.1 gi|119719787|ref|YP_920282.1| - 0.0021 18.3 0.3 0.0054 17.1 0.0 1.7 2 0 0 2 2 2 1 EF-hand domain HTH_Tnp_Tc3_2 PF01498.18 gi|119719787|ref|YP_920282.1| - 0.087 13.1 0.0 0.48 10.7 0.0 1.9 2 0 0 2 2 2 0 Transposase DUF2868 PF11067.8 gi|119719787|ref|YP_920282.1| - 0.094 12.2 0.7 0.11 11.9 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) TFIID_30kDa PF03540.13 gi|119719787|ref|YP_920282.1| - 0.13 12.3 0.0 0.27 11.2 0.0 1.5 1 1 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit PhetRS_B1 PF18262.1 gi|119719787|ref|YP_920282.1| - 0.22 11.8 1.4 0.31 11.3 0.0 1.8 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain B5 PF03484.15 gi|119719787|ref|YP_920282.1| - 0.55 10.6 2.3 0.85 10.0 2.3 1.5 1 1 0 1 1 1 0 tRNA synthetase B5 domain Peptidase_A24 PF01478.18 gi|119719788|ref|YP_920283.1| - 1.8e-07 31.5 6.8 3.8e-07 30.5 6.8 1.6 1 0 0 1 1 1 1 Type IV leader peptidase family BTP PF05232.12 gi|119719788|ref|YP_920283.1| - 7 6.8 9.3 0.98 9.5 3.0 2.5 1 1 2 3 3 3 0 Chlorhexidine efflux transporter TIM PF00121.18 gi|119719789|ref|YP_920284.1| - 2.1e-12 46.9 0.0 6.8e-12 45.3 0.0 1.7 1 1 1 2 2 2 1 Triosephosphate isomerase NMO PF03060.15 gi|119719789|ref|YP_920284.1| - 0.0002 20.8 3.5 0.00025 20.6 3.5 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|119719789|ref|YP_920284.1| - 0.00065 19.1 1.2 0.0011 18.4 0.5 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|119719789|ref|YP_920284.1| - 0.00088 18.4 1.2 0.0025 16.9 0.3 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|119719789|ref|YP_920284.1| - 0.003 16.8 0.0 0.0058 15.8 0.0 1.4 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|119719789|ref|YP_920284.1| - 0.029 13.8 0.3 0.093 12.2 0.1 1.8 2 0 0 2 2 2 0 Histidine biosynthesis protein DHO_dh PF01180.21 gi|119719789|ref|YP_920284.1| - 0.035 13.3 0.4 0.063 12.5 0.1 1.5 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase PEP_hydrolase PF09370.10 gi|119719789|ref|YP_920284.1| - 0.054 12.7 0.1 0.11 11.7 0.1 1.5 1 1 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Radical_SAM PF04055.21 gi|119719790|ref|YP_920285.1| - 4.5e-13 49.9 0.0 8.1e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119719790|ref|YP_920285.1| - 3.9e-06 27.2 0.0 6.9e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119719790|ref|YP_920285.1| - 0.039 14.1 0.0 0.091 12.9 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Diphthamide_syn PF01866.17 gi|119719791|ref|YP_920286.1| - 1.4e-55 188.8 0.0 1.8e-55 188.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein AP_endonuc_2 PF01261.24 gi|119719792|ref|YP_920287.1| - 1e-19 70.8 0.4 1.5e-19 70.3 0.4 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ComA PF02679.15 gi|119719792|ref|YP_920287.1| - 0.057 12.9 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) PhoH PF02562.16 gi|119719793|ref|YP_920288.1| - 4.2e-33 114.6 0.0 5.8e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|119719793|ref|YP_920288.1| - 9.7e-08 31.7 0.5 0.00047 19.9 1.0 2.5 1 1 1 2 2 2 2 KH domain KH_1 PF00013.29 gi|119719793|ref|YP_920288.1| - 1.2e-06 28.3 0.2 0.00076 19.3 0.5 2.8 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|119719793|ref|YP_920288.1| - 1.8e-05 24.7 0.8 0.052 13.7 0.3 3.4 3 1 0 3 3 3 2 NusA-like KH domain AAA_22 PF13401.6 gi|119719793|ref|YP_920288.1| - 0.0022 18.3 0.0 0.0061 16.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain KH_4 PF13083.6 gi|119719793|ref|YP_920288.1| - 0.0063 16.4 0.1 4.3 7.3 0.0 2.6 2 0 0 2 2 2 2 KH domain KH_7 PF17214.3 gi|119719793|ref|YP_920288.1| - 0.0088 16.0 0.0 0.029 14.3 0.0 1.8 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.17 gi|119719793|ref|YP_920288.1| - 0.013 15.3 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Lipase_GDSL_2 PF13472.6 gi|119719793|ref|YP_920288.1| - 0.056 13.8 0.0 0.15 12.4 0.0 1.8 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family AAA_16 PF13191.6 gi|119719793|ref|YP_920288.1| - 0.073 13.5 0.2 0.6 10.5 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|119719793|ref|YP_920288.1| - 0.073 13.5 0.2 6.6 7.2 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Topoisom_bac PF01131.20 gi|119719794|ref|YP_920289.1| - 4.6e-113 378.3 0.0 5.6e-113 378.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|119719794|ref|YP_920289.1| - 1e-15 57.8 0.0 2.3e-15 56.7 0.0 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|119719794|ref|YP_920289.1| - 0.0031 17.9 0.0 0.0093 16.4 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|119719794|ref|YP_920289.1| - 0.0056 17.1 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Toprim-like ELYS PF13934.6 gi|119719794|ref|YP_920289.1| - 0.13 12.2 0.1 0.3 11.0 0.1 1.5 1 0 0 1 1 1 0 Nuclear pore complex assembly ASCH PF04266.14 gi|119719795|ref|YP_920290.1| - 5.8e-13 49.4 0.0 8.7e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 ASCH domain Sigma70_r4_2 PF08281.12 gi|119719795|ref|YP_920290.1| - 0.016 14.9 0.2 0.03 14.0 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|119719795|ref|YP_920290.1| - 0.026 14.0 0.2 0.12 11.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DHHA1 PF02272.19 gi|119719797|ref|YP_920292.1| - 4.4e-05 23.9 0.3 8.6e-05 23.0 0.3 1.5 1 0 0 1 1 1 1 DHHA1 domain MecA PF05389.12 gi|119719797|ref|YP_920292.1| - 0.032 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Negative regulator of genetic competence (MecA) DUF3253 PF11625.8 gi|119719797|ref|YP_920292.1| - 0.094 13.0 0.8 0.26 11.6 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) AAA_5 PF07728.14 gi|119719797|ref|YP_920292.1| - 0.16 12.0 0.1 0.28 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ACT PF01842.25 gi|119719798|ref|YP_920293.1| - 1.1e-07 31.5 0.1 8.6e-07 28.6 0.0 2.3 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|119719798|ref|YP_920293.1| - 0.0001 22.0 0.1 0.00025 20.8 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|119719798|ref|YP_920293.1| - 0.00021 21.8 0.1 0.012 16.2 0.0 2.8 2 2 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|119719798|ref|YP_920293.1| - 0.066 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain PALP PF00291.25 gi|119719799|ref|YP_920294.1| - 2.9e-42 145.1 0.0 3.6e-42 144.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GHMP_kinases_N PF00288.26 gi|119719800|ref|YP_920295.1| - 7.5e-21 74.1 0.7 1.6e-20 73.1 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|119719800|ref|YP_920295.1| - 1.6e-15 57.3 0.8 3.4e-15 56.2 0.2 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|119719800|ref|YP_920295.1| - 0.037 13.6 0.0 0.097 12.2 0.0 1.7 1 0 0 1 1 1 0 Galactokinase galactose-binding signature DUF2795 PF11387.8 gi|119719800|ref|YP_920295.1| - 0.05 13.8 1.5 8.9 6.6 0.0 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF2795) NEL PF14496.6 gi|119719801|ref|YP_920296.1| - 0.054 12.9 0.3 0.11 11.9 0.1 1.6 2 0 0 2 2 2 0 C-terminal novel E3 ligase, LRR-interacting Get5_C PF18514.1 gi|119719801|ref|YP_920296.1| - 0.16 11.7 0.1 3.6 7.4 0.0 2.7 2 0 0 2 2 2 0 Get5 C-terminal domain AMP-binding PF00501.28 gi|119719802|ref|YP_920297.1| - 4e-96 322.2 0.0 4.8e-96 321.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|119719802|ref|YP_920297.1| - 1.7e-30 105.8 2.6 4e-30 104.6 2.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|119719802|ref|YP_920297.1| - 3.5e-21 74.9 1.8 4.8e-21 74.4 0.6 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus FGGY_N PF00370.21 gi|119719803|ref|YP_920298.1| - 1.7e-70 237.4 0.0 2.6e-70 236.8 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|119719803|ref|YP_920298.1| - 4.6e-37 127.7 0.1 7e-37 127.1 0.1 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|119719803|ref|YP_920298.1| - 0.0014 18.1 0.0 0.16 11.4 0.0 2.5 2 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MAGI_u1 PF16663.5 gi|119719803|ref|YP_920298.1| - 0.066 13.3 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 Unstructured region on MAGI Hexapep PF00132.24 gi|119719804|ref|YP_920299.1| - 1.2e-25 88.2 18.3 2.3e-08 33.4 0.2 3.6 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|119719804|ref|YP_920299.1| - 1.3e-16 60.0 15.3 4.2e-08 32.8 3.3 3.9 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase DUF951 PF06107.11 gi|119719804|ref|YP_920299.1| - 0.043 13.7 0.2 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) BacteriocIIc_cy PF12173.8 gi|119719804|ref|YP_920299.1| - 0.099 12.9 0.2 0.15 12.3 0.2 1.4 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like zf-RING_7 PF02591.15 gi|119719804|ref|YP_920299.1| - 0.12 12.6 0.2 0.12 12.6 0.2 1.9 2 0 0 2 2 2 0 C4-type zinc ribbon domain SH3_7 PF12914.7 gi|119719804|ref|YP_920299.1| - 0.14 12.4 0.8 25 5.1 0.0 3.2 1 1 2 3 3 3 0 SH3 domain of SH3b2 type PknG_rubred PF16919.5 gi|119719804|ref|YP_920299.1| - 0.68 10.1 3.0 0.55 10.4 0.8 2.0 2 1 1 3 3 3 0 Protein kinase G rubredoxin domain MttA_Hcf106 PF02416.16 gi|119719805|ref|YP_920300.1| - 1.3e-15 56.4 1.1 1.6e-15 56.2 1.1 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family Rho_N PF07498.12 gi|119719805|ref|YP_920300.1| - 0.00074 19.4 2.9 0.00091 19.1 0.6 2.0 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain Ish1 PF10281.9 gi|119719805|ref|YP_920300.1| - 0.0067 16.7 0.2 0.012 15.9 0.2 1.5 1 1 0 1 1 1 1 Putative stress-responsive nuclear envelope protein SAP PF02037.27 gi|119719805|ref|YP_920300.1| - 0.0089 15.8 1.0 0.014 15.2 0.5 1.5 1 1 1 2 2 2 1 SAP domain FAM25 PF15825.5 gi|119719805|ref|YP_920300.1| - 0.013 15.8 0.8 2.1 8.8 0.1 2.2 2 0 0 2 2 2 0 FAM25 family Tir_receptor_M PF03549.14 gi|119719805|ref|YP_920300.1| - 0.11 12.9 0.5 2.2 8.7 0.1 2.3 2 1 0 2 2 2 0 Translocated intimin receptor (Tir) intimin-binding domain IF2_N PF04760.15 gi|119719805|ref|YP_920300.1| - 0.13 12.1 4.2 0.88 9.4 0.1 2.6 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HGD-D PF06050.13 gi|119719806|ref|YP_920301.1| - 0.00051 19.9 0.0 0.002 17.9 0.0 1.9 1 1 1 2 2 2 1 2-hydroxyglutaryl-CoA dehydratase, D-component Retrotrans_gag PF03732.17 gi|119719806|ref|YP_920301.1| - 0.00065 19.9 1.6 0.029 14.6 0.1 2.9 1 1 2 3 3 2 1 Retrotransposon gag protein CHASE3 PF05227.13 gi|119719806|ref|YP_920301.1| - 0.003 17.5 0.3 0.003 17.5 0.3 3.2 2 1 2 4 4 4 1 CHASE3 domain CAP_N PF01213.19 gi|119719806|ref|YP_920301.1| - 0.0078 15.7 1.8 0.013 15.0 1.8 1.4 1 0 0 1 1 1 1 Adenylate cyclase associated (CAP) N terminal Synaptobrevin PF00957.21 gi|119719806|ref|YP_920301.1| - 0.012 15.4 0.6 0.21 11.4 0.0 2.7 2 0 0 2 2 2 0 Synaptobrevin DUF724 PF05266.14 gi|119719806|ref|YP_920301.1| - 0.013 15.3 5.3 0.34 10.7 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF724) ArsA_ATPase PF02374.15 gi|119719806|ref|YP_920301.1| - 0.028 13.6 0.0 0.082 12.1 0.0 1.8 1 1 1 2 2 2 0 Anion-transporting ATPase LOH1CR12 PF10158.9 gi|119719806|ref|YP_920301.1| - 0.032 14.3 0.4 0.11 12.5 0.1 2.1 2 1 0 2 2 1 0 Tumour suppressor protein Prominin PF05478.11 gi|119719806|ref|YP_920301.1| - 0.039 11.9 0.3 0.05 11.6 0.3 1.2 1 0 0 1 1 1 0 Prominin RmuC PF02646.16 gi|119719806|ref|YP_920301.1| - 0.066 12.3 3.9 1.3 8.1 0.0 3.0 1 1 2 3 3 3 0 RmuC family Cytochrom_B562 PF07361.11 gi|119719806|ref|YP_920301.1| - 0.085 13.5 2.9 0.76 10.5 0.4 3.0 2 1 1 3 3 3 0 Cytochrome b562 DUF2313 PF10076.9 gi|119719806|ref|YP_920301.1| - 0.089 12.7 0.9 0.37 10.7 0.1 2.4 3 0 0 3 3 2 0 Uncharacterised protein conserved in bacteria (DUF2313) STAT_alpha PF01017.20 gi|119719806|ref|YP_920301.1| - 0.11 12.4 2.4 6.8 6.5 0.0 2.6 2 0 0 2 2 2 0 STAT protein, all-alpha domain FliG_N PF14842.6 gi|119719806|ref|YP_920301.1| - 0.13 12.8 5.0 0.096 13.2 0.7 2.9 2 1 0 3 3 2 0 FliG N-terminal domain Spectrin PF00435.21 gi|119719806|ref|YP_920301.1| - 0.15 12.6 9.0 0.13 12.7 1.4 3.3 1 1 1 3 3 3 0 Spectrin repeat Gp58 PF07902.11 gi|119719806|ref|YP_920301.1| - 0.16 10.3 1.0 0.5 8.6 0.0 1.8 1 1 1 2 2 2 0 gp58-like protein Laminin_II PF06009.12 gi|119719806|ref|YP_920301.1| - 0.18 11.8 8.0 2.1 8.4 0.1 3.0 1 1 2 3 3 3 0 Laminin Domain II LXG PF04740.12 gi|119719806|ref|YP_920301.1| - 0.19 11.4 3.0 1.3 8.7 1.0 3.4 2 1 0 2 2 2 0 LXG domain of WXG superfamily PqqD PF05402.12 gi|119719806|ref|YP_920301.1| - 0.21 11.9 1.7 20 5.6 0.0 3.4 3 1 0 3 3 2 0 Coenzyme PQQ synthesis protein D (PqqD) TMPIT PF07851.13 gi|119719806|ref|YP_920301.1| - 0.48 9.6 1.5 4 6.6 0.8 2.1 1 1 1 2 2 2 0 TMPIT-like protein Helo_like_N PF17111.5 gi|119719806|ref|YP_920301.1| - 0.48 9.7 4.9 5.2 6.4 0.9 2.7 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins DUF1759 PF03564.15 gi|119719806|ref|YP_920301.1| - 0.49 10.3 2.5 23 4.9 0.2 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF1759) RPW8 PF05659.11 gi|119719806|ref|YP_920301.1| - 0.5 10.0 3.3 2.4 7.8 0.2 3.0 3 1 1 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 BLOC1_2 PF10046.9 gi|119719806|ref|YP_920301.1| - 0.51 10.7 7.7 1.9 8.9 0.2 3.8 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GPO PF05929.11 gi|119719806|ref|YP_920301.1| - 0.67 9.5 4.9 2.6 7.6 2.3 2.2 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase UPF0242 PF06785.11 gi|119719806|ref|YP_920301.1| - 0.81 9.8 8.0 0.079 13.1 1.2 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus ISG65-75 PF11727.8 gi|119719806|ref|YP_920301.1| - 1.1 8.4 4.4 0.5 9.6 1.2 1.9 2 1 0 2 2 2 0 Invariant surface glycoprotein Occludin_ELL PF07303.13 gi|119719806|ref|YP_920301.1| - 1.9 9.2 5.0 1.7 9.4 1.8 2.5 2 1 1 3 3 2 0 Occludin homology domain Fib_alpha PF08702.10 gi|119719806|ref|YP_920301.1| - 2.1 8.6 3.5 24 5.1 0.8 2.9 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Exonuc_VII_L PF02601.15 gi|119719806|ref|YP_920301.1| - 3.4 7.1 9.1 8 5.9 9.1 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit PDDEXK_1 PF12705.7 gi|119719806|ref|YP_920301.1| - 7.7 6.3 8.7 9.8 6.0 4.7 2.2 1 1 1 2 2 2 0 PD-(D/E)XK nuclease superfamily Rx_N PF18052.1 gi|119719806|ref|YP_920301.1| - 9.8 6.5 13.9 43 4.5 5.2 3.9 1 1 1 2 2 2 0 Rx N-terminal domain CTP_transf_like PF01467.26 gi|119719807|ref|YP_920302.1| - 6.6e-13 49.1 0.0 8e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like RNase_HII PF01351.18 gi|119719808|ref|YP_920303.1| - 1.3e-48 165.5 0.0 1.5e-48 165.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Vps16_N PF04841.13 gi|119719809|ref|YP_920304.1| - 0.11 11.3 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region ROK PF00480.20 gi|119719810|ref|YP_920305.1| - 2.6e-59 201.1 0.0 3.1e-59 200.9 0.0 1.0 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.16 gi|119719810|ref|YP_920305.1| - 0.0033 16.5 0.0 0.13 11.2 0.0 2.2 2 0 0 2 2 2 2 Glucokinase BcrAD_BadFG PF01869.20 gi|119719810|ref|YP_920305.1| - 0.022 14.2 0.1 0.6 9.6 0.1 2.1 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|119719810|ref|YP_920305.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain tRNA-synt_1e PF01406.19 gi|119719811|ref|YP_920306.1| - 1.3e-129 431.9 0.0 1.6e-129 431.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|119719811|ref|YP_920306.1| - 2.2e-16 59.6 0.5 9.9e-11 41.0 0.2 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|119719811|ref|YP_920306.1| - 8.5e-09 34.2 0.0 2.9e-06 25.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 gi|119719811|ref|YP_920306.1| - 7.5e-08 32.7 0.5 3.1e-07 30.8 0.1 2.2 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|119719811|ref|YP_920306.1| - 0.021 13.7 0.1 0.56 9.1 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 gi|119719811|ref|YP_920306.1| - 0.022 13.7 0.6 0.092 11.6 0.2 2.3 2 1 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1d PF00750.19 gi|119719811|ref|YP_920306.1| - 0.092 11.7 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (R) Fe-ADH PF00465.19 gi|119719812|ref|YP_920307.1| - 0.063 12.1 0.0 0.11 11.3 0.0 1.4 1 1 0 1 1 1 0 Iron-containing alcohol dehydrogenase ABC_tran PF00005.27 gi|119719813|ref|YP_920308.1| - 7.7e-34 117.1 0.0 1e-33 116.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119719813|ref|YP_920308.1| - 3e-08 33.8 0.0 0.00054 19.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119719813|ref|YP_920308.1| - 2e-05 24.2 0.2 0.0089 15.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119719813|ref|YP_920308.1| - 0.00012 21.7 0.0 0.00022 20.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 gi|119719813|ref|YP_920308.1| - 0.003 16.6 0.0 0.0052 15.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|119719813|ref|YP_920308.1| - 0.0073 16.7 2.0 0.023 15.1 2.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|119719813|ref|YP_920308.1| - 0.011 15.3 0.5 0.015 14.9 0.5 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|119719813|ref|YP_920308.1| - 0.014 15.3 0.4 0.032 14.1 0.2 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|119719813|ref|YP_920308.1| - 0.028 14.9 0.1 10 6.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|119719813|ref|YP_920308.1| - 0.032 14.0 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119719813|ref|YP_920308.1| - 0.034 14.4 0.3 0.062 13.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119719813|ref|YP_920308.1| - 0.05 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119719813|ref|YP_920308.1| - 0.055 13.4 0.0 0.13 12.1 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|119719813|ref|YP_920308.1| - 0.062 12.1 0.2 6.8 5.4 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|119719813|ref|YP_920308.1| - 0.064 12.6 0.0 0.69 9.3 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|119719813|ref|YP_920308.1| - 0.085 13.0 0.1 0.18 11.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|119719813|ref|YP_920308.1| - 0.086 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) RNA12 PF10443.9 gi|119719813|ref|YP_920308.1| - 0.09 11.5 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein NACHT PF05729.12 gi|119719813|ref|YP_920308.1| - 0.11 12.4 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|119719813|ref|YP_920308.1| - 0.2 12.2 0.2 0.47 11.0 0.1 1.6 2 0 0 2 2 1 0 AAA domain BPD_transp_1 PF00528.22 gi|119719814|ref|YP_920309.1| - 3e-17 63.0 6.2 3e-17 63.0 6.2 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|119719815|ref|YP_920310.1| - 2.5e-59 200.4 1.4 2.9e-59 200.2 1.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|119719815|ref|YP_920310.1| - 1.4e-09 38.1 0.1 2.6e-08 34.1 0.1 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site Phosphonate-bd PF12974.7 gi|119719815|ref|YP_920310.1| - 2.5e-08 33.8 0.2 5.7e-07 29.4 0.2 2.1 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|119719815|ref|YP_920310.1| - 8.8e-05 22.5 0.8 0.0002 21.4 0.8 1.6 1 1 0 1 1 1 1 NMT1/THI5 like OpuAC PF04069.12 gi|119719815|ref|YP_920310.1| - 0.001 18.7 1.7 0.0018 17.9 1.7 1.4 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system YhfZ_C PF14503.6 gi|119719815|ref|YP_920310.1| - 0.021 14.4 0.5 0.26 10.8 0.3 2.0 1 1 1 2 2 2 0 YhfZ C-terminal domain DctP PF03480.13 gi|119719815|ref|YP_920310.1| - 0.037 13.4 0.0 5.5 6.2 0.0 2.1 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 LysR_substrate PF03466.20 gi|119719815|ref|YP_920310.1| - 0.08 12.3 0.0 1 8.7 0.0 2.0 2 0 0 2 2 2 0 LysR substrate binding domain Glyco_hydro_4 PF02056.16 gi|119719815|ref|YP_920310.1| - 0.085 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase ACT_7 PF13840.6 gi|119719816|ref|YP_920311.1| - 0.043 13.6 0.1 0.089 12.6 0.1 1.5 1 0 0 1 1 1 0 ACT domain ParA PF10609.9 gi|119719817|ref|YP_920312.1| - 5.8e-95 317.4 0.0 6.8e-95 317.2 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|119719817|ref|YP_920312.1| - 3.2e-16 59.5 0.0 7.7e-16 58.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|119719817|ref|YP_920312.1| - 1.7e-07 31.0 0.1 0.0011 18.4 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|119719817|ref|YP_920312.1| - 4.1e-07 30.1 0.1 7.8e-06 25.9 0.2 2.4 3 0 0 3 3 3 1 AAA domain AAA_26 PF13500.6 gi|119719817|ref|YP_920312.1| - 4.4e-05 23.4 0.7 0.17 11.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|119719817|ref|YP_920312.1| - 7.3e-05 22.2 0.2 0.00015 21.2 0.1 1.5 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|119719817|ref|YP_920312.1| - 0.00018 20.8 0.4 0.00029 20.1 0.4 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|119719817|ref|YP_920312.1| - 0.003 17.2 0.0 0.0059 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119719817|ref|YP_920312.1| - 0.011 15.4 0.5 0.019 14.7 0.5 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|119719817|ref|YP_920312.1| - 0.023 15.1 0.1 0.05 14.0 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119719817|ref|YP_920312.1| - 0.027 14.4 0.1 0.05 13.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase MeaB PF03308.16 gi|119719817|ref|YP_920312.1| - 0.028 13.4 0.1 0.049 12.6 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CBP_BcsQ PF06564.12 gi|119719817|ref|YP_920312.1| - 0.055 13.0 0.3 0.32 10.4 0.3 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|119719817|ref|YP_920312.1| - 0.074 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.14 gi|119719817|ref|YP_920312.1| - 0.1 12.6 0.0 1 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|119719817|ref|YP_920312.1| - 0.11 12.1 0.2 0.19 11.4 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|119719817|ref|YP_920312.1| - 0.12 12.2 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNA_helicase PF00910.22 gi|119719817|ref|YP_920312.1| - 0.14 12.5 0.0 0.31 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase VirC1 PF07015.11 gi|119719817|ref|YP_920312.1| - 0.16 11.2 0.1 0.36 10.1 0.1 1.5 1 0 0 1 1 1 0 VirC1 protein zf-CCCH_6 PF18585.1 gi|119719817|ref|YP_920312.1| - 0.36 10.7 1.0 5.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Chromatin remodeling factor Mit1 C-terminal Zn finger 2 Peptidase_M50 PF02163.22 gi|119719818|ref|YP_920313.1| - 2.3e-06 27.1 6.1 0.0021 17.4 0.1 3.1 2 1 1 3 3 3 3 Peptidase family M50 SBP_bac_8 PF13416.6 gi|119719819|ref|YP_920314.1| - 9.8e-33 114.2 0.1 1.1e-32 114.0 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|119719819|ref|YP_920314.1| - 6.3e-29 101.1 0.1 9.3e-29 100.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119719819|ref|YP_920314.1| - 6e-10 39.6 7.3 6.1e-09 36.3 7.3 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119719819|ref|YP_920314.1| - 3.7e-08 33.4 0.0 1.1e-07 31.9 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|119719819|ref|YP_920314.1| - 0.00023 20.9 0.9 0.00023 20.9 0.9 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|119719820|ref|YP_920315.1| - 1.4e-14 54.3 8.5 1.4e-14 54.3 8.5 1.9 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119719821|ref|YP_920316.1| - 7.4e-15 55.2 14.3 7.4e-15 55.2 14.3 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Peptidase_M48_N PF16491.5 gi|119719821|ref|YP_920316.1| - 1.9 8.4 14.1 0.37 10.7 6.5 2.7 1 1 1 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices ABC_tran PF00005.27 gi|119719822|ref|YP_920317.1| - 7.7e-37 126.9 0.0 1.2e-36 126.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119719822|ref|YP_920317.1| - 7.5e-13 48.9 1.2 2.3e-07 31.0 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|119719822|ref|YP_920317.1| - 2.4e-07 30.8 0.4 9.4e-07 28.9 0.1 2.2 2 0 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|119719822|ref|YP_920317.1| - 0.00025 21.5 0.1 0.0009 19.8 0.0 2.1 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA_25 PF13481.6 gi|119719822|ref|YP_920317.1| - 0.00077 19.1 0.9 0.58 9.7 0.0 2.7 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|119719822|ref|YP_920317.1| - 0.001 19.3 0.1 0.015 15.5 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|119719822|ref|YP_920317.1| - 0.0012 18.8 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|119719822|ref|YP_920317.1| - 0.0015 18.8 1.4 0.028 14.7 1.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719822|ref|YP_920317.1| - 0.0025 18.2 0.4 0.0074 16.7 0.4 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|119719822|ref|YP_920317.1| - 0.0027 18.2 0.0 0.0055 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119719822|ref|YP_920317.1| - 0.0029 17.1 0.0 0.18 11.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|119719822|ref|YP_920317.1| - 0.0057 16.6 0.0 0.0091 15.9 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|119719822|ref|YP_920317.1| - 0.0099 16.3 0.1 0.038 14.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|119719822|ref|YP_920317.1| - 0.012 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HSM3_N PF18795.1 gi|119719822|ref|YP_920317.1| - 0.04 13.3 0.0 0.056 12.9 0.0 1.1 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain NACHT PF05729.12 gi|119719822|ref|YP_920317.1| - 0.045 13.7 0.0 0.095 12.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain TniB PF05621.11 gi|119719822|ref|YP_920317.1| - 0.065 12.6 0.2 2.8 7.3 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein RsgA_GTPase PF03193.16 gi|119719822|ref|YP_920317.1| - 0.095 12.6 0.0 0.21 11.5 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|119719822|ref|YP_920317.1| - 0.098 12.9 0.1 0.34 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|119719822|ref|YP_920317.1| - 0.1 11.3 0.2 11 4.7 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|119719822|ref|YP_920317.1| - 0.19 11.4 0.0 13 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF1221 PF06760.11 gi|119719823|ref|YP_920318.1| - 0.22 11.0 0.0 0.29 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1221) Nitroreductase PF00881.24 gi|119719824|ref|YP_920319.1| - 1e-21 77.8 0.0 1.9e-14 54.1 0.0 3.1 3 0 0 3 3 3 3 Nitroreductase family TM1586_NiRdase PF14512.6 gi|119719824|ref|YP_920319.1| - 0.0016 18.1 0.1 0.055 13.0 0.0 2.6 3 0 0 3 3 3 1 Putative TM nitroreductase Ham1p_like PF01725.16 gi|119719825|ref|YP_920320.1| - 1e-46 159.2 0.0 1.2e-46 159.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF3219 PF11514.8 gi|119719827|ref|YP_920322.1| - 0.028 14.4 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3219) DUF2057 PF09829.9 gi|119719831|ref|YP_920326.1| - 0.012 15.8 0.1 0.45 10.7 0.0 2.8 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2057) DUF5305 PF17231.2 gi|119719831|ref|YP_920326.1| - 0.026 13.9 0.1 0.086 12.2 0.1 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5305) CBM_35 PF16990.5 gi|119719831|ref|YP_920326.1| - 0.043 14.1 2.7 0.38 11.0 0.0 2.9 3 1 0 3 3 3 0 Carbohydrate binding module (family 35) Big_3_5 PF16640.5 gi|119719831|ref|YP_920326.1| - 0.057 13.6 16.3 1.2 9.4 0.4 3.6 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) SoxY PF13501.6 gi|119719831|ref|YP_920326.1| - 0.07 13.4 3.0 0.93 9.7 0.4 3.2 3 1 0 3 3 3 0 Sulfur oxidation protein SoxY ATP_bind_3 PF01171.20 gi|119719832|ref|YP_920327.1| - 7.5e-12 45.4 0.0 2.2e-11 43.8 0.0 1.7 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|119719832|ref|YP_920327.1| - 4.8e-06 25.6 0.0 6.4e-06 25.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|119719832|ref|YP_920327.1| - 0.0035 16.8 2.2 0.0035 16.8 2.2 2.5 3 0 0 3 3 3 1 Zinc-ribbon QueH PF02677.14 gi|119719832|ref|YP_920327.1| - 0.095 12.8 0.0 0.42 10.7 0.0 2.0 2 1 0 2 2 2 0 Epoxyqueuosine reductase QueH RecR PF02132.15 gi|119719832|ref|YP_920327.1| - 0.099 12.2 8.3 1.3 8.7 0.8 2.7 3 0 0 3 3 3 0 RecR protein Ribosomal_S14 PF00253.21 gi|119719832|ref|YP_920327.1| - 3 7.7 8.1 5.4 6.9 0.6 3.0 3 0 0 3 3 3 0 Ribosomal protein S14p/S29e ThiS PF02597.20 gi|119719833|ref|YP_920328.1| - 7.1e-09 36.2 1.1 8.2e-09 36.0 1.1 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|119719833|ref|YP_920328.1| - 0.00013 21.7 1.3 0.00017 21.4 1.3 1.1 1 0 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.21 gi|119719833|ref|YP_920328.1| - 0.059 13.4 0.1 0.073 13.1 0.1 1.2 1 0 0 1 1 1 0 TGS domain UPF0147 PF03685.13 gi|119719833|ref|YP_920328.1| - 0.071 13.2 0.0 0.082 13.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) SLBB PF10531.9 gi|119719833|ref|YP_920328.1| - 0.13 12.1 2.4 1.4 8.8 0.0 2.7 3 0 0 3 3 3 0 SLBB domain CRS1_YhbY PF01985.21 gi|119719834|ref|YP_920329.1| - 5.7e-09 36.0 0.1 8e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain RTT107_BRCT_6 PF16771.5 gi|119719834|ref|YP_920329.1| - 0.046 13.9 0.1 0.058 13.5 0.1 1.2 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain COG6 PF06419.11 gi|119719834|ref|YP_920329.1| - 0.094 10.9 0.0 0.11 10.7 0.0 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 E3_UFM1_ligase PF09743.9 gi|119719834|ref|YP_920329.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 Metallophos PF00149.28 gi|119719835|ref|YP_920330.1| - 3.4e-07 31.0 2.1 0.0005 20.6 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|119719835|ref|YP_920330.1| - 4.3e-07 30.3 0.0 6.8e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain EccE PF11203.8 gi|119719835|ref|YP_920330.1| - 0.029 14.7 0.0 0.054 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative type VII ESX secretion system translocon, EccE HMG-CoA_red PF00368.18 gi|119719836|ref|YP_920331.1| - 8.5e-115 383.7 5.5 1e-114 383.4 5.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF3759 PF12585.8 gi|119719836|ref|YP_920331.1| - 0.05 13.6 1.3 0.17 11.9 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3759) CPBP PF02517.16 gi|119719837|ref|YP_920332.1| - 1.1e-08 35.4 12.1 2.9e-08 34.0 11.4 2.2 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease ECF_trnsprt PF12822.7 gi|119719838|ref|YP_920333.1| - 7.3e-06 26.2 15.9 9.4e-06 25.8 15.9 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component DUF4516 PF14990.6 gi|119719838|ref|YP_920333.1| - 0.026 14.2 0.4 0.12 12.1 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) PDR_assoc PF08370.11 gi|119719838|ref|YP_920333.1| - 1.2 8.9 6.3 1 9.2 4.0 2.1 2 1 1 3 3 3 0 Plant PDR ABC transporter associated DUF202 PF02656.15 gi|119719838|ref|YP_920333.1| - 9 6.8 9.5 2.3e+02 2.3 9.5 3.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DEAD_assoc PF08494.11 gi|119719839|ref|YP_920334.1| - 5.9e-59 199.1 0.3 6.1e-58 195.8 0.1 2.2 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|119719839|ref|YP_920334.1| - 1.1e-26 93.6 0.0 4.1e-26 91.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119719839|ref|YP_920334.1| - 1.5e-16 60.7 0.3 1.3e-15 57.7 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119719839|ref|YP_920334.1| - 1.8e-08 34.6 0.0 3.4e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|119719839|ref|YP_920334.1| - 0.0041 17.6 0.0 0.11 12.9 0.0 2.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) VP9 PF09625.10 gi|119719839|ref|YP_920334.1| - 0.016 15.3 0.0 11 6.3 0.0 2.8 2 0 0 2 2 2 0 VP9 protein SNF2_N PF00176.23 gi|119719839|ref|YP_920334.1| - 0.026 13.3 0.0 0.056 12.2 0.0 1.5 1 0 0 1 1 1 0 SNF2 family N-terminal domain T2SSE PF00437.20 gi|119719839|ref|YP_920334.1| - 0.031 13.3 0.0 0.08 12.0 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.16 gi|119719839|ref|YP_920334.1| - 0.084 12.3 0.0 0.35 10.3 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.6 gi|119719839|ref|YP_920334.1| - 0.19 12.1 0.3 1.2 9.5 0.1 2.4 2 1 0 2 2 2 0 AAA domain Peptidase_M28 PF04389.17 gi|119719840|ref|YP_920335.1| - 2.8e-10 40.2 0.0 1.6e-09 37.8 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M28 PA PF02225.22 gi|119719840|ref|YP_920335.1| - 9e-07 28.8 0.0 2.3e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 PA domain Glyco_hydro_57 PF03065.15 gi|119719841|ref|YP_920336.1| - 4.2e-31 108.4 0.2 1.3e-25 90.3 0.0 2.3 1 1 1 2 2 2 2 Glycosyl hydrolase family 57 YidC_periplas PF14849.6 gi|119719841|ref|YP_920336.1| - 7.3e-06 26.1 5.4 0.0049 16.8 1.1 3.9 3 1 0 3 3 3 2 YidC periplasmic domain A2M_BRD PF07703.14 gi|119719841|ref|YP_920336.1| - 0.14 12.5 0.5 0.66 10.3 0.2 2.3 2 0 0 2 2 2 0 Alpha-2-macroglobulin bait region domain CagX PF03524.15 gi|119719842|ref|YP_920337.1| - 0.022 14.5 0.8 4.3 7.0 0.1 2.2 2 0 0 2 2 2 0 Conjugal transfer protein DHHA1 PF02272.19 gi|119719843|ref|YP_920338.1| - 1.4e-07 32.0 0.1 2.7e-07 31.1 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain ABATE PF07336.11 gi|119719843|ref|YP_920338.1| - 0.029 15.0 2.0 0.045 14.4 0.0 2.2 3 0 0 3 3 3 0 Putative stress-induced transcription regulator DAO PF01266.24 gi|119719844|ref|YP_920339.1| - 7.4e-59 200.1 1.9 8.4e-59 199.9 1.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|119719844|ref|YP_920339.1| - 8.2e-10 38.3 5.6 8.5e-08 31.7 5.6 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|119719844|ref|YP_920339.1| - 1.3e-06 27.9 0.5 0.0054 16.0 0.1 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|119719844|ref|YP_920339.1| - 7.9e-06 25.5 0.4 1.8e-05 24.3 0.4 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|119719844|ref|YP_920339.1| - 1.2e-05 24.2 0.1 0.039 12.6 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|119719844|ref|YP_920339.1| - 1.9e-05 24.8 2.9 4.6e-05 23.5 2.9 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GMC_oxred_N PF00732.19 gi|119719844|ref|YP_920339.1| - 4.7e-05 22.9 0.7 0.0035 16.7 0.1 2.2 2 0 0 2 2 2 1 GMC oxidoreductase Thi4 PF01946.17 gi|119719844|ref|YP_920339.1| - 0.00035 19.9 0.2 0.00059 19.2 0.2 1.4 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|119719844|ref|YP_920339.1| - 0.00039 19.6 3.8 0.036 13.1 0.6 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.27 gi|119719844|ref|YP_920339.1| - 0.013 16.0 3.2 0.2 12.2 1.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|119719844|ref|YP_920339.1| - 0.019 14.2 1.9 0.032 13.5 1.3 1.6 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|119719844|ref|YP_920339.1| - 0.019 14.2 1.5 0.075 12.3 0.8 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119719844|ref|YP_920339.1| - 0.027 13.6 0.5 0.45 9.5 0.4 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|119719844|ref|YP_920339.1| - 3.9 7.5 5.8 1.6 8.7 1.2 2.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4 PF00037.27 gi|119719845|ref|YP_920340.1| - 2.5e-11 42.9 13.1 3.1e-08 33.1 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119719845|ref|YP_920340.1| - 2.2e-08 34.6 9.8 3.7e-08 33.8 9.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719845|ref|YP_920340.1| - 3.3e-07 30.3 20.8 0.00021 21.4 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119719845|ref|YP_920340.1| - 3.5e-07 30.3 9.5 5.6e-07 29.6 9.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119719845|ref|YP_920340.1| - 8.9e-07 28.9 8.2 1.9e-06 27.9 8.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119719845|ref|YP_920340.1| - 1.2e-06 28.6 10.4 3.3e-05 24.1 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119719845|ref|YP_920340.1| - 2.1e-06 27.4 16.0 3.1e-05 23.8 4.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119719845|ref|YP_920340.1| - 1.6e-05 24.7 15.7 0.00025 21.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119719845|ref|YP_920340.1| - 2.8e-05 24.7 9.2 0.00012 22.7 2.1 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|119719845|ref|YP_920340.1| - 0.00016 22.5 12.6 0.058 14.3 1.3 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|119719845|ref|YP_920340.1| - 0.015 15.8 1.0 0.015 15.8 1.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719845|ref|YP_920340.1| - 0.022 15.3 0.4 0.022 15.3 0.4 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|119719845|ref|YP_920340.1| - 0.027 14.9 10.6 0.035 14.5 0.9 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119719845|ref|YP_920340.1| - 0.088 13.8 20.0 0.86 10.7 7.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|119719846|ref|YP_920341.1| - 1.7e-35 122.7 1.3 1.7e-35 122.7 1.3 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|119719846|ref|YP_920341.1| - 2.4e-23 82.0 0.1 6.1e-23 80.7 0.1 1.8 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|119719846|ref|YP_920341.1| - 3.4e-13 49.5 0.0 4.2e-08 32.8 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|119719846|ref|YP_920341.1| - 1.1e-11 44.5 8.0 3e-07 29.9 0.3 3.6 2 1 1 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|119719846|ref|YP_920341.1| - 2.1e-11 43.9 4.4 2.8e-07 30.7 0.3 3.0 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|119719846|ref|YP_920341.1| - 3.1e-11 43.7 11.4 1.2e-05 25.7 2.1 5.1 5 1 0 5 5 4 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119719846|ref|YP_920341.1| - 3.4e-10 40.0 14.4 0.00066 19.4 0.1 3.8 2 2 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|119719846|ref|YP_920341.1| - 1e-09 37.7 3.0 6.8e-05 21.7 0.1 3.4 2 1 1 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|119719846|ref|YP_920341.1| - 1.4e-08 34.2 5.1 0.00019 20.6 0.1 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|119719846|ref|YP_920341.1| - 1.5e-08 34.2 0.9 8.1e-06 25.3 0.0 2.5 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|119719846|ref|YP_920341.1| - 8.2e-08 32.0 3.8 9.1e-07 28.6 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|119719846|ref|YP_920341.1| - 8.8e-08 31.8 2.7 7.1e-05 22.2 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.6 gi|119719846|ref|YP_920341.1| - 0.00014 21.1 0.2 0.065 12.4 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.24 gi|119719846|ref|YP_920341.1| - 0.00029 20.2 4.5 0.25 10.6 0.1 3.6 3 1 1 4 4 4 2 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|119719846|ref|YP_920341.1| - 0.0022 18.0 5.5 0.31 11.0 0.0 3.9 4 0 0 4 4 4 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|119719846|ref|YP_920341.1| - 0.0023 17.0 3.6 0.033 13.2 0.1 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|119719846|ref|YP_920341.1| - 0.0031 17.4 3.9 0.37 10.6 0.0 3.0 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|119719846|ref|YP_920341.1| - 0.013 15.0 0.2 5.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Glucose dehydrogenase C-terminus PALP PF00291.25 gi|119719846|ref|YP_920341.1| - 0.018 14.5 1.2 1.4 8.2 0.0 2.2 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme ApbA PF02558.16 gi|119719846|ref|YP_920341.1| - 0.024 14.3 1.0 0.037 13.7 0.1 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|119719846|ref|YP_920341.1| - 0.052 12.8 0.2 0.052 12.8 0.2 3.5 3 1 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain DHODB_Fe-S_bind PF10418.9 gi|119719846|ref|YP_920341.1| - 0.089 12.6 1.8 0.17 11.7 1.8 1.4 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Shikimate_DH PF01488.20 gi|119719846|ref|YP_920341.1| - 0.11 12.5 0.1 21 5.2 0.1 2.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|119719846|ref|YP_920341.1| - 0.13 12.7 6.3 0.88 10.0 0.2 2.8 3 0 0 3 3 3 0 Putative NAD(P)-binding DUF402 PF04167.13 gi|119719848|ref|YP_920343.1| - 0.035 14.3 0.5 3.4 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF402) Lactamase_B PF00753.27 gi|119719849|ref|YP_920344.1| - 2.1e-16 60.6 0.0 2.7e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CBS PF00571.28 gi|119719850|ref|YP_920345.1| - 1.9e-25 89.0 7.7 3.4e-13 49.8 1.9 3.3 3 0 0 3 3 3 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|119719850|ref|YP_920345.1| - 1.4e-23 82.3 0.3 1.6e-22 78.9 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|119719850|ref|YP_920345.1| - 1.1e-08 35.2 0.2 3.5e-08 33.7 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|119719850|ref|YP_920345.1| - 6.2e-07 29.3 0.0 1.2e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|119719850|ref|YP_920345.1| - 1.8e-05 24.2 0.0 9.8e-05 21.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|119719850|ref|YP_920345.1| - 5.4e-05 22.9 0.1 0.0018 18.0 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119719850|ref|YP_920345.1| - 5.8e-05 22.9 0.0 0.00021 21.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|119719850|ref|YP_920345.1| - 0.00023 21.0 0.0 0.00077 19.3 0.0 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119719850|ref|YP_920345.1| - 0.00025 20.9 0.1 0.0012 18.7 0.0 2.2 2 0 0 2 2 1 1 MarR family GntR PF00392.21 gi|119719850|ref|YP_920345.1| - 0.00029 20.4 0.0 0.0011 18.6 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|119719850|ref|YP_920345.1| - 0.00031 20.7 0.0 0.02 14.9 0.0 2.7 3 0 0 3 3 2 1 Winged helix-turn helix HTH_27 PF13463.6 gi|119719850|ref|YP_920345.1| - 0.00053 20.4 0.0 0.002 18.6 0.0 2.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|119719850|ref|YP_920345.1| - 0.00059 19.9 0.0 0.0041 17.1 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_15 PF12324.8 gi|119719850|ref|YP_920345.1| - 0.00095 19.1 0.1 0.0031 17.4 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase Sigma70_r4 PF04545.16 gi|119719850|ref|YP_920345.1| - 0.012 15.1 0.2 0.087 12.4 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|119719850|ref|YP_920345.1| - 0.015 15.1 0.4 6.9 6.5 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|119719850|ref|YP_920345.1| - 0.015 15.2 0.0 0.051 13.6 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|119719850|ref|YP_920345.1| - 0.016 15.4 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r3 PF04539.16 gi|119719850|ref|YP_920345.1| - 0.017 15.2 0.0 0.044 13.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_23 PF13384.6 gi|119719850|ref|YP_920345.1| - 0.021 14.6 0.0 0.41 10.5 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|119719850|ref|YP_920345.1| - 0.041 13.6 0.1 0.4 10.4 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 FaeA PF04703.12 gi|119719850|ref|YP_920345.1| - 0.056 13.8 0.0 0.17 12.3 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein LexA_DNA_bind PF01726.16 gi|119719850|ref|YP_920345.1| - 0.069 12.9 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Penicillinase_R PF03965.16 gi|119719850|ref|YP_920345.1| - 0.091 13.1 0.0 0.29 11.5 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor DUF4423 PF14394.6 gi|119719850|ref|YP_920345.1| - 0.14 11.9 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) BDM PF10684.9 gi|119719850|ref|YP_920345.1| - 0.15 12.4 0.0 0.39 11.1 0.0 1.7 1 0 0 1 1 1 0 Putative biofilm-dependent modulation protein Nre_N PF04894.12 gi|119719851|ref|YP_920346.1| - 1.5e-93 313.6 0.0 1.8e-93 313.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|119719851|ref|YP_920346.1| - 2.1e-31 108.1 0.0 3.9e-31 107.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Aldo_ket_red PF00248.21 gi|119719852|ref|YP_920347.1| - 1.4e-57 195.2 0.0 1.6e-55 188.4 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family TINF2_N PF14973.6 gi|119719852|ref|YP_920347.1| - 0.16 12.3 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus PBP PF01161.20 gi|119719853|ref|YP_920348.1| - 1.1e-31 109.9 0.0 1.4e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ChitinaseA_N PF08329.10 gi|119719854|ref|YP_920349.1| - 0.14 11.8 0.2 0.2 11.3 0.2 1.2 1 0 0 1 1 1 0 Chitinase A, N-terminal domain DUF2341 PF10102.9 gi|119719855|ref|YP_920350.1| - 1e-23 83.7 0.1 6.6e-23 81.1 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) CARDB PF07705.11 gi|119719855|ref|YP_920350.1| - 2.8e-05 24.3 1.6 0.017 15.3 0.3 2.9 2 0 0 2 2 2 2 CARDB DUF1080 PF06439.11 gi|119719855|ref|YP_920350.1| - 0.00015 21.9 0.1 0.0005 20.2 0.1 1.9 1 1 0 1 1 1 1 Domain of Unknown Function (DUF1080) FlgD_ig PF13860.6 gi|119719855|ref|YP_920350.1| - 0.038 13.8 0.5 0.48 10.3 0.2 2.7 2 0 0 2 2 2 0 FlgD Ig-like domain Thymidylat_synt PF00303.19 gi|119719856|ref|YP_920351.1| - 4e-10 39.3 0.0 6.4e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 Thymidylate synthase DUF4346 PF14251.6 gi|119719856|ref|YP_920351.1| - 2.2e-06 27.7 0.1 5.2e-06 26.5 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) GHMP_kinases_C PF08544.13 gi|119719856|ref|YP_920351.1| - 0.024 15.0 0.6 0.27 11.6 0.0 3.1 4 0 0 4 4 4 0 GHMP kinases C terminal Aminotran_5 PF00266.19 gi|119719857|ref|YP_920352.1| - 3.9e-133 444.0 0.0 4.4e-133 443.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|119719857|ref|YP_920352.1| - 3.1e-08 33.2 0.0 4.3e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|119719857|ref|YP_920352.1| - 1.9e-06 26.7 0.0 5.6e-06 25.1 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|119719857|ref|YP_920352.1| - 0.00012 21.5 0.0 0.00014 21.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|119719857|ref|YP_920352.1| - 0.0042 16.1 0.2 0.011 14.7 0.2 1.6 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.19 gi|119719857|ref|YP_920352.1| - 0.027 13.2 0.0 0.05 12.3 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain tRNA-synt_2d PF01409.20 gi|119719858|ref|YP_920353.1| - 7.1e-79 264.7 0.0 9.7e-79 264.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|119719858|ref|YP_920353.1| - 6.2e-05 22.5 0.0 0.0027 17.2 0.0 2.9 3 0 0 3 3 3 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|119719858|ref|YP_920353.1| - 9.9e-05 21.6 0.4 0.11 11.5 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) HTH_Crp_2 PF13545.6 gi|119719858|ref|YP_920353.1| - 0.0018 18.2 3.7 0.083 12.9 0.6 3.9 3 2 0 3 3 3 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|119719858|ref|YP_920353.1| - 0.076 12.9 0.3 0.34 10.8 0.1 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|119719858|ref|YP_920353.1| - 0.093 12.8 2.3 0.3 11.2 1.3 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain PKS_DE PF18369.1 gi|119719858|ref|YP_920353.1| - 1.1 9.8 5.9 0.97 10.1 0.2 3.0 3 0 0 3 3 3 0 Polyketide synthase dimerisation element domain tRNA_synthFbeta PF17759.1 gi|119719859|ref|YP_920354.1| - 4.5e-39 134.1 0.0 6.9e-39 133.5 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|119719859|ref|YP_920354.1| - 5.2e-18 65.1 0.1 1.5e-12 47.6 0.1 2.8 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|119719859|ref|YP_920354.1| - 1.1e-13 51.3 0.0 2e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|119719859|ref|YP_920354.1| - 4.6e-07 29.6 0.0 1.3e-06 28.1 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|119719859|ref|YP_920354.1| - 0.18 12.1 0.0 0.82 9.9 0.0 2.2 2 1 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain HAD_2 PF13419.6 gi|119719860|ref|YP_920355.1| - 2.4e-18 66.8 0.0 4.1e-18 66.1 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119719860|ref|YP_920355.1| - 1.7e-12 48.1 0.0 4.4e-12 46.8 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119719860|ref|YP_920355.1| - 1.6e-09 37.7 0.0 1.2e-08 34.8 0.0 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|119719860|ref|YP_920355.1| - 0.00064 20.2 0.4 0.0015 19.0 0.4 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|119719860|ref|YP_920355.1| - 0.0055 16.8 0.1 4.1 7.6 0.0 2.7 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase HTH_34 PF13601.6 gi|119719861|ref|YP_920356.1| - 6.4e-14 51.9 0.0 7.6e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|119719861|ref|YP_920356.1| - 0.00013 21.7 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119719861|ref|YP_920356.1| - 0.00021 21.3 0.1 0.0021 18.1 0.0 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|119719861|ref|YP_920356.1| - 0.00023 21.0 0.0 0.00037 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|119719861|ref|YP_920356.1| - 0.0011 18.7 0.0 0.0019 18.0 0.0 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|119719861|ref|YP_920356.1| - 0.0025 17.7 0.0 0.006 16.4 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|119719861|ref|YP_920356.1| - 0.0094 15.9 0.1 0.014 15.4 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|119719861|ref|YP_920356.1| - 0.015 15.2 0.0 0.026 14.4 0.0 1.5 1 1 0 1 1 1 0 MarR family DUF480 PF04337.12 gi|119719861|ref|YP_920356.1| - 0.12 12.5 0.1 4.1 7.5 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF480 YfhO PF09586.10 gi|119719862|ref|YP_920357.1| - 0.43 8.8 9.7 0.49 8.6 9.7 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF2070 PF09843.9 gi|119719862|ref|YP_920357.1| - 0.52 8.5 11.2 0.62 8.3 11.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) SirB PF04247.12 gi|119719862|ref|YP_920357.1| - 2 8.5 12.7 0.14 12.2 1.3 2.7 1 1 1 2 2 2 0 Invasion gene expression up-regulator, SirB Mrr_cat PF04471.12 gi|119719863|ref|YP_920358.1| - 0.0055 16.7 0.0 0.0069 16.4 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease LEA_2 PF03168.13 gi|119719864|ref|YP_920359.1| - 1.5e-12 47.9 0.0 2.3e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Late embryogenesis abundant protein AAA_12 PF13087.6 gi|119719866|ref|YP_920361.1| - 1.2e-44 152.3 0.0 2.2e-44 151.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|119719866|ref|YP_920361.1| - 5.2e-37 128.0 0.0 8.7e-37 127.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119719866|ref|YP_920361.1| - 6.7e-16 58.6 0.0 2.2e-09 37.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|119719866|ref|YP_920361.1| - 6.3e-14 52.5 3.8 1.2e-11 45.2 0.5 3.4 3 1 0 3 3 2 1 AAA domain Viral_helicase1 PF01443.18 gi|119719866|ref|YP_920361.1| - 3e-11 43.5 0.2 3.2e-05 23.8 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD_C_2 PF13538.6 gi|119719866|ref|YP_920361.1| - 1.5e-05 24.7 0.0 4.2e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.21 gi|119719866|ref|YP_920361.1| - 1.8e-05 24.4 0.3 0.0045 16.6 0.1 2.4 1 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain SRP54 PF00448.22 gi|119719866|ref|YP_920361.1| - 2.9e-05 23.8 0.0 9.3e-05 22.1 0.0 1.9 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|119719866|ref|YP_920361.1| - 4.6e-05 23.9 0.3 0.00015 22.2 0.3 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119719866|ref|YP_920361.1| - 5.1e-05 23.7 0.1 0.00031 21.2 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|119719866|ref|YP_920361.1| - 8e-05 23.2 0.0 0.00015 22.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 gi|119719866|ref|YP_920361.1| - 0.00012 22.3 0.0 0.00049 20.3 0.0 2.2 1 0 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|119719866|ref|YP_920361.1| - 0.00033 20.1 0.0 0.074 12.4 0.0 2.6 3 0 0 3 3 3 1 UvrD-like helicase C-terminal domain PhoH PF02562.16 gi|119719866|ref|YP_920361.1| - 0.00036 20.0 0.0 0.0072 15.8 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.6 gi|119719866|ref|YP_920361.1| - 0.00039 20.7 1.2 0.0025 18.1 0.4 2.7 2 1 0 2 2 1 1 AAA domain ResIII PF04851.15 gi|119719866|ref|YP_920361.1| - 0.0015 18.5 0.0 0.0071 16.4 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|119719866|ref|YP_920361.1| - 0.0022 17.6 0.0 0.0076 15.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|119719866|ref|YP_920361.1| - 0.0022 18.1 0.3 0.0072 16.4 0.3 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|119719866|ref|YP_920361.1| - 0.0026 16.8 0.6 0.0095 14.9 0.1 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ArsA_ATPase PF02374.15 gi|119719866|ref|YP_920361.1| - 0.0032 16.7 0.7 0.047 12.9 0.1 2.7 3 0 0 3 3 3 1 Anion-transporting ATPase Helicase_RecD PF05127.14 gi|119719866|ref|YP_920361.1| - 0.0043 16.9 0.3 0.32 10.8 0.0 2.6 3 0 0 3 3 2 1 Helicase ATPase_2 PF01637.18 gi|119719866|ref|YP_920361.1| - 0.0047 16.9 0.0 0.03 14.3 0.0 2.2 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|119719866|ref|YP_920361.1| - 0.0051 16.8 0.6 0.016 15.2 0.0 2.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_31 PF13614.6 gi|119719866|ref|YP_920361.1| - 0.0052 16.7 0.2 0.041 13.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain PIF1 PF05970.14 gi|119719866|ref|YP_920361.1| - 0.0054 15.9 0.0 0.058 12.6 0.0 2.1 2 0 0 2 2 2 1 PIF1-like helicase Rad17 PF03215.15 gi|119719866|ref|YP_920361.1| - 0.006 16.5 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|119719866|ref|YP_920361.1| - 0.0083 15.9 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein T2SSE PF00437.20 gi|119719866|ref|YP_920361.1| - 0.01 14.9 0.1 0.019 14.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|119719866|ref|YP_920361.1| - 0.012 15.6 0.1 0.038 13.9 0.0 1.9 2 0 0 2 2 1 0 NACHT domain NTPase_1 PF03266.15 gi|119719866|ref|YP_920361.1| - 0.012 15.5 2.4 0.029 14.3 0.2 2.6 3 0 0 3 3 2 0 NTPase AAA_7 PF12775.7 gi|119719866|ref|YP_920361.1| - 0.013 15.0 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|119719866|ref|YP_920361.1| - 0.014 14.7 0.3 1.1 8.4 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.9 gi|119719866|ref|YP_920361.1| - 0.014 14.3 0.0 0.028 13.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.6 gi|119719866|ref|YP_920361.1| - 0.021 15.1 0.2 0.087 13.1 0.1 2.2 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.6 gi|119719866|ref|YP_920361.1| - 0.021 15.4 0.2 0.091 13.3 0.3 2.2 2 1 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|119719866|ref|YP_920361.1| - 0.022 14.1 0.0 0.052 12.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|119719866|ref|YP_920361.1| - 0.037 13.4 0.0 0.098 12.0 0.0 1.7 1 0 0 1 1 1 0 KaiC AAA_24 PF13479.6 gi|119719866|ref|YP_920361.1| - 0.038 13.7 0.0 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|119719866|ref|YP_920361.1| - 0.097 12.6 0.1 0.3 11.0 0.0 1.9 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Apt1 PF10351.9 gi|119719866|ref|YP_920361.1| - 0.12 11.2 1.0 0.17 10.7 1.0 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain TsaE PF02367.17 gi|119719866|ref|YP_920361.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase PF01078.21 gi|119719866|ref|YP_920361.1| - 0.14 11.5 0.0 0.49 9.7 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MazE_antitoxin PF04014.18 gi|119719867|ref|YP_920362.1| - 4.4e-10 39.3 2.5 7.8e-10 38.5 2.5 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|119719867|ref|YP_920362.1| - 0.00011 22.6 0.0 0.00013 22.3 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin SymE_toxin PF08845.10 gi|119719867|ref|YP_920362.1| - 0.044 13.8 0.0 0.084 12.9 0.0 1.5 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system bZIP_1 PF00170.21 gi|119719868|ref|YP_920363.1| - 0.023 14.8 1.3 0.86 9.8 0.1 2.2 2 0 0 2 2 2 0 bZIP transcription factor RHH_4 PF13467.6 gi|119719868|ref|YP_920363.1| - 0.067 13.1 0.8 0.64 9.9 0.8 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix domain NBP1 PF08537.10 gi|119719868|ref|YP_920363.1| - 0.072 12.5 0.4 0.087 12.2 0.4 1.0 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 Toxin_36 PF10550.9 gi|119719868|ref|YP_920363.1| - 1.4 10.4 9.8 4.3 9.0 2.2 2.5 2 0 0 2 2 2 0 Conantokin-G mollusc-toxin AAA_14 PF13173.6 gi|119719869|ref|YP_920364.1| - 2.4e-24 85.8 0.0 4.9e-24 84.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|119719869|ref|YP_920364.1| - 1e-11 45.0 0.1 1.9e-11 44.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|119719869|ref|YP_920364.1| - 9.3e-06 25.7 0.6 3.9e-05 23.7 0.1 2.2 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_35 PF14516.6 gi|119719869|ref|YP_920364.1| - 0.0046 15.8 0.0 0.0079 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.6 gi|119719869|ref|YP_920364.1| - 0.031 14.7 0.0 0.066 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|119719869|ref|YP_920364.1| - 0.088 13.1 0.1 1.2 9.5 0.0 2.2 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|119719869|ref|YP_920364.1| - 0.097 13.1 0.0 0.27 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DUF4661 PF15576.6 gi|119719871|ref|YP_920366.1| - 0.13 12.1 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4661) DUF2075 PF09848.9 gi|119719872|ref|YP_920367.1| - 3e-76 257.0 0.0 3.9e-76 256.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NERD PF08378.11 gi|119719872|ref|YP_920367.1| - 0.00043 20.7 0.0 0.00097 19.6 0.0 1.6 1 0 0 1 1 1 1 Nuclease-related domain AAA_16 PF13191.6 gi|119719872|ref|YP_920367.1| - 0.00052 20.4 0.2 0.0012 19.3 0.2 1.5 1 0 0 1 1 1 1 AAA ATPase domain DEAD PF00270.29 gi|119719872|ref|YP_920367.1| - 0.00072 19.4 0.0 0.08 12.7 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase T2SSE PF00437.20 gi|119719872|ref|YP_920367.1| - 0.0054 15.8 0.0 0.0078 15.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|119719872|ref|YP_920367.1| - 0.01 16.1 0.1 0.045 14.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|119719872|ref|YP_920367.1| - 0.011 15.8 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PIF1 PF05970.14 gi|119719872|ref|YP_920367.1| - 0.017 14.3 0.0 0.026 13.7 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase IstB_IS21 PF01695.17 gi|119719872|ref|YP_920367.1| - 0.018 14.8 0.0 0.043 13.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.16 gi|119719872|ref|YP_920367.1| - 0.02 14.4 0.1 0.36 10.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein ATPase PF06745.13 gi|119719872|ref|YP_920367.1| - 0.15 11.4 0.1 0.34 10.2 0.1 1.5 1 0 0 1 1 1 0 KaiC Big_3_4 PF13754.6 gi|119719874|ref|YP_920369.1| - 0.066 13.0 0.0 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function SopA PF13981.6 gi|119719874|ref|YP_920369.1| - 0.14 12.6 0.0 0.35 11.3 0.0 1.6 1 0 0 1 1 1 0 SopA-like central domain Holin_BhlA PF10960.8 gi|119719874|ref|YP_920369.1| - 0.15 12.0 0.1 0.31 11.0 0.1 1.4 1 0 0 1 1 1 0 BhlA holin family zinc_ribbon_4 PF13717.6 gi|119719876|ref|YP_920371.1| - 0.00023 21.0 0.2 0.2 11.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Mu-like_Com PF10122.9 gi|119719876|ref|YP_920371.1| - 0.00029 20.2 0.2 0.083 12.4 0.0 2.1 1 1 1 2 2 2 1 Mu-like prophage protein Com Prim_Zn_Ribbon PF08273.12 gi|119719876|ref|YP_920371.1| - 0.001 19.3 1.0 0.56 10.5 0.0 2.3 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase zinc_ribbon_5 PF13719.6 gi|119719876|ref|YP_920371.1| - 0.0011 18.7 0.4 0.73 9.6 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain CpXC PF14353.6 gi|119719876|ref|YP_920371.1| - 0.0014 18.6 0.8 0.95 9.5 0.1 2.1 1 1 1 2 2 2 2 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|119719876|ref|YP_920371.1| - 0.0014 18.5 3.8 0.024 14.6 4.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|119719876|ref|YP_920371.1| - 0.0018 18.3 3.7 0.017 15.2 0.2 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|119719876|ref|YP_920371.1| - 0.002 18.2 0.3 1.4 9.1 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|119719876|ref|YP_920371.1| - 0.0021 18.4 3.2 0.44 11.1 0.4 2.3 2 0 0 2 2 2 1 Zinc-finger double domain zf-C2H2_4 PF13894.6 gi|119719876|ref|YP_920371.1| - 0.0023 18.6 2.0 0.71 10.9 0.2 2.4 2 0 0 2 2 2 1 C2H2-type zinc finger zf-ribbon_3 PF13248.6 gi|119719876|ref|YP_920371.1| - 0.0033 16.8 2.2 0.53 9.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119719876|ref|YP_920371.1| - 0.0052 16.3 0.6 0.52 9.9 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding ADK_lid PF05191.14 gi|119719876|ref|YP_920371.1| - 0.0079 16.2 2.4 0.019 14.9 0.1 2.1 2 0 0 2 2 2 1 Adenylate kinase, active site lid zf-C4_Topoisom PF01396.19 gi|119719876|ref|YP_920371.1| - 0.01 15.6 0.5 2.5 8.0 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2HC_2 PF13913.6 gi|119719876|ref|YP_920371.1| - 0.013 15.3 7.3 0.68 9.9 1.1 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TFIIS_C PF01096.18 gi|119719876|ref|YP_920371.1| - 0.023 14.5 1.0 0.89 9.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1 PF03811.13 gi|119719876|ref|YP_920371.1| - 0.024 14.3 0.2 3.5 7.4 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain HypA PF01155.19 gi|119719876|ref|YP_920371.1| - 0.028 14.4 0.0 0.035 14.1 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|119719876|ref|YP_920371.1| - 0.028 15.1 0.6 6.7 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Terminase_GpA PF05876.12 gi|119719876|ref|YP_920371.1| - 0.035 12.7 0.2 0.04 12.5 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-Mss51 PF13824.6 gi|119719876|ref|YP_920371.1| - 0.036 14.1 0.3 3.8 7.7 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.10 gi|119719876|ref|YP_920371.1| - 0.049 13.4 0.6 2.9 7.7 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF2752 PF10825.8 gi|119719876|ref|YP_920371.1| - 0.054 13.6 1.2 1 9.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) TRAF6_Z2 PF18048.1 gi|119719876|ref|YP_920371.1| - 0.058 13.5 2.0 5 7.3 0.1 2.2 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 DUF35_N PF12172.8 gi|119719876|ref|YP_920371.1| - 0.064 13.1 1.6 5.6 7.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_9 PF14369.6 gi|119719876|ref|YP_920371.1| - 0.066 13.5 1.7 4.8 7.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon zf-AN1 PF01428.16 gi|119719876|ref|YP_920371.1| - 0.071 13.3 1.2 11 6.3 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-tcix PF14952.6 gi|119719876|ref|YP_920371.1| - 0.077 12.6 1.8 2.4 7.9 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YacG PF03884.14 gi|119719876|ref|YP_920371.1| - 0.085 12.6 0.1 14 5.5 0.0 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG PhnA_Zn_Ribbon PF08274.12 gi|119719876|ref|YP_920371.1| - 0.092 12.7 2.3 2.5 8.1 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|119719876|ref|YP_920371.1| - 0.098 12.6 2.2 0.65 10.0 2.2 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|119719876|ref|YP_920371.1| - 0.11 12.3 6.1 1.8 8.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|119719876|ref|YP_920371.1| - 0.17 11.5 1.7 6.6 6.4 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF2387 PF09526.10 gi|119719876|ref|YP_920371.1| - 0.18 12.0 0.4 1.1 9.5 0.0 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Cys_rich_CPXG PF14255.6 gi|119719876|ref|YP_920371.1| - 0.19 11.7 2.3 3.7 7.5 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_7 PF02591.15 gi|119719876|ref|YP_920371.1| - 0.19 12.0 1.8 2.3 8.5 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ACC PF17848.1 gi|119719876|ref|YP_920371.1| - 0.33 11.1 2.8 7.6 6.7 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-RanBP PF00641.18 gi|119719876|ref|YP_920371.1| - 0.39 10.1 3.0 4.9 6.6 0.2 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-C2H2 PF00096.26 gi|119719876|ref|YP_920371.1| - 0.6 10.7 4.7 7 7.3 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Anti-TRAP PF15777.5 gi|119719876|ref|YP_920371.1| - 1.3 9.0 5.1 12 5.9 5.1 2.0 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-TFIIB PF13453.6 gi|119719876|ref|YP_920371.1| - 1.6 8.1 6.6 17 4.8 6.7 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger Lar_restr_allev PF14354.6 gi|119719876|ref|YP_920371.1| - 1.7 9.0 6.7 22 5.5 6.7 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ogr_Delta PF04606.12 gi|119719876|ref|YP_920371.1| - 2.8 8.0 5.4 9.2 6.3 0.6 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Asp_protease_2 PF13650.6 gi|119719877|ref|YP_920372.1| - 6.4e-08 33.1 0.2 1e-07 32.5 0.2 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|119719877|ref|YP_920372.1| - 3.6e-07 30.7 0.2 5.7e-07 30.0 0.2 1.4 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|119719877|ref|YP_920372.1| - 0.013 15.8 0.0 0.021 15.1 0.0 1.7 1 1 0 1 1 1 0 Retroviral aspartyl protease Peptidase_A3 PF02160.15 gi|119719877|ref|YP_920372.1| - 0.074 12.5 0.0 0.088 12.3 0.0 1.3 1 1 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) TMF_DNA_bd PF12329.8 gi|119719879|ref|YP_920374.1| - 0.0088 16.0 1.6 0.019 15.0 1.6 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding Spc7 PF08317.11 gi|119719879|ref|YP_920374.1| - 0.0088 15.0 4.5 0.011 14.6 4.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|119719879|ref|YP_920374.1| - 0.0093 16.2 0.2 0.018 15.3 0.2 1.5 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 LRRFIP PF09738.9 gi|119719879|ref|YP_920374.1| - 0.011 15.2 2.0 0.015 14.8 2.0 1.3 1 0 0 1 1 1 0 LRRFIP family Laminin_II PF06009.12 gi|119719879|ref|YP_920374.1| - 0.011 15.7 0.4 0.018 15.0 0.4 1.3 1 0 0 1 1 1 0 Laminin Domain II SlyX PF04102.12 gi|119719879|ref|YP_920374.1| - 0.014 16.0 1.4 0.032 14.8 0.9 2.0 2 0 0 2 2 1 0 SlyX Seryl_tRNA_N PF02403.22 gi|119719879|ref|YP_920374.1| - 0.014 15.6 0.5 0.022 15.0 0.5 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF724 PF05266.14 gi|119719879|ref|YP_920374.1| - 0.027 14.3 0.6 0.04 13.8 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TFA2_Winged_2 PF18121.1 gi|119719879|ref|YP_920374.1| - 0.031 14.0 1.2 0.092 12.4 0.5 2.2 2 1 0 2 2 1 0 TFA2 Winged helix domain 2 Dehyd-heme_bind PF09098.10 gi|119719879|ref|YP_920374.1| - 0.031 13.9 0.2 0.045 13.4 0.2 1.3 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding DUF16 PF01519.16 gi|119719879|ref|YP_920374.1| - 0.042 14.4 0.2 0.091 13.3 0.3 1.5 2 0 0 2 2 1 0 Protein of unknown function DUF16 FlaC_arch PF05377.11 gi|119719879|ref|YP_920374.1| - 0.054 13.9 2.3 0.7 10.3 1.1 2.5 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF948 PF06103.11 gi|119719879|ref|YP_920374.1| - 0.069 13.4 0.1 0.14 12.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Mod_r PF07200.13 gi|119719879|ref|YP_920374.1| - 0.08 13.1 1.4 0.11 12.6 1.4 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein COG2 PF06148.11 gi|119719879|ref|YP_920374.1| - 0.085 12.9 2.2 0.17 12.0 2.2 1.6 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 PilJ PF13675.6 gi|119719879|ref|YP_920374.1| - 0.1 12.6 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term Atg14 PF10186.9 gi|119719879|ref|YP_920374.1| - 0.11 11.5 0.5 0.14 11.2 0.5 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Cnn_1N PF07989.11 gi|119719879|ref|YP_920374.1| - 0.13 12.5 2.3 0.26 11.5 1.6 2.0 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 Yuri_gagarin PF15934.5 gi|119719879|ref|YP_920374.1| - 0.2 11.5 3.6 0.25 11.1 3.6 1.2 1 0 0 1 1 1 0 Yuri gagarin SpecificRecomb PF10136.9 gi|119719879|ref|YP_920374.1| - 0.24 9.7 3.1 0.32 9.3 3.1 1.1 1 0 0 1 1 1 0 Site-specific recombinase APG6_N PF17675.1 gi|119719879|ref|YP_920374.1| - 0.53 10.8 7.0 1.1 9.8 7.0 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF5401 PF17380.2 gi|119719879|ref|YP_920374.1| - 0.64 8.0 8.0 0.8 7.7 8.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) PaREP1 PF05942.11 gi|119719880|ref|YP_920375.1| - 6.4e-37 126.0 7.7 9.8e-37 125.4 7.7 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|119719880|ref|YP_920375.1| - 0.0061 16.6 0.2 0.013 15.6 0.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF357) HEPN PF05168.14 gi|119719880|ref|YP_920375.1| - 0.013 15.6 4.3 0.04 14.1 4.3 1.9 1 1 0 1 1 1 0 HEPN domain ParE_toxin PF05016.15 gi|119719880|ref|YP_920375.1| - 0.054 14.1 1.4 0.28 11.8 1.4 2.0 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE DUF3597 PF12200.8 gi|119719880|ref|YP_920375.1| - 0.066 13.8 0.1 0.12 12.9 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3597) Ribosomal_S30AE PF02482.19 gi|119719880|ref|YP_920375.1| - 0.13 13.1 0.2 0.26 12.1 0.1 1.7 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Fe_dep_repress PF01325.19 gi|119719881|ref|YP_920376.1| - 1.1e-21 76.7 2.7 2.8e-21 75.4 0.6 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|119719881|ref|YP_920376.1| - 5.4e-13 48.8 0.1 1.3e-12 47.6 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|119719881|ref|YP_920376.1| - 3.3e-08 33.3 0.0 8.3e-08 32.0 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.10 gi|119719881|ref|YP_920376.1| - 7.1e-06 25.7 0.0 1.4e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|119719881|ref|YP_920376.1| - 3.2e-05 24.3 0.2 7.5e-05 23.1 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|119719881|ref|YP_920376.1| - 9.4e-05 22.3 0.0 0.00022 21.1 0.0 1.7 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|119719881|ref|YP_920376.1| - 0.00042 20.0 0.1 0.043 13.6 0.0 2.8 3 0 0 3 3 3 1 LexA DNA binding domain Rrf2 PF02082.20 gi|119719881|ref|YP_920376.1| - 0.00044 20.5 0.1 0.00091 19.5 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|119719881|ref|YP_920376.1| - 0.00078 19.0 0.1 0.0024 17.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|119719881|ref|YP_920376.1| - 0.001 18.9 0.2 0.0031 17.4 0.2 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|119719881|ref|YP_920376.1| - 0.0013 18.5 0.0 0.0047 16.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_micro PF17007.5 gi|119719881|ref|YP_920376.1| - 0.0028 16.5 0.4 0.0034 16.3 0.4 1.1 1 0 0 1 1 1 1 HTH-like DUF4423 PF14394.6 gi|119719881|ref|YP_920376.1| - 0.0041 16.8 0.7 0.13 11.9 0.0 2.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|119719881|ref|YP_920376.1| - 0.006 16.5 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AAA_assoc_C PF09821.9 gi|119719881|ref|YP_920376.1| - 0.019 15.5 0.1 0.032 14.8 0.1 1.6 1 1 0 1 1 1 0 C-terminal AAA-associated domain DUF2250 PF10007.9 gi|119719881|ref|YP_920376.1| - 0.022 14.9 0.3 0.043 13.9 0.3 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.6 gi|119719881|ref|YP_920376.1| - 0.035 14.1 0.0 0.083 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|119719881|ref|YP_920376.1| - 0.036 14.2 0.2 0.3 11.2 0.0 2.6 3 1 0 3 3 3 0 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|119719881|ref|YP_920376.1| - 0.042 14.0 0.2 0.11 12.7 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator, AbiEi antitoxin UPF0302 PF08864.10 gi|119719881|ref|YP_920376.1| - 0.046 13.8 0.1 0.081 13.0 0.1 1.3 1 0 0 1 1 1 0 UPF0302 domain HrcA_DNA-bdg PF03444.15 gi|119719881|ref|YP_920376.1| - 0.053 13.2 0.3 2.6 7.7 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_23 PF13384.6 gi|119719881|ref|YP_920376.1| - 0.056 13.2 0.1 0.35 10.7 0.0 2.4 2 1 1 3 3 2 0 Homeodomain-like domain Rio2_N PF09202.11 gi|119719881|ref|YP_920376.1| - 0.063 13.5 0.2 0.22 11.8 0.1 1.9 2 0 0 2 2 2 0 Rio2, N-terminal HTH_10 PF04967.12 gi|119719881|ref|YP_920376.1| - 0.086 12.7 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain DUF1848 PF08902.11 gi|119719881|ref|YP_920376.1| - 0.095 12.4 0.1 0.099 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) HTH_45 PF14947.6 gi|119719881|ref|YP_920376.1| - 0.095 12.7 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix MerR PF00376.23 gi|119719881|ref|YP_920376.1| - 0.12 12.1 0.1 1.5 8.6 0.1 2.3 1 1 0 1 1 1 0 MerR family regulatory protein FeoA PF04023.14 gi|119719882|ref|YP_920377.1| - 9.8e-17 61.0 0.1 1.2e-16 60.7 0.1 1.1 1 0 0 1 1 1 1 FeoA domain FeoA PF04023.14 gi|119719883|ref|YP_920378.1| - 2.8e-20 72.3 0.4 3.1e-20 72.2 0.4 1.0 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|119719884|ref|YP_920379.1| - 6.3e-66 220.7 0.8 1.2e-65 219.8 0.8 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|119719884|ref|YP_920379.1| - 9.8e-45 151.4 14.6 1.5e-31 109.0 1.3 3.1 3 0 0 3 3 3 2 Nucleoside recognition FeoB_C PF07664.12 gi|119719884|ref|YP_920379.1| - 1.1e-17 63.5 4.2 1.1e-17 63.5 4.2 2.8 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|119719884|ref|YP_920379.1| - 1.3e-17 64.1 2.2 1.3e-17 64.1 2.2 2.1 2 0 0 2 2 2 1 FeoB cytosolic helical domain MMR_HSR1 PF01926.23 gi|119719884|ref|YP_920379.1| - 1.4e-17 63.8 0.1 2.8e-17 62.8 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|119719884|ref|YP_920379.1| - 0.00013 21.5 0.0 0.00024 20.6 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|119719884|ref|YP_920379.1| - 0.0016 18.4 0.7 0.01 15.7 0.1 2.1 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU PF00009.27 gi|119719884|ref|YP_920379.1| - 0.019 14.5 0.7 0.052 13.1 0.7 1.8 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain DUF2634 PF10934.8 gi|119719884|ref|YP_920379.1| - 0.05 13.7 0.8 0.099 12.8 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) MnmE_helical PF12631.7 gi|119719884|ref|YP_920379.1| - 0.085 13.0 0.0 0.21 11.8 0.0 1.6 1 1 0 1 1 1 0 MnmE helical domain Costars PF14705.6 gi|119719884|ref|YP_920379.1| - 0.27 11.4 0.9 2.2 8.5 0.1 2.6 3 0 0 3 3 3 0 Costars DUF1827 PF08860.10 gi|119719886|ref|YP_920381.1| - 0.13 12.6 1.9 0.35 11.1 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1827) TBK1_CCD1 PF18394.1 gi|119719887|ref|YP_920382.1| - 0.0028 17.3 0.2 0.0047 16.5 0.3 1.4 1 1 1 2 2 2 1 TANK-binding kinase 1 coiled-coil domain 1 ADIP PF11559.8 gi|119719887|ref|YP_920382.1| - 0.013 15.6 0.4 0.016 15.3 0.4 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding GAS PF13851.6 gi|119719887|ref|YP_920382.1| - 0.026 13.9 1.2 0.031 13.6 1.2 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding ABC_tran_CTD PF16326.5 gi|119719887|ref|YP_920382.1| - 0.035 14.4 6.4 0.085 13.1 6.4 1.7 1 1 0 1 1 1 0 ABC transporter C-terminal domain TPR_MLP1_2 PF07926.12 gi|119719887|ref|YP_920382.1| - 0.041 14.0 1.1 0.056 13.5 1.1 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Med9 PF07544.13 gi|119719887|ref|YP_920382.1| - 0.042 13.9 1.3 0.066 13.3 1.3 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 SlyX PF04102.12 gi|119719887|ref|YP_920382.1| - 0.048 14.3 1.7 0.089 13.4 1.7 1.6 1 1 0 1 1 1 0 SlyX DUF1192 PF06698.11 gi|119719887|ref|YP_920382.1| - 0.056 13.5 3.2 0.056 13.5 3.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Atg14 PF10186.9 gi|119719887|ref|YP_920382.1| - 0.057 12.5 0.1 0.058 12.5 0.1 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|119719887|ref|YP_920382.1| - 0.058 12.3 1.4 0.068 12.0 1.4 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein XhlA PF10779.9 gi|119719887|ref|YP_920382.1| - 0.06 13.5 1.9 0.1 12.8 1.9 1.3 1 0 0 1 1 1 0 Haemolysin XhlA Fmp27_WPPW PF10359.9 gi|119719887|ref|YP_920382.1| - 0.073 11.9 0.2 0.077 11.8 0.2 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Spc24 PF08286.11 gi|119719887|ref|YP_920382.1| - 0.087 13.1 1.7 0.096 12.9 1.7 1.3 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 BMFP PF04380.13 gi|119719887|ref|YP_920382.1| - 0.1 13.1 2.6 0.1 13.1 2.6 2.0 3 0 0 3 3 2 0 Membrane fusogenic activity KELK PF15796.5 gi|119719887|ref|YP_920382.1| - 0.12 12.9 6.6 0.57 10.7 1.6 2.2 1 1 1 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase LPD29 PF18847.1 gi|119719887|ref|YP_920382.1| - 0.14 13.1 0.1 0.39 11.7 0.0 1.8 2 0 0 2 2 2 0 Large polyvalent protein associated domain 29 HalX PF08663.10 gi|119719887|ref|YP_920382.1| - 0.2 12.0 7.0 4.8 7.6 2.8 2.4 2 1 0 2 2 2 0 HalX domain APG6_N PF17675.1 gi|119719887|ref|YP_920382.1| - 0.23 12.0 3.6 0.29 11.7 3.6 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region DivIC PF04977.15 gi|119719887|ref|YP_920382.1| - 0.32 10.8 5.0 2.6 7.9 5.0 2.1 1 1 0 1 1 1 0 Septum formation initiator Bcr-Abl_Oligo PF09036.10 gi|119719887|ref|YP_920382.1| - 0.46 10.5 3.6 0.39 10.8 1.3 1.9 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain CCDC-167 PF15188.6 gi|119719887|ref|YP_920382.1| - 0.47 10.8 6.3 0.85 10.0 6.3 1.7 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 PspB PF06667.12 gi|119719887|ref|YP_920382.1| - 0.67 10.0 5.1 12 6.0 2.2 2.2 1 1 1 2 2 2 0 Phage shock protein B Val_tRNA-synt_C PF10458.9 gi|119719887|ref|YP_920382.1| - 0.71 10.2 6.9 0.31 11.3 3.9 2.0 2 1 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm DUF4140 PF13600.6 gi|119719887|ref|YP_920382.1| - 1.9 9.0 4.8 6.1 7.3 4.8 1.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) AbiEii PF08843.11 gi|119719888|ref|YP_920383.1| - 6.4e-05 23.0 1.2 0.00012 22.1 1.2 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system DUF2204 PF09970.9 gi|119719888|ref|YP_920383.1| - 0.0012 18.5 2.2 0.024 14.3 2.2 2.8 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.6 gi|119719888|ref|YP_920383.1| - 0.0025 17.5 0.5 0.0059 16.3 0.5 1.6 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase CoA_binding_2 PF13380.6 gi|119719888|ref|YP_920383.1| - 0.035 14.6 0.3 0.1 13.1 0.2 1.9 1 1 1 2 2 2 0 CoA binding domain DUF1156 PF06634.12 gi|119719890|ref|YP_920385.1| - 4e-10 39.7 0.0 9.8e-10 38.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) UPF0020 PF01170.18 gi|119719890|ref|YP_920385.1| - 5.8e-07 29.4 0.0 0.0039 16.9 0.0 2.7 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|119719890|ref|YP_920385.1| - 1.4e-05 24.9 0.0 0.056 13.1 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|119719890|ref|YP_920385.1| - 0.018 14.7 0.1 0.1 12.2 0.0 2.1 3 0 0 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|119719890|ref|YP_920385.1| - 0.11 12.2 0.0 11 5.6 0.0 2.6 2 0 0 2 2 2 0 DNA methylase DUF499 PF04465.12 gi|119719891|ref|YP_920386.1| - 6.1e-06 24.3 0.7 0.00029 18.8 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF499) PS-DH PF14765.6 gi|119719891|ref|YP_920386.1| - 0.16 11.1 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 Polyketide synthase dehydratase Helicase_C PF00271.31 gi|119719893|ref|YP_920388.1| - 1.3e-15 57.7 0.0 3.6e-15 56.3 0.0 1.8 1 1 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|119719893|ref|YP_920388.1| - 2e-15 56.4 0.5 4.7e-14 51.9 0.1 2.6 1 1 1 2 2 2 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|119719893|ref|YP_920388.1| - 9.1e-09 35.5 0.0 2.6e-08 34.1 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3883 PF13020.6 gi|119719893|ref|YP_920388.1| - 6.1e-05 23.0 0.0 0.00027 20.9 0.0 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) PDDEXK_5 PF11645.8 gi|119719893|ref|YP_920388.1| - 9.2e-05 22.4 0.1 0.00024 21.1 0.1 1.7 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease DEAD PF00270.29 gi|119719893|ref|YP_920388.1| - 0.0047 16.7 0.0 0.079 12.7 0.0 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase Flavi_DEAD PF07652.14 gi|119719893|ref|YP_920388.1| - 0.07 13.1 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Flavivirus DEAD domain Peptidase_M48 PF01435.18 gi|119719894|ref|YP_920389.1| - 5.9e-07 29.5 0.4 2e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M48 SPC12 PF06645.13 gi|119719894|ref|YP_920389.1| - 0.67 10.1 3.9 2 8.6 3.9 1.8 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) AAA_31 PF13614.6 gi|119719895|ref|YP_920390.1| - 1.8e-26 93.1 0.0 7.1e-26 91.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|119719895|ref|YP_920390.1| - 4.7e-13 49.3 0.0 7e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|119719895|ref|YP_920390.1| - 6e-06 25.9 0.3 9.7e-06 25.2 0.3 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|119719895|ref|YP_920390.1| - 0.00011 21.8 0.1 0.00056 19.4 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|119719895|ref|YP_920390.1| - 0.00023 20.4 1.2 0.00026 20.3 0.2 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|119719895|ref|YP_920390.1| - 0.00025 20.6 0.0 0.0012 18.4 0.0 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|119719895|ref|YP_920390.1| - 0.00038 19.8 0.1 0.032 13.5 0.2 2.3 2 0 0 2 2 2 1 VirC1 protein MipZ PF09140.11 gi|119719895|ref|YP_920390.1| - 0.028 13.7 0.2 0.046 13.0 0.2 1.3 1 0 0 1 1 1 0 ATPase MipZ AAA_25 PF13481.6 gi|119719895|ref|YP_920390.1| - 0.058 13.0 0.3 0.12 12.0 0.3 1.5 1 0 0 1 1 1 0 AAA domain PRAS PF15798.5 gi|119719895|ref|YP_920390.1| - 0.13 12.8 0.0 0.24 12.0 0.0 1.4 1 0 0 1 1 1 0 Proline-rich AKT1 substrate 1 NERD PF08378.11 gi|119719896|ref|YP_920391.1| - 0.076 13.5 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain DUF3782 PF12644.7 gi|119719897|ref|YP_920392.1| - 1.1e-24 86.3 2.6 1.1e-24 86.3 2.6 4.6 1 1 2 3 3 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|119719897|ref|YP_920392.1| - 2e-24 85.3 0.0 4.3e-24 84.2 0.0 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Snapin_Pallidin PF14712.6 gi|119719897|ref|YP_920392.1| - 2.4e-06 27.9 16.1 0.18 12.3 1.3 5.4 1 1 5 6 6 6 1 Snapin/Pallidin KASH_CCD PF14662.6 gi|119719897|ref|YP_920392.1| - 3.6e-06 26.9 23.3 0.0003 20.7 17.2 2.4 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH YabA PF06156.13 gi|119719897|ref|YP_920392.1| - 3.1e-05 24.6 16.6 0.084 13.5 0.9 3.4 1 1 2 3 3 3 2 Initiation control protein YabA CENP-F_leu_zip PF10473.9 gi|119719897|ref|YP_920392.1| - 4.5e-05 23.5 29.1 0.0023 18.0 13.1 2.3 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Mod_r PF07200.13 gi|119719897|ref|YP_920392.1| - 6.3e-05 23.1 19.6 0.022 14.8 4.8 2.4 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein TMF_DNA_bd PF12329.8 gi|119719897|ref|YP_920392.1| - 7.8e-05 22.6 29.1 0.14 12.1 7.9 3.9 1 1 4 5 5 5 4 TATA element modulatory factor 1 DNA binding LPP PF04728.13 gi|119719897|ref|YP_920392.1| - 0.00013 22.3 0.1 17 5.9 0.0 4.9 1 1 5 6 6 6 0 Lipoprotein leucine-zipper ZapB PF06005.12 gi|119719897|ref|YP_920392.1| - 0.00023 21.5 41.7 0.29 11.6 7.7 4.4 1 1 3 4 4 4 2 Cell division protein ZapB DUF4709 PF15821.5 gi|119719897|ref|YP_920392.1| - 0.00057 20.1 6.7 0.27 11.5 0.8 3.8 1 1 4 5 5 5 1 Domain of unknown function (DUF4709) DUF1664 PF07889.12 gi|119719897|ref|YP_920392.1| - 0.00059 19.9 7.7 0.081 13.0 1.6 2.6 1 1 0 2 2 2 2 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|119719897|ref|YP_920392.1| - 0.00059 20.4 42.6 0.11 13.0 14.6 3.2 1 1 3 4 4 4 2 Apg6 coiled-coil region bZIP_1 PF00170.21 gi|119719897|ref|YP_920392.1| - 0.00065 19.7 23.0 1 9.5 4.3 4.7 1 1 3 4 4 4 2 bZIP transcription factor JAKMIP_CC3 PF16034.5 gi|119719897|ref|YP_920392.1| - 0.0015 18.5 33.9 0.3 11.0 10.2 3.1 1 1 2 3 3 3 2 JAKMIP CC3 domain ATP-synt_10 PF05176.14 gi|119719897|ref|YP_920392.1| - 0.0016 17.8 2.6 0.12 11.6 0.1 2.7 1 1 1 2 2 2 1 ATP10 protein SKA2 PF16740.5 gi|119719897|ref|YP_920392.1| - 0.0017 18.1 11.5 0.14 11.9 1.3 3.6 1 1 2 4 4 4 3 Spindle and kinetochore-associated protein 2 PI3K_P85_iSH2 PF16454.5 gi|119719897|ref|YP_920392.1| - 0.0018 17.9 16.3 0.061 12.9 10.7 2.3 1 1 1 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain FapA PF03961.13 gi|119719897|ref|YP_920392.1| - 0.0028 16.4 11.7 0.049 12.2 3.1 2.1 1 1 1 2 2 2 2 Flagellar Assembly Protein A DUF2205 PF10224.9 gi|119719897|ref|YP_920392.1| - 0.0033 17.4 17.1 0.057 13.4 3.0 3.6 1 1 3 4 4 4 2 Short coiled-coil protein Sec34 PF04136.15 gi|119719897|ref|YP_920392.1| - 0.0036 17.2 4.2 1.3 8.9 0.3 3.0 1 1 2 3 3 3 1 Sec34-like family DUF2353 PF09789.9 gi|119719897|ref|YP_920392.1| - 0.0043 16.5 16.8 0.18 11.1 4.4 2.2 1 1 1 2 2 2 2 Uncharacterized coiled-coil protein (DUF2353) Tektin PF03148.14 gi|119719897|ref|YP_920392.1| - 0.0053 15.6 18.4 0.031 13.0 1.1 4.0 1 1 4 5 5 5 3 Tektin family zf-C4H2 PF10146.9 gi|119719897|ref|YP_920392.1| - 0.0056 17.0 13.5 0.14 12.4 3.6 2.1 1 1 1 2 2 2 2 Zinc finger-containing protein TelA PF05816.11 gi|119719897|ref|YP_920392.1| - 0.012 14.7 10.4 0.75 8.8 0.5 3.2 1 1 2 3 3 3 0 Toxic anion resistance protein (TelA) DUF724 PF05266.14 gi|119719897|ref|YP_920392.1| - 0.013 15.4 17.5 0.21 11.4 4.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Seryl_tRNA_N PF02403.22 gi|119719897|ref|YP_920392.1| - 0.013 15.7 19.5 0.15 12.3 7.8 2.8 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF16 PF01519.16 gi|119719897|ref|YP_920392.1| - 0.016 15.7 15.2 1.1 9.7 1.5 3.7 1 1 2 3 3 3 0 Protein of unknown function DUF16 COG5 PF10392.9 gi|119719897|ref|YP_920392.1| - 0.022 15.0 0.5 0.52 10.5 0.1 2.4 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Latarcin PF10279.9 gi|119719897|ref|YP_920392.1| - 0.029 14.7 25.9 5.4 7.5 8.7 4.4 1 1 3 4 4 4 0 Latarcin precursor Lectin_N PF03954.14 gi|119719897|ref|YP_920392.1| - 0.037 13.8 2.9 1.2 8.9 0.5 2.4 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain DUF2968 PF11180.8 gi|119719897|ref|YP_920392.1| - 0.059 13.0 16.5 0.069 12.8 4.2 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) DUF948 PF06103.11 gi|119719897|ref|YP_920392.1| - 0.1 12.9 0.2 13 6.1 0.0 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) ApoLp-III PF07464.11 gi|119719897|ref|YP_920392.1| - 0.1 12.7 8.5 0.49 10.5 2.3 2.5 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) LOH1CR12 PF10158.9 gi|119719897|ref|YP_920392.1| - 0.11 12.5 0.1 6.4 6.8 0.0 2.5 1 1 1 2 2 2 0 Tumour suppressor protein Rbsn PF11464.8 gi|119719897|ref|YP_920392.1| - 0.15 11.8 20.7 0.76 9.6 0.8 5.7 3 2 1 5 5 5 0 Rabenosyn Rab binding domain Prominin PF05478.11 gi|119719897|ref|YP_920392.1| - 0.18 9.7 6.0 0.17 9.8 1.2 2.1 1 1 1 2 2 2 0 Prominin UCR_UQCRX_QCR9 PF05365.12 gi|119719897|ref|YP_920392.1| - 0.2 11.7 18.1 29 4.7 0.4 7.5 6 4 1 7 7 7 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like Dor1 PF04124.12 gi|119719897|ref|YP_920392.1| - 0.2 10.3 4.5 0.61 8.7 2.8 2.2 1 1 1 2 2 2 0 Dor1-like family DUF4201 PF13870.6 gi|119719897|ref|YP_920392.1| - 0.23 11.2 18.6 2.3 8.0 5.7 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DivIC PF04977.15 gi|119719897|ref|YP_920392.1| - 0.26 11.1 29.3 3 7.7 2.3 4.6 1 1 5 6 6 6 0 Septum formation initiator JIP_LZII PF16471.5 gi|119719897|ref|YP_920392.1| - 0.33 11.1 28.4 3.7 7.8 1.9 4.8 1 1 2 4 4 4 0 JNK-interacting protein leucine zipper II HAP1_N PF04849.13 gi|119719897|ref|YP_920392.1| - 0.36 10.0 25.5 1.2 8.3 9.7 2.1 1 1 1 2 2 2 0 HAP1 N-terminal conserved region TMPIT PF07851.13 gi|119719897|ref|YP_920392.1| - 0.39 9.9 13.1 0.56 9.4 3.6 2.1 1 1 1 2 2 2 0 TMPIT-like protein Nup88 PF10168.9 gi|119719897|ref|YP_920392.1| - 0.39 8.5 20.3 0.036 11.9 6.5 2.3 1 1 1 2 2 2 0 Nuclear pore component VPS11_C PF12451.8 gi|119719897|ref|YP_920392.1| - 0.5 10.6 17.6 11 6.4 0.1 7.4 6 2 3 9 9 7 0 Vacuolar protein sorting protein 11 C terminal DUF4061 PF13270.6 gi|119719897|ref|YP_920392.1| - 0.52 10.7 15.2 8.9 6.7 0.8 4.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4061) COG6 PF06419.11 gi|119719897|ref|YP_920392.1| - 0.61 8.2 5.5 2.3 6.3 0.5 2.1 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 Spc7 PF08317.11 gi|119719897|ref|YP_920392.1| - 0.73 8.7 22.3 4.9 6.0 4.0 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein EzrA PF06160.12 gi|119719897|ref|YP_920392.1| - 0.76 7.9 15.9 2 6.5 5.4 2.9 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA COG2 PF06148.11 gi|119719897|ref|YP_920392.1| - 0.82 9.8 14.9 14 5.8 2.3 4.0 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 RNase_E_G PF10150.9 gi|119719897|ref|YP_920392.1| - 0.96 8.8 6.3 4.2 6.7 4.6 2.0 1 1 1 2 2 2 0 Ribonuclease E/G family Cauli_AT PF03233.13 gi|119719897|ref|YP_920392.1| - 1 9.3 4.9 1.2e+02 2.5 4.9 2.5 1 1 0 1 1 1 0 Aphid transmission protein YkyA PF10368.9 gi|119719897|ref|YP_920392.1| - 1 9.0 8.7 0.66 9.6 5.7 1.6 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Uso1_p115_C PF04871.13 gi|119719897|ref|YP_920392.1| - 1.3 9.4 21.4 1.8e+04 -5.4 21.4 3.0 1 1 0 1 1 0 0 Uso1 / p115 like vesicle tethering protein, C terminal region ADIP PF11559.8 gi|119719897|ref|YP_920392.1| - 1.4 9.0 18.3 4.9 7.2 6.2 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding PTRF_SDPR PF15237.6 gi|119719897|ref|YP_920392.1| - 1.4 8.5 12.9 1.4 8.5 1.9 2.4 1 1 1 2 2 2 0 PTRF/SDPR family HALZ PF02183.18 gi|119719897|ref|YP_920392.1| - 1.4 9.2 24.7 2.5 8.4 1.1 6.0 2 1 5 7 7 7 0 Homeobox associated leucine zipper UPF0242 PF06785.11 gi|119719897|ref|YP_920392.1| - 1.5 8.9 23.3 4.2 7.4 9.6 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF4763 PF15960.5 gi|119719897|ref|YP_920392.1| - 1.6 8.0 15.4 1 8.6 3.1 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4763) DUF4446 PF14584.6 gi|119719897|ref|YP_920392.1| - 2.2 8.3 8.7 10 6.1 0.7 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) V_ATPase_I PF01496.19 gi|119719897|ref|YP_920392.1| - 2.3 6.0 9.8 37 2.0 9.8 2.0 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family GAS PF13851.6 gi|119719897|ref|YP_920392.1| - 2.4 7.5 26.7 1.1 8.6 10.7 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4795 PF16043.5 gi|119719897|ref|YP_920392.1| - 3.1 7.4 15.6 2.4 7.7 3.0 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Ntox28 PF15605.6 gi|119719897|ref|YP_920392.1| - 4.1 7.7 11.4 35 4.7 2.6 3.7 1 1 4 5 5 5 0 Bacterial toxin 28 Occludin_ELL PF07303.13 gi|119719897|ref|YP_920392.1| - 4.7 8.0 9.1 26 5.6 1.7 3.3 1 1 2 3 3 3 0 Occludin homology domain DUF4618 PF15397.6 gi|119719897|ref|YP_920392.1| - 4.8 6.5 17.3 3.2 7.1 1.0 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) FlaC_arch PF05377.11 gi|119719897|ref|YP_920392.1| - 5 7.6 10.8 59 4.2 0.1 4.4 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) DUF1394 PF07159.12 gi|119719897|ref|YP_920392.1| - 5.5 6.1 6.4 21 4.3 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1394) UPF0449 PF15136.6 gi|119719897|ref|YP_920392.1| - 5.5 7.5 17.6 8.4 6.9 4.3 3.4 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 ERM PF00769.19 gi|119719897|ref|YP_920392.1| - 6.2 6.6 32.7 6.8 6.4 16.5 2.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family TSNAXIP1_N PF15739.5 gi|119719897|ref|YP_920392.1| - 6.3 7.2 16.1 5.9 7.3 2.4 3.6 1 1 3 4 4 4 0 Translin-associated factor X-interacting N-terminus AAA_27 PF13514.6 gi|119719897|ref|YP_920392.1| - 7.4 6.1 11.3 2.5 7.6 1.6 2.9 1 1 1 2 2 2 0 AAA domain Taxilin PF09728.9 gi|119719897|ref|YP_920392.1| - 8.5 5.4 25.6 0.93 8.6 8.1 2.2 1 1 1 2 2 2 0 Myosin-like coiled-coil protein LURAP PF14854.6 gi|119719897|ref|YP_920392.1| - 9.7 6.2 6.9 3.7 7.5 2.4 2.2 1 1 1 2 2 2 0 Leucine rich adaptor protein YbjQ_1 PF01906.17 gi|119719898|ref|YP_920393.1| - 4.8e-34 117.1 4.6 5.4e-34 117.0 4.6 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|119719898|ref|YP_920393.1| - 0.023 15.0 0.2 0.08 13.3 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4156) NTP_transf_2 PF01909.23 gi|119719899|ref|YP_920394.1| - 2.4e-11 43.7 0.0 2.8e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119719899|ref|YP_920394.1| - 1.4e-05 25.1 0.0 1.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|119719899|ref|YP_920394.1| - 0.00037 20.7 0.0 0.00043 20.5 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm MdcG PF10620.9 gi|119719899|ref|YP_920394.1| - 0.032 14.0 0.2 0.054 13.3 0.2 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Adenyl_cycl_N PF12633.7 gi|119719899|ref|YP_920394.1| - 0.2 11.5 0.0 0.2 11.5 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.14 gi|119719900|ref|YP_920395.1| - 1.1e-19 70.7 1.2 1.4e-19 70.4 1.2 1.1 1 0 0 1 1 1 1 HEPN domain FlaC_arch PF05377.11 gi|119719900|ref|YP_920395.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) PLAC9 PF15205.6 gi|119719900|ref|YP_920395.1| - 0.18 12.2 0.9 0.31 11.4 0.1 1.8 2 0 0 2 2 2 0 Placenta-specific protein 9 DUF4129 PF13559.6 gi|119719900|ref|YP_920395.1| - 4.8 7.5 10.7 4.2e+02 1.3 10.7 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4129) Nitro_FeMo-Co PF02579.17 gi|119719903|ref|YP_920398.1| - 5.1e-14 52.4 0.0 6.1e-14 52.1 0.0 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.23 gi|119719904|ref|YP_920399.1| - 3.2e-16 59.6 0.0 4.7e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.27 gi|119719904|ref|YP_920399.1| - 5.6e-14 51.3 12.2 6.8e-07 28.8 3.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.9 gi|119719904|ref|YP_920399.1| - 5.2e-12 45.7 0.0 3.4e-06 26.7 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|119719904|ref|YP_920399.1| - 1.7e-07 31.3 0.0 0.004 17.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain Fer4_7 PF12838.7 gi|119719904|ref|YP_920399.1| - 2.8e-07 31.0 8.6 5.7e-07 30.0 8.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719904|ref|YP_920399.1| - 1.4e-06 28.1 11.8 0.0048 16.9 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119719904|ref|YP_920399.1| - 2.8e-06 28.2 4.6 0.021 15.8 2.0 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119719904|ref|YP_920399.1| - 1.2e-05 25.3 2.8 1.2e-05 25.3 2.8 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119719904|ref|YP_920399.1| - 1.7e-05 24.9 6.1 2.9e-05 24.2 6.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719904|ref|YP_920399.1| - 9.1e-05 22.5 6.8 0.0076 16.3 8.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119719904|ref|YP_920399.1| - 0.00067 19.6 11.3 0.059 13.5 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119719904|ref|YP_920399.1| - 0.0044 17.7 5.1 0.33 11.7 0.1 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain ArsA_ATPase PF02374.15 gi|119719904|ref|YP_920399.1| - 0.0062 15.8 0.4 0.011 15.0 0.4 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase GTP_EFTU PF00009.27 gi|119719904|ref|YP_920399.1| - 0.044 13.3 0.1 0.097 12.2 0.1 1.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain MipZ PF09140.11 gi|119719904|ref|YP_920399.1| - 0.071 12.4 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ Fer4_NifH PF00142.18 gi|119719904|ref|YP_920399.1| - 0.075 12.5 0.0 3.4 7.0 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF2791 PF10923.8 gi|119719904|ref|YP_920399.1| - 0.085 11.7 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) PhoH PF02562.16 gi|119719904|ref|YP_920399.1| - 0.099 12.1 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|119719904|ref|YP_920399.1| - 0.12 12.0 0.1 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|119719904|ref|YP_920399.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase Fer4_8 PF13183.6 gi|119719904|ref|YP_920399.1| - 0.26 11.7 7.8 3.3 8.2 2.5 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119719904|ref|YP_920399.1| - 0.85 10.2 6.9 9.1 6.9 1.6 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719904|ref|YP_920399.1| - 4.9 7.8 7.8 28 5.4 0.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CbiA PF01656.23 gi|119719905|ref|YP_920400.1| - 2.1e-18 66.6 0.0 3.1e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|119719905|ref|YP_920400.1| - 1.7e-15 57.2 0.0 1.7e-08 34.2 0.2 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|119719905|ref|YP_920400.1| - 1.1e-12 48.3 0.0 4.5e-08 33.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|119719905|ref|YP_920400.1| - 1.1e-09 38.1 0.0 0.00012 21.6 0.3 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4 PF00037.27 gi|119719905|ref|YP_920400.1| - 1.8e-09 37.0 14.9 8.3e-08 31.7 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119719905|ref|YP_920400.1| - 1.5e-08 34.4 11.0 6.6e-06 26.0 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119719905|ref|YP_920400.1| - 1.9e-08 33.9 11.4 2.1e-05 24.3 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain ArsA_ATPase PF02374.15 gi|119719905|ref|YP_920400.1| - 1.4e-07 31.0 0.4 1.1e-05 24.8 0.6 2.7 2 1 1 3 3 3 1 Anion-transporting ATPase Fer4_9 PF13187.6 gi|119719905|ref|YP_920400.1| - 1.7e-07 31.3 7.7 4.6e-07 29.9 7.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719905|ref|YP_920400.1| - 5.2e-06 26.5 11.6 0.0033 17.5 13.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119719905|ref|YP_920400.1| - 8.1e-06 25.9 6.5 1.3e-05 25.3 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119719905|ref|YP_920400.1| - 9.3e-06 26.5 8.8 0.023 15.6 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|119719905|ref|YP_920400.1| - 2.4e-05 24.8 25.4 0.00093 19.7 14.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119719905|ref|YP_920400.1| - 3.8e-05 24.0 2.9 0.012 16.0 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain MipZ PF09140.11 gi|119719905|ref|YP_920400.1| - 0.00033 20.0 0.0 0.0092 15.3 0.1 2.1 2 0 0 2 2 2 1 ATPase MipZ Fer4_17 PF13534.6 gi|119719905|ref|YP_920400.1| - 0.00057 20.4 7.3 0.032 14.8 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119719905|ref|YP_920400.1| - 0.0035 17.7 12.0 0.0095 16.4 2.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain GTP_EFTU PF00009.27 gi|119719905|ref|YP_920400.1| - 0.017 14.7 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain SRP54 PF00448.22 gi|119719905|ref|YP_920400.1| - 0.035 13.7 0.1 0.05 13.2 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|119719905|ref|YP_920400.1| - 0.096 12.1 0.0 2.2 7.6 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF853 PF05872.12 gi|119719905|ref|YP_920400.1| - 0.1 11.2 0.6 0.19 10.3 0.6 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_25 PF13481.6 gi|119719905|ref|YP_920400.1| - 0.11 12.1 1.1 0.44 10.1 0.2 2.2 2 0 0 2 2 2 0 AAA domain YAcAr PF10686.9 gi|119719905|ref|YP_920400.1| - 0.12 12.3 0.3 16 5.5 0.1 2.9 3 0 0 3 3 2 0 YspA, cpYpsA-related SLOG family CTP_synth_N PF06418.14 gi|119719905|ref|YP_920400.1| - 0.15 11.4 0.2 0.22 10.8 0.2 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus Fer4_15 PF13459.6 gi|119719905|ref|YP_920400.1| - 0.15 12.8 6.5 3.4 8.5 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_30 PF13604.6 gi|119719905|ref|YP_920400.1| - 0.17 11.6 2.6 0.75 9.5 0.4 2.4 2 1 0 2 2 2 0 AAA domain Fer4_3 PF12798.7 gi|119719905|ref|YP_920400.1| - 0.19 12.7 21.0 0.58 11.2 7.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ResIII PF04851.15 gi|119719905|ref|YP_920400.1| - 0.27 11.2 0.0 1.3 9.0 0.1 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|119719905|ref|YP_920400.1| - 0.32 10.2 0.2 0.47 9.6 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Fer4_18 PF13746.6 gi|119719905|ref|YP_920400.1| - 0.98 9.6 5.5 2.5 8.3 5.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119719905|ref|YP_920400.1| - 1.4 9.9 6.4 6.8 7.6 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719905|ref|YP_920400.1| - 7.8 7.1 15.2 0.91 10.1 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I NTP_transf_2 PF01909.23 gi|119719906|ref|YP_920401.1| - 3.3e-08 33.7 0.0 4.3e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119719906|ref|YP_920401.1| - 7.4e-07 29.2 0.0 1e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|119719906|ref|YP_920401.1| - 7.9e-05 22.5 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 Adenyl_cycl_N PF12633.7 gi|119719906|ref|YP_920401.1| - 0.18 11.7 0.0 0.25 11.2 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.14 gi|119719907|ref|YP_920402.1| - 2.6e-09 37.2 0.1 3.1e-09 37.0 0.1 1.1 1 0 0 1 1 1 1 HEPN domain HEPN_AbiV PF18728.1 gi|119719907|ref|YP_920402.1| - 0.014 15.6 0.1 0.023 14.8 0.1 1.4 2 0 0 2 2 2 0 AbiV KASH_CCD PF14662.6 gi|119719908|ref|YP_920403.1| - 1.2e-08 35.0 7.8 1.8e-08 34.5 7.8 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH JIP_LZII PF16471.5 gi|119719908|ref|YP_920403.1| - 4.8e-07 29.9 0.8 4.8e-07 29.9 0.8 2.3 2 1 0 2 2 2 1 JNK-interacting protein leucine zipper II ZapB PF06005.12 gi|119719908|ref|YP_920403.1| - 5.9e-07 29.8 12.2 9.3e-05 22.8 3.8 3.4 1 1 2 3 3 3 1 Cell division protein ZapB FPP PF05911.11 gi|119719908|ref|YP_920403.1| - 6e-07 28.1 3.4 7.9e-07 27.7 3.4 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil HALZ PF02183.18 gi|119719908|ref|YP_920403.1| - 1.8e-06 28.1 11.7 2.4e-05 24.5 3.6 3.6 2 1 1 3 3 3 1 Homeobox associated leucine zipper ATG16 PF08614.11 gi|119719908|ref|YP_920403.1| - 4.2e-06 27.1 11.8 7.2e-06 26.4 11.8 1.4 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Shugoshin_N PF07558.11 gi|119719908|ref|YP_920403.1| - 1.8e-05 24.5 2.9 0.0026 17.6 0.8 2.6 2 0 0 2 2 2 1 Shugoshin N-terminal coiled-coil region bZIP_1 PF00170.21 gi|119719908|ref|YP_920403.1| - 1.8e-05 24.7 10.9 0.0011 19.1 2.9 3.5 1 1 3 5 5 5 2 bZIP transcription factor DUF2353 PF09789.9 gi|119719908|ref|YP_920403.1| - 9e-05 22.0 2.9 0.00013 21.5 2.9 1.1 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) HAP1_N PF04849.13 gi|119719908|ref|YP_920403.1| - 0.00016 21.0 7.5 0.0003 20.1 6.3 1.8 1 1 1 2 2 2 1 HAP1 N-terminal conserved region JAKMIP_CC3 PF16034.5 gi|119719908|ref|YP_920403.1| - 0.00022 21.3 5.8 0.00022 21.3 5.8 1.6 1 1 1 2 2 1 1 JAKMIP CC3 domain CENP-F_leu_zip PF10473.9 gi|119719908|ref|YP_920403.1| - 0.00022 21.2 11.4 0.0018 18.3 4.7 2.3 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seryl_tRNA_N PF02403.22 gi|119719908|ref|YP_920403.1| - 0.00025 21.2 7.0 0.016 15.5 2.2 2.4 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain MAD PF05557.13 gi|119719908|ref|YP_920403.1| - 0.00027 19.5 1.5 0.00037 19.0 1.5 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein ADIP PF11559.8 gi|119719908|ref|YP_920403.1| - 0.0003 20.9 8.0 0.0083 16.2 2.0 2.2 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding Baculo_PEP_C PF04513.12 gi|119719908|ref|YP_920403.1| - 0.00033 20.7 0.6 0.00099 19.2 0.6 1.8 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.6 gi|119719908|ref|YP_920403.1| - 0.00045 19.6 9.1 0.0011 18.4 3.7 2.1 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding YabA PF06156.13 gi|119719908|ref|YP_920403.1| - 0.00054 20.6 2.6 0.015 16.0 2.5 2.9 1 1 0 1 1 1 1 Initiation control protein YabA SHE3 PF17078.5 gi|119719908|ref|YP_920403.1| - 0.00095 18.9 4.4 0.0018 18.0 4.1 1.6 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 BLOC1_2 PF10046.9 gi|119719908|ref|YP_920403.1| - 0.001 19.3 5.8 0.25 11.7 1.2 3.2 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lebercilin PF15619.6 gi|119719908|ref|YP_920403.1| - 0.0012 18.5 5.7 0.0027 17.4 5.7 1.5 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF4472 PF14739.6 gi|119719908|ref|YP_920403.1| - 0.0013 19.5 6.0 0.014 16.1 1.8 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4472) bZIP_2 PF07716.15 gi|119719908|ref|YP_920403.1| - 0.0014 18.7 12.6 0.0024 17.9 2.6 3.5 3 1 0 3 3 3 1 Basic region leucine zipper TPR_MLP1_2 PF07926.12 gi|119719908|ref|YP_920403.1| - 0.0014 18.7 15.5 0.002 18.2 11.8 2.1 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein DUF4201 PF13870.6 gi|119719908|ref|YP_920403.1| - 0.0016 18.2 2.3 0.0039 17.0 2.4 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) Fez1 PF06818.15 gi|119719908|ref|YP_920403.1| - 0.0028 18.1 8.1 0.005 17.3 8.1 1.4 1 1 0 1 1 1 1 Fez1 APG6_N PF17675.1 gi|119719908|ref|YP_920403.1| - 0.0029 18.1 15.4 0.031 14.8 15.4 2.1 1 1 0 1 1 1 1 Apg6 coiled-coil region CALCOCO1 PF07888.11 gi|119719908|ref|YP_920403.1| - 0.0031 16.5 7.8 0.017 14.1 7.6 1.8 1 1 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like TMF_TATA_bd PF12325.8 gi|119719908|ref|YP_920403.1| - 0.0032 17.7 5.1 0.0032 17.7 5.1 2.4 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding NEMO PF11577.8 gi|119719908|ref|YP_920403.1| - 0.0049 16.9 0.5 0.012 15.6 0.5 1.7 1 0 0 1 1 1 1 NF-kappa-B essential modulator NEMO KLRAQ PF10205.9 gi|119719908|ref|YP_920403.1| - 0.0054 17.0 2.5 0.037 14.3 2.0 2.2 1 1 1 2 2 2 1 Predicted coiled-coil domain-containing protein Spc7 PF08317.11 gi|119719908|ref|YP_920403.1| - 0.0054 15.7 9.0 1.1 8.0 2.3 2.1 1 1 0 1 1 1 1 Spc7 kinetochore protein STAT_alpha PF01017.20 gi|119719908|ref|YP_920403.1| - 0.0059 16.5 0.5 0.033 14.1 0.1 2.0 2 0 0 2 2 2 1 STAT protein, all-alpha domain DUF3450 PF11932.8 gi|119719908|ref|YP_920403.1| - 0.0075 15.6 2.6 0.0075 15.6 2.6 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) CENP-H PF05837.12 gi|119719908|ref|YP_920403.1| - 0.011 16.2 2.7 0.011 16.2 2.7 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Jnk-SapK_ap_N PF09744.9 gi|119719908|ref|YP_920403.1| - 0.011 16.0 8.5 0.054 13.7 8.5 1.9 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 ArAE_2 PF10334.9 gi|119719908|ref|YP_920403.1| - 0.012 15.5 0.2 0.022 14.6 0.2 1.5 1 1 0 1 1 1 0 Aromatic acid exporter family member 2 DUF3584 PF12128.8 gi|119719908|ref|YP_920403.1| - 0.013 13.1 4.1 0.018 12.6 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) APG17 PF04108.12 gi|119719908|ref|YP_920403.1| - 0.013 14.6 1.4 0.016 14.3 0.3 1.6 1 1 0 1 1 1 0 Autophagy protein Apg17 Tropomyosin_1 PF12718.7 gi|119719908|ref|YP_920403.1| - 0.014 15.5 10.1 0.045 13.9 4.9 2.1 1 1 1 2 2 2 0 Tropomyosin like TolA_bind_tri PF16331.5 gi|119719908|ref|YP_920403.1| - 0.014 15.4 2.0 0.5 10.5 0.2 2.8 1 1 1 2 2 2 0 TolA binding protein trimerisation DivIC PF04977.15 gi|119719908|ref|YP_920403.1| - 0.015 15.1 9.8 0.033 13.9 1.4 3.5 2 1 1 3 3 3 0 Septum formation initiator FlaC_arch PF05377.11 gi|119719908|ref|YP_920403.1| - 0.015 15.7 3.0 0.18 12.2 0.6 3.1 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) EzrA PF06160.12 gi|119719908|ref|YP_920403.1| - 0.016 13.4 3.0 0.18 9.9 1.8 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Fzo_mitofusin PF04799.13 gi|119719908|ref|YP_920403.1| - 0.017 14.7 2.5 0.095 12.3 0.1 2.3 1 1 1 2 2 2 0 fzo-like conserved region DUF1664 PF07889.12 gi|119719908|ref|YP_920403.1| - 0.018 15.1 0.6 0.21 11.7 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TSC22 PF01166.18 gi|119719908|ref|YP_920403.1| - 0.019 15.3 1.8 0.19 12.0 0.5 2.6 2 0 0 2 2 2 0 TSC-22/dip/bun family Filament PF00038.21 gi|119719908|ref|YP_920403.1| - 0.025 14.2 7.8 0.29 10.7 1.8 2.1 1 1 1 2 2 2 0 Intermediate filament protein Bap31_Bap29_C PF18035.1 gi|119719908|ref|YP_920403.1| - 0.027 14.4 8.1 2.5 8.2 0.1 3.5 1 1 2 3 3 3 0 Bap31/Bap29 cytoplasmic coiled-coil domain SLATT_4 PF18186.1 gi|119719908|ref|YP_920403.1| - 0.028 14.1 0.5 0.1 12.2 0.4 2.0 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 4 Golgin_A5 PF09787.9 gi|119719908|ref|YP_920403.1| - 0.028 13.9 3.0 0.039 13.4 3.0 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Macoilin PF09726.9 gi|119719908|ref|YP_920403.1| - 0.032 12.8 6.9 0.48 8.9 6.9 2.0 1 1 0 1 1 1 0 Macoilin family DUF724 PF05266.14 gi|119719908|ref|YP_920403.1| - 0.037 13.8 3.4 0.083 12.7 3.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF724) HOOK PF05622.12 gi|119719908|ref|YP_920403.1| - 0.039 12.1 6.4 0.34 9.0 6.6 1.9 1 1 0 1 1 1 0 HOOK protein Atg14 PF10186.9 gi|119719908|ref|YP_920403.1| - 0.047 12.8 10.6 0.0087 15.2 6.9 1.7 2 1 0 2 2 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Tropomyosin PF00261.20 gi|119719908|ref|YP_920403.1| - 0.068 12.5 6.8 0.11 11.8 6.8 1.4 1 0 0 1 1 1 0 Tropomyosin Leu_zip PF15294.6 gi|119719908|ref|YP_920403.1| - 0.071 12.6 4.5 0.26 10.7 4.6 1.8 1 1 0 1 1 1 0 Leucine zipper CCDC144C PF14915.6 gi|119719908|ref|YP_920403.1| - 0.079 12.1 7.3 0.24 10.5 7.3 1.5 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Sec34 PF04136.15 gi|119719908|ref|YP_920403.1| - 0.081 12.8 3.3 4.3 7.2 1.0 2.4 1 1 2 3 3 3 0 Sec34-like family DUF16 PF01519.16 gi|119719908|ref|YP_920403.1| - 0.082 13.4 0.9 13 6.3 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 Rootletin PF15035.6 gi|119719908|ref|YP_920403.1| - 0.087 12.8 8.1 0.22 11.5 8.2 1.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion IFT57 PF10498.9 gi|119719908|ref|YP_920403.1| - 0.095 11.6 1.9 0.22 10.5 1.9 1.7 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 ABC_tran_CTD PF16326.5 gi|119719908|ref|YP_920403.1| - 0.097 12.9 9.4 0.92 9.8 3.2 2.7 1 1 0 2 2 2 0 ABC transporter C-terminal domain DUF4795 PF16043.5 gi|119719908|ref|YP_920403.1| - 0.1 12.2 2.1 0.16 11.6 2.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) CorA PF01544.18 gi|119719908|ref|YP_920403.1| - 0.1 11.9 0.7 0.18 11.1 0.7 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TMF_DNA_bd PF12329.8 gi|119719908|ref|YP_920403.1| - 0.12 12.4 12.4 0.85 9.7 7.0 2.7 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Seadorna_VP6 PF07407.11 gi|119719908|ref|YP_920403.1| - 0.13 11.2 0.2 0.21 10.5 0.2 1.4 1 0 0 1 1 1 0 Seadornavirus VP6 protein UPF0242 PF06785.11 gi|119719908|ref|YP_920403.1| - 0.14 12.3 4.6 0.47 10.5 4.6 1.9 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus EMP24_GP25L PF01105.24 gi|119719908|ref|YP_920403.1| - 0.14 12.1 1.5 1.8 8.5 1.7 2.2 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD FapA PF03961.13 gi|119719908|ref|YP_920403.1| - 0.15 10.6 1.3 0.23 10.0 1.3 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A FAM76 PF16046.5 gi|119719908|ref|YP_920403.1| - 0.15 11.4 0.6 0.21 10.9 0.6 1.2 1 0 0 1 1 1 0 FAM76 protein CdvA PF18822.1 gi|119719908|ref|YP_920403.1| - 0.16 11.8 6.8 1.2 9.0 1.5 2.7 1 1 1 2 2 2 0 CdvA-like coiled-coil domain SOGA PF11365.8 gi|119719908|ref|YP_920403.1| - 0.17 13.1 7.5 1.7 9.8 3.9 2.7 1 1 2 3 3 2 0 Protein SOGA Mto2_bdg PF12808.7 gi|119719908|ref|YP_920403.1| - 0.17 12.2 4.0 0.81 10.0 4.0 2.3 1 0 0 1 1 1 0 Micro-tubular organiser Mto1 C-term Mto2-binding region Tup_N PF08581.10 gi|119719908|ref|YP_920403.1| - 0.17 12.2 1.3 2.3 8.6 0.2 2.8 2 1 0 2 2 2 0 Tup N-terminal PRKG1_interact PF15898.5 gi|119719908|ref|YP_920403.1| - 0.17 12.8 9.5 3 8.8 1.6 2.6 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Cep57_CLD_2 PF14197.6 gi|119719908|ref|YP_920403.1| - 0.18 11.9 14.8 0.039 14.0 8.5 2.5 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF4515 PF14988.6 gi|119719908|ref|YP_920403.1| - 0.19 11.6 4.6 0.13 12.1 2.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) DUF812 PF05667.11 gi|119719908|ref|YP_920403.1| - 0.2 10.5 5.2 0.46 9.3 5.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Flu_M1_C PF08289.11 gi|119719908|ref|YP_920403.1| - 0.21 11.8 1.2 0.44 10.8 0.3 1.9 1 1 1 2 2 1 0 Influenza Matrix protein (M1) C-terminal domain BRE1 PF08647.11 gi|119719908|ref|YP_920403.1| - 0.23 11.6 8.7 0.49 10.5 1.4 3.0 1 1 1 3 3 3 0 BRE1 E3 ubiquitin ligase Cnn_1N PF07989.11 gi|119719908|ref|YP_920403.1| - 0.23 11.6 4.7 0.14 12.4 1.4 2.1 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 DUF4763 PF15960.5 gi|119719908|ref|YP_920403.1| - 0.24 10.7 4.4 1.2 8.3 4.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) Exonuc_VII_L PF02601.15 gi|119719908|ref|YP_920403.1| - 0.24 10.9 6.5 0.34 10.4 6.5 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit PI3K_P85_iSH2 PF16454.5 gi|119719908|ref|YP_920403.1| - 0.26 10.9 5.3 1.9 8.1 5.3 2.2 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TMPIT PF07851.13 gi|119719908|ref|YP_920403.1| - 0.28 10.4 2.1 0.3 10.3 0.8 1.6 1 1 1 2 2 1 0 TMPIT-like protein DUF4686 PF15742.5 gi|119719908|ref|YP_920403.1| - 0.33 10.0 6.3 0.48 9.5 6.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) Spc24 PF08286.11 gi|119719908|ref|YP_920403.1| - 0.35 11.1 8.7 5 7.4 4.2 3.2 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 CtIP_N PF10482.9 gi|119719908|ref|YP_920403.1| - 0.38 10.8 3.2 0.89 9.6 2.6 1.9 1 1 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain Csm1_N PF18504.1 gi|119719908|ref|YP_920403.1| - 0.39 11.1 8.5 0.77 10.1 1.7 2.9 1 1 2 3 3 3 0 Csm1 N-terminal domain Occludin_ELL PF07303.13 gi|119719908|ref|YP_920403.1| - 0.41 11.4 1.8 12 6.6 0.3 2.4 1 1 1 2 2 2 0 Occludin homology domain FmiP_Thoc5 PF09766.9 gi|119719908|ref|YP_920403.1| - 0.42 9.9 6.8 2.8 7.1 0.6 2.1 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 Yuri_gagarin PF15934.5 gi|119719908|ref|YP_920403.1| - 0.42 10.4 3.1 1.1 9.1 3.1 1.7 1 1 0 1 1 1 0 Yuri gagarin MbeD_MobD PF04899.12 gi|119719908|ref|YP_920403.1| - 0.5 10.5 8.2 0.94 9.6 0.3 3.4 2 1 0 3 3 3 0 MbeD/MobD like ERM PF00769.19 gi|119719908|ref|YP_920403.1| - 0.53 10.1 14.4 2.3 7.9 14.2 1.9 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Mod_r PF07200.13 gi|119719908|ref|YP_920403.1| - 0.53 10.4 10.5 0.6 10.2 6.1 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Fmp27_WPPW PF10359.9 gi|119719908|ref|YP_920403.1| - 0.58 8.9 1.7 0.94 8.2 0.7 1.5 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain HMMR_C PF15908.5 gi|119719908|ref|YP_920403.1| - 0.7 10.1 4.5 1.2 9.3 1.3 2.5 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor C-terminal CREPT PF16566.5 gi|119719908|ref|YP_920403.1| - 0.73 10.0 5.0 2 8.6 2.5 2.2 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour DUF4164 PF13747.6 gi|119719908|ref|YP_920403.1| - 0.92 9.8 12.2 3.6 7.9 4.6 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Nup54 PF13874.6 gi|119719908|ref|YP_920403.1| - 1 9.4 9.0 9.7 6.3 9.0 2.2 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF4200 PF13863.6 gi|119719908|ref|YP_920403.1| - 1.6 9.2 6.8 2.3 8.6 1.7 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) K-box PF01486.17 gi|119719908|ref|YP_920403.1| - 1.8 8.8 6.6 18 5.6 2.6 3.2 1 1 2 3 3 3 0 K-box region DUF2205 PF10224.9 gi|119719908|ref|YP_920403.1| - 1.9 8.5 9.8 0.87 9.6 1.6 3.4 2 1 1 3 3 3 0 Short coiled-coil protein CLZ PF16526.5 gi|119719908|ref|YP_920403.1| - 2.6 8.5 9.5 8.9 6.8 1.8 3.2 1 1 3 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FliD_N PF02465.18 gi|119719908|ref|YP_920403.1| - 3 8.6 5.9 9.4 7.0 0.5 2.9 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Pox_A_type_inc PF04508.12 gi|119719908|ref|YP_920403.1| - 3.3 7.7 4.5 4.3 7.3 0.1 2.9 3 0 0 3 3 2 0 Viral A-type inclusion protein repeat SlyX PF04102.12 gi|119719908|ref|YP_920403.1| - 3.4 8.4 15.3 0.45 11.2 1.0 3.9 1 1 2 3 3 2 0 SlyX IFT20 PF14931.6 gi|119719908|ref|YP_920403.1| - 3.4 7.9 5.4 4.7 7.4 3.5 2.2 1 1 1 2 2 1 0 Intraflagellar transport complex B, subunit 20 Rho_Binding PF08912.11 gi|119719908|ref|YP_920403.1| - 4 8.3 14.1 3 8.7 0.3 4.1 2 1 2 4 4 4 0 Rho Binding BST2 PF16716.5 gi|119719908|ref|YP_920403.1| - 4.1 8.1 7.6 4.3 8.0 1.7 2.7 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 DUF4140 PF13600.6 gi|119719908|ref|YP_920403.1| - 4.1 7.9 11.2 81 3.7 8.8 3.1 1 1 1 2 2 1 0 N-terminal domain of unknown function (DUF4140) HAUS-augmin3 PF14932.6 gi|119719908|ref|YP_920403.1| - 4.2 6.9 13.1 12 5.4 13.0 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Striatin PF08232.12 gi|119719908|ref|YP_920403.1| - 4.5 7.9 7.8 13 6.3 7.8 1.8 1 1 0 1 1 1 0 Striatin family Uso1_p115_C PF04871.13 gi|119719908|ref|YP_920403.1| - 4.5 7.7 16.7 5.2e+02 1.0 16.7 2.6 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region LPP PF04728.13 gi|119719908|ref|YP_920403.1| - 5 7.6 14.9 15 6.0 2.5 4.4 2 1 1 3 3 2 0 Lipoprotein leucine-zipper GIT_CC PF16559.5 gi|119719908|ref|YP_920403.1| - 5.1 7.0 6.6 11 6.0 0.2 3.1 1 1 3 4 4 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor Nnf1 PF03980.14 gi|119719908|ref|YP_920403.1| - 5.2 7.5 11.8 4.5 7.7 6.1 3.2 1 1 2 3 3 3 0 Nnf1 Swi5 PF07061.11 gi|119719908|ref|YP_920403.1| - 7.7 6.7 6.7 7.6 6.7 2.2 3.0 1 1 1 2 2 2 0 Swi5 LURAP PF14854.6 gi|119719908|ref|YP_920403.1| - 8.7 6.3 9.6 1.3 9.0 4.6 2.2 2 1 1 3 3 2 0 Leucine rich adaptor protein DUF5320 PF17253.2 gi|119719908|ref|YP_920403.1| - 9.2 7.4 6.5 38 5.4 0.1 3.1 1 1 2 3 3 3 0 Family of unknown function (DUF5320) HhH-GPD PF00730.25 gi|119719909|ref|YP_920404.1| - 1.9e-19 70.1 0.0 3e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|119719909|ref|YP_920404.1| - 1.8e-10 40.1 0.1 9.8e-09 34.7 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|119719909|ref|YP_920404.1| - 0.00053 20.2 6.2 0.0012 19.1 6.2 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|119719909|ref|YP_920404.1| - 0.0031 18.1 0.0 3.8 8.2 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|119719909|ref|YP_920404.1| - 0.012 15.7 0.0 1.2 9.2 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif Cullin PF00888.22 gi|119719909|ref|YP_920404.1| - 0.041 12.5 0.0 0.051 12.2 0.0 1.0 1 0 0 1 1 1 0 Cullin family HHH_8 PF14716.6 gi|119719909|ref|YP_920404.1| - 0.064 13.6 0.1 0.28 11.6 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain GGDEF PF00990.21 gi|119719909|ref|YP_920404.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Diguanylate cyclase, GGDEF domain AAA_31 PF13614.6 gi|119719911|ref|YP_920406.1| - 5.1e-12 46.1 0.0 8.8e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|119719911|ref|YP_920406.1| - 1.3e-08 35.0 0.0 1.7e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|119719911|ref|YP_920406.1| - 0.0014 17.9 0.0 0.0043 16.3 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 gi|119719911|ref|YP_920406.1| - 0.0025 17.3 0.0 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_19 PF13245.6 gi|119719911|ref|YP_920406.1| - 0.022 15.1 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SurE PF01975.17 gi|119719912|ref|YP_920407.1| - 1.1e-45 155.9 0.1 1.3e-45 155.5 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE JSRP PF15312.6 gi|119719912|ref|YP_920407.1| - 0.0034 17.3 0.1 0.43 10.5 0.0 2.7 3 0 0 3 3 3 2 Junctional sarcoplasmic reticulum protein NTPase_1 PF03266.15 gi|119719913|ref|YP_920408.1| - 5.6e-58 195.6 0.0 6.6e-58 195.3 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|119719913|ref|YP_920408.1| - 4.6e-07 29.6 0.2 6.8e-07 29.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_5 PF07728.14 gi|119719913|ref|YP_920408.1| - 0.00017 21.6 0.3 0.17 11.9 0.1 2.2 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|119719913|ref|YP_920408.1| - 0.0016 18.8 0.4 0.018 15.4 0.5 2.1 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|119719913|ref|YP_920408.1| - 0.0031 16.5 3.5 0.0045 16.0 3.5 1.4 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|119719913|ref|YP_920408.1| - 0.0063 16.9 0.2 0.022 15.2 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119719913|ref|YP_920408.1| - 0.0076 16.5 0.6 0.04 14.2 0.3 2.3 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|119719913|ref|YP_920408.1| - 0.01 15.6 2.2 0.059 13.1 2.2 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|119719913|ref|YP_920408.1| - 0.011 15.4 0.2 0.36 10.5 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|119719913|ref|YP_920408.1| - 0.016 14.9 0.1 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|119719913|ref|YP_920408.1| - 0.02 14.6 0.0 0.039 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119719913|ref|YP_920408.1| - 0.028 14.0 0.2 0.044 13.4 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.14 gi|119719913|ref|YP_920408.1| - 0.032 14.1 0.1 0.053 13.4 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|119719913|ref|YP_920408.1| - 0.033 14.6 0.4 0.12 12.7 0.3 1.8 2 0 0 2 2 2 0 AAA ATPase domain Thymidylate_kin PF02223.17 gi|119719913|ref|YP_920408.1| - 0.087 12.5 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Thymidylate kinase Fe-ADH PF00465.19 gi|119719914|ref|YP_920409.1| - 5.6e-103 344.5 0.0 6.4e-103 344.4 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|119719914|ref|YP_920409.1| - 6.8e-15 55.5 0.0 1.5e-11 44.5 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase VirD1 PF07328.11 gi|119719914|ref|YP_920409.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 T-DNA border endonuclease VirD1 5-FTHF_cyc-lig PF01812.20 gi|119719915|ref|YP_920410.1| - 8e-31 107.3 0.0 9.8e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family TLC PF03219.14 gi|119719915|ref|YP_920410.1| - 0.01 14.6 0.0 0.014 14.2 0.0 1.1 1 0 0 1 1 1 0 TLC ATP/ADP transporter Polbeta PF18765.1 gi|119719916|ref|YP_920411.1| - 5e-08 32.9 0.0 9.1e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|119719916|ref|YP_920411.1| - 0.0054 17.0 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain HIT PF01230.23 gi|119719917|ref|YP_920412.1| - 5.6e-23 81.5 0.0 7.4e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|119719917|ref|YP_920412.1| - 2.5e-11 44.1 0.0 3.3e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|119719917|ref|YP_920412.1| - 1.1e-05 25.3 0.0 1.7e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 ATP-cone PF03477.16 gi|119719918|ref|YP_920413.1| - 4e-11 43.3 0.6 1.2e-10 41.8 0.3 1.9 2 0 0 2 2 2 1 ATP cone domain TcA_TcB_BD PF18276.1 gi|119719918|ref|YP_920413.1| - 0.098 11.7 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Tc toxin complex TcA C-terminal TcB-binding domain Radical_SAM PF04055.21 gi|119719919|ref|YP_920414.1| - 1.2e-12 48.5 0.0 3.7e-12 46.9 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|119719919|ref|YP_920414.1| - 6.2e-08 32.7 0.9 0.054 13.2 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) CHAT PF12770.7 gi|119719919|ref|YP_920414.1| - 0.017 14.5 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 CHAT domain DUF5131 PF07505.11 gi|119719919|ref|YP_920414.1| - 0.18 11.2 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF5131) GFO_IDH_MocA PF01408.22 gi|119719921|ref|YP_920416.1| - 3.3e-33 115.0 0.7 5.3e-33 114.4 0.7 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|119719921|ref|YP_920416.1| - 4e-09 36.5 0.0 8.4e-09 35.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.16 gi|119719921|ref|YP_920416.1| - 7.6e-05 23.3 0.6 0.00012 22.7 0.6 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|119719921|ref|YP_920416.1| - 0.00065 20.0 0.8 0.0018 18.6 0.8 1.9 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|119719921|ref|YP_920416.1| - 0.0013 19.4 1.3 0.1 13.3 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain 2-Hacid_dh_C PF02826.19 gi|119719921|ref|YP_920416.1| - 0.058 12.8 0.1 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DEAD PF00270.29 gi|119719922|ref|YP_920417.1| - 1.6e-27 96.4 0.0 4e-27 95.1 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119719922|ref|YP_920417.1| - 7.1e-21 74.6 0.0 1.2e-18 67.4 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|119719922|ref|YP_920417.1| - 3.4e-18 66.1 0.1 1.5e-17 64.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 gi|119719922|ref|YP_920417.1| - 2.5e-05 24.4 0.0 4.4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|119719922|ref|YP_920417.1| - 0.0048 17.2 0.0 0.042 14.2 0.0 2.5 3 0 0 3 3 3 1 AAA domain HypA PF01155.19 gi|119719922|ref|YP_920417.1| - 0.017 15.1 0.2 0.058 13.4 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4926 PF16277.5 gi|119719922|ref|YP_920417.1| - 0.03 13.7 0.0 0.11 11.9 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4926) Zn-ribbon_8 PF09723.10 gi|119719922|ref|YP_920417.1| - 0.1 12.7 0.8 0.2 11.8 0.2 1.8 2 0 0 2 2 2 0 Zinc ribbon domain TBP-binding PF09247.11 gi|119719923|ref|YP_920418.1| - 0.036 14.3 0.6 0.2 11.9 0.1 2.2 2 0 0 2 2 2 0 TATA box-binding protein binding FimA PF16970.5 gi|119719923|ref|YP_920418.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Type-1 fimbrial protein, A Pox_Ag35 PF03286.14 gi|119719923|ref|YP_920418.1| - 0.55 10.0 2.0 0.76 9.5 2.0 1.2 1 0 0 1 1 1 0 Pox virus Ag35 surface protein Ribosomal_S25 PF03297.15 gi|119719924|ref|YP_920419.1| - 4.1e-14 52.6 1.8 5.5e-14 52.2 1.8 1.2 1 0 0 1 1 1 1 S25 ribosomal protein PORR PF11955.8 gi|119719924|ref|YP_920419.1| - 6.8e-05 22.0 0.1 8e-05 21.7 0.1 1.1 1 0 0 1 1 1 1 Plant organelle RNA recognition domain EAP30 PF04157.16 gi|119719924|ref|YP_920419.1| - 0.0033 16.7 0.0 0.0038 16.5 0.0 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family TrmB PF01978.19 gi|119719924|ref|YP_920419.1| - 0.024 14.5 0.5 0.04 13.8 0.5 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cylicin_N PF15241.6 gi|119719924|ref|YP_920419.1| - 0.13 12.3 1.3 0.13 12.3 0.3 1.6 2 0 0 2 2 2 0 Cylicin N-terminus Rad51 PF08423.11 gi|119719925|ref|YP_920420.1| - 1.1e-96 323.0 0.0 1.4e-96 322.7 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|119719925|ref|YP_920420.1| - 1e-10 41.5 0.0 1.9e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|119719925|ref|YP_920420.1| - 2.3e-10 40.3 0.0 5.6e-10 39.0 0.0 1.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|119719925|ref|YP_920420.1| - 1.1e-06 28.3 0.0 2.2e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|119719925|ref|YP_920420.1| - 5.8e-06 26.8 1.7 9.7e-05 22.9 0.1 3.0 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|119719925|ref|YP_920420.1| - 2.3e-05 24.1 0.0 0.041 13.7 0.0 2.8 2 0 0 2 2 2 2 Fingers domain of DNA polymerase lambda PAXNEB PF05625.11 gi|119719925|ref|YP_920420.1| - 0.00097 18.4 1.8 0.038 13.1 0.3 2.2 1 1 1 2 2 2 1 PAXNEB protein AAA_22 PF13401.6 gi|119719925|ref|YP_920420.1| - 0.0059 16.9 0.1 0.029 14.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|119719925|ref|YP_920420.1| - 0.011 16.3 0.0 0.03 14.8 0.0 1.8 1 1 0 1 1 1 0 ABC transporter Cdd1 PF11731.8 gi|119719925|ref|YP_920420.1| - 0.021 15.0 0.0 0.045 14.0 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus AAA_24 PF13479.6 gi|119719925|ref|YP_920420.1| - 0.046 13.4 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain HHH PF00633.23 gi|119719925|ref|YP_920420.1| - 0.049 13.5 0.0 0.15 12.0 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|119719925|ref|YP_920420.1| - 0.13 12.6 0.2 0.78 10.0 0.0 2.4 2 1 0 3 3 3 0 Domain of unknown function (DUF4332) HTH_45 PF14947.6 gi|119719926|ref|YP_920421.1| - 0.096 12.7 0.0 0.33 11.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|119719927|ref|YP_920422.1| - 5.5e-06 25.9 0.0 0.039 13.5 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|119719927|ref|YP_920422.1| - 4.6e-05 23.2 0.0 0.0058 16.5 0.0 2.7 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|119719927|ref|YP_920422.1| - 0.0066 16.4 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|119719927|ref|YP_920422.1| - 0.021 14.6 0.2 0.11 12.4 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|119719927|ref|YP_920422.1| - 0.043 14.2 0.0 0.14 12.5 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.6 gi|119719927|ref|YP_920422.1| - 0.053 13.3 0.8 10 6.1 0.4 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|119719927|ref|YP_920422.1| - 0.058 13.4 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|119719927|ref|YP_920422.1| - 0.06 13.3 0.1 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|119719927|ref|YP_920422.1| - 0.13 12.0 0.2 0.36 10.7 0.2 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF4234 PF14018.6 gi|119719929|ref|YP_920424.1| - 7.3e-07 29.2 5.8 7.3e-07 29.2 5.8 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4234) Bax1-I PF01027.20 gi|119719929|ref|YP_920424.1| - 0.011 15.6 4.4 0.012 15.4 4.4 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4328 PF14219.6 gi|119719929|ref|YP_920424.1| - 0.23 11.0 3.6 0.38 10.3 3.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4328) PDDEXK_1 PF12705.7 gi|119719930|ref|YP_920425.1| - 0.0019 18.2 0.0 0.0021 18.0 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Rad51 PF08423.11 gi|119719931|ref|YP_920426.1| - 1.1e-67 228.0 0.0 1.3e-67 227.7 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|119719931|ref|YP_920426.1| - 1.4e-08 34.4 0.6 1.6e-07 30.9 0.6 2.2 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.6 gi|119719931|ref|YP_920426.1| - 1.1e-07 32.4 0.6 2.5e-07 31.2 0.2 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|119719931|ref|YP_920426.1| - 3.4e-07 30.0 0.0 5.3e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|119719931|ref|YP_920426.1| - 3.9e-06 26.5 0.0 5.4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein RNA_pol_A_CTD PF03118.15 gi|119719931|ref|YP_920426.1| - 0.0082 15.9 0.0 0.024 14.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain DnaB_C PF03796.15 gi|119719931|ref|YP_920426.1| - 0.0085 15.5 0.1 3.2 7.0 0.0 2.2 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|119719931|ref|YP_920426.1| - 0.073 13.3 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain HhH-GPD PF00730.25 gi|119719931|ref|YP_920426.1| - 0.088 13.3 0.0 0.16 12.5 0.0 1.5 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein AAA_24 PF13479.6 gi|119719931|ref|YP_920426.1| - 0.098 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF4332 PF14229.6 gi|119719931|ref|YP_920426.1| - 0.12 12.6 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Thymidylate_kin PF02223.17 gi|119719934|ref|YP_920429.1| - 3.6e-44 150.6 0.0 4.6e-44 150.3 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|119719934|ref|YP_920429.1| - 5.3e-09 36.5 0.0 6.8e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 gi|119719934|ref|YP_920429.1| - 1.6e-06 28.2 0.1 1.4e-05 25.1 0.1 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|119719934|ref|YP_920429.1| - 8.5e-05 22.7 0.0 0.00077 19.6 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|119719934|ref|YP_920429.1| - 0.00016 22.3 0.0 0.00097 19.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|119719934|ref|YP_920429.1| - 0.00019 21.9 3.0 0.16 12.4 0.0 3.1 3 1 1 4 4 4 2 AAA domain SKI PF01202.22 gi|119719934|ref|YP_920429.1| - 0.0039 17.3 0.3 0.06 13.5 0.1 2.2 2 0 0 2 2 2 1 Shikimate kinase SRP54 PF00448.22 gi|119719934|ref|YP_920429.1| - 0.0076 15.9 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|119719934|ref|YP_920429.1| - 0.011 15.5 0.0 0.032 14.0 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|119719934|ref|YP_920429.1| - 0.013 15.0 0.0 0.027 13.9 0.0 1.7 1 1 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.20 gi|119719934|ref|YP_920429.1| - 0.058 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.6 gi|119719934|ref|YP_920429.1| - 0.062 13.0 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain PLDc_2 PF13091.6 gi|119719935|ref|YP_920430.1| - 1.4e-23 83.2 0.6 1.8e-23 82.9 0.6 1.2 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.22 gi|119719935|ref|YP_920430.1| - 6.5e-06 26.1 0.4 1.6e-05 24.9 0.4 1.6 1 0 0 1 1 1 1 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 gi|119719935|ref|YP_920430.1| - 8.3e-06 25.5 0.2 1.1e-05 25.1 0.2 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 Regulator_TrmB PF11495.8 gi|119719935|ref|YP_920430.1| - 7.6e-05 22.0 0.4 0.0001 21.6 0.4 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF2663 PF10864.8 gi|119719936|ref|YP_920431.1| - 0.057 13.8 0.1 0.072 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2663) HMG_box PF00505.19 gi|119719936|ref|YP_920431.1| - 0.085 13.3 0.0 0.28 11.6 0.0 1.7 2 0 0 2 2 2 0 HMG (high mobility group) box DUF2614 PF11023.8 gi|119719936|ref|YP_920431.1| - 0.13 12.3 0.2 0.15 12.1 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain ThiP_synth PF10120.9 gi|119719937|ref|YP_920432.1| - 1.9e-37 128.4 0.1 4.8e-37 127.1 0.0 1.7 2 0 0 2 2 2 1 Thiamine-phosphate synthase AIRS_C PF02769.22 gi|119719937|ref|YP_920432.1| - 2e-11 44.3 0.5 1.2e-10 41.8 0.3 2.3 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|119719937|ref|YP_920432.1| - 8e-11 42.5 0.0 2.3e-10 41.0 0.0 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HEM4 PF02602.15 gi|119719937|ref|YP_920432.1| - 0.027 13.8 0.0 0.061 12.7 0.0 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD tRNA_SAD PF07973.14 gi|119719938|ref|YP_920433.1| - 4.1e-10 39.6 0.1 6.7e-10 38.9 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|119719938|ref|YP_920433.1| - 1.5e-07 30.4 0.0 2e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) LAL_C2 PF18603.1 gi|119719938|ref|YP_920433.1| - 0.14 12.4 0.6 1.1 9.4 0.2 2.6 3 0 0 3 3 3 0 L-amino acid ligase C-terminal domain 2 Methyltransf_23 PF13489.6 gi|119719939|ref|YP_920434.1| - 7.4e-10 38.9 0.0 9.7e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119719939|ref|YP_920434.1| - 1.5e-09 38.3 0.0 2.5e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119719939|ref|YP_920434.1| - 6.6e-05 23.6 0.0 0.00013 22.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119719939|ref|YP_920434.1| - 0.00034 21.3 0.0 0.00064 20.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF2059 PF09832.9 gi|119719939|ref|YP_920434.1| - 0.18 11.9 0.0 0.48 10.5 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2059) HypA PF01155.19 gi|119719940|ref|YP_920435.1| - 0.0014 18.6 0.1 0.0039 17.2 0.0 1.7 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|119719940|ref|YP_920435.1| - 0.01 15.5 0.6 3.4 7.5 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1610 PF07754.11 gi|119719940|ref|YP_920435.1| - 0.012 15.5 3.1 0.48 10.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Cys_rich_CPCC PF14206.6 gi|119719940|ref|YP_920435.1| - 0.017 14.9 0.5 0.029 14.2 0.5 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC PhnA_Zn_Ribbon PF08274.12 gi|119719940|ref|YP_920435.1| - 0.024 14.6 0.8 0.043 13.8 0.8 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn_ribbon_SprT PF17283.2 gi|119719940|ref|YP_920435.1| - 0.028 14.3 0.4 0.054 13.4 0.4 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|119719940|ref|YP_920435.1| - 0.035 13.6 1.2 0.065 12.8 1.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-Mss51 PF13824.6 gi|119719940|ref|YP_920435.1| - 0.048 13.8 3.2 2.5 8.3 0.1 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|119719940|ref|YP_920435.1| - 0.067 12.9 4.0 0.31 10.8 4.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.11 gi|119719940|ref|YP_920435.1| - 0.069 13.2 0.1 0.25 11.4 0.0 1.8 2 0 0 2 2 2 0 Zinc-ribbon containing domain DZR PF12773.7 gi|119719940|ref|YP_920435.1| - 0.091 12.8 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|119719940|ref|YP_920435.1| - 0.16 11.9 0.2 0.31 11.0 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|119719940|ref|YP_920435.1| - 0.37 10.3 8.2 7.2 6.2 1.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|119719940|ref|YP_920435.1| - 0.52 10.5 3.6 16 5.8 0.0 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119719940|ref|YP_920435.1| - 1.3 9.0 2.9 31 4.6 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|119719940|ref|YP_920435.1| - 3.7 7.7 6.4 5.9 7.1 0.1 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DNA_ligase_ZBD PF03119.16 gi|119719941|ref|YP_920436.1| - 0.00034 20.6 3.1 0.002 18.1 1.6 2.3 1 1 1 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|119719941|ref|YP_920436.1| - 0.00039 19.7 1.1 0.47 9.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119719941|ref|YP_920436.1| - 0.00094 18.8 2.6 0.87 9.4 0.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119719941|ref|YP_920436.1| - 0.0011 18.6 0.5 0.0023 17.5 0.5 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-Di19 PF05605.12 gi|119719941|ref|YP_920436.1| - 0.0029 17.8 0.5 0.63 10.4 0.0 2.4 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.7 gi|119719941|ref|YP_920436.1| - 0.018 15.0 0.6 0.03 14.3 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|119719941|ref|YP_920436.1| - 0.033 13.7 3.6 0.07 12.7 3.6 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Cys_rich_CPXG PF14255.6 gi|119719941|ref|YP_920436.1| - 0.034 14.1 2.4 3.9 7.5 0.2 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG Prok-RING_1 PF14446.6 gi|119719941|ref|YP_920436.1| - 0.06 13.3 0.7 0.095 12.6 0.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_7 PF02591.15 gi|119719941|ref|YP_920436.1| - 0.062 13.5 1.7 1.6 8.9 0.2 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-CHCC PF10276.9 gi|119719941|ref|YP_920436.1| - 0.071 13.2 3.4 1.1 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger domain zf-C2H2_4 PF13894.6 gi|119719941|ref|YP_920436.1| - 0.08 13.8 0.3 7.7 7.7 0.0 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-IS66 PF13005.7 gi|119719941|ref|YP_920436.1| - 0.11 13.0 0.3 11 6.5 0.0 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.11 gi|119719941|ref|YP_920436.1| - 0.11 12.5 0.4 0.19 11.7 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|119719941|ref|YP_920436.1| - 0.2 11.8 0.8 4.7 7.4 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|119719941|ref|YP_920436.1| - 0.39 10.9 4.6 1.7 8.8 0.2 2.8 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.26 gi|119719941|ref|YP_920436.1| - 0.44 11.1 1.4 4 8.1 0.1 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_9 PF14369.6 gi|119719941|ref|YP_920436.1| - 0.83 10.0 5.3 21 5.5 5.6 2.3 1 1 1 2 2 2 0 zinc-ribbon SRA PF18491.1 gi|119719942|ref|YP_920437.1| - 0.087 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 SET and RING associated domain Band_7_1 PF13421.6 gi|119719943|ref|YP_920438.1| - 3.5e-32 111.8 0.0 5.1e-32 111.3 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|119719943|ref|YP_920438.1| - 2.7e-23 82.9 0.0 3.4e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family UPF0547 PF10571.9 gi|119719943|ref|YP_920438.1| - 1.6e-19 69.6 15.1 7.2e-12 45.2 3.2 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|119719943|ref|YP_920438.1| - 1.4e-17 63.4 16.8 6.3e-13 48.5 8.6 1.7 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119719943|ref|YP_920438.1| - 5.1e-17 61.0 13.4 2.8e-09 36.4 3.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119719943|ref|YP_920438.1| - 6.8e-15 53.9 11.1 1.4e-07 30.7 1.5 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|119719943|ref|YP_920438.1| - 1.1e-09 38.9 2.8 0.0012 19.6 1.6 2.2 2 0 0 2 2 2 2 zinc-ribbon family DUF2116 PF09889.9 gi|119719943|ref|YP_920438.1| - 0.0025 17.7 4.6 0.038 14.0 0.2 2.3 1 1 1 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) HypA PF01155.19 gi|119719943|ref|YP_920438.1| - 0.0057 16.7 7.5 0.18 11.8 1.3 2.5 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|119719943|ref|YP_920438.1| - 0.016 15.2 4.7 1.9 8.6 7.1 2.4 2 1 1 3 3 2 0 zinc-ribbons DNA_RNApol_7kD PF03604.13 gi|119719943|ref|YP_920438.1| - 0.019 14.6 4.2 0.83 9.4 0.1 2.8 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.6 gi|119719943|ref|YP_920438.1| - 0.021 14.7 9.2 0.094 12.7 1.4 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-LITAF-like PF10601.9 gi|119719943|ref|YP_920438.1| - 0.033 14.4 1.3 0.033 14.4 1.3 3.2 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain zf_UBZ PF18439.1 gi|119719943|ref|YP_920438.1| - 0.036 13.7 9.2 0.74 9.5 0.6 3.5 1 1 3 4 4 4 0 Ubiquitin-Binding Zinc Finger DUF35_N PF12172.8 gi|119719943|ref|YP_920438.1| - 0.039 13.8 15.7 0.045 13.6 2.3 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_C2H2_6 PF18450.1 gi|119719943|ref|YP_920438.1| - 0.079 12.7 2.8 0.71 9.6 0.2 2.6 2 0 0 2 2 2 0 Zinc Finger domain zinc-ribbon_6 PF10005.9 gi|119719943|ref|YP_920438.1| - 0.085 13.5 2.1 8.3 7.2 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-CHY PF05495.12 gi|119719943|ref|YP_920438.1| - 0.11 13.0 5.0 2.8 8.5 3.6 2.2 1 1 1 2 2 2 0 CHY zinc finger Ribosomal_L32p PF01783.23 gi|119719943|ref|YP_920438.1| - 0.13 12.5 8.0 0.56 10.5 0.7 2.4 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-NADH-PPase PF09297.11 gi|119719943|ref|YP_920438.1| - 0.14 11.8 15.7 5 6.9 0.0 3.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119719943|ref|YP_920438.1| - 0.16 12.0 7.6 29 4.7 7.6 2.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC_2 PF13913.6 gi|119719943|ref|YP_920438.1| - 0.16 11.9 0.0 0.16 11.9 0.0 4.2 4 0 0 4 4 4 0 zinc-finger of a C2HC-type DHHC PF01529.20 gi|119719943|ref|YP_920438.1| - 0.21 11.7 4.4 4.9 7.3 0.5 2.2 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF3330 PF11809.8 gi|119719943|ref|YP_920438.1| - 0.31 11.1 8.9 1.8 8.7 1.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3330) Zn-ribbon_8 PF09723.10 gi|119719943|ref|YP_920438.1| - 0.36 11.0 17.0 1.7 8.8 1.6 3.6 2 1 1 3 3 3 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|119719943|ref|YP_920438.1| - 0.38 11.0 17.6 6.8 7.0 0.8 4.4 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf_C2H2_13 PF18508.1 gi|119719943|ref|YP_920438.1| - 0.44 10.2 1.6 0.91 9.2 0.1 2.2 2 0 0 2 2 2 0 Zinc finger domain YacG PF03884.14 gi|119719943|ref|YP_920438.1| - 1.4 8.7 12.9 2.6 7.8 1.4 2.5 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG NMD3 PF04981.13 gi|119719943|ref|YP_920438.1| - 1.5 8.2 3.0 7.7 5.9 3.0 2.0 1 1 0 1 1 1 0 NMD3 family Sgf11 PF08209.11 gi|119719943|ref|YP_920438.1| - 1.5 8.4 13.3 0.47 10.1 0.4 3.5 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-C3HC4_3 PF13920.6 gi|119719943|ref|YP_920438.1| - 1.5 8.7 11.9 0.51 10.2 1.6 3.0 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF4187 PF13821.6 gi|119719943|ref|YP_920438.1| - 1.6 8.5 7.1 18 5.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4187) IBR PF01485.21 gi|119719943|ref|YP_920438.1| - 1.9 8.8 9.1 23 5.3 5.9 2.3 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain PknG_rubred PF16919.5 gi|119719943|ref|YP_920438.1| - 1.9 8.6 11.3 4.4 7.5 8.4 2.8 1 1 1 2 2 1 0 Protein kinase G rubredoxin domain A2L_zn_ribbon PF08792.10 gi|119719943|ref|YP_920438.1| - 6.5 6.6 8.9 2.7 7.8 0.2 3.0 2 1 0 2 2 2 0 A2L zinc ribbon domain zf-MYND PF01753.18 gi|119719943|ref|YP_920438.1| - 7 6.8 10.6 1.1e+02 3.1 10.4 2.2 1 1 1 2 2 2 0 MYND finger YhfH PF14149.6 gi|119719943|ref|YP_920438.1| - 8.7 6.4 13.1 9.8 6.2 1.0 3.7 3 1 1 4 4 4 0 YhfH-like protein zf-tcix PF14952.6 gi|119719943|ref|YP_920438.1| - 9.1 6.0 17.1 2.1 8.0 3.0 3.1 1 1 2 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Lactate_perm PF02652.14 gi|119719946|ref|YP_920441.1| - 1.6e-36 126.2 43.0 2.3e-21 76.1 13.0 2.1 1 1 1 2 2 2 2 L-lactate permease MOZART2 PF12926.7 gi|119719946|ref|YP_920441.1| - 0.0039 16.8 0.1 0.0087 15.6 0.1 1.6 1 0 0 1 1 1 1 Mitotic-spindle organizing gamma-tubulin ring associated UbiA PF01040.18 gi|119719948|ref|YP_920443.1| - 6.8e-48 163.2 27.5 8.8e-48 162.8 27.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family TNFR_16_TM PF18422.1 gi|119719948|ref|YP_920443.1| - 0.22 11.5 2.1 0.84 9.7 2.1 2.0 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain E1-E2_ATPase PF00122.20 gi|119719948|ref|YP_920443.1| - 0.25 10.8 4.9 0.71 9.4 4.9 1.7 1 0 0 1 1 1 0 E1-E2 ATPase VSP PF03302.13 gi|119719948|ref|YP_920443.1| - 0.45 9.3 1.5 0.76 8.6 1.5 1.3 1 0 0 1 1 1 0 Giardia variant-specific surface protein Trypan_PARP PF05887.11 gi|119719948|ref|YP_920443.1| - 4.9 7.1 5.4 2.2 8.2 2.7 1.8 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) NUDIX PF00293.28 gi|119719949|ref|YP_920444.1| - 2.8e-16 59.7 0.7 3.4e-16 59.5 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain UbiA PF01040.18 gi|119719950|ref|YP_920445.1| - 3.5e-35 121.5 28.5 4.5e-35 121.2 25.7 2.0 1 1 1 2 2 2 2 UbiA prenyltransferase family PsbN PF02468.15 gi|119719950|ref|YP_920445.1| - 8.2 6.4 8.9 5.2 7.0 0.7 3.2 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) MFS_1 PF07690.16 gi|119719951|ref|YP_920446.1| - 6.9e-39 133.8 50.7 3.2e-29 101.9 20.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|119719951|ref|YP_920446.1| - 5.5e-09 35.4 11.0 2.1e-05 23.6 0.1 2.1 2 0 0 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|119719951|ref|YP_920446.1| - 5.9e-07 28.7 3.5 5.9e-07 28.7 3.5 2.3 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|119719951|ref|YP_920446.1| - 1.1e-06 27.3 13.2 0.00054 18.5 3.2 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector Nuc_H_symport PF03825.16 gi|119719951|ref|YP_920446.1| - 0.00062 18.9 0.6 0.00062 18.9 0.6 1.9 2 0 0 2 2 2 1 Nucleoside H+ symporter DUF3021 PF11457.8 gi|119719951|ref|YP_920446.1| - 0.36 11.2 8.7 1.7 9.0 1.2 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3021) OATP PF03137.20 gi|119719951|ref|YP_920446.1| - 2.4 6.4 6.8 0.26 9.5 0.1 2.5 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family NAD_synthase PF02540.17 gi|119719952|ref|YP_920447.1| - 1.2e-67 227.6 0.0 1.5e-67 227.3 0.0 1.1 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|119719952|ref|YP_920447.1| - 0.00057 18.8 0.0 0.05 12.4 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase PhosphMutase PF10143.9 gi|119719954|ref|YP_920449.1| - 3.4e-50 170.2 0.0 4.8e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|119719954|ref|YP_920449.1| - 2.9e-31 108.7 0.0 3.5e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|119719954|ref|YP_920449.1| - 0.0017 18.0 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|119719954|ref|YP_920449.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 PglZ domain V4R PF02830.18 gi|119719955|ref|YP_920450.1| - 2.3e-05 24.3 0.1 4.3e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 V4R domain ACT PF01842.25 gi|119719955|ref|YP_920450.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 ACT domain UPF0669 PF17065.5 gi|119719955|ref|YP_920450.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Putative cytokine, C6ORF120 ACT_5 PF13710.6 gi|119719955|ref|YP_920450.1| - 0.054 13.3 0.7 0.068 13.0 0.1 1.6 2 0 0 2 2 2 0 ACT domain HTH_9 PF08221.11 gi|119719956|ref|YP_920451.1| - 1.7e-05 24.8 0.6 3.1e-05 24.0 0.6 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|119719956|ref|YP_920451.1| - 0.00087 19.1 0.2 0.0014 18.5 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119719956|ref|YP_920451.1| - 0.0098 15.8 0.1 0.098 12.6 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|119719956|ref|YP_920451.1| - 0.013 15.3 0.2 0.038 13.9 0.2 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|119719956|ref|YP_920451.1| - 0.015 15.0 0.0 0.19 11.4 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 gi|119719956|ref|YP_920451.1| - 0.016 15.1 0.0 0.027 14.3 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|119719956|ref|YP_920451.1| - 0.046 13.5 0.9 0.073 12.9 0.2 1.8 2 1 0 2 2 2 0 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|119719956|ref|YP_920451.1| - 0.097 12.8 0.9 0.24 11.5 0.9 1.7 1 1 0 1 1 1 0 DprA winged helix domain DUF998 PF06197.13 gi|119719957|ref|YP_920452.1| - 1.7e-27 96.2 26.6 1.9e-27 96.1 26.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Borrelia_P13 PF05628.12 gi|119719957|ref|YP_920452.1| - 0.028 14.4 1.7 0.028 14.4 1.7 1.9 1 1 0 1 1 1 0 Borrelia membrane protein P13 ECF-ribofla_trS PF07155.12 gi|119719958|ref|YP_920453.1| - 0.00071 19.6 12.7 0.00071 19.6 12.7 2.0 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component DUF2157 PF09925.9 gi|119719958|ref|YP_920453.1| - 5.4 6.8 19.9 0.2 11.4 12.5 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) GHMP_kinases_N PF00288.26 gi|119719959|ref|YP_920454.1| - 9.5e-08 32.2 6.5 1.8e-07 31.3 5.5 2.0 1 1 1 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|119719959|ref|YP_920454.1| - 2e-06 28.1 0.1 5.9e-06 26.6 0.1 1.9 1 0 0 1 1 1 1 GHMP kinases C terminal Acylphosphatase PF00708.18 gi|119719960|ref|YP_920455.1| - 9.3e-28 96.5 0.0 1e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase MoeA_N PF03453.17 gi|119719961|ref|YP_920456.1| - 2.7e-33 114.9 0.2 4.2e-33 114.3 0.2 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoeA_C PF03454.15 gi|119719961|ref|YP_920456.1| - 1.9e-18 66.4 0.6 2.4e-16 59.7 0.2 2.6 2 0 0 2 2 2 2 MoeA C-terminal region (domain IV) MoCF_biosynth PF00994.24 gi|119719961|ref|YP_920456.1| - 6.4e-17 61.5 0.0 1e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|119719962|ref|YP_920457.1| - 1.8e-52 177.3 0.3 3.5e-52 176.3 0.3 1.5 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|119719962|ref|YP_920457.1| - 1.6e-37 128.7 0.4 8e-37 126.4 0.7 2.0 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|119719962|ref|YP_920457.1| - 5.5e-21 74.7 0.0 3.7e-20 72.1 0.0 2.3 3 0 0 3 3 3 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|119719962|ref|YP_920457.1| - 1.1e-09 38.4 0.7 5.9e-09 36.0 0.1 2.6 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like_2 PF12849.7 gi|119719962|ref|YP_920457.1| - 0.037 13.7 0.0 12 5.5 0.0 2.6 3 0 0 3 3 3 0 PBP superfamily domain SBP_bac_8 PF13416.6 gi|119719963|ref|YP_920458.1| - 6.9e-39 134.3 5.0 9.8e-39 133.8 5.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119719963|ref|YP_920458.1| - 6.8e-27 95.2 8.8 1e-26 94.6 8.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|119719964|ref|YP_920459.1| - 2.3e-17 63.3 20.2 2.3e-17 63.3 20.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119719965|ref|YP_920460.1| - 8.9e-22 77.7 14.5 8.9e-22 77.7 14.5 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|119719966|ref|YP_920461.1| - 2.8e-60 204.4 0.1 3.4e-60 204.1 0.1 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|119719966|ref|YP_920461.1| - 1.6e-16 61.2 1.3 4e-16 59.9 1.3 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|119719966|ref|YP_920461.1| - 1.3e-09 37.5 0.0 9.9e-09 34.6 0.0 2.1 1 1 0 1 1 1 1 PBP superfamily domain HCV_NS4a PF01006.20 gi|119719966|ref|YP_920461.1| - 0.028 14.2 0.1 0.086 12.6 0.1 1.8 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a BPD_transp_1 PF00528.22 gi|119719967|ref|YP_920462.1| - 2.8e-08 33.7 16.5 2.8e-08 33.7 16.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component YjbT PF17089.5 gi|119719967|ref|YP_920462.1| - 0.46 10.5 1.7 3.3 7.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family BPD_transp_1 PF00528.22 gi|119719968|ref|YP_920463.1| - 6.3e-16 58.6 10.9 6.3e-16 58.6 10.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|119719969|ref|YP_920464.1| - 6.2e-30 104.5 0.0 1.1e-29 103.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119719969|ref|YP_920464.1| - 1.8e-12 47.7 0.0 9.4e-08 32.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119719969|ref|YP_920464.1| - 4.5e-09 36.1 0.0 4.8e-08 32.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119719969|ref|YP_920464.1| - 3e-05 24.3 0.0 9.7e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119719969|ref|YP_920464.1| - 3.5e-05 24.3 0.2 0.00012 22.5 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|119719969|ref|YP_920464.1| - 0.00069 19.4 0.0 0.16 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|119719969|ref|YP_920464.1| - 0.00073 19.2 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|119719969|ref|YP_920464.1| - 0.0032 17.4 0.0 0.0096 15.8 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase PRK PF00485.18 gi|119719969|ref|YP_920464.1| - 0.0035 17.1 0.0 0.012 15.4 0.0 1.9 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.6 gi|119719969|ref|YP_920464.1| - 0.005 17.4 0.0 0.009 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|119719969|ref|YP_920464.1| - 0.0058 17.1 0.0 0.4 11.1 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|119719969|ref|YP_920464.1| - 0.0085 16.0 0.0 0.029 14.3 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|119719969|ref|YP_920464.1| - 0.01 15.6 0.0 0.083 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|119719969|ref|YP_920464.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|119719969|ref|YP_920464.1| - 0.014 14.6 0.0 0.025 13.8 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|119719969|ref|YP_920464.1| - 0.016 14.5 0.0 0.94 8.7 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.6 gi|119719969|ref|YP_920464.1| - 0.017 15.6 0.0 0.18 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|119719969|ref|YP_920464.1| - 0.027 14.2 0.0 0.056 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|119719969|ref|YP_920464.1| - 0.037 14.3 0.0 0.66 10.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|119719969|ref|YP_920464.1| - 0.038 14.2 0.2 0.23 11.6 0.2 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119719969|ref|YP_920464.1| - 0.055 13.4 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|119719969|ref|YP_920464.1| - 0.065 12.0 0.0 1.2 7.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Adeno_IVa2 PF02456.15 gi|119719969|ref|YP_920464.1| - 0.071 11.9 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein RNA_helicase PF00910.22 gi|119719969|ref|YP_920464.1| - 0.097 13.1 0.0 0.22 11.9 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA_PrkA PF08298.11 gi|119719969|ref|YP_920464.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_5 PF07728.14 gi|119719969|ref|YP_920464.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TrkA_N PF02254.18 gi|119719969|ref|YP_920464.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain AAA_14 PF13173.6 gi|119719969|ref|YP_920464.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|119719969|ref|YP_920464.1| - 0.15 11.3 0.0 0.41 9.8 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|119719969|ref|YP_920464.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Amidohydro_1 PF01979.20 gi|119719970|ref|YP_920465.1| - 0.00029 20.2 0.0 0.0013 18.2 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family TatD_DNase PF01026.21 gi|119719970|ref|YP_920465.1| - 0.012 15.0 0.0 0.028 13.8 0.0 1.6 2 0 0 2 2 2 0 TatD related DNase YXWGXW PF12779.7 gi|119719970|ref|YP_920465.1| - 0.17 12.1 1.6 0.45 10.7 1.6 1.7 1 0 0 1 1 1 0 YXWGXW repeat (2 copies) IMPDH PF00478.25 gi|119719971|ref|YP_920466.1| - 4.1e-116 387.8 1.8 4.9e-116 387.5 1.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|119719971|ref|YP_920466.1| - 1.4e-08 34.5 10.4 5.7e-06 25.9 9.0 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|119719971|ref|YP_920466.1| - 8.7e-07 28.3 15.2 5.2e-05 22.4 15.2 3.0 3 1 0 3 3 3 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|119719971|ref|YP_920466.1| - 6e-06 25.9 0.8 0.015 14.8 0.2 2.2 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|119719971|ref|YP_920466.1| - 0.00025 20.3 2.2 0.00025 20.3 2.2 2.0 1 1 1 2 2 2 1 Conserved region in glutamate synthase Dus PF01207.17 gi|119719971|ref|YP_920466.1| - 0.0035 16.5 0.0 0.0053 15.9 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|119719971|ref|YP_920466.1| - 0.01 15.1 0.9 0.01 15.1 0.9 2.3 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|119719971|ref|YP_920466.1| - 0.054 12.9 0.3 0.25 10.7 0.1 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Cys_Met_Meta_PP PF01053.20 gi|119719971|ref|YP_920466.1| - 0.058 11.9 0.0 0.31 9.5 0.0 1.8 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme TMP-TENI PF02581.17 gi|119719971|ref|YP_920466.1| - 0.18 11.1 2.0 2.9 7.2 0.7 2.2 1 1 1 2 2 2 0 Thiamine monophosphate synthase NanE PF04131.14 gi|119719971|ref|YP_920466.1| - 0.23 10.6 3.3 0.99 8.6 0.1 2.6 1 1 1 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase EAL PF00563.20 gi|119719971|ref|YP_920466.1| - 0.25 10.8 0.4 0.78 9.2 0.1 1.8 2 0 0 2 2 2 0 EAL domain DHO_dh PF01180.21 gi|119719971|ref|YP_920466.1| - 0.68 9.1 6.5 2 7.5 0.7 2.9 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase PhoU PF01895.19 gi|119719972|ref|YP_920467.1| - 4.6e-11 43.0 0.5 1.5e-10 41.4 0.0 2.1 2 0 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|119719972|ref|YP_920467.1| - 2.9e-08 33.5 0.0 8.1e-08 32.0 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF1508 PF07411.12 gi|119719972|ref|YP_920467.1| - 0.0078 16.1 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) RNase_H_2 PF13482.6 gi|119719972|ref|YP_920467.1| - 0.085 12.8 0.0 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 RNase_H superfamily DUF1978 PF09321.10 gi|119719972|ref|YP_920467.1| - 0.088 12.1 0.7 0.15 11.4 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) ParBc PF02195.18 gi|119719973|ref|YP_920468.1| - 7.5e-11 42.2 0.1 1.1e-10 41.6 0.1 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain Acetyltransf_1 PF00583.25 gi|119719975|ref|YP_920470.1| - 6.5e-16 58.6 0.1 7.2e-16 58.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|119719975|ref|YP_920470.1| - 4.3e-12 46.3 0.1 5.2e-12 46.0 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|119719975|ref|YP_920470.1| - 7.7e-09 35.6 0.0 8.6e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|119719975|ref|YP_920470.1| - 2.1e-07 31.0 0.0 2.7e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|119719975|ref|YP_920470.1| - 5.5e-06 26.3 0.0 6.9e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|119719975|ref|YP_920470.1| - 0.00014 21.5 0.0 0.00018 21.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|119719975|ref|YP_920470.1| - 0.0011 19.1 0.0 0.0016 18.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|119719975|ref|YP_920470.1| - 0.0012 18.6 0.0 0.0014 18.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_3 PF13302.7 gi|119719975|ref|YP_920470.1| - 0.0017 19.0 0.0 0.0018 19.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|119719975|ref|YP_920470.1| - 0.028 14.6 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|119719975|ref|YP_920470.1| - 0.029 13.8 0.3 0.056 12.9 0.3 1.6 1 1 0 1 1 1 0 Putative acetyl-transferase PhoU PF01895.19 gi|119719976|ref|YP_920471.1| - 3.9e-21 75.3 3.2 4.2e-14 52.8 0.2 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|119719976|ref|YP_920471.1| - 1.4e-10 40.8 0.2 3.9e-10 39.4 0.2 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Oxidored_q6 PF01058.22 gi|119719977|ref|YP_920472.1| - 1.3e-30 105.9 0.2 1.5e-30 105.7 0.2 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|119719978|ref|YP_920473.1| - 7.7e-73 244.9 0.1 4.3e-49 167.0 0.1 2.9 2 1 1 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|119719978|ref|YP_920473.1| - 8.8e-23 81.2 0.0 3.1e-22 79.5 0.0 1.9 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|119719978|ref|YP_920473.1| - 9.1e-15 54.5 3.2 1.2e-13 50.9 0.1 2.8 3 0 0 3 3 3 2 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|119719979|ref|YP_920474.1| - 1e-14 53.6 9.1 5.3e-07 29.2 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119719979|ref|YP_920474.1| - 1.1e-09 38.2 6.5 1.7e-09 37.6 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119719979|ref|YP_920474.1| - 1.3e-09 38.4 7.5 2.6e-09 37.5 7.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119719979|ref|YP_920474.1| - 3.8e-09 37.3 6.2 0.00013 22.9 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|119719979|ref|YP_920474.1| - 5.4e-09 36.1 4.8 9.3e-09 35.3 4.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719979|ref|YP_920474.1| - 6.7e-08 32.3 11.9 2.2e-05 24.3 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119719979|ref|YP_920474.1| - 9.2e-08 32.1 9.3 0.00018 21.6 1.3 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119719979|ref|YP_920474.1| - 3.3e-07 30.0 11.0 0.00022 21.1 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119719979|ref|YP_920474.1| - 1e-05 26.0 7.5 3.4e-05 24.3 7.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119719979|ref|YP_920474.1| - 6.2e-05 23.4 8.8 0.00023 21.5 9.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119719979|ref|YP_920474.1| - 0.00031 21.5 18.0 0.013 16.4 4.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119719979|ref|YP_920474.1| - 0.00049 20.8 8.2 0.019 15.7 8.2 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|119719979|ref|YP_920474.1| - 0.0019 18.6 11.7 0.068 13.7 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|119719979|ref|YP_920474.1| - 0.0034 18.2 5.0 0.82 10.6 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719979|ref|YP_920474.1| - 0.0047 17.4 9.8 0.46 11.0 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|119719979|ref|YP_920474.1| - 1.1 9.5 9.0 1.1 9.5 1.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|119719980|ref|YP_920475.1| - 2.9e-71 240.2 16.1 3.6e-71 239.9 16.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Internalin_N PF12354.8 gi|119719981|ref|YP_920476.1| - 0.41 10.8 0.1 0.41 10.8 0.1 3.5 2 1 2 4 4 4 0 Bacterial adhesion/invasion protein N terminal VSP PF03302.13 gi|119719981|ref|YP_920476.1| - 0.47 9.2 1.5 0.56 9.0 1.5 1.1 1 0 0 1 1 1 0 Giardia variant-specific surface protein DUF975 PF06161.11 gi|119719981|ref|YP_920476.1| - 0.83 9.4 13.2 0.54 10.0 11.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF975) Oxidored_q3 PF00499.20 gi|119719981|ref|YP_920476.1| - 0.97 9.2 18.8 1.6 8.4 18.8 1.5 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF872 PF05915.12 gi|119719981|ref|YP_920476.1| - 2.3 8.4 13.0 0.29 11.3 6.2 2.4 1 1 2 3 3 3 0 Eukaryotic protein of unknown function (DUF872) DUF3810 PF12725.7 gi|119719981|ref|YP_920476.1| - 4.2 6.6 6.5 5.2 6.3 6.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) Oxidored_q2 PF00420.24 gi|119719982|ref|YP_920477.1| - 5e-05 22.9 3.3 7.7e-05 22.3 3.3 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2678 PF10856.8 gi|119719982|ref|YP_920477.1| - 0.09 12.7 0.4 0.13 12.2 0.3 1.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) GlutR_N PF05201.15 gi|119719982|ref|YP_920477.1| - 0.11 12.2 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, N-terminal domain UL73_N PF12522.8 gi|119719982|ref|YP_920477.1| - 0.17 11.7 1.0 0.17 11.7 1.0 3.0 3 0 0 3 3 3 0 Cytomegalovirus glycoprotein N terminal Proton_antipo_M PF00361.20 gi|119719983|ref|YP_920478.1| - 5.7e-75 252.2 19.7 5.7e-75 252.2 19.7 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119719983|ref|YP_920478.1| - 8.9e-12 44.9 0.2 5.8e-11 42.3 0.2 2.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|119719984|ref|YP_920479.1| - 5e-55 186.8 20.4 5e-55 186.8 20.4 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|119719984|ref|YP_920479.1| - 0.00076 18.9 4.7 0.00076 18.9 4.7 2.1 1 1 1 2 2 2 1 NADH dehydrogenase I, subunit N related protein COX8 PF02285.15 gi|119719984|ref|YP_920479.1| - 4.4 7.3 7.3 8.7 6.3 0.1 4.2 4 0 0 4 4 4 0 Cytochrome oxidase c subunit VIII Oxidored_q4 PF00507.19 gi|119719985|ref|YP_920480.1| - 3.5e-08 33.5 0.0 4.6e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.22 gi|119719986|ref|YP_920481.1| - 1.3e-21 76.8 0.0 1.7e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|119719987|ref|YP_920482.1| - 7.3e-34 117.0 0.0 9.1e-34 116.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|119719988|ref|YP_920483.1| - 2.5e-90 302.2 0.0 3.6e-90 301.8 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RhgB_N PF09284.10 gi|119719988|ref|YP_920483.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Rhamnogalacturonan lyase B, N-terminal NADHdh PF00146.21 gi|119719989|ref|YP_920484.1| - 8.5e-83 278.1 19.2 1e-82 277.8 19.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4_7 PF12838.7 gi|119719990|ref|YP_920485.1| - 1.4e-16 60.8 27.1 2.2e-09 37.7 10.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119719990|ref|YP_920485.1| - 2.7e-16 58.6 13.3 5.7e-08 32.2 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119719990|ref|YP_920485.1| - 1.1e-09 39.1 4.7 0.00015 22.6 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119719990|ref|YP_920485.1| - 1.1e-09 38.3 6.4 1.6e-09 37.7 6.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119719990|ref|YP_920485.1| - 1.4e-09 37.6 15.6 8e-06 25.7 3.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119719990|ref|YP_920485.1| - 1.6e-09 37.8 8.9 2.4e-09 37.2 8.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119719990|ref|YP_920485.1| - 2.5e-09 37.1 7.6 3.8e-09 36.5 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119719990|ref|YP_920485.1| - 1.2e-08 34.5 11.7 4.3e-05 23.4 1.0 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119719990|ref|YP_920485.1| - 6.3e-08 32.5 12.2 0.00067 20.0 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119719990|ref|YP_920485.1| - 1.2e-05 25.8 9.1 0.0085 16.6 2.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119719990|ref|YP_920485.1| - 5.8e-05 23.5 9.8 0.068 13.6 0.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119719990|ref|YP_920485.1| - 0.00089 19.7 11.6 0.17 12.5 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|119719990|ref|YP_920485.1| - 0.0012 19.6 3.5 0.35 11.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|119719990|ref|YP_920485.1| - 0.0015 19.3 16.0 0.04 14.9 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|119719990|ref|YP_920485.1| - 0.0084 16.3 9.3 0.12 12.6 9.3 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|119719990|ref|YP_920485.1| - 0.029 14.5 2.4 0.081 13.1 2.6 1.6 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|119719990|ref|YP_920485.1| - 0.22 12.4 12.8 1.2 10.1 3.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.20 gi|119719991|ref|YP_920486.1| - 5.3e-09 35.9 17.4 5.3e-09 35.9 17.4 1.4 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TssN PF17555.2 gi|119719991|ref|YP_920486.1| - 6.1 6.1 12.6 0.73 9.2 8.6 1.6 2 0 0 2 2 2 0 Type VI secretion system, TssN DUF2663 PF10864.8 gi|119719991|ref|YP_920486.1| - 8.5 6.8 6.7 1.3 9.5 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2663) Oxidored_q2 PF00420.24 gi|119719992|ref|YP_920487.1| - 2.6e-13 49.5 8.4 3.2e-13 49.2 8.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|119719993|ref|YP_920488.1| - 4.6e-61 206.6 26.8 4.6e-61 206.6 26.8 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119719993|ref|YP_920488.1| - 0.0058 16.7 0.3 0.0058 16.7 0.3 2.6 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|119719994|ref|YP_920489.1| - 1.6e-55 188.4 27.9 2.4e-52 177.9 26.9 3.7 3 2 1 4 4 4 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119719994|ref|YP_920489.1| - 2.7e-10 40.2 4.5 2.7e-10 40.2 4.5 3.1 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|119719995|ref|YP_920490.1| - 2e-39 135.6 16.2 3.8e-39 134.7 16.2 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Gln-synt_C PF00120.24 gi|119719996|ref|YP_920491.1| - 2e-73 247.4 0.0 3.3e-73 246.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|119719996|ref|YP_920491.1| - 3.9e-05 23.3 0.0 8.5e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain RE_XcyI PF09571.10 gi|119719996|ref|YP_920491.1| - 0.023 13.9 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 XcyI restriction endonuclease Gln-synt_N_2 PF16952.5 gi|119719996|ref|YP_920491.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain SIS_2 PF13580.6 gi|119719997|ref|YP_920492.1| - 2.1e-44 150.9 0.0 2.8e-44 150.5 0.0 1.2 1 0 0 1 1 1 1 SIS domain DUF2529 PF10740.9 gi|119719997|ref|YP_920492.1| - 9.4e-09 35.1 0.0 0.00099 18.8 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF2529) SIS PF01380.22 gi|119719997|ref|YP_920492.1| - 1.9e-05 24.5 0.3 0.00079 19.3 0.0 2.3 2 0 0 2 2 2 1 SIS domain PTS-HPr PF00381.19 gi|119719998|ref|YP_920493.1| - 1.2e-29 102.3 0.3 1.3e-29 102.2 0.3 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site FeoA PF04023.14 gi|119719998|ref|YP_920493.1| - 0.036 14.3 0.1 0.049 13.9 0.1 1.4 1 0 0 1 1 1 0 FeoA domain PEP-utilizers_C PF02896.18 gi|119719999|ref|YP_920494.1| - 4.4e-79 265.6 0.0 6.3e-79 265.1 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 gi|119719999|ref|YP_920494.1| - 2.5e-14 53.5 0.5 2.5e-14 53.5 0.5 2.3 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 gi|119719999|ref|YP_920494.1| - 1.1e-10 41.0 0.1 9.6e-10 38.1 0.1 2.6 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|119719999|ref|YP_920494.1| - 3.6e-05 23.0 0.0 7e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Amidohydro_1 PF01979.20 gi|119720000|ref|YP_920495.1| - 1.5e-25 90.3 0.5 2.1e-25 89.8 0.5 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|119720000|ref|YP_920495.1| - 7.6e-12 45.4 3.4 5.3e-05 22.9 0.0 2.8 2 1 0 2 2 2 2 Amidohydrolase family SIS PF01380.22 gi|119720001|ref|YP_920496.1| - 4.3e-36 123.6 0.0 3.3e-23 82.0 0.0 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|119720001|ref|YP_920496.1| - 2.6e-15 56.8 0.0 6.3e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|119720001|ref|YP_920496.1| - 8.5e-12 45.1 0.0 1.9e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF1707 PF08044.11 gi|119720001|ref|YP_920496.1| - 0.032 14.3 2.9 0.86 9.7 0.4 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) SIS_2 PF13580.6 gi|119720001|ref|YP_920496.1| - 0.056 13.5 3.0 0.072 13.1 0.1 2.6 3 1 1 4 4 4 0 SIS domain Ceramidase_alk PF04734.13 gi|119720002|ref|YP_920497.1| - 4.1e-10 38.9 0.0 5.3e-05 22.1 0.0 3.0 3 0 0 3 3 3 3 Neutral/alkaline non-lysosomal ceramidase, N-terminal Gate PF07670.14 gi|119720002|ref|YP_920497.1| - 0.2 11.9 0.0 0.46 10.8 0.0 1.5 1 0 0 1 1 1 0 Nucleoside recognition GFO_IDH_MocA PF01408.22 gi|119720003|ref|YP_920498.1| - 1.4e-18 67.8 0.0 2.1e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|119720003|ref|YP_920498.1| - 8.1e-09 35.5 0.0 1.4e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|119720003|ref|YP_920498.1| - 0.022 15.4 0.0 0.043 14.4 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ox_reductase_C PF08635.10 gi|119720003|ref|YP_920498.1| - 0.023 14.4 0.0 0.67 9.6 0.0 2.3 1 1 0 1 1 1 0 Putative oxidoreductase C terminal domain PTSIIB_sorb PF03830.15 gi|119720004|ref|YP_920499.1| - 2.4e-39 134.9 0.0 2.9e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 PTS system sorbose subfamily IIB component EIIA-man PF03610.16 gi|119720005|ref|YP_920500.1| - 8.1e-12 45.4 0.3 1e-11 45.1 0.3 1.2 1 0 0 1 1 1 1 PTS system fructose IIA component N_Asn_amidohyd PF14736.6 gi|119720006|ref|YP_920501.1| - 0.064 12.4 0.0 0.24 10.5 0.0 1.8 1 1 1 2 2 2 0 Protein N-terminal asparagine amidohydrolase EIID-AGA PF03613.14 gi|119720007|ref|YP_920502.1| - 2.6e-78 262.8 5.2 2.6e-78 262.8 5.2 2.1 2 0 0 2 2 2 1 PTS system mannose/fructose/sorbose family IID component EII-Sor PF03609.14 gi|119720007|ref|YP_920502.1| - 2.5e-58 197.2 24.6 2.5e-58 197.2 24.6 2.3 2 1 0 2 2 2 1 PTS system sorbose-specific iic component Hydrolase_3 PF08282.12 gi|119720008|ref|YP_920503.1| - 1.6e-29 103.4 0.0 2.9e-18 66.6 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|119720008|ref|YP_920503.1| - 3.5e-11 43.1 0.0 6.3e-10 39.0 0.0 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|119720008|ref|YP_920503.1| - 9.1e-05 21.7 0.0 0.29 10.2 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase HAD PF12710.7 gi|119720008|ref|YP_920503.1| - 0.00092 19.7 0.1 0.052 13.9 0.1 2.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|119720008|ref|YP_920503.1| - 0.048 13.2 0.0 0.086 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) Pribosyltran PF00156.27 gi|119720009|ref|YP_920504.1| - 2.9e-15 56.1 0.1 8e-15 54.7 0.0 1.7 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119720009|ref|YP_920504.1| - 0.0067 15.9 0.2 0.025 14.0 0.0 1.9 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase DUF1400 PF07176.11 gi|119720009|ref|YP_920504.1| - 0.029 14.7 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) Resolvase PF00239.21 gi|119720009|ref|YP_920504.1| - 0.091 12.9 0.2 0.19 11.8 0.2 1.5 1 0 0 1 1 1 0 Resolvase, N terminal domain PRTase_2 PF15609.6 gi|119720009|ref|YP_920504.1| - 0.093 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF2754 PF10953.8 gi|119720010|ref|YP_920505.1| - 3.6 7.9 11.3 0.61 10.4 6.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2754) CbiQ PF02361.16 gi|119720011|ref|YP_920506.1| - 1.6e-21 77.0 14.9 2.2e-21 76.5 14.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|119720012|ref|YP_920507.1| - 1e-57 194.5 0.0 9.5e-30 103.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|119720012|ref|YP_920507.1| - 5.5e-14 52.7 1.6 0.0043 16.9 0.0 4.1 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720012|ref|YP_920507.1| - 3.6e-09 36.4 0.3 0.012 15.0 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119720012|ref|YP_920507.1| - 1.9e-07 31.8 0.2 0.0011 19.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|119720012|ref|YP_920507.1| - 4e-07 29.8 2.8 0.013 15.0 0.4 3.5 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|119720012|ref|YP_920507.1| - 4.7e-07 30.3 2.6 0.012 16.0 0.2 2.7 2 2 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|119720012|ref|YP_920507.1| - 1.4e-06 27.9 1.1 0.035 13.8 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119720012|ref|YP_920507.1| - 1e-05 25.8 4.1 0.14 12.4 0.4 4.1 3 2 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|119720012|ref|YP_920507.1| - 1.9e-05 24.1 0.0 0.025 14.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|119720012|ref|YP_920507.1| - 2.5e-05 24.1 1.0 0.087 12.5 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|119720012|ref|YP_920507.1| - 5.7e-05 23.5 1.3 0.011 16.2 0.1 3.3 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|119720012|ref|YP_920507.1| - 9.6e-05 22.4 0.4 0.082 12.8 0.1 2.7 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|119720012|ref|YP_920507.1| - 0.00011 22.4 0.4 0.18 11.9 0.2 2.6 2 1 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|119720012|ref|YP_920507.1| - 0.00019 20.9 0.1 0.2 10.9 0.0 2.4 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 gi|119720012|ref|YP_920507.1| - 0.00019 21.4 0.7 0.68 9.8 0.1 3.2 3 0 0 3 3 3 2 NTPase NB-ARC PF00931.22 gi|119720012|ref|YP_920507.1| - 0.00021 20.6 0.5 0.41 9.8 0.0 2.5 3 0 0 3 3 2 2 NB-ARC domain AAA_18 PF13238.6 gi|119720012|ref|YP_920507.1| - 0.00021 21.9 3.7 0.25 11.9 0.1 3.4 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|119720012|ref|YP_920507.1| - 0.0003 20.7 1.2 0.72 9.7 0.1 2.7 2 0 0 2 2 2 2 RsgA GTPase TsaE PF02367.17 gi|119720012|ref|YP_920507.1| - 0.00087 19.3 1.2 0.24 11.4 0.1 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|119720012|ref|YP_920507.1| - 0.0015 17.9 1.9 0.42 9.9 0.1 2.9 3 0 0 3 3 3 1 KaiC AAA_24 PF13479.6 gi|119720012|ref|YP_920507.1| - 0.0015 18.3 0.6 0.42 10.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|119720012|ref|YP_920507.1| - 0.003 17.8 0.1 0.87 9.9 0.1 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit RuvB_N PF05496.12 gi|119720012|ref|YP_920507.1| - 0.0047 16.7 0.4 0.023 14.4 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_15 PF13175.6 gi|119720012|ref|YP_920507.1| - 0.005 16.6 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.19 gi|119720012|ref|YP_920507.1| - 0.0053 16.4 2.4 0.48 10.0 0.2 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|119720012|ref|YP_920507.1| - 0.0061 16.2 0.4 0.51 9.9 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|119720012|ref|YP_920507.1| - 0.01 15.9 0.9 0.37 10.8 0.1 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|119720012|ref|YP_920507.1| - 0.01 14.9 1.7 2.2 7.3 0.1 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.14 gi|119720012|ref|YP_920507.1| - 0.015 15.2 1.0 2 8.3 0.1 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 gi|119720012|ref|YP_920507.1| - 0.015 15.0 4.1 2.7 7.7 0.1 3.7 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|119720012|ref|YP_920507.1| - 0.02 14.9 1.2 6 6.9 0.1 2.8 3 0 0 3 3 2 0 AAA domain ATPase_2 PF01637.18 gi|119720012|ref|YP_920507.1| - 0.025 14.5 0.2 4 7.3 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea APS_kinase PF01583.20 gi|119720012|ref|YP_920507.1| - 0.034 14.0 0.5 4.6 7.1 0.1 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase TniB PF05621.11 gi|119720012|ref|YP_920507.1| - 0.04 13.3 0.1 3.3 7.1 0.0 3.3 4 0 0 4 4 4 0 Bacterial TniB protein AAA_13 PF13166.6 gi|119720012|ref|YP_920507.1| - 0.052 12.2 0.2 0.18 10.4 0.0 1.9 3 0 0 3 3 3 0 AAA domain ATP_bind_1 PF03029.17 gi|119720012|ref|YP_920507.1| - 0.056 13.2 0.4 15 5.3 0.0 2.7 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein PhoH PF02562.16 gi|119720012|ref|YP_920507.1| - 0.056 12.9 1.0 0.77 9.2 0.1 2.6 3 0 0 3 3 3 0 PhoH-like protein RecA PF00154.21 gi|119720012|ref|YP_920507.1| - 0.057 12.9 1.1 5.1 6.5 0.1 2.7 3 0 0 3 3 3 0 recA bacterial DNA recombination protein PRK PF00485.18 gi|119720012|ref|YP_920507.1| - 0.062 13.0 0.4 3.2 7.4 0.1 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family PduV-EutP PF10662.9 gi|119720012|ref|YP_920507.1| - 0.073 12.8 0.9 0.87 9.3 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|119720012|ref|YP_920507.1| - 0.087 13.1 3.3 1.4 9.1 0.1 2.5 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|119720012|ref|YP_920507.1| - 0.093 12.8 1.5 9.3 6.4 0.0 2.8 3 0 0 3 3 2 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.25 gi|119720012|ref|YP_920507.1| - 0.098 12.3 0.7 2.7 7.6 0.0 2.8 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.22 gi|119720012|ref|YP_920507.1| - 0.11 12.9 0.3 2.8 8.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase DUF463 PF04317.12 gi|119720012|ref|YP_920507.1| - 0.12 11.2 0.2 0.19 10.6 0.2 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 Gtr1_RagA PF04670.12 gi|119720012|ref|YP_920507.1| - 0.18 11.1 0.3 0.35 10.2 0.0 1.6 2 0 0 2 2 1 0 Gtr1/RagA G protein conserved region PIF1 PF05970.14 gi|119720012|ref|YP_920507.1| - 0.2 10.8 0.2 17 4.5 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Rad17 PF03215.15 gi|119720012|ref|YP_920507.1| - 0.21 11.5 0.1 18 5.2 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_19 PF13245.6 gi|119720012|ref|YP_920507.1| - 0.48 10.7 4.3 16 5.8 0.3 3.2 4 0 0 4 4 3 0 AAA domain DUF87 PF01935.17 gi|119720012|ref|YP_920507.1| - 1.1 9.3 3.1 21 5.1 0.2 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain BCA_ABC_TP_C PF12399.8 gi|119720012|ref|YP_920507.1| - 2.1 8.4 5.8 0.66 10.0 0.3 2.9 3 0 0 3 3 3 0 Branched-chain amino acid ATP-binding cassette transporter GATase PF00117.28 gi|119720013|ref|YP_920508.1| - 4.7e-06 26.5 0.0 5e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|119720013|ref|YP_920508.1| - 0.0033 17.3 0.1 1.1 9.1 0.0 2.1 1 1 0 2 2 2 2 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|119720013|ref|YP_920508.1| - 0.091 12.3 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|119720013|ref|YP_920508.1| - 0.11 12.3 0.3 0.35 10.6 0.1 1.9 2 1 0 3 3 3 0 Peptidase C26 Diphthami_syn_2 PF01902.17 gi|119720014|ref|YP_920509.1| - 1.4e-74 250.3 0.1 1.6e-74 250.1 0.1 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|119720014|ref|YP_920509.1| - 0.17 11.3 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Pribosyltran PF00156.27 gi|119720015|ref|YP_920510.1| - 0.011 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119720015|ref|YP_920510.1| - 0.017 14.6 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase SAM_Exu PF18609.1 gi|119720015|ref|YP_920510.1| - 0.21 11.7 0.4 0.46 10.6 0.4 1.5 1 0 0 1 1 1 0 Exuperantia SAM-like domain MFS_1 PF07690.16 gi|119720016|ref|YP_920511.1| - 1.3e-48 165.7 29.5 4e-40 137.8 19.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|119720016|ref|YP_920511.1| - 4.5e-05 22.5 22.8 0.0042 16.0 9.2 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|119720016|ref|YP_920511.1| - 0.00014 20.8 10.1 0.0062 15.4 5.6 2.8 1 1 1 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|119720016|ref|YP_920511.1| - 0.00021 19.8 10.2 0.0029 16.0 1.6 2.7 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family Glyco_hydro_1 PF00232.18 gi|119720017|ref|YP_920512.1| - 2e-61 207.8 0.0 9.1e-47 159.5 0.0 2.5 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|119720017|ref|YP_920512.1| - 5.1e-06 26.1 0.0 3.5e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) HTH_24 PF13412.6 gi|119720018|ref|YP_920513.1| - 9.3e-05 21.9 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|119720018|ref|YP_920513.1| - 0.0087 16.0 0.2 0.022 14.7 0.0 1.7 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|119720018|ref|YP_920513.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.6 gi|119720018|ref|YP_920513.1| - 0.068 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF4366 PF14283.6 gi|119720018|ref|YP_920513.1| - 0.078 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) GalP_UDP_transf PF01087.22 gi|119720019|ref|YP_920514.1| - 2.7e-19 70.3 0.0 8e-19 68.8 0.0 1.7 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|119720019|ref|YP_920514.1| - 8.6e-16 58.1 0.0 1.3e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.23 gi|119720019|ref|YP_920514.1| - 0.0055 17.4 0.0 0.014 16.1 0.0 1.7 1 0 0 1 1 1 1 HIT domain DUF4931 PF16285.5 gi|119720019|ref|YP_920514.1| - 0.0082 15.5 0.0 0.11 11.8 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4931) DcpS_C PF11969.8 gi|119720019|ref|YP_920514.1| - 0.014 15.9 0.0 0.023 15.2 0.0 1.3 1 0 0 1 1 1 0 Scavenger mRNA decapping enzyme C-term binding DUF4921 PF16268.5 gi|119720019|ref|YP_920514.1| - 0.11 11.3 0.1 0.18 10.6 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4921) Phage_holin_4_2 PF04020.13 gi|119720020|ref|YP_920515.1| - 4e-05 24.2 13.9 0.00044 20.9 13.3 2.0 1 1 0 1 1 1 1 Mycobacterial 4 TMS phage holin, superfamily IV TctB PF07331.11 gi|119720020|ref|YP_920515.1| - 0.72 10.1 17.8 0.1 12.9 3.5 1.9 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Phage_holin_2_4 PF16082.5 gi|119720020|ref|YP_920515.1| - 3.9 7.3 0.0 3.9 7.3 0.0 2.5 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like GHMP_kinases_N PF00288.26 gi|119720021|ref|YP_920516.1| - 5.4e-17 61.8 0.1 5.4e-17 61.8 0.1 2.4 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|119720021|ref|YP_920516.1| - 9.9e-10 38.7 0.3 3e-09 37.1 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|119720021|ref|YP_920516.1| - 1.3e-09 37.5 0.0 2.3e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature DUF4574 PF15141.6 gi|119720021|ref|YP_920516.1| - 0.38 10.7 1.1 14 5.7 0.3 2.4 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 DUF498 PF04430.14 gi|119720022|ref|YP_920517.1| - 1.3e-22 79.9 0.0 1.6e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) TPR_12 PF13424.6 gi|119720023|ref|YP_920518.1| - 0.00021 21.5 3.3 0.00076 19.7 1.2 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|119720023|ref|YP_920518.1| - 0.012 15.6 3.1 0.13 12.4 0.9 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|119720023|ref|YP_920518.1| - 0.018 15.7 3.5 0.13 13.0 1.8 3.2 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|119720023|ref|YP_920518.1| - 0.04 13.8 3.0 0.095 12.6 1.6 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|119720023|ref|YP_920518.1| - 0.048 13.8 3.3 0.08 13.1 0.9 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_5 PF07728.14 gi|119720023|ref|YP_920518.1| - 0.11 12.5 0.1 14 5.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ANAPC3 PF12895.7 gi|119720023|ref|YP_920518.1| - 0.21 11.8 0.8 0.69 10.2 0.0 2.3 3 0 0 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.6 gi|119720023|ref|YP_920518.1| - 0.43 10.9 2.5 1.3 9.5 0.3 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|119720023|ref|YP_920518.1| - 2.7 9.0 5.3 8.6 7.5 1.3 4.0 3 0 0 3 3 3 0 Tetratricopeptide repeat Metallophos_2 PF12850.7 gi|119720024|ref|YP_920519.1| - 2.2e-15 57.3 0.0 7.1e-08 32.8 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|119720024|ref|YP_920519.1| - 4.9e-10 40.2 0.2 3e-07 31.1 0.1 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase TcpE PF12648.7 gi|119720024|ref|YP_920519.1| - 0.66 10.5 2.6 2.4 8.7 2.0 2.0 2 0 0 2 2 2 0 TcpE family Cation_efflux PF01545.21 gi|119720025|ref|YP_920520.1| - 7.4e-32 110.7 10.7 9e-32 110.4 10.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|119720025|ref|YP_920520.1| - 1e-18 67.2 4.1 1.9e-18 66.4 4.1 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter AMP-binding_C_2 PF14535.6 gi|119720025|ref|YP_920520.1| - 0.021 15.1 1.1 0.039 14.3 1.1 1.4 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain TetR_C_35 PF18556.1 gi|119720025|ref|YP_920520.1| - 0.14 12.3 0.4 0.14 12.3 0.4 2.3 3 0 0 3 3 3 0 Bacterial Tetracyclin repressor, C-terminal domain Apolipoprotein PF01442.18 gi|119720026|ref|YP_920521.1| - 0.0018 18.2 2.4 0.0052 16.7 2.4 1.7 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Tropomyosin_1 PF12718.7 gi|119720026|ref|YP_920521.1| - 0.0029 17.7 6.3 0.0029 17.7 6.3 2.4 2 1 0 2 2 2 1 Tropomyosin like DUF1664 PF07889.12 gi|119720026|ref|YP_920521.1| - 0.0046 17.0 5.2 0.042 13.9 1.9 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF1664) ABC_tran_CTD PF16326.5 gi|119720026|ref|YP_920521.1| - 0.006 16.8 4.2 0.006 16.8 4.2 3.5 3 0 0 3 3 3 1 ABC transporter C-terminal domain PhaP_Bmeg PF09602.10 gi|119720026|ref|YP_920521.1| - 0.011 15.6 4.1 0.011 15.6 4.1 1.7 2 0 0 2 2 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) CdvA PF18822.1 gi|119720026|ref|YP_920521.1| - 0.034 14.0 9.5 0.56 10.0 0.6 2.9 1 1 1 2 2 2 0 CdvA-like coiled-coil domain PRiA4_ORF3 PF07929.11 gi|119720026|ref|YP_920521.1| - 0.036 13.8 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Plasmid pRiA4b ORF-3-like protein MIF4G_like_2 PF09090.11 gi|119720026|ref|YP_920521.1| - 0.047 13.2 1.8 0.091 12.2 1.8 1.4 1 0 0 1 1 1 0 MIF4G like TPR_10 PF13374.6 gi|119720026|ref|YP_920521.1| - 0.11 12.4 0.3 1.3 9.0 0.1 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF2408 PF10303.9 gi|119720026|ref|YP_920521.1| - 0.15 12.6 3.8 0.53 10.8 3.8 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) CK2S PF15011.6 gi|119720026|ref|YP_920521.1| - 0.19 11.6 2.6 0.8 9.6 0.1 2.2 2 0 0 2 2 2 0 Casein Kinase 2 substrate TMF_TATA_bd PF12325.8 gi|119720026|ref|YP_920521.1| - 0.49 10.6 11.8 0.49 10.6 4.6 2.8 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DHR10 PF18595.1 gi|119720026|ref|YP_920521.1| - 0.59 10.2 14.5 7.2 6.7 8.8 2.7 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain MnmE_helical PF12631.7 gi|119720026|ref|YP_920521.1| - 0.6 10.2 8.8 0.1 12.7 1.2 2.3 2 1 0 2 2 2 0 MnmE helical domain ApoLp-III PF07464.11 gi|119720026|ref|YP_920521.1| - 0.62 10.1 10.5 3.5 7.7 2.4 2.8 2 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) Fmp27_WPPW PF10359.9 gi|119720026|ref|YP_920521.1| - 0.82 8.5 5.4 0.44 9.4 2.3 1.8 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.12 gi|119720026|ref|YP_920521.1| - 1.1 9.3 14.3 0.047 13.7 3.6 2.9 3 1 1 4 4 4 0 Laminin Domain II Cob_adeno_trans PF01923.18 gi|119720026|ref|YP_920521.1| - 1.2 9.2 5.2 0.99 9.5 1.1 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Seryl_tRNA_N PF02403.22 gi|119720026|ref|YP_920521.1| - 1.7 8.9 13.7 0.66 10.2 8.9 2.6 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ATG16 PF08614.11 gi|119720026|ref|YP_920521.1| - 1.9 8.7 12.5 0.55 10.4 4.5 2.4 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) SlyX PF04102.12 gi|119720026|ref|YP_920521.1| - 4 8.1 8.2 3.8 8.2 2.0 2.8 2 0 0 2 2 2 0 SlyX KxDL PF10241.9 gi|119720026|ref|YP_920521.1| - 4.7 7.6 5.9 19 5.6 4.1 2.9 2 1 0 2 2 2 0 Uncharacterized conserved protein PspA_IM30 PF04012.12 gi|119720026|ref|YP_920521.1| - 5.4 6.5 18.5 3.8 7.0 6.4 2.5 2 1 0 2 2 2 0 PspA/IM30 family Spc7 PF08317.11 gi|119720026|ref|YP_920521.1| - 8.7 5.1 16.7 1.2 8.0 10.2 2.2 1 1 0 2 2 2 0 Spc7 kinetochore protein Molybdopterin PF00384.22 gi|119720027|ref|YP_920522.1| - 2.7e-53 181.5 0.0 4.9e-53 180.6 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|119720027|ref|YP_920522.1| - 8.4e-17 61.2 0.1 3e-16 59.4 0.0 2.0 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|119720027|ref|YP_920522.1| - 9.1e-07 28.8 0.1 1.6e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|119720027|ref|YP_920522.1| - 0.08 13.1 0.0 0.25 11.6 0.0 1.8 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.6 gi|119720028|ref|YP_920523.1| - 3.6e-21 75.2 8.1 3.6e-21 75.2 8.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119720028|ref|YP_920523.1| - 1.6e-17 62.8 31.3 9e-08 31.9 1.5 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119720028|ref|YP_920523.1| - 1.2e-15 57.9 27.9 7.1e-10 39.3 8.2 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119720028|ref|YP_920523.1| - 6.1e-15 54.3 37.6 2.5e-08 33.4 2.4 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119720028|ref|YP_920523.1| - 8.3e-13 47.6 32.4 6.7e-06 25.9 1.6 4.7 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119720028|ref|YP_920523.1| - 3.3e-11 43.1 30.8 1.7e-05 24.9 9.2 4.2 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119720028|ref|YP_920523.1| - 5.9e-10 39.2 25.8 1e-05 25.6 8.6 3.4 1 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119720028|ref|YP_920523.1| - 5.4e-08 33.2 23.1 6.5e-06 26.5 5.6 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119720028|ref|YP_920523.1| - 7.7e-08 32.3 34.6 0.0016 18.8 2.9 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119720028|ref|YP_920523.1| - 5.9e-06 26.9 45.8 0.035 15.1 7.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119720028|ref|YP_920523.1| - 9.3e-05 22.5 33.6 0.013 15.6 12.4 3.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119720028|ref|YP_920523.1| - 0.00011 23.0 27.0 0.26 12.3 0.9 4.2 3 1 2 5 5 5 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|119720028|ref|YP_920523.1| - 0.00035 21.0 26.6 0.071 13.7 4.6 3.9 1 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119720028|ref|YP_920523.1| - 0.00042 21.0 14.9 0.032 15.0 0.7 3.8 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|119720028|ref|YP_920523.1| - 0.002 18.3 4.9 0.002 18.3 4.9 3.4 1 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119720028|ref|YP_920523.1| - 0.16 12.8 1.4 0.16 12.8 1.4 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|119720028|ref|YP_920523.1| - 0.42 10.7 0.1 0.42 10.7 0.1 4.0 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster NrfD PF03916.14 gi|119720029|ref|YP_920524.1| - 2.8e-21 76.5 31.5 3.3e-21 76.2 31.5 1.1 1 0 0 1 1 1 1 Polysulphide reductase, NrfD NrfD_2 PF14589.6 gi|119720029|ref|YP_920524.1| - 3.5e-15 56.7 30.0 5e-15 56.2 30.0 1.1 1 0 0 1 1 1 1 Polysulfide reductase Sdh_cyt PF01127.22 gi|119720030|ref|YP_920525.1| - 4.6e-11 42.8 5.4 5.8e-11 42.5 5.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_D PF02313.17 gi|119720030|ref|YP_920525.1| - 0.00081 19.5 5.9 0.0011 19.1 5.9 1.1 1 0 0 1 1 1 1 Fumarate reductase subunit D Fumarate_red_C PF02300.17 gi|119720030|ref|YP_920525.1| - 0.043 13.9 4.3 0.062 13.4 4.3 1.3 1 0 0 1 1 1 0 Fumarate reductase subunit C Sdh_cyt PF01127.22 gi|119720031|ref|YP_920526.1| - 7e-09 35.8 7.4 8.5e-09 35.5 7.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fumarate_red_C PF02300.17 gi|119720031|ref|YP_920526.1| - 0.0027 17.8 3.9 0.0043 17.1 3.9 1.4 1 1 0 1 1 1 1 Fumarate reductase subunit C DUF4231 PF14015.6 gi|119720031|ref|YP_920526.1| - 1.3 9.5 3.6 0.89 10.0 1.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) VMA21 PF09446.10 gi|119720031|ref|YP_920526.1| - 7.9 6.7 10.7 2.8 8.1 1.2 2.7 2 1 1 3 3 3 0 VMA21-like domain Fer2_3 PF13085.6 gi|119720032|ref|YP_920527.1| - 9.3e-30 102.8 0.0 1.3e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|119720032|ref|YP_920527.1| - 5.5e-10 39.5 0.5 5.5e-10 39.5 0.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119720032|ref|YP_920527.1| - 3.1e-06 27.2 1.9 3.1e-06 27.2 1.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|119720032|ref|YP_920527.1| - 9.5e-06 25.5 0.5 9.5e-06 25.5 0.5 2.1 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_17 PF13534.6 gi|119720032|ref|YP_920527.1| - 2.3e-05 24.8 10.8 0.00079 19.9 3.9 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119720032|ref|YP_920527.1| - 0.00036 20.8 0.4 0.00036 20.8 0.4 2.8 3 1 0 3 3 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119720032|ref|YP_920527.1| - 0.00043 20.8 2.9 0.00043 20.8 2.9 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119720032|ref|YP_920527.1| - 0.00045 20.3 7.1 0.0067 16.6 5.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119720032|ref|YP_920527.1| - 0.0036 17.3 1.7 0.0036 17.3 1.7 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4 PF00037.27 gi|119720032|ref|YP_920527.1| - 0.018 14.8 5.0 0.018 14.8 5.0 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119720032|ref|YP_920527.1| - 0.046 13.9 1.2 0.046 13.9 1.2 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|119720032|ref|YP_920527.1| - 0.079 12.7 3.0 4 7.3 0.9 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|119720032|ref|YP_920527.1| - 0.085 13.8 7.3 0.14 13.1 4.7 2.4 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain DAO PF01266.24 gi|119720033|ref|YP_920528.1| - 4.3e-55 187.7 0.5 5.2e-55 187.4 0.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|119720033|ref|YP_920528.1| - 4.7e-11 42.5 0.0 7.2e-11 41.9 0.0 1.3 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|119720033|ref|YP_920528.1| - 9.7e-08 31.5 2.7 0.0013 17.9 2.1 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|119720033|ref|YP_920528.1| - 2.6e-07 30.2 0.5 2e-06 27.3 0.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|119720033|ref|YP_920528.1| - 1.8e-05 24.3 2.3 0.00029 20.3 2.3 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|119720033|ref|YP_920528.1| - 2.1e-05 24.6 3.8 5.2e-05 23.4 2.5 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|119720033|ref|YP_920528.1| - 0.00012 22.6 2.4 0.00083 19.9 1.1 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|119720033|ref|YP_920528.1| - 0.0016 17.4 1.6 0.9 8.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|119720033|ref|YP_920528.1| - 0.007 15.1 0.5 0.033 12.9 0.5 1.9 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|119720033|ref|YP_920528.1| - 0.013 14.7 0.6 0.024 13.9 0.6 1.4 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|119720033|ref|YP_920528.1| - 0.016 14.3 1.2 0.027 13.6 1.0 1.4 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|119720033|ref|YP_920528.1| - 0.016 15.6 0.0 0.036 14.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|119720033|ref|YP_920528.1| - 0.023 14.0 0.1 0.043 13.1 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|119720033|ref|YP_920528.1| - 0.028 14.3 0.6 0.054 13.4 0.6 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|119720033|ref|YP_920528.1| - 0.074 12.1 1.0 0.19 10.8 0.5 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|119720033|ref|YP_920528.1| - 0.13 11.4 0.0 3.5 6.7 0.1 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_4 PF01565.23 gi|119720033|ref|YP_920528.1| - 0.15 11.8 0.6 0.29 10.9 0.6 1.5 1 0 0 1 1 1 0 FAD binding domain ApbA PF02558.16 gi|119720033|ref|YP_920528.1| - 1.1 8.8 3.5 0.38 10.4 0.5 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA FGGY_N PF00370.21 gi|119720034|ref|YP_920529.1| - 2.4e-72 243.4 0.0 3.2e-72 243.0 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|119720034|ref|YP_920529.1| - 5.4e-59 199.3 0.1 1.6e-56 191.2 0.1 2.2 2 0 0 2 2 2 2 FGGY family of carbohydrate kinases, C-terminal domain Thioredoxin PF00085.20 gi|119720035|ref|YP_920530.1| - 6.9e-25 87.0 0.0 9.1e-25 86.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|119720035|ref|YP_920530.1| - 1.7e-06 28.3 0.0 0.0042 17.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|119720035|ref|YP_920530.1| - 8.6e-06 26.2 0.1 9e-05 22.9 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|119720035|ref|YP_920530.1| - 0.0001 21.8 0.0 0.00013 21.5 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_9 PF14595.6 gi|119720035|ref|YP_920530.1| - 0.00024 20.8 0.0 0.00033 20.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|119720035|ref|YP_920530.1| - 0.0012 18.9 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Redoxin PF08534.10 gi|119720035|ref|YP_920530.1| - 0.0022 17.7 0.0 0.0027 17.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_7 PF13899.6 gi|119720035|ref|YP_920530.1| - 0.016 15.4 0.0 0.023 14.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like AhpC-TSA PF00578.21 gi|119720035|ref|YP_920530.1| - 0.018 14.9 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family KaiB PF07689.12 gi|119720035|ref|YP_920530.1| - 0.034 13.9 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 KaiB domain DUF953 PF06110.11 gi|119720035|ref|YP_920530.1| - 0.044 13.4 0.1 0.23 11.1 0.0 2.1 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF953) TraF PF13728.6 gi|119720035|ref|YP_920530.1| - 0.073 12.9 0.0 0.088 12.6 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein AAA_14 PF13173.6 gi|119720036|ref|YP_920531.1| - 1.8e-06 28.0 0.0 3.3e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119720036|ref|YP_920531.1| - 0.00088 19.6 0.1 2.7 8.3 0.0 2.8 1 1 1 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|119720036|ref|YP_920531.1| - 0.015 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain HEPN PF05168.14 gi|119720037|ref|YP_920532.1| - 1.4e-32 112.2 1.3 1.6e-32 112.1 1.3 1.0 1 0 0 1 1 1 1 HEPN domain RC-P840_PscD PF10657.9 gi|119720037|ref|YP_920532.1| - 0.03 14.4 0.0 0.034 14.3 0.0 1.1 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD DUF1771 PF08590.10 gi|119720037|ref|YP_920532.1| - 0.047 14.1 2.2 2 8.9 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) DUF1548 PF07579.11 gi|119720037|ref|YP_920532.1| - 0.16 12.3 0.0 0.36 11.2 0.0 1.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1548) NTP_transf_2 PF01909.23 gi|119720038|ref|YP_920533.1| - 1.2e-10 41.5 0.0 1.9e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720038|ref|YP_920533.1| - 7.9e-07 29.1 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|119720038|ref|YP_920533.1| - 0.043 13.6 0.3 0.28 11.0 0.3 2.0 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MdcG PF10620.9 gi|119720038|ref|YP_920533.1| - 0.071 12.9 0.0 0.083 12.7 0.0 1.1 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DNA_pol3_delta PF06144.13 gi|119720038|ref|YP_920533.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase III, delta subunit HAD_2 PF13419.6 gi|119720039|ref|YP_920534.1| - 8.2e-09 35.8 0.0 1.2e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119720039|ref|YP_920534.1| - 3e-06 27.7 0.1 3.9e-05 24.0 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119720039|ref|YP_920534.1| - 0.014 15.5 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Acid_phosphat_B PF03767.14 gi|119720039|ref|YP_920534.1| - 0.049 13.2 0.0 0.37 10.3 0.0 2.0 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 gi|119720039|ref|YP_920534.1| - 0.063 13.4 0.0 15 5.8 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Lys_export PF03956.13 gi|119720040|ref|YP_920535.1| - 6.1e-40 136.8 14.6 6.1e-40 136.8 14.6 1.8 2 0 0 2 2 2 1 Lysine exporter LysO Chlorophyllase2 PF12740.7 gi|119720040|ref|YP_920535.1| - 0.15 10.9 0.1 1.9 7.3 0.4 2.1 2 0 0 2 2 2 0 Chlorophyllase enzyme MFS_1 PF07690.16 gi|119720041|ref|YP_920536.1| - 5.8e-12 45.2 47.6 7e-10 38.3 37.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|119720041|ref|YP_920536.1| - 5.1e-05 22.3 9.2 0.00072 18.5 0.9 2.2 1 1 0 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|119720041|ref|YP_920536.1| - 2.4 6.9 12.5 0.87 8.4 8.2 2.2 2 1 0 2 2 2 0 Sugar (and other) transporter ABC_tran PF00005.27 gi|119720042|ref|YP_920537.1| - 8.3e-29 100.8 0.0 1.5e-28 100.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720042|ref|YP_920537.1| - 8.1e-15 55.4 0.3 4.7e-09 36.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|119720042|ref|YP_920537.1| - 2.5e-08 34.5 0.0 5.7e-08 33.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|119720042|ref|YP_920537.1| - 9.5e-05 22.1 0.3 0.00019 21.1 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|119720042|ref|YP_920537.1| - 0.00097 18.9 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|119720042|ref|YP_920537.1| - 0.0013 18.2 0.0 0.52 9.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|119720042|ref|YP_920537.1| - 0.0022 17.9 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|119720042|ref|YP_920537.1| - 0.004 17.5 0.1 0.01 16.3 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|119720042|ref|YP_920537.1| - 0.0065 16.2 0.0 1.3 8.7 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein MeaB PF03308.16 gi|119720042|ref|YP_920537.1| - 0.0077 15.2 0.3 0.027 13.5 0.1 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 gi|119720042|ref|YP_920537.1| - 0.0086 16.6 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119720042|ref|YP_920537.1| - 0.01 16.1 0.0 0.11 12.8 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119720042|ref|YP_920537.1| - 0.012 16.1 0.0 0.064 13.7 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|119720042|ref|YP_920537.1| - 0.029 14.0 0.5 0.69 9.5 0.1 2.7 3 0 0 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|119720042|ref|YP_920537.1| - 0.034 14.1 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase DUF87 PF01935.17 gi|119720042|ref|YP_920537.1| - 0.046 13.8 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_5 PF07728.14 gi|119720042|ref|YP_920537.1| - 0.073 13.1 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|119720042|ref|YP_920537.1| - 0.089 12.5 0.2 0.42 10.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|119720042|ref|YP_920537.1| - 0.091 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal Mg_chelatase PF01078.21 gi|119720042|ref|YP_920537.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|119720042|ref|YP_920537.1| - 0.12 12.9 0.0 0.28 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119720042|ref|YP_920537.1| - 0.14 12.0 0.2 0.97 9.3 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_PrkA PF08298.11 gi|119720042|ref|YP_920537.1| - 0.15 10.9 0.1 0.31 9.9 0.0 1.5 2 0 0 2 2 2 0 PrkA AAA domain AAA_13 PF13166.6 gi|119720042|ref|YP_920537.1| - 0.16 10.6 0.0 1.1 7.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|119720042|ref|YP_920537.1| - 0.18 12.2 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC2_membrane PF01061.24 gi|119720043|ref|YP_920538.1| - 1.5e-09 37.6 6.0 1.5e-09 37.6 6.0 1.6 2 0 0 2 2 2 1 ABC-2 type transporter Glu_synthase PF01645.17 gi|119720045|ref|YP_920540.1| - 2.3e-24 86.2 2.6 6.1e-24 84.8 1.9 2.0 1 1 1 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|119720045|ref|YP_920540.1| - 2.6e-19 69.5 3.5 3.1e-13 49.5 1.9 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|119720045|ref|YP_920540.1| - 0.00039 19.9 2.0 0.0006 19.3 2.0 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase tRNA-synt_2 PF00152.20 gi|119720046|ref|YP_920541.1| - 2.3e-50 171.5 0.0 2.7e-50 171.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) BAR_3_WASP_bdg PF10456.9 gi|119720046|ref|YP_920541.1| - 0.084 12.3 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 WASP-binding domain of Sorting nexin protein Flavin_Reduct PF01613.18 gi|119720047|ref|YP_920542.1| - 8.8e-27 94.0 0.0 1.1e-26 93.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain CENP-Q PF13094.6 gi|119720048|ref|YP_920543.1| - 0.14 12.3 3.8 0.17 12.1 3.8 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit ATPase PF06745.13 gi|119720050|ref|YP_920545.1| - 2.4e-52 177.6 0.0 2.8e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|119720050|ref|YP_920545.1| - 1.6e-08 34.4 1.8 4.9e-08 32.8 0.2 2.0 1 1 1 2 2 2 1 AAA domain MEDS PF14417.6 gi|119720050|ref|YP_920545.1| - 2.3e-05 24.3 0.1 5.3e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain RecA PF00154.21 gi|119720050|ref|YP_920545.1| - 8.4e-05 22.2 0.1 0.00013 21.5 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|119720050|ref|YP_920545.1| - 9.9e-05 21.7 0.1 0.00016 21.0 0.1 1.5 1 1 0 1 1 1 1 Rad51 AAA_24 PF13479.6 gi|119720050|ref|YP_920545.1| - 0.0043 16.8 0.0 0.0086 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|119720050|ref|YP_920545.1| - 0.0083 15.9 0.1 0.02 14.7 0.1 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|119720050|ref|YP_920545.1| - 0.012 15.0 0.2 0.044 13.1 0.1 2.1 2 1 0 2 2 2 0 DnaB-like helicase C terminal domain AAA PF00004.29 gi|119720050|ref|YP_920545.1| - 0.03 14.7 0.0 0.058 13.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119720050|ref|YP_920545.1| - 0.059 13.6 0.0 0.13 12.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|119720050|ref|YP_920545.1| - 0.083 12.1 0.1 0.083 12.1 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain GvpD PF07088.11 gi|119720050|ref|YP_920545.1| - 0.11 11.0 0.0 0.49 9.0 0.0 2.0 1 1 1 2 2 2 0 GvpD gas vesicle protein SRP54 PF00448.22 gi|119720050|ref|YP_920545.1| - 0.12 11.9 0.5 1.7 8.2 0.5 2.1 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain DUF643 PF04867.12 gi|119720050|ref|YP_920545.1| - 0.16 12.6 0.0 0.41 11.3 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF643) Hydrolase PF00702.26 gi|119720052|ref|YP_920547.1| - 4.8e-08 33.5 0.0 2.6e-07 31.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|119720052|ref|YP_920547.1| - 5.3e-08 33.2 0.0 8.5e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119720052|ref|YP_920547.1| - 7.1e-05 22.8 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|119720052|ref|YP_920547.1| - 0.018 15.5 0.2 0.034 14.5 0.2 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase OMPdecase PF00215.24 gi|119720053|ref|YP_920548.1| - 1.5e-17 64.0 0.0 1.9e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.27 gi|119720054|ref|YP_920549.1| - 8.9e-24 83.8 0.3 1.2e-23 83.4 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119720054|ref|YP_920549.1| - 8.1e-05 22.1 0.0 9.4e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|119720054|ref|YP_920549.1| - 0.00066 19.2 0.4 0.0063 16.0 0.1 2.0 1 1 1 2 2 2 1 Phosphoribosyl transferase Glyco_trans_4_4 PF13579.6 gi|119720054|ref|YP_920549.1| - 0.058 13.8 0.4 3.6 8.0 0.1 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain ABC_tran PF00005.27 gi|119720055|ref|YP_920550.1| - 7.4e-34 117.2 0.0 1.1e-33 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720055|ref|YP_920550.1| - 7.5e-10 39.1 0.5 0.00022 21.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|119720055|ref|YP_920550.1| - 3.3e-09 37.4 0.4 1.4e-08 35.4 0.1 2.2 2 0 0 2 2 2 1 MalK OB fold domain CysA_C_terminal PF17850.1 gi|119720055|ref|YP_920550.1| - 2e-07 31.5 0.1 6.9e-07 29.7 0.1 2.0 1 0 0 1 1 1 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|119720055|ref|YP_920550.1| - 0.00028 20.4 0.1 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720055|ref|YP_920550.1| - 0.00065 20.1 0.0 0.0017 18.8 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119720055|ref|YP_920550.1| - 0.00068 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|119720055|ref|YP_920550.1| - 0.0049 16.8 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase TOBE_2 PF08402.10 gi|119720055|ref|YP_920550.1| - 0.01 16.0 0.5 0.048 13.8 0.5 2.2 1 0 0 1 1 1 0 TOBE domain AAA_23 PF13476.6 gi|119720055|ref|YP_920550.1| - 0.014 15.9 0.0 0.024 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119720055|ref|YP_920550.1| - 0.018 14.8 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119720055|ref|YP_920550.1| - 0.028 14.7 0.0 0.094 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|119720055|ref|YP_920550.1| - 0.069 13.4 0.0 0.38 11.0 0.0 2.2 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|119720055|ref|YP_920550.1| - 0.092 12.7 0.0 0.32 10.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|119720055|ref|YP_920550.1| - 0.12 12.4 0.0 0.4 10.7 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|119720055|ref|YP_920550.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119720055|ref|YP_920550.1| - 0.15 12.6 0.0 0.3 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119720055|ref|YP_920550.1| - 0.16 11.5 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|119720055|ref|YP_920550.1| - 0.17 11.8 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea BPD_transp_1 PF00528.22 gi|119720056|ref|YP_920551.1| - 1.4e-11 44.5 13.7 1.4e-11 44.5 13.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119720057|ref|YP_920552.1| - 1.9e-17 63.6 14.8 1.9e-17 63.6 14.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|119720058|ref|YP_920553.1| - 7.7e-36 124.6 15.7 9.3e-36 124.4 15.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|119720058|ref|YP_920553.1| - 1.3e-33 117.1 5.8 1.6e-33 116.8 5.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119720058|ref|YP_920553.1| - 1e-05 25.4 0.0 5.7e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein VbhA PF18495.1 gi|119720058|ref|YP_920553.1| - 0.064 13.1 0.1 0.17 11.7 0.1 1.8 1 0 0 1 1 1 0 Antitoxin VbhA Glyco_hydro_130 PF04041.13 gi|119720059|ref|YP_920554.1| - 1.2e-56 192.0 0.2 2.5e-27 95.7 0.0 2.0 2 0 0 2 2 2 2 beta-1,4-mannooligosaccharide phosphorylase Regulator_TrmB PF11495.8 gi|119720060|ref|YP_920555.1| - 4e-54 183.3 0.0 5.3e-54 182.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|119720060|ref|YP_920555.1| - 1.4e-23 82.5 0.3 3.2e-23 81.4 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119720060|ref|YP_920555.1| - 0.00013 21.8 0.9 0.00065 19.5 0.0 2.5 3 1 0 3 3 3 1 MarR family MarR PF01047.22 gi|119720060|ref|YP_920555.1| - 0.00018 21.4 0.0 0.00068 19.5 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|119720060|ref|YP_920555.1| - 0.00027 20.7 0.5 0.00087 19.0 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|119720060|ref|YP_920555.1| - 0.00032 20.2 0.1 0.00091 18.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|119720060|ref|YP_920555.1| - 0.0034 17.4 2.4 0.013 15.5 0.0 3.0 4 0 0 4 4 4 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|119720060|ref|YP_920555.1| - 0.0048 17.2 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|119720060|ref|YP_920555.1| - 0.023 14.5 0.0 0.086 12.7 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|119720060|ref|YP_920555.1| - 0.025 14.6 0.0 2.2 8.3 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn helix Glyco_hydro_65m PF03632.15 gi|119720061|ref|YP_920556.1| - 3.3e-101 338.9 0.0 4e-101 338.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 65 central catalytic domain Glyco_hydro_65N PF03636.15 gi|119720061|ref|YP_920556.1| - 5.4e-21 75.3 0.0 8.7e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain HAD PF12710.7 gi|119720062|ref|YP_920557.1| - 6.9e-05 23.3 0.0 8.8e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119720062|ref|YP_920557.1| - 0.029 14.7 0.0 0.045 14.0 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase OTCace_N PF02729.21 gi|119720063|ref|YP_920558.1| - 3.7e-42 143.9 0.0 4.9e-42 143.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|119720063|ref|YP_920558.1| - 1.2e-21 77.4 0.0 1.8e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|119720064|ref|YP_920559.1| - 6.2e-34 116.1 0.2 8e-34 115.8 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|119720064|ref|YP_920559.1| - 3.1e-18 65.4 0.2 5.7e-18 64.5 0.2 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Amidohydro_1 PF01979.20 gi|119720065|ref|YP_920560.1| - 1.6e-26 93.4 0.0 2.1e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|119720065|ref|YP_920560.1| - 2.8e-10 40.3 0.6 0.00011 21.9 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase family DHODB_Fe-S_bind PF10418.9 gi|119720066|ref|YP_920561.1| - 9e-12 44.6 2.2 1.5e-11 43.9 2.2 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|119720066|ref|YP_920561.1| - 0.011 16.4 0.0 0.028 15.1 0.0 1.7 1 1 0 1 1 1 0 Oxidoreductase NAD-binding domain DHO_dh PF01180.21 gi|119720067|ref|YP_920562.1| - 3.1e-50 171.1 0.0 3.6e-50 170.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|119720067|ref|YP_920562.1| - 4.4e-06 26.0 0.0 5e-05 22.6 0.0 2.1 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) IMPDH PF00478.25 gi|119720067|ref|YP_920562.1| - 0.013 14.5 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|119720067|ref|YP_920562.1| - 0.024 13.8 0.1 1.9 7.6 0.2 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.12 gi|119720067|ref|YP_920562.1| - 0.05 12.8 1.1 0.54 9.4 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF561) His_biosynth PF00977.21 gi|119720067|ref|YP_920562.1| - 0.12 11.8 0.1 2.4 7.5 0.1 2.2 2 0 0 2 2 2 0 Histidine biosynthesis protein NMO PF03060.15 gi|119720067|ref|YP_920562.1| - 0.75 9.1 5.1 0.86 8.9 2.6 1.9 2 0 0 2 2 2 0 Nitronate monooxygenase HD PF01966.22 gi|119720068|ref|YP_920563.1| - 3.2e-17 62.9 1.5 3.2e-17 62.9 1.5 1.8 2 0 0 2 2 2 1 HD domain DUF4202 PF13875.6 gi|119720068|ref|YP_920563.1| - 0.0032 17.4 0.0 0.0065 16.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4202) CTP_synth_N PF06418.14 gi|119720069|ref|YP_920564.1| - 8.8e-112 372.7 0.0 1.1e-111 372.4 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|119720069|ref|YP_920564.1| - 6.9e-44 149.9 0.0 1.1e-43 149.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|119720069|ref|YP_920564.1| - 6.9e-11 42.3 0.0 2.9e-10 40.3 0.0 2.0 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|119720069|ref|YP_920564.1| - 4.7e-05 23.4 0.0 0.0001 22.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TAL_FSA PF00923.19 gi|119720070|ref|YP_920565.1| - 2.7e-11 43.3 0.0 4.6e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase ParD_antitoxin PF03693.14 gi|119720070|ref|YP_920565.1| - 0.19 12.2 0.5 0.95 9.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ABC_tran PF00005.27 gi|119720071|ref|YP_920566.1| - 5e-32 111.3 0.0 7.5e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|119720071|ref|YP_920566.1| - 6.6e-12 46.1 0.0 1.9e-11 44.6 0.0 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|119720071|ref|YP_920566.1| - 1.2e-06 28.5 0.0 0.02 14.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|119720071|ref|YP_920566.1| - 2.5e-05 24.3 0.0 8.5e-05 22.7 0.0 2.0 1 0 0 1 1 1 1 TOBE domain Rad17 PF03215.15 gi|119720071|ref|YP_920566.1| - 0.00016 21.7 0.0 0.00022 21.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|119720071|ref|YP_920566.1| - 0.0027 17.2 0.1 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119720071|ref|YP_920566.1| - 0.0027 18.0 0.3 0.006 16.9 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720071|ref|YP_920566.1| - 0.0033 17.8 0.1 0.0052 17.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119720071|ref|YP_920566.1| - 0.022 15.2 0.1 0.062 13.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CysA_C_terminal PF17850.1 gi|119720071|ref|YP_920566.1| - 0.031 14.8 0.2 0.14 12.7 0.1 2.2 2 0 0 2 2 1 0 CysA C-terminal regulatory domain AAA_28 PF13521.6 gi|119720071|ref|YP_920566.1| - 0.038 14.2 0.0 0.18 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|119720071|ref|YP_920566.1| - 0.048 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase TOBE PF03459.17 gi|119720071|ref|YP_920566.1| - 0.059 13.7 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 TOBE domain AAA_30 PF13604.6 gi|119720071|ref|YP_920566.1| - 0.093 12.4 0.0 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|119720071|ref|YP_920566.1| - 0.093 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|119720071|ref|YP_920566.1| - 0.099 13.0 0.1 0.42 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|119720071|ref|YP_920566.1| - 0.16 12.0 0.1 0.42 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 gi|119720071|ref|YP_920566.1| - 0.17 11.1 0.0 0.24 10.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_29 PF13555.6 gi|119720071|ref|YP_920566.1| - 0.2 11.5 0.0 0.65 9.8 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain GDPD PF03009.17 gi|119720073|ref|YP_920568.1| - 2.7e-40 138.8 0.0 8.1e-40 137.2 0.0 1.7 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|119720073|ref|YP_920568.1| - 0.00024 21.5 0.5 0.00046 20.6 0.5 1.4 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family ThiG PF05690.14 gi|119720073|ref|YP_920568.1| - 0.023 14.0 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|119720073|ref|YP_920568.1| - 0.03 13.3 0.0 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase ADH_zinc_N PF00107.26 gi|119720073|ref|YP_920568.1| - 0.035 14.1 0.0 0.47 10.4 0.0 2.5 2 1 1 3 3 3 0 Zinc-binding dehydrogenase Transglut_core PF01841.19 gi|119720074|ref|YP_920569.1| - 7.2e-22 78.0 0.1 1.3e-21 77.1 0.1 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Epimerase PF01370.21 gi|119720075|ref|YP_920570.1| - 1.9e-57 194.5 0.0 2.8e-57 194.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|119720075|ref|YP_920570.1| - 9.6e-52 176.4 0.0 4.3e-51 174.3 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|119720075|ref|YP_920570.1| - 7.5e-27 94.0 0.0 1.3e-26 93.3 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|119720075|ref|YP_920570.1| - 2.4e-21 76.1 0.0 1.8e-20 73.3 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|119720075|ref|YP_920570.1| - 3.1e-16 59.8 0.0 7.5e-16 58.5 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|119720075|ref|YP_920570.1| - 7.4e-15 54.8 0.0 9.3e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|119720075|ref|YP_920570.1| - 1.5e-11 44.0 0.1 2.2e-06 27.0 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|119720075|ref|YP_920570.1| - 7.9e-11 41.8 0.5 3.5e-09 36.4 0.5 2.7 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|119720075|ref|YP_920570.1| - 2.1e-08 34.0 0.1 6.1e-08 32.5 0.1 1.8 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|119720075|ref|YP_920570.1| - 3.8e-05 23.7 0.2 9.5e-05 22.4 0.1 1.6 2 0 0 2 2 2 1 KR domain adh_short_C2 PF13561.6 gi|119720075|ref|YP_920570.1| - 4.1e-05 23.3 0.0 0.0029 17.2 0.0 2.3 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase TrkA_N PF02254.18 gi|119720075|ref|YP_920570.1| - 0.0093 16.2 0.1 0.02 15.2 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.20 gi|119720075|ref|YP_920570.1| - 0.021 14.9 0.2 0.12 12.4 0.0 2.2 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|119720075|ref|YP_920570.1| - 0.025 15.2 0.1 0.079 13.5 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|119720075|ref|YP_920570.1| - 0.067 13.5 0.1 0.16 12.2 0.1 1.7 2 0 0 2 2 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|119720075|ref|YP_920570.1| - 0.097 12.8 0.0 0.2 11.8 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Ldh_1_N PF00056.23 gi|119720075|ref|YP_920570.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|119720075|ref|YP_920570.1| - 0.2 11.5 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thioredoxin PF00085.20 gi|119720076|ref|YP_920571.1| - 4.2e-06 26.7 0.0 6.4e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|119720076|ref|YP_920571.1| - 0.00039 20.8 0.1 0.00069 20.0 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|119720076|ref|YP_920571.1| - 0.025 14.9 0.1 0.53 10.6 0.1 2.0 1 1 1 2 2 2 0 Thioredoxin-like SET_assoc PF11767.8 gi|119720076|ref|YP_920571.1| - 0.049 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Histone lysine methyltransferase SET associated Thioredoxin_4 PF13462.6 gi|119720076|ref|YP_920571.1| - 0.081 13.1 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin TraF PF13728.6 gi|119720076|ref|YP_920571.1| - 0.21 11.4 0.0 0.24 11.2 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein ABC_tran PF00005.27 gi|119720078|ref|YP_920573.1| - 1.7e-27 96.6 0.0 2.4e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720078|ref|YP_920573.1| - 4.3e-11 43.2 1.0 0.00022 21.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119720078|ref|YP_920573.1| - 0.00081 19.9 0.2 0.002 18.7 0.1 1.5 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|119720078|ref|YP_920573.1| - 0.0012 18.3 0.1 0.0025 17.2 0.0 1.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 gi|119720078|ref|YP_920573.1| - 0.014 15.1 0.1 0.11 12.1 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|119720078|ref|YP_920573.1| - 0.014 15.1 0.1 0.023 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|119720078|ref|YP_920573.1| - 0.019 14.7 0.1 2.3 7.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|119720078|ref|YP_920573.1| - 0.021 14.6 0.0 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720078|ref|YP_920573.1| - 0.027 13.9 0.2 4.1 6.8 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|119720078|ref|YP_920573.1| - 0.064 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|119720078|ref|YP_920573.1| - 0.12 12.0 0.0 0.41 10.3 0.0 1.6 1 1 0 2 2 2 0 AAA ATPase domain ABC2_membrane_3 PF12698.7 gi|119720079|ref|YP_920574.1| - 3e-25 89.1 10.4 3.9e-25 88.7 10.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|119720079|ref|YP_920574.1| - 4.3e-16 59.0 18.3 6.7e-16 58.4 18.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|119720079|ref|YP_920574.1| - 6.6e-08 32.2 23.1 5.8e-07 29.1 17.9 3.0 2 1 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|119720079|ref|YP_920574.1| - 1.9e-07 31.2 3.3 1.9e-07 31.2 3.3 3.0 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|119720079|ref|YP_920574.1| - 1.8e-05 24.4 4.3 1.8e-05 24.4 4.3 2.7 2 1 0 3 3 3 1 ABC-2 family transporter protein SBP_bac_1 PF01547.25 gi|119720080|ref|YP_920575.1| - 6.3e-25 88.8 12.0 1.2e-24 87.9 12.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Speriolin_C PF15059.6 gi|119720080|ref|YP_920575.1| - 0.03 14.5 0.0 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 Speriolin C-terminus DUF1043 PF06295.12 gi|119720080|ref|YP_920575.1| - 0.097 12.7 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) SepRS_C PF18006.1 gi|119720080|ref|YP_920575.1| - 0.21 11.7 0.9 2.2 8.4 0.0 2.8 3 0 0 3 3 3 0 O-phosphoseryl-tRNA synthetase C-terminal domain BPD_transp_1 PF00528.22 gi|119720081|ref|YP_920576.1| - 2.5e-15 56.7 19.3 2.5e-15 56.7 19.3 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119720082|ref|YP_920577.1| - 3.6e-11 43.2 20.6 3.6e-11 43.2 20.6 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FLILHELTA PF10306.9 gi|119720082|ref|YP_920577.1| - 0.16 12.4 1.7 0.96 9.9 0.1 2.3 2 0 0 2 2 2 0 Hypothetical protein FLILHELTA ABC_tran PF00005.27 gi|119720083|ref|YP_920578.1| - 2.9e-34 118.5 0.0 4.4e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|119720083|ref|YP_920578.1| - 3.4e-07 30.3 0.4 9e-07 29.0 0.1 1.9 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 gi|119720083|ref|YP_920578.1| - 7.9e-07 29.2 0.0 0.0035 17.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720083|ref|YP_920578.1| - 0.00013 21.5 0.5 0.016 14.7 0.0 2.4 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain OB_MalK PF17912.1 gi|119720083|ref|YP_920578.1| - 0.0021 18.9 0.0 0.0063 17.3 0.0 1.9 1 0 0 1 1 1 1 MalK OB fold domain Rad17 PF03215.15 gi|119720083|ref|YP_920578.1| - 0.0039 17.1 0.0 0.0054 16.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain TOBE PF03459.17 gi|119720083|ref|YP_920578.1| - 0.0055 17.0 0.1 0.028 14.7 0.0 2.3 2 0 0 2 2 1 1 TOBE domain AAA PF00004.29 gi|119720083|ref|YP_920578.1| - 0.016 15.6 0.6 0.085 13.3 0.6 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|119720083|ref|YP_920578.1| - 0.017 14.8 0.0 0.35 10.6 0.1 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119720083|ref|YP_920578.1| - 0.025 14.9 0.2 0.044 14.0 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|119720083|ref|YP_920578.1| - 0.042 14.2 0.0 0.13 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|119720083|ref|YP_920578.1| - 0.049 13.2 0.1 0.47 10.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|119720083|ref|YP_920578.1| - 0.069 13.1 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|119720083|ref|YP_920578.1| - 0.089 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119720083|ref|YP_920578.1| - 0.099 12.4 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119720083|ref|YP_920578.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119720083|ref|YP_920578.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|119720083|ref|YP_920578.1| - 0.15 11.8 0.0 0.22 11.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119720083|ref|YP_920578.1| - 0.22 11.2 0.5 0.77 9.4 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|119720083|ref|YP_920578.1| - 0.24 11.1 0.0 0.44 10.2 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain HD_3 PF13023.6 gi|119720084|ref|YP_920579.1| - 1.4e-15 57.6 0.0 2.4e-15 56.8 0.0 1.4 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|119720084|ref|YP_920579.1| - 1.9e-12 47.4 0.0 6.5e-12 45.6 0.0 1.7 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|119720084|ref|YP_920579.1| - 1.5e-05 25.2 1.3 6.1e-05 23.2 1.1 2.1 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|119720084|ref|YP_920579.1| - 0.051 13.1 0.1 0.18 11.3 0.1 1.8 1 1 1 2 2 2 0 HDOD domain UbiA PF01040.18 gi|119720085|ref|YP_920580.1| - 1.3e-25 90.1 19.9 1.9e-25 89.6 19.9 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Radical_SAM PF04055.21 gi|119720086|ref|YP_920581.1| - 3.6e-22 79.5 0.0 6.7e-22 78.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|119720086|ref|YP_920581.1| - 2.1e-09 37.8 0.2 4.4e-09 36.7 0.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|119720086|ref|YP_920581.1| - 9.6e-07 29.1 0.0 2.1e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119720086|ref|YP_920581.1| - 3.9e-06 27.0 0.0 6.5e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF3104 PF11302.8 gi|119720087|ref|YP_920582.1| - 0.035 13.8 0.1 0.076 12.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3104) Polbeta PF18765.1 gi|119720088|ref|YP_920583.1| - 3.1e-11 43.2 0.0 4.2e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|119720089|ref|YP_920584.1| - 6.8e-07 29.2 0.1 7e-07 29.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 MarC PF01914.17 gi|119720091|ref|YP_920586.1| - 1.8e-42 145.0 10.0 2.2e-42 144.8 10.0 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein AAA_22 PF13401.6 gi|119720092|ref|YP_920587.1| - 0.11 12.7 0.0 0.28 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain PIN PF01850.21 gi|119720093|ref|YP_920588.1| - 5.9e-13 49.4 0.2 1.4e-12 48.2 0.2 1.5 1 1 0 1 1 1 1 PIN domain ClpB_D2-small PF10431.9 gi|119720094|ref|YP_920589.1| - 0.061 13.4 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein CcdA PF07362.12 gi|119720094|ref|YP_920589.1| - 0.1 13.0 0.1 0.42 11.1 0.1 1.9 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA DUF763 PF05559.11 gi|119720097|ref|YP_920592.1| - 1.1e-119 399.3 0.0 1.2e-119 399.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HTH_31 PF13560.6 gi|119720097|ref|YP_920592.1| - 0.13 12.7 3.5 0.54 10.6 3.5 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain ABATE PF07336.11 gi|119720097|ref|YP_920592.1| - 6.6 7.4 6.6 2.6e+02 2.3 6.6 3.0 1 1 0 1 1 1 0 Putative stress-induced transcription regulator EamA PF00892.20 gi|119720098|ref|YP_920593.1| - 5.3e-21 75.2 17.3 5.8e-21 75.1 17.3 1.0 1 0 0 1 1 1 1 EamA-like transporter family SLC35F PF06027.12 gi|119720098|ref|YP_920593.1| - 0.00032 20.3 7.0 0.00037 20.1 7.0 1.0 1 0 0 1 1 1 1 Solute carrier family 35 TMEM234 PF10639.9 gi|119720098|ref|YP_920593.1| - 0.087 12.9 4.1 0.15 12.1 4.1 1.6 1 1 0 1 1 1 0 Putative transmembrane family 234 DUF2070 PF09843.9 gi|119720098|ref|YP_920593.1| - 1.8 6.7 13.0 2.1 6.5 13.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Pox_A14 PF05767.12 gi|119720098|ref|YP_920593.1| - 5.9 7.1 8.2 0.36 11.0 0.7 2.4 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 tRNA-synt_2c PF01411.19 gi|119720099|ref|YP_920594.1| - 3.3e-12 45.7 0.0 4.3e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|119720099|ref|YP_920594.1| - 5.9e-07 29.5 0.2 1.2e-06 28.5 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Methyltransf_25 PF13649.6 gi|119720100|ref|YP_920595.1| - 6.9e-22 78.0 0.0 3.6e-21 75.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119720100|ref|YP_920595.1| - 4.1e-19 69.0 0.1 7.8e-18 64.9 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119720100|ref|YP_920595.1| - 1.3e-15 57.5 0.0 2e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119720100|ref|YP_920595.1| - 7e-14 52.0 0.0 1e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119720100|ref|YP_920595.1| - 1.6e-12 47.3 0.1 4.5e-12 45.8 0.0 1.7 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|119720100|ref|YP_920595.1| - 2.5e-12 47.4 0.0 1.8e-11 44.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|119720100|ref|YP_920595.1| - 5.2e-09 36.0 0.0 9.3e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|119720100|ref|YP_920595.1| - 8.6e-05 22.0 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|119720100|ref|YP_920595.1| - 9.7e-05 22.0 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|119720100|ref|YP_920595.1| - 0.00013 21.4 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|119720100|ref|YP_920595.1| - 0.00017 21.4 0.0 0.00026 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|119720100|ref|YP_920595.1| - 0.0009 18.4 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|119720100|ref|YP_920595.1| - 0.0012 17.8 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.17 gi|119720100|ref|YP_920595.1| - 0.002 17.6 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|119720100|ref|YP_920595.1| - 0.003 16.9 0.0 0.0047 16.2 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain TPMT PF05724.11 gi|119720100|ref|YP_920595.1| - 0.0034 17.1 0.0 0.005 16.5 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.7 gi|119720100|ref|YP_920595.1| - 0.0041 17.0 0.0 0.0075 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|119720100|ref|YP_920595.1| - 0.0069 15.8 0.0 0.0094 15.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) AdoMet_MTase PF07757.13 gi|119720100|ref|YP_920595.1| - 0.0073 16.6 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase FtsJ PF01728.19 gi|119720100|ref|YP_920595.1| - 0.01 16.0 0.0 0.014 15.5 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase N2227 PF07942.12 gi|119720100|ref|YP_920595.1| - 0.021 14.0 0.1 2.3 7.4 0.0 2.6 1 1 1 2 2 2 0 N2227-like protein Methyltransf_32 PF13679.6 gi|119720100|ref|YP_920595.1| - 0.021 14.8 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|119720100|ref|YP_920595.1| - 0.051 13.2 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|119720100|ref|YP_920595.1| - 0.067 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MethyltransfD12 PF02086.15 gi|119720100|ref|YP_920595.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase PIG-L PF02585.17 gi|119720101|ref|YP_920596.1| - 8.2e-30 104.1 0.0 1.2e-29 103.6 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|119720101|ref|YP_920596.1| - 0.0052 16.8 0.1 0.009 16.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 AA_permease_2 PF13520.6 gi|119720102|ref|YP_920597.1| - 1e-51 176.2 29.7 1.2e-51 175.9 29.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|119720102|ref|YP_920597.1| - 5.8e-29 101.0 30.3 1.2e-28 100.0 30.3 1.4 1 1 0 1 1 1 1 Amino acid permease RVP_2 PF08284.11 gi|119720102|ref|YP_920597.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Retroviral aspartyl protease MS_channel PF00924.18 gi|119720103|ref|YP_920598.1| - 2.8e-26 92.3 0.0 4e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel TrkA_N PF02254.18 gi|119720104|ref|YP_920599.1| - 6.6e-29 100.5 1.9 1.1e-28 99.8 0.6 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|119720104|ref|YP_920599.1| - 8.9e-15 54.3 2.6 2.4e-14 52.9 1.5 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|119720104|ref|YP_920599.1| - 1.1e-05 25.8 1.8 1.3e-05 25.6 0.6 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|119720104|ref|YP_920599.1| - 5.6e-05 23.6 0.8 5.6e-05 23.6 0.8 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|119720104|ref|YP_920599.1| - 0.00015 21.7 1.1 0.00025 21.0 0.1 1.9 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|119720104|ref|YP_920599.1| - 0.00026 20.4 0.1 0.00031 20.1 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|119720104|ref|YP_920599.1| - 0.00032 20.4 0.7 0.00078 19.1 0.3 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|119720104|ref|YP_920599.1| - 0.00053 20.5 0.3 0.0027 18.2 0.1 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.6 gi|119720104|ref|YP_920599.1| - 0.00095 19.4 0.2 0.0023 18.1 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NmrA PF05368.13 gi|119720104|ref|YP_920599.1| - 0.00099 18.7 1.2 0.0044 16.6 0.5 2.1 2 1 0 2 2 2 1 NmrA-like family Pyr_redox_2 PF07992.14 gi|119720104|ref|YP_920599.1| - 0.0011 18.2 0.3 0.0018 17.6 0.3 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.6 gi|119720104|ref|YP_920599.1| - 0.0018 18.2 1.9 0.066 13.1 0.6 2.3 2 1 0 2 2 2 1 NAD(P)H-binding NAD_Gly3P_dh_N PF01210.23 gi|119720104|ref|YP_920599.1| - 0.0032 17.4 0.0 0.0055 16.7 0.0 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|119720104|ref|YP_920599.1| - 0.0066 16.1 0.3 0.013 15.1 0.3 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HI0933_like PF03486.14 gi|119720104|ref|YP_920599.1| - 0.0089 14.8 0.1 0.012 14.3 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Shikimate_DH PF01488.20 gi|119720104|ref|YP_920599.1| - 0.01 15.9 0.1 0.02 15.0 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|119720104|ref|YP_920599.1| - 0.01 16.1 0.5 0.022 15.0 0.5 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FAD_binding_2 PF00890.24 gi|119720104|ref|YP_920599.1| - 0.011 14.8 0.2 0.02 14.0 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain LpxI_N PF17930.1 gi|119720104|ref|YP_920599.1| - 0.048 13.5 0.3 0.46 10.4 0.0 2.4 2 1 1 3 3 3 0 LpxI N-terminal domain NAD_binding_2 PF03446.15 gi|119720104|ref|YP_920599.1| - 0.05 13.8 0.2 0.19 11.9 0.0 2.0 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding_2 PF13380.6 gi|119720104|ref|YP_920599.1| - 0.051 14.1 1.1 0.41 11.1 0.2 2.4 1 1 0 2 2 2 0 CoA binding domain ADH_zinc_N PF00107.26 gi|119720104|ref|YP_920599.1| - 0.059 13.4 5.3 0.23 11.4 0.5 2.6 2 1 1 3 3 3 0 Zinc-binding dehydrogenase NUC202 PF08166.12 gi|119720104|ref|YP_920599.1| - 0.067 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 NUC202 domain FAD_binding_3 PF01494.19 gi|119720105|ref|YP_920600.1| - 4.4e-17 62.4 0.7 5e-16 58.9 0.7 2.2 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|119720105|ref|YP_920600.1| - 9.1e-13 48.0 1.1 2.2e-07 30.3 0.5 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|119720105|ref|YP_920600.1| - 1e-10 41.3 0.9 1.7e-10 40.6 0.9 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|119720105|ref|YP_920600.1| - 1.7e-10 40.7 0.1 2.3e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|119720105|ref|YP_920600.1| - 8.3e-09 35.3 5.7 2e-08 34.0 5.7 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|119720105|ref|YP_920600.1| - 1e-08 34.9 0.6 2.9e-05 23.5 0.3 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|119720105|ref|YP_920600.1| - 3.2e-08 32.7 1.1 2.9e-06 26.3 0.6 2.3 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|119720105|ref|YP_920600.1| - 3.8e-08 33.3 8.6 0.00017 21.3 3.2 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|119720105|ref|YP_920600.1| - 1.1e-06 28.8 0.8 2e-05 24.7 0.7 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|119720105|ref|YP_920600.1| - 1.3e-06 27.5 0.4 0.024 13.5 0.2 3.1 3 0 0 3 3 3 2 Tryptophan halogenase GIDA PF01134.22 gi|119720105|ref|YP_920600.1| - 2.5e-06 26.8 4.8 1.5e-05 24.2 4.8 1.9 1 1 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|119720105|ref|YP_920600.1| - 1e-05 26.0 0.5 0.00024 21.6 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|119720105|ref|YP_920600.1| - 0.00062 19.2 4.1 0.01 15.1 0.1 2.9 2 1 1 3 3 3 1 Flavin containing amine oxidoreductase Thi4 PF01946.17 gi|119720105|ref|YP_920600.1| - 0.0023 17.2 0.5 0.0035 16.6 0.5 1.2 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|119720105|ref|YP_920600.1| - 0.021 14.8 1.4 0.2 11.7 1.4 2.2 1 1 0 1 1 1 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|119720105|ref|YP_920600.1| - 0.028 13.7 0.3 0.043 13.1 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Fer2_4 PF13510.6 gi|119720105|ref|YP_920600.1| - 0.096 12.8 0.3 0.38 10.8 0.1 2.0 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain 3HCDH_N PF02737.18 gi|119720105|ref|YP_920600.1| - 0.1 12.4 0.2 0.16 11.8 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE PF08491.10 gi|119720105|ref|YP_920600.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase DUF348 PF03990.14 gi|119720105|ref|YP_920600.1| - 0.19 11.5 1.3 10 5.9 0.4 2.4 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Ntox22 PF15527.6 gi|119720106|ref|YP_920601.1| - 0.0036 17.3 0.0 0.0078 16.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial toxin 22 RsgA_GTPase PF03193.16 gi|119720107|ref|YP_920602.1| - 2.8e-05 24.1 0.0 0.0023 17.8 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase HTH_47 PF16221.5 gi|119720107|ref|YP_920602.1| - 3.8e-05 23.2 0.0 6.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 winged helix-turn-helix AAA_16 PF13191.6 gi|119720107|ref|YP_920602.1| - 0.0096 16.3 0.0 0.015 15.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Sigma70_r4 PF04545.16 gi|119720107|ref|YP_920602.1| - 0.013 15.0 0.0 0.028 13.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF815 PF05673.13 gi|119720107|ref|YP_920602.1| - 0.021 14.0 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|119720107|ref|YP_920602.1| - 0.024 15.1 0.0 0.044 14.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter HTH_IclR PF09339.10 gi|119720107|ref|YP_920602.1| - 0.035 13.9 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain AAA_29 PF13555.6 gi|119720107|ref|YP_920602.1| - 0.036 13.8 0.0 0.07 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrmB PF01978.19 gi|119720107|ref|YP_920602.1| - 0.038 13.9 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA_33 PF13671.6 gi|119720107|ref|YP_920602.1| - 0.039 14.1 0.0 0.059 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119720107|ref|YP_920602.1| - 0.087 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma70_r4_2 PF08281.12 gi|119720107|ref|YP_920602.1| - 0.089 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MMR_HSR1 PF01926.23 gi|119720107|ref|YP_920602.1| - 0.091 12.9 0.0 0.22 11.6 0.0 1.6 1 1 1 2 2 2 0 50S ribosome-binding GTPase HTH_Tnp_ISL3 PF13542.6 gi|119720107|ref|YP_920602.1| - 0.092 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Guanylate_kin PF00625.21 gi|119720107|ref|YP_920602.1| - 0.092 12.4 0.0 0.26 11.0 0.0 1.6 2 0 0 2 2 2 0 Guanylate kinase DUF742 PF05331.11 gi|119720107|ref|YP_920602.1| - 0.096 12.5 0.0 0.26 11.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF742) AAA PF00004.29 gi|119720107|ref|YP_920602.1| - 0.16 12.4 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|119720107|ref|YP_920602.1| - 0.17 12.4 0.0 0.21 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|119720107|ref|YP_920602.1| - 0.17 11.1 0.0 0.31 10.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Sacchrp_dh_NADP PF03435.18 gi|119720108|ref|YP_920603.1| - 2.2e-10 40.9 0.0 3.3e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|119720108|ref|YP_920603.1| - 0.021 15.1 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain PglD_N PF17836.1 gi|119720108|ref|YP_920603.1| - 0.049 14.3 0.0 0.081 13.6 0.0 1.3 1 0 0 1 1 1 0 PglD N-terminal domain ThiF PF00899.21 gi|119720108|ref|YP_920603.1| - 0.06 12.7 0.3 0.095 12.0 0.3 1.3 1 0 0 1 1 1 0 ThiF family DAO PF01266.24 gi|119720108|ref|YP_920603.1| - 0.13 11.8 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|119720108|ref|YP_920603.1| - 0.14 11.7 0.1 0.28 10.8 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|119720108|ref|YP_920603.1| - 0.19 11.3 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CitMHS PF03600.16 gi|119720109|ref|YP_920604.1| - 2e-35 122.4 24.8 2e-35 122.4 24.8 2.2 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|119720109|ref|YP_920604.1| - 9.1e-08 31.8 17.7 9.5e-08 31.8 17.2 1.3 1 1 0 1 1 1 1 Arsenical pump membrane protein DUF2583 PF10762.9 gi|119720109|ref|YP_920604.1| - 8 7.0 9.6 9.2 6.8 1.5 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2583) FUSC PF04632.12 gi|119720110|ref|YP_920605.1| - 0.012 14.2 1.6 0.021 13.4 1.6 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2070 PF09843.9 gi|119720110|ref|YP_920605.1| - 0.048 11.9 6.9 0.052 11.8 6.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4235 PF14019.6 gi|119720110|ref|YP_920605.1| - 0.099 12.7 1.8 0.13 12.4 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4235) PsbR PF04725.12 gi|119720110|ref|YP_920605.1| - 0.13 12.6 0.1 0.27 11.6 0.1 1.5 1 0 0 1 1 1 0 Photosystem II 10 kDa polypeptide PsbR GerA PF03323.13 gi|119720110|ref|YP_920605.1| - 0.15 10.5 1.9 0.15 10.5 1.1 1.4 1 1 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein ABC_tran PF00005.27 gi|119720111|ref|YP_920606.1| - 7.8e-19 68.5 0.0 1.1e-18 68.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720111|ref|YP_920606.1| - 1.4e-10 41.5 1.1 2.9e-05 24.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720111|ref|YP_920606.1| - 1e-05 25.1 0.0 0.021 14.3 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|119720111|ref|YP_920606.1| - 0.00029 21.3 0.0 0.0059 17.0 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|119720111|ref|YP_920606.1| - 0.051 13.3 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|119720111|ref|YP_920606.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|119720111|ref|YP_920606.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119720111|ref|YP_920606.1| - 0.21 11.3 0.1 0.41 10.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|119720111|ref|YP_920606.1| - 0.25 10.5 0.0 0.42 9.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|119720111|ref|YP_920606.1| - 0.32 10.9 1.4 0.81 9.6 0.1 2.2 2 1 1 3 3 3 0 NACHT domain UPF0051 PF01458.17 gi|119720112|ref|YP_920607.1| - 1.9e-65 220.6 0.1 2.5e-65 220.2 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|119720113|ref|YP_920608.1| - 5.4e-29 101.4 0.0 6.8e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Peripla_BP_4 PF13407.6 gi|119720114|ref|YP_920609.1| - 9.2e-44 149.9 0.0 1.1e-43 149.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 gi|119720114|ref|YP_920609.1| - 2.5e-08 33.7 0.0 3.5e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_6 PF13458.6 gi|119720114|ref|YP_920609.1| - 1.9e-05 24.5 0.1 6.4e-05 22.8 0.1 1.7 1 1 0 1 1 1 1 Periplasmic binding protein BPD_transp_2 PF02653.16 gi|119720115|ref|YP_920610.1| - 4.7e-45 153.8 38.6 7.8e-45 153.1 38.6 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|119720116|ref|YP_920611.1| - 8.6e-30 104.0 0.0 1.1e-29 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720116|ref|YP_920611.1| - 3.5e-09 36.9 0.3 0.00086 19.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720116|ref|YP_920611.1| - 8.8e-06 25.3 0.2 0.0002 20.9 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|119720116|ref|YP_920611.1| - 0.00032 20.5 0.1 0.0015 18.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|119720116|ref|YP_920611.1| - 0.00032 19.6 1.0 0.12 11.2 0.2 2.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class MeaB PF03308.16 gi|119720116|ref|YP_920611.1| - 0.00056 19.0 0.1 0.001 18.1 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|119720116|ref|YP_920611.1| - 0.00072 19.3 0.1 0.31 10.8 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_29 PF13555.6 gi|119720116|ref|YP_920611.1| - 0.0017 18.1 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119720116|ref|YP_920611.1| - 0.0061 17.1 0.0 0.01 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720116|ref|YP_920611.1| - 0.058 13.8 0.1 0.07 13.5 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119720116|ref|YP_920611.1| - 0.064 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase TniB PF05621.11 gi|119720116|ref|YP_920611.1| - 0.071 12.5 0.0 13 5.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein NACHT PF05729.12 gi|119720116|ref|YP_920611.1| - 0.073 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|119720116|ref|YP_920611.1| - 0.097 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|119720116|ref|YP_920611.1| - 0.11 12.6 0.1 0.15 12.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|119720116|ref|YP_920611.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|119720116|ref|YP_920611.1| - 0.16 11.1 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_15 PF13175.6 gi|119720116|ref|YP_920611.1| - 0.27 10.9 0.0 0.38 10.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain MtmB PF05369.12 gi|119720117|ref|YP_920612.1| - 1.1e-69 235.4 0.0 1.3e-69 235.2 0.0 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding PF02310.19 gi|119720118|ref|YP_920613.1| - 6e-28 97.3 2.5 6e-28 97.3 2.5 1.6 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|119720118|ref|YP_920613.1| - 8.6e-16 58.2 0.1 2.2e-15 56.8 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain Arch_flagellin PF01917.16 gi|119720120|ref|YP_920615.1| - 6.6e-07 29.7 14.6 1e-06 29.1 14.6 1.3 1 0 0 1 1 1 1 Archaebacterial flagellin Pilin_N PF07790.11 gi|119720120|ref|YP_920615.1| - 0.0019 19.1 4.5 0.0019 19.1 4.5 2.0 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal PapD_C PF02753.17 gi|119720120|ref|YP_920615.1| - 0.013 15.8 1.9 0.023 15.0 1.8 1.5 1 1 0 1 1 1 0 Pili assembly chaperone PapD, C-terminal domain RRM_9 PF18444.1 gi|119720120|ref|YP_920615.1| - 0.031 14.1 0.1 0.074 12.9 0.1 1.7 1 0 0 1 1 1 0 RNA recognition motif MacB_PCD PF12704.7 gi|119720120|ref|YP_920615.1| - 0.54 10.6 9.2 0.99 9.7 9.2 1.5 1 1 0 1 1 1 0 MacB-like periplasmic core domain UDPG_MGDP_dh PF00984.19 gi|119720121|ref|YP_920616.1| - 2.3e-08 34.1 0.0 3.7e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain 2-Hacid_dh_C PF02826.19 gi|119720121|ref|YP_920616.1| - 0.00041 19.7 0.0 0.00065 19.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|119720121|ref|YP_920616.1| - 0.0029 17.2 0.1 3.1 7.4 0.0 3.0 2 1 1 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|119720121|ref|YP_920616.1| - 0.015 15.5 0.0 0.044 14.1 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|119720121|ref|YP_920616.1| - 0.24 11.6 0.0 0.77 9.9 0.0 1.9 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_trans_4_4 PF13579.6 gi|119720121|ref|YP_920616.1| - 0.39 11.1 7.4 1.2 9.6 7.4 1.8 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Saf_2TM PF18303.1 gi|119720122|ref|YP_920617.1| - 0.13 11.9 1.8 0.22 11.1 1.8 1.5 1 1 0 1 1 1 0 SAVED-fused 2TM effector domain FeoB_C PF07664.12 gi|119720122|ref|YP_920617.1| - 2.6 7.8 4.9 2 8.1 0.3 2.3 2 1 0 2 2 2 0 Ferrous iron transport protein B C terminus DUF72 PF01904.18 gi|119720123|ref|YP_920618.1| - 1.5e-33 116.8 0.1 1.7e-33 116.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|119720123|ref|YP_920618.1| - 0.083 12.3 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Peptidase_M48 PF01435.18 gi|119720124|ref|YP_920619.1| - 2.1e-37 128.8 0.6 9.3e-37 126.7 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|119720124|ref|YP_920619.1| - 0.0028 16.9 0.0 0.0045 16.2 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 DSHCT PF08148.12 gi|119720125|ref|YP_920620.1| - 0.041 13.5 0.1 0.047 13.4 0.1 1.0 1 0 0 1 1 1 0 DSHCT (NUC185) domain zf-RanBP PF00641.18 gi|119720127|ref|YP_920622.1| - 4.1e-05 22.8 0.8 5.9e-05 22.3 0.8 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|119720127|ref|YP_920622.1| - 0.00058 19.5 3.8 0.00095 18.8 3.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|119720127|ref|YP_920622.1| - 0.0011 19.0 1.4 0.0019 18.2 1.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|119720127|ref|YP_920622.1| - 0.0058 16.0 5.7 0.011 15.2 5.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain MarR_2 PF12802.7 gi|119720127|ref|YP_920622.1| - 0.012 15.5 0.2 0.037 13.9 0.2 1.9 1 0 0 1 1 1 0 MarR family Thioredoxin_3 PF13192.6 gi|119720127|ref|YP_920622.1| - 0.055 13.5 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin domain ArsD PF06953.11 gi|119720127|ref|YP_920622.1| - 0.076 13.4 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD MNHE PF01899.16 gi|119720127|ref|YP_920622.1| - 0.082 12.7 1.1 0.18 11.6 1.1 1.5 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit MarR PF01047.22 gi|119720127|ref|YP_920622.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF1525 PF07511.11 gi|119720127|ref|YP_920622.1| - 0.2 11.8 0.2 0.44 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1525) DUF35_N PF12172.8 gi|119720127|ref|YP_920622.1| - 0.66 9.9 7.3 1.4 8.9 7.3 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ABC_tran PF00005.27 gi|119720128|ref|YP_920623.1| - 8.7e-28 97.5 0.0 2.9e-27 95.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter DUF4162 PF13732.6 gi|119720128|ref|YP_920623.1| - 2.3e-11 44.2 0.2 7.7e-11 42.6 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|119720128|ref|YP_920623.1| - 6.5e-08 32.7 0.0 0.0069 16.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system KdpD PF02702.17 gi|119720128|ref|YP_920623.1| - 1.8e-05 24.3 0.2 0.00014 21.5 0.1 2.1 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain AAA_23 PF13476.6 gi|119720128|ref|YP_920623.1| - 0.0045 17.5 0.1 0.0088 16.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|119720128|ref|YP_920623.1| - 0.0051 16.0 0.1 0.018 14.3 0.1 1.8 1 1 0 1 1 1 1 NB-ARC domain AAA PF00004.29 gi|119720128|ref|YP_920623.1| - 0.0064 16.9 0.5 0.26 11.7 0.4 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|119720128|ref|YP_920623.1| - 0.0087 15.5 0.0 3.1 7.2 0.1 2.8 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|119720128|ref|YP_920623.1| - 0.014 15.1 0.1 0.056 13.1 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|119720128|ref|YP_920623.1| - 0.024 14.3 0.1 0.051 13.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|119720128|ref|YP_920623.1| - 0.037 13.8 0.1 0.12 12.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain HEM4 PF02602.15 gi|119720128|ref|YP_920623.1| - 0.096 12.0 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD ABC2_membrane_4 PF12730.7 gi|119720129|ref|YP_920624.1| - 0.0068 16.4 14.3 0.0088 16.0 13.0 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|119720129|ref|YP_920624.1| - 0.031 13.4 23.8 0.041 13.0 23.8 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|119720129|ref|YP_920624.1| - 0.36 10.1 16.5 0.088 12.1 13.5 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|119720130|ref|YP_920625.1| - 1e-15 57.7 14.4 1e-15 57.7 14.4 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|119720130|ref|YP_920625.1| - 1.4e-07 31.1 16.3 1.4e-07 31.1 16.3 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|119720130|ref|YP_920625.1| - 4.4e-06 26.0 19.0 5.6e-06 25.7 19.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Peptidase_M1 PF01433.20 gi|119720131|ref|YP_920626.1| - 1.5e-49 168.5 0.1 2.1e-49 168.0 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|119720131|ref|YP_920626.1| - 1.2e-28 99.3 12.7 3.1e-10 40.3 0.8 4.0 3 1 1 4 4 4 3 HEAT repeats Peptidase_M1_N PF17900.1 gi|119720131|ref|YP_920626.1| - 9.3e-18 65.1 0.0 1.5e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|119720131|ref|YP_920626.1| - 1.2e-07 31.7 22.1 0.025 15.2 0.4 6.9 7 0 0 7 7 6 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|119720131|ref|YP_920626.1| - 0.0011 19.1 1.0 5.1 7.6 0.0 5.5 6 0 0 6 6 6 1 HEAT repeat Vitellogenin_N PF01347.22 gi|119720131|ref|YP_920626.1| - 0.0029 16.1 0.0 0.057 11.8 0.0 2.2 1 1 1 2 2 2 1 Lipoprotein amino terminal region DUF4200 PF13863.6 gi|119720131|ref|YP_920626.1| - 0.0086 16.5 5.3 0.018 15.4 5.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) ERAP1_C PF11838.8 gi|119720131|ref|YP_920626.1| - 0.024 14.2 0.2 0.34 10.4 0.1 2.5 1 1 2 3 3 3 0 ERAP1-like C-terminal domain UPF0147 PF03685.13 gi|119720131|ref|YP_920626.1| - 0.028 14.5 0.7 9.8 6.3 0.1 3.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0147) Latarcin PF10279.9 gi|119720131|ref|YP_920626.1| - 0.047 14.1 3.7 0.17 12.3 3.7 2.0 1 0 0 1 1 1 0 Latarcin precursor FTA4 PF13093.6 gi|119720131|ref|YP_920626.1| - 0.049 13.5 0.6 0.12 12.3 0.3 1.8 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF3458 PF11940.8 gi|119720131|ref|YP_920626.1| - 0.071 13.6 0.0 0.19 12.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3458) Ig-like fold Adaptin_N PF01602.20 gi|119720131|ref|YP_920626.1| - 0.25 9.9 0.2 7.5 5.0 0.2 2.1 1 1 2 3 3 3 0 Adaptin N terminal region DivIC PF04977.15 gi|119720131|ref|YP_920626.1| - 0.4 10.5 4.0 0.78 9.6 4.0 1.5 1 0 0 1 1 1 0 Septum formation initiator DUF4140 PF13600.6 gi|119720131|ref|YP_920626.1| - 0.68 10.4 3.7 2.1 8.8 3.7 1.9 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) LMBR1 PF04791.16 gi|119720132|ref|YP_920627.1| - 0.0011 18.0 0.0 0.0012 17.8 0.0 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein Phage_holin_3_6 PF07332.11 gi|119720132|ref|YP_920627.1| - 0.0086 16.1 5.8 0.013 15.6 5.8 1.3 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|119720132|ref|YP_920627.1| - 0.018 14.7 0.2 0.02 14.5 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2614 PF11023.8 gi|119720132|ref|YP_920627.1| - 0.025 14.6 0.1 0.029 14.5 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain RuBisCO_large PF00016.20 gi|119720133|ref|YP_920628.1| - 2e-96 322.7 0.0 2.4e-96 322.5 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|119720133|ref|YP_920628.1| - 1.3e-42 144.8 0.0 2.5e-42 143.9 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain 4HFCP_synth PF04476.13 gi|119720133|ref|YP_920628.1| - 0.0059 16.3 0.0 0.02 14.6 0.0 1.7 2 0 0 2 2 2 1 4-HFC-P synthase Glyco_trans_4_3 PF12000.8 gi|119720133|ref|YP_920628.1| - 0.031 14.0 0.1 0.28 10.9 0.0 2.1 1 1 0 2 2 2 0 Glycosyl transferase family 4 group Radical_SAM PF04055.21 gi|119720134|ref|YP_920629.1| - 4.3e-19 69.5 0.0 3.6e-18 66.5 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|119720134|ref|YP_920629.1| - 0.0013 18.7 0.0 0.053 13.6 0.0 2.3 2 0 0 2 2 2 1 B12 binding domain Flavin_Reduct PF01613.18 gi|119720136|ref|YP_920631.1| - 7.4e-25 87.8 0.0 8.4e-25 87.6 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Fe-ADH_2 PF13685.6 gi|119720137|ref|YP_920632.1| - 7.2e-65 219.2 0.1 9.4e-65 218.8 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|119720137|ref|YP_920632.1| - 1.5e-29 103.0 2.7 6.4e-29 100.9 2.7 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|119720137|ref|YP_920632.1| - 1.4e-09 37.6 0.1 8.2e-06 25.2 0.0 2.7 2 1 0 2 2 2 2 3-dehydroquinate synthase CN_hydrolase PF00795.22 gi|119720138|ref|YP_920633.1| - 1e-36 126.7 0.0 1.1e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Angiomotin_C PF12240.8 gi|119720138|ref|YP_920633.1| - 0.17 11.4 0.1 0.26 10.8 0.1 1.2 1 0 0 1 1 1 0 Angiomotin C terminal HAD_2 PF13419.6 gi|119720139|ref|YP_920634.1| - 9.6e-15 55.1 0.0 1.6e-14 54.4 0.0 1.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119720139|ref|YP_920634.1| - 8e-12 45.9 0.0 2.8e-11 44.1 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119720139|ref|YP_920634.1| - 5.6e-10 39.2 0.0 1.5e-09 37.8 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|119720139|ref|YP_920634.1| - 0.028 14.5 0.0 4.1 7.6 0.0 2.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Methyltransf_11 PF08241.12 gi|119720140|ref|YP_920635.1| - 4.8e-07 30.3 0.0 1.1e-06 29.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119720140|ref|YP_920635.1| - 0.0047 17.6 0.0 0.0097 16.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|119720140|ref|YP_920635.1| - 0.037 13.9 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|119720140|ref|YP_920635.1| - 0.19 11.1 0.0 0.26 10.6 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family SPASM PF13186.6 gi|119720141|ref|YP_920636.1| - 3e-15 56.5 0.1 6.2e-15 55.5 0.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|119720141|ref|YP_920636.1| - 9.4e-10 39.1 0.0 2.4e-09 37.8 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119720141|ref|YP_920636.1| - 0.00055 20.1 0.0 0.0013 18.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119720141|ref|YP_920636.1| - 0.043 14.1 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain NikR_C PF08753.11 gi|119720142|ref|YP_920637.1| - 2.7e-20 72.3 0.1 4.2e-20 71.7 0.1 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|119720142|ref|YP_920637.1| - 2.6e-07 30.3 0.7 4.8e-07 29.5 0.7 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|119720142|ref|YP_920637.1| - 1.9e-05 24.4 0.1 4.2e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_3 PF12651.7 gi|119720142|ref|YP_920637.1| - 6.3e-05 22.9 0.3 0.00012 22.0 0.3 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain tRNA_edit PF04073.15 gi|119720143|ref|YP_920638.1| - 3.9e-30 104.4 0.1 4.8e-30 104.2 0.1 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain DUF4350 PF14258.6 gi|119720143|ref|YP_920638.1| - 0.026 14.9 0.2 0.11 12.9 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4350) Glyco_hydro_16 PF00722.21 gi|119720144|ref|YP_920639.1| - 1.5e-05 24.5 0.1 2.1e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 Laminin_G_3 PF13385.6 gi|119720144|ref|YP_920639.1| - 0.0052 16.9 0.1 0.017 15.3 0.1 1.8 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.24 gi|119720144|ref|YP_920639.1| - 0.096 13.3 0.0 0.17 12.5 0.0 1.5 1 0 0 1 1 1 0 Laminin G domain GntR PF00392.21 gi|119720145|ref|YP_920640.1| - 0.038 13.6 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|119720145|ref|YP_920640.1| - 0.076 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF505 PF04458.12 gi|119720145|ref|YP_920640.1| - 0.18 10.2 0.0 0.26 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) VIT1 PF01988.19 gi|119720145|ref|YP_920640.1| - 2 8.3 16.9 0.12 12.2 5.6 2.3 1 1 2 3 3 3 0 VIT family PNP_UDP_1 PF01048.20 gi|119720146|ref|YP_920641.1| - 5.9e-40 137.0 2.1 8.1e-40 136.5 2.1 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily P22_CoatProtein PF11651.8 gi|119720146|ref|YP_920641.1| - 0.066 11.8 0.2 0.11 11.0 0.2 1.3 1 0 0 1 1 1 0 P22 coat protein - gene protein 5 bact-PGI_C PF10432.9 gi|119720146|ref|YP_920641.1| - 0.07 13.2 0.2 0.32 11.0 0.1 2.1 3 0 0 3 3 3 0 Bacterial phospho-glucose isomerase C-terminal SIS domain LacAB_rpiB PF02502.18 gi|119720147|ref|YP_920642.1| - 7.9e-37 126.4 0.0 8.4e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase SBP_bac_5 PF00496.22 gi|119720151|ref|YP_920646.1| - 4.9e-55 187.0 8.7 2.2e-43 148.7 0.9 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1120 PF06551.12 gi|119720151|ref|YP_920646.1| - 0.025 14.8 0.8 0.046 13.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1120) DUF4065 PF13274.6 gi|119720151|ref|YP_920646.1| - 0.062 14.2 0.0 0.15 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) BPD_transp_1 PF00528.22 gi|119720152|ref|YP_920647.1| - 1e-38 132.9 19.9 1e-38 132.9 19.9 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119720153|ref|YP_920648.1| - 7.4e-28 97.5 10.8 7.4e-28 97.5 10.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|119720153|ref|YP_920648.1| - 0.0001 22.2 0.1 0.0001 22.2 0.1 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF2207 PF09972.9 gi|119720153|ref|YP_920648.1| - 0.52 9.0 1.2 1.8 7.2 1.2 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF5518 PF17647.1 gi|119720153|ref|YP_920648.1| - 1.1 9.4 19.6 0.55 10.4 0.2 3.4 3 0 0 3 3 3 0 Family of unknown function (DUF5518) ABC_tran PF00005.27 gi|119720154|ref|YP_920649.1| - 1.8e-26 93.3 0.0 2.4e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119720154|ref|YP_920649.1| - 2.1e-20 73.0 0.1 3.7e-20 72.2 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|119720154|ref|YP_920649.1| - 2.1e-08 34.3 0.2 0.00013 21.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119720154|ref|YP_920649.1| - 0.0031 17.8 0.9 0.081 13.2 0.9 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119720154|ref|YP_920649.1| - 0.0041 16.6 0.0 1.5 8.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119720154|ref|YP_920649.1| - 0.0067 16.1 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|119720154|ref|YP_920649.1| - 0.017 15.2 0.0 0.036 14.2 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|119720154|ref|YP_920649.1| - 0.019 14.7 0.1 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|119720154|ref|YP_920649.1| - 0.035 14.5 0.2 0.095 13.1 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|119720154|ref|YP_920649.1| - 0.12 12.0 0.1 2.6 7.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|119720154|ref|YP_920649.1| - 0.13 12.3 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|119720154|ref|YP_920649.1| - 0.17 11.4 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|119720154|ref|YP_920649.1| - 0.17 11.2 0.0 1.1 8.6 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|119720154|ref|YP_920649.1| - 0.21 10.4 0.1 0.58 8.9 0.1 1.7 1 1 0 1 1 1 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|119720154|ref|YP_920649.1| - 0.32 10.7 0.0 9.1 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|119720155|ref|YP_920650.1| - 4.2e-33 114.8 0.0 5.7e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119720155|ref|YP_920650.1| - 6.4e-21 74.6 0.5 1.1e-20 73.9 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|119720155|ref|YP_920650.1| - 1.2e-08 35.2 1.4 5.8e-07 29.6 0.3 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720155|ref|YP_920650.1| - 2.5e-05 23.8 0.4 0.00015 21.3 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119720155|ref|YP_920650.1| - 0.00071 19.9 0.1 0.002 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119720155|ref|YP_920650.1| - 0.0085 15.8 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119720155|ref|YP_920650.1| - 0.01 16.3 0.2 0.014 15.7 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119720155|ref|YP_920650.1| - 0.036 14.5 0.0 0.38 11.2 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|119720155|ref|YP_920650.1| - 0.041 14.1 0.0 0.89 9.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|119720155|ref|YP_920650.1| - 0.048 13.5 0.1 0.076 12.9 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|119720155|ref|YP_920650.1| - 0.19 11.1 0.0 0.44 9.9 0.0 1.6 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|119720155|ref|YP_920650.1| - 0.19 11.4 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|119720155|ref|YP_920650.1| - 0.21 11.6 0.1 0.49 10.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|119720155|ref|YP_920650.1| - 0.28 9.8 0.5 0.44 9.1 0.1 1.4 2 0 0 2 2 2 0 AAA domain NTP_transf_3 PF12804.7 gi|119720156|ref|YP_920651.1| - 1.9e-13 51.1 0.1 2.7e-12 47.3 0.0 2.4 1 1 1 2 2 2 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|119720156|ref|YP_920651.1| - 7.5e-12 45.4 0.0 5.7e-10 39.2 0.0 2.2 2 0 0 2 2 2 2 Nucleotidyl transferase CDP-OH_P_transf PF01066.21 gi|119720157|ref|YP_920652.1| - 0.00015 22.5 0.3 0.00015 22.5 0.3 2.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Polbeta PF18765.1 gi|119720158|ref|YP_920653.1| - 1.3e-12 47.6 0.0 1.6e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|119720158|ref|YP_920653.1| - 2.1e-05 24.7 0.1 2.8e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|119720159|ref|YP_920654.1| - 1.5e-12 47.4 0.0 1.8e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 PqqD PF05402.12 gi|119720159|ref|YP_920654.1| - 0.11 12.8 0.3 0.6 10.5 0.1 2.3 2 1 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) DnaB_2 PF07261.11 gi|119720159|ref|YP_920654.1| - 0.17 11.6 0.1 0.61 9.9 0.1 1.9 2 1 0 2 2 2 0 Replication initiation and membrane attachment Radical_SAM PF04055.21 gi|119720160|ref|YP_920655.1| - 7.7e-18 65.4 0.0 2.3e-17 63.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119720160|ref|YP_920655.1| - 6.7e-08 32.9 0.0 1.3e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119720160|ref|YP_920655.1| - 0.0028 17.8 0.0 0.006 16.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain BPD_transp_1 PF00528.22 gi|119720161|ref|YP_920656.1| - 2.5e-14 53.5 18.4 2.5e-14 53.5 18.4 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119720162|ref|YP_920657.1| - 2.4e-13 50.2 20.7 2.4e-13 50.2 20.7 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|119720163|ref|YP_920658.1| - 1.8e-19 70.9 1.2 2.5e-19 70.4 1.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|119720163|ref|YP_920658.1| - 5.1e-13 49.5 0.5 7.5e-13 48.9 0.4 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119720163|ref|YP_920658.1| - 0.089 12.5 0.1 8.6 6.0 0.0 2.5 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein FdhD-NarQ PF02634.15 gi|119720164|ref|YP_920659.1| - 2.4e-45 155.1 0.1 2.5e-37 128.8 0.1 2.0 1 1 1 2 2 2 2 FdhD/NarQ family GCV_T_C PF08669.11 gi|119720164|ref|YP_920659.1| - 0.019 14.8 0.1 5.5 7.0 0.0 2.5 2 0 0 2 2 2 0 Glycine cleavage T-protein C-terminal barrel domain HTH_24 PF13412.6 gi|119720166|ref|YP_920661.1| - 1.6e-07 30.8 0.1 4.1e-07 29.4 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|119720166|ref|YP_920661.1| - 1.7e-07 31.0 0.2 5e-07 29.5 0.2 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|119720166|ref|YP_920661.1| - 7.1e-06 26.0 1.4 1.6e-05 24.9 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|119720166|ref|YP_920661.1| - 2.6e-05 23.9 0.2 2.6e-05 23.9 0.2 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|119720166|ref|YP_920661.1| - 0.00011 21.9 1.0 0.00028 20.6 1.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|119720166|ref|YP_920661.1| - 0.00029 21.3 0.0 0.00055 20.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|119720166|ref|YP_920661.1| - 0.00056 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|119720166|ref|YP_920661.1| - 0.0017 18.5 0.0 0.0046 17.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|119720166|ref|YP_920661.1| - 0.0023 17.8 0.1 0.0053 16.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|119720166|ref|YP_920661.1| - 0.033 14.4 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|119720166|ref|YP_920661.1| - 0.049 13.5 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|119720166|ref|YP_920661.1| - 0.057 13.8 0.1 0.19 12.1 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator Alba PF01918.21 gi|119720167|ref|YP_920662.1| - 7.3e-10 38.5 0.1 1e-09 38.1 0.1 1.2 1 0 0 1 1 1 1 Alba AAA_14 PF13173.6 gi|119720168|ref|YP_920663.1| - 6.9e-26 90.8 0.0 1e-25 90.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|119720168|ref|YP_920663.1| - 1.1e-08 35.2 0.0 3.9e-08 33.5 0.0 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|119720168|ref|YP_920663.1| - 0.0011 19.0 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|119720168|ref|YP_920663.1| - 0.0015 18.8 0.0 0.17 12.1 0.0 2.9 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|119720168|ref|YP_920663.1| - 0.049 14.0 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Cas_APE2256 PF09651.10 gi|119720169|ref|YP_920664.1| - 2.1e-42 144.2 0.0 3.2e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Cas_NE0113 PF09623.10 gi|119720169|ref|YP_920664.1| - 0.011 15.4 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein NE0113 (Cas_NE0113) PEPcase_2 PF14010.6 gi|119720171|ref|YP_920666.1| - 1.5e-103 347.0 0.0 1.6e-103 346.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|119720171|ref|YP_920666.1| - 1.2e-07 30.2 0.1 2.3e-07 29.3 0.0 1.4 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase HpcH_HpaI PF03328.14 gi|119720171|ref|YP_920666.1| - 0.014 14.6 0.0 0.031 13.4 0.0 1.5 2 0 0 2 2 2 0 HpcH/HpaI aldolase/citrate lyase family ABC2_membrane_3 PF12698.7 gi|119720172|ref|YP_920667.1| - 8.1 5.4 15.5 17 4.4 15.5 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein ATPase_2 PF01637.18 gi|119720173|ref|YP_920668.1| - 9.4e-16 58.4 0.0 2.5e-15 57.0 0.0 1.7 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|119720173|ref|YP_920668.1| - 5.1e-08 33.0 0.0 0.0031 17.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|119720173|ref|YP_920668.1| - 4.4e-07 30.4 2.3 1.1e-06 29.1 2.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119720173|ref|YP_920668.1| - 0.0097 16.2 0.0 0.48 10.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain tRNA_bind_4 PF18490.1 gi|119720173|ref|YP_920668.1| - 0.045 13.5 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 tRNA-binding domain GerE PF00196.19 gi|119720173|ref|YP_920668.1| - 0.059 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_33 PF13592.6 gi|119720173|ref|YP_920668.1| - 0.077 12.7 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix ATP_bind_3 PF01171.20 gi|119720174|ref|YP_920669.1| - 1.4e-18 67.3 0.0 5.7e-18 65.3 0.0 1.9 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|119720174|ref|YP_920669.1| - 0.0054 15.6 0.2 0.019 13.7 0.2 1.9 2 1 0 2 2 2 1 tRNA methyl transferase RecR PF02132.15 gi|119720174|ref|YP_920669.1| - 0.0081 15.7 0.9 0.0081 15.7 0.9 3.1 3 0 0 3 3 3 1 RecR protein Asn_synthase PF00733.21 gi|119720174|ref|YP_920669.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|119720174|ref|YP_920669.1| - 0.15 11.5 0.0 1 8.8 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC zf-RRN7 PF11781.8 gi|119720174|ref|YP_920669.1| - 0.32 10.7 0.2 0.32 10.7 0.2 3.3 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 C1_2 PF03107.16 gi|119720174|ref|YP_920669.1| - 0.38 11.1 2.1 18 5.7 0.1 3.0 3 0 0 3 3 3 0 C1 domain C5HCH PF17982.1 gi|119720174|ref|YP_920669.1| - 0.68 10.1 0.0 0.68 10.1 0.0 2.8 3 0 0 3 3 3 0 NSD Cys-His rich domain zf-HIT PF04438.16 gi|119720174|ref|YP_920669.1| - 1.4 8.9 14.6 1.1 9.1 0.2 4.2 3 1 1 4 4 4 0 HIT zinc finger Nudix_N_2 PF14803.6 gi|119720174|ref|YP_920669.1| - 5.3 7.0 10.2 21 5.2 0.1 3.6 3 0 0 3 3 3 0 Nudix N-terminal zf-C4_ClpX PF06689.13 gi|119720174|ref|YP_920669.1| - 9 6.3 6.4 73 3.4 0.0 3.6 4 0 0 4 4 4 0 ClpX C4-type zinc finger Glyco_hydro_57 PF03065.15 gi|119720175|ref|YP_920670.1| - 2.6e-07 30.2 0.0 4.3e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 VCBS PF13517.6 gi|119720175|ref|YP_920670.1| - 0.0043 17.6 3.5 0.76 10.4 0.6 3.3 2 0 0 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CarboxypepD_reg PF13620.6 gi|119720176|ref|YP_920671.1| - 1.4e-13 50.9 20.6 5e-09 36.3 7.5 3.4 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Big_3_5 PF16640.5 gi|119720176|ref|YP_920671.1| - 1.6e-10 41.0 28.6 6.9e-06 26.2 1.1 3.9 3 1 0 3 3 3 2 Bacterial Ig-like domain (group 3) CarbopepD_reg_2 PF13715.6 gi|119720176|ref|YP_920671.1| - 0.0001 22.2 1.0 0.0011 19.0 0.5 2.4 2 0 0 2 2 2 1 CarboxypepD_reg-like domain IFT57 PF10498.9 gi|119720176|ref|YP_920671.1| - 0.00022 20.3 1.7 0.0003 19.9 1.7 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 DUF745 PF05335.13 gi|119720176|ref|YP_920671.1| - 0.00031 20.5 2.1 0.00052 19.8 2.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF745) MG4 PF17789.1 gi|119720176|ref|YP_920671.1| - 0.002 18.2 0.2 0.017 15.3 0.1 2.3 2 0 0 2 2 2 1 Macroglobulin domain MG4 AglB_L1 PF18079.1 gi|119720176|ref|YP_920671.1| - 0.0074 16.6 1.6 0.95 9.8 0.1 3.7 3 1 1 4 4 4 1 Archaeal glycosylation protein B long peripheral domain Big_1 PF02369.16 gi|119720176|ref|YP_920671.1| - 0.0092 16.0 8.1 0.0092 16.0 8.1 3.8 4 0 0 4 4 4 1 Bacterial Ig-like domain (group 1) CooC_C PF15976.5 gi|119720176|ref|YP_920671.1| - 0.041 13.9 0.1 0.24 11.5 0.1 2.2 2 0 0 2 2 2 0 CS1-pili formation C-terminal HemX PF04375.14 gi|119720176|ref|YP_920671.1| - 0.047 13.0 0.5 0.085 12.1 0.5 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase ATG16 PF08614.11 gi|119720176|ref|YP_920671.1| - 0.07 13.3 8.2 0.1 12.8 8.2 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Spc7 PF08317.11 gi|119720176|ref|YP_920671.1| - 0.077 11.9 5.4 0.11 11.3 5.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Sortilin-Vps10 PF15902.5 gi|119720176|ref|YP_920671.1| - 0.11 11.2 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Sortilin, neurotensin receptor 3, Exonuc_VII_L PF02601.15 gi|119720176|ref|YP_920671.1| - 0.15 11.6 0.0 0.19 11.3 0.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit YscO PF07321.12 gi|119720176|ref|YP_920671.1| - 0.16 11.9 5.7 0.25 11.3 5.7 1.2 1 0 0 1 1 1 0 Type III secretion protein YscO DUF4200 PF13863.6 gi|119720176|ref|YP_920671.1| - 0.24 11.8 3.9 0.36 11.2 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Fez1 PF06818.15 gi|119720176|ref|YP_920671.1| - 0.26 11.7 3.9 0.38 11.2 3.9 1.1 1 0 0 1 1 1 0 Fez1 Med9 PF07544.13 gi|119720176|ref|YP_920671.1| - 0.37 10.9 3.6 0.63 10.2 3.6 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF1068 PF06364.12 gi|119720176|ref|YP_920671.1| - 0.38 10.6 2.3 0.62 9.9 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1068) Atg14 PF10186.9 gi|119720176|ref|YP_920671.1| - 0.4 9.7 2.7 0.57 9.2 2.7 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Cytomega_UL20A PF05984.12 gi|119720176|ref|YP_920671.1| - 0.46 10.8 3.3 0.39 11.0 1.3 1.9 2 0 0 2 2 2 0 Cytomegalovirus UL20A protein TMF_DNA_bd PF12329.8 gi|119720176|ref|YP_920671.1| - 0.54 10.3 9.5 1.1 9.2 9.5 1.5 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding ADIP PF11559.8 gi|119720176|ref|YP_920671.1| - 0.57 10.3 6.6 0.85 9.7 6.6 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Lebercilin PF15619.6 gi|119720176|ref|YP_920671.1| - 0.64 9.7 8.6 0.95 9.1 8.6 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease TolA_bind_tri PF16331.5 gi|119720176|ref|YP_920671.1| - 0.65 10.1 3.5 5.2 7.2 0.6 2.2 1 1 1 2 2 2 0 TolA binding protein trimerisation GAS PF13851.6 gi|119720176|ref|YP_920671.1| - 0.68 9.3 4.9 0.97 8.7 4.9 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding HAUS-augmin3 PF14932.6 gi|119720176|ref|YP_920671.1| - 0.78 9.3 4.1 1.1 8.8 4.1 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Cnn_1N PF07989.11 gi|119720176|ref|YP_920671.1| - 1.7 8.8 5.2 2.7 8.2 5.2 1.2 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 CCDC-167 PF15188.6 gi|119720176|ref|YP_920671.1| - 5.8 7.3 9.3 13 6.2 8.7 1.8 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 JIP_LZII PF16471.5 gi|119720176|ref|YP_920671.1| - 6.3 7.1 8.8 10 6.3 8.8 1.3 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II Lactamase_B PF00753.27 gi|119720177|ref|YP_920672.1| - 6.7e-13 49.1 0.8 1.5e-12 47.9 0.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119720177|ref|YP_920672.1| - 2.2e-10 40.4 0.0 3.4e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119720177|ref|YP_920672.1| - 0.025 14.5 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Cas_DxTHG PF09455.10 gi|119720178|ref|YP_920673.1| - 5.9e-16 59.0 0.0 1.6e-14 54.3 0.0 2.0 2 0 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family ABC_tran PF00005.27 gi|119720179|ref|YP_920674.1| - 7.6e-22 78.3 0.0 1.1e-21 77.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720179|ref|YP_920674.1| - 4.2e-10 39.9 0.4 5.4e-07 29.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MobB PF03205.14 gi|119720179|ref|YP_920674.1| - 0.034 14.0 0.1 12 5.8 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4162 PF13732.6 gi|119720179|ref|YP_920674.1| - 0.085 13.6 0.0 0.19 12.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_33 PF13671.6 gi|119720179|ref|YP_920674.1| - 0.12 12.6 0.0 0.2 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|119720179|ref|YP_920674.1| - 0.14 12.6 0.1 0.24 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119720179|ref|YP_920674.1| - 0.15 11.6 1.0 0.33 10.5 1.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|119720179|ref|YP_920674.1| - 0.15 11.4 0.1 7.9 5.8 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.7 gi|119720180|ref|YP_920675.1| - 8.8e-16 58.0 19.6 2.4e-15 56.6 19.6 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|119720180|ref|YP_920675.1| - 0.0001 21.6 15.3 0.00018 20.8 15.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|119720180|ref|YP_920675.1| - 0.0012 18.4 4.5 0.0026 17.4 4.5 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|119720180|ref|YP_920675.1| - 0.0058 16.6 8.3 0.0058 16.6 8.3 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein SPC25 PF06703.11 gi|119720180|ref|YP_920675.1| - 5.2 6.8 6.0 13 5.6 6.0 1.6 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF3883 PF13020.6 gi|119720181|ref|YP_920676.1| - 4.1e-12 46.0 1.1 5.3e-12 45.6 1.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) DUF4550 PF15084.6 gi|119720181|ref|YP_920676.1| - 0.063 13.7 0.3 0.08 13.4 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4550) TMF_DNA_bd PF12329.8 gi|119720182|ref|YP_920677.1| - 4e-10 39.5 2.9 5.4e-06 26.3 0.1 2.3 1 1 1 2 2 2 2 TATA element modulatory factor 1 DNA binding DUF1664 PF07889.12 gi|119720182|ref|YP_920677.1| - 1.3e-08 34.9 1.3 0.00015 21.8 0.4 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|119720182|ref|YP_920677.1| - 5.2e-08 33.0 4.6 0.00044 20.4 3.5 2.4 1 1 1 2 2 2 2 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|119720182|ref|YP_920677.1| - 1.1e-07 32.0 0.7 0.03 14.6 0.1 3.3 1 1 1 2 2 2 2 ABC transporter C-terminal domain BLOC1_2 PF10046.9 gi|119720182|ref|YP_920677.1| - 1.1e-07 32.0 3.0 2.7e-06 27.6 1.2 2.6 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.8 gi|119720182|ref|YP_920677.1| - 1.4e-07 31.1 0.2 6.6e-07 28.9 0.1 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) FlaC_arch PF05377.11 gi|119720182|ref|YP_920677.1| - 1.4e-07 31.7 0.8 0.0042 17.4 0.3 3.0 1 1 2 3 3 3 2 Flagella accessory protein C (FlaC) ATG16 PF08614.11 gi|119720182|ref|YP_920677.1| - 3.3e-07 30.7 1.9 3.7e-07 30.6 1.9 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DivIC PF04977.15 gi|119720182|ref|YP_920677.1| - 3.3e-07 30.0 3.2 0.013 15.2 0.6 3.1 1 1 2 3 3 3 2 Septum formation initiator DUF4988 PF16378.5 gi|119720182|ref|YP_920677.1| - 6.8e-07 29.1 2.5 0.011 15.4 0.2 3.0 1 1 2 3 3 3 3 Domain of unknown function Prefoldin_2 PF01920.20 gi|119720182|ref|YP_920677.1| - 1.2e-06 28.4 0.6 0.21 11.5 0.1 3.1 1 1 2 3 3 3 1 Prefoldin subunit bZIP_1 PF00170.21 gi|119720182|ref|YP_920677.1| - 1.6e-06 28.1 0.2 0.047 13.8 0.0 3.0 1 1 3 4 4 4 2 bZIP transcription factor DUF16 PF01519.16 gi|119720182|ref|YP_920677.1| - 1.8e-06 28.4 0.9 6.3e-06 26.6 0.9 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF16 Spc7 PF08317.11 gi|119720182|ref|YP_920677.1| - 1.9e-06 27.0 0.6 2.5e-06 26.6 0.6 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein EzrA PF06160.12 gi|119720182|ref|YP_920677.1| - 2.6e-06 25.9 0.2 1.3e-05 23.7 0.2 1.8 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA Lzipper-MIP1 PF14389.6 gi|119720182|ref|YP_920677.1| - 3.7e-06 27.1 0.9 0.0012 19.1 0.2 3.0 1 1 1 3 3 3 1 Leucine-zipper of ternary complex factor MIP1 SlyX PF04102.12 gi|119720182|ref|YP_920677.1| - 3.9e-06 27.4 0.7 0.00053 20.6 0.2 2.6 1 1 1 2 2 2 1 SlyX FliD_C PF07195.12 gi|119720182|ref|YP_920677.1| - 4.5e-06 26.3 0.6 0.00045 19.7 0.6 2.5 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus CENP-F_leu_zip PF10473.9 gi|119720182|ref|YP_920677.1| - 4.9e-06 26.6 1.8 1.6e-05 24.9 1.8 1.7 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.12 gi|119720182|ref|YP_920677.1| - 5.9e-06 26.4 0.0 0.00059 19.9 0.0 2.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus BRE1 PF08647.11 gi|119720182|ref|YP_920677.1| - 9.3e-06 25.6 0.5 0.015 15.3 0.1 2.1 1 1 1 2 2 2 2 BRE1 E3 ubiquitin ligase Laminin_I PF06008.14 gi|119720182|ref|YP_920677.1| - 1e-05 25.4 0.0 1.4e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Laminin Domain I DUF3552 PF12072.8 gi|119720182|ref|YP_920677.1| - 1.2e-05 24.8 2.0 2.1e-05 24.0 2.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) KASH_CCD PF14662.6 gi|119720182|ref|YP_920677.1| - 1.3e-05 25.1 0.3 7e-05 22.7 0.1 1.8 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 or KASH DUF4140 PF13600.6 gi|119720182|ref|YP_920677.1| - 1.7e-05 25.2 6.6 0.18 12.3 4.4 3.1 1 1 1 2 2 2 1 N-terminal domain of unknown function (DUF4140) NPV_P10 PF05531.12 gi|119720182|ref|YP_920677.1| - 1.8e-05 25.1 0.8 0.003 18.0 0.5 2.7 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.6 gi|119720182|ref|YP_920677.1| - 2.3e-05 24.7 0.3 5.5e-05 23.5 0.3 1.8 1 1 0 1 1 1 1 Snapin/Pallidin Tektin PF03148.14 gi|119720182|ref|YP_920677.1| - 2.5e-05 23.2 2.7 0.00038 19.3 0.5 2.0 1 1 1 2 2 2 1 Tektin family Spc29 PF17082.5 gi|119720182|ref|YP_920677.1| - 2.8e-05 24.1 3.8 0.064 13.1 1.3 2.1 1 1 1 2 2 2 2 Spindle Pole Component 29 DUF4795 PF16043.5 gi|119720182|ref|YP_920677.1| - 2.8e-05 23.8 0.4 0.001 18.7 0.3 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) ADIP PF11559.8 gi|119720182|ref|YP_920677.1| - 3.1e-05 24.1 0.4 0.019 15.0 0.1 2.1 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding Csm1_N PF18504.1 gi|119720182|ref|YP_920677.1| - 3.7e-05 24.0 3.0 0.34 11.3 0.1 3.5 2 1 2 4 4 3 1 Csm1 N-terminal domain Tropomyosin_1 PF12718.7 gi|119720182|ref|YP_920677.1| - 4.1e-05 23.8 2.8 0.00016 21.8 2.8 1.9 1 1 0 1 1 1 1 Tropomyosin like Fib_alpha PF08702.10 gi|119720182|ref|YP_920677.1| - 5e-05 23.5 0.2 8.4e-05 22.8 0.2 1.4 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Nup54 PF13874.6 gi|119720182|ref|YP_920677.1| - 5.2e-05 23.4 0.4 0.0002 21.5 0.2 1.8 1 1 1 2 2 1 1 Nucleoporin complex subunit 54 MbeD_MobD PF04899.12 gi|119720182|ref|YP_920677.1| - 5.8e-05 23.1 0.1 0.38 10.9 0.1 3.2 1 1 1 2 2 2 1 MbeD/MobD like DUF5082 PF16888.5 gi|119720182|ref|YP_920677.1| - 6.4e-05 23.2 1.1 0.13 12.5 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF5082) CLZ PF16526.5 gi|119720182|ref|YP_920677.1| - 6.4e-05 23.2 2.1 0.2 12.0 0.2 2.9 1 1 1 2 2 2 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MscS_porin PF12795.7 gi|119720182|ref|YP_920677.1| - 6.9e-05 22.5 0.1 0.031 13.8 0.0 2.1 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain HSBP1 PF06825.12 gi|119720182|ref|YP_920677.1| - 8.7e-05 22.3 15.1 0.034 14.0 0.9 3.9 1 1 3 4 4 3 2 Heat shock factor binding protein 1 AAA_13 PF13166.6 gi|119720182|ref|YP_920677.1| - 0.00011 21.1 0.3 0.00059 18.6 0.3 1.8 1 1 0 1 1 1 1 AAA domain Prefoldin PF02996.17 gi|119720182|ref|YP_920677.1| - 0.00011 22.1 1.3 0.073 13.0 0.2 2.9 1 1 2 3 3 3 1 Prefoldin subunit DUF948 PF06103.11 gi|119720182|ref|YP_920677.1| - 0.00011 22.3 0.0 0.062 13.6 0.0 2.5 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) bZIP_2 PF07716.15 gi|119720182|ref|YP_920677.1| - 0.00015 21.8 0.1 5.7 7.1 0.2 3.4 1 1 2 3 3 3 0 Basic region leucine zipper GAS PF13851.6 gi|119720182|ref|YP_920677.1| - 0.00017 21.0 0.2 0.0021 17.5 0.2 2.0 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|119720182|ref|YP_920677.1| - 0.00018 21.6 0.3 0.00055 20.0 0.3 1.8 1 1 0 1 1 1 1 Laminin Domain II DUF812 PF05667.11 gi|119720182|ref|YP_920677.1| - 0.00018 20.5 0.1 0.00028 19.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Gp58 PF07902.11 gi|119720182|ref|YP_920677.1| - 0.00019 19.9 0.5 0.00067 18.1 0.4 1.7 1 1 1 2 2 2 1 gp58-like protein APG6_N PF17675.1 gi|119720182|ref|YP_920677.1| - 0.00019 22.0 1.6 0.0067 17.0 1.1 2.1 1 1 0 1 1 1 1 Apg6 coiled-coil region DUF4407 PF14362.6 gi|119720182|ref|YP_920677.1| - 0.0002 20.8 0.1 0.00026 20.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) ZapB PF06005.12 gi|119720182|ref|YP_920677.1| - 0.0002 21.7 0.4 0.19 12.2 0.1 2.5 1 1 1 2 2 2 1 Cell division protein ZapB Atg14 PF10186.9 gi|119720182|ref|YP_920677.1| - 0.00021 20.5 1.5 0.00031 19.9 1.5 1.4 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2730 PF10805.8 gi|119720182|ref|YP_920677.1| - 0.00022 21.3 3.0 0.026 14.6 0.4 2.7 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) Seryl_tRNA_N PF02403.22 gi|119720182|ref|YP_920677.1| - 0.00022 21.4 6.6 0.0035 17.5 1.4 2.1 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain TACC_C PF05010.14 gi|119720182|ref|YP_920677.1| - 0.00023 21.0 0.1 0.46 10.2 0.0 2.0 1 1 1 2 2 2 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF2802 PF10975.8 gi|119720182|ref|YP_920677.1| - 0.00023 21.2 0.6 1.3 9.2 0.0 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2802) Myosin_tail_1 PF01576.19 gi|119720182|ref|YP_920677.1| - 0.00025 19.1 1.2 0.00028 18.9 1.2 1.0 1 0 0 1 1 1 1 Myosin tail Jnk-SapK_ap_N PF09744.9 gi|119720182|ref|YP_920677.1| - 0.00025 21.3 0.3 0.015 15.5 0.1 2.1 1 1 1 2 2 2 1 JNK_SAPK-associated protein-1 Prefoldin_3 PF13758.6 gi|119720182|ref|YP_920677.1| - 0.00026 21.0 4.6 0.13 12.3 0.6 3.2 1 1 1 2 2 2 1 Prefoldin subunit DUF4200 PF13863.6 gi|119720182|ref|YP_920677.1| - 0.00026 21.4 0.5 0.00094 19.6 0.5 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.12 gi|119720182|ref|YP_920677.1| - 0.0003 20.9 0.2 0.0011 19.1 0.1 1.9 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein DUF2721 PF11026.8 gi|119720182|ref|YP_920677.1| - 0.00038 20.3 5.9 0.013 15.3 5.9 2.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2721) Uds1 PF15456.6 gi|119720182|ref|YP_920677.1| - 0.00039 20.6 2.1 0.00092 19.4 1.9 2.1 1 1 0 1 1 1 1 Up-regulated During Septation LegC3_N PF18654.1 gi|119720182|ref|YP_920677.1| - 0.00039 19.8 1.8 0.0015 17.8 1.8 1.8 1 1 0 1 1 1 1 LegC3 N-terminal coiled-coil domain Filament PF00038.21 gi|119720182|ref|YP_920677.1| - 0.00046 19.9 1.2 0.19 11.3 0.1 1.7 1 1 1 2 2 2 2 Intermediate filament protein DUF4618 PF15397.6 gi|119720182|ref|YP_920677.1| - 0.00051 19.5 0.2 0.92 8.9 0.0 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) DHR10 PF18595.1 gi|119720182|ref|YP_920677.1| - 0.00052 20.1 2.3 0.013 15.6 2.3 2.5 1 1 1 2 2 2 1 Designed helical repeat protein 10 domain Helo_like_N PF17111.5 gi|119720182|ref|YP_920677.1| - 0.00056 19.3 0.4 0.041 13.3 0.0 2.3 1 1 1 2 2 2 1 Fungal N-terminal domain of STAND proteins DUF4472 PF14739.6 gi|119720182|ref|YP_920677.1| - 0.00056 20.6 0.1 0.05 14.3 0.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4472) DUF3782 PF12644.7 gi|119720182|ref|YP_920677.1| - 0.00058 20.0 3.2 2 8.6 0.2 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF3782) Bacillus_HBL PF05791.11 gi|119720182|ref|YP_920677.1| - 0.00066 19.5 0.0 0.096 12.5 0.0 2.2 1 1 2 3 3 2 2 Bacillus haemolytic enterotoxin (HBL) Spectrin PF00435.21 gi|119720182|ref|YP_920677.1| - 0.00067 20.1 0.2 0.0095 16.4 0.1 2.2 1 1 1 2 2 2 1 Spectrin repeat MRF_C1 PF13887.6 gi|119720182|ref|YP_920677.1| - 0.00074 18.6 3.4 1.5 8.1 0.0 4.4 1 1 5 6 6 6 0 Myelin gene regulatory factor -C-terminal domain 1 HrpB7 PF09486.10 gi|119720182|ref|YP_920677.1| - 0.00075 19.9 3.1 0.11 12.9 0.2 2.3 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) DUF3584 PF12128.8 gi|119720182|ref|YP_920677.1| - 0.00076 17.1 0.6 0.00088 16.9 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) HemX PF04375.14 gi|119720182|ref|YP_920677.1| - 0.00078 18.8 0.0 0.4 9.9 0.0 2.1 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase Lebercilin PF15619.6 gi|119720182|ref|YP_920677.1| - 0.0008 19.1 1.4 0.0033 17.1 1.5 2.0 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Tropomyosin PF00261.20 gi|119720182|ref|YP_920677.1| - 0.00083 18.8 4.4 0.0029 17.0 4.4 1.7 1 1 0 1 1 1 1 Tropomyosin Cluap1 PF10234.9 gi|119720182|ref|YP_920677.1| - 0.00091 18.7 3.3 0.13 11.6 0.6 2.1 1 1 1 2 2 2 2 Clusterin-associated protein-1 KLRAQ PF10205.9 gi|119720182|ref|YP_920677.1| - 0.00096 19.4 0.9 0.042 14.1 0.3 2.4 1 1 1 2 2 2 1 Predicted coiled-coil domain-containing protein DivIVA PF05103.13 gi|119720182|ref|YP_920677.1| - 0.0011 19.0 0.5 0.87 9.7 0.1 2.8 1 1 2 3 3 3 0 DivIVA protein DASH_Spc19 PF08287.11 gi|119720182|ref|YP_920677.1| - 0.0012 18.7 3.3 0.066 13.1 0.3 2.5 1 1 1 2 2 2 1 Spc19 Transcrip_act PF04949.13 gi|119720182|ref|YP_920677.1| - 0.0013 18.6 3.7 0.0039 17.1 3.7 1.9 1 1 0 1 1 1 1 Transcriptional activator HOOK PF05622.12 gi|119720182|ref|YP_920677.1| - 0.0013 17.0 1.3 0.0014 16.9 1.3 1.0 1 0 0 1 1 1 1 HOOK protein Fmp27_WPPW PF10359.9 gi|119720182|ref|YP_920677.1| - 0.0013 17.6 1.8 0.0087 15.0 0.6 2.0 1 1 1 2 2 2 1 RNA pol II promoter Fmp27 protein domain FemAB PF02388.16 gi|119720182|ref|YP_920677.1| - 0.0015 17.5 0.0 0.0019 17.1 0.0 1.2 1 0 0 1 1 1 1 FemAB family PI3K_P85_iSH2 PF16454.5 gi|119720182|ref|YP_920677.1| - 0.0016 18.1 0.3 0.004 16.8 0.3 1.7 1 1 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF4763 PF15960.5 gi|119720182|ref|YP_920677.1| - 0.0016 17.8 0.2 0.1 11.9 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4763) TMPIT PF07851.13 gi|119720182|ref|YP_920677.1| - 0.0017 17.7 0.0 0.0022 17.3 0.0 1.1 1 0 0 1 1 1 1 TMPIT-like protein Exonuc_VII_L PF02601.15 gi|119720182|ref|YP_920677.1| - 0.0018 17.9 0.2 0.0021 17.7 0.2 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit GrpE PF01025.19 gi|119720182|ref|YP_920677.1| - 0.0019 17.9 0.2 1.4 8.5 0.0 2.2 1 1 1 2 2 2 0 GrpE CCDC154 PF15450.6 gi|119720182|ref|YP_920677.1| - 0.002 16.7 3.2 0.0024 16.5 3.2 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 154 DUF4094 PF13334.6 gi|119720182|ref|YP_920677.1| - 0.0021 18.4 1.3 2.8 8.4 0.2 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) FliJ PF02050.16 gi|119720182|ref|YP_920677.1| - 0.0021 18.3 0.0 0.0041 17.3 0.0 1.5 1 1 0 1 1 1 1 Flagellar FliJ protein Ax_dynein_light PF10211.9 gi|119720182|ref|YP_920677.1| - 0.0021 18.0 0.6 0.38 10.7 0.6 2.5 1 1 0 1 1 1 1 Axonemal dynein light chain DASH_Dam1 PF08653.10 gi|119720182|ref|YP_920677.1| - 0.0022 17.7 0.4 3.7 7.4 0.1 3.2 1 1 2 3 3 3 0 DASH complex subunit Dam1 AIP3 PF03915.13 gi|119720182|ref|YP_920677.1| - 0.0022 17.1 2.7 0.0028 16.8 2.7 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 MAD PF05557.13 gi|119720182|ref|YP_920677.1| - 0.0024 16.3 0.3 0.0036 15.8 0.3 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein FmiP_Thoc5 PF09766.9 gi|119720182|ref|YP_920677.1| - 0.0026 17.1 0.8 0.044 13.1 0.1 2.0 1 1 1 2 2 2 1 Fms-interacting protein/Thoc5 Occludin_ELL PF07303.13 gi|119720182|ref|YP_920677.1| - 0.0029 18.3 0.1 0.26 12.1 0.1 2.7 1 1 1 2 2 2 1 Occludin homology domain Nup88 PF10168.9 gi|119720182|ref|YP_920677.1| - 0.0033 15.3 0.6 0.0038 15.1 0.6 1.1 1 0 0 1 1 1 1 Nuclear pore component FPP PF05911.11 gi|119720182|ref|YP_920677.1| - 0.0038 15.5 0.2 0.0043 15.3 0.2 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil Snf7 PF03357.21 gi|119720182|ref|YP_920677.1| - 0.0039 16.8 2.4 0.068 12.8 1.0 2.5 1 1 2 3 3 2 1 Snf7 CALCOCO1 PF07888.11 gi|119720182|ref|YP_920677.1| - 0.004 16.1 3.8 0.0047 15.9 3.8 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like SHE3 PF17078.5 gi|119720182|ref|YP_920677.1| - 0.0042 16.8 0.6 0.29 10.8 0.3 2.1 1 1 1 2 2 2 1 SWI5-dependent HO expression protein 3 DUF730 PF05325.11 gi|119720182|ref|YP_920677.1| - 0.0049 16.9 0.1 0.099 12.7 0.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF730) Spc24 PF08286.11 gi|119720182|ref|YP_920677.1| - 0.0055 16.9 0.5 1.1 9.6 0.5 2.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 CorA PF01544.18 gi|119720182|ref|YP_920677.1| - 0.0055 16.1 5.5 0.72 9.1 0.1 2.3 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein TMF_TATA_bd PF12325.8 gi|119720182|ref|YP_920677.1| - 0.0058 16.8 0.4 0.037 14.2 0.4 2.1 1 1 0 1 1 1 1 TATA element modulatory factor 1 TATA binding HMMR_N PF15905.5 gi|119720182|ref|YP_920677.1| - 0.0065 16.0 0.2 0.008 15.7 0.2 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal CENP-Q PF13094.6 gi|119720182|ref|YP_920677.1| - 0.0067 16.7 1.2 0.013 15.7 1.2 1.6 1 1 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit PspA_IM30 PF04012.12 gi|119720182|ref|YP_920677.1| - 0.0072 15.9 0.1 1.1 8.8 0.0 2.1 1 1 1 2 2 2 0 PspA/IM30 family Hemagglutinin PF00509.18 gi|119720182|ref|YP_920677.1| - 0.0076 14.7 0.5 0.79 8.0 0.4 2.1 1 1 1 2 2 2 0 Haemagglutinin Sipho_Gp157 PF05565.11 gi|119720182|ref|YP_920677.1| - 0.0077 16.3 1.4 0.024 14.6 1.4 1.9 1 1 0 1 1 1 1 Siphovirus Gp157 CdvA PF18822.1 gi|119720182|ref|YP_920677.1| - 0.0077 16.1 3.1 0.35 10.7 2.2 3.0 1 1 1 2 2 2 1 CdvA-like coiled-coil domain RPW8 PF05659.11 gi|119720182|ref|YP_920677.1| - 0.0079 15.9 0.9 0.047 13.4 0.4 2.3 1 1 1 2 2 2 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 Vac_Fusion PF02346.16 gi|119720182|ref|YP_920677.1| - 0.0082 15.8 3.5 0.08 12.6 0.0 3.2 2 1 1 3 3 3 1 Chordopoxvirus multifunctional envelope protein A27 HAUS-augmin3 PF14932.6 gi|119720182|ref|YP_920677.1| - 0.0083 15.7 0.1 0.024 14.2 0.1 1.7 1 1 1 2 2 2 1 HAUS augmin-like complex subunit 3 FlxA PF14282.6 gi|119720182|ref|YP_920677.1| - 0.0087 16.0 0.0 0.56 10.2 0.0 2.5 1 1 0 1 1 1 1 FlxA-like protein FapA PF03961.13 gi|119720182|ref|YP_920677.1| - 0.0088 14.7 1.0 0.97 8.0 0.1 1.9 1 1 1 2 2 2 0 Flagellar Assembly Protein A RmuC PF02646.16 gi|119720182|ref|YP_920677.1| - 0.0088 15.2 0.2 0.29 10.2 0.0 2.0 1 1 1 2 2 2 1 RmuC family Vps5 PF09325.10 gi|119720182|ref|YP_920677.1| - 0.0091 15.6 1.5 1.3 8.5 0.3 2.2 1 1 1 2 2 2 0 Vps5 C terminal like COG2 PF06148.11 gi|119720182|ref|YP_920677.1| - 0.0091 16.1 0.4 1.8 8.7 0.1 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 phiKZ_IP PF12699.7 gi|119720182|ref|YP_920677.1| - 0.0091 15.2 3.1 0.21 10.7 3.1 2.4 1 1 0 1 1 1 1 phiKZ-like phage internal head proteins DUF1640 PF07798.11 gi|119720182|ref|YP_920677.1| - 0.0093 16.0 2.5 0.016 15.3 2.5 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) Phage_tail_NK PF16532.5 gi|119720182|ref|YP_920677.1| - 0.0097 15.6 3.1 1.4 8.6 1.1 2.9 1 1 1 2 2 2 0 Sf6-type phage tail needle knob or tip of some Caudovirales DegS PF05384.11 gi|119720182|ref|YP_920677.1| - 0.0098 15.4 2.3 0.21 11.1 2.3 2.4 1 1 0 1 1 1 1 Sensor protein DegS DUF1465 PF07323.12 gi|119720182|ref|YP_920677.1| - 0.0099 15.7 2.6 0.48 10.2 2.3 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1465) MerR-DNA-bind PF09278.11 gi|119720182|ref|YP_920677.1| - 0.01 16.4 9.7 1.1 9.9 0.6 4.3 1 1 2 3 3 3 0 MerR, DNA binding DUF4201 PF13870.6 gi|119720182|ref|YP_920677.1| - 0.011 15.5 2.3 0.16 11.7 1.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Taxilin PF09728.9 gi|119720182|ref|YP_920677.1| - 0.011 15.0 0.2 0.31 10.2 0.1 2.0 1 1 2 3 3 3 0 Myosin-like coiled-coil protein FUSC PF04632.12 gi|119720182|ref|YP_920677.1| - 0.011 14.3 0.7 0.014 13.9 0.7 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF641 PF04859.12 gi|119720182|ref|YP_920677.1| - 0.011 16.1 0.9 0.32 11.3 0.2 2.4 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) Syntaxin_2 PF14523.6 gi|119720182|ref|YP_920677.1| - 0.012 16.0 1.4 0.47 10.8 0.9 2.3 1 1 1 2 2 2 0 Syntaxin-like protein DUF4164 PF13747.6 gi|119720182|ref|YP_920677.1| - 0.013 15.8 15.4 0.14 12.4 3.9 2.9 1 1 2 3 3 2 0 Domain of unknown function (DUF4164) UPF0242 PF06785.11 gi|119720182|ref|YP_920677.1| - 0.013 15.6 0.7 0.013 15.6 0.7 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus YscO PF07321.12 gi|119720182|ref|YP_920677.1| - 0.013 15.4 1.7 0.7 9.8 0.4 2.3 1 1 1 2 2 2 0 Type III secretion protein YscO Syntaxin PF00804.25 gi|119720182|ref|YP_920677.1| - 0.013 15.1 0.4 0.032 13.9 0.3 1.7 1 1 1 2 2 2 0 Syntaxin CCDC-167 PF15188.6 gi|119720182|ref|YP_920677.1| - 0.014 15.7 6.9 0.44 10.9 3.0 3.3 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DUF2959 PF11172.8 gi|119720182|ref|YP_920677.1| - 0.018 15.2 0.3 5.2 7.1 0.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) Sec3_C PF09763.9 gi|119720182|ref|YP_920677.1| - 0.018 13.4 0.5 0.027 12.9 0.5 1.3 1 1 0 1 1 1 0 Exocyst complex component Sec3 DASH_Spc34 PF08657.10 gi|119720182|ref|YP_920677.1| - 0.019 14.8 0.1 0.23 11.2 0.1 2.4 1 1 0 1 1 1 0 DASH complex subunit Spc34 KxDL PF10241.9 gi|119720182|ref|YP_920677.1| - 0.019 15.2 0.5 0.66 10.3 0.2 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF241 PF03087.14 gi|119720182|ref|YP_920677.1| - 0.019 14.8 1.5 0.56 10.0 1.5 2.4 1 1 0 1 1 1 0 Arabidopsis protein of unknown function Phage_GP20 PF06810.11 gi|119720182|ref|YP_920677.1| - 0.019 14.8 0.4 0.35 10.7 0.2 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 JIP_LZII PF16471.5 gi|119720182|ref|YP_920677.1| - 0.019 15.1 2.7 0.15 12.2 1.0 2.4 1 1 2 3 3 3 0 JNK-interacting protein leucine zipper II TolA_bind_tri PF16331.5 gi|119720182|ref|YP_920677.1| - 0.02 15.0 1.3 0.36 10.9 0.3 2.5 1 1 1 2 2 2 0 TolA binding protein trimerisation Allexi_40kDa PF05549.11 gi|119720182|ref|YP_920677.1| - 0.021 14.4 0.3 0.068 12.7 0.2 1.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF677 PF05055.12 gi|119720182|ref|YP_920677.1| - 0.022 13.7 1.0 1.1 8.1 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF677) DUF4446 PF14584.6 gi|119720182|ref|YP_920677.1| - 0.023 14.7 0.3 0.47 10.4 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Vps51 PF08700.11 gi|119720182|ref|YP_920677.1| - 0.024 14.7 0.2 18 5.5 0.1 3.1 1 1 3 4 4 4 0 Vps51/Vps67 TssO PF17561.2 gi|119720182|ref|YP_920677.1| - 0.026 14.6 0.1 0.99 9.5 0.1 2.6 1 1 0 1 1 1 0 Type VI secretion system, TssO Mod_r PF07200.13 gi|119720182|ref|YP_920677.1| - 0.026 14.6 0.1 0.12 12.5 0.1 2.0 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein PRKG1_interact PF15898.5 gi|119720182|ref|YP_920677.1| - 0.026 15.4 1.9 0.11 13.4 0.6 2.5 2 1 0 2 2 1 0 cGMP-dependent protein kinase interacting domain Swi5 PF07061.11 gi|119720182|ref|YP_920677.1| - 0.029 14.5 0.1 3.5 7.8 0.1 2.7 1 1 2 3 3 3 0 Swi5 DUF724 PF05266.14 gi|119720182|ref|YP_920677.1| - 0.029 14.2 0.1 0.041 13.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Phasin PF05597.11 gi|119720182|ref|YP_920677.1| - 0.029 14.4 3.4 1.4 9.0 0.9 3.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Dynactin_p22 PF07426.11 gi|119720182|ref|YP_920677.1| - 0.033 14.0 0.3 0.63 9.9 0.1 2.5 1 1 1 2 2 2 0 Dynactin subunit p22 Rab5-bind PF09311.11 gi|119720182|ref|YP_920677.1| - 0.034 13.6 0.3 0.041 13.3 0.3 1.1 1 0 0 1 1 1 0 Rabaptin-like protein DUF390 PF04094.14 gi|119720182|ref|YP_920677.1| - 0.035 12.4 1.8 0.038 12.3 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF390) YabA PF06156.13 gi|119720182|ref|YP_920677.1| - 0.036 14.7 0.1 1.2 9.8 0.1 2.4 1 1 0 1 1 1 0 Initiation control protein YabA HHH_8 PF14716.6 gi|119720182|ref|YP_920677.1| - 0.038 14.4 1.2 19 5.7 1.2 3.3 1 1 0 1 1 1 0 Helix-hairpin-helix domain Enkurin PF13864.6 gi|119720182|ref|YP_920677.1| - 0.038 14.4 0.8 0.59 10.6 0.8 2.3 1 1 0 1 1 1 0 Calmodulin-binding TPD52 PF04201.15 gi|119720182|ref|YP_920677.1| - 0.039 13.6 0.6 0.3 10.7 0.2 2.0 1 1 1 2 2 2 0 Tumour protein D52 family Med9 PF07544.13 gi|119720182|ref|YP_920677.1| - 0.041 14.0 3.8 0.43 10.7 1.2 2.7 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Cep57_MT_bd PF06657.13 gi|119720182|ref|YP_920677.1| - 0.043 14.3 3.7 0.17 12.3 2.2 2.6 1 1 1 2 2 1 0 Centrosome microtubule-binding domain of Cep57 HIP1_clath_bdg PF16515.5 gi|119720182|ref|YP_920677.1| - 0.043 14.4 0.1 0.71 10.5 0.0 2.1 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Cnn_1N PF07989.11 gi|119720182|ref|YP_920677.1| - 0.044 13.9 1.2 0.94 9.7 1.3 2.5 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 V_ATPase_I PF01496.19 gi|119720182|ref|YP_920677.1| - 0.046 11.6 0.0 0.058 11.3 0.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fzo_mitofusin PF04799.13 gi|119720182|ref|YP_920677.1| - 0.047 13.2 0.2 0.31 10.6 0.1 2.2 1 1 1 2 2 2 0 fzo-like conserved region Syntaxin-6_N PF09177.11 gi|119720182|ref|YP_920677.1| - 0.048 14.2 2.7 0.86 10.2 0.4 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Med4 PF10018.9 gi|119720182|ref|YP_920677.1| - 0.048 13.3 3.9 1.4 8.6 2.0 2.7 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 SKA1 PF07160.12 gi|119720182|ref|YP_920677.1| - 0.049 13.5 0.1 7.6 6.3 0.1 2.1 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 COG6 PF06419.11 gi|119720182|ref|YP_920677.1| - 0.051 11.8 0.2 0.076 11.2 0.1 1.3 1 1 0 1 1 1 0 Conserved oligomeric complex COG6 HBM PF16591.5 gi|119720182|ref|YP_920677.1| - 0.053 13.0 0.4 0.11 11.9 0.4 1.6 1 1 0 1 1 1 0 Helical bimodular sensor domain Wtap PF17098.5 gi|119720182|ref|YP_920677.1| - 0.053 13.4 0.2 0.14 12.1 0.2 1.6 1 1 0 1 1 1 0 WTAP/Mum2p family APG17 PF04108.12 gi|119720182|ref|YP_920677.1| - 0.055 12.6 1.8 0.83 8.7 0.4 1.8 1 1 1 2 2 2 0 Autophagy protein Apg17 Nsp1_C PF05064.13 gi|119720182|ref|YP_920677.1| - 0.063 13.1 0.2 1.2 9.0 0.1 2.1 1 1 1 2 2 2 0 Nsp1-like C-terminal region UPF0449 PF15136.6 gi|119720182|ref|YP_920677.1| - 0.063 13.7 0.2 0.92 10.0 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 TraF_2 PF13729.6 gi|119720182|ref|YP_920677.1| - 0.064 12.6 2.7 0.11 11.8 2.1 1.7 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF4337 PF14235.6 gi|119720182|ref|YP_920677.1| - 0.064 13.4 0.8 0.62 10.2 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) TelA PF05816.11 gi|119720182|ref|YP_920677.1| - 0.066 12.3 0.2 0.097 11.7 0.2 1.3 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) DUF1202 PF06717.11 gi|119720182|ref|YP_920677.1| - 0.066 12.6 0.1 3.2 7.1 0.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1202) Sec34 PF04136.15 gi|119720182|ref|YP_920677.1| - 0.067 13.1 0.0 0.28 11.0 0.0 1.7 1 1 0 1 1 1 0 Sec34-like family DUF4686 PF15742.5 gi|119720182|ref|YP_920677.1| - 0.068 12.3 0.1 0.086 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) MIP-T3_C PF17749.1 gi|119720182|ref|YP_920677.1| - 0.071 13.1 0.5 0.52 10.3 0.3 2.1 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Vps53_N PF04100.12 gi|119720182|ref|YP_920677.1| - 0.073 12.0 1.2 0.083 11.8 1.2 1.2 1 0 0 1 1 1 0 Vps53-like, N-terminal IFT57 PF10498.9 gi|119720182|ref|YP_920677.1| - 0.074 12.0 0.1 0.097 11.6 0.1 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Noelin-1 PF12308.8 gi|119720182|ref|YP_920677.1| - 0.074 13.0 0.3 0.32 11.0 0.1 1.9 1 1 2 3 3 2 0 Neurogenesis glycoprotein TRAF_BIRC3_bd PF16673.5 gi|119720182|ref|YP_920677.1| - 0.074 12.9 0.7 3.1 7.7 0.2 2.8 1 1 1 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain DUF2884 PF11101.8 gi|119720182|ref|YP_920677.1| - 0.077 12.5 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) TMCO5 PF14992.6 gi|119720182|ref|YP_920677.1| - 0.08 12.5 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 TMCO5 family Matrilin_ccoil PF10393.9 gi|119720182|ref|YP_920677.1| - 0.081 12.8 0.8 9.2 6.2 0.2 3.0 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Cast PF10174.9 gi|119720182|ref|YP_920677.1| - 0.086 11.1 6.9 0.14 10.4 4.3 1.8 1 1 1 2 2 2 0 RIM-binding protein of the cytomatrix active zone Tnp_22_trimer PF17489.2 gi|119720182|ref|YP_920677.1| - 0.086 12.8 3.7 1.3 9.0 0.4 3.1 2 1 1 3 3 2 0 L1 transposable element trimerization domain YkyA PF10368.9 gi|119720182|ref|YP_920677.1| - 0.088 12.5 0.2 0.16 11.6 0.2 1.5 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein T3SSipB PF16535.5 gi|119720182|ref|YP_920677.1| - 0.089 13.3 0.0 0.35 11.3 0.0 1.9 1 1 0 1 1 1 0 Type III cell invasion protein SipB CREPT PF16566.5 gi|119720182|ref|YP_920677.1| - 0.089 13.0 0.4 0.71 10.0 0.3 2.4 1 1 1 2 2 1 0 Cell-cycle alteration and expression-elevated protein in tumour DUF465 PF04325.13 gi|119720182|ref|YP_920677.1| - 0.095 12.8 6.2 2.7 8.1 0.1 3.7 1 1 3 4 4 3 0 Protein of unknown function (DUF465) DHC_N1 PF08385.12 gi|119720182|ref|YP_920677.1| - 0.1 11.2 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 CASP_C PF08172.12 gi|119720182|ref|YP_920677.1| - 0.1 12.0 0.3 0.66 9.3 0.1 2.1 1 1 1 2 2 2 0 CASP C terminal Mce4_CUP1 PF11887.8 gi|119720182|ref|YP_920677.1| - 0.11 12.0 0.1 0.17 11.3 0.1 1.3 1 1 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative FTA4 PF13093.6 gi|119720182|ref|YP_920677.1| - 0.11 12.4 1.0 1.8 8.4 1.0 2.1 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF4455 PF14643.6 gi|119720182|ref|YP_920677.1| - 0.12 11.0 0.5 0.15 10.7 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) TRPM_tetra PF16519.5 gi|119720182|ref|YP_920677.1| - 0.12 12.4 1.3 0.79 9.9 0.7 2.2 1 1 1 2 2 2 0 Tetramerisation domain of TRPM DUF2205 PF10224.9 gi|119720182|ref|YP_920677.1| - 0.13 12.3 1.9 7.8 6.6 0.3 2.8 1 1 2 3 3 3 0 Short coiled-coil protein DUF3535 PF12054.8 gi|119720182|ref|YP_920677.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3535) Macoilin PF09726.9 gi|119720182|ref|YP_920677.1| - 0.14 10.7 0.9 0.15 10.6 0.9 1.1 1 0 0 1 1 1 0 Macoilin family U62_UL91 PF17442.2 gi|119720182|ref|YP_920677.1| - 0.16 12.0 0.7 2.4 8.2 0.2 2.8 2 1 0 2 2 2 0 Functional domain of U62 and UL91 proteins PspB PF06667.12 gi|119720182|ref|YP_920677.1| - 0.16 12.0 7.2 11 6.1 0.4 3.4 1 1 2 3 3 3 0 Phage shock protein B EMP24_GP25L PF01105.24 gi|119720182|ref|YP_920677.1| - 0.17 11.8 0.4 7.3 6.5 0.1 2.0 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD BRI3BP PF14965.6 gi|119720182|ref|YP_920677.1| - 0.18 11.3 4.8 16 4.9 3.7 3.2 1 1 0 1 1 1 0 Negative regulator of p53/TP53 DUF1690 PF07956.11 gi|119720182|ref|YP_920677.1| - 0.19 12.2 2.0 12 6.3 0.5 2.9 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) FAM76 PF16046.5 gi|119720182|ref|YP_920677.1| - 0.19 11.0 1.0 0.62 9.4 1.0 1.7 1 1 0 1 1 1 0 FAM76 protein Phage_GPO PF05929.11 gi|119720182|ref|YP_920677.1| - 0.19 11.3 0.0 0.48 10.0 0.0 1.7 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4515 PF14988.6 gi|119720182|ref|YP_920677.1| - 0.2 11.5 0.8 2.9 7.7 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4515) HalX PF08663.10 gi|119720182|ref|YP_920677.1| - 0.21 11.9 9.5 4.4 7.7 6.1 3.1 1 1 1 2 2 2 0 HalX domain GTP-bdg_M PF16360.5 gi|119720182|ref|YP_920677.1| - 0.21 12.2 7.5 0.91 10.2 1.0 3.2 1 1 2 3 3 3 0 GTP-binding GTPase Middle Region Phlebovirus_NSM PF07246.11 gi|119720182|ref|YP_920677.1| - 0.24 10.8 1.9 0.32 10.4 1.0 1.5 1 1 1 2 2 1 0 Phlebovirus nonstructural protein NS-M DUF4349 PF14257.6 gi|119720182|ref|YP_920677.1| - 0.24 10.8 6.2 9.8 5.6 2.1 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) Val_tRNA-synt_C PF10458.9 gi|119720182|ref|YP_920677.1| - 0.27 11.5 8.7 1.8 8.9 0.4 3.8 2 1 3 5 5 4 0 Valyl tRNA synthetase tRNA binding arm Glyco_H_20C_C PF18088.1 gi|119720182|ref|YP_920677.1| - 0.3 10.9 3.1 4.9 6.9 3.1 2.3 1 1 0 1 1 1 0 Glycoside Hydrolase 20C C-terminal domain Osmo_CC PF08946.10 gi|119720182|ref|YP_920677.1| - 0.37 11.1 5.5 10 6.4 1.1 3.1 1 1 2 3 3 2 0 Osmosensory transporter coiled coil Ntox28 PF15605.6 gi|119720182|ref|YP_920677.1| - 0.42 10.9 2.9 3.1 8.1 2.9 2.3 1 1 0 1 1 1 0 Bacterial toxin 28 DUF1003 PF06210.11 gi|119720182|ref|YP_920677.1| - 0.81 9.8 5.6 2.1 8.5 0.5 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1003) MutS_IV PF05190.18 gi|119720182|ref|YP_920677.1| - 0.85 10.0 3.6 3.2 8.2 0.7 2.5 1 1 2 3 3 3 0 MutS family domain IV DUF3618 PF12277.8 gi|119720182|ref|YP_920677.1| - 2.4 8.5 7.0 17 5.7 3.9 3.1 3 1 0 3 3 2 0 Protein of unknown function (DUF3618) DUF3375 PF11855.8 gi|119720182|ref|YP_920677.1| - 4.3 6.1 14.3 2.8 6.8 1.0 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF3375) YvrJ PF12841.7 gi|119720182|ref|YP_920677.1| - 4.3 6.9 8.0 17 5.0 0.4 3.7 2 1 2 4 4 3 0 YvrJ protein family Polbeta PF18765.1 gi|119720183|ref|YP_920678.1| - 9e-14 51.3 0.0 1.5e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|119720183|ref|YP_920678.1| - 2.7e-05 24.4 0.1 5.4e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF2997 PF11211.8 gi|119720183|ref|YP_920678.1| - 0.053 13.3 0.3 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2997) PLDc_2 PF13091.6 gi|119720184|ref|YP_920679.1| - 0.062 13.2 0.0 0.099 12.5 0.0 1.3 1 0 0 1 1 1 0 PLD-like domain DUF5591 PF17884.1 gi|119720185|ref|YP_920680.1| - 2.6e-14 53.4 3.2 8.3e-14 51.7 2.9 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF5591) ThrE PF06738.12 gi|119720186|ref|YP_920681.1| - 0.079 12.3 1.5 0.082 12.3 0.8 1.3 1 1 0 1 1 1 0 Putative threonine/serine exporter Ank PF00023.30 gi|119720190|ref|YP_920685.1| - 1.8e-185 594.2 27.8 3.9e-10 39.7 0.0 24.6 24 1 1 25 25 25 22 Ankyrin repeat Ank_4 PF13637.6 gi|119720190|ref|YP_920685.1| - 3.8e-181 585.4 23.3 8.8e-15 54.9 0.0 22.5 5 3 18 23 23 23 22 Ankyrin repeats (many copies) Ank_2 PF12796.7 gi|119720190|ref|YP_920685.1| - 1.5e-175 570.3 23.5 5.1e-20 71.9 0.1 13.9 1 1 14 15 15 15 15 Ankyrin repeats (3 copies) Ank_5 PF13857.6 gi|119720190|ref|YP_920685.1| - 2.9e-165 534.1 43.0 4.8e-17 61.8 0.3 18.1 8 4 9 18 18 18 18 Ankyrin repeats (many copies) Ank_3 PF13606.6 gi|119720190|ref|YP_920685.1| - 2.7e-153 479.0 27.2 2.1e-08 33.8 0.0 25.5 25 1 0 25 25 25 22 Ankyrin repeat GATase_7 PF13537.6 gi|119720190|ref|YP_920685.1| - 0.00046 20.1 0.0 52 3.8 0.0 7.4 10 0 0 10 10 10 0 Glutamine amidotransferase domain HTH_18 PF12833.7 gi|119720190|ref|YP_920685.1| - 0.02 15.2 0.6 73 3.7 0.0 5.9 6 2 2 8 8 8 0 Helix-turn-helix domain MOZART1 PF12554.8 gi|119720190|ref|YP_920685.1| - 0.079 12.7 2.5 2.2e+02 1.7 0.0 6.6 7 0 0 7 7 7 0 Mitotic-spindle organizing gamma-tubulin ring associated Shigella_OspC PF06128.11 gi|119720190|ref|YP_920685.1| - 0.1 12.3 0.0 90 2.6 0.0 4.7 7 0 0 7 7 7 0 Shigella flexneri OspC protein Amidohydro_1 PF01979.20 gi|119720190|ref|YP_920685.1| - 0.35 10.1 2.2 5.4 6.2 0.2 3.4 4 0 0 4 4 4 0 Amidohydrolase family Arm-DNA-bind_3 PF13356.6 gi|119720190|ref|YP_920685.1| - 4.5 7.7 14.8 2.4e+02 2.2 0.1 8.0 9 1 0 9 9 9 0 Arm DNA-binding domain Thermopsin PF05317.11 gi|119720191|ref|YP_920686.1| - 2.2e-69 233.8 2.5 3.9e-69 233.0 2.5 1.4 1 0 0 1 1 1 1 Thermopsin S4_2 PF13275.6 gi|119720191|ref|YP_920686.1| - 0.23 11.3 0.0 2.4 8.1 0.0 2.2 2 0 0 2 2 2 0 S4 domain Titin_Z PF09042.11 gi|119720191|ref|YP_920686.1| - 8 6.5 6.4 16 5.5 6.4 1.5 1 0 0 1 1 1 0 Titin Z RAMPs PF03787.15 gi|119720193|ref|YP_920688.1| - 9.5e-24 84.6 0.0 1.8e-23 83.7 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|119720194|ref|YP_920689.1| - 2.4e-29 102.9 0.0 3.2e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.10 gi|119720194|ref|YP_920689.1| - 0.0051 16.3 0.0 0.0063 16.0 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) RAMPs PF03787.15 gi|119720195|ref|YP_920690.1| - 5.6e-06 26.5 0.0 8.3e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily HD PF01966.22 gi|119720196|ref|YP_920691.1| - 1.2e-07 32.0 3.9 1.2e-07 32.0 3.9 2.6 3 0 0 3 3 3 1 HD domain HDOD PF08668.12 gi|119720196|ref|YP_920691.1| - 0.01 15.3 0.1 0.024 14.1 0.1 1.6 1 0 0 1 1 1 0 HDOD domain HD_6 PF18019.1 gi|119720196|ref|YP_920691.1| - 0.049 13.8 0.4 0.23 11.6 0.2 2.2 2 1 0 2 2 2 0 HD domain DUF3435 PF11917.8 gi|119720196|ref|YP_920691.1| - 0.086 11.8 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) RAMPs PF03787.15 gi|119720197|ref|YP_920692.1| - 2.7e-08 34.1 0.0 4.1e-08 33.5 0.0 1.3 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|119720198|ref|YP_920693.1| - 4.1e-05 23.7 0.2 0.004 17.2 0.2 2.2 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|119720199|ref|YP_920694.1| - 3.8e-16 59.8 0.0 6e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 RAMP superfamily DUF1450 PF07293.11 gi|119720200|ref|YP_920695.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1450) Cu-oxidase PF00394.22 gi|119720202|ref|YP_920697.1| - 0.0023 18.1 0.0 2.3 8.3 0.0 2.6 2 0 0 2 2 2 2 Multicopper oxidase DUF4177 PF13783.6 gi|119720202|ref|YP_920697.1| - 0.12 12.7 0.0 4.5 7.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4177) P_proprotein PF01483.20 gi|119720202|ref|YP_920697.1| - 0.17 11.9 0.4 0.84 9.7 0.0 2.3 3 0 0 3 3 3 0 Proprotein convertase P-domain RAG2 PF03089.14 gi|119720202|ref|YP_920697.1| - 0.19 10.6 0.0 0.82 8.6 0.0 1.8 2 0 0 2 2 2 0 Recombination activating protein 2 Glyco_hydro_20 PF00728.22 gi|119720203|ref|YP_920698.1| - 4e-19 69.2 0.0 1.3e-18 67.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain MEDS PF14417.6 gi|119720203|ref|YP_920698.1| - 0.031 14.1 0.1 1.1 9.1 0.1 2.6 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Lyase_8_C PF02884.17 gi|119720204|ref|YP_920699.1| - 0.011 16.2 0.2 38 4.8 0.0 3.9 4 1 1 5 5 5 0 Polysaccharide lyase family 8, C-terminal beta-sandwich domain T2SS-T3SS_pil_N PF13629.6 gi|119720204|ref|YP_920699.1| - 0.039 13.7 7.3 3 7.6 0.2 3.7 3 0 0 3 3 3 0 Pilus formation protein N terminal region DUF3113 PF11310.8 gi|119720204|ref|YP_920699.1| - 0.098 12.6 0.0 12 5.9 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3113) HEPN PF05168.14 gi|119720206|ref|YP_920701.1| - 5.6e-20 71.6 1.8 6.2e-20 71.5 1.8 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|119720207|ref|YP_920702.1| - 2e-11 44.0 0.0 2.4e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720207|ref|YP_920702.1| - 8e-07 29.1 0.0 1e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|119720207|ref|YP_920702.1| - 0.00039 20.6 0.0 0.00045 20.4 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|119720207|ref|YP_920702.1| - 0.078 12.8 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF3437 PF11919.8 gi|119720208|ref|YP_920703.1| - 0.088 12.7 0.2 0.092 12.7 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3437) MFS_1 PF07690.16 gi|119720209|ref|YP_920704.1| - 9.3e-26 90.6 41.8 2.7e-22 79.2 32.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|119720209|ref|YP_920704.1| - 0.00021 20.3 5.9 0.00021 20.3 5.9 2.1 2 1 0 2 2 2 1 MFS_1 like family Acetyltransf_6 PF13480.7 gi|119720209|ref|YP_920704.1| - 0.63 10.2 3.6 1 9.5 0.4 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain TPR_2 PF07719.17 gi|119720211|ref|YP_920706.1| - 0.019 15.0 6.8 0.11 12.7 0.3 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|119720211|ref|YP_920706.1| - 0.071 13.4 7.4 0.32 11.3 0.5 4.0 3 1 0 3 3 3 0 Tetratricopeptide repeat DUF4240 PF14024.6 gi|119720211|ref|YP_920706.1| - 0.14 12.4 0.2 0.75 10.0 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4240) UPF0175 PF03683.13 gi|119720213|ref|YP_920708.1| - 0.0019 17.9 0.6 0.0065 16.1 0.6 2.2 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) PaREP1 PF05942.11 gi|119720214|ref|YP_920709.1| - 1.2e-22 80.0 2.6 2e-22 79.3 2.6 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF1707 PF08044.11 gi|119720214|ref|YP_920709.1| - 0.011 15.8 0.1 0.051 13.7 0.1 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF3141 PF11339.8 gi|119720214|ref|YP_920709.1| - 0.035 12.5 0.0 0.039 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) TMP_2 PF06791.13 gi|119720214|ref|YP_920709.1| - 0.066 12.9 0.0 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 Prophage tail length tape measure protein DUF2019 PF09450.10 gi|119720214|ref|YP_920709.1| - 0.094 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2019) CRISPR_Cas6 PF10040.9 gi|119720215|ref|YP_920710.1| - 9.6e-15 55.0 0.0 1.6e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 ThiP_synth PF10120.9 gi|119720216|ref|YP_920711.1| - 7.1e-26 90.8 0.0 7.8e-26 90.7 0.0 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase ThiP_synth PF10120.9 gi|119720217|ref|YP_920712.1| - 3.7e-12 46.2 0.0 4.1e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Thiamine-phosphate synthase Transglut_core3 PF13471.6 gi|119720218|ref|YP_920713.1| - 0.024 14.5 0.2 0.027 14.4 0.2 1.1 1 0 0 1 1 1 0 Transglutaminase-like superfamily QRPTase_C PF01729.19 gi|119720219|ref|YP_920714.1| - 9.7e-14 51.5 0.0 1.1e-13 51.3 0.0 1.0 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain TMP-TENI PF02581.17 gi|119720219|ref|YP_920714.1| - 0.0016 17.8 1.1 0.046 13.1 1.1 2.0 1 1 0 1 1 1 1 Thiamine monophosphate synthase Aldolase PF01081.19 gi|119720219|ref|YP_920714.1| - 0.019 14.4 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 KDPG and KHG aldolase Ribul_P_3_epim PF00834.19 gi|119720219|ref|YP_920714.1| - 0.027 13.9 0.1 0.038 13.4 0.1 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Multi_Drug_Res PF00893.19 gi|119720219|ref|YP_920714.1| - 0.099 13.3 0.0 0.17 12.6 0.0 1.4 1 1 0 1 1 1 0 Small Multidrug Resistance protein HTH_Tnp_1 PF01527.20 gi|119720219|ref|YP_920714.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.4 1 1 0 1 1 1 0 Transposase Cas_Cmr3 PF09700.10 gi|119720220|ref|YP_920715.1| - 7e-09 35.6 0.4 0.00014 21.4 0.0 2.2 1 1 0 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) DUF3692 PF12469.8 gi|119720221|ref|YP_920716.1| - 1.3e-27 96.2 0.0 3e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein Rubrerythrin PF02915.17 gi|119720221|ref|YP_920716.1| - 0.65 10.4 2.8 0.79 10.1 1.1 1.9 2 0 0 2 2 2 0 Rubrerythrin RAMPs PF03787.15 gi|119720222|ref|YP_920717.1| - 1.8e-09 37.9 0.3 1.3e-08 35.2 0.3 2.1 1 1 0 1 1 1 1 RAMP superfamily CRISPR_Cas6 PF10040.9 gi|119720222|ref|YP_920717.1| - 0.026 15.2 0.6 0.067 13.9 0.5 1.7 1 1 0 1 1 1 0 CRISPR-associated endoribonuclease Cas6 Cas_Cas6 PF01881.16 gi|119720222|ref|YP_920717.1| - 0.1 13.2 0.1 0.18 12.3 0.1 1.4 1 0 0 1 1 1 0 CRISPR associated protein Cas6 RAMPs PF03787.15 gi|119720223|ref|YP_920718.1| - 0.039 14.0 0.1 5.4 7.0 0.0 2.3 2 0 0 2 2 2 0 RAMP superfamily Cas_Cmr5 PF09701.10 gi|119720224|ref|YP_920719.1| - 2.4e-05 24.6 0.0 3.8e-05 24.0 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.15 gi|119720225|ref|YP_920720.1| - 1.6e-16 61.0 0.0 2.3e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 RAMP superfamily Cas_Cas1 PF01867.16 gi|119720226|ref|YP_920721.1| - 2.1e-27 96.0 0.0 3.9e-27 95.1 0.0 1.4 1 1 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|119720227|ref|YP_920722.1| - 4.3e-15 55.7 0.0 5.2e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas2CT1978 PF09707.10 gi|119720227|ref|YP_920722.1| - 0.019 15.0 0.1 0.026 14.6 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas2CT1978) DUF72 PF01904.18 gi|119720227|ref|YP_920722.1| - 0.1 12.7 0.0 0.87 9.7 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF72 DEAD PF00270.29 gi|119720228|ref|YP_920723.1| - 3.5e-06 26.9 0.0 0.00014 21.7 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|119720228|ref|YP_920723.1| - 0.023 14.7 0.0 0.3 11.1 0.0 2.3 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Csc2 PF18320.1 gi|119720230|ref|YP_920725.1| - 5.9e-07 28.7 0.1 1.6e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 Csc2 Crispr DDE_Tnp_ISAZ013 PF07592.11 gi|119720230|ref|YP_920725.1| - 0.019 13.9 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Phage_holin_6_1 PF09682.10 gi|119720230|ref|YP_920725.1| - 0.033 14.6 0.8 12 6.4 0.1 2.4 2 0 0 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) PCIF1_WW PF12237.8 gi|119720231|ref|YP_920726.1| - 0.0029 17.2 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 Phosphorylated CTD interacting factor 1 WW domain YdaT_toxin PF06254.11 gi|119720231|ref|YP_920726.1| - 0.055 14.0 0.0 0.092 13.3 0.0 1.4 1 0 0 1 1 1 0 Putative bacterial toxin ydaT ABC_tran PF00005.27 gi|119720233|ref|YP_920728.1| - 5.3e-18 65.9 0.0 7.6e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720233|ref|YP_920728.1| - 7.2e-09 35.9 0.0 0.00073 19.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119720233|ref|YP_920728.1| - 0.00016 21.3 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119720233|ref|YP_920728.1| - 0.00028 21.3 0.0 0.00034 21.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119720233|ref|YP_920728.1| - 0.0025 18.1 0.0 0.003 17.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119720233|ref|YP_920728.1| - 0.0033 17.9 0.1 0.0052 17.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119720233|ref|YP_920728.1| - 0.0038 17.4 0.0 0.0054 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|119720233|ref|YP_920728.1| - 0.0081 16.4 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119720233|ref|YP_920728.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|119720233|ref|YP_920728.1| - 0.019 14.3 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|119720233|ref|YP_920728.1| - 0.02 14.5 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119720233|ref|YP_920728.1| - 0.021 15.4 0.0 0.032 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|119720233|ref|YP_920728.1| - 0.023 14.4 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|119720233|ref|YP_920728.1| - 0.024 14.4 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|119720233|ref|YP_920728.1| - 0.026 14.6 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119720233|ref|YP_920728.1| - 0.03 14.2 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|119720233|ref|YP_920728.1| - 0.032 14.6 0.0 0.062 13.7 0.0 1.5 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|119720233|ref|YP_920728.1| - 0.056 13.1 0.1 0.091 12.4 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|119720233|ref|YP_920728.1| - 0.067 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|119720233|ref|YP_920728.1| - 0.075 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|119720233|ref|YP_920728.1| - 0.09 13.2 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|119720233|ref|YP_920728.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|119720233|ref|YP_920728.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|119720233|ref|YP_920728.1| - 0.16 12.2 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.15 gi|119720233|ref|YP_920728.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|119720233|ref|YP_920728.1| - 0.25 10.5 0.0 0.48 9.6 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain zf-UBP PF02148.19 gi|119720233|ref|YP_920728.1| - 0.27 11.6 0.0 0.41 11.0 0.0 1.2 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein PhoR PF11808.8 gi|119720234|ref|YP_920729.1| - 0.37 11.2 10.4 0.076 13.4 1.4 2.2 2 0 0 2 2 2 0 Phosphate regulon sensor protein PhoR KASH PF10541.9 gi|119720234|ref|YP_920729.1| - 8.2 6.8 8.5 0.71 10.2 1.7 2.2 2 0 0 2 2 2 0 Nuclear envelope localisation domain DUF2569 PF10754.9 gi|119720236|ref|YP_920731.1| - 0.014 15.8 1.8 0.022 15.2 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) O-antigen_lig PF13425.6 gi|119720236|ref|YP_920731.1| - 0.054 12.3 0.2 0.06 12.1 0.2 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein ABC2_membrane_2 PF12679.7 gi|119720237|ref|YP_920732.1| - 2.6e-35 122.1 21.3 3.7e-35 121.6 21.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|119720237|ref|YP_920732.1| - 0.00012 22.1 10.0 0.00012 22.1 10.0 2.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|119720237|ref|YP_920732.1| - 0.00012 21.7 3.2 0.00012 21.7 3.2 2.4 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|119720237|ref|YP_920732.1| - 0.00032 19.9 14.0 0.00032 19.9 14.0 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein TRIQK PF15168.6 gi|119720237|ref|YP_920732.1| - 0.42 10.5 9.2 0.52 10.2 1.2 2.9 3 0 0 3 3 3 0 Triple QxxK/R motif-containing protein family ABC_tran PF00005.27 gi|119720238|ref|YP_920733.1| - 7.7e-29 101.0 0.0 1.3e-28 100.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720238|ref|YP_920733.1| - 4.3e-09 36.6 3.5 0.00049 20.0 1.4 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119720238|ref|YP_920733.1| - 0.00036 21.1 0.1 0.00073 20.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119720238|ref|YP_920733.1| - 0.0026 17.5 0.3 0.0069 16.1 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|119720238|ref|YP_920733.1| - 0.005 16.8 0.0 0.013 15.5 0.0 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|119720238|ref|YP_920733.1| - 0.0079 16.5 0.2 0.24 11.7 0.2 2.7 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119720238|ref|YP_920733.1| - 0.024 15.0 0.7 0.07 13.5 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|119720238|ref|YP_920733.1| - 0.03 14.5 0.0 1.8 8.7 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|119720238|ref|YP_920733.1| - 0.04 14.0 0.3 9.6 6.2 0.0 2.8 3 1 0 3 3 2 0 AAA domain SMC_N PF02463.19 gi|119720238|ref|YP_920733.1| - 0.044 13.2 0.0 0.28 10.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DLIC PF05783.11 gi|119720238|ref|YP_920733.1| - 0.057 12.3 0.0 0.11 11.2 0.0 1.4 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) CLP1_P PF16575.5 gi|119720238|ref|YP_920733.1| - 0.1 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|119720238|ref|YP_920733.1| - 0.11 12.2 0.2 8.3 6.1 0.0 2.6 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|119720238|ref|YP_920733.1| - 0.12 11.4 0.6 0.53 9.3 0.0 2.3 3 1 0 3 3 3 0 Type II/IV secretion system protein RecA PF00154.21 gi|119720238|ref|YP_920733.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|119720238|ref|YP_920733.1| - 0.14 11.8 0.1 0.78 9.4 0.1 2.1 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.6 gi|119720238|ref|YP_920733.1| - 0.16 10.6 0.4 0.31 9.6 0.4 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|119720238|ref|YP_920733.1| - 0.18 11.7 0.6 1 9.3 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NPCBM_assoc PF10633.9 gi|119720239|ref|YP_920734.1| - 1.9e-29 101.7 1.7 1.9e-09 37.7 0.1 4.6 4 0 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CarboxypepD_reg PF13620.6 gi|119720239|ref|YP_920734.1| - 1.7e-14 53.8 4.4 8.9e-11 41.9 0.0 5.4 5 1 1 6 6 6 1 Carboxypeptidase regulatory-like domain FixG_C PF11614.8 gi|119720239|ref|YP_920734.1| - 7.4e-08 32.6 0.1 0.44 10.8 0.1 4.6 4 0 0 4 4 4 2 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF11 PF01345.18 gi|119720239|ref|YP_920734.1| - 0.00028 21.1 11.2 0.39 11.1 1.5 4.5 4 1 0 4 4 4 2 Domain of unknown function DUF11 CarbopepD_reg_2 PF13715.6 gi|119720239|ref|YP_920734.1| - 0.00035 20.5 0.3 0.45 10.5 0.0 3.4 3 0 0 3 3 3 2 CarboxypepD_reg-like domain CARDB PF07705.11 gi|119720239|ref|YP_920734.1| - 0.00039 20.6 2.6 0.12 12.6 0.4 4.1 4 0 0 4 4 4 1 CARDB DUF916 PF06030.12 gi|119720239|ref|YP_920734.1| - 0.0055 16.8 0.0 19 5.3 0.0 4.7 6 1 0 6 6 6 0 Bacterial protein of unknown function (DUF916) DUF1416 PF07210.12 gi|119720239|ref|YP_920734.1| - 0.0077 16.1 0.0 0.03 14.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1416) fn3_6 PF17766.1 gi|119720239|ref|YP_920734.1| - 0.0085 16.2 0.2 0.098 12.8 0.2 2.8 3 0 0 3 3 3 1 Fibronectin type-III domain DUF4832 PF16116.5 gi|119720239|ref|YP_920734.1| - 0.01 15.7 0.1 1.9 8.3 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4832) MG2 PF01835.19 gi|119720239|ref|YP_920734.1| - 0.013 15.9 0.0 4.9 7.7 0.0 4.6 5 1 1 6 6 6 0 MG2 domain DUF4352 PF11611.8 gi|119720239|ref|YP_920734.1| - 0.11 12.8 0.2 0.61 10.4 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4352) PaREP1 PF05942.11 gi|119720240|ref|YP_920735.1| - 3.8e-07 30.0 6.6 7e-07 29.2 6.6 1.5 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|119720240|ref|YP_920735.1| - 5e-05 23.5 0.1 7.8e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) MRP-S34 PF16053.5 gi|119720240|ref|YP_920735.1| - 0.093 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S34 Telomere_reg-2 PF10193.9 gi|119720240|ref|YP_920735.1| - 0.099 13.1 0.1 0.19 12.2 0.1 1.6 1 1 0 1 1 1 0 Telomere length regulation protein NTP_transf_2 PF01909.23 gi|119720241|ref|YP_920736.1| - 3.7e-10 40.0 0.8 5.4e-10 39.4 0.8 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720241|ref|YP_920736.1| - 0.00069 19.6 0.0 0.0011 19.0 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|119720241|ref|YP_920736.1| - 0.0083 16.3 0.3 0.063 13.5 0.3 2.0 1 1 0 1 1 1 1 DNA polymerase beta palm HSBP1 PF06825.12 gi|119720242|ref|YP_920737.1| - 0.0054 16.6 0.5 6.3 6.7 0.0 2.9 2 1 0 2 2 2 2 Heat shock factor binding protein 1 Cas_DxTHG PF09455.10 gi|119720243|ref|YP_920738.1| - 1.5e-08 34.6 0.0 7.3e-07 29.1 0.0 2.4 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family PIN PF01850.21 gi|119720244|ref|YP_920739.1| - 0.069 13.7 0.1 0.12 12.9 0.1 1.4 1 1 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 gi|119720245|ref|YP_920740.1| - 1.1e-10 41.2 0.6 2.8e-10 39.9 0.2 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin RNaseH_like PF04308.12 gi|119720246|ref|YP_920741.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease H-like ELK PF03789.13 gi|119720246|ref|YP_920741.1| - 0.33 11.1 4.8 0.58 10.3 2.5 2.4 2 0 0 2 2 2 0 ELK domain Cas_APE2256 PF09651.10 gi|119720247|ref|YP_920742.1| - 2.8e-43 147.1 0.0 4.3e-43 146.5 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) SlyX PF04102.12 gi|119720248|ref|YP_920743.1| - 3.4e-14 53.2 14.7 1.6e-05 25.4 0.3 4.3 1 1 3 4 4 4 3 SlyX DUF16 PF01519.16 gi|119720248|ref|YP_920743.1| - 3.4e-10 40.4 1.8 0.0024 18.3 0.7 3.4 1 1 2 3 3 3 3 Protein of unknown function DUF16 Fib_alpha PF08702.10 gi|119720248|ref|YP_920743.1| - 5.9e-09 36.3 0.9 0.00012 22.2 0.1 2.7 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family TMF_DNA_bd PF12329.8 gi|119720248|ref|YP_920743.1| - 9.7e-09 35.1 15.3 9.1e-05 22.4 0.6 4.0 1 1 1 3 3 3 2 TATA element modulatory factor 1 DNA binding BRE1 PF08647.11 gi|119720248|ref|YP_920743.1| - 3.7e-08 33.3 11.0 2.2e-06 27.6 4.2 2.8 1 1 2 3 3 3 1 BRE1 E3 ubiquitin ligase BLOC1_2 PF10046.9 gi|119720248|ref|YP_920743.1| - 7.5e-08 32.6 6.1 0.029 14.7 0.1 3.7 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|119720248|ref|YP_920743.1| - 2e-07 30.1 6.3 3.2e-07 29.4 6.3 1.3 1 0 0 1 1 1 1 AAA domain Cast PF10174.9 gi|119720248|ref|YP_920743.1| - 9.1e-07 27.5 7.2 1.2e-06 27.1 7.2 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone ADIP PF11559.8 gi|119720248|ref|YP_920743.1| - 3.5e-06 27.2 12.9 0.0055 16.8 2.1 3.1 1 1 3 4 4 4 4 Afadin- and alpha -actinin-Binding Trimer_CC PF08954.11 gi|119720248|ref|YP_920743.1| - 1.4e-05 24.5 18.4 0.11 12.1 0.1 5.2 1 1 5 6 6 6 2 Trimerisation motif CEP209_CC5 PF16574.5 gi|119720248|ref|YP_920743.1| - 1.8e-05 24.9 8.4 0.36 11.0 1.1 3.3 1 1 2 3 3 3 2 Coiled-coil region of centrosome protein CE290 Vac_Fusion PF02346.16 gi|119720248|ref|YP_920743.1| - 3.6e-05 23.3 9.6 0.29 10.8 0.1 5.3 1 1 4 5 5 5 1 Chordopoxvirus multifunctional envelope protein A27 HOOK PF05622.12 gi|119720248|ref|YP_920743.1| - 5.4e-05 21.6 6.3 6.8e-05 21.2 6.3 1.1 1 0 0 1 1 1 1 HOOK protein FlaC_arch PF05377.11 gi|119720248|ref|YP_920743.1| - 7.5e-05 23.0 0.9 4.4 7.8 0.0 4.3 3 1 0 4 4 4 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|119720248|ref|YP_920743.1| - 0.00012 21.1 17.8 0.049 12.5 0.4 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein ALIX_LYPXL_bnd PF13949.6 gi|119720248|ref|YP_920743.1| - 0.00013 21.4 6.7 0.00021 20.7 6.7 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV UPF0242 PF06785.11 gi|119720248|ref|YP_920743.1| - 0.00013 22.1 6.5 0.0024 18.0 2.4 2.2 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus GAS PF13851.6 gi|119720248|ref|YP_920743.1| - 0.00014 21.3 8.4 0.12 11.7 2.0 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding DUF812 PF05667.11 gi|119720248|ref|YP_920743.1| - 0.00015 20.8 11.1 0.0047 15.9 8.1 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF812) DUF1664 PF07889.12 gi|119720248|ref|YP_920743.1| - 0.00027 21.0 5.5 0.12 12.4 3.3 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|119720248|ref|YP_920743.1| - 0.00028 21.0 13.2 0.062 13.5 2.0 4.3 1 1 5 6 6 6 2 Haemolysin XhlA Baculo_PEP_C PF04513.12 gi|119720248|ref|YP_920743.1| - 0.00037 20.6 0.6 0.2 11.7 0.4 2.8 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus FliJ PF02050.16 gi|119720248|ref|YP_920743.1| - 0.00059 20.1 16.9 0.074 13.3 6.5 3.8 1 1 2 3 3 3 2 Flagellar FliJ protein Herpes_U30 PF04523.13 gi|119720248|ref|YP_920743.1| - 0.00067 17.7 1.4 0.00086 17.3 1.4 1.0 1 0 0 1 1 1 1 Herpes virus tegument protein U30 ATG16 PF08614.11 gi|119720248|ref|YP_920743.1| - 0.00084 19.6 22.1 0.036 14.3 13.5 2.4 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) Atg14 PF10186.9 gi|119720248|ref|YP_920743.1| - 0.0012 18.0 11.8 0.025 13.7 0.6 2.1 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 HrpB7 PF09486.10 gi|119720248|ref|YP_920743.1| - 0.0017 18.7 38.8 0.75 10.2 14.9 3.3 1 1 0 2 2 2 1 Bacterial type III secretion protein (HrpB7) FmiP_Thoc5 PF09766.9 gi|119720248|ref|YP_920743.1| - 0.0018 17.6 3.8 0.12 11.6 2.3 2.2 1 1 1 2 2 2 1 Fms-interacting protein/Thoc5 Jnk-SapK_ap_N PF09744.9 gi|119720248|ref|YP_920743.1| - 0.0025 18.1 15.6 0.025 14.8 9.1 2.3 1 1 1 2 2 2 2 JNK_SAPK-associated protein-1 Taxilin PF09728.9 gi|119720248|ref|YP_920743.1| - 0.0041 16.4 0.7 0.0063 15.7 0.7 1.3 1 0 0 1 1 1 1 Myosin-like coiled-coil protein DUF2730 PF10805.8 gi|119720248|ref|YP_920743.1| - 0.0044 17.1 4.0 2.7 8.1 0.1 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) LXG PF04740.12 gi|119720248|ref|YP_920743.1| - 0.0047 16.7 0.5 0.62 9.7 0.1 2.9 1 1 1 3 3 3 1 LXG domain of WXG superfamily Spc24 PF08286.11 gi|119720248|ref|YP_920743.1| - 0.0059 16.8 5.5 0.55 10.5 0.0 3.2 1 1 2 3 3 3 1 Spc24 subunit of Ndc80 Gp58 PF07902.11 gi|119720248|ref|YP_920743.1| - 0.0062 14.9 0.2 0.0079 14.5 0.2 1.1 1 0 0 1 1 1 1 gp58-like protein KxDL PF10241.9 gi|119720248|ref|YP_920743.1| - 0.0063 16.8 5.7 0.015 15.5 0.8 3.0 1 1 2 3 3 3 1 Uncharacterized conserved protein TMPIT PF07851.13 gi|119720248|ref|YP_920743.1| - 0.0065 15.8 4.7 0.022 14.0 3.7 1.9 1 1 1 2 2 2 1 TMPIT-like protein DUF4618 PF15397.6 gi|119720248|ref|YP_920743.1| - 0.007 15.8 5.1 0.048 13.1 5.2 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) Lebercilin PF15619.6 gi|119720248|ref|YP_920743.1| - 0.007 16.0 14.8 0.028 14.1 14.8 1.9 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Helo_like_N PF17111.5 gi|119720248|ref|YP_920743.1| - 0.011 15.2 5.4 1.2 8.5 2.1 2.5 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins Flagellin_C PF00700.21 gi|119720248|ref|YP_920743.1| - 0.011 16.1 3.2 2.5 8.5 0.2 3.4 1 1 3 4 4 4 0 Bacterial flagellin C-terminal helical region DUF4686 PF15742.5 gi|119720248|ref|YP_920743.1| - 0.011 14.9 4.8 0.014 14.5 4.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) TolA_bind_tri PF16331.5 gi|119720248|ref|YP_920743.1| - 0.011 15.8 12.9 4.9 7.3 1.0 5.2 2 2 4 6 6 6 0 TolA binding protein trimerisation MbeD_MobD PF04899.12 gi|119720248|ref|YP_920743.1| - 0.012 15.7 4.9 0.99 9.6 0.0 3.8 1 1 2 3 3 3 0 MbeD/MobD like Wtap PF17098.5 gi|119720248|ref|YP_920743.1| - 0.013 15.5 18.2 0.26 11.2 0.5 3.8 1 1 3 4 4 4 0 WTAP/Mum2p family PTRF_SDPR PF15237.6 gi|119720248|ref|YP_920743.1| - 0.013 15.1 6.4 0.12 12.0 4.0 2.5 1 1 1 3 3 2 0 PTRF/SDPR family DUF4795 PF16043.5 gi|119720248|ref|YP_920743.1| - 0.014 15.0 5.6 1.5 8.4 4.2 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Prefoldin_2 PF01920.20 gi|119720248|ref|YP_920743.1| - 0.015 15.3 10.7 2.4 8.1 0.2 3.7 1 1 3 5 5 5 0 Prefoldin subunit Not3 PF04065.15 gi|119720248|ref|YP_920743.1| - 0.015 14.7 5.7 0.95 8.8 5.2 2.2 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component HemX PF04375.14 gi|119720248|ref|YP_920743.1| - 0.017 14.5 11.0 0.21 10.9 2.0 2.7 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Sbi-IV PF11621.8 gi|119720248|ref|YP_920743.1| - 0.019 15.3 17.2 0.69 10.3 3.3 4.5 1 1 3 4 4 4 0 C3 binding domain 4 of IgG-bind protein SBI DUF5305 PF17231.2 gi|119720248|ref|YP_920743.1| - 0.02 14.3 1.0 0.58 9.5 0.2 2.7 1 1 1 3 3 3 0 Family of unknown function (DUF5305) Mod_r PF07200.13 gi|119720248|ref|YP_920743.1| - 0.021 14.9 9.8 0.21 11.7 6.1 2.3 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein TMCO5 PF14992.6 gi|119720248|ref|YP_920743.1| - 0.024 14.2 3.4 0.039 13.5 3.4 1.3 1 0 0 1 1 1 0 TMCO5 family PKcGMP_CC PF16808.5 gi|119720248|ref|YP_920743.1| - 0.025 14.4 14.0 1 9.3 0.5 5.3 3 1 2 5 5 5 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Sulfatase_C PF14707.6 gi|119720248|ref|YP_920743.1| - 0.033 14.9 6.6 1.1 10.0 1.4 3.5 1 1 2 3 3 2 0 C-terminal region of aryl-sulfatase DUF3584 PF12128.8 gi|119720248|ref|YP_920743.1| - 0.035 11.7 17.0 0.048 11.2 17.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF5082 PF16888.5 gi|119720248|ref|YP_920743.1| - 0.038 14.3 14.3 2.4 8.5 8.9 4.2 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) CC2-LZ PF16516.5 gi|119720248|ref|YP_920743.1| - 0.038 14.3 10.7 7.3 7.0 1.0 3.6 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator NCD2 PF04905.13 gi|119720248|ref|YP_920743.1| - 0.044 13.7 6.2 0.33 10.9 4.4 2.7 1 1 1 2 2 2 0 NAB conserved region 2 (NCD2) Nsp1_C PF05064.13 gi|119720248|ref|YP_920743.1| - 0.047 13.5 2.3 1.8 8.4 0.4 2.4 1 1 1 2 2 2 0 Nsp1-like C-terminal region COG5 PF10392.9 gi|119720248|ref|YP_920743.1| - 0.047 13.9 7.2 1.4 9.1 1.8 3.2 1 1 2 3 3 3 0 Golgi transport complex subunit 5 CENP-F_leu_zip PF10473.9 gi|119720248|ref|YP_920743.1| - 0.048 13.7 13.7 0.98 9.4 7.0 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF724 PF05266.14 gi|119720248|ref|YP_920743.1| - 0.048 13.5 12.6 0.3 10.9 8.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF3130 PF11328.8 gi|119720248|ref|YP_920743.1| - 0.049 13.9 0.5 1.7 8.9 0.3 2.7 1 1 1 3 3 3 0 Protein of unknown function (DUF3130 FapA PF03961.13 gi|119720248|ref|YP_920743.1| - 0.051 12.2 5.4 0.51 8.9 5.4 2.1 1 1 0 1 1 1 0 Flagellar Assembly Protein A Exonuc_VII_S PF02609.16 gi|119720248|ref|YP_920743.1| - 0.053 13.6 19.5 3.5 7.8 1.6 5.9 1 1 5 6 6 6 0 Exonuclease VII small subunit EzrA PF06160.12 gi|119720248|ref|YP_920743.1| - 0.061 11.5 7.9 0.88 7.7 4.7 2.0 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF4407 PF14362.6 gi|119720248|ref|YP_920743.1| - 0.072 12.4 18.0 3.9 6.7 18.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Spc29 PF17082.5 gi|119720248|ref|YP_920743.1| - 0.076 12.8 3.8 0.54 10.1 0.5 2.5 1 1 1 2 2 2 0 Spindle Pole Component 29 ERM PF00769.19 gi|119720248|ref|YP_920743.1| - 0.079 12.8 28.8 0.11 12.3 16.2 2.2 1 1 1 2 2 2 0 Ezrin/radixin/moesin family ANAPC16 PF17256.2 gi|119720248|ref|YP_920743.1| - 0.08 13.3 3.6 50 4.4 0.1 4.1 2 1 2 4 4 4 0 Anaphase-promoting complex, subunit 16 DUF948 PF06103.11 gi|119720248|ref|YP_920743.1| - 0.082 13.2 1.7 43 4.5 0.8 3.3 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) FAM76 PF16046.5 gi|119720248|ref|YP_920743.1| - 0.086 12.2 5.8 1.3 8.3 0.7 2.0 1 1 1 2 2 2 0 FAM76 protein BicD PF09730.9 gi|119720248|ref|YP_920743.1| - 0.095 11.1 10.6 0.61 8.5 10.9 1.9 1 1 0 1 1 1 0 Microtubule-associated protein Bicaudal-D MAD PF05557.13 gi|119720248|ref|YP_920743.1| - 0.12 10.7 11.9 0.27 9.5 11.9 1.4 1 1 0 1 1 1 0 Mitotic checkpoint protein Leu_zip PF15294.6 gi|119720248|ref|YP_920743.1| - 0.14 11.6 9.1 0.22 11.0 5.5 2.0 1 1 1 2 2 2 0 Leucine zipper Tektin PF03148.14 gi|119720248|ref|YP_920743.1| - 0.14 10.8 14.2 3.2 6.4 2.3 3.0 1 1 0 1 1 1 0 Tektin family KASH_CCD PF14662.6 gi|119720248|ref|YP_920743.1| - 0.15 11.9 12.2 0.51 10.1 8.2 2.1 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Fez1 PF06818.15 gi|119720248|ref|YP_920743.1| - 0.16 12.4 12.8 0.86 10.0 8.0 2.1 1 1 1 2 2 2 0 Fez1 DUF5071 PF16804.5 gi|119720248|ref|YP_920743.1| - 0.16 12.3 0.3 0.97 9.7 0.0 2.2 2 0 0 2 2 1 0 Domain of unknown function (DUF5071) Filament PF00038.21 gi|119720248|ref|YP_920743.1| - 0.16 11.5 14.9 0.38 10.3 9.7 2.2 1 1 1 2 2 2 0 Intermediate filament protein DUF2674 PF10879.8 gi|119720248|ref|YP_920743.1| - 0.19 11.3 0.5 6.7 6.4 0.1 2.6 2 1 2 4 4 3 0 Protein of unknown function (DUF2674) DUF1465 PF07323.12 gi|119720248|ref|YP_920743.1| - 0.2 11.5 13.7 0.57 10.0 3.3 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1465) DHR10 PF18595.1 gi|119720248|ref|YP_920743.1| - 0.21 11.6 26.7 0.19 11.8 8.9 2.9 1 1 2 3 3 3 0 Designed helical repeat protein 10 domain DUF3450 PF11932.8 gi|119720248|ref|YP_920743.1| - 0.22 10.8 16.3 0.59 9.4 2.2 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) DUF3782 PF12644.7 gi|119720248|ref|YP_920743.1| - 0.23 11.7 12.2 2.6e+02 1.9 0.1 4.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3782) Sec8_exocyst PF04048.14 gi|119720248|ref|YP_920743.1| - 0.24 11.3 2.1 1.8 8.4 0.8 2.4 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Cob_adeno_trans PF01923.18 gi|119720248|ref|YP_920743.1| - 0.28 11.3 9.7 0.39 10.8 7.7 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Phage_GPO PF05929.11 gi|119720248|ref|YP_920743.1| - 0.28 10.8 11.6 1.8 8.1 8.6 2.5 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Bacillus_HBL PF05791.11 gi|119720248|ref|YP_920743.1| - 0.29 10.9 0.5 4.6 7.0 0.8 2.1 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF2130 PF09903.9 gi|119720248|ref|YP_920743.1| - 0.3 10.3 3.6 0.66 9.2 3.0 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Paralemmin PF03285.15 gi|119720248|ref|YP_920743.1| - 0.3 10.6 9.0 0.44 10.1 5.4 2.3 1 1 1 2 2 2 0 Paralemmin MIP-T3_C PF17749.1 gi|119720248|ref|YP_920743.1| - 0.3 11.0 3.6 8.9 6.3 1.1 2.9 1 1 2 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region Csm1_N PF18504.1 gi|119720248|ref|YP_920743.1| - 0.31 11.4 13.8 15 6.0 1.2 4.3 1 1 2 4 4 4 0 Csm1 N-terminal domain TACC_C PF05010.14 gi|119720248|ref|YP_920743.1| - 0.37 10.6 8.4 0.78 9.5 5.4 2.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Med9 PF07544.13 gi|119720248|ref|YP_920743.1| - 0.39 10.8 6.2 13 5.9 0.3 3.4 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Fusion_gly PF00523.18 gi|119720248|ref|YP_920743.1| - 0.39 8.9 8.7 0.2 9.9 0.1 2.5 1 1 1 2 2 2 0 Fusion glycoprotein F0 DUF3818 PF12825.7 gi|119720248|ref|YP_920743.1| - 0.4 9.7 2.5 0.67 8.9 1.4 1.8 1 1 1 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) PspA_IM30 PF04012.12 gi|119720248|ref|YP_920743.1| - 0.42 10.1 33.3 10 5.6 24.4 2.6 1 1 1 2 2 2 0 PspA/IM30 family DUF1484 PF07363.11 gi|119720248|ref|YP_920743.1| - 0.46 11.5 22.6 3.4 8.7 4.4 4.1 1 1 4 5 5 5 0 Protein of unknown function (DUF1484) Dynactin_p22 PF07426.11 gi|119720248|ref|YP_920743.1| - 0.57 10.0 5.5 12 5.7 1.6 3.0 1 1 0 2 2 2 0 Dynactin subunit p22 DUF1043 PF06295.12 gi|119720248|ref|YP_920743.1| - 0.58 10.2 2.5 6.6 6.8 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF2570 PF10828.8 gi|119720248|ref|YP_920743.1| - 0.6 9.9 5.3 4 7.3 1.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) LidA_Long_CC PF18641.1 gi|119720248|ref|YP_920743.1| - 0.61 10.1 11.4 1.4 9.0 1.2 3.1 2 1 1 3 3 3 0 LidA long coiled-coil domain LMBR1 PF04791.16 gi|119720248|ref|YP_920743.1| - 0.61 8.9 5.2 0.94 8.3 5.2 1.3 1 1 0 1 1 1 0 LMBR1-like membrane protein ABC_tran_Xtn PF12848.7 gi|119720248|ref|YP_920743.1| - 0.75 9.9 17.1 7 6.8 1.5 4.0 1 1 3 4 4 4 0 ABC transporter DUF4200 PF13863.6 gi|119720248|ref|YP_920743.1| - 0.75 10.2 15.1 0.73 10.2 9.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) TMP_2 PF06791.13 gi|119720248|ref|YP_920743.1| - 0.78 9.4 12.9 3.1 7.4 12.9 1.8 1 1 0 1 1 1 0 Prophage tail length tape measure protein Phage_tail_NK PF16532.5 gi|119720248|ref|YP_920743.1| - 0.81 9.3 2.8 21 4.7 0.0 2.7 1 1 1 3 3 2 0 Sf6-type phage tail needle knob or tip of some Caudovirales TPR_MLP1_2 PF07926.12 gi|119720248|ref|YP_920743.1| - 0.84 9.7 25.3 2 8.5 16.9 2.5 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein PHM7_cyt PF14703.6 gi|119720248|ref|YP_920743.1| - 0.86 9.8 6.1 4.4 7.5 1.5 2.9 1 1 1 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter Herpes_UL17 PF04559.12 gi|119720248|ref|YP_920743.1| - 0.91 8.2 6.7 1.4 7.6 6.7 1.3 1 0 0 1 1 1 0 Herpesvirus UL17 protein FemAB PF02388.16 gi|119720248|ref|YP_920743.1| - 1 8.2 5.9 1.2 8.0 5.2 1.4 1 1 0 1 1 1 0 FemAB family ABC_tran_CTD PF16326.5 gi|119720248|ref|YP_920743.1| - 1 9.7 25.2 1.8e+04 -9.9 25.2 4.0 1 1 0 1 1 0 0 ABC transporter C-terminal domain EF-hand_11 PF08976.11 gi|119720248|ref|YP_920743.1| - 1 10.2 5.9 54 4.7 0.1 3.7 1 1 4 5 5 4 0 EF-hand domain DUF641 PF04859.12 gi|119720248|ref|YP_920743.1| - 1.1 9.6 11.4 3.9 7.8 1.4 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) zf-C4H2 PF10146.9 gi|119720248|ref|YP_920743.1| - 1.2 9.4 8.4 0.66 10.2 4.2 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein Rootletin PF15035.6 gi|119720248|ref|YP_920743.1| - 1.3 9.0 10.6 1.5 8.8 3.4 2.5 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Troponin PF00992.20 gi|119720248|ref|YP_920743.1| - 1.4 9.2 18.2 3.6 7.9 10.2 3.1 1 1 2 3 3 3 0 Troponin CLZ PF16526.5 gi|119720248|ref|YP_920743.1| - 1.5 9.3 13.5 25 5.3 2.1 4.3 1 1 3 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CDH1_2_SANT_HL1 PF18375.1 gi|119720248|ref|YP_920743.1| - 1.6 9.5 7.8 0.98 10.1 1.6 2.8 1 1 1 3 3 2 0 CDH1/2 SANT-Helical linker 1 HAUS-augmin3 PF14932.6 gi|119720248|ref|YP_920743.1| - 1.9 8.0 13.4 4.2 6.9 9.7 2.5 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Vps53_N PF04100.12 gi|119720248|ref|YP_920743.1| - 2 7.3 6.7 9.2 5.1 3.6 2.2 1 1 1 2 2 2 0 Vps53-like, N-terminal BTAD PF03704.17 gi|119720248|ref|YP_920743.1| - 2.1 8.8 29.3 0.27 11.7 11.3 3.8 1 1 2 3 3 3 0 Bacterial transcriptional activator domain CENP-Q PF13094.6 gi|119720248|ref|YP_920743.1| - 2.2 8.4 29.7 13 6.0 3.6 3.5 1 1 2 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit TMF_TATA_bd PF12325.8 gi|119720248|ref|YP_920743.1| - 2.6 8.3 20.0 5.1 7.3 1.3 3.3 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding FUSC PF04632.12 gi|119720248|ref|YP_920743.1| - 2.9 6.3 22.8 5.3 5.4 22.8 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family BST2 PF16716.5 gi|119720248|ref|YP_920743.1| - 3.2 8.4 8.1 10 6.8 1.1 2.7 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 UBN_AB PF14075.6 gi|119720248|ref|YP_920743.1| - 3.3 7.4 5.1 42 3.8 5.1 2.5 1 1 0 1 1 1 0 Ubinuclein conserved middle domain T3SSipB PF16535.5 gi|119720248|ref|YP_920743.1| - 3.5 8.1 14.9 15 6.1 5.0 2.3 1 1 1 2 2 2 0 Type III cell invasion protein SipB DUF5632 PF18646.1 gi|119720248|ref|YP_920743.1| - 3.7 7.7 9.5 7.3 6.7 0.2 4.2 3 1 0 4 4 3 0 Family of unknown function (DUF5632) APG6_N PF17675.1 gi|119720248|ref|YP_920743.1| - 3.7 8.1 24.7 11 6.5 3.1 3.0 1 1 2 3 3 3 0 Apg6 coiled-coil region YabA PF06156.13 gi|119720248|ref|YP_920743.1| - 3.9 8.2 4.9 96 3.7 1.5 3.3 1 1 3 4 4 4 0 Initiation control protein YabA MutS_III PF05192.18 gi|119720248|ref|YP_920743.1| - 5.1 7.3 6.5 10 6.3 6.5 1.5 1 0 0 1 1 1 0 MutS domain III Prefoldin PF02996.17 gi|119720248|ref|YP_920743.1| - 5.2 7.0 12.1 1.7e+02 2.1 9.7 3.6 1 1 1 2 2 2 0 Prefoldin subunit CREPT PF16566.5 gi|119720248|ref|YP_920743.1| - 5.2 7.2 10.0 7.3 6.7 6.7 2.2 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour FlgN PF05130.12 gi|119720248|ref|YP_920743.1| - 5.2 7.6 18.5 7.4 7.1 0.7 2.4 1 1 2 3 3 3 0 FlgN protein ZapB PF06005.12 gi|119720248|ref|YP_920743.1| - 5.3 7.6 17.8 32 5.1 1.1 3.5 1 1 2 3 3 3 0 Cell division protein ZapB DUF2218 PF09981.9 gi|119720248|ref|YP_920743.1| - 5.9 7.4 20.7 5.9 7.3 4.4 4.6 1 1 4 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2218) CAP_N PF01213.19 gi|119720248|ref|YP_920743.1| - 6.5 6.1 11.1 28 4.1 11.1 2.1 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal TPR_12 PF13424.6 gi|119720248|ref|YP_920743.1| - 6.6 7.1 23.6 3.2 8.1 0.5 4.2 1 1 2 3 3 3 0 Tetratricopeptide repeat P4Ha_N PF08336.11 gi|119720248|ref|YP_920743.1| - 6.7 6.7 7.0 10 6.2 0.6 3.3 1 1 2 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region HAUS6_N PF14661.6 gi|119720248|ref|YP_920743.1| - 7.5 6.1 11.0 6 6.4 0.4 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus YkyA PF10368.9 gi|119720248|ref|YP_920743.1| - 7.9 6.1 10.2 7.3 6.2 8.1 1.9 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Tropomyosin PF00261.20 gi|119720248|ref|YP_920743.1| - 8.4 5.7 26.6 15 4.8 20.2 2.2 1 1 0 1 1 1 0 Tropomyosin ATPase_2 PF01637.18 gi|119720249|ref|YP_920744.1| - 9.2e-50 169.7 0.1 1.2e-49 169.4 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|119720249|ref|YP_920744.1| - 1.4e-07 32.0 0.0 2.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119720249|ref|YP_920744.1| - 2e-05 24.9 0.0 4.3e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|119720249|ref|YP_920744.1| - 0.0016 18.8 0.0 0.0028 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|119720249|ref|YP_920744.1| - 0.003 17.9 0.0 0.0055 17.1 0.0 1.4 1 0 0 1 1 1 1 RNA helicase KAP_NTPase PF07693.14 gi|119720249|ref|YP_920744.1| - 0.007 15.6 0.0 0.013 14.8 0.0 1.3 1 1 0 1 1 1 1 KAP family P-loop domain AAA PF00004.29 gi|119720249|ref|YP_920744.1| - 0.0094 16.4 0.0 0.021 15.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|119720249|ref|YP_920744.1| - 0.015 14.5 0.0 0.032 13.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|119720249|ref|YP_920744.1| - 0.02 14.9 0.0 0.12 12.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|119720249|ref|YP_920744.1| - 0.028 13.8 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial TniB protein AAA_24 PF13479.6 gi|119720249|ref|YP_920744.1| - 0.03 14.0 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|119720249|ref|YP_920744.1| - 0.077 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_28 PF13521.6 gi|119720249|ref|YP_920744.1| - 0.091 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain PBECR2 PF18810.1 gi|119720249|ref|YP_920744.1| - 0.13 12.6 0.1 0.32 11.3 0.1 1.6 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 RNA12 PF10443.9 gi|119720249|ref|YP_920744.1| - 0.14 10.9 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_7 PF12775.7 gi|119720249|ref|YP_920744.1| - 0.17 11.4 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region RHH_1 PF01402.21 gi|119720251|ref|YP_920746.1| - 0.0018 18.1 10.0 0.0048 16.8 4.8 2.9 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family BAT PF15915.5 gi|119720251|ref|YP_920746.1| - 0.004 17.1 1.6 0.01 15.7 1.6 1.7 1 1 0 1 1 1 1 GAF and HTH_10 associated domain RHH_3 PF12651.7 gi|119720251|ref|YP_920746.1| - 0.012 15.6 0.9 0.23 11.5 0.1 2.7 2 1 0 2 2 2 0 Ribbon-helix-helix domain Band_7 PF01145.25 gi|119720251|ref|YP_920746.1| - 0.026 14.6 0.1 0.033 14.2 0.1 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family RHH_6 PF16762.5 gi|119720251|ref|YP_920746.1| - 0.045 14.4 0.2 0.09 13.4 0.2 1.6 1 1 0 1 1 1 0 Ribbon-helix-helix domain RHH_5 PF07878.11 gi|119720251|ref|YP_920746.1| - 0.08 12.8 1.6 9.4 6.2 0.1 2.6 3 1 1 4 4 4 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DUF917 PF06032.12 gi|119720252|ref|YP_920747.1| - 1.5e-99 333.2 1.0 1.7e-99 333.0 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) LeuA_dimer PF08502.10 gi|119720252|ref|YP_920747.1| - 0.095 12.6 0.1 0.54 10.2 0.1 2.1 2 0 0 2 2 2 0 LeuA allosteric (dimerisation) domain DUF4177 PF13783.6 gi|119720253|ref|YP_920748.1| - 0.0031 17.8 0.0 0.068 13.5 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4177) AP_endonuc_2 PF01261.24 gi|119720254|ref|YP_920749.1| - 3.6e-30 105.0 0.5 4.6e-30 104.6 0.5 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|119720254|ref|YP_920749.1| - 0.0014 18.3 0.0 0.0031 17.2 0.0 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus ComA PF02679.15 gi|119720254|ref|YP_920749.1| - 0.13 11.7 0.0 0.36 10.2 0.0 1.6 1 1 1 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Peptidase_M20 PF01546.28 gi|119720255|ref|YP_920750.1| - 1.6e-08 34.5 0.0 2.4e-08 33.9 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|119720255|ref|YP_920750.1| - 2.7e-07 30.5 0.0 8e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain CPBP PF02517.16 gi|119720256|ref|YP_920751.1| - 1.3e-05 25.4 15.2 1.3e-05 25.4 15.2 2.9 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DEAD PF00270.29 gi|119720257|ref|YP_920752.1| - 2.4e-29 102.3 0.0 2e-28 99.3 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119720257|ref|YP_920752.1| - 2.6e-15 56.7 0.0 7.2e-15 55.3 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119720257|ref|YP_920752.1| - 2.6e-08 34.1 0.0 4.8e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|119720257|ref|YP_920752.1| - 0.0041 17.4 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720257|ref|YP_920752.1| - 0.012 16.0 0.1 0.033 14.6 0.1 1.8 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|119720257|ref|YP_920752.1| - 0.014 15.7 0.0 0.033 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain HD PF01966.22 gi|119720258|ref|YP_920753.1| - 5.6e-06 26.6 0.8 8.9e-06 25.9 0.8 1.4 1 0 0 1 1 1 1 HD domain DEAD PF00270.29 gi|119720259|ref|YP_920754.1| - 4.4e-11 42.9 0.0 8.2e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119720259|ref|YP_920754.1| - 3.4e-07 30.6 0.0 5.5e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Get5_C PF18514.1 gi|119720259|ref|YP_920754.1| - 0.0048 16.6 0.1 0.018 14.7 0.1 2.0 1 0 0 1 1 1 1 Get5 C-terminal domain ResIII PF04851.15 gi|119720259|ref|YP_920754.1| - 0.0095 16.0 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|119720259|ref|YP_920754.1| - 0.058 13.8 0.3 0.26 11.6 0.3 2.3 1 1 0 1 1 1 0 AAA ATPase domain SNF2_N PF00176.23 gi|119720259|ref|YP_920754.1| - 0.1 11.3 0.0 0.18 10.5 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain Cas_Csa4 PF09703.10 gi|119720260|ref|YP_920755.1| - 4.4e-109 365.0 0.0 5.3e-109 364.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) DevR PF01905.16 gi|119720261|ref|YP_920756.1| - 6e-76 255.1 0.0 7.2e-76 254.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csa5 PF09702.10 gi|119720262|ref|YP_920757.1| - 0.06 13.6 0.1 0.17 12.1 0.1 1.8 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Csa5) HTH_IclR PF09339.10 gi|119720263|ref|YP_920758.1| - 4.3e-08 32.8 0.0 9.4e-07 28.5 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|119720263|ref|YP_920758.1| - 5.2e-08 32.7 0.0 2.1e-07 30.7 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|119720263|ref|YP_920758.1| - 5.6e-07 29.3 0.0 9.8e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|119720263|ref|YP_920758.1| - 1.1e-06 28.4 0.0 2.3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|119720263|ref|YP_920758.1| - 1e-05 25.3 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119720263|ref|YP_920758.1| - 1.5e-05 24.5 0.0 2.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|119720263|ref|YP_920758.1| - 0.00023 21.1 0.0 0.00057 19.8 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|119720263|ref|YP_920758.1| - 0.00074 19.5 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|119720263|ref|YP_920758.1| - 0.0016 18.4 0.1 0.0072 16.3 0.1 2.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_45 PF14947.6 gi|119720263|ref|YP_920758.1| - 0.0078 16.2 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.16 gi|119720263|ref|YP_920758.1| - 0.014 15.4 0.1 0.033 14.2 0.1 1.7 1 0 0 1 1 1 0 HemN C-terminal domain Fe_dep_repress PF01325.19 gi|119720263|ref|YP_920758.1| - 0.025 14.8 0.0 0.074 13.3 0.0 1.9 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|119720263|ref|YP_920758.1| - 0.047 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain DUF2250 PF10007.9 gi|119720263|ref|YP_920758.1| - 0.075 13.2 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_38 PF13936.6 gi|119720263|ref|YP_920758.1| - 0.097 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PDDEXK_10 PF07788.11 gi|119720264|ref|YP_920759.1| - 2.4e-26 91.5 1.0 4e-26 90.7 1.0 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|119720264|ref|YP_920759.1| - 4.6e-26 90.8 12.5 9.2e-25 86.6 12.5 2.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) CALCOCO1 PF07888.11 gi|119720264|ref|YP_920759.1| - 0.021 13.7 5.5 0.029 13.2 5.5 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Peptidase_S24 PF00717.23 gi|119720264|ref|YP_920759.1| - 0.043 13.8 0.2 0.087 12.8 0.2 1.6 1 0 0 1 1 1 0 Peptidase S24-like DHR10 PF18595.1 gi|119720264|ref|YP_920759.1| - 0.088 12.9 3.4 0.14 12.2 3.4 1.3 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DUF4200 PF13863.6 gi|119720264|ref|YP_920759.1| - 0.21 12.0 6.5 0.33 11.4 6.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Exonuc_VII_L PF02601.15 gi|119720264|ref|YP_920759.1| - 0.25 10.9 0.2 0.32 10.5 0.2 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Jnk-SapK_ap_N PF09744.9 gi|119720264|ref|YP_920759.1| - 0.99 9.6 6.5 1.8 8.8 6.5 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ARGLU PF15346.6 gi|119720264|ref|YP_920759.1| - 1.2 9.0 14.7 3.5 7.5 14.7 1.8 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 Dynein_attach_N PF15867.5 gi|119720264|ref|YP_920759.1| - 3.3 7.7 10.4 1.6 8.7 0.9 3.7 4 0 0 4 4 4 0 Dynein attachment factor N-terminus CRISPR_Cas6 PF10040.9 gi|119720265|ref|YP_920760.1| - 1.7e-12 47.8 0.2 4.2e-12 46.5 0.2 1.7 1 1 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|119720265|ref|YP_920760.1| - 0.018 15.4 0.0 0.045 14.0 0.0 1.7 1 1 0 1 1 1 0 Cas6 N-terminal domain Cas_Cas6 PF01881.16 gi|119720265|ref|YP_920760.1| - 0.041 14.4 0.1 0.097 13.2 0.1 1.6 2 0 0 2 2 2 0 CRISPR associated protein Cas6 Csm1_B PF18211.1 gi|119720266|ref|YP_920761.1| - 8.4e-06 25.5 0.0 2.1e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Csm1 subunit domain B RAMPs PF03787.15 gi|119720267|ref|YP_920762.1| - 0.021 14.9 0.2 0.055 13.5 0.2 1.7 1 1 0 1 1 1 0 RAMP superfamily RAMPs PF03787.15 gi|119720269|ref|YP_920764.1| - 4.6e-06 26.8 0.2 2.9e-05 24.2 0.2 2.1 1 1 0 1 1 1 1 RAMP superfamily FliX PF10768.9 gi|119720270|ref|YP_920765.1| - 0.0097 16.4 1.0 0.078 13.5 0.0 2.4 3 0 0 3 3 3 1 Class II flagellar assembly regulator AAA_21 PF13304.6 gi|119720271|ref|YP_920766.1| - 2.9e-06 27.3 0.0 3.6e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|119720271|ref|YP_920766.1| - 0.01 15.6 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain LDcluster4 PF18306.1 gi|119720274|ref|YP_920769.1| - 6.6e-19 68.0 0.0 7.7e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family LSDAT_prok PF18171.1 gi|119720274|ref|YP_920769.1| - 0.04 13.2 0.0 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 SLOG in TRPM, prokaryote Lysine_decarbox PF03641.14 gi|119720274|ref|YP_920769.1| - 0.22 11.6 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 Possible lysine decarboxylase PaREP1 PF05942.11 gi|119720275|ref|YP_920770.1| - 1.7e-37 127.8 2.0 1.7e-37 127.8 2.0 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|119720275|ref|YP_920770.1| - 0.039 14.0 0.1 0.093 12.8 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF357) Fer4_8 PF13183.6 gi|119720276|ref|YP_920771.1| - 5.7e-05 23.5 5.5 0.00016 22.0 5.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119720276|ref|YP_920771.1| - 0.0017 18.9 7.2 0.0022 18.5 4.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119720276|ref|YP_920771.1| - 0.0019 18.7 6.4 0.005 17.3 6.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119720276|ref|YP_920771.1| - 0.011 15.9 4.7 0.027 14.6 4.7 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119720276|ref|YP_920771.1| - 0.032 14.3 6.8 0.047 13.8 4.8 2.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119720276|ref|YP_920771.1| - 0.47 10.6 11.7 3 8.1 2.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119720276|ref|YP_920771.1| - 0.81 9.8 13.1 0.96 9.6 1.9 2.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119720276|ref|YP_920771.1| - 2.5 9.1 8.0 6.8 7.7 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain FAD_binding_4 PF01565.23 gi|119720277|ref|YP_920772.1| - 1.5e-36 125.2 0.1 2.6e-36 124.4 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|119720277|ref|YP_920772.1| - 1.9e-35 122.7 0.1 2.7e-35 122.2 0.1 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Glyco_trans_1_2 PF13524.6 gi|119720277|ref|YP_920772.1| - 0.2 12.1 1.4 1 9.8 0.4 2.5 3 0 0 3 3 3 0 Glycosyl transferases group 1 FGGY_C PF02782.16 gi|119720278|ref|YP_920773.1| - 2.4e-27 96.0 0.0 5.8e-27 94.7 0.0 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.21 gi|119720278|ref|YP_920773.1| - 5.2e-24 85.2 0.0 7.5e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Pyr_redox_2 PF07992.14 gi|119720279|ref|YP_920774.1| - 5.6e-07 29.1 0.1 2e-06 27.3 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|119720279|ref|YP_920774.1| - 2.4e-05 24.5 1.4 9.6e-05 22.5 0.2 2.7 3 2 1 4 4 4 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|119720279|ref|YP_920774.1| - 0.026 14.5 0.9 12 5.8 0.1 3.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding DAO PF01266.24 gi|119720279|ref|YP_920774.1| - 0.083 12.5 1.9 8.9 5.8 0.1 3.1 3 0 0 3 3 3 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|119720279|ref|YP_920774.1| - 0.12 13.0 0.7 1.9 9.1 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119720280|ref|YP_920775.1| - 2.1e-47 162.4 0.6 2.8e-47 162.0 0.2 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|119720280|ref|YP_920775.1| - 2.3e-11 43.8 6.3 4.1e-11 43.1 6.3 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|119720280|ref|YP_920775.1| - 1.7e-10 40.6 0.1 0.00024 20.4 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|119720280|ref|YP_920775.1| - 4.3e-08 33.3 0.0 1.2e-07 31.9 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|119720280|ref|YP_920775.1| - 1.8e-05 25.2 0.3 0.002 18.6 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|119720280|ref|YP_920775.1| - 5e-05 22.2 0.0 0.00046 19.0 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|119720280|ref|YP_920775.1| - 8.6e-05 21.9 0.2 0.00027 20.3 0.2 1.9 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|119720280|ref|YP_920775.1| - 0.00013 21.3 0.8 0.00017 20.9 0.1 1.6 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.14 gi|119720280|ref|YP_920775.1| - 0.00018 20.5 0.5 0.0072 15.2 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|119720280|ref|YP_920775.1| - 0.00028 20.1 0.1 0.00056 19.1 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|119720280|ref|YP_920775.1| - 0.0006 19.0 0.0 0.0017 17.5 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|119720280|ref|YP_920775.1| - 0.0052 16.4 0.0 0.0082 15.7 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 gi|119720280|ref|YP_920775.1| - 0.0085 16.1 0.2 0.26 11.3 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding SO_alpha_A3 PF17806.1 gi|119720280|ref|YP_920775.1| - 0.012 16.0 0.0 0.024 15.0 0.0 1.4 1 0 0 1 1 1 0 Sarcosine oxidase A3 domain FAD_oxidored PF12831.7 gi|119720280|ref|YP_920775.1| - 0.027 13.8 0.1 0.05 12.9 0.1 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|119720280|ref|YP_920775.1| - 0.034 13.4 0.0 7 5.8 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|119720280|ref|YP_920775.1| - 0.069 13.4 0.1 0.17 12.1 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.16 gi|119720280|ref|YP_920775.1| - 0.088 12.4 0.1 0.28 10.8 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|119720280|ref|YP_920775.1| - 0.095 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|119720280|ref|YP_920775.1| - 0.14 12.6 0.1 0.29 11.6 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding MoCF_biosynth PF00994.24 gi|119720281|ref|YP_920776.1| - 4.1e-39 133.5 0.0 5.4e-39 133.1 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain zf-ribbon_3 PF13248.6 gi|119720282|ref|YP_920777.1| - 0.002 17.5 5.0 0.047 13.1 5.4 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zf-ACC PF17848.1 gi|119720282|ref|YP_920777.1| - 0.0023 18.0 2.0 0.13 12.4 0.1 2.4 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|119720282|ref|YP_920777.1| - 0.0041 17.0 0.1 0.0079 16.1 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119720282|ref|YP_920777.1| - 0.0049 16.5 2.1 0.0098 15.5 2.1 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DUF4131 PF13567.6 gi|119720282|ref|YP_920777.1| - 0.0095 15.6 0.4 0.018 14.7 0.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DZR PF12773.7 gi|119720282|ref|YP_920777.1| - 0.011 15.8 1.1 0.019 15.0 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1700 PF08006.11 gi|119720282|ref|YP_920777.1| - 0.011 15.2 2.6 0.017 14.7 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) PriA_CRR PF18319.1 gi|119720282|ref|YP_920777.1| - 0.031 14.2 0.1 0.053 13.5 0.1 1.4 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Peptidase_A22B PF04258.13 gi|119720282|ref|YP_920777.1| - 0.034 13.7 0.9 0.047 13.2 0.9 1.1 1 0 0 1 1 1 0 Signal peptide peptidase Wzy_C PF04932.15 gi|119720282|ref|YP_920777.1| - 0.036 13.7 0.1 0.037 13.6 0.1 1.2 1 0 0 1 1 1 0 O-Antigen ligase zinc_ribbon_2 PF13240.6 gi|119720282|ref|YP_920777.1| - 0.057 13.2 4.7 1.9 8.3 4.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|119720282|ref|YP_920777.1| - 0.067 13.1 2.4 2.1 8.3 2.5 2.3 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119720282|ref|YP_920777.1| - 0.072 12.6 1.5 0.14 11.7 1.5 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|119720282|ref|YP_920777.1| - 0.14 12.6 0.2 0.23 11.9 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar ABC_membrane PF00664.23 gi|119720282|ref|YP_920777.1| - 0.18 11.5 3.6 0.25 10.9 3.6 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region DNA_ligase_ZBD PF03119.16 gi|119720282|ref|YP_920777.1| - 0.23 11.5 2.5 0.58 10.2 2.5 1.8 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Ac76 PF05814.11 gi|119720282|ref|YP_920777.1| - 1.8 8.6 6.4 3.6 7.7 6.4 1.5 1 0 0 1 1 1 0 Orf76 (Ac76) PIN PF01850.21 gi|119720283|ref|YP_920778.1| - 0.00011 22.7 0.5 0.00015 22.2 0.5 1.3 1 0 0 1 1 1 1 PIN domain GntR PF00392.21 gi|119720284|ref|YP_920779.1| - 0.0043 16.7 0.5 0.022 14.4 0.2 2.1 1 1 1 2 2 2 2 Bacterial regulatory proteins, gntR family LEM PF03020.15 gi|119720284|ref|YP_920779.1| - 0.0097 15.5 0.7 0.014 14.9 0.0 1.6 2 0 0 2 2 2 1 LEM domain tRNA_NucTran2_2 PF13735.6 gi|119720284|ref|YP_920779.1| - 0.073 13.1 0.0 0.097 12.7 0.0 1.3 1 1 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative RE_AccI PF09545.10 gi|119720285|ref|YP_920780.1| - 0.1 11.6 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 AccI restriction endonuclease ATPase_2 PF01637.18 gi|119720286|ref|YP_920781.1| - 1.4e-53 182.2 0.0 1.8e-53 181.9 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|119720286|ref|YP_920781.1| - 6.9e-06 26.5 1.7 1.8e-05 25.2 0.3 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|119720286|ref|YP_920781.1| - 3.8e-05 24.1 0.0 6.5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119720286|ref|YP_920781.1| - 8.4e-05 22.9 0.0 0.00016 21.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119720286|ref|YP_920781.1| - 0.00063 19.5 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|119720286|ref|YP_920781.1| - 0.0007 19.6 0.0 0.0021 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|119720286|ref|YP_920781.1| - 0.00075 18.7 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.12 gi|119720286|ref|YP_920781.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|119720286|ref|YP_920781.1| - 0.016 14.7 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|119720286|ref|YP_920781.1| - 0.017 15.2 0.0 0.033 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|119720286|ref|YP_920781.1| - 0.02 14.8 0.1 0.059 13.3 0.0 1.9 2 1 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|119720286|ref|YP_920781.1| - 0.051 13.3 0.0 0.076 12.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|119720286|ref|YP_920781.1| - 0.054 13.7 0.0 0.16 12.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119720286|ref|YP_920781.1| - 0.071 13.5 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 gi|119720286|ref|YP_920781.1| - 0.082 12.6 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|119720286|ref|YP_920781.1| - 0.082 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 NTPase Bac_DnaA PF00308.18 gi|119720286|ref|YP_920781.1| - 0.094 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_24 PF13479.6 gi|119720286|ref|YP_920781.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119720286|ref|YP_920781.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Spermine_synth PF01564.17 gi|119720287|ref|YP_920782.1| - 4e-48 163.3 0.0 5.1e-48 163.0 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_11 PF08241.12 gi|119720287|ref|YP_920782.1| - 1.6e-09 38.2 0.0 3.5e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119720287|ref|YP_920782.1| - 2.3e-09 37.9 0.0 4.6e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synt_N PF17284.2 gi|119720287|ref|YP_920782.1| - 1.2e-06 28.3 0.0 2.5e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_12 PF08242.12 gi|119720287|ref|YP_920782.1| - 5.6e-06 27.0 0.0 1.1e-05 26.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119720287|ref|YP_920782.1| - 0.00017 21.4 0.0 0.00058 19.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|119720287|ref|YP_920782.1| - 0.04 13.2 0.1 0.057 12.7 0.1 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_24 PF13578.6 gi|119720287|ref|YP_920782.1| - 0.055 14.5 0.0 0.15 13.1 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain MTS PF05175.14 gi|119720287|ref|YP_920782.1| - 0.057 13.0 0.0 0.085 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF43 PF01861.16 gi|119720287|ref|YP_920782.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Methyltransf_30 PF05430.11 gi|119720287|ref|YP_920782.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PgaD PF13994.6 gi|119720288|ref|YP_920783.1| - 0.0063 16.6 0.0 0.0063 16.6 0.0 1.4 2 0 0 2 2 1 1 PgaD-like protein DUF4131 PF13567.6 gi|119720288|ref|YP_920783.1| - 0.01 15.5 0.1 0.01 15.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Peptidase_S49_N PF08496.10 gi|119720288|ref|YP_920783.1| - 0.021 14.9 0.0 0.023 14.8 0.0 1.0 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Troponin PF00992.20 gi|119720288|ref|YP_920783.1| - 0.029 14.7 3.9 0.036 14.4 3.9 1.0 1 0 0 1 1 1 0 Troponin BatA PF07584.11 gi|119720288|ref|YP_920783.1| - 0.03 14.7 2.0 0.047 14.1 2.0 1.5 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal PspB PF06667.12 gi|119720288|ref|YP_920783.1| - 0.037 14.1 0.6 0.05 13.7 0.6 1.1 1 0 0 1 1 1 0 Phage shock protein B TssO PF17561.2 gi|119720288|ref|YP_920783.1| - 0.04 14.0 0.0 0.049 13.7 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssO Halogen_Hydrol PF10112.9 gi|119720288|ref|YP_920783.1| - 0.045 13.8 0.0 0.046 13.7 0.0 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF3328 PF11807.8 gi|119720288|ref|YP_920783.1| - 0.097 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) BatD PF13584.6 gi|119720288|ref|YP_920783.1| - 0.12 11.1 0.0 0.14 10.9 0.0 1.0 1 0 0 1 1 1 0 Oxygen tolerance tRNA_anti-like PF12869.7 gi|119720288|ref|YP_920783.1| - 0.15 11.7 0.0 0.19 11.4 0.0 1.0 1 0 0 1 1 1 0 tRNA_anti-like XhlA PF10779.9 gi|119720288|ref|YP_920783.1| - 0.19 12.0 2.0 0.42 10.9 2.0 1.6 1 0 0 1 1 1 0 Haemolysin XhlA Afaf PF15339.6 gi|119720288|ref|YP_920783.1| - 0.19 11.4 0.1 0.24 11.1 0.1 1.2 1 0 0 1 1 1 0 Acrosome formation-associated factor DUF5326 PF17260.2 gi|119720288|ref|YP_920783.1| - 0.32 11.1 6.2 0.49 10.6 6.2 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF5326) RACo_C_ter PF14574.6 gi|119720289|ref|YP_920784.1| - 5e-85 284.7 0.0 1.3e-84 283.3 0.0 1.6 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|119720289|ref|YP_920784.1| - 1.9e-51 174.0 0.0 1.2e-50 171.4 0.0 2.1 2 0 0 2 2 2 1 RACo middle region RACo_linker PF17650.1 gi|119720289|ref|YP_920784.1| - 1.3e-13 50.6 0.0 2.8e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 RACo linker region Fer2 PF00111.27 gi|119720289|ref|YP_920784.1| - 1.2e-10 41.2 0.1 2.2e-10 40.3 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|119720289|ref|YP_920784.1| - 0.059 13.4 0.1 0.18 11.9 0.1 1.8 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain TOBE PF03459.17 gi|119720289|ref|YP_920784.1| - 0.096 13.0 0.1 0.096 13.0 0.1 4.0 5 0 0 5 5 5 0 TOBE domain MFS_1 PF07690.16 gi|119720290|ref|YP_920785.1| - 2.8e-24 85.7 62.4 4.5e-15 55.4 28.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|119720290|ref|YP_920785.1| - 0.0025 16.7 20.4 0.12 11.2 3.4 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter Methyltransf_25 PF13649.6 gi|119720291|ref|YP_920786.1| - 1.3e-09 38.6 0.1 2e-09 38.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119720291|ref|YP_920786.1| - 6.6e-06 26.0 0.0 8.9e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|119720291|ref|YP_920786.1| - 0.0051 16.4 0.0 0.0079 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|119720291|ref|YP_920786.1| - 0.01 15.7 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119720291|ref|YP_920786.1| - 0.023 14.0 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|119720291|ref|YP_920786.1| - 0.031 15.0 0.0 0.045 14.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|119720291|ref|YP_920786.1| - 0.035 13.4 0.0 0.054 12.8 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G 3HCDH_N PF02737.18 gi|119720291|ref|YP_920786.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_16 PF10294.9 gi|119720291|ref|YP_920786.1| - 0.23 11.2 0.0 0.33 10.7 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Hydrolase_4 PF12146.8 gi|119720292|ref|YP_920787.1| - 3.1e-71 239.4 0.0 3.6e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|119720292|ref|YP_920787.1| - 1.1e-16 61.3 0.2 6.2e-11 42.4 0.6 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|119720292|ref|YP_920787.1| - 4.2e-13 50.4 0.6 5e-13 50.2 0.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|119720292|ref|YP_920787.1| - 1.8e-10 40.6 1.4 6.2e-07 29.1 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.16 gi|119720292|ref|YP_920787.1| - 1e-05 25.5 0.6 0.00068 19.5 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase AXE1 PF05448.12 gi|119720292|ref|YP_920787.1| - 0.00012 20.9 0.4 0.022 13.5 0.0 2.4 2 1 1 3 3 3 2 Acetyl xylan esterase (AXE1) DLH PF01738.18 gi|119720292|ref|YP_920787.1| - 0.00041 20.0 0.0 0.01 15.4 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|119720292|ref|YP_920787.1| - 0.0027 17.4 0.0 0.0077 15.9 0.0 1.9 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_5 PF12695.7 gi|119720292|ref|YP_920787.1| - 0.0038 17.0 0.9 3.9 7.2 1.6 3.1 2 1 0 2 2 2 1 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|119720292|ref|YP_920787.1| - 0.004 16.9 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 PGAP1-like protein Lipase_3 PF01764.25 gi|119720292|ref|YP_920787.1| - 0.019 14.8 0.4 0.061 13.2 0.4 1.8 1 1 0 1 1 1 0 Lipase (class 3) Peptidase_S15 PF02129.18 gi|119720292|ref|YP_920787.1| - 0.059 13.0 0.0 8.2 5.9 0.0 2.1 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_3 PF07859.13 gi|119720292|ref|YP_920787.1| - 0.11 12.4 0.1 0.26 11.1 0.1 1.6 1 1 0 1 1 1 0 alpha/beta hydrolase fold Peptidase_S8 PF00082.22 gi|119720293|ref|YP_920788.1| - 7.7e-53 179.7 12.7 1e-52 179.3 12.7 1.1 1 0 0 1 1 1 1 Subtilase family PIN PF01850.21 gi|119720295|ref|YP_920790.1| - 2.6e-12 47.3 0.1 3.1e-12 47.1 0.1 1.0 1 0 0 1 1 1 1 PIN domain Lactamase_B PF00753.27 gi|119720296|ref|YP_920791.1| - 1.2e-13 51.5 0.1 2.1e-13 50.7 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119720296|ref|YP_920791.1| - 2.5e-11 43.5 0.0 5.2e-11 42.4 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|119720296|ref|YP_920791.1| - 0.0036 16.7 0.0 0.0062 16.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain DUF1945 PF09178.10 gi|119720296|ref|YP_920791.1| - 0.012 15.8 0.4 0.033 14.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) Lactamase_B_3 PF13483.6 gi|119720296|ref|YP_920791.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.5 2 0 0 2 2 2 0 Beta-lactamase superfamily domain DUF202 PF02656.15 gi|119720297|ref|YP_920792.1| - 1.2 9.7 13.1 31 5.1 11.4 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF202) NurA PF09376.10 gi|119720298|ref|YP_920793.1| - 2.7e-18 66.6 0.0 3.7e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 NurA domain Get5_bdg PF16843.5 gi|119720298|ref|YP_920793.1| - 0.19 11.3 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 Binding domain to Get4 on Get5, Golgi to ER traffic protein DUF87 PF01935.17 gi|119720299|ref|YP_920794.1| - 2.3e-33 116.2 0.0 4e-33 115.4 0.0 1.5 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|119720299|ref|YP_920794.1| - 0.00031 19.5 0.0 0.00068 18.4 0.0 1.5 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Glucosamine_iso PF01182.20 gi|119720299|ref|YP_920794.1| - 0.037 13.9 0.0 0.062 13.2 0.0 1.2 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TrwB_AAD_bind PF10412.9 gi|119720299|ref|YP_920794.1| - 0.039 12.9 0.0 0.3 10.0 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|119720299|ref|YP_920794.1| - 0.059 12.7 0.0 2.5 7.4 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family DEAD PF00270.29 gi|119720299|ref|YP_920794.1| - 0.088 12.6 0.0 11 5.8 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase PALP PF00291.25 gi|119720300|ref|YP_920795.1| - 2.7e-61 207.6 0.1 3.2e-61 207.3 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GHMP_kinases_C PF08544.13 gi|119720300|ref|YP_920795.1| - 0.16 12.4 0.6 2.4 8.6 0.1 2.4 2 0 0 2 2 2 0 GHMP kinases C terminal HEPN PF05168.14 gi|119720301|ref|YP_920796.1| - 3.4e-19 69.1 0.1 4.2e-19 68.8 0.1 1.1 1 0 0 1 1 1 1 HEPN domain MIT PF04212.18 gi|119720301|ref|YP_920796.1| - 0.0096 16.0 0.2 0.028 14.5 0.1 1.9 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain NTP_transf_2 PF01909.23 gi|119720302|ref|YP_920797.1| - 2.7e-09 37.2 0.3 4e-09 36.6 0.3 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720302|ref|YP_920797.1| - 2.7e-06 27.4 0.0 3.7e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|119720302|ref|YP_920797.1| - 0.032 14.0 0.0 0.074 12.9 0.0 1.5 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 DUF3368 PF11848.8 gi|119720302|ref|YP_920797.1| - 0.098 12.5 0.0 0.3 10.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) ABC2_membrane PF01061.24 gi|119720303|ref|YP_920798.1| - 5.5e-11 42.3 16.7 9.5e-11 41.5 16.7 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|119720303|ref|YP_920798.1| - 1.8e-08 33.9 12.7 1.8e-08 33.9 12.7 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|119720303|ref|YP_920798.1| - 2.9 7.1 14.6 1.9 7.7 12.9 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|119720304|ref|YP_920799.1| - 1.7e-11 43.9 18.8 1.7e-11 43.9 18.8 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|119720304|ref|YP_920799.1| - 8.6e-11 41.5 15.4 8.6e-11 41.5 15.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.11 gi|119720304|ref|YP_920799.1| - 4.8e-07 29.8 5.1 7.2e-07 29.2 5.1 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein CCB1 PF12046.8 gi|119720304|ref|YP_920799.1| - 0.018 14.4 4.0 0.036 13.4 4.0 1.4 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B DUF2254 PF10011.9 gi|119720304|ref|YP_920799.1| - 1.9 7.2 9.4 0.035 12.9 2.5 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) ABC_tran PF00005.27 gi|119720305|ref|YP_920800.1| - 4.5e-28 98.5 0.0 8.2e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720305|ref|YP_920800.1| - 5.8e-15 55.9 3.3 3.2e-10 40.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|119720305|ref|YP_920800.1| - 3.8e-08 33.9 0.0 8.7e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) Rad17 PF03215.15 gi|119720305|ref|YP_920800.1| - 9.7e-06 25.6 0.0 1.5e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|119720305|ref|YP_920800.1| - 0.00033 20.3 0.0 0.00081 19.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|119720305|ref|YP_920800.1| - 0.0011 18.8 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|119720305|ref|YP_920800.1| - 0.0075 16.8 3.0 0.047 14.2 3.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720305|ref|YP_920800.1| - 0.025 15.0 0.0 0.058 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|119720305|ref|YP_920800.1| - 0.041 13.7 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA PF00004.29 gi|119720305|ref|YP_920800.1| - 0.051 14.0 0.2 0.44 11.0 0.2 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|119720305|ref|YP_920800.1| - 0.086 13.4 0.1 0.37 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|119720305|ref|YP_920800.1| - 0.16 11.4 0.1 16 4.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|119720305|ref|YP_920800.1| - 0.3 10.8 0.5 1.8 8.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain PadR PF03551.14 gi|119720306|ref|YP_920801.1| - 9.1e-20 70.4 0.1 1.3e-19 69.9 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|119720306|ref|YP_920801.1| - 8.8e-06 25.7 0.0 2.1e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|119720306|ref|YP_920801.1| - 0.00048 19.9 0.0 1.4 8.9 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|119720306|ref|YP_920801.1| - 0.0015 18.4 3.1 0.0021 18.0 1.1 2.2 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|119720306|ref|YP_920801.1| - 0.0017 18.2 0.4 0.0072 16.2 0.1 2.2 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB RTP PF02334.16 gi|119720306|ref|YP_920801.1| - 0.0038 17.9 0.0 0.0057 17.3 0.0 1.3 1 0 0 1 1 1 1 Replication terminator protein DUF505 PF04458.12 gi|119720306|ref|YP_920801.1| - 0.0064 14.9 0.0 0.0084 14.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) AphA_like PF14557.6 gi|119720306|ref|YP_920801.1| - 0.012 15.3 0.0 0.025 14.3 0.0 1.4 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator DUF3116 PF11313.8 gi|119720306|ref|YP_920801.1| - 0.04 13.8 0.3 0.067 13.1 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HxlR PF01638.17 gi|119720306|ref|YP_920801.1| - 0.044 13.6 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF4364 PF14277.6 gi|119720306|ref|YP_920801.1| - 0.046 13.5 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|119720306|ref|YP_920801.1| - 0.051 14.1 0.1 0.19 12.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|119720306|ref|YP_920801.1| - 0.054 13.5 0.3 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix MarR PF01047.22 gi|119720306|ref|YP_920801.1| - 0.069 13.1 0.0 0.24 11.3 0.0 1.9 1 0 0 1 1 1 0 MarR family BLACT_WH PF17778.1 gi|119720306|ref|YP_920801.1| - 0.077 13.0 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain Mrr_N PF14338.6 gi|119720306|ref|YP_920801.1| - 0.096 12.8 0.3 3.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Mrr N-terminal domain DUF1495 PF07381.11 gi|119720306|ref|YP_920801.1| - 0.11 12.4 0.1 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) CARDB PF07705.11 gi|119720307|ref|YP_920802.1| - 1.4e-09 38.1 0.8 0.45 10.8 0.0 4.5 4 0 0 4 4 4 3 CARDB NPCBM_assoc PF10633.9 gi|119720307|ref|YP_920802.1| - 0.021 15.1 11.9 0.046 14.0 1.0 4.8 4 2 1 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase MacB_PCD PF12704.7 gi|119720308|ref|YP_920803.1| - 7.6e-15 55.8 4.7 1.5e-14 54.8 4.7 1.5 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|119720308|ref|YP_920803.1| - 1.2e-10 41.7 4.6 1.2e-10 41.7 4.6 3.4 3 0 0 3 3 3 1 FtsX-like permease family Formyl_trans_N PF00551.19 gi|119720308|ref|YP_920803.1| - 0.0024 17.6 0.0 0.048 13.4 0.0 2.2 2 0 0 2 2 2 1 Formyl transferase ABC_tran PF00005.27 gi|119720309|ref|YP_920804.1| - 6.6e-30 104.4 0.0 8.4e-30 104.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720309|ref|YP_920804.1| - 2.6e-07 30.8 0.2 0.012 15.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119720309|ref|YP_920804.1| - 0.00029 21.1 0.4 0.0034 17.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|119720309|ref|YP_920804.1| - 0.0021 17.7 0.1 0.29 10.7 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119720309|ref|YP_920804.1| - 0.0023 18.4 0.5 0.004 17.5 0.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119720309|ref|YP_920804.1| - 0.0025 17.5 0.1 0.0046 16.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720309|ref|YP_920804.1| - 0.0044 16.5 0.0 1.5 8.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|119720309|ref|YP_920804.1| - 0.0047 16.4 0.2 0.2 11.1 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_33 PF13671.6 gi|119720309|ref|YP_920804.1| - 0.018 15.2 0.3 0.052 13.7 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119720309|ref|YP_920804.1| - 0.025 14.3 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|119720309|ref|YP_920804.1| - 0.027 15.0 0.0 0.043 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119720309|ref|YP_920804.1| - 0.04 13.5 0.0 0.078 12.6 0.0 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|119720309|ref|YP_920804.1| - 0.049 13.5 0.1 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|119720309|ref|YP_920804.1| - 0.097 12.9 0.1 1.6 9.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|119720309|ref|YP_920804.1| - 0.17 11.8 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase RNA12 PF10443.9 gi|119720309|ref|YP_920804.1| - 0.18 10.5 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein DUF2127 PF09900.9 gi|119720311|ref|YP_920806.1| - 0.011 16.0 12.2 0.011 16.0 12.2 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2127) Molybdopterin PF00384.22 gi|119720313|ref|YP_920808.1| - 3.3e-42 144.9 0.0 3.6e-41 141.5 0.0 2.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|119720313|ref|YP_920808.1| - 2.6e-13 49.7 0.0 5.1e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|119720313|ref|YP_920808.1| - 1.9e-12 47.2 0.0 4.5e-12 46.0 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|119720313|ref|YP_920808.1| - 0.00054 19.7 0.1 0.0014 18.4 0.1 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MazE_antitoxin PF04014.18 gi|119720313|ref|YP_920808.1| - 0.004 17.1 0.2 0.036 14.0 0.0 2.6 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin AAA-ATPase_like PF09820.9 gi|119720313|ref|YP_920808.1| - 0.016 14.7 0.1 0.026 13.9 0.1 1.2 1 0 0 1 1 1 0 Predicted AAA-ATPase Fer4_11 PF13247.6 gi|119720314|ref|YP_920809.1| - 2.6e-22 78.8 10.4 2.6e-22 78.8 10.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119720314|ref|YP_920809.1| - 1e-13 51.6 24.7 3.3e-07 30.8 5.7 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119720314|ref|YP_920809.1| - 2.4e-12 46.1 40.4 8.2e-07 28.6 3.2 5.3 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119720314|ref|YP_920809.1| - 4.4e-11 42.7 28.7 4.1e-06 26.8 10.6 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119720314|ref|YP_920809.1| - 5.8e-11 42.4 24.7 1.8e-05 24.8 8.3 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119720314|ref|YP_920809.1| - 2.1e-08 33.9 40.1 0.00023 21.1 3.0 5.0 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119720314|ref|YP_920809.1| - 4.2e-08 32.8 37.4 0.00015 21.7 2.6 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119720314|ref|YP_920809.1| - 1.5e-07 31.4 26.1 3.7e-05 23.8 10.2 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119720314|ref|YP_920809.1| - 2.3e-06 28.0 24.1 7.9e-05 23.0 3.9 3.6 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119720314|ref|YP_920809.1| - 3.9e-06 27.4 41.1 0.12 13.3 2.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119720314|ref|YP_920809.1| - 4.4e-05 24.3 25.8 1 10.3 2.9 4.8 3 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|119720314|ref|YP_920809.1| - 0.0002 21.6 37.8 0.0019 18.6 3.5 4.5 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119720314|ref|YP_920809.1| - 0.0074 17.0 24.1 0.12 13.2 1.7 4.2 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|119720314|ref|YP_920809.1| - 0.02 15.1 1.9 0.02 15.1 1.9 3.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119720314|ref|YP_920809.1| - 0.029 14.9 0.8 0.029 14.9 0.8 4.1 3 2 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|119720314|ref|YP_920809.1| - 1.2 9.7 31.3 14 6.3 3.9 4.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain Ni_hydr_CYTB PF01292.20 gi|119720315|ref|YP_920810.1| - 1.9e-13 50.4 9.6 2.2e-13 50.2 9.6 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 FdhE PF04216.12 gi|119720316|ref|YP_920811.1| - 1.5e-06 28.3 0.7 1.8e-06 28.1 0.7 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-H2C2_2 PF13465.6 gi|119720316|ref|YP_920811.1| - 0.0024 18.2 4.6 8.3 7.0 0.1 3.4 3 0 0 3 3 3 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|119720316|ref|YP_920811.1| - 0.0032 17.4 10.4 0.0093 15.9 2.8 2.9 3 0 0 3 3 3 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119720316|ref|YP_920811.1| - 0.015 15.2 6.8 0.027 14.4 1.0 2.8 2 1 2 4 4 3 0 Putative transposase DNA-binding domain DUF3268 PF11672.8 gi|119720316|ref|YP_920811.1| - 0.025 14.9 0.8 0.075 13.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain zinc_ribbon_9 PF14369.6 gi|119720316|ref|YP_920811.1| - 0.033 14.5 2.8 7.6 6.9 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon zf-TFIIB PF13453.6 gi|119720316|ref|YP_920811.1| - 0.039 13.3 4.9 0.8 9.1 0.2 3.1 4 0 0 4 4 4 0 Transcription factor zinc-finger Nudix_N_2 PF14803.6 gi|119720316|ref|YP_920811.1| - 0.043 13.7 5.1 3.6 7.6 0.1 3.8 3 0 0 3 3 3 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|119720316|ref|YP_920811.1| - 0.049 13.2 8.4 3.4 7.3 4.0 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding CpXC PF14353.6 gi|119720316|ref|YP_920811.1| - 0.064 13.3 5.6 0.13 12.3 3.3 2.4 1 1 1 2 2 2 0 CpXC protein Elf1 PF05129.13 gi|119720316|ref|YP_920811.1| - 0.068 13.2 4.8 0.83 9.7 3.1 2.4 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|119720316|ref|YP_920811.1| - 0.089 12.2 10.2 6 6.4 0.4 3.7 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|119720316|ref|YP_920811.1| - 0.1 12.6 7.4 0.93 9.5 4.0 3.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2225 PF09986.9 gi|119720316|ref|YP_920811.1| - 0.2 11.3 1.4 0.93 9.2 0.0 2.4 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) Lar_restr_allev PF14354.6 gi|119720316|ref|YP_920811.1| - 0.21 12.0 10.2 0.44 10.9 0.5 2.8 2 1 1 3 3 3 0 Restriction alleviation protein Lar Trm112p PF03966.16 gi|119720316|ref|YP_920811.1| - 0.34 11.5 4.3 1.9 9.1 0.6 2.7 3 0 0 3 3 3 0 Trm112p-like protein Ogr_Delta PF04606.12 gi|119720316|ref|YP_920811.1| - 0.77 9.8 8.4 0.24 11.4 1.2 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DZR PF12773.7 gi|119720316|ref|YP_920811.1| - 0.86 9.7 8.5 16 5.6 7.7 2.7 2 1 0 2 2 1 0 Double zinc ribbon zf-HYPF PF07503.12 gi|119720316|ref|YP_920811.1| - 0.92 9.3 8.7 0.67 9.8 0.5 3.3 3 0 0 3 3 3 0 HypF finger TFIIS_C PF01096.18 gi|119720316|ref|YP_920811.1| - 1.9 8.4 6.6 39 4.2 0.2 3.5 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Rubredoxin PF00301.20 gi|119720316|ref|YP_920811.1| - 2.1 8.4 8.5 14 5.8 0.2 3.6 3 1 1 4 4 4 0 Rubredoxin zf-Mss51 PF13824.6 gi|119720316|ref|YP_920811.1| - 2.5 8.3 6.9 6.7 6.9 2.5 2.7 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|119720316|ref|YP_920811.1| - 2.5 8.3 13.0 15 5.8 1.2 3.8 3 1 0 4 4 3 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|119720316|ref|YP_920811.1| - 4.9 6.9 10.3 21 4.9 0.6 3.4 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 gi|119720316|ref|YP_920811.1| - 6.6 6.6 12.6 22 4.9 1.6 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|119720316|ref|YP_920811.1| - 8.4 7.1 8.1 65 4.3 0.8 3.6 3 0 0 3 3 3 0 Zinc finger, C2H2 type Fer4_6 PF12837.7 gi|119720317|ref|YP_920812.1| - 8e-13 47.9 27.7 2.9e-06 27.1 1.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119720317|ref|YP_920812.1| - 4.8e-12 45.8 49.5 1.5e-06 28.2 13.1 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|119720317|ref|YP_920812.1| - 2.6e-11 43.5 11.8 2.6e-11 43.5 11.8 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119720317|ref|YP_920812.1| - 1.1e-09 38.8 25.2 1.5e-05 25.5 12.5 3.7 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119720317|ref|YP_920812.1| - 1.5e-08 34.3 30.9 5.9e-05 22.9 3.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119720317|ref|YP_920812.1| - 1.2e-07 31.8 21.0 5.7e-05 23.2 7.5 3.4 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119720317|ref|YP_920812.1| - 1.2e-06 28.5 25.9 0.00039 20.5 12.2 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119720317|ref|YP_920812.1| - 1.9e-06 27.4 12.8 5.2e-06 26.0 3.6 5.0 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119720317|ref|YP_920812.1| - 1.8e-05 24.9 30.0 0.00056 20.2 2.0 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119720317|ref|YP_920812.1| - 0.00014 22.6 40.0 0.013 16.4 5.7 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119720317|ref|YP_920812.1| - 0.018 16.0 3.4 0.018 16.0 3.4 4.1 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|119720317|ref|YP_920812.1| - 0.064 13.8 3.1 0.064 13.8 3.1 4.1 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119720317|ref|YP_920812.1| - 0.24 12.1 16.0 1 10.1 9.3 3.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|119720317|ref|YP_920812.1| - 3.4 8.2 29.6 6.8 7.2 20.6 3.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain AFOR_C PF01314.18 gi|119720318|ref|YP_920813.1| - 2.1e-74 250.9 0.0 3.3e-74 250.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|119720318|ref|YP_920813.1| - 1.7e-59 201.0 0.1 2.9e-59 200.3 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PaREP1 PF05942.11 gi|119720319|ref|YP_920814.1| - 2.2e-24 85.6 3.9 3e-24 85.2 3.9 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|119720319|ref|YP_920814.1| - 0.0011 19.0 4.1 0.0014 18.7 1.8 2.1 2 1 0 2 2 2 1 HEPN domain DUF5618 PF18498.1 gi|119720319|ref|YP_920814.1| - 0.0029 17.8 0.0 0.004 17.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) Polbeta PF18765.1 gi|119720320|ref|YP_920815.1| - 2.2e-08 34.1 0.0 2.7e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|119720320|ref|YP_920815.1| - 2.9e-07 30.7 0.0 4.6e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.13 gi|119720320|ref|YP_920815.1| - 0.0005 19.9 0.0 0.00076 19.3 0.0 1.3 1 1 0 1 1 1 1 Putative nucleotidyltransferase DUF294 Aminotran_1_2 PF00155.21 gi|119720322|ref|YP_920817.1| - 1.1e-53 182.7 0.0 1.2e-53 182.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CarboxypepD_reg PF13620.6 gi|119720323|ref|YP_920818.1| - 5.4e-09 36.2 9.0 3.3e-07 30.5 1.8 2.2 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_6 PF17936.1 gi|119720323|ref|YP_920818.1| - 0.0047 17.2 0.4 0.14 12.4 0.2 2.4 2 0 0 2 2 2 1 Bacterial Ig domain Invasin_D3 PF09134.10 gi|119720323|ref|YP_920818.1| - 0.0063 16.8 1.1 0.015 15.6 0.8 1.8 1 1 1 2 2 2 1 Invasin, domain 3 Big_3_5 PF16640.5 gi|119720323|ref|YP_920818.1| - 0.0064 16.6 2.8 0.0064 16.6 2.8 2.2 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 3) Big_1 PF02369.16 gi|119720323|ref|YP_920818.1| - 0.017 15.1 0.5 0.1 12.6 0.1 2.2 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF824 PF05688.11 gi|119720323|ref|YP_920818.1| - 0.028 14.3 0.0 0.078 12.8 0.0 1.7 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) ABC_tran PF00005.27 gi|119720324|ref|YP_920819.1| - 1.3e-24 87.3 0.0 1.7e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720324|ref|YP_920819.1| - 7.3e-13 49.0 0.1 2.9e-07 30.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|119720324|ref|YP_920819.1| - 0.0044 16.8 0.1 0.015 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|119720324|ref|YP_920819.1| - 0.0088 16.6 0.0 0.014 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720324|ref|YP_920819.1| - 0.0099 16.3 0.0 0.022 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119720324|ref|YP_920819.1| - 0.01 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119720324|ref|YP_920819.1| - 0.016 15.5 0.0 0.053 13.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|119720324|ref|YP_920819.1| - 0.032 13.8 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119720324|ref|YP_920819.1| - 0.067 13.5 0.1 0.25 11.7 0.1 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|119720324|ref|YP_920819.1| - 0.088 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MukB PF04310.12 gi|119720324|ref|YP_920819.1| - 0.089 12.6 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA PF00004.29 gi|119720324|ref|YP_920819.1| - 0.12 12.9 0.0 0.31 11.5 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Polbeta PF18765.1 gi|119720327|ref|YP_920822.1| - 3e-22 78.5 0.0 3.8e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|119720327|ref|YP_920822.1| - 3.6e-09 36.8 0.3 6.4e-09 36.0 0.2 1.5 1 1 1 2 2 2 1 Nucleotidyltransferase domain RlaP PF10127.9 gi|119720327|ref|YP_920822.1| - 0.0052 16.4 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 RNA repair pathway DNA polymerase beta family FmdE PF02663.14 gi|119720328|ref|YP_920823.1| - 1.3e-35 122.3 0.0 1.8e-35 121.8 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|119720328|ref|YP_920823.1| - 5.3e-08 32.7 1.5 5.8e-08 32.5 0.3 1.7 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|119720328|ref|YP_920823.1| - 0.3 10.5 0.1 0.3 10.5 0.1 2.5 4 0 0 4 4 4 0 zinc-ribbon domain Peripla_BP_2 PF01497.18 gi|119720329|ref|YP_920824.1| - 1.5e-23 83.6 0.0 2.3e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|119720330|ref|YP_920825.1| - 4.9e-80 268.9 38.8 5.9e-80 268.6 38.8 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|119720330|ref|YP_920825.1| - 0.0021 17.6 17.9 0.0021 17.6 17.9 2.1 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 gi|119720331|ref|YP_920826.1| - 1.5e-31 109.7 0.0 2e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720331|ref|YP_920826.1| - 5.2e-13 49.5 0.3 5.1e-07 29.8 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119720331|ref|YP_920826.1| - 4.4e-06 27.3 0.0 5.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119720331|ref|YP_920826.1| - 1.3e-05 24.8 0.0 2.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720331|ref|YP_920826.1| - 2.8e-05 23.7 0.0 0.0012 18.3 0.0 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119720331|ref|YP_920826.1| - 3.2e-05 24.2 0.1 0.00036 20.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119720331|ref|YP_920826.1| - 4.1e-05 23.5 0.0 0.00045 20.0 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|119720331|ref|YP_920826.1| - 7.5e-05 23.2 0.3 0.0003 21.2 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|119720331|ref|YP_920826.1| - 0.0024 16.7 0.3 0.014 14.2 0.0 2.1 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|119720331|ref|YP_920826.1| - 0.0086 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain HTH_28 PF13518.6 gi|119720331|ref|YP_920826.1| - 0.011 15.9 1.9 1.4 9.1 0.1 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain AAA_30 PF13604.6 gi|119720331|ref|YP_920826.1| - 0.016 15.0 0.1 0.051 13.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|119720331|ref|YP_920826.1| - 0.019 15.5 0.0 0.035 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119720331|ref|YP_920826.1| - 0.035 14.5 0.0 0.13 12.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|119720331|ref|YP_920826.1| - 0.038 13.4 0.0 0.083 12.3 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|119720331|ref|YP_920826.1| - 0.045 13.6 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Sigma70_r4_2 PF08281.12 gi|119720331|ref|YP_920826.1| - 0.051 13.3 0.1 3 7.6 0.0 3.0 3 0 0 3 3 2 0 Sigma-70, region 4 NACHT PF05729.12 gi|119720331|ref|YP_920826.1| - 0.054 13.4 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PRK PF00485.18 gi|119720331|ref|YP_920826.1| - 0.092 12.5 0.0 0.24 11.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|119720331|ref|YP_920826.1| - 0.1 12.6 0.0 1.2 9.1 0.0 2.5 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|119720331|ref|YP_920826.1| - 0.12 12.7 0.1 0.43 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|119720331|ref|YP_920826.1| - 0.12 12.0 0.0 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|119720331|ref|YP_920826.1| - 0.15 12.1 0.0 0.38 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|119720331|ref|YP_920826.1| - 0.16 12.1 0.1 0.22 11.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|119720331|ref|YP_920826.1| - 0.17 11.0 0.0 0.3 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 gi|119720331|ref|YP_920826.1| - 0.18 12.1 0.0 1.6 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|119720331|ref|YP_920826.1| - 0.26 8.8 0.0 0.33 8.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|119720331|ref|YP_920826.1| - 0.29 9.7 0.0 0.52 8.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain E1-E2_ATPase PF00122.20 gi|119720332|ref|YP_920827.1| - 1.1e-45 155.4 3.9 1.1e-45 155.4 3.9 2.4 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|119720332|ref|YP_920827.1| - 7.2e-29 101.6 0.1 1.3e-28 100.7 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|119720332|ref|YP_920827.1| - 3.8e-16 58.5 0.1 1e-15 57.2 0.0 1.8 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|119720332|ref|YP_920827.1| - 1.6e-07 31.3 0.1 1.9e-06 27.8 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|119720332|ref|YP_920827.1| - 0.0051 16.9 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|119720332|ref|YP_920827.1| - 0.063 13.7 0.2 2.5 8.5 0.0 2.9 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Thioredoxin_2 PF13098.6 gi|119720333|ref|YP_920828.1| - 3.5e-08 33.9 0.2 1.5e-06 28.6 0.2 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|119720333|ref|YP_920828.1| - 4.2e-07 29.9 0.0 7.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|119720333|ref|YP_920828.1| - 0.00026 21.0 0.0 0.00042 20.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DsbD PF02683.15 gi|119720333|ref|YP_920828.1| - 0.0012 18.8 15.6 0.11 12.4 5.1 2.3 2 0 0 2 2 2 2 Cytochrome C biogenesis protein transmembrane region VirB8 PF04335.13 gi|119720333|ref|YP_920828.1| - 0.0099 15.7 0.1 0.0099 15.7 0.1 2.2 2 0 0 2 2 2 1 VirB8 protein TraF PF13728.6 gi|119720333|ref|YP_920828.1| - 0.22 11.3 0.0 0.38 10.5 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein PDDEXK_10 PF07788.11 gi|119720334|ref|YP_920829.1| - 5.2e-25 87.2 0.1 6.8e-25 86.8 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|119720334|ref|YP_920829.1| - 5.5e-15 55.3 0.4 8.6e-15 54.7 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) DUF4143 PF13635.6 gi|119720334|ref|YP_920829.1| - 0.0054 16.9 0.2 0.0073 16.5 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) TraO PF10626.9 gi|119720334|ref|YP_920829.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Conjugative transposon protein TraO UPF0102 PF02021.17 gi|119720334|ref|YP_920829.1| - 0.018 15.3 0.2 0.028 14.7 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 DUF3883 PF13020.6 gi|119720334|ref|YP_920829.1| - 0.072 13.1 0.0 0.084 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) Herpes_HEPA PF03324.14 gi|119720334|ref|YP_920829.1| - 0.1 13.1 0.0 0.15 12.6 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus DNA helicase/primase complex associated protein AHJR-like PF18743.1 gi|119720334|ref|YP_920829.1| - 0.14 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 REase_AHJR-like AhpC-TSA PF00578.21 gi|119720335|ref|YP_920830.1| - 1.9e-38 131.1 0.0 2.2e-38 130.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|119720335|ref|YP_920830.1| - 1.1e-25 90.0 0.0 1.3e-25 89.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|119720335|ref|YP_920830.1| - 0.00046 20.5 0.0 0.00058 20.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.6 gi|119720335|ref|YP_920830.1| - 0.0019 18.3 0.0 0.0046 17.1 0.0 1.5 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|119720335|ref|YP_920830.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) PHP_C PF13263.6 gi|119720336|ref|YP_920831.1| - 0.00084 19.0 0.3 0.0038 17.0 0.1 2.3 2 1 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|119720336|ref|YP_920831.1| - 0.0031 17.8 0.0 0.0039 17.5 0.0 1.3 1 0 0 1 1 1 1 PHP domain HEPN PF05168.14 gi|119720337|ref|YP_920832.1| - 7.4e-09 35.8 0.0 8.8e-09 35.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF4129 PF13559.6 gi|119720337|ref|YP_920832.1| - 0.035 14.4 0.3 0.044 14.0 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) NTP_transf_2 PF01909.23 gi|119720338|ref|YP_920833.1| - 2e-08 34.4 0.0 2.7e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720338|ref|YP_920833.1| - 1.7e-07 31.2 0.0 2.1e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase S1-like PF14444.6 gi|119720338|ref|YP_920833.1| - 0.14 12.1 0.3 0.25 11.3 0.3 1.4 1 1 0 1 1 1 0 S1-like HEPN PF05168.14 gi|119720339|ref|YP_920834.1| - 2.5e-06 27.6 0.0 3.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 HEPN domain CcdA PF07362.12 gi|119720340|ref|YP_920835.1| - 0.0004 20.7 1.6 0.00063 20.1 1.6 1.3 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_3 PF12651.7 gi|119720340|ref|YP_920835.1| - 0.0084 16.1 0.8 0.023 14.7 0.8 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|119720340|ref|YP_920835.1| - 0.032 14.2 4.9 0.032 14.2 4.9 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family ALMT PF11744.8 gi|119720340|ref|YP_920835.1| - 0.061 12.1 0.1 0.072 11.9 0.1 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter Imm70 PF15601.6 gi|119720340|ref|YP_920835.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 70 PSK_trans_fac PF07704.11 gi|119720340|ref|YP_920835.1| - 0.27 12.0 9.4 0.38 11.5 9.4 1.3 1 0 0 1 1 1 0 Rv0623-like transcription factor PIN PF01850.21 gi|119720341|ref|YP_920836.1| - 1.6e-07 31.8 0.2 2.1e-07 31.5 0.2 1.3 1 1 0 1 1 1 1 PIN domain DUF948 PF06103.11 gi|119720342|ref|YP_920837.1| - 0.00062 20.0 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) FlaC_arch PF05377.11 gi|119720342|ref|YP_920837.1| - 0.045 14.2 0.0 0.088 13.2 0.0 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Prefoldin_3 PF13758.6 gi|119720342|ref|YP_920837.1| - 0.046 13.8 0.0 0.096 12.8 0.0 1.6 1 0 0 1 1 1 0 Prefoldin subunit PAH PF02671.21 gi|119720342|ref|YP_920837.1| - 0.048 13.8 0.0 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 Paired amphipathic helix repeat Filo_VP35 PF02097.15 gi|119720342|ref|YP_920837.1| - 0.089 11.8 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Filoviridae VP35 DASH_Dam1 PF08653.10 gi|119720342|ref|YP_920837.1| - 0.096 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 DASH complex subunit Dam1 Sugarporin_N PF11471.8 gi|119720342|ref|YP_920837.1| - 0.15 12.0 0.5 0.66 10.0 0.5 2.1 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension MFS_1 PF07690.16 gi|119720343|ref|YP_920838.1| - 0.65 8.9 37.3 0.049 12.5 31.3 1.9 1 1 0 1 1 1 0 Major Facilitator Superfamily Marek_SORF3 PF07153.11 gi|119720344|ref|YP_920839.1| - 0.0051 16.2 0.2 0.006 15.9 0.2 1.3 1 1 0 1 1 1 1 Marek's disease-like virus SORF3 protein DUF4501 PF14946.6 gi|119720344|ref|YP_920839.1| - 0.11 12.6 0.3 0.22 11.6 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) SLATT_1 PF18181.1 gi|119720344|ref|YP_920839.1| - 1.7 8.6 5.2 8.8 6.3 0.4 2.4 2 1 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 DUF87 PF01935.17 gi|119720345|ref|YP_920840.1| - 3.7e-14 53.4 0.0 1e-13 52.0 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|119720345|ref|YP_920840.1| - 0.00021 20.8 0.1 0.0004 19.8 0.1 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|119720345|ref|YP_920840.1| - 0.051 12.5 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|119720345|ref|YP_920840.1| - 0.12 11.2 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.10 gi|119720346|ref|YP_920841.1| - 0.00065 19.5 0.0 0.031 13.9 0.0 2.3 1 1 0 1 1 1 1 NurA domain HTH_27 PF13463.6 gi|119720347|ref|YP_920842.1| - 0.009 16.5 0.2 0.033 14.7 0.2 2.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|119720347|ref|YP_920842.1| - 0.062 13.2 0.2 0.25 11.2 0.2 2.0 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|119720347|ref|YP_920842.1| - 0.091 12.8 0.1 0.84 9.7 0.1 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain PaREP1 PF05942.11 gi|119720348|ref|YP_920843.1| - 2e-06 27.7 1.7 4.6e-06 26.5 0.4 2.0 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|119720348|ref|YP_920843.1| - 0.0015 18.7 0.0 0.0034 17.6 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF5618) Maf PF02545.14 gi|119720348|ref|YP_920843.1| - 0.0036 17.2 0.0 0.0079 16.1 0.0 1.5 2 0 0 2 2 2 1 Maf-like protein COX2-transmemb PF09125.10 gi|119720348|ref|YP_920843.1| - 0.095 12.5 0.6 0.24 11.2 0.0 1.8 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane NAD_synthase PF02540.17 gi|119720349|ref|YP_920844.1| - 3.5e-72 242.4 0.0 4e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|119720349|ref|YP_920844.1| - 7.5e-06 25.8 0.0 1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|119720349|ref|YP_920844.1| - 2.4e-05 23.3 0.0 0.015 14.1 0.0 2.4 2 0 0 2 2 2 2 tRNA methyl transferase Sigma70_r4_2 PF08281.12 gi|119720349|ref|YP_920844.1| - 0.016 14.8 0.0 0.43 10.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|119720349|ref|YP_920844.1| - 0.017 14.6 0.2 0.068 12.7 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 ThiI PF02568.14 gi|119720349|ref|YP_920844.1| - 0.11 12.1 0.0 0.25 10.9 0.0 1.5 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Sigma70_r3 PF04539.16 gi|119720349|ref|YP_920844.1| - 0.19 11.9 0.2 0.45 10.6 0.2 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 CN_hydrolase PF00795.22 gi|119720350|ref|YP_920845.1| - 5.4e-40 137.4 0.0 6.3e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase ABC2_membrane_3 PF12698.7 gi|119720351|ref|YP_920846.1| - 5.3e-20 71.8 15.1 1.9e-19 70.0 15.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|119720351|ref|YP_920846.1| - 1.1e-18 67.4 21.1 1.5e-16 60.5 11.6 2.5 3 0 0 3 3 3 2 ABC-2 type transporter SBP_bac_3 PF00497.20 gi|119720351|ref|YP_920846.1| - 0.099 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Smr PF01713.21 gi|119720351|ref|YP_920846.1| - 0.17 12.3 0.1 0.44 10.9 0.1 1.8 1 0 0 1 1 1 0 Smr domain ABC_tran PF00005.27 gi|119720352|ref|YP_920847.1| - 4.6e-27 95.2 0.0 7e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720352|ref|YP_920847.1| - 1.6e-14 54.4 0.0 2.3e-09 37.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119720352|ref|YP_920847.1| - 0.00038 20.1 0.1 0.001 18.7 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720352|ref|YP_920847.1| - 0.0005 19.6 0.0 0.18 11.2 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720352|ref|YP_920847.1| - 0.001 19.5 0.4 0.82 10.0 0.2 2.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.6 gi|119720352|ref|YP_920847.1| - 0.0032 17.5 0.1 0.78 9.8 0.0 2.9 2 1 1 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|119720352|ref|YP_920847.1| - 0.0053 16.5 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|119720352|ref|YP_920847.1| - 0.0087 16.3 0.0 0.11 12.8 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|119720352|ref|YP_920847.1| - 0.021 14.4 0.1 0.068 12.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|119720352|ref|YP_920847.1| - 0.051 14.1 0.0 0.09 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119720352|ref|YP_920847.1| - 0.088 12.5 0.3 0.38 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|119720352|ref|YP_920847.1| - 0.099 12.3 0.0 0.43 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|119720352|ref|YP_920847.1| - 0.16 12.1 0.7 1.7 8.8 0.2 2.3 3 0 0 3 3 3 0 AAA domain Asp_protease_2 PF13650.6 gi|119720353|ref|YP_920848.1| - 1e-11 45.3 0.1 2.7e-11 43.9 0.1 1.7 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|119720353|ref|YP_920848.1| - 2.2e-10 41.0 0.1 3.4e-10 40.4 0.1 1.3 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease PF09668.10 gi|119720353|ref|YP_920848.1| - 0.024 14.4 0.0 0.032 14.0 0.0 1.3 1 1 0 1 1 1 0 Aspartyl protease Peptidase_U4 PF03419.13 gi|119720353|ref|YP_920848.1| - 0.03 13.6 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Peptidase_A3 PF02160.15 gi|119720353|ref|YP_920848.1| - 0.054 13.0 0.0 0.06 12.8 0.0 1.1 1 0 0 1 1 1 0 Cauliflower mosaic virus peptidase (A3) Asp PF00026.23 gi|119720353|ref|YP_920848.1| - 0.14 11.5 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic aspartyl protease AdoHcyase PF05221.17 gi|119720353|ref|YP_920848.1| - 0.17 11.0 0.0 3.1 6.9 0.0 2.0 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase UbiA PF01040.18 gi|119720354|ref|YP_920849.1| - 7.5e-35 120.4 20.6 9.9e-35 120.0 20.6 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3040 PF11239.8 gi|119720354|ref|YP_920849.1| - 2.5 8.4 0.0 2.5 8.4 0.0 4.1 4 1 1 5 5 5 0 Protein of unknown function (DUF3040) BPD_transp_1 PF00528.22 gi|119720356|ref|YP_920851.1| - 2.1e-13 50.4 19.4 2.1e-13 50.4 19.4 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119720357|ref|YP_920852.1| - 1.9e-17 63.6 20.6 1.9e-17 63.6 20.6 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|119720357|ref|YP_920852.1| - 0.03 14.5 1.1 0.1 12.7 1.1 1.9 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_8 PF13416.6 gi|119720358|ref|YP_920853.1| - 4.3e-53 180.9 1.9 5.9e-53 180.5 1.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119720358|ref|YP_920853.1| - 2e-42 146.3 9.7 2.9e-42 145.7 9.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|119720358|ref|YP_920853.1| - 5.8e-07 29.2 0.1 2.8e-05 23.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Alpha-amylase PF00128.24 gi|119720359|ref|YP_920854.1| - 8.9e-59 199.7 5.2 1.3e-58 199.2 5.2 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain CBM_20 PF00686.19 gi|119720359|ref|YP_920854.1| - 6e-15 54.9 0.3 2e-14 53.3 0.0 2.1 2 0 0 2 2 2 1 Starch binding domain TIG PF01833.24 gi|119720359|ref|YP_920854.1| - 2.1e-07 30.9 1.0 4.8e-07 29.7 1.0 1.7 1 0 0 1 1 1 1 IPT/TIG domain Bac_A_amyl_C PF18612.1 gi|119720359|ref|YP_920854.1| - 0.018 14.8 0.0 0.054 13.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial Alpha amylase C-terminal domain Malt_amylase_C PF16657.5 gi|119720359|ref|YP_920854.1| - 0.032 14.4 0.0 0.081 13.1 0.0 1.7 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain TPP_enzyme_C PF02775.21 gi|119720360|ref|YP_920855.1| - 3.5e-29 101.6 0.0 6.3e-29 100.7 0.0 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|119720360|ref|YP_920855.1| - 1.6e-20 73.0 1.3 3.1e-20 72.1 1.3 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|119720361|ref|YP_920856.1| - 4.5e-54 183.6 0.0 6.5e-54 183.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|119720361|ref|YP_920856.1| - 3.4e-24 85.9 0.3 1.3e-23 84.0 0.3 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|119720361|ref|YP_920856.1| - 3.2e-08 33.4 1.1 1.8e-07 30.9 1.1 2.0 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|119720361|ref|YP_920856.1| - 0.016 15.1 0.0 0.045 13.6 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|119720361|ref|YP_920856.1| - 0.055 13.8 0.0 0.15 12.4 0.0 1.8 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Rubredoxin PF00301.20 gi|119720362|ref|YP_920857.1| - 1e-24 86.3 3.2 1.2e-24 86.1 3.2 1.0 1 0 0 1 1 1 1 Rubredoxin TF_Zn_Ribbon PF08271.12 gi|119720362|ref|YP_920857.1| - 3.2e-05 23.4 0.6 0.15 11.6 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-C2H2_3 PF13878.6 gi|119720362|ref|YP_920857.1| - 0.0022 17.8 1.8 0.035 13.9 0.5 2.1 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO zf-RRN7 PF11781.8 gi|119720362|ref|YP_920857.1| - 0.0028 17.3 1.8 0.035 13.8 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|119720362|ref|YP_920857.1| - 0.0074 16.4 3.2 0.089 12.9 3.2 2.1 1 1 0 1 1 1 1 Zinc ribbon domain PHD_4 PF16866.5 gi|119720362|ref|YP_920857.1| - 0.0085 16.2 0.7 0.012 15.6 0.7 1.3 1 1 0 1 1 1 1 PHD-finger zf-Sec23_Sec24 PF04810.15 gi|119720362|ref|YP_920857.1| - 0.0095 16.0 0.2 0.53 10.4 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger Rubredoxin_2 PF18073.1 gi|119720362|ref|YP_920857.1| - 0.0098 15.6 4.8 0.48 10.2 0.4 2.1 2 0 0 2 2 2 2 Rubredoxin metal binding domain Vps36-NZF-N PF16988.5 gi|119720362|ref|YP_920857.1| - 0.01 15.2 0.1 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zinc_ribbon_10 PF10058.9 gi|119720362|ref|YP_920857.1| - 0.013 15.3 2.3 3 7.6 0.9 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein OrfB_Zn_ribbon PF07282.11 gi|119720362|ref|YP_920857.1| - 0.013 15.4 0.2 5.3 7.0 0.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|119720362|ref|YP_920857.1| - 0.027 14.4 0.8 6.6 6.8 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal Desulfoferrod_N PF06397.12 gi|119720362|ref|YP_920857.1| - 0.028 14.0 3.8 0.17 11.6 1.9 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF35_N PF12172.8 gi|119720362|ref|YP_920857.1| - 0.031 14.2 1.3 2.4 8.1 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_SprT PF17283.2 gi|119720362|ref|YP_920857.1| - 0.039 13.9 6.7 0.6 10.1 1.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|119720362|ref|YP_920857.1| - 0.039 14.0 0.2 9.3 6.4 0.1 2.1 2 0 0 2 2 2 0 Double zinc ribbon Zn-C2H2_12 PF18112.1 gi|119720362|ref|YP_920857.1| - 0.043 14.3 2.3 8.1 7.0 0.4 2.5 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Prok-RING_1 PF14446.6 gi|119720362|ref|YP_920857.1| - 0.044 13.7 1.1 5.7 6.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-MIZ PF02891.20 gi|119720362|ref|YP_920857.1| - 0.046 13.5 1.4 0.61 9.9 0.3 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-H2C2_2 PF13465.6 gi|119720362|ref|YP_920857.1| - 0.051 14.0 4.2 0.76 10.3 0.9 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-nanos PF05741.13 gi|119720362|ref|YP_920857.1| - 0.062 13.5 2.2 0.79 10.0 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain zf-C2H2_4 PF13894.6 gi|119720362|ref|YP_920857.1| - 0.091 13.7 2.0 6.4 7.9 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger RNA_POL_M_15KD PF02150.16 gi|119720362|ref|YP_920857.1| - 0.096 12.6 3.3 0.57 10.1 1.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_6 PF13912.6 gi|119720362|ref|YP_920857.1| - 0.099 12.7 2.3 3.7 7.7 0.7 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger ADK_lid PF05191.14 gi|119720362|ref|YP_920857.1| - 0.1 12.6 2.7 0.75 9.8 2.6 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-Mss51 PF13824.6 gi|119720362|ref|YP_920857.1| - 0.1 12.7 1.4 4.1 7.6 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.19 gi|119720362|ref|YP_920857.1| - 0.11 12.5 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 gi|119720362|ref|YP_920857.1| - 0.16 11.3 2.7 0.62 9.4 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others C1_2 PF03107.16 gi|119720362|ref|YP_920857.1| - 0.17 12.3 1.7 4.5 7.7 0.5 2.1 2 0 0 2 2 2 0 C1 domain TFIIS_C PF01096.18 gi|119720362|ref|YP_920857.1| - 0.19 11.6 2.4 4.4 7.2 0.6 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2 PF00096.26 gi|119720362|ref|YP_920857.1| - 0.23 12.0 4.0 1.6 9.4 0.6 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type MRNIP PF15749.5 gi|119720362|ref|YP_920857.1| - 0.28 11.9 1.6 4.4 8.1 0.4 2.0 2 0 0 2 2 2 0 MRN-interacting protein zinc_ribbon_2 PF13240.6 gi|119720362|ref|YP_920857.1| - 0.43 10.4 4.1 7.6 6.4 0.2 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Alpha-amylase PF00128.24 gi|119720363|ref|YP_920858.1| - 3.2e-58 197.9 0.0 4.3e-58 197.5 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 gi|119720363|ref|YP_920858.1| - 3.2e-09 37.0 0.0 2.7e-08 34.0 0.0 2.3 2 0 0 2 2 2 1 Alpha amylase, N-terminal ig-like domain DUF3459 PF11941.8 gi|119720363|ref|YP_920858.1| - 1.2e-06 28.8 0.1 2.5e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) AMPK1_CBM PF16561.5 gi|119720363|ref|YP_920858.1| - 0.00072 19.7 0.0 0.0014 18.8 0.0 1.4 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase Malt_amylase_C PF16657.5 gi|119720363|ref|YP_920858.1| - 0.0031 17.6 0.0 0.037 14.1 0.0 2.3 2 0 0 2 2 2 1 Maltogenic Amylase, C-terminal domain NTP_transf_2 PF01909.23 gi|119720364|ref|YP_920859.1| - 6.9e-12 45.5 0.2 1e-11 45.0 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720364|ref|YP_920859.1| - 3.5e-08 33.4 0.0 4.3e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|119720364|ref|YP_920859.1| - 0.0055 16.5 0.1 0.0067 16.2 0.1 1.3 1 1 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.6 gi|119720364|ref|YP_920859.1| - 0.011 16.0 0.0 0.012 15.8 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase beta palm DUF488 PF04343.13 gi|119720365|ref|YP_920860.1| - 7.3e-27 94.4 0.0 8.9e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 BTRD1 PF17660.1 gi|119720365|ref|YP_920860.1| - 0.12 12.2 0.0 0.88 9.4 0.0 2.4 3 0 0 3 3 3 0 Bacterial tandem repeat domain 1 ABC_tran PF00005.27 gi|119720367|ref|YP_920862.1| - 8.5e-27 94.3 0.0 1.3e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720367|ref|YP_920862.1| - 1.4e-12 48.0 0.1 1.2e-05 25.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|119720367|ref|YP_920862.1| - 0.0037 17.7 0.0 0.016 15.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|119720367|ref|YP_920862.1| - 0.02 14.6 0.0 0.05 13.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|119720367|ref|YP_920862.1| - 0.021 14.5 0.0 0.5 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|119720367|ref|YP_920862.1| - 0.021 14.5 0.0 0.027 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119720367|ref|YP_920862.1| - 0.047 13.3 0.1 0.082 12.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|119720367|ref|YP_920862.1| - 0.063 13.8 0.5 0.11 13.0 0.5 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|119720367|ref|YP_920862.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|119720367|ref|YP_920862.1| - 0.12 12.7 0.1 0.16 12.4 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|119720367|ref|YP_920862.1| - 0.19 12.0 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain PadR PF03551.14 gi|119720369|ref|YP_920864.1| - 5.9e-09 35.8 0.2 1.2e-08 34.8 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Mrr_N PF14338.6 gi|119720369|ref|YP_920864.1| - 0.016 15.3 0.0 0.068 13.3 0.1 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_45 PF14947.6 gi|119720369|ref|YP_920864.1| - 0.041 13.9 0.0 0.072 13.1 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|119720369|ref|YP_920864.1| - 0.053 13.3 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF3116 PF11313.8 gi|119720369|ref|YP_920864.1| - 0.053 13.4 0.1 0.081 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) Peptidase_C93 PF06035.11 gi|119720369|ref|YP_920864.1| - 0.14 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP HTH_34 PF13601.6 gi|119720369|ref|YP_920864.1| - 0.15 12.2 0.0 0.36 11.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain Aldolase_II PF00596.21 gi|119720370|ref|YP_920865.1| - 7.6e-51 172.7 0.0 8.8e-51 172.5 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Usp PF00582.26 gi|119720371|ref|YP_920866.1| - 2e-34 119.1 2.8 2.3e-34 118.9 2.8 1.1 1 0 0 1 1 1 1 Universal stress protein family MTTB PF06253.11 gi|119720372|ref|YP_920867.1| - 3.5e-81 272.7 0.0 4.2e-81 272.4 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) B12-binding PF02310.19 gi|119720373|ref|YP_920868.1| - 1.4e-26 92.9 0.5 2.2e-26 92.3 0.5 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|119720373|ref|YP_920868.1| - 9.3e-22 77.3 0.1 1.8e-21 76.3 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain TetR_C_11 PF16859.5 gi|119720373|ref|YP_920868.1| - 0.049 13.9 2.6 4.7 7.6 0.8 3.1 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Glyco_tran_WecB PF03808.13 gi|119720373|ref|YP_920868.1| - 0.053 13.5 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family FGGY_C PF02782.16 gi|119720373|ref|YP_920868.1| - 0.064 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain TnpV PF14198.6 gi|119720373|ref|YP_920868.1| - 0.11 12.5 0.0 11 6.1 0.0 2.8 3 0 0 3 3 3 0 Transposon-encoded protein TnpV Radical_SAM PF04055.21 gi|119720373|ref|YP_920868.1| - 0.12 12.7 0.1 0.22 11.9 0.1 1.4 1 1 0 1 1 1 0 Radical SAM superfamily Putative_PNPOx PF01243.20 gi|119720374|ref|YP_920869.1| - 0.039 14.1 0.0 0.14 12.4 0.0 1.9 2 1 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase Radical_SAM PF04055.21 gi|119720375|ref|YP_920870.1| - 2.9e-14 53.8 0.0 5.3e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily OrfB_Zn_ribbon PF07282.11 gi|119720375|ref|YP_920870.1| - 0.00094 19.1 0.1 0.00094 19.1 0.1 2.5 3 0 0 3 3 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|119720375|ref|YP_920870.1| - 0.0032 17.4 0.1 0.0032 17.4 0.1 3.0 3 0 0 3 3 3 1 Double zinc ribbon zf-ACC PF17848.1 gi|119720375|ref|YP_920870.1| - 0.0046 17.0 1.3 2.2 8.4 0.1 2.7 2 0 0 2 2 2 2 Acetyl-coA carboxylase zinc finger domain zf-C4_Topoisom PF01396.19 gi|119720375|ref|YP_920870.1| - 0.0054 16.5 6.4 0.33 10.8 0.1 3.6 3 0 0 3 3 3 1 Topoisomerase DNA binding C4 zinc finger zf_UBZ PF18439.1 gi|119720375|ref|YP_920870.1| - 0.0063 16.1 4.4 0.26 10.9 0.1 2.9 3 0 0 3 3 3 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|119720375|ref|YP_920870.1| - 0.049 13.1 12.3 0.79 9.2 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain zf-HIT PF04438.16 gi|119720375|ref|YP_920870.1| - 0.059 13.3 0.1 0.059 13.3 0.1 3.4 5 0 0 5 5 3 0 HIT zinc finger Fer4_14 PF13394.6 gi|119720375|ref|YP_920870.1| - 0.18 11.9 0.0 0.36 11.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain DNA_ligase_ZBD PF03119.16 gi|119720375|ref|YP_920870.1| - 0.36 10.9 0.1 0.36 10.9 0.1 3.5 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.6 gi|119720375|ref|YP_920870.1| - 0.37 11.5 0.2 0.37 11.5 0.2 3.3 4 0 0 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.12 gi|119720375|ref|YP_920870.1| - 0.44 10.6 4.0 1.9 8.5 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|119720375|ref|YP_920870.1| - 0.49 9.9 7.4 1 8.9 4.1 2.9 2 1 1 3 3 3 0 TFIIB zinc-binding CpXC PF14353.6 gi|119720375|ref|YP_920870.1| - 0.84 9.7 4.0 3.6 7.6 0.0 3.0 3 0 0 3 3 3 0 CpXC protein zf-NADH-PPase PF09297.11 gi|119720375|ref|YP_920870.1| - 1.2 8.8 10.6 3.1 7.5 0.2 3.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119720375|ref|YP_920870.1| - 1.2 8.9 13.1 2.1 8.2 0.6 3.5 3 0 0 3 3 3 0 zinc-ribbon domain DUF2688 PF10892.8 gi|119720375|ref|YP_920870.1| - 2.3 7.8 8.1 0.77 9.3 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2688) Zn-ribbon_8 PF09723.10 gi|119720375|ref|YP_920870.1| - 3.8 7.7 13.3 0.64 10.2 0.2 3.6 4 0 0 4 4 3 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|119720375|ref|YP_920870.1| - 8.7 5.9 9.6 5.3 6.6 0.3 2.9 3 0 0 3 3 3 0 Mu-like prophage protein Com Zn_ribbon_SprT PF17283.2 gi|119720375|ref|YP_920870.1| - 9.1 6.3 14.4 8.5 6.4 0.0 3.7 4 0 0 4 4 3 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|119720375|ref|YP_920870.1| - 9.7 6.3 7.2 2.1 8.4 0.1 2.8 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF364 PF04016.12 gi|119720376|ref|YP_920871.1| - 8.1e-40 135.8 0.0 1.1e-39 135.3 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|119720376|ref|YP_920871.1| - 5.5e-20 71.4 0.2 1.2e-19 70.3 0.2 1.6 1 0 0 1 1 1 1 Putative heavy-metal chelation PIN PF01850.21 gi|119720377|ref|YP_920872.1| - 1.1e-16 61.4 0.2 1.4e-16 61.1 0.2 1.1 1 0 0 1 1 1 1 PIN domain Phage-MuB_C PF09077.11 gi|119720377|ref|YP_920872.1| - 0.069 13.0 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Mu B transposition protein, C terminal DUF3349 PF11829.8 gi|119720378|ref|YP_920873.1| - 0.058 14.2 0.0 0.073 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) ABC2_membrane PF01061.24 gi|119720379|ref|YP_920874.1| - 6.4e-12 45.3 15.2 8.6e-12 44.9 15.2 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|119720379|ref|YP_920874.1| - 9e-08 31.6 7.4 9e-08 31.6 7.4 1.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|119720380|ref|YP_920875.1| - 1.2e-25 90.7 0.0 1.6e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720380|ref|YP_920875.1| - 3.5e-13 50.1 0.1 1.3e-08 35.0 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|119720380|ref|YP_920875.1| - 8e-05 22.6 0.0 0.0002 21.4 0.0 1.6 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|119720380|ref|YP_920875.1| - 0.0003 21.2 0.1 0.00046 20.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|119720380|ref|YP_920875.1| - 0.0035 16.7 0.0 0.0062 15.8 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin TsaE PF02367.17 gi|119720380|ref|YP_920875.1| - 0.0036 17.3 0.0 0.0058 16.6 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|119720380|ref|YP_920875.1| - 0.0038 17.5 0.1 0.018 15.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|119720380|ref|YP_920875.1| - 0.012 15.1 0.0 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|119720380|ref|YP_920875.1| - 0.013 15.1 0.1 0.033 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|119720380|ref|YP_920875.1| - 0.021 14.3 0.0 2 7.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119720380|ref|YP_920875.1| - 0.023 15.2 0.0 0.034 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|119720380|ref|YP_920875.1| - 0.029 14.4 0.2 4.3 7.3 0.1 2.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|119720380|ref|YP_920875.1| - 0.044 14.0 0.0 0.53 10.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|119720380|ref|YP_920875.1| - 0.053 13.9 0.0 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|119720380|ref|YP_920875.1| - 0.054 13.8 0.3 0.12 12.6 0.3 1.8 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|119720380|ref|YP_920875.1| - 0.054 13.3 0.1 0.096 12.5 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 gi|119720380|ref|YP_920875.1| - 0.077 12.7 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119720380|ref|YP_920875.1| - 0.096 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|119720380|ref|YP_920875.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|119720380|ref|YP_920875.1| - 0.19 12.0 0.1 0.51 10.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|119720380|ref|YP_920875.1| - 0.2 11.3 0.0 3.9 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain PIN PF01850.21 gi|119720382|ref|YP_920877.1| - 9.1e-14 52.0 0.0 1.2e-13 51.6 0.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|119720382|ref|YP_920877.1| - 0.00085 20.1 0.1 0.0012 19.6 0.0 1.5 1 1 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|119720383|ref|YP_920878.1| - 1.1e-10 41.1 2.0 1.1e-10 41.1 2.0 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|119720383|ref|YP_920878.1| - 0.027 14.9 0.0 0.028 14.9 0.0 1.2 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin AbrB-like PF14250.6 gi|119720383|ref|YP_920878.1| - 0.048 13.8 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 AbrB-like transcriptional regulator SymE_toxin PF08845.10 gi|119720383|ref|YP_920878.1| - 0.14 12.3 0.7 0.27 11.3 0.1 1.7 2 0 0 2 2 2 0 Toxin SymE, type I toxin-antitoxin system KdpA PF03814.15 gi|119720384|ref|YP_920879.1| - 2.2e-119 399.1 28.4 2e-116 389.4 28.4 2.1 1 1 0 1 1 1 1 Potassium-transporting ATPase A subunit E1-E2_ATPase PF00122.20 gi|119720385|ref|YP_920880.1| - 3.1e-40 137.6 5.2 6.2e-40 136.6 0.6 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|119720385|ref|YP_920880.1| - 2.5e-32 112.9 0.9 5.4e-32 111.8 0.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|119720385|ref|YP_920880.1| - 9.6e-10 38.6 0.9 2e-05 24.5 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|119720385|ref|YP_920880.1| - 2.1e-05 25.0 0.4 0.00071 20.0 0.1 3.3 2 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydantoinase_A PF01968.18 gi|119720385|ref|YP_920880.1| - 0.016 14.5 0.3 0.038 13.3 0.3 1.5 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase Hydrolase_6 PF13344.6 gi|119720385|ref|YP_920880.1| - 0.025 14.7 0.0 0.085 13.0 0.0 1.9 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.18 gi|119720385|ref|YP_920880.1| - 0.046 13.7 0.1 0.26 11.3 0.0 2.2 1 1 1 2 2 2 0 DNA photolyase AroM PF07302.11 gi|119720385|ref|YP_920880.1| - 0.083 12.3 0.2 0.2 11.0 0.2 1.6 1 0 0 1 1 1 0 AroM protein HAD_2 PF13419.6 gi|119720385|ref|YP_920880.1| - 0.12 12.4 0.1 0.34 11.0 0.1 1.7 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Aminotran_4 PF01063.19 gi|119720385|ref|YP_920880.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Amino-transferase class IV KdpC PF02669.15 gi|119720386|ref|YP_920881.1| - 1.2e-11 44.8 0.1 9.5e-08 32.1 0.0 2.1 2 0 0 2 2 2 2 K+-transporting ATPase, c chain GATase_4 PF13230.6 gi|119720387|ref|YP_920882.1| - 2.4e-09 36.5 0.0 3.9e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|119720387|ref|YP_920882.1| - 0.0002 21.6 0.0 0.00029 21.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain LPAM_1 PF08139.12 gi|119720388|ref|YP_920883.1| - 0.055 14.0 2.5 0.055 14.0 2.5 2.9 3 0 0 3 3 3 0 Prokaryotic membrane lipoprotein lipid attachment site CorA PF01544.18 gi|119720389|ref|YP_920884.1| - 2.2e-41 142.1 0.1 1.6e-40 139.2 0.1 1.9 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF2730 PF10805.8 gi|119720389|ref|YP_920884.1| - 0.059 13.5 0.0 1.8 8.7 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) Antimicrobial10 PF08105.11 gi|119720389|ref|YP_920884.1| - 0.87 9.7 2.1 3.4 7.8 0.0 2.4 2 1 1 3 3 3 0 Metchnikowin family SBP_bac_6 PF13343.6 gi|119720390|ref|YP_920885.1| - 9e-34 117.0 1.0 4.4e-33 114.7 0.4 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|119720390|ref|YP_920885.1| - 1.1e-24 87.7 0.2 1.1e-24 87.7 0.2 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119720390|ref|YP_920885.1| - 6.3e-22 78.9 3.2 6.3e-22 78.9 3.2 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119720390|ref|YP_920885.1| - 2.9e-19 69.7 0.0 1.7e-18 67.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|119720391|ref|YP_920886.1| - 5e-38 130.7 0.0 8.2e-38 130.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|119720391|ref|YP_920886.1| - 1.5e-12 47.6 1.5 2.2e-07 31.1 0.0 2.7 2 0 0 2 2 2 2 TOBE domain TOBE_2 PF08402.10 gi|119720391|ref|YP_920886.1| - 1.6e-12 47.4 0.1 6.1e-12 45.5 0.1 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|119720391|ref|YP_920886.1| - 8.2e-10 39.0 0.1 0.00042 20.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|119720391|ref|YP_920886.1| - 0.001 19.5 0.0 0.0015 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain TOBE_3 PF12857.7 gi|119720391|ref|YP_920886.1| - 0.0011 18.9 1.0 0.01 15.7 0.2 2.5 2 0 0 2 2 2 1 TOBE-like domain Rad17 PF03215.15 gi|119720391|ref|YP_920886.1| - 0.0014 18.6 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain SMC_N PF02463.19 gi|119720391|ref|YP_920886.1| - 0.0043 16.5 0.1 0.14 11.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|119720391|ref|YP_920886.1| - 0.01 16.3 0.1 0.051 14.0 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|119720391|ref|YP_920886.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|119720391|ref|YP_920886.1| - 0.015 15.3 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 gi|119720391|ref|YP_920886.1| - 0.024 13.8 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_29 PF13555.6 gi|119720391|ref|YP_920886.1| - 0.028 14.1 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|119720391|ref|YP_920886.1| - 0.029 13.7 0.0 0.072 12.5 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|119720391|ref|YP_920886.1| - 0.033 13.9 0.0 0.064 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119720391|ref|YP_920886.1| - 0.034 14.1 0.3 0.07 13.0 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|119720391|ref|YP_920886.1| - 0.039 14.0 0.0 0.091 12.8 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.6 gi|119720391|ref|YP_920886.1| - 0.04 14.4 0.0 0.1 13.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|119720391|ref|YP_920886.1| - 0.045 13.3 0.0 0.098 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain MIT_C PF16565.5 gi|119720391|ref|YP_920886.1| - 0.049 13.6 0.0 0.077 13.0 0.0 1.2 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_18 PF13238.6 gi|119720391|ref|YP_920886.1| - 0.062 13.8 0.0 0.25 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain MotA_activ PF09114.10 gi|119720391|ref|YP_920886.1| - 0.068 13.3 0.2 1 9.5 0.1 2.2 1 1 1 2 2 2 0 Transcription factor MotA, activation domain ATPase_2 PF01637.18 gi|119720391|ref|YP_920886.1| - 0.09 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|119720391|ref|YP_920886.1| - 0.13 12.5 0.3 0.33 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|119720391|ref|YP_920886.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.9 gi|119720391|ref|YP_920886.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|119720391|ref|YP_920886.1| - 0.17 12.1 0.0 0.45 10.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain BPD_transp_1 PF00528.22 gi|119720392|ref|YP_920887.1| - 2.3e-26 92.7 42.1 2e-14 53.7 18.1 3.4 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component BPL_LplA_LipB PF03099.19 gi|119720393|ref|YP_920888.1| - 3.2e-15 56.2 0.1 1.3e-14 54.3 0.0 1.9 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|119720393|ref|YP_920888.1| - 3.3e-13 49.4 0.1 6.8e-13 48.4 0.1 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|119720393|ref|YP_920888.1| - 1.7e-08 34.2 3.5 3.3e-08 33.3 3.5 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain MarR_2 PF12802.7 gi|119720393|ref|YP_920888.1| - 2.2e-07 30.7 0.6 5.5e-07 29.4 0.6 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|119720393|ref|YP_920888.1| - 5.2e-05 23.0 0.4 0.00012 21.8 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|119720393|ref|YP_920888.1| - 0.00021 21.7 0.2 0.00038 20.9 0.2 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain AbiEi_4 PF13338.6 gi|119720393|ref|YP_920888.1| - 0.00031 20.8 0.2 0.00086 19.4 0.2 1.8 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin Fe_dep_repress PF01325.19 gi|119720393|ref|YP_920888.1| - 0.0012 19.0 0.0 0.0025 18.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|119720393|ref|YP_920888.1| - 0.013 15.2 0.9 0.025 14.2 0.9 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|119720393|ref|YP_920888.1| - 0.024 14.2 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|119720393|ref|YP_920888.1| - 0.053 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|119720393|ref|YP_920888.1| - 0.061 13.2 0.1 0.18 11.7 0.1 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|119720393|ref|YP_920888.1| - 0.11 12.3 0.0 0.4 10.5 0.0 1.9 1 0 0 1 1 1 0 HTH DNA binding domain Put_DNA-bind_N PF06971.13 gi|119720393|ref|YP_920888.1| - 0.11 12.5 0.1 6.1 6.9 0.0 2.8 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus FaeA PF04703.12 gi|119720393|ref|YP_920888.1| - 0.14 12.6 0.4 3 8.3 0.2 2.4 2 0 0 2 2 2 0 FaeA-like protein DUF697 PF05128.12 gi|119720394|ref|YP_920889.1| - 1.2 8.8 6.9 0.64 9.7 0.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF697) ABC_tran PF00005.27 gi|119720395|ref|YP_920890.1| - 2.4e-38 131.8 0.0 1.4e-19 71.0 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|119720395|ref|YP_920890.1| - 3e-24 86.4 8.2 3.6e-09 36.8 0.1 4.1 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119720395|ref|YP_920890.1| - 4.8e-10 39.8 0.3 0.0013 19.1 0.1 3.2 2 2 0 2 2 2 2 AAA domain T2SSE PF00437.20 gi|119720395|ref|YP_920890.1| - 1.4e-09 37.4 0.2 0.00031 19.9 0.2 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_29 PF13555.6 gi|119720395|ref|YP_920890.1| - 8.1e-09 35.1 1.2 0.0024 17.6 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119720395|ref|YP_920890.1| - 1.8e-08 35.1 0.0 0.0046 17.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|119720395|ref|YP_920890.1| - 1.1e-07 32.3 2.3 0.0049 17.3 0.4 2.6 2 1 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 gi|119720395|ref|YP_920890.1| - 1.1e-06 28.7 0.9 0.02 14.8 0.0 2.7 3 0 0 3 3 2 2 NACHT domain SMC_N PF02463.19 gi|119720395|ref|YP_920890.1| - 1.1e-06 28.2 0.0 0.72 9.3 0.0 3.6 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|119720395|ref|YP_920890.1| - 1.4e-06 28.1 5.4 0.0039 16.9 0.2 3.0 3 2 0 3 3 2 2 AAA domain AAA_25 PF13481.6 gi|119720395|ref|YP_920890.1| - 6.4e-06 25.9 0.4 0.049 13.2 0.1 3.1 3 0 0 3 3 3 2 AAA domain ATPase_2 PF01637.18 gi|119720395|ref|YP_920890.1| - 2.2e-05 24.5 0.2 0.034 14.1 0.0 2.2 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|119720395|ref|YP_920890.1| - 2.6e-05 24.8 2.3 0.054 14.0 0.1 2.6 2 1 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|119720395|ref|YP_920890.1| - 5.6e-05 23.1 3.9 0.092 12.7 0.3 2.4 2 0 0 2 2 2 2 NTPase AAA_33 PF13671.6 gi|119720395|ref|YP_920890.1| - 6.7e-05 23.1 0.0 0.35 11.0 0.2 2.8 2 2 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|119720395|ref|YP_920890.1| - 7.3e-05 22.8 0.2 0.13 12.2 0.0 2.2 2 0 0 2 2 2 2 Rad17 P-loop domain AAA PF00004.29 gi|119720395|ref|YP_920890.1| - 0.00014 22.3 0.9 0.74 10.2 0.2 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|119720395|ref|YP_920890.1| - 0.00021 21.1 0.6 2.7 7.7 0.1 3.2 3 0 0 3 3 3 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|119720395|ref|YP_920890.1| - 0.00024 21.0 1.3 0.085 12.8 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_28 PF13521.6 gi|119720395|ref|YP_920890.1| - 0.00028 21.2 4.6 0.28 11.4 0.2 2.7 3 0 0 3 3 2 2 AAA domain TsaE PF02367.17 gi|119720395|ref|YP_920890.1| - 0.00028 20.9 0.3 0.73 9.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|119720395|ref|YP_920890.1| - 0.0004 20.0 5.8 0.064 12.8 0.8 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|119720395|ref|YP_920890.1| - 0.00044 19.7 0.1 0.3 10.4 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|119720395|ref|YP_920890.1| - 0.00061 19.6 0.0 0.26 11.0 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain RNA_helicase PF00910.22 gi|119720395|ref|YP_920890.1| - 0.001 19.4 0.0 1.5 9.2 0.0 2.2 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.6 gi|119720395|ref|YP_920890.1| - 0.0011 19.0 0.6 1.1 9.3 0.1 2.8 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.6 gi|119720395|ref|YP_920890.1| - 0.0013 19.1 3.2 1.1 9.5 0.2 3.0 3 0 0 3 3 2 2 AAA domain dNK PF01712.19 gi|119720395|ref|YP_920890.1| - 0.0017 18.2 1.2 0.96 9.3 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase PIF1 PF05970.14 gi|119720395|ref|YP_920890.1| - 0.0018 17.5 0.1 1.7 7.7 0.1 2.1 2 0 0 2 2 2 2 PIF1-like helicase ATP_bind_1 PF03029.17 gi|119720395|ref|YP_920890.1| - 0.0025 17.7 0.3 1.2 8.9 0.1 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|119720395|ref|YP_920890.1| - 0.0044 16.9 1.5 0.93 9.4 0.2 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|119720395|ref|YP_920890.1| - 0.0051 16.0 0.6 1.3 8.1 0.1 2.2 2 0 0 2 2 2 1 NB-ARC domain FtsK_SpoIIIE PF01580.18 gi|119720395|ref|YP_920890.1| - 0.007 15.7 0.3 2 7.7 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|119720395|ref|YP_920890.1| - 0.0071 16.1 1.5 2 8.1 0.1 2.3 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|119720395|ref|YP_920890.1| - 0.0086 15.8 0.5 2.2 8.0 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SbcCD_C PF13558.6 gi|119720395|ref|YP_920890.1| - 0.015 15.5 0.0 5.1 7.4 0.0 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|119720395|ref|YP_920890.1| - 0.015 15.3 1.2 2.9 7.9 0.1 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|119720395|ref|YP_920890.1| - 0.021 14.9 1.6 3.7 7.7 0.2 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|119720395|ref|YP_920890.1| - 0.021 14.5 3.8 1.3 8.6 0.1 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|119720395|ref|YP_920890.1| - 0.033 13.5 0.5 6.8 5.9 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_7 PF12775.7 gi|119720395|ref|YP_920890.1| - 0.033 13.7 0.5 4.2 6.8 0.1 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|119720395|ref|YP_920890.1| - 0.035 13.9 0.2 9 6.0 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Pox_A32 PF04665.12 gi|119720395|ref|YP_920890.1| - 0.04 13.4 0.2 8.2 5.8 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein DLIC PF05783.11 gi|119720395|ref|YP_920890.1| - 0.044 12.6 1.1 0.79 8.5 0.1 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) DEAD PF00270.29 gi|119720395|ref|YP_920890.1| - 0.046 13.5 1.5 1.8 8.3 0.3 2.5 2 1 0 2 2 2 0 DEAD/DEAH box helicase PhoH PF02562.16 gi|119720395|ref|YP_920890.1| - 0.048 13.1 1.0 1.8 7.9 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein KAP_NTPase PF07693.14 gi|119720395|ref|YP_920890.1| - 0.05 12.8 0.0 0.89 8.7 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain ATPase PF06745.13 gi|119720395|ref|YP_920890.1| - 0.061 12.7 1.1 4.3 6.6 0.1 2.4 3 0 0 3 3 2 0 KaiC AAA_27 PF13514.6 gi|119720395|ref|YP_920890.1| - 0.066 12.8 0.2 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|119720395|ref|YP_920890.1| - 0.071 11.9 2.6 5.1 5.8 0.1 2.8 3 0 0 3 3 3 0 Predicted ATPase of the ABC class PRK PF00485.18 gi|119720395|ref|YP_920890.1| - 0.085 12.6 0.5 5.3 6.7 0.0 2.4 3 0 0 3 3 2 0 Phosphoribulokinase / Uridine kinase family DUF1876 PF08962.11 gi|119720395|ref|YP_920890.1| - 0.11 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1876) DAP3 PF10236.9 gi|119720395|ref|YP_920890.1| - 0.12 11.6 0.1 13 4.8 0.1 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DUF3584 PF12128.8 gi|119720395|ref|YP_920890.1| - 0.14 9.7 1.5 0.33 8.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Dynamin_N PF00350.23 gi|119720395|ref|YP_920890.1| - 0.19 11.8 0.6 18 5.3 0.1 2.3 2 0 0 2 2 2 0 Dynamin family Thymidylate_kin PF02223.17 gi|119720395|ref|YP_920890.1| - 0.21 11.2 0.4 5.1 6.7 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_13 PF13166.6 gi|119720395|ref|YP_920890.1| - 0.26 9.9 1.1 1.1 7.8 0.2 1.9 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|119720395|ref|YP_920890.1| - 0.28 10.9 0.9 16 5.2 0.1 2.9 3 0 0 3 3 3 0 Cytidylate kinase TrwB_AAD_bind PF10412.9 gi|119720395|ref|YP_920890.1| - 0.3 9.9 1.1 9.5 5.0 0.1 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.6 gi|119720395|ref|YP_920890.1| - 0.49 10.8 1.9 17 5.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|119720395|ref|YP_920890.1| - 0.53 10.3 7.0 8.1 6.5 0.9 2.6 3 0 0 3 3 2 0 Helicase HerA, central domain Viral_helicase1 PF01443.18 gi|119720395|ref|YP_920890.1| - 0.66 9.7 4.1 8.8 6.0 0.7 2.6 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|119720395|ref|YP_920890.1| - 1.5 8.0 3.9 15 4.7 0.7 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) CbiA PF01656.23 gi|119720395|ref|YP_920890.1| - 7.3 6.7 5.6 38 4.3 0.5 2.5 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain BioY PF02632.14 gi|119720396|ref|YP_920891.1| - 2e-27 95.9 17.4 4.1e-27 94.9 17.4 1.5 1 0 0 1 1 1 1 BioY family MS_channel PF00924.18 gi|119720397|ref|YP_920892.1| - 1.8e-18 66.9 8.6 7.7e-18 64.8 8.7 2.0 1 1 0 1 1 1 1 Mechanosensitive ion channel FtsK_4TM PF13491.6 gi|119720397|ref|YP_920892.1| - 4 7.1 14.6 0.4 10.4 9.4 1.8 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE DUF4396 PF14342.6 gi|119720397|ref|YP_920892.1| - 4.1 7.8 11.4 3.8 7.9 0.8 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4396) Lactamase_B_2 PF12706.7 gi|119720398|ref|YP_920893.1| - 2.7e-24 85.8 0.1 3.4e-24 85.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119720398|ref|YP_920893.1| - 6.2e-21 75.0 0.0 7.9e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119720398|ref|YP_920893.1| - 2.6e-12 47.2 2.2 6.6e-12 45.8 2.2 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Glyco_hydro_3 PF00933.21 gi|119720399|ref|YP_920894.1| - 8.6e-60 202.8 0.0 1.3e-59 202.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|119720399|ref|YP_920894.1| - 1.2e-47 162.5 0.0 3.2e-47 161.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|119720399|ref|YP_920894.1| - 1.8e-24 85.6 0.2 4.2e-24 84.5 0.2 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain MazE_antitoxin PF04014.18 gi|119720400|ref|YP_920895.1| - 1.1e-08 34.7 0.4 2e-08 34.0 0.4 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|119720400|ref|YP_920895.1| - 0.011 15.7 0.1 0.019 15.0 0.1 1.7 1 1 0 1 1 1 0 MraZ protein, putative antitoxin-like PaREP1 PF05942.11 gi|119720401|ref|YP_920896.1| - 0.0049 16.8 1.9 0.0062 16.5 1.9 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Peptidase_C69 PF03577.15 gi|119720402|ref|YP_920897.1| - 1.2e-13 50.7 0.1 3.5e-13 49.2 0.1 1.7 1 1 0 1 1 1 1 Peptidase family C69 AAT PF03417.16 gi|119720402|ref|YP_920897.1| - 0.00014 21.7 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase Beta_propel PF09826.9 gi|119720403|ref|YP_920898.1| - 4.9e-113 378.7 0.0 5.7e-113 378.5 0.0 1.0 1 0 0 1 1 1 1 Beta propeller domain PsbN PF02468.15 gi|119720403|ref|YP_920898.1| - 0.055 13.3 0.1 0.15 12.0 0.1 1.7 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) DUF2225 PF09986.9 gi|119720403|ref|YP_920898.1| - 0.09 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) HTH_5 PF01022.20 gi|119720404|ref|YP_920899.1| - 2e-12 46.8 0.1 3.6e-12 45.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|119720404|ref|YP_920899.1| - 4.9e-12 45.2 0.0 8.8e-12 44.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|119720404|ref|YP_920899.1| - 2e-11 43.5 0.8 1.4e-10 40.7 0.2 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|119720404|ref|YP_920899.1| - 2.3e-10 40.2 0.1 3.7e-10 39.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119720404|ref|YP_920899.1| - 2e-09 37.2 0.0 4.1e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|119720404|ref|YP_920899.1| - 1.6e-08 34.5 0.1 2.6e-08 33.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|119720404|ref|YP_920899.1| - 1.3e-05 25.1 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|119720404|ref|YP_920899.1| - 2.7e-05 23.9 1.2 5.2e-05 23.0 0.0 2.1 3 0 0 3 3 1 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.6 gi|119720404|ref|YP_920899.1| - 0.0001 22.0 0.0 0.00022 20.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|119720404|ref|YP_920899.1| - 0.00014 21.8 0.0 0.00025 21.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|119720404|ref|YP_920899.1| - 0.00023 21.2 0.0 0.00066 19.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|119720404|ref|YP_920899.1| - 0.00029 20.5 0.0 0.0029 17.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|119720404|ref|YP_920899.1| - 0.00034 20.8 0.0 0.00062 19.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|119720404|ref|YP_920899.1| - 0.00076 19.2 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain DUF4423 PF14394.6 gi|119720404|ref|YP_920899.1| - 0.00081 19.1 0.0 0.00098 18.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|119720404|ref|YP_920899.1| - 0.0011 18.7 0.0 0.0028 17.4 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_psq PF05225.16 gi|119720404|ref|YP_920899.1| - 0.0014 18.3 0.0 0.0023 17.6 0.0 1.3 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_30 PF13556.6 gi|119720404|ref|YP_920899.1| - 0.0014 18.4 0.0 0.004 16.9 0.0 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.6 gi|119720404|ref|YP_920899.1| - 0.0018 18.3 0.1 0.0084 16.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix Rrf2 PF02082.20 gi|119720404|ref|YP_920899.1| - 0.0024 18.2 0.0 0.0038 17.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|119720404|ref|YP_920899.1| - 0.0034 17.1 0.0 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|119720404|ref|YP_920899.1| - 0.0034 17.5 0.0 0.0056 16.8 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DprA_WH PF17782.1 gi|119720404|ref|YP_920899.1| - 0.0065 16.6 0.1 0.0065 16.6 0.1 1.9 3 0 0 3 3 1 1 DprA winged helix domain HTH_11 PF08279.12 gi|119720404|ref|YP_920899.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain RP-C PF03428.13 gi|119720404|ref|YP_920899.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_23 PF13384.6 gi|119720404|ref|YP_920899.1| - 0.017 14.9 0.0 0.041 13.7 0.0 1.7 2 0 0 2 2 1 0 Homeodomain-like domain HTH_27 PF13463.6 gi|119720404|ref|YP_920899.1| - 0.019 15.4 0.0 0.038 14.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|119720404|ref|YP_920899.1| - 0.028 14.4 0.0 0.16 12.0 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|119720404|ref|YP_920899.1| - 0.034 14.6 0.0 0.051 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|119720404|ref|YP_920899.1| - 0.048 13.8 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_1 PF00126.27 gi|119720404|ref|YP_920899.1| - 0.049 13.6 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family CENP-B_N PF04218.13 gi|119720404|ref|YP_920899.1| - 0.051 13.2 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain DUF742 PF05331.11 gi|119720404|ref|YP_920899.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.4 2 0 0 2 2 1 0 Protein of unknown function (DUF742) GerE PF00196.19 gi|119720404|ref|YP_920899.1| - 0.067 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family GntR PF00392.21 gi|119720404|ref|YP_920899.1| - 0.068 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MerR PF00376.23 gi|119720404|ref|YP_920899.1| - 0.088 12.6 0.0 0.25 11.2 0.0 1.8 1 1 0 1 1 1 0 MerR family regulatory protein Penicillinase_R PF03965.16 gi|119720404|ref|YP_920899.1| - 0.099 13.0 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_9 PF08221.11 gi|119720404|ref|YP_920899.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF2250 PF10007.9 gi|119720404|ref|YP_920899.1| - 0.14 12.3 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Cdc6_C PF09079.11 gi|119720404|ref|YP_920899.1| - 0.14 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain TnsD PF15978.5 gi|119720404|ref|YP_920899.1| - 0.27 10.2 0.0 0.32 9.9 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D PaREP1 PF05942.11 gi|119720406|ref|YP_920901.1| - 5.6e-24 84.3 3.6 9e-24 83.6 3.6 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|119720406|ref|YP_920901.1| - 0.00015 21.9 2.8 0.00031 20.9 2.8 1.5 1 1 0 1 1 1 1 HEPN domain DUF131 PF01998.17 gi|119720407|ref|YP_920902.1| - 4e-15 55.2 3.2 4e-15 55.2 3.2 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 Ycf9 PF01737.17 gi|119720407|ref|YP_920902.1| - 0.038 13.9 1.1 0.038 13.9 1.1 2.4 2 1 0 2 2 2 0 YCF9 Fig1 PF12351.8 gi|119720407|ref|YP_920902.1| - 1.1 9.1 5.0 2.1 8.2 5.0 1.5 1 1 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF131 PF01998.17 gi|119720408|ref|YP_920903.1| - 0.0014 18.3 2.1 0.0014 18.3 2.1 1.5 2 0 0 2 2 2 1 Protein of unknown function DUF131 GHMP_kinases_N PF00288.26 gi|119720408|ref|YP_920903.1| - 0.03 14.5 3.5 0.03 14.5 3.5 2.2 2 0 0 2 2 2 0 GHMP kinases N terminal domain Lipase3_N PF03893.16 gi|119720408|ref|YP_920903.1| - 4.8 7.3 6.4 6.1 6.9 1.4 2.2 2 0 0 2 2 2 0 Lipase 3 N-terminal region DUF2095 PF09868.9 gi|119720409|ref|YP_920904.1| - 0.075 13.0 1.0 0.2 11.7 0.6 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2095) Cyt_bd_oxida_I PF01654.17 gi|119720410|ref|YP_920905.1| - 2.2e-19 69.4 19.0 2.2e-19 69.4 19.0 2.0 1 1 1 2 2 2 2 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_I PF01654.17 gi|119720411|ref|YP_920906.1| - 1.5e-65 221.4 30.1 4.6e-65 219.9 30.1 1.7 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I UxaE PF16257.5 gi|119720412|ref|YP_920907.1| - 8.7e-27 93.9 0.0 1.1e-26 93.5 0.0 1.1 1 0 0 1 1 1 1 tagaturonate epimerase F_bP_aldolase PF01116.20 gi|119720412|ref|YP_920907.1| - 0.06 12.8 0.0 2.8 7.3 0.0 2.2 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-II HycI PF01750.18 gi|119720413|ref|YP_920908.1| - 1.3e-08 34.7 0.0 1.8e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease HTH_24 PF13412.6 gi|119720414|ref|YP_920909.1| - 2.5e-10 39.7 0.0 4.2e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|119720414|ref|YP_920909.1| - 2.5e-07 30.5 0.0 5.6e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|119720414|ref|YP_920909.1| - 3.6e-05 23.9 0.0 0.00023 21.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|119720414|ref|YP_920909.1| - 5.7e-05 22.8 0.0 0.00017 21.3 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|119720414|ref|YP_920909.1| - 0.00011 22.2 0.0 0.00032 20.7 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|119720414|ref|YP_920909.1| - 0.00016 21.5 0.9 0.00047 20.0 0.1 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|119720414|ref|YP_920909.1| - 0.00052 19.8 0.0 0.00092 19.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|119720414|ref|YP_920909.1| - 0.00098 19.0 0.0 0.0024 17.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|119720414|ref|YP_920909.1| - 0.0013 18.5 0.0 0.0033 17.2 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain FaeA PF04703.12 gi|119720414|ref|YP_920909.1| - 0.0023 18.3 0.2 0.0073 16.6 0.1 1.8 2 0 0 2 2 2 1 FaeA-like protein DprA_WH PF17782.1 gi|119720414|ref|YP_920909.1| - 0.022 14.9 0.2 0.12 12.5 0.0 2.3 2 1 0 2 2 2 0 DprA winged helix domain DUF2250 PF10007.9 gi|119720414|ref|YP_920909.1| - 0.037 14.1 0.0 0.071 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.6 gi|119720414|ref|YP_920909.1| - 0.039 13.7 1.0 0.1 12.4 0.0 2.2 3 0 0 3 3 3 0 Homeodomain-like domain 7TMR-DISM_7TM PF07695.11 gi|119720415|ref|YP_920910.1| - 0.025 14.5 13.0 0.03 14.2 13.0 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling Phage_holin_5_2 PF16079.5 gi|119720415|ref|YP_920910.1| - 0.083 13.2 1.2 9.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V DUF2070 PF09843.9 gi|119720415|ref|YP_920910.1| - 1.8 6.7 12.8 1.9 6.7 12.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4349 PF14257.6 gi|119720415|ref|YP_920910.1| - 2.2 7.7 6.3 0.46 9.9 2.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) Glyco_hydro_4 PF02056.16 gi|119720416|ref|YP_920911.1| - 6.8e-46 156.1 0.0 9.5e-46 155.6 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|119720416|ref|YP_920911.1| - 4.4e-40 138.0 0.0 7.7e-40 137.2 0.0 1.4 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|119720416|ref|YP_920911.1| - 0.0013 18.8 0.0 0.033 14.3 0.0 2.2 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|119720416|ref|YP_920911.1| - 0.013 14.8 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain OTCace PF00185.24 gi|119720416|ref|YP_920911.1| - 0.082 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AA_permease_2 PF13520.6 gi|119720418|ref|YP_920913.1| - 3.8e-46 157.8 29.7 4.8e-46 157.5 29.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|119720418|ref|YP_920913.1| - 4.2e-43 147.7 29.9 6.7e-43 147.0 29.9 1.3 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|119720418|ref|YP_920913.1| - 1e-13 50.9 6.0 1e-13 50.9 6.0 1.5 2 0 0 2 2 2 1 Spore germination protein DUF996 PF06195.13 gi|119720419|ref|YP_920914.1| - 0.0045 17.3 15.1 0.011 16.0 6.1 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF996) Yip1 PF04893.17 gi|119720419|ref|YP_920914.1| - 0.4 10.4 37.0 0.39 10.4 22.3 2.1 1 1 1 2 2 2 0 Yip1 domain ADH_N PF08240.12 gi|119720421|ref|YP_920916.1| - 3.8e-27 94.3 0.0 6.1e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|119720421|ref|YP_920916.1| - 1.9e-16 60.2 0.1 3.2e-16 59.5 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|119720421|ref|YP_920916.1| - 1.2e-10 41.3 0.1 1.6e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|119720421|ref|YP_920916.1| - 8.6e-09 36.6 0.0 3.6e-08 34.5 0.0 1.9 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Pyr_redox PF00070.27 gi|119720421|ref|YP_920916.1| - 0.017 15.7 0.7 0.047 14.2 0.7 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PALP PF00291.25 gi|119720421|ref|YP_920916.1| - 0.037 13.4 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme NAD_binding_7 PF13241.6 gi|119720421|ref|YP_920916.1| - 0.051 14.0 0.1 0.089 13.2 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding LpxI_N PF17930.1 gi|119720421|ref|YP_920916.1| - 0.093 12.6 0.2 0.31 10.9 0.0 1.8 2 0 0 2 2 2 0 LpxI N-terminal domain Oxidored_nitro PF00148.19 gi|119720421|ref|YP_920916.1| - 0.14 10.9 0.0 0.25 10.0 0.0 1.4 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase XhlA PF10779.9 gi|119720422|ref|YP_920917.1| - 4.7e-06 26.7 0.0 1.2e-05 25.4 0.0 1.8 2 0 0 2 2 1 1 Haemolysin XhlA Sugarporin_N PF11471.8 gi|119720422|ref|YP_920917.1| - 1.7e-05 24.7 7.2 0.0095 15.9 0.2 3.6 1 1 2 3 3 3 2 Maltoporin periplasmic N-terminal extension Prefoldin_3 PF13758.6 gi|119720422|ref|YP_920917.1| - 5.3e-05 23.2 2.6 7.4e-05 22.7 2.6 1.3 1 1 0 1 1 1 1 Prefoldin subunit Tropomyosin_1 PF12718.7 gi|119720422|ref|YP_920917.1| - 0.00014 22.0 0.3 0.00026 21.2 0.3 1.5 1 0 0 1 1 1 1 Tropomyosin like HSBP1 PF06825.12 gi|119720422|ref|YP_920917.1| - 0.0022 17.8 1.4 0.02 14.7 0.3 2.7 2 1 1 3 3 3 1 Heat shock factor binding protein 1 CLZ PF16526.5 gi|119720422|ref|YP_920917.1| - 0.0023 18.3 1.3 0.0083 16.5 1.3 2.1 1 1 0 1 1 1 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels BLOC1_2 PF10046.9 gi|119720422|ref|YP_920917.1| - 0.0026 18.0 0.4 0.0085 16.4 0.4 1.8 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 gi|119720422|ref|YP_920917.1| - 0.0038 17.7 0.5 0.0071 16.8 0.4 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF16 DHR10 PF18595.1 gi|119720422|ref|YP_920917.1| - 0.0043 17.1 2.1 0.0043 17.1 2.1 2.0 2 1 0 2 2 2 1 Designed helical repeat protein 10 domain FlaC_arch PF05377.11 gi|119720422|ref|YP_920917.1| - 0.0046 17.3 2.2 0.0063 16.9 0.5 2.2 2 1 0 2 2 1 1 Flagella accessory protein C (FlaC) Jnk-SapK_ap_N PF09744.9 gi|119720422|ref|YP_920917.1| - 0.01 16.0 0.2 0.01 16.0 0.2 1.6 2 0 0 2 2 1 0 JNK_SAPK-associated protein-1 ABC_tran_CTD PF16326.5 gi|119720422|ref|YP_920917.1| - 0.014 15.6 4.7 0.82 10.0 0.9 3.1 1 1 2 3 3 3 0 ABC transporter C-terminal domain Osmo_CC PF08946.10 gi|119720422|ref|YP_920917.1| - 0.014 15.6 2.6 0.81 10.0 0.1 2.7 2 1 1 3 3 2 0 Osmosensory transporter coiled coil Fib_alpha PF08702.10 gi|119720422|ref|YP_920917.1| - 0.016 15.4 0.9 0.023 14.9 0.9 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Vac_Fusion PF02346.16 gi|119720422|ref|YP_920917.1| - 0.017 14.8 2.1 0.15 11.7 0.6 2.7 2 1 1 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 TMF_DNA_bd PF12329.8 gi|119720422|ref|YP_920917.1| - 0.019 14.9 0.4 0.019 14.9 0.4 2.2 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding HrpB7 PF09486.10 gi|119720422|ref|YP_920917.1| - 0.02 15.3 1.3 0.02 15.3 1.3 1.5 2 0 0 2 2 1 0 Bacterial type III secretion protein (HrpB7) DUF4988 PF16378.5 gi|119720422|ref|YP_920917.1| - 0.021 14.5 0.3 0.051 13.2 0.3 1.7 1 1 0 1 1 1 0 Domain of unknown function MscS_porin PF12795.7 gi|119720422|ref|YP_920917.1| - 0.021 14.4 1.0 0.021 14.4 1.0 1.4 2 0 0 2 2 1 0 Mechanosensitive ion channel porin domain DUF1664 PF07889.12 gi|119720422|ref|YP_920917.1| - 0.021 14.8 0.4 0.049 13.7 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|119720422|ref|YP_920917.1| - 0.035 13.4 0.1 0.049 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF5082 PF16888.5 gi|119720422|ref|YP_920917.1| - 0.041 14.2 0.4 0.09 13.1 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) MCM PF00493.23 gi|119720422|ref|YP_920917.1| - 0.042 12.9 0.0 0.056 12.5 0.0 1.2 1 0 0 1 1 1 0 MCM P-loop domain DUF3552 PF12072.8 gi|119720422|ref|YP_920917.1| - 0.044 13.2 2.9 0.039 13.4 1.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) DASH_Spc19 PF08287.11 gi|119720422|ref|YP_920917.1| - 0.045 13.6 0.9 0.045 13.6 0.9 1.9 2 1 0 2 2 2 0 Spc19 TRPM_tetra PF16519.5 gi|119720422|ref|YP_920917.1| - 0.046 13.8 2.0 0.16 12.1 0.4 2.4 2 1 1 3 3 2 0 Tetramerisation domain of TRPM CCDC53 PF10152.9 gi|119720422|ref|YP_920917.1| - 0.048 14.1 0.4 0.13 12.7 0.5 1.6 1 1 1 2 2 2 0 Subunit CCDC53 of WASH complex ADIP PF11559.8 gi|119720422|ref|YP_920917.1| - 0.048 13.7 0.7 0.048 13.7 0.7 1.7 2 1 0 2 2 1 0 Afadin- and alpha -actinin-Binding Ax_dynein_light PF10211.9 gi|119720422|ref|YP_920917.1| - 0.048 13.6 0.8 0.066 13.2 0.8 1.4 1 1 0 1 1 1 0 Axonemal dynein light chain Lzipper-MIP1 PF14389.6 gi|119720422|ref|YP_920917.1| - 0.052 13.9 5.1 15 5.9 2.5 3.1 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 SlyX PF04102.12 gi|119720422|ref|YP_920917.1| - 0.052 14.2 1.0 0.052 14.2 1.0 2.2 3 0 0 3 3 2 0 SlyX Dynamitin PF04912.14 gi|119720422|ref|YP_920917.1| - 0.071 12.4 1.0 0.15 11.4 0.9 1.6 1 1 0 1 1 1 0 Dynamitin AAA_13 PF13166.6 gi|119720422|ref|YP_920917.1| - 0.079 11.6 0.1 0.1 11.2 0.1 1.1 1 0 0 1 1 1 0 AAA domain Baculo_PEP_C PF04513.12 gi|119720422|ref|YP_920917.1| - 0.079 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus MRF_C1 PF13887.6 gi|119720422|ref|YP_920917.1| - 0.094 11.9 3.0 8.4 5.7 0.0 3.4 1 1 3 4 4 4 0 Myelin gene regulatory factor -C-terminal domain 1 Tropomyosin PF00261.20 gi|119720422|ref|YP_920917.1| - 0.095 12.1 7.0 0.32 10.3 7.1 1.7 1 1 0 1 1 1 0 Tropomyosin NPV_P10 PF05531.12 gi|119720422|ref|YP_920917.1| - 0.098 13.1 0.1 0.2 12.1 0.1 1.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein FliD_C PF07195.12 gi|119720422|ref|YP_920917.1| - 0.15 11.5 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Prefoldin_2 PF01920.20 gi|119720422|ref|YP_920917.1| - 0.34 10.9 3.2 0.19 11.7 0.5 2.0 2 1 0 2 2 1 0 Prefoldin subunit MerR-DNA-bind PF09278.11 gi|119720422|ref|YP_920917.1| - 0.34 11.5 12.0 0.51 10.9 0.2 3.6 1 1 1 3 3 3 0 MerR, DNA binding DivIC PF04977.15 gi|119720422|ref|YP_920917.1| - 1.4 8.8 7.1 0.19 11.5 1.7 2.3 3 1 0 3 3 1 0 Septum formation initiator KLRAQ PF10205.9 gi|119720422|ref|YP_920917.1| - 1.4 9.2 4.8 1.4 9.2 1.1 2.1 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein CdvA PF18822.1 gi|119720422|ref|YP_920917.1| - 2 8.3 5.7 1 9.2 0.6 2.6 2 1 1 3 3 3 0 CdvA-like coiled-coil domain Med9 PF07544.13 gi|119720422|ref|YP_920917.1| - 2.5 8.2 5.5 0.64 10.2 1.2 2.0 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 bZIP_2 PF07716.15 gi|119720422|ref|YP_920917.1| - 4.4 7.5 11.6 0.21 11.7 1.7 3.0 3 1 1 4 4 2 0 Basic region leucine zipper DHHA1 PF02272.19 gi|119720423|ref|YP_920918.1| - 9.2e-17 61.8 0.1 1.8e-16 60.8 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|119720423|ref|YP_920918.1| - 0.00028 21.1 0.0 0.0005 20.3 0.0 1.3 1 0 0 1 1 1 1 DHH family Glyco_trans_4_5 PF16994.5 gi|119720423|ref|YP_920918.1| - 0.0038 16.9 0.0 0.0061 16.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl-transferase family 4 Nitro_FeMo-Co PF02579.17 gi|119720423|ref|YP_920918.1| - 0.033 14.5 0.4 0.23 11.8 0.1 2.4 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.17 gi|119720424|ref|YP_920919.1| - 1.5e-14 54.1 0.2 1.7e-14 53.9 0.2 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor 4HBT PF03061.22 gi|119720425|ref|YP_920920.1| - 1.6e-08 34.8 0.2 4.9e-08 33.2 0.1 1.7 2 0 0 2 2 2 1 Thioesterase superfamily CPBP PF02517.16 gi|119720426|ref|YP_920921.1| - 8.8e-08 32.4 20.5 3.9e-06 27.2 20.5 2.4 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF3267 PF11667.8 gi|119720427|ref|YP_920922.1| - 2.5e-16 59.9 0.3 2.5e-16 59.9 0.3 2.2 4 0 0 4 4 4 1 Putative zincin peptidase DUF2341 PF10102.9 gi|119720430|ref|YP_920925.1| - 9.4e-24 83.8 0.2 3.9e-23 81.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) DUF1080 PF06439.11 gi|119720430|ref|YP_920925.1| - 0.00058 20.0 0.1 0.0028 17.8 0.1 2.2 1 1 0 1 1 1 1 Domain of Unknown Function (DUF1080) Trypsin_2 PF13365.6 gi|119720432|ref|YP_920927.1| - 2.5e-34 119.4 2.9 4e-34 118.7 2.9 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|119720432|ref|YP_920927.1| - 1.9e-13 50.5 0.0 4.1e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|119720432|ref|YP_920927.1| - 2e-13 50.7 0.0 3.3e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|119720432|ref|YP_920927.1| - 1.3e-10 40.9 1.6 3.1e-10 39.7 0.5 2.1 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|119720432|ref|YP_920927.1| - 3.3e-05 24.2 0.0 7.7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Peptidase_S46 PF10459.9 gi|119720432|ref|YP_920927.1| - 0.00015 20.6 0.3 0.033 12.8 0.0 2.1 2 0 0 2 2 2 2 Peptidase S46 Tricorn_PDZ PF14685.6 gi|119720432|ref|YP_920927.1| - 0.071 13.1 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 Tricorn protease PDZ domain MFS_1 PF07690.16 gi|119720433|ref|YP_920928.1| - 4.2e-26 91.7 45.9 2.5e-18 66.1 21.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|119720433|ref|YP_920928.1| - 1.8e-05 23.8 15.9 0.0044 15.9 0.1 3.0 2 1 1 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 gi|119720433|ref|YP_920928.1| - 0.45 9.3 14.1 0.022 13.7 4.2 3.0 1 1 2 3 3 3 0 Sugar (and other) transporter ABC_tran PF00005.27 gi|119720434|ref|YP_920929.1| - 5.2e-16 59.4 0.0 7.5e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720434|ref|YP_920929.1| - 5.4e-09 36.3 0.1 0.00052 19.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|119720434|ref|YP_920929.1| - 0.00037 20.2 0.1 0.00054 19.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119720434|ref|YP_920929.1| - 0.0011 18.4 0.0 0.35 10.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119720434|ref|YP_920929.1| - 0.015 15.0 0.0 0.037 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|119720434|ref|YP_920929.1| - 0.023 14.3 0.6 0.09 12.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|119720434|ref|YP_920929.1| - 0.055 14.0 0.0 0.077 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|119720434|ref|YP_920929.1| - 0.18 12.0 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119720434|ref|YP_920929.1| - 0.18 12.0 0.0 0.31 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|119720434|ref|YP_920929.1| - 0.21 10.4 0.2 0.3 9.8 0.2 1.1 1 0 0 1 1 1 0 Predicted ATPase of the ABC class UPF0051 PF01458.17 gi|119720435|ref|YP_920930.1| - 2.3e-39 135.3 0.0 2.8e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) PEPCK_GTP PF00821.18 gi|119720436|ref|YP_920931.1| - 1.9e-104 349.4 0.0 2.4e-104 349.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|119720436|ref|YP_920931.1| - 2.9e-57 193.8 0.0 4e-57 193.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain CitMHS PF03600.16 gi|119720437|ref|YP_920932.1| - 1.9e-28 99.5 40.4 5.3e-16 58.7 21.2 2.2 1 1 0 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|119720437|ref|YP_920932.1| - 0.00023 20.3 23.4 0.0023 17.0 8.4 2.6 2 2 0 2 2 2 2 Sodium:sulfate symporter transmembrane region ECF-ribofla_trS PF07155.12 gi|119720438|ref|YP_920933.1| - 6.5e-36 123.9 14.8 7.7e-36 123.7 14.8 1.0 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|119720438|ref|YP_920933.1| - 2.7e-07 30.8 13.9 3.7e-07 30.4 13.9 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component SNARE_assoc PF09335.11 gi|119720438|ref|YP_920933.1| - 0.44 11.0 11.7 13 6.3 10.9 2.6 1 1 1 2 2 2 0 SNARE associated Golgi protein CbiQ PF02361.16 gi|119720439|ref|YP_920934.1| - 6.2e-26 91.4 6.2 1e-25 90.7 6.2 1.3 1 0 0 1 1 1 1 Cobalt transport protein DUF2516 PF10724.9 gi|119720439|ref|YP_920934.1| - 4.1 7.8 12.2 4 7.8 8.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2516) COX6C PF02937.15 gi|119720439|ref|YP_920934.1| - 4.6 7.4 5.3 1.5 9.0 0.1 2.8 2 1 1 3 3 3 0 Cytochrome c oxidase subunit VIc DUF554 PF04474.12 gi|119720440|ref|YP_920935.1| - 5.6e-66 222.1 22.1 6.3e-66 222.0 22.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF554) CitMHS_2 PF16980.5 gi|119720440|ref|YP_920935.1| - 0.0024 16.6 5.7 0.0028 16.4 5.7 1.1 1 0 0 1 1 1 1 Putative citrate transport Mntp PF02659.15 gi|119720440|ref|YP_920935.1| - 1.7 8.4 13.1 0.88 9.3 5.9 2.6 2 1 1 3 3 3 0 Putative manganese efflux pump PALP PF00291.25 gi|119720441|ref|YP_920936.1| - 3.9e-59 200.5 3.0 4.5e-59 200.3 3.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1611 PF07755.11 gi|119720442|ref|YP_920937.1| - 2e-65 219.9 0.0 2.5e-65 219.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|119720442|ref|YP_920937.1| - 2.9e-32 110.8 0.0 6.7e-32 109.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain DapB_N PF01113.20 gi|119720442|ref|YP_920937.1| - 0.0051 16.9 0.1 0.033 14.3 0.0 2.3 2 2 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus DUF498 PF04430.14 gi|119720442|ref|YP_920937.1| - 0.019 15.1 0.2 3.6 7.7 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF498/DUF598) DUF150_C PF17384.2 gi|119720442|ref|YP_920937.1| - 0.041 14.0 0.3 0.089 12.9 0.3 1.5 1 0 0 1 1 1 0 RimP C-terminal SH3 domain AAA_26 PF13500.6 gi|119720442|ref|YP_920937.1| - 0.071 12.9 0.2 0.56 10.0 0.1 2.3 1 1 1 2 2 2 0 AAA domain YdjM PF04307.14 gi|119720444|ref|YP_920939.1| - 2.4e-05 23.7 0.9 3.8e-05 23.1 0.9 1.6 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|119720444|ref|YP_920939.1| - 2 8.1 7.0 6.4 6.4 7.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) ABC_tran PF00005.27 gi|119720445|ref|YP_920940.1| - 1.7e-57 193.8 0.0 6.2e-28 98.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|119720445|ref|YP_920940.1| - 1.9e-11 44.3 0.5 0.0033 17.3 0.0 4.1 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119720445|ref|YP_920940.1| - 1.4e-10 40.7 0.3 1.1e-05 25.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720445|ref|YP_920940.1| - 4.7e-10 39.3 0.4 2.3e-06 27.2 0.2 3.5 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720445|ref|YP_920940.1| - 1.8e-07 31.7 0.1 0.005 17.2 0.2 2.6 2 1 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119720445|ref|YP_920940.1| - 2e-07 31.1 0.1 0.0064 16.4 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|119720445|ref|YP_920940.1| - 1.2e-05 25.9 0.0 0.014 15.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|119720445|ref|YP_920940.1| - 3.3e-05 23.5 0.4 0.062 12.9 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|119720445|ref|YP_920940.1| - 5.1e-05 23.1 0.1 0.0088 15.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|119720445|ref|YP_920940.1| - 5.9e-05 22.6 0.2 0.21 10.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|119720445|ref|YP_920940.1| - 6.4e-05 22.2 0.1 0.007 15.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|119720445|ref|YP_920940.1| - 7e-05 22.2 0.3 0.056 12.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin MMR_HSR1 PF01926.23 gi|119720445|ref|YP_920940.1| - 0.00018 21.6 1.0 0.23 11.6 0.4 2.8 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|119720445|ref|YP_920940.1| - 0.00022 21.1 0.0 0.084 12.6 0.0 2.4 3 0 0 3 3 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|119720445|ref|YP_920940.1| - 0.00029 20.9 1.1 0.72 9.9 0.1 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|119720445|ref|YP_920940.1| - 0.00033 20.9 0.0 0.27 11.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|119720445|ref|YP_920940.1| - 0.00047 20.1 0.6 0.1 12.5 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|119720445|ref|YP_920940.1| - 0.0005 20.6 1.0 0.62 10.6 0.0 3.3 3 0 0 3 3 3 1 AAA domain SbcCD_C PF13558.6 gi|119720445|ref|YP_920940.1| - 0.00063 19.9 0.1 1.2 9.4 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|119720445|ref|YP_920940.1| - 0.00066 18.8 0.0 0.12 11.4 0.0 2.5 2 1 0 2 2 2 1 Type II/IV secretion system protein NB-ARC PF00931.22 gi|119720445|ref|YP_920940.1| - 0.00069 18.9 0.5 0.026 13.7 0.0 2.4 2 1 0 2 2 2 1 NB-ARC domain AAA_24 PF13479.6 gi|119720445|ref|YP_920940.1| - 0.00069 19.4 0.9 0.92 9.2 0.0 2.9 3 0 0 3 3 3 2 AAA domain G-alpha PF00503.20 gi|119720445|ref|YP_920940.1| - 0.00074 18.8 0.0 0.12 11.5 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit AAA_33 PF13671.6 gi|119720445|ref|YP_920940.1| - 0.0022 18.2 0.9 0.77 9.9 0.1 3.0 3 0 0 3 3 3 1 AAA domain TsaE PF02367.17 gi|119720445|ref|YP_920940.1| - 0.0026 17.8 0.2 1.4 8.9 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|119720445|ref|YP_920940.1| - 0.0027 17.2 0.2 2 7.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|119720445|ref|YP_920940.1| - 0.0027 17.4 0.1 7.3 6.3 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|119720445|ref|YP_920940.1| - 0.0051 16.9 0.6 0.53 10.3 0.0 2.5 2 0 0 2 2 2 1 Helicase HerA, central domain RNA_helicase PF00910.22 gi|119720445|ref|YP_920940.1| - 0.0058 17.0 0.1 5 7.6 0.0 2.5 2 0 0 2 2 2 0 RNA helicase NTPase_1 PF03266.15 gi|119720445|ref|YP_920940.1| - 0.0061 16.5 2.3 0.54 10.2 0.1 2.9 3 0 0 3 3 2 1 NTPase AAA_13 PF13166.6 gi|119720445|ref|YP_920940.1| - 0.0099 14.6 0.1 4.6 5.8 0.0 3.6 4 0 0 4 4 4 0 AAA domain Sigma54_activat PF00158.26 gi|119720445|ref|YP_920940.1| - 0.012 15.4 0.2 5.5 6.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain CPT PF07931.12 gi|119720445|ref|YP_920940.1| - 0.012 15.5 0.1 0.38 10.6 0.1 2.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein SRP54 PF00448.22 gi|119720445|ref|YP_920940.1| - 0.012 15.2 1.7 4.5 6.8 0.1 3.4 4 0 0 4 4 3 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|119720445|ref|YP_920940.1| - 0.012 16.0 1.5 5.8 7.3 0.1 3.3 4 0 0 4 4 3 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|119720445|ref|YP_920940.1| - 0.015 14.7 0.4 0.5 9.7 0.1 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family APS_kinase PF01583.20 gi|119720445|ref|YP_920940.1| - 0.02 14.8 0.3 1.2 9.0 0.0 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase PduV-EutP PF10662.9 gi|119720445|ref|YP_920940.1| - 0.023 14.4 0.1 1.2 8.9 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Gtr1_RagA PF04670.12 gi|119720445|ref|YP_920940.1| - 0.024 14.0 0.2 5.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region MCM PF00493.23 gi|119720445|ref|YP_920940.1| - 0.026 13.6 0.1 0.27 10.3 0.0 2.1 2 0 0 2 2 2 0 MCM P-loop domain MeaB PF03308.16 gi|119720445|ref|YP_920940.1| - 0.028 13.4 0.1 4.7 6.1 0.0 2.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB KdpD PF02702.17 gi|119720445|ref|YP_920940.1| - 0.029 13.9 0.5 0.8 9.1 0.2 2.4 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain AAA_27 PF13514.6 gi|119720445|ref|YP_920940.1| - 0.03 13.9 0.3 3.2 7.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain Propeptide_C25 PF08126.11 gi|119720445|ref|YP_920940.1| - 0.04 13.0 0.0 0.068 12.3 0.0 1.3 1 0 0 1 1 1 0 Propeptide_C25 ATPase PF06745.13 gi|119720445|ref|YP_920940.1| - 0.043 13.2 1.1 5.6 6.2 0.1 2.6 3 0 0 3 3 3 0 KaiC Rad17 PF03215.15 gi|119720445|ref|YP_920940.1| - 0.052 13.5 0.1 0.33 10.8 0.0 2.2 3 0 0 3 3 2 0 Rad17 P-loop domain Roc PF08477.13 gi|119720445|ref|YP_920940.1| - 0.086 13.1 0.2 14 5.9 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ABC_ATPase PF09818.9 gi|119720445|ref|YP_920940.1| - 0.087 11.6 0.2 0.3 9.9 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PIF1 PF05970.14 gi|119720445|ref|YP_920940.1| - 0.087 12.0 0.0 2.1 7.4 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase AAA_10 PF12846.7 gi|119720445|ref|YP_920940.1| - 0.09 11.7 0.1 1.5 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|119720445|ref|YP_920940.1| - 0.13 11.2 0.3 1.9 7.3 0.0 2.4 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.14 gi|119720445|ref|YP_920940.1| - 0.13 12.1 0.4 11 5.9 0.0 2.6 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|119720445|ref|YP_920940.1| - 0.45 10.8 2.2 36 4.5 0.1 3.3 3 0 0 3 3 3 0 AAA domain Snapin_Pallidin PF14712.6 gi|119720446|ref|YP_920941.1| - 2e-07 31.3 9.7 1.2 9.6 0.0 5.3 2 1 5 7 7 6 3 Snapin/Pallidin DUF1664 PF07889.12 gi|119720446|ref|YP_920941.1| - 1.3e-05 25.2 2.7 0.12 12.4 0.6 2.6 2 1 1 3 3 2 2 Protein of unknown function (DUF1664) YabA PF06156.13 gi|119720446|ref|YP_920941.1| - 4.6e-05 24.0 8.7 0.1 13.3 0.6 3.4 1 1 3 4 4 4 4 Initiation control protein YabA KASH_CCD PF14662.6 gi|119720446|ref|YP_920941.1| - 5.4e-05 23.1 13.4 5.4e-05 23.1 13.4 2.5 2 1 0 2 2 2 1 Coiled-coil region of CCDC155 or KASH LPP PF04728.13 gi|119720446|ref|YP_920941.1| - 0.00042 20.7 0.1 16 6.0 0.0 4.6 2 1 3 5 5 4 0 Lipoprotein leucine-zipper Mod_r PF07200.13 gi|119720446|ref|YP_920941.1| - 0.00048 20.2 11.8 0.05 13.7 4.4 2.5 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein APG6_N PF17675.1 gi|119720446|ref|YP_920941.1| - 0.0006 20.3 36.2 0.0052 17.3 8.4 3.1 2 2 1 3 3 3 2 Apg6 coiled-coil region Latarcin PF10279.9 gi|119720446|ref|YP_920941.1| - 0.0013 19.1 26.7 0.91 10.0 6.5 4.7 2 1 2 4 4 4 1 Latarcin precursor SKA2 PF16740.5 gi|119720446|ref|YP_920941.1| - 0.0023 17.7 7.9 5.4 6.8 6.5 3.6 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 zf-C4H2 PF10146.9 gi|119720446|ref|YP_920941.1| - 0.0041 17.5 6.6 0.021 15.2 6.6 2.0 1 1 1 2 2 2 2 Zinc finger-containing protein ATP-synt_10 PF05176.14 gi|119720446|ref|YP_920941.1| - 0.0053 16.0 0.4 1.5 8.0 0.0 2.2 1 1 1 2 2 2 1 ATP10 protein DUF4709 PF15821.5 gi|119720446|ref|YP_920941.1| - 0.012 15.9 4.6 0.85 9.9 0.2 3.7 2 1 2 4 4 3 0 Domain of unknown function (DUF4709) Rbsn PF11464.8 gi|119720446|ref|YP_920941.1| - 0.014 15.1 14.2 0.71 9.7 0.8 5.1 5 1 1 6 6 5 0 Rabenosyn Rab binding domain Seryl_tRNA_N PF02403.22 gi|119720446|ref|YP_920941.1| - 0.015 15.5 15.6 0.03 14.5 9.7 3.1 2 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF1394 PF07159.12 gi|119720446|ref|YP_920941.1| - 0.019 14.2 0.1 0.034 13.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1394) TMF_DNA_bd PF12329.8 gi|119720446|ref|YP_920941.1| - 0.019 14.9 3.8 0.019 14.9 3.8 3.8 2 1 2 4 4 3 0 TATA element modulatory factor 1 DNA binding Lectin_N PF03954.14 gi|119720446|ref|YP_920941.1| - 0.028 14.2 1.2 1.6 8.5 0.4 2.9 1 1 3 4 4 4 0 Hepatic lectin, N-terminal domain FapA PF03961.13 gi|119720446|ref|YP_920941.1| - 0.031 12.9 5.7 0.41 9.2 7.1 1.9 1 1 2 3 3 3 0 Flagellar Assembly Protein A Sec34 PF04136.15 gi|119720446|ref|YP_920941.1| - 0.032 14.1 1.8 4 7.3 0.4 2.8 1 1 2 3 3 3 0 Sec34-like family VPS11_C PF12451.8 gi|119720446|ref|YP_920941.1| - 0.035 14.3 11.8 12 6.2 0.0 6.4 5 2 2 7 7 6 0 Vacuolar protein sorting protein 11 C terminal DUF2205 PF10224.9 gi|119720446|ref|YP_920941.1| - 0.037 14.0 12.7 0.76 9.8 1.4 3.8 1 1 4 5 5 5 0 Short coiled-coil protein TelA PF05816.11 gi|119720446|ref|YP_920941.1| - 0.039 13.0 4.2 1.9 7.5 0.8 2.6 1 1 1 2 2 2 0 Toxic anion resistance protein (TelA) DUF948 PF06103.11 gi|119720446|ref|YP_920941.1| - 0.046 14.0 0.1 10 6.5 0.0 3.4 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Serine_rich PF08824.10 gi|119720446|ref|YP_920941.1| - 0.062 13.3 11.1 0.51 10.3 7.7 3.0 2 1 1 3 3 3 0 Serine rich protein interaction domain ZapB PF06005.12 gi|119720446|ref|YP_920941.1| - 0.079 13.4 36.8 2.3 8.7 12.0 4.6 3 1 2 5 5 3 0 Cell division protein ZapB JAKMIP_CC3 PF16034.5 gi|119720446|ref|YP_920941.1| - 0.081 12.9 26.9 7.1 6.5 23.4 3.2 2 1 0 2 2 1 0 JAKMIP CC3 domain ADIP PF11559.8 gi|119720446|ref|YP_920941.1| - 0.088 12.9 14.9 0.096 12.8 0.7 2.7 2 1 1 3 3 2 0 Afadin- and alpha -actinin-Binding PI3K_P85_iSH2 PF16454.5 gi|119720446|ref|YP_920941.1| - 0.09 12.4 6.5 0.21 11.2 5.1 2.1 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain bZIP_1 PF00170.21 gi|119720446|ref|YP_920941.1| - 0.12 12.5 17.5 3.8 7.7 2.8 4.6 2 1 4 6 6 5 0 bZIP transcription factor JIP_LZII PF16471.5 gi|119720446|ref|YP_920941.1| - 0.16 12.2 23.1 1.3 9.3 1.0 4.8 2 1 3 5 5 4 0 JNK-interacting protein leucine zipper II DUF2968 PF11180.8 gi|119720446|ref|YP_920941.1| - 0.19 11.3 13.3 1.6 8.3 3.3 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) CENP-F_leu_zip PF10473.9 gi|119720446|ref|YP_920941.1| - 0.26 11.3 25.6 0.031 14.3 7.4 3.3 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 UPF0449 PF15136.6 gi|119720446|ref|YP_920941.1| - 0.26 11.8 10.5 2.7 8.5 1.8 3.3 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 DUF2353 PF09789.9 gi|119720446|ref|YP_920941.1| - 0.3 10.4 16.5 3.2 7.0 15.5 2.7 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) DUF16 PF01519.16 gi|119720446|ref|YP_920941.1| - 0.31 11.6 9.8 56 4.3 7.2 3.3 2 1 0 2 2 1 0 Protein of unknown function DUF16 V_ATPase_I PF01496.19 gi|119720446|ref|YP_920941.1| - 0.35 8.7 2.2 0.53 8.1 2.2 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ATG16 PF08614.11 gi|119720446|ref|YP_920941.1| - 0.42 10.8 21.4 5.1 7.3 3.5 2.7 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) TMPIT PF07851.13 gi|119720446|ref|YP_920941.1| - 0.45 9.7 5.1 0.52 9.5 4.2 1.6 1 1 0 1 1 1 0 TMPIT-like protein DUF1640 PF07798.11 gi|119720446|ref|YP_920941.1| - 0.49 10.4 8.9 22 5.0 0.0 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) HAP1_N PF04849.13 gi|119720446|ref|YP_920941.1| - 0.52 9.5 18.5 1.3 8.2 18.5 1.7 1 1 0 1 1 1 0 HAP1 N-terminal conserved region DivIC PF04977.15 gi|119720446|ref|YP_920941.1| - 0.54 10.1 21.6 2.4 8.0 3.0 4.2 1 1 3 4 4 4 0 Septum formation initiator GAS PF13851.6 gi|119720446|ref|YP_920941.1| - 0.56 9.5 15.4 2.8 7.2 14.0 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF4795 PF16043.5 gi|119720446|ref|YP_920941.1| - 0.59 9.7 7.6 6.4 6.3 3.5 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) DUF4201 PF13870.6 gi|119720446|ref|YP_920941.1| - 0.65 9.7 15.9 1.1 9.0 1.1 3.4 2 1 2 4 4 3 0 Domain of unknown function (DUF4201) DUF4061 PF13270.6 gi|119720446|ref|YP_920941.1| - 0.66 10.3 11.3 2.8 8.3 1.8 4.1 1 1 3 4 4 4 0 Domain of unknown function (DUF4061) FUSC PF04632.12 gi|119720446|ref|YP_920941.1| - 0.86 8.1 15.8 0.29 9.6 9.2 2.1 1 1 1 2 2 2 0 Fusaric acid resistance protein family CASP_C PF08172.12 gi|119720446|ref|YP_920941.1| - 0.94 8.8 9.3 9.9 5.4 2.2 2.9 1 1 2 3 3 3 0 CASP C terminal EzrA PF06160.12 gi|119720446|ref|YP_920941.1| - 1.3 7.1 11.6 4.3 5.4 2.3 3.1 2 1 2 4 4 4 0 Septation ring formation regulator, EzrA DUF4763 PF15960.5 gi|119720446|ref|YP_920941.1| - 1.3 8.3 9.7 6 6.1 1.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) HALZ PF02183.18 gi|119720446|ref|YP_920941.1| - 1.4 9.2 15.7 8.6 6.7 0.4 5.5 1 1 4 6 6 6 0 Homeobox associated leucine zipper DUF4446 PF14584.6 gi|119720446|ref|YP_920941.1| - 1.5 8.8 5.9 13 5.8 0.6 3.2 2 1 3 5 5 5 0 Protein of unknown function (DUF4446) PTRF_SDPR PF15237.6 gi|119720446|ref|YP_920941.1| - 1.5 8.4 9.6 0.2 11.3 4.0 2.1 2 1 1 3 3 2 0 PTRF/SDPR family Laminin_I PF06008.14 gi|119720446|ref|YP_920941.1| - 1.6 8.3 11.9 3.8 7.1 6.6 2.8 2 1 0 2 2 2 0 Laminin Domain I 5_nucleotid PF05761.14 gi|119720446|ref|YP_920941.1| - 2.3 7.0 6.6 1.7 7.5 5.2 1.6 2 0 0 2 2 1 0 5' nucleotidase family Nup88 PF10168.9 gi|119720446|ref|YP_920941.1| - 2.6 5.7 13.9 24 2.6 14.0 2.0 1 1 0 1 1 1 0 Nuclear pore component TMF_TATA_bd PF12325.8 gi|119720446|ref|YP_920941.1| - 2.7 8.2 21.1 6.1 7.1 9.1 3.3 2 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Laminin_II PF06009.12 gi|119720446|ref|YP_920941.1| - 2.7 8.0 6.5 1.5 8.9 1.0 2.7 2 1 1 3 3 3 0 Laminin Domain II COMP PF11598.8 gi|119720446|ref|YP_920941.1| - 3.9 8.0 6.2 42 4.7 0.4 3.8 3 0 0 3 3 3 0 Cartilage oligomeric matrix protein UPF0242 PF06785.11 gi|119720446|ref|YP_920941.1| - 4.4 7.4 16.5 31 4.6 16.5 2.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ERM PF00769.19 gi|119720446|ref|YP_920941.1| - 6.4 6.5 26.7 1.6 8.5 20.1 2.4 2 1 0 2 2 2 0 Ezrin/radixin/moesin family ECF-ribofla_trS PF07155.12 gi|119720447|ref|YP_920942.1| - 1.8e-07 31.3 12.6 1.8e-07 31.3 12.6 2.0 1 1 1 2 2 2 1 ECF-type riboflavin transporter, S component Thia_YuaJ PF09515.10 gi|119720447|ref|YP_920942.1| - 3.8e-06 27.0 3.9 3.8e-06 27.0 3.9 1.9 2 1 0 2 2 2 1 Thiamine transporter protein (Thia_YuaJ) ECF_trnsprt PF12822.7 gi|119720447|ref|YP_920942.1| - 3e-05 24.2 12.9 4.5e-05 23.6 12.9 1.3 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ABC_tran PF00005.27 gi|119720448|ref|YP_920943.1| - 3.8e-56 189.4 0.0 9.3e-27 94.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|119720448|ref|YP_920943.1| - 4.7e-13 49.6 2.7 0.0046 16.8 0.0 4.1 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119720448|ref|YP_920943.1| - 1.9e-10 40.3 0.2 9.5e-05 22.1 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720448|ref|YP_920943.1| - 2.1e-10 40.4 0.0 0.0039 16.6 0.0 3.8 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720448|ref|YP_920943.1| - 1e-07 32.5 0.2 0.0041 17.5 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|119720448|ref|YP_920943.1| - 1.6e-06 28.4 0.2 0.34 11.2 0.1 4.0 2 2 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|119720448|ref|YP_920943.1| - 2.2e-06 27.7 0.1 0.026 14.4 0.0 2.7 3 0 0 3 3 2 2 RsgA GTPase AAA_25 PF13481.6 gi|119720448|ref|YP_920943.1| - 1.1e-05 25.1 0.2 0.2 11.2 0.0 3.5 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|119720448|ref|YP_920943.1| - 5.7e-05 22.6 0.0 0.27 10.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|119720448|ref|YP_920943.1| - 0.00053 19.8 0.0 0.037 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|119720448|ref|YP_920943.1| - 0.00056 20.0 0.2 0.67 10.1 0.0 2.7 2 1 0 2 2 2 2 50S ribosome-binding GTPase T2SSE PF00437.20 gi|119720448|ref|YP_920943.1| - 0.00078 18.6 0.0 0.16 11.0 0.0 3.0 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|119720448|ref|YP_920943.1| - 0.0008 19.2 0.0 0.029 14.1 0.0 2.5 2 2 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|119720448|ref|YP_920943.1| - 0.00081 19.6 1.5 0.14 12.3 0.2 3.5 3 1 0 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|119720448|ref|YP_920943.1| - 0.0017 18.3 0.3 0.3 11.0 0.0 3.2 3 0 0 3 3 3 1 NTPase TniB PF05621.11 gi|119720448|ref|YP_920943.1| - 0.0018 17.7 0.4 3.8 6.9 0.0 3.9 4 0 0 4 4 4 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|119720448|ref|YP_920943.1| - 0.0026 18.1 0.0 0.38 11.2 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_27 PF13514.6 gi|119720448|ref|YP_920943.1| - 0.0039 16.8 0.0 3.2 7.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|119720448|ref|YP_920943.1| - 0.005 16.6 0.1 0.73 9.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|119720448|ref|YP_920943.1| - 0.0056 17.2 0.0 0.43 11.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|119720448|ref|YP_920943.1| - 0.0088 16.3 0.0 1.4 9.2 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|119720448|ref|YP_920943.1| - 0.0097 16.2 0.0 18 5.6 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|119720448|ref|YP_920943.1| - 0.01 16.4 0.0 5.8 7.5 0.0 2.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|119720448|ref|YP_920943.1| - 0.01 15.8 0.6 0.19 11.7 0.0 3.0 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|119720448|ref|YP_920943.1| - 0.011 15.6 0.4 4.1 7.1 0.1 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.22 gi|119720448|ref|YP_920943.1| - 0.012 14.8 0.3 0.25 10.5 0.0 2.6 3 0 0 3 3 3 0 NB-ARC domain AAA_7 PF12775.7 gi|119720448|ref|YP_920943.1| - 0.013 15.0 0.0 0.73 9.3 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|119720448|ref|YP_920943.1| - 0.014 15.3 0.0 0.45 10.4 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|119720448|ref|YP_920943.1| - 0.015 15.2 0.0 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 NACHT domain PduV-EutP PF10662.9 gi|119720448|ref|YP_920943.1| - 0.017 14.9 0.1 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KdpD PF02702.17 gi|119720448|ref|YP_920943.1| - 0.017 14.6 0.3 3.9 6.9 0.0 2.3 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain APS_kinase PF01583.20 gi|119720448|ref|YP_920943.1| - 0.024 14.5 0.1 1.2 9.1 0.0 2.6 3 0 0 3 3 2 0 Adenylylsulphate kinase DLIC PF05783.11 gi|119720448|ref|YP_920943.1| - 0.025 13.4 0.3 0.42 9.4 0.1 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) IstB_IS21 PF01695.17 gi|119720448|ref|YP_920943.1| - 0.027 14.2 0.1 23 4.6 0.0 3.5 4 0 0 4 4 4 0 IstB-like ATP binding protein Fer4_NifH PF00142.18 gi|119720448|ref|YP_920943.1| - 0.029 13.8 0.1 0.077 12.4 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATPase PF06745.13 gi|119720448|ref|YP_920943.1| - 0.037 13.4 0.7 7.6 5.8 0.0 3.2 4 0 0 4 4 3 0 KaiC AAA_PrkA PF08298.11 gi|119720448|ref|YP_920943.1| - 0.041 12.8 0.1 1.3 7.9 0.0 2.3 2 0 0 2 2 2 0 PrkA AAA domain G-alpha PF00503.20 gi|119720448|ref|YP_920943.1| - 0.057 12.6 0.0 0.33 10.1 0.0 1.9 2 0 0 2 2 2 0 G-protein alpha subunit CPT PF07931.12 gi|119720448|ref|YP_920943.1| - 0.059 13.2 0.0 8.4 6.2 0.0 3.1 4 0 0 4 4 3 0 Chloramphenicol phosphotransferase-like protein PIF1 PF05970.14 gi|119720448|ref|YP_920943.1| - 0.061 12.5 0.0 0.46 9.6 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase Zeta_toxin PF06414.12 gi|119720448|ref|YP_920943.1| - 0.12 11.6 0.0 0.38 10.0 0.0 1.8 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|119720448|ref|YP_920943.1| - 0.15 12.1 0.0 24 5.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|119720448|ref|YP_920943.1| - 0.21 11.6 0.0 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|119720448|ref|YP_920943.1| - 0.24 11.3 0.0 27 4.6 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain CbiQ PF02361.16 gi|119720449|ref|YP_920944.1| - 9.1e-32 110.4 10.8 1.4e-31 109.9 10.8 1.3 1 0 0 1 1 1 1 Cobalt transport protein Pribosyltran PF00156.27 gi|119720450|ref|YP_920945.1| - 0.1 12.1 0.0 0.29 10.7 0.0 1.8 2 0 0 2 2 2 0 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119720450|ref|YP_920945.1| - 0.13 11.7 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase ABC_tran PF00005.27 gi|119720451|ref|YP_920946.1| - 3.4e-33 115.1 0.0 5e-33 114.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|119720451|ref|YP_920946.1| - 1.2e-11 45.3 0.2 6.4e-11 42.9 0.1 2.4 2 0 0 2 2 1 1 MalK OB fold domain CysA_C_terminal PF17850.1 gi|119720451|ref|YP_920946.1| - 1.3e-07 32.0 1.2 4.6e-07 30.3 0.6 2.3 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|119720451|ref|YP_920946.1| - 3e-07 30.5 0.0 0.0096 15.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|119720451|ref|YP_920946.1| - 5.9e-06 26.4 0.7 1.6e-05 25.0 0.1 2.1 2 0 0 2 2 2 1 TOBE domain AAA PF00004.29 gi|119720451|ref|YP_920946.1| - 0.00046 20.6 0.0 0.062 13.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|119720451|ref|YP_920946.1| - 0.00092 19.2 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|119720451|ref|YP_920946.1| - 0.0058 17.0 0.1 0.011 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|119720451|ref|YP_920946.1| - 0.012 15.1 0.0 0.5 9.8 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119720451|ref|YP_920946.1| - 0.013 15.8 0.4 0.038 14.3 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119720451|ref|YP_920946.1| - 0.038 14.2 0.2 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain TOBE PF03459.17 gi|119720451|ref|YP_920946.1| - 0.044 14.1 0.0 1.2 9.5 0.0 2.9 2 0 0 2 2 2 0 TOBE domain AAA_30 PF13604.6 gi|119720451|ref|YP_920946.1| - 0.054 13.2 0.1 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|119720451|ref|YP_920946.1| - 0.057 13.3 0.1 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase Fn3-like PF14310.6 gi|119720451|ref|YP_920946.1| - 0.065 13.4 0.4 8.2 6.6 0.0 3.3 3 0 0 3 3 3 0 Fibronectin type III-like domain ATPase_2 PF01637.18 gi|119720451|ref|YP_920946.1| - 0.086 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|119720451|ref|YP_920946.1| - 0.094 13.2 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119720451|ref|YP_920946.1| - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|119720452|ref|YP_920947.1| - 4.6e-15 55.8 15.6 4.6e-15 55.8 15.6 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4791 PF16039.5 gi|119720452|ref|YP_920947.1| - 0.17 11.4 3.9 2.6 7.6 0.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4791) BPD_transp_1 PF00528.22 gi|119720453|ref|YP_920948.1| - 1.9e-10 40.8 21.5 1.9e-10 40.8 21.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|119720454|ref|YP_920949.1| - 8.3e-32 111.1 1.8 1.1e-31 110.7 1.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119720454|ref|YP_920949.1| - 1.1e-30 107.7 6.9 1.5e-30 107.2 6.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|119720454|ref|YP_920949.1| - 2.5e-05 23.8 0.8 0.00019 20.9 0.2 2.4 2 2 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119720454|ref|YP_920949.1| - 0.0013 18.6 0.0 0.0041 16.9 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4307 PF14155.6 gi|119720454|ref|YP_920949.1| - 0.11 12.4 0.1 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Wzz PF02706.15 gi|119720454|ref|YP_920949.1| - 0.13 12.5 0.3 0.69 10.3 0.1 2.2 2 0 0 2 2 2 0 Chain length determinant protein Regulator_TrmB PF11495.8 gi|119720455|ref|YP_920950.1| - 1.4e-54 184.8 0.1 1.7e-54 184.5 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|119720455|ref|YP_920950.1| - 1.2e-13 50.7 0.1 2.1e-13 50.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119720455|ref|YP_920950.1| - 2.9e-05 23.5 0.0 6.6e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|119720455|ref|YP_920950.1| - 0.00031 20.8 0.0 0.00066 19.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.6 gi|119720455|ref|YP_920950.1| - 0.00031 21.2 0.0 0.0008 19.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|119720455|ref|YP_920950.1| - 0.0004 20.1 0.1 0.00086 19.1 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119720455|ref|YP_920950.1| - 0.0012 18.7 0.1 0.0022 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119720455|ref|YP_920950.1| - 0.0029 17.6 0.0 0.0059 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|119720455|ref|YP_920950.1| - 0.0077 16.1 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|119720455|ref|YP_920950.1| - 0.024 15.0 0.0 0.046 14.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator GHL6 PF14871.6 gi|119720456|ref|YP_920951.1| - 3.1e-38 131.0 0.0 7.9e-38 129.7 0.0 1.7 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 GHL10 PF02638.15 gi|119720456|ref|YP_920951.1| - 1.7e-08 33.9 0.0 2.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase-like 10 DUF4015 PF13200.6 gi|119720456|ref|YP_920951.1| - 7.9e-08 31.7 0.0 1.2e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain Glyco_hydro_42M PF08532.10 gi|119720456|ref|YP_920951.1| - 5.5e-06 26.0 0.0 1.6e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain DUF4434 PF14488.6 gi|119720456|ref|YP_920951.1| - 0.014 15.4 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) CoA_binding_2 PF13380.6 gi|119720456|ref|YP_920951.1| - 0.028 14.9 0.0 19 5.8 0.0 3.1 2 1 0 2 2 2 0 CoA binding domain GHL15 PF14885.6 gi|119720456|ref|YP_920951.1| - 0.19 11.6 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 ABC_tran PF00005.27 gi|119720457|ref|YP_920952.1| - 3.5e-37 128.0 0.0 5e-37 127.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720457|ref|YP_920952.1| - 2.2e-08 34.3 0.0 0.00034 20.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|119720457|ref|YP_920952.1| - 5.2e-07 29.7 0.5 5.2e-07 29.7 0.5 2.5 2 1 1 3 3 3 1 TOBE domain Rad17 PF03215.15 gi|119720457|ref|YP_920952.1| - 0.00088 19.2 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain OB_MalK PF17912.1 gi|119720457|ref|YP_920952.1| - 0.0013 19.5 0.1 0.014 16.2 0.0 2.8 3 0 0 3 3 2 1 MalK OB fold domain AAA PF00004.29 gi|119720457|ref|YP_920952.1| - 0.0017 18.8 0.2 0.017 15.6 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|119720457|ref|YP_920952.1| - 0.0057 16.1 0.1 0.11 11.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial TniB protein SMC_N PF02463.19 gi|119720457|ref|YP_920952.1| - 0.0064 16.0 0.1 0.041 13.3 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720457|ref|YP_920952.1| - 0.024 15.0 0.8 0.067 13.6 0.8 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|119720457|ref|YP_920952.1| - 0.032 14.2 0.4 0.21 11.6 0.4 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|119720457|ref|YP_920952.1| - 0.054 13.8 1.0 0.74 10.1 0.1 2.4 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|119720457|ref|YP_920952.1| - 0.088 13.1 0.1 0.73 10.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SBP_bac_6 PF13343.6 gi|119720458|ref|YP_920953.1| - 8.7e-31 107.2 0.3 1.4e-30 106.6 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119720458|ref|YP_920953.1| - 1.1e-19 71.1 0.0 1.6e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|119720458|ref|YP_920953.1| - 2.1e-19 70.5 0.3 3.1e-19 69.9 0.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119720458|ref|YP_920953.1| - 5.4e-16 59.4 3.4 7.7e-16 58.9 3.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Wzz PF02706.15 gi|119720458|ref|YP_920953.1| - 0.099 13.0 0.6 58 4.1 0.1 3.3 3 0 0 3 3 3 0 Chain length determinant protein BPD_transp_1 PF00528.22 gi|119720459|ref|YP_920954.1| - 5.8e-30 104.4 51.6 1.1e-17 64.4 14.8 3.5 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component HTH_28 PF13518.6 gi|119720459|ref|YP_920954.1| - 0.064 13.4 0.1 2.6 8.2 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF5534 PF17686.1 gi|119720459|ref|YP_920954.1| - 0.11 12.8 0.5 0.22 11.7 0.5 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5534) HEPN PF05168.14 gi|119720460|ref|YP_920955.1| - 1.1e-13 51.3 0.4 1.4e-13 51.0 0.4 1.2 1 0 0 1 1 1 1 HEPN domain MFS_1 PF07690.16 gi|119720461|ref|YP_920956.1| - 4.5 6.1 34.3 0.34 9.8 25.7 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily DUF3681 PF12442.8 gi|119720462|ref|YP_920957.1| - 0.071 13.6 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3681) DUF3849 PF12960.7 gi|119720462|ref|YP_920957.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3849) ABC_tran PF00005.27 gi|119720463|ref|YP_920958.1| - 1.2e-29 103.5 0.0 1.8e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720463|ref|YP_920958.1| - 8.7e-12 45.5 0.0 2e-06 27.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|119720463|ref|YP_920958.1| - 3.8e-09 37.1 0.0 8.2e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|119720463|ref|YP_920958.1| - 0.00026 21.4 0.0 0.00078 19.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|119720463|ref|YP_920958.1| - 0.0016 18.2 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119720463|ref|YP_920958.1| - 0.0085 15.8 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119720463|ref|YP_920958.1| - 0.012 16.1 0.0 0.02 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119720463|ref|YP_920958.1| - 0.017 15.4 0.0 0.042 14.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119720463|ref|YP_920958.1| - 0.021 15.1 0.0 0.047 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|119720463|ref|YP_920958.1| - 0.029 14.0 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119720463|ref|YP_920958.1| - 0.033 14.6 0.0 0.058 13.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|119720463|ref|YP_920958.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|119720463|ref|YP_920958.1| - 0.072 12.7 0.1 0.19 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119720463|ref|YP_920958.1| - 0.085 13.3 0.1 0.54 10.7 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|119720463|ref|YP_920958.1| - 0.085 12.3 0.0 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|119720463|ref|YP_920958.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 gi|119720463|ref|YP_920958.1| - 0.16 11.9 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|119720463|ref|YP_920958.1| - 0.16 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|119720463|ref|YP_920958.1| - 0.25 9.9 0.0 0.38 9.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|119720463|ref|YP_920958.1| - 0.27 8.7 0.0 0.36 8.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane PF01061.24 gi|119720464|ref|YP_920959.1| - 1.7e-34 119.1 13.9 1.7e-34 119.1 13.9 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|119720464|ref|YP_920959.1| - 2.4e-15 56.5 17.7 2.9e-15 56.2 17.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|119720464|ref|YP_920959.1| - 2.7e-07 30.1 17.0 3.5e-07 29.8 17.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein TrmB PF01978.19 gi|119720465|ref|YP_920960.1| - 7.1e-22 77.1 0.4 2.8e-21 75.1 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|119720465|ref|YP_920960.1| - 0.00038 20.4 0.0 0.0012 18.8 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|119720465|ref|YP_920960.1| - 0.0015 18.3 0.3 0.0059 16.4 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|119720465|ref|YP_920960.1| - 0.004 17.5 0.0 0.011 16.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|119720465|ref|YP_920960.1| - 0.0077 16.2 0.2 0.4 10.7 0.0 2.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|119720465|ref|YP_920960.1| - 0.011 15.8 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|119720465|ref|YP_920960.1| - 0.02 15.3 0.1 4.1 7.9 0.0 2.3 1 1 1 2 2 2 0 FaeA-like protein ATP-synt_D PF01813.17 gi|119720465|ref|YP_920960.1| - 0.024 14.5 0.1 0.13 12.1 0.1 2.0 2 0 0 2 2 2 0 ATP synthase subunit D DUF3958 PF13125.6 gi|119720465|ref|YP_920960.1| - 0.032 14.4 0.8 0.057 13.6 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3958) HTH_23 PF13384.6 gi|119720465|ref|YP_920960.1| - 0.079 12.8 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain BST2 PF16716.5 gi|119720465|ref|YP_920960.1| - 0.18 12.4 0.3 0.39 11.3 0.3 1.5 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 ATPase PF06745.13 gi|119720466|ref|YP_920961.1| - 5.9e-26 91.2 0.0 7e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 KaiC FMN_dh PF01070.18 gi|119720466|ref|YP_920961.1| - 0.044 12.8 0.0 0.058 12.4 0.0 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase MEDS PF14417.6 gi|119720466|ref|YP_920961.1| - 0.069 13.0 0.0 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAXNEB PF05625.11 gi|119720466|ref|YP_920961.1| - 0.082 12.0 0.0 0.49 9.5 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein Na_sulph_symp PF00939.19 gi|119720467|ref|YP_920962.1| - 3e-83 280.5 40.0 3.7e-83 280.2 40.0 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|119720467|ref|YP_920962.1| - 7.1e-24 84.5 31.8 7.1e-24 84.5 31.8 1.8 2 0 0 2 2 2 1 Citrate transporter NPCBM_assoc PF10633.9 gi|119720468|ref|YP_920963.1| - 0.13 12.5 2.5 4.4 7.6 0.1 3.3 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Beta-Casp PF10996.8 gi|119720469|ref|YP_920964.1| - 3e-11 43.6 0.0 6.3e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|119720469|ref|YP_920964.1| - 1.5e-07 31.6 0.2 3.6e-07 30.4 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119720469|ref|YP_920964.1| - 9.2e-06 25.3 0.0 2.4e-05 24.0 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|119720469|ref|YP_920964.1| - 3.8e-05 23.2 0.0 7.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|119720469|ref|YP_920964.1| - 0.0009 19.1 0.1 0.0025 17.7 0.0 1.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain PhosphMutase PF10143.9 gi|119720470|ref|YP_920965.1| - 7.3e-57 191.9 0.0 1e-56 191.4 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|119720470|ref|YP_920965.1| - 8.8e-37 126.8 0.0 1e-36 126.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|119720470|ref|YP_920965.1| - 5.1e-05 22.4 0.0 7.5e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase DUF2384 PF09722.10 gi|119720470|ref|YP_920965.1| - 0.1 12.7 0.0 0.32 11.1 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) CoA_binding_2 PF13380.6 gi|119720470|ref|YP_920965.1| - 0.13 12.8 0.0 2.2 8.8 0.0 2.6 3 0 0 3 3 3 0 CoA binding domain Cu_amine_oxidN2 PF02727.16 gi|119720471|ref|YP_920966.1| - 0.037 14.2 0.0 0.061 13.6 0.0 1.3 1 0 0 1 1 1 0 Copper amine oxidase, N2 domain ParG PF09274.10 gi|119720472|ref|YP_920967.1| - 0.071 13.3 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 ParG AhpC-TSA PF00578.21 gi|119720473|ref|YP_920968.1| - 3.1e-36 124.0 0.0 4.5e-36 123.5 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|119720473|ref|YP_920968.1| - 2.2e-17 63.1 0.0 3e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|119720473|ref|YP_920968.1| - 8.3e-13 47.9 0.1 1.5e-12 47.2 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|119720473|ref|YP_920968.1| - 0.069 13.3 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme NurA PF09376.10 gi|119720474|ref|YP_920969.1| - 1.7e-15 57.4 3.1 6.8e-15 55.4 3.1 2.1 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|119720475|ref|YP_920970.1| - 1.4e-39 136.5 0.0 2.5e-39 135.7 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|119720475|ref|YP_920970.1| - 3.2e-06 26.3 0.0 0.00023 20.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain DUF853 PF05872.12 gi|119720475|ref|YP_920970.1| - 7e-06 24.9 0.0 0.0041 15.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|119720475|ref|YP_920970.1| - 1.3e-05 24.3 0.0 0.045 12.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain HAS-barrel PF09378.10 gi|119720475|ref|YP_920970.1| - 3.4e-05 23.9 0.3 0.00039 20.5 0.1 2.6 2 1 0 2 2 2 1 HAS barrel domain T4SS-DNA_transf PF02534.14 gi|119720475|ref|YP_920970.1| - 4.3e-05 22.5 0.0 5.8e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer Zot PF05707.12 gi|119720475|ref|YP_920970.1| - 0.0016 18.1 0.0 0.0037 16.9 0.0 1.6 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA PF00004.29 gi|119720475|ref|YP_920970.1| - 0.0025 18.2 0.1 0.015 15.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119720475|ref|YP_920970.1| - 0.015 15.6 0.0 2.1 8.6 0.0 2.6 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|119720475|ref|YP_920970.1| - 0.021 14.2 0.1 0.66 9.3 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family DEAD PF00270.29 gi|119720475|ref|YP_920970.1| - 0.19 11.5 0.0 17 5.1 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase ResIII PF04851.15 gi|119720475|ref|YP_920970.1| - 0.22 11.5 0.0 3.4 7.6 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Metallophos PF00149.28 gi|119720476|ref|YP_920971.1| - 1.3e-12 48.7 0.1 2.2e-12 47.9 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|119720476|ref|YP_920971.1| - 2.3e-07 31.2 0.0 8.6e-07 29.3 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_23 PF13476.6 gi|119720477|ref|YP_920972.1| - 3.3e-21 76.7 1.6 3.3e-21 76.7 1.6 5.5 2 1 0 3 3 2 1 AAA domain SMC_N PF02463.19 gi|119720477|ref|YP_920972.1| - 6.9e-09 35.5 0.0 4.9e-08 32.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|119720477|ref|YP_920972.1| - 9.9e-05 22.0 0.0 9.9e-05 22.0 0.0 4.2 4 0 0 4 4 4 1 AAA domain NPV_P10 PF05531.12 gi|119720477|ref|YP_920972.1| - 0.00035 21.0 7.3 19 5.8 0.2 5.7 6 0 0 6 6 6 0 Nucleopolyhedrovirus P10 protein SbcCD_C PF13558.6 gi|119720477|ref|YP_920972.1| - 0.00044 20.4 0.2 0.0021 18.3 0.0 2.3 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|119720477|ref|YP_920972.1| - 0.00051 19.9 1.9 0.00051 19.9 1.9 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|119720477|ref|YP_920972.1| - 0.00056 19.6 0.0 0.0051 16.5 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF3450 PF11932.8 gi|119720477|ref|YP_920972.1| - 0.0019 17.6 3.2 0.0019 17.6 3.2 6.0 3 2 2 5 5 5 2 Protein of unknown function (DUF3450) Phage_GP20 PF06810.11 gi|119720477|ref|YP_920972.1| - 0.0026 17.6 33.0 0.16 11.7 0.3 5.5 4 1 1 5 5 5 3 Phage minor structural protein GP20 AAA_21 PF13304.6 gi|119720477|ref|YP_920972.1| - 0.0084 16.0 9.0 0.48 10.2 0.0 4.3 4 1 1 5 5 5 2 AAA domain, putative AbiEii toxin, Type IV TA system Baculo_PEP_C PF04513.12 gi|119720477|ref|YP_920972.1| - 0.012 15.6 2.3 13 5.8 0.0 4.5 4 1 0 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5082 PF16888.5 gi|119720477|ref|YP_920972.1| - 0.014 15.7 9.9 0.014 15.7 9.9 4.7 5 0 0 5 5 5 0 Domain of unknown function (DUF5082) BLOC1_2 PF10046.9 gi|119720477|ref|YP_920972.1| - 0.016 15.5 42.9 0.15 12.4 0.6 6.1 4 1 1 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FPP PF05911.11 gi|119720477|ref|YP_920972.1| - 0.028 12.6 47.6 0.0097 14.1 20.3 3.3 3 0 0 3 3 3 0 Filament-like plant protein, long coiled-coil GAS PF13851.6 gi|119720477|ref|YP_920972.1| - 0.076 12.4 77.0 0.017 14.5 3.0 5.1 3 2 0 4 4 4 0 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|119720477|ref|YP_920972.1| - 0.13 12.3 88.3 0.22 11.5 28.7 5.8 3 2 3 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|119720477|ref|YP_920972.1| - 0.32 11.1 58.9 0.065 13.3 0.7 5.8 4 2 1 5 5 5 0 Afadin- and alpha -actinin-Binding DUF1664 PF07889.12 gi|119720477|ref|YP_920972.1| - 0.61 10.1 32.0 3.8 7.6 2.6 6.1 3 2 4 7 7 7 0 Protein of unknown function (DUF1664) Sec8_exocyst PF04048.14 gi|119720477|ref|YP_920972.1| - 1 9.2 12.2 18 5.2 0.3 4.8 3 1 1 4 4 4 0 Sec8 exocyst complex component specific domain Retrotrans_gag PF03732.17 gi|119720477|ref|YP_920972.1| - 1.1 9.6 7.8 0.15 12.4 0.9 3.1 2 1 1 3 3 2 0 Retrotransposon gag protein Bacillus_HBL PF05791.11 gi|119720477|ref|YP_920972.1| - 2.1 8.1 10.3 43 3.9 1.0 4.4 4 1 1 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) DUF812 PF05667.11 gi|119720477|ref|YP_920972.1| - 5.6 5.7 53.3 2.7 6.8 9.9 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF812) Cauli_AT PF03233.13 gi|119720477|ref|YP_920972.1| - 6.8 6.6 27.9 6.5 6.7 4.6 5.7 5 1 1 6 6 6 0 Aphid transmission protein 2-Hacid_dh_C PF02826.19 gi|119720478|ref|YP_920973.1| - 8.5e-56 188.1 0.0 1.1e-55 187.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|119720478|ref|YP_920973.1| - 9.6e-18 64.1 0.0 1.2e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|119720478|ref|YP_920973.1| - 2.9e-06 27.5 0.0 4.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|119720478|ref|YP_920973.1| - 4.8e-05 23.0 0.0 9e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|119720478|ref|YP_920973.1| - 5.1e-05 23.8 0.3 0.00022 21.7 0.0 2.1 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|119720478|ref|YP_920973.1| - 0.00014 22.1 0.0 0.00025 21.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|119720478|ref|YP_920973.1| - 0.00054 19.3 0.0 0.0016 17.8 0.0 1.7 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|119720478|ref|YP_920973.1| - 0.00076 19.7 0.1 0.0054 17.0 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain XdhC_C PF13478.6 gi|119720478|ref|YP_920973.1| - 0.0012 19.3 0.0 0.0024 18.4 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|119720478|ref|YP_920973.1| - 0.0072 16.9 0.3 0.23 12.0 0.0 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|119720478|ref|YP_920973.1| - 0.0073 16.4 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DUF364 PF04016.12 gi|119720478|ref|YP_920973.1| - 0.0095 15.5 0.0 0.052 13.1 0.0 2.0 2 0 0 2 2 2 1 Putative heavy-metal chelation NAD_binding_7 PF13241.6 gi|119720478|ref|YP_920973.1| - 0.014 15.8 0.1 0.058 13.8 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|119720478|ref|YP_920973.1| - 0.031 14.2 0.4 0.69 9.8 0.0 2.4 2 1 0 2 2 2 0 NAD(P)H-binding NAD_Gly3P_dh_N PF01210.23 gi|119720478|ref|YP_920973.1| - 0.05 13.6 0.1 1.5 8.8 0.0 2.4 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ELFV_dehydrog PF00208.21 gi|119720478|ref|YP_920973.1| - 0.056 13.1 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ADH_zinc_N PF00107.26 gi|119720478|ref|YP_920973.1| - 0.077 13.0 0.0 5.8 6.9 0.0 2.4 2 1 0 2 2 2 0 Zinc-binding dehydrogenase DpaA_N PF16924.5 gi|119720478|ref|YP_920973.1| - 0.079 13.0 0.0 0.17 11.9 0.0 1.6 1 1 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|119720478|ref|YP_920973.1| - 0.081 13.2 0.0 0.27 11.5 0.0 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_N PF00044.24 gi|119720478|ref|YP_920973.1| - 0.09 13.1 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|119720478|ref|YP_920973.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.6 gi|119720479|ref|YP_920974.1| - 1.5e-41 143.2 5.7 1.9e-41 142.9 5.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|119720479|ref|YP_920974.1| - 2.3e-32 112.5 0.0 2.8e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 gi|119720479|ref|YP_920974.1| - 1.2e-09 37.5 0.3 1.7e-09 37.1 0.3 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|119720479|ref|YP_920974.1| - 6.6e-08 31.9 0.1 3.7e-07 29.4 0.1 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 gi|119720479|ref|YP_920974.1| - 0.0017 17.8 0.0 0.83 9.0 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding proteins and sugar binding domain of LacI family PrpR_N PF06506.11 gi|119720479|ref|YP_920974.1| - 0.094 12.3 0.1 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 Propionate catabolism activator DapB_N PF01113.20 gi|119720479|ref|YP_920974.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HEM4 PF02602.15 gi|119720479|ref|YP_920974.1| - 0.12 11.7 0.1 0.27 10.6 0.1 1.5 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Ribosomal_L12_N PF16320.5 gi|119720479|ref|YP_920974.1| - 2 8.2 0.0 2 8.2 0.0 2.9 3 0 0 3 3 3 0 Ribosomal protein L7/L12 dimerisation domain BPD_transp_2 PF02653.16 gi|119720480|ref|YP_920975.1| - 6e-31 107.6 35.2 8.4e-31 107.1 35.2 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF5337 PF17272.2 gi|119720480|ref|YP_920975.1| - 4.9 7.1 8.4 5.8 6.8 0.4 3.6 2 1 2 4 4 4 0 Family of unknown function (DUF5337) BPD_transp_2 PF02653.16 gi|119720481|ref|YP_920976.1| - 2.3e-45 154.9 27.9 2.7e-45 154.6 27.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF350 PF03994.14 gi|119720481|ref|YP_920976.1| - 1.8 8.8 12.6 1.3 9.2 0.1 4.0 4 1 0 4 4 4 0 Domain of Unknown Function (DUF350) ABC_tran PF00005.27 gi|119720482|ref|YP_920977.1| - 5.5e-24 85.2 0.0 6.9e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|119720482|ref|YP_920977.1| - 5.2e-09 35.8 0.1 8.7e-09 35.1 0.1 1.3 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|119720482|ref|YP_920977.1| - 2.4e-07 30.9 2.9 0.00035 20.5 0.6 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119720482|ref|YP_920977.1| - 9.2e-05 23.0 0.1 0.00014 22.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119720482|ref|YP_920977.1| - 0.00011 21.8 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720482|ref|YP_920977.1| - 0.00037 20.0 0.1 0.099 12.1 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720482|ref|YP_920977.1| - 0.047 14.1 0.0 0.066 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|119720482|ref|YP_920977.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|119720482|ref|YP_920977.1| - 0.12 11.4 0.0 0.34 9.9 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|119720482|ref|YP_920977.1| - 0.14 12.5 0.0 0.34 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain FeoB_N PF02421.18 gi|119720482|ref|YP_920977.1| - 0.21 11.1 0.2 0.36 10.3 0.2 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B NB-ARC PF00931.22 gi|119720482|ref|YP_920977.1| - 0.22 10.6 0.1 0.34 10.1 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_15 PF13175.6 gi|119720482|ref|YP_920977.1| - 0.31 10.7 0.0 0.42 10.3 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|119720483|ref|YP_920978.1| - 8.4e-33 113.8 0.0 1.1e-32 113.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720483|ref|YP_920978.1| - 6.3e-12 45.9 0.2 2.3e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720483|ref|YP_920978.1| - 9.4e-06 25.2 0.3 0.031 13.7 0.1 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119720483|ref|YP_920978.1| - 1.7e-05 25.1 0.1 9e-05 22.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119720483|ref|YP_920978.1| - 0.0007 19.3 0.1 0.0015 18.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Dynamin_N PF00350.23 gi|119720483|ref|YP_920978.1| - 0.0011 19.0 0.0 0.004 17.2 0.0 1.8 1 1 0 1 1 1 1 Dynamin family AAA_23 PF13476.6 gi|119720483|ref|YP_920978.1| - 0.0012 19.4 0.5 0.0022 18.5 0.3 1.4 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119720483|ref|YP_920978.1| - 0.0014 18.6 0.3 0.0028 17.6 0.1 1.6 2 0 0 2 2 2 1 RsgA GTPase SbcCD_C PF13558.6 gi|119720483|ref|YP_920978.1| - 0.011 16.0 0.0 0.2 11.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.9 gi|119720483|ref|YP_920978.1| - 0.012 14.5 0.6 3.5 6.3 0.0 2.9 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|119720483|ref|YP_920978.1| - 0.024 14.2 1.1 0.027 14.1 0.1 1.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|119720483|ref|YP_920978.1| - 0.027 14.9 0.1 0.052 13.9 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|119720483|ref|YP_920978.1| - 0.04 13.6 0.9 0.1 12.3 0.1 1.9 2 1 1 3 3 3 0 AAA domain AAA PF00004.29 gi|119720483|ref|YP_920978.1| - 0.07 13.6 0.1 0.54 10.7 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|119720483|ref|YP_920978.1| - 0.11 12.6 0.2 0.91 9.6 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|119720483|ref|YP_920978.1| - 0.12 11.0 0.0 2.5 6.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|119720483|ref|YP_920978.1| - 0.14 11.7 0.6 0.3 10.7 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GDPD PF03009.17 gi|119720484|ref|YP_920979.1| - 1.8e-35 122.9 0.0 1.8e-33 116.4 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|119720484|ref|YP_920979.1| - 0.00023 21.5 0.2 0.0035 17.8 0.1 2.3 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|119720484|ref|YP_920979.1| - 0.00098 18.7 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylinositol-specific phospholipase C, X domain EAL PF00563.20 gi|119720484|ref|YP_920979.1| - 0.024 14.1 0.0 0.048 13.2 0.0 1.5 1 0 0 1 1 1 0 EAL domain Abhydrolase_3 PF07859.13 gi|119720484|ref|YP_920979.1| - 0.044 13.6 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold PEP_mutase PF13714.6 gi|119720484|ref|YP_920979.1| - 0.12 11.8 0.1 9.2 5.6 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Radical_SAM PF04055.21 gi|119720485|ref|YP_920980.1| - 5.6e-21 75.6 0.0 1e-20 74.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119720485|ref|YP_920980.1| - 0.0022 18.3 0.0 0.0036 17.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119720485|ref|YP_920980.1| - 0.017 15.2 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain ATPase_2 PF01637.18 gi|119720487|ref|YP_920982.1| - 1.8e-13 50.9 0.0 8e-13 48.8 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|119720487|ref|YP_920982.1| - 1.2e-09 38.3 0.0 0.0014 18.7 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|119720487|ref|YP_920982.1| - 3.9e-07 30.4 0.1 2.7e-06 27.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119720487|ref|YP_920982.1| - 8.2e-07 29.6 2.8 9.8e-07 29.3 0.3 2.3 2 2 0 2 2 2 1 AAA ATPase domain PadR PF03551.14 gi|119720487|ref|YP_920982.1| - 0.011 15.7 0.3 0.045 13.7 0.2 2.2 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Whirly PF08536.11 gi|119720487|ref|YP_920982.1| - 0.041 13.7 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 Whirly transcription factor HxlR PF01638.17 gi|119720487|ref|YP_920982.1| - 0.042 13.7 0.3 0.15 12.0 0.1 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix KAP_NTPase PF07693.14 gi|119720487|ref|YP_920982.1| - 0.066 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain Acetyltransf_1 PF00583.25 gi|119720488|ref|YP_920983.1| - 3.3e-17 62.8 0.3 4.2e-17 62.5 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|119720488|ref|YP_920983.1| - 5.2e-11 42.6 0.2 6.7e-11 42.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|119720488|ref|YP_920983.1| - 7.9e-11 42.2 0.4 1e-10 41.8 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119720488|ref|YP_920983.1| - 1.5e-10 40.9 0.3 2.9e-10 40.0 0.3 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|119720488|ref|YP_920983.1| - 2.8e-09 37.3 0.0 3.1e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|119720488|ref|YP_920983.1| - 4.9e-08 33.1 0.2 6.6e-08 32.7 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|119720488|ref|YP_920983.1| - 1.1e-07 32.7 0.1 1.5e-07 32.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|119720488|ref|YP_920983.1| - 6.1e-05 22.7 0.1 0.00011 21.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|119720488|ref|YP_920983.1| - 0.0062 16.3 0.1 0.0082 15.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|119720488|ref|YP_920983.1| - 0.052 13.7 0.1 0.11 12.7 0.1 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Peptidase_C15 PF01470.17 gi|119720489|ref|YP_920984.1| - 2.4e-60 204.2 0.0 2.6e-60 204.0 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase DUF3343 PF11823.8 gi|119720489|ref|YP_920984.1| - 0.098 12.1 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) SBP_bac_1 PF01547.25 gi|119720491|ref|YP_920986.1| - 3.7e-33 115.8 11.6 6.4e-33 115.0 11.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|119720491|ref|YP_920986.1| - 1.6e-23 84.0 2.0 2.3e-23 83.4 2.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119720491|ref|YP_920986.1| - 0.0072 16.1 0.1 3.5 7.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SasG_E PF17041.5 gi|119720491|ref|YP_920986.1| - 0.012 15.6 0.1 0.032 14.2 0.1 1.7 1 0 0 1 1 1 0 E domain DUF5572 PF17733.1 gi|119720491|ref|YP_920986.1| - 0.045 13.6 0.3 0.36 10.7 0.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5572) WXG100 PF06013.12 gi|119720491|ref|YP_920986.1| - 0.32 11.3 0.6 2.9 8.2 0.7 2.2 2 0 0 2 2 2 0 Proteins of 100 residues with WXG BPD_transp_1 PF00528.22 gi|119720492|ref|YP_920987.1| - 6e-21 75.0 24.7 6e-21 75.0 24.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|119720492|ref|YP_920987.1| - 0.14 12.3 0.2 0.4 10.8 0.2 1.8 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters BPD_transp_1 PF00528.22 gi|119720493|ref|YP_920988.1| - 6.9e-23 81.3 16.5 6.9e-23 81.3 16.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Regulator_TrmB PF11495.8 gi|119720494|ref|YP_920989.1| - 2.6e-49 167.5 0.0 4.4e-49 166.8 0.0 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|119720494|ref|YP_920989.1| - 1e-19 70.2 0.4 2.2e-19 69.1 0.4 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119720494|ref|YP_920989.1| - 1.5e-05 24.8 0.2 9.8e-05 22.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|119720494|ref|YP_920989.1| - 0.00031 20.8 0.3 0.00079 19.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|119720494|ref|YP_920989.1| - 0.00032 20.5 0.2 0.0013 18.4 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119720494|ref|YP_920989.1| - 0.0047 16.8 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RuvA_C PF07499.13 gi|119720494|ref|YP_920989.1| - 0.067 13.7 0.7 0.44 11.0 0.1 2.6 2 0 0 2 2 2 0 RuvA, C-terminal domain Rrf2 PF02082.20 gi|119720494|ref|YP_920989.1| - 0.081 13.3 0.1 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator Glycos_transf_1 PF00534.20 gi|119720495|ref|YP_920990.1| - 4.2e-18 65.5 0.1 1.4e-17 63.8 0.1 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720495|ref|YP_920990.1| - 1.2e-10 41.9 0.9 1.9e-10 41.3 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|119720495|ref|YP_920990.1| - 1.5e-08 34.9 0.0 3.7e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Cu-oxidase_2 PF07731.14 gi|119720495|ref|YP_920990.1| - 0.041 13.6 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Multicopper oxidase Aida_N PF08910.10 gi|119720495|ref|YP_920990.1| - 0.15 12.5 0.0 34 4.9 0.0 2.6 3 0 0 3 3 3 0 Aida N-terminus ABC2_membrane PF01061.24 gi|119720496|ref|YP_920991.1| - 9.6e-39 133.0 20.6 1.3e-38 132.5 20.6 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|119720496|ref|YP_920991.1| - 7.6e-19 68.0 19.9 1.1e-18 67.5 19.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|119720496|ref|YP_920991.1| - 9e-08 31.7 16.8 1.6e-07 30.9 16.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3021 PF11457.8 gi|119720496|ref|YP_920991.1| - 6 7.2 14.9 3.5 8.0 2.2 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3021) ABC_tran PF00005.27 gi|119720497|ref|YP_920992.1| - 4.3e-35 121.2 0.0 6.3e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720497|ref|YP_920992.1| - 1.2e-10 41.7 0.0 7.7e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|119720497|ref|YP_920992.1| - 3e-09 37.5 0.0 7.8e-09 36.1 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|119720497|ref|YP_920992.1| - 0.00081 19.2 0.0 1.6 8.4 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|119720497|ref|YP_920992.1| - 0.0026 17.4 0.1 0.005 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|119720497|ref|YP_920992.1| - 0.004 17.6 0.3 0.19 12.1 0.3 2.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|119720497|ref|YP_920992.1| - 0.0095 15.6 0.1 0.03 14.0 0.1 1.8 1 1 1 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|119720497|ref|YP_920992.1| - 0.012 16.1 1.0 0.023 15.2 1.0 1.7 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|119720497|ref|YP_920992.1| - 0.034 13.6 0.0 0.084 12.3 0.0 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|119720497|ref|YP_920992.1| - 0.042 13.8 0.0 0.065 13.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|119720497|ref|YP_920992.1| - 0.069 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119720497|ref|YP_920992.1| - 0.11 12.2 0.2 0.26 11.0 0.0 1.7 3 0 0 3 3 3 0 AAA domain PadR PF03551.14 gi|119720498|ref|YP_920993.1| - 1.9e-16 59.8 0.0 1e-15 57.4 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|119720498|ref|YP_920993.1| - 6.3e-05 23.6 0.0 0.0001 22.9 0.0 1.4 1 1 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|119720498|ref|YP_920993.1| - 0.0023 18.1 0.0 0.0055 16.9 0.0 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|119720498|ref|YP_920993.1| - 0.038 13.8 0.3 0.3 11.0 0.1 2.5 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|119720498|ref|YP_920993.1| - 0.076 13.0 0.0 0.24 11.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix NTP_transf_2 PF01909.23 gi|119720499|ref|YP_920994.1| - 3.5e-06 27.2 0.0 3.5e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720499|ref|YP_920994.1| - 0.00018 21.5 0.0 0.00018 21.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|119720499|ref|YP_920994.1| - 0.013 15.3 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|119720500|ref|YP_920995.1| - 2.4e-11 43.8 0.0 2.6e-11 43.7 0.0 1.0 1 0 0 1 1 1 1 HEPN domain Rubrerythrin PF02915.17 gi|119720501|ref|YP_920996.1| - 1.1e-06 29.1 1.8 2.6e-05 24.6 0.9 2.1 1 1 1 2 2 2 2 Rubrerythrin CK2S PF15011.6 gi|119720501|ref|YP_920996.1| - 0.12 12.3 0.4 0.21 11.5 0.4 1.4 1 0 0 1 1 1 0 Casein Kinase 2 substrate FliG_M PF14841.6 gi|119720501|ref|YP_920996.1| - 0.2 11.9 1.3 0.36 11.1 0.1 2.0 3 0 0 3 3 3 0 FliG middle domain MFS_1 PF07690.16 gi|119720502|ref|YP_920997.1| - 4.6e-43 147.5 52.1 2.3e-26 92.5 19.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|119720502|ref|YP_920997.1| - 3.6e-23 81.8 34.4 1.1e-22 80.3 34.4 1.6 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1_like PF12832.7 gi|119720502|ref|YP_920997.1| - 4.7e-05 22.4 23.1 0.00017 20.6 22.1 2.2 1 1 0 1 1 1 1 MFS_1 like family BT1 PF03092.16 gi|119720502|ref|YP_920997.1| - 0.0018 16.6 0.7 0.0018 16.6 0.7 2.1 2 0 0 2 2 2 1 BT1 family OATP PF03137.20 gi|119720502|ref|YP_920997.1| - 8.9 4.5 15.1 4.3 5.5 1.8 3.2 3 0 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family PhoU PF01895.19 gi|119720503|ref|YP_920998.1| - 1.7e-08 34.8 0.7 1.7e-08 34.8 0.7 1.7 2 0 0 2 2 2 1 PhoU domain PDDEXK_1 PF12705.7 gi|119720505|ref|YP_921000.1| - 1.7e-07 31.5 4.3 2.1e-05 24.6 3.6 2.8 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|119720505|ref|YP_921000.1| - 0.053 13.9 0.0 0.077 13.4 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF4203 PF13886.6 gi|119720506|ref|YP_921001.1| - 0.0015 18.3 29.0 0.0015 18.3 29.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4203) DUF1240 PF06836.12 gi|119720506|ref|YP_921001.1| - 2 9.0 4.6 0.89 10.1 0.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1240) ParBc PF02195.18 gi|119720507|ref|YP_921002.1| - 6.5e-07 29.6 0.0 9.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain PALP PF00291.25 gi|119720508|ref|YP_921003.1| - 2.6e-45 155.1 0.1 4.7e-45 154.2 0.1 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubrerythrin PF02915.17 gi|119720509|ref|YP_921004.1| - 4.8e-29 101.5 0.7 5.8e-29 101.2 0.7 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|119720509|ref|YP_921004.1| - 0.00013 21.9 0.1 0.00031 20.7 0.1 1.7 1 1 0 1 1 1 1 Ferritin-like domain zf-Sec23_Sec24 PF04810.15 gi|119720509|ref|YP_921004.1| - 0.022 14.8 0.6 0.24 11.5 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn-C2H2_12 PF18112.1 gi|119720509|ref|YP_921004.1| - 0.04 14.4 4.2 6 7.4 0.2 3.3 3 0 0 3 3 3 0 Autophagy receptor zinc finger-C2H2 domain ADK_lid PF05191.14 gi|119720509|ref|YP_921004.1| - 0.054 13.5 4.5 0.1 12.6 4.5 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid DZR PF12773.7 gi|119720509|ref|YP_921004.1| - 0.058 13.4 0.2 0.086 12.9 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.20 gi|119720509|ref|YP_921004.1| - 0.063 13.3 4.6 2.6 8.2 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.6 gi|119720509|ref|YP_921004.1| - 0.075 12.5 4.0 2.1 7.8 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|119720509|ref|YP_921004.1| - 0.1 12.7 5.8 2.4 8.3 0.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PhnA_Zn_Ribbon PF08274.12 gi|119720509|ref|YP_921004.1| - 0.11 12.5 3.5 0.14 12.1 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|119720509|ref|YP_921004.1| - 0.15 11.6 3.7 3.7 7.1 0.2 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.14 gi|119720509|ref|YP_921004.1| - 0.16 11.9 4.9 2.5 8.1 0.5 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-RRN7 PF11781.8 gi|119720509|ref|YP_921004.1| - 0.4 10.4 5.7 3.3 7.5 0.7 2.5 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF3797 PF12677.7 gi|119720509|ref|YP_921004.1| - 0.43 10.5 1.9 1 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.6 gi|119720509|ref|YP_921004.1| - 0.69 9.7 4.1 3.9 7.3 4.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF3039 PF11238.8 gi|119720509|ref|YP_921004.1| - 0.71 9.7 4.1 1.5 8.6 4.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) zf-RanBP PF00641.18 gi|119720509|ref|YP_921004.1| - 0.84 9.0 4.6 9.1 5.7 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.10 gi|119720509|ref|YP_921004.1| - 4.5 7.5 6.3 51 4.1 6.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Rad50_zn_hook PF04423.14 gi|119720509|ref|YP_921004.1| - 9 6.2 5.6 31 4.5 0.2 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif HMA PF00403.26 gi|119720510|ref|YP_921005.1| - 9.5e-06 26.0 0.2 1.8e-05 25.1 0.2 1.5 1 0 0 1 1 1 1 Heavy-metal-associated domain TrmO PF01980.16 gi|119720511|ref|YP_921006.1| - 2.3e-13 50.4 0.0 2.9e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O PIN PF01850.21 gi|119720512|ref|YP_921007.1| - 1.6e-12 48.0 0.0 1.9e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain RNase_Zc3h12a PF11977.8 gi|119720512|ref|YP_921007.1| - 0.04 13.7 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain MazE_antitoxin PF04014.18 gi|119720513|ref|YP_921008.1| - 1.2e-11 44.2 1.4 1.8e-11 43.7 1.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|119720513|ref|YP_921008.1| - 0.015 15.7 0.0 0.019 15.4 0.0 1.1 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin AMP-binding PF00501.28 gi|119720514|ref|YP_921009.1| - 2.1e-40 138.6 0.0 9.7e-24 83.7 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme ACAS_N PF16177.5 gi|119720514|ref|YP_921009.1| - 7.8e-14 51.3 0.1 7.8e-14 51.3 0.1 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|119720514|ref|YP_921009.1| - 8e-07 29.9 2.9 1.4e-06 29.2 2.1 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Lactamase_B_3 PF13483.6 gi|119720515|ref|YP_921010.1| - 3.4e-11 43.3 0.0 4.5e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|119720515|ref|YP_921010.1| - 9.8e-07 28.5 0.0 1.4e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AIRS_C PF02769.22 gi|119720516|ref|YP_921011.1| - 4e-22 79.0 0.0 6.1e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|119720516|ref|YP_921011.1| - 2e-17 63.6 0.4 4.1e-17 62.6 0.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AdoMet_Synthase PF01941.19 gi|119720516|ref|YP_921011.1| - 0.16 10.7 0.0 0.23 10.2 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) HupF_HypC PF01455.18 gi|119720517|ref|YP_921012.1| - 1.6e-15 57.0 0.2 2.3e-15 56.5 0.2 1.3 1 0 0 1 1 1 1 HupF/HypC family PCB_OB PF17092.5 gi|119720517|ref|YP_921012.1| - 0.13 13.0 2.3 6.7 7.5 0.1 2.4 1 1 1 2 2 2 0 Penicillin-binding protein OB-like domain HypD PF01924.16 gi|119720518|ref|YP_921013.1| - 2.2e-121 405.3 0.0 2.6e-121 405.0 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.6 gi|119720518|ref|YP_921013.1| - 0.02 14.8 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 zf-RING of BARD1-type protein FGGY_N PF00370.21 gi|119720519|ref|YP_921014.1| - 3.6e-39 134.8 0.0 5e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|119720519|ref|YP_921014.1| - 4e-29 101.8 0.0 5.6e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain RibD_C PF01872.17 gi|119720519|ref|YP_921014.1| - 0.2 11.5 0.0 0.42 10.4 0.0 1.4 1 0 0 1 1 1 0 RibD C-terminal domain BPD_transp_1 PF00528.22 gi|119720520|ref|YP_921015.1| - 2.9e-20 72.8 17.2 2.9e-20 72.8 17.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119720521|ref|YP_921016.1| - 2.4e-25 89.3 16.1 2.4e-25 89.3 16.1 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|119720522|ref|YP_921017.1| - 1.9e-25 90.3 3.3 2.5e-25 89.8 3.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119720522|ref|YP_921017.1| - 5.1e-19 69.4 7.9 7.9e-19 68.7 7.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DHDPS PF00701.22 gi|119720523|ref|YP_921018.1| - 1.9e-53 181.1 0.0 2.1e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family UVR PF02151.19 gi|119720523|ref|YP_921018.1| - 0.021 14.5 0.3 0.039 13.7 0.3 1.5 1 0 0 1 1 1 0 UvrB/uvrC motif DeoRC PF00455.22 gi|119720523|ref|YP_921018.1| - 0.18 11.7 0.2 0.27 11.2 0.2 1.2 1 0 0 1 1 1 0 DeoR C terminal sensor domain HTH_10 PF04967.12 gi|119720524|ref|YP_921019.1| - 3.3e-21 74.8 0.0 6.8e-21 73.8 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|119720524|ref|YP_921019.1| - 0.0019 17.6 0.1 0.0073 15.8 0.1 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|119720524|ref|YP_921019.1| - 0.0029 17.1 1.2 0.012 15.2 0.1 2.7 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|119720524|ref|YP_921019.1| - 0.003 17.4 0.0 0.041 13.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Mga PF05043.13 gi|119720524|ref|YP_921019.1| - 0.017 15.7 1.9 0.064 13.8 0.1 2.5 2 1 1 3 3 3 0 Mga helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|119720524|ref|YP_921019.1| - 0.033 13.9 0.4 8.8 6.1 0.2 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 ENT PF03735.14 gi|119720524|ref|YP_921019.1| - 0.039 14.0 0.5 0.18 11.9 0.1 2.2 3 0 0 3 3 3 0 ENT domain HTH_6 PF01418.17 gi|119720524|ref|YP_921019.1| - 0.074 13.0 0.0 7.5 6.6 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain, rpiR family FGGY_N PF00370.21 gi|119720525|ref|YP_921020.1| - 2.9e-50 171.1 0.0 4.9e-50 170.4 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|119720525|ref|YP_921020.1| - 1.1e-30 106.8 0.0 1.6e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Hexokinase_1 PF00349.21 gi|119720525|ref|YP_921020.1| - 0.0054 16.7 0.0 0.0095 15.9 0.0 1.3 1 0 0 1 1 1 1 Hexokinase Raco_middle PF17651.1 gi|119720525|ref|YP_921020.1| - 0.077 12.7 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 RACo middle region 2-Hacid_dh_C PF02826.19 gi|119720526|ref|YP_921021.1| - 4e-65 218.5 0.0 6.1e-65 217.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|119720526|ref|YP_921021.1| - 1.4e-23 83.0 0.1 1.9e-23 82.6 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|119720526|ref|YP_921021.1| - 5.6e-05 23.3 0.5 0.00027 21.0 0.3 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|119720526|ref|YP_921021.1| - 0.00015 22.0 0.2 0.00034 20.8 0.1 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|119720526|ref|YP_921021.1| - 0.0093 15.5 0.1 0.02 14.4 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|119720526|ref|YP_921021.1| - 0.0097 16.3 0.1 0.17 12.3 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|119720526|ref|YP_921021.1| - 0.016 15.8 0.1 0.11 13.1 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|119720526|ref|YP_921021.1| - 0.053 13.6 0.1 0.18 11.8 0.0 1.9 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|119720526|ref|YP_921021.1| - 0.17 12.1 0.9 1.6 9.0 0.2 2.7 2 2 1 3 3 3 0 Saccharopine dehydrogenase NADP binding domain HpcH_HpaI PF03328.14 gi|119720527|ref|YP_921022.1| - 2.2e-39 134.8 0.0 2.8e-39 134.5 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PK PF00224.21 gi|119720527|ref|YP_921022.1| - 0.08 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Pyruvate kinase, barrel domain SBP_bac_11 PF13531.6 gi|119720528|ref|YP_921023.1| - 9e-08 32.1 0.0 1.1e-07 31.8 0.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DrsE PF02635.15 gi|119720529|ref|YP_921024.1| - 9.6e-10 38.9 0.0 1.1e-09 38.7 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|119720529|ref|YP_921024.1| - 0.0067 16.5 0.0 0.0092 16.1 0.0 1.1 1 0 0 1 1 1 1 DsrH like protein DrsE_2 PF13686.6 gi|119720529|ref|YP_921024.1| - 0.026 14.4 0.0 0.029 14.3 0.0 1.2 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family Protoglobin PF11563.8 gi|119720530|ref|YP_921025.1| - 2.1e-09 37.5 0.0 3e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Protoglobin Glyco_hydro_38N PF01074.22 gi|119720531|ref|YP_921026.1| - 9.2e-70 235.3 0.0 1.3e-69 234.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|119720531|ref|YP_921026.1| - 2.4e-27 96.4 0.0 6.6e-27 95.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|119720531|ref|YP_921026.1| - 1.2e-21 76.6 0.2 3.5e-21 75.1 0.2 1.7 2 0 0 2 2 2 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|119720531|ref|YP_921026.1| - 2.1e-06 27.8 0.0 5.1e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Bax1-I PF01027.20 gi|119720532|ref|YP_921027.1| - 6.4 6.5 14.7 7.5 6.3 14.7 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 NTPase_I-T PF01931.18 gi|119720533|ref|YP_921028.1| - 1.9e-53 180.6 0.1 2.2e-53 180.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Molybdopterin PF00384.22 gi|119720534|ref|YP_921029.1| - 9.7e-48 163.2 0.0 2.4e-47 161.9 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|119720534|ref|YP_921029.1| - 7.1e-18 64.7 0.0 1.8e-17 63.4 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|119720534|ref|YP_921029.1| - 0.00012 22.0 0.0 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain V4R PF02830.18 gi|119720535|ref|YP_921030.1| - 2.6e-07 30.5 0.0 5.2e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 V4R domain ACT PF01842.25 gi|119720535|ref|YP_921030.1| - 0.043 13.6 0.2 0.081 12.7 0.2 1.5 1 0 0 1 1 1 0 ACT domain Hydrolase_3 PF08282.12 gi|119720536|ref|YP_921031.1| - 3e-23 82.9 0.0 2.7e-13 50.3 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|119720536|ref|YP_921031.1| - 0.0002 21.8 2.0 0.2 12.0 0.0 2.7 2 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|119720536|ref|YP_921031.1| - 0.00043 19.5 0.0 0.00085 18.5 0.0 1.4 2 0 0 2 2 2 1 Trehalose-phosphatase Hydrolase PF00702.26 gi|119720536|ref|YP_921031.1| - 0.0015 18.9 0.5 0.12 12.7 0.3 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|119720536|ref|YP_921031.1| - 0.0065 16.0 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase ABC_tran PF00005.27 gi|119720537|ref|YP_921032.1| - 1.5e-37 129.1 0.0 2.1e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119720537|ref|YP_921032.1| - 1.3e-20 73.7 0.2 2.2e-20 72.9 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|119720537|ref|YP_921032.1| - 2.9e-06 27.3 0.7 0.012 15.4 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119720537|ref|YP_921032.1| - 0.00027 21.2 0.8 0.0027 18.0 0.8 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720537|ref|YP_921032.1| - 0.0006 20.2 2.0 0.0012 19.3 2.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119720537|ref|YP_921032.1| - 0.0012 18.5 0.1 0.0021 17.8 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720537|ref|YP_921032.1| - 0.0056 16.1 0.0 0.038 13.4 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|119720537|ref|YP_921032.1| - 0.0076 16.7 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|119720537|ref|YP_921032.1| - 0.03 13.7 0.0 0.064 12.6 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|119720537|ref|YP_921032.1| - 0.036 13.3 0.1 0.055 12.7 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|119720537|ref|YP_921032.1| - 0.042 13.6 0.1 0.08 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|119720537|ref|YP_921032.1| - 0.043 13.2 0.0 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 gi|119720537|ref|YP_921032.1| - 0.068 13.3 0.3 0.14 12.3 0.3 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119720537|ref|YP_921032.1| - 0.087 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|119720537|ref|YP_921032.1| - 0.11 12.1 0.1 0.18 11.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|119720537|ref|YP_921032.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|119720537|ref|YP_921032.1| - 0.14 12.6 0.0 0.2 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|119720537|ref|YP_921032.1| - 0.15 11.8 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 gi|119720537|ref|YP_921032.1| - 0.15 11.9 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|119720537|ref|YP_921032.1| - 0.16 11.9 0.1 0.29 11.2 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|119720537|ref|YP_921032.1| - 0.17 10.9 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|119720537|ref|YP_921032.1| - 0.21 10.8 0.0 0.34 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|119720538|ref|YP_921033.1| - 6.3e-26 91.5 0.0 8.6e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119720538|ref|YP_921033.1| - 9.8e-20 70.9 0.1 1.7e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|119720538|ref|YP_921033.1| - 4e-08 33.0 0.1 2e-07 30.7 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|119720538|ref|YP_921033.1| - 1.2e-06 28.5 1.1 0.002 18.0 0.0 2.4 1 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119720538|ref|YP_921033.1| - 0.00033 20.9 0.1 0.0016 18.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119720538|ref|YP_921033.1| - 0.0025 17.5 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119720538|ref|YP_921033.1| - 0.0047 17.3 0.4 0.011 16.2 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|119720538|ref|YP_921033.1| - 0.046 12.9 0.0 0.061 12.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.17 gi|119720538|ref|YP_921033.1| - 0.1 12.3 0.2 13 5.5 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase PF06745.13 gi|119720538|ref|YP_921033.1| - 0.17 11.2 0.7 9.5 5.5 0.1 2.1 2 0 0 2 2 2 0 KaiC NIR_SIR PF01077.22 gi|119720538|ref|YP_921033.1| - 0.18 11.3 0.0 0.51 9.8 0.0 1.7 2 0 0 2 2 2 0 Nitrite and sulphite reductase 4Fe-4S domain BPD_transp_1 PF00528.22 gi|119720539|ref|YP_921034.1| - 1e-24 87.3 10.2 1e-24 87.3 10.2 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119720540|ref|YP_921035.1| - 2.3e-37 128.5 8.7 2.3e-37 128.5 8.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component MlaE PF02405.16 gi|119720540|ref|YP_921035.1| - 9.8 5.8 13.8 0.031 13.9 2.5 2.5 3 1 0 3 3 3 0 Permease MlaE SBP_bac_5 PF00496.22 gi|119720541|ref|YP_921036.1| - 2.7e-89 299.8 4.9 3.4e-89 299.4 4.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.12 gi|119720541|ref|YP_921036.1| - 0.022 14.3 0.1 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system SieB PF14163.6 gi|119720541|ref|YP_921036.1| - 0.058 12.9 0.0 0.19 11.2 0.0 1.9 2 0 0 2 2 2 0 Super-infection exclusion protein B MFS_1 PF07690.16 gi|119720542|ref|YP_921037.1| - 4.6e-14 52.1 41.1 1.6e-13 50.3 38.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|119720542|ref|YP_921037.1| - 0.0054 15.3 23.6 0.34 9.4 8.2 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein AA_permease_2 PF13520.6 gi|119720543|ref|YP_921038.1| - 1.2e-55 189.1 37.6 1.8e-55 188.5 37.6 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|119720543|ref|YP_921038.1| - 9.9e-36 123.3 42.2 2.7e-35 121.9 42.2 1.7 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|119720543|ref|YP_921038.1| - 0.0024 16.8 11.2 0.026 13.4 11.2 2.4 1 1 0 1 1 1 1 Spore germination protein MFS_1 PF07690.16 gi|119720544|ref|YP_921039.1| - 5.3e-52 176.9 81.2 6.1e-40 137.2 56.1 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|119720544|ref|YP_921039.1| - 2.9e-09 36.3 11.2 2.9e-09 36.3 11.2 2.6 3 0 0 3 3 3 1 Sugar (and other) transporter MarC PF01914.17 gi|119720545|ref|YP_921040.1| - 5.6e-37 127.1 12.4 6.9e-37 126.8 12.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein Acetyltransf_1 PF00583.25 gi|119720547|ref|YP_921042.1| - 5.2e-16 58.9 0.1 2e-15 57.0 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|119720547|ref|YP_921042.1| - 1.6e-13 50.7 0.0 1e-11 44.9 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|119720547|ref|YP_921042.1| - 8.6e-11 42.1 0.1 2e-10 41.0 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|119720547|ref|YP_921042.1| - 0.00021 21.5 0.1 0.00045 20.4 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119720547|ref|YP_921042.1| - 0.0023 17.9 0.0 0.0046 16.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|119720547|ref|YP_921042.1| - 0.063 13.4 0.0 0.33 11.0 0.0 2.2 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|119720547|ref|YP_921042.1| - 0.073 13.2 0.0 0.52 10.4 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain TatC PF00902.18 gi|119720548|ref|YP_921043.1| - 4e-41 141.1 20.0 4.7e-41 140.9 20.0 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DNA_primase_S PF01896.19 gi|119720549|ref|YP_921044.1| - 0.15 12.0 0.2 3.2 7.8 0.1 2.2 1 1 1 2 2 2 0 DNA primase small subunit YjeF_N PF03853.15 gi|119720550|ref|YP_921045.1| - 5.1e-50 169.7 0.5 8e-50 169.1 0.5 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus Carb_kinase PF01256.17 gi|119720550|ref|YP_921045.1| - 3.3e-49 167.6 3.4 8.6e-49 166.2 0.2 2.0 2 0 0 2 2 2 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|119720550|ref|YP_921045.1| - 4.2e-06 26.3 0.0 7.1e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|119720550|ref|YP_921045.1| - 0.00047 19.6 1.6 0.0013 18.1 0.1 2.0 2 0 0 2 2 2 1 pfkB family carbohydrate kinase HK PF02110.15 gi|119720550|ref|YP_921045.1| - 0.0011 18.4 0.1 0.0019 17.6 0.1 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DeoC PF01791.9 gi|119720551|ref|YP_921046.1| - 1.1e-33 116.8 0.0 1.3e-33 116.6 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.14 gi|119720551|ref|YP_921046.1| - 0.041 13.2 0.1 0.07 12.4 0.1 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG OMPdecase PF00215.24 gi|119720551|ref|YP_921046.1| - 0.046 13.3 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PfkB PF00294.24 gi|119720552|ref|YP_921047.1| - 1.9e-57 194.9 0.4 2.3e-57 194.6 0.4 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|119720552|ref|YP_921047.1| - 9.7e-07 28.4 0.0 1.5e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase VIT1 PF01988.19 gi|119720553|ref|YP_921048.1| - 1.7e-08 34.6 28.6 1.2e-05 25.3 11.6 2.9 2 1 1 3 3 3 2 VIT family Rubrerythrin PF02915.17 gi|119720553|ref|YP_921048.1| - 6.9e-06 26.5 3.7 8.5e-05 23.0 3.5 2.1 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|119720553|ref|YP_921048.1| - 0.0017 18.6 0.3 1.2 9.3 0.3 2.7 2 1 0 2 2 2 2 Ferritin-like domain DUF1129 PF06570.11 gi|119720553|ref|YP_921048.1| - 0.013 15.0 0.3 0.019 14.5 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF4190 PF13828.6 gi|119720553|ref|YP_921048.1| - 0.044 13.6 1.1 0.044 13.6 1.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4190) CxxCxxCC PF03692.15 gi|119720554|ref|YP_921049.1| - 1e-16 61.4 1.3 1.4e-16 60.9 1.3 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain PMBR PF09373.10 gi|119720554|ref|YP_921049.1| - 0.053 13.7 0.1 0.17 12.1 0.0 1.9 2 0 0 2 2 2 0 Pseudomurein-binding repeat Nitroreductase PF00881.24 gi|119720555|ref|YP_921050.1| - 9.6e-29 100.6 0.2 1.5e-18 67.4 0.2 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|119720555|ref|YP_921050.1| - 1.1e-10 41.5 0.0 0.00011 21.8 0.0 3.0 1 1 1 3 3 3 3 Putative TM nitroreductase MFS_1 PF07690.16 gi|119720556|ref|YP_921051.1| - 2.9e-42 144.9 27.3 5.8e-25 88.0 3.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|119720556|ref|YP_921051.1| - 4.9e-12 45.4 11.2 1.3e-05 24.3 0.2 2.1 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|119720556|ref|YP_921051.1| - 1.7e-09 37.1 12.4 0.00026 20.0 5.9 3.0 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|119720556|ref|YP_921051.1| - 9.7e-09 34.3 17.8 3.4e-08 32.5 17.8 1.8 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.13 gi|119720556|ref|YP_921051.1| - 1e-07 30.8 13.1 2.4e-07 29.5 13.1 1.6 1 1 0 1 1 1 1 Transmembrane secretion effector LacY_symp PF01306.19 gi|119720556|ref|YP_921051.1| - 8.7e-07 28.1 0.2 8.7e-07 28.1 0.2 3.0 1 1 2 3 3 3 1 LacY proton/sugar symporter ATG22 PF11700.8 gi|119720556|ref|YP_921051.1| - 0.013 14.2 13.1 0.6 8.7 7.0 2.7 2 2 0 2 2 2 0 Vacuole effluxer Atg22 like PMT_4TMC PF16192.5 gi|119720556|ref|YP_921051.1| - 0.016 14.8 0.1 0.051 13.1 0.1 1.8 1 0 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase PTR2 PF00854.21 gi|119720556|ref|YP_921051.1| - 0.49 9.2 9.9 0.026 13.4 2.0 2.1 2 0 0 2 2 2 0 POT family Transgly_assoc PF04226.13 gi|119720556|ref|YP_921051.1| - 0.58 10.5 9.1 0.086 13.1 2.6 2.8 2 0 0 2 2 2 0 Transglycosylase associated protein Fucose_iso_C PF02952.17 gi|119720557|ref|YP_921052.1| - 0.0065 16.2 0.0 0.11 12.2 0.0 2.4 2 1 0 2 2 2 1 L-fucose isomerase, C-terminal domain Arabinose_Isome PF02610.15 gi|119720557|ref|YP_921052.1| - 0.081 12.1 0.0 0.15 11.3 0.0 1.4 1 1 0 1 1 1 0 L-arabinose isomerase Rubrerythrin PF02915.17 gi|119720558|ref|YP_921053.1| - 4.4e-09 36.8 0.2 5.1e-09 36.7 0.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2202 PF09968.9 gi|119720558|ref|YP_921053.1| - 0.0012 18.7 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DUF2383 PF09537.10 gi|119720558|ref|YP_921053.1| - 0.0059 16.9 0.0 0.0084 16.4 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 gi|119720558|ref|YP_921053.1| - 0.015 15.1 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 HTH_20 PF12840.7 gi|119720558|ref|YP_921053.1| - 0.017 15.2 0.1 0.31 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain RHH_4 PF13467.6 gi|119720558|ref|YP_921053.1| - 0.029 14.3 0.0 0.55 10.2 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain Ferritin PF00210.24 gi|119720558|ref|YP_921053.1| - 0.038 13.9 0.1 0.045 13.7 0.1 1.2 1 0 0 1 1 1 0 Ferritin-like domain NUDIX PF00293.28 gi|119720559|ref|YP_921054.1| - 2.8e-23 82.4 0.0 3.4e-23 82.1 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|119720559|ref|YP_921054.1| - 0.00045 20.2 0.0 0.00064 19.7 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain Rhomboid PF01694.22 gi|119720561|ref|YP_921056.1| - 1.2e-36 125.9 17.3 1.2e-36 125.9 17.3 1.9 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|119720561|ref|YP_921056.1| - 0.0086 16.6 0.4 0.0086 16.6 0.4 2.7 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) tRNA-synt_1b PF00579.25 gi|119720562|ref|YP_921057.1| - 1.1e-33 116.8 0.0 4.4e-21 75.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Inos-1-P_synth PF01658.17 gi|119720563|ref|YP_921058.1| - 2e-21 76.3 0.0 3.2e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|119720563|ref|YP_921058.1| - 0.00075 19.0 0.0 0.0012 18.3 0.0 1.4 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase DUF2192 PF09958.9 gi|119720564|ref|YP_921059.1| - 4.5e-58 196.5 0.0 6.5e-58 196.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) MauJ PF17419.2 gi|119720564|ref|YP_921059.1| - 0.026 14.0 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 0 Methylamine utilization protein MauJ Cyclase PF04199.13 gi|119720566|ref|YP_921061.1| - 3.8e-35 121.1 0.0 4.6e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Aminotran_1_2 PF00155.21 gi|119720567|ref|YP_921062.1| - 3.1e-67 227.3 0.0 3.5e-67 227.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|119720567|ref|YP_921062.1| - 7e-09 35.5 0.0 9.6e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.21 gi|119720567|ref|YP_921062.1| - 0.0014 19.0 0.1 0.39 11.1 0.0 2.5 2 0 0 2 2 2 2 Radical SAM superfamily Cys_Met_Meta_PP PF01053.20 gi|119720567|ref|YP_921062.1| - 0.003 16.1 0.0 0.0043 15.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|119720567|ref|YP_921062.1| - 0.035 13.4 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase HHH PF00633.23 gi|119720567|ref|YP_921062.1| - 0.06 13.2 0.0 0.29 11.1 0.0 2.2 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF1611_N PF17396.2 gi|119720567|ref|YP_921062.1| - 0.093 13.0 0.0 0.68 10.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain DUF1097 PF06496.11 gi|119720568|ref|YP_921063.1| - 5.2e-27 94.8 16.0 5.8e-27 94.6 16.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1097) DHDPS PF00701.22 gi|119720569|ref|YP_921064.1| - 9.4e-70 234.6 0.0 1.1e-69 234.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AIRS_C PF02769.22 gi|119720570|ref|YP_921065.1| - 3.9e-29 101.8 2.4 9.1e-29 100.6 2.4 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|119720570|ref|YP_921065.1| - 9.4e-14 51.8 0.6 2.2e-13 50.7 0.6 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ECF-ribofla_trS PF07155.12 gi|119720571|ref|YP_921066.1| - 1.5e-43 148.7 12.4 1.8e-43 148.5 12.4 1.0 1 0 0 1 1 1 1 ECF-type riboflavin transporter, S component ECF_trnsprt PF12822.7 gi|119720571|ref|YP_921066.1| - 2.9e-08 34.0 13.3 4.9e-08 33.3 13.3 1.3 1 1 0 1 1 1 1 ECF transporter, substrate-specific component 5TM-5TMR_LYT PF07694.12 gi|119720571|ref|YP_921066.1| - 0.0022 17.5 11.7 0.0033 17.0 11.6 1.4 1 1 0 1 1 1 1 5TMR of 5TMR-LYT Thia_YuaJ PF09515.10 gi|119720571|ref|YP_921066.1| - 2.5 8.1 10.7 3 7.8 3.1 2.3 1 1 1 2 2 2 0 Thiamine transporter protein (Thia_YuaJ) YbjM PF11045.8 gi|119720571|ref|YP_921066.1| - 3.7 7.7 7.2 0.37 11.0 2.2 1.8 2 1 0 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae DUF4730 PF15873.5 gi|119720571|ref|YP_921066.1| - 5 7.5 9.6 0.21 11.9 1.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4730) Acid_PPase PF12689.7 gi|119720572|ref|YP_921067.1| - 4.1e-13 49.5 0.0 5.3e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Acid Phosphatase Hydrolase PF00702.26 gi|119720572|ref|YP_921067.1| - 2.8e-11 44.1 0.0 7.4e-08 32.9 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|119720572|ref|YP_921067.1| - 1.2e-08 35.3 0.0 1.1e-07 32.1 0.0 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|119720572|ref|YP_921067.1| - 0.00012 21.8 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.6 gi|119720572|ref|YP_921067.1| - 0.009 16.1 0.0 0.018 15.1 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|119720572|ref|YP_921067.1| - 0.022 14.3 0.0 0.048 13.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2608) HAD PF12710.7 gi|119720572|ref|YP_921067.1| - 0.1 13.0 1.0 1.7 9.0 0.0 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Aldo_ket_red PF00248.21 gi|119720573|ref|YP_921068.1| - 1.3e-62 211.7 0.0 1.5e-62 211.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RNA_pol_Rpb6 PF01192.22 gi|119720573|ref|YP_921068.1| - 0.017 15.0 0.0 0.047 13.6 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase Rpb6 Ribul_P_3_epim PF00834.19 gi|119720573|ref|YP_921068.1| - 0.021 14.2 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Cellulase PF00150.18 gi|119720575|ref|YP_921070.1| - 7.7e-07 28.8 0.0 1.3e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42 PF02449.15 gi|119720575|ref|YP_921070.1| - 2.5e-06 27.1 0.1 0.042 13.2 0.1 2.3 2 0 0 2 2 2 2 Beta-galactosidase DUF4434 PF14488.6 gi|119720575|ref|YP_921070.1| - 0.00016 21.7 0.0 0.00038 20.5 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4434) Glyco_hydro_42C PF08533.10 gi|119720575|ref|YP_921070.1| - 0.00066 19.3 0.2 0.0022 17.7 0.0 1.9 2 0 0 2 2 2 1 Beta-galactosidase C-terminal domain LBP_C PF17386.2 gi|119720575|ref|YP_921070.1| - 0.0014 18.5 0.1 0.0027 17.6 0.1 1.4 1 0 0 1 1 1 1 Lacto-N-biose phosphorylase C-terminal domain Glyco_hydro_72 PF03198.14 gi|119720575|ref|YP_921070.1| - 0.15 11.3 0.0 3.7 6.7 0.0 2.1 2 0 0 2 2 2 0 Glucanosyltransferase RHH_1 PF01402.21 gi|119720577|ref|YP_921072.1| - 3.9e-06 26.6 0.2 1.4e-05 24.8 0.0 1.9 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family VAPB_antitox PF02697.14 gi|119720577|ref|YP_921072.1| - 0.00035 21.3 0.2 0.00041 21.1 0.2 1.2 1 0 0 1 1 1 1 Putative antitoxin XH PF03469.14 gi|119720577|ref|YP_921072.1| - 0.044 13.7 0.1 0.055 13.4 0.1 1.2 1 0 0 1 1 1 0 XH domain Glyco_hydro_1 PF00232.18 gi|119720578|ref|YP_921073.1| - 6.9e-56 189.6 0.1 1.7e-43 148.7 0.0 2.7 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 SBP_bac_5 PF00496.22 gi|119720579|ref|YP_921074.1| - 1e-66 225.4 7.4 1.6e-66 224.8 7.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ECSCR PF15820.5 gi|119720579|ref|YP_921074.1| - 0.024 14.4 0.1 0.083 12.7 0.0 1.9 2 0 0 2 2 2 0 Endothelial cell-specific chemotaxis regulator DUF4366 PF14283.6 gi|119720579|ref|YP_921074.1| - 0.082 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF5527 PF17665.1 gi|119720579|ref|YP_921074.1| - 0.089 12.3 1.5 0.18 11.4 1.5 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5527) MGC-24 PF05283.11 gi|119720579|ref|YP_921074.1| - 0.22 12.0 0.2 0.38 11.2 0.2 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin TMEM119 PF15724.5 gi|119720579|ref|YP_921074.1| - 2.4 8.2 5.6 3.8 7.5 5.6 1.2 1 0 0 1 1 1 0 TMEM119 family BPD_transp_1 PF00528.22 gi|119720580|ref|YP_921075.1| - 2.2e-39 135.1 8.2 2.2e-39 135.1 8.2 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Chs7 PF12271.8 gi|119720580|ref|YP_921075.1| - 0.054 12.9 0.1 0.054 12.9 0.1 1.7 2 0 0 2 2 2 0 Chitin synthase export chaperone BPD_transp_1 PF00528.22 gi|119720581|ref|YP_921076.1| - 1.7e-22 80.1 19.3 1.7e-22 80.1 19.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|119720581|ref|YP_921076.1| - 5.9e-05 23.0 0.5 5.9e-05 23.0 0.5 3.2 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|119720582|ref|YP_921077.1| - 1.1e-23 84.2 0.0 1.5e-23 83.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119720582|ref|YP_921077.1| - 3.6e-18 65.8 0.1 6.5e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.6 gi|119720582|ref|YP_921077.1| - 6e-05 22.7 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|119720582|ref|YP_921077.1| - 0.00041 20.3 0.0 0.00078 19.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|119720582|ref|YP_921077.1| - 0.0013 18.8 0.0 0.0023 18.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|119720582|ref|YP_921077.1| - 0.0037 17.5 0.2 0.013 15.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119720582|ref|YP_921077.1| - 0.01 15.3 0.2 0.84 9.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720582|ref|YP_921077.1| - 0.012 16.0 0.2 0.024 15.0 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 gi|119720582|ref|YP_921077.1| - 0.022 14.8 0.1 0.041 14.0 0.1 1.4 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.6 gi|119720582|ref|YP_921077.1| - 0.026 15.0 0.1 0.048 14.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 gi|119720582|ref|YP_921077.1| - 0.041 13.2 0.0 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 Septin NACHT PF05729.12 gi|119720582|ref|YP_921077.1| - 0.045 13.7 0.1 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain MobB PF03205.14 gi|119720582|ref|YP_921077.1| - 0.046 13.6 0.0 0.087 12.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|119720582|ref|YP_921077.1| - 0.046 13.9 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|119720582|ref|YP_921077.1| - 0.05 12.8 0.1 0.071 12.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_ATPase PF09818.9 gi|119720582|ref|YP_921077.1| - 0.071 11.9 1.3 0.89 8.3 0.1 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.19 gi|119720582|ref|YP_921077.1| - 0.076 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_21 PF13304.6 gi|119720582|ref|YP_921077.1| - 0.081 12.7 3.4 1.1 9.0 0.4 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system FtsK_SpoIIIE PF01580.18 gi|119720582|ref|YP_921077.1| - 0.094 12.0 0.1 0.16 11.3 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family Proteasome PF00227.26 gi|119720582|ref|YP_921077.1| - 0.16 11.4 0.1 0.66 9.4 0.0 1.8 2 0 0 2 2 2 0 Proteasome subunit ABC_tran PF00005.27 gi|119720583|ref|YP_921078.1| - 4.7e-31 108.1 0.0 7.1e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119720583|ref|YP_921078.1| - 3.3e-14 53.2 0.2 5.9e-14 52.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|119720583|ref|YP_921078.1| - 1.7e-05 25.1 0.1 0.00011 22.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720583|ref|YP_921078.1| - 0.00023 21.6 0.0 0.00035 21.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|119720583|ref|YP_921078.1| - 0.00089 19.0 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_15 PF13175.6 gi|119720583|ref|YP_921078.1| - 0.00092 19.0 0.1 0.0013 18.6 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119720583|ref|YP_921078.1| - 0.0015 18.3 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|119720583|ref|YP_921078.1| - 0.0019 18.1 0.3 0.077 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720583|ref|YP_921078.1| - 0.0027 17.2 0.0 0.0075 15.7 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|119720583|ref|YP_921078.1| - 0.008 15.6 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|119720583|ref|YP_921078.1| - 0.01 16.3 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119720583|ref|YP_921078.1| - 0.011 16.1 0.1 0.69 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|119720583|ref|YP_921078.1| - 0.026 14.5 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE G-alpha PF00503.20 gi|119720583|ref|YP_921078.1| - 0.03 13.5 0.0 0.043 13.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.6 gi|119720583|ref|YP_921078.1| - 0.034 13.9 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|119720583|ref|YP_921078.1| - 0.041 13.1 0.0 0.078 12.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|119720583|ref|YP_921078.1| - 0.041 13.9 0.1 0.073 13.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119720583|ref|YP_921078.1| - 0.052 14.0 0.0 0.087 13.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|119720583|ref|YP_921078.1| - 0.059 13.8 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|119720583|ref|YP_921078.1| - 0.081 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 gi|119720583|ref|YP_921078.1| - 0.082 13.0 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain TIP49 PF06068.13 gi|119720583|ref|YP_921078.1| - 0.088 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_30 PF13604.6 gi|119720583|ref|YP_921078.1| - 0.11 12.3 0.0 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|119720583|ref|YP_921078.1| - 0.12 12.3 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|119720583|ref|YP_921078.1| - 0.17 11.1 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin TniB PF05621.11 gi|119720583|ref|YP_921078.1| - 0.18 11.2 0.0 11 5.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein Glyco_hydro_12 PF01670.16 gi|119720584|ref|YP_921079.1| - 2.5e-20 73.4 0.0 3.5e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 HEPN PF05168.14 gi|119720585|ref|YP_921080.1| - 4.5e-09 36.5 2.5 7.8e-09 35.7 2.5 1.4 1 0 0 1 1 1 1 HEPN domain TPR_10 PF13374.6 gi|119720585|ref|YP_921080.1| - 0.049 13.5 0.7 23 5.0 0.0 3.2 2 1 0 2 2 2 0 Tetratricopeptide repeat MFS_1 PF07690.16 gi|119720586|ref|YP_921081.1| - 2.3e-38 132.0 51.7 3.4e-26 92.0 31.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|119720586|ref|YP_921081.1| - 2.9e-34 118.7 15.9 7.4e-34 117.4 15.9 1.8 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|119720586|ref|YP_921081.1| - 0.034 13.5 36.0 0.31 10.3 11.6 2.1 1 1 1 2 2 2 0 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|119720586|ref|YP_921081.1| - 0.1 10.8 2.1 0.76 8.0 0.3 2.5 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 gi|119720586|ref|YP_921081.1| - 0.13 11.1 7.6 4.4 6.0 6.3 2.4 2 1 0 2 2 2 0 MFS_1 like family Cation_efflux PF01545.21 gi|119720587|ref|YP_921082.1| - 7.1e-41 140.1 15.0 8.9e-41 139.8 15.0 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|119720587|ref|YP_921082.1| - 1.9e-34 117.6 10.1 2.1e-14 53.4 0.1 3.2 3 0 0 3 3 3 3 Dimerisation domain of Zinc Transporter DUF5134 PF17197.4 gi|119720587|ref|YP_921082.1| - 0.004 17.1 4.7 0.004 17.1 4.7 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF5134) CT_C_D PF02682.16 gi|119720587|ref|YP_921082.1| - 0.011 15.5 0.1 0.031 14.0 0.1 1.9 1 0 0 1 1 1 0 Carboxyltransferase domain, subdomain C and D AMP-binding_C_2 PF14535.6 gi|119720587|ref|YP_921082.1| - 0.028 14.7 1.9 1.1 9.6 0.7 2.5 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain SsgA PF04686.12 gi|119720587|ref|YP_921082.1| - 0.029 14.4 3.2 0.097 12.7 0.3 2.7 1 1 1 2 2 2 0 Streptomyces sporulation and cell division protein, SsgA Arm-DNA-bind_3 PF13356.6 gi|119720587|ref|YP_921082.1| - 0.1 13.0 0.4 5.1 7.5 0.1 2.6 2 0 0 2 2 2 0 Arm DNA-binding domain FtsZ_C PF12327.8 gi|119720587|ref|YP_921082.1| - 0.1 12.9 1.4 6.8 7.1 0.2 2.7 1 1 1 2 2 2 0 FtsZ family, C-terminal domain CinA_KH PF18146.1 gi|119720587|ref|YP_921082.1| - 1.5 9.0 8.2 10 6.4 0.1 3.9 4 2 1 5 5 5 0 Damage-inducible protein CinA KH domain Ribosomal_L12_N PF16320.5 gi|119720587|ref|YP_921082.1| - 7.2 6.4 6.3 2.6 7.8 0.1 3.1 3 0 0 3 3 3 0 Ribosomal protein L7/L12 dimerisation domain OmpH PF03938.14 gi|119720588|ref|YP_921083.1| - 1.6e-06 28.5 18.6 0.024 15.0 0.1 4.1 2 1 2 4 4 4 3 Outer membrane protein (OmpH-like) YkyA PF10368.9 gi|119720588|ref|YP_921083.1| - 0.0018 18.0 17.8 0.018 14.8 5.9 3.0 1 1 2 3 3 3 3 Putative cell-wall binding lipoprotein Golgin_A5 PF09787.9 gi|119720588|ref|YP_921083.1| - 0.0037 16.8 27.8 0.0073 15.8 8.0 3.2 1 1 2 3 3 3 2 Golgin subfamily A member 5 DUF3584 PF12128.8 gi|119720588|ref|YP_921083.1| - 0.0042 14.7 18.3 0.0082 13.7 18.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) TPR_MLP1_2 PF07926.12 gi|119720588|ref|YP_921083.1| - 0.0065 16.5 30.0 0.035 14.2 5.1 4.9 2 1 1 4 4 4 2 TPR/MLP1/MLP2-like protein DUF4709 PF15821.5 gi|119720588|ref|YP_921083.1| - 0.01 16.1 7.9 6 7.2 0.1 5.0 3 1 2 5 5 4 0 Domain of unknown function (DUF4709) KxDL PF10241.9 gi|119720588|ref|YP_921083.1| - 0.022 15.0 22.5 0.27 11.5 0.6 5.1 1 1 5 6 6 6 0 Uncharacterized conserved protein Exonuc_VII_L PF02601.15 gi|119720588|ref|YP_921083.1| - 0.03 13.9 20.5 0.71 9.4 9.0 2.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit Bacillus_HBL PF05791.11 gi|119720588|ref|YP_921083.1| - 0.044 13.6 1.1 12 5.7 0.0 3.1 2 1 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Fib_alpha PF08702.10 gi|119720588|ref|YP_921083.1| - 0.21 11.7 8.8 1.7 8.9 1.5 2.9 2 1 1 4 4 3 0 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|119720588|ref|YP_921083.1| - 0.22 10.4 24.2 0.53 9.1 13.0 2.6 1 1 1 2 2 2 0 Spc7 kinetochore protein Sulfotransfer_4 PF17784.1 gi|119720588|ref|YP_921083.1| - 0.45 10.3 8.9 5.2 6.8 0.1 3.4 1 1 2 3 3 3 0 Sulfotransferase domain DUF885 PF05960.11 gi|119720588|ref|YP_921083.1| - 0.56 9.8 14.1 1.9 8.0 14.1 2.1 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF885) SKA2 PF16740.5 gi|119720588|ref|YP_921083.1| - 0.79 9.5 18.7 2 8.2 0.2 4.6 2 1 2 5 5 5 0 Spindle and kinetochore-associated protein 2 DUF16 PF01519.16 gi|119720588|ref|YP_921083.1| - 1.4 9.4 13.1 4.1 7.9 0.4 4.0 2 1 2 4 4 3 0 Protein of unknown function DUF16 DUF4407 PF14362.6 gi|119720588|ref|YP_921083.1| - 1.5 8.1 12.9 63 2.8 12.9 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) YusW PF14039.6 gi|119720588|ref|YP_921083.1| - 1.6 9.3 8.2 27 5.3 0.2 4.0 2 2 2 4 4 4 0 YusW-like protein TMPIT PF07851.13 gi|119720588|ref|YP_921083.1| - 2.6 7.2 13.1 2.3 7.4 1.3 2.9 1 1 3 4 4 4 0 TMPIT-like protein SLATT_4 PF18186.1 gi|119720588|ref|YP_921083.1| - 2.9 7.5 5.5 3.8 7.1 1.0 2.6 2 2 1 3 3 3 0 SMODS and SLOG-associating 2TM effector domain family 4 DUF1664 PF07889.12 gi|119720588|ref|YP_921083.1| - 3 7.9 9.3 23 5.1 0.5 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) Nmad5 PF18757.1 gi|119720588|ref|YP_921083.1| - 3.3 7.9 16.3 4.9 7.3 9.6 3.3 1 1 2 3 3 3 0 Nucleotide modification associated domain 5 DUF3130 PF11328.8 gi|119720588|ref|YP_921083.1| - 4.4 7.6 5.1 58 4.0 0.1 4.7 4 2 1 5 5 5 0 Protein of unknown function (DUF3130 YscO-like PF16789.5 gi|119720588|ref|YP_921083.1| - 4.6 7.2 38.2 0.14 12.2 5.7 4.2 2 1 2 4 4 3 0 YscO-like protein Nup88 PF10168.9 gi|119720588|ref|YP_921083.1| - 6 4.6 21.8 0.1 10.4 11.9 2.1 1 1 0 2 2 2 0 Nuclear pore component SHE3 PF17078.5 gi|119720588|ref|YP_921083.1| - 6.9 6.3 14.8 76 2.9 12.0 2.6 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 HIP1_clath_bdg PF16515.5 gi|119720588|ref|YP_921083.1| - 8.1 7.1 26.0 12 6.6 2.4 4.4 1 1 4 5 5 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 RmuC PF02646.16 gi|119720588|ref|YP_921083.1| - 9.6 5.2 12.8 1.8 7.6 0.9 3.8 1 1 1 3 3 3 0 RmuC family DUF4375 PF14300.6 gi|119720588|ref|YP_921083.1| - 10 6.4 18.0 0.95 9.7 1.1 4.0 1 1 4 5 5 5 0 Domain of unknown function (DUF4375) NTP_transf_2 PF01909.23 gi|119720589|ref|YP_921084.1| - 3.9e-10 39.9 0.1 5e-10 39.5 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720589|ref|YP_921084.1| - 0.00063 19.8 0.0 0.00069 19.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|119720589|ref|YP_921084.1| - 0.062 13.5 0.0 0.081 13.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm ETF PF01012.21 gi|119720589|ref|YP_921084.1| - 0.092 12.6 0.1 0.66 9.8 0.0 2.0 2 0 0 2 2 2 0 Electron transfer flavoprotein domain HEPN PF05168.14 gi|119720590|ref|YP_921085.1| - 3e-35 120.9 0.0 3.6e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|119720590|ref|YP_921085.1| - 0.00075 19.4 0.1 0.0023 17.8 0.0 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|119720591|ref|YP_921086.1| - 5e-17 62.1 1.8 7.3e-17 61.6 1.8 1.3 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|119720592|ref|YP_921087.1| - 2.3e-06 27.8 0.0 3.1e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720592|ref|YP_921087.1| - 0.0059 16.7 0.0 0.0073 16.4 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Kelch_1 PF01344.25 gi|119720592|ref|YP_921087.1| - 0.1 12.2 0.2 0.24 11.0 0.2 1.6 1 0 0 1 1 1 0 Kelch motif HEPN PF05168.14 gi|119720593|ref|YP_921088.1| - 3.7e-30 104.5 2.8 4.3e-30 104.3 2.8 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|119720593|ref|YP_921088.1| - 0.027 14.4 1.1 0.027 14.4 1.1 1.8 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family HEPN_AbiV PF18728.1 gi|119720593|ref|YP_921088.1| - 0.049 13.8 0.7 0.065 13.4 0.7 1.3 1 0 0 1 1 1 0 AbiV NTP_transf_2 PF01909.23 gi|119720594|ref|YP_921089.1| - 8.5e-12 45.2 0.3 1.2e-11 44.7 0.3 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720594|ref|YP_921089.1| - 3.8e-09 36.5 0.0 5.7e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase RlaP PF10127.9 gi|119720594|ref|YP_921089.1| - 0.014 15.0 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family Adenyl_transf PF04439.12 gi|119720594|ref|YP_921089.1| - 0.13 11.4 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Streptomycin adenylyltransferase DUF294 PF03445.13 gi|119720594|ref|YP_921089.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Polbeta PF18765.1 gi|119720595|ref|YP_921090.1| - 2.3e-13 50.0 0.0 2.9e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|119720595|ref|YP_921090.1| - 4.5e-06 26.9 0.1 6.6e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|119720596|ref|YP_921091.1| - 1.7e-17 63.4 0.0 1.8e-17 63.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 PIN PF01850.21 gi|119720597|ref|YP_921092.1| - 1.2e-10 42.0 0.4 1.9e-10 41.3 0.4 1.3 1 1 0 1 1 1 1 PIN domain RHH_1 PF01402.21 gi|119720598|ref|YP_921093.1| - 0.00015 21.6 0.5 0.00032 20.5 0.5 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PaREP1 PF05942.11 gi|119720599|ref|YP_921094.1| - 5.2e-36 123.1 3.3 6.5e-36 122.7 3.3 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|119720599|ref|YP_921094.1| - 0.089 12.9 2.3 0.7 10.0 2.3 2.1 1 1 0 1 1 1 0 HEPN domain SesA PF17107.5 gi|119720599|ref|YP_921094.1| - 0.09 13.0 0.0 0.76 10.0 0.0 2.0 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Cpn60_TCP1 PF00118.24 gi|119720599|ref|YP_921094.1| - 0.13 10.9 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family NTP_transf_2 PF01909.23 gi|119720600|ref|YP_921095.1| - 2.5e-13 50.1 0.0 2.9e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119720600|ref|YP_921095.1| - 2.4e-07 30.7 0.0 3.1e-07 30.4 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase BolA PF01722.18 gi|119720600|ref|YP_921095.1| - 0.018 15.3 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 BolA-like protein HEPN PF05168.14 gi|119720601|ref|YP_921096.1| - 5.3e-27 94.3 0.0 6.1e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.6 gi|119720601|ref|YP_921096.1| - 0.059 14.0 3.6 0.8 10.4 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) TPR_10 PF13374.6 gi|119720601|ref|YP_921096.1| - 9.8 6.2 6.4 1.7 8.6 1.1 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat PaREP1 PF05942.11 gi|119720602|ref|YP_921097.1| - 3e-06 27.1 1.6 6.8e-06 26.0 1.6 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|119720602|ref|YP_921097.1| - 0.00012 22.3 3.4 0.00016 21.9 3.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) HEPN PF05168.14 gi|119720602|ref|YP_921097.1| - 0.00019 21.5 4.6 0.00039 20.5 4.6 1.4 1 1 0 1 1 1 1 HEPN domain Retrotran_gag_2 PF14223.6 gi|119720602|ref|YP_921097.1| - 0.05 13.3 0.9 0.2 11.3 0.1 2.0 2 1 0 2 2 2 0 gag-polypeptide of LTR copia-type DUF1367 PF07105.11 gi|119720602|ref|YP_921097.1| - 0.072 12.8 0.8 0.097 12.3 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1367) PaREP1 PF05942.11 gi|119720603|ref|YP_921098.1| - 4.8e-27 94.2 4.2 7.9e-27 93.5 4.2 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|119720603|ref|YP_921098.1| - 0.00038 20.6 0.9 0.0014 18.7 0.9 1.9 1 1 0 1 1 1 1 HEPN domain CopG_antitoxin PF12441.8 gi|119720603|ref|YP_921098.1| - 0.035 14.6 0.0 0.064 13.8 0.0 1.5 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system DUF5618 PF18498.1 gi|119720603|ref|YP_921098.1| - 0.12 12.6 0.0 0.37 11.0 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5618) ACP_syn_III PF08545.10 gi|119720605|ref|YP_921100.1| - 0.061 13.2 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AAA_15 PF13175.6 gi|119720606|ref|YP_921101.1| - 5.8e-23 82.2 0.0 3.1e-14 53.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|119720606|ref|YP_921101.1| - 5.4e-21 75.7 0.1 1.7e-15 57.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|119720606|ref|YP_921101.1| - 0.00046 19.6 0.0 0.047 13.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|119720606|ref|YP_921101.1| - 0.0079 16.7 0.0 0.011 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119720606|ref|YP_921101.1| - 0.03 13.7 0.0 4.2 6.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|119720606|ref|YP_921101.1| - 0.13 11.8 0.3 3.4 7.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|119720606|ref|YP_921101.1| - 0.15 11.8 0.1 0.46 10.3 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|119720606|ref|YP_921101.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AP_endonuc_2 PF01261.24 gi|119720607|ref|YP_921102.1| - 0.092 12.2 0.0 0.16 11.4 0.0 1.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF3782 PF12644.7 gi|119720608|ref|YP_921103.1| - 9.6e-11 41.7 12.4 1.2e-10 41.3 3.0 3.7 1 1 1 2 2 2 1 Protein of unknown function (DUF3782) MCPsignal PF00015.21 gi|119720608|ref|YP_921103.1| - 7.1e-07 29.2 3.7 2.6e-06 27.4 0.9 2.6 2 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4618 PF15397.6 gi|119720608|ref|YP_921103.1| - 0.00012 21.6 3.6 0.00016 21.2 3.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) PDDEXK_10 PF07788.11 gi|119720608|ref|YP_921103.1| - 0.00019 21.3 0.5 0.00049 20.0 0.5 1.8 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exonuc_VII_L PF02601.15 gi|119720608|ref|YP_921103.1| - 0.00024 20.8 3.3 0.00038 20.1 3.3 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit BLOC1_2 PF10046.9 gi|119720608|ref|YP_921103.1| - 0.00024 21.3 3.2 0.022 15.0 1.7 2.7 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATG16 PF08614.11 gi|119720608|ref|YP_921103.1| - 0.0012 19.1 10.5 0.0027 17.9 10.5 1.5 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) Syntaxin-6_N PF09177.11 gi|119720608|ref|YP_921103.1| - 0.002 18.7 7.6 0.084 13.4 0.4 2.6 1 1 1 2 2 2 1 Syntaxin 6, N-terminal Spc7 PF08317.11 gi|119720608|ref|YP_921103.1| - 0.0021 17.0 9.7 0.0037 16.2 8.9 1.7 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF2383 PF09537.10 gi|119720608|ref|YP_921103.1| - 0.0023 18.2 5.6 0.13 12.6 0.4 2.9 1 1 2 3 3 2 2 Domain of unknown function (DUF2383) EzrA PF06160.12 gi|119720608|ref|YP_921103.1| - 0.0035 15.6 5.6 0.0047 15.2 5.6 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA AAA_13 PF13166.6 gi|119720608|ref|YP_921103.1| - 0.0037 16.0 2.3 0.0048 15.6 2.3 1.1 1 0 0 1 1 1 1 AAA domain FAM184 PF15665.5 gi|119720608|ref|YP_921103.1| - 0.0037 17.1 7.4 0.0053 16.6 7.4 1.2 1 0 0 1 1 1 1 Family with sequence similarity 184, A and B DUF4559 PF15112.6 gi|119720608|ref|YP_921103.1| - 0.004 16.9 1.8 0.006 16.3 1.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) DUF948 PF06103.11 gi|119720608|ref|YP_921103.1| - 0.0044 17.2 0.5 0.096 13.0 0.5 2.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) HMMR_N PF15905.5 gi|119720608|ref|YP_921103.1| - 0.0078 15.7 3.6 0.01 15.4 3.6 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal APG17 PF04108.12 gi|119720608|ref|YP_921103.1| - 0.011 14.9 4.4 0.015 14.4 4.4 1.3 1 0 0 1 1 1 0 Autophagy protein Apg17 HOOK PF05622.12 gi|119720608|ref|YP_921103.1| - 0.011 13.9 6.5 0.015 13.4 6.5 1.1 1 0 0 1 1 1 0 HOOK protein Noelin-1 PF12308.8 gi|119720608|ref|YP_921103.1| - 0.012 15.5 4.8 1.1 9.3 0.2 2.5 1 1 2 3 3 3 0 Neurogenesis glycoprotein IFT57 PF10498.9 gi|119720608|ref|YP_921103.1| - 0.013 14.5 5.1 0.016 14.2 5.1 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 KxDL PF10241.9 gi|119720608|ref|YP_921103.1| - 0.014 15.6 3.8 0.33 11.3 0.5 2.5 1 1 2 3 3 3 0 Uncharacterized conserved protein TMF_TATA_bd PF12325.8 gi|119720608|ref|YP_921103.1| - 0.016 15.4 13.2 0.12 12.6 2.7 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding FAM76 PF16046.5 gi|119720608|ref|YP_921103.1| - 0.017 14.5 4.1 0.022 14.2 4.1 1.1 1 0 0 1 1 1 0 FAM76 protein V_ATPase_I PF01496.19 gi|119720608|ref|YP_921103.1| - 0.024 12.6 1.8 0.028 12.3 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Sec34 PF04136.15 gi|119720608|ref|YP_921103.1| - 0.028 14.3 3.3 0.68 9.8 0.2 2.2 1 1 1 2 2 2 0 Sec34-like family DUF1487 PF07368.11 gi|119720608|ref|YP_921103.1| - 0.032 13.7 0.4 4 6.8 0.2 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1487) DUF812 PF05667.11 gi|119720608|ref|YP_921103.1| - 0.032 13.1 6.5 0.057 12.3 6.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF1664 PF07889.12 gi|119720608|ref|YP_921103.1| - 0.039 14.0 3.0 0.79 9.8 3.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) SlyX PF04102.12 gi|119720608|ref|YP_921103.1| - 0.063 13.9 3.3 2.8 8.6 0.5 3.0 1 1 2 3 3 2 0 SlyX T7SS_ESX_EspC PF10824.8 gi|119720608|ref|YP_921103.1| - 0.064 13.7 0.0 20 5.7 0.0 2.5 1 1 0 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm Nsp1_C PF05064.13 gi|119720608|ref|YP_921103.1| - 0.091 12.6 0.4 0.62 9.9 0.0 2.1 1 1 1 2 2 2 0 Nsp1-like C-terminal region FapA PF03961.13 gi|119720608|ref|YP_921103.1| - 0.098 11.2 2.7 0.14 10.7 2.7 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A baeRF_family2 PF18844.1 gi|119720608|ref|YP_921103.1| - 0.1 12.6 5.9 0.23 11.5 0.7 2.5 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 MPS2 PF17060.5 gi|119720608|ref|YP_921103.1| - 0.12 11.6 6.5 0.39 9.9 5.5 1.8 1 1 1 2 2 2 0 Monopolar spindle protein 2 BDV_P24 PF06595.11 gi|119720608|ref|YP_921103.1| - 0.13 12.1 0.6 3.1 7.6 0.0 2.2 1 1 1 2 2 2 0 Borna disease virus P24 protein TMPIT PF07851.13 gi|119720608|ref|YP_921103.1| - 0.16 11.2 3.9 0.51 9.5 4.0 1.6 1 1 1 2 2 2 0 TMPIT-like protein Serine_rich PF08824.10 gi|119720608|ref|YP_921103.1| - 0.17 11.9 1.7 0.69 9.9 1.5 1.9 1 1 0 1 1 1 0 Serine rich protein interaction domain GAS PF13851.6 gi|119720608|ref|YP_921103.1| - 0.18 11.1 9.5 0.99 8.7 9.0 1.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Spc29 PF17082.5 gi|119720608|ref|YP_921103.1| - 0.19 11.6 7.0 0.46 10.3 1.9 2.1 1 1 1 2 2 2 0 Spindle Pole Component 29 CorA PF01544.18 gi|119720608|ref|YP_921103.1| - 0.21 10.9 5.9 0.36 10.1 5.9 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Prominin PF05478.11 gi|119720608|ref|YP_921103.1| - 0.22 9.4 1.1 0.56 8.1 1.1 1.5 1 1 0 1 1 1 0 Prominin ISG65-75 PF11727.8 gi|119720608|ref|YP_921103.1| - 0.24 10.6 3.8 1 8.5 3.7 1.9 1 1 0 1 1 1 0 Invariant surface glycoprotein Spore_III_AB PF09548.10 gi|119720608|ref|YP_921103.1| - 0.25 11.5 4.8 0.92 9.6 3.4 2.1 1 1 2 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) zf-C4H2 PF10146.9 gi|119720608|ref|YP_921103.1| - 0.32 11.3 9.5 0.51 10.6 7.4 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein UPF0242 PF06785.11 gi|119720608|ref|YP_921103.1| - 0.34 11.0 7.5 0.27 11.3 5.6 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TMF_DNA_bd PF12329.8 gi|119720608|ref|YP_921103.1| - 0.37 10.8 10.7 0.79 9.8 5.8 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF919 PF06034.11 gi|119720608|ref|YP_921103.1| - 0.4 10.5 5.9 0.15 11.9 2.0 2.3 2 1 1 3 3 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) CREPT PF16566.5 gi|119720608|ref|YP_921103.1| - 0.56 10.4 8.6 0.74 10.0 6.0 2.1 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Fib_alpha PF08702.10 gi|119720608|ref|YP_921103.1| - 0.66 10.1 3.7 2.4 8.3 3.7 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Sec8_exocyst PF04048.14 gi|119720608|ref|YP_921103.1| - 0.67 9.8 3.6 3.9 7.4 0.5 2.2 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Helo_like_N PF17111.5 gi|119720608|ref|YP_921103.1| - 0.76 9.1 5.3 1.7 8.0 2.0 2.5 1 1 2 3 3 3 0 Fungal N-terminal domain of STAND proteins DUF745 PF05335.13 gi|119720608|ref|YP_921103.1| - 0.77 9.5 8.4 0.3 10.8 2.7 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF745) Sec2p PF06428.11 gi|119720608|ref|YP_921103.1| - 0.89 9.6 6.8 0.74 9.8 1.3 2.5 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p FlaC_arch PF05377.11 gi|119720608|ref|YP_921103.1| - 1 9.8 5.5 3 8.3 0.2 3.0 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) APG6_N PF17675.1 gi|119720608|ref|YP_921103.1| - 1.4 9.5 9.4 2.2 8.8 9.4 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF4200 PF13863.6 gi|119720608|ref|YP_921103.1| - 1.4 9.3 8.4 2.1 8.8 7.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) DUF4404 PF14357.6 gi|119720608|ref|YP_921103.1| - 1.7 9.4 8.8 7.3 7.3 0.9 2.7 2 1 1 3 3 2 0 Domain of unknown function (DUF4404) DUF3450 PF11932.8 gi|119720608|ref|YP_921103.1| - 1.9 7.7 5.4 1.3 8.3 1.7 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) MutS_III PF05192.18 gi|119720608|ref|YP_921103.1| - 2.2 8.5 5.8 4.9 7.3 5.8 1.6 1 1 0 1 1 1 0 MutS domain III Laminin_II PF06009.12 gi|119720608|ref|YP_921103.1| - 2.4 8.2 9.0 0.24 11.4 3.3 2.2 2 1 1 3 3 2 0 Laminin Domain II Atg14 PF10186.9 gi|119720608|ref|YP_921103.1| - 3.2 6.7 8.9 4.6 6.2 8.6 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Seryl_tRNA_N PF02403.22 gi|119720608|ref|YP_921103.1| - 3.8 7.8 8.2 2.1 8.6 1.1 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CENP-H PF05837.12 gi|119720608|ref|YP_921103.1| - 4.5 7.7 8.4 11 6.4 7.8 2.0 1 1 0 1 1 1 0 Centromere protein H (CENP-H) SOAR PF16533.5 gi|119720608|ref|YP_921103.1| - 4.5 7.3 8.6 14 5.7 1.4 2.5 1 1 1 2 2 2 0 STIM1 Orai1-activating region RP-C_C PF11800.8 gi|119720608|ref|YP_921103.1| - 6 6.9 8.4 45 4.0 8.4 2.0 1 1 0 1 1 1 0 Replication protein C C-terminal region VAPB_antitox PF02697.14 gi|119720608|ref|YP_921103.1| - 7.2 7.5 13.5 2 9.2 1.9 3.7 1 1 2 3 3 3 0 Putative antitoxin Cep57_MT_bd PF06657.13 gi|119720608|ref|YP_921103.1| - 9 6.8 11.1 4 8.0 2.3 3.0 1 1 1 3 3 2 0 Centrosome microtubule-binding domain of Cep57 Asp_protease_2 PF13650.6 gi|119720609|ref|YP_921104.1| - 0.02 15.6 0.0 0.04 14.6 0.0 1.4 1 0 0 1 1 1 0 Aspartyl protease gag-asp_proteas PF13975.6 gi|119720609|ref|YP_921104.1| - 0.06 13.9 0.0 0.09 13.3 0.0 1.2 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease NUC153 PF08159.12 gi|119720609|ref|YP_921104.1| - 0.15 11.9 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 NUC153 domain Asp PF00026.23 gi|119720609|ref|YP_921104.1| - 0.21 11.0 0.0 2.8 7.3 0.0 2.0 1 1 1 2 2 2 0 Eukaryotic aspartyl protease MazE_antitoxin PF04014.18 gi|119720611|ref|YP_921106.1| - 3.8e-08 33.1 0.3 5.4e-08 32.6 0.3 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF1246 PF06849.12 gi|119720611|ref|YP_921106.1| - 0.054 13.5 0.1 0.086 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1246) PIN PF01850.21 gi|119720612|ref|YP_921107.1| - 0.0015 19.0 0.0 0.002 18.6 0.0 1.2 1 0 0 1 1 1 1 PIN domain DALR_1 PF05746.15 gi|119720613|ref|YP_921108.1| - 0.0072 16.5 0.1 0.0086 16.2 0.1 1.1 1 0 0 1 1 1 1 DALR anticodon binding domain Phostensin_N PF13916.6 gi|119720613|ref|YP_921108.1| - 0.071 13.5 0.5 0.074 13.4 0.5 1.2 1 0 0 1 1 1 0 PP1-regulatory protein, Phostensin N-terminal dTDP_sugar_isom PF00908.17 gi|119720615|ref|YP_921110.1| - 1.2e-59 200.7 0.0 1.4e-59 200.6 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_1 PF00190.22 gi|119720615|ref|YP_921110.1| - 0.00043 19.9 0.1 0.00059 19.5 0.1 1.2 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.11 gi|119720615|ref|YP_921110.1| - 0.0067 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Toxin_24 PF08094.11 gi|119720615|ref|YP_921110.1| - 0.094 12.5 0.2 0.19 11.6 0.2 1.4 1 0 0 1 1 1 0 Conotoxin TVIIA/GS family RmlD_sub_bind PF04321.17 gi|119720616|ref|YP_921111.1| - 0.00032 19.9 0.0 0.00034 19.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Peptidase_S8 PF00082.22 gi|119720617|ref|YP_921112.1| - 4e-28 98.6 0.0 1.1e-27 97.1 0.0 1.7 1 1 0 1 1 1 1 Subtilase family ASH PF15780.5 gi|119720617|ref|YP_921112.1| - 6.2e-08 32.8 2.4 5.3e-05 23.3 0.1 2.9 3 0 0 3 3 3 2 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin fn3_5 PF06280.12 gi|119720617|ref|YP_921112.1| - 0.0028 18.4 3.0 0.043 14.5 0.6 2.9 3 0 0 3 3 3 1 Fn3-like domain Epimerase_2 PF02350.19 gi|119720618|ref|YP_921113.1| - 2.6e-109 365.3 0.0 3.3e-109 364.9 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.12 gi|119720618|ref|YP_921113.1| - 0.0018 17.4 0.0 0.052 12.6 0.0 2.2 1 1 0 2 2 2 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|119720618|ref|YP_921113.1| - 0.0069 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.20 gi|119720618|ref|YP_921113.1| - 0.044 13.8 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DB_JBP1 PF18526.1 gi|119720618|ref|YP_921113.1| - 0.045 13.7 0.1 0.12 12.3 0.1 1.6 2 0 0 2 2 2 0 Thymine dioxygenase JBP1 DNA-binding domain Rhodanese PF00581.20 gi|119720618|ref|YP_921113.1| - 0.14 12.7 0.0 0.56 10.7 0.0 1.9 2 0 0 2 2 2 0 Rhodanese-like domain Methyltransf_21 PF05050.12 gi|119720619|ref|YP_921114.1| - 2.2e-19 70.1 0.0 3e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|119720619|ref|YP_921114.1| - 3.4e-05 23.7 0.1 5.8e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|119720619|ref|YP_921114.1| - 0.06 12.6 0.0 0.17 11.2 0.0 1.7 1 1 0 1 1 1 0 Vibrio cholerae RfbT protein Glycos_transf_1 PF00534.20 gi|119720620|ref|YP_921115.1| - 7.9e-43 146.0 0.0 1.5e-42 145.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720620|ref|YP_921115.1| - 2.1e-33 115.6 0.1 9.5e-33 113.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720620|ref|YP_921115.1| - 3.2e-20 72.8 1.5 1.1e-19 71.0 1.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119720620|ref|YP_921115.1| - 8.5e-14 52.3 0.1 8.5e-14 52.3 0.1 2.0 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|119720620|ref|YP_921115.1| - 6.4e-12 45.7 0.2 5.7e-11 42.6 0.2 2.4 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|119720620|ref|YP_921115.1| - 7.6e-11 42.3 0.0 1.8e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 PMT_2 PF13231.6 gi|119720621|ref|YP_921116.1| - 0.0032 17.7 21.2 0.0032 17.7 21.2 3.4 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase UDPG_MGDP_dh_N PF03721.14 gi|119720622|ref|YP_921117.1| - 3.2e-60 202.9 0.0 6.2e-60 202.0 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|119720622|ref|YP_921117.1| - 2.1e-34 117.6 0.0 2.5e-33 114.1 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|119720622|ref|YP_921117.1| - 1.9e-29 102.1 0.0 7.6e-29 100.2 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|119720622|ref|YP_921117.1| - 2.2e-08 34.6 0.0 0.0083 16.7 0.0 3.3 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|119720622|ref|YP_921117.1| - 1.3e-07 32.0 0.1 1.3e-06 28.7 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|119720622|ref|YP_921117.1| - 0.00023 21.2 0.0 0.0025 17.8 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|119720622|ref|YP_921117.1| - 0.00044 20.2 0.0 0.00098 19.1 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|119720622|ref|YP_921117.1| - 0.0022 18.0 0.1 0.012 15.5 0.0 2.3 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.14 gi|119720622|ref|YP_921117.1| - 0.0043 16.3 0.0 0.0086 15.3 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|119720622|ref|YP_921117.1| - 0.008 16.4 0.1 0.039 14.2 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_10 PF13460.6 gi|119720622|ref|YP_921117.1| - 0.0096 15.8 0.5 0.38 10.6 0.1 2.4 2 1 0 2 2 2 1 NAD(P)H-binding GFO_IDH_MocA PF01408.22 gi|119720622|ref|YP_921117.1| - 0.01 16.6 0.0 0.39 11.5 0.0 2.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold GIDA PF01134.22 gi|119720622|ref|YP_921117.1| - 0.034 13.2 0.0 0.046 12.8 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A CbiA PF01656.23 gi|119720622|ref|YP_921117.1| - 0.058 13.4 0.0 0.12 12.4 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain FAD_binding_2 PF00890.24 gi|119720622|ref|YP_921117.1| - 0.072 12.2 0.2 0.13 11.3 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|119720622|ref|YP_921117.1| - 0.08 12.2 0.2 0.18 11.0 0.1 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|119720622|ref|YP_921117.1| - 0.14 11.5 0.1 1.1 8.6 0.1 2.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NTP_transferase PF00483.23 gi|119720623|ref|YP_921118.1| - 9.5e-30 104.0 0.0 1.7e-29 103.2 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119720623|ref|YP_921118.1| - 2.5e-06 27.9 0.0 4.1e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_trans_1_4 PF13692.6 gi|119720624|ref|YP_921119.1| - 1.5e-20 74.0 0.1 2.4e-20 73.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|119720624|ref|YP_921119.1| - 1.3e-15 57.3 0.0 2.4e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720624|ref|YP_921119.1| - 0.00029 20.9 0.1 0.0017 18.4 0.1 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119720624|ref|YP_921119.1| - 0.024 15.1 0.0 0.17 12.4 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119720624|ref|YP_921119.1| - 0.067 13.6 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|119720625|ref|YP_921120.1| - 9.1e-27 93.7 0.0 2e-24 86.1 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720625|ref|YP_921120.1| - 4e-19 69.4 0.0 7.5e-18 65.3 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720625|ref|YP_921120.1| - 4.2e-05 23.6 0.4 0.00022 21.2 0.0 2.4 3 1 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|119720625|ref|YP_921120.1| - 0.00022 21.5 0.0 0.00043 20.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|119720625|ref|YP_921120.1| - 0.00057 20.4 0.0 0.00088 19.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|119720626|ref|YP_921121.1| - 4e-36 124.1 0.0 8e-36 123.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720626|ref|YP_921121.1| - 4.8e-33 114.4 0.0 7.9e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720626|ref|YP_921121.1| - 8.7e-19 68.1 0.1 2.6e-18 66.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119720626|ref|YP_921121.1| - 1.7e-08 35.1 0.0 4.2e-08 33.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119720626|ref|YP_921121.1| - 3.3e-06 27.4 0.0 9.2e-06 26.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|119720627|ref|YP_921122.1| - 5.9e-36 123.6 0.0 1.1e-35 122.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720627|ref|YP_921122.1| - 2.1e-26 92.9 0.2 4.1e-25 88.8 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720627|ref|YP_921122.1| - 4.2e-10 39.9 0.1 7.8e-09 35.8 0.0 2.5 3 1 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119720627|ref|YP_921122.1| - 0.0035 17.8 0.0 0.087 13.3 0.0 2.4 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119720627|ref|YP_921122.1| - 0.0063 16.9 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720628|ref|YP_921123.1| - 1.2e-18 67.7 0.1 3.4e-18 66.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|119720628|ref|YP_921123.1| - 9.7e-15 54.5 0.0 1.6e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720628|ref|YP_921123.1| - 1.6e-12 48.0 0.0 3.1e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|119720628|ref|YP_921123.1| - 6.2e-11 43.0 0.0 1.1e-10 42.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|119720628|ref|YP_921123.1| - 0.02 15.0 0.0 0.09 12.8 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|119720628|ref|YP_921123.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|119720628|ref|YP_921123.1| - 0.17 12.3 0.0 0.4 11.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 NTP_transferase PF00483.23 gi|119720629|ref|YP_921124.1| - 1.2e-22 80.7 0.0 1.4e-22 80.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119720629|ref|YP_921124.1| - 8.8e-16 58.7 0.3 9.2e-16 58.6 0.3 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|119720629|ref|YP_921124.1| - 0.00051 19.8 0.0 0.00072 19.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|119720629|ref|YP_921124.1| - 0.027 14.4 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Glycos_transf_2 PF00535.26 gi|119720630|ref|YP_921125.1| - 1.7e-18 67.0 0.0 2.3e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|119720630|ref|YP_921125.1| - 8.1e-07 29.5 0.0 1.3e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_3 PF13641.6 gi|119720630|ref|YP_921125.1| - 6.4e-06 26.2 0.1 1e-05 25.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transferase PF00483.23 gi|119720630|ref|YP_921125.1| - 0.086 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Phage_holin_2_1 PF04971.12 gi|119720630|ref|YP_921125.1| - 0.4 10.7 2.9 0.33 11.0 0.8 1.9 2 0 0 2 2 2 0 Bacteriophage P21 holin S DUF3131 PF11329.8 gi|119720632|ref|YP_921127.1| - 6.9e-51 173.4 1.1 2.3e-49 168.4 1.1 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF3131) CarboxypepD_reg PF13620.6 gi|119720632|ref|YP_921127.1| - 3e-09 37.0 7.0 0.002 18.3 0.1 4.3 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|119720632|ref|YP_921127.1| - 0.00028 20.8 0.2 0.0032 17.4 0.0 2.7 2 1 1 3 3 3 1 CarboxypepD_reg-like domain MG4 PF17789.1 gi|119720632|ref|YP_921127.1| - 0.00054 20.1 0.1 0.68 10.1 0.0 3.3 2 1 1 3 3 3 2 Macroglobulin domain MG4 NPCBM_assoc PF10633.9 gi|119720632|ref|YP_921127.1| - 0.046 14.0 7.0 0.49 10.7 0.7 4.3 2 1 2 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF824 PF05688.11 gi|119720632|ref|YP_921127.1| - 0.15 11.9 1.1 8.1 6.4 0.0 3.1 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) Invasin_D3 PF09134.10 gi|119720632|ref|YP_921127.1| - 0.62 10.4 6.5 4.4 7.7 0.1 3.4 2 1 1 3 3 3 0 Invasin, domain 3 Big_1 PF02369.16 gi|119720632|ref|YP_921127.1| - 1.6 8.8 11.2 0.43 10.6 0.1 4.5 4 2 0 4 4 4 0 Bacterial Ig-like domain (group 1) Glyco_tranf_2_3 PF13641.6 gi|119720633|ref|YP_921128.1| - 1.4e-44 152.7 0.1 1.9e-44 152.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|119720633|ref|YP_921128.1| - 2e-32 112.7 4.0 2e-32 112.7 4.0 2.6 3 1 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|119720633|ref|YP_921128.1| - 2.4e-28 99.1 0.0 3.2e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|119720633|ref|YP_921128.1| - 4.7e-20 71.8 0.0 7.7e-20 71.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|119720633|ref|YP_921128.1| - 1.3e-05 24.9 0.0 1.7e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 MHYT PF03707.16 gi|119720634|ref|YP_921129.1| - 0.35 11.0 5.0 0.31 11.2 0.2 3.1 3 0 0 3 3 3 0 Bacterial signalling protein N terminal repeat LMBR1 PF04791.16 gi|119720635|ref|YP_921130.1| - 0.025 13.5 0.0 0.027 13.4 0.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2207 PF09972.9 gi|119720635|ref|YP_921130.1| - 0.12 11.1 0.1 0.13 11.0 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|119720635|ref|YP_921130.1| - 0.12 12.4 8.9 0.043 13.8 6.6 1.4 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2614 PF11023.8 gi|119720635|ref|YP_921130.1| - 0.16 12.1 0.2 0.18 11.9 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Spc7 PF08317.11 gi|119720636|ref|YP_921131.1| - 0.00016 20.7 6.0 0.00018 20.5 6.0 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Gp58 PF07902.11 gi|119720636|ref|YP_921131.1| - 0.00028 19.3 1.3 0.0003 19.2 1.3 1.0 1 0 0 1 1 1 1 gp58-like protein MtrB PF05440.12 gi|119720636|ref|YP_921131.1| - 0.00041 20.7 0.0 0.00052 20.4 0.0 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B PspA_IM30 PF04012.12 gi|119720636|ref|YP_921131.1| - 0.0007 19.2 3.6 0.00083 19.0 3.6 1.0 1 0 0 1 1 1 1 PspA/IM30 family Tropomyosin_1 PF12718.7 gi|119720636|ref|YP_921131.1| - 0.00076 19.7 3.5 0.00089 19.4 3.5 1.1 1 0 0 1 1 1 1 Tropomyosin like MotA_ExbB PF01618.16 gi|119720636|ref|YP_921131.1| - 0.00078 19.2 0.0 0.00093 18.9 0.0 1.1 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family Lebercilin PF15619.6 gi|119720636|ref|YP_921131.1| - 0.00079 19.1 3.0 0.00093 18.9 3.0 1.1 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease AAA_13 PF13166.6 gi|119720636|ref|YP_921131.1| - 0.00084 18.1 0.0 0.00084 18.1 0.0 1.0 1 0 0 1 1 1 1 AAA domain Filament PF00038.21 gi|119720636|ref|YP_921131.1| - 0.00099 18.8 3.5 0.0011 18.6 3.5 1.0 1 0 0 1 1 1 1 Intermediate filament protein DUF1043 PF06295.12 gi|119720636|ref|YP_921131.1| - 0.0011 19.0 4.0 0.31 11.1 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1043) DUF2353 PF09789.9 gi|119720636|ref|YP_921131.1| - 0.0019 17.7 1.7 0.0023 17.4 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) TMF_DNA_bd PF12329.8 gi|119720636|ref|YP_921131.1| - 0.0019 18.2 8.4 0.0025 17.8 8.4 1.1 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding MscS_porin PF12795.7 gi|119720636|ref|YP_921131.1| - 0.0021 17.6 5.3 0.0026 17.4 5.3 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain End3 PF12761.7 gi|119720636|ref|YP_921131.1| - 0.0028 17.8 3.9 0.0037 17.5 3.9 1.1 1 0 0 1 1 1 1 Actin cytoskeleton-regulatory complex protein END3 Tropomyosin PF00261.20 gi|119720636|ref|YP_921131.1| - 0.0035 16.7 4.8 0.0041 16.5 4.8 1.0 1 0 0 1 1 1 1 Tropomyosin HemX PF04375.14 gi|119720636|ref|YP_921131.1| - 0.0037 16.6 0.2 0.0039 16.5 0.2 1.2 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase DUF5082 PF16888.5 gi|119720636|ref|YP_921131.1| - 0.0044 17.3 0.6 0.0065 16.7 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF5082) SseC PF04888.12 gi|119720636|ref|YP_921131.1| - 0.0061 16.2 0.1 0.007 16.0 0.1 1.2 1 0 0 1 1 1 1 Secretion system effector C (SseC) like family DegS PF05384.11 gi|119720636|ref|YP_921131.1| - 0.0062 16.1 1.1 0.008 15.7 1.1 1.1 1 0 0 1 1 1 1 Sensor protein DegS Bap31_Bap29_C PF18035.1 gi|119720636|ref|YP_921131.1| - 0.0068 16.4 1.7 0.014 15.4 1.7 1.6 1 0 0 1 1 1 1 Bap31/Bap29 cytoplasmic coiled-coil domain Csm1_N PF18504.1 gi|119720636|ref|YP_921131.1| - 0.007 16.7 6.1 0.071 13.5 1.2 2.1 1 1 1 2 2 2 2 Csm1 N-terminal domain WEMBL PF05701.11 gi|119720636|ref|YP_921131.1| - 0.0084 14.8 3.1 0.0097 14.7 3.1 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light NPV_P10 PF05531.12 gi|119720636|ref|YP_921131.1| - 0.0095 16.4 0.9 0.012 16.0 0.9 1.2 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Jnk-SapK_ap_N PF09744.9 gi|119720636|ref|YP_921131.1| - 0.01 16.1 3.2 0.012 15.9 3.2 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 CALCOCO1 PF07888.11 gi|119720636|ref|YP_921131.1| - 0.011 14.6 3.6 0.013 14.4 3.6 1.0 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Syntaxin-6_N PF09177.11 gi|119720636|ref|YP_921131.1| - 0.011 16.2 1.7 0.019 15.5 1.7 1.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal CENP-F_leu_zip PF10473.9 gi|119720636|ref|YP_921131.1| - 0.013 15.6 5.7 0.015 15.3 5.7 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|119720636|ref|YP_921131.1| - 0.013 15.8 7.7 0.015 15.6 7.7 1.0 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Phage_GP20 PF06810.11 gi|119720636|ref|YP_921131.1| - 0.013 15.3 1.9 0.017 14.9 1.9 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 DUF1664 PF07889.12 gi|119720636|ref|YP_921131.1| - 0.014 15.5 0.4 0.014 15.5 0.4 1.4 2 0 0 2 2 1 0 Protein of unknown function (DUF1664) DUF2730 PF10805.8 gi|119720636|ref|YP_921131.1| - 0.014 15.5 0.6 0.017 15.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) UPF0154 PF03672.13 gi|119720636|ref|YP_921131.1| - 0.016 15.2 0.2 0.03 14.3 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) HMMR_N PF15905.5 gi|119720636|ref|YP_921131.1| - 0.017 14.6 2.2 0.022 14.3 2.2 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal FPP PF05911.11 gi|119720636|ref|YP_921131.1| - 0.017 13.3 3.8 0.019 13.2 3.8 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Fez1 PF06818.15 gi|119720636|ref|YP_921131.1| - 0.018 15.5 0.2 0.019 15.4 0.2 1.1 1 0 0 1 1 1 0 Fez1 TPR_MLP1_2 PF07926.12 gi|119720636|ref|YP_921131.1| - 0.018 15.1 8.1 0.04 14.0 8.1 1.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Rab5-bind PF09311.11 gi|119720636|ref|YP_921131.1| - 0.019 14.4 2.8 0.024 14.0 2.8 1.1 1 0 0 1 1 1 0 Rabaptin-like protein DUF812 PF05667.11 gi|119720636|ref|YP_921131.1| - 0.022 13.7 2.3 0.025 13.5 2.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) GAS PF13851.6 gi|119720636|ref|YP_921131.1| - 0.023 14.1 3.7 0.029 13.7 3.7 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding FAM76 PF16046.5 gi|119720636|ref|YP_921131.1| - 0.024 14.0 0.9 0.029 13.7 0.9 1.1 1 0 0 1 1 1 0 FAM76 protein DUF4201 PF13870.6 gi|119720636|ref|YP_921131.1| - 0.026 14.3 3.4 0.032 14.0 3.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Cast PF10174.9 gi|119720636|ref|YP_921131.1| - 0.027 12.7 4.3 0.03 12.6 4.3 1.0 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone FlaC_arch PF05377.11 gi|119720636|ref|YP_921131.1| - 0.027 14.8 2.0 0.066 13.6 1.1 2.0 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Myosin_tail_1 PF01576.19 gi|119720636|ref|YP_921131.1| - 0.028 12.3 3.2 0.033 12.0 3.2 1.0 1 0 0 1 1 1 0 Myosin tail COG2 PF06148.11 gi|119720636|ref|YP_921131.1| - 0.029 14.5 1.4 0.038 14.1 1.4 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 FmiP_Thoc5 PF09766.9 gi|119720636|ref|YP_921131.1| - 0.031 13.6 2.9 0.037 13.3 2.9 1.0 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 ADIP PF11559.8 gi|119720636|ref|YP_921131.1| - 0.033 14.3 5.6 0.044 13.9 5.6 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4094 PF13334.6 gi|119720636|ref|YP_921131.1| - 0.033 14.6 3.9 0.25 11.8 3.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4094) Exonuc_VII_L PF02601.15 gi|119720636|ref|YP_921131.1| - 0.034 13.7 0.1 0.034 13.7 0.1 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit SKA1 PF07160.12 gi|119720636|ref|YP_921131.1| - 0.035 13.9 0.4 0.044 13.6 0.4 1.1 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 HAP1_N PF04849.13 gi|119720636|ref|YP_921131.1| - 0.036 13.3 4.1 0.041 13.1 4.1 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Cep57_CLD_2 PF14197.6 gi|119720636|ref|YP_921131.1| - 0.037 14.1 5.9 0.036 14.1 4.6 1.7 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 EMP24_GP25L PF01105.24 gi|119720636|ref|YP_921131.1| - 0.039 13.9 0.1 0.044 13.7 0.1 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD ABC_tran_CTD PF16326.5 gi|119720636|ref|YP_921131.1| - 0.041 14.1 3.2 0.07 13.4 3.2 1.4 1 1 0 1 1 1 0 ABC transporter C-terminal domain EzrA PF06160.12 gi|119720636|ref|YP_921131.1| - 0.043 12.0 2.8 0.057 11.6 2.8 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|119720636|ref|YP_921131.1| - 0.05 13.6 0.5 0.058 13.4 0.5 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin_2 PF01920.20 gi|119720636|ref|YP_921131.1| - 0.056 13.4 3.6 0.2 11.6 0.7 2.0 1 1 1 2 2 2 0 Prefoldin subunit Tektin PF03148.14 gi|119720636|ref|YP_921131.1| - 0.057 12.2 2.4 0.067 11.9 2.4 1.1 1 0 0 1 1 1 0 Tektin family OEP PF02321.18 gi|119720636|ref|YP_921131.1| - 0.06 13.1 6.3 0.068 13.0 6.3 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein Pox_A_type_inc PF04508.12 gi|119720636|ref|YP_921131.1| - 0.067 13.1 1.1 0.25 11.3 0.0 2.4 2 1 1 3 3 1 0 Viral A-type inclusion protein repeat XhlA PF10779.9 gi|119720636|ref|YP_921131.1| - 0.069 13.4 0.4 0.069 13.4 0.4 2.5 1 1 1 2 2 2 0 Haemolysin XhlA Tom5 PF10642.9 gi|119720636|ref|YP_921131.1| - 0.07 13.2 1.3 0.14 12.2 0.2 2.0 2 0 0 2 2 1 0 Mitochondrial import receptor subunit or translocase Bacillus_HBL PF05791.11 gi|119720636|ref|YP_921131.1| - 0.07 13.0 0.2 0.083 12.7 0.2 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) TSC22 PF01166.18 gi|119720636|ref|YP_921131.1| - 0.072 13.4 0.3 0.11 12.8 0.3 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family CCDC144C PF14915.6 gi|119720636|ref|YP_921131.1| - 0.079 12.1 4.8 0.1 11.7 4.8 1.2 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region MT PF12777.7 gi|119720636|ref|YP_921131.1| - 0.081 11.9 0.0 0.083 11.9 0.0 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor FemAB PF02388.16 gi|119720636|ref|YP_921131.1| - 0.083 11.8 0.0 0.088 11.7 0.0 1.0 1 0 0 1 1 1 0 FemAB family TMPIT PF07851.13 gi|119720636|ref|YP_921131.1| - 0.088 12.0 0.1 0.1 11.8 0.1 1.0 1 0 0 1 1 1 0 TMPIT-like protein Swi5 PF07061.11 gi|119720636|ref|YP_921131.1| - 0.091 12.9 4.0 0.17 12.0 0.8 2.0 1 1 1 2 2 2 0 Swi5 COG6 PF06419.11 gi|119720636|ref|YP_921131.1| - 0.095 10.9 2.4 0.11 10.7 2.4 1.0 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 TolA_bind_tri PF16331.5 gi|119720636|ref|YP_921131.1| - 0.1 12.7 3.6 0.15 12.2 3.6 1.2 1 0 0 1 1 1 0 TolA binding protein trimerisation KxDL PF10241.9 gi|119720636|ref|YP_921131.1| - 0.1 12.9 1.3 0.19 12.0 0.7 1.6 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF3552 PF12072.8 gi|119720636|ref|YP_921131.1| - 0.11 11.9 10.9 1.4 8.3 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) HAUS-augmin3 PF14932.6 gi|119720636|ref|YP_921131.1| - 0.11 12.0 3.7 0.14 11.8 3.7 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 CLZ PF16526.5 gi|119720636|ref|YP_921131.1| - 0.12 12.8 3.5 0.45 10.9 3.5 1.8 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Atg14 PF10186.9 gi|119720636|ref|YP_921131.1| - 0.12 11.4 3.7 0.14 11.2 3.7 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4763 PF15960.5 gi|119720636|ref|YP_921131.1| - 0.15 11.4 3.6 0.17 11.1 3.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) Nas2_N PF18265.1 gi|119720636|ref|YP_921131.1| - 0.15 12.0 0.7 5.9 6.9 0.0 2.1 1 1 1 2 2 2 0 Nas2 N_terminal domain Sec2p PF06428.11 gi|119720636|ref|YP_921131.1| - 0.17 11.9 3.7 0.25 11.4 2.9 1.6 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p DLP_helical PF18709.1 gi|119720636|ref|YP_921131.1| - 0.18 10.9 2.5 0.23 10.6 2.5 1.1 1 0 0 1 1 1 0 Dynamin-like helical domain Seryl_tRNA_N PF02403.22 gi|119720636|ref|YP_921131.1| - 0.18 12.0 3.6 0.31 11.3 3.6 1.4 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain LPP PF04728.13 gi|119720636|ref|YP_921131.1| - 0.19 12.1 7.1 1.4 9.4 3.4 2.1 1 1 1 2 2 2 0 Lipoprotein leucine-zipper DUF4140 PF13600.6 gi|119720636|ref|YP_921131.1| - 0.2 12.1 7.2 1.2 9.6 7.2 1.9 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) SlyX PF04102.12 gi|119720636|ref|YP_921131.1| - 0.2 12.3 3.3 0.36 11.5 3.3 1.4 1 1 0 1 1 1 0 SlyX UPF0242 PF06785.11 gi|119720636|ref|YP_921131.1| - 0.2 11.7 4.5 0.24 11.5 4.5 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF724 PF05266.14 gi|119720636|ref|YP_921131.1| - 0.2 11.4 1.9 0.27 11.1 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) IFT57 PF10498.9 gi|119720636|ref|YP_921131.1| - 0.21 10.5 2.5 0.23 10.4 2.5 1.0 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 APG6_N PF17675.1 gi|119720636|ref|YP_921131.1| - 0.21 12.1 8.3 0.25 11.9 8.3 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region Macoilin PF09726.9 gi|119720636|ref|YP_921131.1| - 0.22 10.0 3.5 0.28 9.7 3.5 1.0 1 0 0 1 1 1 0 Macoilin family TMF_TATA_bd PF12325.8 gi|119720636|ref|YP_921131.1| - 0.24 11.7 5.8 0.34 11.1 5.8 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Sec34 PF04136.15 gi|119720636|ref|YP_921131.1| - 0.24 11.3 2.2 0.28 11.0 2.2 1.1 1 0 0 1 1 1 0 Sec34-like family DUF16 PF01519.16 gi|119720636|ref|YP_921131.1| - 0.25 11.8 1.4 0.33 11.5 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF16 Prefoldin PF02996.17 gi|119720636|ref|YP_921131.1| - 0.26 11.2 3.1 6.6 6.7 0.4 1.9 1 1 1 2 2 2 0 Prefoldin subunit Sugarporin_N PF11471.8 gi|119720636|ref|YP_921131.1| - 0.27 11.2 8.6 0.53 10.3 8.6 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension DivIC PF04977.15 gi|119720636|ref|YP_921131.1| - 0.28 11.0 5.1 0.39 10.5 3.8 1.7 1 1 1 2 2 2 0 Septum formation initiator JIP_LZII PF16471.5 gi|119720636|ref|YP_921131.1| - 0.29 11.3 3.0 0.76 10.0 3.0 1.8 1 1 0 1 1 1 0 JNK-interacting protein leucine zipper II YtxH PF12732.7 gi|119720636|ref|YP_921131.1| - 0.31 11.6 5.0 0.85 10.2 0.3 2.3 2 0 0 2 2 2 0 YtxH-like protein Spc24 PF08286.11 gi|119720636|ref|YP_921131.1| - 0.33 11.2 3.8 0.62 10.3 3.8 1.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DHR10 PF18595.1 gi|119720636|ref|YP_921131.1| - 0.34 11.0 7.7 0.56 10.3 7.7 1.3 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DUF4407 PF14362.6 gi|119720636|ref|YP_921131.1| - 0.36 10.2 6.1 0.13 11.6 3.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3138 PF11336.8 gi|119720636|ref|YP_921131.1| - 0.38 9.3 3.3 1.4 7.5 3.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3138) YscO PF07321.12 gi|119720636|ref|YP_921131.1| - 0.44 10.5 7.0 1.8 8.5 7.0 1.7 1 1 0 1 1 1 0 Type III secretion protein YscO ZapB PF06005.12 gi|119720636|ref|YP_921131.1| - 0.45 11.0 4.9 0.6 10.6 4.9 1.2 1 0 0 1 1 1 0 Cell division protein ZapB Prominin PF05478.11 gi|119720636|ref|YP_921131.1| - 0.45 8.4 1.3 0.55 8.1 1.3 1.1 1 0 0 1 1 1 0 Prominin DUF3584 PF12128.8 gi|119720636|ref|YP_921131.1| - 0.46 7.9 3.7 0.55 7.7 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Cnn_1N PF07989.11 gi|119720636|ref|YP_921131.1| - 0.54 10.5 4.6 5.9 7.1 0.3 2.1 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 EspB PF05802.11 gi|119720636|ref|YP_921131.1| - 0.61 10.0 5.5 1.3 9.0 0.6 2.0 1 1 1 2 2 2 0 Enterobacterial EspB protein Uso1_p115_C PF04871.13 gi|119720636|ref|YP_921131.1| - 0.71 10.3 8.0 1.4 9.3 8.1 1.5 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF883 PF05957.13 gi|119720636|ref|YP_921131.1| - 3.5 8.3 8.7 33 5.2 8.7 2.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF2283 PF10049.9 gi|119720637|ref|YP_921132.1| - 2.6e-06 27.6 0.1 3.4e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Polbeta PF18765.1 gi|119720639|ref|YP_921134.1| - 6.5e-25 87.0 0.0 1.1e-24 86.3 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|119720639|ref|YP_921134.1| - 1.5e-20 73.2 0.0 5e-20 71.5 0.0 1.9 3 0 0 3 3 3 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|119720639|ref|YP_921134.1| - 2.7e-09 37.2 0.1 5.4e-09 36.2 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain XhlA PF10779.9 gi|119720640|ref|YP_921135.1| - 3.7e-10 39.9 2.1 0.0051 17.0 0.3 3.8 1 1 2 3 3 3 3 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|119720640|ref|YP_921135.1| - 8.2e-10 38.8 3.5 0.00028 21.1 0.0 3.7 2 1 1 3 3 2 2 ABC transporter C-terminal domain Tropomyosin PF00261.20 gi|119720640|ref|YP_921135.1| - 8.8e-10 38.4 8.2 8.8e-10 38.4 8.2 1.9 2 0 0 2 2 2 1 Tropomyosin FlaC_arch PF05377.11 gi|119720640|ref|YP_921135.1| - 1.4e-08 35.0 5.4 0.08 13.3 0.0 3.7 3 1 1 4 4 3 2 Flagella accessory protein C (FlaC) MscS_porin PF12795.7 gi|119720640|ref|YP_921135.1| - 7.9e-08 32.1 0.0 0.01 15.4 0.0 2.4 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain CCDC-167 PF15188.6 gi|119720640|ref|YP_921135.1| - 7.4e-07 29.4 10.3 0.0068 16.7 3.2 4.1 1 1 1 2 2 2 2 Coiled-coil domain-containing protein 167 Tropomyosin_1 PF12718.7 gi|119720640|ref|YP_921135.1| - 7.8e-07 29.3 4.0 7.8e-07 29.3 4.0 2.2 2 0 0 2 2 2 1 Tropomyosin like Prefoldin_2 PF01920.20 gi|119720640|ref|YP_921135.1| - 1.6e-06 28.0 3.6 0.063 13.2 0.3 4.1 2 1 2 4 4 4 1 Prefoldin subunit CCDC53 PF10152.9 gi|119720640|ref|YP_921135.1| - 2e-06 28.3 0.6 0.59 10.5 0.1 3.2 1 1 2 3 3 3 1 Subunit CCDC53 of WASH complex Snapin_Pallidin PF14712.6 gi|119720640|ref|YP_921135.1| - 2.5e-06 27.8 0.4 0.13 12.7 0.0 4.2 2 1 2 4 4 3 1 Snapin/Pallidin Sugarporin_N PF11471.8 gi|119720640|ref|YP_921135.1| - 2.6e-06 27.3 25.9 0.0085 16.0 0.6 5.4 2 1 5 7 7 5 3 Maltoporin periplasmic N-terminal extension DUF1664 PF07889.12 gi|119720640|ref|YP_921135.1| - 2.6e-06 27.5 0.4 0.00015 21.7 0.1 2.6 2 1 1 3 3 2 1 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|119720640|ref|YP_921135.1| - 6.2e-06 26.3 0.2 0.00031 20.8 0.1 2.4 1 1 1 2 2 2 1 Laminin Domain II Exonuc_VII_L PF02601.15 gi|119720640|ref|YP_921135.1| - 7.4e-06 25.7 0.1 2.1e-05 24.3 0.1 1.8 1 1 0 1 1 1 1 Exonuclease VII, large subunit EzrA PF06160.12 gi|119720640|ref|YP_921135.1| - 8.7e-06 24.2 0.1 0.0023 16.2 0.1 2.4 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA DUF16 PF01519.16 gi|119720640|ref|YP_921135.1| - 1.1e-05 25.9 2.0 0.0018 18.7 0.2 3.1 1 1 3 4 4 4 2 Protein of unknown function DUF16 NPV_P10 PF05531.12 gi|119720640|ref|YP_921135.1| - 1.5e-05 25.4 0.0 0.12 12.8 0.0 3.1 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein CLZ PF16526.5 gi|119720640|ref|YP_921135.1| - 2.6e-05 24.5 6.1 1.5 9.3 3.9 4.1 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Nup54 PF13874.6 gi|119720640|ref|YP_921135.1| - 3e-05 24.2 1.4 6.3e-05 23.1 0.4 2.0 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 HrpB7 PF09486.10 gi|119720640|ref|YP_921135.1| - 5.4e-05 23.6 11.0 0.018 15.4 0.5 3.5 1 1 2 4 4 4 2 Bacterial type III secretion protein (HrpB7) RmuC PF02646.16 gi|119720640|ref|YP_921135.1| - 5.5e-05 22.4 0.2 0.055 12.6 0.1 2.4 1 1 1 2 2 2 1 RmuC family Prefoldin_3 PF13758.6 gi|119720640|ref|YP_921135.1| - 6.2e-05 23.0 2.2 2.3 8.4 0.0 4.1 3 1 1 4 4 3 0 Prefoldin subunit FPP PF05911.11 gi|119720640|ref|YP_921135.1| - 6.6e-05 21.3 0.2 9.7e-05 20.8 0.2 1.3 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil Myosin_tail_1 PF01576.19 gi|119720640|ref|YP_921135.1| - 9.6e-05 20.4 9.5 0.00015 19.8 9.5 1.3 1 1 0 1 1 1 1 Myosin tail SesA PF17107.5 gi|119720640|ref|YP_921135.1| - 0.00012 22.2 0.2 1.8 8.8 0.0 3.6 2 1 1 3 3 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases FliJ PF02050.16 gi|119720640|ref|YP_921135.1| - 0.00012 22.3 0.5 0.035 14.3 0.1 2.7 2 1 2 4 4 3 2 Flagellar FliJ protein TRPM_tetra PF16519.5 gi|119720640|ref|YP_921135.1| - 0.00014 21.9 1.7 2.9 8.0 0.3 4.0 1 1 3 4 4 4 0 Tetramerisation domain of TRPM Baculo_PEP_C PF04513.12 gi|119720640|ref|YP_921135.1| - 0.00016 21.7 0.0 0.013 15.5 0.0 2.4 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus ATG16 PF08614.11 gi|119720640|ref|YP_921135.1| - 0.00017 21.9 4.3 0.00049 20.4 4.1 1.9 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF4795 PF16043.5 gi|119720640|ref|YP_921135.1| - 0.00018 21.2 0.1 0.0056 16.3 0.1 2.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) Matrilin_ccoil PF10393.9 gi|119720640|ref|YP_921135.1| - 0.00025 20.8 6.1 0.36 10.7 0.1 4.6 2 2 0 3 3 3 1 Trimeric coiled-coil oligomerisation domain of matrilin DUF3584 PF12128.8 gi|119720640|ref|YP_921135.1| - 0.00027 18.6 1.5 0.00035 18.3 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) UPF0184 PF03670.13 gi|119720640|ref|YP_921135.1| - 0.00028 21.2 0.2 0.94 9.9 0.0 3.6 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0184) GAS PF13851.6 gi|119720640|ref|YP_921135.1| - 0.00032 20.1 2.3 0.00076 18.9 0.4 2.4 2 1 0 2 2 1 1 Growth-arrest specific micro-tubule binding Flagellin_C PF00700.21 gi|119720640|ref|YP_921135.1| - 0.00033 20.9 0.1 0.42 11.0 0.0 3.1 1 1 2 3 3 3 1 Bacterial flagellin C-terminal helical region DUF4164 PF13747.6 gi|119720640|ref|YP_921135.1| - 0.00038 20.7 12.8 0.092 13.0 4.9 2.7 1 1 1 2 2 2 2 Domain of unknown function (DUF4164) Laminin_I PF06008.14 gi|119720640|ref|YP_921135.1| - 0.00038 20.2 2.1 0.0012 18.6 0.3 2.3 2 1 0 2 2 1 1 Laminin Domain I IFT57 PF10498.9 gi|119720640|ref|YP_921135.1| - 0.00042 19.4 0.0 0.024 13.6 0.1 1.9 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|119720640|ref|YP_921135.1| - 0.00049 19.1 1.4 0.00049 19.1 1.4 2.1 1 1 1 2 2 2 1 Spc7 kinetochore protein V-SNARE_C PF12352.8 gi|119720640|ref|YP_921135.1| - 0.00058 20.1 0.2 2.9 8.2 0.1 3.8 2 2 2 4 4 4 0 Snare region anchored in the vesicle membrane C-terminus COG2 PF06148.11 gi|119720640|ref|YP_921135.1| - 0.00083 19.5 6.9 0.24 11.5 1.3 3.4 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 Vac_Fusion PF02346.16 gi|119720640|ref|YP_921135.1| - 0.001 18.7 3.6 2.4 7.9 0.1 3.8 1 1 2 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 SKA2 PF16740.5 gi|119720640|ref|YP_921135.1| - 0.001 18.8 0.1 0.39 10.5 0.0 3.5 1 1 1 3 3 3 1 Spindle and kinetochore-associated protein 2 DUF2802 PF10975.8 gi|119720640|ref|YP_921135.1| - 0.0014 18.7 5.9 7.6 6.7 0.1 4.9 1 1 2 4 4 3 0 Protein of unknown function (DUF2802) Tektin PF03148.14 gi|119720640|ref|YP_921135.1| - 0.0018 17.1 0.2 0.013 14.3 0.2 2.0 1 1 0 1 1 1 1 Tektin family DASH_Spc19 PF08287.11 gi|119720640|ref|YP_921135.1| - 0.002 18.0 8.4 0.25 11.2 0.8 3.4 1 1 2 3 3 3 1 Spc19 CENP-F_leu_zip PF10473.9 gi|119720640|ref|YP_921135.1| - 0.0021 18.1 5.9 0.0021 18.1 5.9 2.0 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4201 PF13870.6 gi|119720640|ref|YP_921135.1| - 0.0021 17.8 0.7 0.13 12.0 0.1 2.7 2 1 1 3 3 2 1 Domain of unknown function (DUF4201) Nsp1_C PF05064.13 gi|119720640|ref|YP_921135.1| - 0.0022 17.8 0.4 3.4 7.5 0.0 3.1 1 1 1 2 2 2 0 Nsp1-like C-terminal region KxDL PF10241.9 gi|119720640|ref|YP_921135.1| - 0.0025 18.1 0.1 14 6.1 0.0 3.5 1 1 3 4 4 4 0 Uncharacterized conserved protein MtrG PF04210.13 gi|119720640|ref|YP_921135.1| - 0.0026 17.6 5.8 6.6 6.7 0.1 5.0 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G FH2 PF02181.23 gi|119720640|ref|YP_921135.1| - 0.0031 16.7 2.6 1.5 7.9 0.1 2.9 1 1 1 3 3 3 0 Formin Homology 2 Domain Trns_repr_metal PF02583.17 gi|119720640|ref|YP_921135.1| - 0.0045 17.3 8.0 0.049 14.0 0.7 3.7 1 1 2 3 3 3 1 Metal-sensitive transcriptional repressor DUF812 PF05667.11 gi|119720640|ref|YP_921135.1| - 0.005 15.8 0.8 0.2 10.5 0.3 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF812) Lebercilin PF15619.6 gi|119720640|ref|YP_921135.1| - 0.0051 16.5 2.0 0.0051 16.5 2.0 2.0 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease Leu_zip PF15294.6 gi|119720640|ref|YP_921135.1| - 0.0055 16.3 0.1 0.01 15.4 0.1 1.5 1 0 0 1 1 1 1 Leucine zipper DUF948 PF06103.11 gi|119720640|ref|YP_921135.1| - 0.0055 16.9 0.1 1.4 9.3 0.0 3.0 2 1 0 2 2 1 1 Bacterial protein of unknown function (DUF948) DUF2730 PF10805.8 gi|119720640|ref|YP_921135.1| - 0.0059 16.7 2.4 0.22 11.6 0.4 3.6 2 1 1 3 3 2 1 Protein of unknown function (DUF2730) HemX PF04375.14 gi|119720640|ref|YP_921135.1| - 0.0063 15.8 0.1 0.074 12.3 0.0 2.4 2 1 0 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase DUF745 PF05335.13 gi|119720640|ref|YP_921135.1| - 0.0065 16.2 0.1 0.017 14.8 0.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF745) SlyX PF04102.12 gi|119720640|ref|YP_921135.1| - 0.0067 17.0 5.1 0.11 13.1 1.1 3.6 1 1 4 5 5 4 2 SlyX DASH_Duo1 PF08651.10 gi|119720640|ref|YP_921135.1| - 0.0072 16.1 0.0 4.7 7.0 0.0 3.6 1 1 4 5 5 5 0 DASH complex subunit Duo1 DUF3450 PF11932.8 gi|119720640|ref|YP_921135.1| - 0.0075 15.6 0.0 1 8.6 0.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) YkyA PF10368.9 gi|119720640|ref|YP_921135.1| - 0.0083 15.8 1.3 0.56 9.8 0.0 2.7 2 1 1 3 3 3 1 Putative cell-wall binding lipoprotein Syntaxin-6_N PF09177.11 gi|119720640|ref|YP_921135.1| - 0.0085 16.6 2.6 0.15 12.6 0.2 2.5 1 1 1 2 2 2 1 Syntaxin 6, N-terminal AAA_13 PF13166.6 gi|119720640|ref|YP_921135.1| - 0.0094 14.7 0.2 0.04 12.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain TACC_C PF05010.14 gi|119720640|ref|YP_921135.1| - 0.0099 15.7 2.0 0.034 13.9 0.0 2.4 2 1 1 3 3 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF4349 PF14257.6 gi|119720640|ref|YP_921135.1| - 0.01 15.3 12.4 0.36 10.3 2.3 3.8 2 1 1 4 4 3 0 Domain of unknown function (DUF4349) DUF3552 PF12072.8 gi|119720640|ref|YP_921135.1| - 0.011 15.2 12.4 0.099 12.1 4.5 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3552) DUF241 PF03087.14 gi|119720640|ref|YP_921135.1| - 0.011 15.5 9.9 2.8 7.7 1.5 3.8 2 1 2 4 4 3 0 Arabidopsis protein of unknown function WASH_WAHD PF11945.8 gi|119720640|ref|YP_921135.1| - 0.011 15.2 0.5 1.6 8.2 0.1 3.0 1 1 3 4 4 4 0 WAHD domain of WASH complex HMMR_N PF15905.5 gi|119720640|ref|YP_921135.1| - 0.012 15.1 4.8 0.015 14.7 2.5 2.4 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal APG17 PF04108.12 gi|119720640|ref|YP_921135.1| - 0.012 14.7 2.2 0.1 11.7 0.5 2.6 1 1 2 3 3 3 0 Autophagy protein Apg17 EcoEI_R_C PF08463.10 gi|119720640|ref|YP_921135.1| - 0.014 15.6 1.1 0.16 12.1 0.2 2.5 1 1 1 2 2 2 0 EcoEI R protein C-terminal HSBP1 PF06825.12 gi|119720640|ref|YP_921135.1| - 0.015 15.2 2.4 12 5.8 0.6 4.2 1 1 2 3 3 3 0 Heat shock factor binding protein 1 DUF4140 PF13600.6 gi|119720640|ref|YP_921135.1| - 0.017 15.6 9.1 7.9 7.0 0.1 3.8 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) Fmp27_WPPW PF10359.9 gi|119720640|ref|YP_921135.1| - 0.018 13.9 0.5 0.065 12.1 0.5 1.9 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain SNARE PF05739.19 gi|119720640|ref|YP_921135.1| - 0.021 14.8 4.6 1.1 9.3 0.1 4.3 4 2 1 5 5 3 0 SNARE domain Spectrin PF00435.21 gi|119720640|ref|YP_921135.1| - 0.022 15.2 1.2 0.27 11.7 0.7 2.9 1 1 1 2 2 1 0 Spectrin repeat ERM PF00769.19 gi|119720640|ref|YP_921135.1| - 0.023 14.5 5.6 0.043 13.6 5.7 1.6 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DHR10 PF18595.1 gi|119720640|ref|YP_921135.1| - 0.024 14.7 16.9 0.32 11.1 2.9 3.9 3 1 2 5 5 3 0 Designed helical repeat protein 10 domain ADIP PF11559.8 gi|119720640|ref|YP_921135.1| - 0.025 14.7 0.2 0.33 11.0 0.1 2.6 1 1 2 3 3 2 0 Afadin- and alpha -actinin-Binding MutS_III PF05192.18 gi|119720640|ref|YP_921135.1| - 0.027 14.7 5.3 0.55 10.4 2.9 3.0 2 1 0 2 2 2 0 MutS domain III Sec3_C PF09763.9 gi|119720640|ref|YP_921135.1| - 0.034 12.6 0.0 2.8 6.2 0.0 2.2 1 1 1 2 2 2 0 Exocyst complex component Sec3 HOOK PF05622.12 gi|119720640|ref|YP_921135.1| - 0.038 12.2 3.2 0.043 12.0 3.2 1.3 1 0 0 1 1 1 0 HOOK protein Vps5 PF09325.10 gi|119720640|ref|YP_921135.1| - 0.044 13.3 0.1 1.9 8.0 0.0 2.7 1 1 2 3 3 3 0 Vps5 C terminal like Fib_alpha PF08702.10 gi|119720640|ref|YP_921135.1| - 0.048 13.8 0.0 0.13 12.4 0.0 1.8 2 1 0 2 2 1 0 Fibrinogen alpha/beta chain family DUF724 PF05266.14 gi|119720640|ref|YP_921135.1| - 0.062 13.1 0.3 0.43 10.4 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Glyco_H_20C_C PF18088.1 gi|119720640|ref|YP_921135.1| - 0.063 13.1 11.6 1.3 8.8 1.0 3.9 1 1 2 3 3 3 0 Glycoside Hydrolase 20C C-terminal domain Cluap1 PF10234.9 gi|119720640|ref|YP_921135.1| - 0.064 12.6 0.9 4 6.7 1.0 2.4 1 1 1 2 2 2 0 Clusterin-associated protein-1 ISG65-75 PF11727.8 gi|119720640|ref|YP_921135.1| - 0.065 12.5 1.1 0.27 10.4 0.1 2.3 2 1 2 4 4 4 0 Invariant surface glycoprotein CCDC144C PF14915.6 gi|119720640|ref|YP_921135.1| - 0.072 12.2 2.9 0.72 8.9 0.4 2.5 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region FmiP_Thoc5 PF09766.9 gi|119720640|ref|YP_921135.1| - 0.084 12.1 0.5 3.6 6.8 0.1 2.7 1 1 2 3 3 2 0 Fms-interacting protein/Thoc5 Fez1 PF06818.15 gi|119720640|ref|YP_921135.1| - 0.098 13.1 5.3 1.3 9.4 5.3 2.2 1 1 0 1 1 1 0 Fez1 Occludin_ELL PF07303.13 gi|119720640|ref|YP_921135.1| - 0.11 13.3 0.0 3.1 8.6 0.0 2.7 1 1 1 2 2 2 0 Occludin homology domain Cep57_CLD PF14073.6 gi|119720640|ref|YP_921135.1| - 0.11 12.6 3.0 2.4 8.2 2.0 2.6 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 TMPIT PF07851.13 gi|119720640|ref|YP_921135.1| - 0.11 11.7 0.0 0.36 10.0 0.0 1.9 1 1 0 1 1 1 0 TMPIT-like protein T3SS_needle_E PF08988.10 gi|119720640|ref|YP_921135.1| - 0.12 12.6 3.3 2.8 8.1 0.6 3.5 1 1 2 3 3 3 0 Type III secretion system, cytoplasmic E component of needle MAD PF05557.13 gi|119720640|ref|YP_921135.1| - 0.13 10.6 8.3 0.19 10.0 7.4 1.7 1 1 0 1 1 1 0 Mitotic checkpoint protein DegS PF05384.11 gi|119720640|ref|YP_921135.1| - 0.14 11.6 4.2 3.1 7.2 4.2 2.8 1 1 0 1 1 1 0 Sensor protein DegS TelA PF05816.11 gi|119720640|ref|YP_921135.1| - 0.16 11.0 0.2 20 4.1 0.0 2.4 2 1 1 3 3 2 0 Toxic anion resistance protein (TelA) TPR_MLP1_2 PF07926.12 gi|119720640|ref|YP_921135.1| - 0.17 12.0 7.0 1.1 9.3 1.6 3.2 2 2 1 3 3 2 0 TPR/MLP1/MLP2-like protein DUF2333 PF10095.9 gi|119720640|ref|YP_921135.1| - 0.2 10.7 0.1 5.2 6.0 0.1 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2333) CorA PF01544.18 gi|119720640|ref|YP_921135.1| - 0.21 10.9 2.1 0.64 9.3 1.3 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein V_ATPase_I PF01496.19 gi|119720640|ref|YP_921135.1| - 0.22 9.4 0.1 0.42 8.5 0.1 1.4 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Dynactin_p22 PF07426.11 gi|119720640|ref|YP_921135.1| - 0.22 11.4 12.0 0.76 9.6 0.6 3.7 2 2 1 3 3 3 0 Dynactin subunit p22 TolA_bind_tri PF16331.5 gi|119720640|ref|YP_921135.1| - 0.22 11.6 0.2 0.12 12.5 2.9 3.5 3 1 2 5 5 2 0 TolA binding protein trimerisation PTRF_SDPR PF15237.6 gi|119720640|ref|YP_921135.1| - 0.25 10.9 3.5 1 8.9 1.2 2.7 1 1 1 2 2 2 0 PTRF/SDPR family Rx_N PF18052.1 gi|119720640|ref|YP_921135.1| - 0.33 11.2 11.3 8.6 6.7 3.4 4.2 1 1 1 3 3 3 0 Rx N-terminal domain PspA_IM30 PF04012.12 gi|119720640|ref|YP_921135.1| - 0.38 10.3 6.7 0.13 11.8 1.6 2.5 2 2 0 1 1 1 0 PspA/IM30 family YscO PF07321.12 gi|119720640|ref|YP_921135.1| - 0.54 10.2 11.8 0.16 11.9 3.3 3.0 2 1 1 3 3 3 0 Type III secretion protein YscO MPS2 PF17060.5 gi|119720640|ref|YP_921135.1| - 0.69 9.1 5.8 0.14 11.4 0.5 2.0 1 1 1 2 2 2 0 Monopolar spindle protein 2 GreA_GreB_N PF03449.15 gi|119720640|ref|YP_921135.1| - 0.78 9.9 11.4 18 5.5 0.2 5.1 3 2 2 5 5 4 0 Transcription elongation factor, N-terminal Uds1 PF15456.6 gi|119720640|ref|YP_921135.1| - 0.84 9.8 8.1 3.5 7.8 3.9 3.4 2 1 0 2 2 1 0 Up-regulated During Septation Cortex-I_coil PF09304.10 gi|119720640|ref|YP_921135.1| - 0.91 9.8 12.3 2.6 8.3 5.1 3.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil HalX PF08663.10 gi|119720640|ref|YP_921135.1| - 1 9.8 19.9 7.2 7.0 1.9 6.0 2 1 3 5 5 5 0 HalX domain Tnp_22_trimer PF17489.2 gi|119720640|ref|YP_921135.1| - 2.3 8.3 9.2 33 4.6 0.1 4.3 4 1 0 4 4 4 0 L1 transposable element trimerization domain TMF_TATA_bd PF12325.8 gi|119720640|ref|YP_921135.1| - 2.5 8.4 10.8 3.6 7.9 1.9 3.2 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding APG6_N PF17675.1 gi|119720640|ref|YP_921135.1| - 3.3 8.2 11.0 0.84 10.2 3.9 2.8 1 1 2 3 3 3 0 Apg6 coiled-coil region DUF4200 PF13863.6 gi|119720640|ref|YP_921135.1| - 3.5 8.0 7.5 0.48 10.8 0.2 2.8 2 2 1 3 3 1 0 Domain of unknown function (DUF4200) Val_tRNA-synt_C PF10458.9 gi|119720640|ref|YP_921135.1| - 3.6 8.0 16.1 77 3.7 1.4 5.9 2 1 2 4 4 4 0 Valyl tRNA synthetase tRNA binding arm CEP63 PF17045.5 gi|119720640|ref|YP_921135.1| - 3.6 7.4 9.7 11 5.9 2.8 2.5 1 1 0 2 2 2 0 Centrosomal protein of 63 kDa Asp4 PF16996.5 gi|119720640|ref|YP_921135.1| - 3.6 7.4 7.2 2 8.3 0.1 3.5 3 1 0 3 3 3 0 Accessory secretory protein Sec Asp4 PspB PF06667.12 gi|119720640|ref|YP_921135.1| - 8.1 6.6 5.9 11 6.1 0.4 3.1 1 1 2 3 3 2 0 Phage shock protein B Polysacc_synt PF01943.17 gi|119720641|ref|YP_921136.1| - 1.2e-24 87.1 23.5 2.2e-24 86.3 17.0 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|119720641|ref|YP_921136.1| - 1.8e-22 80.0 5.7 1.8e-22 80.0 5.7 1.9 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|119720641|ref|YP_921136.1| - 9.5e-10 38.7 7.7 9.5e-10 38.7 7.7 4.0 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain CbiM PF01891.16 gi|119720642|ref|YP_921137.1| - 2.6e-64 216.9 19.2 2.9e-64 216.7 19.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.6 gi|119720643|ref|YP_921138.1| - 4.6e-09 36.1 0.2 9.7e-09 35.0 0.2 1.5 1 1 0 1 1 1 1 PDGLE domain DUF4014 PF13198.6 gi|119720643|ref|YP_921138.1| - 0.12 12.8 0.5 0.25 11.8 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4014) TPPK_C PF12555.8 gi|119720643|ref|YP_921138.1| - 2.6 8.2 8.9 2.2 8.4 2.5 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal CbiQ PF02361.16 gi|119720644|ref|YP_921139.1| - 3e-13 49.9 9.6 7e-13 48.7 9.6 1.6 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|119720645|ref|YP_921140.1| - 5.1e-33 114.5 0.0 7.2e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720645|ref|YP_921140.1| - 3.6e-16 59.8 0.1 8.1e-08 32.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119720645|ref|YP_921140.1| - 2.5e-05 23.9 0.1 4.7e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|119720645|ref|YP_921140.1| - 0.00012 21.6 0.0 0.085 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119720645|ref|YP_921140.1| - 0.00026 21.4 0.5 0.00042 20.7 0.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|119720645|ref|YP_921140.1| - 0.00084 19.9 0.0 0.0013 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|119720645|ref|YP_921140.1| - 0.0011 18.5 0.3 0.0025 17.4 0.3 1.6 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|119720645|ref|YP_921140.1| - 0.0013 18.4 0.0 0.0036 17.0 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|119720645|ref|YP_921140.1| - 0.0073 16.2 0.2 0.016 15.2 0.2 1.6 1 1 0 1 1 1 1 NACHT domain AAA_15 PF13175.6 gi|119720645|ref|YP_921140.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|119720645|ref|YP_921140.1| - 0.017 15.4 0.1 0.03 14.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|119720645|ref|YP_921140.1| - 0.018 15.2 0.1 0.04 14.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119720645|ref|YP_921140.1| - 0.022 15.2 0.0 0.037 14.5 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|119720645|ref|YP_921140.1| - 0.038 13.7 0.2 0.1 12.3 0.1 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|119720645|ref|YP_921140.1| - 0.065 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RecA PF00154.21 gi|119720645|ref|YP_921140.1| - 0.079 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|119720645|ref|YP_921140.1| - 0.093 12.5 0.0 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|119720645|ref|YP_921140.1| - 0.098 12.7 0.2 0.2 11.7 0.2 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|119720645|ref|YP_921140.1| - 0.1 13.2 0.0 0.17 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|119720645|ref|YP_921140.1| - 0.15 10.9 0.1 0.21 10.4 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) cobW PF02492.19 gi|119720645|ref|YP_921140.1| - 0.16 11.6 0.3 0.26 10.9 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|119720645|ref|YP_921140.1| - 0.16 12.2 0.0 0.95 9.7 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|119720645|ref|YP_921140.1| - 0.17 11.2 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|119720645|ref|YP_921140.1| - 0.17 12.2 0.1 1.6 9.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|119720645|ref|YP_921140.1| - 0.18 11.0 0.1 1.7 7.8 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.6 gi|119720645|ref|YP_921140.1| - 0.25 11.4 0.0 0.59 10.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain Glycos_transf_1 PF00534.20 gi|119720646|ref|YP_921141.1| - 1.5e-21 76.7 0.0 2.7e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720646|ref|YP_921141.1| - 1.8e-17 64.0 0.0 3.5e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|119720647|ref|YP_921142.1| - 1.4e-28 99.6 0.0 2.7e-28 98.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720647|ref|YP_921142.1| - 5.6e-27 94.8 0.0 2.7e-26 92.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720647|ref|YP_921142.1| - 8.1e-13 48.7 1.0 5.1e-12 46.1 1.1 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119720647|ref|YP_921142.1| - 5.8e-07 30.1 6.3 6.4e-07 30.0 4.9 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119720647|ref|YP_921142.1| - 1.2e-06 28.8 0.0 3.5e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|119720648|ref|YP_921143.1| - 5.1e-18 65.5 0.0 7.1e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|119720648|ref|YP_921143.1| - 2.8e-14 53.6 0.1 8.8e-14 51.9 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|119720648|ref|YP_921143.1| - 4.1e-06 26.8 0.0 7.3e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|119720648|ref|YP_921143.1| - 0.001 18.6 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|119720649|ref|YP_921144.1| - 1.8e-39 135.0 0.0 2.5e-39 134.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119720649|ref|YP_921144.1| - 1.7e-33 115.9 0.1 3.1e-33 115.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119720649|ref|YP_921144.1| - 3.6e-21 75.9 5.6 4.9e-19 69.0 3.9 2.7 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119720649|ref|YP_921144.1| - 1.3e-17 64.7 14.8 3.8e-15 56.7 10.1 3.7 2 2 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119720649|ref|YP_921144.1| - 3e-16 59.6 0.0 5.1e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|119720649|ref|YP_921144.1| - 0.00024 20.1 0.0 0.00042 19.3 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_5 PF08323.11 gi|119720649|ref|YP_921144.1| - 0.0006 19.6 1.2 0.063 13.0 0.2 2.9 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|119720649|ref|YP_921144.1| - 0.0051 16.8 0.0 0.098 12.7 0.0 2.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.13 gi|119720649|ref|YP_921144.1| - 0.19 10.2 0.0 0.31 9.5 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase DUF58 PF01882.18 gi|119720651|ref|YP_921146.1| - 3.7e-17 62.4 0.1 8.3e-17 61.2 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.14 gi|119720651|ref|YP_921146.1| - 4.6e-06 26.2 0.0 0.0015 18.0 0.0 2.2 1 1 1 2 2 2 2 VWA domain containing CoxE-like protein HrcA_DNA-bdg PF03444.15 gi|119720651|ref|YP_921146.1| - 0.057 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AAA_3 PF07726.11 gi|119720653|ref|YP_921148.1| - 9.8e-54 180.7 0.2 1e-52 177.4 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|119720653|ref|YP_921148.1| - 9.5e-14 51.0 0.2 2.2e-13 49.8 0.2 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|119720653|ref|YP_921148.1| - 1e-12 48.3 0.0 3.9e-12 46.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119720653|ref|YP_921148.1| - 8.3e-05 23.0 0.0 0.00037 20.9 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|119720653|ref|YP_921148.1| - 0.00032 20.1 0.5 0.0037 16.7 0.1 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|119720653|ref|YP_921148.1| - 0.00079 19.2 0.1 0.022 14.5 0.1 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|119720653|ref|YP_921148.1| - 0.0072 16.7 0.1 0.017 15.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|119720653|ref|YP_921148.1| - 0.013 15.3 0.1 0.057 13.1 0.1 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.6 gi|119720653|ref|YP_921148.1| - 0.091 12.9 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119720653|ref|YP_921148.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MCM PF00493.23 gi|119720653|ref|YP_921148.1| - 0.14 11.2 0.0 8.9 5.3 0.0 2.2 2 0 0 2 2 2 0 MCM P-loop domain MCM_lid PF17855.1 gi|119720653|ref|YP_921148.1| - 0.15 12.5 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain ABC_tran PF00005.27 gi|119720654|ref|YP_921149.1| - 1.1e-22 81.0 0.0 1.9e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720654|ref|YP_921149.1| - 2.1e-11 44.2 0.7 7.5e-06 26.0 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|119720654|ref|YP_921149.1| - 0.00068 19.4 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119720654|ref|YP_921149.1| - 0.00082 18.9 0.1 0.89 8.9 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ATP_bind_1 PF03029.17 gi|119720654|ref|YP_921149.1| - 0.0039 17.0 0.0 0.0066 16.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|119720654|ref|YP_921149.1| - 0.0072 16.6 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|119720654|ref|YP_921149.1| - 0.0096 15.6 0.2 0.015 15.0 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|119720654|ref|YP_921149.1| - 0.011 15.3 0.3 0.043 13.4 0.3 2.0 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|119720654|ref|YP_921149.1| - 0.036 13.1 0.3 0.065 12.2 0.3 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|119720654|ref|YP_921149.1| - 0.081 12.7 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119720654|ref|YP_921149.1| - 0.085 13.3 0.1 0.13 12.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|119720654|ref|YP_921149.1| - 0.11 11.5 0.0 0.48 9.4 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|119720654|ref|YP_921149.1| - 0.14 12.0 1.3 0.27 11.1 0.9 1.6 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.6 gi|119720654|ref|YP_921149.1| - 0.15 12.4 0.6 0.29 11.5 0.6 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|119720654|ref|YP_921149.1| - 0.16 12.1 0.0 0.36 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC2_membrane_5 PF13346.6 gi|119720655|ref|YP_921150.1| - 0.42 10.1 6.7 1.2 8.7 6.6 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein VWA_2 PF13519.6 gi|119720657|ref|YP_921152.1| - 4e-19 69.2 0.0 7.1e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|119720657|ref|YP_921152.1| - 1.3e-12 48.4 0.0 1.8e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|119720657|ref|YP_921152.1| - 7.2e-06 25.6 0.0 1.5e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.9 gi|119720657|ref|YP_921152.1| - 0.0063 16.7 0.0 0.02 15.0 0.0 1.7 1 1 0 1 1 1 1 vWA found in TerF C terminus Radical_SAM PF04055.21 gi|119720657|ref|YP_921152.1| - 0.029 14.8 0.0 0.96 9.8 0.0 2.6 2 1 0 3 3 3 0 Radical SAM superfamily VWA_3 PF13768.6 gi|119720657|ref|YP_921152.1| - 0.043 13.8 0.0 0.079 12.9 0.0 1.5 1 1 0 1 1 1 0 von Willebrand factor type A domain BatA PF07584.11 gi|119720657|ref|YP_921152.1| - 0.28 11.6 8.2 1.2 9.5 3.9 2.9 2 1 0 2 2 2 0 Aerotolerance regulator N-terminal VWA PF00092.28 gi|119720658|ref|YP_921153.1| - 9.4e-13 48.8 0.0 1.3e-12 48.3 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|119720658|ref|YP_921153.1| - 7.8e-11 42.6 0.0 1.4e-10 41.7 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|119720658|ref|YP_921153.1| - 0.032 13.6 0.0 0.081 12.3 0.0 1.5 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein NMT1_2 PF13379.6 gi|119720659|ref|YP_921154.1| - 0.047 13.4 0.0 0.067 12.9 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family MCPsignal PF00015.21 gi|119720660|ref|YP_921155.1| - 0.00042 20.2 6.5 0.019 14.8 5.0 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain COG2 PF06148.11 gi|119720660|ref|YP_921155.1| - 0.0011 19.1 14.1 0.37 10.9 1.8 4.2 2 1 2 4 4 4 3 COG (conserved oligomeric Golgi) complex component, COG2 DUF632 PF04782.12 gi|119720660|ref|YP_921155.1| - 0.0011 18.4 22.2 0.033 13.5 14.4 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF632) SidE PF12252.8 gi|119720660|ref|YP_921155.1| - 0.0011 16.7 6.6 0.0014 16.3 6.6 1.1 1 0 0 1 1 1 1 Dot/Icm substrate protein APG6_N PF17675.1 gi|119720660|ref|YP_921155.1| - 0.0011 19.5 40.1 0.013 16.1 20.1 3.2 1 1 2 3 3 3 2 Apg6 coiled-coil region Snapin_Pallidin PF14712.6 gi|119720660|ref|YP_921155.1| - 0.003 17.9 10.0 1.2 9.6 2.1 3.9 1 1 2 3 3 3 2 Snapin/Pallidin Laminin_I PF06008.14 gi|119720660|ref|YP_921155.1| - 0.0038 17.0 11.0 0.0071 16.1 10.7 1.6 1 1 0 1 1 1 1 Laminin Domain I YabA PF06156.13 gi|119720660|ref|YP_921155.1| - 0.005 17.5 14.3 0.34 11.6 4.1 2.9 1 1 1 2 2 2 2 Initiation control protein YabA GAS PF13851.6 gi|119720660|ref|YP_921155.1| - 0.0054 16.1 20.5 0.0054 16.1 20.5 2.4 2 1 1 3 3 2 1 Growth-arrest specific micro-tubule binding DUF4763 PF15960.5 gi|119720660|ref|YP_921155.1| - 0.0073 15.6 10.5 0.16 11.3 0.6 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4763) Spc7 PF08317.11 gi|119720660|ref|YP_921155.1| - 0.0077 15.1 19.0 0.013 14.5 19.0 1.4 1 0 0 1 1 1 1 Spc7 kinetochore protein FUSC PF04632.12 gi|119720660|ref|YP_921155.1| - 0.0089 14.6 2.0 0.012 14.2 2.0 1.2 1 0 0 1 1 1 1 Fusaric acid resistance protein family TMPIT PF07851.13 gi|119720660|ref|YP_921155.1| - 0.013 14.8 15.9 0.016 14.4 3.6 2.1 1 1 1 2 2 2 0 TMPIT-like protein RPW8 PF05659.11 gi|119720660|ref|YP_921155.1| - 0.014 15.1 8.3 0.68 9.6 1.9 3.4 1 1 2 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF1664 PF07889.12 gi|119720660|ref|YP_921155.1| - 0.014 15.4 14.1 0.37 10.8 1.1 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|119720660|ref|YP_921155.1| - 0.015 14.0 9.5 0.019 13.6 9.5 1.2 1 0 0 1 1 1 0 AAA domain zf-C4H2 PF10146.9 gi|119720660|ref|YP_921155.1| - 0.015 15.6 19.7 0.25 11.6 12.6 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein SKA2 PF16740.5 gi|119720660|ref|YP_921155.1| - 0.017 14.9 8.8 0.083 12.7 1.2 3.4 2 1 1 3 3 2 0 Spindle and kinetochore-associated protein 2 DUF2968 PF11180.8 gi|119720660|ref|YP_921155.1| - 0.026 14.1 9.6 0.13 11.9 6.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) FCD PF07729.12 gi|119720660|ref|YP_921155.1| - 0.027 14.9 0.6 0.61 10.5 0.1 2.7 2 1 0 2 2 2 0 FCD domain HAP1_N PF04849.13 gi|119720660|ref|YP_921155.1| - 0.053 12.7 19.7 0.098 11.9 19.7 1.5 1 0 0 1 1 1 0 HAP1 N-terminal conserved region TMF_DNA_bd PF12329.8 gi|119720660|ref|YP_921155.1| - 0.054 13.5 34.1 0.14 12.2 9.4 3.4 3 1 1 4 4 3 0 TATA element modulatory factor 1 DNA binding DUF3450 PF11932.8 gi|119720660|ref|YP_921155.1| - 0.054 12.8 17.5 0.038 13.3 8.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF948 PF06103.11 gi|119720660|ref|YP_921155.1| - 0.072 13.4 2.9 16 5.8 1.5 3.6 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) E3_binding PF02817.17 gi|119720660|ref|YP_921155.1| - 0.073 13.4 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 e3 binding domain ERM PF00769.19 gi|119720660|ref|YP_921155.1| - 0.074 12.9 29.4 0.11 12.3 27.5 1.9 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF724 PF05266.14 gi|119720660|ref|YP_921155.1| - 0.085 12.7 18.3 0.053 13.3 7.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) bPH_6 PF10756.9 gi|119720660|ref|YP_921155.1| - 0.11 12.6 8.9 15 5.7 0.4 4.9 1 1 2 3 3 3 0 Bacterial PH domain IF-2B PF01008.17 gi|119720660|ref|YP_921155.1| - 0.12 11.5 3.3 2.1 7.5 2.4 2.5 1 1 1 2 2 2 0 Initiation factor 2 subunit family SlyX PF04102.12 gi|119720660|ref|YP_921155.1| - 0.14 12.8 18.6 1.9 9.1 2.1 4.5 2 1 2 5 5 4 0 SlyX Mod_r PF07200.13 gi|119720660|ref|YP_921155.1| - 0.14 12.3 19.7 1.9 8.6 8.8 2.7 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein PTRF_SDPR PF15237.6 gi|119720660|ref|YP_921155.1| - 0.14 11.8 11.6 0.081 12.5 5.9 2.3 1 1 1 2 2 2 0 PTRF/SDPR family KASH_CCD PF14662.6 gi|119720660|ref|YP_921155.1| - 0.14 11.9 23.3 0.54 10.0 22.7 2.1 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Seryl_tRNA_N PF02403.22 gi|119720660|ref|YP_921155.1| - 0.19 12.0 22.1 0.53 10.5 17.0 2.8 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain EzrA PF06160.12 gi|119720660|ref|YP_921155.1| - 0.2 9.8 18.7 11 4.0 18.4 2.4 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Cauli_DNA-bind PF03310.13 gi|119720660|ref|YP_921155.1| - 0.23 11.6 5.9 8.5 6.5 0.2 3.0 1 1 2 3 3 3 0 Caulimovirus DNA-binding protein FapA PF03961.13 gi|119720660|ref|YP_921155.1| - 0.24 10.0 18.3 1.1 7.7 5.9 2.1 1 1 1 2 2 2 0 Flagellar Assembly Protein A CENP-H PF05837.12 gi|119720660|ref|YP_921155.1| - 0.24 11.8 22.6 0.4 11.1 8.6 2.9 2 1 1 3 3 2 0 Centromere protein H (CENP-H) Occludin_ELL PF07303.13 gi|119720660|ref|YP_921155.1| - 0.27 12.0 8.2 3.4 8.4 2.1 2.9 1 1 2 3 3 3 0 Occludin homology domain Golgin_A5 PF09787.9 gi|119720660|ref|YP_921155.1| - 0.28 10.6 20.1 0.27 10.7 18.4 1.7 1 1 0 1 1 1 0 Golgin subfamily A member 5 Sec5 PF15469.6 gi|119720660|ref|YP_921155.1| - 0.28 11.0 18.8 1.3 8.8 3.9 2.9 1 1 1 2 2 2 0 Exocyst complex component Sec5 V_ATPase_I PF01496.19 gi|119720660|ref|YP_921155.1| - 0.28 9.0 7.3 0.35 8.7 7.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TelA PF05816.11 gi|119720660|ref|YP_921155.1| - 0.32 10.0 12.6 0.79 8.7 6.5 2.7 2 1 2 4 4 3 0 Toxic anion resistance protein (TelA) BRE1 PF08647.11 gi|119720660|ref|YP_921155.1| - 0.45 10.6 16.6 0.29 11.2 14.3 2.0 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase DUF4201 PF13870.6 gi|119720660|ref|YP_921155.1| - 0.49 10.1 20.4 0.98 9.1 6.4 2.8 2 1 1 3 3 2 0 Domain of unknown function (DUF4201) DUF2353 PF09789.9 gi|119720660|ref|YP_921155.1| - 0.49 9.7 14.9 0.18 11.1 11.6 1.6 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DUF4446 PF14584.6 gi|119720660|ref|YP_921155.1| - 0.51 10.3 10.5 4.3 7.3 1.2 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) BLOC1_2 PF10046.9 gi|119720660|ref|YP_921155.1| - 0.51 10.7 12.0 19 5.6 5.1 3.9 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG6 PF06419.11 gi|119720660|ref|YP_921155.1| - 0.52 8.5 6.7 0.44 8.7 1.8 2.0 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 Sec34 PF04136.15 gi|119720660|ref|YP_921155.1| - 0.52 10.2 4.5 3.3 7.6 1.1 2.4 1 1 1 2 2 2 0 Sec34-like family UPF0242 PF06785.11 gi|119720660|ref|YP_921155.1| - 0.56 10.3 23.0 1.7 8.7 10.4 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus CENP-F_leu_zip PF10473.9 gi|119720660|ref|YP_921155.1| - 0.69 9.9 30.8 0.092 12.8 22.6 2.4 2 1 1 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 S_4TM PF18159.1 gi|119720660|ref|YP_921155.1| - 0.79 9.0 10.8 0.61 9.3 8.6 1.8 1 1 0 1 1 1 0 SMODS-associating 4TM effector domain DUF4771 PF15995.5 gi|119720660|ref|YP_921155.1| - 0.93 9.7 7.6 6.5 7.0 6.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4771) DUF4735 PF15882.5 gi|119720660|ref|YP_921155.1| - 0.97 8.8 4.1 1.8 7.9 0.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4735) DUF5082 PF16888.5 gi|119720660|ref|YP_921155.1| - 1.1 9.5 18.6 1.9e+02 2.3 16.6 3.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) KxDL PF10241.9 gi|119720660|ref|YP_921155.1| - 1.2 9.4 4.6 4.7 7.6 0.7 3.0 2 1 1 3 3 2 0 Uncharacterized conserved protein LMBR1 PF04791.16 gi|119720660|ref|YP_921155.1| - 1.5 7.6 10.0 2 7.2 10.0 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Prominin PF05478.11 gi|119720660|ref|YP_921155.1| - 1.5 6.7 5.7 1.8 6.5 3.6 1.5 1 1 1 2 2 2 0 Prominin DUF4023 PF13215.6 gi|119720660|ref|YP_921155.1| - 1.6 8.8 10.8 19 5.3 0.3 4.7 4 1 1 5 5 4 0 Protein of unknown function (DUF4023) DUF4795 PF16043.5 gi|119720660|ref|YP_921155.1| - 1.6 8.3 17.4 25 4.4 9.1 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Fib_alpha PF08702.10 gi|119720660|ref|YP_921155.1| - 1.6 8.9 7.9 13 6.0 7.9 2.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Barstar PF01337.18 gi|119720660|ref|YP_921155.1| - 2 8.5 9.0 23 5.1 2.8 3.4 1 1 1 2 2 2 0 Barstar (barnase inhibitor) Atg14 PF10186.9 gi|119720660|ref|YP_921155.1| - 2.4 7.2 15.3 3.7 6.5 15.3 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 NleF_casp_inhib PF16809.5 gi|119720660|ref|YP_921155.1| - 2.8 7.9 6.6 1.6 8.6 3.7 2.2 1 1 0 1 1 1 0 NleF caspase inhibitor Phage_H_T_join PF05521.11 gi|119720660|ref|YP_921155.1| - 3.1 8.4 12.6 2 9.0 0.9 3.1 1 1 2 3 3 3 0 Phage head-tail joining protein DUF16 PF01519.16 gi|119720660|ref|YP_921155.1| - 3.3 8.2 17.4 27 5.3 8.3 3.5 2 1 1 3 3 2 0 Protein of unknown function DUF16 MobC PF05713.11 gi|119720660|ref|YP_921155.1| - 3.5 8.2 12.6 1.5e+02 3.0 0.3 5.8 1 1 6 8 8 7 0 Bacterial mobilisation protein (MobC) Ntox28 PF15605.6 gi|119720660|ref|YP_921155.1| - 3.5 7.9 11.3 8.4 6.7 2.9 3.3 1 1 3 4 4 3 0 Bacterial toxin 28 TSNAXIP1_N PF15739.5 gi|119720660|ref|YP_921155.1| - 3.9 7.9 13.4 4.9 7.6 4.0 3.1 1 1 1 2 2 2 0 Translin-associated factor X-interacting N-terminus DivIC PF04977.15 gi|119720660|ref|YP_921155.1| - 4.4 7.1 29.8 0.56 10.0 3.5 4.1 2 1 3 5 5 4 0 Septum formation initiator DUF4081 PF13312.6 gi|119720660|ref|YP_921155.1| - 4.5 7.5 12.5 23 5.2 0.3 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF4081) DUF4200 PF13863.6 gi|119720660|ref|YP_921155.1| - 4.7 7.7 30.4 2.3 8.7 24.2 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.12 gi|119720660|ref|YP_921155.1| - 5.2 7.2 25.4 4.9 7.2 20.7 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein TMF_TATA_bd PF12325.8 gi|119720660|ref|YP_921155.1| - 5.2 7.3 25.7 3.7 7.8 7.1 2.8 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding Spc24 PF08286.11 gi|119720660|ref|YP_921155.1| - 6.4 7.1 16.4 29 5.0 3.1 3.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 eIF3_N PF09440.10 gi|119720660|ref|YP_921155.1| - 6.8 7.1 10.2 50 4.3 4.5 3.1 1 1 2 3 3 3 0 eIF3 subunit 6 N terminal domain YkyA PF10368.9 gi|119720660|ref|YP_921155.1| - 7.5 6.2 19.6 11 5.6 18.6 1.7 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Img2 PF05046.14 gi|119720660|ref|YP_921155.1| - 7.7 6.9 9.0 1.3e+03 -0.2 9.0 3.1 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF1394 PF07159.12 gi|119720660|ref|YP_921155.1| - 9.7 5.3 9.2 2.6 7.2 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1394) Nup88 PF10168.9 gi|119720660|ref|YP_921155.1| - 10 3.8 15.0 17 3.1 15.0 1.4 1 0 0 1 1 1 0 Nuclear pore component DUF745 PF05335.13 gi|119720662|ref|YP_921157.1| - 0.021 14.6 0.6 0.03 14.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) AcylCoA_DH_N PF12418.8 gi|119720662|ref|YP_921157.1| - 0.29 11.2 2.1 0.68 10.0 0.3 2.1 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase N terminal Radical_SAM PF04055.21 gi|119720663|ref|YP_921158.1| - 3.3e-14 53.6 0.0 5e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1272 PF06906.11 gi|119720663|ref|YP_921158.1| - 0.054 13.6 0.0 0.091 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF790 PF05626.11 gi|119720664|ref|YP_921159.1| - 1.2e-118 396.2 0.0 1.4e-118 396.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) PASTA PF03793.19 gi|119720664|ref|YP_921159.1| - 0.0077 16.1 0.0 0.044 13.6 0.0 2.2 2 1 0 2 2 2 1 PASTA domain Sigma70_r3 PF04539.16 gi|119720664|ref|YP_921159.1| - 0.087 12.9 0.4 7.3 6.8 0.0 2.6 2 0 0 2 2 2 0 Sigma-70 region 3 ResIII PF04851.15 gi|119720665|ref|YP_921160.1| - 9.4e-24 84.3 0.0 4.7e-23 82.0 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|119720665|ref|YP_921160.1| - 1.6e-21 76.7 0.0 4.7e-21 75.1 0.0 1.7 2 0 0 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|119720665|ref|YP_921160.1| - 1.3e-18 66.6 0.1 3e-18 65.4 0.1 1.7 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|119720665|ref|YP_921160.1| - 4.8e-17 62.3 0.0 3.2e-16 59.7 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|119720665|ref|YP_921160.1| - 7.1e-10 38.9 0.0 1.2e-08 35.0 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|119720665|ref|YP_921160.1| - 5.5e-06 25.3 0.0 2.9e-05 23.0 0.0 2.1 1 1 0 1 1 1 1 SNF2 family N-terminal domain TauD PF02668.16 gi|119720665|ref|YP_921160.1| - 0.023 14.5 0.3 0.072 12.9 0.1 1.9 2 0 0 2 2 2 0 Taurine catabolism dioxygenase TauD, TfdA family AAA_22 PF13401.6 gi|119720665|ref|YP_921160.1| - 0.079 13.2 0.1 2.3 8.5 0.0 3.0 2 1 0 2 2 2 0 AAA domain DUF134 PF02001.16 gi|119720666|ref|YP_921161.1| - 4.6e-20 72.0 0.0 5.8e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4 PF04545.16 gi|119720666|ref|YP_921161.1| - 1.6e-07 30.8 0.2 2.2e-07 30.3 0.2 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|119720666|ref|YP_921161.1| - 1.9e-06 27.4 0.1 2.7e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|119720666|ref|YP_921161.1| - 2.7e-05 23.8 0.0 4.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_31 PF13560.6 gi|119720666|ref|YP_921161.1| - 0.0036 17.6 0.8 0.0055 17.0 0.8 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|119720666|ref|YP_921161.1| - 0.014 15.6 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|119720666|ref|YP_921161.1| - 0.015 15.2 0.1 0.02 14.8 0.1 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_38 PF13936.6 gi|119720666|ref|YP_921161.1| - 0.044 13.5 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|119720666|ref|YP_921161.1| - 0.049 13.7 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|119720666|ref|YP_921161.1| - 0.05 13.4 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|119720666|ref|YP_921161.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Tnp_4 PF13613.6 gi|119720666|ref|YP_921161.1| - 0.15 11.8 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF5320 PF17253.2 gi|119720667|ref|YP_921162.1| - 0.00027 21.9 2.8 0.0014 19.7 1.7 2.0 1 1 1 2 2 2 2 Family of unknown function (DUF5320) Prefoldin_2 PF01920.20 gi|119720667|ref|YP_921162.1| - 0.005 16.8 0.7 0.0062 16.5 0.7 1.1 1 0 0 1 1 1 1 Prefoldin subunit Occludin_ELL PF07303.13 gi|119720667|ref|YP_921162.1| - 0.0076 17.0 0.1 0.0096 16.6 0.1 1.1 1 0 0 1 1 1 1 Occludin homology domain DUF3450 PF11932.8 gi|119720667|ref|YP_921162.1| - 0.0091 15.3 0.2 0.011 15.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) CCDC-167 PF15188.6 gi|119720667|ref|YP_921162.1| - 0.016 15.6 1.6 0.02 15.2 1.6 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 Cut12 PF11500.8 gi|119720667|ref|YP_921162.1| - 0.016 15.2 0.7 0.021 14.8 0.7 1.2 1 0 0 1 1 1 0 Spindle pole body formation-associated protein UPF0242 PF06785.11 gi|119720667|ref|YP_921162.1| - 0.029 14.5 0.2 0.035 14.2 0.2 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus APG6_N PF17675.1 gi|119720667|ref|YP_921162.1| - 0.038 14.5 0.7 0.048 14.2 0.7 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF4618 PF15397.6 gi|119720667|ref|YP_921162.1| - 0.076 12.4 0.4 0.091 12.2 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) DUF724 PF05266.14 gi|119720667|ref|YP_921162.1| - 0.081 12.7 0.1 0.098 12.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF1319 PF07028.11 gi|119720667|ref|YP_921162.1| - 0.11 12.8 0.2 0.13 12.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1319) TPR_MLP1_2 PF07926.12 gi|119720667|ref|YP_921162.1| - 0.16 12.0 2.8 0.19 11.8 2.8 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.10 gi|119720667|ref|YP_921162.1| - 0.22 11.7 0.0 0.26 11.5 0.0 1.0 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family HR1 PF02185.16 gi|119720667|ref|YP_921162.1| - 0.38 10.9 2.6 3.1 8.0 2.6 2.0 1 1 0 1 1 1 0 Hr1 repeat Gp_dh_C PF02800.20 gi|119720668|ref|YP_921163.1| - 1.1e-08 34.8 0.0 1.5e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|119720668|ref|YP_921163.1| - 9e-05 22.6 0.2 0.0003 20.9 0.2 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|119720668|ref|YP_921163.1| - 0.011 16.1 0.0 0.028 14.8 0.0 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|119720669|ref|YP_921164.1| - 4.4e-37 127.9 0.0 5.9e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119720669|ref|YP_921164.1| - 4.9e-15 55.8 0.3 3.1e-07 30.9 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119720669|ref|YP_921164.1| - 2e-09 37.2 0.0 2.2e-05 23.9 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|119720669|ref|YP_921164.1| - 4.5e-09 36.4 0.0 1.5e-07 31.5 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|119720669|ref|YP_921164.1| - 1.2e-06 27.9 0.1 0.011 14.8 0.0 2.9 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|119720669|ref|YP_921164.1| - 5.7e-05 22.5 0.4 0.00025 20.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|119720669|ref|YP_921164.1| - 7.6e-05 21.6 0.1 0.00039 19.2 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|119720669|ref|YP_921164.1| - 0.00047 19.8 0.5 1.3 8.5 0.0 3.3 3 1 0 3 3 3 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|119720669|ref|YP_921164.1| - 0.00049 19.5 0.0 0.12 11.7 0.0 2.5 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|119720669|ref|YP_921164.1| - 0.00051 19.4 0.3 0.0033 16.8 0.0 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|119720669|ref|YP_921164.1| - 0.0019 17.6 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|119720669|ref|YP_921164.1| - 0.0088 15.9 0.2 1.1 9.2 0.0 2.4 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YjeF_N PF03853.15 gi|119720669|ref|YP_921164.1| - 0.017 15.0 0.0 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 YjeF-related protein N-terminus Thi4 PF01946.17 gi|119720669|ref|YP_921164.1| - 0.023 14.0 0.0 0.058 12.6 0.0 1.6 1 0 0 1 1 1 0 Thi4 family Amino_oxidase PF01593.24 gi|119720669|ref|YP_921164.1| - 0.041 13.2 0.0 5.4 6.2 0.0 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|119720669|ref|YP_921164.1| - 0.082 12.0 0.1 0.65 9.0 0.0 2.4 3 0 0 3 3 3 0 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|119720669|ref|YP_921164.1| - 0.086 12.0 0.2 5.1 6.1 0.0 3.1 5 0 0 5 5 5 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|119720669|ref|YP_921164.1| - 0.093 12.7 0.9 0.7 9.9 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Polysacc_synt_3 PF13440.6 gi|119720670|ref|YP_921165.1| - 3.2e-05 23.3 9.5 3.2e-05 23.3 9.5 3.1 2 2 0 2 2 2 1 Polysaccharide biosynthesis protein NUDIX PF00293.28 gi|119720671|ref|YP_921166.1| - 4.1e-15 56.0 1.1 5.2e-15 55.7 1.1 1.1 1 0 0 1 1 1 1 NUDIX domain VAPB_antitox PF02697.14 gi|119720672|ref|YP_921167.1| - 2e-05 25.3 0.0 2.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Putative antitoxin adh_short PF00106.25 gi|119720673|ref|YP_921168.1| - 2.7e-39 134.6 0.0 3.4e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|119720673|ref|YP_921168.1| - 8.2e-27 94.3 0.0 9.9e-27 94.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|119720673|ref|YP_921168.1| - 0.001 19.1 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|119720673|ref|YP_921168.1| - 0.0028 17.1 0.0 0.012 15.1 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|119720673|ref|YP_921168.1| - 0.006 16.5 0.0 0.016 15.1 0.0 1.6 2 1 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|119720673|ref|YP_921168.1| - 0.092 11.8 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain DUF2505 PF10698.9 gi|119720674|ref|YP_921169.1| - 0.6 10.2 5.2 8.7 6.4 0.0 3.9 3 1 1 4 4 4 0 Protein of unknown function (DUF2505) SPOUT_MTase_2 PF14419.6 gi|119720675|ref|YP_921170.1| - 2.4e-72 241.9 0.4 4e-72 241.2 0.4 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|119720675|ref|YP_921170.1| - 2.5e-26 92.5 0.3 5.2e-26 91.5 0.3 1.5 1 0 0 1 1 1 1 THUMP domain DUF2148 PF09918.9 gi|119720675|ref|YP_921170.1| - 0.015 15.4 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) DUF812 PF05667.11 gi|119720677|ref|YP_921172.1| - 0.0016 17.5 1.4 0.0074 15.2 1.6 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF812) DUF3107 PF11305.8 gi|119720677|ref|YP_921172.1| - 0.0091 16.2 0.1 0.022 15.0 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3107) FAP206 PF12018.8 gi|119720677|ref|YP_921172.1| - 0.025 14.1 0.6 0.087 12.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function HsbA PF12296.8 gi|119720677|ref|YP_921172.1| - 0.025 15.0 4.3 0.86 10.0 2.0 3.0 2 1 1 3 3 3 0 Hydrophobic surface binding protein A ADIP PF11559.8 gi|119720677|ref|YP_921172.1| - 0.072 13.2 1.0 8.5 6.4 0.1 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding BLOC1_2 PF10046.9 gi|119720677|ref|YP_921172.1| - 0.21 11.9 4.5 5.5 7.4 0.1 3.5 2 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Exonuc_VII_L PF02601.15 gi|119720677|ref|YP_921172.1| - 0.94 9.0 3.7 2.9 7.4 3.7 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit MscS_porin PF12795.7 gi|119720677|ref|YP_921172.1| - 5 6.6 9.8 1.7 8.2 2.7 2.2 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain ABC_tran PF00005.27 gi|119720678|ref|YP_921173.1| - 2.9e-32 112.0 0.0 4.3e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720678|ref|YP_921173.1| - 1.6e-08 34.8 0.6 0.00074 19.4 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720678|ref|YP_921173.1| - 1.8e-06 27.6 0.3 0.0012 18.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119720678|ref|YP_921173.1| - 0.00032 20.4 0.2 0.00068 19.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|119720678|ref|YP_921173.1| - 0.00073 18.3 0.5 0.029 13.0 0.0 2.7 1 1 2 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|119720678|ref|YP_921173.1| - 0.0019 17.8 0.0 0.025 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|119720678|ref|YP_921173.1| - 0.0036 16.4 0.3 0.12 11.4 0.1 2.1 1 1 0 2 2 2 1 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|119720678|ref|YP_921173.1| - 0.0057 16.4 0.1 1.8 8.3 0.0 2.5 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119720678|ref|YP_921173.1| - 0.011 16.0 0.4 0.22 11.8 0.1 2.6 2 1 1 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|119720678|ref|YP_921173.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DLIC PF05783.11 gi|119720678|ref|YP_921173.1| - 0.013 14.4 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_16 PF13191.6 gi|119720678|ref|YP_921173.1| - 0.014 15.8 0.2 0.027 14.9 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|119720678|ref|YP_921173.1| - 0.018 15.5 0.4 0.093 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|119720678|ref|YP_921173.1| - 0.023 14.4 0.1 0.09 12.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|119720678|ref|YP_921173.1| - 0.045 14.0 0.1 0.43 10.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|119720678|ref|YP_921173.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|119720678|ref|YP_921173.1| - 0.2 11.4 0.0 0.54 9.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain FtsX PF02687.21 gi|119720679|ref|YP_921174.1| - 7e-16 58.5 3.1 7e-16 58.5 3.1 3.0 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|119720679|ref|YP_921174.1| - 1.8e-15 57.8 5.2 1.8e-15 57.8 5.2 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain GreA_GreB PF01272.19 gi|119720679|ref|YP_921174.1| - 0.091 12.7 0.0 0.29 11.1 0.0 1.9 1 0 0 1 1 1 0 Transcription elongation factor, GreA/GreB, C-term Methyltransf_11 PF08241.12 gi|119720680|ref|YP_921175.1| - 1.3e-13 51.4 0.0 2e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119720680|ref|YP_921175.1| - 1.1e-08 35.7 0.0 1.9e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119720680|ref|YP_921175.1| - 1.1e-05 25.2 0.1 6.7e-05 22.7 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|119720680|ref|YP_921175.1| - 1.7e-05 24.5 0.0 2.4e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|119720680|ref|YP_921175.1| - 0.042 14.6 0.0 0.069 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Phosphorylase PF00343.20 gi|119720681|ref|YP_921176.1| - 4e-15 55.2 0.1 3.3e-13 48.9 0.0 2.8 1 1 1 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|119720681|ref|YP_921176.1| - 2.4e-07 30.4 0.0 4.7e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Zip PF02535.22 gi|119720682|ref|YP_921177.1| - 1.7e-19 70.3 22.6 3.1e-17 62.8 8.5 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.20 gi|119720682|ref|YP_921177.1| - 0.0069 15.9 0.6 0.2 11.2 0.0 2.7 1 1 1 2 2 2 1 E1-E2 ATPase Nre_N PF04894.12 gi|119720684|ref|YP_921179.1| - 2.2e-95 319.6 0.0 2.6e-95 319.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|119720684|ref|YP_921179.1| - 1.4e-35 121.5 0.1 2.4e-35 120.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Radical_SAM PF04055.21 gi|119720685|ref|YP_921180.1| - 6.5e-15 55.9 0.0 9.2e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF5131 PF07505.11 gi|119720685|ref|YP_921180.1| - 0.0038 16.7 0.0 0.0055 16.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF5131) DUF1848 PF08902.11 gi|119720685|ref|YP_921180.1| - 0.42 10.3 5.4 25 4.5 7.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Lsm_C PF14894.6 gi|119720685|ref|YP_921180.1| - 7.4 6.4 7.9 0.77 9.6 0.3 2.6 3 0 0 3 3 3 0 Lsm C-terminal DUF1180 PF06679.12 gi|119720686|ref|YP_921181.1| - 0.045 14.2 0.3 0.063 13.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) SWIM PF04434.17 gi|119720687|ref|YP_921182.1| - 0.053 13.2 0.1 0.086 12.5 0.1 1.3 1 0 0 1 1 1 0 SWIM zinc finger HrpE PF06188.12 gi|119720687|ref|YP_921182.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Acetyltransf_1 PF00583.25 gi|119720688|ref|YP_921183.1| - 0.00016 21.9 0.0 0.00027 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.7 gi|119720688|ref|YP_921183.1| - 0.00049 20.3 0.1 0.00098 19.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GDPD PF03009.17 gi|119720689|ref|YP_921184.1| - 4.8e-29 101.9 0.0 2.6e-27 96.2 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|119720689|ref|YP_921184.1| - 0.084 13.4 0.1 22 5.7 0.1 2.5 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Lon_C PF05362.13 gi|119720690|ref|YP_921185.1| - 2.9e-14 53.1 0.2 5.8e-14 52.1 0.2 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|119720690|ref|YP_921185.1| - 0.00031 20.6 0.0 0.0007 19.4 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase PTS_IIA PF02255.16 gi|119720691|ref|YP_921186.1| - 7.8e-05 22.6 7.3 0.1 12.7 0.6 3.1 3 0 0 3 3 3 2 PTS system, Lactose/Cellobiose specific IIA subunit DUF1771 PF08590.10 gi|119720691|ref|YP_921186.1| - 0.0039 17.5 5.0 0.13 12.6 0.1 3.7 3 1 1 4 4 4 1 Domain of unknown function (DUF1771) YfdX PF10938.8 gi|119720691|ref|YP_921186.1| - 0.015 15.2 10.3 0.55 10.2 0.3 3.1 2 1 0 2 2 2 0 YfdX protein DBINO PF13892.6 gi|119720691|ref|YP_921186.1| - 0.13 12.6 11.6 0.35 11.2 0.2 3.2 4 0 0 4 4 4 0 DNA-binding domain Cytochrom_B562 PF07361.11 gi|119720691|ref|YP_921186.1| - 0.15 12.8 7.0 15 6.3 0.1 4.3 4 0 0 4 4 4 0 Cytochrome b562 DUF4363 PF14276.6 gi|119720691|ref|YP_921186.1| - 0.23 11.6 6.6 3.4 7.8 0.4 4.3 4 1 0 4 4 4 0 Domain of unknown function (DUF4363) FliS PF02561.14 gi|119720691|ref|YP_921186.1| - 0.33 11.2 7.5 6.4 7.1 0.4 3.3 3 0 0 3 3 3 0 Flagellar protein FliS DUF4735 PF15882.5 gi|119720691|ref|YP_921186.1| - 0.73 9.2 6.9 0.14 11.6 0.8 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4735) DASH_Duo1 PF08651.10 gi|119720691|ref|YP_921186.1| - 1.1 9.1 6.2 0.46 10.3 1.3 2.8 3 0 0 3 3 3 0 DASH complex subunit Duo1 TPR_22 PF18833.1 gi|119720691|ref|YP_921186.1| - 1.3 9.3 6.1 0.95 9.6 0.2 3.1 3 1 1 4 4 4 0 Tetratricopeptide repeat Rogdi_lz PF10259.9 gi|119720691|ref|YP_921186.1| - 2.1 7.7 11.3 11 5.4 9.7 2.5 2 1 0 2 2 2 0 Rogdi leucine zipper containing protein Fer4_5 PF12801.7 gi|119720692|ref|YP_921187.1| - 7.2e-14 51.5 9.6 2.3e-10 40.3 3.5 4.7 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.27 gi|119720692|ref|YP_921187.1| - 1.2e-13 50.3 20.6 7e-10 38.3 4.2 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119720692|ref|YP_921187.1| - 1.6e-08 35.0 16.9 2.2e-06 28.1 4.4 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119720692|ref|YP_921187.1| - 2e-08 34.3 10.9 2e-08 34.3 10.9 2.6 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119720692|ref|YP_921187.1| - 5.9e-08 32.5 21.8 2.6e-07 30.4 4.0 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119720692|ref|YP_921187.1| - 2.7e-07 30.6 9.4 2.7e-07 30.6 9.4 3.3 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119720692|ref|YP_921187.1| - 7.1e-07 30.1 14.7 0.00015 22.6 4.9 4.0 3 2 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|119720692|ref|YP_921187.1| - 1.4e-06 28.3 13.1 1.4e-06 28.3 13.1 2.9 3 2 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119720692|ref|YP_921187.1| - 8.6e-06 25.5 3.0 8.6e-06 25.5 3.0 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|119720692|ref|YP_921187.1| - 0.00035 20.7 9.1 0.00035 20.7 9.1 2.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119720692|ref|YP_921187.1| - 0.0018 18.6 4.1 0.0018 18.6 4.1 4.1 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119720692|ref|YP_921187.1| - 0.0048 17.8 6.0 0.0048 17.8 6.0 4.7 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|119720692|ref|YP_921187.1| - 0.074 13.6 3.7 0.074 13.6 3.7 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|119720692|ref|YP_921187.1| - 0.13 13.0 1.2 0.13 13.0 1.2 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|119720692|ref|YP_921187.1| - 0.54 10.8 21.8 11 6.6 14.4 3.7 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119720692|ref|YP_921187.1| - 5.4 7.9 14.1 1.1e+02 3.7 14.1 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119720693|ref|YP_921188.1| - 9.2e-21 72.8 37.0 3.2e-08 33.1 3.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119720693|ref|YP_921188.1| - 1.1e-20 73.9 42.5 7.6e-12 45.6 10.8 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119720693|ref|YP_921188.1| - 8.7e-19 66.7 32.4 7.5e-08 32.1 2.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119720693|ref|YP_921188.1| - 2.2e-15 56.5 51.3 5.2e-09 36.1 10.9 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119720693|ref|YP_921188.1| - 2.1e-14 52.6 31.1 3.1e-05 23.8 2.5 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119720693|ref|YP_921188.1| - 2.9e-14 52.9 28.4 8.6e-10 38.6 11.6 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119720693|ref|YP_921188.1| - 2.7e-13 50.6 24.4 0.00031 21.6 1.8 4.3 3 1 2 5 5 5 5 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119720693|ref|YP_921188.1| - 1.7e-12 47.2 24.6 5.1e-11 42.5 7.8 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119720693|ref|YP_921188.1| - 6.6e-12 45.7 18.9 0.00012 22.5 11.6 4.0 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119720693|ref|YP_921188.1| - 1.6e-08 34.4 35.1 0.0037 17.6 4.6 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119720693|ref|YP_921188.1| - 1.6e-08 35.0 21.4 0.013 16.0 0.2 4.1 2 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119720693|ref|YP_921188.1| - 2.5e-08 34.3 41.5 0.011 16.7 7.0 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119720693|ref|YP_921188.1| - 7.4e-06 26.6 23.6 0.0067 17.1 0.8 4.3 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|119720693|ref|YP_921188.1| - 4.8e-05 24.1 24.4 0.1 13.5 1.5 4.0 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119720693|ref|YP_921188.1| - 0.0041 17.6 31.2 0.025 15.1 2.8 4.2 4 0 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|119720693|ref|YP_921188.1| - 0.0056 16.9 29.2 0.5 10.6 2.0 3.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain DUF678 PF05077.12 gi|119720693|ref|YP_921188.1| - 0.0089 16.1 10.1 0.039 14.1 5.9 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF678) TauE PF01925.19 gi|119720693|ref|YP_921188.1| - 0.11 12.1 0.0 0.96 9.0 0.0 2.0 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE GPDPase_memb PF10110.9 gi|119720693|ref|YP_921188.1| - 0.25 10.1 0.0 0.34 9.6 0.0 1.1 1 0 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase ETF_QO PF05187.13 gi|119720693|ref|YP_921188.1| - 4.1 7.6 6.9 12 6.1 0.2 2.6 2 1 1 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Pur_DNA_glyco PF02245.16 gi|119720694|ref|YP_921189.1| - 2.1e-33 115.2 0.0 2.6e-33 114.9 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) ATP-cone PF03477.16 gi|119720695|ref|YP_921190.1| - 1e-10 42.0 0.4 1.2e-10 41.9 0.4 1.1 1 0 0 1 1 1 1 ATP cone domain KNOX1 PF03790.13 gi|119720695|ref|YP_921190.1| - 0.0074 16.0 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 KNOX1 domain PBP_like_2 PF12849.7 gi|119720696|ref|YP_921191.1| - 5.7e-25 88.5 0.0 7.1e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|119720696|ref|YP_921191.1| - 1.7e-12 47.6 0.0 2.6e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|119720696|ref|YP_921191.1| - 1.4e-05 24.6 0.1 2.9e-05 23.5 0.0 1.5 2 0 0 2 2 2 1 LysR substrate binding domain SBP_bac_1 PF01547.25 gi|119720696|ref|YP_921191.1| - 0.00035 20.6 2.6 0.0076 16.2 2.1 2.6 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|119720696|ref|YP_921191.1| - 0.012 14.7 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 PBP superfamily domain DUF4148 PF13663.6 gi|119720696|ref|YP_921191.1| - 0.033 14.4 1.5 0.69 10.1 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) BPD_transp_1 PF00528.22 gi|119720697|ref|YP_921192.1| - 6.3e-11 42.3 13.0 9e-11 41.8 13.0 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Phage_holin_Dp1 PF16938.5 gi|119720697|ref|YP_921192.1| - 0.043 14.0 1.4 0.29 11.4 0.2 2.7 2 0 0 2 2 2 0 Putative phage holin Dp-1 ABC_tran PF00005.27 gi|119720698|ref|YP_921193.1| - 1.7e-27 96.6 0.0 2.1e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119720698|ref|YP_921193.1| - 2.5e-18 67.0 0.1 1.8e-10 41.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119720698|ref|YP_921193.1| - 3.5e-10 39.7 0.0 6.2e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119720698|ref|YP_921193.1| - 7.5e-06 26.6 0.0 1.1e-05 26.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119720698|ref|YP_921193.1| - 2.6e-05 24.5 0.1 0.00019 21.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119720698|ref|YP_921193.1| - 3.3e-05 24.3 0.0 5.5e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119720698|ref|YP_921193.1| - 5.6e-05 22.8 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|119720698|ref|YP_921193.1| - 0.00025 21.4 0.1 0.19 12.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|119720698|ref|YP_921193.1| - 0.00025 20.9 0.0 0.00058 19.7 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.6 gi|119720698|ref|YP_921193.1| - 0.0013 17.5 0.0 0.076 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|119720698|ref|YP_921193.1| - 0.0024 17.6 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|119720698|ref|YP_921193.1| - 0.0043 17.3 0.1 0.096 12.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|119720698|ref|YP_921193.1| - 0.0054 16.7 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|119720698|ref|YP_921193.1| - 0.0071 16.0 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|119720698|ref|YP_921193.1| - 0.0084 15.7 0.6 0.037 13.6 0.4 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|119720698|ref|YP_921193.1| - 0.011 15.9 0.0 0.034 14.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119720698|ref|YP_921193.1| - 0.011 15.6 0.1 0.034 14.1 0.0 1.8 2 0 0 2 2 2 0 NACHT domain WES_acyltransf PF03007.16 gi|119720698|ref|YP_921193.1| - 0.016 15.0 0.1 0.024 14.4 0.1 1.2 1 0 0 1 1 1 0 Wax ester synthase-like Acyl-CoA acyltransferase domain ABC_ATPase PF09818.9 gi|119720698|ref|YP_921193.1| - 0.018 13.9 0.8 0.35 9.6 0.2 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|119720698|ref|YP_921193.1| - 0.02 14.6 0.0 0.066 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|119720698|ref|YP_921193.1| - 0.024 12.2 0.1 0.032 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Mg_chelatase PF01078.21 gi|119720698|ref|YP_921193.1| - 0.024 14.0 0.0 0.11 11.9 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|119720698|ref|YP_921193.1| - 0.029 14.4 0.0 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|119720698|ref|YP_921193.1| - 0.037 14.4 0.0 0.37 11.2 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|119720698|ref|YP_921193.1| - 0.043 13.7 0.1 0.093 12.6 0.0 1.5 2 0 0 2 2 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|119720698|ref|YP_921193.1| - 0.06 12.9 0.1 0.094 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|119720698|ref|YP_921193.1| - 0.072 13.0 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|119720698|ref|YP_921193.1| - 0.073 12.1 0.1 0.2 10.7 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Semialdhyde_dhC PF02774.18 gi|119720698|ref|YP_921193.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain IstB_IS21 PF01695.17 gi|119720698|ref|YP_921193.1| - 0.17 11.6 0.1 5.4 6.7 0.0 2.7 2 1 1 3 3 3 0 IstB-like ATP binding protein Adeno_IVa2 PF02456.15 gi|119720698|ref|YP_921193.1| - 0.19 10.5 0.1 0.34 9.7 0.1 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein SRP54 PF00448.22 gi|119720698|ref|YP_921193.1| - 0.23 11.0 0.0 0.85 9.2 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PBP_like PF12727.7 gi|119720699|ref|YP_921194.1| - 3e-51 173.3 0.0 4.2e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|119720699|ref|YP_921194.1| - 0.00049 19.9 0.0 0.00076 19.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein HTH_1 PF00126.27 gi|119720699|ref|YP_921194.1| - 0.011 15.7 4.1 0.044 13.7 0.5 3.1 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family Phosphonate-bd PF12974.7 gi|119720699|ref|YP_921194.1| - 0.022 14.3 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein QueT PF06177.11 gi|119720700|ref|YP_921195.1| - 3.5e-25 89.0 17.5 3.9e-25 88.8 17.5 1.0 1 0 0 1 1 1 1 QueT transporter DUF3007 PF11460.8 gi|119720700|ref|YP_921195.1| - 0.037 14.3 1.2 0.086 13.1 1.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) MscL PF01741.18 gi|119720700|ref|YP_921195.1| - 0.14 12.4 0.2 0.14 12.4 0.2 2.2 2 1 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL DUF4013 PF13197.6 gi|119720701|ref|YP_921196.1| - 3e-18 66.2 27.4 3.9e-18 65.9 27.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) Lon_2 PF13337.6 gi|119720703|ref|YP_921198.1| - 1.1e-141 472.5 0.0 1.3e-141 472.3 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease RuvB_N PF05496.12 gi|119720703|ref|YP_921198.1| - 0.047 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF1641 PF07849.11 gi|119720704|ref|YP_921199.1| - 7.2e-18 64.2 0.9 7.2e-18 64.2 0.9 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|119720705|ref|YP_921200.1| - 4.2e-19 68.9 0.0 6.3e-18 65.0 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119720705|ref|YP_921200.1| - 0.00011 22.6 0.5 0.066 13.8 0.0 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|119720705|ref|YP_921200.1| - 0.0035 17.3 0.1 0.3 11.1 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|119720705|ref|YP_921200.1| - 0.0054 16.0 0.0 0.009 15.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|119720705|ref|YP_921200.1| - 0.0069 16.0 0.4 2.5 7.6 0.5 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|119720705|ref|YP_921200.1| - 0.0098 14.8 0.9 0.19 10.5 0.2 2.1 1 1 1 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.14 gi|119720705|ref|YP_921200.1| - 0.06 12.0 0.0 13 4.4 0.0 2.7 3 0 0 3 3 3 0 HI0933-like protein TrkA_N PF02254.18 gi|119720705|ref|YP_921200.1| - 0.074 13.3 0.2 0.81 10.0 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain Lycopene_cycl PF05834.12 gi|119720705|ref|YP_921200.1| - 0.16 11.0 0.2 1.8 7.5 0.1 2.1 1 1 1 2 2 2 0 Lycopene cyclase protein TusA PF01206.17 gi|119720706|ref|YP_921201.1| - 2e-17 62.8 0.0 2.2e-17 62.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA HrpE PF06188.12 gi|119720706|ref|YP_921201.1| - 0.14 12.0 0.0 0.15 11.9 0.0 1.0 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DrsE_2 PF13686.6 gi|119720707|ref|YP_921202.1| - 1e-11 45.0 0.6 1.9e-05 24.6 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|119720707|ref|YP_921202.1| - 2.5e-06 27.9 0.0 6.4e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF2482 PF10655.9 gi|119720707|ref|YP_921202.1| - 0.0046 17.4 0.0 0.0061 17.0 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein of unknown function (DUF2482) Creatininase PF02633.14 gi|119720708|ref|YP_921203.1| - 2.2e-52 177.9 0.0 2.5e-52 177.8 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.27 gi|119720709|ref|YP_921204.1| - 2.3e-36 125.3 0.0 8.6e-36 123.5 0.0 1.9 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 gi|119720709|ref|YP_921204.1| - 4.2e-09 36.5 0.3 4e-08 33.3 0.1 2.6 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|119720709|ref|YP_921204.1| - 5.1e-08 33.1 0.1 0.00042 20.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|119720709|ref|YP_921204.1| - 0.00047 20.1 0.0 0.00078 19.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain TOBE PF03459.17 gi|119720709|ref|YP_921204.1| - 0.00071 19.8 0.4 0.004 17.4 0.0 2.3 2 0 0 2 2 2 1 TOBE domain RNA_helicase PF00910.22 gi|119720709|ref|YP_921204.1| - 0.0019 18.5 0.0 0.0037 17.6 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_23 PF13476.6 gi|119720709|ref|YP_921204.1| - 0.0051 17.3 1.3 0.011 16.3 1.3 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119720709|ref|YP_921204.1| - 0.017 14.6 0.3 0.32 10.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|119720709|ref|YP_921204.1| - 0.018 15.5 0.0 0.2 12.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119720709|ref|YP_921204.1| - 0.032 14.5 1.9 0.32 11.2 1.9 2.1 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|119720709|ref|YP_921204.1| - 0.053 12.9 0.2 0.72 9.2 0.2 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 gi|119720709|ref|YP_921204.1| - 0.053 13.9 0.1 0.089 13.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|119720709|ref|YP_921204.1| - 0.12 12.6 0.4 0.4 10.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119720709|ref|YP_921204.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|119720709|ref|YP_921204.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|119720709|ref|YP_921204.1| - 0.25 10.5 0.0 0.76 8.9 0.0 1.7 1 1 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.22 gi|119720710|ref|YP_921205.1| - 2.3e-22 79.6 47.2 9.6e-17 61.3 18.7 5.1 2 1 3 5 5 5 2 Binding-protein-dependent transport system inner membrane component Sdh_cyt PF01127.22 gi|119720710|ref|YP_921205.1| - 0.03 14.3 0.5 0.03 14.3 0.5 5.4 4 2 1 5 5 5 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sterol_MT_C PF08498.10 gi|119720710|ref|YP_921205.1| - 0.066 13.5 0.0 0.2 12.0 0.0 1.8 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal SBP_bac_8 PF13416.6 gi|119720711|ref|YP_921206.1| - 4.7e-20 72.5 0.7 8.4e-20 71.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|119720711|ref|YP_921206.1| - 1.7e-16 60.4 0.1 3e-16 59.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119720711|ref|YP_921206.1| - 7.3e-15 55.7 1.0 7.3e-15 55.7 1.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119720711|ref|YP_921206.1| - 2.4e-08 34.0 0.1 8.5e-08 32.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF2749 PF10907.8 gi|119720711|ref|YP_921206.1| - 0.1 12.8 0.2 0.26 11.5 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) Totivirus_coat PF05518.11 gi|119720711|ref|YP_921206.1| - 0.76 7.8 3.5 1.1 7.2 3.5 1.1 1 0 0 1 1 1 0 Totivirus coat protein ABC_transp_aux PF09822.9 gi|119720712|ref|YP_921207.1| - 5.9e-05 22.7 0.0 9.9e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system LPP PF04728.13 gi|119720712|ref|YP_921207.1| - 0.0013 19.1 3.9 0.053 13.9 2.2 2.3 1 1 1 2 2 2 2 Lipoprotein leucine-zipper DUF1664 PF07889.12 gi|119720712|ref|YP_921207.1| - 0.0039 17.2 0.3 0.0075 16.3 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|119720712|ref|YP_921207.1| - 0.0074 16.3 3.0 0.015 15.4 3.0 1.4 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.11 gi|119720712|ref|YP_921207.1| - 0.029 14.8 1.0 5.7 7.4 0.1 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4350 PF14258.6 gi|119720712|ref|YP_921207.1| - 0.034 14.6 0.0 0.11 12.9 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) HsbA PF12296.8 gi|119720712|ref|YP_921207.1| - 0.088 13.2 4.1 0.34 11.3 4.0 1.8 1 1 0 1 1 1 0 Hydrophobic surface binding protein A KxDL PF10241.9 gi|119720712|ref|YP_921207.1| - 0.092 13.0 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein DUF16 PF01519.16 gi|119720712|ref|YP_921207.1| - 0.14 12.7 0.1 0.29 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 SlyX PF04102.12 gi|119720712|ref|YP_921207.1| - 0.14 12.8 0.1 0.31 11.7 0.0 1.6 2 0 0 2 2 2 0 SlyX Metallophos PF00149.28 gi|119720713|ref|YP_921208.1| - 1.2e-16 61.8 1.0 2.7e-16 60.7 1.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|119720713|ref|YP_921208.1| - 1.5e-05 25.2 0.0 4.8e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CEND1 PF15677.5 gi|119720713|ref|YP_921208.1| - 0.052 14.1 0.2 0.097 13.2 0.2 1.5 1 0 0 1 1 1 0 Cell cycle exit and neuronal differentiation protein 1 Pex14_N PF04695.13 gi|119720713|ref|YP_921208.1| - 1.7 9.3 11.6 0.85 10.3 9.0 2.0 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Helicase_C_2 PF13307.6 gi|119720715|ref|YP_921210.1| - 1.1e-29 103.8 0.0 2e-29 103.0 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|119720715|ref|YP_921210.1| - 8.1e-22 77.7 0.0 1.3e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 HBB PF06777.11 gi|119720715|ref|YP_921210.1| - 4.1e-11 42.9 0.0 8e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 Helical and beta-bridge domain DEAD PF00270.29 gi|119720715|ref|YP_921210.1| - 7.1e-05 22.6 0.0 0.011 15.5 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|119720715|ref|YP_921210.1| - 0.00018 21.6 0.0 0.016 15.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF3638 PF12340.8 gi|119720715|ref|YP_921210.1| - 0.2 11.0 0.0 0.38 10.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3638) Sua5_yciO_yrdC PF01300.18 gi|119720716|ref|YP_921211.1| - 2.5e-59 199.8 0.0 3.5e-59 199.3 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|119720716|ref|YP_921211.1| - 3.4e-29 102.1 0.0 5.5e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Pribosyltran PF00156.27 gi|119720717|ref|YP_921212.1| - 3.1e-23 82.0 0.1 6.1e-23 81.1 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119720717|ref|YP_921212.1| - 0.047 13.1 0.3 0.067 12.6 0.3 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase CBS PF00571.28 gi|119720718|ref|YP_921213.1| - 2.6e-23 82.2 4.1 3e-06 27.6 0.1 4.4 4 0 0 4 4 4 4 CBS domain IF3_N PF05198.16 gi|119720718|ref|YP_921213.1| - 0.0044 17.2 0.4 0.84 9.9 0.0 3.5 4 0 0 4 4 4 1 Translation initiation factor IF-3, N-terminal domain Fer4 PF00037.27 gi|119720719|ref|YP_921214.1| - 2.4e-18 65.1 43.7 1.1e-08 34.5 4.0 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119720719|ref|YP_921214.1| - 1.6e-16 59.6 37.3 3.4e-06 26.9 3.6 4.5 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119720719|ref|YP_921214.1| - 7.4e-15 55.3 30.8 6.9e-06 26.6 0.6 3.8 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119720719|ref|YP_921214.1| - 2.9e-14 52.2 34.9 9e-05 22.3 3.7 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119720719|ref|YP_921214.1| - 2.9e-12 46.5 51.6 2.9e-07 30.5 11.7 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119720719|ref|YP_921214.1| - 1.8e-11 44.0 33.3 1.6e-05 25.0 13.8 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119720719|ref|YP_921214.1| - 2.8e-09 37.8 27.4 0.0038 18.1 1.5 4.2 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_11 PF13247.6 gi|119720719|ref|YP_921214.1| - 4.5e-09 36.3 12.2 4.5e-09 36.3 12.2 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119720719|ref|YP_921214.1| - 4.6e-08 33.0 37.6 0.0011 19.4 2.6 4.6 3 2 1 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119720719|ref|YP_921214.1| - 2.5e-07 30.7 31.6 0.0002 21.4 12.1 3.2 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119720719|ref|YP_921214.1| - 1e-06 29.1 29.2 0.0092 16.4 1.2 3.9 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119720719|ref|YP_921214.1| - 4e-05 24.2 48.4 0.033 15.1 6.3 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119720719|ref|YP_921214.1| - 5e-05 23.8 31.6 0.025 15.1 1.9 4.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119720719|ref|YP_921214.1| - 0.00046 20.9 22.3 0.074 13.8 6.6 3.8 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|119720719|ref|YP_921214.1| - 0.0084 16.3 24.3 0.5 10.6 1.7 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119720719|ref|YP_921214.1| - 0.0088 16.9 27.6 0.13 13.1 2.9 4.1 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119720719|ref|YP_921214.1| - 0.043 14.4 0.3 0.043 14.4 0.3 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I AFOR_N PF02730.15 gi|119720720|ref|YP_921215.1| - 1.6e-64 217.4 0.1 2.5e-64 216.8 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|119720720|ref|YP_921215.1| - 1.2e-62 212.2 0.0 1.6e-62 211.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SfsA PF03749.13 gi|119720721|ref|YP_921216.1| - 9.2e-34 116.3 0.0 1.4e-33 115.7 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|119720721|ref|YP_921216.1| - 3.5e-17 62.3 0.3 6.7e-17 61.4 0.3 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain PDDEXK_10 PF07788.11 gi|119720721|ref|YP_921216.1| - 0.052 13.5 0.0 2.4 8.1 0.0 2.3 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Meth_synt_2 PF01717.18 gi|119720722|ref|YP_921217.1| - 1.4e-06 27.9 0.0 2.8e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 Cobalamin-independent synthase, Catalytic domain RdRP_3 PF00998.23 gi|119720722|ref|YP_921217.1| - 0.099 11.3 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Viral RNA dependent RNA polymerase TrmB PF01978.19 gi|119720722|ref|YP_921217.1| - 0.13 12.1 0.5 74 3.3 0.0 3.5 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB MobB PF03205.14 gi|119720723|ref|YP_921218.1| - 3.1e-19 69.2 0.0 4.4e-19 68.7 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|119720723|ref|YP_921218.1| - 1e-10 41.1 2.3 1.7e-10 40.4 2.3 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster CbiA PF01656.23 gi|119720723|ref|YP_921218.1| - 0.0013 18.8 0.0 0.0018 18.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|119720723|ref|YP_921218.1| - 0.013 14.5 0.5 0.021 13.8 0.5 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|119720723|ref|YP_921218.1| - 0.015 14.9 0.1 0.021 14.4 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|119720723|ref|YP_921218.1| - 0.016 15.3 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119720723|ref|YP_921218.1| - 0.032 14.6 0.0 0.053 13.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|119720723|ref|YP_921218.1| - 0.038 14.5 0.0 0.048 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|119720723|ref|YP_921218.1| - 0.041 13.8 0.1 0.083 12.8 0.1 1.5 1 0 0 1 1 1 0 NTPase NACHT PF05729.12 gi|119720723|ref|YP_921218.1| - 0.052 13.5 0.0 0.19 11.6 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|119720723|ref|YP_921218.1| - 0.059 13.8 0.1 0.11 12.9 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|119720723|ref|YP_921218.1| - 0.068 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119720723|ref|YP_921218.1| - 0.068 13.7 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter HTH_15 PF12324.8 gi|119720723|ref|YP_921218.1| - 0.082 12.9 0.6 0.26 11.3 0.0 2.1 4 0 0 4 4 2 0 Helix-turn-helix domain of alkylmercury lyase AAA_19 PF13245.6 gi|119720723|ref|YP_921218.1| - 0.087 13.2 0.8 2.6 8.4 0.2 2.5 3 0 0 3 3 3 0 AAA domain LpxK PF02606.14 gi|119720723|ref|YP_921218.1| - 0.091 11.8 0.2 0.14 11.3 0.2 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_26 PF13500.6 gi|119720723|ref|YP_921218.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|119720723|ref|YP_921218.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Torsin Fer2_2 PF01799.20 gi|119720723|ref|YP_921218.1| - 0.16 12.0 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 [2Fe-2S] binding domain Thymidylate_kin PF02223.17 gi|119720723|ref|YP_921218.1| - 0.18 11.5 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase MipZ PF09140.11 gi|119720723|ref|YP_921218.1| - 0.2 10.9 0.6 0.66 9.2 0.6 1.7 2 0 0 2 2 2 0 ATPase MipZ adh_short_C2 PF13561.6 gi|119720724|ref|YP_921219.1| - 2.5e-46 158.2 0.0 3.1e-46 157.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|119720724|ref|YP_921219.1| - 2e-32 112.3 0.0 2.3e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|119720724|ref|YP_921219.1| - 4.9e-05 23.3 0.0 9.1e-05 22.4 0.0 1.5 2 0 0 2 2 2 1 KR domain PSK_trans_fac PF07704.11 gi|119720724|ref|YP_921219.1| - 0.025 15.3 0.2 0.071 13.9 0.1 1.8 2 0 0 2 2 2 0 Rv0623-like transcription factor YAcAr PF10686.9 gi|119720724|ref|YP_921219.1| - 0.036 14.0 0.0 1.8 8.6 0.0 2.4 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family 3HCDH_N PF02737.18 gi|119720724|ref|YP_921219.1| - 0.15 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.21 gi|119720725|ref|YP_921220.1| - 1.7e-67 227.3 0.0 2.2e-67 227.0 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|119720725|ref|YP_921220.1| - 1.1e-05 25.7 0.9 5.5e-05 23.4 1.0 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|119720725|ref|YP_921220.1| - 5.3e-05 23.3 0.5 0.0014 18.7 0.1 2.1 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|119720725|ref|YP_921220.1| - 0.0039 16.8 0.1 0.0055 16.4 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|119720725|ref|YP_921220.1| - 0.0066 15.8 0.2 0.03 13.7 0.1 1.9 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.24 gi|119720725|ref|YP_921220.1| - 0.0089 15.6 4.3 1.4 8.4 2.6 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|119720725|ref|YP_921220.1| - 0.012 15.6 0.1 0.017 15.0 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|119720725|ref|YP_921220.1| - 0.016 15.7 0.1 0.026 14.9 0.1 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|119720725|ref|YP_921220.1| - 0.023 13.9 0.2 0.037 13.2 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|119720725|ref|YP_921220.1| - 0.053 13.1 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.23 gi|119720725|ref|YP_921220.1| - 0.067 13.3 1.1 0.16 12.1 1.1 1.7 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|119720725|ref|YP_921220.1| - 0.12 11.6 0.2 0.18 11.1 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain DUF3090 PF11290.8 gi|119720725|ref|YP_921220.1| - 0.2 11.4 1.1 6.2 6.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) Pyr_redox PF00070.27 gi|119720725|ref|YP_921220.1| - 1.4 9.5 3.6 2.5 8.7 0.3 2.5 2 1 1 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase MFS_1 PF07690.16 gi|119720726|ref|YP_921221.1| - 6.1e-27 94.5 63.6 1.4e-24 86.7 39.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily APA3_viroporin PF11289.8 gi|119720726|ref|YP_921221.1| - 0.21 11.1 1.1 0.51 9.9 1.1 1.6 1 0 0 1 1 1 0 Coronavirus accessory protein 3a TssN PF17555.2 gi|119720726|ref|YP_921221.1| - 2.4 7.5 8.0 1.6 8.0 4.0 2.3 2 0 0 2 2 2 0 Type VI secretion system, TssN Pyr_redox_2 PF07992.14 gi|119720727|ref|YP_921222.1| - 7.8e-48 163.2 0.1 9.9e-47 159.6 0.0 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|119720727|ref|YP_921222.1| - 1.8e-24 86.1 0.3 3.1e-24 85.4 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|119720727|ref|YP_921222.1| - 3.2e-13 50.0 0.1 1e-12 48.4 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119720727|ref|YP_921222.1| - 5.4e-09 35.7 0.1 2.2e-08 33.7 0.0 2.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|119720727|ref|YP_921222.1| - 0.0027 17.0 1.8 0.022 14.0 0.2 2.1 1 1 1 2 2 2 1 FAD binding domain DAO PF01266.24 gi|119720727|ref|YP_921222.1| - 0.0036 17.0 0.2 0.18 11.4 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|119720727|ref|YP_921222.1| - 0.0088 15.2 1.7 0.91 8.5 0.0 2.6 1 1 2 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|119720727|ref|YP_921222.1| - 0.017 14.2 0.2 2.9 6.9 0.1 2.6 1 1 2 3 3 3 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|119720727|ref|YP_921222.1| - 0.023 14.9 0.1 0.068 13.4 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|119720727|ref|YP_921222.1| - 0.034 14.0 0.0 0.078 12.9 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|119720727|ref|YP_921222.1| - 0.04 13.5 0.0 0.075 12.6 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|119720727|ref|YP_921222.1| - 0.077 12.3 0.0 0.2 10.9 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_S49 PF01343.18 gi|119720728|ref|YP_921223.1| - 1.6e-32 112.6 0.0 2.1e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|119720728|ref|YP_921223.1| - 4.6e-05 23.4 0.0 0.0033 17.3 0.0 2.2 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|119720728|ref|YP_921223.1| - 0.015 14.4 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|119720728|ref|YP_921223.1| - 0.067 12.5 0.1 0.58 9.4 0.0 2.3 2 1 1 3 3 3 0 Enoyl-CoA hydratase/isomerase DUF3377 PF11857.8 gi|119720728|ref|YP_921223.1| - 0.21 11.6 1.7 0.59 10.1 1.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) Glyco_trans_2_3 PF13632.6 gi|119720729|ref|YP_921224.1| - 1.1e-25 90.7 0.1 1.1e-25 90.7 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|119720729|ref|YP_921224.1| - 7.3e-13 48.9 0.0 1.8e-12 47.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|119720729|ref|YP_921224.1| - 4.7e-06 26.2 0.0 7.5e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|119720729|ref|YP_921224.1| - 1.1e-05 25.4 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 TM_helix PF05552.12 gi|119720730|ref|YP_921225.1| - 0.0042 17.0 1.2 0.0042 17.0 1.2 2.8 3 0 0 3 3 3 1 Conserved TM helix Multi_Drug_Res PF00893.19 gi|119720730|ref|YP_921225.1| - 0.026 15.2 4.1 0.026 15.2 4.1 1.8 2 0 0 2 2 2 0 Small Multidrug Resistance protein LapA_dom PF06305.11 gi|119720730|ref|YP_921225.1| - 0.21 11.4 12.7 0.068 13.0 3.6 3.0 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain Cortexin PF11057.8 gi|119720730|ref|YP_921225.1| - 1.1 9.2 6.5 0.75 9.7 1.9 2.4 2 0 0 2 2 2 0 Cortexin of kidney DUF2070 PF09843.9 gi|119720730|ref|YP_921225.1| - 3.4 5.8 11.9 4.6 5.4 11.5 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) MFS_1 PF07690.16 gi|119720731|ref|YP_921226.1| - 0.91 8.4 53.8 0.064 12.2 17.0 3.2 1 1 2 3 3 3 0 Major Facilitator Superfamily NTP_transferase PF00483.23 gi|119720732|ref|YP_921227.1| - 3.7e-32 111.9 0.0 7.1e-32 110.9 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119720732|ref|YP_921227.1| - 2.7e-08 34.3 0.0 3.6e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain LpxI_N PF17930.1 gi|119720732|ref|YP_921227.1| - 0.018 14.9 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 LpxI N-terminal domain Desulfoferrodox PF01880.18 gi|119720733|ref|YP_921228.1| - 1.5e-29 102.5 0.0 1.7e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|119720733|ref|YP_921228.1| - 1.3e-05 25.4 0.0 1.6e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY MFS_2 PF13347.6 gi|119720734|ref|YP_921229.1| - 7.4e-34 117.0 27.7 8.9e-34 116.8 27.7 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 gi|119720734|ref|YP_921229.1| - 3.7e-15 55.7 35.9 3.7e-15 55.7 35.9 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily OATP PF03137.20 gi|119720734|ref|YP_921229.1| - 0.26 9.5 8.5 1.1 7.5 0.7 2.5 2 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family NADH-u_ox-rdase PF10785.9 gi|119720734|ref|YP_921229.1| - 6 7.6 6.7 2.5 8.9 0.1 3.4 3 2 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit EamA PF00892.20 gi|119720735|ref|YP_921230.1| - 3.9e-37 127.5 35.5 1.2e-19 70.8 14.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|119720735|ref|YP_921230.1| - 2.3e-06 27.2 9.4 0.0018 17.7 1.3 2.4 2 1 0 2 2 2 2 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|119720735|ref|YP_921230.1| - 0.0015 18.5 4.3 0.0061 16.6 0.8 2.7 2 0 0 2 2 2 1 Putative transmembrane family 234 Nuc_sug_transp PF04142.15 gi|119720735|ref|YP_921230.1| - 0.0044 16.3 0.1 0.0093 15.2 0.1 1.5 1 0 0 1 1 1 1 Nucleotide-sugar transporter DMT_6 PF04342.12 gi|119720735|ref|YP_921230.1| - 0.048 13.9 0.2 0.17 12.1 0.2 1.9 1 0 0 1 1 1 0 Putative member of DMT superfamily (DUF486) tRNA-synt_2 PF00152.20 gi|119720736|ref|YP_921231.1| - 1.5e-30 106.3 0.0 1.9e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) MAF_flag10 PF01973.18 gi|119720737|ref|YP_921232.1| - 0.061 13.0 0.0 0.068 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF115 DUF1940 PF09155.10 gi|119720737|ref|YP_921232.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1940) Cyclophil_like PF04126.13 gi|119720738|ref|YP_921233.1| - 9.2e-31 106.1 0.0 1.6e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|119720738|ref|YP_921233.1| - 0.00029 20.8 0.0 0.00046 20.1 0.0 1.3 1 0 0 1 1 1 1 Cyclophilin-like family MR_MLE_C PF13378.6 gi|119720740|ref|YP_921235.1| - 6.6e-49 166.4 0.0 9.6e-49 165.9 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|119720740|ref|YP_921235.1| - 8.1e-12 45.4 0.0 3.1e-11 43.5 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Radical_SAM PF04055.21 gi|119720740|ref|YP_921235.1| - 0.0065 16.9 0.7 0.029 14.8 0.4 2.1 2 0 0 2 2 2 1 Radical SAM superfamily MAAL_C PF07476.11 gi|119720740|ref|YP_921235.1| - 0.01 15.0 0.1 0.015 14.5 0.1 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Enolase_C PF00113.22 gi|119720740|ref|YP_921235.1| - 0.014 14.6 0.0 0.13 11.5 0.0 2.0 2 0 0 2 2 2 0 Enolase, C-terminal TIM barrel domain P5CR_dimer PF14748.6 gi|119720742|ref|YP_921237.1| - 3.4e-31 107.6 0.3 6e-31 106.8 0.3 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|119720742|ref|YP_921237.1| - 1e-18 67.7 0.2 2.6e-18 66.4 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|119720742|ref|YP_921237.1| - 6.2e-05 22.7 1.5 0.00048 19.8 1.2 2.2 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|119720742|ref|YP_921237.1| - 0.00011 22.0 0.6 0.00021 21.1 0.6 1.4 1 0 0 1 1 1 1 Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|119720742|ref|YP_921237.1| - 0.00019 21.4 3.2 0.004 17.2 0.0 2.5 2 1 1 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|119720742|ref|YP_921237.1| - 0.00023 20.6 0.3 0.00062 19.2 0.2 1.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|119720742|ref|YP_921237.1| - 0.00053 20.2 0.1 0.00097 19.3 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|119720742|ref|YP_921237.1| - 0.0016 18.7 0.1 0.0031 17.8 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain CoA_binding_2 PF13380.6 gi|119720742|ref|YP_921237.1| - 0.0038 17.7 0.1 0.0064 17.0 0.1 1.4 1 0 0 1 1 1 1 CoA binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermofilum_pendens_Hrk_5_uid58563/NC_008696-NC_008698.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermofilum_pendens_Hrk_5_uid58563/NC_008696-NC_008698.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermofilum_pendens_Hrk_5_uid58563/NC_008696-NC_008698.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermofilum_pendens_Hrk_5_uid58563/NC_008696-NC_008698.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:05:31 2019 # [ok]