# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|385774743|ref|YP_005647311.1| - 3.8e-18 64.9 0.0 9.3e-18 63.7 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|385774743|ref|YP_005647311.1| - 7.4e-09 35.8 0.0 3.8e-08 33.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|385774743|ref|YP_005647311.1| - 1.7e-05 25.0 0.0 4e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|385774743|ref|YP_005647311.1| - 0.0098 15.3 0.0 0.025 14.0 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF2075 PF09848.4 gi|385774743|ref|YP_005647311.1| - 0.036 13.0 0.0 0.064 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KNOX1 PF03790.8 gi|385774743|ref|YP_005647311.1| - 0.11 11.8 0.0 0.25 10.7 0.0 1.6 1 0 0 1 1 1 0 KNOX1 domain TMF_DNA_bd PF12329.3 gi|385774744|ref|YP_005647312.1| - 0.00022 20.9 13.0 0.021 14.6 0.3 2.1 2 0 0 2 2 2 2 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|385774744|ref|YP_005647312.1| - 0.0004 19.8 5.0 0.086 12.3 0.1 2.1 2 0 0 2 2 2 2 Septum formation initiator DUF4201 PF13870.1 gi|385774744|ref|YP_005647312.1| - 0.00065 19.1 6.6 0.048 13.0 0.1 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4201) FlaC_arch PF05377.6 gi|385774744|ref|YP_005647312.1| - 0.0042 16.9 5.7 0.028 14.3 0.1 2.2 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) GAS PF13851.1 gi|385774744|ref|YP_005647312.1| - 0.0042 16.3 4.5 0.24 10.5 0.1 2.0 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding DUF4200 PF13863.1 gi|385774744|ref|YP_005647312.1| - 0.0075 16.2 10.3 0.095 12.6 0.9 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4200) DUF2031 PF09592.5 gi|385774744|ref|YP_005647312.1| - 0.0075 15.4 0.6 0.0075 15.4 0.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2031) NPV_P10 PF05531.7 gi|385774744|ref|YP_005647312.1| - 0.0099 16.1 0.2 1.4 9.2 0.1 2.1 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.8 gi|385774744|ref|YP_005647312.1| - 0.013 16.1 6.1 0.064 13.9 2.9 2.1 1 1 1 2 2 2 0 Occludin homology domain DUF964 PF06133.6 gi|385774744|ref|YP_005647312.1| - 0.015 15.2 1.4 0.13 12.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF964) BLOC1_2 PF10046.4 gi|385774744|ref|YP_005647312.1| - 0.016 15.3 3.9 2.1 8.5 0.7 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|385774744|ref|YP_005647312.1| - 0.017 14.7 7.8 0.025 14.1 5.4 1.3 1 1 0 1 1 1 0 IncA protein DUF972 PF06156.8 gi|385774744|ref|YP_005647312.1| - 0.021 15.1 6.4 0.48 10.7 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Spc24 PF08286.6 gi|385774744|ref|YP_005647312.1| - 0.029 14.0 2.9 0.87 9.3 0.1 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Nup54 PF13874.1 gi|385774744|ref|YP_005647312.1| - 0.03 13.9 2.8 1.5 8.4 0.3 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Med4 PF10018.4 gi|385774744|ref|YP_005647312.1| - 0.03 13.6 3.1 2 7.8 0.0 2.0 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 MscS_porin PF12795.2 gi|385774744|ref|YP_005647312.1| - 0.032 13.5 1.7 1.3 8.3 0.0 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF3375 PF11855.3 gi|385774744|ref|YP_005647312.1| - 0.037 12.7 1.0 0.037 12.7 0.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) CENP-F_leu_zip PF10473.4 gi|385774744|ref|YP_005647312.1| - 0.038 13.8 0.9 0.038 13.8 0.6 2.2 1 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Vac_Fusion PF02346.11 gi|385774744|ref|YP_005647312.1| - 0.039 13.3 3.8 0.35 10.3 0.1 2.3 2 0 0 2 2 2 0 Chordopoxvirus fusion protein Prefoldin_2 PF01920.15 gi|385774744|ref|YP_005647312.1| - 0.041 13.6 11.3 0.083 12.6 1.0 2.2 2 0 0 2 2 2 0 Prefoldin subunit Prefoldin PF02996.12 gi|385774744|ref|YP_005647312.1| - 0.041 13.5 7.7 0.37 10.4 0.2 2.1 2 0 0 2 2 2 0 Prefoldin subunit TACC PF05010.9 gi|385774744|ref|YP_005647312.1| - 0.048 13.4 0.5 0.048 13.4 0.4 2.0 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC) DUF155 PF02582.9 gi|385774744|ref|YP_005647312.1| - 0.05 13.5 0.5 0.087 12.7 0.3 1.3 1 1 0 1 1 1 0 Uncharacterised ACR, YagE family COG1723 bZIP_1 PF00170.16 gi|385774744|ref|YP_005647312.1| - 0.051 13.5 13.2 0.62 10.0 1.1 2.2 2 0 0 2 2 2 0 bZIP transcription factor DUF2730 PF10805.3 gi|385774744|ref|YP_005647312.1| - 0.053 13.2 3.8 4 7.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) Spc7 PF08317.6 gi|385774744|ref|YP_005647312.1| - 0.059 12.0 4.1 1.2 7.7 0.4 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein AKNA PF12443.3 gi|385774744|ref|YP_005647312.1| - 0.065 13.2 3.2 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 AT-hook-containing transcription factor Seryl_tRNA_N PF02403.17 gi|385774744|ref|YP_005647312.1| - 0.065 13.2 6.8 1.8 8.5 1.0 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2681 PF10883.3 gi|385774744|ref|YP_005647312.1| - 0.068 13.3 3.1 3.2 8.0 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) CCDC-167 PF15188.1 gi|385774744|ref|YP_005647312.1| - 0.071 13.0 5.0 0.1 12.5 0.2 2.3 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Ax_dynein_light PF10211.4 gi|385774744|ref|YP_005647312.1| - 0.075 12.8 6.0 0.56 10.0 0.2 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain Fib_alpha PF08702.5 gi|385774744|ref|YP_005647312.1| - 0.077 13.1 2.4 0.21 11.6 1.7 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF1319 PF07028.6 gi|385774744|ref|YP_005647312.1| - 0.085 13.0 6.0 1.8 8.7 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1319) Snapin_Pallidin PF14712.1 gi|385774744|ref|YP_005647312.1| - 0.089 13.1 1.8 4.6 7.6 0.0 2.2 2 0 0 2 2 2 0 Snapin/Pallidin DUF3373 PF11853.3 gi|385774744|ref|YP_005647312.1| - 0.099 11.1 2.7 0.57 8.6 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3373) DUF4140 PF13600.1 gi|385774744|ref|YP_005647312.1| - 0.11 12.9 4.0 3.1 8.2 0.3 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Uds1 PF15456.1 gi|385774744|ref|YP_005647312.1| - 0.11 12.4 3.5 1 9.3 0.3 2.1 2 0 0 2 2 2 0 Up-regulated During Septation Rop-like PF05082.8 gi|385774744|ref|YP_005647312.1| - 0.13 11.7 1.4 0.4 10.1 0.0 2.2 2 0 0 2 2 2 0 Rop-like Laminin_II PF06009.7 gi|385774744|ref|YP_005647312.1| - 0.13 12.0 3.8 0.6 9.8 2.6 1.9 1 1 0 1 1 1 0 Laminin Domain II Nsp1_C PF05064.8 gi|385774744|ref|YP_005647312.1| - 0.17 11.5 4.7 2.6 7.7 0.5 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region MutS_IV PF05190.13 gi|385774744|ref|YP_005647312.1| - 0.18 12.0 9.6 0.42 10.8 0.7 2.1 2 0 0 2 2 2 0 MutS family domain IV ATG16 PF08614.6 gi|385774744|ref|YP_005647312.1| - 0.2 11.4 6.0 2.4 7.9 0.4 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF342 PF03961.8 gi|385774744|ref|YP_005647312.1| - 0.22 9.9 8.2 0.47 8.8 5.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) COG2 PF06148.6 gi|385774744|ref|YP_005647312.1| - 0.23 11.3 1.7 1.7 8.5 0.1 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2951 PF11166.3 gi|385774744|ref|YP_005647312.1| - 0.28 11.0 5.0 1.5 8.7 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) Mnd1 PF03962.10 gi|385774744|ref|YP_005647312.1| - 0.3 10.7 5.7 2.5 7.7 3.9 2.0 1 1 0 1 1 1 0 Mnd1 family DUF4298 PF14131.1 gi|385774744|ref|YP_005647312.1| - 0.31 10.9 4.4 0.79 9.6 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) DUF904 PF06005.7 gi|385774744|ref|YP_005647312.1| - 0.33 11.2 8.6 1.2 9.5 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF904) FlxA PF14282.1 gi|385774744|ref|YP_005647312.1| - 0.5 10.3 3.0 6.3 6.8 0.0 2.1 2 0 0 2 2 2 0 FlxA-like protein DASH_Spc34 PF08657.5 gi|385774744|ref|YP_005647312.1| - 0.51 9.9 5.5 0.27 10.8 0.4 2.0 1 1 1 2 2 2 0 DASH complex subunit Spc34 DUF3007 PF11460.3 gi|385774744|ref|YP_005647312.1| - 0.51 10.4 4.2 0.74 9.9 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) DUF2205 PF10224.4 gi|385774744|ref|YP_005647312.1| - 0.52 9.9 7.9 1.4 8.5 0.3 2.4 2 1 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) SYCE1 PF15233.1 gi|385774744|ref|YP_005647312.1| - 0.52 10.2 7.3 2.7 7.9 0.8 2.1 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 TBPIP PF07106.8 gi|385774744|ref|YP_005647312.1| - 0.66 9.4 10.1 0.39 10.2 0.1 2.3 2 1 1 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Syntaxin-6_N PF09177.6 gi|385774744|ref|YP_005647312.1| - 0.78 10.1 5.7 5.4 7.4 0.4 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal NBP1 PF08537.5 gi|385774744|ref|YP_005647312.1| - 0.99 8.5 7.6 4.2 6.4 0.8 2.0 2 0 0 2 2 2 0 Fungal Nap binding protein NBP1 Rho_Binding PF08912.6 gi|385774744|ref|YP_005647312.1| - 1 9.7 7.8 3.7 7.9 1.3 2.4 2 0 0 2 2 2 0 Rho Binding DUF1192 PF06698.6 gi|385774744|ref|YP_005647312.1| - 1 9.2 9.7 1.3 8.9 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Cep57_CLD_2 PF14197.1 gi|385774744|ref|YP_005647312.1| - 1.1 9.1 8.2 2.8 7.9 0.4 2.2 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 UPF0449 PF15136.1 gi|385774744|ref|YP_005647312.1| - 1.2 9.3 5.5 4.8 7.4 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 DUF3166 PF11365.3 gi|385774744|ref|YP_005647312.1| - 1.2 9.5 6.1 3.8 8.0 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3166) Pox_A_type_inc PF04508.7 gi|385774744|ref|YP_005647312.1| - 1.4 8.8 18.4 0.69 9.8 1.6 4.1 2 2 1 3 3 3 0 Viral A-type inclusion protein repeat Fmp27_WPPW PF10359.4 gi|385774744|ref|YP_005647312.1| - 1.5 7.1 5.1 3.2 6.0 3.5 1.5 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIVA PF05103.8 gi|385774744|ref|YP_005647312.1| - 1.6 8.8 7.3 7.7 6.5 0.9 2.1 2 0 0 2 2 2 0 DivIVA protein CENP-Q PF13094.1 gi|385774744|ref|YP_005647312.1| - 1.6 8.6 6.5 3.7 7.5 4.5 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF1049 PF06305.6 gi|385774744|ref|YP_005647312.1| - 1.6 8.2 5.0 2.8 7.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Atg14 PF10186.4 gi|385774744|ref|YP_005647312.1| - 2 7.2 9.1 4.5 6.1 6.3 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4618 PF15397.1 gi|385774744|ref|YP_005647312.1| - 2.6 7.3 7.9 5.5 6.2 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) CorA PF01544.13 gi|385774744|ref|YP_005647312.1| - 2.8 6.8 5.1 4.7 6.1 3.5 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DMPK_coil PF08826.5 gi|385774744|ref|YP_005647312.1| - 2.9 7.8 10.3 2.6 8.0 1.7 2.3 2 0 0 2 2 2 0 DMPK coiled coil domain like NTR2 PF15458.1 gi|385774744|ref|YP_005647312.1| - 3.6 6.7 9.0 5.8 6.0 1.7 2.0 2 0 0 2 2 2 0 Nineteen complex-related protein 2 PspB PF06667.7 gi|385774744|ref|YP_005647312.1| - 3.8 7.5 7.6 1.1 9.1 1.0 2.1 2 0 0 2 2 2 0 Phage shock protein B DUF641 PF04859.7 gi|385774744|ref|YP_005647312.1| - 4.5 7.0 6.4 5 6.8 0.6 2.0 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) XhlA PF10779.4 gi|385774744|ref|YP_005647312.1| - 6.3 6.7 8.4 3.6 7.5 0.2 2.3 2 0 0 2 2 2 0 Haemolysin XhlA zf-C4H2 PF10146.4 gi|385774744|ref|YP_005647312.1| - 7.2 6.5 7.6 13 5.7 0.3 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein APG6 PF04111.7 gi|385774744|ref|YP_005647312.1| - 9.9 5.0 11.2 1.5e+02 1.2 7.9 1.9 1 1 0 1 1 1 0 Autophagy protein Apg6 TM_helix PF05552.7 gi|385774745|ref|YP_005647313.1| - 4e-21 74.4 6.6 7.2e-12 44.7 1.0 5.3 6 1 0 6 6 6 2 Conserved TM helix Colicin_V PF02674.11 gi|385774745|ref|YP_005647313.1| - 3.7 7.4 43.5 0.99 9.2 7.1 4.2 1 1 3 4 4 4 0 Colicin V production protein Pterin_4a PF01329.14 gi|385774746|ref|YP_005647314.1| - 1.6e-25 88.7 0.0 1.8e-25 88.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase HmuY PF14064.1 gi|385774748|ref|YP_005647316.1| - 0.13 12.2 0.2 0.39 10.6 0.0 1.7 2 0 0 2 2 2 0 HmuY protein TPR_11 PF13414.1 gi|385774749|ref|YP_005647317.1| - 1.7e-34 117.2 22.7 9.5e-14 50.8 0.3 4.8 4 1 1 5 5 5 4 TPR repeat TPR_1 PF00515.23 gi|385774749|ref|YP_005647317.1| - 6.4e-28 95.1 27.2 2.7e-05 23.5 1.6 8.0 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_2 PF07719.12 gi|385774749|ref|YP_005647317.1| - 7.7e-27 91.0 25.4 1.7e-05 24.3 0.7 8.1 5 3 2 8 8 8 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|385774749|ref|YP_005647317.1| - 2.5e-21 75.7 11.1 4.1e-06 27.3 0.3 4.7 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|385774749|ref|YP_005647317.1| - 4e-17 60.9 10.7 0.00014 21.7 0.1 6.1 6 1 0 6 6 5 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|385774749|ref|YP_005647317.1| - 8e-17 61.3 19.6 0.00038 20.7 0.3 6.1 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|385774749|ref|YP_005647317.1| - 9.6e-17 60.6 16.8 9.3e-07 28.7 0.7 5.7 3 1 3 6 6 6 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|385774749|ref|YP_005647317.1| - 5.2e-13 48.9 12.5 0.0002 21.4 0.7 4.5 1 1 5 6 6 6 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|385774749|ref|YP_005647317.1| - 6.1e-13 47.5 26.3 0.0037 16.9 0.1 6.6 6 1 1 7 7 6 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385774749|ref|YP_005647317.1| - 1.3e-12 47.1 10.3 0.01 16.3 0.1 7.8 2 2 6 8 8 8 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|385774749|ref|YP_005647317.1| - 2.5e-11 43.2 0.7 0.014 15.2 0.0 5.0 2 1 2 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|385774749|ref|YP_005647317.1| - 2e-09 37.2 17.9 1.5 9.4 0.1 8.1 8 0 0 8 8 8 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|385774749|ref|YP_005647317.1| - 3.4e-08 32.6 1.1 0.0011 17.8 0.0 3.3 2 1 1 3 3 3 2 NMDA receptor-regulated protein 1 TPR_21 PF09976.4 gi|385774749|ref|YP_005647317.1| - 4.1e-07 30.0 3.4 0.034 14.0 0.1 3.6 3 1 0 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|385774749|ref|YP_005647317.1| - 2.5e-06 27.2 10.2 0.018 14.9 0.3 4.7 5 1 1 6 6 5 2 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|385774749|ref|YP_005647317.1| - 9.2e-05 21.9 8.4 10 6.1 0.1 5.9 5 1 1 6 6 5 0 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|385774749|ref|YP_005647317.1| - 0.0001 22.5 0.2 0.0013 18.9 0.0 2.4 2 0 0 2 2 2 1 Alkyl sulfatase dimerisation DUF3856 PF12968.2 gi|385774749|ref|YP_005647317.1| - 0.00023 21.0 2.3 0.43 10.4 0.2 4.4 2 1 1 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|385774749|ref|YP_005647317.1| - 0.0013 18.9 0.0 33 5.2 0.0 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat BTAD PF03704.12 gi|385774749|ref|YP_005647317.1| - 0.0023 18.2 0.0 1.7 8.9 0.0 2.8 1 1 0 3 3 3 1 Bacterial transcriptional activator domain TPR_10 PF13374.1 gi|385774749|ref|YP_005647317.1| - 0.0031 17.3 7.3 0.2 11.6 0.0 5.3 6 0 0 6 6 5 1 Tetratricopeptide repeat DUF627 PF04781.7 gi|385774749|ref|YP_005647317.1| - 0.0052 16.3 0.6 0.33 10.6 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF627) Coatomer_E PF04733.9 gi|385774749|ref|YP_005647317.1| - 0.013 14.6 3.1 0.032 13.4 0.4 2.8 2 1 1 3 3 3 0 Coatomer epsilon subunit TPR_5 PF12688.2 gi|385774749|ref|YP_005647317.1| - 0.061 13.3 0.6 1.3 9.1 0.0 3.0 3 1 1 4 4 4 0 Tetratrico peptide repeat RPN7 PF10602.4 gi|385774749|ref|YP_005647317.1| - 0.063 12.6 1.6 1.7 7.9 0.4 3.4 1 1 1 2 2 2 0 26S proteasome subunit RPN7 YfdX PF10938.3 gi|385774749|ref|YP_005647317.1| - 0.19 11.3 2.4 6.6 6.3 0.0 3.2 3 1 1 4 4 3 0 YfdX protein DUF4398 PF14346.1 gi|385774749|ref|YP_005647317.1| - 1 9.4 5.1 7 6.7 0.1 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4398) AIG2 PF06094.7 gi|385774750|ref|YP_005647318.1| - 3.7e-21 75.5 4.0 3e-15 56.5 0.7 2.2 2 0 0 2 2 2 2 AIG2-like family AIG2_2 PF13772.1 gi|385774750|ref|YP_005647318.1| - 1.9e-12 47.1 1.9 1.2e-07 31.7 0.1 2.4 2 1 0 2 2 2 2 AIG2-like family LSM PF01423.17 gi|385774750|ref|YP_005647318.1| - 0.074 12.6 0.2 0.48 10.0 0.0 2.1 2 0 0 2 2 2 0 LSM domain SF3b10 PF07189.6 gi|385774750|ref|YP_005647318.1| - 0.095 12.5 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Splicing factor 3B subunit 10 (SF3b10) NfeD PF01957.13 gi|385774752|ref|YP_005647320.1| - 2.2e-15 57.0 2.9 3.3e-15 56.4 2.0 1.3 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF1953 PF09196.5 gi|385774752|ref|YP_005647320.1| - 0.15 11.8 0.8 0.52 10.0 0.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF1953) Thermopsin PF05317.6 gi|385774753|ref|YP_005647321.1| - 3.6e-54 183.4 9.8 3.6e-54 183.4 6.8 1.7 2 0 0 2 2 2 1 Thermopsin Band_7 PF01145.20 gi|385774754|ref|YP_005647322.1| - 1.2e-37 129.5 2.5 1.7e-37 129.0 1.7 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|385774754|ref|YP_005647322.1| - 0.0019 17.7 0.2 0.0044 16.5 0.2 1.6 2 0 0 2 2 2 1 SPFH domain-Band 7 family NurA PF09376.5 gi|385774755|ref|YP_005647323.1| - 3.5e-23 82.3 6.1 4.5e-23 82.0 4.3 1.1 1 0 0 1 1 1 1 NurA domain DUF4201 PF13870.1 gi|385774756|ref|YP_005647324.1| - 0.00092 18.6 13.1 0.00092 18.6 9.0 2.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) TrmB PF01978.14 gi|385774756|ref|YP_005647324.1| - 0.0057 16.3 2.6 1.5 8.6 0.0 2.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|385774756|ref|YP_005647324.1| - 0.016 15.0 0.6 2.5 8.0 0.1 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Reo_sigmaC PF04582.7 gi|385774756|ref|YP_005647324.1| - 0.031 13.4 2.0 0.14 11.3 1.0 1.8 1 1 1 2 2 2 0 Reovirus sigma C capsid protein HTH_5 PF01022.15 gi|385774756|ref|YP_005647324.1| - 0.072 12.7 0.5 0.072 12.7 0.4 2.7 4 0 0 4 4 3 0 Bacterial regulatory protein, arsR family DUF885 PF05960.6 gi|385774756|ref|YP_005647324.1| - 0.2 10.7 8.5 0.26 10.4 5.9 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Baculo_PEP_C PF04513.7 gi|385774756|ref|YP_005647324.1| - 0.24 11.1 13.9 3.7 7.3 0.9 3.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus MutS_III PF05192.13 gi|385774756|ref|YP_005647324.1| - 0.27 10.9 8.8 0.48 10.1 6.0 1.4 1 1 0 1 1 1 0 MutS domain III Allexi_40kDa PF05549.6 gi|385774756|ref|YP_005647324.1| - 0.33 10.2 15.1 0.22 10.7 3.5 2.6 1 1 1 2 2 2 0 Allexivirus 40kDa protein DASH_Duo1 PF08651.5 gi|385774756|ref|YP_005647324.1| - 0.45 10.1 10.3 4 7.0 2.5 3.6 1 1 2 3 3 3 0 DASH complex subunit Duo1 Latarcin PF10279.4 gi|385774756|ref|YP_005647324.1| - 0.58 10.3 11.7 1.5e+02 2.6 8.1 3.5 1 1 0 1 1 1 0 Latarcin precursor NPV_P10 PF05531.7 gi|385774756|ref|YP_005647324.1| - 0.66 10.2 14.4 7.6 6.8 3.4 3.6 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein CobN-Mg_chel PF02514.11 gi|385774756|ref|YP_005647324.1| - 0.76 7.0 11.1 0.88 6.8 7.7 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase DUF2664 PF10867.3 gi|385774756|ref|YP_005647324.1| - 0.87 10.2 4.7 0.33 11.6 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2664) DUF4250 PF14056.1 gi|385774756|ref|YP_005647324.1| - 1.1 9.0 7.2 0.21 11.3 0.7 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4250) BLOC1_2 PF10046.4 gi|385774756|ref|YP_005647324.1| - 1.5 9.0 36.2 0.14 12.2 6.1 3.4 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4164 PF13747.1 gi|385774756|ref|YP_005647324.1| - 2.1 8.5 17.1 2 8.6 2.2 4.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4164) CmcH_NodU PF02543.10 gi|385774756|ref|YP_005647324.1| - 2.3 7.2 4.7 1.7 7.6 1.2 1.9 1 1 1 2 2 2 0 Carbamoyltransferase Apolipoprotein PF01442.13 gi|385774756|ref|YP_005647324.1| - 2.7 7.4 11.0 4.8 6.6 7.6 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain BRO1 PF03097.13 gi|385774756|ref|YP_005647324.1| - 3.9 6.1 11.2 0.46 9.1 2.0 2.2 1 1 1 2 2 2 0 BRO1-like domain FliD_N PF02465.13 gi|385774756|ref|YP_005647324.1| - 4.5 7.7 8.5 15 5.9 2.8 3.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus MerR-DNA-bind PF09278.6 gi|385774756|ref|YP_005647324.1| - 4.9 7.6 9.9 22 5.5 2.5 3.7 3 1 0 3 3 2 0 MerR, DNA binding DUF745 PF05335.8 gi|385774756|ref|YP_005647324.1| - 5.7 6.4 6.7 3.6 7.0 2.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF745) IncA PF04156.9 gi|385774756|ref|YP_005647324.1| - 7.4 6.1 22.7 16 4.9 14.6 2.1 1 1 1 2 2 2 0 IncA protein Img2 PF05046.9 gi|385774756|ref|YP_005647324.1| - 9.6 6.5 10.3 3.2 8.0 3.7 2.7 1 1 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) KAP_NTPase PF07693.9 gi|385774757|ref|YP_005647325.1| - 4.9e-05 22.4 0.0 0.00014 20.9 0.0 1.8 1 0 0 1 1 1 1 KAP family P-loop domain AAA_16 PF13191.1 gi|385774757|ref|YP_005647325.1| - 0.0047 16.9 0.0 0.034 14.1 0.0 2.4 3 0 0 3 3 3 1 AAA ATPase domain Hemerythrin PF01814.18 gi|385774757|ref|YP_005647325.1| - 0.039 14.1 0.4 11 6.2 0.1 3.3 3 1 0 3 3 3 0 Hemerythrin HHE cation binding domain MCPsignal PF00015.16 gi|385774757|ref|YP_005647325.1| - 0.16 11.4 5.6 4.3 6.8 0.2 3.2 3 0 0 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|385774757|ref|YP_005647325.1| - 0.44 10.4 11.0 1.3 8.8 0.3 4.2 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF948) Syntaxin_2 PF14523.1 gi|385774757|ref|YP_005647325.1| - 3 7.9 21.1 0.54 10.3 1.0 5.5 6 0 0 6 6 6 0 Syntaxin-like protein DUF87 PF01935.12 gi|385774758|ref|YP_005647326.1| - 8.2e-43 146.8 1.3 8.2e-43 146.8 0.9 1.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|385774758|ref|YP_005647326.1| - 4.5e-13 49.2 0.3 2.7e-12 46.7 0.2 2.0 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|385774758|ref|YP_005647326.1| - 0.0001 21.8 0.0 0.0019 17.6 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|385774758|ref|YP_005647326.1| - 0.00054 20.1 0.3 0.22 11.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain TrwB_AAD_bind PF10412.4 gi|385774758|ref|YP_005647326.1| - 0.0066 15.1 0.0 0.051 12.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain HAS-barrel PF09378.5 gi|385774758|ref|YP_005647326.1| - 0.0083 16.0 0.4 0.046 13.6 0.1 2.3 2 0 0 2 2 2 1 HAS barrel domain DUF771 PF05595.6 gi|385774758|ref|YP_005647326.1| - 0.021 14.7 0.1 0.11 12.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF771) Zot PF05707.7 gi|385774758|ref|YP_005647326.1| - 0.024 14.0 0.1 0.15 11.4 0.0 2.2 3 0 0 3 3 3 0 Zonular occludens toxin (Zot) Thioredox_DsbH PF03190.10 gi|385774762|ref|YP_005647330.1| - 9.7e-62 207.4 0.0 1.7e-61 206.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|385774762|ref|YP_005647330.1| - 7.2e-16 57.9 0.0 1.4e-15 57.0 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|385774762|ref|YP_005647330.1| - 3.7e-05 23.8 0.0 9.4e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|385774762|ref|YP_005647330.1| - 0.0036 16.9 0.1 0.0075 15.9 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin adh_short_C2 PF13561.1 gi|385774763|ref|YP_005647331.1| - 1.6e-15 57.5 0.0 3.4e-15 56.4 0.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|385774763|ref|YP_005647331.1| - 4.7e-13 49.3 0.0 5.7e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|385774763|ref|YP_005647331.1| - 0.00012 22.1 0.0 0.00025 21.1 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|385774763|ref|YP_005647331.1| - 0.00025 20.7 0.2 0.00093 18.8 0.1 1.8 1 1 0 1 1 1 1 KR domain ADH_zinc_N PF00107.21 gi|385774763|ref|YP_005647331.1| - 0.024 14.2 0.3 5.8 6.4 0.0 2.7 2 2 0 2 2 2 0 Zinc-binding dehydrogenase TENA_THI-4 PF03070.11 gi|385774764|ref|YP_005647332.1| - 1.6e-31 109.7 0.4 1.9e-31 109.4 0.2 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family PA14 PF07691.7 gi|385774765|ref|YP_005647333.1| - 0.05 13.2 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 PA14 domain RNA_bind PF08675.6 gi|385774765|ref|YP_005647333.1| - 0.081 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 RNA binding domain Wzt_C PF14524.1 gi|385774765|ref|YP_005647333.1| - 0.37 10.4 3.6 11 5.6 0.2 2.6 1 1 2 3 3 3 0 Wzt C-terminal domain DUF91 PF01939.11 gi|385774766|ref|YP_005647334.1| - 3.2e-65 219.5 0.2 3.7e-65 219.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 Cas_Cas4 PF01930.12 gi|385774766|ref|YP_005647334.1| - 0.00031 20.6 0.1 0.00067 19.6 0.0 1.5 1 1 1 2 2 2 1 Domain of unknown function DUF83 UPF0102 PF02021.12 gi|385774766|ref|YP_005647334.1| - 0.00032 20.5 0.0 0.0026 17.6 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 PDDEXK_4 PF14281.1 gi|385774766|ref|YP_005647334.1| - 0.00055 19.8 0.4 0.00085 19.2 0.3 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.2 gi|385774766|ref|YP_005647334.1| - 0.0093 15.3 0.1 0.0097 15.3 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1626 PF07788.6 gi|385774766|ref|YP_005647334.1| - 0.022 14.5 0.8 0.055 13.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1626) DUF234 PF03008.9 gi|385774766|ref|YP_005647334.1| - 0.035 14.2 0.4 0.7 10.0 0.0 2.8 1 1 2 3 3 3 0 Archaea bacterial proteins of unknown function DUF1703 PF08011.6 gi|385774766|ref|YP_005647334.1| - 0.066 12.9 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) DUF1052 PF06319.7 gi|385774766|ref|YP_005647334.1| - 0.088 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1052) Glycos_transf_2 PF00535.21 gi|385774767|ref|YP_005647335.1| - 1.4e-16 60.6 0.0 2.4e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|385774767|ref|YP_005647335.1| - 2.9e-15 55.9 0.0 4.3e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.1 gi|385774767|ref|YP_005647335.1| - 1.4e-14 54.4 0.0 2e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Radical_SAM PF04055.16 gi|385774769|ref|YP_005647337.1| - 2.6e-11 43.9 0.3 2e-10 41.1 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385774769|ref|YP_005647337.1| - 1.1e-10 41.7 0.0 2.3e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385774769|ref|YP_005647337.1| - 1.2e-06 28.4 0.0 2.6e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|385774769|ref|YP_005647337.1| - 0.032 14.5 0.1 0.16 12.2 0.1 2.1 1 1 0 1 1 1 0 Iron-sulfur cluster-binding domain OPT PF03169.10 gi|385774770|ref|YP_005647338.1| - 0.0033 15.9 0.5 0.0043 15.5 0.4 1.2 1 0 0 1 1 1 1 OPT oligopeptide transporter protein PLDc_2 PF13091.1 gi|385774770|ref|YP_005647338.1| - 0.012 15.3 0.7 0.028 14.1 0.4 1.7 1 1 0 1 1 1 0 PLD-like domain DUF2201 PF09967.4 gi|385774770|ref|YP_005647338.1| - 0.43 10.6 2.3 0.4 10.7 0.3 1.9 2 0 0 2 2 2 0 VWA-like domain (DUF2201) Cation_efflux PF01545.16 gi|385774770|ref|YP_005647338.1| - 0.52 9.3 7.8 0.71 8.8 4.7 1.7 1 1 0 1 1 1 0 Cation efflux family DBI_PRT PF02277.12 gi|385774771|ref|YP_005647339.1| - 6.6e-44 150.3 0.1 8.6e-44 149.9 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase F-box PF00646.28 gi|385774771|ref|YP_005647339.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 F-box domain DUF3514 PF12027.3 gi|385774772|ref|YP_005647340.1| - 0.056 12.6 0.5 0.074 12.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3514) AF0941-like PF14591.1 gi|385774772|ref|YP_005647340.1| - 0.1 12.6 3.6 0.23 11.5 2.5 1.5 1 1 0 1 1 1 0 AF0941-like Aminotran_5 PF00266.14 gi|385774773|ref|YP_005647341.1| - 1e-49 169.2 0.0 1.5e-49 168.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|385774773|ref|YP_005647341.1| - 2.8e-05 23.3 0.1 0.00049 19.2 0.0 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|385774773|ref|YP_005647341.1| - 0.00027 19.3 0.1 0.00041 18.7 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme TA0956 PF11513.3 gi|385774773|ref|YP_005647341.1| - 0.13 12.3 3.5 5.7 7.0 0.1 3.0 2 1 1 3 3 3 0 Thermoplasma acidophilum protein TA0956 AMP-binding PF00501.23 gi|385774774|ref|YP_005647342.1| - 5.1e-71 239.2 0.0 6.6e-71 238.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385774774|ref|YP_005647342.1| - 1.1e-14 55.1 0.1 2e-14 54.2 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4411 PF14367.1 gi|385774775|ref|YP_005647343.1| - 0.0037 17.0 0.1 0.0048 16.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4411) DZR PF12773.2 gi|385774775|ref|YP_005647343.1| - 0.039 13.7 0.5 0.061 13.1 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|385774775|ref|YP_005647343.1| - 0.044 13.2 0.2 0.1 12.0 0.1 1.6 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger FANCL_C PF11793.3 gi|385774775|ref|YP_005647343.1| - 0.058 13.3 0.6 0.099 12.6 0.4 1.4 1 0 0 1 1 1 0 FANCL C-terminal domain DUF1272 PF06906.6 gi|385774775|ref|YP_005647343.1| - 0.062 13.1 0.2 0.099 12.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-LYAR PF08790.6 gi|385774775|ref|YP_005647343.1| - 0.08 12.6 0.6 0.15 11.7 0.4 1.4 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger Zn-ribbon_8 PF09723.5 gi|385774775|ref|YP_005647343.1| - 0.098 12.6 4.0 2.4 8.1 2.8 2.4 1 1 0 1 1 1 0 Zinc ribbon domain PIN PF01850.16 gi|385774775|ref|YP_005647343.1| - 0.11 12.8 0.2 0.32 11.3 0.2 1.8 1 1 0 1 1 1 0 PIN domain HypA PF01155.14 gi|385774775|ref|YP_005647343.1| - 0.12 12.0 0.8 0.17 11.5 0.6 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|385774775|ref|YP_005647343.1| - 0.13 11.5 1.3 0.24 10.6 0.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|385774775|ref|YP_005647343.1| - 0.14 11.6 3.2 3.7 7.1 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.1 gi|385774775|ref|YP_005647343.1| - 1.7 9.0 4.6 10 6.5 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain NAD_kinase PF01513.16 gi|385774776|ref|YP_005647344.1| - 1e-27 96.6 0.1 1.2e-27 96.4 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|385774776|ref|YP_005647344.1| - 0.028 13.8 0.0 0.053 12.9 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain MFS_1 PF07690.11 gi|385774777|ref|YP_005647345.1| - 7e-23 80.9 41.9 7e-23 80.9 29.1 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily Herpes_UL74 PF07982.7 gi|385774778|ref|YP_005647346.1| - 0.11 11.1 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Herpes UL74 glycoproteins Pyr_redox_2 PF07992.9 gi|385774779|ref|YP_005647347.1| - 2.2e-18 66.8 1.2 3.1e-18 66.3 0.8 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385774779|ref|YP_005647347.1| - 4e-18 66.2 0.3 6.8e-15 55.6 0.2 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385774779|ref|YP_005647347.1| - 3.4e-12 46.5 0.3 2.6e-09 37.3 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|385774779|ref|YP_005647347.1| - 7.4e-11 41.5 0.6 1.1e-08 34.4 0.0 3.2 3 1 1 4 4 4 2 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|385774779|ref|YP_005647347.1| - 6.3e-08 31.4 1.3 0.0003 19.4 0.0 3.4 4 1 1 5 5 5 2 HI0933-like protein DAO PF01266.19 gi|385774779|ref|YP_005647347.1| - 1.4e-07 30.7 0.3 0.014 14.3 0.0 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|385774779|ref|YP_005647347.1| - 3e-05 24.1 0.3 0.0019 18.4 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|385774779|ref|YP_005647347.1| - 8.5e-05 22.5 0.3 0.0018 18.2 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FMO-like PF00743.14 gi|385774779|ref|YP_005647347.1| - 0.00011 20.6 0.4 0.001 17.3 0.0 2.0 1 1 0 2 2 2 1 Flavin-binding monooxygenase-like Thi4 PF01946.12 gi|385774779|ref|YP_005647347.1| - 0.0039 16.3 0.3 0.024 13.7 0.0 2.3 3 0 0 3 3 3 1 Thi4 family FAD_oxidored PF12831.2 gi|385774779|ref|YP_005647347.1| - 0.0063 15.6 0.5 0.017 14.2 0.0 1.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase Met_10 PF02475.11 gi|385774780|ref|YP_005647348.1| - 4.2e-31 108.1 1.0 5e-31 107.8 0.7 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|385774780|ref|YP_005647348.1| - 0.0049 16.2 0.0 0.0079 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|385774780|ref|YP_005647348.1| - 0.025 14.6 0.0 0.035 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385774780|ref|YP_005647348.1| - 0.087 12.4 0.1 0.19 11.3 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385774780|ref|YP_005647348.1| - 0.13 12.7 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CRS1_YhbY PF01985.16 gi|385774781|ref|YP_005647349.1| - 1.4e-19 69.8 2.2 1.7e-19 69.5 1.5 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain YceG PF02618.11 gi|385774781|ref|YP_005647349.1| - 0.022 13.7 0.1 0.022 13.7 0.1 1.0 1 0 0 1 1 1 0 YceG-like family DUF3216 PF11505.3 gi|385774781|ref|YP_005647349.1| - 0.045 13.5 1.1 0.059 13.1 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3216) DUF1638 PF07796.6 gi|385774781|ref|YP_005647349.1| - 0.079 12.5 0.1 0.087 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) Rpr2 PF04032.11 gi|385774782|ref|YP_005647350.1| - 1.6e-17 63.1 0.5 2.1e-17 62.7 0.4 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain GFA PF04828.9 gi|385774782|ref|YP_005647350.1| - 0.039 13.8 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme TPR_8 PF13181.1 gi|385774782|ref|YP_005647350.1| - 0.098 12.4 0.3 0.21 11.4 0.2 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat EMG1 PF03587.9 gi|385774783|ref|YP_005647351.1| - 7.3e-50 169.0 0.3 8.2e-50 168.9 0.2 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase RDV-p3 PF09231.5 gi|385774784|ref|YP_005647352.1| - 0.0061 14.0 0.0 0.0069 13.8 0.0 1.1 1 0 0 1 1 1 1 Rice dwarf virus p3 FBP PF07299.6 gi|385774784|ref|YP_005647352.1| - 0.03 13.6 0.1 0.045 13.0 0.1 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) RHH_1 PF01402.16 gi|385774784|ref|YP_005647352.1| - 0.11 12.3 0.2 0.55 10.2 0.2 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family CLPTM1 PF05602.7 gi|385774785|ref|YP_005647353.1| - 0.028 13.1 0.1 0.028 13.1 0.1 1.1 1 0 0 1 1 1 0 Cleft lip and palate transmembrane protein 1 (CLPTM1) YfzA PF14118.1 gi|385774785|ref|YP_005647353.1| - 0.056 13.5 2.4 0.075 13.1 1.7 1.4 1 1 0 1 1 1 0 YfzA-like protein FixQ PF05545.6 gi|385774785|ref|YP_005647353.1| - 1.1 8.9 5.4 5 6.8 0.2 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Cation_efflux PF01545.16 gi|385774786|ref|YP_005647354.1| - 6.7e-34 117.2 17.7 8.4e-34 116.9 12.2 1.0 1 0 0 1 1 1 1 Cation efflux family VitK2_biosynth PF02621.9 gi|385774787|ref|YP_005647355.1| - 2.7e-51 174.2 0.0 3e-51 174.0 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis NTPase_I-T PF01931.13 gi|385774788|ref|YP_005647356.1| - 5.2e-39 133.6 0.0 5.9e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Corona_NS2 PF04753.7 gi|385774788|ref|YP_005647356.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Coronavirus non-structural protein NS2 Phosphodiest PF01663.17 gi|385774789|ref|YP_005647357.1| - 0.032 13.5 0.0 0.056 12.7 0.0 1.4 1 1 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Thioredoxin PF00085.15 gi|385774790|ref|YP_005647358.1| - 7.6e-28 96.2 0.0 1.1e-27 95.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|385774790|ref|YP_005647358.1| - 1.4e-07 31.6 0.6 7.5e-06 26.1 0.1 2.5 1 1 1 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|385774790|ref|YP_005647358.1| - 3.9e-06 26.8 0.4 0.0018 18.3 0.0 2.6 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|385774790|ref|YP_005647358.1| - 4.7e-05 23.1 0.0 7.9e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|385774790|ref|YP_005647358.1| - 0.00054 19.5 0.2 0.00064 19.2 0.2 1.2 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.6 gi|385774790|ref|YP_005647358.1| - 0.00092 19.0 0.0 0.0021 17.9 0.0 1.7 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_6 PF13848.1 gi|385774790|ref|YP_005647358.1| - 0.0038 17.0 0.2 0.0061 16.3 0.2 1.3 1 1 0 1 1 1 1 Thioredoxin-like domain Redoxin PF08534.5 gi|385774790|ref|YP_005647358.1| - 0.0041 16.6 0.0 0.0051 16.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin Phosducin PF02114.11 gi|385774790|ref|YP_005647358.1| - 0.008 14.9 0.0 0.0091 14.7 0.0 1.1 1 0 0 1 1 1 1 Phosducin DAO PF01266.19 gi|385774791|ref|YP_005647359.1| - 5.9e-22 78.0 0.0 1.1e-21 77.1 0.0 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase tRNA_deacylase PF04414.7 gi|385774792|ref|YP_005647360.1| - 7.2e-67 224.6 0.0 8.3e-67 224.4 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase His_Phos_1 PF00300.17 gi|385774793|ref|YP_005647361.1| - 5.8e-31 107.7 0.0 7.1e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Metallophos PF00149.23 gi|385774794|ref|YP_005647362.1| - 2.6e-07 30.2 1.2 1.8e-06 27.5 0.8 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|385774794|ref|YP_005647362.1| - 3.1e-07 30.3 0.0 1.5e-06 28.0 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|385774794|ref|YP_005647362.1| - 8.4e-05 21.8 0.6 0.00055 19.1 0.0 2.4 3 0 0 3 3 3 1 Metallophosphoesterase, calcineurin superfamily AAA_13 PF13166.1 gi|385774796|ref|YP_005647364.1| - 1.1e-06 27.4 55.6 0.00036 19.1 4.9 3.2 1 1 1 3 3 3 3 AAA domain AAA_27 PF13514.1 gi|385774796|ref|YP_005647364.1| - 9.7e-05 20.2 0.5 9.7e-05 20.2 0.4 3.4 1 1 1 3 3 3 1 AAA domain Myco_haema PF05692.7 gi|385774796|ref|YP_005647364.1| - 0.021 13.5 4.6 0.049 12.3 3.2 1.5 1 0 0 1 1 1 0 Mycoplasma haemagglutinin PA-IIL PF07472.6 gi|385774796|ref|YP_005647364.1| - 0.028 14.6 0.0 0.071 13.3 0.0 1.6 1 0 0 1 1 1 0 Fucose-binding lectin II (PA-IIL) SbcCD_C PF13558.1 gi|385774796|ref|YP_005647364.1| - 0.073 12.9 0.0 0.23 11.3 0.0 1.9 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|385774796|ref|YP_005647364.1| - 0.089 13.1 79.8 1.9e+03 -1.0 0.1 4.5 1 1 1 2 2 1 0 AAA domain NPV_P10 PF05531.7 gi|385774796|ref|YP_005647364.1| - 0.32 11.2 27.6 0.5 10.6 0.8 5.5 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.15 gi|385774796|ref|YP_005647364.1| - 0.71 9.6 57.3 0.039 13.7 7.9 6.2 4 2 2 6 6 6 0 Prefoldin subunit SMC_N PF02463.14 gi|385774796|ref|YP_005647364.1| - 1.5 8.0 28.0 26 3.9 18.3 3.0 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain Mnd1 PF03962.10 gi|385774796|ref|YP_005647364.1| - 2.7 7.6 48.0 0.55 9.8 5.3 4.4 2 2 2 4 4 4 0 Mnd1 family DUF2968 PF11180.3 gi|385774796|ref|YP_005647364.1| - 3.1 7.1 23.1 0.45 9.8 1.7 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2968) Filament PF00038.16 gi|385774796|ref|YP_005647364.1| - 3.3 7.0 51.9 0.34 10.3 25.0 2.4 1 1 1 2 2 2 0 Intermediate filament protein Reo_sigmaC PF04582.7 gi|385774796|ref|YP_005647364.1| - 3.7 6.6 10.2 0.8 8.8 1.3 3.1 1 1 3 4 4 4 0 Reovirus sigma C capsid protein IU_nuc_hydro PF01156.14 gi|385774797|ref|YP_005647365.1| - 6.2e-76 255.5 0.0 6.9e-76 255.4 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase FUR PF01475.14 gi|385774798|ref|YP_005647366.1| - 2.3e-23 82.4 0.0 2.6e-23 82.2 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.2 gi|385774798|ref|YP_005647366.1| - 8.6e-05 22.2 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|385774798|ref|YP_005647366.1| - 0.00041 19.9 0.1 0.01 15.4 0.0 2.6 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|385774798|ref|YP_005647366.1| - 0.003 16.9 0.7 0.0052 16.1 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385774798|ref|YP_005647366.1| - 0.0031 17.1 0.2 0.012 15.2 0.1 2.1 1 1 1 2 2 2 1 HTH domain PadR PF03551.9 gi|385774798|ref|YP_005647366.1| - 0.005 16.5 0.2 0.0081 15.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|385774798|ref|YP_005647366.1| - 0.013 15.5 0.0 0.023 14.8 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_32 PF13565.1 gi|385774798|ref|YP_005647366.1| - 0.013 16.2 0.0 0.023 15.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HxlR PF01638.12 gi|385774798|ref|YP_005647366.1| - 0.051 13.2 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_28 PF13518.1 gi|385774798|ref|YP_005647366.1| - 0.065 13.2 0.1 0.51 10.3 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.6 gi|385774798|ref|YP_005647366.1| - 0.065 12.4 0.0 0.074 12.2 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_Tnp_Tc3_2 PF01498.13 gi|385774798|ref|YP_005647366.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 2 0 0 2 2 1 0 Transposase Methyltransf_11 PF08241.7 gi|385774800|ref|YP_005647368.1| - 1.9e-13 50.6 0.0 3e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385774800|ref|YP_005647368.1| - 5.1e-05 23.0 0.0 7.2e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385774800|ref|YP_005647368.1| - 0.00014 21.4 0.2 0.00028 20.5 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385774800|ref|YP_005647368.1| - 0.00056 19.1 0.0 0.00098 18.3 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|385774800|ref|YP_005647368.1| - 0.0022 18.3 0.0 0.0057 16.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Stomoxyn PF11585.3 gi|385774800|ref|YP_005647368.1| - 0.093 12.5 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn Methyltransf_12 PF08242.7 gi|385774800|ref|YP_005647368.1| - 0.099 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cation_efflux PF01545.16 gi|385774801|ref|YP_005647369.1| - 1e-36 126.5 16.9 1.1e-36 126.3 11.7 1.0 1 0 0 1 1 1 1 Cation efflux family DUF1097 PF06496.6 gi|385774801|ref|YP_005647369.1| - 0.0096 15.7 0.7 0.02 14.7 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1097) NurA PF09376.5 gi|385774802|ref|YP_005647370.1| - 3.6e-34 118.3 1.3 4.6e-34 118.0 0.9 1.1 1 0 0 1 1 1 1 NurA domain Rad50_zn_hook PF04423.9 gi|385774803|ref|YP_005647371.1| - 1.5e-15 56.3 1.2 1.5e-15 56.3 0.8 8.2 8 2 1 9 9 8 1 Rad50 zinc hook motif AAA_27 PF13514.1 gi|385774803|ref|YP_005647371.1| - 4.2e-14 51.2 80.9 7.5e-06 23.9 0.0 5.1 3 1 2 5 5 5 3 AAA domain SMC_N PF02463.14 gi|385774803|ref|YP_005647371.1| - 1.4e-13 50.5 51.3 2.3e-12 46.6 35.5 2.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|385774803|ref|YP_005647371.1| - 8e-12 45.7 30.1 2.7e-08 34.1 7.5 4.3 2 2 2 4 4 4 2 AAA domain AAA_13 PF13166.1 gi|385774803|ref|YP_005647371.1| - 1.3e-11 43.7 110.3 0.00011 20.8 25.0 5.8 1 1 3 5 5 5 5 AAA domain AAA_23 PF13476.1 gi|385774803|ref|YP_005647371.1| - 1e-07 32.5 159.3 7.9e+03 -3.1 16.4 6.6 1 1 2 3 3 1 0 AAA domain SbcCD_C PF13558.1 gi|385774803|ref|YP_005647371.1| - 2.7e-06 27.2 0.1 1e-05 25.3 0.0 2.0 1 1 1 2 2 2 1 Putative exonuclease SbcCD, C subunit GAS PF13851.1 gi|385774803|ref|YP_005647371.1| - 3.5e-06 26.3 136.4 0.00046 19.4 23.2 6.0 2 2 3 5 5 5 4 Growth-arrest specific micro-tubule binding AAA_15 PF13175.1 gi|385774803|ref|YP_005647371.1| - 1.7e-05 24.1 5.9 1.7e-05 24.1 4.1 3.6 1 1 1 3 3 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|385774803|ref|YP_005647371.1| - 1.9e-05 24.1 0.0 3.4e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Reo_sigmaC PF04582.7 gi|385774803|ref|YP_005647371.1| - 0.00049 19.3 16.2 0.1 11.7 0.4 4.8 1 1 4 6 6 6 3 Reovirus sigma C capsid protein Cep57_CLD_2 PF14197.1 gi|385774803|ref|YP_005647371.1| - 0.0049 16.7 11.3 0.0049 16.7 7.8 8.3 5 3 2 7 7 4 1 Centrosome localisation domain of PPC89 DUF4164 PF13747.1 gi|385774803|ref|YP_005647371.1| - 0.011 15.8 7.1 0.011 15.8 5.0 9.4 4 2 5 9 9 7 0 Domain of unknown function (DUF4164) FtsK_SpoIIIE PF01580.13 gi|385774803|ref|YP_005647371.1| - 0.012 15.1 1.0 2.4 7.5 0.0 2.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF258 PF03193.11 gi|385774803|ref|YP_005647371.1| - 0.014 14.5 0.1 0.062 12.4 0.1 2.1 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|385774803|ref|YP_005647371.1| - 0.045 13.1 1.5 0.53 9.6 0.0 3.2 3 0 0 3 3 3 0 AAA domain Myosin_tail_1 PF01576.14 gi|385774803|ref|YP_005647371.1| - 0.098 10.3 119.9 0.043 11.5 12.0 3.2 1 1 2 3 3 3 0 Myosin tail PilJ PF13675.1 gi|385774803|ref|YP_005647371.1| - 0.43 10.8 23.9 1.7 9.0 0.4 6.3 3 2 2 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term Metallophos PF00149.23 gi|385774804|ref|YP_005647372.1| - 1.5e-12 47.3 0.1 2.6e-12 46.5 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|385774804|ref|YP_005647372.1| - 1.4e-11 44.4 0.0 2.1e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|385774804|ref|YP_005647372.1| - 0.033 13.3 0.3 0.44 9.6 0.0 2.2 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Ribosomal_S17e PF00833.13 gi|385774804|ref|YP_005647372.1| - 0.11 12.2 0.8 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Ribosomal S17 DUF87 PF01935.12 gi|385774805|ref|YP_005647373.1| - 1.7e-43 149.0 2.2 3.1e-43 148.2 1.5 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|385774805|ref|YP_005647373.1| - 4.1e-22 78.9 2.5 8.9e-21 74.6 1.7 2.0 1 1 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|385774805|ref|YP_005647373.1| - 1.5e-12 47.2 0.0 6.3e-12 45.2 0.0 2.1 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|385774805|ref|YP_005647373.1| - 8.2e-12 44.2 0.0 2.8e-05 22.6 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|385774805|ref|YP_005647373.1| - 1.3e-06 27.2 0.0 5.8e-06 25.1 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|385774805|ref|YP_005647373.1| - 0.00011 21.7 0.2 0.0013 18.2 0.1 2.2 1 1 0 1 1 1 1 FtsK/SpoIIIE family KdpD PF02702.12 gi|385774805|ref|YP_005647373.1| - 0.0039 16.3 0.1 0.0079 15.3 0.1 1.4 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain ABC_tran PF00005.22 gi|385774805|ref|YP_005647373.1| - 0.031 14.5 0.0 0.057 13.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DUF892 PF05974.7 gi|385774806|ref|YP_005647374.1| - 0.00056 19.7 15.9 0.12 12.2 0.8 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF892) GCOM2 PF15328.1 gi|385774806|ref|YP_005647374.1| - 0.00066 19.4 1.6 0.0055 16.4 0.9 2.2 1 1 0 1 1 1 1 Putative GRINL1B complex locus protein 2 TPR_15 PF13429.1 gi|385774806|ref|YP_005647374.1| - 0.0012 17.9 0.8 0.0096 15.0 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat Fz PF01392.17 gi|385774806|ref|YP_005647374.1| - 0.002 18.4 2.0 0.88 9.9 0.2 2.2 1 1 1 2 2 2 2 Fz domain DUF2024 PF09630.5 gi|385774806|ref|YP_005647374.1| - 0.0038 16.8 8.4 0.21 11.3 0.6 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF2024) DUF4300 PF14133.1 gi|385774806|ref|YP_005647374.1| - 0.098 11.9 7.7 1.4 8.0 1.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4300) DUF2400 PF09674.5 gi|385774806|ref|YP_005647374.1| - 0.19 11.3 6.5 0.48 10.0 1.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2400) Blo-t-5 PF11642.3 gi|385774806|ref|YP_005647374.1| - 0.48 10.1 14.4 2 8.1 0.6 3.1 2 1 1 3 3 3 0 Mite allergen Blo t 5 DUF3349 PF11829.3 gi|385774806|ref|YP_005647374.1| - 0.59 10.5 3.4 8.1 6.9 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3349) DUF445 PF04286.7 gi|385774806|ref|YP_005647374.1| - 0.59 9.5 9.2 0.81 9.1 6.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Oxidored_FMN PF00724.15 gi|385774806|ref|YP_005647374.1| - 1.2 8.1 8.5 4.7 6.1 0.4 2.1 1 1 1 2 2 2 0 NADH:flavin oxidoreductase / NADH oxidase family DUF2765 PF10963.3 gi|385774806|ref|YP_005647374.1| - 1.4 8.9 5.2 0.55 10.2 0.6 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2765) Ycf15 PF10705.4 gi|385774806|ref|YP_005647374.1| - 1.6 8.8 3.8 26 4.9 0.3 2.4 1 1 1 2 2 2 0 Chloroplast protein precursor Ycf15 putative CENP-K PF11802.3 gi|385774806|ref|YP_005647374.1| - 3.1 6.9 12.6 3.9 6.6 8.7 1.1 1 0 0 1 1 1 0 Centromere-associated protein K DUF2387 PF09526.5 gi|385774806|ref|YP_005647374.1| - 3.1 7.7 5.5 5.5 6.9 0.8 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF4407 PF14362.1 gi|385774806|ref|YP_005647374.1| - 3.3 6.5 9.4 2.9 6.7 1.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF3647 PF12363.3 gi|385774806|ref|YP_005647374.1| - 3.6 7.7 12.1 5.4 7.1 0.6 3.2 2 2 1 3 3 3 0 Phage protein Spt5_N PF11942.3 gi|385774806|ref|YP_005647374.1| - 4 8.1 11.7 3 8.5 1.5 2.6 1 1 2 3 3 3 0 Spt5 transcription elongation factor, acidic N-terminal SpoVIF PF14069.1 gi|385774806|ref|YP_005647374.1| - 6.3 6.5 8.4 0.81 9.4 1.4 2.6 1 1 2 3 3 3 0 Stage VI sporulation protein F Carb_kinase PF01256.12 gi|385774807|ref|YP_005647375.1| - 1.3e-52 178.4 0.0 1.9e-52 177.9 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|385774807|ref|YP_005647375.1| - 4.1e-43 146.8 0.0 1.8e-42 144.8 0.0 2.0 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|385774807|ref|YP_005647375.1| - 7.4e-08 31.8 0.2 4.3e-07 29.3 0.1 2.0 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family KR PF08659.5 gi|385774807|ref|YP_005647375.1| - 0.0047 16.6 0.0 0.0085 15.7 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_7 PF13241.1 gi|385774807|ref|YP_005647375.1| - 0.016 15.4 0.0 10 6.4 0.0 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding adh_short PF00106.20 gi|385774807|ref|YP_005647375.1| - 0.047 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase AhpC-TSA PF00578.16 gi|385774808|ref|YP_005647376.1| - 5e-43 145.7 0.1 6.2e-43 145.4 0.1 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385774808|ref|YP_005647376.1| - 3.4e-26 91.5 0.1 3.9e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|385774808|ref|YP_005647376.1| - 6.9e-07 29.2 0.0 1.2e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like SCO1-SenC PF02630.9 gi|385774808|ref|YP_005647376.1| - 0.0016 18.0 0.3 0.026 14.1 0.2 2.0 1 1 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.1 gi|385774808|ref|YP_005647376.1| - 0.0017 18.2 0.1 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme AAA_22 PF13401.1 gi|385774808|ref|YP_005647376.1| - 0.0028 17.7 0.1 0.0037 17.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain DUF899 PF05988.7 gi|385774808|ref|YP_005647376.1| - 0.0068 15.8 0.0 0.0082 15.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) M60-like PF13402.1 gi|385774808|ref|YP_005647376.1| - 0.012 14.4 0.0 0.012 14.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M60-like family GSHPx PF00255.14 gi|385774808|ref|YP_005647376.1| - 0.087 12.1 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Glutathione peroxidase PEPcase_2 PF14010.1 gi|385774809|ref|YP_005647377.1| - 2.3e-206 685.8 0.9 2.6e-206 685.6 0.6 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase CbiA PF01656.18 gi|385774810|ref|YP_005647378.1| - 0.015 14.7 0.0 0.02 14.3 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1641 PF07849.6 gi|385774811|ref|YP_005647379.1| - 8.9e-14 50.8 0.0 2.6e-13 49.3 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) NusB PF01029.13 gi|385774811|ref|YP_005647379.1| - 0.032 14.1 0.7 4.7 7.2 0.1 2.5 2 1 0 2 2 2 0 NusB family Pyr_redox_2 PF07992.9 gi|385774812|ref|YP_005647380.1| - 2.4e-12 47.1 0.0 4.5e-12 46.2 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385774812|ref|YP_005647380.1| - 0.019 15.3 0.1 0.92 9.9 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Abhydrolase_6 PF12697.2 gi|385774813|ref|YP_005647381.1| - 5.2e-21 75.5 0.0 6.1e-13 49.1 0.0 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|385774813|ref|YP_005647381.1| - 1.4e-18 67.0 0.0 1.6e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|385774813|ref|YP_005647381.1| - 2.1e-13 50.3 0.1 7.8e-09 35.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Ndr PF03096.9 gi|385774813|ref|YP_005647381.1| - 7.2e-06 24.6 0.3 0.0001 20.8 0.3 2.0 1 1 1 2 2 2 1 Ndr family DUF1057 PF06342.7 gi|385774813|ref|YP_005647381.1| - 0.0002 20.3 0.0 0.00027 19.8 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) Abhydrolase_2 PF02230.11 gi|385774813|ref|YP_005647381.1| - 0.00051 19.5 0.0 0.00071 19.0 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase DUF3144 PF11342.3 gi|385774813|ref|YP_005647381.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3144) DUF2250 PF10007.4 gi|385774814|ref|YP_005647382.1| - 2.5e-68 226.0 15.1 2.1e-37 126.9 2.4 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) DUF4393 PF14337.1 gi|385774814|ref|YP_005647382.1| - 1.4e-05 24.6 1.5 0.0095 15.3 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4393) DUF4423 PF14394.1 gi|385774814|ref|YP_005647382.1| - 2.3e-05 24.0 0.9 0.0015 18.1 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|385774814|ref|YP_005647382.1| - 0.00027 21.1 3.3 0.22 11.8 0.1 3.8 2 1 1 3 3 3 2 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|385774814|ref|YP_005647382.1| - 0.0019 17.9 3.7 0.21 11.4 0.3 3.3 2 1 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.14 gi|385774814|ref|YP_005647382.1| - 0.0099 15.5 0.9 0.13 11.9 0.0 2.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.11 gi|385774814|ref|YP_005647382.1| - 0.01 15.9 0.2 0.37 10.8 0.0 2.6 2 0 0 2 2 2 0 HemN C-terminal domain DUF4364 PF14277.1 gi|385774814|ref|YP_005647382.1| - 0.047 13.3 1.5 2 8.0 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) MarR_2 PF12802.2 gi|385774814|ref|YP_005647382.1| - 0.086 12.5 0.1 1.4 8.6 0.0 2.5 2 0 0 2 2 2 0 MarR family DUF2806 PF10987.3 gi|385774814|ref|YP_005647382.1| - 0.1 12.0 0.5 1.5 8.2 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2806) Phage_rep_org_N PF09681.5 gi|385774814|ref|YP_005647382.1| - 0.12 11.9 1.2 7.5 6.1 0.1 2.6 2 1 1 3 3 3 0 N-terminal phage replisome organiser (Phage_rep_org_N) RPEL PF02755.10 gi|385774814|ref|YP_005647382.1| - 1.2 8.5 7.1 0.72 9.2 0.2 3.2 3 0 0 3 3 3 0 RPEL repeat ArgK PF03308.11 gi|385774815|ref|YP_005647383.1| - 5.3e-86 287.6 2.2 6.5e-86 287.4 1.5 1.0 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|385774815|ref|YP_005647383.1| - 1.1e-08 34.7 1.3 8.6e-08 31.8 0.9 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|385774815|ref|YP_005647383.1| - 1.9e-06 27.4 0.2 4e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF87 PF01935.12 gi|385774815|ref|YP_005647383.1| - 3e-05 23.9 2.3 0.00024 20.9 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|385774815|ref|YP_005647383.1| - 0.00023 20.7 0.3 0.00057 19.4 0.1 1.6 2 0 0 2 2 2 1 AAA-like domain ATP_bind_1 PF03029.12 gi|385774815|ref|YP_005647383.1| - 0.00058 19.4 0.1 0.0036 16.8 0.0 2.1 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|385774815|ref|YP_005647383.1| - 0.00066 19.3 0.7 0.0018 18.0 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MipZ PF09140.6 gi|385774815|ref|YP_005647383.1| - 0.00084 18.4 0.0 0.0017 17.5 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ TrwB_AAD_bind PF10412.4 gi|385774815|ref|YP_005647383.1| - 0.0016 17.1 0.1 0.0027 16.4 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|385774815|ref|YP_005647383.1| - 0.002 18.9 4.0 0.0045 17.7 0.3 2.4 2 1 0 2 2 2 1 AAA domain GTP_EFTU PF00009.22 gi|385774815|ref|YP_005647383.1| - 0.0022 17.4 0.5 0.3 10.4 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain FtsK_SpoIIIE PF01580.13 gi|385774815|ref|YP_005647383.1| - 0.0032 16.9 0.2 0.014 14.8 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|385774815|ref|YP_005647383.1| - 0.0053 17.0 1.0 0.022 15.0 0.1 2.1 2 0 0 2 2 2 1 ABC transporter NTPase_1 PF03266.10 gi|385774815|ref|YP_005647383.1| - 0.0066 16.1 0.2 0.0066 16.1 0.1 2.1 2 0 0 2 2 2 1 NTPase SRP54 PF00448.17 gi|385774815|ref|YP_005647383.1| - 0.0066 15.9 0.2 0.062 12.7 0.1 2.1 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain KAP_NTPase PF07693.9 gi|385774815|ref|YP_005647383.1| - 0.019 13.9 0.0 0.049 12.6 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain AAA_19 PF13245.1 gi|385774815|ref|YP_005647383.1| - 0.026 14.2 0.5 0.064 13.0 0.3 1.7 1 0 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|385774815|ref|YP_005647383.1| - 0.027 14.4 1.3 0.065 13.1 0.9 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|385774815|ref|YP_005647383.1| - 0.028 13.3 0.1 0.028 13.3 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.1 gi|385774815|ref|YP_005647383.1| - 0.028 14.3 0.3 0.069 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|385774815|ref|YP_005647383.1| - 0.055 12.9 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|385774815|ref|YP_005647383.1| - 0.056 12.5 3.2 0.21 10.6 0.1 2.5 2 1 1 3 3 3 0 Zeta toxin AAA_30 PF13604.1 gi|385774815|ref|YP_005647383.1| - 0.06 12.9 0.1 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385774815|ref|YP_005647383.1| - 0.1 12.7 0.1 0.4 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|385774815|ref|YP_005647383.1| - 0.11 12.8 0.7 0.11 12.8 0.5 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|385774815|ref|YP_005647383.1| - 0.11 12.0 0.2 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain B12-binding PF02310.14 gi|385774816|ref|YP_005647384.1| - 9.1e-22 77.1 0.6 1.2e-21 76.7 0.3 1.3 1 1 0 1 1 1 1 B12 binding domain QRPTase_C PF01729.14 gi|385774816|ref|YP_005647384.1| - 0.015 14.8 0.6 0.044 13.3 0.1 1.8 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Nitro_FeMo-Co PF02579.12 gi|385774816|ref|YP_005647384.1| - 0.035 14.1 0.4 6.1 6.9 0.1 2.5 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor TPP_enzyme_N PF02776.13 gi|385774816|ref|YP_005647384.1| - 0.081 12.4 0.1 3.9 6.9 0.0 2.3 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FMN_dh PF01070.13 gi|385774816|ref|YP_005647384.1| - 0.1 11.4 0.2 0.7 8.6 0.1 1.8 1 1 1 2 2 2 0 FMN-dependent dehydrogenase PSS PF03034.10 gi|385774817|ref|YP_005647385.1| - 0.2 11.0 4.1 0.21 10.9 2.8 1.1 1 0 0 1 1 1 0 Phosphatidyl serine synthase DUF1211 PF06736.6 gi|385774817|ref|YP_005647385.1| - 0.68 10.1 8.9 0.36 10.9 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1211) SUR7 PF06687.7 gi|385774817|ref|YP_005647385.1| - 8.1 5.9 8.7 1.2e+02 2.0 5.8 2.0 1 1 0 1 1 1 0 SUR7/PalI family HTH_20 PF12840.2 gi|385774818|ref|YP_005647386.1| - 1.8e-06 27.6 0.0 1.1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385774818|ref|YP_005647386.1| - 4.2e-06 26.0 0.1 9.4e-06 24.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|385774818|ref|YP_005647386.1| - 1.9e-05 24.3 0.3 3.7e-05 23.3 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|385774818|ref|YP_005647386.1| - 0.00015 22.0 0.0 0.00022 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385774818|ref|YP_005647386.1| - 0.00017 21.1 0.0 0.0003 20.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|385774818|ref|YP_005647386.1| - 0.0003 20.4 0.0 0.00056 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|385774818|ref|YP_005647386.1| - 0.0025 17.3 0.0 0.004 16.6 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.1 gi|385774818|ref|YP_005647386.1| - 0.0031 17.6 0.0 0.0069 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|385774818|ref|YP_005647386.1| - 0.0037 16.9 0.1 0.0063 16.2 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MarR_2 PF12802.2 gi|385774818|ref|YP_005647386.1| - 0.0042 16.7 0.0 0.0066 16.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|385774818|ref|YP_005647386.1| - 0.0085 15.7 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain Colicin_V PF02674.11 gi|385774818|ref|YP_005647386.1| - 0.02 14.7 2.5 0.031 14.1 1.8 1.2 1 0 0 1 1 1 0 Colicin V production protein Fe_dep_repress PF01325.14 gi|385774818|ref|YP_005647386.1| - 0.026 14.4 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|385774818|ref|YP_005647386.1| - 0.027 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.4 gi|385774818|ref|YP_005647386.1| - 0.036 14.1 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.15 gi|385774818|ref|YP_005647386.1| - 0.099 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF3493 PF11998.3 gi|385774820|ref|YP_005647388.1| - 0.0064 16.3 0.8 1.5 8.8 0.2 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3493) CTV_P6 PF06706.6 gi|385774820|ref|YP_005647388.1| - 0.069 12.6 6.6 2.1 7.8 2.6 2.6 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Vma12 PF11712.3 gi|385774820|ref|YP_005647388.1| - 0.15 11.7 1.4 0.28 10.8 0.9 1.5 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF131 PF01998.12 gi|385774820|ref|YP_005647388.1| - 3.6 7.0 8.0 6.6 6.1 1.8 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF131 Pox_A14 PF05767.7 gi|385774820|ref|YP_005647388.1| - 5.2 7.0 7.2 74 3.4 4.7 2.7 2 1 0 2 2 2 0 Poxvirus virion envelope protein A14 TauE PF01925.14 gi|385774822|ref|YP_005647390.1| - 1.4e-51 175.2 35.7 1.6e-51 175.0 24.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Gly-zipper_Omp PF13488.1 gi|385774822|ref|YP_005647390.1| - 0.057 13.0 0.4 0.057 13.0 0.3 3.8 4 0 0 4 4 4 0 Glycine zipper Fe_dep_repr_C PF02742.10 gi|385774823|ref|YP_005647391.1| - 6.9e-15 54.5 0.0 1e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|385774823|ref|YP_005647391.1| - 1.3e-07 31.4 0.0 1.7e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|385774823|ref|YP_005647391.1| - 1.5e-05 25.2 0.0 2.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|385774823|ref|YP_005647391.1| - 3.6e-05 23.3 0.0 8.2e-05 22.1 0.0 1.6 2 0 0 2 2 1 1 MarR family MarR PF01047.17 gi|385774823|ref|YP_005647391.1| - 6.6e-05 22.5 0.0 0.00014 21.4 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|385774823|ref|YP_005647391.1| - 0.001 18.7 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|385774823|ref|YP_005647391.1| - 0.0019 18.0 0.1 0.0081 15.9 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix FeoC PF09012.5 gi|385774823|ref|YP_005647391.1| - 0.003 17.2 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_36 PF13730.1 gi|385774823|ref|YP_005647391.1| - 0.0035 17.4 0.0 0.0074 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|385774823|ref|YP_005647391.1| - 0.0052 16.3 0.0 0.0086 15.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|385774823|ref|YP_005647391.1| - 0.0073 15.8 0.0 0.0092 15.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.11 gi|385774823|ref|YP_005647391.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain B-block_TFIIIC PF04182.7 gi|385774823|ref|YP_005647391.1| - 0.017 14.9 0.0 0.033 14.0 0.0 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_24 PF13412.1 gi|385774823|ref|YP_005647391.1| - 0.02 14.2 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF417 PF04224.7 gi|385774823|ref|YP_005647391.1| - 0.022 14.1 0.0 0.029 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 DUF2250 PF10007.4 gi|385774823|ref|YP_005647391.1| - 0.031 14.1 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MotA_activ PF09114.5 gi|385774823|ref|YP_005647391.1| - 0.057 13.1 0.1 0.086 12.6 0.1 1.3 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HTH_38 PF13936.1 gi|385774823|ref|YP_005647391.1| - 0.09 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|385774823|ref|YP_005647391.1| - 0.093 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DHDPS PF00701.17 gi|385774824|ref|YP_005647392.1| - 1.3e-56 191.3 0.0 1.4e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF2303 PF10065.4 gi|385774824|ref|YP_005647392.1| - 0.072 11.9 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) UDG PF03167.14 gi|385774825|ref|YP_005647393.1| - 2e-41 141.0 0.0 2.4e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily adh_short_C2 PF13561.1 gi|385774826|ref|YP_005647394.1| - 2.3e-30 106.1 0.0 3.2e-30 105.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|385774826|ref|YP_005647394.1| - 1.8e-14 53.9 0.0 3.2e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385774826|ref|YP_005647394.1| - 5e-06 26.3 0.0 8.5e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|385774826|ref|YP_005647394.1| - 0.0044 17.0 0.0 0.0062 16.5 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|385774826|ref|YP_005647394.1| - 0.021 14.5 0.6 0.051 13.3 0.1 1.8 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase THF_DHG_CYH_C PF02882.14 gi|385774826|ref|YP_005647394.1| - 0.062 12.3 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Polysacc_synt_2 PF02719.10 gi|385774826|ref|YP_005647394.1| - 0.12 11.2 0.0 0.47 9.2 0.0 1.8 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein AAA_15 PF13175.1 gi|385774827|ref|YP_005647395.1| - 6.5e-20 71.5 9.8 2.5e-14 53.1 0.6 2.6 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|385774827|ref|YP_005647395.1| - 1e-18 68.3 5.3 1e-18 68.3 3.7 2.3 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|385774827|ref|YP_005647395.1| - 7.5e-07 28.6 1.9 3.5e-06 26.3 1.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385774827|ref|YP_005647395.1| - 1.8e-05 25.2 0.3 1.8e-05 25.2 0.2 2.1 2 0 0 2 2 2 1 AAA domain DUF2813 PF11398.3 gi|385774827|ref|YP_005647395.1| - 0.02 13.9 1.3 1.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) MAGE PF01454.14 gi|385774827|ref|YP_005647395.1| - 0.024 13.9 2.4 2 7.7 0.3 2.8 3 0 0 3 3 3 0 MAGE family Peptidase_M3 PF01432.15 gi|385774827|ref|YP_005647395.1| - 0.087 11.8 0.1 0.13 11.3 0.1 1.1 1 0 0 1 1 1 0 Peptidase family M3 AAA_13 PF13166.1 gi|385774827|ref|YP_005647395.1| - 0.27 9.6 1.8 0.27 9.6 0.2 1.7 2 0 0 2 2 2 0 AAA domain DUF131 PF01998.12 gi|385774828|ref|YP_005647396.1| - 7.7e-17 60.4 11.0 7.7e-17 60.4 7.7 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 Claudin_3 PF06653.6 gi|385774828|ref|YP_005647396.1| - 0.0021 17.7 4.0 0.0023 17.6 2.8 1.0 1 0 0 1 1 1 1 Tight junction protein, Claudin-like TctB PF07331.6 gi|385774828|ref|YP_005647396.1| - 0.015 14.9 5.1 0.036 13.7 3.5 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF4064 PF13273.1 gi|385774828|ref|YP_005647396.1| - 0.017 15.2 8.6 0.021 14.9 5.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) DUF3185 PF11381.3 gi|385774828|ref|YP_005647396.1| - 0.04 13.6 3.5 0.04 13.6 2.4 2.5 1 1 1 3 3 3 0 Protein of unknown function (DUF3185) Cytochrom_B_N PF00033.14 gi|385774828|ref|YP_005647396.1| - 0.049 12.9 2.6 0.057 12.7 1.8 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Baculo_11_kDa PF06143.6 gi|385774828|ref|YP_005647396.1| - 0.12 11.7 6.6 2.5 7.5 2.3 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF872 PF05915.7 gi|385774828|ref|YP_005647396.1| - 0.4 10.5 3.9 0.12 12.1 0.6 1.7 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) YfhO PF09586.5 gi|385774828|ref|YP_005647396.1| - 0.59 8.0 3.1 0.65 7.9 2.1 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF1206 PF06724.6 gi|385774828|ref|YP_005647396.1| - 0.8 9.5 3.8 17 5.2 0.0 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF912 PF06024.7 gi|385774828|ref|YP_005647396.1| - 0.92 9.5 5.6 3.7 7.6 1.8 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Bap31 PF05529.7 gi|385774828|ref|YP_005647396.1| - 1.2 8.5 3.8 2.3 7.6 0.0 2.0 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like ATP-synt_8 PF00895.15 gi|385774828|ref|YP_005647396.1| - 3 8.1 4.7 16 5.7 1.5 2.1 2 0 0 2 2 2 0 ATP synthase protein 8 DUF2892 PF11127.3 gi|385774828|ref|YP_005647396.1| - 3.8 7.3 6.5 0.94 9.3 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) DUF1517 PF07466.6 gi|385774828|ref|YP_005647396.1| - 4 6.3 7.6 1.5 7.7 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1517) DUF202 PF02656.10 gi|385774828|ref|YP_005647396.1| - 4.6 7.5 7.1 27 5.0 4.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF3784 PF12650.2 gi|385774828|ref|YP_005647396.1| - 5 7.1 15.5 2.2 8.2 1.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) DUF973 PF06157.6 gi|385774828|ref|YP_005647396.1| - 5 5.9 15.1 27 3.5 10.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF973) EphA2_TM PF14575.1 gi|385774828|ref|YP_005647396.1| - 5.1 7.5 5.4 19 5.7 0.0 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain ODV-E18 PF10717.4 gi|385774828|ref|YP_005647396.1| - 6.2 6.3 11.0 0.7 9.3 0.3 2.1 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 RDD PF06271.7 gi|385774828|ref|YP_005647396.1| - 6.9 6.5 9.9 39 4.1 6.9 1.8 1 1 0 1 1 1 0 RDD family m04gp34like PF12216.3 gi|385774829|ref|YP_005647397.1| - 0.0035 16.7 0.5 0.0068 15.7 0.3 1.5 1 0 0 1 1 1 1 Immune evasion protein NUDIX PF00293.23 gi|385774830|ref|YP_005647398.1| - 6.6e-20 71.1 0.0 1.5e-19 69.9 0.0 1.5 1 1 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|385774830|ref|YP_005647398.1| - 1.8e-05 24.1 0.0 2.6e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|385774830|ref|YP_005647398.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase tRNA-synt_1e PF01406.14 gi|385774831|ref|YP_005647399.1| - 1.9e-124 414.6 1.1 1.9e-124 414.6 0.7 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|385774831|ref|YP_005647399.1| - 7.4e-18 64.3 2.1 2.7e-09 36.1 0.6 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|385774831|ref|YP_005647399.1| - 5.2e-07 28.0 0.0 0.00053 18.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|385774831|ref|YP_005647399.1| - 1.4e-05 25.2 0.0 3.4e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.13 gi|385774831|ref|YP_005647399.1| - 8e-05 21.4 0.6 0.00076 18.2 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|385774831|ref|YP_005647399.1| - 0.00062 18.6 1.1 0.0013 17.5 0.2 1.9 1 1 1 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|385774831|ref|YP_005647399.1| - 0.011 14.4 3.3 0.052 12.2 0.2 3.2 3 1 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain bact-PGI_C PF10432.4 gi|385774832|ref|YP_005647400.1| - 5.3e-31 107.4 0.9 1.1e-30 106.3 0.6 1.6 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|385774832|ref|YP_005647400.1| - 0.0081 15.7 1.4 0.26 10.8 0.1 2.6 3 0 0 3 3 3 1 SIS domain PMBR PF09373.5 gi|385774832|ref|YP_005647400.1| - 0.047 13.6 0.2 0.17 11.9 0.1 2.1 2 0 0 2 2 2 0 Pseudomurein-binding repeat ESAG1 PF03238.8 gi|385774833|ref|YP_005647401.1| - 0.015 14.5 0.3 0.016 14.5 0.2 1.1 1 0 0 1 1 1 0 ESAG protein Pyr_redox_2 PF07992.9 gi|385774834|ref|YP_005647402.1| - 1.7e-29 103.1 0.0 1e-28 100.6 0.0 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385774834|ref|YP_005647402.1| - 2.1e-20 72.8 3.8 7.2e-15 55.1 0.6 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|385774834|ref|YP_005647402.1| - 1.8e-17 63.3 0.5 4e-17 62.2 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|385774834|ref|YP_005647402.1| - 1.7e-11 44.5 0.0 3.7e-08 33.6 0.0 2.5 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385774834|ref|YP_005647402.1| - 5.4e-08 31.7 0.8 0.017 13.5 0.0 3.3 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|385774834|ref|YP_005647402.1| - 9.4e-08 31.9 0.1 0.0026 17.7 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|385774834|ref|YP_005647402.1| - 7.6e-07 28.3 1.2 0.054 12.3 0.0 3.5 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|385774834|ref|YP_005647402.1| - 4.1e-05 23.4 2.5 0.62 9.8 0.0 3.7 2 1 0 3 3 3 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|385774834|ref|YP_005647402.1| - 0.00014 20.8 0.0 0.0005 19.0 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|385774834|ref|YP_005647402.1| - 0.00015 20.7 0.4 0.46 9.2 0.0 3.2 3 0 0 3 3 3 2 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|385774834|ref|YP_005647402.1| - 0.001 17.7 1.3 0.0092 14.6 0.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|385774834|ref|YP_005647402.1| - 0.0017 17.3 1.1 0.33 9.8 0.0 2.6 2 1 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|385774834|ref|YP_005647402.1| - 0.002 17.0 2.2 0.1 11.4 0.0 3.1 4 0 0 4 4 4 1 FAD binding domain TrkA_N PF02254.13 gi|385774834|ref|YP_005647402.1| - 0.0024 17.8 0.9 0.051 13.5 0.1 2.8 3 0 0 3 3 2 1 TrkA-N domain Mqo PF06039.10 gi|385774834|ref|YP_005647402.1| - 0.033 12.3 0.1 0.088 10.9 0.0 1.7 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) NAD_Gly3P_dh_N PF01210.18 gi|385774834|ref|YP_005647402.1| - 0.033 13.9 0.2 0.4 10.3 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|385774834|ref|YP_005647402.1| - 0.035 13.5 0.4 0.71 9.3 0.1 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|385774834|ref|YP_005647402.1| - 0.044 14.2 1.9 0.14 12.6 0.3 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|385774834|ref|YP_005647402.1| - 0.2 10.6 2.8 2.1 7.3 0.2 2.3 2 0 0 2 2 2 0 FAD binding domain NurA PF09376.5 gi|385774835|ref|YP_005647403.1| - 1.5e-22 80.3 0.7 2e-22 79.9 0.5 1.2 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|385774836|ref|YP_005647404.1| - 3.1e-22 79.3 1.0 3e-15 56.4 0.2 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|385774836|ref|YP_005647404.1| - 8.3e-14 51.9 1.3 3.5e-12 46.6 0.9 3.0 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|385774836|ref|YP_005647404.1| - 1e-07 30.9 0.0 4.4e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|385774836|ref|YP_005647404.1| - 2.1e-07 29.6 0.0 0.001 17.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.24 gi|385774836|ref|YP_005647404.1| - 2.2e-06 27.8 0.1 0.0026 17.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|385774836|ref|YP_005647404.1| - 1.9e-05 24.2 0.0 0.00013 21.5 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|385774836|ref|YP_005647404.1| - 2e-05 24.7 0.0 0.15 12.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zot PF05707.7 gi|385774836|ref|YP_005647404.1| - 0.00016 21.2 0.0 0.0017 17.8 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) Pox_A32 PF04665.7 gi|385774836|ref|YP_005647404.1| - 0.002 17.4 0.0 0.0037 16.5 0.0 1.4 1 0 0 1 1 1 1 Poxvirus A32 protein ResIII PF04851.10 gi|385774836|ref|YP_005647404.1| - 0.0021 17.9 0.1 0.33 10.7 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UPF0079 PF02367.12 gi|385774836|ref|YP_005647404.1| - 0.0085 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|385774836|ref|YP_005647404.1| - 0.022 14.3 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|385774836|ref|YP_005647404.1| - 0.026 15.0 0.0 0.083 13.3 0.0 1.9 2 0 0 2 2 1 0 Miro-like protein AAA_25 PF13481.1 gi|385774836|ref|YP_005647404.1| - 0.027 13.8 0.0 5.2 6.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|385774836|ref|YP_005647404.1| - 0.17 10.8 0.0 2.5 6.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|385774836|ref|YP_005647404.1| - 0.2 10.4 0.2 0.59 8.9 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF4116 PF13475.1 gi|385774837|ref|YP_005647405.1| - 0.82 9.1 3.2 4.8 6.7 0.2 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF4116) Erp_C PF06780.6 gi|385774837|ref|YP_005647405.1| - 0.96 9.2 3.7 4.3 7.1 0.3 2.3 1 1 0 2 2 2 0 Erp protein C-terminus 4HBT PF03061.17 gi|385774838|ref|YP_005647406.1| - 1e-18 67.2 0.2 1.3e-08 34.8 0.1 2.5 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|385774838|ref|YP_005647406.1| - 3.4e-08 33.9 0.0 0.0031 17.9 0.0 2.3 1 1 0 1 1 1 1 Thioesterase-like superfamily DUF3938 PF13074.1 gi|385774839|ref|YP_005647407.1| - 4.5 7.1 7.9 3.7 7.4 0.1 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3938) adh_short_C2 PF13561.1 gi|385774840|ref|YP_005647408.1| - 4.3e-33 115.0 0.0 5.5e-33 114.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|385774840|ref|YP_005647408.1| - 6.3e-29 101.0 0.0 1.2e-28 100.0 0.0 1.5 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|385774840|ref|YP_005647408.1| - 2.2e-09 37.2 0.0 3.6e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|385774840|ref|YP_005647408.1| - 9.5e-05 21.9 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|385774840|ref|YP_005647408.1| - 0.0016 18.4 0.0 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|385774840|ref|YP_005647408.1| - 0.0026 16.7 0.1 0.0035 16.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.8 gi|385774840|ref|YP_005647408.1| - 0.0047 16.2 0.3 0.015 14.5 0.1 2.0 2 1 0 2 2 2 1 NmrA-like family 3Beta_HSD PF01073.14 gi|385774840|ref|YP_005647408.1| - 0.027 13.1 0.1 0.043 12.5 0.1 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF3822 PF12864.2 gi|385774840|ref|YP_005647408.1| - 0.039 13.1 0.1 0.076 12.2 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3822) TrkA_N PF02254.13 gi|385774840|ref|YP_005647408.1| - 0.043 13.8 0.1 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain Exo_endo_phos PF03372.18 gi|385774841|ref|YP_005647409.1| - 3.7e-19 69.6 0.0 4.3e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|385774841|ref|YP_005647409.1| - 7.9e-15 54.5 0.0 1.9e-14 53.2 0.0 1.6 2 0 0 2 2 2 1 Endonuclease-reverse transcriptase Pkinase PF00069.20 gi|385774842|ref|YP_005647410.1| - 3.9e-18 65.5 0.0 5.5e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|385774842|ref|YP_005647410.1| - 3.4e-07 29.6 0.0 4.7e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase DUF3816 PF12822.2 gi|385774842|ref|YP_005647410.1| - 0.021 14.6 20.3 0.039 13.8 14.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) AA_permease_2 PF13520.1 gi|385774843|ref|YP_005647411.1| - 8.8e-40 136.5 59.7 1.1e-39 136.1 41.4 1.1 1 0 0 1 1 1 1 Amino acid permease HEPN PF05168.9 gi|385774844|ref|YP_005647412.1| - 2.7e-14 53.0 0.2 3.3e-14 52.7 0.1 1.0 1 0 0 1 1 1 1 HEPN domain 4HBT_2 PF13279.1 gi|385774845|ref|YP_005647413.1| - 3.3e-09 37.2 0.0 4.1e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|385774845|ref|YP_005647413.1| - 6.3e-07 29.4 0.0 8.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily TP_methylase PF00590.15 gi|385774846|ref|YP_005647414.1| - 1.3e-33 116.5 0.0 1.6e-33 116.2 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|385774847|ref|YP_005647415.1| - 1.8e-28 98.0 0.1 5.9e-28 96.4 0.0 2.0 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|385774847|ref|YP_005647415.1| - 8.9e-19 67.9 0.1 1.9e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.15 gi|385774848|ref|YP_005647416.1| - 3.9e-46 157.4 0.3 4.7e-46 157.1 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|385774849|ref|YP_005647417.1| - 2.7e-34 118.7 0.0 3.3e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Mut7-C PF01927.11 gi|385774849|ref|YP_005647417.1| - 0.07 13.0 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain TerD PF02342.13 gi|385774849|ref|YP_005647417.1| - 0.15 11.3 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 TerD domain Methyltransf_18 PF12847.2 gi|385774850|ref|YP_005647418.1| - 9e-18 64.8 0.0 1.3e-17 64.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385774850|ref|YP_005647418.1| - 1.6e-15 57.0 0.3 2.3e-15 56.5 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385774850|ref|YP_005647418.1| - 3.2e-12 46.1 1.5 4.2e-12 45.7 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|385774850|ref|YP_005647418.1| - 5.8e-12 45.5 0.1 7.5e-12 45.2 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|385774850|ref|YP_005647418.1| - 1e-10 41.0 0.2 1.2e-10 40.7 0.1 1.1 1 0 0 1 1 1 1 O-methyltransferase Ubie_methyltran PF01209.13 gi|385774850|ref|YP_005647418.1| - 1.1e-10 41.1 0.3 1.3e-10 40.7 0.2 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14 PF08704.5 gi|385774850|ref|YP_005647418.1| - 1.1e-09 38.1 0.0 1.4e-09 37.8 0.0 1.0 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit UPF0020 PF01170.13 gi|385774850|ref|YP_005647418.1| - 1.5e-09 37.6 0.0 2.4e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|385774850|ref|YP_005647418.1| - 9.8e-09 34.8 0.0 1.8e-08 33.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|385774850|ref|YP_005647418.1| - 5.3e-08 33.6 0.0 7e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|385774850|ref|YP_005647418.1| - 7e-08 31.8 0.0 1.2e-07 31.1 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|385774850|ref|YP_005647418.1| - 7.6e-08 32.3 0.0 1.9e-07 31.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385774850|ref|YP_005647418.1| - 9.3e-08 32.4 0.0 1.4e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|385774850|ref|YP_005647418.1| - 8.4e-07 28.6 0.1 1.6e-06 27.7 0.0 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|385774850|ref|YP_005647418.1| - 1.4e-06 28.5 0.0 2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|385774850|ref|YP_005647418.1| - 3.2e-05 23.3 0.0 4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|385774850|ref|YP_005647418.1| - 7.5e-05 23.1 0.0 0.00014 22.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|385774850|ref|YP_005647418.1| - 8e-05 21.7 0.5 0.0002 20.4 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase DOT1 PF08123.8 gi|385774850|ref|YP_005647418.1| - 8.6e-05 21.9 0.0 0.00015 21.1 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 Fibrillarin PF01269.12 gi|385774850|ref|YP_005647418.1| - 0.0002 20.3 0.0 0.00026 20.0 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Nol1_Nop2_Fmu PF01189.12 gi|385774850|ref|YP_005647418.1| - 0.00052 19.4 0.0 0.0078 15.6 0.0 2.2 1 1 2 3 3 3 1 NOL1/NOP2/sun family Methyltransf_23 PF13489.1 gi|385774850|ref|YP_005647418.1| - 0.00058 19.6 0.0 0.00077 19.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|385774850|ref|YP_005647418.1| - 0.0013 18.3 0.0 0.0019 17.8 0.0 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.1 gi|385774850|ref|YP_005647418.1| - 0.0027 17.4 0.0 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|385774850|ref|YP_005647418.1| - 0.012 15.6 0.0 0.054 13.4 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase N6_Mtase PF02384.11 gi|385774850|ref|YP_005647418.1| - 0.02 13.9 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase N6_N4_Mtase PF01555.13 gi|385774850|ref|YP_005647418.1| - 0.022 14.2 0.4 0.052 13.0 0.0 1.7 2 0 0 2 2 2 0 DNA methylase TehB PF03848.9 gi|385774850|ref|YP_005647418.1| - 0.031 13.4 0.0 0.055 12.6 0.0 1.4 1 1 0 1 1 1 0 Tellurite resistance protein TehB CmcI PF04989.7 gi|385774850|ref|YP_005647418.1| - 0.035 13.4 0.0 0.048 12.9 0.0 1.3 1 1 0 1 1 1 0 Cephalosporin hydroxylase RrnaAD PF00398.15 gi|385774850|ref|YP_005647418.1| - 0.063 12.2 0.0 0.086 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TRM PF02005.11 gi|385774850|ref|YP_005647418.1| - 0.097 11.5 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase CbiD PF01888.12 gi|385774851|ref|YP_005647419.1| - 1.1e-64 217.9 5.7 1.4e-64 217.6 3.9 1.1 1 0 0 1 1 1 1 CbiD TP_methylase PF00590.15 gi|385774852|ref|YP_005647420.1| - 1.8e-37 129.0 0.1 2.1e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF2325 PF10087.4 gi|385774852|ref|YP_005647420.1| - 0.12 12.2 0.0 0.37 10.6 0.0 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) CbiC PF02570.10 gi|385774853|ref|YP_005647421.1| - 7.2e-49 165.8 2.5 9.6e-49 165.5 1.7 1.2 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiX PF01903.12 gi|385774853|ref|YP_005647421.1| - 9.6e-21 73.8 0.0 1.8e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|385774853|ref|YP_005647421.1| - 0.073 12.1 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) Transposase_20 PF02371.11 gi|385774854|ref|YP_005647422.1| - 1.3e-24 86.0 0.0 2.5e-24 85.1 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|385774854|ref|YP_005647422.1| - 1.5e-11 44.1 0.0 3.9e-11 42.8 0.0 1.7 1 0 0 1 1 1 1 Transposase HTH_23 PF13384.1 gi|385774855|ref|YP_005647423.1| - 9.8e-10 37.7 0.1 4.6e-09 35.6 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|385774855|ref|YP_005647423.1| - 9.1e-08 31.9 0.0 1.7e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|385774855|ref|YP_005647423.1| - 4.4e-06 26.1 0.0 6.8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.8 gi|385774855|ref|YP_005647423.1| - 2.1e-05 23.8 9.3 4.3e-05 22.9 6.4 1.5 1 0 0 1 1 1 1 InsA N-terminal domain Sigma70_r4_2 PF08281.7 gi|385774855|ref|YP_005647423.1| - 7.1e-05 22.1 0.0 0.00015 21.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.7 gi|385774855|ref|YP_005647423.1| - 0.00024 20.5 0.0 0.00037 19.9 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|385774855|ref|YP_005647423.1| - 0.0017 18.4 0.1 0.003 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|385774855|ref|YP_005647423.1| - 0.0053 16.6 0.0 0.0081 16.1 0.0 1.3 1 0 0 1 1 1 1 Transposase Zn_Tnp_IS1595 PF12760.2 gi|385774855|ref|YP_005647423.1| - 0.013 15.2 5.4 0.013 15.2 3.7 1.6 2 0 0 2 2 1 0 Transposase zinc-ribbon domain GerE PF00196.14 gi|385774855|ref|YP_005647423.1| - 0.016 14.5 0.0 0.043 13.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_IS630 PF01710.11 gi|385774855|ref|YP_005647423.1| - 0.024 14.2 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Transposase DZR PF12773.2 gi|385774855|ref|YP_005647423.1| - 0.029 14.1 3.1 5.4 6.9 2.5 2.5 1 1 1 2 2 2 0 Double zinc ribbon NMD3 PF04981.8 gi|385774855|ref|YP_005647423.1| - 0.041 12.9 0.1 0.049 12.7 0.1 1.2 1 0 0 1 1 1 0 NMD3 family HTH_Tnp_ISL3 PF13542.1 gi|385774855|ref|YP_005647423.1| - 0.045 12.9 0.0 0.1 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.10 gi|385774855|ref|YP_005647423.1| - 0.07 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_40 PF14493.1 gi|385774855|ref|YP_005647423.1| - 0.077 13.2 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Transposase_mut PF00872.13 gi|385774855|ref|YP_005647423.1| - 0.13 10.7 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Transposase, Mutator family Zn-ribbon_8 PF09723.5 gi|385774855|ref|YP_005647423.1| - 0.31 11.0 6.1 1.3 9.0 0.6 2.7 2 0 0 2 2 2 0 Zinc ribbon domain FYVE PF01363.16 gi|385774855|ref|YP_005647423.1| - 0.56 10.1 4.7 0.74 9.7 3.3 1.4 1 1 0 1 1 1 0 FYVE zinc finger zf-Dof PF02701.10 gi|385774855|ref|YP_005647423.1| - 1 9.3 5.2 2.3 8.1 2.7 2.3 2 1 0 2 2 2 0 Dof domain, zinc finger Nudix_N_2 PF14803.1 gi|385774855|ref|YP_005647423.1| - 2.2 8.0 7.9 7.2 6.3 5.5 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|385774855|ref|YP_005647423.1| - 2.8 7.2 7.4 5.1 6.4 1.5 3.5 3 1 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|385774855|ref|YP_005647423.1| - 3.9 7.4 5.5 19 5.1 4.0 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.1 gi|385774855|ref|YP_005647423.1| - 7.1 6.7 13.8 4.7 7.3 0.5 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3463 PF11946.3 gi|385774857|ref|YP_005647425.1| - 1.7e-30 105.4 2.2 2.5e-30 104.8 1.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) Radical_SAM PF04055.16 gi|385774857|ref|YP_005647425.1| - 9.5e-18 64.9 0.1 1.9e-17 63.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385774857|ref|YP_005647425.1| - 1.5e-07 31.5 1.1 1.5e-06 28.3 0.0 2.5 2 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385774857|ref|YP_005647425.1| - 1.4e-05 25.1 0.1 8.5e-05 22.5 0.0 2.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain Lactamase_B PF00753.22 gi|385774858|ref|YP_005647426.1| - 7e-08 32.3 4.4 6.9e-07 29.1 3.1 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385774858|ref|YP_005647426.1| - 1.3e-05 24.8 0.0 2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain T2SF PF00482.18 gi|385774859|ref|YP_005647427.1| - 7.7e-08 32.2 0.1 7.7e-08 32.2 0.1 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|385774860|ref|YP_005647428.1| - 5.9e-46 156.5 0.0 9.2e-46 155.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|385774860|ref|YP_005647428.1| - 0.0019 17.6 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|385774860|ref|YP_005647428.1| - 0.006 16.8 0.0 0.057 13.7 0.0 2.4 3 0 0 3 3 3 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|385774860|ref|YP_005647428.1| - 0.03 13.8 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|385774860|ref|YP_005647428.1| - 0.055 13.7 0.1 0.055 13.7 0.1 2.5 3 0 0 3 3 3 0 AAA domain VQ PF05678.9 gi|385774860|ref|YP_005647428.1| - 0.11 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 VQ motif AAA_22 PF13401.1 gi|385774860|ref|YP_005647428.1| - 0.15 12.2 0.0 0.49 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|385774860|ref|YP_005647428.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase KaiC PF06745.8 gi|385774861|ref|YP_005647429.1| - 3.8e-17 62.1 0.5 4.6e-17 61.9 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|385774861|ref|YP_005647429.1| - 1e-05 25.0 0.0 2e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385774861|ref|YP_005647429.1| - 0.00069 19.3 0.2 0.00098 18.8 0.1 1.2 1 0 0 1 1 1 1 Archaeal ATPase DUF835 PF05763.7 gi|385774861|ref|YP_005647429.1| - 0.00096 18.7 2.7 0.0016 17.9 1.9 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF835) PAXNEB PF05625.6 gi|385774861|ref|YP_005647429.1| - 0.0011 17.8 0.6 0.71 8.6 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein DUF2075 PF09848.4 gi|385774861|ref|YP_005647429.1| - 0.02 13.8 0.3 0.027 13.4 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Elong_Iki1 PF10483.4 gi|385774861|ref|YP_005647429.1| - 0.026 13.8 0.0 0.036 13.4 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 RNA_helicase PF00910.17 gi|385774861|ref|YP_005647429.1| - 0.037 14.2 0.3 0.08 13.1 0.1 1.6 2 0 0 2 2 2 0 RNA helicase AAA_5 PF07728.9 gi|385774861|ref|YP_005647429.1| - 0.041 13.6 0.0 0.076 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|385774861|ref|YP_005647429.1| - 0.094 13.0 1.2 0.2 11.9 0.8 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|385774861|ref|YP_005647429.1| - 0.1 12.1 0.1 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|385774861|ref|YP_005647429.1| - 0.12 11.7 0.5 0.77 9.1 0.3 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Arch_flagellin PF01917.11 gi|385774863|ref|YP_005647431.1| - 5.3e-07 29.4 11.9 3.8e-06 26.6 8.2 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin DoxA PF07680.6 gi|385774863|ref|YP_005647431.1| - 0.048 13.2 3.6 0.071 12.7 2.5 1.4 1 1 0 1 1 1 0 TQO small subunit DoxA DUF1628 PF07790.6 gi|385774863|ref|YP_005647431.1| - 0.062 14.0 11.4 0.22 12.2 7.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) DUF3329 PF11808.3 gi|385774863|ref|YP_005647431.1| - 0.073 13.1 0.1 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) Proteasome_A_N PF10584.4 gi|385774863|ref|YP_005647431.1| - 0.11 11.7 0.7 6.7 6.1 0.0 2.8 2 0 0 2 2 2 0 Proteasome subunit A N-terminal signature DUF3172 PF11371.3 gi|385774863|ref|YP_005647431.1| - 0.21 11.0 1.8 0.3 10.5 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3172) Pex24p PF06398.6 gi|385774864|ref|YP_005647432.1| - 0.005 15.6 0.4 0.0079 15.0 0.2 1.4 1 1 0 1 1 1 1 Integral peroxisomal membrane peroxin AAA_11 PF13086.1 gi|385774864|ref|YP_005647432.1| - 0.013 15.0 0.4 0.014 14.9 0.3 1.2 1 0 0 1 1 1 0 AAA domain LETM1 PF07766.8 gi|385774864|ref|YP_005647432.1| - 0.029 13.4 1.3 0.045 12.7 0.9 1.4 1 0 0 1 1 1 0 LETM1-like protein Uteroglobin PF01099.12 gi|385774864|ref|YP_005647432.1| - 0.038 13.8 0.2 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 Uteroglobin family ApoO PF09769.4 gi|385774864|ref|YP_005647432.1| - 0.063 12.9 1.7 0.1 12.2 1.2 1.3 1 0 0 1 1 1 0 Apolipoprotein O RmuC PF02646.11 gi|385774864|ref|YP_005647432.1| - 0.073 11.8 9.1 0.24 10.2 3.1 2.2 2 0 0 2 2 2 0 RmuC family DUF2611 PF11022.3 gi|385774864|ref|YP_005647432.1| - 0.097 12.7 0.9 0.91 9.6 0.3 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF2611) DapH_N PF08503.5 gi|385774864|ref|YP_005647432.1| - 0.097 12.8 1.0 0.24 11.5 0.1 2.1 2 0 0 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal SPX PF03105.14 gi|385774864|ref|YP_005647432.1| - 0.16 11.7 4.6 0.23 11.2 3.2 1.1 1 0 0 1 1 1 0 SPX domain Aida_N PF08910.5 gi|385774864|ref|YP_005647432.1| - 0.47 10.7 3.1 0.32 11.2 0.2 2.2 3 1 0 3 3 3 0 Aida N-terminus Adeno_PIX PF03955.9 gi|385774864|ref|YP_005647432.1| - 0.63 10.5 4.0 0.37 11.3 1.0 1.8 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) Uds1 PF15456.1 gi|385774864|ref|YP_005647432.1| - 0.68 9.9 7.0 3.1 7.7 0.2 2.3 1 1 1 2 2 2 0 Up-regulated During Septation DASH_Dad1 PF08649.5 gi|385774864|ref|YP_005647432.1| - 0.85 9.3 7.2 0.93 9.2 0.4 2.6 1 1 1 2 2 2 0 DASH complex subunit Dad1 Hemagglutinin PF00509.13 gi|385774864|ref|YP_005647432.1| - 0.94 7.5 5.2 0.23 9.5 1.3 1.6 2 0 0 2 2 2 0 Haemagglutinin Spore_GerAC PF05504.6 gi|385774864|ref|YP_005647432.1| - 5.2 6.8 9.0 0.76 9.5 1.5 2.5 2 1 1 3 3 3 0 Spore germination B3/ GerAC like, C-terminal Arch_flagellin PF01917.11 gi|385774865|ref|YP_005647433.1| - 8.5e-19 67.9 6.7 1.5e-18 67.1 4.6 1.4 1 1 0 1 1 1 1 Archaebacterial flagellin DUF4190 PF13828.1 gi|385774865|ref|YP_005647433.1| - 1.8 8.2 7.3 0.7 9.4 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4190) VirB3 PF05101.8 gi|385774868|ref|YP_005647436.1| - 0.015 15.2 0.6 0.023 14.6 0.4 1.3 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein HTH_24 PF13412.1 gi|385774869|ref|YP_005647437.1| - 1e-09 37.5 0.6 5.4e-06 25.6 0.1 3.0 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|385774869|ref|YP_005647437.1| - 2.8e-07 30.2 3.3 5.5e-05 22.9 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix MarR_2 PF12802.2 gi|385774869|ref|YP_005647437.1| - 2.9e-07 30.0 0.0 1.2e-05 24.9 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|385774869|ref|YP_005647437.1| - 6e-06 26.4 0.0 1.1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|385774869|ref|YP_005647437.1| - 3.5e-05 23.4 0.1 0.002 17.8 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|385774869|ref|YP_005647437.1| - 5.5e-05 22.7 0.0 0.00017 21.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|385774869|ref|YP_005647437.1| - 0.0039 16.8 0.0 0.021 14.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|385774869|ref|YP_005647437.1| - 0.004 16.7 0.1 0.042 13.5 0.0 2.3 2 0 0 2 2 2 1 HTH domain UPF0122 PF04297.9 gi|385774869|ref|YP_005647437.1| - 0.0071 16.3 1.7 0.017 15.1 0.1 2.2 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like CENP-K PF11802.3 gi|385774869|ref|YP_005647437.1| - 0.023 13.9 1.3 0.036 13.2 0.9 1.2 1 0 0 1 1 1 0 Centromere-associated protein K HTH_10 PF04967.7 gi|385774869|ref|YP_005647437.1| - 0.024 14.2 0.4 0.53 9.9 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain HTH_20 PF12840.2 gi|385774869|ref|YP_005647437.1| - 0.029 14.1 0.0 0.99 9.2 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|385774869|ref|YP_005647437.1| - 0.03 14.1 0.1 0.62 9.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase FaeA PF04703.7 gi|385774869|ref|YP_005647437.1| - 0.037 14.1 0.1 9.1 6.5 0.0 2.4 2 0 0 2 2 2 0 FaeA-like protein Phage_pRha PF09669.5 gi|385774869|ref|YP_005647437.1| - 0.04 14.2 0.5 0.075 13.3 0.0 1.8 2 0 0 2 2 1 0 Phage regulatory protein Rha (Phage_pRha) CRS1_YhbY PF01985.16 gi|385774869|ref|YP_005647437.1| - 0.051 13.5 0.0 0.23 11.5 0.0 1.9 2 0 0 2 2 2 0 CRS1 / YhbY (CRM) domain NUMOD1 PF07453.8 gi|385774869|ref|YP_005647437.1| - 0.057 13.2 1.6 0.36 10.7 0.0 3.0 3 1 0 3 3 3 0 NUMOD1 domain HTH_36 PF13730.1 gi|385774869|ref|YP_005647437.1| - 0.092 12.8 0.0 0.092 12.8 0.0 2.8 3 1 0 3 3 2 0 Helix-turn-helix domain Acyl_transf_3 PF01757.17 gi|385774871|ref|YP_005647439.1| - 0.052 12.3 0.9 0.052 12.3 0.6 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF3955 PF13127.1 gi|385774871|ref|YP_005647439.1| - 0.092 12.2 2.2 2.8 7.5 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) SdpI PF13630.1 gi|385774871|ref|YP_005647439.1| - 0.78 9.4 4.2 1.3 8.7 2.9 1.4 1 1 0 1 1 1 0 SdpI/YhfL protein family RHH_1 PF01402.16 gi|385774872|ref|YP_005647440.1| - 9.9e-06 25.2 0.0 1.4e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF1655 PF07868.6 gi|385774872|ref|YP_005647440.1| - 0.079 12.9 0.4 0.2 11.6 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1655) Stk19 PF10494.4 gi|385774872|ref|YP_005647440.1| - 0.11 11.8 0.7 0.11 11.8 0.5 1.0 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 CbiA PF01656.18 gi|385774873|ref|YP_005647441.1| - 8.3e-12 44.9 0.1 4.8e-11 42.4 0.1 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385774873|ref|YP_005647441.1| - 3.6e-11 43.2 1.6 6.3e-11 42.4 0.3 1.9 2 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|385774873|ref|YP_005647441.1| - 2.5e-05 23.5 1.3 0.00013 21.1 0.1 2.4 1 1 1 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.17 gi|385774873|ref|YP_005647441.1| - 0.0027 17.1 0.1 0.15 11.4 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.6 gi|385774873|ref|YP_005647441.1| - 0.0036 16.4 0.0 0.0098 15.0 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|385774873|ref|YP_005647441.1| - 0.046 13.0 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 YhjQ protein KaiC PF06745.8 gi|385774873|ref|YP_005647441.1| - 0.056 12.5 0.0 0.11 11.5 0.0 1.6 1 1 0 1 1 1 0 KaiC Fer4_NifH PF00142.13 gi|385774873|ref|YP_005647441.1| - 0.12 11.5 0.0 0.29 10.2 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|385774874|ref|YP_005647442.1| - 3.4e-10 39.6 0.1 8.8e-10 38.3 0.1 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385774874|ref|YP_005647442.1| - 2.5e-05 24.2 0.4 5.7e-05 23.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|385774874|ref|YP_005647442.1| - 0.005 15.9 0.1 0.039 12.9 0.0 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_18 PF13238.1 gi|385774874|ref|YP_005647442.1| - 0.006 16.8 0.0 0.014 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|385774874|ref|YP_005647442.1| - 0.0061 15.6 0.0 0.0086 15.1 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ MobB PF03205.9 gi|385774874|ref|YP_005647442.1| - 0.037 13.7 0.2 0.081 12.6 0.1 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|385774874|ref|YP_005647442.1| - 0.058 14.2 0.1 0.15 12.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|385774874|ref|YP_005647442.1| - 0.1 11.5 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_26 PF13500.1 gi|385774874|ref|YP_005647442.1| - 0.12 11.9 0.2 0.79 9.2 0.2 2.4 1 1 0 1 1 1 0 AAA domain ADH_N PF08240.7 gi|385774875|ref|YP_005647443.1| - 7.5e-27 93.2 0.1 1.6e-26 92.1 0.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385774875|ref|YP_005647443.1| - 1.6e-23 82.6 0.1 3.1e-23 81.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385774875|ref|YP_005647443.1| - 8.8e-08 33.1 0.0 3e-07 31.3 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|385774875|ref|YP_005647443.1| - 0.0023 17.4 0.1 0.0049 16.4 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|385774875|ref|YP_005647443.1| - 0.0043 17.0 0.2 0.007 16.3 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|385774875|ref|YP_005647443.1| - 0.0091 15.9 1.3 0.17 11.8 0.9 2.3 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Rhodanese PF00581.15 gi|385774875|ref|YP_005647443.1| - 0.022 15.1 0.1 15 5.9 0.0 3.1 3 0 0 3 3 3 0 Rhodanese-like domain zf-AD PF07776.10 gi|385774875|ref|YP_005647443.1| - 0.09 12.7 0.3 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 Zinc-finger associated domain (zf-AD) PHD_2 PF13831.1 gi|385774875|ref|YP_005647443.1| - 0.31 10.3 0.1 0.31 10.3 0.1 1.6 2 0 0 2 2 2 0 PHD-finger Cas_VVA1548 PF09652.5 gi|385774876|ref|YP_005647444.1| - 0.06 13.3 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative CRISPR-associated protein (Cas_VVA1548) CbiA PF01656.18 gi|385774877|ref|YP_005647445.1| - 8.1e-11 41.6 0.7 3.8e-10 39.5 0.5 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385774877|ref|YP_005647445.1| - 1.1e-06 28.6 0.7 8.2e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|385774877|ref|YP_005647445.1| - 5e-06 25.7 0.8 3.4e-05 23.0 0.0 2.2 1 1 2 3 3 3 1 Anion-transporting ATPase APS_kinase PF01583.15 gi|385774877|ref|YP_005647445.1| - 0.002 17.8 0.0 0.0031 17.2 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase DUF815 PF05673.8 gi|385774877|ref|YP_005647445.1| - 0.0068 15.3 0.1 0.01 14.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|385774877|ref|YP_005647445.1| - 0.0081 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein YhjQ PF06564.7 gi|385774877|ref|YP_005647445.1| - 0.0089 15.4 0.0 0.029 13.7 0.0 1.7 2 0 0 2 2 2 1 YhjQ protein MipZ PF09140.6 gi|385774877|ref|YP_005647445.1| - 0.028 13.4 0.1 0.05 12.6 0.1 1.4 1 0 0 1 1 1 0 ATPase MipZ VirC1 PF07015.6 gi|385774877|ref|YP_005647445.1| - 0.034 13.2 0.0 0.083 11.9 0.0 1.6 1 1 0 1 1 1 0 VirC1 protein GspH PF12019.3 gi|385774878|ref|YP_005647446.1| - 0.012 15.7 0.2 0.02 15.0 0.1 1.2 1 0 0 1 1 1 0 Type II transport protein GspH MFS_1 PF07690.11 gi|385774878|ref|YP_005647446.1| - 0.027 13.1 50.1 0.078 11.6 33.6 2.5 1 1 0 1 1 1 0 Major Facilitator Superfamily eRF1_2 PF03464.10 gi|385774879|ref|YP_005647447.1| - 4.1e-41 140.4 0.0 8.2e-41 139.4 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|385774879|ref|YP_005647447.1| - 8.7e-22 77.5 4.1 1.6e-21 76.6 0.7 2.6 2 2 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|385774879|ref|YP_005647447.1| - 7e-16 57.9 0.0 2.1e-15 56.4 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 1 Ribosomal_L7Ae PF01248.21 gi|385774879|ref|YP_005647447.1| - 0.0022 17.4 0.1 0.0046 16.4 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SpoU_sub_bind PF08032.7 gi|385774879|ref|YP_005647447.1| - 0.0091 16.1 0.1 0.029 14.5 0.1 1.9 1 0 0 1 1 1 1 RNA 2'-O ribose methyltransferase substrate binding IGPS PF00218.16 gi|385774879|ref|YP_005647447.1| - 0.03 13.3 0.1 0.048 12.6 0.1 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase TroA PF01297.12 gi|385774879|ref|YP_005647447.1| - 0.095 11.9 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 Periplasmic solute binding protein family Pribosyltran PF00156.22 gi|385774880|ref|YP_005647448.1| - 9.5e-22 77.0 1.1 1.4e-21 76.5 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385774880|ref|YP_005647448.1| - 0.00032 19.9 0.0 0.00043 19.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase potato_inhibit PF00280.13 gi|385774880|ref|YP_005647448.1| - 0.078 13.1 0.2 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 Potato inhibitor I family PNP_UDP_1 PF01048.15 gi|385774881|ref|YP_005647449.1| - 5.1e-49 166.3 0.0 5.7e-49 166.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Adaptin_N PF01602.15 gi|385774881|ref|YP_005647449.1| - 0.079 11.2 0.0 0.1 10.9 0.0 1.1 1 0 0 1 1 1 0 Adaptin N terminal region polyprenyl_synt PF00348.12 gi|385774883|ref|YP_005647451.1| - 4.3e-32 110.9 0.5 6e-32 110.5 0.4 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase RimK PF08443.6 gi|385774884|ref|YP_005647452.1| - 9.5e-38 129.5 0.0 1.3e-37 129.1 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385774884|ref|YP_005647452.1| - 1.1e-14 54.5 0.0 1.5e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385774884|ref|YP_005647452.1| - 2.2e-12 46.4 0.0 1.2e-11 43.9 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|385774884|ref|YP_005647452.1| - 4.4e-12 45.4 0.1 6.6e-12 44.9 0.1 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385774884|ref|YP_005647452.1| - 1.4e-07 31.5 0.1 5.9e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain Ins134_P3_kin PF05770.6 gi|385774884|ref|YP_005647452.1| - 0.00062 18.8 0.1 0.018 14.1 0.0 2.1 1 1 1 2 2 2 1 Inositol 1, 3, 4-trisphosphate 5/6-kinase ATPgrasp_YheCD PF14398.1 gi|385774884|ref|YP_005647452.1| - 0.0015 17.4 0.0 0.011 14.5 0.0 2.0 2 0 0 2 2 2 1 YheC/D like ATP-grasp Synapsin_C PF02750.9 gi|385774884|ref|YP_005647452.1| - 0.0053 15.8 0.0 0.0068 15.5 0.0 1.2 1 0 0 1 1 1 1 Synapsin, ATP binding domain RIO1 PF01163.17 gi|385774884|ref|YP_005647452.1| - 0.015 14.6 0.1 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 RIO1 family HTH_AsnC-type PF13404.1 gi|385774885|ref|YP_005647453.1| - 9.3e-18 63.4 0.3 1.6e-17 62.7 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|385774885|ref|YP_005647453.1| - 3.6e-17 61.4 1.2 8.6e-17 60.2 0.9 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|385774885|ref|YP_005647453.1| - 4.3e-16 58.3 0.1 6.2e-16 57.8 0.1 1.3 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|385774885|ref|YP_005647453.1| - 8.7e-09 34.9 0.1 2.1e-08 33.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|385774885|ref|YP_005647453.1| - 0.00045 20.1 0.0 0.00088 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|385774885|ref|YP_005647453.1| - 0.00075 19.2 0.0 0.0018 17.9 0.0 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|385774885|ref|YP_005647453.1| - 0.0013 18.4 0.2 0.0042 16.7 0.1 1.9 2 1 1 3 3 2 1 MarR family HTH_28 PF13518.1 gi|385774885|ref|YP_005647453.1| - 0.0018 18.2 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain NapD PF03927.8 gi|385774885|ref|YP_005647453.1| - 0.002 17.9 0.0 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.1 gi|385774885|ref|YP_005647453.1| - 0.0061 16.8 0.0 0.081 13.2 0.0 2.3 2 0 0 2 2 2 1 ACT domain HTH_5 PF01022.15 gi|385774885|ref|YP_005647453.1| - 0.0065 16.1 0.1 0.019 14.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|385774885|ref|YP_005647453.1| - 0.0072 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|385774885|ref|YP_005647453.1| - 0.0095 15.6 0.4 0.04 13.6 0.1 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385774885|ref|YP_005647453.1| - 0.011 15.3 0.0 0.026 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|385774885|ref|YP_005647453.1| - 0.011 15.9 0.1 0.066 13.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|385774885|ref|YP_005647453.1| - 0.012 15.1 0.1 0.039 13.4 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_8 PF02954.14 gi|385774885|ref|YP_005647453.1| - 0.015 14.8 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_36 PF13730.1 gi|385774885|ref|YP_005647453.1| - 0.016 15.2 0.3 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Transcrip_reg PF01709.15 gi|385774885|ref|YP_005647453.1| - 0.021 13.9 0.2 0.68 9.0 0.1 2.0 1 1 1 2 2 2 0 Transcriptional regulator HTH_20 PF12840.2 gi|385774885|ref|YP_005647453.1| - 0.022 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.8 gi|385774885|ref|YP_005647453.1| - 0.029 14.6 0.4 0.049 13.9 0.1 1.5 2 0 0 2 2 1 0 Mga helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385774885|ref|YP_005647453.1| - 0.039 13.8 0.1 0.27 11.1 0.0 2.2 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|385774885|ref|YP_005647453.1| - 0.085 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Pyr_redox_2 PF07992.9 gi|385774886|ref|YP_005647454.1| - 5e-07 29.8 0.0 1.1e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385774886|ref|YP_005647454.1| - 8.8e-06 25.6 0.0 1.9e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|385774886|ref|YP_005647454.1| - 8.5e-05 22.6 0.0 0.029 14.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385774886|ref|YP_005647454.1| - 0.00065 18.6 0.0 0.0044 15.9 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|385774886|ref|YP_005647454.1| - 0.0019 18.0 0.0 0.23 11.2 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|385774886|ref|YP_005647454.1| - 0.0024 16.9 0.1 0.022 13.8 0.0 2.3 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.14 gi|385774886|ref|YP_005647454.1| - 0.004 16.2 0.0 0.0058 15.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|385774886|ref|YP_005647454.1| - 0.011 14.2 0.0 0.027 12.9 0.0 1.6 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox PF00070.22 gi|385774886|ref|YP_005647454.1| - 0.022 15.1 0.1 0.088 13.2 0.0 2.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|385774886|ref|YP_005647454.1| - 0.086 11.7 0.0 0.27 10.1 0.0 1.7 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) CRCB PF02537.10 gi|385774887|ref|YP_005647455.1| - 2 8.2 8.8 0.044 13.6 0.8 2.0 2 1 0 2 2 2 0 CrcB-like protein DUF2101 PF09874.4 gi|385774887|ref|YP_005647455.1| - 5.3 6.4 22.0 0.43 10.0 6.7 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2101) DUF2644 PF10841.3 gi|385774887|ref|YP_005647455.1| - 6.2 6.9 8.4 1.5 8.8 0.2 3.0 2 2 2 4 4 4 0 Protein of unknown function (DUF2644) Asparaginase_2 PF01112.13 gi|385774888|ref|YP_005647456.1| - 2.5e-52 177.6 6.2 1.5e-38 132.3 2.2 2.0 1 1 1 2 2 2 2 Asparaginase Metallophos_2 PF12850.2 gi|385774889|ref|YP_005647457.1| - 4.1e-11 42.9 0.0 4.9e-11 42.7 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF98 PF01947.11 gi|385774890|ref|YP_005647458.1| - 0.12 12.1 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF98) EnY2 PF10163.4 gi|385774891|ref|YP_005647459.1| - 0.12 12.2 1.4 6.7 6.7 0.4 2.6 2 1 0 2 2 2 0 Transcription factor e(y)2 rve PF00665.21 gi|385774891|ref|YP_005647459.1| - 0.14 12.2 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain DAO PF01266.19 gi|385774892|ref|YP_005647460.1| - 3.3e-11 42.7 0.0 1.6e-05 24.0 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385774892|ref|YP_005647460.1| - 1.2e-06 27.6 0.0 0.011 14.6 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|385774892|ref|YP_005647460.1| - 1.8e-06 27.2 0.0 0.084 11.9 0.1 2.9 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|385774892|ref|YP_005647460.1| - 2.2e-06 27.6 0.0 6.4e-06 26.1 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|385774892|ref|YP_005647460.1| - 0.00046 19.2 0.1 0.0013 17.7 0.1 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.17 gi|385774892|ref|YP_005647460.1| - 0.00053 18.9 0.0 0.019 13.8 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|385774892|ref|YP_005647460.1| - 0.003 17.5 0.0 0.0091 15.9 0.0 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GDI PF00996.13 gi|385774892|ref|YP_005647460.1| - 0.0075 14.6 0.0 0.017 13.5 0.0 1.5 2 0 0 2 2 2 1 GDP dissociation inhibitor Thi4 PF01946.12 gi|385774892|ref|YP_005647460.1| - 0.011 14.8 0.1 0.037 13.1 0.1 2.0 1 1 0 1 1 1 0 Thi4 family FAD_oxidored PF12831.2 gi|385774892|ref|YP_005647460.1| - 0.014 14.5 0.1 0.1 11.6 0.1 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|385774892|ref|YP_005647460.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.11 gi|385774892|ref|YP_005647460.1| - 0.15 11.4 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF2070 PF09843.4 gi|385774893|ref|YP_005647461.1| - 2e-35 121.8 0.3 3.1e-35 121.2 0.2 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Hydrolase_6 PF13344.1 gi|385774895|ref|YP_005647463.1| - 5e-24 84.1 0.0 1e-23 83.1 0.0 1.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385774895|ref|YP_005647463.1| - 6.1e-17 61.0 0.0 1.8e-16 59.5 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|385774895|ref|YP_005647463.1| - 4e-06 27.1 0.1 0.077 13.2 0.0 2.4 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385774895|ref|YP_005647463.1| - 0.0023 18.3 0.0 0.019 15.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|385774895|ref|YP_005647463.1| - 0.0028 17.2 0.1 0.0052 16.3 0.0 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase YhfZ_C PF14503.1 gi|385774895|ref|YP_005647463.1| - 0.0038 16.5 0.0 0.0064 15.8 0.0 1.3 1 0 0 1 1 1 1 YhfZ C-terminal domain PGP_phosphatase PF09419.5 gi|385774895|ref|YP_005647463.1| - 0.0069 15.7 0.2 0.064 12.6 0.0 2.2 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase FAD_binding_2 PF00890.19 gi|385774896|ref|YP_005647464.1| - 6e-111 371.2 0.1 7.2e-111 370.9 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|385774896|ref|YP_005647464.1| - 1.1e-43 148.1 0.0 1.7e-43 147.5 0.0 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|385774896|ref|YP_005647464.1| - 2e-09 36.8 0.2 9e-08 31.3 0.2 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385774896|ref|YP_005647464.1| - 1e-05 24.1 0.3 0.00017 20.1 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|385774896|ref|YP_005647464.1| - 1.4e-05 25.1 0.0 0.00012 21.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|385774896|ref|YP_005647464.1| - 4.2e-05 22.7 0.4 0.0018 17.4 0.1 2.6 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.14 gi|385774896|ref|YP_005647464.1| - 0.00014 21.0 0.2 0.00021 20.4 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|385774896|ref|YP_005647464.1| - 0.00036 20.4 0.4 0.0014 18.6 0.3 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|385774896|ref|YP_005647464.1| - 0.00052 18.9 4.4 0.0063 15.4 1.9 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|385774896|ref|YP_005647464.1| - 0.028 13.3 0.1 0.043 12.7 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|385774896|ref|YP_005647464.1| - 0.23 11.9 1.6 0.64 10.4 1.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|385774896|ref|YP_005647464.1| - 0.49 9.4 2.0 0.99 8.4 1.4 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase Fer2_3 PF13085.1 gi|385774897|ref|YP_005647465.1| - 2.9e-33 113.9 0.0 5.7e-33 113.0 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|385774897|ref|YP_005647465.1| - 1.7e-11 43.9 3.5 1.7e-11 43.9 2.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385774897|ref|YP_005647465.1| - 5.1e-10 39.4 2.5 5.1e-10 39.4 1.7 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385774897|ref|YP_005647465.1| - 5.4e-09 36.2 4.4 5.4e-09 36.2 3.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385774897|ref|YP_005647465.1| - 3.5e-08 33.1 3.8 3.5e-08 33.1 2.6 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385774897|ref|YP_005647465.1| - 8.4e-06 26.1 8.6 3.4e-05 24.1 1.8 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385774897|ref|YP_005647465.1| - 1e-05 25.1 16.3 0.00023 20.9 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385774897|ref|YP_005647465.1| - 2.3e-05 24.6 16.0 0.00075 19.7 6.1 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385774897|ref|YP_005647465.1| - 0.00028 20.3 20.0 0.0057 16.2 1.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385774897|ref|YP_005647465.1| - 0.0013 18.5 19.2 0.003 17.3 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385774897|ref|YP_005647465.1| - 0.0013 19.2 5.3 0.13 12.7 0.8 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|385774897|ref|YP_005647465.1| - 0.0042 17.8 8.9 0.0042 17.8 6.2 2.8 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|385774897|ref|YP_005647465.1| - 0.005 16.6 10.6 0.049 13.4 0.2 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer2 PF00111.22 gi|385774897|ref|YP_005647465.1| - 0.029 14.1 0.4 0.029 14.1 0.3 2.1 2 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_13 PF13370.1 gi|385774897|ref|YP_005647465.1| - 0.038 14.3 8.6 0.2 12.0 2.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|385774897|ref|YP_005647465.1| - 0.045 14.0 17.9 0.084 13.2 0.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer2_4 PF13510.1 gi|385774897|ref|YP_005647465.1| - 0.12 12.2 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain CCG PF02754.11 gi|385774898|ref|YP_005647466.1| - 5.2e-33 112.9 0.3 2.4e-18 65.9 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain VWA_2 PF13519.1 gi|385774900|ref|YP_005647468.1| - 5.8e-09 36.2 0.0 1.3e-08 35.1 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|385774900|ref|YP_005647468.1| - 2.4e-07 30.6 0.6 8.2e-07 28.9 0.0 2.1 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|385774900|ref|YP_005647468.1| - 8.4e-07 28.8 0.0 1.9e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|385774900|ref|YP_005647468.1| - 0.00012 21.3 0.0 0.00027 20.1 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein Baculo_p24 PF05073.7 gi|385774900|ref|YP_005647468.1| - 0.069 12.7 3.8 0.14 11.7 2.6 1.4 1 0 0 1 1 1 0 Baculovirus P24 capsid protein AAA_5 PF07728.9 gi|385774901|ref|YP_005647469.1| - 2.3e-28 98.6 0.0 5.2e-28 97.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|385774901|ref|YP_005647469.1| - 3.7e-06 27.0 0.3 3.4e-05 23.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_3 PF07726.6 gi|385774901|ref|YP_005647469.1| - 1.9e-05 24.2 0.0 3.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|385774901|ref|YP_005647469.1| - 5e-05 22.5 0.1 0.00043 19.5 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|385774901|ref|YP_005647469.1| - 7.2e-05 22.9 0.4 0.0006 19.9 0.0 2.6 2 2 0 2 2 2 1 AAA domain AAA PF00004.24 gi|385774901|ref|YP_005647469.1| - 0.00012 22.2 0.2 0.00062 19.9 0.0 2.3 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|385774901|ref|YP_005647469.1| - 0.00054 19.4 0.0 0.0013 18.1 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|385774901|ref|YP_005647469.1| - 0.0007 20.4 0.2 0.0095 16.7 0.0 2.4 1 1 0 2 2 2 1 AAA domain MCM PF00493.18 gi|385774901|ref|YP_005647469.1| - 0.0014 17.4 0.0 0.0044 15.8 0.0 1.8 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activ_2 PF14532.1 gi|385774901|ref|YP_005647469.1| - 0.044 13.8 0.9 0.87 9.6 0.0 3.2 3 2 0 3 3 3 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|385774901|ref|YP_005647469.1| - 0.054 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|385774901|ref|YP_005647469.1| - 0.12 12.2 0.0 0.36 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|385774901|ref|YP_005647469.1| - 0.42 10.9 3.6 1 9.6 0.1 2.8 1 1 0 2 2 2 0 AAA domain tRNA_anti-codon PF01336.20 gi|385774902|ref|YP_005647470.1| - 7.7e-07 28.8 0.4 1e-06 28.4 0.3 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain PqqD PF05402.7 gi|385774903|ref|YP_005647471.1| - 2.4e-12 46.6 0.2 2.9e-12 46.4 0.2 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4569 PF15133.1 gi|385774903|ref|YP_005647471.1| - 0.013 14.8 0.1 0.019 14.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4569) STN PF07660.9 gi|385774903|ref|YP_005647471.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain RNA_pol_A_CTD PF03118.10 gi|385774903|ref|YP_005647471.1| - 0.14 11.5 0.4 6.8 6.1 0.1 2.4 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain MoeA_N PF03453.12 gi|385774904|ref|YP_005647472.1| - 1.1e-45 154.9 0.0 1.8e-45 154.1 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|385774904|ref|YP_005647472.1| - 1.1e-26 93.0 0.1 1.7e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|385774904|ref|YP_005647472.1| - 3.3e-13 49.3 0.0 8.5e-13 48.0 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) 7TMR-HDED PF07697.6 gi|385774904|ref|YP_005647472.1| - 0.012 15.4 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 7TM-HD extracellular GHMP_kinases_N PF00288.21 gi|385774905|ref|YP_005647473.1| - 1.3e-18 66.7 1.0 3.1e-18 65.6 0.7 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385774905|ref|YP_005647473.1| - 1.2e-05 25.4 0.6 2e-05 24.7 0.0 1.7 2 0 0 2 2 2 1 GHMP kinases C terminal DUF725 PF05267.7 gi|385774905|ref|YP_005647473.1| - 0.076 12.9 0.1 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF725) Cys_Met_Meta_PP PF01053.15 gi|385774906|ref|YP_005647474.1| - 5.4e-127 423.2 0.1 6.3e-127 423.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|385774906|ref|YP_005647474.1| - 1.2e-07 30.9 0.0 2.6e-07 29.9 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|385774906|ref|YP_005647474.1| - 3.9e-06 25.8 0.0 7.8e-06 24.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|385774906|ref|YP_005647474.1| - 1.1e-05 24.7 0.0 5.4e-05 22.4 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|385774906|ref|YP_005647474.1| - 0.00048 18.9 0.0 0.0007 18.4 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.6 gi|385774906|ref|YP_005647474.1| - 0.0067 14.7 0.1 0.33 9.1 0.0 2.1 1 1 0 1 1 1 1 Methionine gamma-lyase Response_reg PF00072.19 gi|385774906|ref|YP_005647474.1| - 0.088 12.8 0.0 0.42 10.6 0.0 2.0 2 0 0 2 2 2 0 Response regulator receiver domain zf-C2H2_4 PF13894.1 gi|385774907|ref|YP_005647475.1| - 0.042 14.1 0.3 0.08 13.3 0.2 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger zf-Di19 PF05605.7 gi|385774907|ref|YP_005647475.1| - 0.077 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF1152 PF06626.7 gi|385774909|ref|YP_005647477.1| - 2.3e-121 404.4 0.0 2.7e-121 404.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) DUF3883 PF13020.1 gi|385774910|ref|YP_005647478.1| - 0.0079 15.9 0.1 0.017 14.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) DUF3800 PF12686.2 gi|385774910|ref|YP_005647478.1| - 0.021 14.4 0.6 0.024 14.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) Hjc PF01870.13 gi|385774910|ref|YP_005647478.1| - 0.065 12.8 0.1 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) KH_1 PF00013.24 gi|385774911|ref|YP_005647479.1| - 3.6e-06 26.5 6.4 4.5e-06 26.2 2.4 2.3 2 1 0 2 2 2 1 KH domain 5_3_exonuc PF01367.15 gi|385774911|ref|YP_005647479.1| - 0.0086 16.2 1.3 0.017 15.3 0.2 2.0 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Clr5 PF14420.1 gi|385774911|ref|YP_005647479.1| - 0.091 12.6 0.1 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Clr5 domain KH_3 PF13014.1 gi|385774911|ref|YP_005647479.1| - 3.3 7.4 12.9 0.051 13.2 2.3 2.7 3 0 0 3 3 3 0 KH domain RIO1 PF01163.17 gi|385774912|ref|YP_005647480.1| - 1e-64 217.4 1.3 1.4e-64 216.9 0.9 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|385774912|ref|YP_005647480.1| - 7.2e-08 31.7 0.1 1.8e-07 30.4 0.1 1.5 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|385774912|ref|YP_005647480.1| - 6.4e-06 26.0 0.0 2.2e-05 24.3 0.0 1.7 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|385774912|ref|YP_005647480.1| - 0.011 14.8 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase TaqI_C PF12950.2 gi|385774912|ref|YP_005647480.1| - 0.033 13.9 0.6 0.09 12.5 0.3 2.0 1 1 0 1 1 1 0 TaqI-like C-terminal specificity domain eIF-1a PF01176.14 gi|385774913|ref|YP_005647481.1| - 2.2e-26 91.0 0.5 2.8e-26 90.7 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Thiolase_N PF00108.18 gi|385774914|ref|YP_005647482.1| - 7.4e-86 287.3 0.6 1e-85 286.9 0.4 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|385774914|ref|YP_005647482.1| - 5.6e-36 122.6 0.0 1.1e-35 121.6 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|385774914|ref|YP_005647482.1| - 2.4e-05 23.9 1.7 4.6e-05 23.0 1.1 1.5 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|385774914|ref|YP_005647482.1| - 0.0003 20.3 0.5 0.013 15.1 0.2 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SpoVAD PF07451.6 gi|385774914|ref|YP_005647482.1| - 0.016 13.7 0.0 0.047 12.1 0.0 1.7 2 0 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) Radical_SAM PF04055.16 gi|385774915|ref|YP_005647483.1| - 8.3e-25 87.8 0.0 1.7e-24 86.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|385774915|ref|YP_005647483.1| - 4.3e-24 84.1 0.1 7.9e-24 83.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|385774915|ref|YP_005647483.1| - 4.7e-11 42.3 0.1 9.4e-11 41.3 0.1 1.6 1 0 0 1 1 1 1 TRAM domain eIF-5_eIF-2B PF01873.12 gi|385774916|ref|YP_005647484.1| - 1.9e-29 101.8 0.4 2.2e-29 101.6 0.3 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 SUI1 PF01253.17 gi|385774916|ref|YP_005647484.1| - 0.012 15.3 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor SUI1 DUF2387 PF09526.5 gi|385774916|ref|YP_005647484.1| - 0.015 15.2 0.2 0.026 14.4 0.2 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Elf1 PF05129.8 gi|385774916|ref|YP_005647484.1| - 0.047 13.3 0.6 0.086 12.5 0.4 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|385774916|ref|YP_005647484.1| - 0.1 12.9 0.7 0.53 10.6 0.7 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar Cys_rich_KTR PF14205.1 gi|385774916|ref|YP_005647484.1| - 0.14 11.5 6.2 0.48 9.9 0.1 2.9 2 1 0 3 3 3 0 Cysteine-rich KTR FCH PF00611.18 gi|385774916|ref|YP_005647484.1| - 0.16 12.2 0.3 0.32 11.2 0.2 1.8 1 1 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain GATA PF00320.22 gi|385774916|ref|YP_005647484.1| - 0.18 11.1 0.8 0.34 10.3 0.6 1.4 1 0 0 1 1 1 0 GATA zinc finger DUF424 PF04242.8 gi|385774917|ref|YP_005647485.1| - 9e-28 96.1 0.8 9.9e-28 96.0 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MinC_N PF05209.8 gi|385774917|ref|YP_005647485.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.4 1 1 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain NMD3 PF04981.8 gi|385774918|ref|YP_005647486.1| - 8.6e-54 182.1 3.1 9.7e-54 181.9 2.1 1.0 1 0 0 1 1 1 1 NMD3 family Nudix_N_2 PF14803.1 gi|385774918|ref|YP_005647486.1| - 0.14 11.9 4.7 23 4.7 0.0 3.4 3 0 0 3 3 3 0 Nudix N-terminal Rpr2 PF04032.11 gi|385774918|ref|YP_005647486.1| - 0.18 11.6 3.2 0.96 9.3 0.6 2.6 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2602 PF10782.4 gi|385774918|ref|YP_005647486.1| - 0.25 11.1 4.7 4.5 7.2 0.9 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2602) DZR PF12773.2 gi|385774918|ref|YP_005647486.1| - 0.36 10.6 5.5 11 5.9 2.5 2.9 2 1 1 3 3 3 0 Double zinc ribbon zf-C4pol PF14260.1 gi|385774918|ref|YP_005647486.1| - 0.46 10.5 3.3 16 5.5 0.0 2.5 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta OrfB_Zn_ribbon PF07282.6 gi|385774918|ref|YP_005647486.1| - 1.7 8.3 4.6 0.46 10.1 0.2 2.2 2 1 1 3 3 3 0 Putative transposase DNA-binding domain RNase_HII PF01351.13 gi|385774919|ref|YP_005647487.1| - 3.8e-44 150.6 0.0 4.4e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII TGS PF02824.16 gi|385774920|ref|YP_005647488.1| - 9.2e-21 73.4 0.0 1.7e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 TGS domain DUF2095 PF09868.4 gi|385774920|ref|YP_005647488.1| - 0.053 13.2 0.1 0.16 11.7 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) T2SF PF00482.18 gi|385774921|ref|YP_005647489.1| - 2.4e-12 46.8 3.2 2.1e-07 30.8 0.2 4.5 6 1 0 6 6 6 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|385774922|ref|YP_005647490.1| - 1.5e-46 158.4 0.1 6.2e-46 156.4 0.0 1.9 1 1 1 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|385774922|ref|YP_005647490.1| - 0.014 15.6 0.0 0.038 14.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter cobW PF02492.14 gi|385774922|ref|YP_005647490.1| - 0.019 14.4 0.1 0.036 13.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|385774922|ref|YP_005647490.1| - 0.039 13.6 0.1 0.074 12.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PCMT PF01135.14 gi|385774922|ref|YP_005647490.1| - 0.063 12.8 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AAA_14 PF13173.1 gi|385774922|ref|YP_005647490.1| - 0.065 13.1 0.9 1.6 8.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|385774922|ref|YP_005647490.1| - 0.083 12.8 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|385774922|ref|YP_005647490.1| - 0.092 12.1 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|385774922|ref|YP_005647490.1| - 0.095 12.2 0.4 0.23 11.0 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|385774922|ref|YP_005647490.1| - 0.1 13.4 0.0 0.9 10.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|385774922|ref|YP_005647490.1| - 0.1 11.6 0.0 0.24 10.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin Glyco_tranf_2_3 PF13641.1 gi|385774923|ref|YP_005647491.1| - 6.3e-32 111.2 0.0 1e-31 110.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|385774923|ref|YP_005647491.1| - 3.5e-25 88.8 0.1 3.5e-25 88.8 0.1 1.5 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|385774923|ref|YP_005647491.1| - 6.6e-19 68.2 1.0 9.6e-19 67.6 0.7 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|385774923|ref|YP_005647491.1| - 1.7e-15 56.8 0.3 3.3e-15 55.9 0.2 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|385774923|ref|YP_005647491.1| - 1.9e-15 56.5 0.2 5.5e-15 55.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Cellulose_synt PF03552.9 gi|385774923|ref|YP_005647491.1| - 0.00036 18.9 0.5 0.00069 18.0 0.4 1.4 1 0 0 1 1 1 1 Cellulose synthase DUF356 PF04009.7 gi|385774923|ref|YP_005647491.1| - 0.01 15.8 0.1 0.021 14.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF356) Pyrophosphatase PF00719.14 gi|385774924|ref|YP_005647492.1| - 1.4e-62 209.7 0.2 1.6e-62 209.5 0.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase HD_3 PF13023.1 gi|385774925|ref|YP_005647493.1| - 1.6e-14 53.9 0.0 4.5e-14 52.5 0.0 1.7 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|385774925|ref|YP_005647493.1| - 3e-05 24.0 0.3 0.00059 19.8 0.2 2.3 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|385774925|ref|YP_005647493.1| - 0.012 14.8 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 HDOD domain HD_2 PF12917.2 gi|385774925|ref|YP_005647493.1| - 0.018 14.8 0.0 0.025 14.3 0.0 1.3 1 1 0 1 1 1 0 HD containing hydrolase-like enzyme Phos_pyr_kin PF08543.7 gi|385774926|ref|YP_005647494.1| - 1e-68 231.1 0.3 1.4e-68 230.7 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|385774926|ref|YP_005647494.1| - 1.6e-58 196.8 0.1 2.8e-58 196.0 0.1 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|385774926|ref|YP_005647494.1| - 2e-08 33.7 0.0 3.1e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MoaE PF02391.12 gi|385774927|ref|YP_005647495.1| - 2.4e-16 59.5 0.1 3.6e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|385774927|ref|YP_005647495.1| - 8.3e-13 48.5 0.0 2e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 ThiS family DUF2481 PF10654.4 gi|385774928|ref|YP_005647496.1| - 0.066 12.8 0.7 0.14 11.8 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Fer4_8 PF13183.1 gi|385774929|ref|YP_005647497.1| - 3.4e-09 36.5 4.5 6.5e-09 35.6 3.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385774929|ref|YP_005647497.1| - 8e-07 28.8 5.0 1.6e-06 27.8 3.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385774929|ref|YP_005647497.1| - 2.5e-06 27.8 4.2 0.0022 18.3 0.3 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385774929|ref|YP_005647497.1| - 4.1e-06 27.0 4.2 1.2e-05 25.5 2.9 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385774929|ref|YP_005647497.1| - 4.3e-06 26.9 6.1 8.3e-06 26.0 3.0 2.4 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385774929|ref|YP_005647497.1| - 2.7e-05 23.7 11.4 0.014 15.3 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385774929|ref|YP_005647497.1| - 6.2e-05 22.7 10.4 0.0027 17.4 8.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385774929|ref|YP_005647497.1| - 6.6e-05 23.0 10.1 0.0012 19.0 6.3 3.2 3 1 2 5 5 4 3 4Fe-4S dicluster domain FAD_binding_4 PF01565.18 gi|385774929|ref|YP_005647497.1| - 0.00011 21.7 0.0 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_4 PF12800.2 gi|385774929|ref|YP_005647497.1| - 0.0012 18.9 12.3 0.019 15.2 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385774929|ref|YP_005647497.1| - 0.0014 19.3 2.8 0.28 11.9 0.1 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|385774929|ref|YP_005647497.1| - 0.0017 17.9 17.4 0.0061 16.1 1.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|385774929|ref|YP_005647497.1| - 0.02 14.4 5.9 0.14 11.7 0.1 2.9 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|385774929|ref|YP_005647497.1| - 0.25 11.9 17.7 0.083 13.4 3.7 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385774929|ref|YP_005647497.1| - 1.9 8.4 14.5 0.25 11.2 0.9 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain GHMP_kinases_N PF00288.21 gi|385774930|ref|YP_005647498.1| - 2e-07 30.9 0.7 3.3e-07 30.2 0.5 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF137 PF02006.11 gi|385774931|ref|YP_005647499.1| - 1.3e-77 259.2 3.9 1.6e-77 258.9 2.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 TPP_enzyme_M PF00205.17 gi|385774931|ref|YP_005647499.1| - 0.11 12.2 0.5 4.9 6.9 0.1 2.7 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain Pantoate_transf PF02548.10 gi|385774932|ref|YP_005647500.1| - 9.9e-108 359.1 0.1 1.1e-107 358.9 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|385774932|ref|YP_005647500.1| - 6.7e-07 28.7 0.4 9e-05 21.7 0.0 2.6 1 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase N6-adenineMlase PF10237.4 gi|385774932|ref|YP_005647500.1| - 0.077 12.6 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase ABC_tran PF00005.22 gi|385774934|ref|YP_005647502.1| - 3.8e-25 88.7 0.0 5.8e-25 88.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385774934|ref|YP_005647502.1| - 1.7e-11 44.6 1.3 0.00019 21.5 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|385774934|ref|YP_005647502.1| - 0.00014 22.2 2.6 0.00019 21.8 1.8 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385774934|ref|YP_005647502.1| - 0.00023 20.3 3.4 0.41 9.6 1.9 2.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|385774934|ref|YP_005647502.1| - 0.0055 16.1 0.0 2 7.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|385774934|ref|YP_005647502.1| - 0.007 15.6 2.1 2 7.5 0.1 2.6 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|385774934|ref|YP_005647502.1| - 0.018 15.8 0.3 0.032 15.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|385774934|ref|YP_005647502.1| - 0.022 13.6 0.1 0.04 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|385774934|ref|YP_005647502.1| - 0.023 14.3 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|385774934|ref|YP_005647502.1| - 0.027 14.0 0.1 0.052 13.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|385774934|ref|YP_005647502.1| - 0.044 13.4 0.1 0.091 12.4 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Rad17 PF03215.10 gi|385774934|ref|YP_005647502.1| - 0.06 12.0 0.0 0.066 11.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SRP54 PF00448.17 gi|385774934|ref|YP_005647502.1| - 0.069 12.5 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain BCA_ABC_TP_C PF12399.3 gi|385774934|ref|YP_005647502.1| - 0.076 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter DUF258 PF03193.11 gi|385774934|ref|YP_005647502.1| - 0.1 11.8 0.1 0.17 11.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ArgK PF03308.11 gi|385774934|ref|YP_005647502.1| - 0.12 11.1 0.1 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_22 PF13401.1 gi|385774934|ref|YP_005647502.1| - 0.23 11.5 0.9 1 9.5 0.6 2.0 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|385774935|ref|YP_005647503.1| - 3.3e-17 62.5 41.6 4.4e-17 62.1 28.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|385774935|ref|YP_005647503.1| - 1.9e-14 53.1 24.2 2.8e-14 52.6 16.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|385774935|ref|YP_005647503.1| - 1e-06 28.1 45.0 2.3e-06 26.9 31.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein AsnC_trans_reg PF01037.16 gi|385774936|ref|YP_005647504.1| - 1.7e-11 43.6 0.8 2.1e-11 43.3 0.6 1.1 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|385774936|ref|YP_005647504.1| - 0.011 15.4 0.1 0.014 15.1 0.1 1.3 1 1 0 1 1 1 0 GYD domain Spt5-NGN PF03439.8 gi|385774936|ref|YP_005647504.1| - 0.035 13.8 0.8 0.22 11.2 0.6 1.9 1 1 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section AlkA_N PF06029.6 gi|385774936|ref|YP_005647504.1| - 0.065 13.2 0.0 0.072 13.1 0.0 1.1 1 0 0 1 1 1 0 AlkA N-terminal domain ComJ PF11033.3 gi|385774936|ref|YP_005647504.1| - 0.1 12.2 0.2 1.3 8.6 0.0 1.9 1 1 1 2 2 2 0 Competence protein J (ComJ) ACT_4 PF13291.1 gi|385774936|ref|YP_005647504.1| - 0.11 12.9 0.1 0.15 12.3 0.1 1.4 1 1 0 1 1 1 0 ACT domain ALMT PF11744.3 gi|385774937|ref|YP_005647505.1| - 0.059 12.0 0.4 0.07 11.7 0.3 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter V_ATPase_I PF01496.14 gi|385774937|ref|YP_005647505.1| - 0.83 7.4 5.3 0.87 7.3 3.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|385774937|ref|YP_005647505.1| - 1.5 8.4 7.2 1.6 8.2 5.0 1.2 1 0 0 1 1 1 0 IncA protein RHH_1 PF01402.16 gi|385774938|ref|YP_005647506.1| - 7.1e-11 41.5 0.4 1.2e-10 40.8 0.2 1.5 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|385774938|ref|YP_005647506.1| - 0.00025 20.7 0.5 0.00039 20.0 0.2 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix domain Lactamase_B_3 PF13483.1 gi|385774939|ref|YP_005647507.1| - 2e-31 108.8 0.2 2.7e-31 108.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|385774939|ref|YP_005647507.1| - 2.9e-15 56.3 1.7 1.4e-12 47.6 1.2 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385774939|ref|YP_005647507.1| - 0.00067 19.3 5.3 0.01 15.4 3.2 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily HMGL-like PF00682.14 gi|385774940|ref|YP_005647508.1| - 7.2e-70 235.3 1.0 9.3e-70 234.9 0.7 1.1 1 0 0 1 1 1 1 HMGL-like MAF_flag10 PF01973.13 gi|385774941|ref|YP_005647509.1| - 4.6e-29 101.0 0.1 6.2e-29 100.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|385774941|ref|YP_005647509.1| - 0.0029 17.1 0.0 0.0051 16.3 0.0 1.4 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain HEPN PF05168.9 gi|385774943|ref|YP_005647511.1| - 5.8e-05 22.9 1.3 0.00013 21.8 0.9 1.6 1 1 0 1 1 1 1 HEPN domain HGTP_anticodon PF03129.15 gi|385774943|ref|YP_005647511.1| - 0.072 13.0 0.1 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Anticodon binding domain DUF61 PF01886.11 gi|385774943|ref|YP_005647511.1| - 0.14 12.0 2.8 0.71 9.7 1.5 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF61 p31comet PF06581.7 gi|385774943|ref|YP_005647511.1| - 0.15 10.8 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Mad1 and Cdc20-bound-Mad2 binding hGDE_central PF14702.1 gi|385774945|ref|YP_005647513.1| - 0.048 12.8 0.4 0.055 12.6 0.3 1.1 1 0 0 1 1 1 0 central domain of human glycogen debranching enzyme PTPS PF01242.14 gi|385774946|ref|YP_005647514.1| - 1.4e-22 79.6 0.0 1.7e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase GPW_gp25 PF04965.9 gi|385774946|ref|YP_005647514.1| - 0.13 11.7 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Gene 25-like lysozyme DUF512 PF04459.7 gi|385774948|ref|YP_005647516.1| - 1e-05 24.7 0.3 2.3e-05 23.5 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF512) DUF4346 PF14251.1 gi|385774948|ref|YP_005647516.1| - 7.7e-05 22.4 0.0 0.00019 21.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Flavoprotein PF02441.14 gi|385774948|ref|YP_005647516.1| - 0.017 14.7 0.1 0.97 9.1 0.0 2.6 2 1 0 2 2 2 0 Flavoprotein Pyr_redox_2 PF07992.9 gi|385774949|ref|YP_005647517.1| - 2.5e-31 109.1 1.6 3.3e-31 108.7 1.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385774949|ref|YP_005647517.1| - 7.2e-14 51.9 0.7 7.2e-14 51.9 0.5 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385774949|ref|YP_005647517.1| - 1.2e-13 51.5 0.0 2.7e-13 50.4 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|385774949|ref|YP_005647517.1| - 3.4e-07 29.4 0.2 0.0064 15.4 0.0 3.1 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|385774949|ref|YP_005647517.1| - 3.2e-05 22.5 1.9 0.02 13.3 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|385774949|ref|YP_005647517.1| - 0.00018 20.6 0.1 0.012 14.6 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385774949|ref|YP_005647517.1| - 0.00054 18.9 1.1 1.9 7.2 0.0 3.2 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|385774949|ref|YP_005647517.1| - 0.0011 17.9 7.7 0.79 8.5 0.0 4.2 3 2 1 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|385774949|ref|YP_005647517.1| - 0.0018 17.3 7.1 0.07 12.2 0.2 3.1 3 1 0 3 3 3 2 Thi4 family NAD_binding_7 PF13241.1 gi|385774949|ref|YP_005647517.1| - 0.0057 16.8 1.2 0.25 11.6 0.2 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|385774949|ref|YP_005647517.1| - 0.039 12.8 0.3 14 4.5 0.1 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein DAO PF01266.19 gi|385774949|ref|YP_005647517.1| - 0.043 12.7 3.5 0.38 9.6 0.1 2.8 1 1 1 2 2 2 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|385774949|ref|YP_005647517.1| - 0.077 12.7 0.1 0.95 9.2 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|385774949|ref|YP_005647517.1| - 0.2 11.7 1.3 1.3 9.1 0.0 2.6 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Inositol_P PF00459.20 gi|385774950|ref|YP_005647518.1| - 2.1e-21 76.4 0.0 2.3e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|385774950|ref|YP_005647518.1| - 0.00011 21.1 0.0 0.00016 20.6 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase AAA PF00004.24 gi|385774951|ref|YP_005647519.1| - 1.6e-83 277.4 0.0 7.2e-41 139.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|385774951|ref|YP_005647519.1| - 1.9e-15 57.1 0.0 3.5e-07 30.2 0.0 3.6 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|385774951|ref|YP_005647519.1| - 3.1e-15 57.0 0.2 9.9e-07 29.6 0.1 3.4 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|385774951|ref|YP_005647519.1| - 9.1e-15 54.6 2.1 1.7e-07 31.1 0.0 3.3 4 0 0 4 4 3 2 AAA domain AAA_5 PF07728.9 gi|385774951|ref|YP_005647519.1| - 3.7e-13 49.3 0.4 5.9e-05 22.8 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|385774951|ref|YP_005647519.1| - 5.9e-13 49.1 1.5 0.0011 19.0 0.0 4.7 3 2 1 4 4 3 2 AAA domain RuvB_N PF05496.7 gi|385774951|ref|YP_005647519.1| - 3.3e-12 45.9 0.2 6.2e-06 25.4 0.1 2.8 3 1 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|385774951|ref|YP_005647519.1| - 4.6e-10 39.7 0.0 0.00049 20.1 0.0 3.6 3 2 1 4 4 3 2 AAA ATPase domain RNA_helicase PF00910.17 gi|385774951|ref|YP_005647519.1| - 2e-09 37.5 0.0 0.00038 20.5 0.0 3.0 2 1 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|385774951|ref|YP_005647519.1| - 1.2e-08 35.2 0.1 0.00052 20.3 0.1 3.1 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|385774951|ref|YP_005647519.1| - 8.1e-08 31.8 1.7 0.15 11.4 0.1 3.4 2 1 1 3 3 3 3 AAA domain IstB_IS21 PF01695.12 gi|385774951|ref|YP_005647519.1| - 1.1e-07 31.4 0.0 0.0064 15.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.1 gi|385774951|ref|YP_005647519.1| - 1.3e-07 31.5 0.0 0.024 14.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|385774951|ref|YP_005647519.1| - 1.4e-07 30.8 2.7 0.0028 16.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|385774951|ref|YP_005647519.1| - 1.7e-07 31.3 0.0 0.013 15.5 0.0 2.8 3 0 0 3 3 2 2 AAA domain Zeta_toxin PF06414.7 gi|385774951|ref|YP_005647519.1| - 1.7e-07 30.5 0.1 0.012 14.7 0.0 3.4 3 0 0 3 3 3 2 Zeta toxin NACHT PF05729.7 gi|385774951|ref|YP_005647519.1| - 2.4e-07 30.5 0.2 0.088 12.4 0.0 3.8 2 2 2 4 4 4 2 NACHT domain Arch_ATPase PF01637.13 gi|385774951|ref|YP_005647519.1| - 2.9e-07 30.4 4.1 0.093 12.4 0.0 5.0 3 2 2 5 5 5 2 Archaeal ATPase DUF815 PF05673.8 gi|385774951|ref|YP_005647519.1| - 6.6e-07 28.5 0.5 0.089 11.6 0.0 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|385774951|ref|YP_005647519.1| - 1.8e-06 26.9 0.0 0.0047 15.6 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_3 PF07726.6 gi|385774951|ref|YP_005647519.1| - 2.9e-06 26.8 0.0 0.029 13.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|385774951|ref|YP_005647519.1| - 1.4e-05 24.0 0.1 0.1 11.2 0.0 2.5 2 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein ABC_tran PF00005.22 gi|385774951|ref|YP_005647519.1| - 3.7e-05 24.0 0.1 0.18 12.1 0.0 2.9 2 1 0 2 2 2 2 ABC transporter Vps4_C PF09336.5 gi|385774951|ref|YP_005647519.1| - 4.1e-05 23.3 0.7 0.016 15.0 0.0 3.1 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.1 gi|385774951|ref|YP_005647519.1| - 4.3e-05 23.2 9.4 0.0014 18.3 0.3 3.5 5 0 0 5 5 3 2 AAA domain AFG1_ATPase PF03969.11 gi|385774951|ref|YP_005647519.1| - 7.9e-05 21.6 0.4 0.33 9.7 0.1 2.8 3 1 0 3 3 2 2 AFG1-like ATPase Sigma54_activ_2 PF14532.1 gi|385774951|ref|YP_005647519.1| - 9.4e-05 22.4 0.0 0.21 11.6 0.0 3.0 2 0 0 2 2 2 1 Sigma-54 interaction domain KTI12 PF08433.5 gi|385774951|ref|YP_005647519.1| - 0.00011 21.5 0.1 0.033 13.4 0.0 3.3 3 0 0 3 3 3 1 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|385774951|ref|YP_005647519.1| - 0.00016 21.3 0.0 0.35 10.6 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain Bac_DnaA PF00308.13 gi|385774951|ref|YP_005647519.1| - 0.00018 21.2 0.0 0.68 9.5 0.0 3.2 2 2 0 2 2 2 2 Bacterial dnaA protein MMR_HSR1 PF01926.18 gi|385774951|ref|YP_005647519.1| - 0.00025 21.0 0.5 0.44 10.5 0.0 4.1 4 1 1 5 5 3 1 50S ribosome-binding GTPase UPF0079 PF02367.12 gi|385774951|ref|YP_005647519.1| - 0.00027 20.5 0.1 0.32 10.6 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Guanylate_kin PF00625.16 gi|385774951|ref|YP_005647519.1| - 0.00035 20.0 0.1 2.1 7.7 0.0 3.5 3 1 1 4 4 3 2 Guanylate kinase Parvo_NS1 PF01057.12 gi|385774951|ref|YP_005647519.1| - 0.00059 18.7 0.0 0.17 10.7 0.0 2.3 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|385774951|ref|YP_005647519.1| - 0.00062 19.2 0.0 2 7.8 0.0 3.2 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_30 PF13604.1 gi|385774951|ref|YP_005647519.1| - 0.00074 19.1 0.2 1.4 8.4 0.0 2.6 2 1 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|385774951|ref|YP_005647519.1| - 0.001 18.6 0.0 0.45 9.9 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.17 gi|385774951|ref|YP_005647519.1| - 0.0012 18.7 0.0 0.34 10.7 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase ResIII PF04851.10 gi|385774951|ref|YP_005647519.1| - 0.0012 18.6 0.2 0.63 9.8 0.0 3.0 2 2 1 3 3 2 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|385774951|ref|YP_005647519.1| - 0.0014 18.2 0.0 0.075 12.5 0.0 2.6 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.17 gi|385774951|ref|YP_005647519.1| - 0.0016 17.3 0.1 1.1 8.0 0.0 2.7 3 0 0 3 3 2 1 NB-ARC domain AAA_11 PF13086.1 gi|385774951|ref|YP_005647519.1| - 0.003 17.1 0.0 1.4 8.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|385774951|ref|YP_005647519.1| - 0.0034 16.5 0.7 2.8 7.0 0.0 3.1 3 1 0 3 3 3 0 KaiC AAA_10 PF12846.2 gi|385774951|ref|YP_005647519.1| - 0.0034 16.8 5.2 0.63 9.4 0.1 4.0 3 2 1 4 4 4 1 AAA-like domain AAA_29 PF13555.1 gi|385774951|ref|YP_005647519.1| - 0.0069 15.9 0.0 2.8 7.5 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain KAP_NTPase PF07693.9 gi|385774951|ref|YP_005647519.1| - 0.0091 15.0 0.2 2.6 6.9 0.0 3.3 3 1 1 4 4 4 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|385774951|ref|YP_005647519.1| - 0.012 15.3 0.0 0.69 9.6 0.0 2.6 2 0 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|385774951|ref|YP_005647519.1| - 0.017 14.2 0.0 5.2 6.2 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 PhoH PF02562.11 gi|385774951|ref|YP_005647519.1| - 0.024 13.8 0.7 6.4 5.9 0.2 3.1 2 1 0 2 2 2 0 PhoH-like protein T2SE PF00437.15 gi|385774951|ref|YP_005647519.1| - 0.033 13.1 0.0 2.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein PPV_E1_C PF00519.12 gi|385774951|ref|YP_005647519.1| - 0.034 12.7 0.0 0.51 8.9 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase PduV-EutP PF10662.4 gi|385774951|ref|YP_005647519.1| - 0.041 13.3 0.1 2.2 7.7 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|385774951|ref|YP_005647519.1| - 0.043 13.2 0.3 4.1 6.8 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IPT PF01745.11 gi|385774951|ref|YP_005647519.1| - 0.058 12.5 0.0 1.7 7.7 0.0 2.6 2 0 0 2 2 2 0 Isopentenyl transferase FtsK_SpoIIIE PF01580.13 gi|385774951|ref|YP_005647519.1| - 0.085 12.3 0.3 4.3 6.7 0.0 2.9 2 1 1 3 3 3 0 FtsK/SpoIIIE family Glutaredoxin PF00462.19 gi|385774951|ref|YP_005647519.1| - 0.099 12.6 0.0 1.6 8.7 0.0 2.9 3 0 0 3 3 2 0 Glutaredoxin ATP_bind_1 PF03029.12 gi|385774951|ref|YP_005647519.1| - 0.12 11.8 0.1 20 4.6 0.0 2.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.17 gi|385774951|ref|YP_005647519.1| - 0.21 11.0 3.5 16 4.8 0.1 3.6 3 1 0 4 4 4 0 SRP54-type protein, GTPase domain DAO PF01266.19 gi|385774952|ref|YP_005647520.1| - 7.8e-20 71.0 0.0 5e-10 38.8 0.0 2.9 2 1 0 2 2 2 2 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|385774952|ref|YP_005647520.1| - 2.8e-12 46.4 0.3 1.8e-09 37.2 0.0 2.6 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|385774952|ref|YP_005647520.1| - 2.8e-11 43.2 0.2 9.2e-11 41.6 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|385774952|ref|YP_005647520.1| - 1.8e-08 33.6 3.7 0.00034 19.5 1.7 2.8 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|385774952|ref|YP_005647520.1| - 1.5e-07 30.7 2.5 6.9e-07 28.6 0.6 2.3 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|385774952|ref|YP_005647520.1| - 9.3e-07 29.1 5.4 0.00028 21.2 0.4 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385774952|ref|YP_005647520.1| - 1.2e-06 28.6 0.1 1e-05 25.4 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385774952|ref|YP_005647520.1| - 1.2e-05 23.9 3.6 0.0021 16.6 1.0 2.6 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|385774952|ref|YP_005647520.1| - 1.8e-05 23.9 0.3 0.00028 20.1 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|385774952|ref|YP_005647520.1| - 6.7e-05 22.0 0.6 0.00021 20.4 0.3 1.8 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|385774952|ref|YP_005647520.1| - 0.00051 18.8 1.8 0.043 12.4 0.5 2.3 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|385774952|ref|YP_005647520.1| - 0.0008 19.5 0.2 0.008 16.2 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|385774952|ref|YP_005647520.1| - 0.00082 18.3 12.9 0.0027 16.6 0.8 2.8 2 1 1 3 3 3 2 Glucose inhibited division protein A GDI PF00996.13 gi|385774952|ref|YP_005647520.1| - 0.0016 16.8 0.1 0.082 11.2 0.0 2.2 2 0 0 2 2 2 1 GDP dissociation inhibitor UDPG_MGDP_dh_N PF03721.9 gi|385774952|ref|YP_005647520.1| - 0.0064 15.8 0.2 0.013 14.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|385774952|ref|YP_005647520.1| - 0.03 14.1 0.0 0.067 12.9 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|385774952|ref|YP_005647520.1| - 0.13 11.9 0.2 0.27 10.9 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|385774952|ref|YP_005647520.1| - 0.14 11.8 0.9 0.28 10.7 0.6 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|385774952|ref|YP_005647520.1| - 0.25 10.2 4.9 0.38 9.6 0.3 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein Phosphodiest PF01663.17 gi|385774953|ref|YP_005647521.1| - 5.5e-17 62.1 1.7 6.2e-16 58.6 1.2 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|385774953|ref|YP_005647521.1| - 0.0018 17.6 0.0 0.0037 16.6 0.0 1.4 1 0 0 1 1 1 1 Metalloenzyme superfamily Pam17 PF08566.5 gi|385774953|ref|YP_005647521.1| - 0.14 11.8 0.3 0.34 10.5 0.1 1.7 1 1 0 1 1 1 0 Mitochondrial import protein Pam17 Pribosyltran PF00156.22 gi|385774954|ref|YP_005647522.1| - 3.6e-19 68.7 0.3 4.8e-19 68.3 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_3 PF15610.1 gi|385774954|ref|YP_005647522.1| - 0.072 11.9 0.0 0.093 11.6 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like MM_CoA_mutase PF01642.17 gi|385774955|ref|YP_005647523.1| - 1.7e-195 650.1 0.0 1.9e-195 649.9 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase RE_AccI PF09545.5 gi|385774955|ref|YP_005647523.1| - 0.031 12.8 0.0 0.052 12.0 0.0 1.3 1 0 0 1 1 1 0 AccI restriction endonuclease Glyoxalase_4 PF13669.1 gi|385774956|ref|YP_005647524.1| - 1.6e-25 89.1 0.0 2.1e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.20 gi|385774956|ref|YP_005647524.1| - 3.2e-13 49.7 0.0 3.7e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|385774956|ref|YP_005647524.1| - 2.7e-10 40.4 0.0 3.7e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|385774956|ref|YP_005647524.1| - 1.6e-09 38.3 0.0 1.9e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Osmo_CC PF08946.5 gi|385774956|ref|YP_005647524.1| - 0.0002 21.3 1.5 0.35 10.9 0.0 2.5 2 0 0 2 2 2 2 Osmosensory transporter coiled coil DUF2202 PF09968.4 gi|385774956|ref|YP_005647524.1| - 0.0062 16.2 0.0 0.03 13.9 0.0 2.0 1 1 0 2 2 2 1 Uncharacterized protein domain (DUF2202) CppA_N PF14506.1 gi|385774956|ref|YP_005647524.1| - 0.0087 15.7 0.1 0.053 13.2 0.1 2.0 1 1 0 1 1 1 1 CppA N-terminal Gp-FAR-1 PF05823.7 gi|385774956|ref|YP_005647524.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HSP20 PF00011.16 gi|385774957|ref|YP_005647525.1| - 1.3e-11 44.2 4.0 1.3e-11 44.2 2.8 2.5 2 1 0 2 2 2 1 Hsp20/alpha crystallin family CS PF04969.11 gi|385774957|ref|YP_005647525.1| - 1.2e-06 28.9 2.3 1.8e-06 28.3 1.6 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|385774957|ref|YP_005647525.1| - 0.0028 17.3 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|385774957|ref|YP_005647525.1| - 0.021 14.2 0.1 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 zf-ZPR1 PF03367.8 gi|385774958|ref|YP_005647526.1| - 2.2e-31 108.2 0.1 9.2e-30 102.9 0.0 2.0 1 1 0 1 1 1 1 ZPR1 zinc-finger domain Mob_synth_C PF06463.8 gi|385774958|ref|YP_005647526.1| - 0.0023 17.6 0.2 0.0045 16.6 0.0 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Lar_restr_allev PF14354.1 gi|385774958|ref|YP_005647526.1| - 0.014 15.7 0.1 0.024 14.9 0.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|385774958|ref|YP_005647526.1| - 0.079 12.7 0.7 0.28 11.0 0.5 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|385774958|ref|YP_005647526.1| - 0.086 12.9 1.0 0.43 10.6 0.7 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-DBF PF07535.7 gi|385774958|ref|YP_005647526.1| - 0.13 11.9 1.0 0.86 9.3 0.7 2.1 2 0 0 2 2 2 0 DBF zinc finger Rubredoxin PF00301.15 gi|385774958|ref|YP_005647526.1| - 0.14 12.0 1.5 14 5.6 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|385774958|ref|YP_005647526.1| - 0.14 12.1 3.7 5 7.1 0.0 2.5 3 0 0 3 3 2 0 Zinc ribbon domain DUF2225 PF09986.4 gi|385774958|ref|YP_005647526.1| - 0.14 11.5 0.6 5.4 6.4 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-C2H2_4 PF13894.1 gi|385774958|ref|YP_005647526.1| - 1.7 9.1 4.3 13 6.4 0.1 2.6 3 0 0 3 3 3 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|385774958|ref|YP_005647526.1| - 1.7 7.9 7.4 3.2 7.1 2.8 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|385774958|ref|YP_005647526.1| - 2.6 8.4 7.2 11 6.5 0.0 2.9 3 0 0 3 3 3 0 Zinc-finger double domain Cys_rich_KTR PF14205.1 gi|385774958|ref|YP_005647526.1| - 6.2 6.3 6.7 2.1 7.8 2.2 2.1 2 1 0 2 2 2 0 Cysteine-rich KTR zf-C2H2 PF00096.21 gi|385774958|ref|YP_005647526.1| - 8.6 6.9 8.9 9.6 6.7 0.3 2.6 3 0 0 3 3 2 0 Zinc finger, C2H2 type GTP_EFTU PF00009.22 gi|385774959|ref|YP_005647527.1| - 3.1e-23 82.1 0.0 5.6e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|385774959|ref|YP_005647527.1| - 1.5e-15 57.1 0.1 2.1e-14 53.4 0.1 2.5 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|385774959|ref|YP_005647527.1| - 5.6e-09 35.9 3.9 9.3e-08 32.0 0.8 3.1 3 0 0 3 3 3 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|385774959|ref|YP_005647527.1| - 0.0011 18.5 0.2 3.5 7.0 0.0 3.4 2 1 1 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|385774959|ref|YP_005647527.1| - 0.0051 16.7 2.5 0.0064 16.4 0.4 2.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase DUF473 PF04322.7 gi|385774959|ref|YP_005647527.1| - 0.048 13.2 0.1 0.21 11.2 0.0 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF473) AAA_4 PF04326.9 gi|385774959|ref|YP_005647527.1| - 0.071 13.2 0.1 0.071 13.2 0.0 3.0 5 0 0 5 5 5 0 Divergent AAA domain COXG PF06240.8 gi|385774960|ref|YP_005647528.1| - 3.6e-18 65.5 0.2 4.3e-18 65.3 0.1 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF3211 PF11485.3 gi|385774960|ref|YP_005647528.1| - 0.0018 18.3 0.1 0.0021 18.1 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3211) COXG PF06240.8 gi|385774961|ref|YP_005647529.1| - 3.1e-43 146.7 0.8 3.4e-43 146.6 0.6 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF3211 PF11485.3 gi|385774961|ref|YP_005647529.1| - 0.0048 16.9 0.0 0.01 15.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3211) Polyketide_cyc2 PF10604.4 gi|385774961|ref|YP_005647529.1| - 0.043 13.9 0.0 0.05 13.7 0.0 1.1 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport NTP_transf_3 PF12804.2 gi|385774962|ref|YP_005647530.1| - 3.8e-34 118.0 0.0 4.4e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385774962|ref|YP_005647530.1| - 2.1e-08 33.9 0.0 3.1e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.11 gi|385774962|ref|YP_005647530.1| - 0.014 14.3 0.2 0.021 13.7 0.2 1.4 1 1 0 1 1 1 0 Guanylyl transferase CofC like Fer2_2 PF01799.15 gi|385774963|ref|YP_005647531.1| - 4.6e-37 125.7 0.5 1.6e-36 124.0 0.0 1.9 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|385774963|ref|YP_005647531.1| - 3.6e-07 29.8 0.7 3.6e-07 29.8 0.5 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|385774963|ref|YP_005647531.1| - 0.00075 19.3 0.9 0.0017 18.1 0.6 1.7 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|385774963|ref|YP_005647531.1| - 0.073 12.8 1.9 1.9 8.3 1.3 2.3 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.16 gi|385774964|ref|YP_005647532.1| - 1.6e-49 167.5 0.0 2.3e-49 167.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|385774964|ref|YP_005647532.1| - 3.4e-27 94.3 1.5 5.5e-27 93.7 1.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain FAD_binding_4 PF01565.18 gi|385774964|ref|YP_005647532.1| - 0.017 14.5 0.0 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain YHS PF04945.8 gi|385774965|ref|YP_005647533.1| - 7.5e-10 38.5 3.6 7.7e-10 38.4 2.5 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|385774965|ref|YP_005647533.1| - 1e-09 38.3 3.6 1.2e-09 38.1 2.5 1.1 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|385774965|ref|YP_005647533.1| - 3e-09 36.3 3.4 3.7e-09 36.0 2.4 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ta0938 PF11494.3 gi|385774965|ref|YP_005647533.1| - 0.016 15.2 0.2 0.016 15.2 0.1 1.1 1 0 0 1 1 1 0 Ta0938 DUF2175 PF09943.4 gi|385774965|ref|YP_005647533.1| - 0.029 14.4 1.1 0.029 14.4 0.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) Phage_hub_GP28 PF11110.3 gi|385774965|ref|YP_005647533.1| - 0.057 13.0 0.0 0.057 13.0 0.0 1.1 1 0 0 1 1 1 0 Baseplate hub distal subunit DUF2116 PF09889.4 gi|385774965|ref|YP_005647533.1| - 0.058 13.2 3.3 0.49 10.2 2.3 2.0 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) ATPase-cat_bd PF12156.3 gi|385774965|ref|YP_005647533.1| - 0.091 13.3 0.4 0.099 13.1 0.3 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase DUF581 PF04570.9 gi|385774965|ref|YP_005647533.1| - 0.15 11.3 3.6 0.17 11.2 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF581) C1_3 PF07649.7 gi|385774965|ref|YP_005647533.1| - 0.44 10.6 7.2 15 5.6 5.0 2.2 1 1 0 1 1 1 0 C1-like domain Zn_ribbon_recom PF13408.1 gi|385774965|ref|YP_005647533.1| - 0.78 10.0 4.5 0.88 9.8 3.1 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-BED PF02892.10 gi|385774965|ref|YP_005647533.1| - 1.3 8.8 3.6 0.45 10.3 1.0 1.5 2 0 0 2 2 2 0 BED zinc finger TP_methylase PF00590.15 gi|385774966|ref|YP_005647534.1| - 8.3e-47 159.5 0.1 9.6e-47 159.4 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1404 PF07185.6 gi|385774967|ref|YP_005647535.1| - 7.8e-07 28.8 9.2 7.8e-07 28.8 6.3 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1404) Sigma70_r1_1 PF03979.9 gi|385774968|ref|YP_005647536.1| - 0.055 13.3 0.3 0.077 12.9 0.2 1.2 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 SIS PF01380.17 gi|385774969|ref|YP_005647537.1| - 1.2e-12 47.5 0.3 9e-06 25.3 0.1 3.0 2 1 0 2 2 2 2 SIS domain Amidohydro_5 PF13594.1 gi|385774970|ref|YP_005647538.1| - 4e-07 29.7 0.0 7.8e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|385774970|ref|YP_005647538.1| - 5.5e-06 26.2 0.0 0.0073 15.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.6 gi|385774970|ref|YP_005647538.1| - 0.00084 18.6 0.0 0.0025 17.1 0.0 1.7 2 0 0 2 2 2 1 Amidohydrolase family Met_10 PF02475.11 gi|385774971|ref|YP_005647539.1| - 9.7e-47 159.1 0.0 1.2e-46 158.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|385774971|ref|YP_005647539.1| - 0.013 14.5 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Gln-synt_C PF00120.19 gi|385774972|ref|YP_005647540.1| - 3.6e-63 213.1 0.0 4.7e-63 212.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|385774972|ref|YP_005647540.1| - 0.0059 16.1 0.0 1.8 8.2 0.0 2.5 2 0 0 2 2 2 2 Glutamine synthetase, beta-Grasp domain ADH_N PF08240.7 gi|385774973|ref|YP_005647541.1| - 3.3e-30 104.0 1.2 6e-30 103.2 0.8 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385774973|ref|YP_005647541.1| - 2e-19 69.3 0.0 3.7e-19 68.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385774973|ref|YP_005647541.1| - 1.6e-11 45.2 0.0 3.3e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_7 PF13241.1 gi|385774973|ref|YP_005647541.1| - 0.0012 19.0 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|385774973|ref|YP_005647541.1| - 0.005 16.4 0.1 0.008 15.7 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|385774973|ref|YP_005647541.1| - 0.011 15.8 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Melittin PF01372.12 gi|385774973|ref|YP_005647541.1| - 0.028 13.7 0.2 0.07 12.5 0.1 1.7 1 0 0 1 1 1 0 Melittin ApbA PF02558.11 gi|385774973|ref|YP_005647541.1| - 0.042 13.3 0.2 0.068 12.6 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|385774973|ref|YP_005647541.1| - 0.054 13.5 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 NADH(P)-binding Pyr_redox_3 PF13738.1 gi|385774973|ref|YP_005647541.1| - 0.075 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ELFV_dehydrog PF00208.16 gi|385774973|ref|YP_005647541.1| - 0.092 12.3 0.4 0.13 11.7 0.3 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Ribosomal_L13e PF01294.13 gi|385774974|ref|YP_005647542.1| - 1.3e-09 37.7 0.1 1.3e-09 37.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e RTC PF01137.16 gi|385774975|ref|YP_005647543.1| - 1.7e-83 278.9 0.0 3.2e-83 278.0 0.0 1.4 1 1 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|385774975|ref|YP_005647543.1| - 1.6e-25 89.1 0.6 2.9e-25 88.2 0.4 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain IMS PF00817.15 gi|385774977|ref|YP_005647545.1| - 2.9e-45 153.7 0.5 6.8e-45 152.5 0.1 1.8 2 0 0 2 2 2 1 impB/mucB/samB family IMS_C PF11799.3 gi|385774977|ref|YP_005647545.1| - 9.6e-12 44.9 0.3 3.2e-11 43.2 0.1 1.9 3 0 0 3 3 3 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|385774977|ref|YP_005647545.1| - 1.7e-07 30.9 1.5 4.4e-07 29.5 0.2 2.3 2 0 0 2 2 2 1 IMS family HHH motif HHH_5 PF14520.1 gi|385774977|ref|YP_005647545.1| - 0.0016 18.5 1.2 0.0052 16.9 0.8 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain Ribosomal_L18p PF00861.17 gi|385774977|ref|YP_005647545.1| - 0.0026 17.9 0.2 0.038 14.1 0.0 2.7 3 0 0 3 3 3 1 Ribosomal L18p/L5e family HHH PF00633.18 gi|385774977|ref|YP_005647545.1| - 0.033 13.9 0.1 0.25 11.1 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif Mt_ATP-synt_D PF05873.7 gi|385774977|ref|YP_005647545.1| - 0.09 12.4 2.0 0.51 9.9 0.0 2.3 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Spore_YhcN_YlaJ PF09580.5 gi|385774977|ref|YP_005647545.1| - 0.1 12.6 0.3 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Cdd1 PF11731.3 gi|385774977|ref|YP_005647545.1| - 0.14 12.0 0.0 0.46 10.4 0.0 2.0 2 0 0 2 2 2 0 Pathogenicity locus PfkB PF00294.19 gi|385774978|ref|YP_005647546.1| - 5e-36 124.3 0.1 3.5e-35 121.6 0.0 1.9 1 1 0 1 1 1 1 pfkB family carbohydrate kinase TIP49 PF06068.8 gi|385774979|ref|YP_005647547.1| - 5.1e-154 512.7 3.4 6.2e-154 512.5 2.4 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|385774979|ref|YP_005647547.1| - 4.2e-11 43.1 0.4 2.7e-08 34.0 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|385774979|ref|YP_005647547.1| - 8.3e-11 41.3 0.7 3e-07 29.7 0.1 3.3 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|385774979|ref|YP_005647547.1| - 3.5e-08 33.6 1.1 0.0041 17.2 0.1 2.7 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385774979|ref|YP_005647547.1| - 7e-07 29.4 1.7 4.2e-05 23.6 1.2 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|385774979|ref|YP_005647547.1| - 1.4e-05 25.9 0.7 0.00071 20.3 0.0 2.8 1 1 1 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|385774979|ref|YP_005647547.1| - 4.1e-05 22.8 0.5 0.00033 19.8 0.1 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|385774979|ref|YP_005647547.1| - 0.00011 21.7 0.2 0.0054 16.2 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|385774979|ref|YP_005647547.1| - 0.00018 21.1 0.1 0.00052 19.7 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|385774979|ref|YP_005647547.1| - 0.00019 20.8 0.1 0.00057 19.3 0.1 1.8 2 1 0 2 2 2 1 AAA domain DnaB_C PF03796.10 gi|385774979|ref|YP_005647547.1| - 0.00025 20.0 0.1 0.001 17.9 0.0 1.9 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|385774979|ref|YP_005647547.1| - 0.00027 20.4 0.1 0.00077 18.9 0.1 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|385774979|ref|YP_005647547.1| - 0.00028 21.2 0.2 0.0016 18.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|385774979|ref|YP_005647547.1| - 0.00043 20.5 0.2 0.00083 19.6 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.1 gi|385774979|ref|YP_005647547.1| - 0.00056 19.7 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|385774979|ref|YP_005647547.1| - 0.00067 19.3 0.1 0.0038 16.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|385774979|ref|YP_005647547.1| - 0.00089 19.2 0.1 0.0047 16.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) PhoH PF02562.11 gi|385774979|ref|YP_005647547.1| - 0.0073 15.5 0.1 0.015 14.5 0.1 1.5 1 0 0 1 1 1 1 PhoH-like protein Zeta_toxin PF06414.7 gi|385774979|ref|YP_005647547.1| - 0.0078 15.3 0.1 0.016 14.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin PepSY PF03413.14 gi|385774979|ref|YP_005647547.1| - 0.0093 16.5 0.1 3.3 8.4 0.0 3.1 2 1 0 2 2 2 1 Peptidase propeptide and YPEB domain RNA_helicase PF00910.17 gi|385774979|ref|YP_005647547.1| - 0.012 15.8 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|385774979|ref|YP_005647547.1| - 0.02 14.8 0.2 0.054 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|385774979|ref|YP_005647547.1| - 0.024 14.2 0.0 0.055 13.1 0.0 1.7 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.4 gi|385774979|ref|YP_005647547.1| - 0.025 13.5 0.1 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.12 gi|385774979|ref|YP_005647547.1| - 0.035 12.9 0.0 0.061 12.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|385774979|ref|YP_005647547.1| - 0.048 13.2 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385774979|ref|YP_005647547.1| - 0.069 13.0 0.1 1.4 8.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|385774979|ref|YP_005647547.1| - 0.075 12.8 0.2 0.4 10.4 0.1 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit GATase PF00117.23 gi|385774980|ref|YP_005647548.1| - 2.2e-36 125.0 0.0 2.5e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385774980|ref|YP_005647548.1| - 2.9e-12 46.4 0.1 2.6e-11 43.3 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|385774980|ref|YP_005647548.1| - 0.0021 17.7 0.0 0.06 12.9 0.0 2.1 1 1 0 1 1 1 1 SNO glutamine amidotransferase family HTS PF04204.11 gi|385774980|ref|YP_005647548.1| - 0.012 14.3 0.0 0.018 13.7 0.0 1.3 1 1 0 1 1 1 0 Homoserine O-succinyltransferase PI3K_C2 PF00792.19 gi|385774980|ref|YP_005647548.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoinositide 3-kinase C2 KaiC PF06745.8 gi|385774981|ref|YP_005647549.1| - 9.8e-59 198.2 0.2 1.1e-58 197.9 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|385774981|ref|YP_005647549.1| - 7e-11 41.8 0.0 1e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|385774981|ref|YP_005647549.1| - 1.8e-06 27.2 0.0 4e-06 26.1 0.0 1.6 2 0 0 2 2 2 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|385774981|ref|YP_005647549.1| - 1.8e-06 26.6 0.2 7.5e-06 24.5 0.1 2.1 1 1 1 2 2 2 1 GvpD gas vesicle protein AAA_14 PF13173.1 gi|385774981|ref|YP_005647549.1| - 1.6e-05 24.7 0.2 0.003 17.4 0.0 2.3 1 1 1 2 2 2 1 AAA domain MEDS PF14417.1 gi|385774981|ref|YP_005647549.1| - 1.7e-05 23.9 0.0 2.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_19 PF13245.1 gi|385774981|ref|YP_005647549.1| - 5.3e-05 22.8 0.0 0.0007 19.3 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain IstB_IS21 PF01695.12 gi|385774981|ref|YP_005647549.1| - 5.4e-05 22.6 0.0 0.00032 20.1 0.0 1.9 1 1 1 2 2 2 1 IstB-like ATP binding protein Rad51 PF08423.6 gi|385774981|ref|YP_005647549.1| - 0.00029 19.8 0.0 0.00048 19.1 0.0 1.5 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.1 gi|385774981|ref|YP_005647549.1| - 0.0014 18.8 0.0 0.0031 17.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|385774981|ref|YP_005647549.1| - 0.0031 16.4 0.0 0.0053 15.6 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RNA_helicase PF00910.17 gi|385774981|ref|YP_005647549.1| - 0.0098 16.0 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 RNA helicase PAXNEB PF05625.6 gi|385774981|ref|YP_005647549.1| - 0.028 13.2 0.1 0.066 12.0 0.0 1.6 2 0 0 2 2 2 0 PAXNEB protein Zot PF05707.7 gi|385774981|ref|YP_005647549.1| - 0.069 12.6 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) NACHT PF05729.7 gi|385774981|ref|YP_005647549.1| - 0.082 12.5 0.1 0.25 10.9 0.0 1.8 1 1 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|385774981|ref|YP_005647549.1| - 0.087 12.7 0.0 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|385774981|ref|YP_005647549.1| - 0.11 12.7 3.5 0.16 12.2 0.5 2.5 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|385774981|ref|YP_005647549.1| - 0.11 12.6 0.1 0.28 11.4 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|385774981|ref|YP_005647549.1| - 0.26 12.1 3.2 2.1 9.1 2.2 2.3 1 1 0 1 1 1 0 AAA domain Y_phosphatase PF00102.22 gi|385774982|ref|YP_005647550.1| - 1.1e-10 41.2 0.0 1.2e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase DSPc PF00782.15 gi|385774982|ref|YP_005647550.1| - 4e-09 36.1 0.0 5.7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.7 gi|385774982|ref|YP_005647550.1| - 4.1e-06 26.3 0.0 4.8e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.1 gi|385774982|ref|YP_005647550.1| - 0.00035 20.6 0.0 0.00045 20.2 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.1 gi|385774982|ref|YP_005647550.1| - 0.0022 18.2 0.0 0.0042 17.3 0.0 1.4 1 1 0 1 1 1 1 Tyrosine phosphatase family Endonuclease_5 PF04493.9 gi|385774983|ref|YP_005647551.1| - 1.6e-52 177.8 0.1 1.9e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V Isochorismatase PF00857.15 gi|385774984|ref|YP_005647552.1| - 2.5e-40 138.2 0.0 2.8e-40 138.0 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DHH PF01368.15 gi|385774985|ref|YP_005647553.1| - 5.5e-08 32.5 0.1 1.1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|385774985|ref|YP_005647553.1| - 7.6e-08 31.9 0.2 2.3e-07 30.4 0.1 1.9 1 0 0 1 1 1 1 DHHA1 domain Metallophos_2 PF12850.2 gi|385774986|ref|YP_005647554.1| - 5.2e-08 32.8 0.0 7.5e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385774986|ref|YP_005647554.1| - 3.1e-05 23.4 0.0 4.4e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase YabP PF07873.6 gi|385774986|ref|YP_005647554.1| - 0.011 15.2 0.7 0.03 13.8 0.5 1.7 1 0 0 1 1 1 0 YabP family DUF763 PF05559.6 gi|385774987|ref|YP_005647555.1| - 6.6e-129 429.4 0.0 7.7e-129 429.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) PhoU_div PF01865.11 gi|385774988|ref|YP_005647556.1| - 7.1e-17 61.3 10.7 8.2e-17 61.0 7.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PHO4 PF01384.15 gi|385774989|ref|YP_005647557.1| - 6.7e-37 126.8 40.7 8e-37 126.6 25.9 2.0 1 1 0 1 1 1 1 Phosphate transporter family DUF2798 PF11391.3 gi|385774989|ref|YP_005647557.1| - 0.88 9.3 12.9 0.8 9.4 1.7 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2798) RHH_1 PF01402.16 gi|385774990|ref|YP_005647558.1| - 3.8e-06 26.5 0.0 5.7e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DEAD PF00270.24 gi|385774991|ref|YP_005647559.1| - 2.3e-28 98.8 0.0 7.9e-27 93.8 0.0 2.8 3 1 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385774991|ref|YP_005647559.1| - 3.9e-12 45.8 0.0 7.7e-12 44.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385774991|ref|YP_005647559.1| - 1e-10 41.7 0.0 2.7e-10 40.3 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|385774991|ref|YP_005647559.1| - 3.5e-05 22.7 0.0 6.9e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain DNA_pol_lambd_f PF10391.4 gi|385774991|ref|YP_005647559.1| - 0.0011 18.4 0.0 0.0065 15.9 0.0 2.4 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda AAA_19 PF13245.1 gi|385774991|ref|YP_005647559.1| - 0.0013 18.4 0.7 0.035 13.8 0.0 2.8 3 0 0 3 3 3 1 Part of AAA domain HHH_5 PF14520.1 gi|385774991|ref|YP_005647559.1| - 0.0015 18.6 0.5 0.0067 16.5 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain KaiC PF06745.8 gi|385774991|ref|YP_005647559.1| - 0.017 14.2 0.0 0.041 13.0 0.0 1.5 1 0 0 1 1 1 0 KaiC Carboxyl_trans PF01039.17 gi|385774993|ref|YP_005647561.1| - 1.3e-189 630.6 0.8 1.5e-189 630.5 0.5 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|385774993|ref|YP_005647561.1| - 0.00057 19.1 0.2 0.0015 17.7 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Biotin_lipoyl PF00364.17 gi|385774994|ref|YP_005647562.1| - 3.5e-20 71.4 1.8 3e-19 68.4 2.4 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|385774994|ref|YP_005647562.1| - 2.4e-18 65.5 6.5 1.5e-08 34.1 1.9 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|385774994|ref|YP_005647562.1| - 1.7e-13 50.5 3.3 6.4e-06 25.6 0.0 2.1 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|385774994|ref|YP_005647562.1| - 4.6e-09 35.8 2.6 0.00051 19.2 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|385774994|ref|YP_005647562.1| - 1.7e-07 31.4 0.8 0.017 15.4 0.0 3.1 3 0 0 3 3 3 2 HlyD family secretion protein NQRA PF05896.6 gi|385774994|ref|YP_005647562.1| - 0.00016 20.9 1.7 0.0005 19.3 1.2 1.8 1 1 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.14 gi|385774994|ref|YP_005647562.1| - 0.00037 20.1 0.7 0.00089 18.9 0.3 1.9 2 0 0 2 2 2 1 Glycine cleavage H-protein RnfC_N PF13375.1 gi|385774994|ref|YP_005647562.1| - 0.001 18.7 1.2 0.0029 17.2 0.8 1.8 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain QRPTase_N PF02749.11 gi|385774994|ref|YP_005647562.1| - 0.0023 17.7 0.1 0.65 9.8 0.0 2.4 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain PYNP_C PF07831.8 gi|385774994|ref|YP_005647562.1| - 0.0051 16.2 1.9 0.28 10.6 0.0 2.5 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Peptidase_M23 PF01551.17 gi|385774994|ref|YP_005647562.1| - 0.0052 16.7 0.6 0.99 9.4 0.0 2.7 1 1 1 2 2 2 1 Peptidase family M23 PTS_EIIA_1 PF00358.15 gi|385774994|ref|YP_005647562.1| - 0.0081 15.7 0.3 0.44 10.0 0.0 2.8 1 1 2 3 3 3 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DUF2118 PF09891.4 gi|385774994|ref|YP_005647562.1| - 0.1 12.3 1.1 0.56 9.8 0.5 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) Apocytochr_F_C PF01333.14 gi|385774994|ref|YP_005647562.1| - 0.13 12.0 1.7 0.7 9.7 0.1 2.1 1 1 1 2 2 2 0 Apocytochrome F, C-terminal CPSase_L_D2 PF02786.12 gi|385774995|ref|YP_005647563.1| - 2.1e-66 223.2 0.0 3e-66 222.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|385774995|ref|YP_005647563.1| - 1.2e-42 144.4 0.1 2.1e-42 143.7 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|385774995|ref|YP_005647563.1| - 8.7e-35 118.9 0.0 1.5e-34 118.1 0.0 1.4 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|385774995|ref|YP_005647563.1| - 2.1e-13 50.4 0.1 4.3e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385774995|ref|YP_005647563.1| - 1.9e-11 43.2 0.0 2.8e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|385774995|ref|YP_005647563.1| - 2.8e-07 30.1 0.0 8.4e-07 28.5 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|385774995|ref|YP_005647563.1| - 9.4e-05 21.9 0.0 0.00019 20.9 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385774995|ref|YP_005647563.1| - 0.00018 21.4 0.1 0.00028 20.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|385774995|ref|YP_005647563.1| - 0.00044 19.6 0.3 0.0011 18.4 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|385774995|ref|YP_005647563.1| - 0.079 12.1 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain DUF4322 PF14210.1 gi|385774996|ref|YP_005647564.1| - 3.8e-38 128.7 0.1 9.1e-38 127.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385774996|ref|YP_005647564.1| - 0.0033 17.2 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DDE_5 PF13546.1 gi|385774996|ref|YP_005647564.1| - 0.0034 16.2 0.0 0.0072 15.2 0.0 1.5 2 0 0 2 2 2 1 DDE superfamily endonuclease OrfB_IS605 PF01385.14 gi|385774997|ref|YP_005647565.1| - 5.7e-27 94.5 6.2 7.3e-27 94.2 4.3 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385774997|ref|YP_005647565.1| - 4.6e-24 83.8 0.1 9.4e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385774997|ref|YP_005647565.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385774997|ref|YP_005647565.1| - 0.027 14.0 0.4 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385774997|ref|YP_005647565.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385774997|ref|YP_005647565.1| - 0.094 12.2 0.1 0.27 10.7 0.0 1.9 2 0 0 2 2 2 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385774997|ref|YP_005647565.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385774997|ref|YP_005647565.1| - 0.29 10.9 0.8 9 6.1 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385774997|ref|YP_005647565.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385774997|ref|YP_005647565.1| - 4.7 7.1 5.1 4.6 7.1 0.3 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 BPD_transp_1 PF00528.17 gi|385774998|ref|YP_005647566.1| - 3.9e-17 62.3 45.1 1.2e-11 44.5 9.4 3.3 2 1 1 3 3 3 3 Binding-protein-dependent transport system inner membrane component SPW PF03779.9 gi|385774998|ref|YP_005647566.1| - 0.018 14.3 0.6 1.9 7.9 0.0 3.2 3 0 0 3 3 3 0 SPW repeat BatA PF07584.6 gi|385774998|ref|YP_005647566.1| - 2.1 8.5 0.0 2.1 8.5 0.0 3.3 3 1 1 4 4 4 0 Aerotolerance regulator N-terminal ABC_tran PF00005.22 gi|385774999|ref|YP_005647567.1| - 3.4e-28 98.6 0.0 5e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385774999|ref|YP_005647567.1| - 4.9e-10 39.8 1.2 0.00017 21.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|385774999|ref|YP_005647567.1| - 0.00024 20.3 0.0 0.00037 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|385774999|ref|YP_005647567.1| - 0.00035 20.6 0.7 0.0016 18.4 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|385774999|ref|YP_005647567.1| - 0.0011 18.1 0.1 0.27 10.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|385774999|ref|YP_005647567.1| - 0.0012 19.6 2.7 0.0088 16.8 0.6 2.5 2 2 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|385774999|ref|YP_005647567.1| - 0.0046 16.0 0.5 0.81 8.6 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|385774999|ref|YP_005647567.1| - 0.0051 16.9 0.2 0.011 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385774999|ref|YP_005647567.1| - 0.012 15.8 0.1 0.067 13.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|385774999|ref|YP_005647567.1| - 0.014 14.8 0.0 0.03 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|385774999|ref|YP_005647567.1| - 0.015 13.8 0.1 2.1 6.8 0.0 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|385774999|ref|YP_005647567.1| - 0.018 15.3 0.1 0.029 14.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385774999|ref|YP_005647567.1| - 0.037 13.7 0.1 0.075 12.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|385774999|ref|YP_005647567.1| - 0.043 14.1 0.1 0.075 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385774999|ref|YP_005647567.1| - 0.047 13.1 0.3 0.22 10.9 0.1 2.0 2 1 1 3 3 3 0 AAA-like domain NACHT PF05729.7 gi|385774999|ref|YP_005647567.1| - 0.047 13.3 0.2 0.11 12.1 0.2 1.6 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|385774999|ref|YP_005647567.1| - 0.058 12.2 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.12 gi|385774999|ref|YP_005647567.1| - 0.069 12.5 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|385774999|ref|YP_005647567.1| - 0.077 12.8 0.1 0.11 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|385774999|ref|YP_005647567.1| - 0.079 12.6 0.1 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|385774999|ref|YP_005647567.1| - 0.11 12.4 0.5 0.13 12.2 0.4 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|385774999|ref|YP_005647567.1| - 0.11 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Aconitase_C PF00694.14 gi|385775000|ref|YP_005647568.1| - 5e-22 78.4 0.1 8.5e-22 77.6 0.0 1.4 1 1 0 1 1 1 1 Aconitase C-terminal domain IlvN PF07991.7 gi|385775000|ref|YP_005647568.1| - 0.062 12.6 0.1 0.083 12.2 0.1 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Aconitase_2_N PF06434.8 gi|385775000|ref|YP_005647568.1| - 0.1 11.9 1.6 2.6 7.4 1.1 2.1 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Aconitase PF00330.15 gi|385775001|ref|YP_005647569.1| - 1.1e-59 202.1 1.1 6e-37 127.1 0.1 2.6 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|385775001|ref|YP_005647569.1| - 0.017 13.7 0.0 0.031 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF521) FAD_binding_7 PF03441.9 gi|385775002|ref|YP_005647570.1| - 2e-78 263.4 1.1 2.7e-78 262.9 0.7 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|385775002|ref|YP_005647570.1| - 6.3e-35 120.3 0.2 2.7e-34 118.2 0.0 1.9 2 0 0 2 2 2 1 DNA photolyase Glyco_hydro_15 PF00723.16 gi|385775003|ref|YP_005647571.1| - 3e-27 95.3 0.0 2.6e-17 62.5 0.1 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|385775003|ref|YP_005647571.1| - 1.6e-07 30.3 0.2 2.7e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 TrmB PF01978.14 gi|385775004|ref|YP_005647572.1| - 1.2e-10 40.9 0.7 2.2e-10 40.0 0.5 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|385775004|ref|YP_005647572.1| - 4.5e-08 32.3 4.1 7.4e-08 31.6 2.8 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385775004|ref|YP_005647572.1| - 1.7e-07 30.7 4.6 1.8e-07 30.7 1.8 2.0 2 1 0 2 2 2 1 HTH domain MarR PF01047.17 gi|385775004|ref|YP_005647572.1| - 7.4e-06 25.5 1.7 1.2e-05 24.9 0.6 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|385775004|ref|YP_005647572.1| - 1.5e-05 24.6 0.0 2.1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|385775004|ref|YP_005647572.1| - 6.6e-05 22.3 5.8 8.8e-05 21.9 4.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|385775004|ref|YP_005647572.1| - 0.00035 20.1 1.1 0.0006 19.4 0.4 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Mga PF08280.6 gi|385775004|ref|YP_005647572.1| - 0.00037 20.1 4.1 0.00076 19.1 2.8 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain GerE PF00196.14 gi|385775004|ref|YP_005647572.1| - 0.00043 19.5 0.8 0.00076 18.7 0.2 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family HTH_Crp_2 PF13545.1 gi|385775004|ref|YP_005647572.1| - 0.00047 19.8 0.1 0.00095 18.9 0.1 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|385775004|ref|YP_005647572.1| - 0.0015 18.5 1.1 0.0029 17.5 0.7 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|385775004|ref|YP_005647572.1| - 0.0017 17.5 0.0 0.005 16.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|385775004|ref|YP_005647572.1| - 0.0022 18.0 0.4 0.0048 16.9 0.3 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|385775004|ref|YP_005647572.1| - 0.0032 17.7 0.1 0.0054 17.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.8 gi|385775004|ref|YP_005647572.1| - 0.0036 16.8 0.4 0.0071 15.9 0.3 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus Sulfolobus_pRN PF05584.6 gi|385775004|ref|YP_005647572.1| - 0.0085 16.0 2.8 0.0092 15.9 0.9 1.9 1 1 1 2 2 2 1 Sulfolobus plasmid regulatory protein GntR PF00392.16 gi|385775004|ref|YP_005647572.1| - 0.009 15.4 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|385775004|ref|YP_005647572.1| - 0.023 14.2 1.5 0.071 12.6 0.2 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385775004|ref|YP_005647572.1| - 0.041 13.8 0.8 0.075 12.9 0.2 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Hs1pro-1_C PF07014.7 gi|385775004|ref|YP_005647572.1| - 0.059 12.6 1.1 0.12 11.6 0.6 1.7 1 1 1 2 2 2 0 Hs1pro-1 protein C-terminus Penicillinase_R PF03965.11 gi|385775004|ref|YP_005647572.1| - 0.064 13.3 0.3 0.085 12.9 0.2 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF387 PF04079.11 gi|385775004|ref|YP_005647572.1| - 0.074 12.4 1.1 0.12 11.6 0.7 1.5 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_3 PF01381.17 gi|385775004|ref|YP_005647572.1| - 0.08 12.8 0.1 1.3 8.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix HTH_IclR PF09339.5 gi|385775004|ref|YP_005647572.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_12 PF08461.5 gi|385775004|ref|YP_005647572.1| - 0.1 12.3 0.4 0.17 11.6 0.3 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_9 PF08221.6 gi|385775004|ref|YP_005647572.1| - 0.22 11.4 0.8 0.38 10.6 0.5 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain SPAM PF02090.10 gi|385775004|ref|YP_005647572.1| - 0.33 10.9 2.9 0.4 10.6 1.6 1.3 1 1 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein TFIIE_beta PF02186.10 gi|385775004|ref|YP_005647572.1| - 0.39 10.7 4.0 0.36 10.8 1.9 1.6 1 1 0 1 1 1 0 TFIIE beta subunit core domain HTH_19 PF12844.2 gi|385775004|ref|YP_005647572.1| - 0.43 10.6 2.7 3.2 7.8 1.9 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.8 gi|385775004|ref|YP_005647572.1| - 0.51 10.6 3.1 0.3 11.3 0.6 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_45 PF14947.1 gi|385775005|ref|YP_005647573.1| - 4.1e-29 100.2 2.7 5.1e-29 99.9 1.9 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|385775005|ref|YP_005647573.1| - 0.011 15.1 0.3 0.019 14.3 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3116 PF11313.3 gi|385775005|ref|YP_005647573.1| - 0.019 14.5 0.1 0.57 9.8 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3116) CbiA PF01656.18 gi|385775006|ref|YP_005647574.1| - 3.3e-10 39.6 0.4 9.9e-10 38.1 0.3 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385775006|ref|YP_005647574.1| - 2.2e-05 24.4 0.1 6.8e-05 22.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|385775006|ref|YP_005647574.1| - 0.04 12.9 0.6 0.23 10.4 0.1 2.2 1 1 1 2 2 2 0 Anion-transporting ATPase MipZ PF09140.6 gi|385775006|ref|YP_005647574.1| - 0.12 11.4 0.0 0.19 10.7 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ DUF3311 PF11755.3 gi|385775007|ref|YP_005647575.1| - 1.7e-16 59.5 5.3 1.8e-16 59.3 3.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4233 PF14017.1 gi|385775007|ref|YP_005647575.1| - 0.01 15.7 0.1 0.012 15.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) DUF2975 PF11188.3 gi|385775007|ref|YP_005647575.1| - 0.47 10.1 3.1 0.53 10.0 2.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) ABC2_membrane_3 PF12698.2 gi|385775007|ref|YP_005647575.1| - 4.3 6.2 7.4 4.9 6.0 5.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein SSF PF00474.12 gi|385775008|ref|YP_005647576.1| - 6.8e-14 51.3 35.5 6.8e-14 51.3 24.6 1.9 2 0 0 2 2 2 1 Sodium:solute symporter family SIR2 PF02146.12 gi|385775009|ref|YP_005647577.1| - 1.8e-50 171.1 0.0 2.1e-50 170.8 0.0 1.1 1 0 0 1 1 1 1 Sir2 family NTP_transferase PF00483.18 gi|385775011|ref|YP_005647579.1| - 1.4e-29 103.1 0.0 1.7e-29 102.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385775011|ref|YP_005647579.1| - 4e-09 36.7 0.0 5.4e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385775011|ref|YP_005647579.1| - 0.00036 20.1 0.0 0.00052 19.6 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LIP PF03583.9 gi|385775011|ref|YP_005647579.1| - 0.14 11.3 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Secretory lipase DUF4322 PF14210.1 gi|385775013|ref|YP_005647581.1| - 3.8e-38 128.7 0.1 9.1e-38 127.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385775013|ref|YP_005647581.1| - 0.0033 17.2 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DDE_5 PF13546.1 gi|385775013|ref|YP_005647581.1| - 0.0034 16.2 0.0 0.0072 15.2 0.0 1.5 2 0 0 2 2 2 1 DDE superfamily endonuclease Toxin_54 PF15533.1 gi|385775014|ref|YP_005647582.1| - 0.012 15.7 0.1 0.034 14.4 0.0 1.7 2 0 0 2 2 2 0 Putative toxin 54 DUF3487 PF11990.3 gi|385775015|ref|YP_005647583.1| - 0.0076 15.6 1.3 0.01 15.2 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3487) FA_desaturase PF00487.19 gi|385775015|ref|YP_005647583.1| - 0.11 11.9 0.1 0.12 11.8 0.0 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF3270 PF11674.3 gi|385775015|ref|YP_005647583.1| - 0.19 11.7 5.1 0.25 11.3 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3270) Wzy_C PF04932.10 gi|385775015|ref|YP_005647583.1| - 0.41 10.4 4.4 0.46 10.2 3.1 1.1 1 0 0 1 1 1 0 O-Antigen ligase Pex24p PF06398.6 gi|385775015|ref|YP_005647583.1| - 0.7 8.6 5.8 0.87 8.3 4.0 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin CoA_binding PF02629.14 gi|385775017|ref|YP_005647585.1| - 1e-23 83.6 7.0 7e-23 80.9 0.7 2.5 2 1 0 2 2 2 2 CoA binding domain Ligase_CoA PF00549.14 gi|385775017|ref|YP_005647585.1| - 5.4e-15 55.2 0.2 1.1e-14 54.3 0.1 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|385775017|ref|YP_005647585.1| - 7.1e-11 41.8 0.1 1.4e-10 40.9 0.0 1.5 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|385775017|ref|YP_005647585.1| - 2.7e-09 37.2 0.1 6.5e-09 35.9 0.1 1.7 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|385775018|ref|YP_005647586.1| - 6.1e-30 104.1 0.8 1.4e-28 99.6 0.6 2.6 1 1 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|385775018|ref|YP_005647586.1| - 4.7e-17 61.9 0.2 7.4e-17 61.3 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|385775018|ref|YP_005647586.1| - 2e-07 30.4 0.1 0.0004 19.6 0.1 3.2 2 1 0 2 2 2 2 ATP-grasp domain DUF1887 PF09002.6 gi|385775018|ref|YP_005647586.1| - 0.1 11.0 0.0 0.37 9.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1887) HhH-GPD PF00730.20 gi|385775019|ref|YP_005647587.1| - 6e-09 36.1 0.0 8.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|385775019|ref|YP_005647587.1| - 0.00036 20.0 0.0 0.00099 18.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385775019|ref|YP_005647587.1| - 0.0017 18.4 0.4 0.0068 16.5 0.0 2.2 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|385775019|ref|YP_005647587.1| - 0.08 12.8 0.0 0.25 11.2 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|385775019|ref|YP_005647587.1| - 0.19 12.0 3.4 0.27 11.4 2.4 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Glyco_trans_1_3 PF13528.1 gi|385775020|ref|YP_005647588.1| - 1.4e-09 37.6 0.0 2.8e-08 33.3 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|385775020|ref|YP_005647588.1| - 1.1e-08 34.9 0.0 3.3e-08 33.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Alg14 PF08660.6 gi|385775020|ref|YP_005647588.1| - 1.5e-05 25.0 0.0 2.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Oligosaccharide biosynthesis protein Alg14 like tRNA-synt_2b PF00587.20 gi|385775021|ref|YP_005647589.1| - 4.3e-38 130.5 0.1 7.3e-38 129.8 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|385775021|ref|YP_005647589.1| - 1.2e-19 69.9 1.1 1.2e-19 69.9 0.8 1.9 2 0 0 2 2 2 1 Anticodon binding domain DNA_binding_1 PF01035.15 gi|385775022|ref|YP_005647590.1| - 5.7e-28 96.4 0.0 7.1e-28 96.1 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.7 gi|385775022|ref|YP_005647590.1| - 0.0057 16.0 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 OrfB_IS605 PF01385.14 gi|385775023|ref|YP_005647591.1| - 2.5e-18 66.3 1.2 3.5e-18 65.8 0.9 1.1 1 0 0 1 1 1 1 Probable transposase HxlR PF01638.12 gi|385775023|ref|YP_005647591.1| - 0.06 12.9 0.7 0.15 11.7 0.2 1.8 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HrcA PF01628.16 gi|385775023|ref|YP_005647591.1| - 0.094 12.2 0.2 0.2 11.2 0.1 1.5 1 1 0 1 1 1 0 HrcA protein C terminal domain DUF772 PF05598.6 gi|385775024|ref|YP_005647592.1| - 0.00025 20.8 0.0 0.00066 19.5 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|385775024|ref|YP_005647592.1| - 0.0056 16.2 0.0 0.043 13.3 0.0 2.0 1 1 1 2 2 2 1 Transposase DDE domain SoxE PF06525.6 gi|385775025|ref|YP_005647593.1| - 2.7e-89 297.6 32.8 2e-88 294.7 22.7 2.1 1 1 0 1 1 1 1 Sulfocyanin (SoxE) Shisa PF13908.1 gi|385775025|ref|YP_005647593.1| - 0.0013 18.9 4.5 0.0021 18.2 3.2 1.4 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator Mucin PF01456.12 gi|385775025|ref|YP_005647593.1| - 0.011 15.4 23.7 0.02 14.6 16.4 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein SpoIIIAH PF12685.2 gi|385775025|ref|YP_005647593.1| - 0.11 11.9 4.5 0.21 11.0 3.1 1.4 1 0 0 1 1 1 0 SpoIIIAH-like protein TarH PF02203.10 gi|385775025|ref|YP_005647593.1| - 0.95 9.2 2.9 1.5 8.6 2.0 1.2 1 0 0 1 1 1 0 Tar ligand binding domain homologue DUF4307 PF14155.1 gi|385775025|ref|YP_005647593.1| - 2.4 7.9 7.4 1.3e+02 2.3 6.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4307) Fe-ADH PF00465.14 gi|385775027|ref|YP_005647595.1| - 1.7e-50 171.6 0.0 4.3e-50 170.3 0.0 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|385775027|ref|YP_005647595.1| - 4.1e-09 36.1 0.0 5.8e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Herpes_U55 PF06501.6 gi|385775028|ref|YP_005647596.1| - 0.013 14.1 0.4 0.016 13.8 0.3 1.0 1 0 0 1 1 1 0 Human herpesvirus U55 protein NfI_DNAbd_pre-N PF10524.4 gi|385775028|ref|YP_005647596.1| - 0.098 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Nuclear factor I protein pre-N-terminus CbiA PF01656.18 gi|385775029|ref|YP_005647597.1| - 7.4e-09 35.2 0.0 7.7e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385775029|ref|YP_005647597.1| - 8.8e-07 28.9 0.1 1.7e-06 28.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|385775029|ref|YP_005647597.1| - 0.038 13.0 0.1 0.072 12.1 0.0 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase WIYLD PF10440.4 gi|385775029|ref|YP_005647597.1| - 1.2 9.0 3.5 1.1 9.2 0.2 2.5 4 0 0 4 4 4 0 Ubiquitin-binding WIYLD domain Abhydrolase_3 PF07859.8 gi|385775030|ref|YP_005647598.1| - 1.5e-69 233.7 0.0 2e-69 233.3 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|385775030|ref|YP_005647598.1| - 5.3e-09 35.3 2.0 1.9e-08 33.4 1.4 1.7 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|385775030|ref|YP_005647598.1| - 3.3e-06 26.9 0.0 5.5e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Chlorophyllase2 PF12740.2 gi|385775030|ref|YP_005647598.1| - 8.9e-06 24.7 0.0 1.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme DUF2424 PF10340.4 gi|385775030|ref|YP_005647598.1| - 9.1e-06 24.5 0.0 1.2e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Chlorophyllase PF07224.6 gi|385775030|ref|YP_005647598.1| - 0.00029 19.7 0.0 0.00038 19.3 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase Abhydrolase_6 PF12697.2 gi|385775030|ref|YP_005647598.1| - 0.00043 20.2 0.0 0.00083 19.3 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF2974 PF11187.3 gi|385775030|ref|YP_005647598.1| - 0.047 13.0 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Esterase PF00756.15 gi|385775030|ref|YP_005647598.1| - 0.051 12.9 1.1 2.4 7.5 0.0 2.2 1 1 0 2 2 2 0 Putative esterase Peptidase_S9 PF00326.16 gi|385775030|ref|YP_005647598.1| - 0.13 11.4 0.0 0.31 10.2 0.0 1.6 1 1 0 1 1 1 0 Prolyl oligopeptidase family ADH_N PF08240.7 gi|385775031|ref|YP_005647599.1| - 7e-29 99.7 0.0 1.7e-28 98.5 0.0 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385775031|ref|YP_005647599.1| - 4.5e-19 68.2 0.2 7e-19 67.6 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385775031|ref|YP_005647599.1| - 1e-10 42.5 0.0 2.1e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|385775031|ref|YP_005647599.1| - 0.00099 18.8 2.3 0.0026 17.5 1.6 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AlaDh_PNT_C PF01262.16 gi|385775031|ref|YP_005647599.1| - 0.0086 15.6 0.6 0.017 14.7 0.4 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain SIS_2 PF13580.1 gi|385775031|ref|YP_005647599.1| - 0.015 14.9 0.5 0.049 13.3 0.3 1.9 1 0 0 1 1 1 0 SIS domain THF_DHG_CYH_C PF02882.14 gi|385775031|ref|YP_005647599.1| - 0.023 13.7 0.4 0.043 12.8 0.2 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CAP18_C PF12153.3 gi|385775031|ref|YP_005647599.1| - 0.028 14.0 0.1 0.12 12.0 0.1 2.1 1 0 0 1 1 1 0 LPS binding domain of CAP18 (C terminal) ELFV_dehydrog PF00208.16 gi|385775031|ref|YP_005647599.1| - 0.044 13.3 2.4 0.07 12.6 1.7 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E1-N PF14463.1 gi|385775031|ref|YP_005647599.1| - 0.096 12.2 0.1 0.22 11.1 0.1 1.6 1 0 0 1 1 1 0 E1 N-terminal domain Fibrillarin PF01269.12 gi|385775031|ref|YP_005647599.1| - 0.14 11.0 0.5 0.26 10.1 0.4 1.4 1 0 0 1 1 1 0 Fibrillarin Thiolase_N PF00108.18 gi|385775032|ref|YP_005647600.1| - 4.7e-69 232.2 0.0 6.3e-69 231.8 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|385775032|ref|YP_005647600.1| - 2.2e-46 156.2 0.7 2.5e-45 152.8 0.2 2.4 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|385775032|ref|YP_005647600.1| - 5.5e-07 29.3 0.2 8.9e-06 25.3 0.0 2.9 4 0 0 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.6 gi|385775032|ref|YP_005647600.1| - 0.00061 18.3 0.0 0.0012 17.3 0.0 1.4 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) Acyl-CoA_dh_1 PF00441.19 gi|385775033|ref|YP_005647601.1| - 1.4e-13 51.1 0.0 2.6e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|385775033|ref|YP_005647601.1| - 0.0026 17.9 0.0 0.0043 17.2 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Ribonuc_red_sm PF00268.16 gi|385775034|ref|YP_005647602.1| - 9.2e-14 51.1 0.0 1.5e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Rubrerythrin PF02915.12 gi|385775034|ref|YP_005647602.1| - 0.00056 20.2 0.1 0.55 10.5 0.0 2.5 1 1 1 2 2 2 2 Rubrerythrin DUF455 PF04305.9 gi|385775034|ref|YP_005647602.1| - 0.0013 18.0 0.0 0.2 10.9 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF455) E2F_TDP PF02319.15 gi|385775034|ref|YP_005647602.1| - 0.012 15.2 0.0 0.034 13.7 0.0 1.8 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain adh_short PF00106.20 gi|385775035|ref|YP_005647603.1| - 7.7e-31 107.2 0.7 1e-30 106.8 0.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385775035|ref|YP_005647603.1| - 1.5e-27 96.8 0.4 1.9e-27 96.5 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385775035|ref|YP_005647603.1| - 1.9e-08 34.1 0.1 2.6e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 KR domain POR PF01558.13 gi|385775035|ref|YP_005647603.1| - 0.008 16.1 1.2 0.51 10.2 0.0 2.2 1 1 1 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase THF_DHG_CYH_C PF02882.14 gi|385775035|ref|YP_005647603.1| - 0.09 11.8 0.4 0.28 10.2 0.1 1.9 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Alba PF01918.16 gi|385775035|ref|YP_005647603.1| - 0.092 12.3 0.1 0.28 10.7 0.1 1.8 1 0 0 1 1 1 0 Alba NmrA PF05368.8 gi|385775035|ref|YP_005647603.1| - 0.19 10.9 1.1 0.37 9.9 0.6 1.6 2 0 0 2 2 2 0 NmrA-like family ADH_N PF08240.7 gi|385775036|ref|YP_005647604.1| - 8.1e-32 109.2 0.2 1.3e-31 108.5 0.2 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385775036|ref|YP_005647604.1| - 1.6e-24 85.8 0.0 3.1e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385775036|ref|YP_005647604.1| - 3.6e-05 24.6 0.0 7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|385775036|ref|YP_005647604.1| - 0.00025 21.0 0.4 0.00047 20.1 0.3 1.5 1 0 0 1 1 1 1 TrkA-N domain PALP PF00291.20 gi|385775036|ref|YP_005647604.1| - 0.00045 19.5 0.1 0.00066 19.0 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AlaDh_PNT_C PF01262.16 gi|385775036|ref|YP_005647604.1| - 0.00081 18.9 0.1 0.00081 18.9 0.0 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|385775036|ref|YP_005647604.1| - 0.0017 17.5 0.0 0.0028 16.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|385775036|ref|YP_005647604.1| - 0.0024 17.4 0.3 0.0041 16.7 0.2 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.15 gi|385775036|ref|YP_005647604.1| - 0.0025 17.8 0.1 0.0046 17.0 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|385775036|ref|YP_005647604.1| - 0.0038 17.0 0.1 0.0038 17.0 0.0 1.7 2 0 0 2 2 1 1 ThiF family Spermine_synth PF01564.12 gi|385775036|ref|YP_005647604.1| - 0.0043 16.0 0.0 0.0062 15.4 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Saccharop_dh PF03435.13 gi|385775036|ref|YP_005647604.1| - 0.0047 15.9 0.1 0.0077 15.2 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|385775036|ref|YP_005647604.1| - 0.045 14.0 0.0 0.074 13.3 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain Methyltransf_12 PF08242.7 gi|385775036|ref|YP_005647604.1| - 0.096 13.1 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain 3HCDH_N PF02737.13 gi|385775036|ref|YP_005647604.1| - 0.1 12.2 0.1 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3211 PF11485.3 gi|385775037|ref|YP_005647605.1| - 1.4e-42 144.9 1.8 1.6e-42 144.7 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) HpaB_N PF11794.3 gi|385775038|ref|YP_005647606.1| - 1.8e-74 250.4 1.7 2.6e-74 249.9 1.2 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|385775038|ref|YP_005647606.1| - 8.8e-47 158.5 0.1 1.3e-46 158.0 0.1 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Telomere_Sde2 PF13019.1 gi|385775039|ref|YP_005647607.1| - 0.12 12.0 1.8 0.13 11.9 1.3 1.0 1 0 0 1 1 1 0 Telomere stability and silencing Sugar_tr PF00083.19 gi|385775040|ref|YP_005647608.1| - 4.3e-43 147.5 26.6 5e-43 147.3 18.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|385775040|ref|YP_005647608.1| - 9.3e-34 116.6 51.2 3.4e-27 95.0 20.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|385775040|ref|YP_005647608.1| - 0.00048 20.1 0.7 0.00048 20.1 0.5 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF1228) TetR_N PF00440.18 gi|385775041|ref|YP_005647609.1| - 2.3e-14 52.7 0.1 4.9e-14 51.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family SCP2 PF02036.12 gi|385775042|ref|YP_005647610.1| - 0.07 13.4 0.0 0.16 12.2 0.0 1.7 1 1 0 1 1 1 0 SCP-2 sterol transfer family Thiolase_C PF02803.13 gi|385775043|ref|YP_005647611.1| - 7.7e-05 22.1 0.1 0.0077 15.6 0.0 2.4 2 0 0 2 2 2 2 Thiolase, C-terminal domain DUF35 PF01796.12 gi|385775044|ref|YP_005647612.1| - 1.5e-09 37.9 0.0 1.9e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|385775044|ref|YP_005647612.1| - 1.4e-08 34.4 1.4 2.2e-08 33.7 1.0 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TFIIS_C PF01096.13 gi|385775044|ref|YP_005647612.1| - 0.00037 20.0 1.6 0.061 12.9 0.2 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|385775044|ref|YP_005647612.1| - 0.00085 18.6 1.3 0.31 10.3 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding HypA PF01155.14 gi|385775044|ref|YP_005647612.1| - 0.0019 17.8 0.1 0.0028 17.2 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|385775044|ref|YP_005647612.1| - 0.0031 16.9 1.8 0.013 14.9 0.1 2.3 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|385775044|ref|YP_005647612.1| - 0.0037 17.0 1.3 0.0057 16.4 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon FdhE PF04216.7 gi|385775044|ref|YP_005647612.1| - 0.0039 16.9 0.1 0.0052 16.5 0.1 1.2 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|385775044|ref|YP_005647612.1| - 0.0048 16.0 6.9 0.01 14.9 4.8 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|385775044|ref|YP_005647612.1| - 0.012 15.9 1.1 0.52 10.6 0.1 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.1 gi|385775044|ref|YP_005647612.1| - 0.013 15.1 2.6 0.17 11.6 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|385775044|ref|YP_005647612.1| - 0.015 14.8 2.2 0.14 11.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385775044|ref|YP_005647612.1| - 0.024 14.5 5.1 2.1 8.3 3.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|385775044|ref|YP_005647612.1| - 0.025 14.0 5.8 0.65 9.5 0.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|385775044|ref|YP_005647612.1| - 0.077 12.7 0.3 6.7 6.4 0.0 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.6 gi|385775044|ref|YP_005647612.1| - 0.087 12.3 8.5 0.75 9.3 0.6 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.5 gi|385775044|ref|YP_005647612.1| - 0.09 12.7 0.5 5.6 6.9 0.0 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF2248 PF10005.4 gi|385775044|ref|YP_005647612.1| - 0.09 11.6 0.0 0.094 11.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2248) Baculo_ME53 PF06061.6 gi|385775044|ref|YP_005647612.1| - 0.11 11.5 0.4 0.11 11.4 0.3 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 DUF2082 PF09855.4 gi|385775044|ref|YP_005647612.1| - 0.12 12.2 3.0 3.6 7.5 0.1 2.4 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS1595 PF12760.2 gi|385775044|ref|YP_005647612.1| - 0.14 11.9 4.5 0.97 9.2 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NRDD PF13597.1 gi|385775044|ref|YP_005647612.1| - 0.15 10.1 0.2 0.18 9.8 0.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Ogr_Delta PF04606.7 gi|385775044|ref|YP_005647612.1| - 0.17 11.5 1.2 7.9 6.2 0.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.1 gi|385775044|ref|YP_005647612.1| - 0.2 11.3 5.0 0.36 10.5 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|385775044|ref|YP_005647612.1| - 0.47 9.9 4.6 4.4 6.8 0.1 2.8 3 0 0 3 3 3 0 A2L zinc ribbon domain GFA PF04828.9 gi|385775044|ref|YP_005647612.1| - 0.48 10.3 3.1 15 5.5 2.1 2.3 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme Zn_ribbon_recom PF13408.1 gi|385775044|ref|YP_005647612.1| - 0.5 10.6 5.0 90 3.4 3.5 2.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain UPF0547 PF10571.4 gi|385775044|ref|YP_005647612.1| - 0.57 9.9 4.6 5.3 6.8 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|385775044|ref|YP_005647612.1| - 1.3 8.5 9.8 2.8 7.4 1.0 2.3 1 1 1 2 2 2 0 HypF finger NOB1_Zn_bind PF08772.6 gi|385775044|ref|YP_005647612.1| - 1.4 8.7 6.1 6.3 6.7 3.6 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Prim_Zn_Ribbon PF08273.7 gi|385775044|ref|YP_005647612.1| - 1.9 8.6 5.9 0.7 10.0 0.2 2.5 2 1 1 3 3 2 0 Zinc-binding domain of primase-helicase zf-C2HC_2 PF13913.1 gi|385775044|ref|YP_005647612.1| - 4.6 7.0 6.6 10 5.9 0.6 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type AMP-binding PF00501.23 gi|385775045|ref|YP_005647613.1| - 2.5e-81 273.2 0.0 3.1e-81 272.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385775045|ref|YP_005647613.1| - 2.1e-18 67.0 0.0 4.7e-18 65.9 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|385775046|ref|YP_005647614.1| - 4.9e-24 85.0 0.1 1.1e-23 83.9 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|385775046|ref|YP_005647614.1| - 4.3e-17 61.3 0.0 8.9e-17 60.3 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.19 gi|385775046|ref|YP_005647614.1| - 1.1e-14 54.7 0.3 9.7e-12 45.2 0.2 2.3 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|385775046|ref|YP_005647614.1| - 0.021 14.2 0.0 2.6 7.3 0.0 2.9 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Acyl-CoA_ox_N PF14749.1 gi|385775046|ref|YP_005647614.1| - 0.06 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal ECH PF00378.15 gi|385775047|ref|YP_005647615.1| - 2.7e-67 226.4 0.0 5e-67 225.5 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|385775047|ref|YP_005647615.1| - 2.4e-63 213.0 0.2 4e-63 212.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|385775047|ref|YP_005647615.1| - 1.1e-46 157.1 0.0 1.3e-24 86.4 0.0 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|385775047|ref|YP_005647615.1| - 0.0021 17.8 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase BEN PF10523.4 gi|385775047|ref|YP_005647615.1| - 0.012 15.6 0.0 3.7 7.6 0.0 2.7 2 0 0 2 2 2 0 BEN domain 2-Hacid_dh_C PF02826.14 gi|385775047|ref|YP_005647615.1| - 0.051 12.7 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|385775047|ref|YP_005647615.1| - 0.1 12.3 0.0 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ECH_C PF13766.1 gi|385775047|ref|YP_005647615.1| - 0.12 12.5 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region Shikimate_DH PF01488.15 gi|385775047|ref|YP_005647615.1| - 0.12 12.4 0.4 0.83 9.7 0.1 2.6 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase Lactamase_B PF00753.22 gi|385775048|ref|YP_005647616.1| - 3.1e-26 92.2 0.0 4.6e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385775048|ref|YP_005647616.1| - 0.00031 20.3 0.0 0.0011 18.6 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|385775048|ref|YP_005647616.1| - 0.0095 15.6 0.0 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Glyoxalase PF00903.20 gi|385775048|ref|YP_005647616.1| - 0.07 13.0 0.0 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF2458 PF10454.4 gi|385775048|ref|YP_005647616.1| - 0.072 12.9 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) ALIX_LYPXL_bnd PF13949.1 gi|385775048|ref|YP_005647616.1| - 0.079 11.9 0.1 0.12 11.2 0.1 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV CHASE3 PF05227.8 gi|385775048|ref|YP_005647616.1| - 0.099 12.3 0.1 1.6 8.4 0.0 2.2 2 0 0 2 2 2 0 CHASE3 domain SF3a60_bindingd PF12108.3 gi|385775048|ref|YP_005647616.1| - 9.8 5.8 9.4 1.2 8.7 1.8 2.7 3 0 0 3 3 3 0 Splicing factor SF3a60 binding domain Sugar_tr PF00083.19 gi|385775049|ref|YP_005647617.1| - 7.1e-39 133.6 23.3 8e-39 133.4 16.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|385775049|ref|YP_005647617.1| - 7.4e-31 107.1 35.6 7.4e-31 107.1 24.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|385775049|ref|YP_005647617.1| - 0.0022 16.2 7.7 0.0037 15.5 5.3 1.3 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) DUF1228 PF06779.9 gi|385775049|ref|YP_005647617.1| - 0.004 17.1 1.0 0.019 14.9 0.2 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1228) Lactamase_B PF00753.22 gi|385775053|ref|YP_005647621.1| - 6.3e-27 94.4 0.0 8.1e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385775053|ref|YP_005647621.1| - 0.00074 19.1 0.1 0.0011 18.5 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FAA_hydrolase PF01557.13 gi|385775054|ref|YP_005647622.1| - 3.2e-47 160.8 0.0 4.4e-47 160.3 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Abhydrolase_3 PF07859.8 gi|385775055|ref|YP_005647623.1| - 1.1e-71 240.8 0.0 1.3e-71 240.5 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF2424 PF10340.4 gi|385775055|ref|YP_005647623.1| - 3.5e-09 35.7 0.4 5.2e-09 35.2 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Peptidase_S9 PF00326.16 gi|385775055|ref|YP_005647623.1| - 3.9e-07 29.5 0.0 6e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.7 gi|385775055|ref|YP_005647623.1| - 3.3e-06 25.8 0.1 0.0036 15.8 0.0 2.2 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) COesterase PF00135.23 gi|385775055|ref|YP_005647623.1| - 3.4e-06 26.0 0.7 7.9e-06 24.8 0.5 1.6 1 1 0 1 1 1 1 Carboxylesterase family Chlorophyllase2 PF12740.2 gi|385775055|ref|YP_005647623.1| - 2.3e-05 23.3 0.0 3.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Chlorophyllase enzyme Abhydrolase_5 PF12695.2 gi|385775055|ref|YP_005647623.1| - 4e-05 23.4 0.0 5.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|385775055|ref|YP_005647623.1| - 0.013 14.9 0.0 0.052 12.9 0.0 1.9 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) PAF-AH_p_II PF03403.8 gi|385775055|ref|YP_005647623.1| - 0.036 12.3 0.0 0.37 9.0 0.0 2.0 1 1 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II PTE PF02126.13 gi|385775056|ref|YP_005647624.1| - 1.7e-80 270.3 0.0 2e-80 270.1 0.0 1.0 1 0 0 1 1 1 1 Phosphotriesterase family AMP-binding PF00501.23 gi|385775057|ref|YP_005647625.1| - 1.1e-104 350.1 0.0 1.4e-104 349.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385775057|ref|YP_005647625.1| - 3e-18 66.5 0.1 6.2e-18 65.5 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain COXG PF06240.8 gi|385775058|ref|YP_005647626.1| - 4.3e-41 139.8 0.1 4.7e-41 139.7 0.1 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) AA_synth PF06684.6 gi|385775058|ref|YP_005647626.1| - 0.12 11.7 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 Amino acid synthesis Ret_tiss PF10044.4 gi|385775058|ref|YP_005647626.1| - 0.13 12.8 0.0 1.6 9.2 0.0 2.1 2 0 0 2 2 2 0 Retinal tissue protein DAO PF01266.19 gi|385775059|ref|YP_005647627.1| - 2.6e-50 171.3 0.0 3e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|385775059|ref|YP_005647627.1| - 1.3e-07 31.0 0.2 0.0004 19.5 0.4 2.3 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|385775059|ref|YP_005647627.1| - 1.1e-05 24.4 0.3 0.0017 17.2 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|385775059|ref|YP_005647627.1| - 0.00011 22.1 0.6 0.00064 19.6 0.4 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385775059|ref|YP_005647627.1| - 0.00023 21.1 1.0 0.00056 19.8 0.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Mqo PF06039.10 gi|385775059|ref|YP_005647627.1| - 0.0039 15.4 0.0 0.0062 14.7 0.0 1.2 1 0 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) HI0933_like PF03486.9 gi|385775059|ref|YP_005647627.1| - 0.009 14.5 0.2 0.017 13.6 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.2 gi|385775059|ref|YP_005647627.1| - 0.015 14.4 0.5 0.029 13.4 0.4 1.7 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|385775059|ref|YP_005647627.1| - 0.024 13.5 1.4 0.086 11.6 0.1 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|385775059|ref|YP_005647627.1| - 0.037 14.0 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385775059|ref|YP_005647627.1| - 0.039 14.3 4.7 0.12 12.8 0.4 3.2 4 0 0 4 4 3 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|385775059|ref|YP_005647627.1| - 0.063 11.9 0.4 0.098 11.2 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Thi4 PF01946.12 gi|385775059|ref|YP_005647627.1| - 0.2 10.7 6.4 0.16 11.0 0.8 2.5 1 1 0 2 2 2 0 Thi4 family FGGY_N PF00370.16 gi|385775060|ref|YP_005647628.1| - 9e-17 61.1 0.0 1e-16 61.0 0.0 1.0 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.15 gi|385775060|ref|YP_005647628.1| - 0.053 12.8 0.0 0.065 12.5 0.0 1.1 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family dCMP_cyt_deam_1 PF00383.17 gi|385775060|ref|YP_005647628.1| - 0.14 11.8 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Cytidine and deoxycytidylate deaminase zinc-binding region ABC2_membrane PF01061.19 gi|385775061|ref|YP_005647629.1| - 2.3e-36 124.9 21.9 2.3e-36 124.9 15.2 2.0 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|385775061|ref|YP_005647629.1| - 7.7e-18 64.6 27.6 7.7e-18 64.6 19.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|385775061|ref|YP_005647629.1| - 2.8e-11 42.8 21.0 3.3e-11 42.5 14.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|385775061|ref|YP_005647629.1| - 3.1e-09 36.3 32.9 5.1e-09 35.6 22.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|385775061|ref|YP_005647629.1| - 0.00098 18.4 18.6 0.00098 18.4 12.9 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|385775062|ref|YP_005647630.1| - 3.6e-31 108.2 0.0 5.7e-31 107.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775062|ref|YP_005647630.1| - 5.9e-14 52.7 0.1 1.7e-09 38.0 0.0 2.3 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|385775062|ref|YP_005647630.1| - 1.3e-12 47.9 0.1 2.8e-12 46.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|385775062|ref|YP_005647630.1| - 5.9e-06 26.7 0.3 7.5e-06 26.4 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775062|ref|YP_005647630.1| - 1.6e-05 24.3 0.1 2.8e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|385775062|ref|YP_005647630.1| - 6.9e-05 22.0 0.1 0.0028 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|385775062|ref|YP_005647630.1| - 0.001 18.3 0.4 0.018 14.2 0.0 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|385775062|ref|YP_005647630.1| - 0.054 13.4 0.0 0.15 12.0 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|385775062|ref|YP_005647630.1| - 0.082 12.0 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|385775062|ref|YP_005647630.1| - 0.099 12.5 0.1 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385775062|ref|YP_005647630.1| - 0.13 11.6 0.4 0.9 8.9 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|385775062|ref|YP_005647630.1| - 0.17 12.0 1.6 1.4 9.1 0.4 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PadR PF03551.9 gi|385775063|ref|YP_005647631.1| - 2.3e-10 40.1 0.0 4.7e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|385775063|ref|YP_005647631.1| - 0.00022 20.9 0.2 0.00055 19.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix Phage_Mu_Gam PF07352.7 gi|385775063|ref|YP_005647631.1| - 0.036 13.5 2.8 0.048 13.1 2.0 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein TrmB PF01978.14 gi|385775063|ref|YP_005647631.1| - 0.1 12.3 0.1 0.58 9.9 0.0 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF807 PF05660.6 gi|385775063|ref|YP_005647631.1| - 0.12 11.9 0.1 0.24 11.0 0.0 1.5 2 0 0 2 2 2 0 Coxiella burnetii protein of unknown function (DUF807) Arch_ATPase PF01637.13 gi|385775064|ref|YP_005647632.1| - 9.2e-08 32.0 0.0 1.1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|385775064|ref|YP_005647632.1| - 0.0092 15.9 0.0 0.0095 15.9 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|385775064|ref|YP_005647632.1| - 0.034 14.0 0.1 0.044 13.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain 4HBT PF03061.17 gi|385775066|ref|YP_005647634.1| - 3.5e-16 59.0 0.0 5.9e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|385775066|ref|YP_005647634.1| - 0.0013 18.5 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.1 gi|385775066|ref|YP_005647634.1| - 0.016 15.2 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) DUF2551 PF10826.3 gi|385775068|ref|YP_005647636.1| - 0.026 14.4 0.8 2.1 8.3 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2551) PqqD PF05402.7 gi|385775068|ref|YP_005647636.1| - 0.1 12.6 0.2 0.32 11.0 0.0 1.8 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) DUF1803 PF08820.5 gi|385775068|ref|YP_005647636.1| - 0.12 12.0 0.9 0.26 11.0 0.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) HisKA PF00512.20 gi|385775068|ref|YP_005647636.1| - 0.13 12.2 0.4 0.29 11.1 0.3 1.7 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain DUF3186 PF11382.3 gi|385775068|ref|YP_005647636.1| - 0.13 11.3 0.7 0.16 11.1 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) L31 PF09784.4 gi|385775068|ref|YP_005647636.1| - 0.38 10.8 1.6 0.5 10.4 0.9 1.4 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 ATP-cone PF03477.11 gi|385775068|ref|YP_005647636.1| - 0.46 10.9 4.2 4.5 7.7 0.3 2.1 1 1 1 2 2 2 0 ATP cone domain Rdx PF10262.4 gi|385775069|ref|YP_005647637.1| - 2.3e-18 65.9 0.0 3.3e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Rdx family YHS PF04945.8 gi|385775069|ref|YP_005647637.1| - 3.6e-14 52.3 0.3 5.3e-14 51.7 0.2 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|385775069|ref|YP_005647637.1| - 0.0018 17.8 0.5 0.0032 17.0 0.3 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|385775069|ref|YP_005647637.1| - 0.0025 17.9 2.0 0.0025 17.9 1.4 1.6 2 0 0 2 2 2 1 Archaeal TRASH domain Pyr_redox_2 PF07992.9 gi|385775070|ref|YP_005647638.1| - 9.4e-33 113.7 0.0 3.7e-32 111.8 0.0 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385775070|ref|YP_005647638.1| - 5e-17 62.0 2.2 6.1e-16 58.6 0.3 3.0 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.1 gi|385775070|ref|YP_005647638.1| - 3.7e-14 52.7 0.0 1.4e-13 50.9 0.0 1.9 2 0 0 2 2 2 1 Reductase C-terminal DAO PF01266.19 gi|385775070|ref|YP_005647638.1| - 8.3e-06 24.9 0.2 0.046 12.6 0.2 3.3 3 0 0 3 3 3 1 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|385775070|ref|YP_005647638.1| - 0.00055 20.0 0.0 0.02 14.9 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Pyr_redox_3 PF13738.1 gi|385775070|ref|YP_005647638.1| - 0.00062 19.8 0.1 1.8 8.5 0.1 3.1 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|385775070|ref|YP_005647638.1| - 0.00063 19.8 1.9 0.3 11.1 0.2 3.6 4 1 0 4 4 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|385775070|ref|YP_005647638.1| - 0.00091 19.0 0.1 2.6 7.7 0.0 3.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding ThiF PF00899.16 gi|385775070|ref|YP_005647638.1| - 0.0012 18.6 0.0 0.13 12.0 0.1 2.9 3 0 0 3 3 3 1 ThiF family FAD_binding_3 PF01494.14 gi|385775070|ref|YP_005647638.1| - 0.0026 16.8 0.1 0.03 13.3 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|385775070|ref|YP_005647638.1| - 0.0079 15.0 0.0 9.8 4.9 0.0 3.1 3 0 0 3 3 3 0 FAD binding domain NAD_binding_7 PF13241.1 gi|385775070|ref|YP_005647638.1| - 0.008 16.4 0.0 1.6 9.0 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|385775070|ref|YP_005647638.1| - 0.011 15.7 0.2 2.5 8.1 0.1 2.5 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_8 PF13450.1 gi|385775070|ref|YP_005647638.1| - 0.023 14.7 0.2 2 8.5 0.1 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|385775070|ref|YP_005647638.1| - 0.032 13.1 0.1 38 3.0 0.1 3.7 3 1 1 4 4 4 0 Lycopene cyclase protein DUF1188 PF06690.6 gi|385775070|ref|YP_005647638.1| - 0.047 12.8 0.0 0.088 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) AlaDh_PNT_C PF01262.16 gi|385775070|ref|YP_005647638.1| - 0.07 12.6 0.0 15 5.1 0.0 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|385775070|ref|YP_005647638.1| - 0.081 11.7 0.5 1.4 7.6 0.3 2.8 3 1 2 5 5 5 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.14 gi|385775070|ref|YP_005647638.1| - 0.1 11.7 0.0 0.24 10.5 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|385775070|ref|YP_005647638.1| - 0.12 12.0 0.2 0.2 11.2 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_23 PF13489.1 gi|385775071|ref|YP_005647639.1| - 0.15 11.7 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Glyco_hydro_12 PF01670.11 gi|385775072|ref|YP_005647640.1| - 2.2e-15 56.7 1.4 4.8e-15 55.6 1.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 DmpG_comm PF07836.6 gi|385775072|ref|YP_005647640.1| - 0.15 11.4 0.0 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 DmpG-like communication domain UPF0047 PF01894.12 gi|385775073|ref|YP_005647641.1| - 1.8e-36 124.5 0.0 2.3e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Luciferase_N PF05295.6 gi|385775073|ref|YP_005647641.1| - 0.045 13.5 0.0 0.096 12.5 0.0 1.5 1 1 0 1 1 1 0 Luciferase/LBP N-terminal domain Metallophos PF00149.23 gi|385775074|ref|YP_005647642.1| - 0.084 12.2 0.0 0.088 12.1 0.0 1.0 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase Transglut_core PF01841.14 gi|385775075|ref|YP_005647643.1| - 2e-19 69.8 0.0 3.6e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.7 gi|385775075|ref|YP_005647643.1| - 3e-06 26.6 0.0 4.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain Transglut_core3 PF13471.1 gi|385775075|ref|YP_005647643.1| - 2e-05 24.3 0.0 3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.5 gi|385775075|ref|YP_005647643.1| - 0.075 13.3 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial transglutaminase-like N-terminal region DUF973 PF06157.6 gi|385775076|ref|YP_005647644.1| - 9.2e-25 87.1 6.7 1.1e-24 86.8 4.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) HTH_24 PF13412.1 gi|385775077|ref|YP_005647645.1| - 9e-15 53.7 1.8 2.5e-14 52.3 1.2 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385775077|ref|YP_005647645.1| - 9.4e-13 47.4 0.4 2.3e-12 46.2 0.1 1.8 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|385775077|ref|YP_005647645.1| - 6.8e-09 35.3 0.0 1.1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|385775077|ref|YP_005647645.1| - 7e-08 32.1 0.0 1.4e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385775077|ref|YP_005647645.1| - 3.2e-06 26.3 0.2 2.1e-05 23.7 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|385775077|ref|YP_005647645.1| - 9.2e-06 25.1 0.1 0.00077 19.0 0.0 3.0 3 0 0 3 3 3 1 Homeodomain-like domain MarR PF01047.17 gi|385775077|ref|YP_005647645.1| - 9.7e-05 21.9 0.0 0.00029 20.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|385775077|ref|YP_005647645.1| - 0.00013 21.5 0.7 0.00027 20.5 0.2 1.8 2 0 0 2 2 1 1 HTH domain MarR_2 PF12802.2 gi|385775077|ref|YP_005647645.1| - 0.00016 21.2 0.0 0.00091 18.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_30 PF13556.1 gi|385775077|ref|YP_005647645.1| - 0.00042 19.8 0.0 0.002 17.6 0.0 2.1 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|385775077|ref|YP_005647645.1| - 0.00054 19.3 0.3 0.0015 17.9 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|385775077|ref|YP_005647645.1| - 0.00078 18.9 0.1 0.0069 15.9 0.1 2.3 3 0 0 3 3 2 1 DeoR-like helix-turn-helix domain MerR_1 PF13411.1 gi|385775077|ref|YP_005647645.1| - 0.00091 18.9 0.2 0.61 9.8 0.0 2.8 3 0 0 3 3 3 1 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|385775077|ref|YP_005647645.1| - 0.0019 18.1 0.1 0.022 14.7 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|385775077|ref|YP_005647645.1| - 0.0023 17.5 0.0 0.004 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_8 PF02954.14 gi|385775077|ref|YP_005647645.1| - 0.0044 16.5 0.1 0.024 14.1 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family TrmB PF01978.14 gi|385775077|ref|YP_005647645.1| - 0.0068 16.0 0.1 0.016 14.9 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385775077|ref|YP_005647645.1| - 0.0069 15.9 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MerR PF00376.18 gi|385775077|ref|YP_005647645.1| - 0.0071 15.8 0.0 0.053 13.0 0.0 2.2 2 0 0 2 2 2 1 MerR family regulatory protein HTH_27 PF13463.1 gi|385775077|ref|YP_005647645.1| - 0.0076 16.5 0.1 0.072 13.4 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|385775077|ref|YP_005647645.1| - 0.011 15.2 0.3 0.045 13.3 0.0 2.1 3 0 0 3 3 2 0 HTH DNA binding domain TFIIE_alpha PF02002.12 gi|385775077|ref|YP_005647645.1| - 0.015 14.7 1.2 0.023 14.1 0.2 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit DUF742 PF05331.6 gi|385775077|ref|YP_005647645.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF742) HTH_38 PF13936.1 gi|385775077|ref|YP_005647645.1| - 0.031 13.8 2.0 0.076 12.5 0.1 2.4 3 0 0 3 3 2 0 Helix-turn-helix domain DDRGK PF09756.4 gi|385775077|ref|YP_005647645.1| - 0.034 13.5 0.1 0.05 13.0 0.1 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_12 PF08461.5 gi|385775077|ref|YP_005647645.1| - 0.043 13.5 1.7 0.5 10.1 0.6 2.6 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_3 PF01381.17 gi|385775077|ref|YP_005647645.1| - 0.044 13.6 0.6 0.76 9.6 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix Phage_CI_repr PF07022.8 gi|385775077|ref|YP_005647645.1| - 0.062 13.3 0.0 0.31 11.1 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain Ribosomal_S25 PF03297.10 gi|385775077|ref|YP_005647645.1| - 0.064 13.2 0.7 2.1 8.4 0.0 2.2 2 0 0 2 2 2 0 S25 ribosomal protein DUF2089 PF09862.4 gi|385775077|ref|YP_005647645.1| - 0.066 13.0 0.1 0.15 11.8 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF2089) RHH_3 PF12651.2 gi|385775077|ref|YP_005647645.1| - 0.085 12.5 0.9 0.25 11.1 0.1 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix domain Mga PF05043.8 gi|385775077|ref|YP_005647645.1| - 0.099 12.9 0.1 0.29 11.4 0.0 1.8 2 0 0 2 2 1 0 Mga helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385775077|ref|YP_005647645.1| - 0.13 12.1 0.1 0.9 9.5 0.0 2.3 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain TPP_enzyme_C PF02775.16 gi|385775078|ref|YP_005647646.1| - 1.3e-18 66.9 0.1 2e-18 66.4 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|385775078|ref|YP_005647646.1| - 0.00058 18.8 0.1 0.0016 17.4 0.0 1.7 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase GHMP_kinases_N PF00288.21 gi|385775078|ref|YP_005647646.1| - 0.011 15.8 0.3 0.02 14.9 0.2 1.4 1 0 0 1 1 1 0 GHMP kinases N terminal domain CoA_binding_3 PF13727.1 gi|385775078|ref|YP_005647646.1| - 0.03 14.1 0.1 0.046 13.5 0.1 1.3 1 0 0 1 1 1 0 CoA-binding domain POR_N PF01855.14 gi|385775079|ref|YP_005647647.1| - 1.8e-64 217.3 0.0 2.4e-64 217.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|385775079|ref|YP_005647647.1| - 6.3e-05 22.9 0.0 0.00019 21.3 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|385775079|ref|YP_005647647.1| - 0.0003 20.3 0.5 0.00066 19.2 0.3 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_21 PF14697.1 gi|385775080|ref|YP_005647648.1| - 2.1e-12 46.6 13.6 3.2e-12 46.0 9.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385775080|ref|YP_005647648.1| - 1.7e-09 36.8 19.5 1.4e-05 24.4 3.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385775080|ref|YP_005647648.1| - 4.4e-07 29.4 13.5 0.0026 17.5 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385775080|ref|YP_005647648.1| - 1.4e-06 28.5 13.1 2.8e-06 27.6 9.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385775080|ref|YP_005647648.1| - 3.1e-06 27.3 18.2 6.8e-06 26.2 12.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385775080|ref|YP_005647648.1| - 5e-06 26.2 13.1 9.9e-06 25.2 9.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385775080|ref|YP_005647648.1| - 1.3e-05 25.8 10.8 0.00025 21.7 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|385775080|ref|YP_005647648.1| - 6.6e-05 23.1 7.9 0.038 14.3 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385775080|ref|YP_005647648.1| - 0.0006 19.7 12.9 0.0019 18.1 1.6 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385775080|ref|YP_005647648.1| - 0.0025 18.0 17.9 0.03 14.6 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|385775080|ref|YP_005647648.1| - 0.0038 17.5 5.4 0.0038 17.5 3.7 3.1 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|385775080|ref|YP_005647648.1| - 0.035 13.9 8.3 0.035 13.9 5.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385775080|ref|YP_005647648.1| - 0.18 12.4 17.8 0.17 12.4 3.3 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|385775080|ref|YP_005647648.1| - 0.26 11.7 17.9 0.41 11.1 5.0 2.8 2 2 0 2 2 2 0 4Fe-4S dicluster domain MFS_1 PF07690.11 gi|385775081|ref|YP_005647649.1| - 6.3e-39 133.6 49.7 7.7e-39 133.3 31.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775081|ref|YP_005647649.1| - 8.2e-06 24.6 12.7 8.2e-06 24.6 8.8 3.0 1 1 1 2 2 2 2 Sugar (and other) transporter Lactate_perm PF02652.9 gi|385775082|ref|YP_005647650.1| - 1.5e-106 356.9 36.7 2.2e-106 356.4 25.5 1.2 1 0 0 1 1 1 1 L-lactate permease MFS_2 PF13347.1 gi|385775083|ref|YP_005647651.1| - 7.3e-10 37.8 10.6 7.3e-10 37.8 7.3 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.11 gi|385775083|ref|YP_005647651.1| - 2.6e-08 32.9 15.6 2.6e-08 32.9 10.8 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily Amidase PF01425.16 gi|385775084|ref|YP_005647652.1| - 1.2e-106 357.2 0.0 1.5e-106 356.9 0.0 1.0 1 0 0 1 1 1 1 Amidase AhpC-TSA PF00578.16 gi|385775085|ref|YP_005647653.1| - 7e-35 119.4 0.0 1.6e-34 118.2 0.0 1.6 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.5 gi|385775085|ref|YP_005647653.1| - 7.9e-17 61.1 0.0 1.2e-16 60.5 0.0 1.3 1 1 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|385775085|ref|YP_005647653.1| - 3.2e-13 49.0 0.1 6.2e-13 48.1 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Nitro_FeMo-Co PF02579.12 gi|385775086|ref|YP_005647654.1| - 2.8e-12 46.5 0.0 3.7e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF3311 PF11755.3 gi|385775089|ref|YP_005647657.1| - 4.2e-16 58.2 7.4 4.6e-16 58.0 5.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) 7tm_7 PF08395.7 gi|385775089|ref|YP_005647657.1| - 0.0071 15.4 4.1 0.0078 15.2 2.9 1.0 1 0 0 1 1 1 1 7tm Chemosensory receptor DctQ PF04290.7 gi|385775089|ref|YP_005647657.1| - 0.17 11.6 4.5 0.19 11.5 3.1 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component HIG_1_N PF04588.8 gi|385775089|ref|YP_005647657.1| - 0.2 11.3 1.5 12 5.7 0.2 2.1 2 0 0 2 2 2 0 Hypoxia induced protein conserved region DUF997 PF06196.7 gi|385775089|ref|YP_005647657.1| - 0.25 10.8 4.3 0.29 10.6 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF997) DUF485 PF04341.7 gi|385775089|ref|YP_005647657.1| - 0.4 10.4 6.2 0.5 10.1 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 7kD_coat PF02495.12 gi|385775089|ref|YP_005647657.1| - 0.56 9.6 2.8 7.4 6.1 0.2 2.1 2 0 0 2 2 2 0 7kD viral coat protein SdpI PF13630.1 gi|385775089|ref|YP_005647657.1| - 2.6 7.8 8.8 4.3 7.1 6.1 1.4 1 1 0 1 1 1 0 SdpI/YhfL protein family SSF PF00474.12 gi|385775090|ref|YP_005647658.1| - 9.3e-17 60.7 32.1 1.6e-16 59.9 22.3 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2434 PF10361.4 gi|385775090|ref|YP_005647658.1| - 0.0064 15.5 1.3 0.016 14.2 0.9 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2434) DUF1294 PF06961.8 gi|385775090|ref|YP_005647658.1| - 0.56 10.1 3.1 0.84 9.6 0.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1294) Amidohydro_2 PF04909.9 gi|385775091|ref|YP_005647659.1| - 9.8e-49 166.3 0.0 1.1e-48 166.1 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase DUF973 PF06157.6 gi|385775092|ref|YP_005647660.1| - 8.2e-40 136.5 33.7 1e-39 136.2 23.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) HTH_11 PF08279.7 gi|385775093|ref|YP_005647661.1| - 0.0053 16.3 0.5 0.01 15.4 0.4 1.4 1 0 0 1 1 1 1 HTH domain DAO PF01266.19 gi|385775094|ref|YP_005647662.1| - 3.2e-15 55.8 0.0 1.6e-06 27.3 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|385775094|ref|YP_005647662.1| - 3.9e-11 42.8 0.0 1.9e-10 40.6 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|385775094|ref|YP_005647662.1| - 8.7e-10 38.0 1.5 2.8e-05 23.1 0.1 2.6 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|385775094|ref|YP_005647662.1| - 3e-09 36.3 2.2 2.3e-07 30.1 0.0 2.5 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|385775094|ref|YP_005647662.1| - 8.6e-09 35.6 2.0 0.0066 16.8 0.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385775094|ref|YP_005647662.1| - 1.9e-08 33.1 1.0 5.2e-05 21.8 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Amino_oxidase PF01593.19 gi|385775094|ref|YP_005647662.1| - 1e-06 28.1 0.1 6.1e-06 25.5 0.0 2.2 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.9 gi|385775094|ref|YP_005647662.1| - 2.1e-06 27.7 0.1 1.6e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385775094|ref|YP_005647662.1| - 7.5e-06 25.2 0.1 6.8e-05 22.0 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|385775094|ref|YP_005647662.1| - 1.2e-05 24.4 4.0 0.00075 18.4 0.0 2.5 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|385775094|ref|YP_005647662.1| - 4.8e-05 23.4 0.1 0.00027 21.0 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|385775094|ref|YP_005647662.1| - 7.3e-05 22.0 0.4 0.00029 20.0 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GDI PF00996.13 gi|385775094|ref|YP_005647662.1| - 0.00022 19.7 0.5 0.12 10.7 0.0 2.6 2 0 0 2 2 2 2 GDP dissociation inhibitor Lycopene_cycl PF05834.7 gi|385775094|ref|YP_005647662.1| - 0.0031 16.4 0.0 0.026 13.4 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|385775094|ref|YP_005647662.1| - 0.02 14.0 0.4 0.33 10.0 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|385775094|ref|YP_005647662.1| - 0.023 14.1 0.1 0.055 12.8 0.1 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|385775094|ref|YP_005647662.1| - 0.049 13.3 0.2 8.4 6.1 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding DUF488 PF04343.8 gi|385775095|ref|YP_005647663.1| - 2.9e-29 101.9 0.0 3.9e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Pyr_redox PF00070.22 gi|385775095|ref|YP_005647663.1| - 0.077 13.4 0.1 0.75 10.2 0.0 2.5 2 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Amidohydro_2 PF04909.9 gi|385775096|ref|YP_005647664.1| - 1.2e-52 179.1 0.2 1.4e-52 178.9 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase CHAD PF05235.9 gi|385775097|ref|YP_005647665.1| - 3.5e-07 30.0 0.0 0.023 14.2 0.0 2.2 1 1 0 2 2 2 2 CHAD domain Thymidylate_kin PF02223.12 gi|385775098|ref|YP_005647666.1| - 1.7e-13 50.3 0.0 2.5e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|385775098|ref|YP_005647666.1| - 0.01 16.1 0.3 0.034 14.4 0.1 2.0 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|385775098|ref|YP_005647666.1| - 0.011 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385775098|ref|YP_005647666.1| - 0.049 13.3 0.0 0.095 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|385775098|ref|YP_005647666.1| - 0.056 14.2 2.5 1.2 9.9 1.8 2.3 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|385775099|ref|YP_005647667.1| - 4.2e-29 101.2 0.0 1.3e-28 99.5 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|385775099|ref|YP_005647667.1| - 6.5e-05 23.2 0.1 0.00031 21.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|385775099|ref|YP_005647667.1| - 0.0005 20.0 0.1 0.00083 19.2 0.0 1.5 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.1 gi|385775099|ref|YP_005647667.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Ppx-GppA PF02541.11 gi|385775100|ref|YP_005647668.1| - 2.9e-38 131.6 0.5 4.3e-38 131.1 0.4 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.1 gi|385775100|ref|YP_005647668.1| - 0.07 12.9 0.1 0.07 12.9 0.0 2.2 2 1 0 2 2 2 0 Cell division protein FtsA His_Phos_1 PF00300.17 gi|385775101|ref|YP_005647669.1| - 8.5e-15 55.1 0.0 2.4e-13 50.4 0.0 2.0 1 1 1 2 2 2 2 Histidine phosphatase superfamily (branch 1) TPP_enzyme_C PF02775.16 gi|385775102|ref|YP_005647670.1| - 4.2e-19 68.6 0.0 8.1e-19 67.6 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|385775102|ref|YP_005647670.1| - 0.0074 15.2 0.0 0.014 14.3 0.0 1.4 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|385775102|ref|YP_005647670.1| - 0.048 12.3 0.0 0.048 12.3 0.0 1.7 2 0 0 2 2 2 0 Dehydrogenase E1 component POR_N PF01855.14 gi|385775103|ref|YP_005647671.1| - 1.1e-70 237.8 1.5 1.4e-70 237.4 1.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|385775103|ref|YP_005647671.1| - 4.8e-06 26.5 0.0 1.2e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|385775103|ref|YP_005647671.1| - 0.035 13.5 0.3 0.07 12.6 0.2 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|385775104|ref|YP_005647672.1| - 5.1e-15 54.3 17.2 6.9e-08 31.7 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385775104|ref|YP_005647672.1| - 1.7e-12 46.9 22.3 2.9e-09 36.5 8.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385775104|ref|YP_005647672.1| - 1e-11 44.1 15.6 4e-06 26.4 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385775104|ref|YP_005647672.1| - 3.8e-11 42.2 13.5 4.4e-06 26.3 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385775104|ref|YP_005647672.1| - 6.3e-11 42.4 9.8 9.7e-11 41.8 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385775104|ref|YP_005647672.1| - 5.3e-10 38.9 10.1 9.7e-10 38.1 7.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385775104|ref|YP_005647672.1| - 9.2e-09 35.9 6.6 0.00036 21.2 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|385775104|ref|YP_005647672.1| - 1.4e-08 34.8 11.3 2e-08 34.3 7.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385775104|ref|YP_005647672.1| - 4.4e-07 29.6 13.5 0.0015 18.6 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|385775104|ref|YP_005647672.1| - 5.7e-07 29.4 6.0 0.0042 17.0 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385775104|ref|YP_005647672.1| - 2.3e-05 24.8 8.3 0.012 16.1 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|385775104|ref|YP_005647672.1| - 0.00017 21.8 12.3 0.0058 16.9 1.2 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385775104|ref|YP_005647672.1| - 0.00053 20.3 10.9 0.05 14.0 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|385775104|ref|YP_005647672.1| - 0.0043 17.5 19.2 0.13 12.9 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385775104|ref|YP_005647672.1| - 0.0065 16.8 14.2 0.076 13.4 2.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain POR PF01558.13 gi|385775105|ref|YP_005647673.1| - 6.9e-37 126.9 0.0 8.2e-37 126.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Ald_Xan_dh_C PF01315.17 gi|385775106|ref|YP_005647674.1| - 8.3e-05 22.6 0.0 9.2e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FliD_C PF07195.7 gi|385775107|ref|YP_005647675.1| - 4.6e-05 22.8 3.2 4.6e-05 22.8 2.2 1.5 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus FH2 PF02181.18 gi|385775107|ref|YP_005647675.1| - 0.00015 20.7 5.4 0.00018 20.5 3.7 1.1 1 0 0 1 1 1 1 Formin Homology 2 Domain Zwint PF15556.1 gi|385775107|ref|YP_005647675.1| - 0.0012 18.2 2.4 0.0014 17.9 1.7 1.2 1 0 0 1 1 1 1 ZW10 interactor Prefoldin PF02996.12 gi|385775107|ref|YP_005647675.1| - 0.008 15.8 6.3 0.008 15.8 4.3 2.0 2 0 0 2 2 2 1 Prefoldin subunit AAA_13 PF13166.1 gi|385775107|ref|YP_005647675.1| - 0.014 13.9 7.2 0.016 13.6 5.0 1.2 1 0 0 1 1 1 0 AAA domain GBP_C PF02841.9 gi|385775107|ref|YP_005647675.1| - 0.015 14.4 4.2 0.018 14.2 2.9 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain AATF-Che1 PF13339.1 gi|385775107|ref|YP_005647675.1| - 0.015 15.4 2.8 0.015 15.4 1.9 1.6 2 0 0 2 2 1 0 Apoptosis antagonizing transcription factor V_ATPase_I PF01496.14 gi|385775107|ref|YP_005647675.1| - 0.017 13.0 2.4 0.017 13.0 1.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Prefoldin_2 PF01920.15 gi|385775107|ref|YP_005647675.1| - 0.021 14.5 14.5 0.037 13.7 10.0 1.6 1 1 0 1 1 1 0 Prefoldin subunit DUF16 PF01519.11 gi|385775107|ref|YP_005647675.1| - 0.022 14.9 7.5 0.022 14.9 5.2 1.8 1 1 1 2 2 2 0 Protein of unknown function DUF16 CDC37_N PF03234.9 gi|385775107|ref|YP_005647675.1| - 0.031 14.6 6.0 0.039 14.2 4.2 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Gemin6 PF06372.7 gi|385775107|ref|YP_005647675.1| - 0.034 13.4 0.6 0.044 13.1 0.4 1.2 1 0 0 1 1 1 0 Gemin6 protein Baculo_PEP_C PF04513.7 gi|385775107|ref|YP_005647675.1| - 0.035 13.9 0.8 0.035 13.9 0.6 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HR1 PF02185.11 gi|385775107|ref|YP_005647675.1| - 0.044 13.5 8.6 0.087 12.5 3.0 2.4 2 0 0 2 2 2 0 Hr1 repeat MCLC PF05934.6 gi|385775107|ref|YP_005647675.1| - 0.045 12.0 0.9 0.046 12.0 0.6 1.1 1 0 0 1 1 1 0 Mid-1-related chloride channel (MCLC) MutS_IV PF05190.13 gi|385775107|ref|YP_005647675.1| - 0.048 13.8 4.3 0.048 13.8 3.0 2.7 2 2 1 3 3 3 0 MutS family domain IV HisKA_3 PF07730.8 gi|385775107|ref|YP_005647675.1| - 0.056 13.8 0.2 0.21 11.9 0.0 2.1 1 1 1 2 2 1 0 Histidine kinase IncA PF04156.9 gi|385775107|ref|YP_005647675.1| - 0.063 12.8 12.7 0.26 10.8 7.4 1.9 1 1 1 2 2 2 0 IncA protein Bacillus_HBL PF05791.6 gi|385775107|ref|YP_005647675.1| - 0.065 12.6 6.6 0.14 11.4 1.6 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF607 PF04678.8 gi|385775107|ref|YP_005647675.1| - 0.068 13.0 1.0 0.081 12.8 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF607 KfrA_N PF11740.3 gi|385775107|ref|YP_005647675.1| - 0.072 13.5 2.7 0.13 12.7 1.9 1.4 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term DUF2120 PF09893.4 gi|385775107|ref|YP_005647675.1| - 0.082 12.8 5.1 0.12 12.2 3.6 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) AAA_32 PF13654.1 gi|385775107|ref|YP_005647675.1| - 0.1 11.2 8.6 1.4 7.4 4.5 2.0 1 1 1 2 2 2 0 AAA domain APG6 PF04111.7 gi|385775107|ref|YP_005647675.1| - 0.1 11.6 6.9 0.12 11.4 4.8 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF3482 PF11981.3 gi|385775107|ref|YP_005647675.1| - 0.12 11.5 0.9 0.15 11.2 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) NTP_transf_4 PF13562.1 gi|385775107|ref|YP_005647675.1| - 0.14 11.8 2.8 0.27 10.8 1.9 1.6 1 1 0 1 1 1 0 Sugar nucleotidyl transferase Hemagglutinin PF00509.13 gi|385775107|ref|YP_005647675.1| - 0.15 10.1 2.8 0.23 9.5 2.0 1.3 1 0 0 1 1 1 0 Haemagglutinin T_Ag_DNA_bind PF02217.11 gi|385775107|ref|YP_005647675.1| - 0.16 12.3 2.1 0.38 11.1 0.1 2.4 1 1 1 2 2 2 0 Origin of replication binding protein Cortex-I_coil PF09304.5 gi|385775107|ref|YP_005647675.1| - 0.18 11.8 11.3 0.24 11.4 7.4 1.6 1 1 0 1 1 1 0 Cortexillin I, coiled coil DUF4259 PF14078.1 gi|385775107|ref|YP_005647675.1| - 0.21 12.0 4.6 0.45 10.9 3.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4259) FemAB PF02388.11 gi|385775107|ref|YP_005647675.1| - 0.21 10.2 3.4 0.26 9.9 2.3 1.2 1 0 0 1 1 1 0 FemAB family DUF148 PF02520.12 gi|385775107|ref|YP_005647675.1| - 0.23 11.2 4.6 0.36 10.6 3.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF148 DUF948 PF06103.6 gi|385775107|ref|YP_005647675.1| - 0.24 11.2 6.1 0.087 12.6 1.9 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Glyco_hydro_4C PF11975.3 gi|385775107|ref|YP_005647675.1| - 0.26 11.0 5.1 0.38 10.5 3.5 1.3 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Syntaxin-6_N PF09177.6 gi|385775107|ref|YP_005647675.1| - 0.28 11.6 6.8 1.5 9.2 3.8 2.5 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Phage_GPO PF05929.6 gi|385775107|ref|YP_005647675.1| - 0.29 10.3 3.7 0.38 9.9 2.6 1.3 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Syntaxin_2 PF14523.1 gi|385775107|ref|YP_005647675.1| - 0.39 10.7 11.6 0.64 10.0 3.9 2.3 1 1 1 2 2 2 0 Syntaxin-like protein TFIIA_gamma_N PF02268.11 gi|385775107|ref|YP_005647675.1| - 0.4 10.3 2.8 10 5.7 0.0 3.0 3 0 0 3 3 3 0 Transcription initiation factor IIA, gamma subunit, helical domain Transposase_22 PF02994.9 gi|385775107|ref|YP_005647675.1| - 0.42 9.0 12.2 0.55 8.6 8.5 1.3 1 1 0 1 1 1 0 L1 transposable element 2-oxoacid_dh PF00198.18 gi|385775107|ref|YP_005647675.1| - 0.42 9.8 2.0 31 3.7 0.2 2.8 1 1 2 3 3 3 0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UPF0449 PF15136.1 gi|385775107|ref|YP_005647675.1| - 0.51 10.5 7.4 0.75 10.0 2.4 2.5 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 GST_C_3 PF14497.1 gi|385775107|ref|YP_005647675.1| - 0.56 10.7 2.4 15 6.1 0.0 2.5 1 1 1 2 2 2 0 Glutathione S-transferase, C-terminal domain GP41 PF00517.12 gi|385775107|ref|YP_005647675.1| - 0.61 9.6 4.0 0.93 9.0 0.5 2.1 2 0 0 2 2 2 0 Retroviral envelope protein FlxA PF14282.1 gi|385775107|ref|YP_005647675.1| - 0.61 10.0 5.6 16 5.5 0.0 2.2 1 1 1 2 2 2 0 FlxA-like protein DUF2203 PF09969.4 gi|385775107|ref|YP_005647675.1| - 0.7 10.1 4.6 1.4 9.1 3.2 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Phasin PF05597.6 gi|385775107|ref|YP_005647675.1| - 0.76 9.5 6.9 0.97 9.2 4.5 1.4 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) CR6_interact PF10147.4 gi|385775107|ref|YP_005647675.1| - 0.79 8.9 8.0 1.1 8.5 5.5 1.2 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Laminin_II PF06009.7 gi|385775107|ref|YP_005647675.1| - 0.88 9.3 6.5 0.52 10.0 2.4 1.9 1 1 0 2 2 2 0 Laminin Domain II ACCA PF03255.9 gi|385775107|ref|YP_005647675.1| - 0.9 9.0 7.8 0.73 9.3 4.1 1.7 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AAA_23 PF13476.1 gi|385775107|ref|YP_005647675.1| - 0.91 9.8 12.7 1.1 9.5 8.8 1.1 1 0 0 1 1 1 0 AAA domain ArsC PF03960.10 gi|385775107|ref|YP_005647675.1| - 0.96 9.5 8.6 0.56 10.2 3.3 2.1 1 1 0 2 2 2 0 ArsC family OmpH PF03938.9 gi|385775107|ref|YP_005647675.1| - 0.97 9.3 6.5 1.1 9.2 3.8 1.6 1 1 1 2 2 1 0 Outer membrane protein (OmpH-like) Rootletin PF15035.1 gi|385775107|ref|YP_005647675.1| - 1 9.3 8.4 1.5 8.7 5.8 1.3 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion MtrG PF04210.8 gi|385775107|ref|YP_005647675.1| - 1 9.0 6.5 5 6.8 1.3 2.6 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G PIN_2 PF10130.4 gi|385775107|ref|YP_005647675.1| - 1.1 9.2 5.3 1.4 9.0 2.1 1.9 1 1 1 2 2 2 0 PIN domain DUF1664 PF07889.7 gi|385775107|ref|YP_005647675.1| - 1.2 8.9 5.9 1.1 9.0 3.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|385775107|ref|YP_005647675.1| - 1.2 7.9 6.9 1.3 7.8 4.2 1.3 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CHD5 PF04420.9 gi|385775107|ref|YP_005647675.1| - 1.4 8.5 5.8 0.92 9.1 2.1 2.0 1 1 1 2 2 2 0 CHD5-like protein Iron_permease PF04120.7 gi|385775107|ref|YP_005647675.1| - 1.6 8.2 8.1 0.76 9.3 1.5 2.1 1 1 1 2 2 2 0 Low affinity iron permease Nsp1_C PF05064.8 gi|385775107|ref|YP_005647675.1| - 1.7 8.2 9.8 3.9 7.1 6.4 1.9 1 1 1 2 2 2 0 Nsp1-like C-terminal region PCRF PF03462.13 gi|385775107|ref|YP_005647675.1| - 2.5 7.8 6.5 1.3 8.7 2.7 1.8 2 0 0 2 2 2 0 PCRF domain NPV_P10 PF05531.7 gi|385775107|ref|YP_005647675.1| - 2.8 8.2 5.5 3.1 8.0 2.2 2.3 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein DUF342 PF03961.8 gi|385775107|ref|YP_005647675.1| - 2.9 6.2 12.0 20 3.4 8.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF342) CorA PF01544.13 gi|385775107|ref|YP_005647675.1| - 3.1 6.7 8.6 6.4 5.7 3.1 2.3 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein Ribosomal_L29 PF00831.18 gi|385775107|ref|YP_005647675.1| - 3.7 7.3 12.8 1.5 8.5 6.2 2.3 1 1 1 2 2 2 0 Ribosomal L29 protein V-SNARE PF05008.10 gi|385775107|ref|YP_005647675.1| - 3.7 7.7 9.9 23 5.2 5.3 2.9 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus TMPIT PF07851.8 gi|385775107|ref|YP_005647675.1| - 4.3 6.3 7.9 3.3 6.6 3.4 1.8 1 1 0 2 2 2 0 TMPIT-like protein DUF848 PF05852.6 gi|385775107|ref|YP_005647675.1| - 4.7 7.0 9.9 9.5 6.0 6.6 1.7 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) RBD-FIP PF09457.5 gi|385775107|ref|YP_005647675.1| - 7.4 6.4 13.4 1.4 8.8 5.9 2.4 2 1 1 3 3 2 0 FIP domain CENP-Q PF13094.1 gi|385775107|ref|YP_005647675.1| - 8 6.4 12.9 6.8 6.7 7.2 1.8 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2951 PF11166.3 gi|385775107|ref|YP_005647675.1| - 9.9 6.0 11.0 65 3.4 7.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) FAD_binding_4 PF01565.18 gi|385775109|ref|YP_005647677.1| - 5e-45 152.3 0.0 1.4e-44 150.9 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain FAD-oxidase_C PF02913.14 gi|385775109|ref|YP_005647677.1| - 2.2e-40 138.5 0.1 3.5e-40 137.8 0.1 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain PIN PF01850.16 gi|385775110|ref|YP_005647678.1| - 1.1e-11 45.1 0.3 1.3e-11 44.8 0.2 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|385775111|ref|YP_005647679.1| - 0.00063 19.4 0.7 0.0014 18.3 0.5 1.6 1 1 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|385775111|ref|YP_005647679.1| - 0.0042 16.8 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 MraZ protein PHBC_N PF12551.3 gi|385775112|ref|YP_005647680.1| - 0.025 14.1 1.7 2.5 7.6 0.0 2.3 2 1 0 2 2 2 0 Poly-beta-hydroxybutyrate polymerase N terminal Aldedh PF00171.17 gi|385775113|ref|YP_005647681.1| - 3.4e-140 467.4 0.0 3.9e-140 467.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|385775113|ref|YP_005647681.1| - 0.0015 17.3 0.0 0.0022 16.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Syntaxin-6_N PF09177.6 gi|385775113|ref|YP_005647681.1| - 0.0019 18.5 0.4 0.014 15.8 0.2 2.3 2 1 0 2 2 2 1 Syntaxin 6, N-terminal Enkurin PF13864.1 gi|385775113|ref|YP_005647681.1| - 0.078 13.1 0.5 0.2 11.8 0.1 1.9 2 0 0 2 2 2 0 Calmodulin-binding HTH_10 PF04967.7 gi|385775114|ref|YP_005647682.1| - 5.1e-21 74.0 0.1 8.5e-21 73.2 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Swi5 PF07061.6 gi|385775114|ref|YP_005647682.1| - 0.032 13.9 0.3 0.078 12.7 0.2 1.6 1 0 0 1 1 1 0 Swi5 HTH_24 PF13412.1 gi|385775114|ref|YP_005647682.1| - 0.053 12.9 0.1 0.16 11.3 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ADH_N PF08240.7 gi|385775115|ref|YP_005647683.1| - 2.4e-31 107.7 1.0 2.4e-31 107.7 0.7 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385775115|ref|YP_005647683.1| - 2.3e-19 69.2 0.7 4e-19 68.4 0.0 1.8 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385775115|ref|YP_005647683.1| - 2e-07 31.9 0.0 6e-07 30.4 0.0 1.8 1 1 1 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|385775115|ref|YP_005647683.1| - 0.00024 20.6 0.1 0.00049 19.7 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain MreC PF04085.9 gi|385775115|ref|YP_005647683.1| - 0.00084 18.7 0.1 0.0052 16.2 0.0 2.1 2 0 0 2 2 2 1 rod shape-determining protein MreC 3HCDH_N PF02737.13 gi|385775115|ref|YP_005647683.1| - 0.0027 17.3 0.3 0.0041 16.7 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|385775115|ref|YP_005647683.1| - 0.0034 17.4 0.1 0.0066 16.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Methyltransf_18 PF12847.2 gi|385775115|ref|YP_005647683.1| - 0.0069 16.9 0.0 0.012 16.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain YajC PF02699.10 gi|385775115|ref|YP_005647683.1| - 0.0074 15.9 1.1 0.53 10.0 0.2 2.4 2 0 0 2 2 2 1 Preprotein translocase subunit Methyltransf_31 PF13847.1 gi|385775115|ref|YP_005647683.1| - 0.018 14.6 0.1 0.086 12.4 0.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.14 gi|385775115|ref|YP_005647683.1| - 0.025 13.7 0.1 0.04 13.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Urocanase PF01175.13 gi|385775115|ref|YP_005647683.1| - 0.036 12.1 0.0 0.054 11.5 0.0 1.3 1 0 0 1 1 1 0 Urocanase YjeF_N PF03853.10 gi|385775115|ref|YP_005647683.1| - 0.063 12.8 0.1 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 YjeF-related protein N-terminus Met_10 PF02475.11 gi|385775115|ref|YP_005647683.1| - 0.11 12.0 0.3 0.33 10.5 0.1 2.0 2 1 0 2 2 2 0 Met-10+ like-protein ADC PF06314.6 gi|385775116|ref|YP_005647684.1| - 1.3e-57 194.8 0.0 1.7e-57 194.5 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Glyoxalase PF00903.20 gi|385775117|ref|YP_005647685.1| - 4.5e-15 55.7 0.0 1e-09 38.4 0.0 2.9 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|385775117|ref|YP_005647685.1| - 8.7e-06 26.3 0.0 0.0035 17.9 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain SnoaL PF07366.7 gi|385775117|ref|YP_005647685.1| - 0.048 13.2 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase DUF336 PF03928.9 gi|385775118|ref|YP_005647686.1| - 4.8e-47 159.0 0.0 5.7e-47 158.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF336) Diacid_rec PF05651.8 gi|385775118|ref|YP_005647686.1| - 0.035 13.5 1.2 0.066 12.6 0.2 1.8 2 0 0 2 2 2 0 Putative sugar diacid recognition Pyr_redox_2 PF07992.9 gi|385775119|ref|YP_005647687.1| - 1.9e-36 125.8 0.1 2.7e-35 122.0 0.1 3.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385775119|ref|YP_005647687.1| - 2.8e-19 69.2 2.5 1e-16 61.0 0.1 3.6 5 0 0 5 5 4 1 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.1 gi|385775119|ref|YP_005647687.1| - 1.2e-15 57.5 0.0 2.2e-15 56.6 0.0 1.5 1 0 0 1 1 1 1 Reductase C-terminal Pyr_redox_3 PF13738.1 gi|385775119|ref|YP_005647687.1| - 1.7e-08 34.7 0.0 0.00021 21.4 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385775119|ref|YP_005647687.1| - 7.2e-05 21.8 0.4 0.11 11.3 1.1 3.4 3 1 1 4 4 4 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|385775119|ref|YP_005647687.1| - 0.00017 21.3 0.1 2.1 8.0 0.0 3.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|385775119|ref|YP_005647687.1| - 0.0004 20.4 3.4 0.021 14.8 0.5 3.5 3 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|385775119|ref|YP_005647687.1| - 0.0028 17.8 0.0 0.45 10.7 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|385775119|ref|YP_005647687.1| - 0.0031 16.6 0.0 0.047 12.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain TrkA_N PF02254.13 gi|385775119|ref|YP_005647687.1| - 0.0047 16.9 0.1 1.3 9.0 0.1 2.5 2 0 0 2 2 2 1 TrkA-N domain ThiF PF00899.16 gi|385775119|ref|YP_005647687.1| - 0.0047 16.7 0.0 0.19 11.5 0.1 2.6 2 0 0 2 2 2 1 ThiF family GIDA PF01134.17 gi|385775119|ref|YP_005647687.1| - 0.0052 15.7 0.2 2 7.1 0.5 3.5 3 1 2 5 5 5 1 Glucose inhibited division protein A CPSase_L_chain PF00289.17 gi|385775119|ref|YP_005647687.1| - 0.0067 16.5 0.0 0.18 11.8 0.0 2.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_8 PF13450.1 gi|385775119|ref|YP_005647687.1| - 0.013 15.4 0.1 1.8 8.6 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|385775119|ref|YP_005647687.1| - 0.016 14.1 0.0 5.8 5.6 0.0 3.0 3 0 0 3 3 3 0 FAD binding domain DUF1188 PF06690.6 gi|385775119|ref|YP_005647687.1| - 0.017 14.2 0.0 0.037 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) 2-Hacid_dh_C PF02826.14 gi|385775119|ref|YP_005647687.1| - 0.019 14.1 0.0 0.047 12.8 0.0 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|385775119|ref|YP_005647687.1| - 0.03 13.8 0.1 8.8 5.8 0.0 2.9 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|385775119|ref|YP_005647687.1| - 0.046 13.3 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|385775119|ref|YP_005647687.1| - 0.053 12.4 0.0 3.5 6.4 0.0 2.5 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|385775119|ref|YP_005647687.1| - 0.069 12.5 0.2 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Phenol_Hydrox PF02332.13 gi|385775121|ref|YP_005647689.1| - 1e-56 191.8 0.6 1.2e-56 191.6 0.4 1.0 1 0 0 1 1 1 1 Methane/Phenol/Toluene Hydroxylase YHS PF04945.8 gi|385775122|ref|YP_005647690.1| - 1e-15 57.2 0.0 1.9e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 YHS domain Rieske PF00355.21 gi|385775124|ref|YP_005647692.1| - 7.7e-12 44.6 0.0 8.9e-12 44.4 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|385775124|ref|YP_005647692.1| - 2.7e-06 27.0 0.0 5e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain MmoB_DmpM PF02406.12 gi|385775125|ref|YP_005647693.1| - 6e-23 80.6 0.0 7.3e-23 80.3 0.0 1.1 1 0 0 1 1 1 1 MmoB/DmpM family Phenol_Hydrox PF02332.13 gi|385775126|ref|YP_005647694.1| - 1.5e-43 148.7 0.7 2.7e-43 147.9 0.5 1.4 1 0 0 1 1 1 1 Methane/Phenol/Toluene Hydroxylase DUF59 PF01883.14 gi|385775127|ref|YP_005647695.1| - 9.6e-13 47.9 0.0 1.6e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF59 TPP_enzyme_N PF02776.13 gi|385775128|ref|YP_005647696.1| - 1.3e-49 167.9 0.0 8.3e-49 165.3 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|385775128|ref|YP_005647696.1| - 5.9e-33 113.6 0.0 5.4e-31 107.2 0.0 3.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|385775128|ref|YP_005647696.1| - 7.1e-33 113.2 0.0 1.2e-32 112.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain FIST_C PF10442.4 gi|385775128|ref|YP_005647696.1| - 0.022 14.6 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 FIST C domain XFP_N PF09364.5 gi|385775128|ref|YP_005647696.1| - 0.053 12.0 0.0 0.086 11.3 0.0 1.3 1 0 0 1 1 1 0 XFP N-terminal domain Rieske PF00355.21 gi|385775129|ref|YP_005647697.1| - 3.9e-09 35.9 0.0 7.1e-09 35.1 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|385775129|ref|YP_005647697.1| - 2e-08 33.8 0.0 5.5e-08 32.4 0.0 1.7 2 0 0 2 2 2 1 Rieske-like [2Fe-2S] domain Rep_fac_C PF08542.6 gi|385775129|ref|YP_005647697.1| - 0.12 12.3 0.8 7 6.7 0.0 2.6 2 0 0 2 2 2 0 Replication factor C C-terminal domain Pirin PF02678.11 gi|385775130|ref|YP_005647698.1| - 4.4e-37 126.2 0.0 1.9e-36 124.2 0.0 1.9 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.8 gi|385775130|ref|YP_005647698.1| - 2.3e-26 91.8 0.0 1.1e-25 89.6 0.0 1.9 2 0 0 2 2 2 1 Pirin C-terminal cupin domain OrfB_Zn_ribbon PF07282.6 gi|385775131|ref|YP_005647699.1| - 1e-15 57.1 0.3 1.2e-15 56.9 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|385775131|ref|YP_005647699.1| - 8.3e-05 21.9 5.0 0.00077 18.8 3.7 2.0 1 1 1 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385775131|ref|YP_005647699.1| - 0.00013 20.9 0.7 0.048 12.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|385775131|ref|YP_005647699.1| - 0.00071 19.3 0.6 0.001 18.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon C1_1 PF00130.17 gi|385775131|ref|YP_005647699.1| - 0.0041 16.8 0.2 0.0046 16.6 0.1 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) CpXC PF14353.1 gi|385775131|ref|YP_005647699.1| - 0.0047 16.8 0.2 1.6 8.6 0.1 2.1 1 1 1 2 2 2 1 CpXC protein Rep_fac-A_C PF08646.5 gi|385775131|ref|YP_005647699.1| - 0.0053 16.4 0.9 0.0056 16.3 0.6 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain TF_Zn_Ribbon PF08271.7 gi|385775131|ref|YP_005647699.1| - 0.0059 15.9 2.0 0.051 12.8 2.0 1.9 1 1 1 2 2 2 2 TFIIB zinc-binding zinc-ribbons_6 PF07191.7 gi|385775131|ref|YP_005647699.1| - 0.022 14.5 0.4 0.03 14.1 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbons DUF2387 PF09526.5 gi|385775131|ref|YP_005647699.1| - 0.026 14.4 1.6 0.061 13.2 1.1 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) HypA PF01155.14 gi|385775131|ref|YP_005647699.1| - 0.049 13.3 0.2 0.064 12.9 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Cys_rich_CPCC PF14206.1 gi|385775131|ref|YP_005647699.1| - 0.05 13.1 0.1 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC Zn-ribbon_8 PF09723.5 gi|385775131|ref|YP_005647699.1| - 0.051 13.5 4.0 0.42 10.6 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|385775131|ref|YP_005647699.1| - 0.052 13.5 1.3 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Cript PF10235.4 gi|385775131|ref|YP_005647699.1| - 0.054 13.8 0.8 0.069 13.5 0.6 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Sgf11 PF08209.6 gi|385775131|ref|YP_005647699.1| - 0.062 12.6 2.8 0.17 11.2 0.1 2.1 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.1 gi|385775131|ref|YP_005647699.1| - 0.07 12.8 1.8 0.93 9.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385775131|ref|YP_005647699.1| - 0.08 12.5 1.8 0.93 9.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ZPR1 PF03367.8 gi|385775131|ref|YP_005647699.1| - 0.081 12.0 1.3 3.7 6.6 0.8 2.0 1 1 1 2 2 2 0 ZPR1 zinc-finger domain DUF2389 PF09493.5 gi|385775131|ref|YP_005647699.1| - 0.092 13.0 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Tryptophan-rich protein (DUF2389) Ribosomal_L32p PF01783.18 gi|385775131|ref|YP_005647699.1| - 0.099 12.8 2.4 0.42 10.8 1.7 1.9 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-ISL3 PF14690.1 gi|385775131|ref|YP_005647699.1| - 0.1 12.6 5.8 0.35 10.9 0.8 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2614 PF11023.3 gi|385775131|ref|YP_005647699.1| - 0.1 12.3 0.3 0.12 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) Prok-RING_1 PF14446.1 gi|385775131|ref|YP_005647699.1| - 0.12 12.1 2.4 0.22 11.2 1.4 1.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 YhfH PF14149.1 gi|385775131|ref|YP_005647699.1| - 0.13 12.0 5.8 0.94 9.3 3.6 2.1 1 1 1 2 2 2 0 YhfH-like protein DUF1610 PF07754.6 gi|385775131|ref|YP_005647699.1| - 0.15 12.2 6.0 0.59 10.3 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.6 gi|385775131|ref|YP_005647699.1| - 0.18 11.3 1.0 1.9 8.0 0.7 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.1 gi|385775131|ref|YP_005647699.1| - 0.22 11.8 2.9 1.3 9.4 2.0 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|385775131|ref|YP_005647699.1| - 0.28 10.8 5.1 6.2 6.5 0.4 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|385775131|ref|YP_005647699.1| - 0.31 10.7 3.2 2.8 7.6 2.2 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-HYPF PF07503.7 gi|385775131|ref|YP_005647699.1| - 0.37 10.2 4.6 1.1 8.7 0.2 2.4 1 1 1 2 2 2 0 HypF finger zf-C2HC_2 PF13913.1 gi|385775131|ref|YP_005647699.1| - 0.41 10.3 4.3 0.43 10.3 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-TFIIB PF13453.1 gi|385775131|ref|YP_005647699.1| - 0.45 9.7 2.9 1.3 8.2 2.0 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|385775131|ref|YP_005647699.1| - 0.75 9.6 4.6 2.2 8.1 3.3 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF329 PF03884.9 gi|385775131|ref|YP_005647699.1| - 0.88 9.1 2.9 1.7 8.2 2.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF329) DUF2082 PF09855.4 gi|385775131|ref|YP_005647699.1| - 0.94 9.3 6.5 6.4 6.7 0.2 2.2 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-H2C2_2 PF13465.1 gi|385775131|ref|YP_005647699.1| - 2.7 8.4 5.2 6.6 7.2 0.4 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-tcix PF14952.1 gi|385775131|ref|YP_005647699.1| - 6.8 6.1 7.4 17 4.8 0.4 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding MFS_1 PF07690.11 gi|385775132|ref|YP_005647700.1| - 8.5e-27 93.7 51.2 1.9e-17 63.0 18.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775132|ref|YP_005647700.1| - 1.9e-21 76.2 37.7 3.8e-18 65.3 8.9 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter Imm_superinfect PF14373.1 gi|385775132|ref|YP_005647700.1| - 0.014 14.9 2.5 0.13 11.8 0.1 3.2 3 0 0 3 3 3 0 Superinfection immunity protein ECH PF00378.15 gi|385775133|ref|YP_005647701.1| - 4.9e-47 160.1 0.0 5.7e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ADH_N PF08240.7 gi|385775134|ref|YP_005647702.1| - 1.2e-34 118.2 0.2 2.1e-34 117.5 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385775134|ref|YP_005647702.1| - 6.2e-29 100.1 0.4 6.2e-29 100.1 0.3 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385775134|ref|YP_005647702.1| - 1.4e-13 51.8 0.2 2.7e-13 50.9 0.0 1.6 2 0 0 2 2 1 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.2 gi|385775134|ref|YP_005647702.1| - 1.1e-05 25.9 0.0 2.1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385775134|ref|YP_005647702.1| - 1.2e-05 24.9 0.0 2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DapB_N PF01113.15 gi|385775134|ref|YP_005647702.1| - 0.002 18.0 0.6 0.0039 17.1 0.4 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus MTS PF05175.9 gi|385775134|ref|YP_005647702.1| - 0.0045 16.3 0.2 0.0086 15.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|385775134|ref|YP_005647702.1| - 0.0073 16.6 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385775134|ref|YP_005647702.1| - 0.0084 16.5 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385775134|ref|YP_005647702.1| - 0.0089 16.4 0.0 0.018 15.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|385775134|ref|YP_005647702.1| - 0.013 14.5 0.0 0.023 13.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|385775134|ref|YP_005647702.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385775134|ref|YP_005647702.1| - 0.021 14.8 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|385775134|ref|YP_005647702.1| - 0.025 14.5 0.2 0.055 13.4 0.2 1.6 1 0 0 1 1 1 0 TrkA-N domain Eno-Rase_NADH_b PF12242.3 gi|385775134|ref|YP_005647702.1| - 0.059 13.1 0.4 0.13 12.0 0.3 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Methyltransf_2 PF00891.13 gi|385775134|ref|YP_005647702.1| - 0.089 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PEPCK PF00821.13 gi|385775135|ref|YP_005647703.1| - 1.9e-196 653.7 0.0 2.2e-196 653.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Glycos_transf_1 PF00534.15 gi|385775136|ref|YP_005647704.1| - 3.4e-13 49.3 0.0 5.9e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phosphorylase PF00343.15 gi|385775136|ref|YP_005647704.1| - 1.5e-07 29.7 0.0 1.5e-06 26.4 0.0 2.0 2 0 0 2 2 2 1 Carbohydrate phosphorylase Glyco_trans_1_4 PF13692.1 gi|385775136|ref|YP_005647704.1| - 0.0036 17.4 0.0 0.007 16.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Aldedh PF00171.17 gi|385775138|ref|YP_005647706.1| - 8.4e-130 433.1 0.0 1.2e-129 432.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|385775138|ref|YP_005647706.1| - 1.4e-07 30.6 0.0 2.4e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) PIN PF01850.16 gi|385775139|ref|YP_005647707.1| - 1.5e-08 35.0 0.7 1.6e-08 34.8 0.5 1.1 1 0 0 1 1 1 1 PIN domain GnsAB PF08178.6 gi|385775140|ref|YP_005647708.1| - 0.12 12.0 4.3 0.21 11.2 2.9 1.5 1 1 0 1 1 1 0 GnsA/GnsB family DUF1104 PF06518.6 gi|385775140|ref|YP_005647708.1| - 0.14 12.2 2.1 0.17 12.0 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1104) Histone_HNS PF00816.16 gi|385775140|ref|YP_005647708.1| - 0.19 12.2 1.6 0.37 11.3 1.1 1.5 1 1 0 1 1 1 0 H-NS histone family PIG-L PF02585.12 gi|385775141|ref|YP_005647709.1| - 5.3e-28 98.0 0.0 6.8e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glycos_transf_1 PF00534.15 gi|385775142|ref|YP_005647710.1| - 3.5e-21 75.3 0.1 7.6e-21 74.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385775142|ref|YP_005647710.1| - 4.1e-13 49.6 0.0 8.4e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385775142|ref|YP_005647710.1| - 0.0021 18.2 0.0 0.0074 16.5 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Macro PF01661.16 gi|385775143|ref|YP_005647711.1| - 4.8e-36 123.2 0.2 8.9e-36 122.3 0.0 1.4 2 0 0 2 2 2 1 Macro domain Macro_2 PF14519.1 gi|385775143|ref|YP_005647711.1| - 0.048 12.7 1.2 0.81 8.7 0.1 2.1 1 1 0 2 2 2 0 Macro-like domain OrfB_IS605 PF01385.14 gi|385775144|ref|YP_005647712.1| - 8.9e-39 133.2 7.4 1.8e-38 132.1 5.2 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775144|ref|YP_005647712.1| - 1.7e-27 94.8 0.3 4.6e-27 93.4 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385775144|ref|YP_005647712.1| - 1.7e-08 33.6 1.1 2.9e-08 32.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|385775144|ref|YP_005647712.1| - 0.021 14.1 0.7 4.3 6.7 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding DUF3543 PF12063.3 gi|385775144|ref|YP_005647712.1| - 0.024 13.8 4.4 0.71 9.0 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3543) zinc_ribbon_2 PF13240.1 gi|385775144|ref|YP_005647712.1| - 0.055 12.9 1.5 7.5 6.1 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|385775144|ref|YP_005647712.1| - 0.077 12.8 0.3 0.14 11.9 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|385775144|ref|YP_005647712.1| - 0.12 12.5 0.4 0.12 12.5 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|385775144|ref|YP_005647712.1| - 0.22 10.8 3.9 6.1 6.1 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Y1_Tnp PF01797.11 gi|385775145|ref|YP_005647713.1| - 1.8e-38 131.1 2.2 2e-38 130.9 1.5 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF1638 PF07796.6 gi|385775145|ref|YP_005647713.1| - 0.08 12.5 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) FBP PF07299.6 gi|385775145|ref|YP_005647713.1| - 0.12 11.7 0.7 0.17 11.2 0.5 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) Arch_ATPase PF01637.13 gi|385775147|ref|YP_005647715.1| - 1.6e-38 132.7 1.0 1.6e-38 132.7 0.7 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|385775147|ref|YP_005647715.1| - 5.1e-11 42.5 3.0 7.4e-09 35.5 0.3 3.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|385775147|ref|YP_005647715.1| - 5.1e-09 36.3 0.0 1.6e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385775147|ref|YP_005647715.1| - 4.9e-05 23.3 0.1 0.00012 22.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF1803 PF08820.5 gi|385775147|ref|YP_005647715.1| - 0.0092 15.6 0.4 0.026 14.2 0.3 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) AAA PF00004.24 gi|385775147|ref|YP_005647715.1| - 0.01 16.0 0.0 0.059 13.5 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_45 PF14947.1 gi|385775147|ref|YP_005647715.1| - 0.016 14.9 2.5 0.61 9.9 0.1 3.6 4 0 0 4 4 4 0 Winged helix-turn-helix PPP4R2 PF09184.6 gi|385775147|ref|YP_005647715.1| - 0.084 12.4 0.3 0.13 11.7 0.2 1.3 1 0 0 1 1 1 0 PPP4R2 DUF1469 PF07332.6 gi|385775148|ref|YP_005647716.1| - 0.36 10.5 4.0 0.48 10.1 2.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF2892 PF11127.3 gi|385775148|ref|YP_005647716.1| - 3.3 7.6 5.6 8.3 6.3 3.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) ABC_tran PF00005.22 gi|385775149|ref|YP_005647717.1| - 1.7e-28 99.5 0.0 2.4e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385775149|ref|YP_005647717.1| - 9.4e-21 73.9 0.0 1.6e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385775149|ref|YP_005647717.1| - 6.2e-06 26.3 1.6 0.0013 18.7 0.3 2.5 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385775149|ref|YP_005647717.1| - 0.0016 17.9 0.0 0.034 13.5 0.0 2.3 1 1 2 3 3 3 1 AAA-like domain SMC_N PF02463.14 gi|385775149|ref|YP_005647717.1| - 0.0023 17.1 0.3 0.012 14.9 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|385775149|ref|YP_005647717.1| - 0.0077 15.1 0.1 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|385775149|ref|YP_005647717.1| - 0.0083 16.2 1.3 0.093 12.8 0.9 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775149|ref|YP_005647717.1| - 0.014 14.9 0.3 0.027 13.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain KaiC PF06745.8 gi|385775149|ref|YP_005647717.1| - 0.031 13.3 0.1 0.055 12.5 0.1 1.4 1 0 0 1 1 1 0 KaiC NB-ARC PF00931.17 gi|385775149|ref|YP_005647717.1| - 0.038 12.8 0.4 0.061 12.1 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.1 gi|385775149|ref|YP_005647717.1| - 0.076 12.9 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|385775150|ref|YP_005647718.1| - 2.9e-25 89.1 0.0 4.2e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385775150|ref|YP_005647718.1| - 5.7e-19 68.2 0.0 9.6e-19 67.5 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385775150|ref|YP_005647718.1| - 1.7e-13 51.1 2.9 2.5e-11 44.0 0.2 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385775150|ref|YP_005647718.1| - 6e-06 25.6 0.2 0.00022 20.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385775150|ref|YP_005647718.1| - 5.3e-05 22.4 3.0 0.004 16.2 0.5 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|385775150|ref|YP_005647718.1| - 0.0068 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|385775150|ref|YP_005647718.1| - 0.0081 16.4 0.3 0.085 13.1 0.1 2.2 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|385775150|ref|YP_005647718.1| - 0.012 15.1 0.1 0.02 14.4 0.1 1.7 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|385775150|ref|YP_005647718.1| - 0.023 14.1 0.0 0.15 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|385775150|ref|YP_005647718.1| - 0.073 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|385775150|ref|YP_005647718.1| - 0.2 12.4 1.0 0.99 10.2 0.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385775150|ref|YP_005647718.1| - 0.54 10.4 4.4 15 5.6 3.1 2.2 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|385775151|ref|YP_005647719.1| - 4.5e-13 49.1 20.1 4.5e-13 49.1 13.9 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385775151|ref|YP_005647719.1| - 0.00022 20.4 1.4 0.00059 19.1 0.3 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|385775152|ref|YP_005647720.1| - 1.5e-36 125.6 13.4 1.5e-36 125.6 9.3 2.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component PGG PF13962.1 gi|385775152|ref|YP_005647720.1| - 0.1 12.2 0.1 0.1 12.2 0.1 3.2 2 1 1 3 3 3 0 Domain of unknown function DUF1230 PF06799.6 gi|385775152|ref|YP_005647720.1| - 8.7 6.2 9.1 17 5.2 0.0 3.7 3 2 1 4 4 4 0 Protein of unknown function (DUF1230) SBP_bac_5 PF00496.17 gi|385775153|ref|YP_005647721.1| - 1.7e-19 69.9 4.0 3.6e-15 55.6 0.6 3.4 3 0 0 3 3 3 3 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1285 PF06938.6 gi|385775153|ref|YP_005647721.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1285) Rifin_STEVOR PF02009.11 gi|385775153|ref|YP_005647721.1| - 0.1 12.2 10.4 0.17 11.5 7.2 1.3 1 0 0 1 1 1 0 Rifin/stevor family DUF871 PF05913.6 gi|385775154|ref|YP_005647722.1| - 5.7e-76 255.6 0.1 6.4e-76 255.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF871) tRNA_SAD PF07973.9 gi|385775155|ref|YP_005647723.1| - 0.024 14.4 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Threonyl and Alanyl tRNA synthetase second additional domain Poxvirus PF06227.7 gi|385775155|ref|YP_005647723.1| - 0.22 11.0 1.9 0.43 10.1 1.3 1.6 1 1 0 1 1 1 0 dsDNA Poxvirus Synapsin_N PF10581.4 gi|385775156|ref|YP_005647724.1| - 0.012 15.4 0.0 0.033 13.9 0.0 1.7 1 0 0 1 1 1 0 Synapsin N-terminal DUF1933 PF09147.5 gi|385775157|ref|YP_005647725.1| - 0.11 11.9 0.1 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1933) SIS PF01380.17 gi|385775158|ref|YP_005647726.1| - 3.8e-37 126.8 1.0 4.6e-25 87.7 0.4 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|385775158|ref|YP_005647726.1| - 1.8e-16 60.3 0.0 3.2e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|385775158|ref|YP_005647726.1| - 3.5e-13 49.3 0.0 7.1e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|385775158|ref|YP_005647726.1| - 1.1e-10 40.7 0.0 7.8e-07 28.1 0.0 3.2 1 1 2 3 3 3 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|385775158|ref|YP_005647726.1| - 3.4e-05 23.5 4.2 0.0035 17.0 1.2 3.9 2 2 1 3 3 3 1 SIS domain GATase_4 PF13230.1 gi|385775158|ref|YP_005647726.1| - 0.0013 17.4 0.0 0.0023 16.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II ApoLp-III PF07464.6 gi|385775158|ref|YP_005647726.1| - 0.0088 16.0 0.1 0.22 11.5 0.1 2.4 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) ParA PF10609.4 gi|385775158|ref|YP_005647726.1| - 0.035 14.0 2.9 0.092 12.6 0.1 2.8 3 0 0 3 3 3 0 ParA/MinD ATPase like ABC_tran PF00005.22 gi|385775159|ref|YP_005647727.1| - 9e-25 87.5 0.0 1.6e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775159|ref|YP_005647727.1| - 8.4e-16 58.7 6.2 4.5e-09 36.6 0.2 2.4 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|385775159|ref|YP_005647727.1| - 2e-08 33.7 0.9 8.2e-05 21.8 0.8 2.2 1 1 1 2 2 2 2 AAA ATPase domain ArgK PF03308.11 gi|385775159|ref|YP_005647727.1| - 0.00016 20.5 0.0 0.00025 19.9 0.0 1.3 1 0 0 1 1 1 1 ArgK protein SRP54 PF00448.17 gi|385775159|ref|YP_005647727.1| - 0.00027 20.4 0.0 0.00062 19.2 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|385775159|ref|YP_005647727.1| - 0.00038 20.6 0.0 0.0018 18.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|385775159|ref|YP_005647727.1| - 0.00071 19.9 3.0 0.0011 19.2 2.1 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|385775159|ref|YP_005647727.1| - 0.002 17.8 0.1 0.0047 16.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|385775159|ref|YP_005647727.1| - 0.0039 17.0 0.0 0.019 14.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|385775159|ref|YP_005647727.1| - 0.0066 16.0 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775159|ref|YP_005647727.1| - 0.0095 15.4 0.4 0.018 14.5 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385775159|ref|YP_005647727.1| - 0.015 15.3 0.2 0.11 12.5 0.2 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|385775159|ref|YP_005647727.1| - 0.023 14.1 0.2 0.58 9.5 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|385775159|ref|YP_005647727.1| - 0.029 13.6 0.9 3 7.0 0.1 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|385775159|ref|YP_005647727.1| - 0.031 14.4 0.5 0.078 13.1 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|385775159|ref|YP_005647727.1| - 0.037 13.2 0.1 0.081 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mur_ligase_M PF08245.7 gi|385775159|ref|YP_005647727.1| - 0.041 13.9 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 Mur ligase middle domain AAA_17 PF13207.1 gi|385775159|ref|YP_005647727.1| - 0.055 14.2 0.8 0.11 13.3 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|385775159|ref|YP_005647727.1| - 0.076 13.3 3.1 1.5 9.1 2.1 2.4 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|385775159|ref|YP_005647727.1| - 0.08 12.3 0.0 0.21 10.9 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase AAA_25 PF13481.1 gi|385775159|ref|YP_005647727.1| - 0.11 11.8 0.0 0.38 10.1 0.0 1.9 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|385775159|ref|YP_005647727.1| - 0.14 11.8 0.7 0.42 10.3 0.5 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|385775159|ref|YP_005647727.1| - 0.18 11.7 0.2 0.47 10.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF1418 PF07214.7 gi|385775161|ref|YP_005647729.1| - 0.42 10.2 3.4 0.77 9.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) Lysine_decarbox PF03641.9 gi|385775162|ref|YP_005647730.1| - 0.00083 19.1 0.1 0.0016 18.2 0.1 1.7 1 1 1 2 2 2 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|385775162|ref|YP_005647730.1| - 0.0018 18.1 0.0 0.0042 16.9 0.0 1.6 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase CRS1_YhbY PF01985.16 gi|385775162|ref|YP_005647730.1| - 0.0083 16.1 0.1 0.059 13.3 0.0 2.2 2 1 0 2 2 2 1 CRS1 / YhbY (CRM) domain Ldh_2 PF02615.9 gi|385775163|ref|YP_005647731.1| - 4.5e-42 143.9 0.0 5.2e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase SAF PF08666.7 gi|385775164|ref|YP_005647732.1| - 5.8e-15 55.4 2.7 1.1e-14 54.5 1.9 1.5 1 1 0 1 1 1 1 SAF domain DUF2190 PF09956.4 gi|385775164|ref|YP_005647732.1| - 0.041 13.6 0.1 0.18 11.5 0.1 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2190) DUF3465 PF11948.3 gi|385775164|ref|YP_005647732.1| - 0.073 12.8 0.1 0.19 11.5 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3465) GD_AH_C PF04295.8 gi|385775165|ref|YP_005647733.1| - 6.6e-128 426.7 0.0 7.4e-128 426.5 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus MR_MLE_C PF13378.1 gi|385775166|ref|YP_005647734.1| - 2.9e-16 59.4 0.0 5.4e-16 58.5 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|385775166|ref|YP_005647734.1| - 6.9e-12 45.7 0.0 1.1e-11 45.0 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|385775166|ref|YP_005647734.1| - 4.3e-07 29.9 0.0 6.9e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF3397 PF11877.3 gi|385775167|ref|YP_005647735.1| - 0.0097 15.8 0.6 0.012 15.6 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3397) COX6C PF02937.10 gi|385775167|ref|YP_005647735.1| - 0.017 15.0 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIc NicO PF03824.11 gi|385775168|ref|YP_005647736.1| - 4.2e-79 265.8 12.7 6.2e-79 265.2 8.8 1.2 1 0 0 1 1 1 1 High-affinity nickel-transport protein FCD PF07729.7 gi|385775169|ref|YP_005647737.1| - 1.1e-23 83.8 1.0 1.5e-23 83.4 0.7 1.1 1 0 0 1 1 1 1 FCD domain GntR PF00392.16 gi|385775169|ref|YP_005647737.1| - 1.8e-16 59.3 0.1 4.1e-16 58.1 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|385775169|ref|YP_005647737.1| - 0.00016 21.0 1.0 0.00048 19.4 0.2 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FadR_C PF07840.7 gi|385775169|ref|YP_005647737.1| - 0.00059 19.4 0.8 0.00093 18.8 0.5 1.5 1 1 0 1 1 1 1 FadR C-terminal domain Prefoldin PF02996.12 gi|385775169|ref|YP_005647737.1| - 0.00076 19.1 0.2 0.0016 18.0 0.1 1.5 1 0 0 1 1 1 1 Prefoldin subunit HTH_Crp_2 PF13545.1 gi|385775169|ref|YP_005647737.1| - 0.00092 18.9 0.0 0.0043 16.8 0.0 2.1 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|385775169|ref|YP_005647737.1| - 0.0055 16.1 3.4 0.0077 15.7 0.0 2.7 3 1 0 3 3 3 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|385775169|ref|YP_005647737.1| - 0.0061 16.8 0.1 0.054 13.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|385775169|ref|YP_005647737.1| - 0.0092 15.6 0.1 0.025 14.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|385775169|ref|YP_005647737.1| - 0.022 14.3 1.0 0.052 13.1 0.1 2.2 2 0 0 2 2 2 0 HTH domain HTH_DeoR PF08220.7 gi|385775169|ref|YP_005647737.1| - 0.025 14.1 0.0 0.082 12.4 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Phage_rep_O PF04492.8 gi|385775169|ref|YP_005647737.1| - 0.046 13.9 0.0 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage replication protein O EAP30 PF04157.11 gi|385775169|ref|YP_005647737.1| - 0.057 12.5 0.1 0.33 10.0 0.0 2.0 2 0 0 2 2 2 0 EAP30/Vps36 family FaeA PF04703.7 gi|385775169|ref|YP_005647737.1| - 0.062 13.4 1.4 0.37 10.9 0.0 2.7 3 0 0 3 3 3 0 FaeA-like protein HTH_17 PF12728.2 gi|385775169|ref|YP_005647737.1| - 0.062 13.5 0.0 2.2 8.5 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|385775169|ref|YP_005647737.1| - 0.093 12.2 5.9 0.15 11.5 0.1 3.2 2 1 2 4 4 4 0 Domain of unknown function (DUF4423) MarR PF01047.17 gi|385775169|ref|YP_005647737.1| - 0.094 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF2203 PF09969.4 gi|385775169|ref|YP_005647737.1| - 0.27 11.4 1.4 16 5.7 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) HpcH_HpaI PF03328.9 gi|385775170|ref|YP_005647738.1| - 1.6e-33 115.4 0.0 5.6e-32 110.4 0.0 2.2 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|385775170|ref|YP_005647738.1| - 6.7e-18 64.6 0.1 5.9e-09 35.2 0.0 2.2 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold BH4 PF02180.12 gi|385775170|ref|YP_005647738.1| - 0.086 12.3 0.2 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 Bcl-2 homology region 4 4HBT PF03061.17 gi|385775171|ref|YP_005647739.1| - 2.4e-18 66.0 0.0 3.2e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|385775171|ref|YP_005647739.1| - 2.7e-06 27.3 0.0 3.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.1 gi|385775171|ref|YP_005647739.1| - 0.0059 16.5 0.0 0.0075 16.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PS-DH PF14765.1 gi|385775171|ref|YP_005647739.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Polyketide synthase dehydratase Arch_ATPase PF01637.13 gi|385775172|ref|YP_005647740.1| - 1.5e-07 31.3 0.1 2.7e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|385775172|ref|YP_005647740.1| - 8.9e-07 28.8 0.1 2.8e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|385775172|ref|YP_005647740.1| - 0.018 15.1 0.0 0.082 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF998 PF06197.8 gi|385775175|ref|YP_005647743.1| - 2.2e-07 30.3 6.9 2.9e-07 29.9 4.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Nitrate_red_gam PF02665.9 gi|385775176|ref|YP_005647744.1| - 4.2e-70 235.5 19.7 5.1e-70 235.2 13.6 1.0 1 0 0 1 1 1 1 Nitrate reductase gamma subunit TrbL PF04610.9 gi|385775176|ref|YP_005647744.1| - 0.14 11.8 8.4 0.35 10.5 5.8 1.6 1 1 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein ResB PF05140.9 gi|385775176|ref|YP_005647744.1| - 2.2 6.6 4.2 0.54 8.7 0.8 1.3 1 1 0 1 1 1 0 ResB-like family DUF4149 PF13664.1 gi|385775176|ref|YP_005647744.1| - 5.4 7.1 9.4 0.45 10.5 2.3 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) Nitrate_red_del PF02613.10 gi|385775177|ref|YP_005647745.1| - 1.9e-06 27.7 0.0 3.3e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 Nitrate reductase delta subunit Big_3 PF07523.7 gi|385775177|ref|YP_005647745.1| - 0.057 13.4 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Fer4_11 PF13247.1 gi|385775178|ref|YP_005647746.1| - 3.4e-39 132.7 7.8 3.4e-39 132.7 5.4 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.1 gi|385775178|ref|YP_005647746.1| - 3.3e-22 77.8 0.0 5.7e-22 77.0 0.0 1.4 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_6 PF12837.2 gi|385775178|ref|YP_005647746.1| - 5.2e-10 38.7 21.2 0.005 16.6 0.6 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385775178|ref|YP_005647746.1| - 1.5e-07 31.0 18.1 6.5e-05 22.6 3.8 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385775178|ref|YP_005647746.1| - 2.8e-07 30.0 18.0 0.00038 20.2 1.1 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385775178|ref|YP_005647746.1| - 5.7e-07 29.8 19.4 0.0034 17.7 6.4 3.4 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385775178|ref|YP_005647746.1| - 7.9e-05 22.8 18.9 0.64 10.3 0.1 3.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385775178|ref|YP_005647746.1| - 0.0002 20.8 20.2 0.0044 16.5 1.1 4.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385775178|ref|YP_005647746.1| - 0.0023 18.1 23.0 0.21 12.0 1.0 4.0 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385775178|ref|YP_005647746.1| - 0.017 15.0 17.8 0.099 12.5 0.9 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385775178|ref|YP_005647746.1| - 0.25 11.7 17.7 0.49 10.7 0.2 3.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385775178|ref|YP_005647746.1| - 1.1 9.9 36.3 0.37 11.4 4.9 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385775178|ref|YP_005647746.1| - 1.8 9.1 8.6 7.4 7.2 0.0 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|385775178|ref|YP_005647746.1| - 3.6 8.4 17.1 13 6.5 0.3 3.8 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|385775178|ref|YP_005647746.1| - 5.3 7.1 19.0 0.43 10.6 0.1 3.4 2 1 0 2 2 1 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|385775179|ref|YP_005647747.1| - 2.1e-148 494.6 0.0 2.5e-148 494.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385775179|ref|YP_005647747.1| - 2.1e-22 79.0 0.1 5.9e-22 77.5 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Nitr_red_alph_N PF14710.1 gi|385775179|ref|YP_005647747.1| - 0.0021 18.2 6.8 0.0062 16.7 4.7 1.8 1 0 0 1 1 1 1 Respiratory nitrate reductase alpha N-terminal MFS_1 PF07690.11 gi|385775180|ref|YP_005647748.1| - 1.6e-33 115.8 61.5 1e-19 70.4 22.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily 4HBT PF03061.17 gi|385775181|ref|YP_005647749.1| - 1.6e-10 40.9 0.0 2.2e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|385775181|ref|YP_005647749.1| - 0.0032 17.2 0.0 0.0039 16.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Abhydrolase_6 PF12697.2 gi|385775182|ref|YP_005647750.1| - 6e-05 23.0 0.0 8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF2048 PF09752.4 gi|385775182|ref|YP_005647750.1| - 7.6e-05 21.7 0.0 7.6e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2048) Abhydrolase_5 PF12695.2 gi|385775182|ref|YP_005647750.1| - 0.00015 21.5 0.0 0.00023 20.9 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|385775182|ref|YP_005647750.1| - 0.00053 18.5 0.0 0.029 12.8 0.0 2.0 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|385775183|ref|YP_005647751.1| - 1.8e-05 24.7 0.0 1.9e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|385775183|ref|YP_005647751.1| - 5.7e-05 22.8 0.0 5.9e-05 22.8 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|385775183|ref|YP_005647751.1| - 0.00011 21.9 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|385775183|ref|YP_005647751.1| - 0.0065 15.9 0.0 0.007 15.8 0.0 1.0 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) HTH_29 PF13551.1 gi|385775184|ref|YP_005647752.1| - 1.5e-15 57.3 0.2 5.2e-15 55.5 0.1 1.9 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|385775184|ref|YP_005647752.1| - 1.6e-13 49.8 0.1 7.5e-13 47.6 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|385775184|ref|YP_005647752.1| - 4e-12 45.8 0.8 9e-12 44.7 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain DDE_3 PF13358.1 gi|385775184|ref|YP_005647752.1| - 9.1e-11 41.7 0.1 2.8e-09 36.8 0.1 2.6 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_17 PF12728.2 gi|385775184|ref|YP_005647752.1| - 6.5e-08 32.6 4.8 1.4e-06 28.4 0.1 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|385775184|ref|YP_005647752.1| - 1.9e-07 30.5 0.6 4.8e-07 29.2 0.0 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_32 PF13565.1 gi|385775184|ref|YP_005647752.1| - 2.9e-07 31.1 1.2 1e-06 29.3 0.3 2.2 1 1 1 2 2 2 2 Homeodomain-like domain HTH_7 PF02796.10 gi|385775184|ref|YP_005647752.1| - 3.4e-07 30.0 0.3 7.9e-07 28.8 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase Terminase_5 PF06056.7 gi|385775184|ref|YP_005647752.1| - 4.4e-07 29.3 0.0 1.2e-06 27.9 0.0 1.8 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4_2 PF08281.7 gi|385775184|ref|YP_005647752.1| - 7.9e-06 25.2 0.0 1.8e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.17 gi|385775184|ref|YP_005647752.1| - 2.2e-05 24.0 0.0 9.9e-05 21.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_Tnp_1 PF01527.15 gi|385775184|ref|YP_005647752.1| - 2.2e-05 24.2 0.1 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_40 PF14493.1 gi|385775184|ref|YP_005647752.1| - 3e-05 24.1 1.3 5.7e-05 23.2 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|385775184|ref|YP_005647752.1| - 0.00016 21.3 2.9 0.00025 20.7 2.0 1.3 1 0 0 1 1 1 1 Transposase TrmB PF01978.14 gi|385775184|ref|YP_005647752.1| - 0.00021 20.8 0.0 0.00057 19.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385775184|ref|YP_005647752.1| - 0.0024 17.3 0.0 0.0048 16.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_33 PF13592.1 gi|385775184|ref|YP_005647752.1| - 0.0034 16.8 0.2 0.044 13.3 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|385775184|ref|YP_005647752.1| - 0.0053 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MerR_1 PF13411.1 gi|385775184|ref|YP_005647752.1| - 0.0063 16.2 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein CENP-B_N PF04218.8 gi|385775184|ref|YP_005647752.1| - 0.0079 15.6 0.0 0.025 13.9 0.0 1.9 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain MarR_2 PF12802.2 gi|385775184|ref|YP_005647752.1| - 0.01 15.4 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|385775184|ref|YP_005647752.1| - 0.012 15.7 0.0 0.068 13.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|385775184|ref|YP_005647752.1| - 0.012 15.4 0.0 0.064 13.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_11 PF08279.7 gi|385775184|ref|YP_005647752.1| - 0.013 15.0 0.0 0.066 12.8 0.0 2.2 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|385775184|ref|YP_005647752.1| - 0.017 14.8 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma54_DBD PF04552.8 gi|385775184|ref|YP_005647752.1| - 0.02 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54, DNA binding domain DUF1580 PF07618.6 gi|385775184|ref|YP_005647752.1| - 0.024 13.9 0.1 0.059 12.7 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF1580) HTH_Crp_2 PF13545.1 gi|385775184|ref|YP_005647752.1| - 0.034 13.9 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_terminase PF10668.4 gi|385775184|ref|YP_005647752.1| - 0.036 13.8 0.6 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Phage terminase small subunit HTH_26 PF13443.1 gi|385775184|ref|YP_005647752.1| - 0.048 13.8 0.0 1.1 9.5 0.0 2.4 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_Tnp_4 PF13613.1 gi|385775184|ref|YP_005647752.1| - 0.059 12.9 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease MerR PF00376.18 gi|385775184|ref|YP_005647752.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein Sigma70_ECF PF07638.6 gi|385775184|ref|YP_005647752.1| - 0.075 12.6 0.2 0.14 11.8 0.0 1.5 2 0 0 2 2 1 0 ECF sigma factor HTH_30 PF13556.1 gi|385775184|ref|YP_005647752.1| - 0.1 12.1 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|385775184|ref|YP_005647752.1| - 0.13 11.4 0.1 0.49 9.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Apolipoprotein PF01442.13 gi|385775185|ref|YP_005647753.1| - 4.4e-07 29.6 9.8 6e-07 29.1 6.4 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain UPF0102 PF02021.12 gi|385775185|ref|YP_005647753.1| - 0.001 18.9 0.1 0.0028 17.5 0.1 1.8 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NERD PF08378.6 gi|385775185|ref|YP_005647753.1| - 0.0028 17.9 0.2 0.0084 16.3 0.1 1.8 1 0 0 1 1 1 1 Nuclease-related domain DUF4143 PF13635.1 gi|385775185|ref|YP_005647753.1| - 0.0031 17.6 9.3 0.0043 17.1 6.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Dynamin_M PF01031.15 gi|385775185|ref|YP_005647753.1| - 0.0055 15.5 11.2 0.18 10.5 4.6 2.2 1 1 1 2 2 2 2 Dynamin central region Prominin PF05478.6 gi|385775185|ref|YP_005647753.1| - 0.0055 14.3 3.7 0.0079 13.7 2.6 1.4 1 0 0 1 1 1 1 Prominin DUF883 PF05957.8 gi|385775185|ref|YP_005647753.1| - 0.014 15.7 1.3 0.014 15.7 0.9 2.7 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) hDGE_amylase PF14701.1 gi|385775185|ref|YP_005647753.1| - 0.023 13.6 8.7 0.025 13.4 6.0 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Fzo_mitofusin PF04799.8 gi|385775185|ref|YP_005647753.1| - 0.059 12.7 9.1 0.24 10.7 1.2 2.7 1 1 1 2 2 2 0 fzo-like conserved region Baculo_PEP_C PF04513.7 gi|385775185|ref|YP_005647753.1| - 0.096 12.5 11.1 0.34 10.7 4.8 2.7 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF885 PF05960.6 gi|385775185|ref|YP_005647753.1| - 0.19 10.8 5.3 0.21 10.7 3.7 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) OmpH PF03938.9 gi|385775185|ref|YP_005647753.1| - 0.2 11.5 9.8 0.13 12.1 5.1 1.9 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) ApoLp-III PF07464.6 gi|385775185|ref|YP_005647753.1| - 0.21 11.6 16.1 0.39 10.7 7.4 2.8 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF3618 PF12277.3 gi|385775185|ref|YP_005647753.1| - 0.43 10.6 11.1 2.8 8.0 0.1 4.4 3 2 1 4 4 4 0 Protein of unknown function (DUF3618) Sds3 PF08598.6 gi|385775185|ref|YP_005647753.1| - 0.54 9.7 20.1 0.13 11.7 9.1 2.3 1 1 1 2 2 2 0 Sds3-like DUF1664 PF07889.7 gi|385775185|ref|YP_005647753.1| - 0.54 10.0 16.2 2.7 7.7 2.6 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Lectin_N PF03954.9 gi|385775185|ref|YP_005647753.1| - 0.83 9.0 6.3 0.37 10.1 1.8 2.2 2 1 1 3 3 3 0 Hepatic lectin, N-terminal domain Atg14 PF10186.4 gi|385775185|ref|YP_005647753.1| - 1 8.2 12.8 1.5 7.6 8.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF106 PF01956.11 gi|385775185|ref|YP_005647753.1| - 1.5 8.3 4.4 5.9 6.3 3.0 2.0 1 1 0 1 1 1 0 Integral membrane protein DUF106 MRP-S31 PF15433.1 gi|385775185|ref|YP_005647753.1| - 1.7 7.9 10.0 2.7 7.3 6.6 1.4 1 1 0 1 1 1 0 Mitochondrial 28S ribosomal protein S31 DUF1706 PF08020.6 gi|385775185|ref|YP_005647753.1| - 1.7 8.0 9.7 3.8 6.9 0.1 3.0 1 1 1 3 3 3 0 Protein of unknown function (DUF1706) PTR PF12789.2 gi|385775185|ref|YP_005647753.1| - 1.8 8.4 4.6 2.4 8.0 0.8 2.5 2 0 0 2 2 2 0 Phage tail repeat like Exonuc_VII_L PF02601.10 gi|385775185|ref|YP_005647753.1| - 1.9 7.6 11.0 2.6 7.1 7.6 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit Tweety PF04906.8 gi|385775185|ref|YP_005647753.1| - 4.4 5.6 5.6 4.2 5.6 1.3 2.0 1 1 1 2 2 2 0 Tweety AAA_14 PF13173.1 gi|385775186|ref|YP_005647754.1| - 2.7e-32 111.3 0.2 3.8e-32 110.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385775186|ref|YP_005647754.1| - 6.4e-10 39.1 0.5 0.00079 19.1 0.1 2.3 1 1 1 2 2 2 2 Archaeal ATPase AAA_17 PF13207.1 gi|385775186|ref|YP_005647754.1| - 0.0076 17.0 0.1 0.014 16.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385775186|ref|YP_005647754.1| - 0.015 15.4 0.0 0.029 14.5 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385775186|ref|YP_005647754.1| - 0.026 14.6 0.0 0.94 9.6 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385775186|ref|YP_005647754.1| - 0.028 13.8 0.1 1.3 8.4 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain MobB PF03205.9 gi|385775186|ref|YP_005647754.1| - 0.032 13.9 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|385775186|ref|YP_005647754.1| - 0.05 13.5 0.0 0.38 10.7 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain VD10_N PF08476.5 gi|385775186|ref|YP_005647754.1| - 0.065 12.7 0.0 0.19 11.2 0.0 1.8 2 0 0 2 2 2 0 Viral D10 N-terminal Lac_bphage_repr PF06543.7 gi|385775186|ref|YP_005647754.1| - 0.11 12.0 0.2 0.23 10.9 0.1 1.5 1 0 0 1 1 1 0 Lactococcus bacteriophage repressor Nramp PF01566.13 gi|385775187|ref|YP_005647755.1| - 2.2e-34 118.8 23.2 4.5e-34 117.7 16.1 1.4 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein Ferritin PF00210.19 gi|385775188|ref|YP_005647756.1| - 4e-20 72.0 0.4 5e-20 71.7 0.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|385775188|ref|YP_005647756.1| - 5.2e-06 26.8 0.2 6.5e-06 26.5 0.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF4439 PF14530.1 gi|385775188|ref|YP_005647756.1| - 0.01 16.2 0.2 1.3 9.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) Rieske PF00355.21 gi|385775189|ref|YP_005647757.1| - 1.6e-13 49.9 0.0 1.9e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|385775189|ref|YP_005647757.1| - 6.5e-11 41.8 0.0 8.3e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Cas_NE0113 PF09623.5 gi|385775190|ref|YP_005647758.1| - 1.4e-14 54.0 0.0 3e-14 53.0 0.0 1.4 1 1 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_Cas02710 PF09670.5 gi|385775190|ref|YP_005647758.1| - 0.0039 15.8 0.0 0.0043 15.7 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF2103 PF09876.4 gi|385775190|ref|YP_005647758.1| - 0.042 13.6 0.6 6.5 6.5 0.0 2.3 2 0 0 2 2 2 0 Predicted metal-binding protein (DUF2103) SIS_2 PF13580.1 gi|385775190|ref|YP_005647758.1| - 0.045 13.4 0.1 0.067 12.9 0.1 1.3 1 0 0 1 1 1 0 SIS domain tRNA_m1G_MT PF01746.16 gi|385775190|ref|YP_005647758.1| - 0.048 13.2 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase COX2 PF00116.15 gi|385775191|ref|YP_005647759.1| - 6.3e-07 29.2 0.1 9.1e-05 22.2 0.0 2.3 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|385775191|ref|YP_005647759.1| - 0.00013 21.8 0.0 0.0024 17.7 0.0 2.3 1 1 0 1 1 1 1 Cupredoxin-like domain YHS PF04945.8 gi|385775192|ref|YP_005647760.1| - 3.9e-11 42.6 8.4 1.2e-09 37.8 0.9 2.3 2 1 0 2 2 2 2 YHS domain Arc_trans_TRASH PF08394.5 gi|385775192|ref|YP_005647760.1| - 0.0014 18.7 2.8 0.0014 18.7 1.9 2.7 2 1 1 3 3 3 2 Archaeal TRASH domain zf-UBR PF02207.15 gi|385775192|ref|YP_005647760.1| - 0.015 15.0 5.1 0.02 14.6 3.5 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) HTH_Tnp_Tc3_1 PF11427.3 gi|385775192|ref|YP_005647760.1| - 0.057 13.0 3.6 4.1 7.1 0.4 3.0 3 0 0 3 3 3 0 Tc3 transposase zf-FCS PF06467.9 gi|385775192|ref|YP_005647760.1| - 0.079 12.6 3.4 0.28 10.8 0.6 2.4 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF2757 PF10955.3 gi|385775192|ref|YP_005647760.1| - 0.11 12.6 4.7 0.42 10.8 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) zf-C3HC4_3 PF13920.1 gi|385775192|ref|YP_005647760.1| - 0.25 11.0 8.6 0.043 13.4 1.0 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.7 gi|385775192|ref|YP_005647760.1| - 0.85 9.7 0.0 0.85 9.7 0.0 2.6 3 0 0 3 3 2 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_3 PF14369.1 gi|385775192|ref|YP_005647760.1| - 0.94 9.5 10.7 0.9 9.5 0.1 3.3 2 1 1 3 3 3 0 zinc-finger zf-C3HC4_2 PF13923.1 gi|385775192|ref|YP_005647760.1| - 1.3 9.0 9.4 5.8 7.0 3.4 2.5 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Evr1_Alr PF04777.8 gi|385775192|ref|YP_005647760.1| - 1.4 8.8 6.5 0.79 9.6 0.6 2.1 1 1 1 2 2 2 0 Erv1 / Alr family FANCL_C PF11793.3 gi|385775192|ref|YP_005647760.1| - 2.2 8.3 8.0 0.64 10.0 1.5 2.4 2 1 0 2 2 2 0 FANCL C-terminal domain HypA PF01155.14 gi|385775192|ref|YP_005647760.1| - 2.4 7.8 7.5 20 4.9 5.2 2.0 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|385775192|ref|YP_005647760.1| - 4 7.3 12.2 6.5 6.6 0.2 3.2 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|385775192|ref|YP_005647760.1| - 9.7 6.5 11.1 18 5.6 3.0 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar HEPN PF05168.9 gi|385775193|ref|YP_005647761.1| - 4.8e-22 78.0 1.2 5.9e-22 77.7 0.8 1.1 1 0 0 1 1 1 1 HEPN domain TPR_10 PF13374.1 gi|385775193|ref|YP_005647761.1| - 0.069 13.1 0.2 5.3 7.1 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|385775194|ref|YP_005647762.1| - 9e-11 41.9 1.5 2.1e-10 40.8 1.1 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|385775194|ref|YP_005647762.1| - 0.00083 18.9 0.0 0.015 14.9 0.0 2.0 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 Flavin_Reduct PF01613.13 gi|385775195|ref|YP_005647763.1| - 4.7e-23 81.7 0.0 5.8e-23 81.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain FF PF01846.14 gi|385775196|ref|YP_005647764.1| - 0.025 14.5 0.2 0.069 13.1 0.1 1.8 1 0 0 1 1 1 0 FF domain DDE_3 PF13358.1 gi|385775197|ref|YP_005647765.1| - 3.4e-21 75.5 0.0 9e-21 74.1 0.0 1.7 1 1 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|385775197|ref|YP_005647765.1| - 0.0023 18.0 0.0 0.0054 16.8 0.0 1.6 1 1 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|385775197|ref|YP_005647765.1| - 0.014 14.5 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 DDE superfamily endonuclease DUF4384 PF14326.1 gi|385775197|ref|YP_005647765.1| - 0.069 12.9 0.3 5.8 6.8 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4384) MFS_1 PF07690.11 gi|385775198|ref|YP_005647766.1| - 6.6e-09 34.9 19.0 9.7e-07 27.8 7.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2306 PF10067.4 gi|385775198|ref|YP_005647766.1| - 0.48 10.5 4.1 0.84 9.7 0.0 2.6 1 1 0 2 2 2 0 Predicted membrane protein (DUF2306) PaREP1 PF05942.6 gi|385775199|ref|YP_005647767.1| - 1.9e-08 34.1 0.0 2e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PaREP1 PF05942.6 gi|385775200|ref|YP_005647768.1| - 6.1e-14 51.8 0.3 8.3e-14 51.4 0.2 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family CbiA PF01656.18 gi|385775202|ref|YP_005647770.1| - 5.4e-12 45.5 2.9 5e-11 42.3 2.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385775202|ref|YP_005647770.1| - 1.2e-11 44.7 0.2 7e-11 42.3 0.1 2.2 1 1 1 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|385775202|ref|YP_005647770.1| - 0.00023 20.3 1.8 0.00063 18.8 0.0 2.3 3 0 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|385775202|ref|YP_005647770.1| - 0.00068 18.7 0.1 0.3 10.1 0.0 2.6 3 0 0 3 3 3 2 ATPase MipZ ResIII PF04851.10 gi|385775202|ref|YP_005647770.1| - 0.16 11.7 0.6 0.68 9.7 0.1 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit OrfB_IS605 PF01385.14 gi|385775203|ref|YP_005647771.1| - 1.4e-27 96.6 5.4 1.7e-27 96.2 3.7 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775203|ref|YP_005647771.1| - 4.8e-24 83.8 0.1 9.3e-24 82.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775203|ref|YP_005647771.1| - 0.023 14.0 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|385775203|ref|YP_005647771.1| - 0.084 12.5 0.8 4.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|385775203|ref|YP_005647771.1| - 0.17 11.1 1.9 4.1 6.7 2.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385775203|ref|YP_005647771.1| - 0.29 10.9 0.8 8.9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385775203|ref|YP_005647771.1| - 1 9.5 3.3 0.49 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) UPF0184 PF03670.8 gi|385775204|ref|YP_005647772.1| - 0.11 12.6 0.2 0.17 12.0 0.1 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0184) NAD_binding_2 PF03446.10 gi|385775205|ref|YP_005647773.1| - 1.6e-53 180.9 0.7 2e-53 180.5 0.1 1.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|385775205|ref|YP_005647773.1| - 1.7e-34 118.5 0.7 2.3e-34 118.0 0.5 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|385775205|ref|YP_005647773.1| - 5.6e-08 33.1 0.2 1.8e-07 31.4 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|385775205|ref|YP_005647773.1| - 1.5e-06 27.5 0.0 8.6e-06 25.0 0.0 2.1 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|385775205|ref|YP_005647773.1| - 0.00071 19.6 0.0 0.0015 18.5 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|385775205|ref|YP_005647773.1| - 0.0043 16.7 0.2 0.018 14.6 0.1 2.1 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|385775205|ref|YP_005647773.1| - 0.0056 16.5 0.0 0.019 14.8 0.0 1.9 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|385775205|ref|YP_005647773.1| - 0.0075 15.7 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|385775205|ref|YP_005647773.1| - 0.0095 15.3 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_N PF03721.9 gi|385775205|ref|YP_005647773.1| - 0.02 14.3 0.0 0.048 13.0 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HTH_34 PF13601.1 gi|385775206|ref|YP_005647774.1| - 0.00049 20.0 0.3 0.0092 15.9 0.1 2.6 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR PF01047.17 gi|385775206|ref|YP_005647774.1| - 0.0013 18.3 0.2 0.0022 17.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385775206|ref|YP_005647774.1| - 0.0057 16.0 0.0 0.021 14.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385775206|ref|YP_005647774.1| - 0.014 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Dexa_ind PF15198.1 gi|385775206|ref|YP_005647774.1| - 0.032 14.1 1.6 0.047 13.5 0.2 1.9 2 1 0 2 2 2 0 Dexamethasone-induced Fe_dep_repress PF01325.14 gi|385775206|ref|YP_005647774.1| - 0.088 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|385775206|ref|YP_005647774.1| - 0.09 13.1 0.0 0.34 11.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF1286 PF06939.6 gi|385775207|ref|YP_005647775.1| - 4.9e-12 46.0 0.6 5.8e-12 45.7 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1286) DUF457 PF04307.9 gi|385775207|ref|YP_005647775.1| - 0.12 11.6 0.2 0.14 11.4 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Arch_ATPase PF01637.13 gi|385775208|ref|YP_005647776.1| - 1.7e-27 96.6 0.7 1.7e-27 96.6 0.5 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|385775208|ref|YP_005647776.1| - 3.2e-08 33.5 2.8 1e-06 28.6 0.5 3.1 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|385775208|ref|YP_005647776.1| - 9e-07 28.7 0.6 9e-07 28.7 0.4 1.6 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.1 gi|385775208|ref|YP_005647776.1| - 3.4e-06 27.1 0.0 1.8e-05 24.8 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|385775208|ref|YP_005647776.1| - 2e-05 24.7 0.1 7.8e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_35 PF14516.1 gi|385775208|ref|YP_005647776.1| - 4.4e-05 22.2 0.1 0.00011 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|385775208|ref|YP_005647776.1| - 0.00071 19.7 0.1 0.0022 18.2 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|385775208|ref|YP_005647776.1| - 0.0014 17.5 0.6 0.0022 16.9 0.1 1.5 2 0 0 2 2 2 1 NB-ARC domain NACHT PF05729.7 gi|385775208|ref|YP_005647776.1| - 0.0056 16.3 0.0 0.014 15.0 0.0 1.6 1 1 0 1 1 1 1 NACHT domain TIR PF01582.15 gi|385775208|ref|YP_005647776.1| - 0.035 13.5 2.2 1.4 8.3 0.1 2.3 2 0 0 2 2 2 0 TIR domain DUF815 PF05673.8 gi|385775208|ref|YP_005647776.1| - 0.07 12.0 0.7 0.16 10.8 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TK PF00265.13 gi|385775208|ref|YP_005647776.1| - 0.095 12.2 0.1 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 Thymidine kinase HTH_32 PF13565.1 gi|385775210|ref|YP_005647778.1| - 0.11 13.2 0.2 0.21 12.4 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF4110 PF13422.1 gi|385775210|ref|YP_005647778.1| - 0.19 11.5 3.0 0.3 10.9 2.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) Cas_NE0113 PF09623.5 gi|385775211|ref|YP_005647779.1| - 4e-05 23.1 0.0 4.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) DUF2103 PF09876.4 gi|385775211|ref|YP_005647779.1| - 0.086 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2103) DUF2371 PF10177.4 gi|385775212|ref|YP_005647780.1| - 0.0018 18.1 4.8 0.012 15.5 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2371) DUF1469 PF07332.6 gi|385775212|ref|YP_005647780.1| - 0.068 12.9 9.6 0.89 9.2 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF4418 PF14387.1 gi|385775212|ref|YP_005647780.1| - 0.25 11.0 6.7 1 9.1 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) Cation_ATPase_C PF00689.16 gi|385775212|ref|YP_005647780.1| - 0.27 10.7 4.6 0.49 9.8 3.2 1.5 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus NfeD PF01957.13 gi|385775212|ref|YP_005647780.1| - 0.27 11.3 9.5 0.77 9.8 0.4 2.2 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Neurensin PF14927.1 gi|385775212|ref|YP_005647780.1| - 0.61 9.4 9.7 2.6 7.4 1.0 2.2 2 0 0 2 2 2 0 Neurensin DUF3185 PF11381.3 gi|385775212|ref|YP_005647780.1| - 0.64 9.8 16.0 0.13 12.0 2.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) Tetraspannin PF00335.15 gi|385775212|ref|YP_005647780.1| - 1 8.5 6.0 0.7 9.1 0.2 2.0 2 0 0 2 2 2 0 Tetraspanin family Claudin_2 PF13903.1 gi|385775212|ref|YP_005647780.1| - 1.2 8.8 8.1 0.98 9.0 1.4 2.1 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF3611 PF12263.3 gi|385775212|ref|YP_005647780.1| - 2.3 7.5 7.1 1 8.7 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3611) DUF3784 PF12650.2 gi|385775212|ref|YP_005647780.1| - 2.8 7.9 8.2 12 5.9 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) DUF3139 PF11337.3 gi|385775212|ref|YP_005647780.1| - 3.3 8.0 8.0 6.2 7.1 1.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DLH PF01738.13 gi|385775213|ref|YP_005647781.1| - 2.4e-78 262.3 0.0 3.2e-78 261.9 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|385775213|ref|YP_005647781.1| - 9.5e-12 44.8 0.0 2.3e-11 43.6 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|385775213|ref|YP_005647781.1| - 8.8e-06 25.7 0.0 0.034 14.0 0.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_2 PF02230.11 gi|385775213|ref|YP_005647781.1| - 1.3e-05 24.7 0.0 2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.8 gi|385775213|ref|YP_005647781.1| - 0.0099 15.4 0.0 0.29 10.6 0.0 2.3 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|385775213|ref|YP_005647781.1| - 0.023 14.2 0.2 0.15 11.6 0.1 2.0 1 1 0 2 2 2 0 alpha/beta hydrolase fold Chlorophyllase2 PF12740.2 gi|385775213|ref|YP_005647781.1| - 0.027 13.3 0.0 0.045 12.6 0.0 1.5 1 1 0 1 1 1 0 Chlorophyllase enzyme BAAT_C PF08840.6 gi|385775213|ref|YP_005647781.1| - 0.034 13.8 0.4 10 5.7 0.0 2.9 3 0 0 3 3 3 0 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.16 gi|385775213|ref|YP_005647781.1| - 0.052 12.7 0.0 2.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family Val_tRNA-synt_C PF10458.4 gi|385775213|ref|YP_005647781.1| - 0.08 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm Connexin43 PF03508.8 gi|385775213|ref|YP_005647781.1| - 0.13 11.5 0.2 0.25 10.6 0.1 1.4 1 0 0 1 1 1 0 Gap junction alpha-1 protein (Cx43) Pro-kuma_activ PF09286.6 gi|385775214|ref|YP_005647782.1| - 1.8e-20 73.4 0.0 2.8e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain TENA_THI-4 PF03070.11 gi|385775215|ref|YP_005647783.1| - 7.2e-33 114.1 0.0 8.6e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Ald_Xan_dh_C2 PF02738.13 gi|385775216|ref|YP_005647784.1| - 1.6e-119 399.7 0.0 2.2e-119 399.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385775216|ref|YP_005647784.1| - 1.2e-24 86.5 0.0 2.3e-24 85.6 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF4064 PF13273.1 gi|385775217|ref|YP_005647785.1| - 0.013 15.5 12.3 0.12 12.5 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF4184 PF13803.1 gi|385775217|ref|YP_005647785.1| - 0.071 12.4 0.9 0.093 12.0 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4184) Ninjurin PF04923.7 gi|385775217|ref|YP_005647785.1| - 0.11 12.2 2.8 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Ninjurin DUF2755 PF10954.3 gi|385775217|ref|YP_005647785.1| - 0.46 10.2 6.6 3.2 7.5 0.2 2.9 1 1 1 3 3 3 0 Protein of unknown function (DUF2755) DUF95 PF01944.12 gi|385775217|ref|YP_005647785.1| - 1.3 8.5 14.8 6.5 6.3 1.4 2.2 1 1 1 2 2 2 0 Integral membrane protein DUF95 Alpha-amylase PF00128.19 gi|385775218|ref|YP_005647786.1| - 2.2e-37 129.1 1.3 4.7e-24 85.3 0.1 3.1 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Alpha-amyl_C PF09071.5 gi|385775218|ref|YP_005647786.1| - 3.4e-28 97.2 0.1 8.2e-28 95.9 0.1 1.7 1 0 0 1 1 1 1 Alpha-amylase, C terminal CBM_48 PF02922.13 gi|385775218|ref|YP_005647786.1| - 2.9e-08 33.6 0.0 8.9e-08 32.0 0.0 1.9 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CBM_48 PF02922.13 gi|385775219|ref|YP_005647787.1| - 6.9e-16 58.0 0.0 7.8e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DUF4322 PF14210.1 gi|385775220|ref|YP_005647788.1| - 2.4e-37 126.2 0.1 5.8e-37 124.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) DDE_5 PF13546.1 gi|385775220|ref|YP_005647788.1| - 0.0047 15.8 0.0 0.0082 15.0 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease PepSY_2 PF13670.1 gi|385775220|ref|YP_005647788.1| - 0.014 15.2 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Alpha-amylase PF00128.19 gi|385775221|ref|YP_005647789.1| - 9.6e-21 74.4 0.1 1.8e-18 67.0 0.0 3.0 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.13 gi|385775221|ref|YP_005647789.1| - 0.0049 16.9 0.0 0.015 15.4 0.0 1.9 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.19 gi|385775222|ref|YP_005647790.1| - 8.7e-25 87.7 5.4 3.9e-21 75.7 0.5 3.4 3 1 0 3 3 3 3 Alpha amylase, catalytic domain Tricorn_PDZ PF14685.1 gi|385775223|ref|YP_005647791.1| - 1.2e-23 82.7 0.2 2.3e-23 81.7 0.1 1.5 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_S41 PF03572.13 gi|385775223|ref|YP_005647791.1| - 1.6e-23 82.9 0.0 7.5e-23 80.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase family S41 Tricorn_C1 PF14684.1 gi|385775223|ref|YP_005647791.1| - 3.3e-21 74.9 2.7 6.8e-21 73.9 1.9 1.5 1 0 0 1 1 1 1 Tricorn protease C1 domain PD40 PF07676.7 gi|385775223|ref|YP_005647791.1| - 1.8e-09 37.0 4.7 5.1e-05 22.8 0.0 6.0 6 0 0 6 6 6 2 WD40-like Beta Propeller Repeat PB1 PF00564.19 gi|385775223|ref|YP_005647791.1| - 0.045 13.4 0.3 0.34 10.6 0.1 2.3 2 0 0 2 2 2 0 PB1 domain RibD_C PF01872.12 gi|385775224|ref|YP_005647792.1| - 1.8e-54 184.4 0.0 2e-54 184.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain WYL PF13280.1 gi|385775225|ref|YP_005647793.1| - 0.024 14.5 0.6 0.026 14.4 0.4 1.1 1 0 0 1 1 1 0 WYL domain rve_2 PF13333.1 gi|385775225|ref|YP_005647793.1| - 0.025 14.6 4.1 0.2 11.7 2.8 2.2 1 1 0 1 1 1 0 Integrase core domain NTP_transf_5 PF14907.1 gi|385775226|ref|YP_005647794.1| - 4.7e-05 22.8 0.1 6.6e-05 22.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF973 PF06157.6 gi|385775227|ref|YP_005647795.1| - 7.9e-82 274.4 30.4 9.1e-82 274.2 21.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF2484 PF10658.4 gi|385775227|ref|YP_005647795.1| - 1.7 8.8 7.3 8.7 6.5 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2484) DUF3317 PF11779.3 gi|385775227|ref|YP_005647795.1| - 3.5 7.1 9.2 1.2 8.5 0.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3317) OrfB_IS605 PF01385.14 gi|385775232|ref|YP_005647800.1| - 0.098 12.0 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Probable transposase Polysacc_synt_C PF14667.1 gi|385775233|ref|YP_005647801.1| - 0.0034 17.1 0.6 0.054 13.2 0.1 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain FtsX PF02687.16 gi|385775233|ref|YP_005647801.1| - 0.0035 17.0 5.8 0.0059 16.3 0.4 2.0 2 0 0 2 2 2 1 FtsX-like permease family Tetraspannin PF00335.15 gi|385775233|ref|YP_005647801.1| - 0.047 12.9 2.6 1.1 8.4 1.8 2.1 1 1 0 1 1 1 0 Tetraspanin family FixQ PF05545.6 gi|385775233|ref|YP_005647801.1| - 0.12 12.0 0.1 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ YesK PF14150.1 gi|385775233|ref|YP_005647801.1| - 0.12 12.4 0.3 0.12 12.4 0.2 1.7 2 0 0 2 2 2 0 YesK-like protein DUF4131 PF13567.1 gi|385775233|ref|YP_005647801.1| - 0.4 10.0 6.8 0.035 13.5 0.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) EamA PF00892.15 gi|385775233|ref|YP_005647801.1| - 0.71 9.9 7.8 1.9 8.5 1.9 2.1 2 0 0 2 2 2 0 EamA-like transporter family DUF202 PF02656.10 gi|385775233|ref|YP_005647801.1| - 5.7 7.2 6.5 8.3 6.7 2.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) VKOR PF07884.9 gi|385775235|ref|YP_005647803.1| - 6.4e-26 90.8 23.5 7.1e-26 90.7 16.3 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PIN_4 PF13638.1 gi|385775236|ref|YP_005647804.1| - 0.02 14.9 0.2 0.021 14.9 0.1 1.1 1 0 0 1 1 1 0 PIN domain Ank_5 PF13857.1 gi|385775238|ref|YP_005647806.1| - 0.048 13.9 0.0 0.059 13.6 0.0 1.2 1 0 0 1 1 1 0 Ankyrin repeats (many copies) Peptidase_C15 PF01470.12 gi|385775239|ref|YP_005647807.1| - 2.6e-51 174.3 0.0 2.9e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Reo_sigmaC PF04582.7 gi|385775240|ref|YP_005647808.1| - 2.5e-11 43.3 9.3 6.7e-06 25.5 1.6 2.1 1 1 1 2 2 2 2 Reovirus sigma C capsid protein DUF16 PF01519.11 gi|385775240|ref|YP_005647808.1| - 4.1e-09 36.5 32.4 0.00014 21.9 6.7 3.8 2 1 2 4 4 3 3 Protein of unknown function DUF16 Fib_alpha PF08702.5 gi|385775240|ref|YP_005647808.1| - 2e-08 34.4 18.8 0.0014 18.7 4.1 3.3 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|385775240|ref|YP_005647808.1| - 5.6e-07 29.3 20.5 0.00059 19.4 8.2 2.1 1 1 1 2 2 2 2 IncA protein SlyX PF04102.7 gi|385775240|ref|YP_005647808.1| - 8e-07 29.3 17.1 0.07 13.5 2.6 3.6 1 1 2 3 3 3 3 SlyX DUF3972 PF13118.1 gi|385775240|ref|YP_005647808.1| - 9.6e-07 28.9 20.5 0.014 15.5 1.5 3.8 2 1 3 5 5 4 4 Protein of unknown function (DUF3972) AAA_13 PF13166.1 gi|385775240|ref|YP_005647808.1| - 2.4e-06 26.3 21.2 7.9e-06 24.6 14.7 1.7 1 1 0 1 1 1 1 AAA domain Lebercilin PF15619.1 gi|385775240|ref|YP_005647808.1| - 4e-06 26.3 17.9 9.1e-06 25.2 12.4 1.6 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF4175 PF13779.1 gi|385775240|ref|YP_005647808.1| - 4.7e-06 24.6 13.5 0.047 11.4 0.9 3.0 1 1 2 3 3 3 3 Domain of unknown function (DUF4175) ALIX_LYPXL_bnd PF13949.1 gi|385775240|ref|YP_005647808.1| - 9.1e-06 24.8 18.9 0.0025 16.8 3.8 2.2 1 1 1 2 2 2 2 ALIX V-shaped domain binding to HIV Fusion_gly PF00523.13 gi|385775240|ref|YP_005647808.1| - 2.4e-05 22.6 18.8 0.032 12.2 2.3 3.4 1 1 2 3 3 3 3 Fusion glycoprotein F0 DUF948 PF06103.6 gi|385775240|ref|YP_005647808.1| - 2.9e-05 23.8 18.6 0.0015 18.3 4.6 3.1 1 1 2 3 3 3 3 Bacterial protein of unknown function (DUF948) DUF3584 PF12128.3 gi|385775240|ref|YP_005647808.1| - 4e-05 21.2 11.7 5.2e-05 20.8 8.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Cast PF10174.4 gi|385775240|ref|YP_005647808.1| - 4.8e-05 21.6 16.9 0.00013 20.2 11.7 1.5 1 1 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF1664 PF07889.7 gi|385775240|ref|YP_005647808.1| - 7.4e-05 22.5 16.7 0.007 16.1 2.5 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) ATG16 PF08614.6 gi|385775240|ref|YP_005647808.1| - 8.5e-05 22.4 19.4 0.005 16.6 13.3 2.3 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) NPV_P10 PF05531.7 gi|385775240|ref|YP_005647808.1| - 8.9e-05 22.6 18.4 0.14 12.4 2.3 3.6 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|385775240|ref|YP_005647808.1| - 9.8e-05 21.4 21.1 0.0024 16.8 14.7 2.1 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin PF00261.15 gi|385775240|ref|YP_005647808.1| - 0.0001 21.4 17.1 0.00017 20.7 11.9 1.3 1 0 0 1 1 1 1 Tropomyosin TMEM192 PF14802.1 gi|385775240|ref|YP_005647808.1| - 0.00011 21.2 12.9 0.13 11.0 0.2 3.3 1 1 2 3 3 3 2 TMEM192 family GAT PF03127.9 gi|385775240|ref|YP_005647808.1| - 0.00011 22.1 11.4 0.061 13.2 2.1 2.4 1 1 1 2 2 2 2 GAT domain ADIP PF11559.3 gi|385775240|ref|YP_005647808.1| - 0.00011 22.0 21.7 0.025 14.4 7.7 2.3 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding BLOC1_2 PF10046.4 gi|385775240|ref|YP_005647808.1| - 0.00012 22.1 19.2 0.023 14.8 2.8 2.7 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 WEMBL PF05701.6 gi|385775240|ref|YP_005647808.1| - 0.00013 20.6 19.9 0.00018 20.0 13.8 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light DUF1626 PF07788.6 gi|385775240|ref|YP_005647808.1| - 0.00013 21.6 5.0 0.00016 21.3 2.1 2.1 1 1 1 2 2 1 1 Protein of unknown function (DUF1626) MCPsignal PF00015.16 gi|385775240|ref|YP_005647808.1| - 0.00015 21.3 20.0 0.0014 18.1 9.1 2.0 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2383 PF09537.5 gi|385775240|ref|YP_005647808.1| - 0.00018 21.7 12.7 0.087 13.0 1.0 3.5 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) EzrA PF06160.7 gi|385775240|ref|YP_005647808.1| - 0.0002 19.7 19.8 0.013 13.7 6.8 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA AAA_27 PF13514.1 gi|385775240|ref|YP_005647808.1| - 0.00021 19.1 13.4 0.00029 18.6 9.3 1.1 1 0 0 1 1 1 1 AAA domain SNARE PF05739.14 gi|385775240|ref|YP_005647808.1| - 0.00027 20.5 15.5 0.74 9.5 0.3 4.6 1 1 3 4 4 4 1 SNARE domain BRO1 PF03097.13 gi|385775240|ref|YP_005647808.1| - 0.0005 18.9 13.8 0.041 12.6 2.0 2.8 1 1 2 3 3 3 2 BRO1-like domain DUF1296 PF06972.6 gi|385775240|ref|YP_005647808.1| - 0.00056 19.8 5.6 0.51 10.3 0.2 3.7 1 1 2 3 3 3 1 Protein of unknown function (DUF1296) DUF848 PF05852.6 gi|385775240|ref|YP_005647808.1| - 0.00061 19.6 16.3 0.15 11.9 1.8 2.4 1 1 1 2 2 2 2 Gammaherpesvirus protein of unknown function (DUF848) IFT57 PF10498.4 gi|385775240|ref|YP_005647808.1| - 0.00066 18.5 15.2 0.0011 17.8 10.5 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 TPR_1 PF00515.23 gi|385775240|ref|YP_005647808.1| - 0.00091 18.7 2.8 57 3.5 0.1 6.1 2 1 5 7 7 6 0 Tetratricopeptide repeat Corona_S2 PF01601.11 gi|385775240|ref|YP_005647808.1| - 0.00094 17.4 13.6 0.22 9.6 1.2 2.9 1 1 2 3 3 3 3 Coronavirus S2 glycoprotein Transposase_22 PF02994.9 gi|385775240|ref|YP_005647808.1| - 0.0014 17.1 13.5 0.0023 16.4 9.3 1.3 1 0 0 1 1 1 1 L1 transposable element FliJ PF02050.11 gi|385775240|ref|YP_005647808.1| - 0.0014 18.6 21.0 0.28 11.2 10.3 3.5 1 1 1 2 2 2 1 Flagellar FliJ protein FliD_N PF02465.13 gi|385775240|ref|YP_005647808.1| - 0.0015 18.8 16.1 0.14 12.4 0.7 3.7 1 1 2 3 3 3 1 Flagellar hook-associated protein 2 N-terminus TMF_DNA_bd PF12329.3 gi|385775240|ref|YP_005647808.1| - 0.0016 18.2 36.2 0.0029 17.3 6.6 3.7 2 1 2 4 4 3 3 TATA element modulatory factor 1 DNA binding FlgN PF05130.7 gi|385775240|ref|YP_005647808.1| - 0.0017 18.6 18.7 0.0047 17.1 12.9 1.7 1 1 0 1 1 1 1 FlgN protein TPR_MLP1_2 PF07926.7 gi|385775240|ref|YP_005647808.1| - 0.0018 18.0 24.1 0.0062 16.2 9.2 2.3 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|385775240|ref|YP_005647808.1| - 0.0019 16.9 21.4 0.0046 15.6 14.4 1.8 1 1 1 2 2 2 2 Spc7 kinetochore protein PMEI PF04043.10 gi|385775240|ref|YP_005647808.1| - 0.002 18.0 4.2 0.005 16.7 2.2 1.8 1 1 0 1 1 1 1 Plant invertase/pectin methylesterase inhibitor Baculo_PEP_C PF04513.7 gi|385775240|ref|YP_005647808.1| - 0.0025 17.6 16.3 0.57 10.0 11.3 2.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin PF02996.12 gi|385775240|ref|YP_005647808.1| - 0.0033 17.0 21.1 0.46 10.1 3.4 4.1 1 1 4 5 5 5 2 Prefoldin subunit APG17 PF04108.7 gi|385775240|ref|YP_005647808.1| - 0.0034 16.2 15.3 0.021 13.6 4.7 2.1 1 1 1 2 2 2 1 Autophagy protein Apg17 Apc5 PF12862.2 gi|385775240|ref|YP_005647808.1| - 0.0036 17.1 7.7 4.4 7.2 0.2 4.5 1 1 5 6 6 6 0 Anaphase-promoting complex subunit 5 Herpes_U30 PF04523.8 gi|385775240|ref|YP_005647808.1| - 0.0037 14.8 5.7 0.0047 14.4 3.9 1.1 1 0 0 1 1 1 1 Herpes virus tegument protein U30 Filament PF00038.16 gi|385775240|ref|YP_005647808.1| - 0.0052 16.2 18.4 0.45 9.9 1.3 2.2 1 1 1 2 2 2 2 Intermediate filament protein V_ATPase_I PF01496.14 gi|385775240|ref|YP_005647808.1| - 0.0067 14.3 17.5 0.013 13.3 12.0 1.6 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF2570 PF10828.3 gi|385775240|ref|YP_005647808.1| - 0.0069 15.9 22.6 0.16 11.5 5.2 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF2570) Gp58 PF07902.6 gi|385775240|ref|YP_005647808.1| - 0.0073 14.5 14.3 0.17 10.0 4.6 2.1 1 1 1 2 2 2 2 gp58-like protein DASH_Spc34 PF08657.5 gi|385775240|ref|YP_005647808.1| - 0.0079 15.8 15.7 0.022 14.4 6.1 2.4 1 1 1 2 2 2 1 DASH complex subunit Spc34 Laminin_II PF06009.7 gi|385775240|ref|YP_005647808.1| - 0.0081 15.9 20.5 0.36 10.5 7.0 2.4 1 1 1 2 2 2 1 Laminin Domain II GAS PF13851.1 gi|385775240|ref|YP_005647808.1| - 0.011 14.9 21.8 0.015 14.5 7.9 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Mnd1 PF03962.10 gi|385775240|ref|YP_005647808.1| - 0.012 15.2 19.8 0.31 10.6 6.6 2.5 1 1 1 2 2 2 0 Mnd1 family COG5 PF10392.4 gi|385775240|ref|YP_005647808.1| - 0.013 15.4 14.2 0.17 11.8 9.9 2.4 1 1 0 1 1 1 0 Golgi transport complex subunit 5 HOOK PF05622.7 gi|385775240|ref|YP_005647808.1| - 0.014 13.2 20.1 0.026 12.3 6.3 2.0 1 1 1 2 2 2 0 HOOK protein PhageMin_Tail PF10145.4 gi|385775240|ref|YP_005647808.1| - 0.014 15.0 10.7 0.099 12.2 7.4 2.0 1 1 0 1 1 1 0 Phage-related minor tail protein CENP-Q PF13094.1 gi|385775240|ref|YP_005647808.1| - 0.014 15.3 22.4 0.11 12.5 4.7 3.0 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF1487 PF07368.6 gi|385775240|ref|YP_005647808.1| - 0.018 14.3 3.4 0.017 14.3 1.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1487) TMP_2 PF06791.8 gi|385775240|ref|YP_005647808.1| - 0.018 14.6 14.4 0.31 10.6 3.8 2.2 1 1 1 2 2 2 0 Prophage tail length tape measure protein Spectrin PF00435.16 gi|385775240|ref|YP_005647808.1| - 0.019 15.2 19.7 0.63 10.3 7.1 2.8 1 1 2 3 3 3 0 Spectrin repeat Filo_VP35 PF02097.10 gi|385775240|ref|YP_005647808.1| - 0.02 14.1 14.7 1 8.5 3.1 3.2 1 1 2 3 3 3 0 Filoviridae VP35 Vps53_N PF04100.7 gi|385775240|ref|YP_005647808.1| - 0.02 13.6 18.7 0.13 11.0 7.5 2.1 1 1 1 2 2 2 0 Vps53-like, N-terminal Hemerythrin PF01814.18 gi|385775240|ref|YP_005647808.1| - 0.023 14.8 1.0 1 9.5 0.1 2.8 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain TFR_dimer PF04253.10 gi|385775240|ref|YP_005647808.1| - 0.023 14.2 7.8 5.1 6.6 0.3 4.1 1 1 2 3 3 3 0 Transferrin receptor-like dimerisation domain Acyl-CoA_dh_C PF12806.2 gi|385775240|ref|YP_005647808.1| - 0.024 14.4 12.4 9.5e+02 -0.4 8.6 3.8 1 1 0 1 1 0 0 Acetyl-CoA dehydrogenase C-terminal like DUF3818 PF12825.2 gi|385775240|ref|YP_005647808.1| - 0.024 13.3 9.2 0.33 9.5 0.7 2.7 1 1 1 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) MscS_porin PF12795.2 gi|385775240|ref|YP_005647808.1| - 0.025 13.9 20.3 0.049 12.9 14.1 1.4 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain Laminin_I PF06008.9 gi|385775240|ref|YP_005647808.1| - 0.025 13.8 23.9 0.19 11.0 3.5 2.2 1 1 2 3 3 3 0 Laminin Domain I CK2S PF15011.1 gi|385775240|ref|YP_005647808.1| - 0.028 14.2 14.0 0.35 10.6 0.8 2.5 1 1 1 2 2 2 0 Casein Kinase 2 substrate P4Ha_N PF08336.6 gi|385775240|ref|YP_005647808.1| - 0.031 14.0 14.2 0.2 11.4 1.2 3.7 1 1 3 4 4 4 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Macoilin PF09726.4 gi|385775240|ref|YP_005647808.1| - 0.031 12.5 15.3 0.039 12.2 10.6 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF2347 PF09804.4 gi|385775240|ref|YP_005647808.1| - 0.032 13.5 4.0 0.064 12.5 2.7 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2347) LXG PF04740.7 gi|385775240|ref|YP_005647808.1| - 0.032 14.0 15.7 0.1 12.3 9.4 2.2 1 1 0 1 1 1 0 LXG domain of WXG superfamily Flu_NS2 PF00601.14 gi|385775240|ref|YP_005647808.1| - 0.033 14.3 4.4 5.3 7.3 2.6 2.9 1 1 1 2 2 2 0 Influenza non-structural protein (NS2) H-kinase_dim PF02895.9 gi|385775240|ref|YP_005647808.1| - 0.034 14.4 15.5 7.4e+03 -2.7 10.8 4.0 1 1 0 1 1 0 0 Signal transducing histidine kinase, homodimeric domain Rootletin PF15035.1 gi|385775240|ref|YP_005647808.1| - 0.038 13.9 14.9 0.13 12.2 10.3 1.8 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Myosin_tail_1 PF01576.14 gi|385775240|ref|YP_005647808.1| - 0.038 11.7 21.0 0.11 10.1 14.1 1.6 1 1 0 1 1 1 0 Myosin tail ATG_C PF09333.6 gi|385775240|ref|YP_005647808.1| - 0.042 14.0 10.5 0.27 11.3 0.8 3.3 1 1 2 3 3 3 0 ATG C terminal domain Med9 PF07544.8 gi|385775240|ref|YP_005647808.1| - 0.045 13.4 20.2 1.8 8.3 3.9 3.6 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Cauli_AT PF03233.8 gi|385775240|ref|YP_005647808.1| - 0.046 13.4 17.4 1.1 8.9 5.2 3.4 1 1 2 3 3 3 0 Aphid transmission protein Pinin_SDK_N PF04697.8 gi|385775240|ref|YP_005647808.1| - 0.052 13.5 8.3 3.7 7.5 0.2 3.5 1 1 2 4 4 4 0 pinin/SDK conserved region MttA_Hcf106 PF02416.11 gi|385775240|ref|YP_005647808.1| - 0.054 12.6 5.1 13 4.9 0.1 3.6 3 0 0 3 3 3 0 mttA/Hcf106 family ING PF12998.2 gi|385775240|ref|YP_005647808.1| - 0.071 13.3 15.0 0.069 13.4 6.0 2.7 2 1 1 3 3 2 0 Inhibitor of growth proteins N-terminal histone-binding GlnE PF03710.10 gi|385775240|ref|YP_005647808.1| - 0.077 12.2 9.6 2.1 7.5 1.1 2.8 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase Prominin PF05478.6 gi|385775240|ref|YP_005647808.1| - 0.082 10.4 16.9 0.28 8.6 3.9 2.2 1 1 1 2 2 2 0 Prominin Syntaxin PF00804.20 gi|385775240|ref|YP_005647808.1| - 0.083 13.0 20.3 0.39 10.8 7.3 2.8 1 1 1 2 2 2 0 Syntaxin NEP PF10167.4 gi|385775240|ref|YP_005647808.1| - 0.086 12.5 8.8 0.43 10.3 4.8 2.5 1 1 2 3 3 3 0 Uncharacterised conserved protein Dimerisation PF08100.6 gi|385775240|ref|YP_005647808.1| - 0.1 12.4 2.3 12 5.8 0.1 2.9 1 1 2 3 3 2 0 Dimerisation domain MT0933_antitox PF14013.1 gi|385775240|ref|YP_005647808.1| - 0.1 12.7 9.7 54 3.9 0.0 5.8 2 1 3 5 5 4 0 MT0933-like antitoxin protein DUF4559 PF15112.1 gi|385775240|ref|YP_005647808.1| - 0.11 11.6 15.1 0.9 8.6 10.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) BicD PF09730.4 gi|385775240|ref|YP_005647808.1| - 0.11 10.8 20.2 0.18 10.1 14.0 1.3 1 1 0 1 1 1 0 Microtubule-associated protein Bicaudal-D DUF1202 PF06717.6 gi|385775240|ref|YP_005647808.1| - 0.12 11.6 11.8 0.075 12.2 3.7 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1202) DASH_Duo1 PF08651.5 gi|385775240|ref|YP_005647808.1| - 0.14 11.7 14.1 4.6 6.9 1.2 4.1 1 1 4 5 5 5 0 DASH complex subunit Duo1 Bacillus_HBL PF05791.6 gi|385775240|ref|YP_005647808.1| - 0.14 11.5 18.7 1.3 8.3 4.9 2.6 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF972 PF06156.8 gi|385775240|ref|YP_005647808.1| - 0.14 12.5 17.5 0.83 10.0 1.3 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF972) Serine_rich PF08824.5 gi|385775240|ref|YP_005647808.1| - 0.14 11.8 10.1 0.99 9.1 0.5 2.3 1 1 1 2 2 2 0 Serine rich protein interaction domain AATF-Che1 PF13339.1 gi|385775240|ref|YP_005647808.1| - 0.15 12.2 14.0 5.2 7.2 1.0 3.0 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF3086 PF11285.3 gi|385775240|ref|YP_005647808.1| - 0.15 10.8 5.4 0.23 10.2 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) TPR_12 PF13424.1 gi|385775240|ref|YP_005647808.1| - 0.16 11.9 3.7 31 4.6 0.5 4.5 2 1 3 5 5 4 0 Tetratricopeptide repeat FH2 PF02181.18 gi|385775240|ref|YP_005647808.1| - 0.16 10.8 14.1 1.6 7.5 1.5 2.3 1 1 1 2 2 2 0 Formin Homology 2 Domain KSR1-SAM PF13543.1 gi|385775240|ref|YP_005647808.1| - 0.16 11.7 7.5 1.7 8.4 0.7 2.5 1 1 1 2 2 2 0 SAM like domain present in kinase suppressor RAS 1 DUF4463 PF14703.1 gi|385775240|ref|YP_005647808.1| - 0.2 12.2 8.8 31 5.1 0.8 4.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4463) ClpS PF02617.12 gi|385775240|ref|YP_005647808.1| - 0.2 11.3 5.2 16 5.2 0.2 3.3 1 1 2 3 3 3 0 ATP-dependent Clp protease adaptor protein ClpS TMPIT PF07851.8 gi|385775240|ref|YP_005647808.1| - 0.2 10.6 16.5 0.18 10.8 7.1 2.2 1 1 1 2 2 2 0 TMPIT-like protein Mod_r PF07200.8 gi|385775240|ref|YP_005647808.1| - 0.21 11.4 21.6 0.9 9.4 5.1 2.5 2 1 1 3 3 2 0 Modifier of rudimentary (Mod(r)) protein HsbA PF12296.3 gi|385775240|ref|YP_005647808.1| - 0.21 11.4 12.2 0.68 9.7 7.2 2.5 1 1 0 1 1 1 0 Hydrophobic surface binding protein A Tropomyosin_1 PF12718.2 gi|385775240|ref|YP_005647808.1| - 0.21 11.3 24.0 0.93 9.3 8.7 2.3 1 1 1 2 2 2 0 Tropomyosin like DUF4201 PF13870.1 gi|385775240|ref|YP_005647808.1| - 0.24 10.8 18.0 7.4 5.9 12.5 3.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) UPF0242 PF06785.6 gi|385775240|ref|YP_005647808.1| - 0.25 10.0 13.1 0.37 9.4 9.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) DUF641 PF04859.7 gi|385775240|ref|YP_005647808.1| - 0.25 11.0 18.3 10 5.8 2.4 3.4 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) RmuC PF02646.11 gi|385775240|ref|YP_005647808.1| - 0.26 10.1 19.5 2.2 7.0 3.8 2.9 1 1 1 2 2 2 0 RmuC family ECM11 PF15463.1 gi|385775240|ref|YP_005647808.1| - 0.27 11.5 9.8 0.94 9.7 2.1 2.5 1 1 1 2 2 2 0 Extracellular mutant protein 11 Syntaxin-6_N PF09177.6 gi|385775240|ref|YP_005647808.1| - 0.27 11.6 14.1 5 7.5 4.5 2.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF2680 PF10925.3 gi|385775240|ref|YP_005647808.1| - 0.28 11.0 0.1 0.28 11.0 0.1 3.8 2 2 1 3 3 1 0 Protein of unknown function (DUF2680) TMF_TATA_bd PF12325.3 gi|385775240|ref|YP_005647808.1| - 0.29 10.8 20.5 0.34 10.6 11.0 2.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding FUSC PF04632.7 gi|385775240|ref|YP_005647808.1| - 0.31 9.3 1.0 0.38 9.1 0.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family HTH_Tnp_Mu_2 PF09039.6 gi|385775240|ref|YP_005647808.1| - 0.33 10.7 3.7 52 3.6 0.2 3.4 1 1 3 4 4 4 0 Mu DNA binding, I gamma subdomain DivIVA PF05103.8 gi|385775240|ref|YP_005647808.1| - 0.35 10.9 26.5 0.67 10.0 2.7 2.6 2 1 1 3 3 2 0 DivIVA protein COG2 PF06148.6 gi|385775240|ref|YP_005647808.1| - 0.36 10.7 18.8 1.4 8.7 2.2 3.5 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 FimP PF09766.4 gi|385775240|ref|YP_005647808.1| - 0.36 9.8 22.4 0.14 11.2 4.4 2.7 2 1 1 3 3 2 0 Fms-interacting protein zf-C4H2 PF10146.4 gi|385775240|ref|YP_005647808.1| - 0.37 10.7 14.6 1.1 9.1 10.1 1.8 1 1 0 1 1 1 0 Zinc finger-containing protein CCDC155 PF14662.1 gi|385775240|ref|YP_005647808.1| - 0.38 10.3 21.0 2.8 7.4 14.7 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 RTBV_P46 PF06216.6 gi|385775240|ref|YP_005647808.1| - 0.38 9.5 8.7 2.8 6.6 0.7 2.5 1 1 1 2 2 2 0 Rice tungro bacilliform virus P46 protein MutS_III PF05192.13 gi|385775240|ref|YP_005647808.1| - 0.39 10.4 5.4 0.78 9.4 3.7 1.7 1 1 0 1 1 1 0 MutS domain III DUF445 PF04286.7 gi|385775240|ref|YP_005647808.1| - 0.4 10.1 15.3 0.052 13.0 7.8 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF445) Sec8_exocyst PF04048.9 gi|385775240|ref|YP_005647808.1| - 0.41 10.2 14.3 4.5 6.8 9.2 2.3 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Phage_GP20 PF06810.6 gi|385775240|ref|YP_005647808.1| - 0.42 10.0 28.3 0.19 11.1 4.1 3.4 2 1 0 3 3 2 0 Phage minor structural protein GP20 APG6 PF04111.7 gi|385775240|ref|YP_005647808.1| - 0.42 9.5 19.1 2 7.3 13.1 1.9 1 1 0 1 1 1 0 Autophagy protein Apg6 BTAD PF03704.12 gi|385775240|ref|YP_005647808.1| - 0.43 10.8 3.2 1.8 8.8 2.1 2.0 1 1 0 1 1 1 0 Bacterial transcriptional activator domain DUF1804 PF08822.6 gi|385775240|ref|YP_005647808.1| - 0.44 10.2 7.1 0.44 10.2 1.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1804) DUF812 PF05667.6 gi|385775240|ref|YP_005647808.1| - 0.44 9.0 22.5 1.4 7.2 15.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF241 PF03087.9 gi|385775240|ref|YP_005647808.1| - 0.44 10.0 12.6 0.84 9.0 8.8 1.5 1 0 0 1 1 1 0 Arabidopsis protein of unknown function Orbi_VP5 PF00901.12 gi|385775240|ref|YP_005647808.1| - 0.47 8.6 21.4 0.12 10.5 7.1 2.0 1 1 1 2 2 2 0 Orbivirus outer capsid protein VP5 EMP24_GP25L PF01105.19 gi|385775240|ref|YP_005647808.1| - 0.48 10.1 12.1 4.6 6.9 1.2 2.9 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF1319 PF07028.6 gi|385775240|ref|YP_005647808.1| - 0.5 10.5 18.8 2.2 8.5 2.8 3.5 1 1 1 2 2 1 0 Protein of unknown function (DUF1319) Tweety PF04906.8 gi|385775240|ref|YP_005647808.1| - 0.53 8.6 12.7 0.43 8.9 5.8 2.0 1 1 2 3 3 3 0 Tweety PXA PF02194.10 gi|385775240|ref|YP_005647808.1| - 0.54 9.8 10.6 6.9 6.1 7.4 2.1 1 1 0 1 1 1 0 PXA domain BRE1 PF08647.6 gi|385775240|ref|YP_005647808.1| - 0.59 10.1 21.2 2.5 8.1 9.5 3.2 1 1 2 3 3 3 0 BRE1 E3 ubiquitin ligase ERM PF00769.14 gi|385775240|ref|YP_005647808.1| - 0.74 9.2 21.0 0.36 10.3 7.9 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family YlbD_coat PF14071.1 gi|385775240|ref|YP_005647808.1| - 0.81 9.7 14.6 2e+03 -1.2 10.1 3.4 1 1 0 1 1 0 0 Putative coat protein Troponin PF00992.15 gi|385775240|ref|YP_005647808.1| - 0.82 9.7 25.2 0.14 12.2 6.0 2.8 2 1 1 3 3 2 0 Troponin Jacalin PF01419.12 gi|385775240|ref|YP_005647808.1| - 0.84 9.5 14.3 6.5 6.6 0.3 3.9 2 1 1 3 3 3 0 Jacalin-like lectin domain DUF3571 PF12095.3 gi|385775240|ref|YP_005647808.1| - 0.88 9.8 8.7 13 6.1 0.3 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF3571) VSG_B PF13206.1 gi|385775240|ref|YP_005647808.1| - 0.89 8.6 10.9 1.3 8.0 7.5 1.3 1 0 0 1 1 1 0 Trypanosomal VSG domain DUF4298 PF14131.1 gi|385775240|ref|YP_005647808.1| - 0.91 9.4 11.3 25 4.8 0.3 4.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4298) DUF2379 PF09543.5 gi|385775240|ref|YP_005647808.1| - 0.93 9.4 8.1 2 8.3 4.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) HAP1_N PF04849.8 gi|385775240|ref|YP_005647808.1| - 1.1 8.1 21.1 3.6 6.4 9.2 2.2 1 1 1 2 2 2 0 HAP1 N-terminal conserved region DUF904 PF06005.7 gi|385775240|ref|YP_005647808.1| - 1.1 9.5 25.0 3.3 8.0 5.1 4.0 1 1 1 2 2 1 0 Protein of unknown function (DUF904) ALMT PF11744.3 gi|385775240|ref|YP_005647808.1| - 1.2 7.6 13.6 3.4 6.2 9.1 1.7 1 1 1 2 2 2 0 Aluminium activated malate transporter IKKbetaNEMObind PF12179.3 gi|385775240|ref|YP_005647808.1| - 1.2 8.9 5.6 52 3.7 0.0 4.0 4 2 0 4 4 3 0 I-kappa-kinase-beta NEMO binding domain DUF2201_N PF13203.1 gi|385775240|ref|YP_005647808.1| - 1.4 8.0 9.7 5.8 5.9 6.7 1.8 1 1 0 1 1 1 0 Putative metallopeptidase domain DUF651 PF04895.7 gi|385775240|ref|YP_005647808.1| - 1.5 8.4 8.4 6.9 6.3 0.6 3.3 1 1 3 4 4 4 0 Archaeal protein of unknown function (DUF651) SPX PF03105.14 gi|385775240|ref|YP_005647808.1| - 1.6 8.4 7.2 2.4 7.8 5.0 1.3 1 0 0 1 1 1 0 SPX domain AbiH PF14253.1 gi|385775240|ref|YP_005647808.1| - 1.7 8.1 11.3 27 4.2 7.8 2.4 1 1 0 1 1 1 0 Bacteriophage abortive infection AbiH Seryl_tRNA_N PF02403.17 gi|385775240|ref|YP_005647808.1| - 1.8 8.6 27.1 1.9 8.5 8.8 3.1 2 1 2 4 4 3 0 Seryl-tRNA synthetase N-terminal domain HrpB7 PF09486.5 gi|385775240|ref|YP_005647808.1| - 1.8 8.4 11.6 1.7 8.5 6.8 1.8 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF2422 PF10337.4 gi|385775240|ref|YP_005647808.1| - 2 7.1 7.9 0.81 8.4 0.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2422) Glutaredoxin2_C PF04399.8 gi|385775240|ref|YP_005647808.1| - 2.1 7.9 12.4 3.9 7.0 1.1 3.4 1 1 3 4 4 4 0 Glutaredoxin 2, C terminal domain GLE1 PF07817.8 gi|385775240|ref|YP_005647808.1| - 2.2 7.1 16.2 1.3 7.9 2.6 2.2 1 1 1 2 2 2 0 GLE1-like protein Fzo_mitofusin PF04799.8 gi|385775240|ref|YP_005647808.1| - 2.2 7.6 14.8 0.65 9.3 0.9 3.1 1 1 3 4 4 4 0 fzo-like conserved region NAAA-beta PF15508.1 gi|385775240|ref|YP_005647808.1| - 2.3 8.6 5.5 27 5.2 0.2 3.5 2 1 2 4 4 3 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase YjcZ PF13990.1 gi|385775240|ref|YP_005647808.1| - 2.3 7.2 13.2 5.5 6.0 3.1 2.1 1 1 1 2 2 2 0 YjcZ-like protein Cytochrom_C552 PF02335.10 gi|385775240|ref|YP_005647808.1| - 2.4 6.7 13.8 5.7 5.5 9.6 1.4 1 1 0 1 1 1 0 Cytochrome c552 Peptidase_C6 PF00851.13 gi|385775240|ref|YP_005647808.1| - 2.4 6.6 11.4 4.7 5.7 7.9 1.5 1 1 0 1 1 1 0 Helper component proteinase Cytochrom_C_2 PF01322.15 gi|385775240|ref|YP_005647808.1| - 2.5 8.6 9.9 66 4.0 6.6 2.4 1 1 0 1 1 1 0 Cytochrome C' HrpJ PF07201.6 gi|385775240|ref|YP_005647808.1| - 2.9 7.8 13.9 3.1 7.7 7.5 2.1 1 1 1 2 2 2 0 HrpJ-like domain DUF3450 PF11932.3 gi|385775240|ref|YP_005647808.1| - 3 7.0 20.9 1.7 7.8 8.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Sas10_Utp3 PF04000.10 gi|385775240|ref|YP_005647808.1| - 3.3 7.9 14.4 1.5e+04 -5.4 10.0 4.3 1 1 0 1 1 0 0 Sas10/Utp3/C1D family DUF2076 PF09849.4 gi|385775240|ref|YP_005647808.1| - 3.5 7.6 14.9 58 3.6 10.4 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) DUF2664 PF10867.3 gi|385775240|ref|YP_005647808.1| - 3.5 8.2 15.2 4.7 7.8 2.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2664) Cluap1 PF10234.4 gi|385775240|ref|YP_005647808.1| - 3.8 6.6 21.1 12 4.9 5.3 2.3 1 1 1 2 2 2 0 Clusterin-associated protein-1 WHEP-TRS PF00458.15 gi|385775240|ref|YP_005647808.1| - 4.5 7.0 22.6 5 6.8 0.5 5.2 5 0 0 5 5 4 0 WHEP-TRS domain DUF2968 PF11180.3 gi|385775240|ref|YP_005647808.1| - 4.5 6.6 22.7 1.1 8.6 5.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) Hormone_1 PF00103.15 gi|385775240|ref|YP_005647808.1| - 4.5 6.5 8.2 13 5.0 5.4 1.9 1 1 0 1 1 1 0 Somatotropin hormone family DUF2400 PF09674.5 gi|385775240|ref|YP_005647808.1| - 4.6 6.8 9.7 56 3.3 5.8 2.5 1 1 1 2 2 1 0 Protein of unknown function (DUF2400) Sec20 PF03908.8 gi|385775240|ref|YP_005647808.1| - 4.8 6.9 12.8 13 5.5 1.2 3.2 1 1 2 3 3 3 0 Sec20 COG6 PF06419.6 gi|385775240|ref|YP_005647808.1| - 4.8 5.1 18.6 2.5 6.0 4.9 2.4 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 Striatin PF08232.7 gi|385775240|ref|YP_005647808.1| - 5.1 7.4 18.5 8.5 6.6 8.2 2.7 1 1 1 2 2 2 0 Striatin family OEP PF02321.13 gi|385775240|ref|YP_005647808.1| - 5.5 6.5 14.6 3.5 7.1 8.6 1.7 1 1 0 1 1 1 0 Outer membrane efflux protein DUF4200 PF13863.1 gi|385775240|ref|YP_005647808.1| - 5.8 6.8 22.3 17 5.3 2.0 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) TMCO5 PF14992.1 gi|385775240|ref|YP_005647808.1| - 5.8 5.9 19.8 12 4.9 13.7 1.6 1 1 0 1 1 1 0 TMCO5 family LOH1CR12 PF10158.4 gi|385775240|ref|YP_005647808.1| - 6.4 6.5 10.9 19 5.0 2.0 2.5 1 1 1 2 2 2 0 Tumour suppressor protein DUF4094 PF13334.1 gi|385775240|ref|YP_005647808.1| - 6.7 7.1 17.6 19 5.7 2.4 3.9 1 1 3 4 4 3 0 Domain of unknown function (DUF4094) MMPL PF03176.10 gi|385775240|ref|YP_005647808.1| - 6.9 5.2 8.3 13 4.3 5.7 1.4 1 1 0 1 1 1 0 MMPL family HAUS6_N PF14661.1 gi|385775240|ref|YP_005647808.1| - 7.1 5.9 12.1 11 5.2 8.4 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DUF1759 PF03564.10 gi|385775240|ref|YP_005647808.1| - 7.4 6.3 15.9 0.46 10.3 2.5 2.9 2 1 2 4 4 3 0 Protein of unknown function (DUF1759) SYCE1 PF15233.1 gi|385775240|ref|YP_005647808.1| - 8 6.4 26.7 13 5.6 5.6 3.2 2 1 2 4 4 3 0 Synaptonemal complex central element protein 1 WXG100 PF06013.7 gi|385775240|ref|YP_005647808.1| - 8 6.5 13.0 39 4.3 2.0 3.2 1 1 1 2 2 2 0 Proteins of 100 residues with WXG DUF1019 PF06254.6 gi|385775240|ref|YP_005647808.1| - 8.1 6.6 8.8 15 5.8 0.6 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1019) Ded_cyto PF06920.8 gi|385775240|ref|YP_005647808.1| - 9.4 5.4 12.6 92 2.2 8.8 2.8 1 1 0 1 1 1 0 Dedicator of cytokinesis FlaC_arch PF05377.6 gi|385775240|ref|YP_005647808.1| - 9.9 6.1 17.4 19 5.2 1.5 4.3 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) Metallophos_2 PF12850.2 gi|385775241|ref|YP_005647809.1| - 5.7e-12 45.7 0.2 6.4e-11 42.3 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385775241|ref|YP_005647809.1| - 4e-06 26.3 0.6 0.0064 15.9 0.0 2.5 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase MIP PF00230.15 gi|385775242|ref|YP_005647810.1| - 2.4e-41 141.6 8.4 3.2e-41 141.2 5.8 1.1 1 0 0 1 1 1 1 Major intrinsic protein FGGY_N PF00370.16 gi|385775243|ref|YP_005647811.1| - 9.5e-78 260.8 0.0 1.4e-77 260.2 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|385775243|ref|YP_005647811.1| - 5.1e-62 209.0 0.0 8.1e-62 208.3 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain COXG PF06240.8 gi|385775244|ref|YP_005647812.1| - 0.1 12.2 0.1 0.11 12.1 0.0 1.0 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) HTH_24 PF13412.1 gi|385775245|ref|YP_005647813.1| - 5.3e-21 73.7 9.4 6.7e-17 60.6 0.7 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385775245|ref|YP_005647813.1| - 4.5e-15 54.9 4.7 7.8e-12 44.5 0.1 2.5 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|385775245|ref|YP_005647813.1| - 1.6e-06 27.7 0.4 0.0014 18.2 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|385775245|ref|YP_005647813.1| - 1.2e-05 24.9 0.4 0.00023 20.8 0.0 2.3 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|385775245|ref|YP_005647813.1| - 6.7e-05 22.4 0.0 0.00033 20.2 0.0 1.9 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.12 gi|385775245|ref|YP_005647813.1| - 0.00011 21.6 1.3 0.34 10.4 0.3 2.5 2 0 0 2 2 2 2 TFIIE alpha subunit HTH_34 PF13601.1 gi|385775245|ref|YP_005647813.1| - 0.00014 21.8 0.1 0.05 13.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385775245|ref|YP_005647813.1| - 0.00024 20.7 0.5 0.031 13.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|385775245|ref|YP_005647813.1| - 0.0021 18.3 0.2 0.13 12.6 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|385775245|ref|YP_005647813.1| - 0.011 15.3 0.7 0.025 14.1 0.1 1.8 2 0 0 2 2 2 0 HTH domain HTH_28 PF13518.1 gi|385775245|ref|YP_005647813.1| - 0.017 15.1 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.6 gi|385775245|ref|YP_005647813.1| - 0.026 14.3 0.1 7.4 6.5 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.15 gi|385775245|ref|YP_005647813.1| - 0.042 13.9 0.8 4 7.6 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator HTH_Mga PF08280.6 gi|385775245|ref|YP_005647813.1| - 0.08 12.7 1.1 0.42 10.3 0.0 2.4 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.7 gi|385775245|ref|YP_005647813.1| - 0.085 12.4 0.3 0.85 9.2 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_psq PF05225.11 gi|385775245|ref|YP_005647813.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain MMPL PF03176.10 gi|385775246|ref|YP_005647814.1| - 4.5e-48 163.6 17.6 4.1e-26 91.4 0.2 2.2 2 0 0 2 2 2 2 MMPL family Acyl-CoA_dh_1 PF00441.19 gi|385775247|ref|YP_005647815.1| - 1e-31 110.0 0.1 1.8e-31 109.2 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|385775247|ref|YP_005647815.1| - 1.9e-09 36.9 0.0 3.5e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|385775247|ref|YP_005647815.1| - 1e-06 28.9 0.0 2e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|385775248|ref|YP_005647816.1| - 1.1e-67 228.3 0.0 1.2e-67 228.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385775248|ref|YP_005647816.1| - 1e-11 45.5 0.0 1.9e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.1 gi|385775249|ref|YP_005647817.1| - 7.6e-16 57.9 0.0 1.3e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|385775249|ref|YP_005647817.1| - 2.4e-06 26.1 0.0 3.9e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme CbiZ PF01955.13 gi|385775250|ref|YP_005647818.1| - 2.3e-35 122.1 0.0 2.8e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase MFS_1 PF07690.11 gi|385775251|ref|YP_005647819.1| - 2.6e-21 75.7 69.0 4.7e-20 71.6 26.4 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775251|ref|YP_005647819.1| - 4.9e-12 45.1 33.0 4.9e-11 41.8 22.9 2.4 1 1 0 1 1 1 1 Sugar (and other) transporter DUF2324 PF10086.4 gi|385775252|ref|YP_005647820.1| - 0.021 14.0 0.1 0.025 13.7 0.1 1.2 1 0 0 1 1 1 0 Putative membrane peptidase family (DUF2324) OrfB_IS605 PF01385.14 gi|385775253|ref|YP_005647821.1| - 3.5e-26 91.9 6.0 4.5e-26 91.6 4.2 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775253|ref|YP_005647821.1| - 8.5e-24 83.0 0.0 1.7e-23 82.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HxlR PF01638.12 gi|385775253|ref|YP_005647821.1| - 0.023 14.3 0.4 0.28 10.8 0.1 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix TF_Zn_Ribbon PF08271.7 gi|385775253|ref|YP_005647821.1| - 0.024 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|385775253|ref|YP_005647821.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385775253|ref|YP_005647821.1| - 0.12 11.9 0.2 0.41 10.1 0.1 1.8 2 1 0 2 2 2 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385775253|ref|YP_005647821.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385775253|ref|YP_005647821.1| - 0.3 10.9 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385775253|ref|YP_005647821.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385775253|ref|YP_005647821.1| - 5.9 6.8 5.5 5 7.0 0.4 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1232 PF06803.7 gi|385775256|ref|YP_005647824.1| - 1.2 8.6 4.9 0.51 9.8 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1232) DUF1648 PF07853.6 gi|385775257|ref|YP_005647825.1| - 0.032 13.7 0.3 0.032 13.7 0.2 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1648) DUF1212 PF06738.7 gi|385775257|ref|YP_005647825.1| - 0.061 12.7 0.2 0.061 12.7 0.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1212) GntR PF00392.16 gi|385775258|ref|YP_005647826.1| - 8.5e-14 50.7 0.0 1.3e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|385775258|ref|YP_005647826.1| - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|385775258|ref|YP_005647826.1| - 0.0024 17.4 0.0 0.0097 15.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|385775258|ref|YP_005647826.1| - 0.017 14.6 0.0 0.039 13.5 0.0 1.6 1 1 1 2 2 2 0 LexA DNA binding domain RPA_C PF08784.6 gi|385775258|ref|YP_005647826.1| - 0.13 12.7 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal DUF973 PF06157.6 gi|385775263|ref|YP_005647831.1| - 7.2e-91 304.0 50.6 8.1e-91 303.9 35.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Fer4_9 PF13187.1 gi|385775264|ref|YP_005647832.1| - 0.0084 16.3 12.9 0.027 14.7 8.5 2.1 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385775264|ref|YP_005647832.1| - 0.031 14.6 1.6 0.031 14.6 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385775264|ref|YP_005647832.1| - 0.057 13.3 14.8 0.068 13.1 2.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385775264|ref|YP_005647832.1| - 0.069 13.5 12.1 0.13 12.7 1.5 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385775264|ref|YP_005647832.1| - 0.25 11.1 13.9 0.14 12.0 2.1 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385775264|ref|YP_005647832.1| - 0.66 10.3 8.0 1.9 8.8 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385775264|ref|YP_005647832.1| - 2.6 8.1 12.9 0.43 10.6 0.9 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|385775265|ref|YP_005647833.1| - 2.1e-34 119.0 0.0 5.1e-34 117.7 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|385775265|ref|YP_005647833.1| - 8.2e-13 47.9 0.1 1.5e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.16 gi|385775265|ref|YP_005647833.1| - 2.8e-08 33.5 0.0 7e-08 32.2 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|385775265|ref|YP_005647833.1| - 7.9e-05 22.3 1.1 0.00018 21.2 0.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RNR_N PF08343.5 gi|385775265|ref|YP_005647833.1| - 0.032 14.0 1.2 0.13 12.0 0.8 2.1 1 0 0 1 1 1 0 Ribonucleotide reductase N-terminal Fer4_11 PF13247.1 gi|385775266|ref|YP_005647834.1| - 9e-17 60.7 20.2 6.5e-16 58.0 9.2 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385775266|ref|YP_005647834.1| - 2.4e-16 59.8 23.6 6.3e-09 36.0 4.6 2.8 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385775266|ref|YP_005647834.1| - 3.1e-12 46.0 43.2 3.4e-07 29.9 3.1 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385775266|ref|YP_005647834.1| - 5.5e-12 45.7 23.3 1.1e-07 31.9 4.3 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385775266|ref|YP_005647834.1| - 4.1e-11 41.9 36.1 5.2e-08 32.1 2.5 6.0 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385775266|ref|YP_005647834.1| - 3.1e-09 36.2 35.5 1.7e-05 24.4 1.9 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|385775266|ref|YP_005647834.1| - 1.6e-08 34.4 18.2 0.00026 20.9 3.8 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385775266|ref|YP_005647834.1| - 4.1e-08 32.7 38.4 0.00013 21.7 2.1 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|385775266|ref|YP_005647834.1| - 1.9e-06 27.9 44.4 0.029 14.9 3.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385775266|ref|YP_005647834.1| - 1.2e-05 25.5 23.0 0.0013 19.0 3.6 3.3 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385775266|ref|YP_005647834.1| - 2.2e-05 24.2 27.1 7.5e-05 22.5 5.2 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385775266|ref|YP_005647834.1| - 0.0008 19.5 37.8 0.0095 16.2 1.6 4.8 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385775266|ref|YP_005647834.1| - 0.0017 18.8 0.3 0.0017 18.8 0.2 3.9 4 1 0 4 4 4 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|385775266|ref|YP_005647834.1| - 0.01 16.5 26.4 0.14 12.8 4.4 3.8 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|385775266|ref|YP_005647834.1| - 0.18 12.2 0.3 0.18 12.2 0.2 4.4 5 0 0 5 5 4 0 4Fe-4S single cluster domain NrfD PF03916.9 gi|385775267|ref|YP_005647835.1| - 1.4e-67 228.3 16.2 1.4e-67 228.3 11.2 1.6 2 0 0 2 2 2 1 Polysulphide reductase, NrfD DUF2839 PF10999.3 gi|385775267|ref|YP_005647835.1| - 0.21 11.6 12.3 0.71 9.9 0.0 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF2839) Fer4_7 PF12838.2 gi|385775268|ref|YP_005647836.1| - 3.8e-18 65.5 33.5 1.7e-10 41.1 8.0 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385775268|ref|YP_005647836.1| - 3.1e-17 61.3 39.6 2.1e-06 27.0 1.9 5.1 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385775268|ref|YP_005647836.1| - 2.2e-15 55.7 34.3 0.00014 21.5 5.1 4.9 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385775268|ref|YP_005647836.1| - 2.8e-15 56.3 31.7 1.3e-07 31.7 5.5 4.0 3 2 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385775268|ref|YP_005647836.1| - 3.3e-14 52.4 43.7 1.1e-09 37.8 7.2 3.8 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385775268|ref|YP_005647836.1| - 1.3e-13 51.4 25.4 0.0024 18.5 1.7 4.7 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|385775268|ref|YP_005647836.1| - 3.2e-13 49.3 35.3 5.3e-08 32.5 7.7 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385775268|ref|YP_005647836.1| - 6.5e-13 47.7 37.8 2.4e-06 27.1 2.1 4.9 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385775268|ref|YP_005647836.1| - 1.7e-08 34.7 25.5 0.0026 18.1 0.2 4.8 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385775268|ref|YP_005647836.1| - 1e-07 31.8 31.0 0.001 19.0 7.8 4.3 1 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385775268|ref|YP_005647836.1| - 2.4e-07 31.2 22.3 0.0016 18.9 1.1 4.5 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|385775268|ref|YP_005647836.1| - 2e-05 24.5 50.0 0.002 18.3 1.2 5.7 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385775268|ref|YP_005647836.1| - 6.7e-05 23.1 33.3 0.063 13.6 0.2 5.0 4 2 3 7 7 6 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385775268|ref|YP_005647836.1| - 0.00011 22.5 26.4 0.0043 17.3 0.2 5.0 5 0 0 5 5 4 3 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|385775268|ref|YP_005647836.1| - 0.00025 20.8 19.2 0.015 15.1 2.7 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385775268|ref|YP_005647836.1| - 0.062 13.8 53.2 0.15 12.6 2.3 5.7 6 0 0 6 6 5 0 4Fe-4S binding domain Nitrate_red_del PF02613.10 gi|385775269|ref|YP_005647837.1| - 3.7e-21 75.3 0.0 4.9e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit TetR_C_8 PF14278.1 gi|385775269|ref|YP_005647837.1| - 0.05 13.9 2.0 0.11 12.8 0.1 2.2 2 0 0 2 2 2 0 Transcriptional regulator C-terminal region His_kinase PF06580.8 gi|385775269|ref|YP_005647837.1| - 0.11 12.4 0.4 2.2 8.2 0.0 2.4 2 0 0 2 2 2 0 Histidine kinase COX1 PF00115.15 gi|385775270|ref|YP_005647838.1| - 1.1e-24 86.8 49.1 1.1e-24 86.8 34.0 2.5 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Cupin_2 PF07883.6 gi|385775271|ref|YP_005647839.1| - 4.9e-15 54.7 0.0 6.7e-15 54.3 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|385775271|ref|YP_005647839.1| - 4.1e-07 29.7 0.0 5.5e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|385775271|ref|YP_005647839.1| - 2e-06 27.5 0.1 2.4e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|385775271|ref|YP_005647839.1| - 2.5e-06 26.9 0.0 3.6e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.7 gi|385775271|ref|YP_005647839.1| - 7.3e-05 22.6 0.2 9e-05 22.4 0.1 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.7 gi|385775271|ref|YP_005647839.1| - 0.00086 18.6 0.0 0.0014 17.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF4437 PF14499.1 gi|385775271|ref|YP_005647839.1| - 0.0061 15.4 0.0 0.0073 15.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4437) Cupin_6 PF12852.2 gi|385775271|ref|YP_005647839.1| - 0.0095 15.5 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 1 Cupin Asp_Arg_Hydrox PF05118.10 gi|385775271|ref|YP_005647839.1| - 0.022 14.6 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase EutQ PF06249.7 gi|385775271|ref|YP_005647839.1| - 0.085 12.4 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.3 gi|385775271|ref|YP_005647839.1| - 0.099 12.6 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Mif2/CENP-C like Lactamase_B PF00753.22 gi|385775274|ref|YP_005647842.1| - 3.9e-23 82.1 1.1 4.7e-23 81.8 0.7 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385775274|ref|YP_005647842.1| - 0.00051 19.6 0.1 0.00061 19.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM PF04055.16 gi|385775275|ref|YP_005647843.1| - 4.9e-20 72.3 0.9 6.2e-19 68.7 0.1 2.3 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385775275|ref|YP_005647843.1| - 5.5e-11 42.7 0.1 3.6e-10 40.0 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385775275|ref|YP_005647843.1| - 6.4e-08 32.6 0.0 2.4e-07 30.7 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|385775275|ref|YP_005647843.1| - 0.0059 16.9 1.3 0.016 15.5 0.9 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain LAGLIDADG_1 PF00961.14 gi|385775275|ref|YP_005647843.1| - 0.021 15.3 0.2 0.32 11.5 0.0 2.4 2 0 0 2 2 2 0 LAGLIDADG endonuclease YwpF PF14183.1 gi|385775275|ref|YP_005647843.1| - 0.042 13.5 1.3 0.3 10.7 0.2 2.5 3 0 0 3 3 3 0 YwpF-like protein AAA_14 PF13173.1 gi|385775276|ref|YP_005647844.1| - 4.7e-23 81.4 2.9 1.1e-22 80.3 0.1 2.5 3 0 0 3 3 3 1 AAA domain DUF4143 PF13635.1 gi|385775276|ref|YP_005647844.1| - 6.7e-06 26.1 0.1 1.6e-05 24.9 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|385775276|ref|YP_005647844.1| - 0.0003 20.5 9.8 0.0022 17.7 0.0 3.6 2 1 0 3 3 3 1 Archaeal ATPase AAA_16 PF13191.1 gi|385775276|ref|YP_005647844.1| - 0.00057 19.9 0.0 0.0032 17.4 0.0 2.1 3 0 0 3 3 3 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|385775276|ref|YP_005647844.1| - 0.0018 17.8 0.0 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family HTH_11 PF08279.7 gi|385775276|ref|YP_005647844.1| - 0.015 14.8 0.1 0.037 13.6 0.1 1.6 1 0 0 1 1 1 0 HTH domain NACHT PF05729.7 gi|385775276|ref|YP_005647844.1| - 0.016 14.9 0.0 0.063 12.9 0.0 2.0 1 1 0 1 1 1 0 NACHT domain FlaA PF04620.7 gi|385775276|ref|YP_005647844.1| - 0.017 14.5 0.1 0.055 12.8 0.0 1.8 2 0 0 2 2 2 0 Flagellar filament outer layer protein Flaa AAA_22 PF13401.1 gi|385775276|ref|YP_005647844.1| - 0.021 14.9 0.2 0.1 12.7 0.0 2.3 3 1 0 3 3 2 0 AAA domain AAA_2 PF07724.9 gi|385775276|ref|YP_005647844.1| - 0.026 14.4 0.0 0.067 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA PF00004.24 gi|385775276|ref|YP_005647844.1| - 0.027 14.6 0.0 0.068 13.3 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|385775276|ref|YP_005647844.1| - 0.047 13.4 0.0 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2361 PF10153.4 gi|385775277|ref|YP_005647845.1| - 0.11 12.7 0.5 0.19 11.9 0.3 1.5 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2361) GTPase_Cys_C PF12631.2 gi|385775277|ref|YP_005647845.1| - 0.13 12.6 0.0 0.15 12.5 0.0 1.1 1 0 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE AIM24 PF01987.12 gi|385775278|ref|YP_005647846.1| - 4.3e-57 193.0 0.9 4.9e-57 192.8 0.7 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Peptidase_S9 PF00326.16 gi|385775279|ref|YP_005647847.1| - 4.2e-42 143.7 0.0 6.7e-42 143.1 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|385775279|ref|YP_005647847.1| - 2e-12 47.5 0.0 2.7e-11 43.8 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|385775279|ref|YP_005647847.1| - 1.8e-11 43.9 0.0 2.7e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|385775279|ref|YP_005647847.1| - 2.8e-10 39.8 0.0 1.6e-09 37.3 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|385775279|ref|YP_005647847.1| - 1.7e-07 31.1 0.0 2e-05 24.4 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S15 PF02129.13 gi|385775279|ref|YP_005647847.1| - 3.9e-05 23.1 0.0 0.011 15.1 0.0 2.5 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_3 PF07859.8 gi|385775279|ref|YP_005647847.1| - 0.00057 19.5 0.0 0.0035 16.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|385775279|ref|YP_005647847.1| - 0.00061 19.4 0.1 0.04 13.4 0.1 2.5 1 1 1 2 2 2 1 alpha/beta hydrolase fold Esterase PF00756.15 gi|385775279|ref|YP_005647847.1| - 0.0014 18.1 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 Putative esterase DUF2048 PF09752.4 gi|385775279|ref|YP_005647847.1| - 0.002 17.0 0.0 0.0038 16.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2048) Abhydrolase_4 PF08386.5 gi|385775279|ref|YP_005647847.1| - 0.0038 17.0 0.0 0.0075 16.1 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein AXE1 PF05448.7 gi|385775279|ref|YP_005647847.1| - 0.0046 15.5 0.0 0.016 13.7 0.0 1.8 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) UPF0227 PF05728.7 gi|385775279|ref|YP_005647847.1| - 0.018 14.7 0.0 0.042 13.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Peptidase_S28 PF05577.7 gi|385775279|ref|YP_005647847.1| - 0.089 11.3 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Tannase PF07519.6 gi|385775279|ref|YP_005647847.1| - 0.13 10.9 0.0 0.28 9.8 0.0 1.5 1 0 0 1 1 1 0 Tannase and feruloyl esterase OrfB_IS605 PF01385.14 gi|385775280|ref|YP_005647848.1| - 1.1e-27 96.9 5.4 1.4e-27 96.5 3.7 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775280|ref|YP_005647848.1| - 1.2e-23 82.5 0.0 2.3e-23 81.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775280|ref|YP_005647848.1| - 0.026 13.8 0.1 4.5 6.6 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|385775280|ref|YP_005647848.1| - 0.052 13.2 0.4 4.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385775280|ref|YP_005647848.1| - 0.11 12.0 0.0 0.35 10.4 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain Cys_rich_CPCC PF14206.1 gi|385775280|ref|YP_005647848.1| - 0.16 11.5 0.2 0.28 10.7 0.1 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-ribbon_3 PF13248.1 gi|385775280|ref|YP_005647848.1| - 0.3 10.3 2.3 4.8 6.5 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Hydantoinase_B PF02538.9 gi|385775282|ref|YP_005647850.1| - 9.5e-98 327.6 0.0 1.2e-97 327.4 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|385775283|ref|YP_005647851.1| - 3.7e-90 301.9 0.2 4.4e-88 295.1 0.0 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|385775283|ref|YP_005647851.1| - 2.4e-54 183.4 0.4 8.3e-54 181.7 0.1 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|385775283|ref|YP_005647851.1| - 0.026 12.8 0.3 4.1 5.6 0.1 2.2 2 0 0 2 2 2 0 MutL protein BcrAD_BadFG PF01869.15 gi|385775283|ref|YP_005647851.1| - 0.033 13.4 0.0 5.9 6.0 0.0 2.4 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family HTH_AsnC-type PF13404.1 gi|385775284|ref|YP_005647852.1| - 3.8e-12 45.5 1.1 6.7e-12 44.7 0.8 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|385775284|ref|YP_005647852.1| - 1.8e-10 40.0 1.6 3.5e-10 39.0 1.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|385775284|ref|YP_005647852.1| - 0.003 17.0 0.1 0.0083 15.6 0.1 1.7 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.7 gi|385775284|ref|YP_005647852.1| - 0.0079 15.8 0.7 0.05 13.2 0.1 2.2 2 0 0 2 2 2 1 HTH domain AsnC_trans_reg PF01037.16 gi|385775284|ref|YP_005647852.1| - 0.023 14.3 0.2 0.038 13.6 0.1 1.4 1 0 0 1 1 1 0 AsnC family Transp_cyt_pur PF02133.10 gi|385775285|ref|YP_005647853.1| - 4.9e-18 64.9 46.9 9.2e-18 64.0 32.5 1.5 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Vma12 PF11712.3 gi|385775285|ref|YP_005647853.1| - 0.13 11.9 0.1 0.13 11.9 0.0 3.7 4 1 0 4 4 4 0 Endoplasmic reticulum-based factor for assembly of V-ATPase UbiA PF01040.13 gi|385775286|ref|YP_005647854.1| - 0.0028 16.9 7.1 0.0035 16.6 4.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3815 PF12821.2 gi|385775286|ref|YP_005647854.1| - 0.044 13.7 4.1 0.065 13.1 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3815) Tic20 PF09685.5 gi|385775286|ref|YP_005647854.1| - 0.36 10.8 14.9 0.74 9.8 3.0 2.1 2 0 0 2 2 2 0 Tic20-like protein DUF917 PF06032.7 gi|385775287|ref|YP_005647855.1| - 1.3e-122 408.8 0.3 1.4e-122 408.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) Hydantoinase_A PF01968.13 gi|385775288|ref|YP_005647856.1| - 1.3e-52 178.7 3.4 2.5e-51 174.4 0.8 2.8 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|385775288|ref|YP_005647856.1| - 6.6e-41 139.7 1.7 1e-38 132.6 0.2 2.9 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|385775288|ref|YP_005647856.1| - 1e-07 30.6 1.7 0.0017 16.7 0.2 2.7 3 0 0 3 3 3 2 MutL protein BcrAD_BadFG PF01869.15 gi|385775288|ref|YP_005647856.1| - 0.00041 19.7 0.4 0.00041 19.7 0.3 2.9 3 1 1 4 4 4 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|385775288|ref|YP_005647856.1| - 0.99 9.2 8.7 3 7.6 0.4 3.4 3 2 0 3 3 3 0 Cell division protein FtsA DUF917 PF06032.7 gi|385775289|ref|YP_005647857.1| - 5.4e-101 337.6 0.0 6.1e-101 337.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) HTH_10 PF04967.7 gi|385775290|ref|YP_005647858.1| - 5.4e-22 77.1 0.1 8.4e-22 76.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain DUF134 PF02001.11 gi|385775290|ref|YP_005647858.1| - 0.00014 21.7 0.0 0.00029 20.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_24 PF13412.1 gi|385775290|ref|YP_005647858.1| - 0.011 15.1 0.7 0.069 12.5 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MFS_1 PF07690.11 gi|385775291|ref|YP_005647859.1| - 1.6e-33 115.8 73.2 4.8e-28 97.8 29.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775291|ref|YP_005647859.1| - 6e-33 114.0 32.0 7.6e-33 113.7 22.2 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MR_MLE_C PF13378.1 gi|385775292|ref|YP_005647860.1| - 4.7e-17 61.9 0.0 9.9e-17 60.9 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|385775292|ref|YP_005647860.1| - 1.9e-15 57.0 0.0 8.6e-15 55.0 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|385775292|ref|YP_005647860.1| - 4.9e-05 23.2 0.0 8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ADH_N PF08240.7 gi|385775293|ref|YP_005647861.1| - 4e-29 100.5 0.5 6.8e-29 99.8 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385775293|ref|YP_005647861.1| - 4e-19 68.4 0.1 7.9e-19 67.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385775293|ref|YP_005647861.1| - 1.9e-11 44.9 0.1 3.8e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_31 PF13847.1 gi|385775294|ref|YP_005647862.1| - 0.067 12.7 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385775294|ref|YP_005647862.1| - 0.076 13.5 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain AAA_14 PF13173.1 gi|385775294|ref|YP_005647862.1| - 0.15 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain NurA PF09376.5 gi|385775296|ref|YP_005647864.1| - 1.5e-17 63.9 6.9 1.9e-17 63.5 4.8 1.1 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|385775297|ref|YP_005647865.1| - 3.6e-16 59.4 0.3 3.9e-09 36.3 0.0 2.4 3 0 0 3 3 2 2 AAA-like domain DUF87 PF01935.12 gi|385775297|ref|YP_005647865.1| - 2.2e-13 50.5 0.0 7.1e-13 48.9 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|385775297|ref|YP_005647865.1| - 1.3e-07 30.5 0.0 2.4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|385775297|ref|YP_005647865.1| - 2.6e-07 30.9 0.4 0.00099 19.3 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|385775297|ref|YP_005647865.1| - 1.1e-06 28.3 0.2 4.5e-06 26.2 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|385775297|ref|YP_005647865.1| - 1.7e-05 23.3 0.1 0.06 11.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_25 PF13481.1 gi|385775297|ref|YP_005647865.1| - 3e-05 23.4 0.1 0.11 11.8 0.0 2.5 3 0 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|385775297|ref|YP_005647865.1| - 3.1e-05 24.1 0.1 0.0035 17.5 0.0 2.9 2 1 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|385775297|ref|YP_005647865.1| - 4.1e-05 23.4 0.2 0.16 11.8 0.0 2.8 3 0 0 3 3 3 2 Type III restriction enzyme, res subunit ABC_tran PF00005.22 gi|385775297|ref|YP_005647865.1| - 8.1e-05 22.9 0.0 0.0002 21.6 0.0 1.7 1 0 0 1 1 1 1 ABC transporter Zot PF05707.7 gi|385775297|ref|YP_005647865.1| - 0.00021 20.8 0.8 0.00097 18.6 0.0 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|385775297|ref|YP_005647865.1| - 0.00071 18.5 0.1 0.0014 17.5 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|385775297|ref|YP_005647865.1| - 0.0024 17.3 0.0 1.2 8.5 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase cobW PF02492.14 gi|385775297|ref|YP_005647865.1| - 0.0027 17.1 0.1 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|385775297|ref|YP_005647865.1| - 0.0027 17.1 0.7 0.0081 15.6 0.1 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|385775297|ref|YP_005647865.1| - 0.0027 17.5 0.1 0.12 12.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|385775297|ref|YP_005647865.1| - 0.0036 17.0 0.6 0.022 14.4 0.0 2.3 2 1 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|385775297|ref|YP_005647865.1| - 0.0067 16.1 0.1 0.024 14.3 0.0 1.9 2 0 0 2 2 2 1 NACHT domain Viral_helicase1 PF01443.13 gi|385775297|ref|YP_005647865.1| - 0.015 14.8 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.1 gi|385775297|ref|YP_005647865.1| - 0.017 15.4 0.1 0.16 12.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|385775297|ref|YP_005647865.1| - 0.022 12.1 0.5 0.038 11.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_23 PF13476.1 gi|385775297|ref|YP_005647865.1| - 0.023 15.0 2.3 0.05 13.9 0.1 2.5 3 0 0 3 3 3 0 AAA domain G-alpha PF00503.15 gi|385775297|ref|YP_005647865.1| - 0.03 13.0 0.1 0.055 12.1 0.1 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.1 gi|385775297|ref|YP_005647865.1| - 0.034 13.7 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385775297|ref|YP_005647865.1| - 0.04 13.0 0.1 0.075 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TMF_DNA_bd PF12329.3 gi|385775297|ref|YP_005647865.1| - 0.051 13.3 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Miro PF08477.8 gi|385775297|ref|YP_005647865.1| - 0.054 13.9 0.1 0.18 12.2 0.0 2.0 2 0 0 2 2 1 0 Miro-like protein DUF2075 PF09848.4 gi|385775297|ref|YP_005647865.1| - 0.059 12.3 0.0 6.9 5.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|385775297|ref|YP_005647865.1| - 0.07 13.1 0.0 0.35 10.8 0.0 2.1 3 0 0 3 3 2 0 AAA ATPase domain RuvB_N PF05496.7 gi|385775297|ref|YP_005647865.1| - 0.079 11.9 0.2 0.31 10.0 0.0 2.0 3 0 0 3 3 2 0 Holliday junction DNA helicase ruvB N-terminus PduV-EutP PF10662.4 gi|385775297|ref|YP_005647865.1| - 0.11 11.9 0.1 0.53 9.7 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Peptidase_M20 PF01546.23 gi|385775299|ref|YP_005647867.1| - 1e-33 116.4 0.0 1.4e-33 116.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385775299|ref|YP_005647867.1| - 4.2e-19 68.3 0.0 1e-18 67.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain MFS_1 PF07690.11 gi|385775300|ref|YP_005647868.1| - 1.6e-23 83.0 74.5 7.1e-23 80.8 32.8 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775300|ref|YP_005647868.1| - 9.5e-13 47.5 43.4 4.5e-11 42.0 10.0 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter Peptidase_S58 PF03576.9 gi|385775301|ref|YP_005647869.1| - 3.3e-31 108.6 0.6 5e-31 108.1 0.4 1.2 1 0 0 1 1 1 1 Peptidase family S58 adh_short_C2 PF13561.1 gi|385775302|ref|YP_005647870.1| - 2.9e-37 128.7 0.1 3.4e-37 128.4 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|385775302|ref|YP_005647870.1| - 3.8e-23 82.2 0.1 9.1e-23 80.9 0.1 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385775302|ref|YP_005647870.1| - 1.9e-11 43.9 0.1 5.3e-11 42.5 0.0 1.7 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|385775302|ref|YP_005647870.1| - 0.00023 20.7 1.6 0.0043 16.5 1.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.5 gi|385775302|ref|YP_005647870.1| - 0.00041 19.5 0.0 0.0005 19.3 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) THF_DHG_CYH_C PF02882.14 gi|385775302|ref|YP_005647870.1| - 0.0013 17.8 0.1 0.0035 16.4 0.0 1.6 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|385775302|ref|YP_005647870.1| - 0.0054 15.8 0.1 0.01 14.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_4 PF07993.7 gi|385775302|ref|YP_005647870.1| - 0.015 14.2 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein AdoHcyase_NAD PF00670.16 gi|385775302|ref|YP_005647870.1| - 0.053 13.3 0.6 0.14 11.9 0.2 1.7 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lactamase_B PF00753.22 gi|385775304|ref|YP_005647872.1| - 2.3e-23 82.8 0.1 3e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385775304|ref|YP_005647872.1| - 3.1e-05 23.5 0.2 4.9e-05 22.9 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_10 PF04967.7 gi|385775305|ref|YP_005647873.1| - 3.8e-20 71.2 0.0 9.1e-20 69.9 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.1 gi|385775305|ref|YP_005647873.1| - 0.0086 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.1 gi|385775305|ref|YP_005647873.1| - 0.094 12.1 0.7 0.52 9.7 0.0 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HgmA PF04209.8 gi|385775306|ref|YP_005647874.1| - 1.4e-81 274.0 0.0 1.8e-81 273.7 0.0 1.0 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase Cupin_2 PF07883.6 gi|385775306|ref|YP_005647874.1| - 7.5e-05 22.1 0.1 0.0006 19.2 0.0 2.2 2 0 0 2 2 2 1 Cupin domain Cupin_3 PF05899.7 gi|385775306|ref|YP_005647874.1| - 0.0043 16.4 0.0 0.01 15.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) ARD PF03079.9 gi|385775306|ref|YP_005647874.1| - 0.12 12.3 0.1 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 ARD/ARD' family EutQ PF06249.7 gi|385775306|ref|YP_005647874.1| - 0.16 11.5 0.1 0.31 10.5 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Bac_luciferase PF00296.15 gi|385775307|ref|YP_005647875.1| - 1.1e-51 175.7 0.0 1.5e-51 175.3 0.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Cyclase PF04199.8 gi|385775308|ref|YP_005647876.1| - 4.6e-27 94.7 0.0 6.1e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase DUF1815 PF08844.5 gi|385775309|ref|YP_005647877.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1815) AAA_10 PF12846.2 gi|385775310|ref|YP_005647878.1| - 2.2e-17 63.4 0.5 9.9e-12 44.9 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|385775310|ref|YP_005647878.1| - 5.9e-13 49.1 1.7 3.2e-12 46.7 1.2 2.3 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|385775310|ref|YP_005647878.1| - 4.2e-09 35.3 0.0 0.00064 18.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|385775310|ref|YP_005647878.1| - 1e-08 34.8 0.2 0.00037 20.0 0.1 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|385775310|ref|YP_005647878.1| - 2.4e-06 27.7 0.6 0.031 14.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|385775310|ref|YP_005647878.1| - 3.8e-06 25.7 0.1 7e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.10 gi|385775310|ref|YP_005647878.1| - 0.00081 19.2 0.1 0.81 9.4 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit NACHT PF05729.7 gi|385775310|ref|YP_005647878.1| - 0.0022 17.6 0.1 0.79 9.3 0.0 2.3 2 0 0 2 2 2 1 NACHT domain Zot PF05707.7 gi|385775310|ref|YP_005647878.1| - 0.0031 17.0 0.0 0.014 14.8 0.0 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) ABC_tran PF00005.22 gi|385775310|ref|YP_005647878.1| - 0.0035 17.6 0.0 0.012 15.9 0.0 1.9 2 0 0 2 2 1 1 ABC transporter AAA_22 PF13401.1 gi|385775310|ref|YP_005647878.1| - 0.0058 16.7 0.0 0.57 10.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|385775310|ref|YP_005647878.1| - 0.0066 15.9 0.1 3.2 7.2 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Zeta_toxin PF06414.7 gi|385775310|ref|YP_005647878.1| - 0.011 14.9 0.0 0.025 13.6 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin DUF2075 PF09848.4 gi|385775310|ref|YP_005647878.1| - 0.016 14.1 0.3 0.79 8.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|385775310|ref|YP_005647878.1| - 0.021 14.5 0.2 0.34 10.5 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase AAA_21 PF13304.1 gi|385775310|ref|YP_005647878.1| - 0.027 14.4 2.0 0.03 14.2 0.2 1.8 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|385775310|ref|YP_005647878.1| - 0.03 14.6 0.1 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|385775310|ref|YP_005647878.1| - 0.036 13.5 0.1 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|385775310|ref|YP_005647878.1| - 0.037 12.9 0.0 0.072 11.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_N PF05496.7 gi|385775310|ref|YP_005647878.1| - 0.086 11.8 0.0 0.22 10.5 0.0 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Miro PF08477.8 gi|385775310|ref|YP_005647878.1| - 0.092 13.2 0.0 0.26 11.7 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|385775310|ref|YP_005647878.1| - 0.26 11.5 3.1 0.38 11.0 0.0 2.8 3 1 1 4 4 4 0 AAA domain NurA PF09376.5 gi|385775311|ref|YP_005647879.1| - 4.9e-10 39.3 2.0 6.6e-10 38.8 1.4 1.2 1 0 0 1 1 1 1 NurA domain DoxA PF07680.6 gi|385775312|ref|YP_005647880.1| - 0.077 12.6 0.0 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 TQO small subunit DoxA PIN PF01850.16 gi|385775313|ref|YP_005647881.1| - 3.5e-06 27.3 0.5 4.6e-06 26.9 0.4 1.1 1 0 0 1 1 1 1 PIN domain CcdA PF07362.7 gi|385775314|ref|YP_005647882.1| - 2e-07 30.7 5.5 3.2e-07 30.1 3.8 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|385775314|ref|YP_005647882.1| - 1.5e-05 24.6 1.3 1.5e-05 24.6 0.9 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3486 PF11985.3 gi|385775314|ref|YP_005647882.1| - 0.0018 18.3 8.1 0.0023 18.0 5.4 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3486) Staphopain_pro PF14731.1 gi|385775314|ref|YP_005647882.1| - 0.0097 15.6 0.2 0.018 14.8 0.0 1.4 1 1 1 2 2 2 1 Staphopain proregion Rotamase_3 PF13616.1 gi|385775314|ref|YP_005647882.1| - 0.049 13.8 0.8 0.053 13.7 0.5 1.1 1 0 0 1 1 1 0 PPIC-type PPIASE domain PHP PF02811.14 gi|385775314|ref|YP_005647882.1| - 0.062 13.0 0.2 0.062 13.0 0.1 1.0 1 0 0 1 1 1 0 PHP domain HTH_AsnC-type PF13404.1 gi|385775314|ref|YP_005647882.1| - 0.092 12.3 0.0 0.21 11.1 0.0 1.7 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Rho_N PF07498.7 gi|385775314|ref|YP_005647882.1| - 0.13 12.0 3.2 0.15 11.8 0.5 2.0 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain DUF2316 PF10078.4 gi|385775314|ref|YP_005647882.1| - 0.13 12.2 1.2 0.3 11.0 0.4 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) DUF1947 PF09183.5 gi|385775314|ref|YP_005647882.1| - 0.18 11.5 1.2 0.22 11.2 0.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1947) GvpK PF05121.7 gi|385775314|ref|YP_005647882.1| - 0.38 10.5 4.3 0.5 10.2 3.0 1.3 1 0 0 1 1 1 0 Gas vesicle protein K Histone_HNS PF00816.16 gi|385775314|ref|YP_005647882.1| - 0.4 11.2 7.3 5.9 7.4 3.4 2.0 1 1 1 2 2 2 0 H-NS histone family eIF3_N PF09440.5 gi|385775314|ref|YP_005647882.1| - 0.51 10.5 3.6 0.6 10.2 2.5 1.1 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain DUF749 PF05370.6 gi|385775314|ref|YP_005647882.1| - 0.59 10.1 4.1 1.1 9.2 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF749) CRF PF00473.12 gi|385775314|ref|YP_005647882.1| - 1.2 9.2 5.5 0.25 11.4 1.1 1.9 2 0 0 2 2 2 0 Corticotropin-releasing factor family Casc1 PF12366.3 gi|385775314|ref|YP_005647882.1| - 2.1 7.8 6.1 2.2 7.7 4.2 1.0 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 DUF1682 PF07946.9 gi|385775314|ref|YP_005647882.1| - 9.6 4.9 14.5 10 4.8 10.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) ABC2_membrane_2 PF12679.2 gi|385775316|ref|YP_005647884.1| - 1.8e-19 69.6 15.0 5.6e-19 68.0 10.4 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4480 PF13715.1 gi|385775316|ref|YP_005647884.1| - 1.5e-06 28.1 0.3 4.9e-06 26.5 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) ABC2_membrane_4 PF12730.2 gi|385775316|ref|YP_005647884.1| - 8.9e-06 25.0 63.1 0.00077 18.6 43.7 3.0 1 1 0 1 1 1 1 ABC-2 family transporter protein CarboxypepD_reg PF13620.1 gi|385775316|ref|YP_005647884.1| - 3.6e-05 23.7 0.0 8e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain ABC2_membrane_3 PF12698.2 gi|385775316|ref|YP_005647884.1| - 0.89 8.5 53.1 4.4 6.2 36.8 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|385775317|ref|YP_005647885.1| - 3.9e-24 85.4 0.0 1.4e-23 83.7 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385775317|ref|YP_005647885.1| - 2.9e-11 43.8 4.9 1.4e-10 41.6 0.7 2.5 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|385775317|ref|YP_005647885.1| - 0.0008 18.9 0.3 0.007 15.8 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|385775317|ref|YP_005647885.1| - 0.0032 17.8 2.7 0.0076 16.5 1.8 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775317|ref|YP_005647885.1| - 0.019 14.4 0.1 0.046 13.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|385775317|ref|YP_005647885.1| - 0.02 14.6 0.5 0.074 12.7 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|385775317|ref|YP_005647885.1| - 0.039 13.4 0.6 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|385775317|ref|YP_005647885.1| - 0.055 13.3 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|385775317|ref|YP_005647885.1| - 0.056 14.2 0.1 0.32 11.8 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385775317|ref|YP_005647885.1| - 0.53 10.4 2.4 25 5.0 1.7 2.5 1 1 0 1 1 1 0 AAA domain zinc_ribbon_5 PF13719.1 gi|385775318|ref|YP_005647886.1| - 5.6e-05 22.6 4.1 0.00022 20.7 2.9 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385775318|ref|YP_005647886.1| - 0.00014 21.4 4.4 0.00074 19.1 3.1 2.2 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|385775318|ref|YP_005647886.1| - 0.028 14.0 1.5 0.071 12.8 1.0 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family EF-hand_6 PF13405.1 gi|385775318|ref|YP_005647886.1| - 0.039 13.8 0.2 0.5 10.3 0.0 3.0 3 0 0 3 3 3 0 EF-hand domain DNA_RNApol_7kD PF03604.8 gi|385775318|ref|YP_005647886.1| - 0.32 10.4 2.9 1.3 8.5 2.0 2.1 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.7 gi|385775318|ref|YP_005647886.1| - 0.69 9.7 3.8 0.39 10.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbons UPF0547 PF10571.4 gi|385775318|ref|YP_005647886.1| - 1.8 8.3 3.9 6.3 6.5 2.7 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-LSD1 PF06943.7 gi|385775318|ref|YP_005647886.1| - 3.5 7.3 5.3 2.2 7.9 0.1 2.3 2 0 0 2 2 2 0 LSD1 zinc finger Lactamase_B_2 PF12706.2 gi|385775319|ref|YP_005647887.1| - 1.2e-08 34.7 0.0 2.2e-07 30.5 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385775319|ref|YP_005647887.1| - 4.6e-08 32.9 0.5 0.01 15.4 0.0 2.8 3 1 0 3 3 3 2 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|385775319|ref|YP_005647887.1| - 0.00041 20.1 0.0 0.00079 19.1 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase DUF3238 PF11579.3 gi|385775319|ref|YP_005647887.1| - 0.081 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3238) SNF2_N PF00176.18 gi|385775320|ref|YP_005647888.1| - 1.6e-22 79.6 2.8 3.2e-22 78.6 0.2 2.5 2 1 1 3 3 3 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|385775320|ref|YP_005647888.1| - 6.9e-13 48.2 0.0 1.5e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385775320|ref|YP_005647888.1| - 3.2e-10 39.7 1.4 1.4e-09 37.6 0.0 2.6 3 2 1 4 4 4 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|385775320|ref|YP_005647888.1| - 8.3e-10 38.7 0.1 3.7e-09 36.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit EFG_C PF00679.19 gi|385775320|ref|YP_005647888.1| - 0.023 14.5 0.0 0.17 11.7 0.0 2.6 1 1 0 1 1 1 0 Elongation factor G C-terminus Helicase_C_4 PF13871.1 gi|385775320|ref|YP_005647888.1| - 0.031 13.6 0.0 0.071 12.5 0.0 1.6 1 1 0 1 1 1 0 Helicase_C-like ENT PF03735.9 gi|385775320|ref|YP_005647888.1| - 1 9.1 4.2 0.53 10.0 0.2 2.5 3 0 0 3 3 3 0 ENT domain STN PF07660.9 gi|385775321|ref|YP_005647889.1| - 0.023 14.2 0.1 0.06 12.9 0.1 1.8 1 1 0 1 1 1 0 Secretin and TonB N terminus short domain DUF2124 PF09897.4 gi|385775321|ref|YP_005647889.1| - 0.092 12.4 0.1 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) DUF499 PF04465.7 gi|385775322|ref|YP_005647890.1| - 6.3e-113 378.3 38.9 8.6e-113 377.8 26.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF499) DEAD_assoc PF08494.6 gi|385775322|ref|YP_005647890.1| - 0.088 12.5 0.6 9.6 5.8 0.0 3.2 3 0 0 3 3 3 0 DEAD/H associated DUF1156 PF06634.7 gi|385775323|ref|YP_005647891.1| - 1.4e-11 43.9 0.1 4.6e-11 42.3 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|385775323|ref|YP_005647891.1| - 4.6e-08 33.1 0.0 0.00018 21.5 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|385775323|ref|YP_005647891.1| - 2.7e-07 30.3 0.0 0.00036 20.1 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|385775323|ref|YP_005647891.1| - 5.3e-07 29.3 0.8 0.00037 20.0 0.0 2.9 3 0 0 3 3 3 2 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|385775323|ref|YP_005647891.1| - 2.3e-05 23.8 0.0 0.14 11.5 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 MTS PF05175.9 gi|385775323|ref|YP_005647891.1| - 0.16 11.3 0.0 0.44 9.9 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain PaREP1 PF05942.6 gi|385775325|ref|YP_005647893.1| - 2.3e-33 114.4 6.6 2.3e-33 114.4 4.6 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|385775325|ref|YP_005647893.1| - 0.00035 20.2 0.2 0.0011 18.5 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF357) DUF4398 PF14346.1 gi|385775325|ref|YP_005647893.1| - 3.4 7.7 8.9 0.43 10.6 2.9 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4398) Cas_Cmr3 PF09700.5 gi|385775326|ref|YP_005647894.1| - 1.8e-51 175.6 0.0 1.5e-50 172.6 0.0 1.9 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr3) Orbi_NS1 PF01718.11 gi|385775326|ref|YP_005647894.1| - 0.09 10.7 0.1 0.13 10.2 0.1 1.1 1 0 0 1 1 1 0 Orbivirus non-structural protein NS1, or hydrophobic tubular protein DUF3692 PF12469.3 gi|385775327|ref|YP_005647895.1| - 4.7e-31 107.4 0.0 3.8e-30 104.4 0.0 2.6 2 0 0 2 2 2 1 CRISPR-associated protein RAMPs PF03787.10 gi|385775328|ref|YP_005647896.1| - 9e-11 42.0 0.1 9e-11 42.0 0.1 2.3 1 1 1 2 2 2 1 RAMP superfamily ShlB PF03865.8 gi|385775328|ref|YP_005647896.1| - 0.048 12.4 0.2 0.064 11.9 0.1 1.1 1 0 0 1 1 1 0 Haemolysin secretion/activation protein ShlB/FhaC/HecB RAMPs PF03787.10 gi|385775329|ref|YP_005647897.1| - 5.8e-13 49.1 4.5 5.8e-13 49.1 3.1 2.3 2 1 0 2 2 2 1 RAMP superfamily RAMPs PF03787.10 gi|385775331|ref|YP_005647899.1| - 6.8e-28 97.9 0.1 1.1e-27 97.2 0.0 1.3 1 1 0 1 1 1 1 RAMP superfamily E2_bind PF08825.5 gi|385775331|ref|YP_005647899.1| - 0.093 12.4 0.2 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 E2 binding domain Transposase_20 PF02371.11 gi|385775333|ref|YP_005647901.1| - 4.1e-24 84.5 0.0 7.8e-24 83.5 0.0 1.5 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|385775333|ref|YP_005647901.1| - 4e-11 42.7 0.0 1e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 Transposase Antitoxin-MazE PF04014.13 gi|385775334|ref|YP_005647902.1| - 2.5e-15 55.7 0.2 3.5e-15 55.3 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE CDC48_N PF02359.13 gi|385775334|ref|YP_005647902.1| - 0.0012 18.7 0.1 0.0049 16.7 0.1 1.8 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain DUF1905 PF08922.6 gi|385775334|ref|YP_005647902.1| - 0.0016 17.9 0.1 0.036 13.6 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1905) eIF-1a PF01176.14 gi|385775334|ref|YP_005647902.1| - 0.081 12.3 0.1 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF104 PF01954.11 gi|385775334|ref|YP_005647902.1| - 0.11 12.5 0.9 0.2 11.7 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF104 DUF3647 PF12363.3 gi|385775334|ref|YP_005647902.1| - 0.12 12.4 0.4 0.2 11.7 0.2 1.7 1 1 0 1 1 1 0 Phage protein PIN PF01850.16 gi|385775335|ref|YP_005647903.1| - 9.9e-18 64.6 1.7 1.1e-17 64.4 1.2 1.0 1 0 0 1 1 1 1 PIN domain UPF0278 PF08745.6 gi|385775335|ref|YP_005647903.1| - 0.0011 18.2 0.2 0.0025 17.0 0.0 1.6 2 1 0 2 2 2 1 UPF0278 family DUF4173 PF13777.1 gi|385775336|ref|YP_005647904.1| - 0.016 14.4 5.3 0.02 14.1 3.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) FliP PF00813.15 gi|385775336|ref|YP_005647904.1| - 6.4 6.4 9.2 2.8 7.6 4.1 1.9 1 1 1 2 2 2 0 FliP family DUF2085 PF09858.4 gi|385775336|ref|YP_005647904.1| - 6.9 6.8 7.5 1.5 8.9 1.5 2.1 1 1 0 2 2 2 0 Predicted membrane protein (DUF2085) XdhC_C PF13478.1 gi|385775337|ref|YP_005647905.1| - 9.4e-22 77.7 0.0 1.2e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 XdhC Rossmann domain OmpA PF00691.15 gi|385775337|ref|YP_005647905.1| - 0.13 12.6 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 OmpA family AA_permease PF00324.16 gi|385775338|ref|YP_005647906.1| - 5.6e-10 38.1 48.1 3.2e-09 35.6 33.3 2.0 1 1 0 1 1 1 1 Amino acid permease DUF788 PF05620.6 gi|385775338|ref|YP_005647906.1| - 0.085 12.7 0.3 0.085 12.7 0.2 3.0 4 1 0 4 4 4 0 Protein of unknown function (DUF788) Glycos_transf_2 PF00535.21 gi|385775339|ref|YP_005647907.1| - 9.8e-09 35.1 0.1 1.9e-08 34.1 0.1 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF1890 PF09001.6 gi|385775339|ref|YP_005647907.1| - 0.076 13.0 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) PaREP1 PF05942.6 gi|385775340|ref|YP_005647908.1| - 4.3e-35 120.0 5.5 5.5e-35 119.7 3.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|385775340|ref|YP_005647908.1| - 0.00043 19.9 2.2 0.00096 18.7 0.4 2.4 2 1 1 3 3 3 1 Protein of unknown function (DUF357) Phasin_2 PF09361.5 gi|385775340|ref|YP_005647908.1| - 0.004 17.1 1.2 0.0083 16.1 0.5 1.8 2 1 0 2 2 2 1 Phasin protein HEPN PF05168.9 gi|385775340|ref|YP_005647908.1| - 0.073 12.9 4.0 0.21 11.4 1.3 2.5 3 0 0 3 3 3 0 HEPN domain PqqD PF05402.7 gi|385775340|ref|YP_005647908.1| - 0.19 11.7 2.7 0.24 11.4 0.1 2.5 4 0 0 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) PhoU PF01895.14 gi|385775340|ref|YP_005647908.1| - 1.7 9.1 5.3 19 5.8 1.0 3.0 2 1 1 3 3 3 0 PhoU domain Polysacc_synt_C PF14667.1 gi|385775341|ref|YP_005647909.1| - 0.096 12.4 0.8 0.1 12.4 0.6 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain OrfB_IS605 PF01385.14 gi|385775342|ref|YP_005647910.1| - 7.5e-27 94.1 7.1 9.7e-27 93.8 4.9 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775342|ref|YP_005647910.1| - 4.6e-24 83.8 0.1 9.4e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775342|ref|YP_005647910.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|385775342|ref|YP_005647910.1| - 0.084 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385775342|ref|YP_005647910.1| - 0.11 11.9 0.2 0.44 10.1 0.1 1.9 1 1 0 1 1 1 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385775342|ref|YP_005647910.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385775342|ref|YP_005647910.1| - 0.29 10.9 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385775342|ref|YP_005647910.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385775342|ref|YP_005647910.1| - 4.6 7.1 5.1 4.6 7.1 0.3 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Exonuc_VII_S PF02609.11 gi|385775343|ref|YP_005647911.1| - 0.098 12.4 2.1 0.1 12.4 0.1 1.9 2 1 0 2 2 2 0 Exonuclease VII small subunit DNA_pol_B PF00136.16 gi|385775344|ref|YP_005647912.1| - 1.2e-14 53.9 2.5 2.5e-13 49.6 1.7 2.5 1 1 0 1 1 1 1 DNA polymerase family B RsmJ PF04378.8 gi|385775345|ref|YP_005647913.1| - 0.1 11.5 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA small subunit methyltransferase D, RsmJ ResIII PF04851.10 gi|385775347|ref|YP_005647915.1| - 2.1e-21 76.5 0.0 6.7e-21 74.9 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385775347|ref|YP_005647915.1| - 7e-16 57.8 0.0 2.1e-15 56.3 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385775347|ref|YP_005647915.1| - 4.1e-13 49.1 0.0 7.5e-12 45.0 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase T2SE PF00437.15 gi|385775347|ref|YP_005647915.1| - 5.7e-05 22.1 0.0 0.00022 20.2 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein MerR PF00376.18 gi|385775347|ref|YP_005647915.1| - 0.0077 15.7 0.2 0.033 13.7 0.0 2.1 2 0 0 2 2 2 1 MerR family regulatory protein DUF2075 PF09848.4 gi|385775347|ref|YP_005647915.1| - 0.024 13.6 0.0 0.093 11.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|385775347|ref|YP_005647915.1| - 0.036 13.2 0.0 0.088 12.0 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein Helicase_C_2 PF13307.1 gi|385775347|ref|YP_005647915.1| - 0.067 13.1 0.1 0.5 10.3 0.0 2.4 1 1 1 2 2 2 0 Helicase C-terminal domain EamA PF00892.15 gi|385775348|ref|YP_005647916.1| - 2.5e-20 72.8 44.5 2.8e-11 43.5 14.0 2.4 2 1 0 2 2 2 2 EamA-like transporter family UPF0060 PF02694.10 gi|385775348|ref|YP_005647916.1| - 0.0054 16.7 3.6 0.0054 16.7 2.5 2.3 2 0 0 2 2 2 1 Uncharacterised BCR, YnfA/UPF0060 family Arch_ATPase PF01637.13 gi|385775349|ref|YP_005647917.1| - 0.0067 16.1 0.2 0.0067 16.1 0.1 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|385775349|ref|YP_005647917.1| - 0.012 15.4 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|385775349|ref|YP_005647917.1| - 0.094 12.2 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF2249 PF10006.4 gi|385775350|ref|YP_005647918.1| - 8.3e-17 60.5 0.2 6.2e-16 57.7 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) Cupin_2 PF07883.6 gi|385775350|ref|YP_005647918.1| - 7.7e-12 44.5 0.3 2.1e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 Cupin domain Cupin_1 PF00190.17 gi|385775350|ref|YP_005647918.1| - 1.8e-06 27.4 0.0 2.7e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|385775350|ref|YP_005647918.1| - 1.3e-05 24.5 0.0 3.1e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.14 gi|385775350|ref|YP_005647918.1| - 1.5e-05 24.6 0.0 2.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|385775350|ref|YP_005647918.1| - 1.6e-05 24.7 0.1 2.7e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Mif2/CENP-C like Auxin_BP PF02041.11 gi|385775350|ref|YP_005647918.1| - 0.0037 16.7 0.0 0.0075 15.7 0.0 1.5 1 0 0 1 1 1 1 Auxin binding protein MannoseP_isomer PF01050.13 gi|385775350|ref|YP_005647918.1| - 0.014 14.9 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase cNMP_binding PF00027.24 gi|385775350|ref|YP_005647918.1| - 0.042 13.6 0.3 6.3 6.6 0.0 2.4 2 0 0 2 2 2 0 Cyclic nucleotide-binding domain Pirin_C PF05726.8 gi|385775350|ref|YP_005647918.1| - 0.071 13.1 0.0 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 Pirin C-terminal cupin domain DUF2249 PF10006.4 gi|385775351|ref|YP_005647919.1| - 0.0054 16.2 0.0 0.0061 16.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) SH3_1 PF00018.23 gi|385775351|ref|YP_005647919.1| - 0.018 14.3 0.4 3.6 7.0 0.0 2.1 2 0 0 2 2 2 0 SH3 domain Phage_holin_5 PF06946.6 gi|385775352|ref|YP_005647920.1| - 1.6 8.9 5.6 2.1 8.5 3.9 1.2 1 0 0 1 1 1 0 Phage holin Copper-bind PF00127.15 gi|385775353|ref|YP_005647921.1| - 5.2e-07 29.8 0.0 1.5e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.6 gi|385775353|ref|YP_005647921.1| - 0.019 14.2 0.7 0.019 14.2 0.5 2.6 2 2 0 2 2 2 0 Sulfocyanin (SoxE) Cu-oxidase_2 PF07731.9 gi|385775353|ref|YP_005647921.1| - 0.071 12.6 0.0 0.45 10.0 0.0 2.0 2 0 0 2 2 2 0 Multicopper oxidase GRP PF07172.6 gi|385775353|ref|YP_005647921.1| - 0.072 13.5 16.3 0.21 12.0 11.4 1.6 1 1 0 1 1 1 0 Glycine rich protein family Hemerythrin PF01814.18 gi|385775354|ref|YP_005647922.1| - 0.06 13.5 0.0 0.06 13.5 0.0 1.2 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain Hemerythrin PF01814.18 gi|385775355|ref|YP_005647923.1| - 0.00016 21.8 0.0 0.00018 21.6 0.0 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain PrgU PF09627.5 gi|385775355|ref|YP_005647923.1| - 0.059 12.9 0.3 0.065 12.8 0.2 1.1 1 0 0 1 1 1 0 PrgU-like protein Gag_p15 PF08723.5 gi|385775356|ref|YP_005647924.1| - 0.1 12.5 0.1 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Gag protein p15 HTH_10 PF04967.7 gi|385775357|ref|YP_005647925.1| - 2.4e-24 84.6 0.1 3.9e-24 83.9 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|385775357|ref|YP_005647925.1| - 4.5e-08 32.2 0.1 8e-08 31.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|385775357|ref|YP_005647925.1| - 0.00026 20.3 0.1 0.00056 19.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385775357|ref|YP_005647925.1| - 0.0039 17.4 0.0 0.0069 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|385775357|ref|YP_005647925.1| - 0.007 15.5 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|385775357|ref|YP_005647925.1| - 0.0087 15.6 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_26 PF13443.1 gi|385775357|ref|YP_005647925.1| - 0.0089 16.2 0.2 0.034 14.3 0.0 2.0 2 1 1 3 3 1 1 Cro/C1-type HTH DNA-binding domain GerE PF00196.14 gi|385775357|ref|YP_005647925.1| - 0.021 14.1 0.1 4.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r3 PF04539.11 gi|385775357|ref|YP_005647925.1| - 0.022 14.6 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_AsnC-type PF13404.1 gi|385775357|ref|YP_005647925.1| - 0.027 14.0 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|385775357|ref|YP_005647925.1| - 0.054 13.0 0.0 0.093 12.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_37 PF13744.1 gi|385775357|ref|YP_005647925.1| - 0.057 13.2 0.0 0.13 12.0 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|385775357|ref|YP_005647925.1| - 0.057 13.1 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Mga PF08280.6 gi|385775357|ref|YP_005647925.1| - 0.059 13.1 0.2 0.33 10.7 0.0 2.4 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain ENT PF03735.9 gi|385775357|ref|YP_005647925.1| - 0.063 12.9 0.1 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 ENT domain Mga PF05043.8 gi|385775357|ref|YP_005647925.1| - 0.071 13.3 0.1 0.58 10.4 0.1 2.3 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_11 PF08279.7 gi|385775357|ref|YP_005647925.1| - 0.071 12.7 0.0 0.23 11.1 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.1 gi|385775357|ref|YP_005647925.1| - 0.084 12.9 0.0 0.22 11.5 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.5 gi|385775357|ref|YP_005647925.1| - 0.097 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Crp_2 PF13545.1 gi|385775357|ref|YP_005647925.1| - 0.11 12.3 0.1 0.95 9.3 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF1647 PF07801.6 gi|385775357|ref|YP_005647925.1| - 0.18 11.3 1.8 0.36 10.3 1.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1647) UPF0122 PF04297.9 gi|385775357|ref|YP_005647925.1| - 0.25 11.4 2.3 0.18 11.8 0.3 1.7 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF488 PF04343.8 gi|385775358|ref|YP_005647926.1| - 1.8e-26 92.8 0.0 2.1e-26 92.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 zf-C2H2 PF00096.21 gi|385775359|ref|YP_005647927.1| - 5.9e-07 29.4 4.5 0.00077 19.6 0.3 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|385775359|ref|YP_005647927.1| - 0.00015 21.5 3.6 0.0021 17.8 0.1 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger zf-Di19 PF05605.7 gi|385775359|ref|YP_005647927.1| - 0.00036 20.6 3.1 0.0011 19.0 2.1 1.7 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|385775359|ref|YP_005647927.1| - 0.00054 20.1 3.6 0.11 12.8 0.2 2.4 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|385775359|ref|YP_005647927.1| - 0.0036 16.9 1.9 0.021 14.4 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.1 gi|385775359|ref|YP_005647927.1| - 0.0066 16.6 6.1 1.5 9.2 1.1 2.9 3 0 0 3 3 3 2 Zinc-finger double domain Rubredoxin PF00301.15 gi|385775359|ref|YP_005647927.1| - 0.007 16.2 0.3 0.0097 15.7 0.2 1.2 1 0 0 1 1 1 1 Rubredoxin C1_2 PF03107.11 gi|385775359|ref|YP_005647927.1| - 0.019 15.0 2.2 0.29 11.2 0.2 2.1 2 0 0 2 2 2 0 C1 domain zf-met PF12874.2 gi|385775359|ref|YP_005647927.1| - 0.023 14.8 5.8 0.036 14.2 0.3 2.4 2 1 0 2 2 2 0 Zinc-finger of C2H2 type zinc_ribbon_5 PF13719.1 gi|385775359|ref|YP_005647927.1| - 0.028 14.0 0.8 0.96 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|385775359|ref|YP_005647927.1| - 0.032 13.9 0.2 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.1 gi|385775359|ref|YP_005647927.1| - 0.033 13.9 0.8 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|385775359|ref|YP_005647927.1| - 0.034 13.5 0.4 0.037 13.3 0.3 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-C2H2_2 PF12756.2 gi|385775359|ref|YP_005647927.1| - 0.036 14.1 3.4 1.1 9.4 0.3 2.1 1 1 1 2 2 2 0 C2H2 type zinc-finger (2 copies) Prok-RING_1 PF14446.1 gi|385775359|ref|YP_005647927.1| - 0.037 13.7 1.0 2.3 8.0 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|385775359|ref|YP_005647927.1| - 0.044 13.4 0.2 0.06 13.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_jaz PF12171.3 gi|385775359|ref|YP_005647927.1| - 0.065 13.3 2.7 0.38 10.9 0.2 2.6 3 0 0 3 3 2 0 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.5 gi|385775359|ref|YP_005647927.1| - 0.071 13.0 4.6 0.95 9.4 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Elf1 PF05129.8 gi|385775359|ref|YP_005647927.1| - 0.077 12.6 2.0 2.2 8.0 0.1 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-dskA_traR PF01258.12 gi|385775359|ref|YP_005647927.1| - 0.12 12.1 4.2 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger RRN7 PF11781.3 gi|385775359|ref|YP_005647927.1| - 0.15 11.5 1.3 5.2 6.6 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 XPA_N PF01286.13 gi|385775359|ref|YP_005647927.1| - 0.16 11.6 1.1 11 5.8 0.1 2.2 2 0 0 2 2 2 0 XPA protein N-terminal Endonuclease_7 PF02945.10 gi|385775359|ref|YP_005647927.1| - 0.16 11.6 2.4 0.2 11.3 0.2 1.8 1 1 1 2 2 2 0 Recombination endonuclease VII zf-met2 PF12907.2 gi|385775359|ref|YP_005647927.1| - 0.24 11.4 1.2 2.2 8.3 0.0 2.6 3 0 0 3 3 3 0 Zinc-binding C1_3 PF07649.7 gi|385775359|ref|YP_005647927.1| - 0.32 11.0 4.4 0.76 9.8 0.2 2.1 2 0 0 2 2 2 0 C1-like domain Cytochrome_C7 PF14522.1 gi|385775359|ref|YP_005647927.1| - 0.39 10.3 2.4 0.67 9.6 1.7 1.5 1 1 0 1 1 1 0 Cytochrome c7 DUF2225 PF09986.4 gi|385775359|ref|YP_005647927.1| - 0.45 9.9 2.2 7.2 6.0 0.2 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Rad50_zn_hook PF04423.9 gi|385775359|ref|YP_005647927.1| - 0.6 9.6 3.4 3.1 7.3 0.7 2.4 2 1 0 2 2 2 0 Rad50 zinc hook motif zf-RING_5 PF14634.1 gi|385775359|ref|YP_005647927.1| - 0.81 9.4 3.5 10 5.9 0.2 2.2 1 1 2 3 3 3 0 zinc-RING finger domain Desulfoferrod_N PF06397.7 gi|385775359|ref|YP_005647927.1| - 0.89 9.0 3.5 0.95 8.9 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-trcl PF13451.1 gi|385775359|ref|YP_005647927.1| - 7.2 6.3 7.2 50 3.6 4.2 2.4 2 1 0 2 2 1 0 Probable zinc-binding domain DUF59 PF01883.14 gi|385775360|ref|YP_005647928.1| - 4.2e-15 55.4 0.1 4.9e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF59 Antimicrobial19 PF08225.6 gi|385775360|ref|YP_005647928.1| - 0.011 15.1 0.3 0.021 14.1 0.2 1.4 1 0 0 1 1 1 0 Pseudin antimicrobial peptide YqhG PF11079.3 gi|385775360|ref|YP_005647928.1| - 0.046 12.5 0.1 0.068 11.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function OrfB_IS605 PF01385.14 gi|385775361|ref|YP_005647929.1| - 2.1e-37 128.7 6.7 3.8e-37 127.8 4.7 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775361|ref|YP_005647929.1| - 5.9e-28 96.3 0.2 1.5e-27 95.0 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385775361|ref|YP_005647929.1| - 1.1e-08 34.2 1.4 1.4e-08 33.9 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|385775361|ref|YP_005647929.1| - 0.02 14.2 1.5 5.2 6.4 0.0 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding DUF3543 PF12063.3 gi|385775361|ref|YP_005647929.1| - 0.027 13.6 4.0 0.34 10.0 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3543) UPF0547 PF10571.4 gi|385775361|ref|YP_005647929.1| - 0.038 13.6 0.8 10 5.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|385775361|ref|YP_005647929.1| - 0.077 12.8 0.2 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|385775361|ref|YP_005647929.1| - 0.15 11.2 3.0 5.9 6.2 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385775361|ref|YP_005647929.1| - 0.19 11.2 1.0 14 5.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Pox_VLTF3 PF04947.9 gi|385775361|ref|YP_005647929.1| - 0.32 10.4 12.7 0.2 11.1 5.1 2.6 2 1 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like DUF1610 PF07754.6 gi|385775361|ref|YP_005647929.1| - 0.77 9.9 4.2 0.24 11.5 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Y1_Tnp PF01797.11 gi|385775362|ref|YP_005647930.1| - 1.6e-38 131.2 2.0 1.8e-38 131.0 1.4 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF1638 PF07796.6 gi|385775362|ref|YP_005647930.1| - 0.08 12.5 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) FBP PF07299.6 gi|385775362|ref|YP_005647930.1| - 0.1 11.8 0.5 0.15 11.3 0.3 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) DAO PF01266.19 gi|385775362|ref|YP_005647930.1| - 0.12 11.2 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase Usp PF00582.21 gi|385775363|ref|YP_005647931.1| - 4.3e-35 120.9 0.7 5e-35 120.7 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family Peptidase_M19 PF01244.16 gi|385775364|ref|YP_005647932.1| - 3.8e-71 239.6 0.0 4.3e-71 239.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) MFS_1 PF07690.11 gi|385775365|ref|YP_005647933.1| - 3.8e-27 94.9 62.5 2.1e-23 82.6 28.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|385775365|ref|YP_005647933.1| - 0.19 9.8 15.6 0.027 12.5 5.6 2.0 2 0 0 2 2 2 0 Transmembrane secretion effector KaiC PF06745.8 gi|385775366|ref|YP_005647934.1| - 7.3e-88 293.5 0.1 1.1e-87 292.8 0.1 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|385775366|ref|YP_005647934.1| - 2.3e-10 40.1 0.0 4.1e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|385775366|ref|YP_005647934.1| - 0.00018 20.6 5.0 0.0015 17.5 0.3 2.4 2 1 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|385775366|ref|YP_005647934.1| - 0.0025 17.5 0.1 0.0048 16.6 0.0 1.4 2 0 0 2 2 2 1 Archaeal ATPase GvpD PF07088.6 gi|385775366|ref|YP_005647934.1| - 0.0062 14.9 0.0 0.0092 14.3 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein DUF1833 PF08875.6 gi|385775366|ref|YP_005647934.1| - 0.0081 15.3 0.2 0.091 11.9 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1833) AAA_14 PF13173.1 gi|385775366|ref|YP_005647934.1| - 0.0084 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385775366|ref|YP_005647934.1| - 0.013 15.6 0.6 0.074 13.1 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385775366|ref|YP_005647934.1| - 0.016 14.9 0.3 0.049 13.4 0.2 1.7 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|385775366|ref|YP_005647934.1| - 0.039 12.8 0.0 0.075 11.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Drf_FH3 PF06367.11 gi|385775366|ref|YP_005647934.1| - 0.065 12.6 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Diaphanous FH3 Domain PAXNEB PF05625.6 gi|385775366|ref|YP_005647934.1| - 0.1 11.4 0.4 2 7.1 0.0 2.3 3 0 0 3 3 3 0 PAXNEB protein AAA_18 PF13238.1 gi|385775366|ref|YP_005647934.1| - 0.13 12.5 2.4 0.24 11.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|385775366|ref|YP_005647934.1| - 0.18 11.7 0.2 0.72 9.8 0.2 1.7 1 1 0 2 2 2 0 AAA ATPase domain BacA PF02673.13 gi|385775367|ref|YP_005647935.1| - 3.1e-52 177.3 24.1 3.7e-52 177.0 16.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF3185 PF11381.3 gi|385775367|ref|YP_005647935.1| - 0.72 9.6 0.1 0.72 9.6 0.1 4.3 5 0 0 5 5 5 0 Protein of unknown function (DUF3185) DUF1146 PF06612.6 gi|385775367|ref|YP_005647935.1| - 1.4 8.8 10.1 0.47 10.4 2.7 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1146) DUF4396 PF14342.1 gi|385775367|ref|YP_005647935.1| - 2.5 8.2 10.0 0.35 10.9 0.7 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4396) Peptidase_M48 PF01435.13 gi|385775368|ref|YP_005647936.1| - 3.9e-31 108.3 0.0 7.7e-31 107.4 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|385775368|ref|YP_005647936.1| - 0.015 14.3 0.7 0.23 10.3 0.0 2.2 2 0 0 2 2 2 0 BlaR1 peptidase M56 GATase PF00117.23 gi|385775369|ref|YP_005647937.1| - 1.5e-19 70.2 0.0 1.8e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385775369|ref|YP_005647937.1| - 2.9e-06 26.8 0.1 6.5e-06 25.7 0.0 1.7 3 0 0 3 3 3 1 Peptidase C26 SNO PF01174.14 gi|385775369|ref|YP_005647937.1| - 0.022 14.3 0.1 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|385775369|ref|YP_005647937.1| - 0.051 13.1 0.1 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.11 gi|385775369|ref|YP_005647937.1| - 0.056 12.1 0.0 0.08 11.6 0.0 1.3 1 0 0 1 1 1 0 Homoserine O-succinyltransferase PPK2 PF03976.9 gi|385775369|ref|YP_005647937.1| - 0.061 12.5 0.2 0.12 11.6 0.1 1.5 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) DoxA PF07680.6 gi|385775370|ref|YP_005647938.1| - 1.5e-50 170.2 0.1 1.8e-50 169.9 0.1 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA DoxD PF04173.8 gi|385775371|ref|YP_005647939.1| - 1e-67 227.0 4.2 1.1e-67 226.8 2.9 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.7 gi|385775371|ref|YP_005647939.1| - 0.00055 20.3 10.0 0.00055 20.3 6.9 2.1 2 1 0 2 2 2 1 DoxX Amidohydro_1 PF01979.15 gi|385775372|ref|YP_005647940.1| - 8.4e-40 137.4 0.0 9.9e-40 137.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385775372|ref|YP_005647940.1| - 1.3e-09 38.5 0.0 2.5e-05 24.4 0.0 2.3 1 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|385775372|ref|YP_005647940.1| - 1.3e-08 34.4 0.0 2.8e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385775372|ref|YP_005647940.1| - 0.0004 19.7 0.0 0.23 10.6 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase family FtsX PF02687.16 gi|385775373|ref|YP_005647941.1| - 8.8e-05 22.2 1.2 8.8e-05 22.2 0.8 2.7 1 1 1 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|385775373|ref|YP_005647941.1| - 0.00067 19.3 0.1 0.00067 19.3 0.1 2.0 1 1 0 2 2 2 1 MacB-like periplasmic core domain SieB PF14163.1 gi|385775373|ref|YP_005647941.1| - 0.049 13.2 1.8 0.76 9.3 0.0 2.2 2 0 0 2 2 2 0 Superinfection exclusion protein B MacB_PCD PF12704.2 gi|385775374|ref|YP_005647942.1| - 2.1e-09 37.2 0.6 2.6e-09 37.0 0.4 1.0 1 0 0 1 1 1 1 MacB-like periplasmic core domain DUF2127 PF09900.4 gi|385775374|ref|YP_005647942.1| - 0.017 15.1 0.0 0.023 14.7 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2127) Peptidase_MA_2 PF13485.1 gi|385775375|ref|YP_005647943.1| - 6e-06 26.3 0.0 1.1e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 Peptidase MA superfamily RecO_N_2 PF13114.1 gi|385775375|ref|YP_005647943.1| - 0.05 13.3 0.0 0.092 12.4 0.0 1.3 1 0 0 1 1 1 0 RecO N terminal GHL1-3 PF11308.3 gi|385775375|ref|YP_005647943.1| - 0.056 12.7 0.0 0.076 12.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases related to GH101 family, GHL1-GHL3 DUF3823 PF12866.2 gi|385775376|ref|YP_005647944.1| - 0.1 12.1 0.0 0.11 12.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3823) Ubie_methyltran PF01209.13 gi|385775377|ref|YP_005647945.1| - 2.3e-21 75.9 0.9 4.5e-21 75.0 0.6 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|385775377|ref|YP_005647945.1| - 2.5e-09 37.4 0.0 4.3e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385775377|ref|YP_005647945.1| - 2.9e-07 30.2 0.1 5.7e-07 29.2 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385775377|ref|YP_005647945.1| - 3e-06 27.5 0.0 1.2e-05 25.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385775377|ref|YP_005647945.1| - 5.9e-06 26.6 0.0 1.3e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|385775377|ref|YP_005647945.1| - 9.4e-06 25.1 0.0 1.6e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.1 gi|385775377|ref|YP_005647945.1| - 0.0001 22.0 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF1423 PF07227.6 gi|385775377|ref|YP_005647945.1| - 0.023 13.3 0.0 0.062 11.9 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1423) Methyltransf_18 PF12847.2 gi|385775377|ref|YP_005647945.1| - 0.037 14.6 0.0 0.13 12.7 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain ATG16 PF08614.6 gi|385775378|ref|YP_005647946.1| - 2.3e-05 24.3 5.0 2.3e-05 24.3 3.5 1.4 2 0 0 2 2 1 1 Autophagy protein 16 (ATG16) WEMBL PF05701.6 gi|385775378|ref|YP_005647946.1| - 0.00017 20.1 11.8 0.00017 20.1 8.2 1.7 1 1 0 1 1 1 1 Weak chloroplast movement under blue light AAA_13 PF13166.1 gi|385775378|ref|YP_005647946.1| - 0.00039 19.0 15.1 0.00061 18.3 10.5 1.3 1 0 0 1 1 1 1 AAA domain DUF1664 PF07889.7 gi|385775378|ref|YP_005647946.1| - 0.00039 20.2 17.1 0.083 12.6 0.4 4.2 2 1 2 4 4 4 2 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|385775378|ref|YP_005647946.1| - 0.00052 19.8 2.0 0.00052 19.8 1.4 2.8 2 1 1 3 3 2 1 Bacterial protein of unknown function (DUF948) Orbi_VP5 PF00901.12 gi|385775378|ref|YP_005647946.1| - 0.00055 18.2 10.2 0.0008 17.7 7.0 1.2 1 0 0 1 1 1 1 Orbivirus outer capsid protein VP5 Baculo_PEP_C PF04513.7 gi|385775378|ref|YP_005647946.1| - 0.0022 17.8 3.8 0.013 15.2 1.5 2.9 2 1 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|385775378|ref|YP_005647946.1| - 0.0023 16.6 14.1 0.0023 16.6 9.8 1.9 2 1 0 2 2 2 1 Spc7 kinetochore protein DUF2353 PF09789.4 gi|385775378|ref|YP_005647946.1| - 0.0025 17.1 9.9 0.0025 17.1 6.9 2.1 1 1 0 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) DUF904 PF06005.7 gi|385775378|ref|YP_005647946.1| - 0.0031 17.7 2.0 0.0031 17.7 1.4 3.6 2 1 1 3 3 3 1 Protein of unknown function (DUF904) HAUS5 PF14817.1 gi|385775378|ref|YP_005647946.1| - 0.004 15.7 2.8 0.0051 15.4 1.9 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 Reo_sigmaC PF04582.7 gi|385775378|ref|YP_005647946.1| - 0.011 14.9 0.1 0.017 14.3 0.1 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF2968 PF11180.3 gi|385775378|ref|YP_005647946.1| - 0.011 15.1 1.0 0.017 14.5 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Laminin_II PF06009.7 gi|385775378|ref|YP_005647946.1| - 0.012 15.3 1.1 0.012 15.3 0.8 2.7 2 1 1 3 3 2 0 Laminin Domain II DivIC PF04977.10 gi|385775378|ref|YP_005647946.1| - 0.013 14.9 0.8 0.013 14.9 0.6 4.7 3 1 2 5 5 5 0 Septum formation initiator Myosin_tail_1 PF01576.14 gi|385775378|ref|YP_005647946.1| - 0.015 13.0 14.9 0.0099 13.6 8.5 1.7 2 0 0 2 2 2 0 Myosin tail Syntaxin-6_N PF09177.6 gi|385775378|ref|YP_005647946.1| - 0.017 15.5 8.6 1.3 9.4 0.2 3.2 2 1 2 4 4 2 0 Syntaxin 6, N-terminal DUF3450 PF11932.3 gi|385775378|ref|YP_005647946.1| - 0.023 13.9 2.6 0.051 12.8 1.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) bZIP_1 PF00170.16 gi|385775378|ref|YP_005647946.1| - 0.023 14.6 0.6 0.023 14.6 0.4 3.8 3 1 1 4 4 4 0 bZIP transcription factor Rootletin PF15035.1 gi|385775378|ref|YP_005647946.1| - 0.027 14.4 8.5 0.046 13.6 5.9 1.4 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Hemerythrin PF01814.18 gi|385775378|ref|YP_005647946.1| - 0.028 14.5 3.2 4.4 7.4 0.7 2.6 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain FAINT PF04385.10 gi|385775378|ref|YP_005647946.1| - 0.029 14.2 1.1 7.8 6.4 0.2 2.8 2 1 0 2 2 2 0 Domain of unknown function, DUF529 DUF972 PF06156.8 gi|385775378|ref|YP_005647946.1| - 0.029 14.6 1.5 0.029 14.6 1.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|385775378|ref|YP_005647946.1| - 0.043 13.4 8.5 0.17 11.4 5.9 1.9 1 1 0 1 1 1 0 IncA protein Effector_1 PF04518.7 gi|385775378|ref|YP_005647946.1| - 0.044 12.7 3.2 0.06 12.3 2.2 1.3 1 0 0 1 1 1 0 Effector from type III secretion system APG6 PF04111.7 gi|385775378|ref|YP_005647946.1| - 0.067 12.2 10.2 0.16 11.0 7.0 1.7 1 1 0 1 1 1 0 Autophagy protein Apg6 Laminin_I PF06008.9 gi|385775378|ref|YP_005647946.1| - 0.083 12.1 11.3 0.03 13.6 3.5 2.3 2 1 1 3 3 2 0 Laminin Domain I DUF4618 PF15397.1 gi|385775378|ref|YP_005647946.1| - 0.087 12.1 16.3 0.18 11.0 11.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) ADIP PF11559.3 gi|385775378|ref|YP_005647946.1| - 0.11 12.3 12.3 0.021 14.7 5.6 1.9 2 1 0 2 2 1 0 Afadin- and alpha -actinin-Binding IL6 PF00489.12 gi|385775378|ref|YP_005647946.1| - 0.18 11.4 1.8 0.87 9.1 0.8 2.2 1 1 1 2 2 2 0 Interleukin-6/G-CSF/MGF family Uds1 PF15456.1 gi|385775378|ref|YP_005647946.1| - 0.2 11.6 8.6 1.2 9.1 0.1 3.3 1 1 2 3 3 3 0 Up-regulated During Septation Hemagglutinin PF00509.13 gi|385775378|ref|YP_005647946.1| - 0.21 9.7 11.1 0.56 8.2 0.7 2.3 1 1 1 2 2 2 0 Haemagglutinin Rep_fac_C PF08542.6 gi|385775378|ref|YP_005647946.1| - 0.23 11.4 4.0 8.8 6.3 0.3 3.4 2 1 1 3 3 3 0 Replication factor C C-terminal domain Lebercilin PF15619.1 gi|385775378|ref|YP_005647946.1| - 0.25 10.7 13.0 0.05 13.0 6.4 1.8 2 0 0 2 2 1 0 Ciliary protein causing Leber congenital amaurosis disease COG5 PF10392.4 gi|385775378|ref|YP_005647946.1| - 0.28 11.1 6.9 0.73 9.8 0.7 2.5 1 1 2 3 3 3 0 Golgi transport complex subunit 5 Shugoshin_N PF07558.6 gi|385775378|ref|YP_005647946.1| - 0.31 10.7 3.9 1.4 8.6 0.3 2.8 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region Nup88 PF10168.4 gi|385775378|ref|YP_005647946.1| - 0.37 8.5 13.4 0.52 8.0 9.3 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF3573 PF12097.3 gi|385775378|ref|YP_005647946.1| - 0.39 9.2 2.7 0.53 8.8 1.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3573) DUF615 PF04751.9 gi|385775378|ref|YP_005647946.1| - 0.39 10.3 8.1 0.65 9.6 5.2 1.8 2 1 0 2 2 1 0 Protein of unknown function (DUF615) Ku_PK_bind PF08785.6 gi|385775378|ref|YP_005647946.1| - 0.4 10.5 0.0 0.4 10.5 0.0 3.1 2 1 1 3 3 3 0 Ku C terminal domain like DUF2730 PF10805.3 gi|385775378|ref|YP_005647946.1| - 0.48 10.1 9.3 5.1 6.8 2.6 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) TMF_DNA_bd PF12329.3 gi|385775378|ref|YP_005647946.1| - 0.53 10.1 19.5 0.041 13.6 1.1 3.5 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.5 gi|385775378|ref|YP_005647946.1| - 0.65 10.1 15.7 0.97 9.5 4.4 2.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Atg14 PF10186.4 gi|385775378|ref|YP_005647946.1| - 0.83 8.5 10.3 1.7 7.5 7.1 1.7 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Med11 PF10280.4 gi|385775378|ref|YP_005647946.1| - 0.84 9.7 6.6 0.38 10.8 3.0 1.7 2 0 0 2 2 1 0 Mediator complex protein MCPsignal PF00015.16 gi|385775378|ref|YP_005647946.1| - 0.94 8.9 5.2 0.43 10.1 1.5 2.0 2 1 0 2 2 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Hormone_1 PF00103.15 gi|385775378|ref|YP_005647946.1| - 0.99 8.7 6.5 1.3 8.3 1.5 2.3 1 1 1 2 2 2 0 Somatotropin hormone family FlaC_arch PF05377.6 gi|385775378|ref|YP_005647946.1| - 1 9.3 18.0 0.18 11.7 0.9 4.4 3 2 1 4 4 4 0 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.4 gi|385775378|ref|YP_005647946.1| - 1.3 8.8 16.1 0.7 9.7 8.4 2.5 2 1 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COMP PF11598.3 gi|385775378|ref|YP_005647946.1| - 1.5 8.9 11.9 17 5.5 0.7 3.8 2 1 1 3 3 2 0 Cartilage oligomeric matrix protein TPR_MLP1_2 PF07926.7 gi|385775378|ref|YP_005647946.1| - 1.6 8.5 14.7 9.7 5.9 1.3 3.1 2 1 1 3 3 2 0 TPR/MLP1/MLP2-like protein GrpE PF01025.14 gi|385775378|ref|YP_005647946.1| - 2.1 7.8 13.2 4.1 6.9 0.6 2.6 1 1 1 2 2 2 0 GrpE Bap31 PF05529.7 gi|385775378|ref|YP_005647946.1| - 2.8 7.3 9.2 39 3.6 6.4 2.3 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like TMPIT PF07851.8 gi|385775378|ref|YP_005647946.1| - 3.1 6.7 8.7 0.29 10.1 0.8 1.9 1 1 1 2 2 2 0 TMPIT-like protein DUF4559 PF15112.1 gi|385775378|ref|YP_005647946.1| - 3.6 6.6 18.0 6 5.9 9.9 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4559) zf-C4H2 PF10146.4 gi|385775378|ref|YP_005647946.1| - 4.5 7.2 18.4 1.6 8.7 10.3 1.8 1 1 0 2 2 2 0 Zinc finger-containing protein TSC22 PF01166.13 gi|385775378|ref|YP_005647946.1| - 4.6 7.2 8.0 1.3 9.0 0.2 3.2 2 1 1 3 3 3 0 TSC-22/dip/bun family COG2 PF06148.6 gi|385775378|ref|YP_005647946.1| - 4.8 7.0 11.3 13 5.6 5.1 3.1 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Kinetocho_Slk19 PF12709.2 gi|385775378|ref|YP_005647946.1| - 5.3 7.1 12.5 3.7 7.7 0.7 3.5 2 1 1 3 3 2 0 Central kinetochore-associated ORF6C PF10552.4 gi|385775378|ref|YP_005647946.1| - 7 6.4 16.7 0.54 10.0 0.6 4.0 2 1 3 5 5 5 0 ORF6C domain V_ATPase_I PF01496.14 gi|385775378|ref|YP_005647946.1| - 8.2 4.1 13.0 10 3.8 8.1 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF1515 PF07439.6 gi|385775378|ref|YP_005647946.1| - 9 6.1 12.5 15 5.4 2.0 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Orthopox_A5L PF06193.6 gi|385775378|ref|YP_005647946.1| - 9.9 6.0 13.9 35 4.2 8.8 2.5 1 1 1 2 2 2 0 Orthopoxvirus A5L protein-like AA_permease PF00324.16 gi|385775379|ref|YP_005647947.1| - 0.00035 19.0 52.2 0.0023 16.3 35.8 2.2 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|385775379|ref|YP_005647947.1| - 0.0048 15.4 64.9 0.0081 14.7 18.8 2.4 1 1 1 2 2 2 2 Amino acid permease DUF981 PF06168.6 gi|385775380|ref|YP_005647948.1| - 1.9e-64 216.9 15.4 2.3e-64 216.6 10.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Colicin_V PF02674.11 gi|385775380|ref|YP_005647948.1| - 0.00057 19.7 5.0 0.00057 19.7 3.5 2.7 2 1 0 2 2 2 1 Colicin V production protein AmiS_UreI PF02293.10 gi|385775380|ref|YP_005647948.1| - 0.26 10.9 8.9 0.75 9.4 6.1 1.9 1 1 0 1 1 1 0 AmiS/UreI family transporter DUF1240 PF06836.7 gi|385775380|ref|YP_005647948.1| - 1.8 8.8 6.5 7.7 6.8 0.8 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1240) ATP-grasp_5 PF13549.1 gi|385775381|ref|YP_005647949.1| - 1.6e-47 161.6 0.4 2.9e-47 160.7 0.3 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|385775381|ref|YP_005647949.1| - 7.7e-47 158.3 0.0 2.3e-46 156.8 0.0 1.8 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|385775381|ref|YP_005647949.1| - 1.7e-22 79.7 0.4 1.7e-21 76.5 0.1 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|385775381|ref|YP_005647949.1| - 1.6e-15 57.3 0.2 6.1e-15 55.5 0.2 2.1 1 0 0 1 1 1 1 CoA binding domain RimK PF08443.6 gi|385775381|ref|YP_005647949.1| - 2.8e-05 23.6 0.1 5.7e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385775381|ref|YP_005647949.1| - 5.2e-05 23.0 0.0 9.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|385775381|ref|YP_005647949.1| - 0.0008 18.8 0.2 0.02 14.2 0.2 2.6 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|385775381|ref|YP_005647949.1| - 0.0012 18.3 0.1 0.0032 17.0 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.8 gi|385775381|ref|YP_005647949.1| - 0.0018 17.7 0.6 0.0059 16.0 0.1 1.9 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|385775381|ref|YP_005647949.1| - 0.013 14.8 0.3 0.042 13.2 0.0 2.0 2 0 0 2 2 2 0 ATP-grasp domain F420_oxidored PF03807.12 gi|385775381|ref|YP_005647949.1| - 0.054 13.9 0.8 8.4 6.8 0.0 3.3 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Fer4 PF00037.22 gi|385775383|ref|YP_005647951.1| - 2.1e-13 49.2 13.7 2.9e-07 29.7 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385775383|ref|YP_005647951.1| - 3.1e-11 43.3 6.8 4.2e-11 42.9 4.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385775383|ref|YP_005647951.1| - 3.1e-09 36.4 17.1 3.3e-07 29.9 4.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385775383|ref|YP_005647951.1| - 3.4e-09 36.9 8.1 5.8e-09 36.2 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385775383|ref|YP_005647951.1| - 3.7e-09 36.0 14.7 1.7e-06 27.5 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385775383|ref|YP_005647951.1| - 2.1e-07 30.6 4.6 3e-07 30.1 3.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385775383|ref|YP_005647951.1| - 5e-07 29.6 9.4 2e-05 24.4 4.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385775383|ref|YP_005647951.1| - 8e-07 28.6 11.6 0.0043 16.8 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385775383|ref|YP_005647951.1| - 1.2e-05 25.2 8.8 0.022 15.0 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385775383|ref|YP_005647951.1| - 2e-05 24.8 7.3 0.00058 20.2 0.3 2.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385775383|ref|YP_005647951.1| - 5.6e-05 23.4 15.5 0.0077 16.7 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385775383|ref|YP_005647951.1| - 8.4e-05 22.8 1.0 0.41 11.0 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385775383|ref|YP_005647951.1| - 0.00017 22.2 7.2 0.0074 17.0 1.7 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|385775383|ref|YP_005647951.1| - 0.00065 20.2 10.3 0.12 12.9 0.2 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|385775383|ref|YP_005647951.1| - 0.0094 16.3 13.9 0.25 11.7 9.6 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF2761 PF10959.3 gi|385775383|ref|YP_005647951.1| - 0.028 14.0 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) Hemerythrin PF01814.18 gi|385775385|ref|YP_005647953.1| - 2.1e-07 31.1 0.9 2.9e-07 30.7 0.6 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain COX2-transmemb PF09125.5 gi|385775387|ref|YP_005647955.1| - 2.5 7.7 4.6 15 5.2 0.4 2.9 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane TusA PF01206.12 gi|385775388|ref|YP_005647956.1| - 2.2e-25 88.0 0.0 2.6e-25 87.8 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|385775388|ref|YP_005647956.1| - 0.0065 16.0 0.0 0.017 14.6 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) SH3_3 PF08239.6 gi|385775388|ref|YP_005647956.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial SH3 domain Peptidase_U32 PF01136.14 gi|385775389|ref|YP_005647957.1| - 1.2e-22 79.9 0.0 5.6e-22 77.8 0.0 1.8 1 1 0 1 1 1 1 Peptidase family U32 Tn916-Xis PF09035.5 gi|385775389|ref|YP_005647957.1| - 0.11 12.6 0.6 2.2 8.4 0.1 2.7 2 0 0 2 2 2 0 Excisionase from transposon Tn916 Inhibitor_I9 PF05922.11 gi|385775389|ref|YP_005647957.1| - 0.15 12.6 0.2 0.37 11.3 0.0 1.8 2 0 0 2 2 2 0 Peptidase inhibitor I9 ECH PF00378.15 gi|385775390|ref|YP_005647958.1| - 1.4e-54 184.8 0.0 1.5e-54 184.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Plectin PF00681.15 gi|385775390|ref|YP_005647958.1| - 0.085 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Plectin repeat DLH PF01738.13 gi|385775390|ref|YP_005647958.1| - 0.13 11.5 0.2 6.2 6.0 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family PaaA_PaaC PF05138.7 gi|385775391|ref|YP_005647959.1| - 1.4e-06 27.4 0.0 1.6e-06 27.3 0.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein PaaX_C PF08223.6 gi|385775392|ref|YP_005647960.1| - 8.6e-29 100.4 0.0 9.3e-29 100.3 0.0 1.0 1 0 0 1 1 1 1 PaaX-like protein C-terminal domain GATase_6 PF13522.1 gi|385775393|ref|YP_005647961.1| - 3e-07 30.4 0.0 4.5e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|385775393|ref|YP_005647961.1| - 2.4e-05 23.1 0.0 2.9e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II OrfB_IS605 PF01385.14 gi|385775394|ref|YP_005647962.1| - 5e-27 94.7 6.7 6.4e-27 94.4 4.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775394|ref|YP_005647962.1| - 4.6e-24 83.8 0.1 9.4e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775394|ref|YP_005647962.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385775394|ref|YP_005647962.1| - 0.027 14.0 0.4 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385775394|ref|YP_005647962.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385775394|ref|YP_005647962.1| - 0.12 11.9 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385775394|ref|YP_005647962.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385775394|ref|YP_005647962.1| - 0.29 10.9 0.8 9 6.1 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385775394|ref|YP_005647962.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385775394|ref|YP_005647962.1| - 4.7 7.1 5.1 4.6 7.1 0.3 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Methyltransf_21 PF05050.7 gi|385775395|ref|YP_005647963.1| - 1.5e-13 51.0 0.2 1.7e-13 50.8 0.1 1.0 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_22 PF13383.1 gi|385775395|ref|YP_005647963.1| - 0.025 14.1 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Amidinotransf PF02274.12 gi|385775395|ref|YP_005647963.1| - 0.037 13.0 0.1 0.045 12.8 0.1 1.0 1 0 0 1 1 1 0 Amidinotransferase Ssu72 PF04722.8 gi|385775395|ref|YP_005647963.1| - 0.093 12.0 0.2 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Ssu72-like protein Oxidored_FMN PF00724.15 gi|385775396|ref|YP_005647964.1| - 1.9e-67 227.6 0.0 2.6e-67 227.2 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family NAD_binding_8 PF13450.1 gi|385775396|ref|YP_005647964.1| - 2.2e-07 30.8 0.0 5.3e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|385775396|ref|YP_005647964.1| - 7.5e-07 29.4 7.1 0.00011 22.4 1.4 4.3 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385775396|ref|YP_005647964.1| - 5.4e-06 25.5 1.1 1.1e-05 24.5 0.7 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|385775396|ref|YP_005647964.1| - 1.9e-05 24.8 0.0 0.00092 19.3 0.1 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|385775396|ref|YP_005647964.1| - 9.4e-05 22.1 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|385775396|ref|YP_005647964.1| - 0.00027 20.8 0.0 0.00058 19.7 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385775396|ref|YP_005647964.1| - 0.00043 18.8 0.8 0.00093 17.7 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|385775396|ref|YP_005647964.1| - 0.001 18.2 0.3 0.0029 16.7 0.2 1.7 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|385775396|ref|YP_005647964.1| - 0.0018 17.2 0.5 0.0029 16.5 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|385775396|ref|YP_005647964.1| - 0.0051 15.7 0.6 0.0074 15.1 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|385775396|ref|YP_005647964.1| - 0.011 14.8 1.1 0.017 14.2 0.8 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|385775396|ref|YP_005647964.1| - 0.018 14.0 1.3 0.028 13.4 0.9 1.2 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.16 gi|385775396|ref|YP_005647964.1| - 0.026 14.1 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|385775396|ref|YP_005647964.1| - 0.051 13.8 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|385775396|ref|YP_005647964.1| - 0.1 11.9 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.19 gi|385775396|ref|YP_005647964.1| - 0.14 11.2 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase 7kD_DNA_binding PF02294.13 gi|385775397|ref|YP_005647965.1| - 2e-43 145.9 4.6 2.2e-43 145.7 3.2 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain SWIM PF04434.12 gi|385775399|ref|YP_005647967.1| - 0.0004 19.7 0.0 0.0005 19.4 0.0 1.2 1 0 0 1 1 1 1 SWIM zinc finger DUF2102 PF09875.4 gi|385775399|ref|YP_005647967.1| - 0.071 12.6 0.1 0.079 12.4 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2102) DUF1286 PF06939.6 gi|385775400|ref|YP_005647968.1| - 1.1e-34 118.9 3.0 1.6e-34 118.4 2.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1286) DUF457 PF04307.9 gi|385775400|ref|YP_005647968.1| - 0.0015 17.9 1.9 0.0019 17.5 1.3 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Methyltransf_11 PF08241.7 gi|385775401|ref|YP_005647969.1| - 5.3e-19 68.5 0.0 8.1e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385775401|ref|YP_005647969.1| - 5.3e-19 68.3 0.1 6.3e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385775401|ref|YP_005647969.1| - 5.7e-16 58.6 0.0 6.9e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385775401|ref|YP_005647969.1| - 6e-10 39.1 0.0 8.5e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385775401|ref|YP_005647969.1| - 1.1e-09 38.6 0.0 2.3e-09 37.6 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385775401|ref|YP_005647969.1| - 1.5e-09 38.0 0.0 2.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385775401|ref|YP_005647969.1| - 1.6e-09 38.3 0.0 2.3e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385775401|ref|YP_005647969.1| - 4.6e-09 35.8 0.0 5.9e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|385775401|ref|YP_005647969.1| - 4.5e-08 32.4 0.0 9.9e-08 31.3 0.0 1.5 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|385775401|ref|YP_005647969.1| - 1.5e-07 30.8 0.1 1.9e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|385775401|ref|YP_005647969.1| - 3.1e-06 26.5 0.0 3.5e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|385775401|ref|YP_005647969.1| - 4.6e-06 26.3 0.0 6.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein FtsJ PF01728.14 gi|385775401|ref|YP_005647969.1| - 6e-06 26.3 0.0 7.1e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|385775401|ref|YP_005647969.1| - 1.4e-05 24.8 0.0 0.00012 21.7 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase GidB PF02527.10 gi|385775401|ref|YP_005647969.1| - 3.9e-05 22.8 0.0 4.7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.14 gi|385775401|ref|YP_005647969.1| - 7.4e-05 22.3 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Nol1_Nop2_Fmu PF01189.12 gi|385775401|ref|YP_005647969.1| - 8.1e-05 22.1 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family TehB PF03848.9 gi|385775401|ref|YP_005647969.1| - 0.00027 20.1 0.0 0.00037 19.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|385775401|ref|YP_005647969.1| - 0.0014 18.2 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|385775401|ref|YP_005647969.1| - 0.0016 17.3 0.0 0.0023 16.8 0.0 1.3 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_9 PF08003.6 gi|385775401|ref|YP_005647969.1| - 0.0041 15.8 0.0 0.0049 15.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|385775401|ref|YP_005647969.1| - 0.007 15.7 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.10 gi|385775401|ref|YP_005647969.1| - 0.0079 15.5 0.0 0.0097 15.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 NodS PF05401.6 gi|385775401|ref|YP_005647969.1| - 0.01 15.2 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_4 PF02390.12 gi|385775401|ref|YP_005647969.1| - 0.02 13.9 0.0 0.049 12.6 0.0 1.6 1 1 0 2 2 2 0 Putative methyltransferase HAD_2 PF13419.1 gi|385775402|ref|YP_005647970.1| - 1.2e-15 58.1 0.0 5.9e-15 55.9 0.0 1.8 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|385775402|ref|YP_005647970.1| - 0.0012 18.7 0.0 0.003 17.4 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385775402|ref|YP_005647970.1| - 0.0052 17.2 0.0 0.017 15.5 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385775402|ref|YP_005647970.1| - 0.089 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like DUF2955 PF11168.3 gi|385775403|ref|YP_005647971.1| - 7.2 6.2 13.8 0.057 13.0 2.7 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2955) ABC_tran PF00005.22 gi|385775404|ref|YP_005647972.1| - 2.6e-50 170.3 0.4 9.9e-25 87.4 0.1 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|385775404|ref|YP_005647972.1| - 2.4e-23 83.5 3.8 8.3e-11 42.3 0.0 4.6 2 2 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|385775404|ref|YP_005647972.1| - 1.1e-10 40.8 3.2 4e-05 23.0 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|385775404|ref|YP_005647972.1| - 1.8e-10 40.7 2.7 0.0014 18.1 0.0 3.3 2 1 0 3 3 3 3 AAA-like domain SMC_N PF02463.14 gi|385775404|ref|YP_005647972.1| - 2.6e-10 39.9 3.5 1.9e-05 24.0 0.1 3.3 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385775404|ref|YP_005647972.1| - 7.2e-09 35.1 0.1 0.0013 17.9 0.2 3.8 4 0 0 4 4 4 1 AAA ATPase domain AAA_23 PF13476.1 gi|385775404|ref|YP_005647972.1| - 1.7e-08 35.0 0.9 0.00025 21.4 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|385775404|ref|YP_005647972.1| - 3e-08 33.3 0.2 0.096 12.4 0.0 3.4 3 0 0 3 3 3 2 Part of AAA domain AAA_16 PF13191.1 gi|385775404|ref|YP_005647972.1| - 6.6e-07 29.5 0.1 0.0032 17.4 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain T2SE PF00437.15 gi|385775404|ref|YP_005647972.1| - 8.1e-07 28.2 1.1 0.0096 14.8 0.2 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein DUF258 PF03193.11 gi|385775404|ref|YP_005647972.1| - 2.2e-06 26.9 2.7 0.019 14.1 0.4 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|385775404|ref|YP_005647972.1| - 5.5e-06 25.9 0.1 0.057 12.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|385775404|ref|YP_005647972.1| - 6.1e-06 25.9 1.3 0.01 15.4 0.1 2.5 2 0 0 2 2 2 2 NACHT domain FtsK_SpoIIIE PF01580.13 gi|385775404|ref|YP_005647972.1| - 8.2e-06 25.4 2.3 0.0021 17.5 0.0 2.7 3 0 0 3 3 3 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|385775404|ref|YP_005647972.1| - 1.5e-05 25.1 3.5 0.19 11.8 0.0 3.3 3 0 0 3 3 3 2 AAA domain DUF87 PF01935.12 gi|385775404|ref|YP_005647972.1| - 4.5e-05 23.3 3.3 0.16 11.7 0.3 3.3 2 1 0 3 3 3 1 Domain of unknown function DUF87 Arch_ATPase PF01637.13 gi|385775404|ref|YP_005647972.1| - 8.7e-05 22.3 0.4 0.078 12.6 0.1 2.4 2 0 0 2 2 2 1 Archaeal ATPase NTPase_1 PF03266.10 gi|385775404|ref|YP_005647972.1| - 0.0001 22.0 2.5 0.11 12.2 0.1 2.9 2 0 0 2 2 2 2 NTPase ABC_ATPase PF09818.4 gi|385775404|ref|YP_005647972.1| - 0.00011 21.0 6.6 0.33 9.4 0.2 4.5 4 1 1 5 5 5 2 Predicted ATPase of the ABC class UPF0079 PF02367.12 gi|385775404|ref|YP_005647972.1| - 0.00011 21.8 2.0 0.0097 15.5 0.3 2.8 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|385775404|ref|YP_005647972.1| - 0.00012 21.3 0.4 0.027 13.6 0.0 2.7 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|385775404|ref|YP_005647972.1| - 0.00013 21.5 0.5 0.53 9.8 0.0 2.7 3 0 0 3 3 2 2 AAA domain NB-ARC PF00931.17 gi|385775404|ref|YP_005647972.1| - 0.0002 20.3 1.6 0.19 10.5 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Miro PF08477.8 gi|385775404|ref|YP_005647972.1| - 0.00024 21.5 0.3 0.58 10.6 0.0 2.6 2 0 0 2 2 2 2 Miro-like protein AAA_18 PF13238.1 gi|385775404|ref|YP_005647972.1| - 0.0003 21.0 1.3 0.62 10.3 0.1 3.3 3 0 0 3 3 3 1 AAA domain cobW PF02492.14 gi|385775404|ref|YP_005647972.1| - 0.00063 19.2 2.5 0.056 12.8 0.4 2.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|385775404|ref|YP_005647972.1| - 0.00068 19.4 0.0 0.031 14.1 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Zot PF05707.7 gi|385775404|ref|YP_005647972.1| - 0.00078 18.9 1.9 0.23 10.9 0.1 3.2 2 2 0 2 2 2 1 Zonular occludens toxin (Zot) PduV-EutP PF10662.4 gi|385775404|ref|YP_005647972.1| - 0.0016 17.9 1.0 0.8 9.1 0.1 3.0 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|385775404|ref|YP_005647972.1| - 0.0019 17.8 3.3 1.2 8.8 0.4 2.8 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|385775404|ref|YP_005647972.1| - 0.002 18.0 0.3 2.4 8.0 0.0 3.1 3 1 0 3 3 2 1 AAA domain MMR_HSR1 PF01926.18 gi|385775404|ref|YP_005647972.1| - 0.0023 17.8 1.2 1.4 8.8 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase KaiC PF06745.8 gi|385775404|ref|YP_005647972.1| - 0.0036 16.4 4.6 0.32 10.0 0.0 3.3 3 0 0 3 3 3 1 KaiC PIF1 PF05970.9 gi|385775404|ref|YP_005647972.1| - 0.004 16.1 0.9 1.9 7.3 0.2 3.3 4 0 0 4 4 4 1 PIF1-like helicase AAA_17 PF13207.1 gi|385775404|ref|YP_005647972.1| - 0.0056 17.4 7.8 0.13 13.1 0.4 3.3 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|385775404|ref|YP_005647972.1| - 0.0059 16.3 1.2 3.2 7.4 0.0 2.9 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|385775404|ref|YP_005647972.1| - 0.0062 16.1 3.1 1.4 8.4 0.6 3.1 3 1 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|385775404|ref|YP_005647972.1| - 0.0065 16.3 0.2 4.7 7.0 0.0 2.7 3 0 0 3 3 2 0 AAA domain DUF815 PF05673.8 gi|385775404|ref|YP_005647972.1| - 0.0099 14.8 0.2 1.2 8.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|385775404|ref|YP_005647972.1| - 0.011 15.8 0.2 5.7 7.1 0.0 2.5 2 0 0 2 2 2 0 RNA helicase ATP_bind_1 PF03029.12 gi|385775404|ref|YP_005647972.1| - 0.017 14.6 0.4 6.6 6.1 0.0 3.0 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_13 PF13166.1 gi|385775404|ref|YP_005647972.1| - 0.017 13.5 0.0 0.37 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|385775404|ref|YP_005647972.1| - 0.019 15.1 0.8 2 8.6 0.2 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|385775404|ref|YP_005647972.1| - 0.021 14.2 0.4 0.8 9.1 0.2 2.5 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Gtr1_RagA PF04670.7 gi|385775404|ref|YP_005647972.1| - 0.024 13.7 2.7 1.6 7.7 0.1 2.3 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Zeta_toxin PF06414.7 gi|385775404|ref|YP_005647972.1| - 0.032 13.3 0.1 8.8 5.3 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin Viral_helicase1 PF01443.13 gi|385775404|ref|YP_005647972.1| - 0.039 13.4 0.1 1.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.9 gi|385775404|ref|YP_005647972.1| - 0.048 12.6 0.3 3.4 6.5 0.0 2.6 2 1 0 3 3 3 0 KAP family P-loop domain PhoH PF02562.11 gi|385775404|ref|YP_005647972.1| - 0.058 12.6 0.2 3.2 6.9 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein Resolvase PF00239.16 gi|385775404|ref|YP_005647972.1| - 0.058 13.2 0.2 11 5.9 0.0 2.3 2 0 0 2 2 2 0 Resolvase, N terminal domain Sigma54_activat PF00158.21 gi|385775404|ref|YP_005647972.1| - 0.067 12.6 0.5 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain G-alpha PF00503.15 gi|385775404|ref|YP_005647972.1| - 0.07 11.8 0.5 7.9 5.0 0.1 2.2 2 0 0 2 2 2 0 G-protein alpha subunit DEAD PF00270.24 gi|385775404|ref|YP_005647972.1| - 0.083 12.3 0.3 2.1 7.8 0.0 2.6 3 0 0 3 3 2 0 DEAD/DEAH box helicase APS_kinase PF01583.15 gi|385775404|ref|YP_005647972.1| - 0.092 12.4 0.8 1.9 8.1 0.0 2.8 3 0 0 3 3 3 0 Adenylylsulphate kinase DLIC PF05783.6 gi|385775404|ref|YP_005647972.1| - 0.18 10.4 1.0 11 4.5 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) DAP3 PF10236.4 gi|385775404|ref|YP_005647972.1| - 0.29 10.0 1.2 5.1 5.9 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 CbiQ PF02361.11 gi|385775405|ref|YP_005647973.1| - 8.9e-14 51.5 16.1 8.9e-14 51.5 11.1 1.9 2 0 0 2 2 2 1 Cobalt transport protein Col_cuticle_N PF01484.12 gi|385775406|ref|YP_005647974.1| - 5.9 6.6 6.2 9.4 6.0 4.3 1.4 1 1 0 1 1 1 0 Nematode cuticle collagen N-terminal domain MFS_1 PF07690.11 gi|385775408|ref|YP_005647976.1| - 3.5e-23 81.8 43.3 9.2e-16 57.4 13.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2583 PF10762.4 gi|385775408|ref|YP_005647976.1| - 4.8 7.3 7.0 5 7.3 0.1 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2583) DEAD PF00270.24 gi|385775409|ref|YP_005647977.1| - 3.8e-46 156.6 0.1 2.5e-44 150.7 0.0 2.6 1 1 2 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385775409|ref|YP_005647977.1| - 1.1e-26 92.4 0.1 3.9e-26 90.7 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385775409|ref|YP_005647977.1| - 8.9e-08 32.1 0.0 2e-07 31.0 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|385775409|ref|YP_005647977.1| - 9.8e-05 22.0 0.0 0.0093 15.6 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|385775409|ref|YP_005647977.1| - 0.0019 18.3 2.8 0.02 15.0 1.4 3.0 2 1 0 2 2 2 1 AAA domain SecA_DEAD PF07517.9 gi|385775409|ref|YP_005647977.1| - 0.0048 16.2 1.1 0.03 13.6 0.8 2.2 1 1 0 1 1 1 1 SecA DEAD-like domain T4SS-DNA_transf PF02534.9 gi|385775409|ref|YP_005647977.1| - 0.0061 15.1 0.0 0.015 13.9 0.0 1.7 1 1 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer Shikimate_DH PF01488.15 gi|385775409|ref|YP_005647977.1| - 0.027 14.5 0.4 1.1 9.3 0.1 3.1 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase CobA_CobO_BtuR PF02572.10 gi|385775409|ref|YP_005647977.1| - 0.051 13.2 0.3 11 5.6 0.0 2.6 1 1 1 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DUF3848 PF12959.2 gi|385775409|ref|YP_005647977.1| - 0.071 13.0 0.1 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3848) Flavi_DEAD PF07652.9 gi|385775409|ref|YP_005647977.1| - 0.097 12.4 0.1 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 Flavivirus DEAD domain Thermopsin PF05317.6 gi|385775410|ref|YP_005647978.1| - 2.7e-84 282.2 19.4 2.7e-84 282.2 13.4 2.5 2 1 0 3 3 3 1 Thermopsin Rifin_STEVOR PF02009.11 gi|385775410|ref|YP_005647978.1| - 1.4 8.5 4.5 2.1 7.9 3.1 1.2 1 0 0 1 1 1 0 Rifin/stevor family DUF457 PF04307.9 gi|385775411|ref|YP_005647979.1| - 6.1e-14 51.6 24.6 1.2e-12 47.4 17.1 3.0 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MFS_1 PF07690.11 gi|385775412|ref|YP_005647980.1| - 1.7e-36 125.6 75.7 8.4e-28 97.0 28.9 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775412|ref|YP_005647980.1| - 2.9e-27 95.3 38.8 3.8e-18 65.3 10.8 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|385775412|ref|YP_005647980.1| - 1.2e-06 27.2 16.6 1.2e-06 27.2 11.5 3.0 1 1 1 3 3 3 2 MFS/sugar transport protein Nuc_H_symport PF03825.11 gi|385775412|ref|YP_005647980.1| - 0.00015 20.7 15.2 0.00027 19.8 10.5 1.5 1 0 0 1 1 1 1 Nucleoside H+ symporter Amidohydro_1 PF01979.15 gi|385775413|ref|YP_005647981.1| - 1.1e-58 199.5 0.5 1.3e-58 199.2 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385775413|ref|YP_005647981.1| - 1.6e-13 51.3 0.0 1.3e-05 25.3 0.0 2.8 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|385775413|ref|YP_005647981.1| - 2.5e-13 49.6 0.1 1.1e-12 47.5 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385775413|ref|YP_005647981.1| - 1.6e-12 47.3 0.6 1.8e-08 34.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family URO-D PF01208.12 gi|385775413|ref|YP_005647981.1| - 0.073 11.9 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) ThiS-like PF14453.1 gi|385775413|ref|YP_005647981.1| - 0.1 12.4 2.4 0.14 12.0 0.3 2.2 2 1 0 2 2 2 0 ThiS-like ubiquitin AMP-binding PF00501.23 gi|385775414|ref|YP_005647982.1| - 2.6e-79 266.5 0.0 3.6e-79 266.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385775414|ref|YP_005647982.1| - 2.1e-15 57.4 0.2 4.6e-15 56.3 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Transp_cyt_pur PF02133.10 gi|385775415|ref|YP_005647983.1| - 1.9e-83 280.4 40.8 2.2e-83 280.2 28.3 1.0 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AA_permease_2 PF13520.1 gi|385775416|ref|YP_005647984.1| - 3.9e-43 147.5 57.5 3.9e-43 147.5 39.9 2.6 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|385775416|ref|YP_005647984.1| - 1e-27 96.6 56.2 1e-27 96.6 38.9 2.9 1 1 2 3 3 3 1 Amino acid permease ELFV_dehydrog PF00208.16 gi|385775417|ref|YP_005647985.1| - 3.4e-72 242.9 6.9 4.4e-72 242.5 4.2 1.6 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|385775417|ref|YP_005647985.1| - 9.8e-50 167.5 0.0 1.8e-49 166.6 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AlaDh_PNT_C PF01262.16 gi|385775417|ref|YP_005647985.1| - 0.0007 19.1 1.6 0.0016 18.0 0.2 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|385775417|ref|YP_005647985.1| - 0.004 16.3 0.4 0.0072 15.4 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|385775417|ref|YP_005647985.1| - 0.012 15.8 0.9 0.12 12.6 0.1 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|385775417|ref|YP_005647985.1| - 0.091 12.7 0.3 0.27 11.2 0.2 1.8 1 0 0 1 1 1 0 TrkA-N domain OrfB_IS605 PF01385.14 gi|385775418|ref|YP_005647986.1| - 4.8e-27 94.8 6.7 6.2e-27 94.4 4.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775418|ref|YP_005647986.1| - 4.7e-24 83.8 0.1 9.4e-24 82.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775418|ref|YP_005647986.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385775418|ref|YP_005647986.1| - 0.027 14.1 0.4 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385775418|ref|YP_005647986.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385775418|ref|YP_005647986.1| - 0.11 11.9 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385775418|ref|YP_005647986.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385775418|ref|YP_005647986.1| - 0.29 10.9 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385775418|ref|YP_005647986.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385775418|ref|YP_005647986.1| - 4.7 7.1 5.1 4.6 7.1 0.3 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Thermopsin PF05317.6 gi|385775419|ref|YP_005647987.1| - 4.6e-81 271.6 17.7 4.6e-81 271.6 12.2 4.1 4 1 1 5 5 5 1 Thermopsin Big_3_4 PF13754.1 gi|385775419|ref|YP_005647987.1| - 6.9e-14 51.9 7.1 0.018 15.3 0.0 6.9 5 1 1 6 6 6 5 Bacterial Ig-like domain (group 3) BiPBP_C PF06832.7 gi|385775419|ref|YP_005647987.1| - 6.9e-09 35.5 0.0 0.11 12.4 0.0 4.1 3 1 1 4 4 4 3 Penicillin-Binding Protein C-terminus Family DUF4625 PF15418.1 gi|385775419|ref|YP_005647987.1| - 8e-05 22.7 1.8 0.67 10.0 0.0 4.3 4 0 0 4 4 4 1 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|385775419|ref|YP_005647987.1| - 0.00018 21.1 25.8 0.00093 18.9 0.1 5.5 6 0 0 6 6 6 3 Y_Y_Y domain Rifin_STEVOR PF02009.11 gi|385775419|ref|YP_005647987.1| - 0.064 12.8 0.9 0.11 12.1 0.6 1.3 1 0 0 1 1 1 0 Rifin/stevor family DUF4399 PF14347.1 gi|385775419|ref|YP_005647987.1| - 0.075 13.0 0.0 32 4.6 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4399) DUF824 PF05688.6 gi|385775419|ref|YP_005647987.1| - 0.15 11.7 0.1 53 3.5 0.0 3.7 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Shisa PF13908.1 gi|385775419|ref|YP_005647987.1| - 3 7.9 4.1 5 7.2 2.8 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator OrfB_IS605 PF01385.14 gi|385775420|ref|YP_005647988.1| - 5.9e-38 130.5 6.8 1.1e-37 129.7 4.7 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775420|ref|YP_005647988.1| - 1.8e-27 94.7 0.3 4.9e-27 93.3 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385775420|ref|YP_005647988.1| - 1.5e-08 33.7 1.2 2e-08 33.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|385775420|ref|YP_005647988.1| - 0.038 13.2 0.6 8.2 5.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|385775420|ref|YP_005647988.1| - 0.059 13.0 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3543 PF12063.3 gi|385775420|ref|YP_005647988.1| - 0.079 12.1 3.2 1 8.5 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3543) zinc_ribbon_2 PF13240.1 gi|385775420|ref|YP_005647988.1| - 0.098 12.1 2.1 7.5 6.1 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|385775420|ref|YP_005647988.1| - 0.12 12.1 0.4 0.24 11.2 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|385775420|ref|YP_005647988.1| - 0.13 11.6 1.6 4.5 6.6 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|385775420|ref|YP_005647988.1| - 0.58 10.3 3.4 0.48 10.5 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Y1_Tnp PF01797.11 gi|385775421|ref|YP_005647989.1| - 1.8e-38 131.1 2.2 2e-38 130.9 1.5 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF1638 PF07796.6 gi|385775421|ref|YP_005647989.1| - 0.08 12.5 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) FBP PF07299.6 gi|385775421|ref|YP_005647989.1| - 0.12 11.7 0.7 0.17 11.2 0.5 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) DUF4303 PF14136.1 gi|385775422|ref|YP_005647990.1| - 0.0068 16.0 0.1 0.0072 15.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4303) DUF4358 PF14270.1 gi|385775422|ref|YP_005647990.1| - 0.15 11.9 0.8 0.17 11.7 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) Fic PF02661.13 gi|385775423|ref|YP_005647991.1| - 2.7e-08 34.4 0.3 5.6e-08 33.3 0.1 1.8 2 1 0 2 2 2 1 Fic/DOC family W2 PF02020.13 gi|385775423|ref|YP_005647991.1| - 0.0047 16.8 0.1 0.028 14.3 0.0 2.1 2 0 0 2 2 2 1 eIF4-gamma/eIF5/eIF2-epsilon MFS_1 PF07690.11 gi|385775425|ref|YP_005647993.1| - 2.6e-50 171.1 46.7 1e-35 123.1 19.5 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775425|ref|YP_005647993.1| - 4.8e-10 38.5 10.1 4.8e-10 38.5 7.0 2.8 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|385775425|ref|YP_005647993.1| - 0.00014 20.3 7.3 0.00014 20.3 5.1 3.3 1 1 2 3 3 3 2 MFS/sugar transport protein OATP PF03137.15 gi|385775425|ref|YP_005647993.1| - 0.0031 15.6 0.7 0.0031 15.6 0.5 3.4 3 1 1 4 4 4 2 Organic Anion Transporter Polypeptide (OATP) family PIN PF01850.16 gi|385775426|ref|YP_005647994.1| - 1.6e-11 44.5 0.3 1.9e-11 44.3 0.2 1.1 1 0 0 1 1 1 1 PIN domain MraZ PF02381.13 gi|385775427|ref|YP_005647995.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 MraZ protein S1FA PF04689.8 gi|385775430|ref|YP_005647998.1| - 0.04 13.8 3.8 0.19 11.5 0.6 2.3 2 0 0 2 2 2 0 DNA binding protein S1FA YwhD PF08741.5 gi|385775430|ref|YP_005647998.1| - 0.094 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 YwhD family Hemerythrin PF01814.18 gi|385775431|ref|YP_005647999.1| - 0.00023 21.3 1.7 0.016 15.3 0.4 2.1 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain Zn_Tnp_IS1595 PF12760.2 gi|385775432|ref|YP_005648000.1| - 8e-06 25.5 4.8 0.0001 22.0 0.4 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385775432|ref|YP_005648000.1| - 9.1e-05 22.0 2.0 0.0051 16.4 0.2 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775432|ref|YP_005648000.1| - 0.0026 17.0 4.9 0.061 12.6 0.1 2.5 2 1 0 2 2 2 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|385775432|ref|YP_005648000.1| - 0.0059 16.5 3.2 1.1 9.1 0.1 2.1 1 1 1 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|385775432|ref|YP_005648000.1| - 0.0071 15.7 1.3 3.1 7.3 0.0 2.6 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385775432|ref|YP_005648000.1| - 0.017 15.0 3.2 6.1 6.8 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.2 gi|385775432|ref|YP_005648000.1| - 0.032 14.0 4.6 1.3 8.8 3.2 2.3 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|385775432|ref|YP_005648000.1| - 0.052 13.0 6.5 2.1 7.9 0.6 3.1 2 1 0 2 2 2 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|385775432|ref|YP_005648000.1| - 0.065 12.8 8.3 3.1 7.4 0.0 3.1 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) C1_3 PF07649.7 gi|385775432|ref|YP_005648000.1| - 0.13 12.3 0.1 0.13 12.3 0.1 2.6 3 0 0 3 3 3 0 C1-like domain Cas_CXXC_CXXC PF09706.5 gi|385775432|ref|YP_005648000.1| - 0.16 12.2 3.3 10 6.3 0.3 2.4 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) FYVE_2 PF02318.11 gi|385775432|ref|YP_005648000.1| - 0.21 11.5 3.6 0.16 11.9 0.3 1.9 1 1 1 2 2 2 0 FYVE-type zinc finger zinc_ribbon_5 PF13719.1 gi|385775432|ref|YP_005648000.1| - 0.21 11.1 8.0 1.9 8.1 1.0 3.0 2 1 0 2 2 2 0 zinc-ribbon domain zf-CCHC_5 PF14787.1 gi|385775432|ref|YP_005648000.1| - 0.24 10.9 2.6 3.9 7.0 0.3 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger IBR PF01485.16 gi|385775432|ref|YP_005648000.1| - 0.24 11.2 6.3 0.2 11.5 0.5 2.1 1 1 0 2 2 2 0 IBR domain zf-NADH-PPase PF09297.6 gi|385775432|ref|YP_005648000.1| - 0.27 10.7 7.2 3.9 7.0 0.7 2.6 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|385775432|ref|YP_005648000.1| - 0.3 10.3 7.2 1.7 7.9 0.0 2.5 3 0 0 3 3 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|385775432|ref|YP_005648000.1| - 0.3 10.7 6.2 3.5 7.4 0.0 2.5 3 0 0 3 3 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|385775432|ref|YP_005648000.1| - 0.35 10.5 8.5 4.6 7.0 1.3 3.1 2 1 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|385775432|ref|YP_005648000.1| - 0.38 10.4 5.6 8.3 6.1 0.0 2.9 2 1 0 2 2 2 0 Nudix N-terminal zf-C4_ClpX PF06689.8 gi|385775432|ref|YP_005648000.1| - 0.43 10.1 0.2 0.43 10.1 0.1 2.7 2 1 1 3 3 3 0 ClpX C4-type zinc finger zf-UBR PF02207.15 gi|385775432|ref|YP_005648000.1| - 0.59 9.8 8.4 2.5 7.8 0.6 2.6 2 1 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Lar_restr_allev PF14354.1 gi|385775432|ref|YP_005648000.1| - 0.72 10.2 4.0 3.4 8.0 0.3 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-CHY PF05495.7 gi|385775432|ref|YP_005648000.1| - 0.75 9.9 4.0 3.4 7.8 2.8 1.9 1 1 0 1 1 1 0 CHY zinc finger zf-CSL PF05207.8 gi|385775432|ref|YP_005648000.1| - 0.87 9.1 4.5 9 5.8 3.1 2.3 1 1 0 1 1 1 0 CSL zinc finger zf-B_box PF00643.19 gi|385775432|ref|YP_005648000.1| - 0.89 9.4 7.5 11 6.0 0.5 2.9 2 1 0 2 2 2 0 B-box zinc finger zf-UBP PF02148.14 gi|385775432|ref|YP_005648000.1| - 1 9.5 4.2 5.5 7.1 2.9 2.1 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein DUF2296 PF10058.4 gi|385775432|ref|YP_005648000.1| - 1 9.1 5.8 3.1 7.6 0.8 2.5 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) PhnA_Zn_Ribbon PF08274.7 gi|385775432|ref|YP_005648000.1| - 1 9.1 8.6 2.2 8.1 0.4 2.7 2 1 0 2 2 2 0 PhnA Zinc-Ribbon RNA_POL_M_15KD PF02150.11 gi|385775432|ref|YP_005648000.1| - 1.1 9.0 6.2 0.66 9.7 0.9 2.4 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit CpXC PF14353.1 gi|385775432|ref|YP_005648000.1| - 1.2 9.0 3.8 5.4 6.9 2.6 2.0 1 1 0 1 1 1 0 CpXC protein zf-ISL3 PF14690.1 gi|385775432|ref|YP_005648000.1| - 1.6 8.8 9.6 8 6.5 2.4 2.9 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|385775432|ref|YP_005648000.1| - 1.6 7.9 5.0 3.9 6.7 1.4 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF35_N PF12172.3 gi|385775432|ref|YP_005648000.1| - 2.1 8.3 6.4 6.7 6.7 0.2 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.15 gi|385775432|ref|YP_005648000.1| - 3.1 7.7 8.1 18 5.2 0.6 3.1 3 0 0 3 3 3 0 Rubredoxin zf-FPG_IleRS PF06827.9 gi|385775432|ref|YP_005648000.1| - 5.9 6.6 6.0 4.8 6.9 0.1 2.8 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Auto_anti-p27 PF06677.7 gi|385775432|ref|YP_005648000.1| - 6.4 6.6 6.0 3.3 7.5 0.4 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2082 PF09855.4 gi|385775432|ref|YP_005648000.1| - 9 6.2 6.4 6.4 6.6 0.1 2.8 2 1 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) LigB PF02900.13 gi|385775433|ref|YP_005648001.1| - 9.8e-57 191.9 0.0 1.1e-56 191.8 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Memo PF01875.12 gi|385775433|ref|YP_005648001.1| - 0.0003 19.7 0.0 0.0013 17.6 0.0 1.8 2 0 0 2 2 2 1 Memo-like protein Cass2 PF14526.1 gi|385775433|ref|YP_005648001.1| - 0.062 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Integron-associated effector binding protein HpaB_N PF11794.3 gi|385775434|ref|YP_005648002.1| - 2.4e-79 266.4 0.0 3.6e-79 265.8 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|385775434|ref|YP_005648002.1| - 2.6e-51 173.4 0.0 3.6e-51 172.9 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal TP6A_N PF04406.9 gi|385775434|ref|YP_005648002.1| - 0.069 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Type IIB DNA topoisomerase Glyoxalase PF00903.20 gi|385775435|ref|YP_005648003.1| - 3.5e-24 85.2 0.4 7.8e-13 48.5 0.3 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|385775435|ref|YP_005648003.1| - 1.9e-15 57.4 0.1 9.5e-10 39.0 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|385775435|ref|YP_005648003.1| - 3.9e-14 52.5 0.0 4.9e-07 29.7 0.0 3.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GIDE PF12483.3 gi|385775435|ref|YP_005648003.1| - 0.048 13.0 0.0 0.078 12.3 0.0 1.2 1 0 0 1 1 1 0 E3 Ubiquitin ligase Pox_A_type_inc PF04508.7 gi|385775435|ref|YP_005648003.1| - 2.3 8.2 6.0 4.8 7.2 0.3 2.9 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat Flavin_Reduct PF01613.13 gi|385775436|ref|YP_005648004.1| - 1.9e-26 92.7 0.0 2.2e-26 92.5 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|385775436|ref|YP_005648004.1| - 8.1e-06 25.5 0.1 1.3e-05 24.8 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF447) Sugar_tr PF00083.19 gi|385775437|ref|YP_005648005.1| - 1.1e-42 146.2 31.2 1.6e-42 145.6 21.6 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|385775437|ref|YP_005648005.1| - 3.1e-30 105.0 98.4 6e-27 94.2 39.7 3.5 1 1 2 3 3 3 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|385775437|ref|YP_005648005.1| - 0.0078 16.2 12.5 0.029 14.3 0.3 3.9 3 1 0 3 3 3 2 Protein of unknown function (DUF1228) HTH_10 PF04967.7 gi|385775438|ref|YP_005648006.1| - 5.4e-22 77.1 0.1 9.8e-22 76.2 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_17 PF12728.2 gi|385775438|ref|YP_005648006.1| - 0.0052 17.0 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|385775438|ref|YP_005648006.1| - 0.0074 15.5 0.1 0.12 11.7 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|385775438|ref|YP_005648006.1| - 0.013 15.2 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|385775438|ref|YP_005648006.1| - 0.022 14.5 0.1 0.29 10.9 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_24 PF13412.1 gi|385775438|ref|YP_005648006.1| - 0.034 13.5 0.1 0.093 12.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF134 PF02001.11 gi|385775438|ref|YP_005648006.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF134 Sigma70_r4 PF04545.11 gi|385775438|ref|YP_005648006.1| - 0.12 11.6 0.0 0.3 10.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 AMP-binding PF00501.23 gi|385775439|ref|YP_005648007.1| - 3.4e-72 243.1 0.0 4e-72 242.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385775439|ref|YP_005648007.1| - 1.4e-14 54.8 0.2 2.9e-13 50.5 0.1 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain CRISPR_Cas2 PF09827.4 gi|385775439|ref|YP_005648007.1| - 0.017 15.2 0.0 0.096 12.8 0.0 2.1 2 0 0 2 2 2 0 CRISPR associated protein Cas2 Acyl-CoA_dh_1 PF00441.19 gi|385775440|ref|YP_005648008.1| - 2.5e-45 154.2 0.3 4.5e-45 153.4 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|385775440|ref|YP_005648008.1| - 5.2e-16 57.8 0.1 9.3e-16 57.0 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|385775440|ref|YP_005648008.1| - 3.5e-15 56.5 0.0 1.2e-14 54.8 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|385775440|ref|YP_005648008.1| - 6.9e-14 52.2 0.0 7.1e-13 48.9 0.0 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Thiolase_C PF02803.13 gi|385775441|ref|YP_005648009.1| - 0.0048 16.3 0.0 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_C PF02803.13 gi|385775442|ref|YP_005648010.1| - 0.00017 20.9 0.0 0.54 9.6 0.0 2.6 2 0 0 2 2 2 2 Thiolase, C-terminal domain Peptidase_M22 PF00814.20 gi|385775442|ref|YP_005648010.1| - 0.12 11.8 0.0 0.29 10.5 0.0 1.6 1 0 0 1 1 1 0 Glycoprotease family Thiolase_N PF00108.18 gi|385775442|ref|YP_005648010.1| - 0.12 11.2 0.0 3.8 6.3 0.0 2.2 2 0 0 2 2 2 0 Thiolase, N-terminal domain DUF35_N PF12172.3 gi|385775443|ref|YP_005648011.1| - 2.6e-07 30.3 0.4 5.1e-07 29.4 0.3 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|385775443|ref|YP_005648011.1| - 1.1e-05 25.5 0.0 1.7e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF2616 PF11077.3 gi|385775443|ref|YP_005648011.1| - 0.055 12.9 0.1 0.072 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) NMD3 PF04981.8 gi|385775443|ref|YP_005648011.1| - 0.074 12.1 0.8 0.12 11.4 0.5 1.3 1 0 0 1 1 1 0 NMD3 family DUF35_N PF12172.3 gi|385775444|ref|YP_005648012.1| - 8.5e-10 38.2 0.1 1.7e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|385775444|ref|YP_005648012.1| - 0.0076 16.4 0.0 0.017 15.3 0.0 1.6 2 0 0 2 2 2 1 DUF35 OB-fold domain DZR PF12773.2 gi|385775444|ref|YP_005648012.1| - 0.039 13.7 0.4 0.072 12.9 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Tetraspannin PF00335.15 gi|385775444|ref|YP_005648012.1| - 0.11 11.7 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Tetraspanin family zf-ribbon_3 PF13248.1 gi|385775444|ref|YP_005648012.1| - 0.14 11.3 3.3 0.28 10.4 2.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain gp45-slide_C PF09116.5 gi|385775448|ref|YP_005648016.1| - 0.087 12.8 0.0 0.099 12.6 0.0 1.2 1 0 0 1 1 1 0 gp45 sliding clamp, C terminal TPP_enzyme_C PF02775.16 gi|385775449|ref|YP_005648017.1| - 3e-22 78.8 0.0 6.7e-22 77.6 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|385775449|ref|YP_005648017.1| - 5.4e-14 52.2 0.0 3.4e-13 49.6 0.0 1.9 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|385775449|ref|YP_005648017.1| - 5.3e-10 38.4 14.5 3.8e-07 29.4 3.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385775449|ref|YP_005648017.1| - 5.2e-09 36.3 21.8 3.7e-06 27.2 8.0 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385775449|ref|YP_005648017.1| - 6.2e-09 35.5 11.6 1.3e-08 34.5 8.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385775449|ref|YP_005648017.1| - 8.3e-09 34.8 14.1 2.4e-05 23.9 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Transketolase_C PF02780.15 gi|385775449|ref|YP_005648017.1| - 1.5e-07 31.4 0.1 1.1e-05 25.3 0.0 2.9 3 0 0 3 3 3 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|385775449|ref|YP_005648017.1| - 1.7e-07 30.8 0.2 8.7e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_6 PF12837.2 gi|385775449|ref|YP_005648017.1| - 7.2e-06 25.6 20.3 0.00016 21.4 3.2 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385775449|ref|YP_005648017.1| - 2.4e-05 24.5 12.7 5.8e-05 23.2 8.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385775449|ref|YP_005648017.1| - 4.2e-05 23.3 11.1 0.00035 20.3 7.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385775449|ref|YP_005648017.1| - 8e-05 22.5 9.0 0.00027 20.9 6.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385775449|ref|YP_005648017.1| - 0.00011 22.4 4.4 0.018 15.3 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385775449|ref|YP_005648017.1| - 0.00013 22.6 6.6 0.0012 19.5 0.7 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain DXP_synthase_N PF13292.1 gi|385775449|ref|YP_005648017.1| - 0.0024 16.8 1.2 0.054 12.4 0.3 2.5 2 1 1 3 3 3 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_3 PF12798.2 gi|385775449|ref|YP_005648017.1| - 0.012 16.1 6.6 0.012 16.1 4.6 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385775449|ref|YP_005648017.1| - 0.013 15.7 3.3 0.013 15.7 2.3 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385775449|ref|YP_005648017.1| - 0.017 15.6 10.8 0.042 14.4 1.3 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|385775449|ref|YP_005648017.1| - 0.044 14.1 10.8 0.39 11.1 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|385775449|ref|YP_005648017.1| - 0.052 13.9 12.2 18 5.8 8.5 2.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.13 gi|385775450|ref|YP_005648018.1| - 1.9e-29 102.8 0.8 2.4e-29 102.4 0.6 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AMP-binding PF00501.23 gi|385775451|ref|YP_005648019.1| - 5.9e-77 258.8 0.0 7.5e-77 258.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385775451|ref|YP_005648019.1| - 1.7e-18 67.3 0.1 3.2e-18 66.4 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AhpC-TSA PF00578.16 gi|385775452|ref|YP_005648020.1| - 1e-34 118.8 0.0 1.3e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385775452|ref|YP_005648020.1| - 4.4e-22 78.2 0.0 5e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|385775452|ref|YP_005648020.1| - 0.0014 18.1 0.0 0.0017 17.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|385775452|ref|YP_005648020.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF4174 PF13778.1 gi|385775452|ref|YP_005648020.1| - 0.037 14.1 0.0 0.053 13.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4174) Lactamase_B PF00753.22 gi|385775453|ref|YP_005648021.1| - 2e-08 34.1 0.0 2.8e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Prominin PF05478.6 gi|385775455|ref|YP_005648023.1| - 0.12 9.9 0.1 0.15 9.5 0.0 1.1 1 0 0 1 1 1 0 Prominin Sigma_reg_N PF13800.1 gi|385775455|ref|YP_005648023.1| - 0.23 11.5 3.1 0.24 11.4 1.0 1.9 2 0 0 2 2 2 0 Sigma factor regulator N-terminal HEPN PF05168.9 gi|385775458|ref|YP_005648026.1| - 6.2e-13 48.6 1.0 1.1e-12 47.8 0.7 1.4 1 0 0 1 1 1 1 HEPN domain HTH_34 PF13601.1 gi|385775459|ref|YP_005648027.1| - 8.3e-14 51.3 0.1 1.2e-13 50.9 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385775459|ref|YP_005648027.1| - 1.2e-07 31.2 0.1 1.9e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|385775459|ref|YP_005648027.1| - 2.6e-06 27.1 0.0 3.6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|385775459|ref|YP_005648027.1| - 6.9e-06 25.6 0.1 1.2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF2513 PF10711.4 gi|385775459|ref|YP_005648027.1| - 3.4e-05 23.8 0.1 4.4e-05 23.4 0.0 1.2 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) TrmB PF01978.14 gi|385775459|ref|YP_005648027.1| - 0.00093 18.8 0.0 0.0017 17.9 0.0 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|385775459|ref|YP_005648027.1| - 0.002 18.4 0.0 0.004 17.4 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|385775459|ref|YP_005648027.1| - 0.0039 16.7 0.1 0.0053 16.3 0.1 1.3 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|385775459|ref|YP_005648027.1| - 0.0051 16.3 0.0 0.0079 15.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|385775459|ref|YP_005648027.1| - 0.0059 16.2 0.0 0.0083 15.7 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|385775459|ref|YP_005648027.1| - 0.0086 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Sulfolobus_pRN PF05584.6 gi|385775459|ref|YP_005648027.1| - 0.0094 15.8 0.1 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein Rrf2 PF02082.15 gi|385775459|ref|YP_005648027.1| - 0.028 14.5 0.1 0.042 13.9 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|385775459|ref|YP_005648027.1| - 0.042 13.2 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|385775459|ref|YP_005648027.1| - 0.05 13.4 0.9 0.11 12.3 0.6 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix MotA_activ PF09114.5 gi|385775459|ref|YP_005648027.1| - 0.056 13.1 0.2 0.089 12.5 0.1 1.4 1 1 0 1 1 1 0 Transcription factor MotA, activation domain DUF3116 PF11313.3 gi|385775459|ref|YP_005648027.1| - 0.11 12.1 0.6 2.6 7.6 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3116) ABC_tran PF00005.22 gi|385775461|ref|YP_005648029.1| - 3.9e-14 53.0 0.0 6.8e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775461|ref|YP_005648029.1| - 7.3e-12 45.8 2.4 9.1e-10 38.9 1.3 2.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385775461|ref|YP_005648029.1| - 6.3e-08 32.1 0.1 0.011 15.0 0.0 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385775461|ref|YP_005648029.1| - 2.3e-07 31.3 4.3 4.4e-07 30.4 2.9 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775461|ref|YP_005648029.1| - 3.6e-06 26.4 0.1 8.8e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|385775461|ref|YP_005648029.1| - 0.00013 21.1 1.7 0.17 10.8 0.2 2.3 1 1 1 2 2 2 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|385775461|ref|YP_005648029.1| - 0.00026 20.7 0.2 0.0004 20.1 0.2 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|385775461|ref|YP_005648029.1| - 0.00074 19.7 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|385775461|ref|YP_005648029.1| - 0.0031 17.3 0.1 0.0059 16.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385775461|ref|YP_005648029.1| - 0.0037 17.1 0.0 0.026 14.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385775461|ref|YP_005648029.1| - 0.0062 16.5 0.1 0.0092 15.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|385775461|ref|YP_005648029.1| - 0.0071 16.2 0.0 0.031 14.2 0.0 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.3 gi|385775461|ref|YP_005648029.1| - 0.0087 13.4 0.1 0.013 12.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) MobB PF03205.9 gi|385775461|ref|YP_005648029.1| - 0.012 15.2 0.1 0.027 14.1 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|385775461|ref|YP_005648029.1| - 0.013 15.2 0.2 0.025 14.2 0.1 1.5 1 0 0 1 1 1 0 NTPase AAA_17 PF13207.1 gi|385775461|ref|YP_005648029.1| - 0.018 15.8 0.2 0.041 14.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|385775461|ref|YP_005648029.1| - 0.028 13.9 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|385775461|ref|YP_005648029.1| - 0.028 14.7 0.9 0.11 12.8 0.6 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385775461|ref|YP_005648029.1| - 0.035 13.5 1.1 0.1 12.0 0.5 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|385775461|ref|YP_005648029.1| - 0.038 12.8 0.1 0.059 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|385775461|ref|YP_005648029.1| - 0.044 12.8 0.0 0.065 12.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF258 PF03193.11 gi|385775461|ref|YP_005648029.1| - 0.044 12.9 0.0 0.063 12.4 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|385775461|ref|YP_005648029.1| - 0.045 13.1 0.2 0.091 12.1 0.1 1.8 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|385775461|ref|YP_005648029.1| - 0.081 12.6 0.1 0.18 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|385775461|ref|YP_005648029.1| - 0.087 13.3 0.0 0.21 12.1 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein AAA_13 PF13166.1 gi|385775461|ref|YP_005648029.1| - 0.096 11.1 2.4 0.17 10.3 0.3 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|385775461|ref|YP_005648029.1| - 0.1 12.1 0.5 0.18 11.3 0.4 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|385775461|ref|YP_005648029.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|385775461|ref|YP_005648029.1| - 0.11 12.1 0.2 0.34 10.5 0.2 1.7 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.1 gi|385775461|ref|YP_005648029.1| - 0.12 12.4 0.3 0.36 10.9 0.2 1.8 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385775461|ref|YP_005648029.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain ABC2_membrane_4 PF12730.2 gi|385775462|ref|YP_005648030.1| - 1.1 8.4 47.0 1.4 8.0 32.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein OrfB_IS605 PF01385.14 gi|385775463|ref|YP_005648031.1| - 1.9e-38 132.1 6.1 3.8e-38 131.1 4.3 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775463|ref|YP_005648031.1| - 1e-27 95.5 0.3 2.9e-27 94.1 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385775463|ref|YP_005648031.1| - 2.3e-08 33.2 1.3 2.8e-08 32.9 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|385775463|ref|YP_005648031.1| - 0.029 13.6 0.7 5.2 6.4 0.0 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|385775463|ref|YP_005648031.1| - 0.083 12.4 1.1 14 5.3 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF3543 PF12063.3 gi|385775463|ref|YP_005648031.1| - 0.084 12.0 4.7 0.61 9.2 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3543) DZR PF12773.2 gi|385775463|ref|YP_005648031.1| - 0.094 12.5 0.2 0.17 11.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|385775463|ref|YP_005648031.1| - 0.12 12.5 0.4 0.12 12.5 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|385775463|ref|YP_005648031.1| - 0.16 11.1 3.1 5 6.4 3.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Y1_Tnp PF01797.11 gi|385775464|ref|YP_005648032.1| - 1.8e-38 131.1 2.2 2e-38 130.9 1.5 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF1638 PF07796.6 gi|385775464|ref|YP_005648032.1| - 0.08 12.5 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) FBP PF07299.6 gi|385775464|ref|YP_005648032.1| - 0.12 11.7 0.7 0.17 11.2 0.5 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) CoA_transf_3 PF02515.12 gi|385775465|ref|YP_005648033.1| - 4.9e-35 120.5 0.0 6e-35 120.2 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III AMP-binding PF00501.23 gi|385775466|ref|YP_005648034.1| - 1.4e-82 277.3 0.0 1.7e-82 277.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385775466|ref|YP_005648034.1| - 5.5e-21 75.3 0.0 1.7e-20 73.7 0.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.11 gi|385775467|ref|YP_005648035.1| - 4.1e-29 101.4 47.9 4.1e-29 101.4 33.2 1.9 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775467|ref|YP_005648035.1| - 7.8e-20 70.8 41.6 1e-17 63.8 9.9 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter Malate_synthase PF01274.17 gi|385775468|ref|YP_005648036.1| - 2.8e-42 144.4 0.0 4.7e-39 133.7 0.0 2.2 2 0 0 2 2 2 2 Malate synthase ICL PF00463.16 gi|385775469|ref|YP_005648037.1| - 3.8e-148 493.9 0.3 1.1e-80 271.3 0.0 2.0 1 1 1 2 2 2 2 Isocitrate lyase family PEP_mutase PF13714.1 gi|385775469|ref|YP_005648037.1| - 8.2e-17 61.2 0.0 1.7e-16 60.2 0.0 1.5 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Cation_ATPase_N PF00690.21 gi|385775470|ref|YP_005648038.1| - 0.12 11.8 0.1 0.31 10.5 0.0 1.8 1 1 1 2 2 2 0 Cation transporter/ATPase, N-terminus Ribosomal_L17 PF01196.14 gi|385775470|ref|YP_005648038.1| - 0.13 12.8 0.1 0.15 12.6 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L17 PIN PF01850.16 gi|385775471|ref|YP_005648039.1| - 2.5e-18 66.5 2.7 3.1e-18 66.2 1.9 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|385775471|ref|YP_005648039.1| - 0.051 14.2 0.4 0.063 13.9 0.3 1.3 1 1 0 1 1 1 0 PIN domain CorA PF01544.13 gi|385775472|ref|YP_005648040.1| - 1.9e-24 86.2 6.4 2.3e-24 85.9 4.4 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein SDF PF00375.13 gi|385775472|ref|YP_005648040.1| - 0.086 11.5 2.6 0.12 11.1 1.8 1.1 1 0 0 1 1 1 0 Sodium:dicarboxylate symporter family DUF3923 PF13061.1 gi|385775472|ref|YP_005648040.1| - 0.13 12.1 2.8 0.29 10.9 1.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3923) dTDP_sugar_isom PF00908.12 gi|385775473|ref|YP_005648041.1| - 3.2e-55 186.1 0.0 3.9e-55 185.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|385775473|ref|YP_005648041.1| - 0.011 15.2 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 WxcM-like, C-terminal Peptidase_M17 PF00883.16 gi|385775473|ref|YP_005648041.1| - 0.025 13.4 0.0 0.034 13.0 0.0 1.1 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain RHH_1 PF01402.16 gi|385775474|ref|YP_005648042.1| - 0.0027 17.5 1.1 0.0051 16.6 0.2 1.8 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RVP PF00077.15 gi|385775475|ref|YP_005648043.1| - 0.00064 19.5 0.0 0.0015 18.4 0.0 1.5 1 1 0 1 1 1 1 Retroviral aspartyl protease Asp_protease_2 PF13650.1 gi|385775475|ref|YP_005648043.1| - 0.11 12.9 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 Aspartyl protease ELFV_dehydrog PF00208.16 gi|385775476|ref|YP_005648044.1| - 4.4e-69 232.7 3.8 1.1e-68 231.4 2.8 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|385775476|ref|YP_005648044.1| - 2.8e-46 156.3 0.0 4.7e-46 155.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|385775476|ref|YP_005648044.1| - 0.0011 18.1 0.4 0.0019 17.3 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|385775476|ref|YP_005648044.1| - 0.046 13.5 0.3 0.13 12.0 0.2 1.8 1 0 0 1 1 1 0 ThiF family AdoHcyase_NAD PF00670.16 gi|385775476|ref|YP_005648044.1| - 0.09 12.6 1.4 0.24 11.2 1.0 1.8 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|385775476|ref|YP_005648044.1| - 0.25 10.9 2.8 0.5 9.9 0.2 2.4 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain INTS2 PF14750.1 gi|385775477|ref|YP_005648045.1| - 0.047 11.2 0.0 0.063 10.7 0.0 1.1 1 0 0 1 1 1 0 Integrator complex subunit 2 LRAT PF04970.8 gi|385775477|ref|YP_005648045.1| - 0.12 12.2 0.1 0.21 11.5 0.1 1.4 1 1 0 1 1 1 0 Lecithin retinol acyltransferase HTH_27 PF13463.1 gi|385775478|ref|YP_005648046.1| - 1.7e-05 25.0 0.1 4.2e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|385775478|ref|YP_005648046.1| - 1.7e-05 24.5 2.3 5.8e-05 22.8 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|385775478|ref|YP_005648046.1| - 8e-05 22.5 0.2 0.00038 20.4 0.1 2.1 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|385775478|ref|YP_005648046.1| - 0.00067 19.2 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.1 gi|385775478|ref|YP_005648046.1| - 0.0023 18.0 0.1 0.016 15.3 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|385775478|ref|YP_005648046.1| - 0.0031 17.0 0.2 0.017 14.7 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_24 PF13412.1 gi|385775478|ref|YP_005648046.1| - 0.0045 16.3 0.0 0.0077 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RPA_C PF08784.6 gi|385775478|ref|YP_005648046.1| - 0.018 15.4 0.0 2.3 8.6 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal Mrr_N PF14338.1 gi|385775478|ref|YP_005648046.1| - 0.033 14.2 0.1 0.091 12.8 0.0 1.7 1 1 0 1 1 1 0 Mrr N-terminal domain FeoC PF09012.5 gi|385775478|ref|YP_005648046.1| - 0.041 13.6 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Crp_2 PF13545.1 gi|385775478|ref|YP_005648046.1| - 0.042 13.6 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain PCI PF01399.22 gi|385775478|ref|YP_005648046.1| - 0.053 13.8 0.0 6.8 7.0 0.0 2.1 1 1 1 2 2 2 0 PCI domain Phage_rep_O PF04492.8 gi|385775478|ref|YP_005648046.1| - 0.069 13.3 0.0 1.9 8.7 0.0 2.3 1 1 1 2 2 2 0 Bacteriophage replication protein O MarR PF01047.17 gi|385775478|ref|YP_005648046.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Protein_K PF12283.3 gi|385775478|ref|YP_005648046.1| - 0.21 11.4 0.9 0.55 10.1 0.6 1.7 1 0 0 1 1 1 0 Bacteriophage protein K OrfB_Zn_ribbon PF07282.6 gi|385775479|ref|YP_005648047.1| - 2.9e-22 78.0 0.3 3.5e-22 77.8 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_4 PF14570.1 gi|385775479|ref|YP_005648047.1| - 0.0055 16.2 1.3 0.0082 15.6 0.9 1.3 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain zinc_ribbon_2 PF13240.1 gi|385775479|ref|YP_005648047.1| - 0.046 13.2 1.3 0.27 10.7 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.17 gi|385775479|ref|YP_005648047.1| - 0.067 12.9 0.9 0.087 12.5 0.6 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.1 gi|385775479|ref|YP_005648047.1| - 0.068 12.3 1.2 0.26 10.5 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|385775479|ref|YP_005648047.1| - 0.078 12.7 0.3 0.16 11.7 0.2 1.4 1 0 0 1 1 1 0 YhfH-like protein RNA_POL_M_15KD PF02150.11 gi|385775479|ref|YP_005648047.1| - 0.29 10.8 2.4 0.48 10.1 1.6 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit IlvN PF07991.7 gi|385775480|ref|YP_005648048.1| - 3.3e-60 202.2 0.6 4.6e-60 201.7 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|385775480|ref|YP_005648048.1| - 2.6e-12 46.8 0.0 4.3e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|385775480|ref|YP_005648048.1| - 7.6e-07 29.4 0.1 1.5e-06 28.4 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|385775480|ref|YP_005648048.1| - 8e-07 29.0 0.1 1.3e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385775480|ref|YP_005648048.1| - 1.4e-06 27.5 0.0 2.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|385775480|ref|YP_005648048.1| - 3.8e-05 23.5 0.1 6.9e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|385775480|ref|YP_005648048.1| - 0.00062 19.5 0.1 1.3 8.7 0.1 2.8 2 1 1 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding PF02629.14 gi|385775480|ref|YP_005648048.1| - 0.0086 16.5 0.4 0.028 14.9 0.1 1.9 2 0 0 2 2 2 1 CoA binding domain Shikimate_DH PF01488.15 gi|385775480|ref|YP_005648048.1| - 0.062 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiC PF01964.13 gi|385775481|ref|YP_005648049.1| - 1.1e-05 24.1 0.1 1.2e-05 24.0 0.1 1.0 1 0 0 1 1 1 1 ThiC family ThiC PF01964.13 gi|385775482|ref|YP_005648050.1| - 2.2e-10 39.6 0.2 2.2e-10 39.6 0.2 1.0 1 0 0 1 1 1 1 ThiC family PaREP1 PF05942.6 gi|385775483|ref|YP_005648051.1| - 1.1e-25 89.7 5.2 1.3e-25 89.4 3.6 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|385775483|ref|YP_005648051.1| - 1.6e-05 24.5 2.5 0.00089 18.9 0.0 2.7 3 1 0 3 3 3 1 Protein of unknown function (DUF357) HEPN PF05168.9 gi|385775483|ref|YP_005648051.1| - 0.01 15.7 4.5 0.018 14.9 3.1 1.6 1 1 0 1 1 1 0 HEPN domain DUF4398 PF14346.1 gi|385775483|ref|YP_005648051.1| - 0.091 12.8 6.6 0.22 11.5 4.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) Lipoprotein_6 PF01441.14 gi|385775483|ref|YP_005648051.1| - 0.2 11.4 5.0 0.16 11.8 2.3 1.7 1 1 0 1 1 1 0 Lipoprotein TPR_11 PF13414.1 gi|385775483|ref|YP_005648051.1| - 0.22 11.1 2.3 0.5 10.0 1.4 1.8 1 1 0 1 1 1 0 TPR repeat Prefoldin PF02996.12 gi|385775483|ref|YP_005648051.1| - 1.7 8.2 6.8 0.3 10.7 1.0 2.2 2 1 1 3 3 3 0 Prefoldin subunit Zn_peptidase PF04228.8 gi|385775485|ref|YP_005648053.1| - 0.01 15.0 0.1 0.011 14.9 0.0 1.0 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase DUF4097 PF13349.1 gi|385775485|ref|YP_005648053.1| - 0.032 13.7 0.8 0.038 13.5 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) DUF1314 PF07013.6 gi|385775485|ref|YP_005648053.1| - 0.066 12.6 0.5 0.071 12.4 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1314) SSP160 PF06933.6 gi|385775485|ref|YP_005648053.1| - 0.077 10.9 18.5 0.073 11.0 12.8 1.0 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF2946 PF11162.3 gi|385775485|ref|YP_005648053.1| - 0.12 12.6 1.1 0.13 12.5 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) SoxE PF06525.6 gi|385775485|ref|YP_005648053.1| - 0.13 11.5 7.8 0.18 11.0 5.4 1.3 1 0 0 1 1 1 0 Sulfocyanin (SoxE) DUF1183 PF06682.7 gi|385775485|ref|YP_005648053.1| - 0.65 9.5 7.7 0.7 9.4 5.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1183) Phosphoprotein PF00922.12 gi|385775485|ref|YP_005648053.1| - 0.83 8.8 9.4 0.92 8.6 6.5 1.0 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein DUF4614 PF15391.1 gi|385775485|ref|YP_005648053.1| - 1.6 8.4 10.5 1.8 8.2 7.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4614) Sporozoite_P67 PF05642.6 gi|385775485|ref|YP_005648053.1| - 5 4.8 14.0 5.5 4.7 9.7 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen PHO4 PF01384.15 gi|385775486|ref|YP_005648054.1| - 1.1 7.8 4.4 1.2 7.6 3.1 1.1 1 0 0 1 1 1 0 Phosphate transporter family Tenui_PVC2 PF06656.6 gi|385775486|ref|YP_005648054.1| - 9.3 3.9 7.1 10 3.7 4.9 1.0 1 0 0 1 1 1 0 Tenuivirus PVC2 protein DUF911 PF06023.7 gi|385775487|ref|YP_005648055.1| - 8.2e-101 337.0 0.0 1.1e-100 336.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) PDDEXK_1 PF12705.2 gi|385775487|ref|YP_005648055.1| - 2.9e-06 26.8 0.0 5e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.11 gi|385775488|ref|YP_005648056.1| - 2.2e-50 171.3 0.0 4e-50 170.4 0.0 1.4 1 1 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|385775489|ref|YP_005648057.1| - 5.1e-18 64.9 0.2 5.7e-18 64.8 0.2 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.12 gi|385775490|ref|YP_005648058.1| - 2.8e-19 69.6 0.0 3.2e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|385775490|ref|YP_005648058.1| - 2.7e-10 40.0 0.0 1.4e-07 31.2 0.1 2.2 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily HTH_Mga PF08280.6 gi|385775491|ref|YP_005648059.1| - 4e-05 23.2 1.2 4e-05 23.2 0.9 2.3 2 1 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.7 gi|385775491|ref|YP_005648059.1| - 9.2e-05 22.0 0.1 0.0003 20.3 0.1 1.9 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|385775491|ref|YP_005648059.1| - 0.00018 20.8 0.2 0.00043 19.6 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|385775491|ref|YP_005648059.1| - 0.00063 19.8 0.3 0.0013 18.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|385775491|ref|YP_005648059.1| - 0.032 13.6 0.1 0.087 12.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Mga PF05043.8 gi|385775491|ref|YP_005648059.1| - 0.033 14.4 2.6 0.044 14.0 0.9 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_5 PF01022.15 gi|385775491|ref|YP_005648059.1| - 0.043 13.4 0.1 0.1 12.2 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|385775491|ref|YP_005648059.1| - 0.053 13.8 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain U5_2-snRNA_bdg PF10597.4 gi|385775491|ref|YP_005648059.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 CAP_C PF08603.6 gi|385775491|ref|YP_005648059.1| - 0.073 12.4 0.0 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) C terminal HTH_DeoR PF08220.7 gi|385775491|ref|YP_005648059.1| - 0.077 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|385775491|ref|YP_005648059.1| - 0.11 12.2 0.5 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF1887 PF09002.6 gi|385775492|ref|YP_005648060.1| - 2.5e-06 26.1 0.1 2.7e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) HTH_24 PF13412.1 gi|385775492|ref|YP_005648060.1| - 6.5e-05 22.2 0.3 0.00011 21.4 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|385775492|ref|YP_005648060.1| - 0.0034 17.1 1.2 0.021 14.6 0.5 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|385775492|ref|YP_005648060.1| - 0.008 16.0 0.2 0.019 14.8 0.1 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF3227 PF11537.3 gi|385775492|ref|YP_005648060.1| - 0.093 12.8 0.2 1.2 9.2 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3227) Cas_Csa5 PF09702.5 gi|385775493|ref|YP_005648061.1| - 1.2e-48 163.5 0.2 2.2e-48 162.6 0.2 1.3 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_Csa5) Pox_C7_F8A PF03287.9 gi|385775493|ref|YP_005648061.1| - 0.074 12.7 0.3 0.091 12.4 0.2 1.2 1 0 0 1 1 1 0 Poxvirus C7/F8A protein DevR PF01905.11 gi|385775494|ref|YP_005648062.1| - 1.2e-76 257.0 0.0 1.5e-76 256.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.5 gi|385775495|ref|YP_005648063.1| - 3.9e-19 69.1 0.0 4.6e-19 68.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|385775496|ref|YP_005648064.1| - 1.3e-14 54.0 0.1 2.6e-13 49.7 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385775496|ref|YP_005648064.1| - 1.1e-07 31.6 0.0 2.8e-07 30.3 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385775496|ref|YP_005648064.1| - 9.6e-06 25.5 0.0 3.5e-05 23.7 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|385775496|ref|YP_005648064.1| - 0.012 15.2 0.0 0.042 13.5 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain RuvB_N PF05496.7 gi|385775496|ref|YP_005648064.1| - 0.02 13.9 0.0 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|385775496|ref|YP_005648064.1| - 0.048 13.7 0.0 0.59 10.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain DUF2276 PF10040.4 gi|385775499|ref|YP_005648067.1| - 1.1e-23 83.7 0.0 1.9e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) OrfB_IS605 PF01385.14 gi|385775501|ref|YP_005648069.1| - 6.2e-37 127.1 7.6 1.3e-36 126.1 5.2 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775501|ref|YP_005648069.1| - 3.4e-28 97.1 0.3 9.3e-28 95.6 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385775501|ref|YP_005648069.1| - 1.2e-08 34.1 0.2 2.8e-08 32.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|385775501|ref|YP_005648069.1| - 0.024 13.9 1.1 4.5 6.6 0.0 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|385775501|ref|YP_005648069.1| - 0.065 12.7 1.9 7.5 6.1 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|385775501|ref|YP_005648069.1| - 0.066 13.0 0.3 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|385775501|ref|YP_005648069.1| - 0.12 12.5 0.4 0.12 12.5 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|385775501|ref|YP_005648069.1| - 0.23 10.7 4.0 5.4 6.3 0.2 2.2 1 1 2 3 3 3 0 zinc-ribbon domain Y1_Tnp PF01797.11 gi|385775502|ref|YP_005648070.1| - 1.8e-38 131.1 2.2 2e-38 130.9 1.5 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF1638 PF07796.6 gi|385775502|ref|YP_005648070.1| - 0.08 12.5 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) FBP PF07299.6 gi|385775502|ref|YP_005648070.1| - 0.12 11.7 0.7 0.17 11.2 0.5 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) PIN PF01850.16 gi|385775503|ref|YP_005648071.1| - 1.1e-16 61.1 0.1 1.3e-16 61.0 0.1 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|385775504|ref|YP_005648072.1| - 9.3e-14 50.7 2.5 1.3e-13 50.3 1.5 1.5 1 1 0 1 1 1 1 Antidote-toxin recognition MazE AbrB-like PF14250.1 gi|385775504|ref|YP_005648072.1| - 0.084 12.7 0.1 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 AbrB-like transcriptional regulator AAA_14 PF13173.1 gi|385775505|ref|YP_005648073.1| - 5.6e-30 103.8 0.2 1.3e-29 102.6 0.2 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|385775505|ref|YP_005648073.1| - 1.5e-08 34.6 0.2 3e-08 33.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_17 PF13207.1 gi|385775505|ref|YP_005648073.1| - 0.00063 20.5 1.4 0.0028 18.4 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|385775505|ref|YP_005648073.1| - 0.065 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|385775505|ref|YP_005648073.1| - 0.12 12.5 0.1 0.32 11.1 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) LigB PF02900.13 gi|385775506|ref|YP_005648074.1| - 7.8e-12 44.7 0.0 9.2e-12 44.5 0.0 1.1 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase DUF1385 PF07136.6 gi|385775508|ref|YP_005648076.1| - 1.6 7.7 6.9 1.4 7.9 2.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1385) SNN_transmemb PF09049.5 gi|385775508|ref|YP_005648076.1| - 4.2 7.1 6.9 0.31 10.7 0.5 2.2 2 0 0 2 2 2 0 Stannin transmembrane DUF3112 PF11309.3 gi|385775508|ref|YP_005648076.1| - 7.9 6.2 12.2 1.4 8.6 1.6 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3112) Band_7 PF01145.20 gi|385775509|ref|YP_005648077.1| - 2.9e-22 79.4 0.8 4.5e-22 78.8 0.6 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|385775509|ref|YP_005648077.1| - 1e-12 48.0 0.1 2.2e-12 46.9 0.1 1.5 1 1 0 1 1 1 1 SPFH domain-Band 7 family HAUS2 PF15003.1 gi|385775510|ref|YP_005648078.1| - 0.11 11.6 0.1 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 MFS_1 PF07690.11 gi|385775511|ref|YP_005648079.1| - 1.4e-28 99.5 46.2 1.4e-28 99.5 32.0 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|385775511|ref|YP_005648079.1| - 0.01 14.0 7.8 0.012 13.8 0.1 2.9 2 1 0 3 3 3 0 Transmembrane secretion effector DUF1228 PF06779.9 gi|385775511|ref|YP_005648079.1| - 0.011 15.7 7.4 0.47 10.5 0.9 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1228) Flp_Fap PF04964.9 gi|385775512|ref|YP_005648080.1| - 0.43 10.2 2.3 0.98 9.0 1.6 1.6 1 0 0 1 1 1 0 Flp/Fap pilin component DUF2659 PF10858.3 gi|385775512|ref|YP_005648080.1| - 1.3 8.4 7.6 0.38 10.1 3.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2659) Glycos_transf_2 PF00535.21 gi|385775514|ref|YP_005648082.1| - 7.4e-20 71.3 0.0 1.2e-19 70.5 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385775514|ref|YP_005648082.1| - 2.6e-07 30.6 0.0 5.6e-07 29.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|385775514|ref|YP_005648082.1| - 3.2e-06 26.4 0.3 1.2e-05 24.5 0.2 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 HEAT_2 PF13646.1 gi|385775515|ref|YP_005648083.1| - 0.00045 20.4 0.0 0.033 14.4 0.0 2.4 2 1 1 3 3 3 2 HEAT repeats HEAT PF02985.17 gi|385775515|ref|YP_005648083.1| - 0.0062 16.5 1.1 7.9 6.8 0.0 3.6 4 0 0 4 4 4 1 HEAT repeat Mitovir_RNA_pol PF05919.6 gi|385775515|ref|YP_005648083.1| - 0.02 13.8 0.1 0.025 13.5 0.0 1.0 1 0 0 1 1 1 0 Mitovirus RNA-dependent RNA polymerase Peptidase_M20 PF01546.23 gi|385775516|ref|YP_005648084.1| - 1.2e-30 106.4 0.1 1.5e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385775516|ref|YP_005648084.1| - 1.9e-13 50.1 0.0 8.6e-13 48.0 0.0 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain Glyco_hydro_12 PF01670.11 gi|385775518|ref|YP_005648086.1| - 1.4e-15 57.4 3.8 1.4e-15 57.4 2.6 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 12 TadE PF07811.7 gi|385775518|ref|YP_005648086.1| - 0.12 12.2 0.6 0.24 11.3 0.4 1.5 1 0 0 1 1 1 0 TadE-like protein DUF2393 PF09624.5 gi|385775518|ref|YP_005648086.1| - 1.1 8.7 4.4 2.2 7.8 3.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) DUF608 PF04685.8 gi|385775519|ref|YP_005648087.1| - 4.5e-80 269.1 0.0 7e-80 268.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|385775519|ref|YP_005648087.1| - 4.1e-61 206.7 0.1 5.7e-61 206.2 0.1 1.2 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal Bac_rhamnosid PF05592.6 gi|385775519|ref|YP_005648087.1| - 2.8e-06 25.8 0.0 0.0012 17.2 0.0 2.1 1 1 0 2 2 2 2 Bacterial alpha-L-rhamnosidase Glyco_hydro_52 PF03512.8 gi|385775519|ref|YP_005648087.1| - 0.044 12.3 0.0 0.07 11.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 52 GDE_C PF06202.9 gi|385775519|ref|YP_005648087.1| - 0.051 12.2 0.3 0.6 8.7 0.2 2.5 1 1 0 1 1 1 0 Amylo-alpha-1,6-glucosidase DUF1028 PF06267.7 gi|385775521|ref|YP_005648089.1| - 6.5e-70 234.4 0.0 7.9e-70 234.1 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) YTV PF07639.6 gi|385775522|ref|YP_005648090.1| - 0.048 13.3 1.6 0.071 12.8 1.1 1.3 1 0 0 1 1 1 0 YTV Plasmid_stabil PF05016.9 gi|385775523|ref|YP_005648091.1| - 1.4e-06 28.5 0.0 1.9e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein IBP39 PF11422.3 gi|385775523|ref|YP_005648091.1| - 0.063 12.7 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 Initiator binding protein 39 kDa DUF1286 PF06939.6 gi|385775524|ref|YP_005648092.1| - 5.9e-49 164.9 8.6 5.9e-49 164.9 6.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) DUF3084 PF11283.3 gi|385775524|ref|YP_005648092.1| - 0.23 11.3 1.7 0.36 10.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) DUF457 PF04307.9 gi|385775524|ref|YP_005648092.1| - 0.59 9.4 15.8 3.7 6.8 11.0 2.0 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) GlpM PF06942.7 gi|385775524|ref|YP_005648092.1| - 5.9 7.2 9.1 0.11 12.7 1.0 2.1 3 0 0 3 3 3 0 GlpM protein ABC_tran PF00005.22 gi|385775526|ref|YP_005648094.1| - 2.8e-29 102.1 0.0 9.1e-29 100.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385775526|ref|YP_005648094.1| - 2.2e-13 50.8 2.2 2.9e-06 27.4 0.0 2.5 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|385775526|ref|YP_005648094.1| - 6e-09 35.4 0.9 0.004 16.2 0.0 3.0 1 1 2 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|385775526|ref|YP_005648094.1| - 6.9e-05 22.2 0.0 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|385775526|ref|YP_005648094.1| - 0.00026 20.5 0.1 0.083 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|385775526|ref|YP_005648094.1| - 0.0016 18.6 0.9 0.016 15.4 0.5 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|385775526|ref|YP_005648094.1| - 0.0025 18.1 2.0 0.0062 16.8 1.4 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385775526|ref|YP_005648094.1| - 0.0026 16.9 0.0 0.0052 15.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|385775526|ref|YP_005648094.1| - 0.0028 17.3 0.1 0.0056 16.3 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|385775526|ref|YP_005648094.1| - 0.0077 15.9 0.0 0.02 14.6 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|385775526|ref|YP_005648094.1| - 0.0095 15.9 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|385775526|ref|YP_005648094.1| - 0.011 15.9 0.1 0.065 13.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|385775526|ref|YP_005648094.1| - 0.011 15.7 0.1 0.029 14.3 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|385775526|ref|YP_005648094.1| - 0.014 14.4 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|385775526|ref|YP_005648094.1| - 0.015 14.5 0.3 0.18 10.9 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|385775526|ref|YP_005648094.1| - 0.025 14.3 0.0 0.11 12.2 0.0 2.0 3 0 0 3 3 3 0 Part of AAA domain AAA_5 PF07728.9 gi|385775526|ref|YP_005648094.1| - 0.027 14.2 0.6 0.23 11.1 0.0 2.4 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|385775526|ref|YP_005648094.1| - 0.048 13.5 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|385775526|ref|YP_005648094.1| - 0.048 13.3 0.0 0.29 10.7 0.0 2.2 3 0 0 3 3 3 0 NACHT domain NTPase_1 PF03266.10 gi|385775526|ref|YP_005648094.1| - 0.05 13.3 1.9 3.2 7.4 0.0 2.8 3 0 0 3 3 3 0 NTPase AAA_17 PF13207.1 gi|385775526|ref|YP_005648094.1| - 0.064 14.0 3.0 0.57 11.0 0.2 2.5 1 1 1 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|385775526|ref|YP_005648094.1| - 0.07 12.6 0.0 0.084 12.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385775526|ref|YP_005648094.1| - 0.074 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|385775526|ref|YP_005648094.1| - 0.075 12.9 0.9 1.6 8.6 0.0 2.9 1 1 3 4 4 4 0 AAA domain AAA_30 PF13604.1 gi|385775526|ref|YP_005648094.1| - 0.086 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|385775526|ref|YP_005648094.1| - 0.086 12.2 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|385775526|ref|YP_005648094.1| - 0.086 13.3 0.0 0.29 11.6 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein DUF4162 PF13732.1 gi|385775526|ref|YP_005648094.1| - 0.11 12.9 0.6 0.28 11.7 0.1 2.0 2 0 0 2 2 1 0 Domain of unknown function (DUF4162) AAA_28 PF13521.1 gi|385775526|ref|YP_005648094.1| - 0.14 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|385775526|ref|YP_005648094.1| - 0.88 9.8 4.9 17 5.6 3.4 2.8 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|385775527|ref|YP_005648095.1| - 2.1e-13 49.7 30.9 5.2e-13 48.4 21.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|385775527|ref|YP_005648095.1| - 1.5e-11 43.9 36.6 2.1e-11 43.4 25.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|385775527|ref|YP_005648095.1| - 1.9e-06 27.1 33.1 1.9e-06 27.1 22.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|385775527|ref|YP_005648095.1| - 3.7 6.7 35.6 29 3.8 24.7 2.4 1 1 0 1 1 1 0 ABC-2 family transporter protein PIN_4 PF13638.1 gi|385775529|ref|YP_005648097.1| - 0.00037 20.5 0.1 0.00097 19.2 0.0 1.6 1 1 0 1 1 1 1 PIN domain AAA_10 PF12846.2 gi|385775529|ref|YP_005648097.1| - 0.09 12.1 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain DUF217 PF02697.9 gi|385775531|ref|YP_005648099.1| - 6.9e-21 74.2 2.7 7.8e-21 74.1 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF104 PF01954.11 gi|385775531|ref|YP_005648099.1| - 0.069 13.1 0.8 0.15 12.0 0.3 1.7 1 1 1 2 2 2 0 Protein of unknown function DUF104 PIN PF01850.16 gi|385775532|ref|YP_005648100.1| - 2.8e-11 43.8 0.1 3.6e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain OrfB_IS605 PF01385.14 gi|385775533|ref|YP_005648101.1| - 2.2e-27 95.9 6.6 2.8e-27 95.5 4.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775533|ref|YP_005648101.1| - 4.6e-24 83.8 0.1 9.4e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775533|ref|YP_005648101.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385775533|ref|YP_005648101.1| - 0.026 14.1 0.4 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385775533|ref|YP_005648101.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385775533|ref|YP_005648101.1| - 0.11 12.0 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385775533|ref|YP_005648101.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385775533|ref|YP_005648101.1| - 0.3 10.9 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385775533|ref|YP_005648101.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385775533|ref|YP_005648101.1| - 4.6 7.1 5.1 4.6 7.1 0.3 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Cas_APE2256 PF09651.5 gi|385775534|ref|YP_005648102.1| - 3.6e-36 123.8 0.6 6.7e-36 123.0 0.4 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DSPc PF00782.15 gi|385775534|ref|YP_005648102.1| - 0.0014 18.2 0.4 0.14 11.7 0.0 3.2 2 1 1 3 3 3 1 Dual specificity phosphatase, catalytic domain DUF3139 PF11337.3 gi|385775534|ref|YP_005648102.1| - 0.0034 17.6 3.6 0.016 15.4 0.7 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3139) Cas_Cas02710 PF09670.5 gi|385775534|ref|YP_005648102.1| - 0.012 14.2 0.0 0.021 13.4 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) DUF1040 PF06288.8 gi|385775534|ref|YP_005648102.1| - 0.045 13.9 0.1 0.14 12.4 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1040) DUF1680 PF07944.7 gi|385775534|ref|YP_005648102.1| - 0.079 11.2 0.2 0.56 8.4 0.0 2.0 2 0 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) RVP PF00077.15 gi|385775535|ref|YP_005648103.1| - 5.5e-05 23.0 0.0 6.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp_protease_2 PF13650.1 gi|385775535|ref|YP_005648103.1| - 0.052 14.0 0.0 0.06 13.8 0.0 1.2 1 0 0 1 1 1 0 Aspartyl protease AAA_23 PF13476.1 gi|385775536|ref|YP_005648104.1| - 1.9e-10 41.4 0.1 2.4e-10 41.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385775536|ref|YP_005648104.1| - 1.3e-09 37.6 0.4 1.6e-09 37.3 0.3 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|385775536|ref|YP_005648104.1| - 4.7e-07 30.0 0.2 5.4e-07 29.8 0.2 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385775536|ref|YP_005648104.1| - 1.4e-06 27.6 0.2 1.4e-06 27.6 0.1 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|385775536|ref|YP_005648104.1| - 0.00014 21.2 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|385775536|ref|YP_005648104.1| - 0.0037 15.8 0.0 0.004 15.7 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385775536|ref|YP_005648104.1| - 0.0047 17.0 0.0 0.0049 17.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|385775536|ref|YP_005648104.1| - 0.0078 16.5 0.0 0.01 16.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter DUF2813 PF11398.3 gi|385775536|ref|YP_005648104.1| - 0.0086 15.1 0.1 0.0086 15.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_33 PF13671.1 gi|385775536|ref|YP_005648104.1| - 0.023 14.5 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385775536|ref|YP_005648104.1| - 0.031 13.4 0.1 0.037 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|385775536|ref|YP_005648104.1| - 0.045 13.4 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|385775536|ref|YP_005648104.1| - 0.052 13.2 0.0 0.064 12.9 0.0 1.1 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|385775536|ref|YP_005648104.1| - 0.066 12.9 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|385775536|ref|YP_005648104.1| - 0.07 12.5 0.0 0.085 12.3 0.0 1.1 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|385775536|ref|YP_005648104.1| - 0.081 12.5 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|385775536|ref|YP_005648104.1| - 0.092 12.4 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|385775536|ref|YP_005648104.1| - 0.095 12.6 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|385775536|ref|YP_005648104.1| - 0.11 13.0 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|385775536|ref|YP_005648104.1| - 0.12 11.8 0.1 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PaREP1 PF05942.6 gi|385775540|ref|YP_005648108.1| - 3.7e-32 110.5 4.2 4.9e-32 110.2 2.9 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|385775540|ref|YP_005648108.1| - 0.00033 20.2 0.1 0.0012 18.5 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF357) Telomere_reg-2 PF10193.4 gi|385775540|ref|YP_005648108.1| - 0.024 14.8 1.2 0.061 13.5 0.2 2.0 2 0 0 2 2 2 0 Telomere length regulation protein PhosphMutase PF10143.4 gi|385775540|ref|YP_005648108.1| - 0.11 12.0 0.4 0.78 9.3 0.0 2.1 1 1 1 2 2 2 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase DUF2262 PF10020.4 gi|385775540|ref|YP_005648108.1| - 1.2 9.3 5.8 1.4 9.1 2.9 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2262) PIN PF01850.16 gi|385775541|ref|YP_005648109.1| - 6.2e-11 42.6 0.3 9.9e-11 42.0 0.2 1.3 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|385775541|ref|YP_005648109.1| - 0.054 13.6 0.8 0.068 13.2 0.5 1.1 1 0 0 1 1 1 0 PIN domain PIN_3 PF13470.1 gi|385775541|ref|YP_005648109.1| - 0.096 13.3 0.6 0.13 12.9 0.4 1.3 1 1 0 1 1 1 0 PIN domain Nitroreductase PF00881.19 gi|385775544|ref|YP_005648112.1| - 9.7e-22 77.5 0.0 1.3e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family YcaO PF02624.11 gi|385775545|ref|YP_005648113.1| - 7.4e-38 130.8 0.0 8.9e-38 130.5 0.0 1.1 1 0 0 1 1 1 1 YcaO-like family DUF1133 PF06576.6 gi|385775545|ref|YP_005648113.1| - 0.16 11.1 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1133) DUF1825 PF08855.5 gi|385775545|ref|YP_005648113.1| - 0.88 9.5 3.1 0.89 9.5 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1825) DUF257 PF03192.8 gi|385775546|ref|YP_005648114.1| - 0.04 13.2 1.8 0.067 12.4 1.2 1.4 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 PIG-F PF06699.6 gi|385775547|ref|YP_005648115.1| - 0.068 13.1 0.2 0.068 13.1 0.1 1.0 1 0 0 1 1 1 0 GPI biosynthesis protein family Pig-F DUF1428 PF07237.6 gi|385775547|ref|YP_005648115.1| - 0.12 12.3 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1428) Abhydrolase_9_N PF15420.1 gi|385775549|ref|YP_005648117.1| - 1.8 8.2 9.5 0.26 11.0 3.7 1.7 2 0 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus ABC_tran PF00005.22 gi|385775550|ref|YP_005648118.1| - 2.5e-21 76.4 0.1 4.3e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775550|ref|YP_005648118.1| - 1.1e-11 45.3 2.7 1.5e-06 28.4 0.4 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385775550|ref|YP_005648118.1| - 1.2e-11 44.2 1.4 2.4e-05 23.6 0.1 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385775550|ref|YP_005648118.1| - 2e-09 38.0 3.8 8.7e-09 35.9 2.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|385775550|ref|YP_005648118.1| - 2.6e-06 26.2 1.4 0.0006 18.4 0.1 2.2 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385775550|ref|YP_005648118.1| - 1.7e-05 24.2 0.0 2.8e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|385775550|ref|YP_005648118.1| - 3e-05 23.6 0.0 5.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|385775550|ref|YP_005648118.1| - 5.8e-05 23.1 0.0 6.8e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|385775550|ref|YP_005648118.1| - 7.4e-05 22.5 0.8 0.00011 21.9 0.5 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|385775550|ref|YP_005648118.1| - 0.00011 22.4 1.1 0.00068 19.8 0.7 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|385775550|ref|YP_005648118.1| - 0.00021 20.5 0.1 0.0003 20.0 0.0 1.4 2 0 0 2 2 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|385775550|ref|YP_005648118.1| - 0.00023 20.3 5.0 0.00023 20.3 3.5 2.0 1 1 1 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|385775550|ref|YP_005648118.1| - 0.00093 18.3 0.1 0.0019 17.3 0.0 1.5 2 0 0 2 2 1 1 Zeta toxin UPF0079 PF02367.12 gi|385775550|ref|YP_005648118.1| - 0.0016 18.0 0.1 0.21 11.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 SbcCD_C PF13558.1 gi|385775550|ref|YP_005648118.1| - 0.0019 18.0 0.0 0.025 14.5 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|385775550|ref|YP_005648118.1| - 0.0023 17.6 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|385775550|ref|YP_005648118.1| - 0.0024 16.8 0.3 0.0071 15.2 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|385775550|ref|YP_005648118.1| - 0.0035 17.2 0.2 0.013 15.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain MutS_V PF00488.16 gi|385775550|ref|YP_005648118.1| - 0.0042 16.5 0.1 0.023 14.1 0.0 1.9 2 0 0 2 2 2 1 MutS domain V AAA_17 PF13207.1 gi|385775550|ref|YP_005648118.1| - 0.0058 17.4 0.2 0.011 16.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385775550|ref|YP_005648118.1| - 0.0074 16.4 0.5 0.021 14.9 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385775550|ref|YP_005648118.1| - 0.0088 15.9 0.0 0.085 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|385775550|ref|YP_005648118.1| - 0.011 16.0 0.5 0.22 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|385775550|ref|YP_005648118.1| - 0.011 15.3 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|385775550|ref|YP_005648118.1| - 0.015 15.0 0.3 0.055 13.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|385775550|ref|YP_005648118.1| - 0.015 14.7 0.1 0.032 13.6 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.10 gi|385775550|ref|YP_005648118.1| - 0.016 13.9 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|385775550|ref|YP_005648118.1| - 0.019 14.4 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Adeno_IVa2 PF02456.10 gi|385775550|ref|YP_005648118.1| - 0.025 13.2 0.1 0.039 12.6 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_28 PF13521.1 gi|385775550|ref|YP_005648118.1| - 0.027 14.4 0.1 0.05 13.5 0.1 1.4 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|385775550|ref|YP_005648118.1| - 0.04 12.4 0.0 0.063 11.8 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|385775550|ref|YP_005648118.1| - 0.043 12.9 0.0 0.068 12.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|385775550|ref|YP_005648118.1| - 0.052 13.5 3.7 0.32 10.9 2.6 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|385775550|ref|YP_005648118.1| - 0.052 13.0 0.0 0.095 12.2 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|385775550|ref|YP_005648118.1| - 0.058 12.7 0.0 0.096 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|385775550|ref|YP_005648118.1| - 0.087 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein NTPase_1 PF03266.10 gi|385775550|ref|YP_005648118.1| - 0.091 12.4 4.7 2.9 7.5 3.3 2.2 1 1 0 1 1 1 0 NTPase AAA_24 PF13479.1 gi|385775550|ref|YP_005648118.1| - 0.095 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385775550|ref|YP_005648118.1| - 0.1 12.3 0.5 0.19 11.3 0.1 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|385775550|ref|YP_005648118.1| - 0.12 11.7 0.2 0.66 9.3 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein HTH_34 PF13601.1 gi|385775552|ref|YP_005648120.1| - 1.7e-11 43.9 0.2 2.3e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385775552|ref|YP_005648120.1| - 2.8e-06 26.8 0.1 8.4e-06 25.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|385775552|ref|YP_005648120.1| - 3.3e-05 23.5 0.1 4.9e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|385775552|ref|YP_005648120.1| - 8e-05 22.3 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|385775552|ref|YP_005648120.1| - 0.0019 18.0 0.7 0.0024 17.7 0.5 1.2 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_45 PF14947.1 gi|385775552|ref|YP_005648120.1| - 0.02 14.7 0.4 0.02 14.7 0.3 1.5 2 0 0 2 2 2 0 Winged helix-turn-helix Rrf2 PF02082.15 gi|385775552|ref|YP_005648120.1| - 0.025 14.6 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.14 gi|385775552|ref|YP_005648120.1| - 0.033 13.8 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|385775552|ref|YP_005648120.1| - 0.052 13.1 0.2 0.069 12.7 0.2 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix AAA_21 PF13304.1 gi|385775553|ref|YP_005648121.1| - 1.2e-05 25.4 0.0 1.8e-05 24.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|385775553|ref|YP_005648121.1| - 4.1e-05 23.9 0.0 5.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter DUF772 PF05598.6 gi|385775554|ref|YP_005648122.1| - 0.00022 21.0 0.0 0.00066 19.5 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|385775554|ref|YP_005648122.1| - 0.0072 15.8 0.0 0.06 12.8 0.0 2.0 1 1 1 2 2 2 1 Transposase DDE domain AAA_15 PF13175.1 gi|385775555|ref|YP_005648123.1| - 5e-10 39.0 10.4 6.3e-10 38.6 7.2 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|385775555|ref|YP_005648123.1| - 1.6e-09 38.1 2.4 2.4e-09 37.5 1.6 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|385775555|ref|YP_005648123.1| - 3.4e-09 37.3 6.2 1.2e-08 35.5 4.3 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385775555|ref|YP_005648123.1| - 4.8e-09 35.7 1.2 5e-09 35.7 0.4 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.3 gi|385775555|ref|YP_005648123.1| - 8.4e-06 25.0 0.3 1.2e-05 24.5 0.2 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_29 PF13555.1 gi|385775555|ref|YP_005648123.1| - 4.8e-05 22.8 0.0 7.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|385775555|ref|YP_005648123.1| - 0.00064 18.6 0.0 0.00077 18.4 0.0 1.1 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.22 gi|385775555|ref|YP_005648123.1| - 0.0011 19.2 0.1 0.0016 18.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.18 gi|385775555|ref|YP_005648123.1| - 0.0022 17.9 0.3 0.0036 17.2 0.2 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|385775555|ref|YP_005648123.1| - 0.0041 15.6 3.4 0.0073 14.8 0.1 1.9 1 1 1 2 2 2 1 AAA domain Dynamin_N PF00350.18 gi|385775555|ref|YP_005648123.1| - 0.034 13.9 0.7 0.14 12.0 0.5 1.9 1 1 0 1 1 1 0 Dynamin family Arch_ATPase PF01637.13 gi|385775555|ref|YP_005648123.1| - 0.043 13.4 0.6 0.063 12.9 0.4 1.3 1 0 0 1 1 1 0 Archaeal ATPase TM1586_NiRdase PF14512.1 gi|385775555|ref|YP_005648123.1| - 0.12 11.5 0.7 0.18 10.9 0.5 1.2 1 0 0 1 1 1 0 Putative TM nitroreductase AAA_21 PF13304.1 gi|385775556|ref|YP_005648124.1| - 1.1e-13 51.8 0.9 1.4e-13 51.4 0.6 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385775556|ref|YP_005648124.1| - 2.5e-13 49.8 0.1 4e-13 49.1 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|385775556|ref|YP_005648124.1| - 0.029 12.8 0.3 0.036 12.5 0.2 1.1 1 0 0 1 1 1 0 AAA domain Glycos_transf_2 PF00535.21 gi|385775557|ref|YP_005648125.1| - 2.1e-06 27.4 0.0 3.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 AA_kinase PF00696.23 gi|385775557|ref|YP_005648125.1| - 0.01 15.3 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 0 Amino acid kinase family AAA_15 PF13175.1 gi|385775558|ref|YP_005648126.1| - 3.2e-12 46.2 8.1 1.3e-07 31.0 3.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|385775558|ref|YP_005648126.1| - 6.7e-12 45.9 13.1 1.3e-10 41.7 6.4 3.1 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|385775558|ref|YP_005648126.1| - 1.2e-07 32.2 1.7 1.7e-07 31.7 1.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385775558|ref|YP_005648126.1| - 9.2e-05 22.5 0.0 0.00042 20.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|385775558|ref|YP_005648126.1| - 0.00034 20.9 0.0 0.00067 19.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|385775558|ref|YP_005648126.1| - 0.0008 18.6 1.2 0.002 17.4 0.8 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385775558|ref|YP_005648126.1| - 0.0036 16.5 0.0 0.012 14.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 DUF2813 PF11398.3 gi|385775558|ref|YP_005648126.1| - 0.0049 15.9 0.0 0.63 9.0 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) MMR_HSR1 PF01926.18 gi|385775558|ref|YP_005648126.1| - 0.007 16.3 0.7 0.021 14.7 0.5 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|385775558|ref|YP_005648126.1| - 0.0072 16.8 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Arch_ATPase PF01637.13 gi|385775558|ref|YP_005648126.1| - 0.021 14.5 2.4 0.086 12.5 1.7 1.9 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|385775558|ref|YP_005648126.1| - 0.081 12.8 1.1 5.2 6.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|385775558|ref|YP_005648126.1| - 0.14 12.4 0.0 15 5.8 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF4116 PF13475.1 gi|385775559|ref|YP_005648127.1| - 0.29 10.6 2.5 1.9 8.0 0.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4116) UCR_hinge PF02320.11 gi|385775559|ref|YP_005648127.1| - 1.8 8.5 6.7 1.3 9.0 2.1 2.3 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase hinge protein FTR1 PF03239.9 gi|385775560|ref|YP_005648128.1| - 0.027 13.4 2.9 0.03 13.2 2.0 1.0 1 0 0 1 1 1 0 Iron permease FTR1 family DUF3165 PF11364.3 gi|385775560|ref|YP_005648128.1| - 0.074 13.1 1.6 0.092 12.8 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3165) SdpI PF13630.1 gi|385775560|ref|YP_005648128.1| - 1.4 8.7 4.7 1.7 8.4 3.3 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family Epimerase PF01370.16 gi|385775561|ref|YP_005648129.1| - 2.4e-61 207.1 0.0 2.9e-61 206.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385775561|ref|YP_005648129.1| - 8.5e-20 70.8 0.0 1.1e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|385775561|ref|YP_005648129.1| - 4.3e-16 58.4 0.0 5.4e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|385775561|ref|YP_005648129.1| - 1.6e-13 50.1 0.6 8.5e-12 44.5 0.0 2.2 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|385775561|ref|YP_005648129.1| - 2.3e-12 47.3 0.0 2.8e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|385775561|ref|YP_005648129.1| - 2.5e-11 43.0 0.0 6.4e-11 41.6 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.8 gi|385775561|ref|YP_005648129.1| - 1.4e-06 27.6 0.2 0.00069 18.9 0.1 2.1 2 0 0 2 2 2 2 NmrA-like family Saccharop_dh PF03435.13 gi|385775561|ref|YP_005648129.1| - 9.6e-05 21.5 0.2 0.00015 20.8 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|385775561|ref|YP_005648129.1| - 0.00012 21.9 0.1 0.0002 21.1 0.1 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain adh_short PF00106.20 gi|385775561|ref|YP_005648129.1| - 0.012 15.5 0.8 0.031 14.1 0.0 2.0 2 0 0 2 2 2 0 short chain dehydrogenase NAD_binding_3 PF03447.11 gi|385775561|ref|YP_005648129.1| - 0.032 14.6 0.1 0.055 13.8 0.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|385775561|ref|YP_005648129.1| - 0.057 13.3 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|385775561|ref|YP_005648129.1| - 0.065 13.6 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PSS PF03034.10 gi|385775561|ref|YP_005648129.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphatidyl serine synthase TrkA_N PF02254.13 gi|385775561|ref|YP_005648129.1| - 0.12 12.3 0.2 0.25 11.3 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain NTP_transferase PF00483.18 gi|385775562|ref|YP_005648130.1| - 1.4e-53 181.7 0.0 1.8e-53 181.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385775562|ref|YP_005648130.1| - 4.1e-10 39.9 0.0 5.8e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|385775562|ref|YP_005648130.1| - 2.6e-05 23.5 5.6 0.16 11.5 0.0 5.0 3 2 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|385775562|ref|YP_005648130.1| - 0.0056 16.2 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.7 gi|385775562|ref|YP_005648130.1| - 0.014 14.0 0.3 0.023 13.2 0.2 1.3 1 0 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.1 gi|385775562|ref|YP_005648130.1| - 0.036 13.6 0.1 0.036 13.6 0.0 4.2 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase CTP_transf_3 PF02348.14 gi|385775562|ref|YP_005648130.1| - 0.051 13.1 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase RmlD_sub_bind PF04321.12 gi|385775563|ref|YP_005648131.1| - 2.5e-63 213.6 0.0 2.7e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|385775563|ref|YP_005648131.1| - 2.4e-19 69.7 0.0 3.4e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|385775563|ref|YP_005648131.1| - 2.6e-06 26.5 0.0 1e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|385775563|ref|YP_005648131.1| - 5.6e-05 22.1 0.8 0.0026 16.7 0.0 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|385775563|ref|YP_005648131.1| - 0.016 15.1 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding Rep_2 PF01719.12 gi|385775563|ref|YP_005648131.1| - 0.092 12.2 0.0 3.8 6.9 0.0 2.3 2 1 0 2 2 2 0 Plasmid replication protein dTDP_sugar_isom PF00908.12 gi|385775564|ref|YP_005648132.1| - 2.2e-54 183.4 0.0 2.7e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|385775564|ref|YP_005648132.1| - 0.021 14.3 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 WxcM-like, C-terminal Methyltransf_23 PF13489.1 gi|385775565|ref|YP_005648133.1| - 2.1e-21 76.3 0.0 2.7e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385775565|ref|YP_005648133.1| - 5.5e-19 68.4 0.0 1.1e-18 67.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385775565|ref|YP_005648133.1| - 1.7e-11 43.9 0.3 5.7e-11 42.2 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385775565|ref|YP_005648133.1| - 3.4e-11 43.4 0.0 7.1e-11 42.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|385775565|ref|YP_005648133.1| - 7.6e-11 41.7 0.0 1.1e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|385775565|ref|YP_005648133.1| - 1.9e-06 27.7 0.1 4e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|385775565|ref|YP_005648133.1| - 4.2e-06 27.3 0.0 2.1e-05 25.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385775565|ref|YP_005648133.1| - 3.1e-05 24.2 0.0 6.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385775565|ref|YP_005648133.1| - 0.0023 17.0 0.1 0.0034 16.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|385775565|ref|YP_005648133.1| - 0.0038 16.3 0.0 0.14 11.2 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase Ubie_methyltran PF01209.13 gi|385775565|ref|YP_005648133.1| - 0.0047 16.0 0.0 0.011 14.9 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DUF938 PF06080.7 gi|385775565|ref|YP_005648133.1| - 0.0048 16.4 0.0 0.011 15.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_26 PF13659.1 gi|385775565|ref|YP_005648133.1| - 0.005 16.8 0.0 0.014 15.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|385775565|ref|YP_005648133.1| - 0.076 12.0 0.0 0.15 11.1 0.0 1.5 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Met_10 PF02475.11 gi|385775567|ref|YP_005648135.1| - 2.2e-09 37.1 0.4 2.5e-09 37.0 0.3 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_21 PF05050.7 gi|385775567|ref|YP_005648135.1| - 2.4e-07 30.8 0.0 2.8e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|385775567|ref|YP_005648135.1| - 3.6e-06 27.5 0.0 4.3e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|385775567|ref|YP_005648135.1| - 0.00036 19.6 0.1 0.00043 19.4 0.0 1.0 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein PCMT PF01135.14 gi|385775567|ref|YP_005648135.1| - 0.0015 18.0 0.0 0.0018 17.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|385775567|ref|YP_005648135.1| - 0.0043 16.2 0.0 0.0046 16.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|385775567|ref|YP_005648135.1| - 0.011 15.1 0.0 0.013 14.9 0.0 1.0 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|385775567|ref|YP_005648135.1| - 0.02 14.4 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385775567|ref|YP_005648135.1| - 0.053 13.5 0.0 0.062 13.3 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.11 gi|385775567|ref|YP_005648135.1| - 0.07 12.0 0.2 0.074 11.9 0.1 1.0 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.4 gi|385775567|ref|YP_005648135.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.0 1 0 0 1 1 1 0 Putative methyltransferase FtsJ PF01728.14 gi|385775567|ref|YP_005648135.1| - 0.13 12.2 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_21 PF05050.7 gi|385775568|ref|YP_005648136.1| - 7.3e-10 39.0 1.0 1e-09 38.5 0.6 1.3 1 1 0 1 1 1 1 Methyltransferase FkbM domain TraC PF07820.7 gi|385775568|ref|YP_005648136.1| - 0.11 12.6 0.4 0.97 9.6 0.0 2.4 3 0 0 3 3 3 0 TraC-like protein Glycos_transf_2 PF00535.21 gi|385775571|ref|YP_005648139.1| - 2.7e-10 40.1 0.5 4.7e-10 39.3 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|385775571|ref|YP_005648139.1| - 0.0025 16.9 1.5 0.004 16.2 1.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|385775571|ref|YP_005648139.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Bunya_NS-S PF01104.12 gi|385775571|ref|YP_005648139.1| - 0.022 14.2 0.1 0.062 12.7 0.2 1.7 2 0 0 2 2 2 0 Bunyavirus non-structural protein NS-s U3_assoc_6 PF08640.6 gi|385775571|ref|YP_005648139.1| - 0.042 13.5 1.8 0.25 11.1 0.2 2.4 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 Methyltransf_21 PF05050.7 gi|385775574|ref|YP_005648142.1| - 9.2e-17 61.4 0.2 1.5e-16 60.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|385775574|ref|YP_005648142.1| - 2.4e-09 37.7 0.0 3.9e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|385775574|ref|YP_005648142.1| - 0.00056 19.5 0.7 0.001 18.7 0.5 1.5 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|385775574|ref|YP_005648142.1| - 0.0011 18.5 0.1 0.0036 16.8 0.1 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|385775574|ref|YP_005648142.1| - 0.011 14.4 0.0 0.013 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|385775574|ref|YP_005648142.1| - 0.013 15.0 0.0 0.027 14.0 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|385775574|ref|YP_005648142.1| - 0.023 13.7 0.1 0.034 13.2 0.1 1.2 1 0 0 1 1 1 0 Putative methyltransferase PrmA PF06325.8 gi|385775574|ref|YP_005648142.1| - 0.081 12.0 0.2 0.13 11.4 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Glycos_transf_1 PF00534.15 gi|385775575|ref|YP_005648143.1| - 2.9e-21 75.6 0.0 5.2e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385775575|ref|YP_005648143.1| - 6.8e-10 39.2 0.0 1.1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1374 PF07118.6 gi|385775575|ref|YP_005648143.1| - 0.035 14.2 0.8 0.035 14.2 0.5 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1374) Glyco_trans_1_2 PF13524.1 gi|385775575|ref|YP_005648143.1| - 0.035 14.3 0.0 0.062 13.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 DEDD_Tnp_IS110 PF01548.12 gi|385775577|ref|YP_005648145.1| - 4.9e-34 117.0 0.1 1.2e-33 115.8 0.0 1.6 2 0 0 2 2 2 1 Transposase Transposase_20 PF02371.11 gi|385775577|ref|YP_005648145.1| - 2e-07 31.0 0.1 3.6e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DDE_Tnp_ISL3 PF01610.12 gi|385775577|ref|YP_005648145.1| - 0.026 14.1 0.2 0.051 13.1 0.1 1.5 2 0 0 2 2 2 0 Transposase ArsA_ATPase PF02374.10 gi|385775577|ref|YP_005648145.1| - 0.03 13.3 1.1 0.055 12.5 0.8 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Peptidase_S48 PF03574.10 gi|385775577|ref|YP_005648145.1| - 0.053 13.5 0.4 0.11 12.5 0.1 1.7 2 0 0 2 2 2 0 Peptidase family S48 FlgN PF05130.7 gi|385775577|ref|YP_005648145.1| - 0.17 12.1 10.0 0.061 13.5 4.4 2.1 2 1 0 2 2 2 0 FlgN protein Lipoprotein_6 PF01441.14 gi|385775577|ref|YP_005648145.1| - 3.1 7.6 9.7 1.6 8.5 4.6 2.1 2 1 0 2 2 2 0 Lipoprotein Takusan PF04822.8 gi|385775577|ref|YP_005648145.1| - 4.7 7.0 10.6 4.5 7.0 0.3 2.5 2 0 0 2 2 2 0 Takusan Transposase_20 PF02371.11 gi|385775578|ref|YP_005648146.1| - 1.2e-28 98.9 0.0 2.6e-28 97.9 0.0 1.6 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DEDD_Tnp_IS110 PF01548.12 gi|385775578|ref|YP_005648146.1| - 3.4e-17 62.4 0.0 6.5e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 Transposase ALIX_LYPXL_bnd PF13949.1 gi|385775578|ref|YP_005648146.1| - 0.067 12.1 0.7 0.088 11.7 0.5 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DMAP1 PF05499.7 gi|385775578|ref|YP_005648146.1| - 0.35 10.3 3.1 4 6.9 1.2 2.3 2 0 0 2 2 2 0 DNA methyltransferase 1-associated protein 1 (DMAP1) Methyltransf_23 PF13489.1 gi|385775580|ref|YP_005648148.1| - 1e-05 25.2 0.0 1.1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385775580|ref|YP_005648148.1| - 0.00011 22.6 0.0 0.00016 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385775580|ref|YP_005648148.1| - 0.0023 18.3 0.0 0.0034 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385775580|ref|YP_005648148.1| - 0.01 16.3 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|385775580|ref|YP_005648148.1| - 0.014 14.9 0.0 0.018 14.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.12 gi|385775580|ref|YP_005648148.1| - 0.021 13.8 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase MetW PF07021.7 gi|385775580|ref|YP_005648148.1| - 0.023 14.0 0.0 0.027 13.8 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|385775580|ref|YP_005648148.1| - 0.04 14.2 0.0 0.065 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.21 gi|385775581|ref|YP_005648149.1| - 4.1e-34 117.7 0.1 6.2e-34 117.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385775581|ref|YP_005648149.1| - 8.8e-21 74.7 0.0 1.2e-20 74.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|385775581|ref|YP_005648149.1| - 8.2e-16 57.9 0.3 1.1e-15 57.5 0.2 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|385775581|ref|YP_005648149.1| - 5.9e-05 23.3 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|385775581|ref|YP_005648149.1| - 0.00012 21.8 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|385775581|ref|YP_005648149.1| - 0.011 15.0 0.0 0.019 14.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|385775581|ref|YP_005648149.1| - 0.015 14.5 0.0 0.034 13.3 0.0 1.6 1 1 1 2 2 2 0 Glycosyltransferase like family Glyco_transf_64 PF09258.5 gi|385775581|ref|YP_005648149.1| - 0.029 13.5 0.1 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain DUF1189 PF06691.6 gi|385775581|ref|YP_005648149.1| - 0.17 11.1 0.7 0.28 10.4 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) Methyltransf_23 PF13489.1 gi|385775582|ref|YP_005648150.1| - 1.6e-07 31.2 0.0 2.2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385775582|ref|YP_005648150.1| - 0.0077 16.7 0.0 0.17 12.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385775582|ref|YP_005648150.1| - 0.013 15.1 0.0 0.017 14.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Pho86 PF11124.3 gi|385775582|ref|YP_005648150.1| - 0.096 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 Methyltransf_2 PF00891.13 gi|385775583|ref|YP_005648151.1| - 0.003 16.8 0.0 0.003 16.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.1 gi|385775583|ref|YP_005648151.1| - 0.0049 16.6 0.0 0.0067 16.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DUF4110 PF13422.1 gi|385775583|ref|YP_005648151.1| - 0.056 13.2 1.1 0.076 12.8 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) Methyltransf_21 PF05050.7 gi|385775584|ref|YP_005648152.1| - 1.6e-07 31.4 0.1 1.8e-07 31.2 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain AMIN PF11741.3 gi|385775584|ref|YP_005648152.1| - 0.071 13.0 0.7 0.12 12.3 0.5 1.6 1 1 0 1 1 1 0 AMIN domain Glyco_trans_1_4 PF13692.1 gi|385775587|ref|YP_005648155.1| - 4.4e-11 43.0 0.0 7.7e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|385775587|ref|YP_005648155.1| - 5.7e-11 42.1 0.1 2.7e-10 39.9 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385775587|ref|YP_005648155.1| - 0.031 14.5 0.1 0.33 11.2 0.0 2.4 2 1 1 3 3 3 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|385775588|ref|YP_005648156.1| - 2e-15 56.8 2.0 1e-13 51.3 0.8 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385775588|ref|YP_005648156.1| - 0.00071 19.4 0.0 0.041 13.6 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 DUF3367 PF11847.3 gi|385775589|ref|YP_005648157.1| - 0.7 7.7 0.0 0.7 7.7 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3367) TMEMspv1-c74-12 PF11044.3 gi|385775590|ref|YP_005648158.1| - 4.9 6.7 7.3 1.1 8.9 2.3 1.7 1 1 1 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Glycos_transf_2 PF00535.21 gi|385775592|ref|YP_005648160.1| - 0.009 15.7 0.0 0.009 15.7 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF3625 PF12293.3 gi|385775592|ref|YP_005648160.1| - 0.022 13.8 0.0 0.024 13.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3625) Glycos_transf_2 PF00535.21 gi|385775593|ref|YP_005648161.1| - 6e-07 29.3 0.2 1.4e-06 28.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|385775593|ref|YP_005648161.1| - 5.5e-05 22.5 0.0 0.00018 20.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family ELFV_dehydrog PF00208.16 gi|385775593|ref|YP_005648161.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.5 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sulfatase PF00884.18 gi|385775594|ref|YP_005648162.1| - 3.8e-21 75.5 0.0 1.1e-20 74.0 0.0 1.7 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|385775594|ref|YP_005648162.1| - 3.2e-07 29.9 0.1 0.0013 18.1 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|385775594|ref|YP_005648162.1| - 2.7e-05 22.8 0.0 4.5e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|385775594|ref|YP_005648162.1| - 0.061 12.6 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.21 gi|385775595|ref|YP_005648163.1| - 2.2e-19 69.7 0.1 5.9e-19 68.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385775595|ref|YP_005648163.1| - 9.1e-10 38.7 0.0 2.4e-09 37.3 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|385775595|ref|YP_005648163.1| - 0.067 13.5 0.0 0.32 11.3 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase family 2 Borrelia_lipo_2 PF06238.6 gi|385775595|ref|YP_005648163.1| - 0.7 9.9 10.4 0.34 10.9 0.4 2.9 2 1 0 2 2 2 0 Borrelia burgdorferi BBR25 lipoprotein PIG-L PF02585.12 gi|385775596|ref|YP_005648164.1| - 9.4e-23 81.1 0.0 1.3e-22 80.6 0.0 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase zf-C2H2_2 PF12756.2 gi|385775596|ref|YP_005648164.1| - 0.044 13.8 1.4 0.098 12.7 1.0 1.5 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) Methyltransf_21 PF05050.7 gi|385775597|ref|YP_005648165.1| - 1.4e-14 54.4 0.0 2.4e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain Peptidase_A17 PF05380.8 gi|385775597|ref|YP_005648165.1| - 0.019 14.8 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Pao retrotransposon peptidase Methyltransf_18 PF12847.2 gi|385775597|ref|YP_005648165.1| - 0.026 15.0 0.0 0.044 14.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain FtsH_ext PF06480.10 gi|385775597|ref|YP_005648165.1| - 0.21 11.7 1.7 4.2 7.5 0.0 2.9 2 1 0 2 2 2 0 FtsH Extracellular PAPS_reduct PF01507.14 gi|385775598|ref|YP_005648166.1| - 1.5e-33 116.0 0.0 4e-33 114.6 0.0 1.6 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|385775598|ref|YP_005648166.1| - 0.00021 20.7 0.0 0.00051 19.4 0.0 1.7 2 0 0 2 2 2 1 ATP-binding region ATP_bind_3 PF01171.15 gi|385775598|ref|YP_005648166.1| - 0.00027 20.5 0.0 0.00051 19.5 0.0 1.4 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|385775598|ref|YP_005648166.1| - 0.026 13.8 0.0 0.07 12.4 0.0 1.6 1 1 1 2 2 2 0 Queuosine biosynthesis protein QueC Usp PF00582.21 gi|385775598|ref|YP_005648166.1| - 0.054 13.6 0.0 18 5.5 0.0 3.1 2 1 1 3 3 3 0 Universal stress protein family Polysacc_synt PF01943.12 gi|385775599|ref|YP_005648167.1| - 7.7e-15 54.8 30.6 7.7e-15 54.8 21.2 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|385775599|ref|YP_005648167.1| - 4.5e-05 23.0 24.5 4.5e-05 23.0 17.0 3.7 2 1 2 4 4 4 1 Polysaccharide biosynthesis protein Methyltransf_21 PF05050.7 gi|385775600|ref|YP_005648168.1| - 1.9e-15 57.2 0.2 2.7e-15 56.6 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|385775600|ref|YP_005648168.1| - 2e-10 40.5 0.5 2.6e-10 40.2 0.4 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|385775600|ref|YP_005648168.1| - 3.2e-05 24.4 0.0 7.3e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|385775600|ref|YP_005648168.1| - 0.0012 17.9 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.10 gi|385775600|ref|YP_005648168.1| - 0.041 13.2 0.0 0.088 12.1 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ribosomal_L37 PF08561.5 gi|385775600|ref|YP_005648168.1| - 0.085 12.4 0.1 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L37 AAA_14 PF13173.1 gi|385775602|ref|YP_005648170.1| - 2.1e-20 72.8 0.0 7.3e-20 71.1 0.0 2.0 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|385775602|ref|YP_005648170.1| - 2.3e-08 34.0 0.4 3.9e-08 33.3 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) HTH_29 PF13551.1 gi|385775602|ref|YP_005648170.1| - 0.031 14.4 0.0 0.18 11.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix DUF4394 PF14339.1 gi|385775602|ref|YP_005648170.1| - 0.097 11.9 0.1 0.2 10.9 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4394) HTH_Tnp_ISL3 PF13542.1 gi|385775602|ref|YP_005648170.1| - 0.1 11.8 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Cas_DxTHG PF09455.5 gi|385775603|ref|YP_005648171.1| - 3.1e-44 151.6 9.9 3.8e-44 151.3 6.8 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family OrfB_IS605 PF01385.14 gi|385775604|ref|YP_005648172.1| - 1.7e-37 128.9 6.3 3.7e-37 127.9 4.4 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775604|ref|YP_005648172.1| - 2.7e-27 94.2 0.3 7.7e-27 92.7 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385775604|ref|YP_005648172.1| - 2.1e-08 33.3 1.3 2.8e-08 32.9 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|385775604|ref|YP_005648172.1| - 0.056 12.6 0.6 9.1 5.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Occludin_ELL PF07303.8 gi|385775604|ref|YP_005648172.1| - 0.095 13.4 0.8 0.095 13.4 0.6 2.7 2 1 0 2 2 2 0 Occludin homology domain DUF3543 PF12063.3 gi|385775604|ref|YP_005648172.1| - 0.1 11.7 5.0 0.67 9.1 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3543) TF_Zn_Ribbon PF08271.7 gi|385775604|ref|YP_005648172.1| - 0.14 11.4 1.1 5.5 6.3 0.0 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|385775604|ref|YP_005648172.1| - 0.15 11.5 1.4 14 5.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|385775604|ref|YP_005648172.1| - 0.84 9.8 3.2 0.48 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) MtrG PF04210.8 gi|385775604|ref|YP_005648172.1| - 8.3 6.1 6.9 2.3 7.9 0.0 3.3 4 1 1 5 5 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G Y1_Tnp PF01797.11 gi|385775605|ref|YP_005648173.1| - 2.2e-38 130.8 2.3 2.4e-38 130.6 1.6 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF836 PF05768.9 gi|385775605|ref|YP_005648173.1| - 0.069 13.4 0.1 0.092 13.0 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DUF1638 PF07796.6 gi|385775605|ref|YP_005648173.1| - 0.08 12.5 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) FBP PF07299.6 gi|385775605|ref|YP_005648173.1| - 0.12 11.6 0.7 0.17 11.1 0.5 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) DUF1241 PF06840.6 gi|385775606|ref|YP_005648174.1| - 0.00099 18.3 3.6 0.0027 16.9 0.8 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1241) RHH_1 PF01402.16 gi|385775606|ref|YP_005648174.1| - 0.0057 16.5 1.3 0.0057 16.5 0.9 3.3 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family CcdA PF07362.7 gi|385775606|ref|YP_005648174.1| - 0.0094 15.8 2.7 0.0094 15.8 1.9 1.4 1 1 1 2 2 2 1 Post-segregation antitoxin CcdA Pox_VLTF3 PF04947.9 gi|385775606|ref|YP_005648174.1| - 0.0094 15.4 3.0 0.01 15.3 2.1 1.1 1 0 0 1 1 1 1 Poxvirus Late Transcription Factor VLTF3 like ATP_bind_4 PF01902.12 gi|385775606|ref|YP_005648174.1| - 0.044 13.1 2.1 0.055 12.8 1.5 1.2 1 0 0 1 1 1 0 ATP-binding region ADPrib_exo_Tox PF03496.9 gi|385775606|ref|YP_005648174.1| - 0.097 11.8 1.2 0.098 11.8 0.8 1.0 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme DUF2088 PF09861.4 gi|385775606|ref|YP_005648174.1| - 0.13 11.2 1.8 0.14 11.1 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Imm42 PF15601.1 gi|385775606|ref|YP_005648174.1| - 0.19 11.1 1.0 0.22 10.9 0.7 1.2 1 0 0 1 1 1 0 Immunity protein 42 DUF3347 PF11827.3 gi|385775606|ref|YP_005648174.1| - 0.29 11.0 1.8 0.34 10.8 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) pRN1_helical PF13010.1 gi|385775606|ref|YP_005648174.1| - 0.33 10.5 3.8 0.38 10.3 2.6 1.1 1 0 0 1 1 1 0 Primase helical domain Uteroglobin PF01099.12 gi|385775606|ref|YP_005648174.1| - 0.42 10.4 4.1 0.66 9.8 2.9 1.3 1 1 0 1 1 1 0 Uteroglobin family DUF3987 PF13148.1 gi|385775606|ref|YP_005648174.1| - 0.74 8.3 3.7 0.74 8.3 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ATP-synt_E PF05680.7 gi|385775606|ref|YP_005648174.1| - 1.4 8.9 5.2 1.7 8.6 3.6 1.2 1 0 0 1 1 1 0 ATP synthase E chain Kri1 PF05178.7 gi|385775606|ref|YP_005648174.1| - 4.8 7.5 8.8 6.9 7.0 6.1 1.4 1 1 0 1 1 1 0 KRI1-like family PIN PF01850.16 gi|385775607|ref|YP_005648175.1| - 1.2e-05 25.6 0.0 1.3e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 PIN domain RAMPs PF03787.10 gi|385775608|ref|YP_005648176.1| - 2e-20 73.5 0.0 3.4e-20 72.8 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|385775610|ref|YP_005648178.1| - 2.8e-05 24.0 3.9 6.5e-05 22.8 1.1 2.5 2 1 0 2 2 2 1 RAMP superfamily NurA PF09376.5 gi|385775610|ref|YP_005648178.1| - 0.0078 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 NurA domain RAMPs PF03787.10 gi|385775611|ref|YP_005648179.1| - 2.2e-09 37.5 0.3 4.2e-09 36.5 0.2 1.6 1 1 0 1 1 1 1 RAMP superfamily DUF3692 PF12469.3 gi|385775612|ref|YP_005648180.1| - 7.9e-30 103.4 0.6 2.6e-29 101.8 0.4 2.0 1 0 0 1 1 1 1 CRISPR-associated protein TAFH PF07531.9 gi|385775612|ref|YP_005648180.1| - 0.05 13.2 0.1 0.51 10.0 0.0 2.5 2 0 0 2 2 2 0 NHR1 homology to TAF Cas_Cmr3 PF09700.5 gi|385775613|ref|YP_005648181.1| - 1e-12 48.1 0.2 1.1e-10 41.4 0.0 2.2 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) AAA_14 PF13173.1 gi|385775614|ref|YP_005648182.1| - 1.6e-24 86.2 0.9 3.8e-24 85.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.1 gi|385775614|ref|YP_005648182.1| - 5e-10 39.4 1.8 7.1e-10 38.9 1.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|385775614|ref|YP_005648182.1| - 3.4e-07 30.2 6.3 3.8e-05 23.4 0.2 3.4 3 1 1 4 4 4 2 Archaeal ATPase AAA PF00004.24 gi|385775614|ref|YP_005648182.1| - 0.00031 20.9 0.0 0.00084 19.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|385775614|ref|YP_005648182.1| - 0.0057 16.6 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain HTH_10 PF04967.7 gi|385775614|ref|YP_005648182.1| - 0.049 13.2 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Tox-REase-3 PF15647.1 gi|385775614|ref|YP_005648182.1| - 0.05 13.3 1.1 0.068 12.9 0.1 1.7 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 3 FtsK_SpoIIIE PF01580.13 gi|385775614|ref|YP_005648182.1| - 0.059 12.8 0.1 0.27 10.6 0.0 1.9 1 1 0 1 1 1 0 FtsK/SpoIIIE family HTH_36 PF13730.1 gi|385775614|ref|YP_005648182.1| - 0.063 13.4 0.1 0.33 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|385775614|ref|YP_005648182.1| - 0.065 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|385775614|ref|YP_005648182.1| - 0.092 12.0 0.0 0.23 10.7 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF793 PF05633.6 gi|385775614|ref|YP_005648182.1| - 0.096 11.4 0.1 0.19 10.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF793) HTH_24 PF13412.1 gi|385775614|ref|YP_005648182.1| - 0.11 11.8 0.0 0.25 10.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|385775614|ref|YP_005648182.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PaREP1 PF05942.6 gi|385775615|ref|YP_005648183.1| - 4.1e-24 84.6 0.1 6e-24 84.1 0.1 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4322 PF14210.1 gi|385775616|ref|YP_005648184.1| - 1.4e-25 88.4 0.1 2.9e-25 87.5 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385775616|ref|YP_005648184.1| - 0.00031 20.5 0.0 0.64 9.9 0.0 2.3 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain PASTA PF03793.14 gi|385775616|ref|YP_005648184.1| - 0.035 13.7 0.1 1.2 8.8 0.0 2.5 2 1 0 2 2 2 0 PASTA domain HTH_23 PF13384.1 gi|385775616|ref|YP_005648184.1| - 0.061 13.0 0.0 0.9 9.2 0.0 2.6 2 1 1 3 3 3 0 Homeodomain-like domain DUF416 PF04222.7 gi|385775616|ref|YP_005648184.1| - 0.1 11.7 0.1 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF416) DDE_5 PF13546.1 gi|385775616|ref|YP_005648184.1| - 0.12 11.1 0.0 0.4 9.5 0.0 1.7 2 0 0 2 2 2 0 DDE superfamily endonuclease DUF772 PF05598.6 gi|385775617|ref|YP_005648185.1| - 0.00022 21.0 0.0 0.00066 19.5 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|385775617|ref|YP_005648185.1| - 0.0056 16.2 0.0 0.043 13.3 0.0 2.0 1 1 1 2 2 2 1 Transposase DDE domain HEPN PF05168.9 gi|385775618|ref|YP_005648186.1| - 3.3e-35 120.5 0.1 4e-35 120.2 0.1 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|385775619|ref|YP_005648187.1| - 1.6e-09 37.9 1.4 2.4e-09 37.4 1.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain PaREP1 PF05942.6 gi|385775620|ref|YP_005648188.1| - 9.8e-23 80.2 0.0 1.4e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family RHH_1 PF01402.16 gi|385775621|ref|YP_005648189.1| - 0.0012 18.5 0.0 0.0027 17.5 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family SpoIISB_antitox PF14185.1 gi|385775621|ref|YP_005648189.1| - 0.2 11.4 0.8 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 Antitoxin SpoIISB, type II toxin-antitoxin system Radical_SAM PF04055.16 gi|385775622|ref|YP_005648190.1| - 5.7e-27 94.9 0.0 2.2e-23 83.2 0.0 2.4 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.1 gi|385775622|ref|YP_005648190.1| - 1.2e-09 38.3 0.0 2.7e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385775622|ref|YP_005648190.1| - 2.4e-09 37.2 0.0 5.2e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|385775622|ref|YP_005648190.1| - 4.8e-08 33.2 0.6 4.8e-08 33.2 0.4 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain AP_endonuc_2 PF01261.19 gi|385775622|ref|YP_005648190.1| - 2.2e-05 23.8 0.0 0.013 14.7 0.0 2.3 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|385775622|ref|YP_005648190.1| - 0.018 14.1 0.0 0.57 9.2 0.0 2.1 2 0 0 2 2 2 0 Glycoside hydrolase 97 Cas_Cas4 PF01930.12 gi|385775622|ref|YP_005648190.1| - 0.078 12.8 0.3 0.16 11.8 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF83 Radical_SAM PF04055.16 gi|385775623|ref|YP_005648191.1| - 1.4e-15 57.8 0.0 2.4e-14 53.8 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385775623|ref|YP_005648191.1| - 2.7e-07 30.8 0.0 5.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385775623|ref|YP_005648191.1| - 2.4e-05 24.3 0.0 4.9e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|385775623|ref|YP_005648191.1| - 2.4e-05 24.5 0.1 2.4e-05 24.5 0.0 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain IF2_N PF04760.10 gi|385775623|ref|YP_005648191.1| - 0.014 14.9 0.9 3 7.5 0.0 3.5 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Aldedh PF00171.17 gi|385775624|ref|YP_005648192.1| - 1.3e-148 495.1 0.1 1.5e-148 494.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF4310 PF14187.1 gi|385775624|ref|YP_005648192.1| - 0.035 13.6 0.2 0.056 12.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4310) PaREP1 PF05942.6 gi|385775626|ref|YP_005648194.1| - 9.6e-24 83.4 1.9 1e-23 83.3 1.3 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Arch_ATPase PF01637.13 gi|385775627|ref|YP_005648195.1| - 1.6e-34 119.6 3.3 2.6e-34 118.9 2.3 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|385775627|ref|YP_005648195.1| - 5.8e-12 45.6 1.9 3.8e-05 23.5 0.4 2.5 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|385775627|ref|YP_005648195.1| - 1.7e-08 34.6 0.1 1.8e-07 31.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|385775627|ref|YP_005648195.1| - 1.1e-05 25.4 0.0 2.3e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|385775627|ref|YP_005648195.1| - 1.7e-05 25.0 0.0 5.2e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.1 gi|385775627|ref|YP_005648195.1| - 0.00051 18.7 0.0 0.054 12.1 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain Miro PF08477.8 gi|385775627|ref|YP_005648195.1| - 0.0063 17.0 0.1 0.013 16.0 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|385775627|ref|YP_005648195.1| - 0.0085 15.8 0.1 0.02 14.5 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|385775627|ref|YP_005648195.1| - 0.011 16.5 1.0 0.04 14.7 0.7 2.3 1 1 0 1 1 1 0 AAA domain 6PF2K PF01591.13 gi|385775627|ref|YP_005648195.1| - 0.014 14.5 0.1 0.026 13.5 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase BLOC1_2 PF10046.4 gi|385775627|ref|YP_005648195.1| - 0.02 15.0 0.9 0.042 13.9 0.2 1.8 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SRPRB PF09439.5 gi|385775627|ref|YP_005648195.1| - 0.027 13.6 1.4 0.3 10.2 0.1 2.3 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit HTH_45 PF14947.1 gi|385775627|ref|YP_005648195.1| - 0.076 12.8 1.9 2.2 8.1 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn-helix AAA_23 PF13476.1 gi|385775627|ref|YP_005648195.1| - 3.8 7.7 9.9 14 5.9 6.9 2.2 1 1 0 1 1 1 0 AAA domain Glycos_transf_1 PF00534.15 gi|385775628|ref|YP_005648196.1| - 3.8e-15 55.7 0.0 6.8e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385775628|ref|YP_005648196.1| - 1.5e-08 34.7 0.0 7.9e-08 32.4 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385775628|ref|YP_005648196.1| - 3.4e-06 27.2 0.0 6.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2204 PF09970.4 gi|385775630|ref|YP_005648198.1| - 0.00048 19.6 2.0 0.0015 18.0 0.1 2.1 2 0 0 2 2 2 1 Nucleotidyl transferase of unknown function (DUF2204) HEPN PF05168.9 gi|385775631|ref|YP_005648199.1| - 3.1e-28 98.0 0.6 3.7e-28 97.7 0.4 1.0 1 0 0 1 1 1 1 HEPN domain TPR_11 PF13414.1 gi|385775631|ref|YP_005648199.1| - 0.0053 16.3 0.7 0.011 15.3 0.5 1.6 1 0 0 1 1 1 1 TPR repeat TPR_12 PF13424.1 gi|385775631|ref|YP_005648199.1| - 0.014 15.2 1.6 0.024 14.5 0.5 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|385775631|ref|YP_005648199.1| - 0.029 14.2 3.0 0.034 14.0 0.9 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|385775631|ref|YP_005648199.1| - 0.031 14.6 0.7 0.031 14.6 0.5 2.4 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|385775631|ref|YP_005648199.1| - 0.036 14.7 1.6 0.052 14.2 0.3 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|385775631|ref|YP_005648199.1| - 0.12 12.2 0.2 2.7 7.9 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|385775632|ref|YP_005648200.1| - 2.6e-11 43.7 1.5 4.2e-11 43.0 1.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|385775632|ref|YP_005648200.1| - 0.026 14.5 0.1 0.035 14.1 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm DUF294 PF03445.8 gi|385775632|ref|YP_005648200.1| - 0.059 12.9 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DDE_3 PF13358.1 gi|385775633|ref|YP_005648201.1| - 1.7e-21 76.5 0.0 4.6e-21 75.0 0.0 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|385775633|ref|YP_005648201.1| - 2.6e-15 56.5 0.2 9.2e-15 54.7 0.1 1.9 1 1 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|385775633|ref|YP_005648201.1| - 1.9e-13 49.5 0.5 1.3e-12 46.9 0.0 2.6 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|385775633|ref|YP_005648201.1| - 1.4e-11 44.1 0.1 1.4e-11 44.1 0.1 2.7 4 0 0 4 4 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|385775633|ref|YP_005648201.1| - 2e-07 31.1 5.4 2.3e-06 27.7 0.1 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|385775633|ref|YP_005648201.1| - 3e-07 29.8 1.3 7.1e-07 28.6 0.0 2.3 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|385775633|ref|YP_005648201.1| - 5e-07 29.4 0.3 1.2e-06 28.2 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase Terminase_5 PF06056.7 gi|385775633|ref|YP_005648201.1| - 6.8e-07 28.7 0.0 1.9e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_32 PF13565.1 gi|385775633|ref|YP_005648201.1| - 7.9e-07 29.7 2.1 1.8e-06 28.6 0.4 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|385775633|ref|YP_005648201.1| - 1.3e-05 24.5 0.0 2.7e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.15 gi|385775633|ref|YP_005648201.1| - 2.5e-05 24.1 0.0 6.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Transposase MarR PF01047.17 gi|385775633|ref|YP_005648201.1| - 3.5e-05 23.4 0.0 0.00015 21.3 0.0 2.0 2 0 0 2 2 1 1 MarR family HTH_40 PF14493.1 gi|385775633|ref|YP_005648201.1| - 4.6e-05 23.5 1.3 0.0001 22.4 0.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|385775633|ref|YP_005648201.1| - 0.00022 20.8 2.6 0.0004 20.0 1.8 1.4 1 0 0 1 1 1 1 Transposase TrmB PF01978.14 gi|385775633|ref|YP_005648201.1| - 0.00028 20.5 0.0 0.00091 18.8 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385775633|ref|YP_005648201.1| - 0.0038 16.7 0.0 0.0074 15.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain rve PF00665.21 gi|385775633|ref|YP_005648201.1| - 0.0044 17.1 0.0 0.011 15.8 0.0 1.7 1 1 0 1 1 1 1 Integrase core domain MerR_1 PF13411.1 gi|385775633|ref|YP_005648201.1| - 0.0062 16.2 0.2 0.027 14.2 0.0 2.2 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_33 PF13592.1 gi|385775633|ref|YP_005648201.1| - 0.0067 15.9 0.2 0.067 12.7 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|385775633|ref|YP_005648201.1| - 0.0074 16.2 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DDE_1 PF03184.14 gi|385775633|ref|YP_005648201.1| - 0.0098 15.0 0.0 0.042 12.9 0.0 2.1 1 1 0 1 1 1 1 DDE superfamily endonuclease CENP-B_N PF04218.8 gi|385775633|ref|YP_005648201.1| - 0.013 14.8 0.0 0.038 13.3 0.0 1.8 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain MarR_2 PF12802.2 gi|385775633|ref|YP_005648201.1| - 0.016 14.8 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.17 gi|385775633|ref|YP_005648201.1| - 0.022 14.6 0.0 0.095 12.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_11 PF08279.7 gi|385775633|ref|YP_005648201.1| - 0.025 14.2 0.0 0.1 12.2 0.0 2.1 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|385775633|ref|YP_005648201.1| - 0.025 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma54_DBD PF04552.8 gi|385775633|ref|YP_005648201.1| - 0.03 13.8 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_36 PF13730.1 gi|385775633|ref|YP_005648201.1| - 0.032 14.3 0.0 0.1 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1580 PF07618.6 gi|385775633|ref|YP_005648201.1| - 0.036 13.4 0.0 0.091 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1580) HTH_Crp_2 PF13545.1 gi|385775633|ref|YP_005648201.1| - 0.056 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_terminase PF10668.4 gi|385775633|ref|YP_005648201.1| - 0.058 13.1 0.6 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Phage terminase small subunit HTH_Tnp_4 PF13613.1 gi|385775633|ref|YP_005648201.1| - 0.067 12.7 0.0 0.24 10.9 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MerR PF00376.18 gi|385775633|ref|YP_005648201.1| - 0.089 12.3 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein Sigma70_ECF PF07638.6 gi|385775633|ref|YP_005648201.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 ECF sigma factor HTH_26 PF13443.1 gi|385775633|ref|YP_005648201.1| - 0.1 12.7 0.0 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_30 PF13556.1 gi|385775633|ref|YP_005648201.1| - 0.14 11.7 0.0 0.37 10.3 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF3827 PF12877.2 gi|385775634|ref|YP_005648202.1| - 0.31 9.1 0.6 0.51 8.3 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3827) PTS_EIIC_2 PF13303.1 gi|385775635|ref|YP_005648203.1| - 0.18 10.6 10.5 0.28 9.9 7.3 1.3 1 1 0 1 1 1 0 Phosphotransferase system, EIIC YjgP_YjgQ PF03739.9 gi|385775635|ref|YP_005648203.1| - 0.8 8.3 15.3 1 8.0 10.6 1.2 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family Penicil_amidase PF01804.13 gi|385775636|ref|YP_005648204.1| - 3.4e-207 690.9 0.4 3.8e-207 690.7 0.3 1.0 1 0 0 1 1 1 1 Penicillin amidase NTP_transf_2 PF01909.18 gi|385775637|ref|YP_005648205.1| - 8.9e-12 45.1 1.3 1.2e-11 44.8 0.9 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|385775637|ref|YP_005648205.1| - 0.036 13.6 0.0 0.054 13.1 0.0 1.5 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Adenyl_cycl_N PF12633.2 gi|385775637|ref|YP_005648205.1| - 0.12 11.8 0.0 0.14 11.6 0.0 1.3 1 1 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.9 gi|385775638|ref|YP_005648206.1| - 2.5e-36 124.1 3.9 3e-36 123.8 2.7 1.0 1 0 0 1 1 1 1 HEPN domain ATP-synt_DE PF00401.15 gi|385775638|ref|YP_005648206.1| - 0.038 13.8 7.3 3.1 7.7 0.4 3.2 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DUF4398 PF14346.1 gi|385775638|ref|YP_005648206.1| - 0.16 12.0 3.5 0.47 10.5 1.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) TPR_2 PF07719.12 gi|385775638|ref|YP_005648206.1| - 3.8 7.6 6.5 4.3 7.5 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|385775638|ref|YP_005648206.1| - 3.9 7.4 7.3 6 6.8 1.9 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|385775639|ref|YP_005648207.1| - 2.9e-06 27.5 0.0 3.1e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.9 gi|385775639|ref|YP_005648207.1| - 0.0062 16.4 0.3 0.0076 16.1 0.2 1.1 1 0 0 1 1 1 1 HEPN domain MFS_1 PF07690.11 gi|385775640|ref|YP_005648208.1| - 7.5e-20 70.9 74.7 2.6e-13 49.4 27.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|385775640|ref|YP_005648208.1| - 6 6.9 18.6 0.089 12.8 2.5 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF1228) Sugar_tr PF00083.19 gi|385775641|ref|YP_005648209.1| - 5.6e-51 173.5 19.9 6.6e-51 173.2 13.8 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|385775641|ref|YP_005648209.1| - 3.1e-23 82.0 37.1 2.4e-12 46.2 9.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3154 PF11351.3 gi|385775641|ref|YP_005648209.1| - 0.017 14.8 0.3 0.12 12.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) DUF948 PF06103.6 gi|385775641|ref|YP_005648209.1| - 0.12 12.2 1.7 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Methyltransf_11 PF08241.7 gi|385775642|ref|YP_005648210.1| - 1.1e-14 54.6 0.0 1.6e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385775642|ref|YP_005648210.1| - 2.3e-12 46.7 0.1 4e-12 45.9 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385775642|ref|YP_005648210.1| - 7.9e-12 45.1 0.0 2.5e-11 43.5 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385775642|ref|YP_005648210.1| - 2.9e-09 37.2 0.0 4.9e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385775642|ref|YP_005648210.1| - 1.9e-06 28.1 0.0 5.3e-06 26.7 0.0 1.8 2 1 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|385775642|ref|YP_005648210.1| - 2.1e-06 27.2 0.0 4.9e-06 26.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|385775642|ref|YP_005648210.1| - 2.2e-06 27.6 0.0 3.6e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385775642|ref|YP_005648210.1| - 3.7e-06 27.4 0.0 1.3e-05 25.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|385775642|ref|YP_005648210.1| - 0.00044 19.9 0.0 0.00061 19.4 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.13 gi|385775642|ref|YP_005648210.1| - 0.00082 18.5 0.1 0.0016 17.6 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|385775642|ref|YP_005648210.1| - 0.0055 16.4 0.0 0.0098 15.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|385775642|ref|YP_005648210.1| - 0.076 11.8 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase TPMT PF05724.6 gi|385775642|ref|YP_005648210.1| - 0.12 11.8 0.0 1.3 8.4 0.0 2.0 1 1 1 2 2 2 0 Thiopurine S-methyltransferase (TPMT) Aminotran_1_2 PF00155.16 gi|385775643|ref|YP_005648211.1| - 4.2e-52 177.3 0.0 5.4e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|385775643|ref|YP_005648211.1| - 3e-12 45.9 0.0 4.9e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|385775643|ref|YP_005648211.1| - 2.3e-08 32.7 0.0 3e-08 32.3 0.0 1.3 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|385775643|ref|YP_005648211.1| - 1.9e-07 30.5 0.0 2.4e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Alliinase_C PF04864.8 gi|385775643|ref|YP_005648211.1| - 6.6e-05 21.7 0.1 0.0009 17.9 0.1 2.0 1 1 0 2 2 2 1 Allinase DegT_DnrJ_EryC1 PF01041.12 gi|385775643|ref|YP_005648211.1| - 0.00051 19.1 0.0 0.00077 18.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family PhdYeFM_antitox PF02604.14 gi|385775643|ref|YP_005648211.1| - 0.047 13.2 0.2 0.13 11.8 0.1 1.8 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Aminotran_3 PF00202.16 gi|385775643|ref|YP_005648211.1| - 0.13 11.0 0.0 2.2 7.0 0.0 2.0 2 0 0 2 2 2 0 Aminotransferase class-III Hjc PF01870.13 gi|385775644|ref|YP_005648212.1| - 6.4e-27 92.9 0.0 1e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Endonuc-MspI PF09208.5 gi|385775644|ref|YP_005648212.1| - 0.093 11.7 1.3 0.11 11.5 0.4 1.5 2 0 0 2 2 2 0 Restriction endonuclease MspI Na_Ca_ex PF01699.19 gi|385775646|ref|YP_005648214.1| - 1.3e-32 112.3 30.9 2.6e-20 72.4 9.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF2231 PF09990.4 gi|385775646|ref|YP_005648214.1| - 4.5 7.6 9.4 0.71 10.2 2.2 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2231) AA_permease_2 PF13520.1 gi|385775647|ref|YP_005648215.1| - 4.5e-09 35.3 59.5 6.7e-09 34.7 41.3 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385775647|ref|YP_005648215.1| - 1.3e-07 30.3 54.7 2.1e-06 26.3 37.9 2.8 1 1 0 1 1 1 1 Amino acid permease ABC_tran PF00005.22 gi|385775648|ref|YP_005648216.1| - 1.9e-14 54.1 0.0 5e-14 52.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter TOBE_2 PF08402.5 gi|385775648|ref|YP_005648216.1| - 6.7e-11 42.0 0.1 1.4e-10 40.9 0.1 1.6 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|385775648|ref|YP_005648216.1| - 6.1e-06 26.2 0.4 0.0022 18.0 0.0 3.6 3 0 0 3 3 3 1 TOBE domain AAA_15 PF13175.1 gi|385775648|ref|YP_005648216.1| - 7.1e-05 22.0 0.0 0.00012 21.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|385775648|ref|YP_005648216.1| - 0.0001 22.3 0.1 0.00034 20.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|385775648|ref|YP_005648216.1| - 0.1 11.8 0.3 0.15 11.2 0.2 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Glyco_hydro_15 PF00723.16 gi|385775649|ref|YP_005648217.1| - 7.7e-07 28.0 2.4 5.7e-05 21.8 1.7 2.8 1 1 1 2 2 2 1 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|385775649|ref|YP_005648217.1| - 0.0031 16.2 0.2 0.072 11.7 0.3 2.6 2 1 1 3 3 3 2 Protein of unknown function, DUF608 MFS_1 PF07690.11 gi|385775650|ref|YP_005648218.1| - 2.9e-59 200.5 57.6 1.7e-57 194.7 34.2 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775650|ref|YP_005648218.1| - 1.2e-06 27.3 16.3 1.2e-06 27.3 11.3 3.1 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|385775650|ref|YP_005648218.1| - 0.3 9.1 21.1 0.0036 15.5 5.8 2.3 2 1 0 2 2 2 0 Transmembrane secretion effector CcmD PF04995.9 gi|385775650|ref|YP_005648218.1| - 5 6.9 7.9 0.59 9.9 1.1 2.9 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) HEPN PF05168.9 gi|385775651|ref|YP_005648219.1| - 5.1e-23 81.2 0.2 6e-23 80.9 0.1 1.0 1 0 0 1 1 1 1 HEPN domain DUF2972 PF11186.3 gi|385775651|ref|YP_005648219.1| - 0.1 12.4 1.7 0.18 11.6 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2972) NTP_transf_2 PF01909.18 gi|385775652|ref|YP_005648220.1| - 2.1e-10 40.8 0.8 3.1e-10 40.2 0.6 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DsbD PF02683.10 gi|385775652|ref|YP_005648220.1| - 0.12 11.9 0.0 0.54 9.8 0.0 1.8 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region HAD_2 PF13419.1 gi|385775653|ref|YP_005648221.1| - 2.8e-19 70.0 0.0 1.1e-18 68.1 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385775653|ref|YP_005648221.1| - 3.3e-05 23.4 0.0 6.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|385775653|ref|YP_005648221.1| - 0.13 12.6 0.0 2 8.7 0.0 2.1 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|385775653|ref|YP_005648221.1| - 0.14 11.3 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative Phosphatase OrfB_Zn_ribbon PF07282.6 gi|385775654|ref|YP_005648222.1| - 2.9e-24 84.5 0.1 5.8e-24 83.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|385775654|ref|YP_005648222.1| - 9.3e-21 74.2 3.0 1.2e-20 73.8 2.1 1.1 1 0 0 1 1 1 1 Probable transposase TF_Zn_Ribbon PF08271.7 gi|385775654|ref|YP_005648222.1| - 0.01 15.1 0.1 2.9 7.3 0.0 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|385775654|ref|YP_005648222.1| - 0.03 14.0 0.6 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|385775654|ref|YP_005648222.1| - 0.097 12.4 0.6 4.8 7.0 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|385775654|ref|YP_005648222.1| - 0.098 11.8 2.0 2.7 7.3 2.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|385775654|ref|YP_005648222.1| - 0.11 12.1 0.2 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC DUF1610 PF07754.6 gi|385775654|ref|YP_005648222.1| - 0.34 11.0 0.2 0.34 11.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|385775654|ref|YP_005648222.1| - 3.1 7.6 4.5 7.8 6.3 1.2 2.6 2 1 1 3 3 3 0 Transposase zinc-ribbon domain DUF4322 PF14210.1 gi|385775656|ref|YP_005648224.1| - 3.6e-38 128.8 0.0 8.7e-38 127.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385775656|ref|YP_005648224.1| - 0.003 17.4 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DDE_5 PF13546.1 gi|385775656|ref|YP_005648224.1| - 0.0036 16.1 0.0 0.0072 15.2 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF4143 PF13635.1 gi|385775657|ref|YP_005648225.1| - 2e-10 40.7 0.2 2.8e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Acyl-CoA_dh_1 PF00441.19 gi|385775658|ref|YP_005648226.1| - 1.4e-09 38.2 0.0 9.9e-09 35.4 0.0 2.0 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|385775658|ref|YP_005648226.1| - 0.081 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Lactamase_B PF00753.22 gi|385775659|ref|YP_005648227.1| - 1.4e-24 86.8 0.0 1.6e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385775659|ref|YP_005648227.1| - 5.2e-05 22.8 0.0 8.2e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|385775659|ref|YP_005648227.1| - 0.088 12.5 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HEPN PF05168.9 gi|385775660|ref|YP_005648228.1| - 1.7e-26 92.4 0.4 1.8e-26 92.3 0.3 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|385775661|ref|YP_005648229.1| - 4.1e-09 36.6 0.4 7.3e-09 35.8 0.2 1.6 1 1 1 2 2 2 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|385775661|ref|YP_005648229.1| - 0.082 12.5 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 AAA_14 PF13173.1 gi|385775662|ref|YP_005648230.1| - 1.2e-28 99.5 0.1 1.7e-28 99.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385775662|ref|YP_005648230.1| - 2.7e-08 33.8 1.5 4.2e-05 23.3 1.0 2.2 1 1 0 1 1 1 1 Archaeal ATPase MobB PF03205.9 gi|385775662|ref|YP_005648230.1| - 0.001 18.8 0.1 0.0018 17.9 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|385775662|ref|YP_005648230.1| - 0.001 19.1 0.0 0.027 14.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385775662|ref|YP_005648230.1| - 0.0011 18.9 0.0 0.0071 16.3 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|385775662|ref|YP_005648230.1| - 0.0013 18.2 0.1 0.24 10.8 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain MMR_HSR1 PF01926.18 gi|385775662|ref|YP_005648230.1| - 0.0014 18.5 0.2 0.0021 18.0 0.1 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|385775662|ref|YP_005648230.1| - 0.0026 18.5 0.0 0.0055 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|385775662|ref|YP_005648230.1| - 0.0031 16.3 0.1 0.005 15.6 0.1 1.3 1 1 0 1 1 1 1 ArgK protein AAA_29 PF13555.1 gi|385775662|ref|YP_005648230.1| - 0.011 15.2 0.5 0.16 11.4 0.2 2.5 2 1 0 2 2 2 0 P-loop containing region of AAA domain Miro PF08477.8 gi|385775662|ref|YP_005648230.1| - 0.022 15.2 0.3 0.058 13.8 0.2 1.7 1 1 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|385775662|ref|YP_005648230.1| - 0.022 14.1 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|385775662|ref|YP_005648230.1| - 0.04 14.2 0.0 0.088 13.1 0.0 1.6 1 1 1 2 2 2 0 AAA domain AAA PF00004.24 gi|385775662|ref|YP_005648230.1| - 0.048 13.8 0.0 0.078 13.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.13 gi|385775662|ref|YP_005648230.1| - 0.049 13.1 0.0 0.058 12.8 0.0 1.1 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Dynamin_N PF00350.18 gi|385775662|ref|YP_005648230.1| - 0.052 13.3 0.5 0.065 13.0 0.4 1.4 1 1 0 1 1 1 0 Dynamin family APS_kinase PF01583.15 gi|385775662|ref|YP_005648230.1| - 0.1 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase T2SE PF00437.15 gi|385775662|ref|YP_005648230.1| - 0.12 11.2 0.2 2.1 7.2 0.1 2.0 1 1 1 2 2 2 0 Type II/IV secretion system protein MaoC_dehydratas PF01575.14 gi|385775663|ref|YP_005648231.1| - 4.7e-18 64.7 0.0 6e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|385775663|ref|YP_005648231.1| - 2.8e-09 36.8 0.0 4.7e-09 36.1 0.0 1.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Acyl-CoA_dh_N PF02771.11 gi|385775664|ref|YP_005648232.1| - 9.5e-29 100.2 0.0 1.9e-28 99.3 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|385775664|ref|YP_005648232.1| - 7.3e-19 67.0 0.0 1.4e-18 66.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.19 gi|385775664|ref|YP_005648232.1| - 1.2e-14 54.6 0.7 1.4e-08 34.9 0.1 2.3 1 1 1 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_ox_N PF14749.1 gi|385775664|ref|YP_005648232.1| - 0.00057 20.1 0.0 0.0011 19.2 0.0 1.6 1 1 0 1 1 1 1 Acyl-coenzyme A oxidase N-terminal HpaB_N PF11794.3 gi|385775664|ref|YP_005648232.1| - 0.022 14.1 0.1 0.23 10.8 0.0 2.3 2 1 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal PmbA_TldD PF01523.11 gi|385775665|ref|YP_005648233.1| - 1.2e-34 119.9 0.0 2.5e-34 118.8 0.0 1.6 1 1 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|385775666|ref|YP_005648234.1| - 4.8e-46 157.3 0.5 6.4e-46 156.9 0.3 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Spore_coat_CotO PF14153.1 gi|385775666|ref|YP_005648234.1| - 0.0034 16.8 0.1 0.0054 16.1 0.0 1.2 1 0 0 1 1 1 1 Spore coat protein CotO HTH_AsnC-type PF13404.1 gi|385775667|ref|YP_005648235.1| - 0.12 11.8 0.0 0.33 10.5 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain BNR PF02012.15 gi|385775669|ref|YP_005648237.1| - 0.069 13.0 0.1 0.22 11.4 0.1 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat PSII_BNR PF14870.1 gi|385775669|ref|YP_005648237.1| - 0.08 11.9 0.0 0.18 10.8 0.0 1.5 1 1 0 1 1 1 0 Photosynthesis system II assembly factor YCF48 DUF4322 PF14210.1 gi|385775670|ref|YP_005648238.1| - 3.6e-25 87.2 0.1 9e-25 85.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385775670|ref|YP_005648238.1| - 0.014 15.2 0.0 6.5 6.7 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DDE_Tnp_1 PF01609.16 gi|385775670|ref|YP_005648238.1| - 0.067 12.7 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 Transposase DDE domain Polyketide_cyc2 PF10604.4 gi|385775671|ref|YP_005648239.1| - 0.011 15.8 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport DUF3236 PF11576.3 gi|385775671|ref|YP_005648239.1| - 0.03 13.7 0.0 0.046 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) Amidinotransf PF02274.12 gi|385775672|ref|YP_005648240.1| - 1.8e-61 207.7 0.0 2e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 Amidinotransferase MFS_1 PF07690.11 gi|385775673|ref|YP_005648241.1| - 8e-29 100.4 37.2 8.4e-19 67.4 11.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385775673|ref|YP_005648241.1| - 4.8e-20 71.5 30.9 4.2e-18 65.1 7.9 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|385775673|ref|YP_005648241.1| - 0.00059 18.3 6.0 0.00059 18.3 4.2 3.1 2 2 0 2 2 2 1 MFS/sugar transport protein DUF791 PF05631.9 gi|385775673|ref|YP_005648241.1| - 0.0021 16.8 20.6 0.003 16.3 4.4 2.1 1 1 0 2 2 2 2 Protein of unknown function (DUF791) MFS_3 PF05977.8 gi|385775673|ref|YP_005648241.1| - 0.017 13.3 8.3 0.98 7.4 3.1 2.6 1 1 1 2 2 2 0 Transmembrane secretion effector DcpS_C PF11969.3 gi|385775673|ref|YP_005648241.1| - 0.022 14.9 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 Scavenger mRNA decapping enzyme C-term binding PALP PF00291.20 gi|385775674|ref|YP_005648242.1| - 6.4e-34 117.5 0.0 8.7e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABC_tran PF00005.22 gi|385775675|ref|YP_005648243.1| - 7.7e-33 113.6 0.0 1.2e-32 113.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775675|ref|YP_005648243.1| - 2.5e-14 53.9 1.9 3.7e-10 40.2 0.0 2.5 2 1 0 3 3 2 2 AAA domain SMC_N PF02463.14 gi|385775675|ref|YP_005648243.1| - 6.1e-06 25.6 0.0 0.046 12.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|385775675|ref|YP_005648243.1| - 2.4e-05 23.9 0.0 0.05 13.0 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain IstB_IS21 PF01695.12 gi|385775675|ref|YP_005648243.1| - 5.3e-05 22.7 0.1 0.077 12.4 0.0 2.6 2 1 0 2 2 2 2 IstB-like ATP binding protein UPF0079 PF02367.12 gi|385775675|ref|YP_005648243.1| - 7.4e-05 22.3 0.1 0.00017 21.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_15 PF13175.1 gi|385775675|ref|YP_005648243.1| - 0.00011 21.4 0.7 0.14 11.2 0.0 2.7 2 1 1 3 3 3 2 AAA ATPase domain AAA_16 PF13191.1 gi|385775675|ref|YP_005648243.1| - 0.0003 20.8 0.1 0.0011 19.0 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|385775675|ref|YP_005648243.1| - 0.00044 20.1 0.1 0.0027 17.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775675|ref|YP_005648243.1| - 0.00047 19.6 0.0 0.00091 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385775675|ref|YP_005648243.1| - 0.00061 19.9 1.7 0.006 16.7 1.2 2.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385775675|ref|YP_005648243.1| - 0.00064 18.9 0.0 0.0012 18.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|385775675|ref|YP_005648243.1| - 0.00088 18.7 0.0 0.016 14.6 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|385775675|ref|YP_005648243.1| - 0.0012 19.1 1.3 0.0028 18.0 0.9 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|385775675|ref|YP_005648243.1| - 0.0015 17.4 1.2 0.0046 15.8 0.1 2.1 2 1 1 3 3 3 1 NB-ARC domain AAA PF00004.24 gi|385775675|ref|YP_005648243.1| - 0.0026 17.9 0.2 0.0073 16.5 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|385775675|ref|YP_005648243.1| - 0.0034 17.1 0.0 0.0075 15.9 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|385775675|ref|YP_005648243.1| - 0.0038 17.1 0.1 0.0089 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385775675|ref|YP_005648243.1| - 0.007 16.0 0.3 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|385775675|ref|YP_005648243.1| - 0.0099 15.5 0.2 0.023 14.3 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.1 gi|385775675|ref|YP_005648243.1| - 0.021 14.4 0.0 0.059 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|385775675|ref|YP_005648243.1| - 0.022 14.6 0.0 0.074 12.9 0.0 2.0 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.17 gi|385775675|ref|YP_005648243.1| - 0.031 14.4 0.0 0.21 11.7 0.0 2.2 2 0 0 2 2 2 0 RNA helicase MutS_V PF00488.16 gi|385775675|ref|YP_005648243.1| - 0.042 13.2 0.0 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 MutS domain V NTPase_1 PF03266.10 gi|385775675|ref|YP_005648243.1| - 0.044 13.4 0.7 0.25 11.0 0.1 2.3 2 0 0 2 2 2 0 NTPase Miro PF08477.8 gi|385775675|ref|YP_005648243.1| - 0.049 14.1 0.1 0.14 12.6 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein Zeta_toxin PF06414.7 gi|385775675|ref|YP_005648243.1| - 0.055 12.5 0.1 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|385775675|ref|YP_005648243.1| - 0.055 13.1 0.2 0.25 11.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) PPK2 PF03976.9 gi|385775675|ref|YP_005648243.1| - 0.057 12.7 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_28 PF13521.1 gi|385775675|ref|YP_005648243.1| - 0.078 12.9 0.2 0.27 11.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|385775675|ref|YP_005648243.1| - 0.082 12.6 0.1 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|385775675|ref|YP_005648243.1| - 0.14 11.6 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|385775675|ref|YP_005648243.1| - 0.29 11.9 2.2 0.92 10.3 1.5 2.2 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|385775676|ref|YP_005648244.1| - 7e-12 44.9 35.9 7e-12 44.9 24.9 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|385775676|ref|YP_005648244.1| - 2.5e-07 30.0 37.9 2.5e-07 30.0 26.3 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ATP-synt_J PF04911.7 gi|385775676|ref|YP_005648244.1| - 0.023 14.1 0.0 0.067 12.6 0.0 1.7 1 0 0 1 1 1 0 ATP synthase j chain ABC2_membrane_4 PF12730.2 gi|385775676|ref|YP_005648244.1| - 0.48 9.5 44.4 0.6 9.2 30.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MFS_1 PF07690.11 gi|385775677|ref|YP_005648245.1| - 3.6e-36 124.6 67.1 1.1e-31 109.8 27.0 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Pam17 PF08566.5 gi|385775677|ref|YP_005648245.1| - 0.2 11.3 1.0 0.43 10.2 0.7 1.5 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 MFS_1_like PF12832.2 gi|385775677|ref|YP_005648245.1| - 0.26 11.0 0.1 0.26 11.0 0.0 4.0 4 2 0 4 4 4 0 MFS_1 like family Pro-kuma_activ PF09286.6 gi|385775678|ref|YP_005648246.1| - 2.1e-24 86.1 0.0 4.3e-24 85.1 0.0 1.5 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|385775678|ref|YP_005648246.1| - 3e-08 33.1 2.2 9.5e-08 31.5 1.5 1.8 1 0 0 1 1 1 1 Subtilase family LRR_3 PF07725.7 gi|385775678|ref|YP_005648246.1| - 0.2 11.4 0.0 0.48 10.2 0.0 1.7 1 0 0 1 1 1 0 Leucine Rich Repeat MFS_1 PF07690.11 gi|385775679|ref|YP_005648247.1| - 1.5e-25 89.7 46.6 2.1e-16 59.6 26.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PIG-F PF06699.6 gi|385775679|ref|YP_005648247.1| - 3.6 7.4 9.3 0.15 11.9 1.3 2.5 3 0 0 3 3 3 0 GPI biosynthesis protein family Pig-F Na_H_Exchanger PF00999.16 gi|385775680|ref|YP_005648248.1| - 2e-49 168.1 44.0 2.4e-49 167.8 30.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Vma12 PF11712.3 gi|385775680|ref|YP_005648248.1| - 0.026 14.2 0.9 0.026 14.2 0.6 2.5 3 0 0 3 3 3 0 Endoplasmic reticulum-based factor for assembly of V-ATPase UPF0139 PF03669.8 gi|385775680|ref|YP_005648248.1| - 0.035 13.6 0.2 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0139) Cytochrome-c551 PF10643.4 gi|385775680|ref|YP_005648248.1| - 0.18 11.0 4.7 0.36 10.0 3.3 1.5 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 DUF1129 PF06570.6 gi|385775680|ref|YP_005648248.1| - 3.6 6.8 14.6 2.2 7.5 3.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Thiol_cytolysin PF01289.14 gi|385775681|ref|YP_005648249.1| - 0.018 13.4 1.9 0.02 13.3 1.3 1.0 1 0 0 1 1 1 0 Thiol-activated cytolysin Amidohydro_2 PF04909.9 gi|385775682|ref|YP_005648250.1| - 6.6e-06 25.8 0.0 0.054 13.0 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase CCG PF02754.11 gi|385775683|ref|YP_005648251.1| - 6.4e-30 102.9 0.2 1e-15 57.4 0.0 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|385775684|ref|YP_005648252.1| - 2.2e-10 40.4 7.5 3.3e-10 39.8 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385775684|ref|YP_005648252.1| - 9.2e-10 38.7 4.8 1.5e-09 38.0 3.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385775684|ref|YP_005648252.1| - 8.3e-08 32.3 7.0 1.8e-07 31.2 4.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385775684|ref|YP_005648252.1| - 8.2e-06 26.1 2.9 0.0025 18.1 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385775684|ref|YP_005648252.1| - 1.8e-05 25.0 6.8 3.3e-05 24.1 4.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385775684|ref|YP_005648252.1| - 8.6e-05 23.2 2.1 0.012 16.3 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|385775684|ref|YP_005648252.1| - 0.0006 19.5 11.8 0.0078 15.9 9.0 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385775684|ref|YP_005648252.1| - 0.0027 17.5 9.8 0.24 11.4 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385775684|ref|YP_005648252.1| - 0.025 14.8 12.7 0.57 10.6 1.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385775684|ref|YP_005648252.1| - 0.03 14.1 9.7 0.14 12.0 6.7 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385775684|ref|YP_005648252.1| - 0.096 12.3 12.8 0.16 11.6 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|385775684|ref|YP_005648252.1| - 0.21 11.1 6.7 0.15 11.6 0.3 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|385775684|ref|YP_005648252.1| - 0.23 12.0 2.3 0.92 10.1 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain IZUMO PF15005.1 gi|385775684|ref|YP_005648252.1| - 0.68 9.9 5.0 1.6 8.7 0.6 2.4 2 0 0 2 2 2 0 Izumo sperm-egg fusion Pyr_redox_2 PF07992.9 gi|385775686|ref|YP_005648254.1| - 6.9e-13 48.9 0.0 1.3e-12 47.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385775686|ref|YP_005648254.1| - 2.9e-08 32.5 1.1 0.00046 18.7 0.2 2.1 1 1 1 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|385775686|ref|YP_005648254.1| - 8e-08 31.5 0.6 5e-06 25.6 0.2 2.1 1 1 1 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|385775686|ref|YP_005648254.1| - 2.5e-07 30.9 0.6 0.0039 17.2 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385775686|ref|YP_005648254.1| - 2.7e-07 29.9 0.8 1.9e-06 27.2 0.3 2.1 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|385775686|ref|YP_005648254.1| - 3e-07 29.6 0.1 0.00014 20.8 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|385775686|ref|YP_005648254.1| - 1.6e-06 27.4 0.1 3.4e-06 26.3 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|385775686|ref|YP_005648254.1| - 3.6e-05 22.9 0.3 6.6e-05 22.1 0.2 1.5 1 1 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|385775686|ref|YP_005648254.1| - 3.7e-05 22.8 0.6 0.00035 19.5 0.0 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|385775686|ref|YP_005648254.1| - 9.8e-05 22.3 0.0 0.00024 21.0 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|385775686|ref|YP_005648254.1| - 0.00027 20.1 0.0 0.064 12.3 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|385775686|ref|YP_005648254.1| - 0.00033 20.4 0.2 0.22 11.2 0.0 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|385775686|ref|YP_005648254.1| - 0.00039 20.7 0.5 0.017 15.4 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|385775686|ref|YP_005648254.1| - 0.0024 16.8 0.0 0.0031 16.4 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|385775686|ref|YP_005648254.1| - 0.005 16.9 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_7 PF13241.1 gi|385775686|ref|YP_005648254.1| - 0.014 15.6 0.2 0.056 13.7 0.1 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.16 gi|385775686|ref|YP_005648254.1| - 0.033 14.0 0.3 0.096 12.5 0.0 1.8 2 0 0 2 2 2 0 ThiF family IlvN PF07991.7 gi|385775686|ref|YP_005648254.1| - 0.037 13.3 0.2 0.082 12.2 0.1 1.7 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|385775686|ref|YP_005648254.1| - 0.039 14.0 0.3 0.081 13.0 0.2 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|385775686|ref|YP_005648254.1| - 0.066 12.7 0.5 0.81 9.2 0.1 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain CCG PF02754.11 gi|385775687|ref|YP_005648255.1| - 2e-08 34.0 0.0 1e-06 28.6 0.0 2.9 2 1 0 2 2 2 1 Cysteine-rich domain Fer4_8 PF13183.1 gi|385775688|ref|YP_005648256.1| - 5.1e-10 39.2 6.5 9.1e-10 38.4 4.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385775688|ref|YP_005648256.1| - 7.6e-09 35.7 6.7 7.6e-09 35.7 4.7 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385775688|ref|YP_005648256.1| - 5e-06 26.6 8.7 1.1e-05 25.6 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385775688|ref|YP_005648256.1| - 7e-06 26.3 2.4 0.1 13.0 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385775688|ref|YP_005648256.1| - 2e-05 24.2 8.3 0.0061 16.4 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385775688|ref|YP_005648256.1| - 4.3e-05 23.2 9.5 0.00011 21.9 6.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385775688|ref|YP_005648256.1| - 0.00038 20.7 9.8 0.0041 17.4 7.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385775688|ref|YP_005648256.1| - 0.0014 18.7 11.1 0.0024 18.0 0.8 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385775688|ref|YP_005648256.1| - 0.009 15.8 8.0 0.071 12.9 5.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385775688|ref|YP_005648256.1| - 0.013 16.2 9.5 0.066 13.9 6.7 2.1 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|385775688|ref|YP_005648256.1| - 0.044 13.3 6.1 0.095 12.3 0.3 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|385775688|ref|YP_005648256.1| - 0.28 10.8 16.9 0.12 11.9 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385775688|ref|YP_005648256.1| - 0.54 10.2 13.0 2.6 8.0 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|385775688|ref|YP_005648256.1| - 3.2 8.2 9.3 2.5 8.5 0.2 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain TusA PF01206.12 gi|385775689|ref|YP_005648257.1| - 2.2e-25 88.0 0.0 2.6e-25 87.8 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|385775689|ref|YP_005648257.1| - 0.0065 16.0 0.0 0.017 14.6 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) SH3_3 PF08239.6 gi|385775689|ref|YP_005648257.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial SH3 domain DrsE_2 PF13686.1 gi|385775690|ref|YP_005648258.1| - 1.9e-29 102.3 0.1 2.7e-29 101.8 0.1 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|385775690|ref|YP_005648258.1| - 1.2e-07 31.7 0.0 5e-07 29.8 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.10 gi|385775691|ref|YP_005648259.1| - 1.7e-18 66.8 0.0 1.9e-18 66.6 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|385775691|ref|YP_005648259.1| - 1.8e-15 57.0 1.1 6e-07 29.3 0.2 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family Pyr_redox_2 PF07992.9 gi|385775692|ref|YP_005648260.1| - 2.8e-27 95.8 7.8 1.5e-26 93.5 5.4 3.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385775692|ref|YP_005648260.1| - 6.5e-20 71.3 6.1 2.3e-15 56.7 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|385775692|ref|YP_005648260.1| - 1.6e-15 57.0 0.0 2.8e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|385775692|ref|YP_005648260.1| - 2.8e-11 43.8 0.0 1.5e-10 41.4 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|385775692|ref|YP_005648260.1| - 7.3e-11 41.5 3.8 6.5e-06 25.2 0.1 2.8 3 1 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.19 gi|385775692|ref|YP_005648260.1| - 5.1e-09 35.5 13.1 0.00087 18.2 1.8 3.4 4 0 0 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385775692|ref|YP_005648260.1| - 1.9e-08 33.2 3.0 0.00025 19.6 0.6 3.7 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|385775692|ref|YP_005648260.1| - 8.5e-08 31.6 1.0 6.7e-05 22.1 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.9 gi|385775692|ref|YP_005648260.1| - 1.2e-07 30.7 1.3 3.9e-06 25.7 0.2 2.1 2 0 0 2 2 2 1 Tryptophan halogenase FAD_oxidored PF12831.2 gi|385775692|ref|YP_005648260.1| - 2e-07 30.4 0.8 3.5e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385775692|ref|YP_005648260.1| - 3e-07 29.6 9.6 1.9e-06 26.9 1.4 3.2 3 1 0 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|385775692|ref|YP_005648260.1| - 3.2e-05 23.5 0.2 0.021 14.3 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.12 gi|385775692|ref|YP_005648260.1| - 5.3e-05 22.4 5.9 0.00012 21.2 0.3 2.8 3 0 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.1 gi|385775692|ref|YP_005648260.1| - 0.00012 21.9 6.9 0.0026 17.7 1.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|385775692|ref|YP_005648260.1| - 0.00016 20.7 1.2 0.025 13.5 0.0 2.6 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|385775692|ref|YP_005648260.1| - 0.00024 21.3 0.2 0.83 9.9 0.0 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|385775692|ref|YP_005648260.1| - 0.00059 19.6 0.0 1.2 8.8 0.0 2.6 3 0 0 3 3 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|385775692|ref|YP_005648260.1| - 0.00063 19.4 1.5 0.28 10.8 0.0 2.2 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|385775692|ref|YP_005648260.1| - 0.0022 16.9 0.7 1.4 7.7 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein GDI PF00996.13 gi|385775692|ref|YP_005648260.1| - 0.0058 15.0 1.0 0.0062 14.8 0.1 1.4 2 0 0 2 2 2 1 GDP dissociation inhibitor UDPG_MGDP_dh_N PF03721.9 gi|385775692|ref|YP_005648260.1| - 0.0092 15.3 4.0 0.34 10.2 0.4 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|385775692|ref|YP_005648260.1| - 0.024 14.6 2.1 0.96 9.4 0.5 2.7 2 0 0 2 2 2 0 TrkA-N domain XdhC_C PF13478.1 gi|385775692|ref|YP_005648260.1| - 0.064 13.5 0.1 0.19 12.0 0.0 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_10 PF13460.1 gi|385775692|ref|YP_005648260.1| - 0.13 12.2 0.0 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 NADH(P)-binding Myosin_N PF02736.14 gi|385775692|ref|YP_005648260.1| - 0.18 11.5 2.6 0.18 11.4 0.2 2.3 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain ApbA PF02558.11 gi|385775692|ref|YP_005648260.1| - 0.23 10.8 1.9 20 4.6 0.6 3.1 4 0 0 4 4 4 0 Ketopantoate reductase PanE/ApbA Thioredoxin_3 PF13192.1 gi|385775694|ref|YP_005648262.1| - 5.2e-16 58.2 0.1 9e-16 57.4 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.15 gi|385775694|ref|YP_005648262.1| - 0.0031 17.1 0.1 0.0065 16.1 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_9 PF14595.1 gi|385775694|ref|YP_005648262.1| - 0.02 14.4 0.1 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin Glutaredoxin PF00462.19 gi|385775694|ref|YP_005648262.1| - 0.022 14.7 0.6 0.056 13.4 0.4 1.7 1 0 0 1 1 1 0 Glutaredoxin DUF836 PF05768.9 gi|385775694|ref|YP_005648262.1| - 0.026 14.7 0.2 0.84 9.9 0.0 2.2 2 0 0 2 2 2 0 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|385775694|ref|YP_005648262.1| - 0.084 13.0 1.0 0.69 10.1 0.5 2.2 1 1 0 1 1 1 0 Thioredoxin-like domain DUF4411 PF14367.1 gi|385775694|ref|YP_005648262.1| - 0.085 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) UPF0278 PF08745.6 gi|385775695|ref|YP_005648263.1| - 0.011 15.0 0.1 0.016 14.4 0.1 1.2 1 0 0 1 1 1 0 UPF0278 family Gar1 PF04410.9 gi|385775695|ref|YP_005648263.1| - 0.13 11.7 0.0 9.1 5.7 0.0 2.2 2 0 0 2 2 2 0 Gar1/Naf1 RNA binding region Lipase_3 PF01764.20 gi|385775695|ref|YP_005648263.1| - 0.14 11.7 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) DUF1641 PF07849.6 gi|385775696|ref|YP_005648264.1| - 4.6e-13 48.5 0.2 2.3e-12 46.3 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) MgtE_N PF03448.12 gi|385775696|ref|YP_005648264.1| - 1.2e-05 25.5 30.9 0.017 15.4 1.8 5.9 2 1 4 6 6 6 6 MgtE intracellular N domain INTS5_N PF14837.1 gi|385775696|ref|YP_005648264.1| - 2.2 7.6 9.4 1.4 8.2 0.8 3.2 1 1 1 3 3 3 0 Integrator complex subunit 5 N-terminus Birna_VP3 PF01767.11 gi|385775696|ref|YP_005648264.1| - 5.6 6.5 13.3 9.5 5.7 0.1 3.9 1 1 1 4 4 4 0 Birnavirus VP3 protein Hist_deacetyl PF00850.14 gi|385775697|ref|YP_005648265.1| - 4.3e-55 187.1 0.0 5.7e-55 186.7 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Peptidase_M23 PF01551.17 gi|385775698|ref|YP_005648266.1| - 8.1e-06 25.8 0.0 3.3e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M23 RnfC_N PF13375.1 gi|385775698|ref|YP_005648266.1| - 0.12 12.1 0.0 1.6 8.5 0.0 2.2 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Radical_SAM PF04055.16 gi|385775699|ref|YP_005648267.1| - 2.6e-12 47.2 0.4 1.2e-11 45.1 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385775699|ref|YP_005648267.1| - 0.008 16.3 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|385775700|ref|YP_005648268.1| - 1.2e-14 54.8 0.0 4.3e-13 49.7 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385775700|ref|YP_005648268.1| - 0.011 15.8 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain BATS PF06968.8 gi|385775700|ref|YP_005648268.1| - 0.056 13.2 0.1 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain BPL_LplA_LipB PF03099.14 gi|385775701|ref|YP_005648269.1| - 2.4e-13 50.1 0.0 3.9e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.4 gi|385775701|ref|YP_005648269.1| - 0.00061 19.4 0.1 0.0015 18.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus CoA_binding_2 PF13380.1 gi|385775702|ref|YP_005648270.1| - 2.9e-35 120.9 0.1 3.4e-35 120.6 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|385775702|ref|YP_005648270.1| - 5.5e-06 26.7 0.0 8.8e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain TrmB PF01978.14 gi|385775703|ref|YP_005648271.1| - 5e-10 38.9 0.1 6.7e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|385775703|ref|YP_005648271.1| - 6.1e-07 29.0 0.1 8.5e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|385775703|ref|YP_005648271.1| - 3.6e-06 26.5 0.0 4.7e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385775703|ref|YP_005648271.1| - 4.7e-06 26.8 0.0 6.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|385775703|ref|YP_005648271.1| - 5.2e-06 25.9 0.1 8.3e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|385775703|ref|YP_005648271.1| - 5.2e-05 22.9 0.0 8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|385775703|ref|YP_005648271.1| - 7.8e-05 22.2 0.1 0.00014 21.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|385775703|ref|YP_005648271.1| - 8e-05 21.9 0.2 0.00013 21.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|385775703|ref|YP_005648271.1| - 0.00011 22.0 0.1 0.0002 21.1 0.0 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.8 gi|385775703|ref|YP_005648271.1| - 0.00018 21.0 0.0 0.00071 19.0 0.0 1.9 1 1 0 1 1 1 1 Replication protein C N-terminal domain HTH_36 PF13730.1 gi|385775703|ref|YP_005648271.1| - 0.00039 20.5 0.1 0.00062 19.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|385775703|ref|YP_005648271.1| - 0.0006 19.2 0.1 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|385775703|ref|YP_005648271.1| - 0.0011 18.7 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF4423 PF14394.1 gi|385775703|ref|YP_005648271.1| - 0.0013 18.3 0.1 0.0024 17.4 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.12 gi|385775703|ref|YP_005648271.1| - 0.0038 16.7 0.1 0.0043 16.5 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HrcA_DNA-bdg PF03444.10 gi|385775703|ref|YP_005648271.1| - 0.0067 15.8 0.1 0.0096 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding FeoC PF09012.5 gi|385775703|ref|YP_005648271.1| - 0.0075 15.9 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|385775703|ref|YP_005648271.1| - 0.0081 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain RuvB_C PF05491.8 gi|385775703|ref|YP_005648271.1| - 0.01 15.4 0.1 0.017 14.7 0.1 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus Rio2_N PF09202.6 gi|385775703|ref|YP_005648271.1| - 0.015 15.3 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal EAP30 PF04157.11 gi|385775703|ref|YP_005648271.1| - 0.015 14.4 0.1 0.02 14.0 0.1 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_10 PF04967.7 gi|385775703|ref|YP_005648271.1| - 0.018 14.5 0.1 0.036 13.6 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|385775703|ref|YP_005648271.1| - 0.021 14.9 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|385775703|ref|YP_005648271.1| - 0.023 14.2 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Phage_rep_O PF04492.8 gi|385775703|ref|YP_005648271.1| - 0.027 14.6 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O B-block_TFIIIC PF04182.7 gi|385775703|ref|YP_005648271.1| - 0.032 14.0 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Pox_Rap94 PF03294.9 gi|385775703|ref|YP_005648271.1| - 0.064 11.2 0.0 0.065 11.1 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase-associated transcription specificity factor, Rap94 Phage_rep_org_N PF09681.5 gi|385775703|ref|YP_005648271.1| - 0.065 12.7 0.1 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF387 PF04079.11 gi|385775703|ref|YP_005648271.1| - 0.071 12.4 0.1 0.11 11.8 0.1 1.3 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) DUF2250 PF10007.4 gi|385775703|ref|YP_005648271.1| - 0.1 12.5 0.1 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.1 gi|385775703|ref|YP_005648271.1| - 0.12 12.4 0.1 0.2 11.7 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain DDRGK PF09756.4 gi|385775703|ref|YP_005648271.1| - 0.12 11.8 0.2 0.15 11.4 0.2 1.1 1 0 0 1 1 1 0 DDRGK domain DUF746 PF05344.6 gi|385775703|ref|YP_005648271.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) TusA PF01206.12 gi|385775704|ref|YP_005648272.1| - 9.1e-11 41.2 0.1 1.1e-10 41.0 0.1 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA YHS PF04945.8 gi|385775705|ref|YP_005648273.1| - 3.1e-08 33.3 0.4 3.8e-08 33.0 0.3 1.2 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|385775705|ref|YP_005648273.1| - 0.12 12.0 0.6 0.18 11.4 0.4 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-C2HC_2 PF13913.1 gi|385775705|ref|YP_005648273.1| - 0.21 11.3 0.1 0.21 11.3 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TrmB PF01978.14 gi|385775706|ref|YP_005648274.1| - 4.2e-16 58.4 0.0 5.5e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385775706|ref|YP_005648274.1| - 6.9e-12 44.8 0.0 9.1e-12 44.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|385775706|ref|YP_005648274.1| - 1.8e-10 40.3 0.0 2.5e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385775706|ref|YP_005648274.1| - 1.5e-07 30.6 0.0 2.1e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385775706|ref|YP_005648274.1| - 1.6e-06 28.2 0.0 2.3e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|385775706|ref|YP_005648274.1| - 2.7e-06 26.8 0.0 3.4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|385775706|ref|YP_005648274.1| - 0.0001 21.8 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|385775706|ref|YP_005648274.1| - 0.00057 19.4 0.0 0.00093 18.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|385775706|ref|YP_005648274.1| - 0.0006 19.6 0.0 0.00093 19.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|385775706|ref|YP_005648274.1| - 0.0006 19.3 0.0 0.00085 18.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Mga PF05043.8 gi|385775706|ref|YP_005648274.1| - 0.00067 19.8 0.0 0.001 19.3 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_29 PF13551.1 gi|385775706|ref|YP_005648274.1| - 0.0025 17.9 0.0 0.0031 17.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_20 PF12840.2 gi|385775706|ref|YP_005648274.1| - 0.0031 17.2 0.0 0.0047 16.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|385775706|ref|YP_005648274.1| - 0.0039 16.7 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|385775706|ref|YP_005648274.1| - 0.006 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|385775706|ref|YP_005648274.1| - 0.0073 16.0 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_9 PF08221.6 gi|385775706|ref|YP_005648274.1| - 0.0075 16.1 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_34 PF13601.1 gi|385775706|ref|YP_005648274.1| - 0.0088 16.0 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|385775706|ref|YP_005648274.1| - 0.01 15.3 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Replic_Relax PF13814.1 gi|385775706|ref|YP_005648274.1| - 0.012 15.4 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_36 PF13730.1 gi|385775706|ref|YP_005648274.1| - 0.013 15.5 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|385775706|ref|YP_005648274.1| - 0.016 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RP-C PF03428.8 gi|385775706|ref|YP_005648274.1| - 0.033 13.6 0.1 1.1 8.6 0.1 2.0 1 1 0 1 1 1 0 Replication protein C N-terminal domain Syntaxin-6_N PF09177.6 gi|385775707|ref|YP_005648275.1| - 0.06 13.7 0.2 0.19 12.1 0.1 1.8 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF4319 PF14203.1 gi|385775707|ref|YP_005648275.1| - 0.088 12.3 1.7 0.21 11.1 1.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4319) DUF2971 PF11185.3 gi|385775707|ref|YP_005648275.1| - 0.092 13.4 0.1 0.14 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2971) HAD_2 PF13419.1 gi|385775708|ref|YP_005648276.1| - 0.0025 18.0 0.0 0.003 17.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Sulfotransfer_1 PF00685.22 gi|385775708|ref|YP_005648276.1| - 0.11 11.7 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Sulfotransferase domain GCV_H PF01597.14 gi|385775709|ref|YP_005648277.1| - 9.6e-30 102.7 0.4 1.1e-29 102.5 0.3 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|385775709|ref|YP_005648277.1| - 0.013 15.0 0.2 0.02 14.5 0.1 1.3 1 0 0 1 1 1 0 Biotin-requiring enzyme UB2H PF14814.1 gi|385775709|ref|YP_005648277.1| - 0.022 14.4 0.0 0.088 12.5 0.0 1.9 2 0 0 2 2 2 0 Bifunctional transglycosylase second domain MFS_1 PF07690.11 gi|385775711|ref|YP_005648279.1| - 4.8e-36 124.2 49.6 4.8e-36 124.2 34.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Vps39_2 PF10367.4 gi|385775712|ref|YP_005648280.1| - 0.015 15.4 1.6 0.018 15.1 1.1 1.1 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 Chlam_vir PF05475.6 gi|385775712|ref|YP_005648280.1| - 0.019 14.1 0.1 0.021 13.9 0.1 1.1 1 0 0 1 1 1 0 Chlamydia virulence protein PGP3-D TrmB PF01978.14 gi|385775713|ref|YP_005648281.1| - 4.6e-15 55.0 0.3 8e-15 54.3 0.2 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|385775713|ref|YP_005648281.1| - 6.6e-14 51.2 0.9 7.7e-14 51.0 0.7 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|385775713|ref|YP_005648281.1| - 1.2e-11 44.0 0.1 2.1e-11 43.3 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|385775713|ref|YP_005648281.1| - 2e-11 43.3 0.0 3.1e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385775713|ref|YP_005648281.1| - 1.5e-09 37.0 0.6 2.6e-09 36.3 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385775713|ref|YP_005648281.1| - 1.6e-09 37.9 0.5 2.6e-09 37.2 0.1 1.5 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|385775713|ref|YP_005648281.1| - 7.6e-07 29.0 0.1 1.5e-06 28.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|385775713|ref|YP_005648281.1| - 1.8e-06 27.3 0.1 3.6e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|385775713|ref|YP_005648281.1| - 5.3e-06 25.9 0.3 9.5e-06 25.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|385775713|ref|YP_005648281.1| - 3e-05 23.8 0.0 5.3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|385775713|ref|YP_005648281.1| - 3.7e-05 23.7 0.3 5.5e-05 23.2 0.2 1.5 1 1 0 1 1 1 1 Penicillinase repressor HTH_11 PF08279.7 gi|385775713|ref|YP_005648281.1| - 5.5e-05 22.7 0.1 9.1e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|385775713|ref|YP_005648281.1| - 6.6e-05 22.6 0.0 0.00058 19.6 0.0 2.1 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|385775713|ref|YP_005648281.1| - 7.6e-05 22.0 0.1 0.00056 19.3 0.0 2.1 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|385775713|ref|YP_005648281.1| - 0.00055 19.6 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.6 gi|385775713|ref|YP_005648281.1| - 0.00067 19.3 0.3 0.0012 18.5 0.2 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain EAP30 PF04157.11 gi|385775713|ref|YP_005648281.1| - 0.0019 17.4 0.8 0.0069 15.5 0.0 1.9 2 0 0 2 2 2 1 EAP30/Vps36 family DUF387 PF04079.11 gi|385775713|ref|YP_005648281.1| - 0.0028 17.0 0.2 0.0042 16.4 0.1 1.4 1 1 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_19 PF12844.2 gi|385775713|ref|YP_005648281.1| - 0.0029 17.6 0.2 0.006 16.6 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain DUF4393 PF14337.1 gi|385775713|ref|YP_005648281.1| - 0.0031 16.9 0.1 0.004 16.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4393) Sulfolobus_pRN PF05584.6 gi|385775713|ref|YP_005648281.1| - 0.0036 17.2 0.1 0.007 16.3 0.1 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein Replic_Relax PF13814.1 gi|385775713|ref|YP_005648281.1| - 0.0036 17.1 0.1 0.0041 17.0 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_9 PF08221.6 gi|385775713|ref|YP_005648281.1| - 0.0048 16.7 0.2 0.0099 15.7 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|385775713|ref|YP_005648281.1| - 0.0053 16.2 0.0 0.0089 15.5 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain FeoC PF09012.5 gi|385775713|ref|YP_005648281.1| - 0.0058 16.3 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 FeoC like transcriptional regulator RuvB_C PF05491.8 gi|385775713|ref|YP_005648281.1| - 0.006 16.1 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus DUF977 PF06163.6 gi|385775713|ref|YP_005648281.1| - 0.01 15.5 0.0 0.012 15.3 0.0 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Cullin_Nedd8 PF10557.4 gi|385775713|ref|YP_005648281.1| - 0.011 15.4 0.1 0.025 14.3 0.0 1.6 2 0 0 2 2 1 0 Cullin protein neddylation domain z-alpha PF02295.12 gi|385775713|ref|YP_005648281.1| - 0.012 15.3 0.1 0.021 14.6 0.1 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF4423 PF14394.1 gi|385775713|ref|YP_005648281.1| - 0.013 15.0 0.3 0.022 14.3 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HxlR PF01638.12 gi|385775713|ref|YP_005648281.1| - 0.018 14.6 0.1 0.031 13.8 0.1 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix CHD5 PF04420.9 gi|385775713|ref|YP_005648281.1| - 0.02 14.5 0.6 0.027 14.1 0.4 1.1 1 0 0 1 1 1 0 CHD5-like protein B-block_TFIIIC PF04182.7 gi|385775713|ref|YP_005648281.1| - 0.024 14.4 0.0 0.051 13.4 0.0 1.4 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_36 PF13730.1 gi|385775713|ref|YP_005648281.1| - 0.025 14.6 0.2 0.057 13.5 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|385775713|ref|YP_005648281.1| - 0.026 14.6 0.1 0.044 13.8 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator Phage_rep_org_N PF09681.5 gi|385775713|ref|YP_005648281.1| - 0.029 13.9 0.1 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_10 PF04967.7 gi|385775713|ref|YP_005648281.1| - 0.039 13.5 0.0 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain Cullin PF00888.17 gi|385775713|ref|YP_005648281.1| - 0.04 12.4 0.9 0.11 11.0 0.2 1.7 1 1 1 2 2 2 0 Cullin family HTH_IclR PF09339.5 gi|385775713|ref|YP_005648281.1| - 0.042 13.4 0.0 0.074 12.6 0.0 1.4 1 1 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|385775713|ref|YP_005648281.1| - 0.043 13.7 0.6 0.07 13.0 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_38 PF13936.1 gi|385775713|ref|YP_005648281.1| - 0.059 12.9 0.0 0.14 11.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2551 PF10826.3 gi|385775713|ref|YP_005648281.1| - 0.06 13.2 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) RPA_C PF08784.6 gi|385775713|ref|YP_005648281.1| - 0.083 13.3 0.1 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal PadR PF03551.9 gi|385775713|ref|YP_005648281.1| - 0.1 12.3 0.2 0.21 11.3 0.1 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DNA_topoisoIV PF00521.15 gi|385775714|ref|YP_005648282.1| - 0.0011 17.9 2.9 0.0011 17.8 2.0 1.0 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A YqzE PF14038.1 gi|385775714|ref|YP_005648282.1| - 4.3 7.1 7.1 0.47 10.2 1.4 1.9 2 0 0 2 2 2 0 YqzE-like protein FUN14 PF04930.10 gi|385775715|ref|YP_005648283.1| - 0.02 15.1 10.9 0.18 12.0 7.6 2.0 1 1 0 1 1 1 0 FUN14 family Oxidored_q2 PF00420.19 gi|385775715|ref|YP_005648283.1| - 0.062 12.9 10.3 0.086 12.4 7.2 1.3 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YuiB PF14068.1 gi|385775715|ref|YP_005648283.1| - 0.068 13.4 11.0 0.11 12.8 7.6 1.3 1 1 0 1 1 1 0 Putative membrane protein DUF2798 PF11391.3 gi|385775715|ref|YP_005648283.1| - 0.12 12.0 0.2 0.12 12.0 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2798) O-antigen_lig PF13425.1 gi|385775715|ref|YP_005648283.1| - 0.14 12.1 10.2 0.18 11.7 7.1 1.3 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF4131 PF13567.1 gi|385775715|ref|YP_005648283.1| - 0.38 10.1 2.2 0.41 10.0 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3273 PF11677.3 gi|385775715|ref|YP_005648283.1| - 0.4 9.8 2.7 0.48 9.6 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3273) Bax1-I PF01027.15 gi|385775715|ref|YP_005648283.1| - 0.68 9.4 12.0 1.2 8.6 8.3 1.4 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF1616 PF07760.6 gi|385775715|ref|YP_005648283.1| - 0.82 8.7 12.6 0.97 8.5 8.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) ABC2_membrane_4 PF12730.2 gi|385775715|ref|YP_005648283.1| - 0.83 8.7 17.6 1 8.4 12.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|385775715|ref|YP_005648283.1| - 1.3 8.0 13.8 1.6 7.7 9.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MtrC PF04211.8 gi|385775715|ref|YP_005648283.1| - 2.8 6.9 11.8 0.58 9.1 4.7 1.9 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C PrgI PF12666.2 gi|385775715|ref|YP_005648283.1| - 3.5 7.8 10.0 0.26 11.4 3.3 1.7 1 1 0 2 2 2 0 PrgI family protein DUF1275 PF06912.6 gi|385775715|ref|YP_005648283.1| - 4 6.5 9.8 2.4 7.2 4.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1275) SdpI PF13630.1 gi|385775715|ref|YP_005648283.1| - 4.2 7.1 20.6 11 5.8 10.3 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family MFS_Mycoplasma PF07672.8 gi|385775715|ref|YP_005648283.1| - 5.2 6.1 11.0 0.69 9.0 3.1 1.9 1 1 1 2 2 2 0 Mycoplasma MFS transporter DUF2258 PF10015.4 gi|385775716|ref|YP_005648284.1| - 6.1e-32 109.2 1.8 6.1e-32 109.2 1.3 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) DivIVA PF05103.8 gi|385775716|ref|YP_005648284.1| - 0.00035 20.6 4.7 0.028 14.4 0.9 2.4 2 1 0 2 2 2 2 DivIVA protein Uso1_p115_C PF04871.8 gi|385775716|ref|YP_005648284.1| - 0.0027 17.6 5.8 0.23 11.3 3.1 2.1 1 1 1 2 2 2 1 Uso1 / p115 like vesicle tethering protein, C terminal region Nnf1 PF03980.9 gi|385775716|ref|YP_005648284.1| - 0.0055 16.6 2.9 0.031 14.2 0.8 2.3 1 1 1 2 2 2 1 Nnf1 TPR_MLP1_2 PF07926.7 gi|385775716|ref|YP_005648284.1| - 0.032 13.9 1.8 0.032 13.9 1.2 2.3 3 0 0 3 3 3 0 TPR/MLP1/MLP2-like protein HALZ PF02183.13 gi|385775716|ref|YP_005648284.1| - 0.032 13.9 1.7 0.083 12.6 1.2 1.7 1 0 0 1 1 1 0 Homeobox associated leucine zipper Kinesin-related PF06548.6 gi|385775716|ref|YP_005648284.1| - 0.17 10.3 7.6 0.17 10.3 2.7 1.9 1 1 1 2 2 2 0 Kinesin-related PUB PF09409.5 gi|385775716|ref|YP_005648284.1| - 0.19 11.5 3.4 0.12 12.1 1.2 1.6 2 0 0 2 2 2 0 PUB domain AATF-Che1 PF13339.1 gi|385775716|ref|YP_005648284.1| - 0.31 11.2 3.8 1.7 8.8 0.5 2.3 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Flu_B_M2 PF04772.7 gi|385775716|ref|YP_005648284.1| - 0.38 10.8 2.4 1.6 8.8 0.5 2.1 1 1 1 2 2 2 0 Influenza B matrix protein 2 (BM2) DUF2175 PF09943.4 gi|385775716|ref|YP_005648284.1| - 0.38 10.8 4.6 0.39 10.7 1.9 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) TMF_TATA_bd PF12325.3 gi|385775716|ref|YP_005648284.1| - 0.71 9.6 7.7 1.6 8.4 2.8 2.5 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Kinetocho_Slk19 PF12709.2 gi|385775716|ref|YP_005648284.1| - 1.4 9.0 7.2 0.65 10.1 0.7 2.7 3 1 0 3 3 3 0 Central kinetochore-associated DUF904 PF06005.7 gi|385775716|ref|YP_005648284.1| - 3.5 7.9 9.6 2.3 8.5 4.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF904) Pox_A_type_inc PF04508.7 gi|385775716|ref|YP_005648284.1| - 3.8 7.5 13.6 0.65 9.9 2.3 3.4 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat NTP_transf_2 PF01909.18 gi|385775717|ref|YP_005648285.1| - 0.015 15.5 0.0 0.034 14.4 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain Aconitase PF00330.15 gi|385775718|ref|YP_005648286.1| - 1.2e-125 419.6 0.0 2.3e-125 418.7 0.0 1.4 2 0 0 2 2 2 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|385775718|ref|YP_005648286.1| - 5e-33 114.0 0.0 1e-32 112.9 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF402 PF04167.8 gi|385775719|ref|YP_005648287.1| - 4.8e-18 64.7 2.3 9.9e-18 63.7 1.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|385775719|ref|YP_005648287.1| - 4.9e-06 25.9 0.1 9.6e-06 25.0 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease E/G family RVT_2 PF07727.9 gi|385775720|ref|YP_005648288.1| - 0.058 12.3 0.4 0.074 12.0 0.3 1.2 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) VWA_2 PF13519.1 gi|385775721|ref|YP_005648289.1| - 6.4e-19 68.7 0.3 2.1e-18 67.0 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|385775721|ref|YP_005648289.1| - 1.7e-17 63.6 1.8 2.1e-17 63.3 0.1 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|385775721|ref|YP_005648289.1| - 2.6e-08 33.7 0.0 1e-07 31.8 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|385775721|ref|YP_005648289.1| - 2.4e-07 30.1 0.0 5.4e-07 28.9 0.0 1.5 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|385775721|ref|YP_005648289.1| - 0.00064 19.7 0.1 0.0025 17.8 0.0 2.0 3 0 0 3 3 3 1 VWA-like domain (DUF2201) vWA-TerF-like PF10138.4 gi|385775721|ref|YP_005648289.1| - 0.00069 19.4 0.7 0.0064 16.3 0.0 2.8 2 1 1 3 3 3 1 vWA found in TerF C terminus Metallophos PF00149.23 gi|385775722|ref|YP_005648290.1| - 2e-25 89.3 0.5 2.5e-25 89.0 0.4 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|385775722|ref|YP_005648290.1| - 1.1e-07 31.8 0.0 1.3e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain FHA PF00498.21 gi|385775723|ref|YP_005648291.1| - 2.1e-18 66.1 0.0 3.6e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 FHA domain zf-ribbon_3 PF13248.1 gi|385775723|ref|YP_005648291.1| - 6.1e-07 28.4 1.0 1.1e-06 27.6 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385775723|ref|YP_005648291.1| - 2.5e-06 26.7 3.5 4.1e-06 26.0 2.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|385775723|ref|YP_005648291.1| - 6e-06 25.2 1.3 9.2e-06 24.6 0.9 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.2 gi|385775723|ref|YP_005648291.1| - 9.5e-05 22.1 2.2 0.00015 21.4 1.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-tcix PF14952.1 gi|385775723|ref|YP_005648291.1| - 0.06 12.6 1.0 0.13 11.6 0.7 1.5 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding DUF2318 PF10080.4 gi|385775723|ref|YP_005648291.1| - 0.12 12.1 0.4 0.22 11.2 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Prok-RING_1 PF14446.1 gi|385775723|ref|YP_005648291.1| - 0.12 12.0 1.1 0.19 11.4 0.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 FYDLN_acid PF09538.5 gi|385775723|ref|YP_005648291.1| - 0.38 11.3 3.6 0.75 10.3 2.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) PAT1 PF09770.4 gi|385775723|ref|YP_005648291.1| - 0.38 8.9 13.6 0.45 8.6 9.5 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 A2L_zn_ribbon PF08792.5 gi|385775723|ref|YP_005648291.1| - 0.94 9.0 4.3 5.4 6.6 3.0 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|385775723|ref|YP_005648291.1| - 7.4 6.5 7.5 2.7 7.9 1.3 2.8 2 1 2 4 4 4 0 Rubredoxin VWA_2 PF13519.1 gi|385775724|ref|YP_005648292.1| - 5.4e-17 62.4 0.0 1.2e-15 57.9 0.0 2.3 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|385775724|ref|YP_005648292.1| - 6.9e-15 55.2 0.1 1.9e-14 53.7 0.1 1.7 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|385775724|ref|YP_005648292.1| - 8.7e-09 35.2 0.0 5.1e-07 29.5 0.0 2.8 2 1 0 2 2 2 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|385775724|ref|YP_005648292.1| - 0.00085 19.2 0.0 0.0091 15.8 0.0 2.4 2 1 0 2 2 2 1 vWA found in TerF C terminus CobT_C PF11775.3 gi|385775724|ref|YP_005648292.1| - 0.065 12.6 0.0 0.25 10.7 0.0 1.9 2 0 0 2 2 2 0 Cobalamin biosynthesis protein CobT VWA domain tRNA_m1G_MT PF01746.16 gi|385775725|ref|YP_005648293.1| - 1.8e-25 89.6 0.4 3.8e-25 88.5 0.2 1.6 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase DUF1533 PF07550.6 gi|385775725|ref|YP_005648293.1| - 0.037 14.0 6.4 0.29 11.1 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1533) LemA PF04011.7 gi|385775726|ref|YP_005648294.1| - 0.0086 15.1 0.2 0.0092 15.1 0.1 1.1 1 0 0 1 1 1 1 LemA family CoA_trans PF01144.18 gi|385775727|ref|YP_005648295.1| - 3.6e-33 114.5 0.0 4.1e-33 114.3 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase DUF3625 PF12293.3 gi|385775727|ref|YP_005648295.1| - 0.021 13.9 0.0 0.04 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3625) CoA_trans PF01144.18 gi|385775728|ref|YP_005648296.1| - 2e-26 92.5 0.1 2.2e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hydro PF02550.10 gi|385775728|ref|YP_005648296.1| - 0.074 12.8 0.1 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain MarR PF01047.17 gi|385775729|ref|YP_005648297.1| - 1.6e-13 50.1 0.1 3e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|385775729|ref|YP_005648297.1| - 1.4e-09 37.4 0.0 2.1e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385775729|ref|YP_005648297.1| - 8.3e-09 35.6 0.0 1.6e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|385775729|ref|YP_005648297.1| - 6.7e-06 26.0 0.1 1.1e-05 25.3 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|385775729|ref|YP_005648297.1| - 1.1e-05 25.4 1.5 8.1e-05 22.6 1.0 2.1 1 1 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|385775729|ref|YP_005648297.1| - 4.2e-05 23.1 0.5 8.2e-05 22.2 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|385775729|ref|YP_005648297.1| - 9.9e-05 21.6 0.0 0.00023 20.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|385775729|ref|YP_005648297.1| - 0.0033 17.2 0.3 0.0091 15.7 0.1 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|385775729|ref|YP_005648297.1| - 0.0041 16.7 1.9 0.041 13.5 0.5 2.5 1 1 2 3 3 3 1 HxlR-like helix-turn-helix Rrf2 PF02082.15 gi|385775729|ref|YP_005648297.1| - 0.0077 16.3 0.1 0.052 13.6 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator PadR PF03551.9 gi|385775729|ref|YP_005648297.1| - 0.01 15.5 0.3 0.024 14.3 0.2 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|385775729|ref|YP_005648297.1| - 0.067 12.7 0.2 0.067 12.7 0.2 2.5 2 1 1 3 3 3 0 TFIIE alpha subunit Rio2_N PF09202.6 gi|385775729|ref|YP_005648297.1| - 0.095 12.7 0.1 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Rio2, N-terminal DUF501 PF04417.7 gi|385775729|ref|YP_005648297.1| - 0.15 11.9 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF501) MacB_PCD PF12704.2 gi|385775730|ref|YP_005648298.1| - 9.3e-26 90.8 0.9 9.3e-26 90.8 0.7 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|385775730|ref|YP_005648298.1| - 3.5e-20 71.9 19.1 1.7e-19 69.7 7.9 2.5 2 0 0 2 2 2 2 FtsX-like permease family NPCBM_assoc PF10633.4 gi|385775731|ref|YP_005648299.1| - 3.1e-11 43.1 0.9 0.0089 16.0 0.0 5.3 5 0 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Rifin_STEVOR PF02009.11 gi|385775731|ref|YP_005648299.1| - 0.034 13.7 3.7 0.054 13.1 2.6 1.3 1 0 0 1 1 1 0 Rifin/stevor family ABC_tran PF00005.22 gi|385775732|ref|YP_005648300.1| - 6.3e-33 113.9 0.0 9.7e-33 113.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775732|ref|YP_005648300.1| - 6.2e-12 46.0 1.6 2.8e-06 27.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385775732|ref|YP_005648300.1| - 3.3e-06 26.4 1.0 1.7e-05 24.1 0.7 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385775732|ref|YP_005648300.1| - 0.00042 19.7 0.0 0.0007 19.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385775732|ref|YP_005648300.1| - 0.00046 20.2 0.2 0.00083 19.3 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|385775732|ref|YP_005648300.1| - 0.0017 17.4 5.0 0.038 13.0 0.7 2.2 1 1 1 2 2 2 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|385775732|ref|YP_005648300.1| - 0.0028 17.4 0.6 0.0051 16.5 0.4 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|385775732|ref|YP_005648300.1| - 0.0031 17.8 0.5 0.013 15.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|385775732|ref|YP_005648300.1| - 0.0043 16.9 0.0 0.028 14.3 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|385775732|ref|YP_005648300.1| - 0.0055 16.1 0.0 0.02 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|385775732|ref|YP_005648300.1| - 0.012 14.7 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|385775732|ref|YP_005648300.1| - 0.018 13.9 0.2 0.05 12.4 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|385775732|ref|YP_005648300.1| - 0.025 15.3 0.7 0.049 14.4 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385775732|ref|YP_005648300.1| - 0.028 14.5 0.0 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|385775732|ref|YP_005648300.1| - 0.04 13.3 0.3 0.052 12.9 0.2 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|385775732|ref|YP_005648300.1| - 0.11 12.8 0.3 0.11 12.8 0.2 2.0 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|385775732|ref|YP_005648300.1| - 0.11 11.3 0.0 0.33 9.7 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Lyase_1 PF00206.15 gi|385775733|ref|YP_005648301.1| - 1.5e-108 362.7 0.0 2.4e-108 362.0 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|385775733|ref|YP_005648301.1| - 3.9e-12 46.0 0.0 9.5e-12 44.8 0.0 1.7 1 0 0 1 1 1 1 Fumarase C C-terminus RuvA_C PF07499.8 gi|385775733|ref|YP_005648301.1| - 0.023 14.8 0.0 0.15 12.2 0.0 2.4 2 0 0 2 2 2 0 RuvA, C-terminal domain NUMOD1 PF07453.8 gi|385775733|ref|YP_005648301.1| - 0.05 13.4 0.4 0.33 10.8 0.0 2.3 2 0 0 2 2 2 0 NUMOD1 domain CBS PF00571.23 gi|385775735|ref|YP_005648303.1| - 5.5e-29 99.6 0.2 5e-14 51.8 0.0 2.0 2 0 0 2 2 2 2 CBS domain PHP PF02811.14 gi|385775735|ref|YP_005648303.1| - 0.061 13.1 0.0 0.062 13.0 0.0 1.1 1 0 0 1 1 1 0 PHP domain DSBA PF01323.15 gi|385775736|ref|YP_005648304.1| - 1.1e-22 80.4 0.6 1.1e-21 77.2 0.4 1.9 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|385775736|ref|YP_005648304.1| - 6.7e-19 68.1 0.0 2.2e-18 66.4 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|385775736|ref|YP_005648304.1| - 2.5e-09 37.3 0.5 1.2e-06 28.6 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|385775736|ref|YP_005648304.1| - 0.00024 21.2 0.0 0.53 10.4 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|385775736|ref|YP_005648304.1| - 0.00033 20.3 0.2 0.0061 16.3 0.0 2.6 2 1 1 3 3 3 1 Thioredoxin domain TipAS PF07739.8 gi|385775736|ref|YP_005648304.1| - 0.052 13.8 0.1 0.14 12.4 0.0 1.7 2 1 0 2 2 2 0 TipAS antibiotic-recognition domain AA_permease_2 PF13520.1 gi|385775737|ref|YP_005648305.1| - 2.7e-44 151.3 59.0 2.7e-44 151.3 40.9 2.3 1 1 0 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|385775737|ref|YP_005648305.1| - 2.6e-32 111.8 60.4 2.6e-32 111.8 41.8 2.2 1 1 1 2 2 2 1 Amino acid permease DJ-1_PfpI PF01965.19 gi|385775738|ref|YP_005648306.1| - 1.6e-37 128.2 0.0 1.9e-37 127.9 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|385775738|ref|YP_005648306.1| - 1.5e-08 34.1 0.0 2e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|385775738|ref|YP_005648306.1| - 0.00038 19.9 0.0 0.00045 19.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|385775738|ref|YP_005648306.1| - 0.044 12.6 0.0 0.27 10.1 0.0 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.9 gi|385775738|ref|YP_005648306.1| - 0.078 12.5 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HTH_1 PF00126.22 gi|385775739|ref|YP_005648307.1| - 2.7e-05 23.8 0.0 4.5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Nsp1_C PF05064.8 gi|385775739|ref|YP_005648307.1| - 0.00046 19.8 0.7 0.00067 19.2 0.5 1.2 1 0 0 1 1 1 1 Nsp1-like C-terminal region MutS_IV PF05190.13 gi|385775739|ref|YP_005648307.1| - 0.019 15.1 1.4 0.034 14.3 0.9 1.4 1 0 0 1 1 1 0 MutS family domain IV HTH_28 PF13518.1 gi|385775739|ref|YP_005648307.1| - 0.075 13.0 0.2 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain CAT PF00302.13 gi|385775739|ref|YP_005648307.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Chloramphenicol acetyltransferase ATP-grasp PF02222.17 gi|385775740|ref|YP_005648308.1| - 5.7e-50 169.0 0.0 1.1e-49 168.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385775740|ref|YP_005648308.1| - 3.8e-05 23.6 0.1 6.3e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385775740|ref|YP_005648308.1| - 0.00014 21.6 0.2 0.00071 19.3 0.0 2.1 1 1 1 2 2 2 1 ATP-grasp domain GARS_A PF01071.14 gi|385775740|ref|YP_005648308.1| - 0.00087 18.8 0.0 0.0024 17.4 0.0 1.7 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Uso1_p115_C PF04871.8 gi|385775740|ref|YP_005648308.1| - 0.1 12.5 0.4 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region ATPgrasp_Ter PF15632.1 gi|385775740|ref|YP_005648308.1| - 0.15 10.7 0.1 3.8 6.1 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon AIRC PF00731.15 gi|385775741|ref|YP_005648309.1| - 5.6e-70 233.4 0.2 6.3e-70 233.2 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase DUF4419 PF14388.1 gi|385775741|ref|YP_005648309.1| - 0.015 14.5 0.0 0.029 13.5 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4419) Radical_SAM PF04055.16 gi|385775741|ref|YP_005648309.1| - 0.015 15.4 0.0 1.4 9.0 0.0 2.2 1 1 1 2 2 2 0 Radical SAM superfamily Glutaredoxin PF00462.19 gi|385775741|ref|YP_005648309.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin PrpR_N PF06506.6 gi|385775741|ref|YP_005648309.1| - 0.027 13.8 0.0 0.043 13.2 0.0 1.5 1 0 0 1 1 1 0 Propionate catabolism activator Fe-ADH PF00465.14 gi|385775741|ref|YP_005648309.1| - 0.044 12.4 0.0 0.072 11.7 0.0 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|385775741|ref|YP_005648309.1| - 0.057 12.7 0.0 0.071 12.3 0.0 1.1 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase FAD_binding_4 PF01565.18 gi|385775742|ref|YP_005648310.1| - 1.3e-10 40.8 0.0 1.9e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HTH_34 PF13601.1 gi|385775743|ref|YP_005648311.1| - 1.4e-07 31.4 0.2 1.8e-07 31.0 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|385775743|ref|YP_005648311.1| - 1.9e-07 30.6 0.1 2.9e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|385775743|ref|YP_005648311.1| - 2.2e-07 30.4 0.9 3e-07 30.0 0.6 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|385775743|ref|YP_005648311.1| - 1.7e-06 27.3 1.2 2.8e-06 26.5 0.8 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385775743|ref|YP_005648311.1| - 2.4e-06 27.0 0.6 3.6e-06 26.5 0.4 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|385775743|ref|YP_005648311.1| - 2.7e-05 23.8 0.0 4e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|385775743|ref|YP_005648311.1| - 3.5e-05 23.8 0.3 5.9e-05 23.1 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|385775743|ref|YP_005648311.1| - 3.5e-05 24.0 0.1 4.6e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|385775743|ref|YP_005648311.1| - 3.7e-05 23.3 0.0 4.6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|385775743|ref|YP_005648311.1| - 3.8e-05 23.2 0.2 5.9e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HxlR PF01638.12 gi|385775743|ref|YP_005648311.1| - 4.8e-05 22.9 0.5 6.1e-05 22.5 0.3 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_28 PF13518.1 gi|385775743|ref|YP_005648311.1| - 0.0013 18.7 0.2 0.0018 18.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|385775743|ref|YP_005648311.1| - 0.0026 17.8 0.2 0.004 17.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|385775743|ref|YP_005648311.1| - 0.0026 17.0 0.1 0.0049 16.1 0.0 1.4 1 1 0 1 1 1 1 CodY helix-turn-helix domain HTH_45 PF14947.1 gi|385775743|ref|YP_005648311.1| - 0.0047 16.7 2.1 0.0065 16.2 1.4 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|385775743|ref|YP_005648311.1| - 0.018 14.9 0.6 0.044 13.7 0.2 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.5 gi|385775743|ref|YP_005648311.1| - 0.023 14.4 1.0 0.04 13.6 0.7 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FeoC PF09012.5 gi|385775743|ref|YP_005648311.1| - 0.036 13.7 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.16 gi|385775743|ref|YP_005648311.1| - 0.04 13.3 0.1 0.064 12.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family B-block_TFIIIC PF04182.7 gi|385775743|ref|YP_005648311.1| - 0.048 13.5 0.0 0.055 13.3 0.0 1.3 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_23 PF13384.1 gi|385775743|ref|YP_005648311.1| - 0.056 13.1 0.1 0.082 12.5 0.1 1.2 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|385775743|ref|YP_005648311.1| - 0.065 12.7 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Mga PF08280.6 gi|385775743|ref|YP_005648311.1| - 0.066 12.9 0.3 0.13 12.0 0.2 1.8 2 1 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain YjcQ PF09639.5 gi|385775743|ref|YP_005648311.1| - 0.077 13.0 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 YjcQ protein Sulfolobus_pRN PF05584.6 gi|385775743|ref|YP_005648311.1| - 0.079 12.9 0.3 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_17 PF12728.2 gi|385775743|ref|YP_005648311.1| - 0.082 13.1 0.6 0.26 11.5 0.1 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_9 PF08221.6 gi|385775743|ref|YP_005648311.1| - 0.088 12.6 0.2 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain SgrR_N PF12793.2 gi|385775743|ref|YP_005648311.1| - 0.12 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HARE-HTH PF05066.8 gi|385775743|ref|YP_005648311.1| - 0.14 12.5 0.3 1.3 9.4 0.1 2.2 2 1 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain MFS_1 PF07690.11 gi|385775744|ref|YP_005648312.1| - 4e-07 29.0 57.2 0.00023 19.9 8.0 3.8 1 1 2 3 3 3 2 Major Facilitator Superfamily GCV_H PF01597.14 gi|385775745|ref|YP_005648313.1| - 1.9e-42 143.7 1.3 2.3e-42 143.4 0.9 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|385775745|ref|YP_005648313.1| - 2.8e-06 26.8 3.1 2.8e-06 26.8 2.2 1.6 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|385775745|ref|YP_005648313.1| - 0.00027 20.6 0.4 0.0005 19.7 0.3 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.4 gi|385775745|ref|YP_005648313.1| - 0.014 15.1 0.3 0.022 14.4 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.17 gi|385775745|ref|YP_005648313.1| - 0.021 14.8 0.5 2.1 8.4 0.1 2.2 1 1 1 2 2 2 0 Peptidase family M23 BPL_LplA_LipB PF03099.14 gi|385775746|ref|YP_005648314.1| - 2.7e-10 40.3 0.0 5e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.4 gi|385775746|ref|YP_005648314.1| - 1.1e-05 25.0 0.4 2.7e-05 23.7 0.3 1.7 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus KMP11 PF03037.11 gi|385775746|ref|YP_005648314.1| - 0.076 13.6 5.0 0.22 12.1 0.3 3.0 4 0 0 4 4 4 0 Kinetoplastid membrane protein 11 DUF3110 PF11360.3 gi|385775747|ref|YP_005648315.1| - 0.036 13.8 2.0 7.9 6.3 0.8 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3110) V-SNARE PF05008.10 gi|385775748|ref|YP_005648316.1| - 0.024 14.7 2.2 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Cytochrom_B562 PF07361.6 gi|385775748|ref|YP_005648316.1| - 0.062 13.7 0.2 0.099 13.0 0.1 1.4 1 1 0 1 1 1 0 Cytochrome b562 OsmC PF02566.14 gi|385775749|ref|YP_005648317.1| - 1.8e-18 66.5 0.0 2.9e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein DUF3490 PF11995.3 gi|385775750|ref|YP_005648318.1| - 0.011 15.2 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3490) Ammonium_transp PF00909.16 gi|385775752|ref|YP_005648320.1| - 2e-90 303.1 31.3 2.6e-90 302.7 21.7 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family STT3 PF02516.9 gi|385775754|ref|YP_005648322.1| - 1.2e-16 60.7 37.0 1.2e-16 60.7 25.6 1.7 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit DUF3522 PF12036.3 gi|385775754|ref|YP_005648322.1| - 0.027 14.2 4.7 0.03 14.1 1.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3522) UPF0233 PF06781.7 gi|385775754|ref|YP_005648322.1| - 1.2 8.8 6.9 0.19 11.4 0.3 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0233) Nop10p PF04135.7 gi|385775755|ref|YP_005648323.1| - 3.5e-26 90.7 2.8 3.8e-26 90.5 2.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Cys_rich_CPCC PF14206.1 gi|385775755|ref|YP_005648323.1| - 0.089 12.3 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-ISL3 PF14690.1 gi|385775755|ref|YP_005648323.1| - 0.14 12.2 1.4 0.35 10.9 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 EIF_2_alpha PF07541.7 gi|385775756|ref|YP_005648324.1| - 4.9e-27 93.9 1.2 1.3e-26 92.4 0.3 2.0 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|385775756|ref|YP_005648324.1| - 5.6e-13 48.7 3.4 2.3e-12 46.8 0.1 2.9 3 0 0 3 3 3 1 S1 RNA binding domain SEO_C PF14577.1 gi|385775756|ref|YP_005648324.1| - 0.011 15.1 0.5 0.011 15.1 0.3 1.7 2 0 0 2 2 2 0 Sieve element occlusion C-terminus B5 PF03484.10 gi|385775756|ref|YP_005648324.1| - 0.066 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetase B5 domain RNA_pol_L_2 PF13656.1 gi|385775756|ref|YP_005648324.1| - 0.076 12.4 3.1 1.5 8.3 0.1 3.4 4 0 0 4 4 4 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S27e PF01667.12 gi|385775757|ref|YP_005648325.1| - 2e-19 68.8 1.0 2.2e-19 68.7 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|385775757|ref|YP_005648325.1| - 3.2e-05 22.9 1.3 0.045 12.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385775757|ref|YP_005648325.1| - 0.0001 21.6 2.2 0.043 13.3 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385775757|ref|YP_005648325.1| - 0.00018 20.7 1.5 0.00027 20.1 1.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|385775757|ref|YP_005648325.1| - 0.0021 18.3 0.2 0.0027 17.9 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar HypA PF01155.14 gi|385775757|ref|YP_005648325.1| - 0.0055 16.3 0.1 0.0063 16.1 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|385775757|ref|YP_005648325.1| - 0.0055 16.4 1.4 0.02 14.7 1.2 1.6 1 1 1 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|385775757|ref|YP_005648325.1| - 0.0056 16.1 3.0 0.051 13.0 2.0 2.2 1 1 1 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|385775757|ref|YP_005648325.1| - 0.0086 15.6 2.8 0.12 12.0 0.2 2.3 1 1 1 2 2 2 1 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|385775757|ref|YP_005648325.1| - 0.016 15.1 1.5 0.03 14.2 1.0 1.5 1 1 0 1 1 1 0 Zinc ribbon domain CpXC PF14353.1 gi|385775757|ref|YP_005648325.1| - 0.017 15.0 1.3 0.69 9.8 0.1 2.1 1 1 1 2 2 2 0 CpXC protein IBR PF01485.16 gi|385775757|ref|YP_005648325.1| - 0.019 14.8 0.2 0.022 14.6 0.1 1.1 1 0 0 1 1 1 0 IBR domain zf-C4_Topoisom PF01396.14 gi|385775757|ref|YP_005648325.1| - 0.02 14.3 0.7 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|385775757|ref|YP_005648325.1| - 0.038 13.6 1.2 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.2 gi|385775757|ref|YP_005648325.1| - 0.041 13.7 1.4 0.1 12.4 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|385775757|ref|YP_005648325.1| - 0.043 13.3 3.6 0.32 10.6 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385775757|ref|YP_005648325.1| - 0.047 13.3 0.6 0.065 12.9 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-trcl PF13451.1 gi|385775757|ref|YP_005648325.1| - 0.048 13.2 0.8 5.7 6.6 0.0 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain RNA_pol_N PF01194.12 gi|385775757|ref|YP_005648325.1| - 0.06 13.3 1.3 0.13 12.3 0.1 1.9 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit zf-ISL3 PF14690.1 gi|385775757|ref|YP_005648325.1| - 0.068 13.2 1.7 0.33 11.0 1.1 2.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.11 gi|385775757|ref|YP_005648325.1| - 0.082 12.6 5.5 0.39 10.4 0.1 2.4 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.1 gi|385775757|ref|YP_005648325.1| - 0.089 12.5 4.1 0.53 10.0 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|385775757|ref|YP_005648325.1| - 0.1 12.2 5.1 0.4 10.3 1.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-FPG_IleRS PF06827.9 gi|385775757|ref|YP_005648325.1| - 0.1 12.2 0.7 0.73 9.5 0.0 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.5 gi|385775757|ref|YP_005648325.1| - 0.13 11.7 2.1 4.2 6.9 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|385775757|ref|YP_005648325.1| - 0.13 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-NADH-PPase PF09297.6 gi|385775757|ref|YP_005648325.1| - 0.13 11.7 3.2 3.1 7.4 0.5 2.1 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Elf1 PF05129.8 gi|385775757|ref|YP_005648325.1| - 0.2 11.3 0.8 0.47 10.1 0.6 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like PADR1 PF08063.7 gi|385775757|ref|YP_005648325.1| - 0.23 10.8 2.0 0.32 10.4 0.5 1.7 1 1 1 2 2 2 0 PADR1 (NUC008) domain PhnA_Zn_Ribbon PF08274.7 gi|385775757|ref|YP_005648325.1| - 0.26 11.1 2.4 1.9 8.3 0.3 2.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Cys_rich_KTR PF14205.1 gi|385775757|ref|YP_005648325.1| - 0.3 10.5 1.6 1.1 8.7 1.1 1.9 1 1 0 1 1 1 0 Cysteine-rich KTR Mu-like_Com PF10122.4 gi|385775757|ref|YP_005648325.1| - 0.31 10.1 4.2 0.24 10.5 0.2 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-TFIIB PF13453.1 gi|385775757|ref|YP_005648325.1| - 0.32 10.2 1.8 0.6 9.3 1.3 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1 PF03811.8 gi|385775757|ref|YP_005648325.1| - 0.44 10.0 3.0 4.1 6.9 2.2 2.1 1 1 1 2 2 2 0 InsA N-terminal domain UPF0547 PF10571.4 gi|385775757|ref|YP_005648325.1| - 1.2 8.8 5.3 10 5.9 3.7 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Desulfoferrod_N PF06397.7 gi|385775757|ref|YP_005648325.1| - 6.9 6.1 6.1 7.1 6.1 0.1 2.6 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain Ribosomal_L44 PF00935.14 gi|385775758|ref|YP_005648326.1| - 1.2e-29 102.0 7.3 1.2e-29 102.0 5.1 1.4 2 0 0 2 2 2 1 Ribosomal protein L44 zf-ribbon_3 PF13248.1 gi|385775758|ref|YP_005648326.1| - 0.004 16.3 0.5 1.6 8.0 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|385775758|ref|YP_005648326.1| - 0.0049 16.8 0.9 2.2 8.3 0.2 2.4 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|385775758|ref|YP_005648326.1| - 0.0067 15.8 4.4 0.84 9.2 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385775758|ref|YP_005648326.1| - 0.031 13.9 4.4 0.3 10.8 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385775758|ref|YP_005648326.1| - 0.037 13.6 4.4 0.37 10.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2082 PF09855.4 gi|385775758|ref|YP_005648326.1| - 0.038 13.8 1.6 0.95 9.3 0.1 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Mu-like_Com PF10122.4 gi|385775758|ref|YP_005648326.1| - 0.04 12.9 2.0 1.2 8.1 0.2 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com DZR PF12773.2 gi|385775758|ref|YP_005648326.1| - 0.045 13.5 3.0 0.14 11.9 2.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon PyrI_C PF02748.10 gi|385775758|ref|YP_005648326.1| - 0.057 12.8 0.7 0.17 11.3 0.1 1.9 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-UBR PF02207.15 gi|385775758|ref|YP_005648326.1| - 0.06 13.0 0.9 1.7 8.3 0.1 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) DUF2387 PF09526.5 gi|385775758|ref|YP_005648326.1| - 0.085 12.7 0.1 11 6.0 0.0 2.3 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Baculo_ME53 PF06061.6 gi|385775758|ref|YP_005648326.1| - 0.096 11.6 1.7 0.096 11.6 0.1 1.7 2 0 0 2 2 2 0 Baculoviridae ME53 HECT_2 PF09814.4 gi|385775758|ref|YP_005648326.1| - 0.098 11.3 0.6 0.12 11.0 0.4 1.2 1 1 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding RNA_POL_M_15KD PF02150.11 gi|385775758|ref|YP_005648326.1| - 0.13 12.0 1.0 3.3 7.4 0.0 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Cys_rich_KTR PF14205.1 gi|385775758|ref|YP_005648326.1| - 0.13 11.6 2.6 1 8.8 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR DNA_RNApol_7kD PF03604.8 gi|385775758|ref|YP_005648326.1| - 0.22 10.9 2.4 0.32 10.5 0.1 2.2 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|385775758|ref|YP_005648326.1| - 0.27 10.9 3.8 2.7 7.7 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L34e PF01199.13 gi|385775758|ref|YP_005648326.1| - 1.7 8.9 7.7 3.1 8.0 1.3 2.0 1 1 1 2 2 2 0 Ribosomal protein L34e DNA_primase_S PF01896.14 gi|385775760|ref|YP_005648328.1| - 1.2e-18 67.3 0.1 7.2e-18 64.7 0.0 2.2 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit RecR PF02132.10 gi|385775760|ref|YP_005648328.1| - 0.092 12.1 1.6 0.18 11.2 1.1 1.5 1 0 0 1 1 1 0 RecR protein zf-NADH-PPase PF09297.6 gi|385775760|ref|YP_005648328.1| - 0.093 12.2 0.2 0.15 11.5 0.2 1.3 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|385775760|ref|YP_005648328.1| - 0.14 11.9 0.6 0.3 10.9 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PCNA_N PF00705.13 gi|385775761|ref|YP_005648329.1| - 1.8e-09 37.2 0.0 2.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|385775761|ref|YP_005648329.1| - 2.9e-09 36.9 0.3 8.3e-08 32.2 0.0 2.7 3 1 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|385775761|ref|YP_005648329.1| - 1.9e-05 23.6 0.1 0.017 13.9 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 ATP_bind_1 PF03029.12 gi|385775762|ref|YP_005648330.1| - 1.1e-56 192.0 0.0 1.3e-56 191.8 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|385775762|ref|YP_005648330.1| - 2e-06 27.3 0.4 0.043 13.2 0.0 2.9 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|385775762|ref|YP_005648330.1| - 4e-06 27.6 0.1 7.8e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|385775762|ref|YP_005648330.1| - 8.9e-06 25.2 0.0 0.0057 16.1 0.0 2.9 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation CbiA PF01656.18 gi|385775762|ref|YP_005648330.1| - 9.7e-06 25.1 0.2 1.3e-05 24.7 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|385775762|ref|YP_005648330.1| - 0.0001 22.6 0.1 0.00024 21.4 0.0 1.8 2 1 0 2 2 1 1 AAA domain AAA_10 PF12846.2 gi|385775762|ref|YP_005648330.1| - 0.00011 21.7 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain SRP54 PF00448.17 gi|385775762|ref|YP_005648330.1| - 0.00013 21.4 0.1 0.0014 18.1 0.0 2.3 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain G-alpha PF00503.15 gi|385775762|ref|YP_005648330.1| - 0.00015 20.5 0.5 0.019 13.7 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit AAA_16 PF13191.1 gi|385775762|ref|YP_005648330.1| - 0.00018 21.5 0.0 0.00089 19.2 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.1 gi|385775762|ref|YP_005648330.1| - 0.00084 18.9 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|385775762|ref|YP_005648330.1| - 0.0015 18.4 0.1 0.0047 16.8 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|385775762|ref|YP_005648330.1| - 0.0031 17.3 0.3 0.037 13.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|385775762|ref|YP_005648330.1| - 0.004 16.8 0.0 0.011 15.3 0.0 1.8 2 0 0 2 2 2 1 NACHT domain ArgK PF03308.11 gi|385775762|ref|YP_005648330.1| - 0.0041 15.9 0.0 0.097 11.4 0.0 2.1 2 0 0 2 2 2 1 ArgK protein cobW PF02492.14 gi|385775762|ref|YP_005648330.1| - 0.0047 16.3 0.1 0.14 11.6 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.12 gi|385775762|ref|YP_005648330.1| - 0.006 16.4 0.2 0.011 15.5 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF87 MobB PF03205.9 gi|385775762|ref|YP_005648330.1| - 0.0081 15.8 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|385775762|ref|YP_005648330.1| - 0.01 15.7 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|385775762|ref|YP_005648330.1| - 0.011 14.9 0.2 2.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KTI12 PF08433.5 gi|385775762|ref|YP_005648330.1| - 0.014 14.6 0.0 0.025 13.8 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|385775762|ref|YP_005648330.1| - 0.017 15.2 0.0 0.1 12.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase NTPase_1 PF03266.10 gi|385775762|ref|YP_005648330.1| - 0.023 14.4 0.4 0.37 10.4 0.0 2.5 3 0 0 3 3 3 0 NTPase APS_kinase PF01583.15 gi|385775762|ref|YP_005648330.1| - 0.024 14.3 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase PhoH PF02562.11 gi|385775762|ref|YP_005648330.1| - 0.027 13.7 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.1 gi|385775762|ref|YP_005648330.1| - 0.029 14.5 0.2 0.17 11.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|385775762|ref|YP_005648330.1| - 0.036 14.3 0.1 0.054 13.7 0.0 1.5 1 1 0 1 1 1 0 ABC transporter KAP_NTPase PF07693.9 gi|385775762|ref|YP_005648330.1| - 0.06 12.3 0.0 0.089 11.7 0.0 1.4 1 0 0 1 1 1 0 KAP family P-loop domain DUF258 PF03193.11 gi|385775762|ref|YP_005648330.1| - 0.063 12.4 0.1 1.1 8.4 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|385775762|ref|YP_005648330.1| - 0.074 12.6 0.0 0.29 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|385775762|ref|YP_005648330.1| - 0.081 12.7 0.1 0.51 10.1 0.1 2.1 1 1 0 1 1 1 0 Dynamin family NB-ARC PF00931.17 gi|385775762|ref|YP_005648330.1| - 0.083 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TrwB_AAD_bind PF10412.4 gi|385775762|ref|YP_005648330.1| - 0.094 11.3 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Viral_helicase1 PF01443.13 gi|385775762|ref|YP_005648330.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArsA_ATPase PF02374.10 gi|385775762|ref|YP_005648330.1| - 0.1 11.5 0.0 0.25 10.3 0.0 1.6 1 0 0 1 1 1 0 Anion-transporting ATPase Zeta_toxin PF06414.7 gi|385775762|ref|YP_005648330.1| - 0.11 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|385775762|ref|YP_005648330.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|385775762|ref|YP_005648330.1| - 0.11 12.9 0.0 2.4 8.6 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein Septin PF00735.13 gi|385775762|ref|YP_005648330.1| - 0.16 10.9 0.4 9.5 5.1 0.1 2.4 2 1 0 2 2 2 0 Septin Pribosyltran_N PF13793.1 gi|385775763|ref|YP_005648331.1| - 1.4e-30 105.3 0.0 1.3e-26 92.6 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|385775763|ref|YP_005648331.1| - 3.8e-15 55.7 0.2 3.8e-15 55.7 0.1 2.1 4 0 0 4 4 4 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|385775763|ref|YP_005648331.1| - 4.3e-09 36.3 1.4 8.4e-09 35.4 0.4 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|385775763|ref|YP_005648331.1| - 0.0018 17.4 0.1 0.0095 15.1 0.0 1.9 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|385775763|ref|YP_005648331.1| - 0.004 16.4 0.1 0.0057 15.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase UPF0020 PF01170.13 gi|385775764|ref|YP_005648332.1| - 4.9e-28 97.9 0.0 9.5e-28 96.9 0.0 1.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|385775764|ref|YP_005648332.1| - 3.6e-11 43.1 0.0 6.1e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|385775764|ref|YP_005648332.1| - 2.4e-10 40.3 0.0 3.8e-07 29.8 0.0 2.5 2 1 0 2 2 2 2 DNA methylase MTS PF05175.9 gi|385775764|ref|YP_005648332.1| - 4.9e-05 22.7 0.0 9.6e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|385775764|ref|YP_005648332.1| - 0.00047 19.7 0.0 0.0074 15.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MethyltransfD12 PF02086.10 gi|385775764|ref|YP_005648332.1| - 0.0005 19.6 0.3 0.0037 16.7 0.2 2.3 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|385775764|ref|YP_005648332.1| - 0.0024 17.2 0.0 0.0058 16.0 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|385775764|ref|YP_005648332.1| - 0.017 14.8 0.0 0.098 12.3 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Eco57I PF07669.6 gi|385775764|ref|YP_005648332.1| - 0.017 15.4 0.0 0.77 10.1 0.0 2.4 2 0 0 2 2 2 0 Eco57I restriction-modification methylase S_100 PF01023.14 gi|385775764|ref|YP_005648332.1| - 0.031 13.6 0.0 0.081 12.2 0.0 1.7 1 0 0 1 1 1 0 S-100/ICaBP type calcium binding domain N6_Mtase PF02384.11 gi|385775764|ref|YP_005648332.1| - 0.077 12.0 0.1 0.19 10.7 0.0 1.7 2 1 0 2 2 2 0 N-6 DNA Methylase Methyltransf_25 PF13649.1 gi|385775764|ref|YP_005648332.1| - 0.16 12.3 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Lactamase_B_2 PF12706.2 gi|385775765|ref|YP_005648333.1| - 2.1e-24 86.1 0.0 3.4e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385775765|ref|YP_005648333.1| - 3.1e-13 49.7 0.0 5.7e-12 45.6 0.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|385775765|ref|YP_005648333.1| - 0.016 14.9 0.0 0.11 12.1 0.0 2.3 1 1 1 2 2 2 0 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.1 gi|385775765|ref|YP_005648333.1| - 0.073 12.5 0.0 0.24 10.9 0.0 1.8 2 0 0 2 2 2 0 tRNase Z endonuclease RNA_binding PF01877.12 gi|385775766|ref|YP_005648334.1| - 4.6e-28 97.6 0.6 5.3e-28 97.4 0.4 1.0 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|385775767|ref|YP_005648335.1| - 3.9e-15 56.3 0.6 7.2e-15 55.4 0.1 1.6 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385775767|ref|YP_005648335.1| - 3.3e-14 53.7 0.7 8.4e-14 52.4 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385775767|ref|YP_005648335.1| - 3.4e-09 36.7 0.0 4.6e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|385775767|ref|YP_005648335.1| - 2.2e-06 27.6 0.0 2.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.7 gi|385775767|ref|YP_005648335.1| - 3.4e-05 23.0 0.1 0.00013 21.1 0.1 1.8 1 1 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|385775767|ref|YP_005648335.1| - 6e-05 23.1 0.0 0.0001 22.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|385775767|ref|YP_005648335.1| - 0.00022 20.7 0.1 0.33 10.3 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase KTI12 PF08433.5 gi|385775767|ref|YP_005648335.1| - 0.0011 18.2 0.3 0.0023 17.1 0.0 1.6 2 0 0 2 2 2 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|385775767|ref|YP_005648335.1| - 0.0027 17.4 0.3 0.32 10.6 0.0 2.2 2 0 0 2 2 2 1 NTPase Hpr_kinase_C PF07475.7 gi|385775767|ref|YP_005648335.1| - 0.003 16.8 0.1 0.006 15.9 0.1 1.5 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_28 PF13521.1 gi|385775767|ref|YP_005648335.1| - 0.0042 17.0 0.0 0.0062 16.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|385775767|ref|YP_005648335.1| - 0.0065 16.5 0.0 0.042 13.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_14 PF13173.1 gi|385775767|ref|YP_005648335.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385775767|ref|YP_005648335.1| - 0.012 15.0 0.1 3 7.2 0.1 2.1 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.7 gi|385775767|ref|YP_005648335.1| - 0.031 13.8 0.2 0.32 10.6 0.1 2.1 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein APS_kinase PF01583.15 gi|385775767|ref|YP_005648335.1| - 0.036 13.7 0.1 0.34 10.5 0.0 2.1 1 1 1 2 2 2 0 Adenylylsulphate kinase CbiA PF01656.18 gi|385775767|ref|YP_005648335.1| - 0.036 13.4 0.1 0.082 12.3 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.9 gi|385775767|ref|YP_005648335.1| - 0.043 13.5 0.2 0.37 10.5 0.1 2.2 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) VP9 PF09625.5 gi|385775767|ref|YP_005648335.1| - 0.044 13.5 0.1 0.81 9.5 0.0 2.4 1 1 1 2 2 2 0 VP9 protein ArgK PF03308.11 gi|385775767|ref|YP_005648335.1| - 0.053 12.3 0.2 0.11 11.3 0.1 1.4 1 0 0 1 1 1 0 ArgK protein Cytidylate_kin2 PF13189.1 gi|385775767|ref|YP_005648335.1| - 0.053 13.4 0.6 4.9 7.0 0.0 2.4 2 1 0 2 2 2 0 Cytidylate kinase-like family THOC7 PF05615.8 gi|385775767|ref|YP_005648335.1| - 0.074 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Tho complex subunit 7 AAA_19 PF13245.1 gi|385775767|ref|YP_005648335.1| - 0.1 12.3 0.1 0.7 9.6 0.0 2.3 3 0 0 3 3 3 0 Part of AAA domain AAA_25 PF13481.1 gi|385775767|ref|YP_005648335.1| - 0.13 11.6 0.2 3.7 6.8 0.1 2.4 2 0 0 2 2 2 0 AAA domain LigT_PEase PF02834.11 gi|385775768|ref|YP_005648336.1| - 1.6e-35 120.9 0.0 2.8e-18 65.6 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|385775768|ref|YP_005648336.1| - 3.3e-14 52.8 0.0 4.1e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|385775768|ref|YP_005648336.1| - 2.2e-11 43.8 0.0 3.6e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|385775768|ref|YP_005648336.1| - 0.019 14.0 0.0 0.049 12.6 0.0 1.7 1 1 1 2 2 2 0 Uncharacterised conserved protein tRNA_NucTransf2 PF09249.6 gi|385775769|ref|YP_005648337.1| - 2.5e-46 156.2 0.0 4.2e-46 155.5 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|385775769|ref|YP_005648337.1| - 1.6e-12 47.5 0.7 5.9e-12 45.7 0.5 2.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|385775769|ref|YP_005648337.1| - 0.026 14.5 0.0 0.074 13.1 0.0 1.7 1 0 0 1 1 1 0 DNA polymerase beta palm RIO1 PF01163.17 gi|385775770|ref|YP_005648338.1| - 0.00047 19.5 0.1 0.00076 18.8 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|385775770|ref|YP_005648338.1| - 0.0095 15.6 0.0 0.027 14.1 0.0 1.7 2 0 0 2 2 2 1 Phosphotransferase enzyme family UPF0547 PF10571.4 gi|385775771|ref|YP_005648339.1| - 0.067 12.8 0.9 0.12 12.0 0.6 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|385775771|ref|YP_005648339.1| - 0.085 12.3 0.3 0.12 11.8 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain SSV1_ORF_D-335 PF07935.6 gi|385775772|ref|YP_005648340.1| - 2.1e-15 56.1 0.0 2.8e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 ORF D-335-like protein Curlin_rpt PF07012.7 gi|385775774|ref|YP_005648342.1| - 0.16 11.7 0.9 0.39 10.4 0.6 1.8 1 0 0 1 1 1 0 Curlin associated repeat DUF3267 PF11667.3 gi|385775774|ref|YP_005648342.1| - 0.94 9.7 14.9 0.47 10.6 4.9 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3267) ABC_tran PF00005.22 gi|385775775|ref|YP_005648343.1| - 1.8e-24 86.5 0.0 3e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775775|ref|YP_005648343.1| - 4.3e-17 62.9 4.4 5.6e-15 56.0 3.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385775775|ref|YP_005648343.1| - 1.1e-10 41.0 4.4 8.4e-08 31.7 3.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385775775|ref|YP_005648343.1| - 6e-06 26.7 7.2 1.1e-05 25.8 5.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775775|ref|YP_005648343.1| - 9.3e-06 25.0 0.0 1.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|385775775|ref|YP_005648343.1| - 1.3e-05 25.0 0.5 0.00085 19.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain T2SE PF00437.15 gi|385775775|ref|YP_005648343.1| - 0.00015 20.8 0.0 0.00019 20.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|385775775|ref|YP_005648343.1| - 0.0013 18.5 0.2 0.0022 17.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|385775775|ref|YP_005648343.1| - 0.0033 17.1 0.0 0.0057 16.3 0.0 1.3 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|385775775|ref|YP_005648343.1| - 0.0043 17.8 0.0 0.0081 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|385775775|ref|YP_005648343.1| - 0.0052 16.4 0.0 0.016 14.8 0.0 1.8 2 0 0 2 2 2 1 NACHT domain SbcCD_C PF13558.1 gi|385775775|ref|YP_005648343.1| - 0.012 15.4 0.0 0.084 12.7 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|385775775|ref|YP_005648343.1| - 0.015 15.6 2.9 0.29 11.4 2.0 2.3 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|385775775|ref|YP_005648343.1| - 0.024 14.1 0.0 0.045 13.2 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|385775775|ref|YP_005648343.1| - 0.03 13.9 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|385775775|ref|YP_005648343.1| - 0.036 11.4 0.0 0.05 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.1 gi|385775775|ref|YP_005648343.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_11 PF13086.1 gi|385775775|ref|YP_005648343.1| - 0.074 12.6 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385775775|ref|YP_005648343.1| - 0.075 12.4 0.0 0.35 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|385775775|ref|YP_005648343.1| - 0.078 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|385775775|ref|YP_005648343.1| - 0.085 12.9 0.7 1.5 9.0 0.5 2.2 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|385775775|ref|YP_005648343.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|385775775|ref|YP_005648343.1| - 0.11 11.8 0.1 1.4 8.3 0.0 2.1 1 1 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|385775775|ref|YP_005648343.1| - 0.12 12.6 0.1 0.23 11.6 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|385775775|ref|YP_005648343.1| - 0.13 11.9 0.1 0.22 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|385775775|ref|YP_005648343.1| - 0.14 11.7 0.0 0.38 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain OrfB_IS605 PF01385.14 gi|385775776|ref|YP_005648344.1| - 1.4e-26 93.3 6.8 1.8e-26 92.9 4.7 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385775776|ref|YP_005648344.1| - 5.1e-24 83.7 0.1 1e-23 82.7 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385775776|ref|YP_005648344.1| - 0.025 13.9 0.1 4.6 6.6 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385775776|ref|YP_005648344.1| - 0.057 13.0 0.4 0.68 9.5 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385775776|ref|YP_005648344.1| - 0.083 12.6 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385775776|ref|YP_005648344.1| - 0.12 11.9 0.1 0.28 10.7 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain Cys_rich_CPCC PF14206.1 gi|385775776|ref|YP_005648344.1| - 0.17 11.4 0.3 0.32 10.5 0.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-ribbon_3 PF13248.1 gi|385775776|ref|YP_005648344.1| - 0.19 11.0 1.9 4.1 6.7 2.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385775776|ref|YP_005648344.1| - 0.21 11.4 0.6 7.1 6.5 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385775776|ref|YP_005648344.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385775776|ref|YP_005648344.1| - 5.3 6.9 5.3 4.8 7.1 0.4 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Kelch_6 PF13964.1 gi|385775777|ref|YP_005648345.1| - 3.8e-21 74.2 38.3 8.7e-06 25.6 1.0 7.6 4 1 3 7 7 7 4 Kelch motif fn3 PF00041.16 gi|385775777|ref|YP_005648345.1| - 1.3e-19 70.1 18.8 4.7e-11 42.6 0.6 3.8 5 1 0 5 5 5 2 Fibronectin type III domain Kelch_1 PF01344.20 gi|385775777|ref|YP_005648345.1| - 3.9e-13 48.7 36.8 0.001 18.5 0.8 7.2 6 1 0 6 6 6 6 Kelch motif Kelch_4 PF13418.1 gi|385775777|ref|YP_005648345.1| - 6.1e-13 48.3 16.5 0.0028 17.3 0.0 6.3 5 1 1 6 6 6 4 Galactose oxidase, central domain Kelch_5 PF13854.1 gi|385775777|ref|YP_005648345.1| - 2.9e-11 43.0 37.7 0.041 13.8 1.5 7.0 7 0 0 7 7 7 5 Kelch motif Kelch_2 PF07646.10 gi|385775777|ref|YP_005648345.1| - 6.8e-08 31.9 16.2 0.15 11.8 0.0 6.2 6 0 0 6 6 6 4 Kelch motif Interfer-bind PF09294.5 gi|385775777|ref|YP_005648345.1| - 0.0064 16.5 0.1 1.3 9.0 0.0 2.5 2 0 0 2 2 2 1 Interferon-alpha/beta receptor, fibronectin type III Kelch_3 PF13415.1 gi|385775777|ref|YP_005648345.1| - 0.017 15.2 22.1 1.7 8.9 0.1 6.8 6 1 0 6 6 6 0 Galactose oxidase, central domain DUF2369 PF10179.4 gi|385775777|ref|YP_005648345.1| - 0.052 12.6 0.5 6.9 5.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2369) Y_Y_Y PF07495.8 gi|385775777|ref|YP_005648345.1| - 0.69 9.7 12.9 0.3 10.8 0.2 4.1 4 0 0 4 4 4 0 Y_Y_Y domain BPD_transp_1 PF00528.17 gi|385775778|ref|YP_005648346.1| - 1.3e-16 60.6 15.9 1.3e-16 60.6 11.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2636 PF11120.3 gi|385775778|ref|YP_005648346.1| - 0.096 12.2 0.1 0.37 10.3 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2636) SBP_bac_11 PF13531.1 gi|385775779|ref|YP_005648347.1| - 6.8e-21 74.9 0.8 9.4e-21 74.4 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|385775779|ref|YP_005648347.1| - 2.5e-11 43.9 5.9 3.5e-11 43.4 4.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1628 PF07790.6 gi|385775779|ref|YP_005648347.1| - 0.064 14.0 2.7 0.15 12.8 1.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Herpes_US9 PF06072.6 gi|385775779|ref|YP_005648347.1| - 0.11 12.2 0.9 0.29 11.0 0.7 1.6 1 0 0 1 1 1 0 Alphaherpesvirus tegument protein US9 DUF2371 PF10177.4 gi|385775779|ref|YP_005648347.1| - 1.6 8.6 6.5 0.48 10.2 0.5 2.5 2 1 1 3 3 3 0 Uncharacterised conserved protein (DUF2371) DUF2878 PF11086.3 gi|385775779|ref|YP_005648347.1| - 9 6.2 7.6 9.8 6.1 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2878) adh_short PF00106.20 gi|385775780|ref|YP_005648348.1| - 4.9e-23 81.8 0.1 2.2e-22 79.7 0.1 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385775780|ref|YP_005648348.1| - 5.9e-17 62.2 0.0 8.6e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|385775780|ref|YP_005648348.1| - 4.1e-08 32.9 0.1 6.5e-08 32.3 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|385775780|ref|YP_005648348.1| - 1.2e-06 28.6 0.0 2.7e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|385775780|ref|YP_005648348.1| - 0.00012 21.8 0.0 0.0056 16.3 0.0 2.2 1 1 0 1 1 1 1 KR domain THF_DHG_CYH_C PF02882.14 gi|385775780|ref|YP_005648348.1| - 0.0011 18.0 0.1 0.0024 16.9 0.1 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.12 gi|385775780|ref|YP_005648348.1| - 0.0014 17.5 0.1 0.0049 15.7 0.0 1.8 2 0 0 2 2 2 1 RmlD substrate binding domain Molybdopterin PF00384.17 gi|385775781|ref|YP_005648349.1| - 1.4e-75 254.7 0.0 1.7e-75 254.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385775781|ref|YP_005648349.1| - 7.4e-25 86.9 0.0 1.4e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|385775781|ref|YP_005648349.1| - 3.6e-17 61.9 0.2 7.7e-17 60.8 0.2 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TatD_DNase PF01026.16 gi|385775782|ref|YP_005648350.1| - 2.7e-37 128.3 0.0 5.4e-37 127.3 0.0 1.4 1 1 0 1 1 1 1 TatD related DNase DUF3938 PF13074.1 gi|385775783|ref|YP_005648351.1| - 0.15 11.9 0.9 0.27 11.0 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3938) DUF2583 PF10762.4 gi|385775785|ref|YP_005648353.1| - 9.7 6.4 8.7 5.2 7.2 1.3 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2583) PRA1 PF03208.14 gi|385775787|ref|YP_005648355.1| - 0.31 10.3 6.8 0.31 10.3 4.3 1.3 1 1 0 1 1 1 0 PRA1 family protein DUF872 PF05915.7 gi|385775787|ref|YP_005648355.1| - 1.4 8.7 5.6 2.8 7.8 1.5 2.1 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Cation_ATPase_C PF00689.16 gi|385775787|ref|YP_005648355.1| - 3.6 7.0 10.1 4.3 6.8 7.0 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus Oxidored_q1 PF00361.15 gi|385775788|ref|YP_005648356.1| - 4.4e-47 160.6 22.0 4.4e-47 160.6 15.2 3.9 2 2 2 4 4 4 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Complex1_49kDa PF00346.14 gi|385775789|ref|YP_005648357.1| - 1.2e-11 44.0 0.0 1.8e-10 40.3 0.0 2.1 1 1 1 2 2 2 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|385775789|ref|YP_005648357.1| - 1.1e-05 24.4 0.0 0.0016 17.2 0.0 2.1 2 0 0 2 2 2 2 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|385775790|ref|YP_005648358.1| - 4.6e-21 74.8 0.3 1.3e-20 73.3 0.2 1.7 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit CFC PF09443.5 gi|385775790|ref|YP_005648358.1| - 0.044 13.4 1.0 0.078 12.6 0.7 1.4 1 0 0 1 1 1 0 Cripto_Frl-1_Cryptic (CFC) Fer4 PF00037.22 gi|385775790|ref|YP_005648358.1| - 0.085 12.4 13.1 0.14 11.8 0.3 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain DUF164 PF02591.10 gi|385775790|ref|YP_005648358.1| - 0.13 12.1 0.0 0.13 12.1 0.0 2.1 3 0 0 3 3 3 0 Putative zinc ribbon domain Oxidored_q1 PF00361.15 gi|385775791|ref|YP_005648359.1| - 5.1e-21 75.1 28.2 5.1e-21 75.1 19.5 4.3 3 1 1 4 4 4 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Vps23_core PF09454.5 gi|385775792|ref|YP_005648360.1| - 0.068 12.7 0.2 0.096 12.3 0.1 1.3 1 0 0 1 1 1 0 Vps23 core domain DUF2644 PF10841.3 gi|385775792|ref|YP_005648360.1| - 0.16 11.9 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2644) DUF904 PF06005.7 gi|385775792|ref|YP_005648360.1| - 0.19 12.0 0.3 0.19 12.0 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Jnk-SapK_ap_N PF09744.4 gi|385775792|ref|YP_005648360.1| - 3.8 7.4 8.1 1.3 8.9 3.3 1.8 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Rhodanese PF00581.15 gi|385775793|ref|YP_005648361.1| - 2.5e-38 130.9 0.1 9.7e-20 71.0 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF442 PF04273.8 gi|385775793|ref|YP_005648361.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) DUF2582 PF10771.4 gi|385775793|ref|YP_005648361.1| - 0.14 12.0 1.9 0.28 11.0 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2582) NicO PF03824.11 gi|385775794|ref|YP_005648362.1| - 9e-92 307.3 12.2 9e-92 307.3 8.5 1.5 2 0 0 2 2 2 1 High-affinity nickel-transport protein Brr6_like_C_C PF10104.4 gi|385775794|ref|YP_005648362.1| - 0.076 12.5 0.6 0.44 10.0 0.4 2.4 1 0 0 1 1 1 0 Di-sulfide bridge nucleocytoplasmic transport domain DUF2231 PF09990.4 gi|385775794|ref|YP_005648362.1| - 1.7 8.9 8.4 0.66 10.3 1.6 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2231) TPP_enzyme_N PF02776.13 gi|385775796|ref|YP_005648364.1| - 3.9e-49 166.4 0.0 6.8e-48 162.3 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|385775796|ref|YP_005648364.1| - 3.1e-39 133.9 0.5 1.5e-38 131.7 0.0 2.3 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|385775796|ref|YP_005648364.1| - 5.2e-28 97.5 0.0 1e-27 96.5 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|385775796|ref|YP_005648364.1| - 0.001 18.6 0.1 0.0023 17.4 0.0 1.6 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Methyltrn_RNA_4 PF09936.4 gi|385775796|ref|YP_005648364.1| - 0.037 13.5 0.0 0.074 12.5 0.0 1.4 1 0 0 1 1 1 0 SAM-dependent RNA methyltransferase Pyr_redox PF00070.22 gi|385775797|ref|YP_005648365.1| - 3.4e-14 53.0 1.2 1.7e-12 47.5 0.3 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385775797|ref|YP_005648365.1| - 9.2e-14 51.7 0.0 3.7e-12 46.5 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385775797|ref|YP_005648365.1| - 2.5e-08 34.2 0.0 5.5e-07 29.8 0.0 2.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|385775797|ref|YP_005648365.1| - 2e-05 23.6 0.0 3.3e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.19 gi|385775797|ref|YP_005648365.1| - 3.6e-05 22.8 5.9 0.0016 17.3 0.0 3.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|385775797|ref|YP_005648365.1| - 0.037 14.0 0.0 3.5 7.7 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Glutaredoxin PF00462.19 gi|385775797|ref|YP_005648365.1| - 0.057 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin RNA_bind_2 PF10133.4 gi|385775797|ref|YP_005648365.1| - 1.6 8.8 7.1 2.1 8.4 0.6 3.4 4 0 0 4 4 4 0 Predicted RNA-binding protein ABC_tran PF00005.22 gi|385775798|ref|YP_005648366.1| - 3e-33 114.9 0.1 8.5e-33 113.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385775798|ref|YP_005648366.1| - 2.9e-08 34.0 0.8 7.3e-07 29.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|385775798|ref|YP_005648366.1| - 0.00019 20.6 0.4 0.00038 19.6 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|385775798|ref|YP_005648366.1| - 0.00027 20.2 0.2 0.00088 18.5 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385775798|ref|YP_005648366.1| - 0.0009 18.3 3.2 0.51 9.3 0.6 2.8 2 1 0 3 3 3 2 AAA ATPase domain AAA_25 PF13481.1 gi|385775798|ref|YP_005648366.1| - 0.0046 16.3 0.0 0.06 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain TOBE_2 PF08402.5 gi|385775798|ref|YP_005648366.1| - 0.0047 16.8 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_29 PF13555.1 gi|385775798|ref|YP_005648366.1| - 0.011 15.1 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|385775798|ref|YP_005648366.1| - 0.019 15.7 0.5 0.064 14.0 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|385775798|ref|YP_005648366.1| - 0.025 14.5 0.2 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|385775798|ref|YP_005648366.1| - 0.039 13.6 0.1 0.069 12.8 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|385775798|ref|YP_005648366.1| - 0.064 12.6 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain RuvB_N PF05496.7 gi|385775798|ref|YP_005648366.1| - 0.093 11.7 0.3 2.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|385775798|ref|YP_005648366.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|385775798|ref|YP_005648366.1| - 0.37 11.0 3.4 1.4 9.2 2.2 2.1 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|385775799|ref|YP_005648367.1| - 2.4e-16 59.8 20.5 2.4e-16 59.8 14.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1426 PF07234.6 gi|385775799|ref|YP_005648367.1| - 6.4 6.5 8.3 1.1 8.9 2.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1426) BPD_transp_1 PF00528.17 gi|385775800|ref|YP_005648368.1| - 4.5e-15 55.6 18.9 4.5e-15 55.6 13.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|385775801|ref|YP_005648369.1| - 8.2e-27 94.7 2.9 1.8e-26 93.5 2.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|385775801|ref|YP_005648369.1| - 2.4e-20 73.4 0.1 3.5e-20 72.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|385775801|ref|YP_005648369.1| - 0.00016 21.4 0.0 0.28 10.7 0.0 3.1 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|385775801|ref|YP_005648369.1| - 0.0016 17.8 0.1 0.0087 15.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Shisa PF13908.1 gi|385775801|ref|YP_005648369.1| - 0.0053 16.9 1.2 0.01 16.0 0.8 1.4 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator DUF1510 PF07423.6 gi|385775801|ref|YP_005648369.1| - 0.082 12.2 0.2 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF1628 PF07790.6 gi|385775801|ref|YP_005648369.1| - 0.31 11.8 4.4 1.8 9.3 2.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) IncA PF04156.9 gi|385775801|ref|YP_005648369.1| - 1.3 8.5 5.4 3.2 7.2 3.7 1.5 1 0 0 1 1 1 0 IncA protein DUF4342 PF14242.1 gi|385775801|ref|YP_005648369.1| - 3.5 7.4 8.2 26 4.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) NadA PF02445.11 gi|385775802|ref|YP_005648370.1| - 4.2e-105 350.7 4.8 4.8e-105 350.5 3.3 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.19 gi|385775803|ref|YP_005648371.1| - 3e-77 260.2 0.0 7.8e-77 258.8 0.0 1.6 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|385775803|ref|YP_005648371.1| - 8.5e-13 47.9 0.5 7.7e-06 25.0 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385775803|ref|YP_005648371.1| - 6.3e-12 45.7 3.3 2e-10 40.9 2.3 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.15 gi|385775803|ref|YP_005648371.1| - 4.6e-10 39.4 0.0 1.3e-07 31.5 0.0 2.3 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term GIDA PF01134.17 gi|385775803|ref|YP_005648371.1| - 1.5e-08 33.8 0.4 1.7e-07 30.4 0.3 2.0 1 1 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|385775803|ref|YP_005648371.1| - 4.8e-07 28.5 1.7 5.7e-06 25.0 0.3 2.7 2 1 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|385775803|ref|YP_005648371.1| - 4e-05 23.5 0.6 0.00019 21.4 0.2 2.4 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|385775803|ref|YP_005648371.1| - 0.00049 19.2 0.3 0.00087 18.4 0.2 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|385775803|ref|YP_005648371.1| - 0.0026 18.1 0.3 0.066 13.6 0.0 2.7 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385775803|ref|YP_005648371.1| - 0.0064 16.2 0.5 1.5 8.5 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|385775803|ref|YP_005648371.1| - 0.0078 16.2 0.0 0.08 12.9 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385775803|ref|YP_005648371.1| - 0.015 14.3 0.1 0.023 13.7 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.9 gi|385775803|ref|YP_005648371.1| - 0.023 13.3 0.2 0.91 8.0 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|385775803|ref|YP_005648371.1| - 0.09 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding QRPTase_C PF01729.14 gi|385775804|ref|YP_005648372.1| - 5e-60 201.8 0.0 6.2e-60 201.5 0.0 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|385775804|ref|YP_005648372.1| - 8.9e-15 54.2 0.0 1.6e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NanE PF04131.9 gi|385775804|ref|YP_005648372.1| - 0.03 13.2 0.1 0.52 9.2 0.0 2.2 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF302 PF03625.9 gi|385775805|ref|YP_005648373.1| - 5.3e-19 67.5 0.0 7.4e-19 67.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF302 PadR PF03551.9 gi|385775806|ref|YP_005648374.1| - 5.5e-13 48.4 0.6 7.8e-13 48.0 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.5 gi|385775806|ref|YP_005648374.1| - 0.0062 16.2 0.4 0.011 15.4 0.3 1.5 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|385775806|ref|YP_005648374.1| - 0.03 14.1 0.8 0.1 12.4 0.5 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix TrmB PF01978.14 gi|385775806|ref|YP_005648374.1| - 0.043 13.5 0.1 0.082 12.6 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MFS_1 PF07690.11 gi|385775807|ref|YP_005648375.1| - 5.2e-34 117.4 51.6 2.9e-20 72.2 18.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|385775807|ref|YP_005648375.1| - 0.00042 20.0 13.4 0.0089 15.8 0.2 4.2 4 0 0 4 4 4 2 MFS_1 like family DUF3382 PF11862.3 gi|385775807|ref|YP_005648375.1| - 0.25 11.2 8.0 0.87 9.5 0.4 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF3382) GDE_C PF06202.9 gi|385775808|ref|YP_005648376.1| - 2.4e-111 372.0 0.0 3.4e-111 371.5 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|385775808|ref|YP_005648376.1| - 1.7e-43 148.4 1.8 2.4e-43 147.9 1.2 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|385775808|ref|YP_005648376.1| - 7.7e-08 31.4 0.1 1.2e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_100 PF12899.2 gi|385775808|ref|YP_005648376.1| - 0.00021 19.8 0.1 0.61 8.4 0.0 2.8 3 0 0 3 3 3 2 Alkaline and neutral invertase Glyco_hydro_15 PF00723.16 gi|385775809|ref|YP_005648377.1| - 3.4e-17 62.1 0.1 2.8e-13 49.2 0.2 2.4 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 NTP_transferase PF00483.18 gi|385775810|ref|YP_005648378.1| - 3.2e-34 118.3 0.0 4.3e-34 117.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|385775810|ref|YP_005648378.1| - 3.4e-07 29.4 12.0 0.091 12.3 0.0 4.9 2 2 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|385775810|ref|YP_005648378.1| - 0.0092 16.0 0.0 0.023 14.7 0.0 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain Glyco_hydro_57 PF03065.10 gi|385775811|ref|YP_005648379.1| - 8.3e-75 251.9 6.8 8.3e-75 251.9 4.7 2.3 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|385775811|ref|YP_005648379.1| - 0.0034 17.0 0.0 0.0071 15.9 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide deacetylase SynMuv_product PF06047.6 gi|385775811|ref|YP_005648379.1| - 0.034 13.8 0.1 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Ras-induced vulval development antagonist PTPlike_phytase PF14566.1 gi|385775811|ref|YP_005648379.1| - 0.062 13.3 0.1 0.22 11.5 0.0 1.8 1 1 1 2 2 2 0 Inositol hexakisphosphate Glycos_transf_1 PF00534.15 gi|385775812|ref|YP_005648380.1| - 4.1e-34 117.4 0.0 1e-33 116.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|385775812|ref|YP_005648380.1| - 2.1e-28 99.4 0.2 3.1e-28 98.9 0.1 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|385775812|ref|YP_005648380.1| - 3.4e-11 43.4 0.0 9.5e-11 41.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385775812|ref|YP_005648380.1| - 9.9e-07 29.0 0.0 8.4e-06 26.0 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|385775812|ref|YP_005648380.1| - 8.9e-05 22.6 0.1 0.0036 17.5 0.1 2.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385775812|ref|YP_005648380.1| - 0.00021 21.0 0.2 0.0036 17.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|385775812|ref|YP_005648380.1| - 0.04 13.7 0.3 12 5.7 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferase 4-like RIX1 PF08167.7 gi|385775813|ref|YP_005648381.1| - 0.029 14.0 1.0 0.19 11.4 0.2 2.3 2 0 0 2 2 2 0 rRNA processing/ribosome biogenesis Dioxygenase_N PF04444.9 gi|385775813|ref|YP_005648381.1| - 0.12 12.3 0.1 7.4 6.6 0.0 2.9 2 1 1 3 3 3 0 Catechol dioxygenase N terminus DAO PF01266.19 gi|385775814|ref|YP_005648382.1| - 3.6e-36 124.8 0.0 4.5e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385775814|ref|YP_005648382.1| - 7.5e-06 25.9 2.0 0.0034 17.2 1.3 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385775814|ref|YP_005648382.1| - 6.1e-05 22.9 0.7 0.00018 21.4 0.4 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|385775814|ref|YP_005648382.1| - 0.0024 16.9 1.4 0.0069 15.4 0.9 1.8 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|385775814|ref|YP_005648382.1| - 0.0032 16.5 0.5 0.0053 15.8 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|385775814|ref|YP_005648382.1| - 0.0038 17.3 0.1 0.01 15.9 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|385775814|ref|YP_005648382.1| - 0.045 12.3 0.8 2.2 6.8 0.5 2.1 2 0 0 2 2 2 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.9 gi|385775814|ref|YP_005648382.1| - 0.16 11.3 2.1 0.34 10.2 1.5 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_2 PF00890.19 gi|385775814|ref|YP_005648382.1| - 0.18 10.5 0.6 0.43 9.3 0.4 1.5 1 0 0 1 1 1 0 FAD binding domain ThiF PF00899.16 gi|385775814|ref|YP_005648382.1| - 0.23 11.2 0.7 0.48 10.2 0.1 1.9 2 0 0 2 2 2 0 ThiF family Ost4 PF10215.4 gi|385775815|ref|YP_005648383.1| - 0.084 12.3 1.0 0.12 11.8 0.7 1.2 1 0 0 1 1 1 0 Oligosaccaryltransferase DUF1955 PF09205.5 gi|385775817|ref|YP_005648385.1| - 8.6e-74 246.4 11.6 9.8e-74 246.2 8.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1955) PK PF00224.16 gi|385775818|ref|YP_005648386.1| - 1.8e-83 280.0 2.0 3e-83 279.3 1.4 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|385775818|ref|YP_005648386.1| - 3.1e-22 78.3 0.1 9.9e-22 76.6 0.0 1.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|385775818|ref|YP_005648386.1| - 0.001 18.0 0.4 0.0022 16.9 0.0 1.8 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Cpn10 PF00166.16 gi|385775818|ref|YP_005648386.1| - 0.026 14.4 0.0 0.13 12.2 0.0 2.3 1 0 0 1 1 1 0 Chaperonin 10 Kd subunit DUF202 PF02656.10 gi|385775819|ref|YP_005648387.1| - 6e-21 74.4 1.5 3.1e-20 72.1 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF202) Claudin_2 PF13903.1 gi|385775819|ref|YP_005648387.1| - 0.0012 18.6 2.4 0.0017 18.1 1.7 1.3 1 1 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction DUF2910 PF11139.3 gi|385775819|ref|YP_005648387.1| - 0.0077 15.3 0.6 0.011 14.8 0.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2910) YesK PF14150.1 gi|385775819|ref|YP_005648387.1| - 0.016 15.2 8.4 0.09 12.8 1.3 2.1 2 0 0 2 2 2 0 YesK-like protein SdpI PF13630.1 gi|385775819|ref|YP_005648387.1| - 0.025 14.2 13.8 0.025 14.3 3.7 2.2 1 1 1 2 2 2 0 SdpI/YhfL protein family ABC2_membrane_5 PF13346.1 gi|385775819|ref|YP_005648387.1| - 0.11 11.7 11.8 0.13 11.4 8.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1129 PF06570.6 gi|385775819|ref|YP_005648387.1| - 0.14 11.4 1.9 0.17 11.1 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) zf-DHHC PF01529.15 gi|385775819|ref|YP_005648387.1| - 0.28 10.5 4.8 0.46 9.8 3.3 1.4 1 1 0 1 1 1 0 DHHC palmitoyltransferase Cytochrom_B_N PF00033.14 gi|385775819|ref|YP_005648387.1| - 0.46 9.7 3.9 0.59 9.4 2.7 1.2 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB YtpI PF14007.1 gi|385775819|ref|YP_005648387.1| - 1.1 9.2 11.5 0.029 14.2 1.7 2.1 1 1 1 2 2 2 0 YtpI-like protein Tetraspannin PF00335.15 gi|385775819|ref|YP_005648387.1| - 1.3 8.2 10.7 6.3 5.9 7.4 1.8 1 1 0 1 1 1 0 Tetraspanin family DUF373 PF04123.8 gi|385775819|ref|YP_005648387.1| - 1.3 7.9 6.9 1.5 7.7 4.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Neurensin PF14927.1 gi|385775819|ref|YP_005648387.1| - 2.2 7.6 6.1 2.8 7.3 1.0 2.3 1 1 1 2 2 2 0 Neurensin DUF3753 PF12575.3 gi|385775819|ref|YP_005648387.1| - 2.6 7.8 15.8 1 9.1 2.8 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3753) MARVEL PF01284.18 gi|385775819|ref|YP_005648387.1| - 2.7 7.8 9.4 13 5.5 6.5 2.0 1 1 0 1 1 1 0 Membrane-associating domain UPF0233 PF06781.7 gi|385775819|ref|YP_005648387.1| - 3.2 7.4 5.2 17 5.1 0.1 2.5 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0233) CD20 PF04103.10 gi|385775819|ref|YP_005648387.1| - 4.3 7.2 7.5 7 6.5 5.2 1.5 1 1 0 1 1 1 0 CD20-like family Rib_5-P_isom_A PF06026.9 gi|385775820|ref|YP_005648388.1| - 3.4e-37 127.4 0.7 5.1e-37 126.8 0.5 1.2 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Sugar-bind PF04198.8 gi|385775820|ref|YP_005648388.1| - 0.0024 16.8 0.0 0.0034 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative sugar-binding domain DeoRC PF00455.17 gi|385775820|ref|YP_005648388.1| - 0.017 14.7 0.1 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain Hjc PF01870.13 gi|385775820|ref|YP_005648388.1| - 0.097 12.2 0.0 0.89 9.1 0.0 2.2 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) DUF4213 PF13938.1 gi|385775820|ref|YP_005648388.1| - 0.11 12.5 0.0 0.86 9.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4213) HMGL-like PF00682.14 gi|385775821|ref|YP_005648389.1| - 1.2e-67 228.0 1.6 1.9e-67 227.4 1.1 1.3 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.16 gi|385775821|ref|YP_005648389.1| - 3.6e-15 55.4 0.7 2.8e-14 52.5 0.2 2.5 2 0 0 2 2 2 1 AsnC family AP_endonuc_2 PF01261.19 gi|385775821|ref|YP_005648389.1| - 0.00061 19.1 0.1 0.0016 17.7 0.1 1.8 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ACT_4 PF13291.1 gi|385775821|ref|YP_005648389.1| - 0.0018 18.6 6.5 0.038 14.3 0.1 3.9 4 1 1 5 5 5 1 ACT domain PdxJ PF03740.8 gi|385775821|ref|YP_005648389.1| - 0.0048 16.0 0.4 0.014 14.5 0.2 1.8 1 1 0 1 1 1 1 Pyridoxal phosphate biosynthesis protein PdxJ Glyco_hydro_97 PF10566.4 gi|385775821|ref|YP_005648389.1| - 0.03 13.4 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Glycoside hydrolase 97 NapD PF03927.8 gi|385775821|ref|YP_005648389.1| - 0.037 13.8 0.6 0.23 11.3 0.1 2.6 2 0 0 2 2 2 0 NapD protein Radical_SAM PF04055.16 gi|385775821|ref|YP_005648389.1| - 0.042 14.0 2.1 0.19 11.8 0.5 2.7 1 1 1 2 2 2 0 Radical SAM superfamily SBDS_C PF09377.5 gi|385775821|ref|YP_005648389.1| - 0.058 13.0 0.2 0.3 10.7 0.1 2.1 2 0 0 2 2 2 0 SBDS protein C-terminal domain DUF816 PF05674.7 gi|385775822|ref|YP_005648390.1| - 0.0071 16.0 1.1 0.0092 15.7 0.7 1.1 1 0 0 1 1 1 1 Baculovirus protein of unknown function (DUF816) MtrG PF04210.8 gi|385775822|ref|YP_005648390.1| - 0.028 14.0 0.8 0.45 10.2 0.0 2.2 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Hormone_recep PF00104.25 gi|385775822|ref|YP_005648390.1| - 0.043 12.9 0.2 0.065 12.3 0.1 1.4 1 1 0 1 1 1 0 Ligand-binding domain of nuclear hormone receptor DUF1955 PF09205.5 gi|385775822|ref|YP_005648390.1| - 0.075 12.5 0.5 0.089 12.3 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1955) Tricorn_C1 PF14684.1 gi|385775822|ref|YP_005648390.1| - 0.089 12.6 0.1 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease C1 domain Snf7 PF03357.16 gi|385775822|ref|YP_005648390.1| - 0.1 11.9 1.9 5.4 6.3 0.0 2.0 1 1 1 2 2 2 0 Snf7 AA_kinase PF00696.23 gi|385775823|ref|YP_005648391.1| - 2.8e-28 99.1 0.1 3.6e-28 98.7 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family HAD PF12710.2 gi|385775823|ref|YP_005648391.1| - 0.023 14.8 0.0 0.21 11.7 0.0 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Helicase_C_3 PF13625.1 gi|385775823|ref|YP_005648391.1| - 0.059 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Helicase conserved C-terminal domain Cren7 PF11520.3 gi|385775824|ref|YP_005648392.1| - 2.6e-31 107.0 2.1 2.9e-31 106.9 1.4 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF4585 PF15232.1 gi|385775824|ref|YP_005648392.1| - 0.09 12.6 0.1 0.17 11.7 0.0 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4585) adh_short_C2 PF13561.1 gi|385775825|ref|YP_005648393.1| - 1.2e-22 80.8 0.0 1.5e-22 80.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|385775825|ref|YP_005648393.1| - 1.7e-14 54.0 0.0 2.4e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385775825|ref|YP_005648393.1| - 0.00022 20.9 0.0 0.00034 20.3 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|385775825|ref|YP_005648393.1| - 0.00022 21.2 0.0 0.00081 19.4 0.0 1.8 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|385775825|ref|YP_005648393.1| - 0.0095 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|385775825|ref|YP_005648393.1| - 0.029 14.7 0.0 0.11 12.9 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|385775825|ref|YP_005648393.1| - 0.056 13.5 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|385775825|ref|YP_005648393.1| - 0.095 11.7 0.1 0.27 10.3 0.1 1.7 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_2 PF03446.10 gi|385775826|ref|YP_005648394.1| - 1.1e-35 122.8 0.2 1.6e-35 122.3 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|385775826|ref|YP_005648394.1| - 1e-28 99.8 0.0 1.5e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|385775826|ref|YP_005648394.1| - 9.9e-11 41.9 0.5 3e-10 40.4 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|385775826|ref|YP_005648394.1| - 3.4e-06 26.3 0.1 6.3e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|385775826|ref|YP_005648394.1| - 0.00057 19.9 0.1 0.0011 19.0 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|385775826|ref|YP_005648394.1| - 0.00063 20.2 0.0 0.0012 19.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|385775826|ref|YP_005648394.1| - 0.0016 17.8 0.1 0.0032 16.8 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|385775826|ref|YP_005648394.1| - 0.0028 16.4 0.0 0.0049 15.6 0.0 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family 3HCDH_N PF02737.13 gi|385775826|ref|YP_005648394.1| - 0.0046 16.6 0.0 0.0092 15.6 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385775826|ref|YP_005648394.1| - 0.0074 15.7 0.0 0.024 14.1 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 5_3_exonuc_N PF02739.11 gi|385775826|ref|YP_005648394.1| - 0.031 13.6 0.0 0.077 12.3 0.0 1.6 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain UDPG_MGDP_dh_N PF03721.9 gi|385775826|ref|YP_005648394.1| - 0.1 11.9 1.5 1.3 8.4 0.1 2.8 2 1 1 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|385775826|ref|YP_005648394.1| - 0.11 12.6 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|385775826|ref|YP_005648394.1| - 0.15 11.7 0.4 2.6 7.7 0.1 2.8 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THUMP PF02926.12 gi|385775827|ref|YP_005648395.1| - 9.9e-05 22.2 0.4 0.00029 20.7 0.2 1.9 1 0 0 1 1 1 1 THUMP domain SRP54 PF00448.17 gi|385775828|ref|YP_005648396.1| - 4.4e-72 241.6 0.2 6.1e-72 241.1 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|385775828|ref|YP_005648396.1| - 1.4e-31 108.8 0.4 5.6e-29 100.4 0.0 2.5 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|385775828|ref|YP_005648396.1| - 6e-13 48.6 1.8 1.1e-11 44.6 0.4 3.1 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|385775828|ref|YP_005648396.1| - 5e-08 32.5 0.1 1.7e-07 30.8 0.1 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|385775828|ref|YP_005648396.1| - 1.4e-05 24.7 1.0 5.7e-05 22.8 0.1 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|385775828|ref|YP_005648396.1| - 2.8e-05 24.2 0.0 0.00013 22.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|385775828|ref|YP_005648396.1| - 9.2e-05 21.9 0.1 0.00044 19.7 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|385775828|ref|YP_005648396.1| - 0.00021 20.4 0.0 0.00042 19.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|385775828|ref|YP_005648396.1| - 0.0011 18.9 0.0 0.0026 17.6 0.0 1.7 2 0 0 2 2 1 1 AAA domain ArgK PF03308.11 gi|385775828|ref|YP_005648396.1| - 0.0015 17.3 0.1 0.0052 15.6 0.0 1.9 2 0 0 2 2 2 1 ArgK protein AAA_17 PF13207.1 gi|385775828|ref|YP_005648396.1| - 0.0016 19.2 2.1 0.0047 17.7 0.1 2.7 3 2 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|385775828|ref|YP_005648396.1| - 0.0024 18.1 1.0 0.007 16.6 0.0 2.4 3 1 0 3 3 1 1 AAA domain AAA_30 PF13604.1 gi|385775828|ref|YP_005648396.1| - 0.011 15.3 0.3 0.069 12.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|385775828|ref|YP_005648396.1| - 0.016 15.1 0.3 0.062 13.2 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase 6PF2K PF01591.13 gi|385775828|ref|YP_005648396.1| - 0.023 13.7 0.0 0.046 12.7 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_10 PF12846.2 gi|385775828|ref|YP_005648396.1| - 0.023 14.1 0.3 0.067 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_31 PF13614.1 gi|385775828|ref|YP_005648396.1| - 0.036 13.9 0.0 0.58 10.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|385775828|ref|YP_005648396.1| - 0.036 14.0 0.0 0.085 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|385775828|ref|YP_005648396.1| - 0.042 13.4 0.1 0.27 10.7 0.0 2.3 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein DUF3629 PF12302.3 gi|385775828|ref|YP_005648396.1| - 0.072 12.4 0.3 0.12 11.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3629) ArsA_ATPase PF02374.10 gi|385775828|ref|YP_005648396.1| - 0.072 12.1 0.5 5.3 5.9 0.0 2.9 3 0 0 3 3 3 0 Anion-transporting ATPase Thymidylate_kin PF02223.12 gi|385775828|ref|YP_005648396.1| - 0.27 10.6 1.9 0.77 9.0 0.1 2.7 4 0 0 4 4 4 0 Thymidylate kinase eIF-5a PF01287.15 gi|385775829|ref|YP_005648397.1| - 1.3e-14 53.9 0.4 2.1e-14 53.1 0.3 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|385775829|ref|YP_005648397.1| - 1.3e-05 24.9 0.0 2.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|385775829|ref|YP_005648397.1| - 0.00085 18.9 1.4 0.0025 17.4 1.0 1.8 1 0 0 1 1 1 1 KOW motif EFP PF01132.15 gi|385775829|ref|YP_005648397.1| - 0.018 14.7 0.4 0.036 13.7 0.2 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain TP6A_N PF04406.9 gi|385775830|ref|YP_005648398.1| - 9.9e-24 82.7 0.1 1.7e-23 82.0 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase HAD_2 PF13419.1 gi|385775830|ref|YP_005648398.1| - 0.033 14.4 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF2399 PF09664.5 gi|385775830|ref|YP_005648398.1| - 0.091 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.6 gi|385775831|ref|YP_005648399.1| - 4.2e-68 227.9 0.3 7.5e-68 227.0 0.2 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c_3 PF13589.1 gi|385775831|ref|YP_005648399.1| - 3e-14 52.8 0.0 8.4e-14 51.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|385775831|ref|YP_005648399.1| - 2.1e-12 46.7 0.0 4.2e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|385775831|ref|YP_005648399.1| - 6.3e-08 31.5 0.0 6.3e-08 31.5 0.0 2.1 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|385775831|ref|YP_005648399.1| - 4e-05 24.0 0.4 0.00032 21.1 0.0 2.5 2 0 0 2 2 2 1 Ribosomal protein S13/S18 H2TH PF06831.9 gi|385775831|ref|YP_005648399.1| - 0.0022 17.6 0.2 0.013 15.2 0.0 2.2 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain DS PF01916.12 gi|385775832|ref|YP_005648400.1| - 2e-80 270.1 0.1 2.2e-80 269.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase RtcB PF01139.12 gi|385775833|ref|YP_005648401.1| - 3e-150 500.8 0.1 3.4e-150 500.7 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB zf-FCS PF06467.9 gi|385775834|ref|YP_005648402.1| - 0.0053 16.3 0.6 0.0094 15.5 0.4 1.5 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ta0938 PF11494.3 gi|385775834|ref|YP_005648402.1| - 0.014 15.4 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 Ta0938 zf-C2H2_6 PF13912.1 gi|385775834|ref|YP_005648402.1| - 0.022 14.6 0.1 0.037 13.9 0.1 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger ZZ PF00569.12 gi|385775834|ref|YP_005648402.1| - 0.073 12.6 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 Zinc finger, ZZ type zf-C2H2 PF00096.21 gi|385775834|ref|YP_005648402.1| - 0.12 12.8 0.3 0.12 12.8 0.2 1.8 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|385775834|ref|YP_005648402.1| - 0.34 10.6 0.3 0.34 10.6 0.2 1.8 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.9 gi|385775834|ref|YP_005648402.1| - 0.47 9.9 3.3 0.59 9.6 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif DUF2175 PF09943.4 gi|385775834|ref|YP_005648402.1| - 0.68 10.0 3.3 8.8 6.4 2.3 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) zf-H2C2_2 PF13465.1 gi|385775834|ref|YP_005648402.1| - 0.71 10.2 3.3 2.5 8.5 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DEAD PF00270.24 gi|385775835|ref|YP_005648403.1| - 2e-27 95.7 0.0 5.4e-27 94.3 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|385775835|ref|YP_005648403.1| - 1.9e-20 73.3 0.2 2.6e-19 69.6 0.0 2.9 3 1 0 3 3 3 1 DEAD/H associated Helicase_C PF00271.26 gi|385775835|ref|YP_005648403.1| - 1.3e-10 41.0 0.1 1.9e-09 37.2 0.0 3.0 4 0 0 4 4 4 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385775835|ref|YP_005648403.1| - 1.6e-05 24.7 0.0 6.1e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HTH_20 PF12840.2 gi|385775835|ref|YP_005648403.1| - 0.0002 21.1 0.2 0.0097 15.6 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385775835|ref|YP_005648403.1| - 0.0022 17.9 0.0 1.7 8.6 0.0 3.6 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|385775835|ref|YP_005648403.1| - 0.0031 17.1 0.0 0.01 15.4 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family IL7 PF01415.11 gi|385775835|ref|YP_005648403.1| - 0.0054 16.3 0.1 0.022 14.3 0.1 2.1 1 0 0 1 1 1 1 Interleukin 7/9 family KOW PF00467.24 gi|385775835|ref|YP_005648403.1| - 0.025 14.3 0.1 0.74 9.6 0.0 3.3 3 0 0 3 3 3 0 KOW motif HTH_32 PF13565.1 gi|385775835|ref|YP_005648403.1| - 0.1 13.4 0.6 0.43 11.4 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain Alba PF01918.16 gi|385775836|ref|YP_005648404.1| - 6.6e-14 51.2 0.3 7.9e-14 50.9 0.2 1.1 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|385775836|ref|YP_005648404.1| - 0.055 13.1 0.1 0.068 12.8 0.0 1.3 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.15 gi|385775837|ref|YP_005648405.1| - 2.1e-88 296.9 0.2 3.5e-88 296.1 0.1 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|385775837|ref|YP_005648405.1| - 2.6e-22 78.6 0.0 1.2e-21 76.5 0.0 2.3 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|385775837|ref|YP_005648405.1| - 2.2e-09 37.0 0.4 5.2e-08 32.5 0.3 2.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|385775837|ref|YP_005648405.1| - 1.7e-05 24.7 0.5 7.1e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Toprim_4 PF13662.1 gi|385775837|ref|YP_005648405.1| - 0.0014 18.5 0.0 0.0046 16.9 0.0 1.9 1 0 0 1 1 1 1 Toprim domain HypA PF01155.14 gi|385775837|ref|YP_005648405.1| - 0.011 15.4 1.1 0.089 12.4 0.1 2.6 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|385775837|ref|YP_005648405.1| - 0.011 15.4 0.5 0.28 11.0 0.1 2.8 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|385775837|ref|YP_005648405.1| - 0.02 14.0 6.2 0.37 10.0 1.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain PspA_IM30 PF04012.7 gi|385775837|ref|YP_005648405.1| - 0.31 10.3 0.3 0.66 9.2 0.2 1.4 1 0 0 1 1 1 0 PspA/IM30 family DUF1272 PF06906.6 gi|385775837|ref|YP_005648405.1| - 0.81 9.5 4.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-RING_3 PF14369.1 gi|385775837|ref|YP_005648405.1| - 0.84 9.6 6.5 1.2 9.2 1.0 2.4 2 0 0 2 2 2 0 zinc-finger zinc_ribbon_2 PF13240.1 gi|385775837|ref|YP_005648405.1| - 1.1 8.8 6.0 6.4 6.3 0.9 2.5 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|385775837|ref|YP_005648405.1| - 2.4 7.9 5.1 5.9 6.6 0.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|385775837|ref|YP_005648405.1| - 3.2 7.4 6.6 4 7.1 0.9 3.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|385775837|ref|YP_005648405.1| - 8.5 6.2 7.0 5.9 6.7 0.7 2.3 2 0 0 2 2 2 0 Double zinc ribbon Alba PF01918.16 gi|385775838|ref|YP_005648406.1| - 3.3e-19 68.2 0.6 4.6e-19 67.7 0.4 1.2 1 0 0 1 1 1 1 Alba YjzC PF14168.1 gi|385775839|ref|YP_005648407.1| - 0.04 13.8 0.1 0.076 12.9 0.0 1.5 2 0 0 2 2 2 0 YjzC-like protein PKD PF00801.15 gi|385775839|ref|YP_005648407.1| - 0.041 13.6 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 PKD domain ResIII PF04851.10 gi|385775842|ref|YP_005648410.1| - 5.5e-23 81.7 0.4 3.4e-21 75.8 0.1 3.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385775842|ref|YP_005648410.1| - 2.7e-19 68.8 0.1 4.3e-18 64.9 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385775842|ref|YP_005648410.1| - 1.5e-09 37.5 0.0 3.7e-08 33.0 0.0 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|385775842|ref|YP_005648410.1| - 1.2e-08 34.1 0.1 1.2e-07 30.8 0.1 2.4 1 1 0 1 1 1 1 SNF2 family N-terminal domain Sigma70_ECF PF07638.6 gi|385775842|ref|YP_005648410.1| - 0.0069 16.0 0.1 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 ECF sigma factor DDE_Tnp_IS66_C PF13817.1 gi|385775842|ref|YP_005648410.1| - 0.011 15.7 0.0 0.044 13.8 0.0 2.0 2 0 0 2 2 2 0 IS66 C-terminal element Helicase_C_2 PF13307.1 gi|385775842|ref|YP_005648410.1| - 0.034 14.0 3.2 0.071 13.0 0.0 3.0 2 2 1 3 3 3 0 Helicase C-terminal domain LAGLIDADG_1 PF00961.14 gi|385775842|ref|YP_005648410.1| - 5.3 7.6 10.7 0.87 10.1 0.4 3.3 3 0 0 3 3 3 0 LAGLIDADG endonuclease Glu-tRNAGln PF02686.10 gi|385775844|ref|YP_005648412.1| - 1.3e-19 69.7 0.1 1.7e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit RIO1 PF01163.17 gi|385775844|ref|YP_005648412.1| - 0.0097 15.2 0.1 0.013 14.8 0.1 1.3 1 0 0 1 1 1 1 RIO1 family SporV_AA PF12164.3 gi|385775844|ref|YP_005648412.1| - 0.022 14.7 1.1 0.03 14.3 0.8 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AA DUF717 PF05338.7 gi|385775844|ref|YP_005648412.1| - 0.091 12.7 1.4 13 5.7 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF717) Amidase PF01425.16 gi|385775845|ref|YP_005648413.1| - 6.9e-136 453.5 0.0 7.8e-136 453.4 0.0 1.0 1 0 0 1 1 1 1 Amidase Wyosine_form PF08608.7 gi|385775846|ref|YP_005648414.1| - 1.4e-23 82.7 0.0 4.5e-23 81.1 0.0 1.9 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|385775846|ref|YP_005648414.1| - 2.1e-20 73.5 0.2 9.4e-20 71.4 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily CTP-dep_RFKase PF01982.11 gi|385775847|ref|YP_005648415.1| - 4e-42 142.6 0.0 5.9e-42 142.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_1 PF00126.22 gi|385775847|ref|YP_005648415.1| - 0.00074 19.2 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|385775847|ref|YP_005648415.1| - 0.018 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.12 gi|385775847|ref|YP_005648415.1| - 0.028 14.0 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Antitoxin-MazE PF04014.13 gi|385775847|ref|YP_005648415.1| - 0.034 13.8 0.9 0.15 11.8 0.0 2.4 2 0 0 2 2 2 0 Antidote-toxin recognition MazE HTH_27 PF13463.1 gi|385775847|ref|YP_005648415.1| - 0.04 14.2 0.0 0.077 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|385775847|ref|YP_005648415.1| - 0.045 13.4 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|385775847|ref|YP_005648415.1| - 0.12 12.0 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 MarR family HemN_C PF06969.11 gi|385775847|ref|YP_005648415.1| - 0.12 12.4 0.1 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain DUF357 PF04010.8 gi|385775848|ref|YP_005648416.1| - 1.8e-20 72.3 3.0 4.9e-20 71.0 2.1 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|385775848|ref|YP_005648416.1| - 7.2e-11 42.3 0.1 1.5e-10 41.3 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase Phage_Mu_Gam PF07352.7 gi|385775848|ref|YP_005648416.1| - 0.042 13.3 0.4 0.29 10.6 0.0 2.3 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein FAD_syn PF06574.7 gi|385775848|ref|YP_005648416.1| - 0.082 12.5 0.0 0.27 10.8 0.0 2.0 1 1 0 1 1 1 0 FAD synthetase Radical_SAM PF04055.16 gi|385775848|ref|YP_005648416.1| - 0.096 12.8 2.3 0.15 12.2 0.9 1.9 1 1 1 2 2 2 0 Radical SAM superfamily ERp29 PF07749.7 gi|385775848|ref|YP_005648416.1| - 0.1 13.2 2.3 1.7 9.3 0.0 2.8 3 1 1 4 4 4 0 Endoplasmic reticulum protein ERp29, C-terminal domain Peripla_BP_2 PF01497.13 gi|385775848|ref|YP_005648416.1| - 0.11 11.5 0.1 2.1 7.4 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding protein TP_methylase PF00590.15 gi|385775849|ref|YP_005648417.1| - 6.6e-21 74.9 0.0 8.1e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Metallophos PF00149.23 gi|385775850|ref|YP_005648418.1| - 5.2e-05 22.7 0.6 0.00015 21.2 0.4 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|385775850|ref|YP_005648418.1| - 5.7e-05 23.0 0.1 0.0001 22.1 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribosomal_L4 PF00573.17 gi|385775850|ref|YP_005648418.1| - 0.0052 16.1 0.1 0.008 15.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Cpn60_TCP1 PF00118.19 gi|385775850|ref|YP_005648418.1| - 0.012 14.2 0.1 0.014 14.0 0.1 1.2 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family Ins_allergen_rp PF06757.8 gi|385775850|ref|YP_005648418.1| - 0.045 13.2 0.1 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification Peptidase_M55 PF04951.8 gi|385775850|ref|YP_005648418.1| - 0.095 11.9 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 D-aminopeptidase HAD PF12710.2 gi|385775850|ref|YP_005648418.1| - 0.099 12.7 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Latexin PF06907.7 gi|385775850|ref|YP_005648418.1| - 0.13 11.3 0.1 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Latexin TBP PF00352.16 gi|385775851|ref|YP_005648419.1| - 2.5e-64 212.6 0.1 7.8e-34 114.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|385775851|ref|YP_005648419.1| - 6.2e-06 26.1 0.0 0.063 13.3 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) Spore_YhaL PF14147.1 gi|385775851|ref|YP_005648419.1| - 1.7 8.1 5.0 2.1 7.8 0.0 2.6 3 0 0 3 3 3 0 Sporulation protein YhaL BcrAD_BadFG PF01869.15 gi|385775852|ref|YP_005648420.1| - 6.6e-14 51.8 0.0 1.1e-13 51.1 0.0 1.3 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family GDA1_CD39 PF01150.12 gi|385775852|ref|YP_005648420.1| - 0.0011 17.5 0.0 0.002 16.6 0.0 1.4 1 0 0 1 1 1 1 GDA1/CD39 (nucleoside phosphatase) family DOG1 PF14144.1 gi|385775852|ref|YP_005648420.1| - 0.0029 17.6 0.0 0.027 14.5 0.0 2.2 2 0 0 2 2 2 1 Seed dormancy control DUF4468 PF14730.1 gi|385775852|ref|YP_005648420.1| - 0.012 15.2 0.2 0.035 13.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4468) with TBP-like fold Hydantoinase_A PF01968.13 gi|385775852|ref|YP_005648420.1| - 0.11 11.6 0.0 0.34 9.9 0.0 1.8 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase DUF373 PF04123.8 gi|385775854|ref|YP_005648422.1| - 8.1e-104 347.3 22.8 9.2e-104 347.1 15.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) IncA PF04156.9 gi|385775855|ref|YP_005648423.1| - 7.1e-05 22.4 53.9 0.00015 21.4 15.2 3.2 1 1 1 2 2 2 1 IncA protein DUF4201 PF13870.1 gi|385775855|ref|YP_005648423.1| - 0.00011 21.7 5.2 0.00011 21.7 3.6 4.1 1 1 3 4 4 4 1 Domain of unknown function (DUF4201) Reo_sigmaC PF04582.7 gi|385775855|ref|YP_005648423.1| - 0.00062 19.0 9.0 0.00084 18.6 3.5 2.2 1 1 1 2 2 2 1 Reovirus sigma C capsid protein HsbA PF12296.3 gi|385775855|ref|YP_005648423.1| - 0.0019 18.0 13.8 0.32 10.8 0.2 4.3 2 2 2 4 4 4 2 Hydrophobic surface binding protein A ATG16 PF08614.6 gi|385775855|ref|YP_005648423.1| - 0.0022 17.8 17.6 0.0022 17.8 12.2 3.4 1 1 3 4 4 4 2 Autophagy protein 16 (ATG16) DUF3450 PF11932.3 gi|385775855|ref|YP_005648423.1| - 0.0023 17.2 8.5 0.0023 17.2 5.9 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF3450) MCPsignal PF00015.16 gi|385775855|ref|YP_005648423.1| - 0.0032 17.0 24.6 0.69 9.4 7.5 2.6 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain TMF_DNA_bd PF12329.3 gi|385775855|ref|YP_005648423.1| - 0.0088 15.8 17.7 0.0088 15.8 12.2 5.7 1 1 6 7 7 7 2 TATA element modulatory factor 1 DNA binding T4SS PF07996.6 gi|385775855|ref|YP_005648423.1| - 0.02 14.7 26.1 0.088 12.6 8.9 2.5 1 1 1 2 2 2 0 Type IV secretion system proteins DUF3584 PF12128.3 gi|385775855|ref|YP_005648423.1| - 0.035 11.4 45.0 0.046 11.0 31.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.7 gi|385775855|ref|YP_005648423.1| - 0.05 13.4 27.5 0.016 15.0 7.9 3.5 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|385775855|ref|YP_005648423.1| - 0.052 12.0 58.9 0.031 12.7 27.6 2.1 1 1 1 2 2 2 0 AAA domain Mnd1 PF03962.10 gi|385775855|ref|YP_005648423.1| - 0.077 12.6 55.3 0.36 10.4 10.5 3.3 1 1 2 3 3 3 0 Mnd1 family Cluap1 PF10234.4 gi|385775855|ref|YP_005648423.1| - 0.092 11.9 49.1 0.0071 15.5 20.0 2.5 1 1 1 2 2 2 0 Clusterin-associated protein-1 AAA_27 PF13514.1 gi|385775855|ref|YP_005648423.1| - 0.26 8.9 40.1 1.4 6.4 18.2 2.3 1 1 1 2 2 2 0 AAA domain Atg14 PF10186.4 gi|385775855|ref|YP_005648423.1| - 0.33 9.8 62.6 0.35 9.7 10.1 3.2 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Syntaxin PF00804.20 gi|385775855|ref|YP_005648423.1| - 0.33 11.1 58.3 1.7 8.8 11.5 4.1 1 1 2 3 3 3 0 Syntaxin HalX PF08663.5 gi|385775855|ref|YP_005648423.1| - 0.49 10.4 10.8 3.4 7.7 0.1 4.8 3 3 2 5 5 5 0 HalX domain Nup88 PF10168.4 gi|385775855|ref|YP_005648423.1| - 0.95 7.2 50.9 1.7 6.3 20.8 2.1 1 1 1 2 2 2 0 Nuclear pore component DUF972 PF06156.8 gi|385775855|ref|YP_005648423.1| - 1.3 9.4 55.8 0.039 14.3 8.7 5.0 1 1 4 5 5 5 0 Protein of unknown function (DUF972) TBPIP PF07106.8 gi|385775855|ref|YP_005648423.1| - 2.7 7.5 64.1 0.074 12.6 15.3 3.7 1 1 4 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MbeD_MobD PF04899.7 gi|385775855|ref|YP_005648423.1| - 3.9 7.4 9.6 1.7 8.6 0.1 4.0 3 1 2 5 5 5 0 MbeD/MobD like Laminin_I PF06008.9 gi|385775855|ref|YP_005648423.1| - 4.7 6.4 46.1 2.3 7.4 8.6 2.3 1 1 1 2 2 2 0 Laminin Domain I V-ATPase_C PF03223.10 gi|385775855|ref|YP_005648423.1| - 5.1 5.9 27.8 0.47 9.3 1.4 3.7 1 1 2 3 3 3 0 V-ATPase subunit C Tropomyosin_1 PF12718.2 gi|385775855|ref|YP_005648423.1| - 5.3 6.8 63.1 28 4.5 20.0 3.5 1 1 1 2 2 2 0 Tropomyosin like DUF869 PF05911.6 gi|385775855|ref|YP_005648423.1| - 5.5 5.0 53.7 0.058 11.6 17.2 2.5 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Seryl_tRNA_N PF02403.17 gi|385775855|ref|YP_005648423.1| - 9.1 6.3 66.0 0.49 10.4 14.4 4.7 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Gar1 PF04410.9 gi|385775856|ref|YP_005648424.1| - 4.8e-06 26.1 0.3 6e-06 25.7 0.2 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|385775856|ref|YP_005648424.1| - 0.00031 20.5 0.5 0.00048 19.9 0.0 1.6 2 0 0 2 2 2 1 PRC-barrel domain TFIIB PF00382.14 gi|385775857|ref|YP_005648425.1| - 4.1e-22 77.7 0.0 1.3e-11 44.0 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385775857|ref|YP_005648425.1| - 1.3e-17 62.7 2.4 2.1e-17 62.1 1.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|385775857|ref|YP_005648425.1| - 0.00097 19.3 0.7 0.0019 18.4 0.5 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|385775857|ref|YP_005648425.1| - 0.0013 17.9 1.7 0.7 9.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Sigma70_r4 PF04545.11 gi|385775857|ref|YP_005648425.1| - 0.0023 17.2 0.0 0.005 16.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Prim_Zn_Ribbon PF08273.7 gi|385775857|ref|YP_005648425.1| - 0.013 15.5 0.7 0.026 14.6 0.5 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.1 gi|385775857|ref|YP_005648425.1| - 0.034 13.6 4.6 0.44 10.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Sigma70_r4_2 PF08281.7 gi|385775857|ref|YP_005648425.1| - 0.06 12.8 0.0 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Elf1 PF05129.8 gi|385775857|ref|YP_005648425.1| - 0.074 12.7 0.5 0.18 11.4 0.4 1.7 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF2387 PF09526.5 gi|385775857|ref|YP_005648425.1| - 0.078 12.9 0.5 0.17 11.7 0.3 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.12 gi|385775857|ref|YP_005648425.1| - 0.081 12.4 0.5 0.14 11.7 0.3 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 DUF1548 PF07579.6 gi|385775857|ref|YP_005648425.1| - 0.1 12.7 0.2 0.7 10.0 0.0 2.1 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1548) Zn_Tnp_IS1595 PF12760.2 gi|385775857|ref|YP_005648425.1| - 0.11 12.3 0.2 0.19 11.5 0.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|385775857|ref|YP_005648425.1| - 0.11 12.0 0.7 0.17 11.4 0.5 1.3 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|385775857|ref|YP_005648425.1| - 0.13 11.9 0.4 0.24 11.1 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|385775857|ref|YP_005648425.1| - 0.15 11.9 0.2 0.28 11.0 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|385775857|ref|YP_005648425.1| - 0.5 9.8 4.1 9.4 5.8 2.9 2.4 1 1 0 1 1 1 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|385775857|ref|YP_005648425.1| - 0.52 10.2 2.1 2.1 8.3 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin RNA_pol_Rpc34 PF05158.7 gi|385775858|ref|YP_005648426.1| - 7.5e-12 45.0 3.9 5.7e-07 29.0 1.6 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit HTH_24 PF13412.1 gi|385775858|ref|YP_005648426.1| - 5.8e-06 25.5 1.2 4.6e-05 22.7 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.7 gi|385775858|ref|YP_005648426.1| - 3.6e-05 23.5 0.2 6.1e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|385775858|ref|YP_005648426.1| - 0.00027 20.5 0.0 0.0011 18.5 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|385775858|ref|YP_005648426.1| - 0.00054 19.6 0.1 0.00097 18.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.17 gi|385775858|ref|YP_005648426.1| - 0.00094 18.9 0.9 0.0039 16.9 0.2 2.2 3 0 0 3 3 3 1 Helix-turn-helix TFIIE_alpha PF02002.12 gi|385775858|ref|YP_005648426.1| - 0.0051 16.2 0.1 0.0068 15.9 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit RPA_C PF08784.6 gi|385775858|ref|YP_005648426.1| - 0.011 16.1 0.1 0.016 15.5 0.1 1.3 1 0 0 1 1 1 0 Replication protein A C terminal TrmB PF01978.14 gi|385775858|ref|YP_005648426.1| - 0.014 15.0 0.8 0.019 14.6 0.2 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PaRep2b PF07775.6 gi|385775858|ref|YP_005648426.1| - 0.015 13.5 0.1 0.017 13.3 0.1 1.0 1 0 0 1 1 1 0 PaRep2b protein HTH_Crp_2 PF13545.1 gi|385775858|ref|YP_005648426.1| - 0.05 13.3 0.0 0.087 12.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|385775858|ref|YP_005648426.1| - 0.057 13.5 0.1 0.16 12.0 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain RepC PF06504.6 gi|385775858|ref|YP_005648426.1| - 0.11 11.4 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Replication protein C (RepC) HTH_27 PF13463.1 gi|385775858|ref|YP_005648426.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TRM PF02005.11 gi|385775859|ref|YP_005648427.1| - 1.6e-94 316.9 0.0 1.8e-94 316.7 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.1 gi|385775859|ref|YP_005648427.1| - 0.0024 17.4 0.0 0.006 16.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain ShK PF01549.19 gi|385775859|ref|YP_005648427.1| - 1.1 9.7 4.8 2.1 8.7 3.3 1.5 1 0 0 1 1 1 0 ShK domain-like zf-ribbon_3 PF13248.1 gi|385775859|ref|YP_005648427.1| - 4.5 6.6 8.0 14 5.0 5.5 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|385775859|ref|YP_005648427.1| - 8.8 6.1 6.8 15 5.4 4.7 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_3 PF01381.17 gi|385775860|ref|YP_005648428.1| - 1.3e-11 44.1 0.1 6.6e-11 41.8 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix HTH_19 PF12844.2 gi|385775860|ref|YP_005648428.1| - 1.1e-09 38.1 0.7 6e-08 32.6 0.0 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|385775860|ref|YP_005648428.1| - 5.4e-07 29.7 0.0 1.2e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|385775860|ref|YP_005648428.1| - 0.00024 20.5 0.0 0.00089 18.7 0.0 2.0 1 0 0 1 1 1 1 MerR family regulatory protein HTH_23 PF13384.1 gi|385775860|ref|YP_005648428.1| - 0.00062 19.3 0.0 0.002 17.7 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_25 PF13413.1 gi|385775860|ref|YP_005648428.1| - 0.0022 17.5 0.1 0.051 13.2 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|385775860|ref|YP_005648428.1| - 0.0029 17.8 0.0 0.009 16.2 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_22 PF13309.1 gi|385775860|ref|YP_005648428.1| - 0.0038 16.9 0.0 0.022 14.4 0.0 2.3 2 0 0 2 2 2 1 HTH domain NUMOD1 PF07453.8 gi|385775860|ref|YP_005648428.1| - 0.0039 16.9 0.1 0.016 15.0 0.1 2.2 1 0 0 1 1 1 1 NUMOD1 domain MerR_1 PF13411.1 gi|385775860|ref|YP_005648428.1| - 0.0063 16.2 0.4 0.11 12.3 0.0 3.0 3 0 0 3 3 3 1 MerR HTH family regulatory protein PASTA PF03793.14 gi|385775860|ref|YP_005648428.1| - 0.013 15.1 0.4 0.13 11.9 0.1 2.5 2 0 0 2 2 2 0 PASTA domain HTH_7 PF02796.10 gi|385775860|ref|YP_005648428.1| - 0.02 14.7 0.1 0.13 12.1 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase HTH_6 PF01418.12 gi|385775860|ref|YP_005648428.1| - 0.03 14.0 0.0 0.18 11.5 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain, rpiR family Phage_AlpA PF05930.7 gi|385775860|ref|YP_005648428.1| - 0.087 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) DUF61 PF01886.11 gi|385775861|ref|YP_005648429.1| - 3.7e-31 107.6 0.5 4.4e-31 107.4 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 Fibrillarin PF01269.12 gi|385775862|ref|YP_005648430.1| - 4.8e-98 326.6 0.1 5.5e-98 326.4 0.1 1.0 1 0 0 1 1 1 1 Fibrillarin DUF1447 PF07288.6 gi|385775862|ref|YP_005648430.1| - 0.01 15.5 0.0 0.11 12.2 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1447) PCMT PF01135.14 gi|385775862|ref|YP_005648430.1| - 0.072 12.6 0.1 0.16 11.5 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Nop PF01798.13 gi|385775863|ref|YP_005648431.1| - 1.5e-53 180.1 0.2 2.8e-53 179.2 0.1 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|385775863|ref|YP_005648431.1| - 2.1e-24 85.0 0.1 4.4e-24 84.0 0.1 1.6 1 0 0 1 1 1 1 NOSIC (NUC001) domain RuvA_C PF07499.8 gi|385775863|ref|YP_005648431.1| - 0.0079 16.3 0.1 0.041 14.0 0.0 2.3 2 0 0 2 2 2 1 RuvA, C-terminal domain DUF3215 PF11503.3 gi|385775863|ref|YP_005648431.1| - 0.034 13.7 0.2 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) Ribosomal_S30 PF04758.9 gi|385775864|ref|YP_005648432.1| - 1.7e-13 50.1 5.5 2e-13 49.8 3.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Sas10 PF09368.5 gi|385775864|ref|YP_005648432.1| - 0.16 12.1 7.4 0.3 11.2 4.9 1.6 1 1 1 2 2 2 0 Sas10 C-terminal domain Asparaginase PF00710.15 gi|385775865|ref|YP_005648433.1| - 1.1e-88 297.1 0.1 1.3e-88 296.8 0.0 1.0 1 0 0 1 1 1 1 Asparaginase GatB_N PF02934.10 gi|385775866|ref|YP_005648434.1| - 6.7e-81 271.3 0.0 1e-80 270.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|385775866|ref|YP_005648434.1| - 1.2e-25 90.0 6.8 1.2e-25 90.0 4.7 2.5 3 0 0 3 3 3 1 GatB domain GAD PF02938.9 gi|385775866|ref|YP_005648434.1| - 5e-10 39.4 1.2 1.7e-08 34.4 0.0 3.3 2 1 0 3 3 3 1 GAD domain YqeY PF09424.5 gi|385775866|ref|YP_005648434.1| - 2.2e-05 24.3 2.3 5.2e-05 23.1 1.6 1.7 1 0 0 1 1 1 1 Yqey-like protein PrcB_C PF14343.1 gi|385775867|ref|YP_005648435.1| - 0.13 11.9 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 PrcB C-terminal HTH_37 PF13744.1 gi|385775868|ref|YP_005648436.1| - 0.00011 21.8 0.1 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|385775868|ref|YP_005648436.1| - 0.0085 15.9 0.2 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix Ribonuc_red_lgC PF02867.10 gi|385775869|ref|YP_005648437.1| - 6.5e-169 562.9 0.0 8.3e-169 562.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|385775869|ref|YP_005648437.1| - 2.7e-28 97.5 0.2 6.4e-28 96.3 0.1 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|385775869|ref|YP_005648437.1| - 2.5e-11 43.8 2.7 5.7e-11 42.7 0.6 2.6 2 0 0 2 2 2 1 ATP cone domain DBINO PF13892.1 gi|385775869|ref|YP_005648437.1| - 0.63 10.0 6.0 1.1 9.3 0.1 2.4 2 0 0 2 2 2 0 DNA-binding domain RHH_1 PF01402.16 gi|385775870|ref|YP_005648438.1| - 6.9e-07 28.8 1.0 1.1e-06 28.2 0.7 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|385775870|ref|YP_005648438.1| - 0.017 14.8 0.6 0.024 14.3 0.5 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix domain UPF0051 PF01458.12 gi|385775871|ref|YP_005648439.1| - 1.2e-48 165.6 0.9 1.5e-48 165.2 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|385775872|ref|YP_005648440.1| - 1.4e-60 204.6 0.0 1.7e-60 204.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|385775873|ref|YP_005648441.1| - 1.3e-23 83.7 0.1 1.8e-23 83.3 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385775873|ref|YP_005648441.1| - 4.5e-11 43.2 0.1 8.8e-10 39.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385775873|ref|YP_005648441.1| - 3e-05 23.3 0.2 0.00045 19.5 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|385775873|ref|YP_005648441.1| - 0.0063 15.9 0.0 0.013 14.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385775873|ref|YP_005648441.1| - 0.016 14.7 0.1 0.038 13.5 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|385775873|ref|YP_005648441.1| - 0.025 13.7 0.0 0.04 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|385775873|ref|YP_005648441.1| - 0.044 14.1 0.1 0.05 13.9 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|385775873|ref|YP_005648441.1| - 0.11 12.6 0.3 0.37 10.9 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|385775873|ref|YP_005648441.1| - 0.14 10.6 0.3 0.42 9.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Antitoxin-MazE PF04014.13 gi|385775874|ref|YP_005648442.1| - 7.5e-09 35.1 0.1 2.3e-08 33.5 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DED PF01335.16 gi|385775874|ref|YP_005648442.1| - 0.011 15.8 1.1 1.2 9.3 0.5 2.7 2 0 0 2 2 2 0 Death effector domain Prefoldin_3 PF13758.1 gi|385775874|ref|YP_005648442.1| - 0.044 13.5 0.4 0.13 12.0 0.3 1.8 1 0 0 1 1 1 0 Prefoldin subunit HSP20 PF00011.16 gi|385775875|ref|YP_005648443.1| - 0.0083 15.9 0.3 0.1 12.4 0.2 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|385775875|ref|YP_005648443.1| - 0.016 15.7 1.9 0.026 15.0 1.3 1.4 1 0 0 1 1 1 0 CS domain Aldo_ket_red PF00248.16 gi|385775875|ref|YP_005648443.1| - 0.023 13.5 0.2 0.049 12.4 0.0 1.5 2 0 0 2 2 2 0 Aldo/keto reductase family Val_tRNA-synt_C PF10458.4 gi|385775875|ref|YP_005648443.1| - 0.029 14.4 0.3 0.05 13.6 0.2 1.3 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm DBB PF14545.1 gi|385775875|ref|YP_005648443.1| - 0.051 13.0 0.3 0.081 12.4 0.2 1.4 1 0 0 1 1 1 0 Dof, BCAP, and BANK (DBB) motif, PAC2 PF09754.4 gi|385775876|ref|YP_005648444.1| - 2.8e-37 128.7 0.1 3.4e-37 128.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family GCV_H PF01597.14 gi|385775877|ref|YP_005648445.1| - 8.8e-43 144.8 1.1 9.9e-43 144.7 0.8 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|385775877|ref|YP_005648445.1| - 0.0013 18.2 0.4 0.0028 17.2 0.3 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|385775877|ref|YP_005648445.1| - 0.027 14.2 0.3 0.066 12.9 0.1 1.6 1 1 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GCV_T PF01571.16 gi|385775878|ref|YP_005648446.1| - 7.5e-43 146.3 0.0 9.3e-43 146.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|385775878|ref|YP_005648446.1| - 2.4e-18 65.9 0.0 3.9e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain GDC-P PF02347.11 gi|385775879|ref|YP_005648447.1| - 1.7e-123 412.4 0.0 2.1e-123 412.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein GDC-P PF02347.11 gi|385775880|ref|YP_005648448.1| - 7.9e-14 51.1 0.0 2.7e-12 46.1 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|385775880|ref|YP_005648448.1| - 3.5e-08 32.5 0.2 1.3e-07 30.6 0.2 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|385775880|ref|YP_005648448.1| - 0.0063 15.6 0.1 0.011 14.9 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DUF126 PF01989.11 gi|385775880|ref|YP_005648448.1| - 0.1 12.3 0.0 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF126 Peptidase_S24 PF00717.18 gi|385775881|ref|YP_005648449.1| - 0.00037 20.0 0.2 0.00059 19.4 0.2 1.4 1 0 0 1 1 1 1 Peptidase S24-like DUF2649 PF10854.3 gi|385775881|ref|YP_005648449.1| - 0.38 10.9 2.5 1 9.4 1.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2649) UPF0547 PF10571.4 gi|385775882|ref|YP_005648450.1| - 8e-06 25.4 3.9 0.038 13.6 0.3 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|385775882|ref|YP_005648450.1| - 1.8e-05 23.7 4.5 0.014 14.6 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain FYDLN_acid PF09538.5 gi|385775882|ref|YP_005648450.1| - 2.3e-05 24.9 2.3 0.047 14.2 0.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.7 gi|385775882|ref|YP_005648450.1| - 4.1e-05 22.8 3.5 0.11 11.8 0.1 2.6 3 0 0 3 3 2 2 TFIIB zinc-binding DUF1610 PF07754.6 gi|385775882|ref|YP_005648450.1| - 4.5e-05 23.4 8.9 0.033 14.3 0.9 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|385775882|ref|YP_005648450.1| - 5.3e-05 22.5 4.1 0.00045 19.6 2.8 2.2 1 1 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|385775882|ref|YP_005648450.1| - 5.5e-05 22.5 0.6 0.062 12.8 0.0 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385775882|ref|YP_005648450.1| - 8.2e-05 22.3 0.6 0.14 12.0 0.0 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|385775882|ref|YP_005648450.1| - 0.00019 21.3 0.5 0.21 11.6 0.0 2.3 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|385775882|ref|YP_005648450.1| - 0.00025 20.7 1.8 0.033 13.9 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|385775882|ref|YP_005648450.1| - 0.00094 19.0 1.5 0.29 11.1 0.2 2.4 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385775882|ref|YP_005648450.1| - 0.0018 17.8 0.3 1.7 8.3 0.0 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain CpXC PF14353.1 gi|385775882|ref|YP_005648450.1| - 0.0019 18.1 0.1 0.004 17.1 0.1 1.6 1 1 0 1 1 1 1 CpXC protein zf-IS66 PF13005.2 gi|385775882|ref|YP_005648450.1| - 0.0024 17.8 1.3 0.025 14.5 1.6 2.0 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 DZR PF12773.2 gi|385775882|ref|YP_005648450.1| - 0.0032 17.2 2.4 0.028 14.2 1.6 2.0 1 1 0 1 1 1 1 Double zinc ribbon zf-3CxxC PF13695.1 gi|385775882|ref|YP_005648450.1| - 0.0033 17.6 0.6 0.0033 17.6 0.4 2.1 2 1 0 2 2 2 1 Zinc-binding domain DUF2296 PF10058.4 gi|385775882|ref|YP_005648450.1| - 0.0036 17.0 1.5 2 8.1 0.1 2.2 2 0 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) Cren7 PF11520.3 gi|385775882|ref|YP_005648450.1| - 0.0036 16.8 0.8 0.018 14.6 0.1 2.2 2 1 0 2 2 2 1 Chromatin protein Cren7 zf-ZPR1 PF03367.8 gi|385775882|ref|YP_005648450.1| - 0.0045 16.1 0.7 0.01 14.9 0.4 1.6 1 1 1 2 2 2 1 ZPR1 zinc-finger domain Rubredoxin PF00301.15 gi|385775882|ref|YP_005648450.1| - 0.0047 16.7 2.4 1.3 8.9 0.1 2.4 2 0 0 2 2 2 1 Rubredoxin zf-nanos PF05741.8 gi|385775882|ref|YP_005648450.1| - 0.0061 16.5 1.2 1.7 8.6 0.0 2.2 1 1 0 2 2 2 1 Nanos RNA binding domain DUF4428 PF14471.1 gi|385775882|ref|YP_005648450.1| - 0.0068 16.1 2.1 1.7 8.4 0.0 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4428) TFIIS_C PF01096.13 gi|385775882|ref|YP_005648450.1| - 0.0072 15.9 3.3 0.13 11.9 0.2 2.4 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|385775882|ref|YP_005648450.1| - 0.0077 15.8 1.3 2.1 8.1 0.1 2.5 2 0 0 2 2 2 1 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|385775882|ref|YP_005648450.1| - 0.0078 15.7 5.2 0.51 9.9 0.4 2.7 2 1 0 2 2 2 1 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|385775882|ref|YP_005648450.1| - 0.012 15.2 1.4 3.8 7.2 0.1 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-Mss51 PF13824.1 gi|385775882|ref|YP_005648450.1| - 0.017 14.9 0.3 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.8 gi|385775882|ref|YP_005648450.1| - 0.021 14.2 1.3 2.3 7.7 0.2 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Gin PF10764.4 gi|385775882|ref|YP_005648450.1| - 0.023 14.3 0.2 0.74 9.5 0.0 2.4 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin Sgf11 PF08209.6 gi|385775882|ref|YP_005648450.1| - 0.025 13.8 3.0 2.9 7.2 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) A2L_zn_ribbon PF08792.5 gi|385775882|ref|YP_005648450.1| - 0.025 14.0 0.9 2.3 7.7 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Ogr_Delta PF04606.7 gi|385775882|ref|YP_005648450.1| - 0.027 14.1 1.5 4.4 7.0 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF4379 PF14311.1 gi|385775882|ref|YP_005648450.1| - 0.03 14.1 1.5 0.08 12.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) HypA PF01155.14 gi|385775882|ref|YP_005648450.1| - 0.033 13.8 0.1 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|385775882|ref|YP_005648450.1| - 0.037 13.7 6.9 0.62 9.7 0.6 2.8 3 0 0 3 3 2 0 zinc-ribbon domain Acetone_carb_G PF08882.6 gi|385775882|ref|YP_005648450.1| - 0.04 13.9 0.4 2.6 8.1 0.0 2.5 2 1 1 3 3 3 0 Acetone carboxylase gamma subunit IBR PF01485.16 gi|385775882|ref|YP_005648450.1| - 0.043 13.6 0.3 0.067 13.0 0.2 1.3 1 0 0 1 1 1 0 IBR domain zf-HIT PF04438.11 gi|385775882|ref|YP_005648450.1| - 0.053 13.1 1.7 0.85 9.3 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-RING_3 PF14369.1 gi|385775882|ref|YP_005648450.1| - 0.056 13.4 0.7 12 5.9 0.1 2.3 2 0 0 2 2 2 0 zinc-finger Cys_rich_CPXG PF14255.1 gi|385775882|ref|YP_005648450.1| - 0.065 13.0 2.4 3.3 7.6 0.0 2.7 3 0 0 3 3 2 0 Cysteine-rich CPXCG zf-H2C2_2 PF13465.1 gi|385775882|ref|YP_005648450.1| - 0.07 13.4 4.2 2.6 8.5 0.9 2.3 2 0 0 2 2 2 0 Zinc-finger double domain GFA PF04828.9 gi|385775882|ref|YP_005648450.1| - 0.088 12.7 1.9 1.1 9.1 0.1 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Elf1 PF05129.8 gi|385775882|ref|YP_005648450.1| - 0.1 12.3 2.3 0.58 9.8 0.1 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Trm112p PF03966.11 gi|385775882|ref|YP_005648450.1| - 0.11 12.9 0.4 0.39 11.1 0.3 1.9 1 1 0 1 1 1 0 Trm112p-like protein DUF1272 PF06906.6 gi|385775882|ref|YP_005648450.1| - 0.11 12.3 0.6 13 5.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-TFIIB PF13453.1 gi|385775882|ref|YP_005648450.1| - 0.12 11.6 0.1 10 5.4 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-Di19 PF05605.7 gi|385775882|ref|YP_005648450.1| - 0.12 12.5 0.4 14 5.8 0.0 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TerY-C PF15616.1 gi|385775882|ref|YP_005648450.1| - 0.12 12.2 1.6 7.7 6.4 0.1 2.2 2 1 0 2 2 2 0 TerY-C metal binding domain zf-C2H2 PF00096.21 gi|385775882|ref|YP_005648450.1| - 0.14 12.5 2.3 9 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type ADK_lid PF05191.9 gi|385775882|ref|YP_005648450.1| - 0.15 11.7 2.0 11 5.7 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid DNA_ligase_ZBD PF03119.11 gi|385775882|ref|YP_005648450.1| - 0.19 11.4 0.3 0.19 11.4 0.2 2.6 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prim_Zn_Ribbon PF08273.7 gi|385775882|ref|YP_005648450.1| - 0.61 10.2 3.2 19 5.4 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF329 PF03884.9 gi|385775882|ref|YP_005648450.1| - 0.72 9.4 4.9 3.6 7.2 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF329) DUF35_N PF12172.3 gi|385775882|ref|YP_005648450.1| - 1.4 8.9 3.5 10 6.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1451 PF07295.6 gi|385775882|ref|YP_005648450.1| - 8.7 6.1 6.2 1.2 8.8 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1451) DUF4118 PF13493.1 gi|385775883|ref|YP_005648451.1| - 0.41 10.8 8.2 0.61 10.3 5.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) Enolase_C PF00113.17 gi|385775884|ref|YP_005648452.1| - 6e-94 314.3 0.0 9.1e-94 313.7 0.0 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|385775884|ref|YP_005648452.1| - 6.4e-40 136.1 0.4 9.3e-40 135.6 0.3 1.2 1 0 0 1 1 1 1 Enolase, N-terminal domain Colicin_im PF03857.8 gi|385775885|ref|YP_005648453.1| - 0.12 12.1 2.5 0.14 11.9 1.7 1.2 1 0 0 1 1 1 0 Colicin immunity protein Cytochrom_C_asm PF01578.15 gi|385775885|ref|YP_005648453.1| - 0.2 11.1 3.0 0.27 10.7 2.1 1.4 1 1 0 1 1 1 0 Cytochrome C assembly protein DUF4131 PF13567.1 gi|385775885|ref|YP_005648453.1| - 0.29 10.5 5.0 0.33 10.3 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) zf-DHHC PF01529.15 gi|385775885|ref|YP_005648453.1| - 0.42 9.9 2.2 0.52 9.6 1.6 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase MARVEL PF01284.18 gi|385775885|ref|YP_005648453.1| - 0.68 9.7 5.3 0.8 9.5 3.7 1.1 1 0 0 1 1 1 0 Membrane-associating domain VPEP PF07589.6 gi|385775885|ref|YP_005648453.1| - 0.79 9.7 5.5 2.1 8.3 0.2 2.5 2 0 0 2 2 2 0 PEP-CTERM motif HIG_1_N PF04588.8 gi|385775885|ref|YP_005648453.1| - 1.9 8.3 7.4 8 6.2 0.3 2.2 2 0 0 2 2 2 0 Hypoxia induced protein conserved region DUF4282 PF14110.1 gi|385775885|ref|YP_005648453.1| - 2.5 8.3 7.8 3.6 7.8 5.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF872 PF05915.7 gi|385775885|ref|YP_005648453.1| - 3.1 7.6 6.0 2.8 7.8 3.6 1.4 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3955 PF13127.1 gi|385775885|ref|YP_005648453.1| - 3.3 7.3 11.2 1 8.9 1.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) Laminin_I PF06008.9 gi|385775886|ref|YP_005648454.1| - 0.0098 15.2 1.5 0.013 14.8 1.1 1.3 1 0 0 1 1 1 1 Laminin Domain I SHOCT PF09851.4 gi|385775886|ref|YP_005648454.1| - 0.038 13.4 1.2 0.12 11.8 0.8 1.9 1 0 0 1 1 1 0 Short C-terminal domain DUF724 PF05266.9 gi|385775886|ref|YP_005648454.1| - 0.12 11.9 4.7 0.21 11.2 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Syntaxin-6_N PF09177.6 gi|385775886|ref|YP_005648454.1| - 0.13 12.7 2.8 1.3 9.4 0.3 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal SPX PF03105.14 gi|385775886|ref|YP_005648454.1| - 0.14 11.8 8.2 0.26 11.0 5.7 1.5 1 1 0 1 1 1 0 SPX domain Exonuc_VII_L PF02601.10 gi|385775886|ref|YP_005648454.1| - 0.16 11.1 4.9 0.21 10.7 3.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit BLOC1_2 PF10046.4 gi|385775886|ref|YP_005648454.1| - 0.22 11.6 6.5 0.12 12.5 2.2 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.20 gi|385775886|ref|YP_005648454.1| - 0.29 11.3 10.6 2.6 8.2 7.4 2.4 1 1 0 1 1 1 0 Syntaxin DUF904 PF06005.7 gi|385775886|ref|YP_005648454.1| - 4 7.8 9.7 1.2 9.4 4.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Snf7 PF03357.16 gi|385775887|ref|YP_005648455.1| - 7.9e-06 25.3 2.1 1.4e-05 24.5 1.5 1.5 1 1 0 1 1 1 1 Snf7 Baculo_PEP_C PF04513.7 gi|385775887|ref|YP_005648455.1| - 0.0023 17.7 0.6 0.43 10.3 0.3 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_36 PF13730.1 gi|385775887|ref|YP_005648455.1| - 0.035 14.2 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|385775887|ref|YP_005648455.1| - 0.048 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 MarR family TMP_2 PF06791.8 gi|385775887|ref|YP_005648455.1| - 0.064 12.8 0.3 0.13 11.8 0.1 1.6 1 1 0 1 1 1 0 Prophage tail length tape measure protein TrmB PF01978.14 gi|385775887|ref|YP_005648455.1| - 0.14 11.8 0.9 1 9.1 0.1 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.24 gi|385775888|ref|YP_005648456.1| - 1.5e-39 135.2 0.0 8e-39 132.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|385775888|ref|YP_005648456.1| - 2.3e-15 56.2 3.5 2.3e-15 56.2 2.5 1.9 2 0 0 2 2 1 1 MIT (microtubule interacting and transport) domain AAA_14 PF13173.1 gi|385775888|ref|YP_005648456.1| - 4.2e-09 36.3 0.0 1.5e-08 34.5 0.0 2.0 2 1 0 2 2 1 1 AAA domain AAA_2 PF07724.9 gi|385775888|ref|YP_005648456.1| - 3.7e-07 30.1 0.0 1e-06 28.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Vps4_C PF09336.5 gi|385775888|ref|YP_005648456.1| - 2e-06 27.5 0.3 2.1e-05 24.3 0.0 2.3 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_22 PF13401.1 gi|385775888|ref|YP_005648456.1| - 2e-06 27.9 0.0 9.9e-06 25.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|385775888|ref|YP_005648456.1| - 3.7e-06 26.1 0.0 1.5e-05 24.2 0.0 2.0 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|385775888|ref|YP_005648456.1| - 8.3e-06 25.9 0.0 0.0022 18.0 0.0 2.8 2 1 1 3 3 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|385775888|ref|YP_005648456.1| - 1.6e-05 24.6 0.7 0.00035 20.3 0.0 3.1 3 1 0 3 3 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|385775888|ref|YP_005648456.1| - 1.9e-05 25.4 0.1 7.5e-05 23.5 0.0 2.1 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|385775888|ref|YP_005648456.1| - 3.8e-05 23.1 0.1 0.023 14.1 0.0 2.5 1 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|385775888|ref|YP_005648456.1| - 5.1e-05 22.9 0.1 0.0003 20.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain TPR_11 PF13414.1 gi|385775888|ref|YP_005648456.1| - 6.6e-05 22.4 0.3 0.00018 21.1 0.2 1.7 1 1 0 1 1 1 1 TPR repeat Arch_ATPase PF01637.13 gi|385775888|ref|YP_005648456.1| - 0.00015 21.5 2.7 0.24 11.0 0.2 2.9 2 1 1 3 3 3 2 Archaeal ATPase TIP49 PF06068.8 gi|385775888|ref|YP_005648456.1| - 0.00058 18.6 0.1 0.0013 17.4 0.0 1.5 1 1 0 1 1 1 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|385775888|ref|YP_005648456.1| - 0.0017 17.5 0.0 0.0038 16.4 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|385775888|ref|YP_005648456.1| - 0.0017 17.4 0.0 0.0034 16.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin TPR_1 PF00515.23 gi|385775888|ref|YP_005648456.1| - 0.0019 17.7 0.3 0.005 16.3 0.2 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat ATP-synt_ab PF00006.20 gi|385775888|ref|YP_005648456.1| - 0.0047 16.4 0.0 0.0088 15.5 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|385775888|ref|YP_005648456.1| - 0.0058 16.7 0.0 0.018 15.1 0.0 1.9 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.1 gi|385775888|ref|YP_005648456.1| - 0.0064 16.4 0.0 0.024 14.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|385775888|ref|YP_005648456.1| - 0.011 15.1 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein KAP_NTPase PF07693.9 gi|385775888|ref|YP_005648456.1| - 0.012 14.6 0.2 0.14 11.0 0.0 2.2 2 1 1 3 3 3 0 KAP family P-loop domain AAA_18 PF13238.1 gi|385775888|ref|YP_005648456.1| - 0.013 15.8 0.0 0.036 14.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|385775888|ref|YP_005648456.1| - 0.014 15.0 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_19 PF13245.1 gi|385775888|ref|YP_005648456.1| - 0.016 14.9 0.0 0.039 13.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|385775888|ref|YP_005648456.1| - 0.017 14.9 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|385775888|ref|YP_005648456.1| - 0.018 14.5 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|385775888|ref|YP_005648456.1| - 0.019 14.6 0.0 0.065 12.8 0.0 1.8 1 1 1 2 2 2 0 NACHT domain TPR_7 PF13176.1 gi|385775888|ref|YP_005648456.1| - 0.021 14.5 0.1 0.75 9.7 0.0 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat ResIII PF04851.10 gi|385775888|ref|YP_005648456.1| - 0.022 14.5 0.0 0.072 12.9 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|385775888|ref|YP_005648456.1| - 0.026 13.3 0.0 0.051 12.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|385775888|ref|YP_005648456.1| - 0.029 14.6 0.0 0.22 11.8 0.0 2.1 2 0 0 2 2 2 0 ABC transporter AAA_10 PF12846.2 gi|385775888|ref|YP_005648456.1| - 0.029 13.7 0.0 5.1 6.4 0.0 2.8 3 0 0 3 3 3 0 AAA-like domain DUF815 PF05673.8 gi|385775888|ref|YP_005648456.1| - 0.032 13.1 0.0 0.076 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|385775888|ref|YP_005648456.1| - 0.039 13.9 0.0 0.73 9.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain TPR_2 PF07719.12 gi|385775888|ref|YP_005648456.1| - 0.044 13.7 1.2 0.1 12.5 0.2 2.2 2 0 0 2 2 1 0 Tetratricopeptide repeat SKI PF01202.17 gi|385775888|ref|YP_005648456.1| - 0.056 13.3 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase Parvo_NS1 PF01057.12 gi|385775888|ref|YP_005648456.1| - 0.063 12.1 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|385775888|ref|YP_005648456.1| - 0.098 12.1 0.0 0.51 9.7 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain TPR_6 PF13174.1 gi|385775888|ref|YP_005648456.1| - 0.1 13.0 1.0 9.5 6.9 0.0 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|385775888|ref|YP_005648456.1| - 0.13 12.0 2.6 3.8 7.5 0.1 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat DnaB_2 PF07261.6 gi|385775888|ref|YP_005648456.1| - 0.25 10.9 2.7 1.2 8.7 0.5 2.9 3 0 0 3 3 2 0 Replication initiation and membrane attachment Topoisom_bac PF01131.15 gi|385775889|ref|YP_005648457.1| - 7.5e-97 324.6 0.0 9.5e-97 324.3 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|385775889|ref|YP_005648457.1| - 3.4e-11 43.0 0.1 1.3e-10 41.1 0.0 2.1 2 0 0 2 2 2 1 Toprim domain RNA_pol_Rpb6 PF01192.17 gi|385775890|ref|YP_005648458.1| - 1.8e-17 62.7 0.1 2.2e-17 62.5 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Aminotran_5 PF00266.14 gi|385775891|ref|YP_005648459.1| - 5e-28 97.8 0.0 6.4e-28 97.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|385775891|ref|YP_005648459.1| - 2.1e-05 23.0 0.0 3.1e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|385775891|ref|YP_005648459.1| - 0.00021 20.3 0.0 0.00033 19.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|385775891|ref|YP_005648459.1| - 0.00044 19.4 0.0 0.00098 18.3 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase 2-Hacid_dh_C PF02826.14 gi|385775892|ref|YP_005648460.1| - 4.1e-46 156.3 0.3 7.7e-46 155.4 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|385775892|ref|YP_005648460.1| - 1.7e-31 108.4 1.3 2.1e-31 108.1 0.9 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|385775892|ref|YP_005648460.1| - 3.9e-10 39.8 0.5 8.4e-10 38.7 0.3 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|385775892|ref|YP_005648460.1| - 9.4e-07 28.8 0.7 9.4e-07 28.8 0.5 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|385775892|ref|YP_005648460.1| - 0.0027 17.1 0.3 0.0051 16.2 0.2 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|385775892|ref|YP_005648460.1| - 0.0029 18.0 0.6 0.0079 16.6 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|385775892|ref|YP_005648460.1| - 0.0031 17.2 0.1 0.006 16.2 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|385775892|ref|YP_005648460.1| - 0.005 17.3 0.6 0.016 15.6 0.4 1.9 1 0 0 1 1 1 1 CoA binding domain DapB_N PF01113.15 gi|385775892|ref|YP_005648460.1| - 0.0096 15.8 0.7 0.068 13.0 0.3 2.5 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus XdhC_C PF13478.1 gi|385775892|ref|YP_005648460.1| - 0.072 13.3 0.1 9.4 6.5 0.0 2.8 2 1 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|385775892|ref|YP_005648460.1| - 0.081 13.1 2.3 0.16 12.2 0.6 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|385775892|ref|YP_005648460.1| - 0.087 13.3 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|385775892|ref|YP_005648460.1| - 0.14 11.8 2.0 0.32 10.7 0.4 2.3 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HhH-GPD PF00730.20 gi|385775893|ref|YP_005648461.1| - 3.8e-08 33.5 0.0 5.3e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF3427 PF11907.3 gi|385775893|ref|YP_005648461.1| - 0.0025 16.8 0.2 0.0035 16.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3427) LEDGF PF11467.3 gi|385775893|ref|YP_005648461.1| - 0.098 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Lens epithelium-derived growth factor (LEDGF) DNA_pol_lambd_f PF10391.4 gi|385775893|ref|YP_005648461.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DZR PF12773.2 gi|385775895|ref|YP_005648463.1| - 0.0011 18.7 6.4 0.021 14.6 3.2 2.2 1 1 1 2 2 2 2 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|385775895|ref|YP_005648463.1| - 0.005 17.0 7.3 0.089 13.1 0.2 3.1 3 0 0 3 3 3 1 Zinc-finger double domain Prok-RING_1 PF14446.1 gi|385775895|ref|YP_005648463.1| - 0.0062 16.2 6.3 0.066 12.9 1.8 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 Rep_fac-A_C PF08646.5 gi|385775895|ref|YP_005648463.1| - 0.032 13.9 2.9 0.044 13.4 2.0 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-C4_Topoisom PF01396.14 gi|385775895|ref|YP_005648463.1| - 0.035 13.6 7.9 0.61 9.6 0.3 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-BED PF02892.10 gi|385775895|ref|YP_005648463.1| - 0.042 13.5 12.2 0.79 9.5 0.2 3.2 1 1 2 3 3 3 0 BED zinc finger C1_2 PF03107.11 gi|385775895|ref|YP_005648463.1| - 0.054 13.6 5.5 0.064 13.3 2.1 2.2 2 1 0 2 2 2 0 C1 domain zinc_ribbon_2 PF13240.1 gi|385775895|ref|YP_005648463.1| - 0.055 12.9 0.5 0.055 12.9 0.3 3.2 3 1 0 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|385775895|ref|YP_005648463.1| - 0.065 12.7 7.6 0.2 11.1 0.9 2.7 2 1 1 3 3 3 0 A2L zinc ribbon domain HypA PF01155.14 gi|385775895|ref|YP_005648463.1| - 0.082 12.6 3.5 0.27 10.9 0.8 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|385775895|ref|YP_005648463.1| - 0.087 12.6 7.2 0.59 10.0 5.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-B_box PF00643.19 gi|385775895|ref|YP_005648463.1| - 0.11 12.4 7.9 0.96 9.3 3.8 2.7 2 1 0 2 2 2 0 B-box zinc finger zf-ribbon_3 PF13248.1 gi|385775895|ref|YP_005648463.1| - 0.11 11.7 0.6 0.11 11.7 0.4 3.2 3 1 0 3 3 3 0 zinc-ribbon domain DUF4379 PF14311.1 gi|385775895|ref|YP_005648463.1| - 0.14 11.9 2.5 0.29 10.9 1.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) zf-AN1 PF01428.11 gi|385775895|ref|YP_005648463.1| - 0.17 11.8 8.3 2.3 8.1 1.6 2.7 1 1 2 3 3 3 0 AN1-like Zinc finger zf-C3HC4_3 PF13920.1 gi|385775895|ref|YP_005648463.1| - 0.22 11.2 9.1 3.7 7.2 2.4 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.11 gi|385775895|ref|YP_005648463.1| - 0.23 11.1 0.3 0.23 11.1 0.2 2.8 3 1 1 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-tcix PF14952.1 gi|385775895|ref|YP_005648463.1| - 0.23 10.8 9.1 0.2 10.9 1.4 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Sgf11 PF08209.6 gi|385775895|ref|YP_005648463.1| - 0.41 9.9 5.5 15 4.9 0.1 3.2 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-C3HC4_2 PF13923.1 gi|385775895|ref|YP_005648463.1| - 0.45 10.5 6.0 1.8 8.6 0.7 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.7 gi|385775895|ref|YP_005648463.1| - 0.46 10.2 3.6 13 5.7 0.8 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-IS66 PF13005.2 gi|385775895|ref|YP_005648463.1| - 0.51 10.3 0.1 0.51 10.3 0.1 2.6 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.1 gi|385775895|ref|YP_005648463.1| - 0.52 9.5 5.4 3.3 6.9 0.1 2.5 3 0 0 3 3 2 0 Transcription factor zinc-finger zf-C2HC5 PF06221.8 gi|385775895|ref|YP_005648463.1| - 0.53 10.0 6.5 0.75 9.6 2.2 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-RING_3 PF14369.1 gi|385775895|ref|YP_005648463.1| - 0.71 9.9 7.2 1.4 8.9 0.2 2.5 2 1 0 2 2 2 0 zinc-finger zf-RING_4 PF14570.1 gi|385775895|ref|YP_005648463.1| - 0.72 9.4 8.7 1.4 8.5 1.9 2.3 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Mu-like_Com PF10122.4 gi|385775895|ref|YP_005648463.1| - 0.75 8.9 7.7 3.5 6.7 1.5 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com C1_1 PF00130.17 gi|385775895|ref|YP_005648463.1| - 0.83 9.4 5.8 1.5 8.6 1.3 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.1 gi|385775895|ref|YP_005648463.1| - 0.87 10.0 12.4 3 8.3 1.3 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger DUF329 PF03884.9 gi|385775895|ref|YP_005648463.1| - 1.1 8.8 8.4 8.1 6.0 0.9 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF329) zinc_ribbon_4 PF13717.1 gi|385775895|ref|YP_005648463.1| - 1.3 8.7 11.7 0.39 10.4 4.7 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385775895|ref|YP_005648463.1| - 1.4 8.5 11.0 0.64 9.6 4.7 2.4 2 1 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385775895|ref|YP_005648463.1| - 1.6 8.4 6.0 3 7.5 0.9 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-LITAF-like PF10601.4 gi|385775895|ref|YP_005648463.1| - 1.7 8.5 8.0 15 5.4 0.4 3.0 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain TerY-C PF15616.1 gi|385775895|ref|YP_005648463.1| - 2 8.3 7.9 15 5.5 0.3 2.4 1 1 2 3 3 3 0 TerY-C metal binding domain TF_Zn_Ribbon PF08271.7 gi|385775895|ref|YP_005648463.1| - 2 7.7 10.3 2.9 7.2 0.2 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding DUF581 PF04570.9 gi|385775895|ref|YP_005648463.1| - 2 7.7 6.4 1.6 8.0 2.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF581) Lar_restr_allev PF14354.1 gi|385775895|ref|YP_005648463.1| - 2.2 8.6 8.6 2.5 8.4 3.6 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|385775895|ref|YP_005648463.1| - 2.4 8.2 10.4 1.4 8.9 5.1 2.1 2 1 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|385775895|ref|YP_005648463.1| - 2.5 8.2 8.0 13 5.8 0.1 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.21 gi|385775895|ref|YP_005648463.1| - 2.6 8.5 13.6 2.8 8.4 1.6 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type DiS_P_DiS PF06750.8 gi|385775895|ref|YP_005648463.1| - 3 7.7 5.2 17 5.3 0.0 2.8 2 1 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain TFIIS_C PF01096.13 gi|385775895|ref|YP_005648463.1| - 3 7.5 8.7 0.87 9.2 0.4 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Zn_ribbon_recom PF13408.1 gi|385775895|ref|YP_005648463.1| - 3.2 8.0 13.0 22 5.4 9.2 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-UBR PF02207.15 gi|385775895|ref|YP_005648463.1| - 3.8 7.3 6.9 2.4 7.9 3.6 1.7 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Ribosomal_S27e PF01667.12 gi|385775895|ref|YP_005648463.1| - 3.8 7.1 8.5 48 3.6 0.0 2.9 2 1 0 2 2 2 0 Ribosomal protein S27 zf-C3HC4 PF00097.20 gi|385775895|ref|YP_005648463.1| - 4 7.1 7.6 1.7 8.3 1.6 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) ADK_lid PF05191.9 gi|385775895|ref|YP_005648463.1| - 4 7.1 9.1 2.4 7.9 3.2 2.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-MYND PF01753.13 gi|385775895|ref|YP_005648463.1| - 4.1 7.3 7.5 50 3.8 5.2 2.2 1 1 0 1 1 1 0 MYND finger zf-CHY PF05495.7 gi|385775895|ref|YP_005648463.1| - 4.1 7.6 8.3 53 4.0 5.8 2.3 1 1 0 1 1 1 0 CHY zinc finger Zn_Tnp_IS1595 PF12760.2 gi|385775895|ref|YP_005648463.1| - 4.3 7.2 11.6 8.1 6.3 3.5 2.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|385775895|ref|YP_005648463.1| - 4.8 6.9 11.7 1.1 8.9 0.2 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-RING_2 PF13639.1 gi|385775895|ref|YP_005648463.1| - 5.8 6.8 7.1 25 4.7 4.9 2.0 1 1 0 1 1 1 0 Ring finger domain FANCL_C PF11793.3 gi|385775895|ref|YP_005648463.1| - 5.8 6.9 9.9 2.5 8.1 0.2 2.6 2 1 0 2 2 2 0 FANCL C-terminal domain zf-Di19 PF05605.7 gi|385775895|ref|YP_005648463.1| - 6.5 6.9 10.7 4.3 7.5 0.2 3.1 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Tnp_zf-ribbon_2 PF13842.1 gi|385775895|ref|YP_005648463.1| - 7.8 6.9 12.7 30 5.1 8.8 2.1 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon zf-HIT PF04438.11 gi|385775895|ref|YP_005648463.1| - 9.9 5.9 17.2 42 3.8 0.2 3.0 2 1 0 2 2 2 0 HIT zinc finger zf-RING_5 PF14634.1 gi|385775895|ref|YP_005648463.1| - 10 5.9 10.7 2.2e+03 -1.6 7.4 2.7 1 1 0 1 1 1 0 zinc-RING finger domain DUF1829 PF08862.5 gi|385775896|ref|YP_005648464.1| - 1.1 9.5 3.6 8.4 6.7 0.2 2.4 1 1 2 3 3 3 0 Domain of unknown function DUF1829 DUF4488 PF14869.1 gi|385775897|ref|YP_005648465.1| - 0.037 13.5 0.3 0.058 12.9 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4488) HPS3_C PF14763.1 gi|385775897|ref|YP_005648465.1| - 0.04 12.8 0.1 0.046 12.7 0.0 1.0 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3, C-terminal DNA_pol3_delta PF06144.8 gi|385775897|ref|YP_005648465.1| - 0.083 12.3 0.0 0.13 11.7 0.0 1.5 1 1 1 2 2 2 0 DNA polymerase III, delta subunit Met_10 PF02475.11 gi|385775898|ref|YP_005648466.1| - 0.017 14.7 0.8 0.023 14.2 0.3 1.4 1 1 0 1 1 1 0 Met-10+ like-protein NAD_binding_8 PF13450.1 gi|385775899|ref|YP_005648467.1| - 0.00019 21.3 0.0 0.00058 19.8 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|385775899|ref|YP_005648467.1| - 0.00031 20.1 0.0 0.00057 19.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|385775899|ref|YP_005648467.1| - 0.0024 18.2 0.0 0.0072 16.7 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|385775899|ref|YP_005648467.1| - 0.0065 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|385775899|ref|YP_005648467.1| - 0.0099 14.8 0.1 0.017 14.0 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|385775899|ref|YP_005648467.1| - 0.06 12.9 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|385775899|ref|YP_005648467.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.11 gi|385775899|ref|YP_005648467.1| - 0.15 11.4 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA tRNA-synt_1 PF00133.17 gi|385775900|ref|YP_005648468.1| - 2.6e-122 408.8 0.3 2e-121 405.9 0.2 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|385775900|ref|YP_005648468.1| - 2e-31 108.8 3.3 5.3e-31 107.4 2.0 2.1 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|385775900|ref|YP_005648468.1| - 7e-27 94.0 0.2 1.3e-11 43.8 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|385775900|ref|YP_005648468.1| - 5.6e-06 25.7 0.2 0.00071 18.9 0.1 3.0 1 1 2 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|385775900|ref|YP_005648468.1| - 0.00024 20.0 0.0 0.056 12.2 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1e PF01406.14 gi|385775900|ref|YP_005648468.1| - 0.0035 16.5 0.0 0.21 10.6 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Aminotran_1_2 PF00155.16 gi|385775901|ref|YP_005648469.1| - 3.6e-82 276.2 0.0 4.2e-82 276.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|385775901|ref|YP_005648469.1| - 4.5e-11 42.4 0.0 6.5e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|385775901|ref|YP_005648469.1| - 1.1e-07 30.9 0.0 3.3e-07 29.3 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|385775901|ref|YP_005648469.1| - 0.00012 21.3 0.0 0.0002 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SfsA PF03749.8 gi|385775901|ref|YP_005648469.1| - 0.00045 19.7 0.1 0.0017 17.8 0.0 1.8 2 0 0 2 2 2 1 Sugar fermentation stimulation protein Cys_Met_Meta_PP PF01053.15 gi|385775901|ref|YP_005648469.1| - 0.0011 17.3 0.0 0.0017 16.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme IGPS PF00218.16 gi|385775902|ref|YP_005648470.1| - 4.2e-82 275.0 0.3 4.8e-82 274.8 0.2 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|385775902|ref|YP_005648470.1| - 9.7e-07 28.2 0.2 0.00082 18.7 0.0 2.6 1 1 2 3 3 3 2 Histidine biosynthesis protein NeuB PF03102.9 gi|385775902|ref|YP_005648470.1| - 0.029 13.4 0.0 0.68 9.0 0.0 2.1 1 1 1 2 2 2 0 NeuB family ThiG PF05690.9 gi|385775902|ref|YP_005648470.1| - 0.039 13.0 0.0 0.27 10.2 0.0 2.0 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|385775902|ref|YP_005648470.1| - 0.044 12.8 0.0 0.16 11.0 0.0 2.0 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI NanE PF04131.9 gi|385775902|ref|YP_005648470.1| - 0.09 11.7 0.1 0.2 10.6 0.0 1.7 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.14 gi|385775902|ref|YP_005648470.1| - 0.11 11.9 0.1 0.2 11.1 0.1 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain GATase PF00117.23 gi|385775903|ref|YP_005648471.1| - 3.1e-50 170.3 0.0 3.4e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385775903|ref|YP_005648471.1| - 5.1e-14 52.2 0.0 8.7e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|385775904|ref|YP_005648472.1| - 1.7e-94 315.9 0.0 2.1e-94 315.6 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|385775904|ref|YP_005648472.1| - 2.9e-20 72.7 0.0 7.5e-20 71.3 0.0 1.8 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|385775905|ref|YP_005648473.1| - 2.5e-35 121.8 0.0 2.9e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CYTH PF01928.16 gi|385775905|ref|YP_005648473.1| - 0.1 12.2 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 CYTH domain Glycos_transf_3 PF00591.16 gi|385775906|ref|YP_005648474.1| - 2.5e-74 249.8 0.0 3.5e-74 249.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|385775906|ref|YP_005648474.1| - 3.4e-21 74.5 0.4 5.5e-21 73.9 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Trp_syntA PF00290.15 gi|385775907|ref|YP_005648475.1| - 1.7e-36 125.0 0.0 2e-36 124.8 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|385775907|ref|YP_005648475.1| - 3.6e-05 23.1 0.2 0.00012 21.4 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|385775907|ref|YP_005648475.1| - 0.00043 19.6 0.0 0.00089 18.5 0.0 1.6 1 0 0 1 1 1 1 PcrB family NMO PF03060.10 gi|385775907|ref|YP_005648475.1| - 0.0066 15.6 0.1 0.013 14.6 0.0 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.12 gi|385775907|ref|YP_005648475.1| - 0.013 14.6 0.1 0.026 13.6 0.0 1.5 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|385775907|ref|YP_005648475.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase PALP PF00291.20 gi|385775908|ref|YP_005648476.1| - 5.6e-37 127.6 0.0 7.6e-37 127.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acylphosphatase PF00708.13 gi|385775909|ref|YP_005648477.1| - 2e-29 101.5 0.0 2.1e-29 101.4 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase NAD_binding_5 PF07994.7 gi|385775910|ref|YP_005648478.1| - 8.1e-50 169.9 0.0 2.4e-49 168.3 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|385775910|ref|YP_005648478.1| - 5.2e-29 100.3 0.0 9.4e-29 99.5 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase FYVE PF01363.16 gi|385775911|ref|YP_005648479.1| - 0.013 15.3 32.7 25 4.8 13.8 3.8 1 1 1 2 2 2 0 FYVE zinc finger Sgf11 PF08209.6 gi|385775911|ref|YP_005648479.1| - 0.041 13.1 1.4 0.041 13.1 1.0 4.9 4 2 3 7 7 7 0 Sgf11 (transcriptional regulation protein) zf-HIT PF04438.11 gi|385775911|ref|YP_005648479.1| - 0.041 13.5 2.6 0.041 13.5 1.8 5.0 2 1 2 4 4 4 0 HIT zinc finger zf-B_box PF00643.19 gi|385775911|ref|YP_005648479.1| - 0.53 10.2 32.5 1.5 8.8 6.3 4.0 3 1 1 4 4 4 0 B-box zinc finger PPDK_N PF01326.14 gi|385775912|ref|YP_005648480.1| - 3.8e-100 335.1 0.2 8.2e-100 334.0 0.1 1.5 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|385775912|ref|YP_005648480.1| - 1.1e-82 277.2 0.0 1.9e-82 276.4 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|385775912|ref|YP_005648480.1| - 7e-27 92.8 0.4 1.9e-26 91.4 0.3 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Snf7 PF03357.16 gi|385775913|ref|YP_005648481.1| - 1.9e-05 24.1 1.9 2.6e-05 23.6 1.3 1.4 1 1 0 1 1 1 1 Snf7 LOH1CR12 PF10158.4 gi|385775913|ref|YP_005648481.1| - 0.00079 19.2 0.2 0.0016 18.1 0.1 1.6 1 0 0 1 1 1 1 Tumour suppressor protein Pox_F11 PF04943.7 gi|385775913|ref|YP_005648481.1| - 0.0022 16.9 0.1 0.0024 16.8 0.1 1.2 1 0 0 1 1 1 1 Poxvirus F11 protein DUF1212 PF06738.7 gi|385775913|ref|YP_005648481.1| - 0.012 15.0 0.1 0.019 14.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) UbiD PF01977.11 gi|385775915|ref|YP_005648483.1| - 6.7e-136 452.9 0.0 7.7e-136 452.7 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PALP PF00291.20 gi|385775916|ref|YP_005648484.1| - 2.1e-74 250.5 0.8 2.5e-74 250.2 0.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.14 gi|385775916|ref|YP_005648484.1| - 0.0093 15.6 0.1 0.016 14.8 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|385775916|ref|YP_005648484.1| - 0.019 14.1 0.1 0.035 13.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|385775916|ref|YP_005648484.1| - 0.042 13.5 0.9 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit AA_kinase PF00696.23 gi|385775917|ref|YP_005648485.1| - 1.2e-46 159.2 0.5 2.1e-46 158.4 0.1 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT PF01842.20 gi|385775917|ref|YP_005648485.1| - 8.3e-07 28.3 1.8 0.00038 19.8 0.1 3.0 3 0 0 3 3 3 2 ACT domain T2SM PF04612.7 gi|385775917|ref|YP_005648485.1| - 0.056 13.2 0.0 0.094 12.5 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M DUF1327 PF07041.6 gi|385775917|ref|YP_005648485.1| - 0.067 13.0 0.2 0.2 11.5 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1327) Semialdhyde_dh PF01118.19 gi|385775918|ref|YP_005648486.1| - 5.6e-33 113.8 0.0 9.4e-33 113.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|385775918|ref|YP_005648486.1| - 7.7e-27 94.3 0.0 1.1e-26 93.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|385775918|ref|YP_005648486.1| - 0.0021 17.9 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|385775918|ref|YP_005648486.1| - 0.025 15.1 0.0 0.71 10.4 0.0 2.5 3 0 0 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.1 gi|385775918|ref|YP_005648486.1| - 0.03 14.3 0.0 0.29 11.1 0.0 2.3 2 0 0 2 2 2 0 NADH(P)-binding Ldh_1_N PF00056.18 gi|385775918|ref|YP_005648486.1| - 0.053 13.3 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|385775918|ref|YP_005648486.1| - 0.075 13.5 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|385775918|ref|YP_005648486.1| - 0.12 11.8 0.2 0.48 9.8 0.0 2.1 3 0 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PHP_C PF13263.1 gi|385775919|ref|YP_005648487.1| - 1.1e-12 47.2 0.0 2.6e-12 46.0 0.0 1.7 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|385775919|ref|YP_005648487.1| - 3.1e-07 30.3 0.1 1.2e-06 28.4 0.1 1.9 1 1 0 1 1 1 1 PHP domain MCM_N PF14551.1 gi|385775919|ref|YP_005648487.1| - 0.11 13.0 0.2 0.19 12.2 0.1 1.4 2 0 0 2 2 2 0 MCM N-terminal domain DUF3135 PF11333.3 gi|385775919|ref|YP_005648487.1| - 0.13 12.4 0.2 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) DUF650 PF04894.7 gi|385775920|ref|YP_005648488.1| - 1.2e-98 329.9 0.1 1.8e-98 329.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|385775920|ref|YP_005648488.1| - 5.1e-36 122.6 0.2 8.7e-36 121.8 0.1 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) OTCace PF00185.19 gi|385775921|ref|YP_005648489.1| - 3.9e-50 169.8 0.0 5.5e-50 169.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|385775921|ref|YP_005648489.1| - 6.1e-40 136.1 0.0 9.3e-40 135.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF4056 PF13265.1 gi|385775921|ref|YP_005648489.1| - 0.059 12.3 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4056) HTH_45 PF14947.1 gi|385775922|ref|YP_005648490.1| - 0.00085 19.0 0.2 0.0019 17.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix Ribosomal_S19e PF01090.14 gi|385775922|ref|YP_005648490.1| - 0.0046 16.3 0.1 0.0077 15.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_24 PF13412.1 gi|385775922|ref|YP_005648490.1| - 0.014 14.7 1.5 0.028 13.8 0.3 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF4443 PF14544.1 gi|385775922|ref|YP_005648490.1| - 0.023 14.5 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) Penicillinase_R PF03965.11 gi|385775922|ref|YP_005648490.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor NAD_kinase PF01513.16 gi|385775923|ref|YP_005648491.1| - 2.5e-65 220.1 0.2 2.8e-65 219.9 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|385775923|ref|YP_005648491.1| - 4.9e-06 26.0 0.1 2e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Lysine_decarbox PF03641.9 gi|385775923|ref|YP_005648491.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Possible lysine decarboxylase Rrf2 PF02082.15 gi|385775924|ref|YP_005648492.1| - 0.0019 18.3 0.0 0.064 13.3 0.0 2.6 2 1 0 2 2 2 1 Transcriptional regulator HTH_45 PF14947.1 gi|385775924|ref|YP_005648492.1| - 0.0079 15.9 1.0 0.016 15.0 0.0 2.0 2 1 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.14 gi|385775924|ref|YP_005648492.1| - 0.013 15.2 0.3 0.086 12.5 0.0 2.4 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GET2 PF08690.5 gi|385775924|ref|YP_005648492.1| - 0.033 13.4 0.5 0.06 12.5 0.4 1.4 1 0 0 1 1 1 0 GET complex subunit GET2 MarR_2 PF12802.2 gi|385775924|ref|YP_005648492.1| - 0.057 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|385775924|ref|YP_005648492.1| - 0.074 12.7 0.0 0.42 10.3 0.0 2.3 2 1 2 4 4 4 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|385775924|ref|YP_005648492.1| - 0.075 12.7 0.0 1.2 8.9 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.1 gi|385775924|ref|YP_005648492.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Terminase_5 PF06056.7 gi|385775924|ref|YP_005648492.1| - 0.3 10.6 2.1 0.57 9.7 0.2 2.3 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Med4 PF10018.4 gi|385775925|ref|YP_005648493.1| - 0.044 13.1 0.2 0.046 13.1 0.1 1.1 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Transcrip_reg PF01709.15 gi|385775925|ref|YP_005648493.1| - 0.061 12.4 0.3 0.077 12.1 0.2 1.2 1 0 0 1 1 1 0 Transcriptional regulator Ribosomal_L20 PF00453.13 gi|385775925|ref|YP_005648493.1| - 0.18 11.7 2.4 0.13 12.2 0.7 1.6 2 0 0 2 2 2 0 Ribosomal protein L20 ABC_tran_2 PF12848.2 gi|385775925|ref|YP_005648493.1| - 0.31 10.9 5.1 0.55 10.1 3.5 1.4 1 0 0 1 1 1 0 ABC transporter FKBP_N PF01346.13 gi|385775925|ref|YP_005648493.1| - 0.39 10.7 3.1 0.55 10.2 2.1 1.3 1 0 0 1 1 1 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DUF4355 PF14265.1 gi|385775925|ref|YP_005648493.1| - 0.69 9.8 8.4 0.3 11.0 4.4 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) DEAD_2 PF06733.10 gi|385775925|ref|YP_005648493.1| - 0.83 9.0 5.2 0.45 9.8 1.4 1.8 1 1 1 2 2 2 0 DEAD_2 DUF4065 PF13274.1 gi|385775926|ref|YP_005648494.1| - 0.57 10.8 6.0 9.5 6.9 1.9 2.8 2 2 2 4 4 4 0 Protein of unknown function (DUF4065) Eapp_C PF10238.4 gi|385775926|ref|YP_005648494.1| - 1.4 8.7 5.0 7.1 6.5 3.5 2.0 1 1 0 1 1 1 0 E2F-associated phosphoprotein Cpn60_TCP1 PF00118.19 gi|385775927|ref|YP_005648495.1| - 5.2e-159 529.9 12.0 5.9e-159 529.7 8.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HHH_5 PF14520.1 gi|385775928|ref|YP_005648496.1| - 0.0071 16.4 0.1 0.011 15.8 0.1 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain APG17 PF04108.7 gi|385775928|ref|YP_005648496.1| - 0.014 14.2 0.1 0.016 14.0 0.1 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 SapB_1 PF05184.10 gi|385775928|ref|YP_005648496.1| - 0.017 14.9 0.9 0.035 13.9 0.6 1.5 1 0 0 1 1 1 0 Saposin-like type B, region 1 DUF2095 PF09868.4 gi|385775928|ref|YP_005648496.1| - 0.047 13.4 0.0 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2095) Bac_DNA_binding PF00216.16 gi|385775928|ref|YP_005648496.1| - 0.12 12.4 0.6 0.25 11.3 0.4 1.5 1 0 0 1 1 1 0 Bacterial DNA-binding protein TrmB PF01978.14 gi|385775929|ref|YP_005648497.1| - 0.0031 17.1 0.1 0.0046 16.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|385775929|ref|YP_005648497.1| - 0.021 15.2 0.1 0.027 14.9 0.1 1.2 1 0 0 1 1 1 0 Replication protein A C terminal DUF4423 PF14394.1 gi|385775929|ref|YP_005648497.1| - 0.03 13.8 0.1 0.043 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) APC2 PF08672.6 gi|385775929|ref|YP_005648497.1| - 0.031 14.5 2.0 0.24 11.6 0.6 2.5 1 1 1 2 2 2 0 Anaphase promoting complex (APC) subunit 2 DUF1500 PF07389.7 gi|385775929|ref|YP_005648497.1| - 0.036 14.0 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1500) DUF763 PF05559.6 gi|385775929|ref|YP_005648497.1| - 0.074 11.9 0.1 0.083 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF763) Stork_head PF10264.4 gi|385775929|ref|YP_005648497.1| - 0.085 13.0 0.1 7.6 6.7 0.0 2.1 1 1 1 2 2 2 0 Winged helix Storkhead-box1 domain DUF3253 PF11625.3 gi|385775929|ref|YP_005648497.1| - 0.12 12.2 0.0 0.66 9.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) DDE_Tnp_1_assoc PF13808.1 gi|385775929|ref|YP_005648497.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.4 1 1 0 1 1 1 0 DDE_Tnp_1-associated EF-hand_8 PF13833.1 gi|385775929|ref|YP_005648497.1| - 0.23 11.0 0.7 3.8 7.1 0.5 2.2 1 1 0 1 1 1 0 EF-hand domain pair tRNA-synt_1d PF00750.14 gi|385775931|ref|YP_005648499.1| - 4.1e-44 150.8 0.6 1.4e-22 80.0 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|385775931|ref|YP_005648499.1| - 4.7e-29 100.7 0.2 2.3e-28 98.5 0.1 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|385775931|ref|YP_005648499.1| - 6.4e-07 29.8 0.7 2.5e-06 27.9 0.0 2.5 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1g PF09334.6 gi|385775931|ref|YP_005648499.1| - 0.00011 21.0 0.0 0.032 12.8 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|385775931|ref|YP_005648499.1| - 0.00022 20.4 0.4 0.37 9.8 0.0 2.9 2 2 1 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|385775931|ref|YP_005648499.1| - 0.016 13.9 0.5 0.18 10.4 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (K) BP28CT PF08146.7 gi|385775931|ref|YP_005648499.1| - 0.05 13.3 0.1 0.2 11.3 0.1 2.0 1 0 0 1 1 1 0 BP28CT (NUC211) domain UPF0147 PF03685.8 gi|385775932|ref|YP_005648500.1| - 3.8e-38 129.2 1.3 4.2e-38 129.0 0.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|385775932|ref|YP_005648500.1| - 0.0093 16.0 0.3 0.45 10.6 0.1 2.1 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.7 gi|385775933|ref|YP_005648501.1| - 3e-20 71.6 1.0 4.4e-20 71.1 0.7 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2043 PF09740.4 gi|385775933|ref|YP_005648501.1| - 0.013 15.6 0.1 0.025 14.6 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) DUF592 PF04574.8 gi|385775933|ref|YP_005648501.1| - 0.062 12.8 0.3 0.079 12.5 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF592) zf-P11 PF03854.9 gi|385775933|ref|YP_005648501.1| - 0.11 12.0 0.1 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 P-11 zinc finger Rieske PF00355.21 gi|385775933|ref|YP_005648501.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain RPA_interact_C PF14768.1 gi|385775933|ref|YP_005648501.1| - 0.13 12.7 0.1 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Thymidylate_kin PF02223.12 gi|385775934|ref|YP_005648502.1| - 7.4e-44 149.3 0.1 8.5e-44 149.1 0.1 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_17 PF13207.1 gi|385775934|ref|YP_005648502.1| - 8.2e-09 36.3 0.3 4.1e-08 34.0 0.1 1.9 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|385775934|ref|YP_005648502.1| - 1.6e-07 31.6 1.7 4.3e-07 30.2 0.2 2.1 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|385775934|ref|YP_005648502.1| - 1.4e-06 28.3 0.0 1.8e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|385775934|ref|YP_005648502.1| - 1.8e-05 24.6 0.3 0.0014 18.4 0.0 2.2 2 0 0 2 2 2 1 Shikimate kinase dNK PF01712.14 gi|385775934|ref|YP_005648502.1| - 0.00021 21.2 1.5 0.00041 20.2 0.5 1.9 2 1 0 2 2 2 1 Deoxynucleoside kinase AAA_14 PF13173.1 gi|385775934|ref|YP_005648502.1| - 0.002 18.0 1.0 0.0028 17.5 0.1 1.9 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|385775934|ref|YP_005648502.1| - 0.009 15.1 0.2 0.069 12.2 0.0 2.0 2 0 0 2 2 2 1 KaiC KTI12 PF08433.5 gi|385775934|ref|YP_005648502.1| - 0.012 14.8 0.1 0.035 13.3 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|385775934|ref|YP_005648502.1| - 0.021 14.7 0.0 0.2 11.5 0.0 2.3 2 1 1 3 3 3 0 AAA domain KAP_NTPase PF07693.9 gi|385775934|ref|YP_005648502.1| - 0.022 13.7 0.0 0.022 13.7 0.0 1.2 1 1 0 1 1 1 0 KAP family P-loop domain cobW PF02492.14 gi|385775934|ref|YP_005648502.1| - 0.029 13.8 0.4 0.11 11.9 0.1 2.0 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|385775934|ref|YP_005648502.1| - 0.033 14.1 0.5 0.097 12.6 0.4 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|385775934|ref|YP_005648502.1| - 0.033 14.3 0.0 0.072 13.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.17 gi|385775934|ref|YP_005648502.1| - 0.034 13.5 0.2 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|385775934|ref|YP_005648502.1| - 0.036 13.7 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase RNA_helicase PF00910.17 gi|385775934|ref|YP_005648502.1| - 0.048 13.8 0.1 0.18 11.9 0.0 2.0 2 1 0 3 3 2 0 RNA helicase ABC_tran PF00005.22 gi|385775934|ref|YP_005648502.1| - 0.051 13.8 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|385775934|ref|YP_005648502.1| - 0.057 13.1 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|385775934|ref|YP_005648502.1| - 0.059 12.9 0.0 0.2 11.1 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ADK PF00406.17 gi|385775934|ref|YP_005648502.1| - 0.062 13.1 0.1 0.77 9.6 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase AAA_16 PF13191.1 gi|385775934|ref|YP_005648502.1| - 0.075 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|385775934|ref|YP_005648502.1| - 0.079 12.6 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|385775934|ref|YP_005648502.1| - 0.082 11.7 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|385775934|ref|YP_005648502.1| - 0.12 12.1 0.5 0.32 10.6 0.0 2.0 3 0 0 3 3 3 0 NTPase AAA_30 PF13604.1 gi|385775934|ref|YP_005648502.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|385775934|ref|YP_005648502.1| - 0.2 11.4 4.0 0.7 9.6 0.1 2.4 3 0 0 3 3 2 0 Domain of unknown function DUF87 CoaE PF01121.15 gi|385775935|ref|YP_005648503.1| - 0.061 12.7 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Dephospho-CoA kinase PduV-EutP PF10662.4 gi|385775935|ref|YP_005648503.1| - 0.081 12.4 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation GIT_SHD PF08518.6 gi|385775936|ref|YP_005648504.1| - 0.16 11.3 0.2 4.7 6.6 0.1 2.3 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT AAA_25 PF13481.1 gi|385775937|ref|YP_005648505.1| - 1.7e-08 34.1 0.0 3.7e-08 32.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385775937|ref|YP_005648505.1| - 4.1e-07 30.2 0.2 1.2e-06 28.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|385775937|ref|YP_005648505.1| - 1.2e-05 24.9 0.0 1.8e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|385775937|ref|YP_005648505.1| - 6.1e-05 22.2 1.1 0.09 11.8 0.1 2.1 1 1 1 2 2 2 2 KaiC AAA_16 PF13191.1 gi|385775937|ref|YP_005648505.1| - 0.00022 21.2 0.1 0.00027 20.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|385775937|ref|YP_005648505.1| - 0.0014 18.8 0.0 0.002 18.3 0.0 1.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|385775937|ref|YP_005648505.1| - 0.0074 16.5 0.2 0.0093 16.2 0.1 1.3 1 1 0 1 1 1 1 ABC transporter RNA_helicase PF00910.17 gi|385775937|ref|YP_005648505.1| - 0.0092 16.1 0.1 0.075 13.2 0.0 2.1 1 1 1 2 2 2 1 RNA helicase AAA_18 PF13238.1 gi|385775937|ref|YP_005648505.1| - 0.01 16.1 0.1 0.015 15.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|385775937|ref|YP_005648505.1| - 0.011 15.4 0.4 0.015 15.0 0.3 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|385775937|ref|YP_005648505.1| - 0.028 15.2 0.0 0.049 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|385775937|ref|YP_005648505.1| - 0.029 13.8 0.0 0.029 13.8 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|385775937|ref|YP_005648505.1| - 0.035 13.2 0.1 0.062 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad51 PF08423.6 gi|385775937|ref|YP_005648505.1| - 0.064 12.1 0.3 1.4 7.7 0.2 2.7 1 1 0 1 1 1 0 Rad51 NACHT PF05729.7 gi|385775937|ref|YP_005648505.1| - 0.086 12.4 0.0 0.18 11.4 0.0 1.5 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.12 gi|385775937|ref|YP_005648505.1| - 0.09 12.1 0.0 0.27 10.6 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Hpr_kinase_C PF07475.7 gi|385775937|ref|YP_005648505.1| - 0.11 11.8 0.1 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain DUF46 PF01864.12 gi|385775938|ref|YP_005648506.1| - 7.1e-41 139.9 9.4 3.3e-40 137.8 6.5 1.7 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|385775938|ref|YP_005648506.1| - 1.7e-05 24.6 6.9 1.7e-05 24.6 4.8 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family RhodobacterPufX PF11511.3 gi|385775939|ref|YP_005648507.1| - 0.11 11.8 0.3 0.11 11.8 0.2 2.3 3 0 0 3 3 3 0 Intrinsic membrane protein PufX DUF2116 PF09889.4 gi|385775939|ref|YP_005648507.1| - 0.25 11.1 0.1 0.25 11.1 0.1 3.0 2 1 1 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Fig1 PF12351.3 gi|385775939|ref|YP_005648507.1| - 0.35 10.7 9.8 0.16 11.8 2.3 2.0 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 ABC2_membrane_5 PF13346.1 gi|385775939|ref|YP_005648507.1| - 0.41 9.8 20.4 0.47 9.7 14.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|385775939|ref|YP_005648507.1| - 1.3 8.1 20.0 1.7 7.7 13.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein HlyIII PF03006.15 gi|385775939|ref|YP_005648507.1| - 1.4 8.2 8.8 2.3 7.5 6.1 1.3 1 1 0 1 1 1 0 Haemolysin-III related GPI2 PF06432.6 gi|385775939|ref|YP_005648507.1| - 2 7.6 5.3 2.3 7.4 3.3 1.3 1 1 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF3953 PF13129.1 gi|385775939|ref|YP_005648507.1| - 2.1 8.0 16.3 0.04 13.5 2.5 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3953) Tetraspannin PF00335.15 gi|385775939|ref|YP_005648507.1| - 3.6 6.8 19.4 6.7 5.9 13.4 1.4 1 1 0 1 1 1 0 Tetraspanin family E1-E2_ATPase PF00122.15 gi|385775939|ref|YP_005648507.1| - 5.8 5.8 11.1 1.3e+02 1.5 7.7 2.0 1 1 0 1 1 1 0 E1-E2 ATPase zf-LITAF-like PF10601.4 gi|385775939|ref|YP_005648507.1| - 9.7 6.1 6.8 22 5.0 0.1 2.7 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain Ala_racemase_C PF00842.16 gi|385775940|ref|YP_005648508.1| - 0.027 13.8 0.1 0.029 13.7 0.0 1.0 1 0 0 1 1 1 0 Alanine racemase, C-terminal domain DUF3990 PF13151.1 gi|385775940|ref|YP_005648508.1| - 0.13 11.6 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3990) MCM PF00493.18 gi|385775941|ref|YP_005648509.1| - 6.6e-135 449.1 0.2 1.2e-134 448.2 0.1 1.4 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|385775941|ref|YP_005648509.1| - 4.7e-23 81.9 5.0 4.9e-23 81.9 1.4 2.4 2 1 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|385775941|ref|YP_005648509.1| - 5.6e-08 32.6 0.0 1.4e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|385775941|ref|YP_005648509.1| - 3e-07 29.8 0.1 0.00011 21.4 0.0 2.5 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|385775941|ref|YP_005648509.1| - 2.8e-05 23.7 0.0 6e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|385775941|ref|YP_005648509.1| - 5.8e-05 22.6 0.1 0.00031 20.2 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Sld5 PF05916.6 gi|385775942|ref|YP_005648510.1| - 9e-12 45.2 1.3 1.3e-11 44.7 0.9 1.2 1 0 0 1 1 1 1 GINS complex protein THUMP PF02926.12 gi|385775943|ref|YP_005648511.1| - 9.4e-17 61.2 1.3 1.1e-16 61.0 0.9 1.1 1 0 0 1 1 1 1 THUMP domain Cdc6_C PF09079.6 gi|385775944|ref|YP_005648512.1| - 6.4e-23 80.2 0.3 2e-22 78.7 0.2 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|385775944|ref|YP_005648512.1| - 2.6e-14 53.4 0.2 1e-13 51.5 0.0 2.0 2 1 1 3 3 3 1 AAA domain Arch_ATPase PF01637.13 gi|385775944|ref|YP_005648512.1| - 2.9e-05 23.9 3.1 0.0014 18.3 0.2 3.0 2 1 1 3 3 3 1 Archaeal ATPase AAA_16 PF13191.1 gi|385775944|ref|YP_005648512.1| - 5.2e-05 23.3 0.2 0.00028 20.9 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|385775944|ref|YP_005648512.1| - 0.00019 21.6 0.0 0.00057 20.0 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|385775944|ref|YP_005648512.1| - 0.0025 16.7 0.0 0.0049 15.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.22 gi|385775944|ref|YP_005648512.1| - 0.0038 17.5 0.0 0.034 14.4 0.0 2.4 3 0 0 3 3 2 1 ABC transporter Miro PF08477.8 gi|385775944|ref|YP_005648512.1| - 0.0098 16.3 0.0 0.028 14.8 0.0 1.9 1 0 0 1 1 1 1 Miro-like protein AAA_17 PF13207.1 gi|385775944|ref|YP_005648512.1| - 0.014 16.2 3.7 0.031 15.0 1.1 2.6 2 2 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|385775944|ref|YP_005648512.1| - 0.039 13.3 0.0 4.4 6.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|385775944|ref|YP_005648512.1| - 0.047 13.1 0.0 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AIG1 PF04548.11 gi|385775944|ref|YP_005648512.1| - 0.064 12.3 0.0 0.17 10.9 0.0 1.7 1 0 0 1 1 1 0 AIG1 family AAA_5 PF07728.9 gi|385775944|ref|YP_005648512.1| - 0.11 12.2 0.3 3.9 7.2 0.0 3.1 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|385775944|ref|YP_005648512.1| - 0.12 12.1 0.2 0.32 10.7 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain DUF87 PF01935.12 gi|385775944|ref|YP_005648512.1| - 0.13 12.1 2.4 0.79 9.5 1.4 2.6 1 1 0 1 1 1 0 Domain of unknown function DUF87 TrmB PF01978.14 gi|385775945|ref|YP_005648513.1| - 7.2e-05 22.4 0.2 9.3e-05 22.0 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SieB PF14163.1 gi|385775945|ref|YP_005648513.1| - 0.02 14.4 0.3 0.021 14.3 0.2 1.1 1 0 0 1 1 1 0 Superinfection exclusion protein B L51_S25_CI-B8 PF05047.11 gi|385775945|ref|YP_005648513.1| - 0.096 12.4 0.1 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain HTH_45 PF14947.1 gi|385775945|ref|YP_005648513.1| - 0.1 12.4 2.0 0.096 12.5 0.4 1.6 1 1 0 2 2 2 0 Winged helix-turn-helix HTH_24 PF13412.1 gi|385775945|ref|YP_005648513.1| - 0.31 10.4 2.8 0.41 10.0 0.1 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MoaC PF01967.16 gi|385775946|ref|YP_005648514.1| - 5.9e-49 165.2 3.6 6.6e-49 165.0 2.5 1.0 1 0 0 1 1 1 1 MoaC family AAA PF00004.24 gi|385775947|ref|YP_005648515.1| - 2e-14 53.9 0.0 3.5e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|385775947|ref|YP_005648515.1| - 9.2e-10 37.8 0.0 2.2e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|385775947|ref|YP_005648515.1| - 1.6e-09 37.1 0.0 4.2e-09 35.8 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|385775947|ref|YP_005648515.1| - 2.7e-08 34.6 0.9 3.4e-07 31.0 0.6 3.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|385775947|ref|YP_005648515.1| - 8.4e-08 32.0 0.0 1.7e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|385775947|ref|YP_005648515.1| - 1.7e-07 31.1 0.0 4e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385775947|ref|YP_005648515.1| - 2.5e-07 30.8 0.0 8.7e-06 25.9 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385775947|ref|YP_005648515.1| - 5.8e-07 29.6 0.0 9.8e-07 28.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.8 gi|385775947|ref|YP_005648515.1| - 3.6e-06 26.1 0.0 7.7e-06 25.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|385775947|ref|YP_005648515.1| - 9.2e-06 25.1 0.1 3.1e-05 23.4 0.0 1.9 2 1 0 2 2 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|385775947|ref|YP_005648515.1| - 1.4e-05 24.0 0.0 0.034 12.8 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus AAA_18 PF13238.1 gi|385775947|ref|YP_005648515.1| - 4.4e-05 23.7 0.1 0.00019 21.7 0.0 2.3 2 0 0 2 2 1 1 AAA domain NACHT PF05729.7 gi|385775947|ref|YP_005648515.1| - 0.00014 21.5 0.0 0.014 15.0 0.0 3.0 1 1 2 3 3 3 1 NACHT domain NB-ARC PF00931.17 gi|385775947|ref|YP_005648515.1| - 0.00021 20.2 0.0 0.00053 18.9 0.0 1.6 1 0 0 1 1 1 1 NB-ARC domain RNA_helicase PF00910.17 gi|385775947|ref|YP_005648515.1| - 0.0003 20.9 0.0 0.00083 19.4 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.1 gi|385775947|ref|YP_005648515.1| - 0.00034 20.5 0.0 0.00057 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|385775947|ref|YP_005648515.1| - 0.00056 19.8 0.0 0.0015 18.4 0.0 1.6 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|385775947|ref|YP_005648515.1| - 0.0011 18.6 0.0 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|385775947|ref|YP_005648515.1| - 0.0017 18.3 0.0 0.0049 16.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|385775947|ref|YP_005648515.1| - 0.0041 16.2 0.0 0.0076 15.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.16 gi|385775947|ref|YP_005648515.1| - 0.0043 16.2 0.0 0.0064 15.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.8 gi|385775947|ref|YP_005648515.1| - 0.0047 16.4 0.6 0.017 14.6 0.0 2.2 3 0 0 3 3 3 1 DNA polymerase III, delta subunit DUF258 PF03193.11 gi|385775947|ref|YP_005648515.1| - 0.0048 16.1 0.0 0.009 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|385775947|ref|YP_005648515.1| - 0.0074 16.5 0.0 0.036 14.3 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_23 PF13476.1 gi|385775947|ref|YP_005648515.1| - 0.0078 16.5 0.3 0.43 10.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385775947|ref|YP_005648515.1| - 0.016 14.5 0.0 0.035 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|385775947|ref|YP_005648515.1| - 0.018 13.8 0.0 0.039 12.7 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA_29 PF13555.1 gi|385775947|ref|YP_005648515.1| - 0.019 14.5 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|385775947|ref|YP_005648515.1| - 0.019 15.0 0.0 0.046 13.7 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|385775947|ref|YP_005648515.1| - 0.024 14.3 0.0 0.23 11.1 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.1 gi|385775947|ref|YP_005648515.1| - 0.024 14.2 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|385775947|ref|YP_005648515.1| - 0.026 14.4 0.0 0.069 13.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|385775947|ref|YP_005648515.1| - 0.027 14.1 0.0 0.11 12.1 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase Sigma54_activat PF00158.21 gi|385775947|ref|YP_005648515.1| - 0.028 13.9 0.0 0.08 12.4 0.0 1.7 1 1 1 2 2 2 0 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|385775947|ref|YP_005648515.1| - 0.041 12.7 0.1 0.18 10.6 0.0 1.9 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|385775947|ref|YP_005648515.1| - 0.066 12.8 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|385775947|ref|YP_005648515.1| - 0.1 11.7 0.0 0.23 10.5 0.0 1.5 1 1 0 1 1 1 0 KaiC SKI PF01202.17 gi|385775947|ref|YP_005648515.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Shikimate kinase Rep_fac_C PF08542.6 gi|385775948|ref|YP_005648516.1| - 3.3e-24 84.6 1.9 5.6e-24 83.9 0.3 2.2 3 0 0 3 3 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|385775948|ref|YP_005648516.1| - 3.5e-15 56.3 0.0 1.2e-14 54.6 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|385775948|ref|YP_005648516.1| - 3.6e-14 52.7 0.0 1.4e-11 44.3 0.0 2.5 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|385775948|ref|YP_005648516.1| - 9.9e-08 31.1 0.0 0.00019 20.2 0.0 2.2 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|385775948|ref|YP_005648516.1| - 1.4e-07 30.8 0.0 3.9e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|385775948|ref|YP_005648516.1| - 4.3e-07 29.8 0.1 2.6e-06 27.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|385775948|ref|YP_005648516.1| - 2.8e-06 27.4 0.4 0.0041 17.2 0.1 3.0 2 1 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|385775948|ref|YP_005648516.1| - 5.1e-06 26.1 0.8 0.0014 18.1 0.1 2.4 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|385775948|ref|YP_005648516.1| - 1.2e-05 25.3 0.0 0.0014 18.6 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_3 PF07726.6 gi|385775948|ref|YP_005648516.1| - 1.2e-05 24.8 0.0 2.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|385775948|ref|YP_005648516.1| - 2.6e-05 23.1 0.0 0.00045 19.0 0.0 2.3 1 1 0 1 1 1 1 TIP49 C-terminus AAA_18 PF13238.1 gi|385775948|ref|YP_005648516.1| - 6.7e-05 23.2 0.0 0.00028 21.1 0.0 2.1 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|385775948|ref|YP_005648516.1| - 0.00013 21.4 0.0 0.00032 20.1 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|385775948|ref|YP_005648516.1| - 0.00014 21.5 0.0 0.00031 20.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain SNF2_N PF00176.18 gi|385775948|ref|YP_005648516.1| - 0.00018 20.4 0.0 0.45 9.2 0.0 2.1 1 1 1 2 2 2 2 SNF2 family N-terminal domain Sigma54_activ_2 PF14532.1 gi|385775948|ref|YP_005648516.1| - 0.00028 20.9 0.0 0.0014 18.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|385775948|ref|YP_005648516.1| - 0.00042 20.1 0.1 0.00086 19.0 0.1 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_5 PF07728.9 gi|385775948|ref|YP_005648516.1| - 0.0005 19.7 0.1 0.0049 16.5 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) ResIII PF04851.10 gi|385775948|ref|YP_005648516.1| - 0.0006 19.7 0.0 0.0033 17.2 0.0 2.1 2 1 0 3 3 2 1 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|385775948|ref|YP_005648516.1| - 0.00072 19.1 0.0 0.0011 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|385775948|ref|YP_005648516.1| - 0.00084 18.8 0.0 0.0022 17.5 0.0 1.7 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|385775948|ref|YP_005648516.1| - 0.0011 18.4 0.3 0.0054 16.1 0.1 2.2 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|385775948|ref|YP_005648516.1| - 0.002 17.3 0.0 0.11 11.6 0.0 2.5 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|385775948|ref|YP_005648516.1| - 0.0025 17.0 0.0 0.24 10.6 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein T2SE PF00437.15 gi|385775948|ref|YP_005648516.1| - 0.0041 16.0 0.0 0.0096 14.8 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|385775948|ref|YP_005648516.1| - 0.007 17.1 0.9 0.013 16.2 0.1 2.0 2 1 0 2 2 1 1 AAA domain DUF2075 PF09848.4 gi|385775948|ref|YP_005648516.1| - 0.0074 15.2 0.1 0.053 12.4 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|385775948|ref|YP_005648516.1| - 0.0088 15.5 0.2 0.59 9.5 0.0 2.7 1 1 1 3 3 3 1 AAA-like domain DUF815 PF05673.8 gi|385775948|ref|YP_005648516.1| - 0.0094 14.8 0.0 0.02 13.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|385775948|ref|YP_005648516.1| - 0.019 14.1 0.0 0.049 12.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|385775948|ref|YP_005648516.1| - 0.022 14.6 0.2 0.056 13.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain SseB_C PF14581.1 gi|385775948|ref|YP_005648516.1| - 0.022 14.5 0.0 0.08 12.8 0.0 1.9 1 0 0 1 1 1 0 SseB protein C-terminal domain DEAD PF00270.24 gi|385775948|ref|YP_005648516.1| - 0.023 14.1 0.8 5.6 6.4 0.0 2.9 2 2 2 4 4 4 0 DEAD/DEAH box helicase DUF1548 PF07579.6 gi|385775948|ref|YP_005648516.1| - 0.025 14.7 0.6 0.22 11.6 0.0 2.2 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1548) AAA_28 PF13521.1 gi|385775948|ref|YP_005648516.1| - 0.038 13.9 0.0 0.088 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|385775948|ref|YP_005648516.1| - 0.051 13.0 0.0 1.3 8.5 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Sec16_C PF12931.2 gi|385775948|ref|YP_005648516.1| - 0.051 13.3 0.1 0.1 12.3 0.0 1.5 2 0 0 2 2 1 0 Sec23-binding domain of Sec16 KTI12 PF08433.5 gi|385775948|ref|YP_005648516.1| - 0.059 12.5 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|385775948|ref|YP_005648516.1| - 0.08 12.5 0.0 0.47 9.9 0.0 2.2 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|385775948|ref|YP_005648516.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PBP PF01161.15 gi|385775949|ref|YP_005648517.1| - 9.2e-37 126.1 0.1 1e-36 125.9 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Proteasome PF00227.21 gi|385775950|ref|YP_005648518.1| - 1.1e-49 168.2 0.6 1.3e-49 168.0 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit Amidase PF01425.16 gi|385775951|ref|YP_005648519.1| - 9e-87 291.7 0.0 1.3e-86 291.2 0.0 1.2 1 0 0 1 1 1 1 Amidase DASH_Ask1 PF08655.5 gi|385775951|ref|YP_005648519.1| - 0.073 12.9 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 DASH complex subunit Ask1 ADH_N PF08240.7 gi|385775952|ref|YP_005648520.1| - 6.1e-27 93.5 0.1 1.2e-26 92.5 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385775952|ref|YP_005648520.1| - 3.1e-23 81.7 0.3 5.2e-23 81.0 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385775952|ref|YP_005648520.1| - 4.4e-13 50.2 0.1 9.2e-13 49.1 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|385775952|ref|YP_005648520.1| - 6.3e-05 23.0 0.7 0.00013 22.0 0.5 1.5 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|385775952|ref|YP_005648520.1| - 0.0001 22.0 0.7 0.00026 20.6 0.5 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CMAS PF02353.15 gi|385775952|ref|YP_005648520.1| - 0.00034 19.7 0.0 0.0005 19.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase ELFV_dehydrog PF00208.16 gi|385775952|ref|YP_005648520.1| - 0.0025 17.4 0.2 0.0041 16.7 0.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AlaDh_PNT_C PF01262.16 gi|385775952|ref|YP_005648520.1| - 0.0032 17.0 0.4 0.0062 16.1 0.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain SIS_2 PF13580.1 gi|385775952|ref|YP_005648520.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 SIS domain 2-Hacid_dh_C PF02826.14 gi|385775952|ref|YP_005648520.1| - 0.029 13.5 0.3 0.048 12.8 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|385775952|ref|YP_005648520.1| - 0.032 14.3 0.0 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain THF_DHG_CYH_C PF02882.14 gi|385775952|ref|YP_005648520.1| - 0.039 13.0 1.0 0.066 12.2 0.7 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PALP PF00291.20 gi|385775952|ref|YP_005648520.1| - 0.056 12.6 0.6 0.18 11.0 0.2 1.8 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme E1-N PF14463.1 gi|385775952|ref|YP_005648520.1| - 0.06 12.9 0.1 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 E1 N-terminal domain ADH_N_assoc PF13823.1 gi|385775952|ref|YP_005648520.1| - 0.21 11.3 3.9 5.1 6.8 2.7 2.8 1 1 0 1 1 1 0 Alcohol dehydrogenase GroES-associated adh_short PF00106.20 gi|385775952|ref|YP_005648520.1| - 0.31 10.9 1.8 0.55 10.1 1.1 1.4 1 1 0 1 1 1 0 short chain dehydrogenase Microtub_assoc PF07989.6 gi|385775954|ref|YP_005648522.1| - 0.0022 17.7 2.3 0.019 14.7 0.0 2.2 2 0 0 2 2 2 2 Microtubule associated DUF3791 PF12668.2 gi|385775955|ref|YP_005648523.1| - 0.076 12.6 0.1 4.7 6.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3791) PDDEXK_1 PF12705.2 gi|385775958|ref|YP_005648526.1| - 3.6e-10 39.6 0.3 2.6e-08 33.5 0.1 2.2 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|385775958|ref|YP_005648526.1| - 4e-10 39.8 0.1 5.2e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.1 gi|385775958|ref|YP_005648526.1| - 0.034 14.2 0.1 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Exo5 PF09810.4 gi|385775958|ref|YP_005648526.1| - 7.6 5.6 8.7 8 5.5 2.5 2.6 1 1 1 3 3 3 0 Exonuclease V - a 5' deoxyribonuclease Virulence_RhuM PF13310.1 gi|385775959|ref|YP_005648527.1| - 0.025 13.6 0.4 0.045 12.7 0.3 1.4 1 0 0 1 1 1 0 Virulence protein RhuM family DUF3529 PF12046.3 gi|385775959|ref|YP_005648527.1| - 0.11 11.5 0.3 0.2 10.6 0.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3529) Phage_integrase PF00589.17 gi|385775960|ref|YP_005648528.1| - 4.8e-13 49.1 0.1 9.4e-12 44.9 0.0 2.5 2 1 0 2 2 2 1 Phage integrase family HTH_3 PF01381.17 gi|385775960|ref|YP_005648528.1| - 2.4e-06 27.3 0.1 1.5e-05 24.7 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix Phage_int_SAM_4 PF13495.1 gi|385775960|ref|YP_005648528.1| - 4.3e-05 23.7 2.1 0.00028 21.1 0.0 3.3 4 1 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain HTH_19 PF12844.2 gi|385775960|ref|YP_005648528.1| - 0.00097 19.1 0.7 0.043 13.8 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|385775960|ref|YP_005648528.1| - 0.0052 16.9 0.0 0.021 15.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|385775960|ref|YP_005648528.1| - 0.05 13.6 0.0 0.14 12.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|385775960|ref|YP_005648528.1| - 0.059 13.5 0.1 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain TcdB_N PF12918.2 gi|385775960|ref|YP_005648528.1| - 0.74 9.9 7.5 3.9 7.6 0.0 4.1 4 0 0 4 4 4 0 TcdB toxin N-terminal helical domain Beta-Casp PF10996.3 gi|385775961|ref|YP_005648529.1| - 1.7e-34 118.4 0.0 5.9e-34 116.7 0.0 2.0 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|385775961|ref|YP_005648529.1| - 4.1e-25 88.5 0.3 7.3e-25 87.7 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|385775961|ref|YP_005648529.1| - 1.4e-13 50.4 0.9 1e-12 47.6 0.0 2.8 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|385775961|ref|YP_005648529.1| - 2e-12 47.0 0.0 4.9e-12 45.8 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|385775961|ref|YP_005648529.1| - 0.00044 19.9 0.0 0.0021 17.8 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|385775961|ref|YP_005648529.1| - 0.00046 19.6 0.6 0.00046 19.6 0.4 3.3 2 1 1 3 3 3 1 KH domain KH_1 PF00013.24 gi|385775961|ref|YP_005648529.1| - 0.01 15.4 6.0 0.033 13.8 0.0 2.6 2 0 0 2 2 2 0 KH domain Fe-ADH_2 PF13685.1 gi|385775962|ref|YP_005648530.1| - 1.2e-60 204.9 0.1 1.4e-60 204.6 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|385775962|ref|YP_005648530.1| - 1.1e-22 80.1 0.1 4.1e-22 78.3 0.1 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|385775962|ref|YP_005648530.1| - 5.8e-09 35.2 0.2 1.3e-07 30.8 0.1 2.5 1 1 0 1 1 1 1 3-dehydroquinate synthase FKBP_C PF00254.23 gi|385775963|ref|YP_005648531.1| - 1.6e-14 53.6 0.0 3.8e-14 52.4 0.0 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase LSM PF01423.17 gi|385775964|ref|YP_005648532.1| - 4.5e-23 80.5 0.6 5.1e-23 80.4 0.4 1.0 1 0 0 1 1 1 1 LSM domain HNH_4 PF13395.1 gi|385775964|ref|YP_005648532.1| - 0.067 12.8 0.6 3 7.5 0.1 2.2 1 1 1 2 2 2 0 HNH endonuclease Ribosomal_L37e PF01907.14 gi|385775965|ref|YP_005648533.1| - 8.8e-27 92.6 11.1 9.6e-27 92.5 7.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e Stc1 PF12898.2 gi|385775965|ref|YP_005648533.1| - 0.0019 18.2 0.6 0.0021 18.0 0.4 1.1 1 0 0 1 1 1 1 Stc1 domain DZR PF12773.2 gi|385775965|ref|YP_005648533.1| - 0.0049 16.6 1.0 0.0058 16.4 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|385775965|ref|YP_005648533.1| - 0.013 15.3 2.1 0.015 15.1 1.4 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like GCC2_GCC3 PF07699.8 gi|385775965|ref|YP_005648533.1| - 0.015 14.8 1.5 0.021 14.3 1.1 1.3 1 0 0 1 1 1 0 GCC2 and GCC3 zf-ribbon_3 PF13248.1 gi|385775965|ref|YP_005648533.1| - 0.017 14.3 2.6 0.025 13.7 1.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Cript PF10235.4 gi|385775965|ref|YP_005648533.1| - 0.066 13.5 2.1 0.086 13.2 1.4 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT HypA PF01155.14 gi|385775965|ref|YP_005648533.1| - 0.069 12.8 0.5 0.074 12.7 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family ASFV_p27 PF06556.6 gi|385775965|ref|YP_005648533.1| - 0.1 12.4 0.4 0.12 12.3 0.2 1.1 1 0 0 1 1 1 0 IAP-like protein p27 C-terminus OrfB_Zn_ribbon PF07282.6 gi|385775965|ref|YP_005648533.1| - 0.27 10.9 3.9 0.32 10.6 2.5 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF2688 PF10892.3 gi|385775965|ref|YP_005648533.1| - 0.31 10.7 3.2 0.49 10.1 2.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) DNA_RNApol_7kD PF03604.8 gi|385775965|ref|YP_005648533.1| - 1 8.9 6.7 0.42 10.1 0.7 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L32p PF01783.18 gi|385775965|ref|YP_005648533.1| - 1.1 9.4 9.5 1.2 9.3 5.1 2.0 1 1 1 2 2 2 0 Ribosomal L32p protein family DUF1660 PF07874.6 gi|385775965|ref|YP_005648533.1| - 3.3 8.0 5.0 13 6.1 3.5 1.8 1 1 0 1 1 1 0 Prophage protein (DUF1660) Spermine_synth PF01564.12 gi|385775966|ref|YP_005648534.1| - 4.2e-63 212.5 0.0 5.5e-63 212.1 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|385775966|ref|YP_005648534.1| - 1.2e-05 25.8 0.0 1.8e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385775966|ref|YP_005648534.1| - 3.9e-05 24.0 0.0 6.6e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385775966|ref|YP_005648534.1| - 0.00013 21.3 0.0 0.0002 20.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|385775966|ref|YP_005648534.1| - 0.00061 19.3 0.0 0.001 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|385775966|ref|YP_005648534.1| - 0.0008 19.0 0.0 0.0018 17.9 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase AAA_31 PF13614.1 gi|385775966|ref|YP_005648534.1| - 0.013 15.4 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Methyltransf_25 PF13649.1 gi|385775966|ref|YP_005648534.1| - 0.02 15.2 0.0 0.044 14.1 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385775966|ref|YP_005648534.1| - 0.022 14.7 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.11 gi|385775966|ref|YP_005648534.1| - 0.026 13.5 0.2 0.057 12.3 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF43 MCR_D PF02505.9 gi|385775966|ref|YP_005648534.1| - 0.036 13.6 0.4 0.07 12.7 0.3 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein D Methyltransf_5 PF01795.14 gi|385775966|ref|YP_005648534.1| - 0.14 11.3 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family AdoHcyase PF05221.12 gi|385775967|ref|YP_005648535.1| - 6e-74 248.3 0.5 6.8e-74 248.1 0.3 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|385775967|ref|YP_005648535.1| - 1.7e-62 210.0 1.0 3e-62 209.2 0.7 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|385775967|ref|YP_005648535.1| - 1.7e-07 30.7 0.2 3.2e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|385775967|ref|YP_005648535.1| - 2.3e-07 30.1 0.3 5.1e-07 29.0 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|385775967|ref|YP_005648535.1| - 0.0043 17.0 0.1 0.009 16.0 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain P_gingi_FimA PF06321.6 gi|385775967|ref|YP_005648535.1| - 0.0062 15.7 0.2 0.022 13.9 0.0 1.9 2 0 0 2 2 2 1 Major fimbrial subunit protein (FimA) DUF2120 PF09893.4 gi|385775967|ref|YP_005648535.1| - 0.048 13.6 0.7 0.16 11.8 0.0 2.2 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2120) FlhE PF06366.8 gi|385775967|ref|YP_005648535.1| - 0.058 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Flagellar protein FlhE DUF3568 PF12092.3 gi|385775970|ref|YP_005648538.1| - 0.081 12.6 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) Ribosomal_L21e PF01157.13 gi|385775971|ref|YP_005648539.1| - 3.3e-26 90.9 0.9 3.9e-26 90.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Prosystemin PF07376.6 gi|385775971|ref|YP_005648539.1| - 0.032 13.6 0.1 0.068 12.5 0.0 1.5 1 1 1 2 2 2 0 Prosystemin DUF104 PF01954.11 gi|385775971|ref|YP_005648539.1| - 0.21 11.6 0.9 0.82 9.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF104 RNA_pol_Rpb4 PF03874.11 gi|385775972|ref|YP_005648540.1| - 1.5e-13 50.7 0.5 1.7e-13 50.5 0.4 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DDE_3 PF13358.1 gi|385775972|ref|YP_005648540.1| - 0.0034 17.1 0.0 0.0037 17.0 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease UTRA PF07702.8 gi|385775972|ref|YP_005648540.1| - 0.0074 15.8 0.1 0.01 15.4 0.0 1.3 1 1 0 1 1 1 1 UTRA domain DUF655 PF04919.7 gi|385775973|ref|YP_005648541.1| - 1.2e-66 223.8 3.1 1.4e-66 223.6 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|385775973|ref|YP_005648541.1| - 0.001 19.0 0.1 0.0028 17.6 0.0 1.7 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|385775973|ref|YP_005648541.1| - 0.04 13.8 0.3 0.081 12.8 0.1 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif RrnaAD PF00398.15 gi|385775974|ref|YP_005648542.1| - 4.1e-15 55.5 0.0 9.1e-15 54.3 0.0 1.5 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|385775974|ref|YP_005648542.1| - 0.086 12.4 0.1 0.24 10.9 0.1 1.7 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385775974|ref|YP_005648542.1| - 0.15 12.5 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|385775975|ref|YP_005648543.1| - 3.4e-12 46.0 0.0 1.3e-11 44.2 0.0 1.7 1 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|385775975|ref|YP_005648543.1| - 4.5e-09 36.3 0.0 5.9e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385775975|ref|YP_005648543.1| - 3.4e-07 29.6 0.0 4.8e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|385775975|ref|YP_005648543.1| - 0.0027 17.2 0.0 0.0046 16.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|385775975|ref|YP_005648543.1| - 0.0034 16.9 0.0 0.0049 16.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.10 gi|385775975|ref|YP_005648543.1| - 0.0039 16.6 0.0 0.0058 16.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|385775975|ref|YP_005648543.1| - 0.017 15.7 0.0 0.023 15.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|385775975|ref|YP_005648543.1| - 0.026 13.9 0.1 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase RepA_N PF06970.6 gi|385775975|ref|YP_005648543.1| - 0.041 13.6 0.2 0.073 12.8 0.1 1.4 1 0 0 1 1 1 0 Replication initiator protein A (RepA) N-terminus Methyltransf_23 PF13489.1 gi|385775975|ref|YP_005648543.1| - 0.064 12.9 0.0 0.076 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain SpoU_methylase PF00588.14 gi|385775976|ref|YP_005648544.1| - 3.4e-33 114.5 0.0 5.5e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|385775976|ref|YP_005648544.1| - 5.9e-05 22.6 0.0 0.0026 17.2 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Ribosomal_S3Ae PF01015.13 gi|385775977|ref|YP_005648545.1| - 1.2e-74 249.8 2.8 1.3e-74 249.7 2.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family P63C PF10546.4 gi|385775977|ref|YP_005648545.1| - 0.031 14.2 0.1 0.14 12.0 0.0 2.1 2 1 0 2 2 2 0 P63C domain Transglut_i_TM PF14400.1 gi|385775977|ref|YP_005648545.1| - 0.12 11.8 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices NTP_transferase PF00483.18 gi|385775978|ref|YP_005648546.1| - 1.3e-36 126.1 0.0 1.8e-36 125.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|385775978|ref|YP_005648546.1| - 8.4e-21 72.5 22.2 6.8e-08 31.6 0.2 4.9 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|385775978|ref|YP_005648546.1| - 2e-15 57.2 0.0 2.7e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|385775978|ref|YP_005648546.1| - 3.1e-07 29.8 7.1 0.002 17.6 0.1 3.9 2 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|385775978|ref|YP_005648546.1| - 6.6e-07 29.0 0.1 3.9e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_4 PF13562.1 gi|385775978|ref|YP_005648546.1| - 0.12 12.0 0.1 7.9 6.0 0.0 3.1 2 1 0 2 2 2 0 Sugar nucleotidyl transferase MMR_HSR1_C PF08438.5 gi|385775979|ref|YP_005648547.1| - 3.3e-37 127.0 0.1 5.7e-37 126.2 0.1 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|385775979|ref|YP_005648547.1| - 6e-19 68.1 0.0 5.3e-18 65.0 0.0 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|385775979|ref|YP_005648547.1| - 2.5e-16 59.2 0.0 5.2e-16 58.2 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|385775979|ref|YP_005648547.1| - 1e-06 28.1 1.6 0.00021 20.6 0.1 2.8 3 0 0 3 3 3 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|385775979|ref|YP_005648547.1| - 0.0019 17.6 1.4 1.6 8.0 0.0 3.0 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.8 gi|385775979|ref|YP_005648547.1| - 0.024 14.4 0.1 0.9 9.3 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) Sec3_C PF09763.4 gi|385775979|ref|YP_005648547.1| - 0.05 11.7 0.9 0.066 11.3 0.6 1.1 1 0 0 1 1 1 0 Exocyst complex component Sec3 Miro PF08477.8 gi|385775979|ref|YP_005648547.1| - 0.092 13.2 0.1 0.74 10.3 0.0 2.5 2 1 0 2 2 2 0 Miro-like protein Ribosomal_L15e PF00827.12 gi|385775980|ref|YP_005648548.1| - 1.5e-76 256.2 8.1 1.9e-76 255.8 5.6 1.1 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|385775981|ref|YP_005648549.1| - 7.8e-28 96.8 0.6 1.1e-27 96.4 0.4 1.2 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|385775982|ref|YP_005648550.1| - 5.2e-20 71.1 0.3 2.5e-19 68.9 0.2 1.8 1 1 0 1 1 1 1 RNase P subunit p30 RNase_P_Rpp14 PF01900.14 gi|385775983|ref|YP_005648551.1| - 5.5e-18 64.8 0.0 8.3e-18 64.2 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family TCR_zetazeta PF11628.3 gi|385775983|ref|YP_005648551.1| - 0.0013 18.1 3.9 0.0024 17.2 2.7 1.4 1 0 0 1 1 1 1 T-cell surface glycoprotein CD3 zeta chain Proteasome PF00227.21 gi|385775984|ref|YP_005648552.1| - 5.4e-63 211.7 0.1 7.5e-63 211.2 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|385775984|ref|YP_005648552.1| - 5.6e-13 47.9 1.1 1.1e-12 46.9 0.3 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|385775985|ref|YP_005648553.1| - 9.6e-29 99.0 0.1 1.9e-28 98.0 0.1 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|385775985|ref|YP_005648553.1| - 8e-22 77.2 1.4 1.1e-21 76.7 1.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|385775985|ref|YP_005648553.1| - 0.017 15.0 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 Elongation factor G C-terminus UPF0262 PF06793.7 gi|385775985|ref|YP_005648553.1| - 0.032 13.9 0.2 0.048 13.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0262) DUF1949 PF09186.6 gi|385775985|ref|YP_005648553.1| - 0.098 12.2 1.1 0.48 10.0 0.0 2.6 4 0 0 4 4 4 0 Domain of unknown function (DUF1949) KH_1 PF00013.24 gi|385775986|ref|YP_005648554.1| - 3.5e-05 23.3 0.2 0.0002 20.9 0.1 2.3 1 1 1 2 2 2 1 KH domain S1 PF00575.18 gi|385775986|ref|YP_005648554.1| - 6.8e-05 22.8 0.5 0.00012 22.0 0.1 1.7 2 0 0 2 2 2 1 S1 RNA binding domain LicD PF04991.8 gi|385775986|ref|YP_005648554.1| - 0.005 16.9 0.1 0.0091 16.1 0.0 1.4 2 0 0 2 2 2 1 LicD family NotI PF12183.3 gi|385775986|ref|YP_005648554.1| - 0.03 13.3 0.0 0.051 12.6 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease NotI RNase_PH PF01138.16 gi|385775987|ref|YP_005648555.1| - 1.4e-34 119.2 0.0 1.8e-34 118.8 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|385775987|ref|YP_005648555.1| - 1.6e-14 53.5 0.0 3e-14 52.6 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 DUF4192 PF13830.1 gi|385775987|ref|YP_005648555.1| - 0.012 15.2 0.3 0.017 14.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4192) RNase_PH PF01138.16 gi|385775988|ref|YP_005648556.1| - 2.1e-28 99.2 0.0 3.1e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|385775988|ref|YP_005648556.1| - 7.6e-11 41.7 0.1 2.2e-10 40.3 0.0 1.8 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.14 gi|385775989|ref|YP_005648557.1| - 7.8e-25 86.5 6.6 8.3e-25 86.4 4.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|385775989|ref|YP_005648557.1| - 0.00026 20.7 4.5 0.00033 20.3 3.1 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385775989|ref|YP_005648557.1| - 0.0044 16.6 0.8 0.0053 16.3 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rep_fac-A_C PF08646.5 gi|385775989|ref|YP_005648557.1| - 0.0096 15.6 2.0 0.012 15.3 1.4 1.2 1 0 0 1 1 1 1 Replication factor-A C terminal domain zf-C3HC4_2 PF13923.1 gi|385775989|ref|YP_005648557.1| - 0.014 15.4 1.1 4.2 7.4 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Endonuclease_7 PF02945.10 gi|385775989|ref|YP_005648557.1| - 0.037 13.7 3.0 0.061 13.0 0.1 2.0 1 1 1 2 2 2 0 Recombination endonuclease VII HMG_CoA_synt_C PF08540.5 gi|385775989|ref|YP_005648557.1| - 0.055 12.9 0.0 0.057 12.8 0.0 1.0 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase C terminal zf-TFIIB PF13453.1 gi|385775989|ref|YP_005648557.1| - 0.07 12.3 0.4 0.12 11.5 0.3 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger DnaJ_CXXCXGXG PF00684.14 gi|385775989|ref|YP_005648557.1| - 0.11 12.6 2.0 0.17 11.9 1.4 1.4 1 1 0 1 1 1 0 DnaJ central domain CpXC PF14353.1 gi|385775989|ref|YP_005648557.1| - 0.12 12.3 1.5 0.35 10.8 1.2 1.6 1 1 1 2 2 2 0 CpXC protein DUF4379 PF14311.1 gi|385775989|ref|YP_005648557.1| - 0.14 11.9 8.2 0.53 10.1 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) A2L_zn_ribbon PF08792.5 gi|385775989|ref|YP_005648557.1| - 0.2 11.1 3.5 0.34 10.4 2.5 1.4 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RING_2 PF13639.1 gi|385775989|ref|YP_005648557.1| - 0.26 11.1 1.8 7.2 6.5 1.8 2.0 1 1 1 2 2 2 0 Ring finger domain zf-H2C2_2 PF13465.1 gi|385775989|ref|YP_005648557.1| - 0.36 11.1 4.3 1.1 9.6 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|385775989|ref|YP_005648557.1| - 0.57 10.6 2.9 17 6.0 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.1 gi|385775989|ref|YP_005648557.1| - 0.9 8.8 3.4 1.1 8.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|385775989|ref|YP_005648557.1| - 1.1 8.9 3.8 2.3 7.9 0.3 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Prim_Zn_Ribbon PF08273.7 gi|385775989|ref|YP_005648557.1| - 2 8.5 4.4 6.7 6.8 3.0 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase TFIIS_C PF01096.13 gi|385775989|ref|YP_005648557.1| - 7.5 6.2 7.7 22 4.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PHD PF00628.24 gi|385775989|ref|YP_005648557.1| - 9.6 5.9 7.4 12 5.7 2.4 2.0 1 1 1 2 2 2 0 PHD-finger Brix PF04427.13 gi|385775990|ref|YP_005648558.1| - 1.2e-12 47.9 0.3 1.5e-12 47.6 0.2 1.2 1 0 0 1 1 1 1 Brix domain Pcc1 PF09341.5 gi|385775991|ref|YP_005648559.1| - 0.021 14.8 0.0 0.038 14.0 0.0 1.4 1 1 0 1 1 1 0 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|385775992|ref|YP_005648560.1| - 4e-26 90.8 16.1 4.5e-26 90.6 11.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit TelA PF05816.6 gi|385775992|ref|YP_005648560.1| - 0.0066 15.1 9.3 0.008 14.9 6.5 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) Cortex-I_coil PF09304.5 gi|385775992|ref|YP_005648560.1| - 0.0077 16.2 12.0 0.0079 16.2 2.6 2.1 2 0 0 2 2 2 1 Cortexillin I, coiled coil MerR-DNA-bind PF09278.6 gi|385775992|ref|YP_005648560.1| - 0.013 15.8 10.6 0.067 13.5 1.4 2.8 3 0 0 3 3 3 0 MerR, DNA binding UBN2 PF14223.1 gi|385775992|ref|YP_005648560.1| - 0.014 15.1 7.2 0.06 13.1 1.2 2.1 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type WXG100 PF06013.7 gi|385775992|ref|YP_005648560.1| - 0.027 14.4 1.8 2.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Proteins of 100 residues with WXG Baculo_PEP_C PF04513.7 gi|385775992|ref|YP_005648560.1| - 0.028 14.2 7.2 0.14 12.0 2.2 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Stimulus_sens_1 PF13756.1 gi|385775992|ref|YP_005648560.1| - 0.031 14.6 0.1 0.39 11.1 0.0 2.4 1 1 1 2 2 2 0 Stimulus-sensing domain TrbM PF07424.6 gi|385775992|ref|YP_005648560.1| - 0.043 13.7 0.8 0.067 13.1 0.6 1.3 1 1 0 1 1 1 0 TrbM Flag1_repress PF03614.8 gi|385775992|ref|YP_005648560.1| - 0.045 13.3 0.4 0.055 13.0 0.3 1.1 1 0 0 1 1 1 0 Repressor of phase-1 flagellin DUF3993 PF13158.1 gi|385775992|ref|YP_005648560.1| - 0.061 13.1 0.1 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3993) NPV_P10 PF05531.7 gi|385775992|ref|YP_005648560.1| - 0.075 13.2 7.3 0.077 13.2 1.2 2.4 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF424 PF04242.8 gi|385775992|ref|YP_005648560.1| - 0.11 12.5 1.3 0.39 10.8 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF424) SAS4 PF15460.1 gi|385775992|ref|YP_005648560.1| - 0.11 12.3 5.0 1.3 8.8 2.1 2.5 1 1 1 2 2 2 0 Something about silencing, SAS, complex subunit 4 RNR_N PF08343.5 gi|385775992|ref|YP_005648560.1| - 0.14 11.9 1.4 11 5.9 0.1 2.6 1 1 1 2 2 2 0 Ribonucleotide reductase N-terminal DUF3355 PF11835.3 gi|385775992|ref|YP_005648560.1| - 0.2 11.4 1.2 7.6 6.3 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3355) Mga PF05043.8 gi|385775992|ref|YP_005648560.1| - 0.23 11.7 2.9 0.3 11.3 0.3 2.2 1 1 1 2 2 2 0 Mga helix-turn-helix domain CDC37_C PF08564.5 gi|385775992|ref|YP_005648560.1| - 0.53 10.1 4.8 0.81 9.5 2.3 2.1 1 1 1 2 2 2 0 Cdc37 C terminal domain Gon7 PF08738.5 gi|385775992|ref|YP_005648560.1| - 0.58 10.1 5.8 0.25 11.3 1.6 2.1 2 1 0 2 2 2 0 Gon7 family Filament PF00038.16 gi|385775992|ref|YP_005648560.1| - 0.59 9.5 12.1 2 7.8 0.8 2.0 1 1 1 2 2 2 0 Intermediate filament protein TEX12 PF15219.1 gi|385775992|ref|YP_005648560.1| - 0.6 10.1 4.9 6.2 6.8 0.2 2.5 1 1 2 3 3 3 0 Testis-expressed 12 CDC37_N PF03234.9 gi|385775992|ref|YP_005648560.1| - 0.82 9.9 6.2 4.1 7.7 4.3 1.8 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding TPR_MLP1_2 PF07926.7 gi|385775992|ref|YP_005648560.1| - 0.9 9.2 13.7 1.8 8.3 0.9 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein UPF0449 PF15136.1 gi|385775992|ref|YP_005648560.1| - 0.93 9.7 5.5 0.33 11.1 1.3 1.8 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 Imm3 PF14425.1 gi|385775992|ref|YP_005648560.1| - 0.95 9.4 9.4 0.42 10.5 1.2 2.0 1 1 1 2 2 2 0 Immunity protein Imm3 U1snRNP70_N PF12220.3 gi|385775992|ref|YP_005648560.1| - 0.98 9.7 6.3 7 7.0 0.7 2.1 1 1 1 2 2 2 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal OmpH PF03938.9 gi|385775992|ref|YP_005648560.1| - 1.3 8.9 9.2 3.2 7.6 6.4 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Zein-binding PF04576.10 gi|385775992|ref|YP_005648560.1| - 1.9 8.6 7.5 7.3 6.7 0.1 2.2 1 1 1 2 2 2 0 Zein-binding DUF4200 PF13863.1 gi|385775992|ref|YP_005648560.1| - 2.1 8.3 11.3 2.5 8.0 3.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Prefoldin PF02996.12 gi|385775992|ref|YP_005648560.1| - 2.3 7.8 11.9 1.2 8.8 2.6 2.3 1 1 1 2 2 2 0 Prefoldin subunit FlxA PF14282.1 gi|385775992|ref|YP_005648560.1| - 3.5 7.6 10.5 0.34 10.8 0.8 2.5 2 1 1 3 3 3 0 FlxA-like protein Spc7 PF08317.6 gi|385775992|ref|YP_005648560.1| - 3.6 6.1 12.8 4.6 5.8 8.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|385775992|ref|YP_005648560.1| - 3.7 7.9 9.9 87 3.5 6.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF972) FTA4 PF13093.1 gi|385775992|ref|YP_005648560.1| - 3.8 6.8 10.3 0.83 9.0 3.6 1.9 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF2203 PF09969.4 gi|385775992|ref|YP_005648560.1| - 4.6 7.4 5.7 97 3.2 3.9 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.6 gi|385775992|ref|YP_005648560.1| - 4.6 7.7 8.9 7.3 7.0 0.7 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF4140 PF13600.1 gi|385775992|ref|YP_005648560.1| - 5.3 7.5 10.4 1.8 9.0 1.0 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) XkdW PF09636.5 gi|385775992|ref|YP_005648560.1| - 7.7 6.4 6.9 3.3 7.6 0.5 2.2 2 0 0 2 2 2 0 XkdW protein XhlA PF10779.4 gi|385775992|ref|YP_005648560.1| - 8.2 6.4 11.4 6.7e+02 0.2 7.9 2.2 1 1 0 1 1 1 0 Haemolysin XhlA ERCC4 PF02732.10 gi|385775993|ref|YP_005648561.1| - 3.8e-28 98.0 0.2 6e-28 97.4 0.1 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.2 gi|385775993|ref|YP_005648561.1| - 0.00039 20.2 0.0 0.001 18.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF3641 PF12345.3 gi|385775993|ref|YP_005648561.1| - 0.043 13.6 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3641) HHH_5 PF14520.1 gi|385775993|ref|YP_005648561.1| - 0.11 12.7 0.1 0.44 10.7 0.0 2.1 3 0 0 3 3 3 0 Helix-hairpin-helix domain GTP_EFTU PF00009.22 gi|385775994|ref|YP_005648562.1| - 1.5e-57 194.0 0.1 2.5e-57 193.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|385775994|ref|YP_005648562.1| - 1.5e-31 108.4 0.0 9.1e-31 105.9 0.0 2.4 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|385775994|ref|YP_005648562.1| - 2.7e-23 81.6 0.0 6.6e-23 80.3 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|385775994|ref|YP_005648562.1| - 8e-22 76.9 0.0 2.3e-21 75.4 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|385775994|ref|YP_005648562.1| - 6.4e-12 45.4 0.7 3.4e-11 43.1 0.0 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|385775994|ref|YP_005648562.1| - 0.0003 20.7 0.1 0.001 19.0 0.1 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase HAD_2 PF13419.1 gi|385775995|ref|YP_005648563.1| - 4.1e-26 92.2 0.0 5.2e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385775995|ref|YP_005648563.1| - 9.6e-12 45.7 0.0 1.3e-11 45.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385775995|ref|YP_005648563.1| - 2.9e-08 33.2 0.0 5.2e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|385775995|ref|YP_005648563.1| - 0.00059 20.0 0.5 0.0016 18.6 0.4 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|385775995|ref|YP_005648563.1| - 0.0063 16.3 0.0 0.09 12.6 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Peptidase_M28 PF04389.12 gi|385775996|ref|YP_005648564.1| - 6.1e-07 29.3 0.1 2.3e-06 27.4 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M28 Apolipoprotein PF01442.13 gi|385775996|ref|YP_005648564.1| - 0.045 13.2 0.4 0.19 11.1 0.1 1.9 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain DUF1125 PF06563.6 gi|385775996|ref|YP_005648564.1| - 0.14 11.8 5.5 7.9 6.2 0.0 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1125) DUF447 PF04289.7 gi|385775997|ref|YP_005648565.1| - 3.1e-34 118.0 0.1 3.6e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Iso_dh PF00180.15 gi|385775998|ref|YP_005648566.1| - 2.8e-93 312.6 1.5 3.2e-93 312.4 1.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|385775998|ref|YP_005648566.1| - 0.0095 15.1 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA tRNA-synt_1 PF00133.17 gi|385775999|ref|YP_005648567.1| - 2.7e-169 564.0 0.8 3.7e-169 563.5 0.6 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|385775999|ref|YP_005648567.1| - 4.8e-26 91.3 4.7 1.1e-25 90.1 3.3 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|385775999|ref|YP_005648567.1| - 6.6e-18 64.5 1.4 3.4e-06 25.9 0.0 4.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) Rpr2 PF04032.11 gi|385775999|ref|YP_005648567.1| - 0.0009 19.0 2.1 0.0029 17.4 0.1 2.8 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain tRNA-synt_1_2 PF13603.1 gi|385775999|ref|YP_005648567.1| - 0.0019 17.5 0.6 0.0058 15.9 0.1 2.1 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 Methyltrn_RNA_3 PF02598.12 gi|385776000|ref|YP_005648568.1| - 1.1e-31 110.3 0.3 4.3e-31 108.3 0.2 1.8 1 1 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.17 gi|385776001|ref|YP_005648569.1| - 1.5e-54 185.1 0.0 1.9e-54 184.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|385776002|ref|YP_005648570.1| - 4.1e-37 127.4 0.1 4.9e-37 127.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Hexokinase_1 PF00349.16 gi|385776002|ref|YP_005648570.1| - 0.083 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Hexokinase Ribosomal_L23 PF00276.15 gi|385776003|ref|YP_005648571.1| - 1.6e-14 53.6 2.6 3.9e-14 52.3 1.8 1.6 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.12 gi|385776003|ref|YP_005648571.1| - 0.041 13.4 0.1 0.05 13.2 0.1 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA Ribosomal_L2_C PF03947.13 gi|385776004|ref|YP_005648572.1| - 1.5e-44 150.9 1.2 2.4e-44 150.2 0.9 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|385776004|ref|YP_005648572.1| - 6.3e-14 51.6 0.0 2.2e-13 49.9 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|385776005|ref|YP_005648573.1| - 5.3e-25 86.8 0.7 7e-25 86.4 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 RNA_pol_Rpb2_4 PF04566.8 gi|385776005|ref|YP_005648573.1| - 0.0064 16.2 0.7 0.012 15.4 0.5 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 MerR_1 PF13411.1 gi|385776005|ref|YP_005648573.1| - 0.13 12.0 2.8 0.12 12.1 0.5 2.0 3 0 0 3 3 3 0 MerR HTH family regulatory protein Ribosomal_L22 PF00237.14 gi|385776006|ref|YP_005648574.1| - 9.3e-34 115.5 0.5 1.2e-33 115.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|385776007|ref|YP_005648575.1| - 7e-18 64.6 0.7 1.5e-17 63.5 0.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|385776007|ref|YP_005648575.1| - 6.4e-16 57.6 0.2 1.8e-15 56.2 0.1 1.8 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|385776007|ref|YP_005648575.1| - 0.0061 16.1 1.9 0.0096 15.5 0.2 2.2 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|385776007|ref|YP_005648575.1| - 0.025 14.2 0.7 0.092 12.4 0.5 2.0 1 0 0 1 1 1 0 KH domain RteC PF09357.5 gi|385776007|ref|YP_005648575.1| - 0.036 13.9 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 RteC protein Ribosomal_L29 PF00831.18 gi|385776008|ref|YP_005648576.1| - 7.2e-22 76.8 7.5 8.5e-22 76.6 5.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF29 PF01724.11 gi|385776008|ref|YP_005648576.1| - 0.00057 19.7 0.8 0.00059 19.6 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF29 Uds1 PF15456.1 gi|385776008|ref|YP_005648576.1| - 0.33 10.9 2.7 0.4 10.6 1.6 1.4 1 1 0 1 1 1 0 Up-regulated During Septation UPF0086 PF01868.11 gi|385776009|ref|YP_005648577.1| - 4.3e-11 42.2 0.0 5e-11 42.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|385776010|ref|YP_005648578.1| - 9.2e-22 76.8 1.4 1.2e-21 76.4 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|385776011|ref|YP_005648579.1| - 2e-39 134.0 0.0 2.3e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|385776011|ref|YP_005648579.1| - 0.053 13.6 0.0 0.087 12.9 0.0 1.3 1 0 0 1 1 1 0 PAS fold KOW PF00467.24 gi|385776012|ref|YP_005648580.1| - 1e-07 31.3 0.6 2.2e-07 30.3 0.4 1.7 1 0 0 1 1 1 1 KOW motif GTP_EFTU_D2 PF03144.20 gi|385776012|ref|YP_005648580.1| - 0.0053 16.8 0.2 0.008 16.2 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Methyltrans_RNA PF04452.9 gi|385776012|ref|YP_005648580.1| - 0.11 11.5 0.1 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase Ribosomal_S4e PF00900.15 gi|385776013|ref|YP_005648581.1| - 7.5e-28 96.0 0.2 1.6e-27 94.9 0.1 1.6 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.20 gi|385776013|ref|YP_005648581.1| - 2e-13 49.5 0.2 7.9e-13 47.6 0.1 2.1 2 0 0 2 2 2 1 S4 domain RS4NT PF08071.7 gi|385776013|ref|YP_005648581.1| - 1.1e-07 31.5 0.8 2e-07 30.7 0.5 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4_2 PF13275.1 gi|385776013|ref|YP_005648581.1| - 0.016 14.8 0.1 0.048 13.2 0.0 1.8 2 0 0 2 2 2 0 S4 domain Ribosomal_L5_C PF00673.16 gi|385776014|ref|YP_005648582.1| - 3.7e-26 90.6 0.0 1.2e-25 89.0 0.0 1.7 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|385776014|ref|YP_005648582.1| - 1e-20 73.2 0.1 1.8e-20 72.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Vsr PF03852.10 gi|385776014|ref|YP_005648582.1| - 0.021 14.4 0.6 0.045 13.3 0.0 1.9 2 0 0 2 2 2 0 DNA mismatch endonuclease Vsr URO-D PF01208.12 gi|385776014|ref|YP_005648582.1| - 0.071 12.0 0.0 0.094 11.6 0.0 1.1 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) HTH_17 PF12728.2 gi|385776014|ref|YP_005648582.1| - 5.7 7.2 6.5 16 5.8 0.4 3.0 2 1 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S14 PF00253.16 gi|385776015|ref|YP_005648583.1| - 3.5e-17 61.5 2.7 3.9e-17 61.3 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-HYPF PF07503.7 gi|385776015|ref|YP_005648583.1| - 0.002 17.4 0.8 0.067 12.6 0.0 2.1 2 0 0 2 2 2 1 HypF finger Ribosomal_L37ae PF01780.14 gi|385776015|ref|YP_005648583.1| - 0.011 15.5 0.6 0.014 15.2 0.4 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF2318 PF10080.4 gi|385776015|ref|YP_005648583.1| - 0.039 13.7 0.3 0.043 13.5 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Zn_Tnp_IS1595 PF12760.2 gi|385776015|ref|YP_005648583.1| - 0.046 13.5 2.5 0.056 13.2 1.7 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C4pol PF14260.1 gi|385776015|ref|YP_005648583.1| - 0.1 12.6 1.3 1.2 9.1 0.1 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DUF1451 PF07295.6 gi|385776015|ref|YP_005648583.1| - 0.11 12.2 0.3 0.13 12.0 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Zn_Tnp_IS91 PF14319.1 gi|385776015|ref|YP_005648583.1| - 0.12 11.8 0.4 0.13 11.7 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DZR PF12773.2 gi|385776015|ref|YP_005648583.1| - 0.13 12.1 1.2 0.19 11.5 0.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-P11 PF03854.9 gi|385776015|ref|YP_005648583.1| - 0.14 11.6 0.4 0.18 11.2 0.3 1.2 1 0 0 1 1 1 0 P-11 zinc finger A2L_zn_ribbon PF08792.5 gi|385776015|ref|YP_005648583.1| - 0.19 11.2 2.2 0.3 10.5 1.5 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|385776015|ref|YP_005648583.1| - 1.1 8.9 5.3 5.8 6.6 3.6 1.9 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Prim_Zn_Ribbon PF08273.7 gi|385776015|ref|YP_005648583.1| - 1.4 9.0 4.0 8.3 6.5 2.8 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF2039 PF10217.4 gi|385776015|ref|YP_005648583.1| - 2.2 8.3 5.2 4.1 7.4 3.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) zf-CCHC_3 PF13917.1 gi|385776015|ref|YP_005648583.1| - 7.8 6.3 7.9 49 3.7 5.4 2.2 1 1 0 1 1 1 0 Zinc knuckle Ribosomal_S8 PF00410.14 gi|385776016|ref|YP_005648584.1| - 2.1e-25 89.0 0.0 2.8e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|385776017|ref|YP_005648585.1| - 1.3e-24 86.4 6.9 1.3e-14 54.3 0.7 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DNA_pol3_beta PF00712.14 gi|385776017|ref|YP_005648585.1| - 0.0073 16.1 0.5 0.31 10.9 0.0 2.6 2 1 0 2 2 2 1 DNA polymerase III beta subunit, N-terminal domain RNA_bind_2 PF10133.4 gi|385776017|ref|YP_005648585.1| - 0.1 12.6 0.5 4 7.5 0.3 2.8 2 1 0 2 2 2 0 Predicted RNA-binding protein Ribosomal_L32e PF01655.13 gi|385776018|ref|YP_005648586.1| - 2.3e-38 130.5 0.5 3.1e-38 130.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|385776019|ref|YP_005648587.1| - 8.4e-47 158.6 14.7 9.4e-47 158.4 10.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e YihI PF04220.7 gi|385776019|ref|YP_005648587.1| - 0.92 8.8 6.4 1.4 8.2 4.4 1.2 1 0 0 1 1 1 0 Der GTPase activator (YihI) Ribosomal_L18p PF00861.17 gi|385776020|ref|YP_005648588.1| - 8.5e-34 116.3 0.1 1.2e-33 115.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|385776020|ref|YP_005648588.1| - 2e-11 44.2 0.0 3.9e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_S5 PF00333.15 gi|385776021|ref|YP_005648589.1| - 9.6e-21 73.3 2.2 1.7e-20 72.5 1.5 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|385776021|ref|YP_005648589.1| - 3.6e-20 71.0 0.0 7.7e-20 69.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|385776022|ref|YP_005648590.1| - 2.1e-16 59.2 0.2 6.3e-16 57.6 0.0 1.9 3 0 0 3 3 3 1 Ribosomal protein L30p/L7e Reovirus_Mu2 PF07781.6 gi|385776022|ref|YP_005648590.1| - 0.0036 15.3 0.0 0.0043 15.1 0.0 1.0 1 0 0 1 1 1 1 Reovirus minor core protein Mu-2 Ribosomal_L18e PF00828.14 gi|385776023|ref|YP_005648591.1| - 2.8e-28 98.8 1.2 4e-28 98.3 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|385776024|ref|YP_005648592.1| - 5.7e-78 262.2 33.7 8.2e-78 261.7 23.4 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|385776024|ref|YP_005648592.1| - 1.4e-08 34.0 0.6 1.4e-08 34.0 0.4 2.9 3 0 0 3 3 3 1 Plug domain of Sec61p AAA_18 PF13238.1 gi|385776025|ref|YP_005648593.1| - 9.4e-12 45.3 0.1 1.2e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385776025|ref|YP_005648593.1| - 1.8e-06 28.7 0.1 3e-06 28.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|385776025|ref|YP_005648593.1| - 0.00032 20.1 0.1 0.14 11.5 0.0 2.3 2 1 0 2 2 2 2 Thymidylate kinase AAA_28 PF13521.1 gi|385776025|ref|YP_005648593.1| - 0.0021 18.0 0.0 0.0042 17.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385776025|ref|YP_005648593.1| - 0.0065 16.4 0.0 0.0087 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|385776025|ref|YP_005648593.1| - 0.0076 15.9 0.4 0.017 14.8 0.2 1.5 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.1 gi|385776025|ref|YP_005648593.1| - 0.031 13.8 0.1 0.086 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|385776025|ref|YP_005648593.1| - 0.061 12.5 0.0 0.094 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|385776025|ref|YP_005648593.1| - 0.068 13.3 1.1 0.13 12.3 0.8 1.7 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|385776025|ref|YP_005648593.1| - 0.075 11.7 0.1 0.12 11.0 0.1 1.4 1 0 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|385776025|ref|YP_005648593.1| - 0.098 12.4 0.4 0.098 12.4 0.3 2.0 3 0 0 3 3 3 0 Part of AAA domain DUF106 PF01956.11 gi|385776026|ref|YP_005648594.1| - 0.0019 17.7 1.0 0.0024 17.4 0.7 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 SNARE_assoc PF09335.6 gi|385776026|ref|YP_005648594.1| - 0.0029 17.7 0.5 0.0053 16.9 0.4 1.5 1 0 0 1 1 1 1 SNARE associated Golgi protein RGS PF00615.14 gi|385776026|ref|YP_005648594.1| - 0.029 14.4 2.0 0.053 13.6 1.4 1.4 1 0 0 1 1 1 0 Regulator of G protein signaling domain UPF0122 PF04297.9 gi|385776026|ref|YP_005648594.1| - 0.037 14.0 1.4 0.067 13.2 1.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DDE_Tnp_1_6 PF13751.1 gi|385776026|ref|YP_005648594.1| - 0.056 13.4 0.0 0.075 13.0 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain DUF2400 PF09674.5 gi|385776026|ref|YP_005648594.1| - 0.12 12.0 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Ribosomal_L34e PF01199.13 gi|385776027|ref|YP_005648595.1| - 8.3e-27 93.2 1.8 9e-27 93.1 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Endonuclease_7 PF02945.10 gi|385776027|ref|YP_005648595.1| - 0.058 13.1 0.1 0.069 12.8 0.1 1.2 1 0 0 1 1 1 0 Recombination endonuclease VII zf-P11 PF03854.9 gi|385776027|ref|YP_005648595.1| - 0.065 12.7 1.2 4.8 6.7 0.1 2.2 2 0 0 2 2 2 0 P-11 zinc finger PHD PF00628.24 gi|385776027|ref|YP_005648595.1| - 0.088 12.5 0.9 0.26 11.0 0.6 1.7 1 1 0 1 1 1 0 PHD-finger DUF4428 PF14471.1 gi|385776027|ref|YP_005648595.1| - 0.094 12.4 0.9 0.67 9.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DUF581 PF04570.9 gi|385776027|ref|YP_005648595.1| - 0.13 11.5 0.2 0.13 11.5 0.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF581) Cytidylate_kin2 PF13189.1 gi|385776028|ref|YP_005648596.1| - 1.7e-21 76.9 1.7 2.7e-20 73.0 1.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|385776028|ref|YP_005648596.1| - 9.7e-19 67.9 0.2 1.3e-18 67.4 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385776028|ref|YP_005648596.1| - 6.5e-12 46.3 0.4 1.4e-11 45.2 0.2 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|385776028|ref|YP_005648596.1| - 1.4e-06 28.2 0.3 2.4e-06 27.4 0.2 1.5 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|385776028|ref|YP_005648596.1| - 6.2e-06 26.1 0.0 1.8e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|385776028|ref|YP_005648596.1| - 1.1e-05 25.4 0.0 2.1e-05 24.4 0.0 1.5 2 0 0 2 2 2 1 Adenylate kinase AAA PF00004.24 gi|385776028|ref|YP_005648596.1| - 1.3e-05 25.4 0.0 2.8e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|385776028|ref|YP_005648596.1| - 4.4e-05 23.1 0.1 0.00049 19.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385776028|ref|YP_005648596.1| - 8.4e-05 22.2 0.0 0.00015 21.4 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|385776028|ref|YP_005648596.1| - 0.0004 20.5 0.0 0.00071 19.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|385776028|ref|YP_005648596.1| - 0.00065 18.9 0.1 0.0037 16.4 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 TIP49 PF06068.8 gi|385776028|ref|YP_005648596.1| - 0.0011 17.7 0.0 0.0015 17.2 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus Zot PF05707.7 gi|385776028|ref|YP_005648596.1| - 0.0013 18.2 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DUF2075 PF09848.4 gi|385776028|ref|YP_005648596.1| - 0.0014 17.6 0.0 0.002 17.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|385776028|ref|YP_005648596.1| - 0.0017 17.4 0.2 0.0031 16.6 0.0 1.5 2 0 0 2 2 1 1 Zeta toxin RNA_helicase PF00910.17 gi|385776028|ref|YP_005648596.1| - 0.0018 18.3 0.1 0.0091 16.1 0.0 2.1 2 0 0 2 2 2 1 RNA helicase AAA_28 PF13521.1 gi|385776028|ref|YP_005648596.1| - 0.0023 17.9 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|385776028|ref|YP_005648596.1| - 0.0039 16.9 0.0 0.0059 16.3 0.0 1.3 1 0 0 1 1 1 1 NTPase CoaE PF01121.15 gi|385776028|ref|YP_005648596.1| - 0.0055 16.1 0.2 0.6 9.4 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase RuvB_N PF05496.7 gi|385776028|ref|YP_005648596.1| - 0.0061 15.6 0.0 0.01 14.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus IPT PF01745.11 gi|385776028|ref|YP_005648596.1| - 0.013 14.6 0.2 0.029 13.5 0.0 1.7 2 0 0 2 2 2 0 Isopentenyl transferase AAA_16 PF13191.1 gi|385776028|ref|YP_005648596.1| - 0.018 15.0 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|385776028|ref|YP_005648596.1| - 0.021 14.7 0.5 0.05 13.5 0.3 1.9 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|385776028|ref|YP_005648596.1| - 0.038 12.8 0.2 0.34 9.7 0.1 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.7 gi|385776028|ref|YP_005648596.1| - 0.038 13.6 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|385776028|ref|YP_005648596.1| - 0.044 13.3 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385776028|ref|YP_005648596.1| - 0.047 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Glyco_tran_WbsX PF14307.1 gi|385776028|ref|YP_005648596.1| - 0.065 12.3 0.1 0.083 12.0 0.1 1.1 1 0 0 1 1 1 0 Glycosyltransferase WbsX AAA_10 PF12846.2 gi|385776028|ref|YP_005648596.1| - 0.081 12.3 0.2 0.61 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain APS_kinase PF01583.15 gi|385776028|ref|YP_005648596.1| - 0.09 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|385776028|ref|YP_005648596.1| - 0.092 12.1 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|385776028|ref|YP_005648596.1| - 0.099 12.0 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein PRK PF00485.13 gi|385776028|ref|YP_005648596.1| - 0.11 12.0 0.6 0.35 10.3 0.0 2.0 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.9 gi|385776028|ref|YP_005648596.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF1430 PF07242.6 gi|385776031|ref|YP_005648599.1| - 0.085 12.9 5.0 0.094 12.7 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1430) SdpI PF13630.1 gi|385776031|ref|YP_005648599.1| - 0.17 11.5 5.2 0.18 11.5 3.6 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF3278 PF11683.3 gi|385776031|ref|YP_005648599.1| - 0.21 11.6 4.7 0.21 11.5 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) VP7 PF00434.13 gi|385776031|ref|YP_005648599.1| - 1.9 7.3 5.8 2 7.2 4.0 1.0 1 0 0 1 1 1 0 Glycoprotein VP7 DUF843 PF05814.6 gi|385776031|ref|YP_005648599.1| - 9.2 6.1 10.2 13 5.6 7.1 1.3 1 1 0 1 1 1 0 Baculovirus protein of unknown function (DUF843) Archease PF01951.11 gi|385776032|ref|YP_005648600.1| - 1.3e-46 157.9 0.6 1.4e-46 157.8 0.4 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|385776032|ref|YP_005648600.1| - 0.055 13.0 0.2 2.4 7.8 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) Peptidase_M54 PF07998.6 gi|385776033|ref|YP_005648601.1| - 2.3e-61 206.9 2.8 2.6e-61 206.7 1.9 1.0 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|385776033|ref|YP_005648601.1| - 0.0028 17.3 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|385776033|ref|YP_005648601.1| - 0.0093 14.8 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M43 PF05572.8 gi|385776033|ref|YP_005648601.1| - 0.012 15.2 0.1 0.019 14.5 0.1 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_2 PF13574.1 gi|385776033|ref|YP_005648601.1| - 0.027 14.5 0.8 0.051 13.6 0.5 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like MIF4G PF02854.14 gi|385776033|ref|YP_005648601.1| - 0.044 13.1 0.2 0.069 12.5 0.1 1.3 1 0 0 1 1 1 0 MIF4G domain Reprolysin_5 PF13688.1 gi|385776033|ref|YP_005648601.1| - 0.074 12.9 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.1 gi|385776033|ref|YP_005648601.1| - 0.092 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|385776033|ref|YP_005648601.1| - 0.11 10.9 0.5 0.15 10.5 0.4 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_3 PF13582.1 gi|385776033|ref|YP_005648601.1| - 0.17 12.3 0.4 0.3 11.5 0.3 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Acetyltransf_7 PF13508.1 gi|385776034|ref|YP_005648602.1| - 4.4e-07 29.9 0.1 6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385776034|ref|YP_005648602.1| - 8.6e-05 22.2 0.2 0.00041 20.0 0.1 1.9 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.19 gi|385776034|ref|YP_005648602.1| - 8.7e-05 22.4 0.4 0.00085 19.3 0.3 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|385776034|ref|YP_005648602.1| - 0.042 13.7 0.0 0.056 13.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Asp_protease_2 PF13650.1 gi|385776035|ref|YP_005648603.1| - 0.023 15.2 0.0 0.035 14.6 0.0 1.2 1 0 0 1 1 1 0 Aspartyl protease Myb_DNA-bind_4 PF13837.1 gi|385776036|ref|YP_005648604.1| - 0.0025 17.8 0.1 0.0028 17.7 0.1 1.1 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain Biotin_lipoyl PF00364.17 gi|385776036|ref|YP_005648604.1| - 0.12 11.9 0.2 0.15 11.7 0.2 1.2 1 0 0 1 1 1 0 Biotin-requiring enzyme SSV1_ORF_D-335 PF07935.6 gi|385776038|ref|YP_005648606.1| - 3.3e-27 94.0 0.3 3.9e-27 93.7 0.2 1.0 1 0 0 1 1 1 1 ORF D-335-like protein OrfB_IS605 PF01385.14 gi|385776039|ref|YP_005648607.1| - 1.5e-26 93.1 6.7 2e-26 92.8 4.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385776039|ref|YP_005648607.1| - 8.1e-24 83.0 0.0 1.7e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385776039|ref|YP_005648607.1| - 0.024 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385776039|ref|YP_005648607.1| - 0.06 12.9 0.6 0.68 9.5 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385776039|ref|YP_005648607.1| - 0.087 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|385776039|ref|YP_005648607.1| - 0.17 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385776039|ref|YP_005648607.1| - 0.3 10.8 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385776039|ref|YP_005648607.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385776039|ref|YP_005648607.1| - 6.8 6.6 5.4 5 7.0 0.4 3.1 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Apolipoprotein PF01442.13 gi|385776040|ref|YP_005648608.1| - 2.9e-05 23.6 4.5 4e-05 23.2 3.1 1.4 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF4143 PF13635.1 gi|385776040|ref|YP_005648608.1| - 9.1e-05 22.5 3.0 0.00013 22.0 1.9 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) UPF0102 PF02021.12 gi|385776040|ref|YP_005648608.1| - 0.00021 21.1 0.1 0.00054 19.8 0.0 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NERD PF08378.6 gi|385776040|ref|YP_005648608.1| - 0.0023 18.1 1.6 0.013 15.7 0.1 2.4 1 1 1 2 2 2 1 Nuclease-related domain DUF1626 PF07788.6 gi|385776040|ref|YP_005648608.1| - 0.0028 17.4 1.8 0.0034 17.1 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1626) Gp58 PF07902.6 gi|385776040|ref|YP_005648608.1| - 0.0057 14.9 3.1 0.0063 14.7 2.2 1.1 1 0 0 1 1 1 1 gp58-like protein ING PF12998.2 gi|385776040|ref|YP_005648608.1| - 0.33 11.2 11.4 0.61 10.3 6.9 2.2 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding FliT PF05400.8 gi|385776040|ref|YP_005648608.1| - 0.5 10.8 11.0 2.8 8.4 7.6 2.2 1 1 0 1 1 1 0 Flagellar protein FliT Baculo_PEP_C PF04513.7 gi|385776040|ref|YP_005648608.1| - 0.63 9.8 6.1 5.2 6.8 4.0 2.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3213 PF11491.3 gi|385776040|ref|YP_005648608.1| - 0.75 9.7 6.1 3.1 7.7 2.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3213) hDGE_amylase PF14701.1 gi|385776040|ref|YP_005648608.1| - 0.86 8.4 5.1 1.1 8.0 3.5 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme ApoLp-III PF07464.6 gi|385776040|ref|YP_005648608.1| - 1.9 8.4 11.0 12 5.9 7.6 2.3 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) BDV_P24 PF06595.6 gi|385776040|ref|YP_005648608.1| - 2.3 7.9 8.8 3.6 7.2 5.8 1.7 1 1 0 1 1 1 0 Borna disease virus P24 protein DUF1664 PF07889.7 gi|385776040|ref|YP_005648608.1| - 2.5 7.8 8.6 0.31 10.8 0.5 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF4546 PF15079.1 gi|385776040|ref|YP_005648608.1| - 4.1 6.4 12.9 2.7 7.1 2.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4546) OmpH PF03938.9 gi|385776040|ref|YP_005648608.1| - 5.9 6.7 10.2 12 5.7 7.1 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) IncA PF04156.9 gi|385776040|ref|YP_005648608.1| - 6.1 6.4 10.3 9.5 5.7 5.3 2.0 1 1 1 2 2 2 0 IncA protein PTPlike_phytase PF14566.1 gi|385776040|ref|YP_005648608.1| - 8.1 6.4 6.8 32 4.5 4.7 2.1 1 1 0 1 1 1 0 Inositol hexakisphosphate CARDB PF07705.6 gi|385776042|ref|YP_005648610.1| - 7.2e-08 32.4 12.8 1.3e-05 25.1 0.7 3.4 3 1 0 3 3 3 2 CARDB NPCBM_assoc PF10633.4 gi|385776042|ref|YP_005648610.1| - 0.0025 17.8 3.0 0.052 13.6 0.1 3.5 3 1 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|385776042|ref|YP_005648610.1| - 0.0033 16.6 9.0 0.03 13.4 1.1 2.9 2 1 1 3 3 3 2 Translocon-associated protein beta (TRAPB) Wzt_C PF14524.1 gi|385776042|ref|YP_005648610.1| - 0.0099 15.5 6.1 0.046 13.4 0.2 3.3 2 1 2 4 4 4 1 Wzt C-terminal domain Rifin_STEVOR PF02009.11 gi|385776042|ref|YP_005648610.1| - 0.083 12.5 0.8 0.1 12.1 0.5 1.4 1 0 0 1 1 1 0 Rifin/stevor family SBP_bac_7 PF03480.8 gi|385776042|ref|YP_005648610.1| - 0.093 11.8 0.4 0.3 10.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 Coatamer_beta_C PF07718.7 gi|385776042|ref|YP_005648610.1| - 0.11 12.1 1.8 0.28 10.8 0.2 2.1 2 0 0 2 2 2 0 Coatomer beta C-terminal region Transglut_C PF00927.17 gi|385776042|ref|YP_005648610.1| - 0.22 11.5 7.6 0.12 12.4 0.2 3.4 3 2 1 4 4 4 0 Transglutaminase family, C-terminal ig like domain DUF11 PF01345.13 gi|385776042|ref|YP_005648610.1| - 4 7.5 17.2 1 9.4 1.4 3.5 3 0 0 3 3 3 0 Domain of unknown function DUF11 MacB_PCD PF12704.2 gi|385776043|ref|YP_005648611.1| - 5.7e-29 101.3 4.4 5.7e-29 101.3 3.1 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|385776043|ref|YP_005648611.1| - 3.3e-18 65.5 17.9 3.3e-18 65.5 12.4 3.1 2 2 0 2 2 2 1 FtsX-like permease family DUF2628 PF10947.3 gi|385776043|ref|YP_005648611.1| - 0.045 13.5 0.4 0.045 13.5 0.3 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2628) FAM70 PF14967.1 gi|385776043|ref|YP_005648611.1| - 0.13 11.4 3.7 0.17 11.0 0.2 2.2 2 0 0 2 2 2 0 FAM70 protein Glu_synthase PF01645.12 gi|385776044|ref|YP_005648612.1| - 3.1e-101 338.9 1.1 8.5e-98 327.6 0.4 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|385776044|ref|YP_005648612.1| - 5.3e-11 42.3 0.1 7.6e-07 28.6 0.0 3.2 2 1 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|385776044|ref|YP_005648612.1| - 6.3e-07 28.5 12.1 8.8e-06 24.7 3.5 3.3 4 0 0 4 4 4 2 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|385776044|ref|YP_005648612.1| - 0.0049 15.8 2.1 0.013 14.5 1.5 1.7 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|385776044|ref|YP_005648612.1| - 0.0051 15.8 0.2 0.061 12.2 0.1 2.3 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|385776044|ref|YP_005648612.1| - 0.033 13.4 4.6 1.8 7.7 0.2 2.8 2 1 1 3 3 3 0 PcrB family IMPDH PF00478.20 gi|385776044|ref|YP_005648612.1| - 0.048 12.5 3.1 0.64 8.8 3.7 1.7 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|385776044|ref|YP_005648612.1| - 0.64 9.1 8.3 3.3 6.7 5.2 2.1 1 1 1 2 2 2 0 Nitronate monooxygenase GXGXG PF01493.14 gi|385776045|ref|YP_005648613.1| - 1.2e-24 86.4 12.3 5e-24 84.4 8.5 2.1 1 1 0 1 1 1 1 GXGXG motif GATase_2 PF00310.16 gi|385776045|ref|YP_005648613.1| - 4.3e-16 58.5 0.0 3e-15 55.7 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|385776045|ref|YP_005648613.1| - 2.9e-15 56.3 0.0 6.2e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|385776045|ref|YP_005648613.1| - 5.8e-06 26.0 0.0 2.8e-05 23.8 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain RRM_5 PF13893.1 gi|385776045|ref|YP_005648613.1| - 0.011 15.5 0.4 0.053 13.3 0.0 2.2 2 0 0 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SHOCT PF09851.4 gi|385776045|ref|YP_005648613.1| - 0.013 14.9 5.8 0.02 14.3 0.1 2.9 2 0 0 2 2 2 0 Short C-terminal domain RRM_6 PF14259.1 gi|385776045|ref|YP_005648613.1| - 0.019 14.9 0.0 0.051 13.5 0.0 1.8 1 0 0 1 1 1 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.17 gi|385776045|ref|YP_005648613.1| - 0.082 12.5 0.0 0.35 10.5 0.0 2.1 1 1 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DUF3662 PF12401.3 gi|385776045|ref|YP_005648613.1| - 0.12 12.5 0.3 0.31 11.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2662) NTS PF15447.1 gi|385776045|ref|YP_005648613.1| - 0.29 11.5 2.4 1.7 9.0 0.0 2.9 3 0 0 3 3 3 0 N-terminal segments of PfEMP1 Glycos_transf_1 PF00534.15 gi|385776046|ref|YP_005648614.1| - 2.7e-21 75.7 0.9 5e-21 74.8 0.6 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385776046|ref|YP_005648614.1| - 0.0002 21.5 0.0 0.00047 20.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385776046|ref|YP_005648614.1| - 0.0034 17.1 0.0 0.0055 16.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DUF3206 PF11472.3 gi|385776046|ref|YP_005648614.1| - 0.095 12.4 0.2 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3206) Glycos_transf_2 PF00535.21 gi|385776047|ref|YP_005648615.1| - 2.9e-11 43.3 0.8 4.3e-11 42.7 0.6 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|385776047|ref|YP_005648615.1| - 4.5e-07 29.2 3.5 1.2e-05 24.5 2.4 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|385776047|ref|YP_005648615.1| - 0.00011 21.9 0.4 0.031 13.9 0.2 2.1 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|385776047|ref|YP_005648615.1| - 0.00014 21.7 0.1 0.0043 16.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_8 PF01501.15 gi|385776047|ref|YP_005648615.1| - 0.0061 15.9 0.8 0.0089 15.3 0.5 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 8 Glyco_tranf_2_4 PF13704.1 gi|385776047|ref|YP_005648615.1| - 0.0071 16.6 0.1 0.012 15.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|385776047|ref|YP_005648615.1| - 0.0087 15.3 0.1 0.021 14.0 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Amidohydro_1 PF01979.15 gi|385776048|ref|YP_005648616.1| - 4.9e-34 118.4 0.1 6.3e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385776048|ref|YP_005648616.1| - 2.6e-13 50.6 0.0 5e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|385776048|ref|YP_005648616.1| - 2e-09 37.1 0.2 1.3e-07 31.2 0.0 2.7 3 0 0 3 3 3 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|385776048|ref|YP_005648616.1| - 9e-07 28.6 0.0 3e-06 26.9 0.0 2.0 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|385776048|ref|YP_005648616.1| - 0.00038 19.4 0.0 0.001 18.0 0.0 1.7 2 0 0 2 2 2 1 Adenosine/AMP deaminase ATP_bind_4 PF01902.12 gi|385776049|ref|YP_005648617.1| - 2.7e-57 193.6 0.0 3.1e-57 193.4 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|385776049|ref|YP_005648617.1| - 0.0059 15.9 0.0 0.017 14.4 0.0 1.9 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC NTP_transf_3 PF12804.2 gi|385776050|ref|YP_005648618.1| - 1.8e-20 73.6 0.0 2.1e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain MoeA_N PF03453.12 gi|385776051|ref|YP_005648619.1| - 2.8e-44 150.3 0.0 4.2e-44 149.7 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|385776051|ref|YP_005648619.1| - 8.6e-20 70.6 0.2 1.4e-19 69.9 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|385776051|ref|YP_005648619.1| - 0.027 14.4 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 MoeA C-terminal region (domain IV) MobB PF03205.9 gi|385776052|ref|YP_005648620.1| - 1.7e-29 102.2 0.4 2.2e-29 101.9 0.3 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|385776052|ref|YP_005648620.1| - 0.0005 20.5 0.0 0.00095 19.6 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein AAA_15 PF13175.1 gi|385776052|ref|YP_005648620.1| - 0.0025 16.9 0.7 0.0031 16.6 0.5 1.0 1 0 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|385776052|ref|YP_005648620.1| - 0.02 14.5 0.2 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.1 gi|385776052|ref|YP_005648620.1| - 0.029 14.3 0.0 0.04 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|385776052|ref|YP_005648620.1| - 0.031 14.4 0.0 0.062 13.4 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|385776052|ref|YP_005648620.1| - 0.043 13.2 0.1 0.073 12.5 0.1 1.3 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|385776052|ref|YP_005648620.1| - 0.065 12.9 1.6 0.11 12.2 1.1 1.4 1 1 0 1 1 1 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|385776052|ref|YP_005648620.1| - 0.098 11.2 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CBS PF00571.23 gi|385776053|ref|YP_005648621.1| - 3.9e-23 80.9 6.1 2.9e-08 33.3 0.0 4.4 4 1 0 4 4 4 3 CBS domain Methyltransf_11 PF08241.7 gi|385776054|ref|YP_005648622.1| - 5e-17 62.1 0.0 7.9e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385776054|ref|YP_005648622.1| - 2.7e-09 36.7 0.0 4.8e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385776054|ref|YP_005648622.1| - 1.5e-08 35.0 0.0 2.7e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385776054|ref|YP_005648622.1| - 2.7e-07 30.8 0.0 4.4e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385776054|ref|YP_005648622.1| - 3.9e-07 29.9 0.0 5.8e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385776054|ref|YP_005648622.1| - 0.00039 19.5 0.0 0.00057 19.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|385776054|ref|YP_005648622.1| - 0.016 15.7 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|385776054|ref|YP_005648622.1| - 0.021 14.4 0.0 0.044 13.4 0.0 1.6 2 0 0 2 2 2 0 Hypothetical methyltransferase DUF2407_C PF13373.1 gi|385776055|ref|YP_005648623.1| - 0.7 9.8 6.2 0.093 12.6 1.0 2.0 2 1 1 3 3 3 0 DUF2407 C-terminal domain 7tm_3 PF00003.17 gi|385776055|ref|YP_005648623.1| - 0.84 8.9 10.2 1.1 8.5 0.8 2.0 1 1 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF1705 PF08019.7 gi|385776055|ref|YP_005648623.1| - 6.4 6.2 8.9 10 5.5 0.9 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1705) DUF456 PF04306.8 gi|385776056|ref|YP_005648624.1| - 0.0014 18.6 3.4 0.0019 18.2 2.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF456) Gly-zipper_OmpA PF13436.1 gi|385776056|ref|YP_005648624.1| - 0.048 13.3 2.4 0.062 12.9 1.6 1.1 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Gly-zipper_Omp PF13488.1 gi|385776056|ref|YP_005648624.1| - 0.063 12.9 8.2 0.11 12.2 5.7 1.4 1 0 0 1 1 1 0 Glycine zipper Bacteriocin_IIc PF10439.4 gi|385776056|ref|YP_005648624.1| - 0.064 13.3 5.3 0.13 12.3 3.7 1.5 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Rick_17kDa_Anti PF05433.10 gi|385776056|ref|YP_005648624.1| - 0.066 12.8 12.7 0.1 12.3 8.8 1.3 1 0 0 1 1 1 0 Glycine zipper 2TM domain DUF1269 PF06897.7 gi|385776056|ref|YP_005648624.1| - 2.2 8.3 5.4 3.1 7.8 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) PP_kinase_C PF13090.1 gi|385776057|ref|YP_005648625.1| - 0.02 13.5 0.1 0.022 13.3 0.0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain DUF2232 PF09991.4 gi|385776057|ref|YP_005648625.1| - 0.086 11.8 0.1 0.091 11.7 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) Fe_dep_repr_C PF02742.10 gi|385776058|ref|YP_005648626.1| - 7.4e-28 96.0 1.2 1.2e-27 95.4 0.2 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|385776058|ref|YP_005648626.1| - 5.6e-12 45.4 0.4 8.2e-11 41.6 0.1 2.8 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|385776058|ref|YP_005648626.1| - 1.7e-08 34.0 0.0 7.4e-08 31.9 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|385776058|ref|YP_005648626.1| - 2.3e-07 30.5 0.4 5.6e-07 29.2 0.3 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|385776058|ref|YP_005648626.1| - 2.3e-07 30.0 0.3 4.1e-06 26.0 0.1 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|385776058|ref|YP_005648626.1| - 2.7e-07 30.1 0.1 1.5e-06 27.7 0.0 2.2 3 0 0 3 3 2 1 MarR family HTH_5 PF01022.15 gi|385776058|ref|YP_005648626.1| - 2.8e-07 30.0 0.0 6.3e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|385776058|ref|YP_005648626.1| - 1.4e-06 28.5 0.1 4.5e-06 26.8 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|385776058|ref|YP_005648626.1| - 1.7e-05 24.2 0.0 3.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_41 PF14502.1 gi|385776058|ref|YP_005648626.1| - 3.5e-05 23.3 0.1 0.00084 18.8 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|385776058|ref|YP_005648626.1| - 8.7e-05 22.1 0.1 0.00023 20.8 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|385776058|ref|YP_005648626.1| - 9.4e-05 21.7 0.0 0.00054 19.3 0.0 2.3 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|385776058|ref|YP_005648626.1| - 0.00028 20.5 0.1 0.00052 19.6 0.1 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF2250 PF10007.4 gi|385776058|ref|YP_005648626.1| - 0.00047 20.0 0.3 0.00099 18.9 0.2 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) FeoA PF04023.9 gi|385776058|ref|YP_005648626.1| - 0.00059 19.7 0.8 0.002 18.0 0.4 2.1 2 1 0 2 2 2 1 FeoA domain DUF4423 PF14394.1 gi|385776058|ref|YP_005648626.1| - 0.00061 19.3 0.1 0.0011 18.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Phage_rep_org_N PF09681.5 gi|385776058|ref|YP_005648626.1| - 0.00072 19.1 0.1 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_Crp_2 PF13545.1 gi|385776058|ref|YP_005648626.1| - 0.00076 19.2 0.6 0.0019 17.9 0.0 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|385776058|ref|YP_005648626.1| - 0.0012 18.9 0.1 0.0024 17.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|385776058|ref|YP_005648626.1| - 0.0014 18.4 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_20 PF12840.2 gi|385776058|ref|YP_005648626.1| - 0.0016 18.1 0.0 0.0044 16.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|385776058|ref|YP_005648626.1| - 0.0038 16.9 0.2 0.018 14.8 0.0 2.2 2 1 1 3 3 3 1 Transcriptional regulator PadR-like family HTH_1 PF00126.22 gi|385776058|ref|YP_005648626.1| - 0.012 15.3 0.0 0.042 13.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Ribosomal_S19e PF01090.14 gi|385776058|ref|YP_005648626.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e AAA_assoc_C PF09821.4 gi|385776058|ref|YP_005648626.1| - 0.014 15.6 0.1 0.027 14.7 0.0 1.5 1 0 0 1 1 1 0 C-terminal AAA-associated domain HTH_34 PF13601.1 gi|385776058|ref|YP_005648626.1| - 0.014 15.3 0.1 0.033 14.2 0.1 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|385776058|ref|YP_005648626.1| - 0.019 14.6 0.2 0.17 11.5 0.0 2.6 2 1 1 3 3 2 0 HTH domain Mrr_N PF14338.1 gi|385776058|ref|YP_005648626.1| - 0.019 15.0 0.2 0.056 13.5 0.0 1.8 2 0 0 2 2 1 0 Mrr N-terminal domain Rrf2 PF02082.15 gi|385776058|ref|YP_005648626.1| - 0.021 14.9 0.1 0.077 13.1 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator HTH_29 PF13551.1 gi|385776058|ref|YP_005648626.1| - 0.03 14.4 0.2 0.18 11.9 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn helix hSH3 PF14603.1 gi|385776058|ref|YP_005648626.1| - 0.035 14.1 0.3 0.32 11.0 0.1 2.2 2 0 0 2 2 2 0 Helically-extended SH3 domain HTH_28 PF13518.1 gi|385776058|ref|YP_005648626.1| - 0.036 14.0 0.0 0.17 11.8 0.0 2.2 1 1 1 2 2 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|385776058|ref|YP_005648626.1| - 0.041 13.3 0.0 0.12 11.8 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding EAP30 PF04157.11 gi|385776058|ref|YP_005648626.1| - 0.061 12.4 0.0 0.14 11.3 0.0 1.5 2 0 0 2 2 2 0 EAP30/Vps36 family DUF4364 PF14277.1 gi|385776058|ref|YP_005648626.1| - 0.065 12.8 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF4393 PF14337.1 gi|385776058|ref|YP_005648626.1| - 0.065 12.6 0.2 0.098 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) RPA_C PF08784.6 gi|385776058|ref|YP_005648626.1| - 0.16 12.4 0.0 3.5 8.0 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal Antitoxin-MazE PF04014.13 gi|385776058|ref|YP_005648626.1| - 0.33 10.7 3.3 0.18 11.5 0.5 2.0 2 0 0 2 2 2 0 Antidote-toxin recognition MazE DUF2250 PF10007.4 gi|385776059|ref|YP_005648627.1| - 8.3e-06 25.6 0.2 2.4e-05 24.1 0.2 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4147 PF13660.1 gi|385776060|ref|YP_005648628.1| - 2.2e-55 187.3 0.0 3.1e-55 186.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|385776060|ref|YP_005648628.1| - 2.5e-32 111.1 0.2 8.3e-32 109.4 0.2 1.9 2 0 0 2 2 2 1 MOFRL family Oxidored_q6 PF01058.17 gi|385776061|ref|YP_005648629.1| - 7.2e-20 70.9 0.0 9.5e-20 70.5 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Sua5_yciO_yrdC PF01300.13 gi|385776062|ref|YP_005648630.1| - 4.6e-57 192.1 0.1 6.6e-57 191.6 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|385776062|ref|YP_005648630.1| - 4.9e-28 97.7 0.0 1e-27 96.7 0.0 1.5 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Glyco_trans_4_2 PF13477.1 gi|385776062|ref|YP_005648630.1| - 1.9e-05 24.5 0.0 3.4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_28 PF03033.15 gi|385776062|ref|YP_005648630.1| - 0.065 12.9 0.0 0.25 11.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Oxidored_nitro PF00148.14 gi|385776062|ref|YP_005648630.1| - 0.069 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase BPL_LplA_LipB PF03099.14 gi|385776063|ref|YP_005648631.1| - 8.4e-23 80.7 0.0 1.3e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Tn7_Tnp_TnsA_C PF08721.6 gi|385776063|ref|YP_005648631.1| - 0.03 14.3 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 TnsA endonuclease C terminal DUF3781 PF12636.2 gi|385776063|ref|YP_005648631.1| - 0.039 13.9 0.8 0.099 12.6 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3781) HTH_23 PF13384.1 gi|385776064|ref|YP_005648632.1| - 6.8e-10 38.2 0.1 2.8e-09 36.3 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|385776064|ref|YP_005648632.1| - 4.1e-08 33.0 0.0 6.8e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|385776064|ref|YP_005648632.1| - 7.1e-06 25.4 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|385776064|ref|YP_005648632.1| - 8e-05 22.0 0.0 0.00013 21.3 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Terminase_5 PF06056.7 gi|385776064|ref|YP_005648632.1| - 8.9e-05 21.9 0.0 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.1 gi|385776064|ref|YP_005648632.1| - 0.00022 21.3 0.1 0.0004 20.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|385776064|ref|YP_005648632.1| - 0.0032 17.4 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Transposase GerE PF00196.14 gi|385776064|ref|YP_005648632.1| - 0.011 15.0 0.0 0.032 13.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.1 gi|385776064|ref|YP_005648632.1| - 0.017 14.2 0.0 0.029 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_IS630 PF01710.11 gi|385776064|ref|YP_005648632.1| - 0.027 14.1 0.0 0.034 13.8 0.0 1.1 1 0 0 1 1 1 0 Transposase HTH_24 PF13412.1 gi|385776064|ref|YP_005648632.1| - 0.057 12.8 0.0 0.27 10.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding CENP-B_N PF04218.8 gi|385776064|ref|YP_005648632.1| - 0.084 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_40 PF14493.1 gi|385776064|ref|YP_005648632.1| - 0.1 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|385776064|ref|YP_005648632.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase PmbA_TldD PF01523.11 gi|385776065|ref|YP_005648633.1| - 1.2e-33 116.6 0.2 1.7e-33 116.1 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|385776066|ref|YP_005648634.1| - 6.1e-45 153.7 2.2 7.6e-45 153.4 1.5 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase NikR_C PF08753.6 gi|385776067|ref|YP_005648635.1| - 2.4e-23 81.8 0.8 3.3e-23 81.3 0.5 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|385776067|ref|YP_005648635.1| - 7.2e-05 22.5 0.0 0.00016 21.3 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2811 PF10929.3 gi|385776067|ref|YP_005648635.1| - 0.0013 18.7 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2811) DUF3877 PF12993.2 gi|385776067|ref|YP_005648635.1| - 0.0052 16.3 0.4 0.0079 15.7 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function, E. rectale Gene description (DUF3877) RHH_3 PF12651.2 gi|385776067|ref|YP_005648635.1| - 0.008 15.8 0.5 0.023 14.4 0.1 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix domain YscJ_FliF PF01514.12 gi|385776067|ref|YP_005648635.1| - 0.1 11.7 0.0 3.3 6.8 0.0 2.2 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family Urm1 PF09138.6 gi|385776067|ref|YP_005648635.1| - 0.11 12.6 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) B3_4 PF03483.12 gi|385776068|ref|YP_005648636.1| - 2.2e-31 108.6 0.0 3.5e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain Homoserine_dh PF00742.14 gi|385776069|ref|YP_005648637.1| - 1.2e-50 171.6 0.0 1.6e-50 171.2 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|385776069|ref|YP_005648637.1| - 7e-12 45.7 0.0 1.5e-11 44.6 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain UbiA PF01040.13 gi|385776070|ref|YP_005648638.1| - 1.3e-22 80.2 28.0 1.6e-22 79.9 19.4 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2273 PF10031.4 gi|385776070|ref|YP_005648638.1| - 0.0011 18.4 4.3 0.0011 18.4 3.0 4.9 5 1 0 5 5 5 2 Small integral membrane protein (DUF2273) G0-G1_switch_2 PF15103.1 gi|385776070|ref|YP_005648638.1| - 0.29 11.3 1.4 0.36 11.0 0.1 1.8 2 0 0 2 2 2 0 G0/G1 switch protein 2 ECH PF00378.15 gi|385776072|ref|YP_005648640.1| - 7.6e-68 228.2 0.0 8.2e-68 228.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|385776072|ref|YP_005648640.1| - 0.0097 14.7 0.0 0.26 10.0 0.0 2.1 2 0 0 2 2 2 2 Serine dehydrogenase proteinase DUF496 PF04363.7 gi|385776072|ref|YP_005648640.1| - 0.065 13.0 0.1 0.84 9.4 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF496) Radical_SAM PF04055.16 gi|385776073|ref|YP_005648641.1| - 1.8e-19 70.5 0.2 2.6e-18 66.7 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385776073|ref|YP_005648641.1| - 0.0011 19.1 0.0 0.0028 17.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|385776073|ref|YP_005648641.1| - 0.0016 17.6 0.7 0.0016 17.6 0.5 2.6 3 1 0 3 3 3 1 zinc-ribbon domain UPF0547 PF10571.4 gi|385776073|ref|YP_005648641.1| - 0.01 15.5 0.0 0.027 14.1 0.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|385776073|ref|YP_005648641.1| - 0.038 13.8 0.0 0.038 13.8 0.0 2.8 3 0 0 3 3 3 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|385776073|ref|YP_005648641.1| - 0.29 10.5 6.2 0.32 10.3 1.5 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.6 gi|385776073|ref|YP_005648641.1| - 0.73 9.7 3.7 2.3 8.1 0.1 2.8 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Adenosine_kin PF04008.9 gi|385776074|ref|YP_005648642.1| - 3.4e-79 263.7 0.3 3.9e-79 263.5 0.2 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Y_Y_Y PF07495.8 gi|385776075|ref|YP_005648643.1| - 0.17 11.6 4.2 7.7 6.3 0.4 2.9 3 1 0 3 3 3 0 Y_Y_Y domain Lipocalin_4 PF13648.1 gi|385776075|ref|YP_005648643.1| - 1.2 9.7 5.1 3.5 8.2 0.9 2.0 1 1 1 2 2 2 0 Lipocalin-like domain VIT1 PF01988.14 gi|385776076|ref|YP_005648644.1| - 4e-12 46.0 17.8 2.9e-11 43.2 12.3 1.9 1 1 0 1 1 1 1 VIT family RestrictionSfiI PF11487.3 gi|385776076|ref|YP_005648644.1| - 0.089 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II restriction enzyme SfiI DUF3969 PF13108.1 gi|385776076|ref|YP_005648644.1| - 0.37 10.4 2.8 0.17 11.5 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3969) MgtE PF01769.11 gi|385776076|ref|YP_005648644.1| - 1.1 9.4 13.7 0.13 12.5 0.7 2.7 1 1 2 3 3 3 0 Divalent cation transporter Cupin_2 PF07883.6 gi|385776077|ref|YP_005648645.1| - 1.7e-15 56.2 0.1 2.3e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|385776077|ref|YP_005648645.1| - 7.6e-12 44.8 0.0 1.2e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|385776077|ref|YP_005648645.1| - 2.2e-08 33.8 0.0 3.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|385776077|ref|YP_005648645.1| - 0.00057 19.8 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Mif2/CENP-C like ARD PF03079.9 gi|385776077|ref|YP_005648645.1| - 0.0023 17.8 1.2 0.0034 17.3 0.1 1.7 2 0 0 2 2 2 1 ARD/ARD' family Auxin_BP PF02041.11 gi|385776077|ref|YP_005648645.1| - 0.0041 16.5 0.1 0.011 15.2 0.1 1.7 1 1 0 1 1 1 1 Auxin binding protein GPI PF06560.6 gi|385776077|ref|YP_005648645.1| - 0.0082 15.1 0.1 0.018 14.0 0.1 1.5 1 1 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) 3HCDH_N PF02737.13 gi|385776078|ref|YP_005648646.1| - 1.1e-48 165.2 0.0 1.6e-48 164.7 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|385776078|ref|YP_005648646.1| - 5.8e-18 65.0 0.1 1.4e-17 63.8 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|385776078|ref|YP_005648646.1| - 8.8e-06 25.6 0.2 0.00012 21.9 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|385776078|ref|YP_005648646.1| - 0.0015 18.3 0.0 0.0029 17.3 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|385776078|ref|YP_005648646.1| - 0.0097 16.1 0.2 0.025 14.8 0.0 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|385776078|ref|YP_005648646.1| - 0.011 16.0 0.1 0.036 14.4 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|385776078|ref|YP_005648646.1| - 0.016 14.6 0.2 0.033 13.6 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|385776078|ref|YP_005648646.1| - 0.017 14.5 0.3 0.035 13.4 0.2 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|385776078|ref|YP_005648646.1| - 0.066 13.0 0.1 0.089 12.6 0.0 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385776078|ref|YP_005648646.1| - 0.1 11.4 0.2 0.16 10.8 0.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Translin PF01997.11 gi|385776079|ref|YP_005648647.1| - 3.4e-23 82.2 0.6 5.6e-23 81.5 0.4 1.3 1 0 0 1 1 1 1 Translin family PRD_Mga PF08270.6 gi|385776079|ref|YP_005648647.1| - 0.053 12.7 0.2 0.52 9.5 0.1 2.2 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) PRD domain TPR_11 PF13414.1 gi|385776079|ref|YP_005648647.1| - 0.13 11.9 0.3 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 TPR repeat RimK PF08443.6 gi|385776080|ref|YP_005648648.1| - 3.6e-45 153.7 0.1 3e-44 150.7 0.0 1.9 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|385776080|ref|YP_005648648.1| - 1.3e-10 40.7 0.1 2.6e-10 39.6 0.0 1.5 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385776080|ref|YP_005648648.1| - 1.1e-09 37.5 0.0 1.5e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|385776080|ref|YP_005648648.1| - 2.1e-09 37.4 0.0 3.8e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385776080|ref|YP_005648648.1| - 2.3e-07 30.7 0.0 3.3e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|385776080|ref|YP_005648648.1| - 0.0058 15.9 0.0 0.038 13.3 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|385776080|ref|YP_005648648.1| - 0.017 14.5 0.0 1.6 8.0 0.0 2.3 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|385776080|ref|YP_005648648.1| - 0.017 14.4 0.0 0.029 13.6 0.0 1.6 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|385776080|ref|YP_005648648.1| - 0.017 14.3 0.0 0.04 13.1 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain TTL PF03133.10 gi|385776080|ref|YP_005648648.1| - 0.11 11.4 0.1 0.16 10.8 0.1 1.3 1 0 0 1 1 1 0 Tubulin-tyrosine ligase family CPSase_L_D2 PF02786.12 gi|385776081|ref|YP_005648649.1| - 3.8e-96 320.4 0.0 4.6e-65 218.8 0.0 2.5 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.14 gi|385776081|ref|YP_005648649.1| - 1.2e-37 128.4 0.4 3.4e-37 126.9 0.3 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPSase_L_chain PF00289.17 gi|385776081|ref|YP_005648649.1| - 5.8e-36 122.9 0.0 3.2e-19 69.0 0.0 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|385776081|ref|YP_005648649.1| - 1.2e-32 113.1 0.0 1.1e-17 64.3 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385776081|ref|YP_005648649.1| - 5.7e-24 84.4 0.0 1.7e-12 46.7 0.0 4.1 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|385776081|ref|YP_005648649.1| - 7.5e-18 64.4 0.0 3.3e-09 36.3 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|385776081|ref|YP_005648649.1| - 8e-13 48.2 0.5 6.8e-07 28.8 0.0 2.8 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|385776081|ref|YP_005648649.1| - 2.1e-08 34.2 1.2 0.00013 21.8 0.1 3.0 2 1 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|385776081|ref|YP_005648649.1| - 9.1e-08 31.7 0.0 0.00012 21.6 0.0 2.9 2 0 0 2 2 2 2 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|385776081|ref|YP_005648649.1| - 4.6e-07 29.5 0.1 0.00013 21.5 0.0 2.8 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|385776081|ref|YP_005648649.1| - 0.00036 19.8 0.1 0.52 9.4 0.0 3.5 2 1 1 3 3 3 2 ATP-grasp domain MGS PF02142.17 gi|385776081|ref|YP_005648649.1| - 0.0011 18.8 0.3 1.9 8.4 0.0 3.8 3 1 1 4 4 4 1 MGS-like domain ATP-grasp_2 PF08442.5 gi|385776081|ref|YP_005648649.1| - 0.0029 17.0 0.0 0.8 9.0 0.0 3.0 3 0 0 3 3 3 1 ATP-grasp domain HTH_23 PF13384.1 gi|385776081|ref|YP_005648649.1| - 0.0094 15.5 0.0 0.13 11.9 0.0 2.7 2 0 0 2 2 2 1 Homeodomain-like domain Octopine_DH PF02317.12 gi|385776081|ref|YP_005648649.1| - 0.028 14.0 0.0 0.061 12.9 0.0 1.5 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain CPSase_sm_chain PF00988.17 gi|385776082|ref|YP_005648650.1| - 1.4e-48 163.7 0.1 2.1e-48 163.1 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|385776082|ref|YP_005648650.1| - 8.3e-42 142.8 0.0 1.2e-41 142.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385776082|ref|YP_005648650.1| - 3.6e-06 26.5 0.1 0.00047 19.6 0.1 2.2 1 1 1 2 2 2 2 Peptidase C26 Lyase_1 PF00206.15 gi|385776083|ref|YP_005648651.1| - 1.3e-46 159.2 0.1 1.9e-46 158.6 0.1 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|385776083|ref|YP_005648651.1| - 0.042 13.9 0.0 0.28 11.2 0.0 2.4 3 0 0 3 3 3 0 Argininosuccinate lyase C-terminal DUF769 PF05590.6 gi|385776083|ref|YP_005648651.1| - 0.055 12.6 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Xylella fastidiosa protein of unknown function (DUF769) Arginosuc_synth PF00764.14 gi|385776084|ref|YP_005648652.1| - 5.1e-146 486.6 0.2 5.8e-146 486.4 0.2 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|385776084|ref|YP_005648652.1| - 5.1e-05 22.6 0.1 0.00046 19.5 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|385776084|ref|YP_005648652.1| - 0.045 12.3 0.1 0.08 11.4 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase RHH_1 PF01402.16 gi|385776085|ref|YP_005648653.1| - 2.2e-06 27.3 0.1 2.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Herpes_env PF01673.13 gi|385776086|ref|YP_005648654.1| - 0.0024 16.4 0.0 0.0024 16.4 0.0 1.1 1 0 0 1 1 1 1 Herpesvirus putative major envelope glycoprotein PapB PF03333.8 gi|385776086|ref|YP_005648654.1| - 0.0077 16.0 0.1 0.044 13.5 0.0 2.0 2 0 0 2 2 2 1 Adhesin biosynthesis transcription regulatory protein DUF3505 PF12013.3 gi|385776086|ref|YP_005648654.1| - 0.027 14.7 0.2 0.041 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3505) DUF4423 PF14394.1 gi|385776086|ref|YP_005648654.1| - 0.046 13.2 0.1 0.082 12.4 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) AIRS_C PF02769.17 gi|385776087|ref|YP_005648655.1| - 5.3e-23 81.7 0.0 1.4e-22 80.3 0.0 1.7 2 1 1 3 3 3 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|385776087|ref|YP_005648655.1| - 3.3e-16 59.3 0.9 6.2e-16 58.4 0.6 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GARS_A PF01071.14 gi|385776088|ref|YP_005648656.1| - 1.6e-43 148.5 0.0 2.8e-43 147.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|385776088|ref|YP_005648656.1| - 2.9e-24 85.4 0.0 5.5e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|385776088|ref|YP_005648656.1| - 2.1e-13 50.2 0.0 4.3e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|385776088|ref|YP_005648656.1| - 1.4e-08 34.7 0.0 2.3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385776088|ref|YP_005648656.1| - 0.00016 20.5 0.0 0.00024 19.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|385776088|ref|YP_005648656.1| - 0.0012 18.1 0.0 0.0031 16.8 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1662 PF07878.6 gi|385776088|ref|YP_005648656.1| - 0.099 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1662) Pribosyltran PF00156.22 gi|385776089|ref|YP_005648657.1| - 8.2e-18 64.3 0.6 2.7e-17 62.6 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|385776089|ref|YP_005648657.1| - 0.0014 17.9 0.0 0.0035 16.6 0.0 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase GATase_7 PF13537.1 gi|385776089|ref|YP_005648657.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|385776090|ref|YP_005648658.1| - 2.3e-14 53.1 0.1 4.7e-14 52.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.16 gi|385776090|ref|YP_005648658.1| - 5.1e-13 48.4 0.0 2.8e-06 26.2 0.0 3.2 2 1 1 3 3 3 3 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|385776090|ref|YP_005648658.1| - 1.1e-11 44.8 0.0 2.5e-11 43.6 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|385776090|ref|YP_005648658.1| - 3e-10 39.9 0.0 1.7e-09 37.4 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase domain PRTase_2 PF15609.1 gi|385776090|ref|YP_005648658.1| - 0.037 13.3 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase PRTase_3 PF15610.1 gi|385776090|ref|YP_005648658.1| - 0.13 11.1 0.2 0.53 9.1 0.0 2.0 2 0 0 2 2 2 0 PRTase ComF-like DGF-1_5 PF11038.3 gi|385776090|ref|YP_005648658.1| - 0.22 10.7 0.0 0.34 10.0 0.0 1.2 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 5 AIRS_C PF02769.17 gi|385776091|ref|YP_005648659.1| - 6.1e-41 139.9 1.0 2.7e-26 92.4 0.5 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|385776091|ref|YP_005648659.1| - 6.9e-38 128.7 3.2 3.4e-25 88.1 0.2 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain GATase_5 PF13507.1 gi|385776092|ref|YP_005648660.1| - 6.2e-44 149.8 0.0 7.8e-44 149.5 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|385776092|ref|YP_005648660.1| - 1e-09 38.0 0.0 1.4e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|385776092|ref|YP_005648660.1| - 2.9e-08 33.4 0.1 6.7e-08 32.2 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|385776092|ref|YP_005648660.1| - 2.3e-07 30.4 0.0 3.2e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DUF4066 PF13278.1 gi|385776092|ref|YP_005648660.1| - 9.7e-05 21.6 0.0 0.00019 20.7 0.0 1.4 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|385776092|ref|YP_005648660.1| - 0.012 15.0 0.2 0.048 13.1 0.1 1.9 1 1 0 1 1 1 0 Peptidase C26 PurS PF02700.9 gi|385776093|ref|YP_005648661.1| - 3.6e-20 71.7 1.3 4.1e-20 71.5 0.9 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2153 PF09921.4 gi|385776093|ref|YP_005648661.1| - 0.017 14.7 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2153) SAC3 PF12209.3 gi|385776093|ref|YP_005648661.1| - 0.023 14.7 0.3 0.029 14.4 0.2 1.2 1 0 0 1 1 1 0 Leucine permease transcriptional regulator helical domain DUF1462 PF07315.6 gi|385776093|ref|YP_005648661.1| - 0.036 14.0 0.4 0.05 13.5 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1462) SSV1_ORF_D-335 PF07935.6 gi|385776093|ref|YP_005648661.1| - 3.9 7.2 5.8 0.79 9.5 0.9 2.0 1 1 1 2 2 2 0 ORF D-335-like protein SAICAR_synt PF01259.13 gi|385776094|ref|YP_005648662.1| - 5.1e-52 176.4 1.0 5.6e-52 176.3 0.7 1.0 1 0 0 1 1 1 1 SAICAR synthetase tRNA_bind PF01588.15 gi|385776095|ref|YP_005648663.1| - 5.8e-26 90.1 0.0 6.9e-26 89.9 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain MMR_HSR1 PF01926.18 gi|385776096|ref|YP_005648664.1| - 1.2e-19 70.3 0.7 2.6e-19 69.3 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|385776096|ref|YP_005648664.1| - 8.3e-15 54.4 0.3 1.6e-14 53.5 0.2 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|385776096|ref|YP_005648664.1| - 2.5e-14 52.8 0.0 4.2e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|385776096|ref|YP_005648664.1| - 3.5e-07 29.8 0.3 0.00021 20.7 0.2 3.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|385776096|ref|YP_005648664.1| - 5.3e-06 26.9 0.1 6.3e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 Miro-like protein PduV-EutP PF10662.4 gi|385776096|ref|YP_005648664.1| - 3.1e-05 23.4 0.2 0.00028 20.3 0.0 2.6 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|385776096|ref|YP_005648664.1| - 5.3e-05 22.5 0.2 5.3e-05 22.5 0.1 1.9 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|385776096|ref|YP_005648664.1| - 5.5e-05 22.3 0.3 0.0001 21.4 0.1 1.5 2 0 0 2 2 2 1 AIG1 family Ras PF00071.17 gi|385776096|ref|YP_005648664.1| - 0.00019 20.8 0.1 0.00059 19.2 0.0 1.8 2 0 0 2 2 2 1 Ras family AAA_17 PF13207.1 gi|385776096|ref|YP_005648664.1| - 0.0005 20.8 0.1 0.002 18.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|385776096|ref|YP_005648664.1| - 0.0028 17.3 0.4 0.024 14.3 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|385776096|ref|YP_005648664.1| - 0.0066 16.1 0.2 0.026 14.2 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA_18 PF13238.1 gi|385776096|ref|YP_005648664.1| - 0.013 15.8 0.9 0.038 14.3 0.0 2.4 2 2 1 3 3 3 0 AAA domain DUF258 PF03193.11 gi|385776096|ref|YP_005648664.1| - 0.02 14.1 0.2 0.16 11.1 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|385776096|ref|YP_005648664.1| - 0.021 14.6 4.8 0.083 12.7 0.1 2.6 2 2 0 3 3 3 0 Dynamin family DUF327 PF03885.8 gi|385776096|ref|YP_005648664.1| - 0.034 13.9 4.5 0.61 9.9 0.1 3.2 2 2 1 3 3 3 0 Protein of unknown function (DUF327) AAA_25 PF13481.1 gi|385776096|ref|YP_005648664.1| - 0.038 13.3 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|385776096|ref|YP_005648664.1| - 0.047 13.6 0.2 0.86 9.5 0.0 2.6 2 1 1 3 3 3 0 AAA ATPase domain AAA_14 PF13173.1 gi|385776096|ref|YP_005648664.1| - 0.067 13.0 0.0 0.21 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain Ribosomal_L22 PF00237.14 gi|385776096|ref|YP_005648664.1| - 0.093 12.6 0.4 0.22 11.4 0.3 1.6 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e Arch_ATPase PF01637.13 gi|385776096|ref|YP_005648664.1| - 0.12 12.0 5.6 0.048 13.3 0.2 2.9 1 1 0 2 2 2 0 Archaeal ATPase DUF310 PF03750.8 gi|385776096|ref|YP_005648664.1| - 0.34 11.1 3.5 11 6.2 0.1 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF310) CbiA PF01656.18 gi|385776096|ref|YP_005648664.1| - 0.57 9.5 3.9 0.52 9.6 0.2 2.2 1 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_14 PF13394.1 gi|385776097|ref|YP_005648665.1| - 3.1e-19 69.1 0.0 5.7e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|385776097|ref|YP_005648665.1| - 1.3e-16 61.1 0.1 2.9e-16 60.0 0.1 1.6 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385776097|ref|YP_005648665.1| - 1.8e-10 41.0 0.1 3.6e-10 40.1 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain HTH_5 PF01022.15 gi|385776099|ref|YP_005648667.1| - 2.1e-10 40.0 0.1 3e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|385776099|ref|YP_005648667.1| - 8.5e-06 25.4 0.0 1.7e-05 24.5 0.0 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385776099|ref|YP_005648667.1| - 0.00027 20.2 0.5 0.00043 19.6 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|385776099|ref|YP_005648667.1| - 0.00061 19.4 0.1 0.0011 18.6 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|385776099|ref|YP_005648667.1| - 0.0017 18.1 0.7 0.0024 17.6 0.5 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_40 PF14493.1 gi|385776099|ref|YP_005648667.1| - 0.048 13.8 0.0 0.066 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain IL2 PF00715.12 gi|385776100|ref|YP_005648668.1| - 0.039 13.6 1.9 0.091 12.4 0.3 2.1 1 1 1 2 2 2 0 Interleukin 2 POTRA_1 PF08478.5 gi|385776100|ref|YP_005648668.1| - 0.11 12.6 0.8 0.46 10.5 0.5 2.1 1 1 0 1 1 1 0 POTRA domain, FtsQ-type PhoU PF01895.14 gi|385776101|ref|YP_005648669.1| - 4.1e-22 78.4 10.0 3.6e-16 59.3 0.6 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|385776101|ref|YP_005648669.1| - 1.6e-11 43.6 0.0 3.3e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Prok-JAB PF14464.1 gi|385776102|ref|YP_005648670.1| - 0.047 13.2 0.1 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain OMPdecase PF00215.19 gi|385776103|ref|YP_005648671.1| - 9e-24 84.1 0.0 1.1e-23 83.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.22 gi|385776104|ref|YP_005648672.1| - 1e-14 54.3 0.8 2.5e-14 53.0 0.6 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385776104|ref|YP_005648672.1| - 0.08 12.1 0.0 0.093 11.9 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase OTCace_N PF02729.16 gi|385776105|ref|YP_005648673.1| - 6.1e-42 142.6 0.0 1.2e-41 141.7 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|385776105|ref|YP_005648673.1| - 3.6e-31 108.1 0.0 6.5e-30 104.0 0.0 2.2 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|385776106|ref|YP_005648674.1| - 5.6e-36 122.4 2.1 9e-36 121.8 1.4 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|385776106|ref|YP_005648674.1| - 3.7e-17 61.4 3.5 6e-17 60.8 2.4 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-U1 PF06220.7 gi|385776106|ref|YP_005648674.1| - 0.068 12.7 0.2 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 U1 zinc finger DHODB_Fe-S_bind PF10418.4 gi|385776107|ref|YP_005648675.1| - 3.3e-06 26.4 5.0 4.8e-06 25.9 2.6 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2 PF00111.22 gi|385776107|ref|YP_005648675.1| - 0.1 12.3 0.4 0.2 11.4 0.3 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Amidohydro_1 PF01979.15 gi|385776108|ref|YP_005648676.1| - 2.4e-13 50.4 0.0 1.4e-07 31.5 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385776108|ref|YP_005648676.1| - 6.6e-11 42.7 0.0 4.3e-06 26.9 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|385776108|ref|YP_005648676.1| - 1.6e-06 27.8 0.0 3.4e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385776108|ref|YP_005648676.1| - 0.086 12.0 0.0 3 6.9 0.0 2.3 2 1 0 2 2 2 0 Amidohydrolase family DHO_dh PF01180.16 gi|385776109|ref|YP_005648677.1| - 2.1e-45 154.9 2.3 2.9e-45 154.4 1.6 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|385776109|ref|YP_005648677.1| - 0.0011 17.8 0.1 0.0056 15.5 0.0 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NeuB PF03102.9 gi|385776109|ref|YP_005648677.1| - 0.027 13.6 0.2 0.15 11.1 0.1 1.9 2 0 0 2 2 2 0 NeuB family FMN_dh PF01070.13 gi|385776109|ref|YP_005648677.1| - 0.029 13.2 1.7 0.069 11.9 0.3 1.9 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|385776109|ref|YP_005648677.1| - 0.033 13.0 0.3 0.11 11.3 0.1 1.7 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|385776109|ref|YP_005648677.1| - 0.068 12.4 0.9 0.85 8.8 0.0 2.4 2 1 0 2 2 2 0 Histidine biosynthesis protein NMO PF03060.10 gi|385776109|ref|YP_005648677.1| - 0.18 10.9 1.8 0.26 10.4 0.4 1.8 2 0 0 2 2 2 0 Nitronate monooxygenase SspH PF08141.7 gi|385776110|ref|YP_005648678.1| - 0.03 14.3 1.4 0.046 13.7 0.1 1.8 2 0 0 2 2 2 0 Small acid-soluble spore protein H family RPN7 PF10602.4 gi|385776111|ref|YP_005648679.1| - 0.0012 18.2 2.4 0.0015 17.9 1.7 1.0 1 0 0 1 1 1 1 26S proteasome subunit RPN7 DUF677 PF05055.7 gi|385776111|ref|YP_005648679.1| - 0.0033 16.1 0.8 0.0044 15.7 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF677) RmuC PF02646.11 gi|385776111|ref|YP_005648679.1| - 0.052 12.3 0.9 0.056 12.2 0.7 1.3 1 0 0 1 1 1 0 RmuC family DUF2342 PF10103.4 gi|385776111|ref|YP_005648679.1| - 0.064 12.2 0.3 0.08 11.8 0.1 1.3 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2342) DUF812 PF05667.6 gi|385776111|ref|YP_005648679.1| - 0.096 11.1 5.8 0.12 10.8 4.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) V_ATPase_I PF01496.14 gi|385776111|ref|YP_005648679.1| - 0.096 10.5 2.1 0.09 10.6 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Phage_GP20 PF06810.6 gi|385776111|ref|YP_005648679.1| - 0.24 10.8 8.1 0.9 8.9 5.6 1.9 1 1 0 1 1 1 0 Phage minor structural protein GP20 Syntaxin PF00804.20 gi|385776111|ref|YP_005648679.1| - 0.38 10.9 7.5 0.69 10.0 4.9 1.7 1 1 0 1 1 1 0 Syntaxin COG5 PF10392.4 gi|385776111|ref|YP_005648679.1| - 0.43 10.5 5.7 0.83 9.6 4.0 1.6 1 1 0 1 1 1 0 Golgi transport complex subunit 5 BBP1_C PF15272.1 gi|385776111|ref|YP_005648679.1| - 0.44 10.0 8.9 0.091 12.2 0.8 2.1 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal DUF1664 PF07889.7 gi|385776111|ref|YP_005648679.1| - 0.52 10.1 4.1 0.22 11.3 1.3 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF904 PF06005.7 gi|385776111|ref|YP_005648679.1| - 0.62 10.4 9.8 0.98 9.7 1.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF904) DivIC PF04977.10 gi|385776111|ref|YP_005648679.1| - 0.68 9.4 8.6 1.2 8.7 0.1 2.6 2 1 1 3 3 3 0 Septum formation initiator NPV_P10 PF05531.7 gi|385776111|ref|YP_005648679.1| - 0.8 9.9 6.0 3.1 8.1 1.7 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|385776111|ref|YP_005648679.1| - 1.5 8.8 6.6 3.7 7.6 0.7 2.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain IncA PF04156.9 gi|385776111|ref|YP_005648679.1| - 1.7 8.2 9.4 2.7 7.5 6.5 1.3 1 1 0 1 1 1 0 IncA protein MarC PF01914.12 gi|385776112|ref|YP_005648680.1| - 5.8e-36 123.5 18.8 6.8e-36 123.2 13.0 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF3693 PF12472.3 gi|385776112|ref|YP_005648680.1| - 0.076 12.6 0.1 0.94 9.1 0.0 2.4 2 0 0 2 2 2 0 Phage related protein AsnC_trans_reg PF01037.16 gi|385776113|ref|YP_005648681.1| - 3.3e-18 65.1 0.4 5.9e-18 64.3 0.3 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|385776113|ref|YP_005648681.1| - 1.7e-12 46.5 2.7 4.3e-12 45.2 0.2 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385776113|ref|YP_005648681.1| - 5.7e-12 44.9 3.8 9.3e-12 44.2 2.3 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|385776113|ref|YP_005648681.1| - 6.5e-07 28.9 0.3 1.1e-06 28.1 0.2 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|385776113|ref|YP_005648681.1| - 0.0012 18.9 0.0 0.0032 17.5 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|385776113|ref|YP_005648681.1| - 0.0013 18.3 0.1 0.0027 17.2 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.7 gi|385776113|ref|YP_005648681.1| - 0.0032 16.9 0.0 0.0063 16.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.17 gi|385776113|ref|YP_005648681.1| - 0.0034 17.0 0.6 0.0062 16.2 0.1 1.6 2 0 0 2 2 1 1 MarR family HTH_23 PF13384.1 gi|385776113|ref|YP_005648681.1| - 0.0044 16.6 0.0 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|385776113|ref|YP_005648681.1| - 0.0046 17.2 0.2 0.014 15.7 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|385776113|ref|YP_005648681.1| - 0.0071 16.1 0.4 0.012 15.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385776113|ref|YP_005648681.1| - 0.0096 15.8 0.1 0.025 14.5 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|385776113|ref|YP_005648681.1| - 0.015 14.9 0.3 0.024 14.2 0.2 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TetR_N PF00440.18 gi|385776113|ref|YP_005648681.1| - 0.015 14.9 0.0 0.041 13.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|385776113|ref|YP_005648681.1| - 0.022 14.3 0.1 0.054 13.0 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain TetR_C_9 PF14514.1 gi|385776113|ref|YP_005648681.1| - 0.027 14.3 0.1 0.045 13.5 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator, TetR, C-terminal Sulfolobus_pRN PF05584.6 gi|385776113|ref|YP_005648681.1| - 0.051 13.5 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein GntR PF00392.16 gi|385776113|ref|YP_005648681.1| - 0.054 12.9 0.2 0.084 12.3 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_psq PF05225.11 gi|385776113|ref|YP_005648681.1| - 0.056 13.0 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain mRNA_stabil PF13929.1 gi|385776113|ref|YP_005648681.1| - 0.058 12.3 0.2 0.072 12.0 0.1 1.1 1 0 0 1 1 1 0 mRNA stabilisation HTH_30 PF13556.1 gi|385776113|ref|YP_005648681.1| - 0.059 12.9 0.4 0.11 12.1 0.2 1.5 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain EAP30 PF04157.11 gi|385776113|ref|YP_005648681.1| - 0.084 12.0 0.0 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_7 PF02796.10 gi|385776113|ref|YP_005648681.1| - 0.11 12.4 0.1 4.3 7.2 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_Tnp_Tc3_2 PF01498.13 gi|385776113|ref|YP_005648681.1| - 0.21 11.6 2.1 0.41 10.7 0.4 2.1 2 0 0 2 2 2 0 Transposase RNA_POL_M_15KD PF02150.11 gi|385776114|ref|YP_005648682.1| - 3e-09 36.3 2.6 4.1e-09 35.9 1.1 1.9 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.6 gi|385776114|ref|YP_005648682.1| - 2.2e-05 23.8 0.3 0.058 12.9 0.0 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.5 gi|385776114|ref|YP_005648682.1| - 9.6e-05 22.2 1.4 0.00015 21.6 0.9 1.4 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf-TFIIB PF13453.1 gi|385776114|ref|YP_005648682.1| - 0.00011 21.3 0.8 0.0002 20.5 0.6 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger Zn_ribbon_recom PF13408.1 gi|385776114|ref|YP_005648682.1| - 0.00023 21.3 4.5 0.053 13.7 0.4 2.2 1 1 1 2 2 2 2 Recombinase zinc beta ribbon domain IBR PF01485.16 gi|385776114|ref|YP_005648682.1| - 0.00058 19.6 0.1 0.001 18.8 0.1 1.4 1 0 0 1 1 1 1 IBR domain DZR PF12773.2 gi|385776114|ref|YP_005648682.1| - 0.0021 17.8 0.3 0.0038 17.0 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385776114|ref|YP_005648682.1| - 0.0048 16.3 4.9 0.91 9.1 1.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|385776114|ref|YP_005648682.1| - 0.0055 16.1 4.8 0.23 10.9 0.4 2.3 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger C1_1 PF00130.17 gi|385776114|ref|YP_005648682.1| - 0.0096 15.6 0.5 0.015 15.0 0.4 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.6 gi|385776114|ref|YP_005648682.1| - 0.015 14.9 1.0 0.015 14.9 0.7 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|385776114|ref|YP_005648682.1| - 0.016 15.0 1.0 1.8 8.4 0.0 2.3 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|385776114|ref|YP_005648682.1| - 0.025 13.7 6.9 0.19 10.9 4.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385776114|ref|YP_005648682.1| - 0.033 14.0 0.4 0.057 13.2 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C3HC PF07967.8 gi|385776114|ref|YP_005648682.1| - 0.035 13.8 0.3 0.042 13.6 0.2 1.2 1 0 0 1 1 1 0 C3HC zinc finger-like Nudix_N_2 PF14803.1 gi|385776114|ref|YP_005648682.1| - 0.047 13.3 3.3 0.77 9.4 2.8 2.1 1 1 1 2 2 2 0 Nudix N-terminal UPF0547 PF10571.4 gi|385776114|ref|YP_005648682.1| - 0.055 13.1 3.2 3.9 7.2 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RecR PF02132.10 gi|385776114|ref|YP_005648682.1| - 0.11 11.9 0.4 8.4 5.9 0.0 2.8 3 0 0 3 3 3 0 RecR protein GFA PF04828.9 gi|385776114|ref|YP_005648682.1| - 0.11 12.4 1.4 6.5 6.7 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.1 gi|385776114|ref|YP_005648682.1| - 0.11 12.8 0.9 0.26 11.6 0.7 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|385776114|ref|YP_005648682.1| - 0.2 11.7 3.2 2.3 8.3 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-tcix PF14952.1 gi|385776114|ref|YP_005648682.1| - 0.21 10.9 3.9 4.8 6.5 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ogr_Delta PF04606.7 gi|385776114|ref|YP_005648682.1| - 0.24 11.0 3.6 6.2 6.5 0.0 2.5 3 0 0 3 3 2 0 Ogr/Delta-like zinc finger YhfH PF14149.1 gi|385776114|ref|YP_005648682.1| - 0.35 10.7 3.2 10 6.0 0.2 2.5 2 0 0 2 2 2 0 YhfH-like protein PhnA_Zn_Ribbon PF08274.7 gi|385776114|ref|YP_005648682.1| - 0.37 10.6 2.3 5.4 6.8 1.5 2.2 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF2072 PF09845.4 gi|385776114|ref|YP_005648682.1| - 0.38 10.6 8.1 8.4 6.3 6.2 2.1 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Auto_anti-p27 PF06677.7 gi|385776114|ref|YP_005648682.1| - 0.57 9.9 5.6 11 5.9 4.3 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L33 PF00471.15 gi|385776114|ref|YP_005648682.1| - 0.73 10.1 5.9 0.77 10.0 0.1 2.5 2 1 0 2 2 2 0 Ribosomal protein L33 A2L_zn_ribbon PF08792.5 gi|385776114|ref|YP_005648682.1| - 0.97 8.9 4.5 6 6.4 0.3 2.3 1 1 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|385776114|ref|YP_005648682.1| - 1 9.1 4.1 2.1 8.1 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain FYDLN_acid PF09538.5 gi|385776114|ref|YP_005648682.1| - 1.1 9.8 6.8 5.3 7.6 4.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn-ribbon_8 PF09723.5 gi|385776114|ref|YP_005648682.1| - 1.8 8.6 4.7 15 5.6 0.3 2.3 1 1 0 2 2 2 0 Zinc ribbon domain DUF1936 PF09151.5 gi|385776114|ref|YP_005648682.1| - 2.4 7.7 5.9 6 6.4 4.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) zf-IS66 PF13005.2 gi|385776114|ref|YP_005648682.1| - 3.2 7.7 8.3 0.97 9.4 0.1 3.0 2 2 2 4 4 4 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_5 PF13719.1 gi|385776114|ref|YP_005648682.1| - 6.9 6.3 7.1 8.5 6.0 2.2 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.16 gi|385776116|ref|YP_005648684.1| - 1.4e-16 61.0 0.1 3.4e-16 59.8 0.1 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|385776116|ref|YP_005648684.1| - 0.076 12.8 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 B12 binding domain tRNA-synt_2b PF00587.20 gi|385776117|ref|YP_005648685.1| - 9.2e-38 129.5 0.0 1.6e-37 128.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|385776117|ref|YP_005648685.1| - 2e-22 79.2 13.0 7.7e-22 77.3 8.0 2.4 3 0 0 3 3 3 1 Seryl-tRNA synthetase N-terminal domain ALIX_LYPXL_bnd PF13949.1 gi|385776117|ref|YP_005648685.1| - 0.00029 19.8 6.7 0.0005 19.1 4.7 1.3 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV FYRC PF05965.9 gi|385776117|ref|YP_005648685.1| - 0.02 14.7 0.1 0.18 11.6 0.0 2.3 2 0 0 2 2 2 0 F/Y rich C-terminus Ribosomal_S4 PF00163.14 gi|385776117|ref|YP_005648685.1| - 0.029 14.7 1.1 0.058 13.7 0.8 1.5 1 0 0 1 1 1 0 Ribosomal protein S4/S9 N-terminal domain APG6 PF04111.7 gi|385776117|ref|YP_005648685.1| - 0.042 12.8 8.2 0.78 8.7 4.7 2.6 3 0 0 3 3 3 0 Autophagy protein Apg6 DUF2122 PF09895.4 gi|385776117|ref|YP_005648685.1| - 0.048 13.8 1.2 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 RecB-family nuclease (DUF2122) Spectrin PF00435.16 gi|385776117|ref|YP_005648685.1| - 0.49 10.7 7.2 0.47 10.7 1.9 2.4 1 1 1 2 2 2 0 Spectrin repeat IncA PF04156.9 gi|385776117|ref|YP_005648685.1| - 1.1 8.8 7.6 1.7 8.2 5.3 1.2 1 0 0 1 1 1 0 IncA protein DUF59 PF01883.14 gi|385776118|ref|YP_005648686.1| - 3.9e-19 68.3 0.1 6.9e-19 67.6 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF59 YqhG PF11079.3 gi|385776118|ref|YP_005648686.1| - 0.0093 14.8 0.0 0.049 12.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial protein YqhG of unknown function PRA-CH PF01502.13 gi|385776119|ref|YP_005648687.1| - 1.4e-31 107.9 0.0 1.9e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase DUF2760 PF10816.3 gi|385776119|ref|YP_005648687.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2760) GATase PF00117.23 gi|385776120|ref|YP_005648688.1| - 1.2e-30 106.4 0.0 1.4e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|385776120|ref|YP_005648688.1| - 0.0003 20.4 0.0 0.0014 18.1 0.0 1.8 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|385776120|ref|YP_005648688.1| - 0.0069 16.0 0.0 0.35 10.4 0.0 2.0 2 0 0 2 2 2 1 SNO glutamine amidotransferase family GATase_5 PF13507.1 gi|385776120|ref|YP_005648688.1| - 0.062 12.1 0.1 0.15 10.9 0.1 1.7 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PRA-PH PF01503.12 gi|385776121|ref|YP_005648689.1| - 3e-15 56.2 0.1 3.4e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Histidinol_dh PF00815.15 gi|385776122|ref|YP_005648690.1| - 1.2e-123 412.8 4.7 4.3e-123 410.9 3.3 1.7 1 1 0 1 1 1 1 Histidinol dehydrogenase DUF945 PF06097.6 gi|385776122|ref|YP_005648690.1| - 0.031 13.0 0.1 0.049 12.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) His_biosynth PF00977.16 gi|385776123|ref|YP_005648691.1| - 4.8e-82 274.6 4.7 5.5e-82 274.4 3.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|385776123|ref|YP_005648691.1| - 5.4e-07 28.9 0.5 0.0014 17.7 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|385776123|ref|YP_005648691.1| - 9.1e-06 25.0 2.4 0.0089 15.2 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.12 gi|385776123|ref|YP_005648691.1| - 2.2e-05 23.4 0.0 0.024 13.4 0.0 2.2 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|385776123|ref|YP_005648691.1| - 2.7e-05 23.3 0.3 0.039 13.0 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|385776123|ref|YP_005648691.1| - 0.0011 18.2 0.5 0.0044 16.2 0.1 1.9 2 0 0 2 2 2 1 PcrB family DHO_dh PF01180.16 gi|385776123|ref|YP_005648691.1| - 0.0041 16.1 0.9 0.13 11.1 0.1 2.3 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|385776123|ref|YP_005648691.1| - 0.0041 16.0 0.0 0.0068 15.3 0.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase G3P_antiterm PF04309.7 gi|385776123|ref|YP_005648691.1| - 0.012 14.6 0.3 0.34 9.9 0.0 2.3 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.20 gi|385776123|ref|YP_005648691.1| - 0.023 13.6 0.3 0.063 12.1 0.1 1.8 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|385776123|ref|YP_005648691.1| - 0.029 13.2 1.5 0.065 12.0 0.2 2.1 2 1 1 3 3 3 0 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|385776123|ref|YP_005648691.1| - 0.058 11.9 0.3 0.12 10.8 0.2 1.5 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IGPD PF00475.13 gi|385776124|ref|YP_005648692.1| - 6.1e-55 185.0 0.1 1e-54 184.3 0.1 1.3 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase TcdA_TcdB_pore PF12920.2 gi|385776124|ref|YP_005648692.1| - 0.033 12.1 0.3 0.044 11.6 0.0 1.3 2 0 0 2 2 2 0 TcdA/TcdB pore forming domain His_biosynth PF00977.16 gi|385776125|ref|YP_005648693.1| - 1.8e-51 174.6 3.3 2e-51 174.4 2.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|385776125|ref|YP_005648693.1| - 1.4e-06 27.7 3.1 0.0012 18.1 0.0 2.2 2 0 0 2 2 2 2 PcrB family HisG PF01634.13 gi|385776126|ref|YP_005648694.1| - 2.3e-54 183.3 0.8 3.1e-54 182.9 0.6 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|385776126|ref|YP_005648694.1| - 2.4e-22 78.6 0.9 9.1e-22 76.8 0.3 2.2 2 0 0 2 2 2 1 HisG, C-terminal domain Aminotran_1_2 PF00155.16 gi|385776127|ref|YP_005648695.1| - 1.3e-43 149.3 0.0 1.5e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II IGR PF09597.5 gi|385776128|ref|YP_005648696.1| - 0.018 14.9 0.1 0.42 10.5 0.0 2.4 2 0 0 2 2 2 0 IGR protein motif Phage_rep_org_N PF09681.5 gi|385776128|ref|YP_005648696.1| - 0.028 13.9 0.2 0.071 12.6 0.2 1.7 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Mrr_N PF14338.1 gi|385776128|ref|YP_005648696.1| - 0.1 12.6 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain tRNA-synt_1 PF00133.17 gi|385776129|ref|YP_005648697.1| - 3.9e-64 216.7 0.2 1.5e-63 214.7 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|385776129|ref|YP_005648697.1| - 5.4e-27 94.4 2.6 2.5e-13 49.4 0.0 3.7 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|385776129|ref|YP_005648697.1| - 4.5e-23 81.6 3.0 9.5e-23 80.6 1.7 2.0 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|385776129|ref|YP_005648697.1| - 1e-14 54.4 0.7 1.7e-08 33.9 0.0 2.8 3 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|385776129|ref|YP_005648697.1| - 2.6e-13 49.6 0.5 6.8e-13 48.3 0.0 1.9 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 YxiJ PF14176.1 gi|385776129|ref|YP_005648697.1| - 0.074 13.1 0.1 0.074 13.1 0.1 2.6 3 0 0 3 3 3 0 YxiJ-like protein Cob_adeno_trans PF01923.13 gi|385776130|ref|YP_005648698.1| - 4.1e-50 169.7 0.0 4.9e-50 169.5 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ATP_bind_3 PF01171.15 gi|385776131|ref|YP_005648699.1| - 5.9e-13 48.7 0.0 9.9e-13 47.9 0.0 1.4 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|385776131|ref|YP_005648699.1| - 0.004 16.0 0.0 0.0056 15.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|385776131|ref|YP_005648699.1| - 0.026 13.1 0.0 0.037 12.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DZR PF12773.2 gi|385776131|ref|YP_005648699.1| - 0.034 13.9 10.3 0.066 13.0 0.5 2.9 3 0 0 3 3 3 0 Double zinc ribbon Asn_synthase PF00733.16 gi|385776131|ref|YP_005648699.1| - 0.071 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase PIG-H PF10181.4 gi|385776131|ref|YP_005648699.1| - 0.089 12.4 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 GPI-GlcNAc transferase complex, PIG-H component ThiI PF02568.9 gi|385776131|ref|YP_005648699.1| - 0.11 11.9 0.2 0.38 10.1 0.1 1.9 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) zf-dskA_traR PF01258.12 gi|385776131|ref|YP_005648699.1| - 2 8.2 7.8 44 3.9 0.0 3.2 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-C4pol PF14260.1 gi|385776131|ref|YP_005648699.1| - 8.5 6.4 14.1 0.78 9.7 0.5 3.6 3 1 0 3 3 3 0 C4-type zinc-finger of DNA polymerase delta DUF211 PF02680.9 gi|385776132|ref|YP_005648700.1| - 1.5e-35 120.8 3.8 1.7e-35 120.6 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 AdoMet_dc PF02675.10 gi|385776133|ref|YP_005648701.1| - 7.3e-35 119.0 0.0 8.2e-35 118.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase UbiA PF01040.13 gi|385776136|ref|YP_005648704.1| - 2.4e-36 125.2 24.2 3.3e-36 124.8 16.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Gly-zipper_Omp PF13488.1 gi|385776136|ref|YP_005648704.1| - 0.041 13.5 0.8 0.09 12.4 0.6 1.6 1 0 0 1 1 1 0 Glycine zipper MMR_HSR1 PF01926.18 gi|385776138|ref|YP_005648706.1| - 1.8e-15 56.9 0.2 5.1e-12 45.7 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase DUF258 PF03193.11 gi|385776138|ref|YP_005648706.1| - 1.4e-06 27.5 0.0 2.4e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|385776138|ref|YP_005648706.1| - 1.5e-05 24.9 1.1 0.013 15.2 0.0 2.9 3 0 0 3 3 3 2 Dynamin family FeoB_N PF02421.13 gi|385776138|ref|YP_005648706.1| - 1.7e-05 24.1 0.1 0.018 14.3 0.0 2.5 3 0 0 3 3 3 2 Ferrous iron transport protein B Miro PF08477.8 gi|385776138|ref|YP_005648706.1| - 0.0029 18.0 0.0 0.013 15.9 0.0 2.0 2 0 0 2 2 2 1 Miro-like protein AIG1 PF04548.11 gi|385776138|ref|YP_005648706.1| - 0.0064 15.6 0.0 0.37 9.8 0.0 2.1 2 0 0 2 2 2 1 AIG1 family GTP_EFTU PF00009.22 gi|385776138|ref|YP_005648706.1| - 0.0071 15.7 0.1 0.12 11.8 0.0 2.1 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AAA_17 PF13207.1 gi|385776138|ref|YP_005648706.1| - 0.011 16.5 0.1 0.022 15.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain IcmL PF11393.3 gi|385776138|ref|YP_005648706.1| - 0.014 15.3 0.0 0.42 10.5 0.0 2.4 2 0 0 2 2 2 0 Macrophage killing protein with similarity to conjugation protein AAA_23 PF13476.1 gi|385776138|ref|YP_005648706.1| - 0.048 13.9 0.4 0.15 12.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|385776138|ref|YP_005648706.1| - 0.082 12.0 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|385776138|ref|YP_005648706.1| - 0.086 12.8 0.1 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain 6PF2K PF01591.13 gi|385776138|ref|YP_005648706.1| - 0.1 11.6 0.3 4.5 6.2 0.0 2.8 3 0 0 3 3 3 0 6-phosphofructo-2-kinase Acid_PPase PF12689.2 gi|385776139|ref|YP_005648707.1| - 1.4e-10 41.0 0.2 3.6e-10 39.7 0.1 1.7 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.1 gi|385776139|ref|YP_005648707.1| - 5e-07 30.1 0.2 4.8e-06 26.8 0.0 2.2 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF705 PF05152.7 gi|385776139|ref|YP_005648707.1| - 0.0014 17.6 0.1 0.008 15.1 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF705) Hydrolase PF00702.21 gi|385776139|ref|YP_005648707.1| - 0.0045 17.4 0.0 0.82 10.0 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|385776139|ref|YP_005648707.1| - 0.01 15.4 0.1 0.014 15.1 0.1 1.2 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase TatD_DNase PF01026.16 gi|385776139|ref|YP_005648707.1| - 0.1 11.7 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 TatD related DNase TPP_enzyme_N PF02776.13 gi|385776140|ref|YP_005648708.1| - 5.7e-59 198.4 0.0 3.3e-57 192.7 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|385776140|ref|YP_005648708.1| - 1.5e-46 157.7 0.0 8.4e-46 155.3 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|385776140|ref|YP_005648708.1| - 4.9e-37 126.7 0.1 2e-36 124.7 0.0 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|385776140|ref|YP_005648708.1| - 0.0008 18.9 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACT_5 PF13710.1 gi|385776141|ref|YP_005648709.1| - 0.0064 16.2 0.0 0.0094 15.7 0.0 1.3 1 0 0 1 1 1 1 ACT domain IlvN PF07991.7 gi|385776142|ref|YP_005648710.1| - 3.6e-71 237.8 0.1 5.8e-71 237.1 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|385776142|ref|YP_005648710.1| - 1.9e-44 151.0 2.0 2.6e-44 150.6 1.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|385776142|ref|YP_005648710.1| - 4.2e-09 36.7 0.0 1e-08 35.5 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|385776142|ref|YP_005648710.1| - 1.4e-06 28.1 0.0 4.8e-06 26.5 0.0 1.9 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|385776142|ref|YP_005648710.1| - 7.7e-06 25.1 0.0 1.6e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|385776142|ref|YP_005648710.1| - 3.5e-05 23.5 1.4 0.011 15.5 0.2 2.8 2 2 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.16 gi|385776142|ref|YP_005648710.1| - 0.00018 21.3 0.2 0.0039 17.0 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|385776142|ref|YP_005648710.1| - 0.016 14.6 0.1 0.038 13.4 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PDH PF02153.12 gi|385776142|ref|YP_005648710.1| - 0.051 12.4 0.0 0.076 11.8 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase Oxidored_nitro PF00148.14 gi|385776142|ref|YP_005648710.1| - 0.052 12.1 0.1 0.11 11.0 0.0 1.6 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase TrkA_N PF02254.13 gi|385776142|ref|YP_005648710.1| - 0.076 13.0 0.0 0.18 11.8 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|385776142|ref|YP_005648710.1| - 0.094 12.7 0.0 0.17 11.8 0.0 1.7 1 1 0 1 1 1 0 NADH(P)-binding Shikimate_DH PF01488.15 gi|385776142|ref|YP_005648710.1| - 0.13 12.3 0.0 0.41 10.7 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Hjc PF01870.13 gi|385776143|ref|YP_005648711.1| - 1.3e-25 88.8 0.1 2e-25 88.1 0.1 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) SMC_hinge PF06470.8 gi|385776143|ref|YP_005648711.1| - 0.09 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain T2SE PF00437.15 gi|385776144|ref|YP_005648712.1| - 2.1e-10 39.9 0.0 3.3e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|385776144|ref|YP_005648712.1| - 4.9e-06 27.3 0.3 2.7e-05 24.9 0.0 2.4 3 1 0 3 3 2 1 AAA domain AAA_18 PF13238.1 gi|385776144|ref|YP_005648712.1| - 0.00058 20.1 0.0 0.00058 20.1 0.0 2.9 4 0 0 4 4 2 1 AAA domain IstB_IS21 PF01695.12 gi|385776144|ref|YP_005648712.1| - 0.0014 18.0 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|385776144|ref|YP_005648712.1| - 0.0029 16.5 0.0 0.0059 15.5 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_28 PF13521.1 gi|385776144|ref|YP_005648712.1| - 0.0035 17.3 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385776144|ref|YP_005648712.1| - 0.0058 16.7 0.0 0.042 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|385776144|ref|YP_005648712.1| - 0.0061 16.2 1.4 0.14 11.8 0.0 2.8 3 0 0 3 3 3 1 NTPase RuvB_N PF05496.7 gi|385776144|ref|YP_005648712.1| - 0.0066 15.5 0.0 0.036 13.0 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|385776144|ref|YP_005648712.1| - 0.0068 15.8 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385776144|ref|YP_005648712.1| - 0.0077 15.9 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|385776144|ref|YP_005648712.1| - 0.0083 16.0 0.0 0.078 12.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|385776144|ref|YP_005648712.1| - 0.0094 16.1 0.0 0.028 14.5 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|385776144|ref|YP_005648712.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|385776144|ref|YP_005648712.1| - 0.012 15.4 0.0 0.046 13.6 0.0 2.0 2 0 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|385776144|ref|YP_005648712.1| - 0.016 14.9 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|385776144|ref|YP_005648712.1| - 0.025 13.3 0.0 0.045 12.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein FtsK_SpoIIIE PF01580.13 gi|385776144|ref|YP_005648712.1| - 0.027 13.9 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family SRP54 PF00448.17 gi|385776144|ref|YP_005648712.1| - 0.031 13.7 0.3 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|385776144|ref|YP_005648712.1| - 0.036 13.8 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|385776144|ref|YP_005648712.1| - 0.04 13.0 0.0 0.15 11.1 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin KTI12 PF08433.5 gi|385776144|ref|YP_005648712.1| - 0.061 12.5 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|385776144|ref|YP_005648712.1| - 0.067 12.7 0.1 0.15 11.5 0.0 1.6 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|385776144|ref|YP_005648712.1| - 0.086 13.0 0.0 0.24 11.6 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|385776144|ref|YP_005648712.1| - 0.15 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain SRI PF08236.6 gi|385776144|ref|YP_005648712.1| - 1.2 9.0 4.1 0.71 9.8 0.8 2.1 2 0 0 2 2 1 0 SRI (Set2 Rpb1 interacting) domain SNO PF01174.14 gi|385776145|ref|YP_005648713.1| - 9.8e-48 162.2 0.0 1.2e-47 161.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|385776145|ref|YP_005648713.1| - 2e-11 43.7 0.3 3.5e-11 42.9 0.2 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|385776145|ref|YP_005648713.1| - 1.1e-08 34.9 0.0 1.4e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|385776145|ref|YP_005648713.1| - 2.7e-07 30.2 0.1 3.3e-06 26.6 0.1 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|385776145|ref|YP_005648713.1| - 0.00019 20.9 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|385776145|ref|YP_005648713.1| - 0.0022 17.2 0.0 0.0035 16.6 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|385776145|ref|YP_005648713.1| - 0.064 12.6 0.7 1.6 8.1 0.3 2.7 1 1 1 2 2 2 0 Peptidase C26 SOR_SNZ PF01680.12 gi|385776146|ref|YP_005648714.1| - 5.4e-97 323.4 3.3 7e-97 323.0 2.3 1.1 1 0 0 1 1 1 1 SOR/SNZ family IGPS PF00218.16 gi|385776146|ref|YP_005648714.1| - 9.2e-06 24.8 0.0 0.0087 15.1 0.0 2.3 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase ThiG PF05690.9 gi|385776146|ref|YP_005648714.1| - 1.2e-05 24.4 3.6 5.8e-05 22.2 0.1 2.5 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG OMPdecase PF00215.19 gi|385776146|ref|YP_005648714.1| - 0.0025 17.2 0.6 1.2 8.4 0.1 2.7 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family Dus PF01207.12 gi|385776146|ref|YP_005648714.1| - 0.0027 16.5 0.1 0.23 10.2 0.0 2.6 2 2 0 2 2 2 1 Dihydrouridine synthase (Dus) NanE PF04131.9 gi|385776146|ref|YP_005648714.1| - 0.015 14.2 0.3 0.36 9.7 0.0 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|385776146|ref|YP_005648714.1| - 0.023 13.9 0.0 0.07 12.3 0.0 1.8 1 0 0 1 1 1 0 PcrB family NMO PF03060.10 gi|385776146|ref|YP_005648714.1| - 0.024 13.7 0.2 0.024 13.7 0.1 2.4 2 1 0 2 2 2 0 Nitronate monooxygenase Trp_syntA PF00290.15 gi|385776146|ref|YP_005648714.1| - 0.03 12.8 0.0 0.053 12.0 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|385776146|ref|YP_005648714.1| - 0.031 13.5 0.9 2.2 7.5 0.1 2.9 2 2 1 3 3 3 0 Histidine biosynthesis protein PAP_RNA-bind PF04926.10 gi|385776146|ref|YP_005648714.1| - 0.063 12.7 0.2 0.51 9.8 0.0 2.5 2 1 0 2 2 2 0 Poly(A) polymerase predicted RNA binding domain K-box PF01486.12 gi|385776146|ref|YP_005648714.1| - 0.074 12.8 0.0 0.6 9.9 0.0 2.2 2 0 0 2 2 2 0 K-box region Ribosomal_S26e PF01283.14 gi|385776147|ref|YP_005648715.1| - 6.5e-29 100.4 4.5 7.1e-29 100.3 3.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.12 gi|385776147|ref|YP_005648715.1| - 0.071 12.8 6.2 0.086 12.5 0.3 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger HECT_2 PF09814.4 gi|385776147|ref|YP_005648715.1| - 0.12 11.0 0.5 0.15 10.7 0.3 1.3 1 1 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Yippee-Mis18 PF03226.9 gi|385776147|ref|YP_005648715.1| - 0.17 11.9 1.7 2.6 8.1 1.4 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DZR PF12773.2 gi|385776147|ref|YP_005648715.1| - 0.2 11.4 5.6 1.5 8.6 3.9 2.1 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|385776147|ref|YP_005648715.1| - 0.31 11.3 4.0 3 8.1 2.8 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar tRNA-synt_2b PF00587.20 gi|385776148|ref|YP_005648716.1| - 4.2e-27 94.8 0.1 8.9e-27 93.7 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|385776148|ref|YP_005648716.1| - 4.7e-18 64.9 0.5 1.1e-17 63.7 0.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|385776148|ref|YP_005648716.1| - 9.4e-17 60.6 0.4 2.1e-16 59.5 0.3 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2 PF00152.15 gi|385776148|ref|YP_005648716.1| - 0.035 12.8 3.5 0.18 10.5 1.9 2.4 1 1 1 2 2 2 0 tRNA synthetases class II (D, K and N) UPF0150 PF03681.10 gi|385776148|ref|YP_005648716.1| - 0.13 11.9 0.0 0.39 10.3 0.0 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) ATP-synt_C PF00137.16 gi|385776149|ref|YP_005648717.1| - 2.5e-15 56.0 21.4 2.5e-15 56.0 14.8 1.7 2 0 0 2 2 2 1 ATP synthase subunit C Nitrate_red_gam PF02665.9 gi|385776149|ref|YP_005648717.1| - 0.1 11.9 2.4 0.12 11.6 1.7 1.3 1 0 0 1 1 1 0 Nitrate reductase gamma subunit ATP-synt_E_2 PF08112.6 gi|385776150|ref|YP_005648718.1| - 4.1e-25 87.5 12.3 4.5e-25 87.4 8.6 1.0 1 0 0 1 1 1 1 ATP synthase epsilon subunit ATP-synt_B PF00430.13 gi|385776150|ref|YP_005648718.1| - 0.031 14.0 1.6 0.032 14.0 1.1 1.0 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) BAR_2 PF10455.4 gi|385776150|ref|YP_005648718.1| - 0.049 12.5 1.7 0.052 12.4 1.2 1.0 1 0 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Orthopox_B11R PF07033.6 gi|385776150|ref|YP_005648718.1| - 0.36 10.3 4.2 0.95 8.9 3.0 1.7 1 1 0 1 1 1 0 Orthopoxvirus B11R protein RsbU_N PF08673.5 gi|385776150|ref|YP_005648718.1| - 0.41 10.6 2.7 1.9 8.5 1.9 1.9 1 1 0 1 1 1 0 Phosphoserine phosphatase RsbU, N-terminal domain DUF1700 PF08006.6 gi|385776150|ref|YP_005648718.1| - 2.5 7.3 4.5 4.8 6.4 3.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) ATP-synt_D PF01813.12 gi|385776151|ref|YP_005648719.1| - 1.1e-52 178.4 7.5 1.3e-52 178.2 5.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D GPAT_N PF14829.1 gi|385776151|ref|YP_005648719.1| - 0.0006 19.4 1.7 0.0022 17.6 1.0 2.0 1 1 1 2 2 2 1 Glycerol-3-phosphate acyltransferase N-terminal NHR2 PF08788.6 gi|385776151|ref|YP_005648719.1| - 0.009 15.4 0.0 2.1 7.8 0.0 2.4 2 0 0 2 2 2 2 NHR2 domain like ECH PF00378.15 gi|385776151|ref|YP_005648719.1| - 0.066 12.3 0.1 0.18 10.9 0.0 1.7 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase family ATP-synt_ab PF00006.20 gi|385776152|ref|YP_005648720.1| - 2.3e-60 203.7 0.0 3.1e-60 203.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|385776152|ref|YP_005648720.1| - 4.8e-13 49.5 0.0 9.4e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|385776152|ref|YP_005648720.1| - 1.4e-10 41.2 1.3 6e-10 39.1 0.6 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|385776152|ref|YP_005648720.1| - 6e-05 22.8 0.1 0.0003 20.6 0.1 2.0 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|385776153|ref|YP_005648721.1| - 2.4e-88 295.2 0.0 3.8e-88 294.5 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|385776153|ref|YP_005648721.1| - 3.3e-19 69.4 0.7 6e-19 68.5 0.5 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|385776153|ref|YP_005648721.1| - 7.6e-14 51.6 1.5 1e-13 51.3 0.3 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|385776153|ref|YP_005648721.1| - 0.032 14.3 0.0 0.093 12.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain vATP-synt_E PF01991.13 gi|385776154|ref|YP_005648722.1| - 8.6e-13 48.0 14.5 5e-12 45.5 9.7 2.4 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Sec3_C PF09763.4 gi|385776154|ref|YP_005648722.1| - 0.016 13.4 5.2 0.019 13.1 3.6 1.1 1 0 0 1 1 1 0 Exocyst complex component Sec3 FliH PF02108.11 gi|385776154|ref|YP_005648722.1| - 0.016 15.0 1.3 0.18 11.6 0.1 2.3 1 1 1 2 2 2 0 Flagellar assembly protein FliH Sec16_C PF12931.2 gi|385776154|ref|YP_005648722.1| - 0.016 14.9 1.1 3.8 7.1 0.1 2.3 1 1 1 2 2 2 0 Sec23-binding domain of Sec16 RHH_3 PF12651.2 gi|385776154|ref|YP_005648722.1| - 0.027 14.1 0.6 0.064 13.0 0.4 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix domain DUF445 PF04286.7 gi|385776154|ref|YP_005648722.1| - 0.03 13.8 9.2 0.23 10.9 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF445) Sec8_exocyst PF04048.9 gi|385776154|ref|YP_005648722.1| - 0.048 13.2 2.4 0.091 12.3 1.6 1.6 1 1 0 1 1 1 0 Sec8 exocyst complex component specific domain ACP PF06857.6 gi|385776154|ref|YP_005648722.1| - 0.083 12.8 1.1 2.6 7.9 0.1 2.6 2 2 0 2 2 2 0 Malonate decarboxylase delta subunit (MdcD) DUF3298 PF11738.3 gi|385776154|ref|YP_005648722.1| - 0.16 12.4 0.3 3.5 8.2 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3298) MCP_N PF05581.7 gi|385776154|ref|YP_005648722.1| - 0.29 11.2 1.8 0.65 10.1 0.1 2.2 2 0 0 2 2 2 0 Vibrio chemotaxis protein N terminus Spore_II_R PF09551.5 gi|385776154|ref|YP_005648722.1| - 3.3 7.7 9.8 3.4 7.7 1.5 2.3 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) ATP-synt_F PF01990.12 gi|385776155|ref|YP_005648723.1| - 4.9e-16 58.8 0.1 5.4e-16 58.7 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit V_ATPase_I PF01496.14 gi|385776156|ref|YP_005648724.1| - 1.7e-65 221.2 16.8 1.1e-63 215.3 11.7 2.1 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF4140 PF13600.1 gi|385776156|ref|YP_005648724.1| - 0.015 15.7 0.3 0.015 15.7 0.2 2.2 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) GrpE PF01025.14 gi|385776156|ref|YP_005648724.1| - 1.9 8.0 7.7 7.5 6.0 0.3 2.4 2 0 0 2 2 2 0 GrpE DUF972 PF06156.8 gi|385776156|ref|YP_005648724.1| - 6.2 7.2 5.5 2.8 8.3 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF972) tRNA-synt_1g PF09334.6 gi|385776157|ref|YP_005648725.1| - 1.7e-146 487.8 0.1 2.1e-146 487.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|385776157|ref|YP_005648725.1| - 1.1e-11 43.4 0.3 3.1e-06 25.5 0.0 3.1 2 1 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|385776157|ref|YP_005648725.1| - 2.2e-06 27.4 0.1 4.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.2 gi|385776157|ref|YP_005648725.1| - 0.032 14.0 3.7 0.053 13.3 2.0 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|385776157|ref|YP_005648725.1| - 0.096 11.9 8.5 0.29 10.3 0.2 2.7 2 1 1 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|385776157|ref|YP_005648725.1| - 0.75 9.5 6.1 4 7.2 0.6 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_primase_lrg PF04104.9 gi|385776158|ref|YP_005648726.1| - 3.9e-14 52.5 5.0 4.3e-07 29.4 0.1 3.0 1 1 2 3 3 3 2 Eukaryotic and archaeal DNA primase, large subunit CDP-OH_P_transf PF01066.16 gi|385776159|ref|YP_005648727.1| - 2.6e-17 62.9 4.6 2.6e-17 62.9 3.2 2.1 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF4064 PF13273.1 gi|385776159|ref|YP_005648727.1| - 0.011 15.8 3.4 0.011 15.8 2.4 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) FA_desaturase PF00487.19 gi|385776159|ref|YP_005648727.1| - 0.44 9.9 6.0 0.12 11.8 1.5 1.7 2 0 0 2 2 2 0 Fatty acid desaturase DUF4181 PF13789.1 gi|385776159|ref|YP_005648727.1| - 7 6.6 19.9 1.5 8.7 3.9 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4181) Methyltransf_31 PF13847.1 gi|385776161|ref|YP_005648729.1| - 5.3e-12 45.5 0.1 6.9e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385776161|ref|YP_005648729.1| - 1.2e-09 38.7 0.0 1.7e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|385776161|ref|YP_005648729.1| - 5.2e-09 35.7 0.1 8.1e-08 31.8 0.1 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.8 gi|385776161|ref|YP_005648729.1| - 6e-09 35.4 0.3 7.5e-09 35.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|385776161|ref|YP_005648729.1| - 3e-08 32.9 0.1 3.9e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|385776161|ref|YP_005648729.1| - 4.5e-08 33.1 0.0 5.7e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|385776161|ref|YP_005648729.1| - 4.6e-07 29.1 0.0 5.6e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|385776161|ref|YP_005648729.1| - 1.6e-06 28.3 0.0 2.2e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385776161|ref|YP_005648729.1| - 2.2e-06 27.1 0.1 3e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|385776161|ref|YP_005648729.1| - 2.4e-05 24.0 0.0 3.2e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|385776161|ref|YP_005648729.1| - 3.3e-05 24.2 0.0 5.2e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|385776161|ref|YP_005648729.1| - 9.9e-05 21.1 0.0 0.00013 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.11 gi|385776161|ref|YP_005648729.1| - 0.00011 21.9 0.3 0.00013 21.6 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein N6_Mtase PF02384.11 gi|385776161|ref|YP_005648729.1| - 0.00021 20.4 0.0 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase TehB PF03848.9 gi|385776161|ref|YP_005648729.1| - 0.00075 18.7 0.1 0.001 18.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|385776161|ref|YP_005648729.1| - 0.0019 17.5 0.1 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DUF633 PF04816.7 gi|385776161|ref|YP_005648729.1| - 0.0023 17.3 0.2 0.0049 16.2 0.1 1.6 1 1 0 1 1 1 1 Family of unknown function (DUF633) Methyltransf_12 PF08242.7 gi|385776161|ref|YP_005648729.1| - 0.0026 18.1 0.1 0.0065 16.9 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|385776161|ref|YP_005648729.1| - 0.0034 16.9 0.0 0.0042 16.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|385776161|ref|YP_005648729.1| - 0.0053 16.2 0.0 0.0097 15.4 0.0 1.3 1 0 0 1 1 1 1 DNA methylase Methyltransf_8 PF05148.10 gi|385776161|ref|YP_005648729.1| - 0.017 14.7 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_23 PF13489.1 gi|385776161|ref|YP_005648729.1| - 0.02 14.6 0.1 0.029 14.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|385776161|ref|YP_005648729.1| - 0.03 13.8 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|385776161|ref|YP_005648729.1| - 0.085 11.8 0.1 0.12 11.4 0.1 1.3 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|385776161|ref|YP_005648729.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF2286 PF10051.4 gi|385776162|ref|YP_005648730.1| - 5.7e-56 188.0 8.8 6.2e-56 187.9 6.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Thr_synth_N PF14821.1 gi|385776162|ref|YP_005648730.1| - 0.059 13.4 0.2 0.16 12.0 0.1 1.7 2 0 0 2 2 2 0 Threonine synthase N terminus IpaB_EvcA PF03278.8 gi|385776162|ref|YP_005648730.1| - 0.078 12.2 1.0 0.26 10.4 0.1 1.9 2 0 0 2 2 2 0 IpaB/EvcA family DNA_pol_B PF00136.16 gi|385776163|ref|YP_005648731.1| - 1.1e-97 327.7 1.2 1.6e-97 327.2 0.8 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|385776163|ref|YP_005648731.1| - 3.4e-32 111.5 1.2 9.3e-32 110.1 0.8 1.8 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|385776163|ref|YP_005648731.1| - 2.5e-06 27.3 0.4 3.1e-05 23.8 0.2 2.9 2 1 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|385776163|ref|YP_005648731.1| - 6.1e-06 25.9 0.0 1.7e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB ACT_6 PF13740.1 gi|385776163|ref|YP_005648731.1| - 0.018 14.7 0.0 0.067 12.9 0.0 1.9 1 0 0 1 1 1 0 ACT domain ACT PF01842.20 gi|385776163|ref|YP_005648731.1| - 0.16 11.4 0.3 0.85 9.1 0.0 2.3 2 0 0 2 2 2 0 ACT domain DUF367 PF04034.8 gi|385776164|ref|YP_005648732.1| - 3.8e-46 155.8 0.1 4.5e-46 155.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|385776164|ref|YP_005648732.1| - 1.4e-12 46.9 0.3 2.2e-12 46.3 0.2 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI MS_channel PF00924.13 gi|385776165|ref|YP_005648733.1| - 7.6e-20 71.1 0.5 7.6e-20 71.1 0.3 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel Polysacc_synt PF01943.12 gi|385776165|ref|YP_005648733.1| - 0.061 12.5 20.9 0.11 11.8 14.5 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein PGK PF00162.14 gi|385776167|ref|YP_005648735.1| - 2.5e-111 371.9 0.1 2.8e-111 371.7 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.15 gi|385776168|ref|YP_005648736.1| - 9.8e-18 64.0 5.1 1.5e-17 63.5 3.5 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|385776168|ref|YP_005648736.1| - 3.3e-17 62.8 0.1 3.3e-17 62.8 0.1 2.5 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|385776168|ref|YP_005648736.1| - 2.3e-11 43.6 0.2 7.8e-11 41.9 0.0 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|385776168|ref|YP_005648736.1| - 9.9e-05 22.7 0.2 0.00061 20.1 0.0 2.4 3 0 0 3 3 3 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385776168|ref|YP_005648736.1| - 0.0042 16.2 1.0 0.2 10.7 0.1 3.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|385776168|ref|YP_005648736.1| - 0.017 15.4 0.2 0.094 13.0 0.0 2.3 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|385776168|ref|YP_005648736.1| - 0.02 14.7 1.0 0.89 9.3 0.0 2.8 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Usp PF00582.21 gi|385776169|ref|YP_005648737.1| - 8.5e-21 74.6 0.0 1.3e-20 74.0 0.0 1.3 1 1 0 1 1 1 1 Universal stress protein family SHMT PF00464.14 gi|385776170|ref|YP_005648738.1| - 9.5e-66 221.7 0.1 1.3e-65 221.3 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|385776170|ref|YP_005648738.1| - 5.8e-09 35.3 0.0 2.2e-08 33.4 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|385776170|ref|YP_005648738.1| - 9.9e-09 34.7 0.0 1.3e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|385776170|ref|YP_005648738.1| - 0.00017 20.4 0.1 0.00066 18.5 0.1 1.9 1 1 0 1 1 1 1 Aminotransferase class-V SelA PF03841.8 gi|385776170|ref|YP_005648738.1| - 0.061 12.0 0.0 0.11 11.2 0.0 1.6 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Adenine_glyco PF03352.8 gi|385776170|ref|YP_005648738.1| - 0.15 11.5 2.6 1.1 8.7 0.0 3.2 3 1 1 4 4 4 0 Methyladenine glycosylase DUF919 PF06034.6 gi|385776170|ref|YP_005648738.1| - 2.5 7.7 6.7 1.4 8.6 0.7 2.9 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF919) HMG-CoA_red PF00368.13 gi|385776171|ref|YP_005648739.1| - 8.8e-146 485.3 0.3 1.1e-145 485.0 0.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF35 PF01796.12 gi|385776172|ref|YP_005648740.1| - 1.7e-13 50.5 0.0 2.2e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|385776172|ref|YP_005648740.1| - 5.2e-06 26.2 0.0 8.4e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|385776172|ref|YP_005648740.1| - 0.002 17.9 1.5 0.003 17.3 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|385776172|ref|YP_005648740.1| - 0.014 15.2 1.8 0.045 13.5 1.3 1.8 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|385776172|ref|YP_005648740.1| - 0.015 14.8 3.0 0.49 9.9 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|385776172|ref|YP_005648740.1| - 0.042 13.3 0.3 5.2 6.6 0.1 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|385776172|ref|YP_005648740.1| - 0.055 13.1 2.6 2 8.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|385776172|ref|YP_005648740.1| - 0.082 12.1 5.1 0.19 11.0 3.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|385776172|ref|YP_005648740.1| - 0.7 9.6 2.8 2.9 7.7 2.0 1.9 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ACP_syn_III PF08545.5 gi|385776173|ref|YP_005648741.1| - 5.9e-05 22.6 0.1 0.0036 16.9 0.0 2.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|385776173|ref|YP_005648741.1| - 0.0009 18.3 0.0 0.0017 17.4 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III_C PF08541.5 gi|385776174|ref|YP_005648742.1| - 9.3e-12 44.8 0.0 8.8e-11 41.6 0.0 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|385776174|ref|YP_005648742.1| - 1.4e-05 24.7 0.1 0.0042 16.6 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|385776174|ref|YP_005648742.1| - 1.7e-05 24.3 0.8 3.9e-05 23.2 0.6 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Chal_sti_synt_N PF00195.14 gi|385776174|ref|YP_005648742.1| - 0.0056 15.9 0.0 0.075 12.2 0.0 2.1 2 0 0 2 2 2 1 Chalcone and stilbene synthases, N-terminal domain Thiolase_C PF02803.13 gi|385776174|ref|YP_005648742.1| - 0.037 13.4 0.0 0.075 12.4 0.0 1.5 1 0 0 1 1 1 0 Thiolase, C-terminal domain AdoMet_dc PF02675.10 gi|385776175|ref|YP_005648743.1| - 6.2e-34 116.0 0.0 7.2e-34 115.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase YbaB_DNA_bd PF02575.11 gi|385776175|ref|YP_005648743.1| - 0.0055 16.5 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 YbaB/EbfC DNA-binding family MMS22L_N PF14910.1 gi|385776177|ref|YP_005648745.1| - 0.018 13.3 0.0 0.024 12.9 0.0 1.1 1 0 0 1 1 1 0 S-phase genomic integrity recombination mediator, N-terminal Phage_int_SAM_4 PF13495.1 gi|385776177|ref|YP_005648745.1| - 0.034 14.4 0.1 0.099 12.9 0.0 1.8 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain MogR_DNAbind PF12181.3 gi|385776177|ref|YP_005648745.1| - 0.044 13.5 3.6 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 DNA binding domain of the motility gene repressor (MogR) DUF3890 PF13029.1 gi|385776177|ref|YP_005648745.1| - 0.062 13.3 0.1 0.18 11.8 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3890) Frankia_peptide PF14407.1 gi|385776177|ref|YP_005648745.1| - 0.087 12.5 0.2 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Thermopsin PF05317.6 gi|385776179|ref|YP_005648747.1| - 2.8e-67 226.4 22.9 2.8e-67 226.4 15.9 3.0 1 1 1 3 3 3 2 Thermopsin Phage_portal PF04860.7 gi|385776179|ref|YP_005648747.1| - 0.0018 16.9 0.1 0.0036 16.0 0.1 1.4 1 0 0 1 1 1 1 Phage portal protein HemY_N PF07219.8 gi|385776179|ref|YP_005648747.1| - 0.03 13.8 1.8 0.067 12.7 1.2 1.5 1 0 0 1 1 1 0 HemY protein N-terminus Vpu PF00558.14 gi|385776179|ref|YP_005648747.1| - 0.035 13.6 2.1 0.086 12.4 1.5 1.6 1 0 0 1 1 1 0 Vpu protein Zn_Tnp_IS1 PF03811.8 gi|385776180|ref|YP_005648748.1| - 1.7e-05 24.1 9.3 2.7e-05 23.5 6.4 1.3 1 0 0 1 1 1 1 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|385776180|ref|YP_005648748.1| - 0.0055 16.4 5.4 0.0082 15.9 3.7 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|385776180|ref|YP_005648748.1| - 0.024 14.4 3.2 0.79 9.5 2.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|385776180|ref|YP_005648748.1| - 0.072 12.9 0.9 0.093 12.6 0.6 1.3 1 0 0 1 1 1 0 FYVE zinc finger GFA PF04828.9 gi|385776180|ref|YP_005648748.1| - 0.089 12.7 1.7 2.4 8.1 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn-ribbon_8 PF09723.5 gi|385776180|ref|YP_005648748.1| - 0.27 11.2 6.2 0.92 9.5 0.6 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-Dof PF02701.10 gi|385776180|ref|YP_005648748.1| - 0.65 9.9 4.1 1.6 8.7 2.8 1.6 1 1 0 1 1 1 0 Dof domain, zinc finger zf-ribbon_3 PF13248.1 gi|385776180|ref|YP_005648748.1| - 0.76 9.0 5.0 1.2 8.3 0.4 2.8 2 1 1 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|385776180|ref|YP_005648748.1| - 1.4 9.0 12.0 3.4 7.7 0.5 2.7 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|385776180|ref|YP_005648748.1| - 1.9 8.2 7.9 4.6 7.0 5.5 1.7 1 1 0 1 1 1 0 Nudix N-terminal zf-Mss51 PF13824.1 gi|385776180|ref|YP_005648748.1| - 2.8 7.8 5.3 9.3 6.2 3.7 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|385776180|ref|YP_005648748.1| - 3.9 7.0 6.7 1.2e+02 2.3 4.7 2.8 1 1 1 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.6 gi|385776180|ref|YP_005648748.1| - 7.9 5.8 7.8 13 5.1 0.1 2.9 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) MFS_1 PF07690.11 gi|385776181|ref|YP_005648749.1| - 9.9e-32 110.0 57.9 2.1e-24 85.9 22.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|385776181|ref|YP_005648749.1| - 8.7e-05 20.8 10.2 8.7e-05 20.8 7.1 1.8 1 1 1 2 2 2 1 Transmembrane secretion effector OATP PF03137.15 gi|385776181|ref|YP_005648749.1| - 0.87 7.5 18.2 0.24 9.4 1.8 3.0 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family NifZ PF04319.8 gi|385776182|ref|YP_005648750.1| - 0.029 13.7 0.1 0.029 13.7 0.1 1.0 1 0 0 1 1 1 0 NifZ domain ADP_ribosyl_GH PF03747.9 gi|385776184|ref|YP_005648752.1| - 7.2e-41 140.8 0.0 8.7e-41 140.5 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase bPH_5 PF10882.3 gi|385776185|ref|YP_005648753.1| - 7.2e-05 22.5 0.4 0.00018 21.2 0.3 1.8 1 1 0 1 1 1 1 Bacterial PH domain Antitoxin-MazE PF04014.13 gi|385776186|ref|YP_005648754.1| - 1.9e-08 33.8 4.4 2e-08 33.7 2.6 1.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE PAZ_siRNAbind PF12212.3 gi|385776186|ref|YP_005648754.1| - 0.043 13.4 1.6 0.21 11.2 0.2 2.2 2 0 0 2 2 2 0 Piwi/Argonaute/Zwille siRNA-binding domain PIN PF01850.16 gi|385776187|ref|YP_005648755.1| - 2.4e-18 66.6 0.9 2.9e-18 66.3 0.6 1.2 1 0 0 1 1 1 1 PIN domain Hormone_2 PF00123.15 gi|385776187|ref|YP_005648755.1| - 0.087 12.6 0.0 0.26 11.1 0.0 1.8 1 0 0 1 1 1 0 Peptide hormone DUF2540 PF10802.3 gi|385776187|ref|YP_005648755.1| - 0.11 12.1 2.5 0.2 11.3 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2540) PNP_UDP_1 PF01048.15 gi|385776189|ref|YP_005648757.1| - 1.1e-16 60.5 0.0 1.3e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Pollen_allerg_1 PF01357.16 gi|385776191|ref|YP_005648759.1| - 0.078 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Pollen allergen SSV1_ORF_D-335 PF07935.6 gi|385776194|ref|YP_005648762.1| - 1e-25 89.2 1.1 1.2e-25 89.0 0.8 1.1 1 0 0 1 1 1 1 ORF D-335-like protein DUF4065 PF13274.1 gi|385776196|ref|YP_005648764.1| - 0.0012 19.5 3.6 0.0025 18.5 2.5 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) SNF2_N PF00176.18 gi|385776197|ref|YP_005648765.1| - 0.084 11.6 0.2 0.2 10.4 0.1 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain PLDc_2 PF13091.1 gi|385776198|ref|YP_005648766.1| - 4.2e-15 55.6 1.7 6.1e-15 55.0 0.1 2.0 2 1 0 2 2 2 1 PLD-like domain RE_NgoFVII PF09565.5 gi|385776198|ref|YP_005648766.1| - 1.7e-08 33.7 1.2 4.1e-08 32.5 0.8 1.8 1 1 0 1 1 1 1 NgoFVII restriction endonuclease Transposase_1 PF01359.13 gi|385776198|ref|YP_005648766.1| - 0.1 12.3 1.4 0.19 11.5 0.3 1.9 2 0 0 2 2 2 0 Transposase (partial DDE domain) DUF1048 PF06304.6 gi|385776199|ref|YP_005648767.1| - 0.069 13.4 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1048) DNA_repr_REX1B PF14966.1 gi|385776201|ref|YP_005648769.1| - 0.015 15.6 0.2 0.018 15.3 0.1 1.1 1 0 0 1 1 1 0 DNA repair REX1-B DUF573 PF04504.9 gi|385776201|ref|YP_005648769.1| - 0.018 15.3 0.7 0.02 15.1 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF573 DUF677 PF05055.7 gi|385776201|ref|YP_005648769.1| - 0.019 13.6 2.5 0.021 13.4 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Cep57_CLD_2 PF14197.1 gi|385776201|ref|YP_005648769.1| - 0.031 14.2 2.7 0.039 13.8 1.9 1.2 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF1669 PF07894.7 gi|385776201|ref|YP_005648769.1| - 0.034 13.3 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1669) FlaC_arch PF05377.6 gi|385776201|ref|YP_005648769.1| - 0.061 13.2 2.4 0.061 13.2 1.6 1.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) RNase_E_G PF10150.4 gi|385776201|ref|YP_005648769.1| - 0.064 12.4 0.2 0.071 12.3 0.1 1.0 1 0 0 1 1 1 0 Ribonuclease E/G family RraB PF06877.6 gi|385776201|ref|YP_005648769.1| - 0.07 13.7 1.1 0.1 13.2 0.7 1.3 1 1 0 1 1 1 0 Regulator of ribonuclease activity B SpoU_sub_bind PF08032.7 gi|385776201|ref|YP_005648769.1| - 0.082 13.0 4.1 1.6 8.9 0.1 2.0 1 1 1 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding CENP-F_leu_zip PF10473.4 gi|385776201|ref|YP_005648769.1| - 0.096 12.5 7.3 1.8 8.4 1.7 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Pox_A_type_inc PF04508.7 gi|385776201|ref|YP_005648769.1| - 0.11 12.3 3.5 0.11 12.3 2.4 2.3 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Transposase_22 PF02994.9 gi|385776201|ref|YP_005648769.1| - 0.12 10.8 6.1 0.12 10.8 4.2 1.0 1 0 0 1 1 1 0 L1 transposable element PLDc_2 PF13091.1 gi|385776201|ref|YP_005648769.1| - 0.12 12.1 0.1 0.13 12.0 0.1 1.1 1 0 0 1 1 1 0 PLD-like domain Pneumo_phosprot PF02478.11 gi|385776201|ref|YP_005648769.1| - 0.14 11.6 2.6 0.15 11.5 1.8 1.0 1 0 0 1 1 1 0 Pneumovirus phosphoprotein AAA_23 PF13476.1 gi|385776201|ref|YP_005648769.1| - 0.71 10.1 3.8 0.83 9.9 2.6 1.0 1 0 0 1 1 1 0 AAA domain RRF PF01765.14 gi|385776201|ref|YP_005648769.1| - 1.2 8.5 6.4 1.4 8.3 4.5 1.0 1 0 0 1 1 1 0 Ribosome recycling factor RHH_1 PF01402.16 gi|385776201|ref|YP_005648769.1| - 2.7 8.0 5.3 7.5 6.6 0.1 2.6 2 2 0 2 2 2 0 Ribbon-helix-helix protein, copG family TypeIII_RM_meth PF12564.3 gi|385776202|ref|YP_005648770.1| - 0.0092 15.9 2.9 0.38 10.7 0.6 2.4 2 0 0 2 2 2 2 Type III restriction/modification enzyme methylation subunit Orbi_NS1 PF01718.11 gi|385776202|ref|YP_005648770.1| - 0.073 11.0 0.1 0.088 10.8 0.1 1.1 1 0 0 1 1 1 0 Orbivirus non-structural protein NS1, or hydrophobic tubular protein TPR_12 PF13424.1 gi|385776203|ref|YP_005648771.1| - 1.6e-08 34.3 18.3 0.039 13.8 0.1 5.7 3 2 3 6 6 6 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|385776203|ref|YP_005648771.1| - 4.7e-08 33.0 3.4 4.7e-08 33.0 2.4 4.9 2 2 2 4 4 4 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.1 gi|385776203|ref|YP_005648771.1| - 2.6e-07 31.1 2.2 1.1 10.0 0.0 4.1 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385776203|ref|YP_005648771.1| - 1.7e-06 28.1 0.4 19 6.2 0.0 6.5 4 3 3 7 7 7 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|385776203|ref|YP_005648771.1| - 1.9e-05 24.1 0.9 1.9e-05 24.1 0.6 4.9 4 2 0 5 5 5 1 TPR repeat TPR_6 PF13174.1 gi|385776203|ref|YP_005648771.1| - 4.1e-05 23.7 10.3 3 8.5 0.0 6.6 7 1 1 8 8 7 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|385776203|ref|YP_005648771.1| - 8.5e-05 22.8 17.4 0.071 13.4 0.4 5.9 3 1 3 6 6 6 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|385776203|ref|YP_005648771.1| - 0.00042 19.8 9.7 0.83 9.5 0.2 6.2 5 2 0 5 5 5 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|385776203|ref|YP_005648771.1| - 0.00071 19.2 15.8 1.2 9.2 0.0 6.4 7 1 0 7 7 5 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|385776203|ref|YP_005648771.1| - 0.004 16.8 36.1 0.01 15.5 0.2 8.0 7 2 1 8 8 8 3 Tetratricopeptide repeat TPR_20 PF14561.1 gi|385776203|ref|YP_005648771.1| - 0.062 13.4 0.1 0.062 13.4 0.1 2.7 4 0 0 4 4 3 0 Tetratricopeptide repeat EF-hand_2 PF09068.6 gi|385776203|ref|YP_005648771.1| - 0.067 13.2 1.3 0.17 11.9 0.1 2.2 2 1 0 2 2 2 0 EF hand DUF1136 PF06582.7 gi|385776203|ref|YP_005648771.1| - 0.2 11.3 5.3 1.3 8.7 0.1 2.7 2 0 0 2 2 2 0 Repeat of unknown function (DUF1136) TPR_10 PF13374.1 gi|385776203|ref|YP_005648771.1| - 0.48 10.4 9.2 43 4.2 0.1 5.7 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|385776203|ref|YP_005648771.1| - 0.77 9.4 20.5 3.8 7.2 0.0 6.0 8 1 1 9 9 8 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|385776203|ref|YP_005648771.1| - 6.9 7.1 12.5 12 6.4 0.0 5.2 6 0 0 6 6 5 0 Tetratricopeptide repeat Antitoxin-MazE PF04014.13 gi|385776204|ref|YP_005648772.1| - 1.1e-09 37.7 0.2 1.3e-09 37.5 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-1a PF01176.14 gi|385776204|ref|YP_005648772.1| - 0.00055 19.2 0.3 0.00068 19.0 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 IU_nuc_hydro PF01156.14 gi|385776205|ref|YP_005648773.1| - 8.5e-78 261.7 0.1 1e-77 261.4 0.1 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase tRNA-synt_1 PF00133.17 gi|385776206|ref|YP_005648774.1| - 1.9e-61 207.8 0.9 8e-50 169.4 0.6 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|385776206|ref|YP_005648774.1| - 4e-28 98.1 1.5 2.6e-12 46.1 0.0 3.8 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|385776206|ref|YP_005648774.1| - 2.8e-20 72.6 2.8 8.2e-20 71.1 2.0 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|385776206|ref|YP_005648774.1| - 2.6e-15 56.3 4.2 8e-09 35.0 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|385776206|ref|YP_005648774.1| - 2.1e-09 36.9 3.5 1.2e-08 34.4 0.4 2.9 3 0 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 LysE PF01810.13 gi|385776207|ref|YP_005648775.1| - 0.0089 15.3 0.4 0.0089 15.3 0.3 2.2 2 1 0 2 2 2 1 LysE type translocator Gram_pos_anchor PF00746.16 gi|385776207|ref|YP_005648775.1| - 2.1 8.2 0.0 2.1 8.2 0.0 3.8 4 0 0 4 4 4 0 Gram positive anchor FeoB_C PF07664.7 gi|385776207|ref|YP_005648775.1| - 10 5.6 7.2 1.1 8.7 0.2 3.0 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus Baculo_11_kDa PF06143.6 gi|385776208|ref|YP_005648776.1| - 0.06 12.7 3.0 0.055 12.8 1.7 1.3 1 1 0 1 1 1 0 Baculovirus 11 kDa family RseC_MucC PF04246.7 gi|385776208|ref|YP_005648776.1| - 0.11 12.0 2.7 0.13 11.8 1.8 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC VMA21 PF09446.5 gi|385776208|ref|YP_005648776.1| - 0.19 11.7 3.2 0.25 11.2 2.2 1.2 1 0 0 1 1 1 0 VMA21-like domain DUF4131 PF13567.1 gi|385776208|ref|YP_005648776.1| - 2.7 7.3 5.4 3.4 7.0 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) TerY-C PF15616.1 gi|385776211|ref|YP_005648779.1| - 0.023 14.6 0.1 0.044 13.7 0.1 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain Thg1C PF14413.1 gi|385776211|ref|YP_005648779.1| - 0.14 11.8 2.5 0.26 11.0 1.7 1.4 1 0 0 1 1 1 0 Thg1 C terminal domain WHG PF13305.1 gi|385776212|ref|YP_005648780.1| - 0.041 14.4 0.0 0.052 14.1 0.0 1.2 1 0 0 1 1 1 0 WHG domain DUF772 PF05598.6 gi|385776217|ref|YP_005648785.1| - 0.00025 20.8 0.0 0.00066 19.5 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|385776217|ref|YP_005648785.1| - 0.0056 16.2 0.0 0.043 13.3 0.0 2.0 1 1 1 2 2 2 1 Transposase DDE domain P5CR_dimer PF14748.1 gi|385776218|ref|YP_005648786.1| - 0.031 14.2 0.0 0.035 14.0 0.0 1.0 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation DUF4322 PF14210.1 gi|385776219|ref|YP_005648787.1| - 3.8e-38 128.7 0.1 9.1e-38 127.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385776219|ref|YP_005648787.1| - 0.0033 17.2 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DDE_5 PF13546.1 gi|385776219|ref|YP_005648787.1| - 0.0034 16.2 0.0 0.0072 15.2 0.0 1.5 2 0 0 2 2 2 1 DDE superfamily endonuclease F420_oxidored PF03807.12 gi|385776220|ref|YP_005648788.1| - 3.3e-20 72.3 0.2 4.7e-20 71.8 0.1 1.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|385776220|ref|YP_005648788.1| - 1.5e-09 37.7 1.1 7.9e-09 35.4 0.7 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|385776220|ref|YP_005648788.1| - 1.6e-06 27.3 0.0 2.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|385776220|ref|YP_005648788.1| - 8.5e-05 22.4 0.1 0.0005 19.9 0.1 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|385776220|ref|YP_005648788.1| - 9.6e-05 21.3 0.2 0.00013 20.9 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase DapB_N PF01113.15 gi|385776220|ref|YP_005648788.1| - 0.00015 21.6 0.1 0.0002 21.2 0.1 1.4 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|385776220|ref|YP_005648788.1| - 0.00041 19.8 0.2 0.0007 19.0 0.1 1.4 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|385776220|ref|YP_005648788.1| - 0.002 18.6 0.0 0.0031 18.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Rossmann-like PF10727.4 gi|385776220|ref|YP_005648788.1| - 0.0025 17.5 0.1 0.0035 17.0 0.1 1.3 1 0 0 1 1 1 1 Rossmann-like domain Shikimate_DH PF01488.15 gi|385776220|ref|YP_005648788.1| - 0.0064 16.5 0.4 0.015 15.4 0.3 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase OCD_Mu_crystall PF02423.10 gi|385776220|ref|YP_005648788.1| - 0.0083 14.9 0.1 0.0088 14.8 0.1 1.2 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family IlvN PF07991.7 gi|385776220|ref|YP_005648788.1| - 0.014 14.7 0.1 0.018 14.4 0.0 1.3 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|385776220|ref|YP_005648788.1| - 0.04 13.9 0.3 0.094 12.7 0.2 1.9 1 1 0 1 1 1 0 TrkA-N domain Semialdhyde_dh PF01118.19 gi|385776220|ref|YP_005648788.1| - 0.076 13.3 0.1 0.12 12.6 0.1 1.5 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF72 PF01904.13 gi|385776221|ref|YP_005648789.1| - 1.6e-44 152.4 1.8 1.8e-44 152.2 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Methyltransf_5 PF01795.14 gi|385776221|ref|YP_005648789.1| - 0.11 11.7 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family MMtag PF10159.4 gi|385776221|ref|YP_005648789.1| - 0.25 11.3 8.7 0.66 10.0 0.5 3.4 4 0 0 4 4 4 0 Kinase phosphorylation protein PALP PF00291.20 gi|385776222|ref|YP_005648790.1| - 4.4e-63 213.3 0.1 5.2e-63 213.1 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ORC4_C PF14629.1 gi|385776222|ref|YP_005648790.1| - 0.048 13.0 0.0 0.1 11.9 0.0 1.5 1 1 1 2 2 2 0 Origin recognition complex (ORC) subunit 4 C-terminus DFP PF04127.10 gi|385776222|ref|YP_005648790.1| - 0.064 12.8 0.2 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Zn-ribbon_8 PF09723.5 gi|385776222|ref|YP_005648790.1| - 0.14 12.1 2.3 0.2 11.6 0.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain ABC_tran PF00005.22 gi|385776223|ref|YP_005648791.1| - 2.7e-28 98.9 0.0 4e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385776223|ref|YP_005648791.1| - 4e-08 33.5 0.5 1.6e-05 24.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385776223|ref|YP_005648791.1| - 2.9e-06 26.6 0.1 3.5e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|385776223|ref|YP_005648791.1| - 0.14 12.0 0.1 1.4 8.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_21 PF13304.1 gi|385776224|ref|YP_005648792.1| - 7.7e-15 55.6 3.4 1.3e-06 28.5 0.2 2.2 1 1 1 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|385776224|ref|YP_005648792.1| - 2.3e-13 50.6 0.0 6.1e-13 49.2 0.0 1.7 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|385776224|ref|YP_005648792.1| - 4e-10 39.2 1.9 0.00021 20.6 0.2 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385776224|ref|YP_005648792.1| - 3e-08 34.2 2.7 5.4e-08 33.4 1.9 1.6 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|385776224|ref|YP_005648792.1| - 3.5e-07 29.1 0.7 0.0011 17.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|385776224|ref|YP_005648792.1| - 4.6e-07 29.2 3.7 0.00032 19.8 0.3 2.2 1 1 1 2 2 2 2 AAA ATPase domain Zeta_toxin PF06414.7 gi|385776224|ref|YP_005648792.1| - 0.00019 20.6 0.3 0.11 11.5 0.1 2.1 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|385776224|ref|YP_005648792.1| - 0.00033 20.9 0.5 0.00072 19.8 0.4 1.6 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385776224|ref|YP_005648792.1| - 0.00037 20.2 2.2 0.00087 19.0 1.4 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|385776224|ref|YP_005648792.1| - 0.00052 19.4 0.1 0.0011 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|385776224|ref|YP_005648792.1| - 0.0016 17.4 0.2 0.0031 16.4 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|385776224|ref|YP_005648792.1| - 0.0021 17.9 0.0 0.0098 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|385776224|ref|YP_005648792.1| - 0.0051 16.4 0.0 0.0087 15.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain MobB PF03205.9 gi|385776224|ref|YP_005648792.1| - 0.0068 16.1 0.1 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|385776224|ref|YP_005648792.1| - 0.0073 15.7 0.1 0.016 14.6 0.0 1.6 2 0 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|385776224|ref|YP_005648792.1| - 0.0077 14.8 0.1 0.02 13.5 0.1 1.6 2 0 0 2 2 2 1 Predicted ATPase of the ABC class NTPase_1 PF03266.10 gi|385776224|ref|YP_005648792.1| - 0.0088 15.7 0.1 0.02 14.6 0.1 1.7 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|385776224|ref|YP_005648792.1| - 0.0095 15.9 0.0 0.012 15.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|385776224|ref|YP_005648792.1| - 0.012 15.8 0.1 0.016 15.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|385776224|ref|YP_005648792.1| - 0.013 15.6 0.0 0.025 14.7 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|385776224|ref|YP_005648792.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|385776224|ref|YP_005648792.1| - 0.017 15.0 0.1 0.53 10.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Adeno_IVa2 PF02456.10 gi|385776224|ref|YP_005648792.1| - 0.019 13.6 0.2 0.042 12.4 0.1 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|385776224|ref|YP_005648792.1| - 0.021 14.2 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|385776224|ref|YP_005648792.1| - 0.027 14.0 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385776224|ref|YP_005648792.1| - 0.032 14.1 0.4 0.061 13.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|385776224|ref|YP_005648792.1| - 0.044 14.6 0.4 0.11 13.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385776224|ref|YP_005648792.1| - 0.05 12.7 0.0 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|385776224|ref|YP_005648792.1| - 0.066 13.7 0.0 0.14 12.6 0.0 1.6 1 1 0 1 1 1 0 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|385776224|ref|YP_005648792.1| - 0.08 12.4 0.3 0.13 11.6 0.2 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.1 gi|385776224|ref|YP_005648792.1| - 0.096 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|385776224|ref|YP_005648792.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF3584 PF12128.3 gi|385776224|ref|YP_005648792.1| - 0.18 9.0 0.2 0.27 8.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FecCD PF01032.13 gi|385776225|ref|YP_005648793.1| - 1e-67 228.2 41.7 1.3e-67 227.8 28.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|385776225|ref|YP_005648793.1| - 0.00067 19.0 26.6 0.00067 19.0 18.4 1.8 2 1 0 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|385776226|ref|YP_005648794.1| - 2e-18 66.4 0.0 2.9e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF3352 PF11832.3 gi|385776226|ref|YP_005648794.1| - 0.067 11.4 0.1 0.093 11.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3352) YWFCY PF14293.1 gi|385776226|ref|YP_005648794.1| - 0.3 10.9 1.4 6.1 6.7 0.3 2.4 2 0 0 2 2 2 0 YWFCY protein TatC PF00902.13 gi|385776227|ref|YP_005648795.1| - 2.8e-46 157.6 24.7 2.8e-46 157.6 17.1 1.3 1 1 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Herpes_HEPA PF03324.9 gi|385776227|ref|YP_005648795.1| - 0.017 15.1 0.6 0.042 13.8 0.4 1.7 1 0 0 1 1 1 0 Herpesvirus DNA helicase/primase complex associated protein PHO4 PF01384.15 gi|385776227|ref|YP_005648795.1| - 2.5 6.6 12.8 1.1 7.7 6.7 1.8 1 1 0 1 1 1 0 Phosphate transporter family SPX PF03105.14 gi|385776228|ref|YP_005648796.1| - 0.00066 19.5 0.8 0.00071 19.4 0.6 1.0 1 0 0 1 1 1 1 SPX domain Phasin PF05597.6 gi|385776228|ref|YP_005648796.1| - 0.0014 18.3 0.5 0.0017 18.1 0.4 1.1 1 0 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) EzrA PF06160.7 gi|385776228|ref|YP_005648796.1| - 0.0041 15.3 0.3 0.0048 15.1 0.2 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA DUF3375 PF11855.3 gi|385776228|ref|YP_005648796.1| - 0.0089 14.8 0.5 0.0089 14.8 0.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3375) bZIP_2 PF07716.10 gi|385776228|ref|YP_005648796.1| - 0.0092 15.7 3.0 0.0092 15.7 2.1 2.1 2 0 0 2 2 2 1 Basic region leucine zipper Cob_adeno_trans PF01923.13 gi|385776228|ref|YP_005648796.1| - 0.015 15.0 0.1 0.02 14.6 0.1 1.2 1 0 0 1 1 1 0 Cobalamin adenosyltransferase IncA PF04156.9 gi|385776228|ref|YP_005648796.1| - 0.02 14.4 1.7 0.031 13.8 1.2 1.3 1 1 0 1 1 1 0 IncA protein FlxA PF14282.1 gi|385776228|ref|YP_005648796.1| - 0.024 14.5 1.5 0.032 14.1 0.4 1.6 1 1 0 1 1 1 0 FlxA-like protein DUF4140 PF13600.1 gi|385776228|ref|YP_005648796.1| - 0.029 14.8 1.3 0.038 14.4 0.6 1.4 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF16 PF01519.11 gi|385776228|ref|YP_005648796.1| - 0.029 14.5 2.4 0.06 13.5 1.8 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 DMPK_coil PF08826.5 gi|385776228|ref|YP_005648796.1| - 0.031 14.1 6.8 0.12 12.3 4.7 1.9 1 1 0 1 1 1 0 DMPK coiled coil domain like DUF342 PF03961.8 gi|385776228|ref|YP_005648796.1| - 0.033 12.6 0.6 0.037 12.4 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) NYD-SP28 PF14772.1 gi|385776228|ref|YP_005648796.1| - 0.049 13.7 0.8 0.066 13.3 0.6 1.2 1 0 0 1 1 1 0 Sperm tail DivIC PF04977.10 gi|385776228|ref|YP_005648796.1| - 0.053 13.0 0.8 0.053 13.0 0.5 2.0 3 0 0 3 3 2 0 Septum formation initiator TMF_DNA_bd PF12329.3 gi|385776228|ref|YP_005648796.1| - 0.054 13.3 2.8 0.054 13.3 1.9 1.8 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF1192 PF06698.6 gi|385776228|ref|YP_005648796.1| - 0.066 13.0 1.7 0.066 13.0 1.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Erp_C PF06780.6 gi|385776228|ref|YP_005648796.1| - 0.089 12.6 0.8 0.11 12.3 0.5 1.0 1 0 0 1 1 1 0 Erp protein C-terminus FliD_N PF02465.13 gi|385776228|ref|YP_005648796.1| - 0.11 12.8 0.1 0.31 11.4 0.0 1.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DUF677 PF05055.7 gi|385776228|ref|YP_005648796.1| - 0.12 11.0 1.8 0.16 10.6 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) MttA_Hcf106 PF02416.11 gi|385776228|ref|YP_005648796.1| - 0.12 11.4 2.3 0.23 10.6 1.6 1.7 1 1 0 1 1 1 0 mttA/Hcf106 family DUF2802 PF10975.3 gi|385776228|ref|YP_005648796.1| - 0.15 11.8 1.7 0.39 10.5 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Med9 PF07544.8 gi|385776228|ref|YP_005648796.1| - 0.16 11.7 3.7 0.51 10.1 1.6 1.9 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Prefoldin_2 PF01920.15 gi|385776228|ref|YP_005648796.1| - 0.2 11.4 6.5 0.27 11.0 1.8 2.0 1 1 0 2 2 2 0 Prefoldin subunit Mnd1 PF03962.10 gi|385776228|ref|YP_005648796.1| - 0.21 11.2 2.9 0.27 10.8 2.0 1.2 1 1 0 1 1 1 0 Mnd1 family GreA_GreB_N PF03449.10 gi|385776228|ref|YP_005648796.1| - 0.26 11.3 2.8 0.21 11.6 0.5 1.8 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal HR1 PF02185.11 gi|385776228|ref|YP_005648796.1| - 0.26 11.0 3.7 0.46 10.2 2.5 1.4 1 1 0 1 1 1 0 Hr1 repeat Snapin_Pallidin PF14712.1 gi|385776228|ref|YP_005648796.1| - 0.32 11.3 3.5 1.6 9.0 2.5 1.8 1 1 0 1 1 1 0 Snapin/Pallidin TMF_TATA_bd PF12325.3 gi|385776228|ref|YP_005648796.1| - 0.44 10.2 4.6 1.3 8.7 0.8 2.0 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding TSC22 PF01166.13 gi|385776228|ref|YP_005648796.1| - 1 9.3 4.1 1.4 8.9 0.8 2.0 2 0 0 2 2 2 0 TSC-22/dip/bun family bZIP_1 PF00170.16 gi|385776228|ref|YP_005648796.1| - 1.7 8.6 9.1 0.11 12.5 1.4 2.0 2 0 0 2 2 2 0 bZIP transcription factor Spc24 PF08286.6 gi|385776228|ref|YP_005648796.1| - 1.8 8.2 4.9 1.3 8.7 0.8 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 MttA_Hcf106 PF02416.11 gi|385776229|ref|YP_005648797.1| - 3.6e-12 45.1 2.5 7.7e-12 44.1 1.8 1.7 1 1 0 1 1 1 1 mttA/Hcf106 family DUF3829 PF12889.2 gi|385776229|ref|YP_005648797.1| - 0.022 13.9 1.9 0.026 13.7 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) Blo-t-5 PF11642.3 gi|385776229|ref|YP_005648797.1| - 0.023 14.4 2.6 0.032 13.9 1.8 1.3 1 0 0 1 1 1 0 Mite allergen Blo t 5 DUF2837 PF10997.3 gi|385776229|ref|YP_005648797.1| - 0.029 13.5 0.0 0.032 13.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2837) DUF3573 PF12097.3 gi|385776229|ref|YP_005648797.1| - 0.033 12.8 1.0 0.034 12.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) Lip_A_acyltrans PF03279.8 gi|385776229|ref|YP_005648797.1| - 0.036 12.9 0.3 0.063 12.1 0.0 1.4 1 1 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase DUF3294 PF07957.6 gi|385776229|ref|YP_005648797.1| - 0.043 13.3 6.8 0.056 12.9 4.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3294) DUF4094 PF13334.1 gi|385776229|ref|YP_005648797.1| - 0.064 13.6 3.3 0.099 13.0 2.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4094) DUF4446 PF14584.1 gi|385776229|ref|YP_005648797.1| - 0.14 11.9 3.4 0.27 11.0 2.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) FliD_N PF02465.13 gi|385776229|ref|YP_005648797.1| - 0.15 12.4 5.8 0.18 12.1 4.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus DUF4140 PF13600.1 gi|385776229|ref|YP_005648797.1| - 0.29 11.5 4.5 0.38 11.2 3.1 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Prominin PF05478.6 gi|385776229|ref|YP_005648797.1| - 0.4 8.1 10.3 0.031 11.8 3.4 1.7 1 1 1 2 2 2 0 Prominin DUF2968 PF11180.3 gi|385776229|ref|YP_005648797.1| - 0.85 8.9 11.0 1.1 8.6 7.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) SlyX PF04102.7 gi|385776229|ref|YP_005648797.1| - 1.1 9.7 12.4 1.5 9.2 8.6 1.2 1 0 0 1 1 1 0 SlyX HR1 PF02185.11 gi|385776229|ref|YP_005648797.1| - 1.1 9.0 12.7 2 8.1 8.8 1.5 1 1 0 1 1 1 0 Hr1 repeat DUF4407 PF14362.1 gi|385776229|ref|YP_005648797.1| - 1.2 7.9 7.5 1.5 7.6 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Spc24 PF08286.6 gi|385776229|ref|YP_005648797.1| - 5.6 6.7 8.8 20 4.9 6.2 1.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 bZIP_2 PF07716.10 gi|385776229|ref|YP_005648797.1| - 6.1 6.7 15.2 0.76 9.6 4.0 2.1 1 1 1 2 2 2 0 Basic region leucine zipper DivIC PF04977.10 gi|385776229|ref|YP_005648797.1| - 9.3 5.8 16.7 0.079 12.4 4.6 2.2 2 1 1 3 3 3 0 Septum formation initiator HAD_2 PF13419.1 gi|385776230|ref|YP_005648798.1| - 3.7e-23 82.6 0.0 4.7e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385776230|ref|YP_005648798.1| - 3.4e-12 47.2 0.6 1.7e-10 41.6 0.4 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|385776230|ref|YP_005648798.1| - 1.6e-10 41.5 0.0 2.1e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385776230|ref|YP_005648798.1| - 3.5e-06 26.6 0.0 8e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|385776230|ref|YP_005648798.1| - 0.0024 17.7 0.1 0.62 9.9 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|385776230|ref|YP_005648798.1| - 0.0082 15.8 0.2 0.15 11.7 0.1 2.2 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.7 gi|385776230|ref|YP_005648798.1| - 0.18 11.3 1.2 3.2 7.2 0.8 2.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|385776231|ref|YP_005648799.1| - 8.8e-21 74.7 0.0 1.8e-20 73.7 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|385776231|ref|YP_005648799.1| - 1.2e-08 34.8 0.2 3.2e-08 33.4 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|385776231|ref|YP_005648799.1| - 0.023 14.6 0.0 6.8 6.6 0.0 3.3 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385776231|ref|YP_005648799.1| - 0.037 14.1 0.4 0.26 11.4 0.2 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain HobA PF12163.3 gi|385776231|ref|YP_005648799.1| - 0.13 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 DNA replication regulator Methyltransf_11 PF08241.7 gi|385776232|ref|YP_005648800.1| - 2e-21 76.2 0.0 2.8e-21 75.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385776232|ref|YP_005648800.1| - 1.8e-13 50.3 0.0 2.2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385776232|ref|YP_005648800.1| - 2e-12 47.1 0.0 2.6e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385776232|ref|YP_005648800.1| - 3.4e-10 40.1 0.1 4.9e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385776232|ref|YP_005648800.1| - 7.9e-08 32.6 0.0 1.2e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385776232|ref|YP_005648800.1| - 2.5e-07 30.0 0.0 3.8e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|385776232|ref|YP_005648800.1| - 6.8e-06 25.8 0.0 1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.7 gi|385776232|ref|YP_005648800.1| - 0.00058 19.2 0.1 0.00075 18.9 0.1 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.2 gi|385776232|ref|YP_005648800.1| - 0.002 18.7 0.2 0.006 17.1 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|385776232|ref|YP_005648800.1| - 0.0023 17.0 0.0 0.0031 16.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|385776232|ref|YP_005648800.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|385776232|ref|YP_005648800.1| - 0.055 13.0 0.1 0.15 11.5 0.1 1.7 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.6 gi|385776232|ref|YP_005648800.1| - 0.067 11.8 0.1 0.14 10.8 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) TehB PF03848.9 gi|385776232|ref|YP_005648800.1| - 0.11 11.6 0.1 0.22 10.6 0.1 1.6 1 0 0 1 1 1 0 Tellurite resistance protein TehB MTS PF05175.9 gi|385776232|ref|YP_005648800.1| - 0.16 11.2 0.7 0.89 8.9 0.5 1.9 1 1 0 1 1 1 0 Methyltransferase small domain PmbA_TldD PF01523.11 gi|385776233|ref|YP_005648801.1| - 4.3e-15 55.7 0.1 1.2e-14 54.3 0.0 1.7 1 1 1 2 2 2 1 Putative modulator of DNA gyrase Radical_SAM PF04055.16 gi|385776234|ref|YP_005648802.1| - 4.5e-21 75.7 0.0 3.7e-20 72.7 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|385776234|ref|YP_005648802.1| - 0.0002 21.2 0.0 0.00044 20.1 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain DUF790 PF05626.6 gi|385776235|ref|YP_005648803.1| - 1.8e-135 451.3 10.0 1.8e-135 451.3 6.9 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|385776236|ref|YP_005648804.1| - 3.5e-25 88.9 0.1 1e-23 84.1 0.0 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385776236|ref|YP_005648804.1| - 1.3e-17 63.4 0.0 3.3e-17 62.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385776236|ref|YP_005648804.1| - 1.1e-11 44.5 0.0 3.5e-11 42.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|385776236|ref|YP_005648804.1| - 1.4e-09 37.1 0.3 1.5e-06 27.2 0.0 3.4 1 1 1 2 2 2 2 SNF2 family N-terminal domain Helicase_C_2 PF13307.1 gi|385776236|ref|YP_005648804.1| - 0.037 13.9 0.2 0.7 9.8 0.0 2.7 3 0 0 3 3 3 0 Helicase C-terminal domain GATase_2 PF00310.16 gi|385776236|ref|YP_005648804.1| - 0.067 11.8 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II ADH_N PF08240.7 gi|385776237|ref|YP_005648805.1| - 1.1e-30 105.5 3.7 2.1e-30 104.7 0.1 2.3 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385776237|ref|YP_005648805.1| - 7.3e-30 103.1 0.8 1.3e-29 102.3 0.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385776237|ref|YP_005648805.1| - 2e-08 35.1 0.1 1e-07 32.8 0.0 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|385776237|ref|YP_005648805.1| - 0.012 14.7 0.1 0.029 13.5 0.2 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|385776237|ref|YP_005648805.1| - 0.017 15.5 1.8 0.028 14.8 1.2 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain ThiF PF00899.16 gi|385776237|ref|YP_005648805.1| - 0.031 14.0 2.4 0.031 14.0 1.6 1.7 2 0 0 2 2 2 0 ThiF family DUF131 PF01998.12 gi|385776238|ref|YP_005648806.1| - 4.2e-12 45.2 9.6 4.2e-12 45.2 6.7 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF4064 PF13273.1 gi|385776238|ref|YP_005648806.1| - 0.0047 16.9 7.1 0.0062 16.6 4.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4064) DUF3021 PF11457.3 gi|385776238|ref|YP_005648806.1| - 0.0059 16.4 5.1 0.0073 16.1 3.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3021) Adeno_E3_CR2 PF02439.10 gi|385776238|ref|YP_005648806.1| - 0.013 15.0 2.5 0.013 15.0 1.7 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 DUF872 PF05915.7 gi|385776238|ref|YP_005648806.1| - 0.021 14.6 1.6 0.021 14.6 1.1 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF4131 PF13567.1 gi|385776238|ref|YP_005648806.1| - 0.09 12.1 0.4 0.09 12.1 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) COPI_assoc PF08507.5 gi|385776238|ref|YP_005648806.1| - 0.11 12.2 0.3 0.11 12.2 0.2 2.1 1 1 1 2 2 2 0 COPI associated protein Bac_rhodopsin PF01036.13 gi|385776238|ref|YP_005648806.1| - 0.19 11.0 4.0 0.18 11.0 0.5 1.9 1 1 1 2 2 2 0 Bacteriorhodopsin-like protein HemY_N PF07219.8 gi|385776238|ref|YP_005648806.1| - 0.2 11.2 2.6 0.6 9.6 0.3 2.0 2 0 0 2 2 2 0 HemY protein N-terminus Fig1 PF12351.3 gi|385776238|ref|YP_005648806.1| - 0.38 10.6 6.8 5 6.9 1.4 2.0 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 Yip1 PF04893.12 gi|385776238|ref|YP_005648806.1| - 0.45 9.9 10.1 0.56 9.6 7.0 1.1 1 0 0 1 1 1 0 Yip1 domain DAP10 PF07213.6 gi|385776238|ref|YP_005648806.1| - 0.82 9.4 3.8 1.1 9.1 2.1 1.7 1 1 1 2 2 2 0 DAP10 membrane protein SH PF01445.12 gi|385776238|ref|YP_005648806.1| - 1.6 8.4 6.5 1.3 8.7 0.5 2.2 2 0 0 2 2 2 0 Viral small hydrophobic protein OAD_gamma PF04277.8 gi|385776238|ref|YP_005648806.1| - 1.7 9.1 7.3 6.4 7.2 2.1 2.1 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DUF3923 PF13061.1 gi|385776238|ref|YP_005648806.1| - 2.5 8.0 10.1 0.68 9.8 2.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3923) DUF3671 PF12420.3 gi|385776238|ref|YP_005648806.1| - 2.7 8.0 5.8 3.7 7.5 4.0 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF4097 PF13349.1 gi|385776238|ref|YP_005648806.1| - 4 6.9 9.9 0.34 10.4 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) ABC2_membrane_2 PF12679.2 gi|385776238|ref|YP_005648806.1| - 4.2 6.1 8.8 5.3 5.8 6.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein EphA2_TM PF14575.1 gi|385776238|ref|YP_005648806.1| - 4.5 7.7 4.8 5.8 7.3 1.6 2.0 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain PspC PF04024.7 gi|385776238|ref|YP_005648806.1| - 4.5 6.8 7.2 1.6 8.2 1.6 2.1 2 0 0 2 2 2 0 PspC domain DUF3185 PF11381.3 gi|385776238|ref|YP_005648806.1| - 5.6 6.8 11.7 0.41 10.4 0.2 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF3185) DUF2207 PF09972.4 gi|385776238|ref|YP_005648806.1| - 7.4 5.0 8.6 9.4 4.6 6.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SseB_C PF14581.1 gi|385776240|ref|YP_005648808.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain DUF87 PF01935.12 gi|385776241|ref|YP_005648809.1| - 1.9e-19 70.4 1.1 1.9e-19 70.4 0.7 2.0 1 1 1 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|385776241|ref|YP_005648809.1| - 5.4e-13 49.0 1.9 9.1e-13 48.3 1.3 1.4 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|385776241|ref|YP_005648809.1| - 6.9e-05 22.4 0.1 0.0022 17.5 0.0 2.4 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.24 gi|385776241|ref|YP_005648809.1| - 0.0073 16.5 0.2 1.3 9.2 0.0 3.1 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.7 gi|385776241|ref|YP_005648809.1| - 0.011 15.2 0.0 0.042 13.3 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|385776241|ref|YP_005648809.1| - 0.034 13.5 0.5 3.9 6.8 0.0 2.8 3 0 0 3 3 3 0 AAA domain NurA PF09376.5 gi|385776242|ref|YP_005648810.1| - 8.3e-16 58.2 2.0 7.3e-12 45.2 1.4 2.3 1 1 0 1 1 1 1 NurA domain Aldolase_2 PF10120.4 gi|385776243|ref|YP_005648811.1| - 5.7e-51 172.2 0.3 7.8e-51 171.8 0.2 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_37 PF13744.1 gi|385776243|ref|YP_005648811.1| - 0.0013 18.5 0.1 0.0036 17.0 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|385776243|ref|YP_005648811.1| - 0.0021 17.8 0.6 0.028 14.2 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_24 PF13412.1 gi|385776243|ref|YP_005648811.1| - 0.003 16.9 0.1 0.058 12.7 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF1864 PF08933.6 gi|385776243|ref|YP_005648811.1| - 0.01 14.3 0.1 0.017 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1864) MoCF_biosynth PF00994.19 gi|385776243|ref|YP_005648811.1| - 0.014 14.7 0.2 0.043 13.2 0.1 1.8 2 0 0 2 2 2 0 Probable molybdopterin binding domain HTH_38 PF13936.1 gi|385776243|ref|YP_005648811.1| - 0.026 14.0 0.0 0.089 12.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain RepB PF07506.6 gi|385776243|ref|YP_005648811.1| - 0.049 13.4 0.0 0.71 9.7 0.0 2.3 1 1 1 2 2 2 0 RepB plasmid partitioning protein Sigma70_r4_2 PF08281.7 gi|385776243|ref|YP_005648811.1| - 0.051 13.0 0.0 0.16 11.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|385776243|ref|YP_005648811.1| - 0.056 13.2 0.0 0.25 11.1 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MerR-DNA-bind PF09278.6 gi|385776243|ref|YP_005648811.1| - 0.056 13.8 0.1 0.5 10.8 0.0 2.3 2 0 0 2 2 2 0 MerR, DNA binding DUF2481 PF10654.4 gi|385776243|ref|YP_005648811.1| - 0.066 12.9 0.0 0.18 11.4 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2481) YflT PF11181.3 gi|385776243|ref|YP_005648811.1| - 0.076 13.1 0.6 0.31 11.2 0.0 2.2 3 0 0 3 3 3 0 Heat induced stress protein YflT HTH_Tnp_ISL3 PF13542.1 gi|385776243|ref|YP_005648811.1| - 0.12 11.5 0.0 0.25 10.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MMPL PF03176.10 gi|385776244|ref|YP_005648812.1| - 2.8e-49 167.6 20.5 2.7e-28 98.6 4.6 2.1 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|385776244|ref|YP_005648812.1| - 2.8 7.3 16.5 0.078 12.4 5.2 2.8 2 0 0 2 2 2 0 Sterol-sensing domain of SREBP cleavage-activation Mistic PF11458.3 gi|385776245|ref|YP_005648813.1| - 0.024 15.0 0.2 0.025 14.9 0.2 1.1 1 0 0 1 1 1 0 Membrane-integrating protein Mistic LINES_C PF14695.1 gi|385776245|ref|YP_005648813.1| - 0.33 10.2 1.4 0.99 8.7 0.0 2.3 3 0 0 3 3 3 0 Lines C-terminus Peptidase_M50 PF02163.17 gi|385776247|ref|YP_005648815.1| - 4.6e-11 42.0 16.8 2.6e-10 39.5 11.7 2.4 1 1 0 1 1 1 1 Peptidase family M50 Rhomboid PF01694.17 gi|385776248|ref|YP_005648816.1| - 5.5e-18 65.3 16.4 5.5e-18 65.3 11.3 2.0 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|385776248|ref|YP_005648816.1| - 0.011 16.0 2.6 0.011 16.0 1.8 2.9 2 1 1 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) SpoIIIAC PF06686.6 gi|385776249|ref|YP_005648817.1| - 0.31 10.8 4.4 0.42 10.4 3.0 1.3 1 1 0 1 1 1 0 Stage III sporulation protein AC/AD protein family AAA_18 PF13238.1 gi|385776250|ref|YP_005648818.1| - 1.1e-17 64.5 0.6 1.6e-17 64.0 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385776250|ref|YP_005648818.1| - 2.7e-15 57.2 0.1 5.1e-15 56.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|385776250|ref|YP_005648818.1| - 2.6e-05 23.9 0.1 0.00013 21.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SKI PF01202.17 gi|385776250|ref|YP_005648818.1| - 5.5e-05 23.0 0.3 0.00015 21.6 0.2 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|385776250|ref|YP_005648818.1| - 9.6e-05 22.6 0.2 0.00068 19.8 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|385776250|ref|YP_005648818.1| - 0.00019 20.7 0.5 0.0015 17.8 0.0 2.1 2 0 0 2 2 2 1 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|385776250|ref|YP_005648818.1| - 0.0002 21.1 1.2 0.0059 16.3 0.0 2.9 2 1 1 3 3 3 1 NTPase AAA_22 PF13401.1 gi|385776250|ref|YP_005648818.1| - 0.00081 19.5 0.3 0.0037 17.3 0.1 2.1 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|385776250|ref|YP_005648818.1| - 0.0014 17.7 0.0 0.0014 17.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|385776250|ref|YP_005648818.1| - 0.0055 16.5 0.0 0.0076 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|385776250|ref|YP_005648818.1| - 0.0094 15.8 0.2 0.021 14.7 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|385776250|ref|YP_005648818.1| - 0.0097 15.8 0.0 0.021 14.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|385776250|ref|YP_005648818.1| - 0.021 15.0 0.0 0.051 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.1 gi|385776250|ref|YP_005648818.1| - 0.024 14.3 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_3 PF07726.6 gi|385776250|ref|YP_005648818.1| - 0.032 13.8 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|385776250|ref|YP_005648818.1| - 0.036 14.0 0.0 0.041 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|385776250|ref|YP_005648818.1| - 0.051 12.6 0.1 0.15 11.1 0.1 1.9 1 1 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|385776250|ref|YP_005648818.1| - 0.066 12.8 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 NACHT domain PRK PF00485.13 gi|385776250|ref|YP_005648818.1| - 0.095 12.2 0.3 1.7 8.1 0.0 2.4 2 1 1 3 3 3 0 Phosphoribulokinase / Uridine kinase family AAA_2 PF07724.9 gi|385776250|ref|YP_005648818.1| - 0.1 12.4 1.2 0.79 9.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) ATP_bind_2 PF03668.10 gi|385776250|ref|YP_005648818.1| - 0.19 10.7 1.6 1.8 7.6 0.1 2.7 2 1 0 3 3 3 0 P-loop ATPase protein family KaiC PF06745.8 gi|385776250|ref|YP_005648818.1| - 0.22 10.5 3.8 6.5 5.8 0.3 2.5 1 1 2 3 3 3 0 KaiC AAA_26 PF13500.1 gi|385776250|ref|YP_005648818.1| - 0.26 10.8 1.5 0.93 9.0 1.0 2.1 1 1 0 1 1 1 0 AAA domain ParA PF10609.4 gi|385776251|ref|YP_005648819.1| - 1.1e-31 108.5 0.2 2.9e-31 107.1 0.0 1.8 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|385776251|ref|YP_005648819.1| - 8.1e-17 61.2 0.0 1.7e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|385776251|ref|YP_005648819.1| - 1.2e-08 34.5 0.2 0.00014 21.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|385776251|ref|YP_005648819.1| - 2e-08 34.3 0.0 8.9e-07 28.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|385776251|ref|YP_005648819.1| - 3.8e-06 26.1 0.0 7.6e-06 25.1 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|385776251|ref|YP_005648819.1| - 2e-05 23.8 2.3 7.8e-05 21.8 0.5 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_10 PF12846.2 gi|385776251|ref|YP_005648819.1| - 0.00013 21.4 0.1 0.00017 21.1 0.1 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|385776251|ref|YP_005648819.1| - 0.0002 20.8 0.0 0.0057 16.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|385776251|ref|YP_005648819.1| - 0.00067 19.3 0.0 1 8.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArgK PF03308.11 gi|385776251|ref|YP_005648819.1| - 0.00089 18.1 0.3 0.0015 17.3 0.2 1.3 1 0 0 1 1 1 1 ArgK protein DUF258 PF03193.11 gi|385776251|ref|YP_005648819.1| - 0.14 11.3 0.1 0.22 10.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DsrD PF08679.6 gi|385776252|ref|YP_005648820.1| - 0.00098 19.0 0.7 0.0012 18.7 0.1 1.5 2 0 0 2 2 2 1 Dissimilatory sulfite reductase D (DsrD) TrmB PF01978.14 gi|385776253|ref|YP_005648821.1| - 2.9e-13 49.3 0.2 7.2e-13 48.0 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385776253|ref|YP_005648821.1| - 1.5e-07 30.9 0.0 2.4e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|385776253|ref|YP_005648821.1| - 4.2e-05 23.0 0.1 5.1e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|385776253|ref|YP_005648821.1| - 0.00012 21.7 0.5 0.00018 21.1 0.0 1.5 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|385776253|ref|YP_005648821.1| - 0.00014 21.5 0.0 0.00024 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|385776253|ref|YP_005648821.1| - 0.00016 21.2 0.0 0.00032 20.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|385776253|ref|YP_005648821.1| - 0.00029 21.1 0.0 0.0005 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|385776253|ref|YP_005648821.1| - 0.00043 20.1 0.1 0.00084 19.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|385776253|ref|YP_005648821.1| - 0.00046 20.1 0.1 0.00068 19.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|385776253|ref|YP_005648821.1| - 0.00073 18.8 0.1 0.0016 17.7 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|385776253|ref|YP_005648821.1| - 0.0021 17.7 0.1 0.003 17.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.1 gi|385776253|ref|YP_005648821.1| - 0.0022 17.7 0.0 0.0038 16.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|385776253|ref|YP_005648821.1| - 0.0041 17.0 0.3 0.0077 16.1 0.2 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|385776253|ref|YP_005648821.1| - 0.0072 16.4 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.1 gi|385776253|ref|YP_005648821.1| - 0.017 14.6 0.1 0.024 14.2 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|385776253|ref|YP_005648821.1| - 0.021 14.3 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GPP34 PF05719.6 gi|385776253|ref|YP_005648821.1| - 0.023 14.7 0.0 0.026 14.5 0.0 1.1 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) HTH_36 PF13730.1 gi|385776253|ref|YP_005648821.1| - 0.024 14.7 0.1 0.088 12.9 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|385776253|ref|YP_005648821.1| - 0.03 13.9 0.0 0.073 12.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_CodY PF08222.6 gi|385776253|ref|YP_005648821.1| - 0.041 13.2 0.1 0.06 12.6 0.1 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain SgrR_N PF12793.2 gi|385776253|ref|YP_005648821.1| - 0.053 13.5 0.0 0.067 13.2 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term 5-FTHF_cyc-lig PF01812.15 gi|385776254|ref|YP_005648822.1| - 1.1e-35 123.0 0.0 1.4e-35 122.7 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family LysE PF01810.13 gi|385776255|ref|YP_005648823.1| - 3e-34 117.9 16.8 3.9e-34 117.6 11.7 1.1 1 0 0 1 1 1 1 LysE type translocator DUF3693 PF12472.3 gi|385776255|ref|YP_005648823.1| - 0.13 11.8 0.2 2.4 7.8 0.0 2.5 2 0 0 2 2 2 0 Phage related protein DUF72 PF01904.13 gi|385776256|ref|YP_005648824.1| - 3.6e-35 121.7 0.2 4.3e-35 121.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 HTH_7 PF02796.10 gi|385776257|ref|YP_005648825.1| - 2.5e-16 59.2 8.3 0.00011 21.9 0.3 3.2 3 0 0 3 3 3 3 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|385776257|ref|YP_005648825.1| - 2.8e-15 55.4 0.1 8.1e-06 25.3 0.0 3.2 2 1 1 3 3 3 3 Homeodomain-like domain HTH_28 PF13518.1 gi|385776257|ref|YP_005648825.1| - 2.2e-14 53.1 2.0 0.00038 20.3 0.0 3.1 2 1 1 3 3 3 3 Helix-turn-helix domain HTH_38 PF13936.1 gi|385776257|ref|YP_005648825.1| - 1.8e-12 46.6 7.0 0.00039 19.9 0.2 3.2 3 0 0 3 3 3 3 Helix-turn-helix domain GcrA PF07750.6 gi|385776257|ref|YP_005648825.1| - 2.2e-10 40.9 0.3 0.00051 20.2 0.0 3.0 1 1 1 3 3 3 2 GcrA cell cycle regulator GerE PF00196.14 gi|385776257|ref|YP_005648825.1| - 1.4e-09 37.1 2.1 0.029 13.6 0.1 3.2 3 0 0 3 3 3 3 Bacterial regulatory proteins, luxR family HTH_40 PF14493.1 gi|385776257|ref|YP_005648825.1| - 2.5e-09 37.2 1.5 0.0068 16.5 0.1 3.3 1 1 2 3 3 3 3 Helix-turn-helix domain Terminase_5 PF06056.7 gi|385776257|ref|YP_005648825.1| - 1.2e-08 34.3 1.6 0.041 13.4 0.0 3.2 3 0 0 3 3 3 2 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.1 gi|385776257|ref|YP_005648825.1| - 7.5e-08 31.6 0.5 0.12 11.7 0.0 3.4 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|385776257|ref|YP_005648825.1| - 2.8e-07 29.9 0.7 0.00091 18.6 0.1 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|385776257|ref|YP_005648825.1| - 1.7e-06 28.1 0.2 0.087 12.9 0.0 3.0 2 1 1 3 3 3 2 Winged helix-turn helix Recombinase PF07508.8 gi|385776257|ref|YP_005648825.1| - 2.7e-06 27.5 6.4 0.069 13.3 0.1 3.7 2 1 1 3 3 3 2 Recombinase HTH_Tnp_1 PF01527.15 gi|385776257|ref|YP_005648825.1| - 4.7e-06 26.4 0.9 0.27 11.2 0.1 3.1 2 1 1 3 3 3 1 Transposase HTH_Tnp_IS630 PF01710.11 gi|385776257|ref|YP_005648825.1| - 5.8e-06 25.9 2.6 5.8e-06 25.9 1.8 1.9 1 1 1 2 2 2 1 Transposase HTH_10 PF04967.7 gi|385776257|ref|YP_005648825.1| - 6.6e-06 25.6 0.1 0.05 13.1 0.0 3.2 3 0 0 3 3 3 1 HTH DNA binding domain IF2_N PF04760.10 gi|385776257|ref|YP_005648825.1| - 6.7e-06 25.6 7.9 0.018 14.6 0.1 4.1 1 1 3 4 4 4 2 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.7 gi|385776257|ref|YP_005648825.1| - 1.1e-05 25.0 2.3 0.8 9.4 0.0 3.2 3 0 0 3 3 3 1 HTH domain HTH_Tnp_IS1 PF12759.2 gi|385776257|ref|YP_005648825.1| - 1.8e-05 24.0 0.2 0.043 13.2 0.0 2.8 3 0 0 3 3 3 1 InsA C-terminal domain Sigma70_r4 PF04545.11 gi|385776257|ref|YP_005648825.1| - 2.2e-05 23.6 2.9 0.00082 18.6 0.5 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|385776257|ref|YP_005648825.1| - 2.9e-05 23.1 0.0 0.043 12.9 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 DUF2316 PF10078.4 gi|385776257|ref|YP_005648825.1| - 9.5e-05 22.3 0.2 0.87 9.6 0.0 3.2 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2316) HTH_6 PF01418.12 gi|385776257|ref|YP_005648825.1| - 0.00012 21.7 0.3 1 9.1 0.0 3.3 2 1 1 3 3 3 1 Helix-turn-helix domain, rpiR family PAX PF00292.13 gi|385776257|ref|YP_005648825.1| - 0.0002 21.0 0.3 0.0078 15.9 0.0 2.5 1 1 2 3 3 3 1 'Paired box' domain Sigma70_ECF PF07638.6 gi|385776257|ref|YP_005648825.1| - 0.00029 20.5 0.4 0.14 11.8 0.1 2.9 1 1 2 3 3 3 1 ECF sigma factor HTH_5 PF01022.15 gi|385776257|ref|YP_005648825.1| - 0.00052 19.6 0.0 1.2 8.8 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family EAP30 PF04157.11 gi|385776257|ref|YP_005648825.1| - 0.00078 18.6 0.3 0.81 8.8 0.1 2.2 2 0 0 2 2 2 2 EAP30/Vps36 family Phage_terminase PF10668.4 gi|385776257|ref|YP_005648825.1| - 0.00078 19.1 3.5 0.88 9.3 0.2 3.0 2 1 1 3 3 3 2 Phage terminase small subunit HTH_3 PF01381.17 gi|385776257|ref|YP_005648825.1| - 0.0011 18.7 4.6 2.3 8.1 0.3 3.3 2 1 1 3 3 3 1 Helix-turn-helix TrmB PF01978.14 gi|385776257|ref|YP_005648825.1| - 0.0015 18.1 0.8 1.6 8.4 0.0 3.6 3 1 1 4 4 3 1 Sugar-specific transcriptional regulator TrmB HTH_25 PF13413.1 gi|385776257|ref|YP_005648825.1| - 0.0029 17.1 0.2 2 8.1 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain DUF3791 PF12668.2 gi|385776257|ref|YP_005648825.1| - 0.003 17.1 4.8 5.7 6.6 0.1 3.9 3 1 1 4 4 4 0 Protein of unknown function (DUF3791) NUMOD1 PF07453.8 gi|385776257|ref|YP_005648825.1| - 0.0031 17.2 2.4 0.24 11.3 0.2 3.2 3 0 0 3 3 3 1 NUMOD1 domain HTH_32 PF13565.1 gi|385776257|ref|YP_005648825.1| - 0.0033 18.1 1.0 0.25 12.1 0.1 2.6 3 0 0 3 3 2 1 Homeodomain-like domain DUF1699 PF08004.6 gi|385776257|ref|YP_005648825.1| - 0.0036 16.8 7.3 1.9 8.0 0.0 3.1 2 1 1 3 3 3 1 Protein of unknown function (DUF1699) HTH_26 PF13443.1 gi|385776257|ref|YP_005648825.1| - 0.0046 17.1 1.9 5.3 7.3 0.1 3.1 2 1 1 3 3 3 0 Cro/C1-type HTH DNA-binding domain Phage_antitermQ PF06530.7 gi|385776257|ref|YP_005648825.1| - 0.0047 16.4 2.7 0.41 10.2 0.1 2.3 1 1 0 2 2 2 1 Phage antitermination protein Q RPA_C PF08784.6 gi|385776257|ref|YP_005648825.1| - 0.0052 17.1 0.2 1.2 9.6 0.0 3.0 1 1 1 3 3 3 1 Replication protein A C terminal FeoC PF09012.5 gi|385776257|ref|YP_005648825.1| - 0.0075 15.9 0.1 2.2 8.0 0.0 3.1 3 0 0 3 3 3 1 FeoC like transcriptional regulator CPSase_L_D3 PF02787.14 gi|385776257|ref|YP_005648825.1| - 0.0076 16.0 3.5 1.3 8.7 0.1 2.4 1 1 1 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ANT PF03374.9 gi|385776257|ref|YP_005648825.1| - 0.0084 16.1 0.1 0.15 12.1 0.1 2.2 2 0 0 2 2 2 1 Phage antirepressor protein KilAC domain HTH_30 PF13556.1 gi|385776257|ref|YP_005648825.1| - 0.0099 15.4 0.0 5.5 6.6 0.0 3.1 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain Cadherin_2 PF08266.7 gi|385776257|ref|YP_005648825.1| - 0.018 14.6 0.1 1.3 8.6 0.0 2.9 3 0 0 3 3 3 0 Cadherin-like HTH_IclR PF09339.5 gi|385776257|ref|YP_005648825.1| - 0.023 14.2 0.0 0.052 13.1 0.0 1.5 2 0 0 2 2 1 0 IclR helix-turn-helix domain Homeobox PF00046.24 gi|385776257|ref|YP_005648825.1| - 0.026 14.1 2.0 5.4 6.7 0.0 3.3 2 1 2 4 4 3 0 Homeobox domain CENP-B_N PF04218.8 gi|385776257|ref|YP_005648825.1| - 0.059 12.7 9.2 1.3 8.5 0.1 3.2 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain Trp_repressor PF01371.14 gi|385776257|ref|YP_005648825.1| - 0.078 12.9 3.3 2.9 7.8 0.1 3.0 1 1 2 3 3 3 0 Trp repressor protein HTH_AsnC-type PF13404.1 gi|385776257|ref|YP_005648825.1| - 0.08 12.4 0.0 3 7.4 0.0 3.1 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|385776257|ref|YP_005648825.1| - 0.081 12.6 0.0 8.6 6.1 0.0 2.6 3 0 0 3 3 2 0 MarR family MerR_1 PF13411.1 gi|385776257|ref|YP_005648825.1| - 0.089 12.5 8.6 1.7 8.4 0.1 3.8 3 1 1 4 4 4 0 MerR HTH family regulatory protein Ribosomal_S2 PF00318.15 gi|385776257|ref|YP_005648825.1| - 0.11 11.7 5.1 0.12 11.5 3.5 1.1 1 0 0 1 1 1 0 Ribosomal protein S2 HTH_22 PF13309.1 gi|385776257|ref|YP_005648825.1| - 0.11 12.2 3.9 7.5 6.3 0.2 3.6 3 3 0 3 3 3 0 HTH domain Ribosomal_S13_N PF08069.7 gi|385776257|ref|YP_005648825.1| - 0.12 12.1 4.7 1.5 8.7 0.1 3.0 4 0 0 4 4 2 0 Ribosomal S13/S15 N-terminal domain MRP-L20 PF12824.2 gi|385776257|ref|YP_005648825.1| - 0.13 12.2 0.4 0.46 10.4 0.3 1.8 1 1 1 2 2 2 0 Mitochondrial ribosomal protein subunit L20 Ribosomal_S13 PF00416.17 gi|385776257|ref|YP_005648825.1| - 0.13 12.7 5.1 0.057 13.8 0.9 2.1 1 1 1 2 2 2 0 Ribosomal protein S13/S18 HTH_18 PF12833.2 gi|385776257|ref|YP_005648825.1| - 0.13 12.3 0.0 4.8 7.3 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|385776257|ref|YP_005648825.1| - 0.15 11.9 0.5 2.3 8.1 0.0 2.6 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.9 gi|385776257|ref|YP_005648825.1| - 0.15 12.0 3.5 5.4 7.1 0.2 2.9 2 1 1 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like DUF3452 PF11934.3 gi|385776257|ref|YP_005648825.1| - 0.18 11.1 0.8 0.98 8.7 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3452) Rho_N PF07498.7 gi|385776257|ref|YP_005648825.1| - 0.21 11.3 2.4 15 5.4 0.0 3.2 4 0 0 4 4 2 0 Rho termination factor, N-terminal domain HTH_17 PF12728.2 gi|385776257|ref|YP_005648825.1| - 0.36 11.1 4.1 1.3 9.2 0.1 2.8 1 1 2 3 3 2 0 Helix-turn-helix domain TBCA PF02970.11 gi|385776257|ref|YP_005648825.1| - 0.41 10.7 4.2 0.2 11.7 0.7 2.0 2 0 0 2 2 2 0 Tubulin binding cofactor A DUF2089 PF09862.4 gi|385776257|ref|YP_005648825.1| - 0.44 10.3 4.4 3.3 7.5 0.1 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) tRNA-synt_1b PF00579.20 gi|385776258|ref|YP_005648826.1| - 3.1e-27 95.4 0.0 4.7e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Snf7 PF03357.16 gi|385776259|ref|YP_005648827.1| - 0.00058 19.2 0.3 0.00067 19.0 0.2 1.3 1 0 0 1 1 1 1 Snf7 DUF1796 PF08795.5 gi|385776259|ref|YP_005648827.1| - 0.0019 17.8 0.6 0.025 14.1 0.4 2.1 1 1 0 1 1 1 1 Putative papain-like cysteine peptidase (DUF1796) LOH1CR12 PF10158.4 gi|385776259|ref|YP_005648827.1| - 0.0067 16.2 1.1 0.013 15.2 0.8 1.5 1 1 0 1 1 1 1 Tumour suppressor protein DUF3958 PF13125.1 gi|385776259|ref|YP_005648827.1| - 0.047 13.5 0.1 0.097 12.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3958) NHL PF01436.16 gi|385776260|ref|YP_005648828.1| - 0.00013 21.7 0.3 0.00025 20.8 0.2 1.5 1 0 0 1 1 1 1 NHL repeat tRNA-synt_2c PF01411.14 gi|385776261|ref|YP_005648829.1| - 1.1e-13 50.3 0.1 1.6e-13 49.8 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|385776261|ref|YP_005648829.1| - 4.3e-13 48.9 0.3 1.7e-12 47.0 0.1 2.0 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DPM2 PF07297.7 gi|385776261|ref|YP_005648829.1| - 0.1 12.8 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) GtrA PF04138.9 gi|385776262|ref|YP_005648830.1| - 5.1e-21 74.8 14.6 8e-21 74.1 10.1 1.3 1 0 0 1 1 1 1 GtrA-like protein MHYT PF03707.11 gi|385776262|ref|YP_005648830.1| - 7.7 6.7 8.1 4 7.6 1.4 2.4 2 1 0 2 2 2 0 Bacterial signalling protein N terminal repeat Aminotran_1_2 PF00155.16 gi|385776263|ref|YP_005648831.1| - 1.3e-14 53.9 0.0 7.1e-14 51.5 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II FATC PF02260.15 gi|385776263|ref|YP_005648831.1| - 0.023 14.1 0.0 0.14 11.6 0.0 2.3 2 0 0 2 2 2 0 FATC domain HTH_10 PF04967.7 gi|385776264|ref|YP_005648832.1| - 1.8e-21 75.4 0.1 3e-21 74.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|385776264|ref|YP_005648832.1| - 0.00027 20.2 0.1 0.0008 18.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385776264|ref|YP_005648832.1| - 0.00098 19.3 0.0 0.0058 16.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|385776264|ref|YP_005648832.1| - 0.0013 18.3 0.1 0.003 17.2 0.1 1.7 1 1 0 1 1 1 1 MarR family MarR PF01047.17 gi|385776264|ref|YP_005648832.1| - 0.0018 17.9 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Mga PF08280.6 gi|385776264|ref|YP_005648832.1| - 0.0024 17.5 0.0 0.027 14.2 0.0 2.4 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|385776264|ref|YP_005648832.1| - 0.0037 17.1 0.0 0.0072 16.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_3 PF01381.17 gi|385776264|ref|YP_005648832.1| - 0.0043 16.8 0.0 0.0098 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_18 PF12833.2 gi|385776264|ref|YP_005648832.1| - 0.029 14.4 0.0 2.2 8.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|385776264|ref|YP_005648832.1| - 0.058 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|385776264|ref|YP_005648832.1| - 0.064 13.1 0.0 1.2 9.0 0.0 2.3 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_1 PF00126.22 gi|385776264|ref|YP_005648832.1| - 0.075 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TFIIB PF00382.14 gi|385776265|ref|YP_005648833.1| - 1.5e-40 136.8 5.3 2e-20 72.3 0.6 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385776265|ref|YP_005648833.1| - 3.9e-15 54.8 0.1 8.2e-15 53.8 0.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.1 gi|385776265|ref|YP_005648833.1| - 9.3e-06 25.0 0.2 0.00015 21.2 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385776265|ref|YP_005648833.1| - 2.2e-05 23.6 1.3 0.00062 19.0 0.2 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 Cyclin_C PF02984.14 gi|385776265|ref|YP_005648833.1| - 2.9e-05 23.9 0.0 0.016 15.1 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain HTH_24 PF13412.1 gi|385776265|ref|YP_005648833.1| - 0.00038 19.7 1.2 0.0019 17.5 0.0 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|385776265|ref|YP_005648833.1| - 0.00045 19.6 0.2 0.0078 15.6 0.0 2.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|385776265|ref|YP_005648833.1| - 0.0029 16.7 2.2 0.12 11.5 0.1 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|385776265|ref|YP_005648833.1| - 0.0041 16.7 0.1 0.014 15.0 0.1 1.9 1 0 0 1 1 1 1 HTH domain Cyclin_N PF00134.18 gi|385776265|ref|YP_005648833.1| - 0.0075 15.8 0.1 1.2 8.7 0.1 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain HTH_23 PF13384.1 gi|385776265|ref|YP_005648833.1| - 0.016 14.8 0.1 0.016 14.8 0.1 3.2 4 0 0 4 4 4 0 Homeodomain-like domain HTH_37 PF13744.1 gi|385776265|ref|YP_005648833.1| - 0.027 14.2 0.2 0.87 9.4 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain DUF3562 PF12085.3 gi|385776265|ref|YP_005648833.1| - 0.033 13.9 0.6 1.2 9.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) HTH_Crp_2 PF13545.1 gi|385776265|ref|YP_005648833.1| - 0.46 10.3 4.6 2 8.2 0.1 3.2 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain SUI1 PF01253.17 gi|385776266|ref|YP_005648834.1| - 2.1e-24 85.1 3.0 2.4e-24 84.9 2.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 P-mevalo_kinase PF04275.9 gi|385776266|ref|YP_005648834.1| - 0.034 13.8 0.1 0.044 13.5 0.1 1.2 1 0 0 1 1 1 0 Phosphomevalonate kinase Img2 PF05046.9 gi|385776266|ref|YP_005648834.1| - 0.15 12.3 1.1 0.22 11.7 0.8 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DNA_RNApol_7kD PF03604.8 gi|385776267|ref|YP_005648835.1| - 6.6e-06 25.4 1.9 1.3e-05 24.5 1.3 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF2072 PF09845.4 gi|385776267|ref|YP_005648835.1| - 0.00054 19.8 0.4 0.00055 19.8 0.3 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zf-C2H2 PF00096.21 gi|385776267|ref|YP_005648835.1| - 0.0021 18.2 3.7 0.11 12.8 0.3 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.1 gi|385776267|ref|YP_005648835.1| - 0.01 15.3 1.7 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Baculo_IE-1 PF05290.6 gi|385776267|ref|YP_005648835.1| - 0.016 14.9 0.4 0.017 14.8 0.3 1.1 1 0 0 1 1 1 0 Baculovirus immediate-early protein (IE-0) zinc_ribbon_4 PF13717.1 gi|385776267|ref|YP_005648835.1| - 0.018 14.7 1.7 2.1 8.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385776267|ref|YP_005648835.1| - 0.03 14.2 2.6 0.08 12.9 1.8 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385776267|ref|YP_005648835.1| - 0.031 14.1 1.8 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|385776267|ref|YP_005648835.1| - 0.031 14.5 1.6 0.9 9.8 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_2 PF13240.1 gi|385776267|ref|YP_005648835.1| - 0.049 13.1 0.1 0.049 13.1 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|385776267|ref|YP_005648835.1| - 0.051 13.2 0.1 0.052 13.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|385776267|ref|YP_005648835.1| - 0.061 12.5 0.3 0.061 12.5 0.2 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|385776267|ref|YP_005648835.1| - 0.084 11.9 0.9 0.14 11.2 0.6 1.4 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-H2C2_2 PF13465.1 gi|385776267|ref|YP_005648835.1| - 0.092 13.0 3.0 1.7 9.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-CHY PF05495.7 gi|385776267|ref|YP_005648835.1| - 0.1 12.7 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 CHY zinc finger zf-ISL3 PF14690.1 gi|385776267|ref|YP_005648835.1| - 0.1 12.6 2.0 0.21 11.6 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.17 gi|385776267|ref|YP_005648835.1| - 0.18 11.5 0.9 0.25 11.1 0.6 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Cys_rich_CPXG PF14255.1 gi|385776267|ref|YP_005648835.1| - 0.26 11.1 1.5 0.38 10.5 0.1 1.8 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-C2H2_4 PF13894.1 gi|385776267|ref|YP_005648835.1| - 0.3 11.5 2.3 5.9 7.4 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_6 PF13912.1 gi|385776267|ref|YP_005648835.1| - 0.34 10.8 0.1 0.34 10.8 0.1 1.9 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RING_5 PF14634.1 gi|385776267|ref|YP_005648835.1| - 0.45 10.2 2.4 1.9 8.2 0.0 2.0 1 1 0 1 1 1 0 zinc-RING finger domain zf-BED PF02892.10 gi|385776267|ref|YP_005648835.1| - 0.65 9.7 4.4 0.5 10.1 1.3 1.8 1 1 1 2 2 2 0 BED zinc finger UPF0547 PF10571.4 gi|385776267|ref|YP_005648835.1| - 1.4 8.6 4.8 0.61 9.8 0.7 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|385776267|ref|YP_005648835.1| - 3.4 7.6 6.2 19 5.2 1.0 2.1 1 1 1 2 2 2 0 Rubredoxin Arginase PF00491.16 gi|385776268|ref|YP_005648836.1| - 8.6e-75 251.5 0.0 9.7e-75 251.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family HMGL-like PF00682.14 gi|385776268|ref|YP_005648836.1| - 0.068 12.8 0.0 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 HMGL-like tRNA-synt_2b PF00587.20 gi|385776269|ref|YP_005648837.1| - 2.4e-49 167.2 0.3 4.8e-49 166.2 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|385776269|ref|YP_005648837.1| - 4.4e-19 68.2 0.1 1.1e-18 66.8 0.1 1.8 1 0 0 1 1 1 1 Anticodon binding domain DNA_RNApol_7kD PF03604.8 gi|385776269|ref|YP_005648837.1| - 0.98 8.9 4.5 0.26 10.7 0.3 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Molydop_binding PF01568.16 gi|385776270|ref|YP_005648838.1| - 8.3e-06 25.5 0.1 0.044 13.5 0.0 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|385776270|ref|YP_005648838.1| - 0.1 12.5 0.2 0.27 11.2 0.1 1.8 1 1 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain HGTP_anticodon PF03129.15 gi|385776271|ref|YP_005648839.1| - 0.033 14.1 1.2 0.79 9.7 0.2 2.1 1 1 1 2 2 2 0 Anticodon binding domain Nuc_rec_co-act PF08815.5 gi|385776271|ref|YP_005648839.1| - 0.11 12.0 0.2 0.29 10.6 0.2 1.7 1 0 0 1 1 1 0 Nuclear receptor coactivator PhoU_div PF01865.11 gi|385776272|ref|YP_005648840.1| - 6.5e-06 25.4 10.9 0.00035 19.8 2.7 2.2 1 1 1 2 2 2 2 Protein of unknown function DUF47 Zn_protease PF05618.6 gi|385776272|ref|YP_005648840.1| - 0.0036 17.0 0.1 0.0062 16.2 0.1 1.4 1 0 0 1 1 1 1 Putative ATP-dependant zinc protease TSCPD PF12637.2 gi|385776272|ref|YP_005648840.1| - 0.005 16.7 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 TSCPD domain PhoU PF01895.14 gi|385776272|ref|YP_005648840.1| - 0.026 14.9 3.8 0.026 14.9 2.6 3.1 1 1 2 3 3 3 0 PhoU domain tRNA_int_endo PF01974.12 gi|385776273|ref|YP_005648841.1| - 5.1e-27 93.4 0.5 8.7e-27 92.7 0.1 1.6 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|385776273|ref|YP_005648841.1| - 8e-18 63.7 0.1 6.7e-17 60.8 0.1 2.0 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain Fer4_18 PF13746.1 gi|385776274|ref|YP_005648842.1| - 0.56 10.6 5.3 9.2 6.7 3.6 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Flavoprotein PF02441.14 gi|385776275|ref|YP_005648843.1| - 7.5e-26 90.3 0.2 1.2e-25 89.6 0.1 1.3 1 0 0 1 1 1 1 Flavoprotein CoA_binding PF02629.14 gi|385776275|ref|YP_005648843.1| - 0.078 13.4 0.2 0.28 11.7 0.0 1.9 2 0 0 2 2 2 0 CoA binding domain Thi4 PF01946.12 gi|385776276|ref|YP_005648844.1| - 3.4e-88 294.6 3.0 4e-88 294.3 2.0 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|385776276|ref|YP_005648844.1| - 1.7e-15 56.8 3.7 1.1e-09 37.7 0.4 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|385776276|ref|YP_005648844.1| - 1.2e-10 41.0 2.5 1.6e-10 40.6 1.8 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385776276|ref|YP_005648844.1| - 3.4e-10 39.3 8.1 1.5e-06 27.3 0.9 3.0 3 0 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.1 gi|385776276|ref|YP_005648844.1| - 4.4e-10 39.4 0.9 1.1e-09 38.1 0.5 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|385776276|ref|YP_005648844.1| - 8.6e-07 28.3 0.0 1.4e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|385776276|ref|YP_005648844.1| - 9.5e-07 29.0 0.4 3.5e-06 27.2 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385776276|ref|YP_005648844.1| - 1.1e-06 28.7 1.3 1.6e-06 28.1 0.9 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385776276|ref|YP_005648844.1| - 1e-05 24.2 0.2 1.3e-05 23.8 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|385776276|ref|YP_005648844.1| - 3.4e-05 22.8 0.6 7.5e-05 21.7 0.4 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|385776276|ref|YP_005648844.1| - 0.00022 21.5 1.0 0.0012 19.1 0.4 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|385776276|ref|YP_005648844.1| - 0.00061 18.9 0.1 0.00093 18.3 0.1 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|385776276|ref|YP_005648844.1| - 0.0011 18.0 0.4 0.0034 16.3 0.2 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein ThiF PF00899.16 gi|385776276|ref|YP_005648844.1| - 0.0081 15.9 0.8 0.025 14.4 0.0 2.1 2 1 0 2 2 2 1 ThiF family NAD_binding_9 PF13454.1 gi|385776276|ref|YP_005648844.1| - 0.013 15.2 0.5 0.051 13.3 0.1 2.2 2 1 0 2 2 2 0 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|385776276|ref|YP_005648844.1| - 0.02 13.8 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|385776276|ref|YP_005648844.1| - 0.065 11.8 3.2 0.33 9.5 0.5 2.2 2 1 0 2 2 2 0 Tryptophan halogenase Shikimate_DH PF01488.15 gi|385776276|ref|YP_005648844.1| - 0.071 13.2 0.0 0.27 11.3 0.0 2.0 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GMC_oxred_N PF00732.14 gi|385776276|ref|YP_005648844.1| - 0.12 11.5 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase CoA_binding PF02629.14 gi|385776276|ref|YP_005648844.1| - 1.3 9.6 4.4 10 6.7 0.5 3.0 2 1 0 2 2 2 0 CoA binding domain Ribosomal_S24e PF01282.14 gi|385776277|ref|YP_005648845.1| - 2e-17 62.7 0.1 2.7e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e Flag1_repress PF03614.8 gi|385776277|ref|YP_005648845.1| - 0.092 12.2 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Repressor of phase-1 flagellin Ribosomal_S27 PF01599.14 gi|385776278|ref|YP_005648846.1| - 5.8e-11 42.0 1.8 8.2e-11 41.5 1.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|385776278|ref|YP_005648846.1| - 5.9e-05 22.7 2.5 7.1e-05 22.5 1.7 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385776278|ref|YP_005648846.1| - 0.00014 21.4 1.0 0.00017 21.2 0.7 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|385776278|ref|YP_005648846.1| - 0.0019 18.0 1.0 0.0021 17.8 0.7 1.1 1 0 0 1 1 1 1 IBR domain FAM72 PF14976.1 gi|385776278|ref|YP_005648846.1| - 0.0038 17.0 0.4 0.0042 16.9 0.3 1.1 1 0 0 1 1 1 1 FAM72 protein DZR PF12773.2 gi|385776278|ref|YP_005648846.1| - 0.0043 16.8 0.7 0.0067 16.2 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|385776278|ref|YP_005648846.1| - 0.0095 15.5 0.3 0.018 14.7 0.2 1.5 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit GFA PF04828.9 gi|385776278|ref|YP_005648846.1| - 0.016 15.1 1.6 0.36 10.7 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|385776278|ref|YP_005648846.1| - 0.023 13.9 3.3 0.28 10.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.1 gi|385776278|ref|YP_005648846.1| - 0.032 13.5 3.4 0.062 12.6 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF2082 PF09855.4 gi|385776278|ref|YP_005648846.1| - 0.041 13.7 3.7 0.16 11.8 0.2 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0179 PF03684.8 gi|385776278|ref|YP_005648846.1| - 0.043 13.3 0.2 0.044 13.3 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0179) DUF2387 PF09526.5 gi|385776278|ref|YP_005648846.1| - 0.05 13.5 0.3 0.082 12.8 0.2 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Ribosomal_L37e PF01907.14 gi|385776278|ref|YP_005648846.1| - 0.066 13.0 2.6 0.098 12.4 1.8 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e SprT-like PF10263.4 gi|385776278|ref|YP_005648846.1| - 0.071 12.7 0.7 0.072 12.7 0.5 1.1 1 0 0 1 1 1 0 SprT-like family Nudix_N_2 PF14803.1 gi|385776278|ref|YP_005648846.1| - 0.075 12.7 2.2 0.21 11.3 1.5 1.7 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|385776278|ref|YP_005648846.1| - 0.096 12.6 1.1 1.7 8.6 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain FlhC PF05280.6 gi|385776278|ref|YP_005648846.1| - 0.099 12.0 0.1 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) A2L_zn_ribbon PF08792.5 gi|385776278|ref|YP_005648846.1| - 0.1 12.0 1.0 2.7 7.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|385776278|ref|YP_005648846.1| - 0.15 11.7 0.2 0.15 11.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|385776278|ref|YP_005648846.1| - 0.16 11.4 3.8 0.93 9.0 1.9 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|385776278|ref|YP_005648846.1| - 0.17 11.5 1.6 5.2 6.7 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) YhfH PF14149.1 gi|385776278|ref|YP_005648846.1| - 0.18 11.6 0.3 0.18 11.6 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-ISL3 PF14690.1 gi|385776278|ref|YP_005648846.1| - 0.2 11.6 6.1 0.74 9.9 0.4 2.5 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ADK_lid PF05191.9 gi|385776278|ref|YP_005648846.1| - 0.24 11.0 2.2 5 6.8 0.3 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|385776278|ref|YP_005648846.1| - 0.42 10.1 7.9 0.32 10.5 0.4 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|385776278|ref|YP_005648846.1| - 0.51 9.4 4.5 2.1 7.5 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-NADH-PPase PF09297.6 gi|385776278|ref|YP_005648846.1| - 0.62 9.6 4.6 2.5 7.6 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.7 gi|385776278|ref|YP_005648846.1| - 0.65 9.8 5.0 3 7.6 3.7 1.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.7 gi|385776278|ref|YP_005648846.1| - 2 7.7 5.3 15 5.0 3.7 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|385776278|ref|YP_005648846.1| - 2.7 8.3 7.3 4.1 7.7 3.5 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain FeS PF04060.8 gi|385776278|ref|YP_005648846.1| - 2.7 7.6 4.9 1.1 8.8 0.3 2.2 2 0 0 2 2 2 0 Putative Fe-S cluster Rubredoxin PF00301.15 gi|385776278|ref|YP_005648846.1| - 3.9 7.4 6.2 6.8 6.6 0.4 2.3 1 1 1 2 2 2 0 Rubredoxin Peptidase_M22 PF00814.20 gi|385776279|ref|YP_005648847.1| - 1.4e-73 247.7 0.0 1.7e-73 247.4 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|385776279|ref|YP_005648847.1| - 0.0016 17.6 0.0 0.0021 17.2 0.0 1.1 1 0 0 1 1 1 1 Carbamoyltransferase CheX PF13690.1 gi|385776279|ref|YP_005648847.1| - 0.023 14.5 0.0 0.25 11.2 0.0 2.4 2 1 0 2 2 2 0 Chemotaxis phosphatase CheX Pkinase PF00069.20 gi|385776280|ref|YP_005648848.1| - 3.4e-10 39.5 0.2 4.5e-10 39.1 0.1 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|385776280|ref|YP_005648848.1| - 2.8e-07 29.8 0.0 3.4e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.18 gi|385776280|ref|YP_005648848.1| - 4.3e-07 29.9 0.0 0.01 15.5 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|385776280|ref|YP_005648848.1| - 4.7e-07 29.0 0.0 6.7e-07 28.5 0.0 1.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.17 gi|385776280|ref|YP_005648848.1| - 3.6e-06 26.4 0.0 5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family WaaY PF06176.6 gi|385776280|ref|YP_005648848.1| - 1e-05 24.8 1.3 1.3e-05 24.5 0.9 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.15 gi|385776280|ref|YP_005648848.1| - 0.00017 21.2 0.1 0.00035 20.2 0.0 1.4 1 1 0 1 1 1 1 Choline/ethanolamine kinase EcKinase PF02958.15 gi|385776280|ref|YP_005648848.1| - 0.0092 15.1 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase Ham1p_like PF01725.11 gi|385776281|ref|YP_005648849.1| - 1.5e-49 167.9 0.1 1.8e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF903 PF06004.7 gi|385776281|ref|YP_005648849.1| - 0.074 12.5 0.9 1.3 8.5 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) Aldo_ket_red PF00248.16 gi|385776282|ref|YP_005648850.1| - 1.4e-44 152.0 0.1 1.9e-44 151.6 0.1 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family PCEMA1 PF07418.6 gi|385776283|ref|YP_005648851.1| - 0.1 11.9 1.8 0.13 11.6 1.2 1.0 1 0 0 1 1 1 0 Acidic phosphoprotein precursor PCEMA1 vATP-synt_AC39 PF01992.11 gi|385776284|ref|YP_005648852.1| - 2.5e-05 23.5 7.9 6.7e-05 22.1 5.5 1.8 1 1 0 1 1 1 1 ATP synthase (C/AC39) subunit Phage_GP20 PF06810.6 gi|385776284|ref|YP_005648852.1| - 0.019 14.3 0.1 0.94 8.9 0.0 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 LAGLIDADG_1 PF00961.14 gi|385776284|ref|YP_005648852.1| - 1.3 9.6 9.6 0.12 12.8 1.9 2.7 1 1 1 2 2 2 0 LAGLIDADG endonuclease Muted PF14942.1 gi|385776285|ref|YP_005648853.1| - 0.0023 17.7 5.2 0.003 17.4 3.6 1.1 1 0 0 1 1 1 1 Organelle biogenesis, Muted-like protein Sec15 PF04091.7 gi|385776285|ref|YP_005648853.1| - 0.003 16.9 2.3 0.0032 16.8 0.6 1.6 1 1 1 2 2 2 1 Exocyst complex subunit Sec15-like CHASE3 PF05227.8 gi|385776285|ref|YP_005648853.1| - 0.019 14.6 4.2 0.028 14.0 2.9 1.3 1 0 0 1 1 1 0 CHASE3 domain DUF3435 PF11917.3 gi|385776285|ref|YP_005648853.1| - 0.027 13.2 3.9 0.032 12.9 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Apolipoprotein PF01442.13 gi|385776285|ref|YP_005648853.1| - 0.048 13.1 5.3 0.068 12.6 3.7 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain HrpE PF06188.7 gi|385776285|ref|YP_005648853.1| - 0.051 13.3 0.8 0.06 13.0 0.6 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|385776285|ref|YP_005648853.1| - 0.06 12.5 13.8 0.16 11.1 9.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) V-ATPase_G PF03179.10 gi|385776285|ref|YP_005648853.1| - 0.087 13.1 9.4 1.3 9.3 6.5 2.2 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit RHH_1 PF01402.16 gi|385776285|ref|YP_005648853.1| - 0.093 12.6 3.4 3.6 7.6 0.1 3.4 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family Ribosomal_L22 PF00237.14 gi|385776285|ref|YP_005648853.1| - 0.13 12.2 0.7 0.47 10.4 0.1 1.9 1 1 1 2 2 2 0 Ribosomal protein L22p/L17e Exonuc_VII_L PF02601.10 gi|385776285|ref|YP_005648853.1| - 0.13 11.4 3.9 0.14 11.3 2.7 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF2624 PF11116.3 gi|385776285|ref|YP_005648853.1| - 0.14 12.6 3.2 0.37 11.3 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2624) KorB PF08535.5 gi|385776285|ref|YP_005648853.1| - 0.15 12.1 2.2 0.24 11.5 0.9 1.9 1 1 1 2 2 2 0 KorB domain DUF883 PF05957.8 gi|385776285|ref|YP_005648853.1| - 0.16 12.4 7.0 1.5 9.2 1.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Peptidase_S46 PF10459.4 gi|385776285|ref|YP_005648853.1| - 0.19 10.0 4.7 0.22 9.8 3.3 1.0 1 0 0 1 1 1 0 Peptidase S46 ISG65-75 PF11727.3 gi|385776285|ref|YP_005648853.1| - 0.2 10.6 5.1 0.24 10.4 3.6 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein OmpH PF03938.9 gi|385776285|ref|YP_005648853.1| - 0.25 11.2 6.0 0.32 10.9 4.1 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2265 PF10023.4 gi|385776285|ref|YP_005648853.1| - 0.26 10.3 2.0 0.28 10.2 1.4 1.1 1 0 0 1 1 1 0 Predicted aminopeptidase (DUF2265) Prominin PF05478.6 gi|385776285|ref|YP_005648853.1| - 0.27 8.7 4.1 0.69 7.3 2.7 1.5 1 1 0 1 1 1 0 Prominin RGS PF00615.14 gi|385776285|ref|YP_005648853.1| - 0.31 11.1 2.5 0.65 10.1 1.7 1.6 1 1 0 1 1 1 0 Regulator of G protein signaling domain DUF445 PF04286.7 gi|385776285|ref|YP_005648853.1| - 0.32 10.4 5.2 0.37 10.2 3.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Spore_III_AB PF09548.5 gi|385776285|ref|YP_005648853.1| - 0.38 10.4 4.2 0.53 10.0 2.9 1.3 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) Peptidase_U57 PF05582.7 gi|385776285|ref|YP_005648853.1| - 0.39 9.6 4.3 0.43 9.4 3.0 1.1 1 0 0 1 1 1 0 YabG peptidase U57 Ribosomal_L29 PF00831.18 gi|385776285|ref|YP_005648853.1| - 0.39 10.4 15.9 0.16 11.7 0.6 3.3 2 1 1 3 3 3 0 Ribosomal L29 protein DUF885 PF05960.6 gi|385776285|ref|YP_005648853.1| - 0.44 9.6 2.9 0.49 9.4 2.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) PNPase PF03726.9 gi|385776285|ref|YP_005648853.1| - 0.44 10.8 8.5 0.11 12.8 3.4 1.7 2 0 0 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain P4Ha_N PF08336.6 gi|385776285|ref|YP_005648853.1| - 0.59 9.9 6.2 0.43 10.3 2.6 1.8 1 1 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region ATP-synt_B PF00430.13 gi|385776285|ref|YP_005648853.1| - 0.59 9.9 10.9 0.2 11.4 5.2 1.8 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF3829 PF12889.2 gi|385776285|ref|YP_005648853.1| - 0.63 9.1 9.0 1.5 7.9 6.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) HBS1_N PF08938.5 gi|385776285|ref|YP_005648853.1| - 0.67 10.1 4.3 1 9.5 2.5 1.7 1 1 1 2 2 2 0 HBS1 N-terminus CorA PF01544.13 gi|385776285|ref|YP_005648853.1| - 0.82 8.6 8.4 1 8.3 5.8 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein AbiH PF14253.1 gi|385776285|ref|YP_005648853.1| - 0.84 9.1 6.7 1 8.9 4.6 1.0 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH MADF_DNA_bdg PF10545.4 gi|385776285|ref|YP_005648853.1| - 0.98 9.6 3.7 3.9 7.7 2.6 2.0 1 1 0 1 1 1 0 Alcohol dehydrogenase transcription factor Myb/SANT-like M11L PF11099.3 gi|385776285|ref|YP_005648853.1| - 1 9.0 5.3 0.52 10.0 1.3 1.8 1 1 1 2 2 2 0 Apoptosis regulator M11L like DUF3818 PF12825.2 gi|385776285|ref|YP_005648853.1| - 1.4 7.5 6.4 1.1 7.8 3.5 1.5 1 1 1 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) Methyltransf_14 PF08484.6 gi|385776285|ref|YP_005648853.1| - 2.1 7.8 5.2 1 8.8 1.6 1.8 2 0 0 2 2 2 0 C-methyltransferase C-terminal domain Mitofilin PF09731.4 gi|385776285|ref|YP_005648853.1| - 2.7 6.5 12.9 3.2 6.2 8.9 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein PhoU PF01895.14 gi|385776285|ref|YP_005648853.1| - 2.8 8.4 13.3 3 8.3 3.8 2.1 1 1 1 2 2 2 0 PhoU domain CarD_CdnL_TRCF PF02559.11 gi|385776285|ref|YP_005648853.1| - 3 7.9 5.4 8.8 6.4 3.7 1.7 1 1 1 2 2 2 0 CarD-like/TRCF domain Spore_GerAC PF05504.6 gi|385776285|ref|YP_005648853.1| - 3.1 7.5 10.2 0.95 9.2 2.3 2.3 1 1 1 2 2 2 0 Spore germination B3/ GerAC like, C-terminal Ribosomal_L6e PF01159.14 gi|385776285|ref|YP_005648853.1| - 3.2 8.0 6.4 2.5 8.3 3.4 1.5 1 1 1 2 2 2 0 Ribosomal protein L6e HK97-gp10_like PF04883.7 gi|385776285|ref|YP_005648853.1| - 4.7 8.2 6.0 8.3 7.4 0.4 2.7 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component Synaptobrevin PF00957.16 gi|385776285|ref|YP_005648853.1| - 5.2 6.7 5.8 3.8 7.1 0.5 2.5 1 1 2 3 3 3 0 Synaptobrevin HSCB_C PF07743.8 gi|385776285|ref|YP_005648853.1| - 8.6 6.9 10.8 5.2 7.6 0.8 2.6 1 1 3 4 4 4 0 HSCB C-terminal oligomerisation domain GCD14 PF08704.5 gi|385776286|ref|YP_005648854.1| - 4.1e-32 111.6 0.0 5.8e-32 111.1 0.0 1.0 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|385776286|ref|YP_005648854.1| - 1e-10 41.4 0.0 1.3e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385776286|ref|YP_005648854.1| - 3.4e-08 34.0 0.0 6.5e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|385776286|ref|YP_005648854.1| - 6.7e-08 31.8 0.2 1.5e-07 30.6 0.0 1.6 2 0 0 2 2 2 1 O-methyltransferase MTS PF05175.9 gi|385776286|ref|YP_005648854.1| - 9.4e-07 28.3 0.0 1.3e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|385776286|ref|YP_005648854.1| - 9.5e-07 28.5 0.0 1.4e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|385776286|ref|YP_005648854.1| - 4.4e-06 26.7 0.0 7e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385776286|ref|YP_005648854.1| - 1.4e-05 24.3 0.3 2.6e-05 23.5 0.2 1.5 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|385776286|ref|YP_005648854.1| - 0.00015 21.4 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|385776286|ref|YP_005648854.1| - 0.0002 21.0 0.0 0.00033 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|385776286|ref|YP_005648854.1| - 0.0011 18.4 0.1 0.0022 17.4 0.0 1.5 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|385776286|ref|YP_005648854.1| - 0.004 16.7 0.0 0.0075 15.8 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.1 gi|385776286|ref|YP_005648854.1| - 0.0058 17.4 0.0 0.014 16.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|385776286|ref|YP_005648854.1| - 0.015 14.3 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|385776286|ref|YP_005648854.1| - 0.035 13.2 0.0 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|385776286|ref|YP_005648854.1| - 0.12 12.6 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|385776286|ref|YP_005648854.1| - 0.15 10.9 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) RHH_2 PF03693.9 gi|385776287|ref|YP_005648855.1| - 7e-08 32.5 0.0 7.5e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) RHH_1 PF01402.16 gi|385776287|ref|YP_005648855.1| - 3.6e-07 29.8 0.0 4.2e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family TrmB PF01978.14 gi|385776288|ref|YP_005648856.1| - 1.1e-21 76.3 0.3 2.7e-21 75.0 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|385776288|ref|YP_005648856.1| - 0.0007 19.6 0.1 0.0015 18.5 0.0 1.6 2 0 0 2 2 2 1 Penicillinase repressor HTH_9 PF08221.6 gi|385776288|ref|YP_005648856.1| - 0.0015 18.3 0.0 0.0042 16.9 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.1 gi|385776288|ref|YP_005648856.1| - 0.0019 17.5 0.0 0.0048 16.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|385776288|ref|YP_005648856.1| - 0.011 15.3 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4065 PF13274.1 gi|385776288|ref|YP_005648856.1| - 0.096 13.3 0.1 0.22 12.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) DUF2250 PF10007.4 gi|385776288|ref|YP_005648856.1| - 0.12 12.3 0.1 0.44 10.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|385776288|ref|YP_005648856.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FeoC PF09012.5 gi|385776288|ref|YP_005648856.1| - 0.16 11.7 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR_2 PF12802.2 gi|385776288|ref|YP_005648856.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.5 1 1 0 1 1 1 0 MarR family Ribosomal_S25 PF03297.10 gi|385776289|ref|YP_005648857.1| - 1.6e-11 44.1 8.6 1.8e-11 43.9 6.0 1.0 1 0 0 1 1 1 1 S25 ribosomal protein HTH_24 PF13412.1 gi|385776289|ref|YP_005648857.1| - 5.2e-06 25.7 1.7 5.5e-06 25.6 0.3 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|385776289|ref|YP_005648857.1| - 0.00021 21.0 0.3 0.25 11.1 0.1 2.2 1 1 1 2 2 2 2 Crp-like helix-turn-helix domain TFIIF_alpha PF05793.7 gi|385776289|ref|YP_005648857.1| - 0.0027 16.1 3.4 0.0027 16.1 2.4 1.1 1 0 0 1 1 1 1 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) TFIIE_alpha PF02002.12 gi|385776289|ref|YP_005648857.1| - 0.0044 16.4 0.6 0.0044 16.4 0.4 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit MarR PF01047.17 gi|385776289|ref|YP_005648857.1| - 0.0078 15.9 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|385776289|ref|YP_005648857.1| - 0.0092 16.0 0.9 0.058 13.5 0.2 2.0 1 1 1 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|385776289|ref|YP_005648857.1| - 0.011 15.3 1.8 0.011 15.3 0.5 1.6 2 0 0 2 2 2 0 HTH domain TrmB PF01978.14 gi|385776289|ref|YP_005648857.1| - 0.033 13.8 1.2 0.059 13.0 0.5 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Galactosyl_T PF01762.16 gi|385776289|ref|YP_005648857.1| - 0.073 12.6 0.1 0.09 12.3 0.1 1.1 1 0 0 1 1 1 0 Galactosyltransferase EAP30 PF04157.11 gi|385776289|ref|YP_005648857.1| - 0.075 12.1 0.1 0.075 12.1 0.1 1.8 1 1 1 2 2 2 0 EAP30/Vps36 family RepL PF05732.6 gi|385776289|ref|YP_005648857.1| - 0.14 11.3 0.1 0.14 11.3 0.1 1.8 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) IF-2B PF01008.12 gi|385776289|ref|YP_005648857.1| - 0.16 10.8 2.0 0.18 10.7 1.4 1.0 1 0 0 1 1 1 0 Initiation factor 2 subunit family tRNA-Thr_ED PF08915.6 gi|385776289|ref|YP_005648857.1| - 0.33 10.9 2.2 0.86 9.5 1.5 1.8 1 1 0 1 1 1 0 Archaea-specific editing domain of threonyl-tRNA synthetase CN_hydrolase PF00795.17 gi|385776290|ref|YP_005648858.1| - 9.6e-14 51.1 0.0 1.6e-13 50.4 0.0 1.4 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Dmrt1 PF12374.3 gi|385776290|ref|YP_005648858.1| - 0.013 15.7 0.1 0.024 14.9 0.0 1.3 1 0 0 1 1 1 0 Double-sex mab3 related transcription factor 1 Pox_A32 PF04665.7 gi|385776290|ref|YP_005648858.1| - 0.11 11.7 0.1 4.7 6.4 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein TMP-TENI PF02581.12 gi|385776290|ref|YP_005648858.1| - 0.12 11.4 0.1 0.34 10.0 0.1 1.7 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI Topoisom_bac PF01131.15 gi|385776291|ref|YP_005648859.1| - 8e-87 291.6 6.7 1.4e-86 290.9 4.6 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|385776291|ref|YP_005648859.1| - 5.7e-24 83.9 0.0 5.7e-24 83.9 0.0 3.0 4 0 0 4 4 4 1 Toprim domain DEAD PF00270.24 gi|385776291|ref|YP_005648859.1| - 9.5e-15 54.4 0.3 9.7e-14 51.2 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|385776291|ref|YP_005648859.1| - 0.0002 21.2 0.2 0.0002 21.2 0.2 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385776291|ref|YP_005648859.1| - 0.0054 16.5 0.0 7.6 6.4 0.0 3.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain zf-C4_Topoisom PF01396.14 gi|385776291|ref|YP_005648859.1| - 0.0073 15.7 1.1 1.9 8.0 0.1 2.7 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger AAA_25 PF13481.1 gi|385776291|ref|YP_005648859.1| - 0.018 14.4 0.0 0.048 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain zf-ribbon_3 PF13248.1 gi|385776291|ref|YP_005648859.1| - 0.074 12.2 6.7 2.8 7.2 1.5 2.5 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385776291|ref|YP_005648859.1| - 0.15 11.7 1.6 13 5.5 0.2 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|385776291|ref|YP_005648859.1| - 0.94 9.2 4.5 0.38 10.4 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|385776291|ref|YP_005648859.1| - 3.6 7.2 5.5 23 4.6 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385776291|ref|YP_005648859.1| - 3.8 6.9 6.2 6.6 6.1 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding AAA PF00004.24 gi|385776292|ref|YP_005648860.1| - 4.7e-101 334.2 0.0 4e-49 166.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|385776292|ref|YP_005648860.1| - 1.5e-22 79.3 0.3 6.9e-22 77.2 0.4 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|385776292|ref|YP_005648860.1| - 1e-16 60.7 0.1 4.5e-09 35.6 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|385776292|ref|YP_005648860.1| - 1.1e-15 57.9 0.0 1e-07 32.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|385776292|ref|YP_005648860.1| - 2.1e-15 56.1 0.1 1.4e-12 47.0 0.1 2.8 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|385776292|ref|YP_005648860.1| - 3.2e-14 53.1 0.3 4.6e-05 23.5 0.0 4.7 2 2 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|385776292|ref|YP_005648860.1| - 3.5e-14 53.2 0.2 3.3e-07 30.4 0.0 3.7 3 1 1 4 4 4 2 AAA ATPase domain AAA_17 PF13207.1 gi|385776292|ref|YP_005648860.1| - 2e-12 47.9 0.2 4.5e-06 27.4 0.0 3.3 3 1 0 3 3 2 2 AAA domain AAA_5 PF07728.9 gi|385776292|ref|YP_005648860.1| - 3.6e-12 46.1 1.9 0.00011 21.9 0.0 4.3 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|385776292|ref|YP_005648860.1| - 1.5e-11 43.6 0.1 0.00012 20.8 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|385776292|ref|YP_005648860.1| - 2.8e-11 43.4 0.0 0.00028 20.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|385776292|ref|YP_005648860.1| - 4.5e-11 42.7 0.0 2.5e-05 24.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|385776292|ref|YP_005648860.1| - 2.9e-09 36.6 0.8 0.0025 17.2 0.1 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|385776292|ref|YP_005648860.1| - 3.9e-09 35.8 0.0 0.0015 17.7 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|385776292|ref|YP_005648860.1| - 1.1e-08 35.4 0.1 0.0014 18.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|385776292|ref|YP_005648860.1| - 2.9e-08 33.6 0.1 0.0027 17.4 0.0 4.1 3 1 1 4 4 3 1 Archaeal ATPase AAA_28 PF13521.1 gi|385776292|ref|YP_005648860.1| - 3.4e-08 33.6 0.0 0.0096 15.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|385776292|ref|YP_005648860.1| - 8.5e-08 31.8 4.2 0.025 13.9 0.1 4.0 2 2 1 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|385776292|ref|YP_005648860.1| - 1.2e-07 31.1 0.6 0.0067 15.6 0.1 2.8 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|385776292|ref|YP_005648860.1| - 1.6e-07 31.4 0.0 0.0046 17.1 0.0 2.8 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|385776292|ref|YP_005648860.1| - 2.3e-07 30.6 0.7 0.14 11.7 0.0 4.2 4 0 0 4 4 4 2 NACHT domain AAA_19 PF13245.1 gi|385776292|ref|YP_005648860.1| - 1.1e-06 28.2 0.3 0.032 13.9 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain Vps4_C PF09336.5 gi|385776292|ref|YP_005648860.1| - 4.3e-06 26.5 1.5 0.023 14.6 0.1 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_3 PF07726.6 gi|385776292|ref|YP_005648860.1| - 5.2e-06 26.0 0.0 0.03 13.9 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|385776292|ref|YP_005648860.1| - 5.9e-06 26.6 0.0 0.84 9.9 0.0 3.7 3 0 0 3 3 3 2 ABC transporter AAA_24 PF13479.1 gi|385776292|ref|YP_005648860.1| - 7.9e-06 25.5 1.2 0.055 13.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|385776292|ref|YP_005648860.1| - 8.2e-06 25.9 0.0 0.23 11.4 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain Molydop_binding PF01568.16 gi|385776292|ref|YP_005648860.1| - 1.1e-05 25.2 0.1 6.6e-05 22.6 0.0 2.4 2 0 0 2 2 1 1 Molydopterin dinucleotide binding domain Sigma54_activat PF00158.21 gi|385776292|ref|YP_005648860.1| - 1.1e-05 24.9 0.9 0.69 9.3 0.0 4.5 4 1 0 4 4 4 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|385776292|ref|YP_005648860.1| - 1.2e-05 24.3 0.0 0.049 12.5 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|385776292|ref|YP_005648860.1| - 1.5e-05 24.8 0.0 0.0076 15.9 0.0 3.4 2 2 1 3 3 2 1 Bacterial dnaA protein AAA_11 PF13086.1 gi|385776292|ref|YP_005648860.1| - 5.9e-05 22.7 0.1 0.046 13.2 0.1 2.9 2 1 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|385776292|ref|YP_005648860.1| - 0.00018 21.1 0.0 0.43 10.2 0.0 2.6 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|385776292|ref|YP_005648860.1| - 0.0003 19.7 0.1 0.66 8.7 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|385776292|ref|YP_005648860.1| - 0.00033 19.9 0.4 0.26 10.5 0.1 2.9 2 0 0 2 2 2 1 PhoH-like protein SKI PF01202.17 gi|385776292|ref|YP_005648860.1| - 0.00061 19.6 0.4 0.69 9.7 0.0 3.0 3 0 0 3 3 2 1 Shikimate kinase ATP-synt_ab PF00006.20 gi|385776292|ref|YP_005648860.1| - 0.00063 19.3 0.0 0.2 11.1 0.0 2.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|385776292|ref|YP_005648860.1| - 0.0014 17.5 0.0 0.64 8.8 0.0 2.6 2 0 0 2 2 2 1 NB-ARC domain AFG1_ATPase PF03969.11 gi|385776292|ref|YP_005648860.1| - 0.0031 16.3 0.1 1.8 7.2 0.0 2.7 2 1 0 2 2 2 1 AFG1-like ATPase KaiC PF06745.8 gi|385776292|ref|YP_005648860.1| - 0.0046 16.1 8.9 0.37 9.8 0.0 4.9 6 0 0 6 6 5 1 KaiC AAA_29 PF13555.1 gi|385776292|ref|YP_005648860.1| - 0.006 16.0 0.1 11 5.6 0.0 3.8 4 0 0 4 4 4 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|385776292|ref|YP_005648860.1| - 0.007 16.0 4.7 8.2 6.1 0.0 4.5 3 2 1 5 5 3 0 NTPase DUF2075 PF09848.4 gi|385776292|ref|YP_005648860.1| - 0.0081 15.1 0.0 1.7 7.5 0.0 2.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|385776292|ref|YP_005648860.1| - 0.015 15.1 0.0 1.5 8.6 0.0 2.9 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|385776292|ref|YP_005648860.1| - 0.018 13.9 0.0 2.9 6.7 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein IPT PF01745.11 gi|385776292|ref|YP_005648860.1| - 0.022 13.9 0.2 1.2 8.2 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Guanylate_kin PF00625.16 gi|385776292|ref|YP_005648860.1| - 0.024 14.0 0.1 12 5.3 0.0 3.6 3 1 1 4 4 3 0 Guanylate kinase KTI12 PF08433.5 gi|385776292|ref|YP_005648860.1| - 0.028 13.6 0.4 6.8 5.7 0.0 2.9 3 0 0 3 3 2 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|385776292|ref|YP_005648860.1| - 0.035 14.0 0.0 2.5 8.0 0.0 3.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|385776292|ref|YP_005648860.1| - 0.036 13.4 4.8 2.4 7.4 0.1 3.6 2 2 0 2 2 2 0 AAA-like domain Viral_helicase1 PF01443.13 gi|385776292|ref|YP_005648860.1| - 0.037 13.5 0.0 2.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|385776292|ref|YP_005648860.1| - 0.073 12.6 0.0 6 6.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|385776292|ref|YP_005648860.1| - 0.19 12.0 2.3 14 5.9 0.0 3.4 3 1 0 3 3 3 0 AAA domain PhosphMutase PF10143.4 gi|385776293|ref|YP_005648861.1| - 2.5e-61 206.2 0.0 4e-61 205.6 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|385776293|ref|YP_005648861.1| - 1.7e-49 168.4 0.1 2e-49 168.2 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|385776293|ref|YP_005648861.1| - 0.00063 19.1 0.0 0.00096 18.5 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|385776293|ref|YP_005648861.1| - 0.0013 17.9 0.0 0.0018 17.5 0.0 1.3 1 0 0 1 1 1 1 Sulfatase HEPPP_synt_1 PF07307.6 gi|385776293|ref|YP_005648861.1| - 0.11 11.9 0.1 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 DUF359 PF04019.7 gi|385776294|ref|YP_005648862.1| - 2.1e-38 130.4 1.1 2.7e-38 130.0 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|385776295|ref|YP_005648863.1| - 2.6e-15 56.0 0.6 3e-15 55.8 0.4 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|385776295|ref|YP_005648863.1| - 0.00059 19.6 1.3 0.00077 19.2 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|385776295|ref|YP_005648863.1| - 0.0015 17.6 2.7 0.0021 17.1 1.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385776295|ref|YP_005648863.1| - 0.0048 16.3 2.6 0.0075 15.7 1.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain NRDD PF13597.1 gi|385776295|ref|YP_005648863.1| - 0.011 13.8 0.7 0.012 13.7 0.5 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-C3HC4_3 PF13920.1 gi|385776295|ref|YP_005648863.1| - 0.021 14.5 1.6 0.03 13.9 1.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RecR PF02132.10 gi|385776295|ref|YP_005648863.1| - 0.025 14.0 0.8 0.034 13.5 0.6 1.3 1 0 0 1 1 1 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|385776295|ref|YP_005648863.1| - 0.027 13.7 4.0 0.1 11.9 0.3 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|385776295|ref|YP_005648863.1| - 0.032 13.9 0.5 0.033 13.8 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Rad50_zn_hook PF04423.9 gi|385776295|ref|YP_005648863.1| - 0.036 13.5 1.4 0.057 12.8 1.0 1.5 1 1 0 1 1 1 0 Rad50 zinc hook motif UPF0547 PF10571.4 gi|385776295|ref|YP_005648863.1| - 0.037 13.7 3.5 0.059 13.0 2.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|385776295|ref|YP_005648863.1| - 0.052 13.3 0.1 0.052 13.3 0.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-P11 PF03854.9 gi|385776295|ref|YP_005648863.1| - 0.07 12.6 0.2 0.27 10.7 0.2 1.7 2 0 0 2 2 2 0 P-11 zinc finger zf-RING_4 PF14570.1 gi|385776295|ref|YP_005648863.1| - 0.11 12.0 0.8 0.17 11.5 0.6 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain DUF2072 PF09845.4 gi|385776295|ref|YP_005648863.1| - 0.12 12.2 0.2 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Nop10p PF04135.7 gi|385776295|ref|YP_005648863.1| - 0.13 11.9 0.5 0.27 10.9 0.2 1.6 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-C4H2 PF10146.4 gi|385776295|ref|YP_005648863.1| - 0.15 12.0 0.4 0.19 11.7 0.3 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein Lar_restr_allev PF14354.1 gi|385776295|ref|YP_005648863.1| - 0.16 12.3 3.5 0.23 11.7 0.2 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|385776295|ref|YP_005648863.1| - 0.18 11.5 0.7 0.18 11.5 0.5 1.6 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_2 PF13923.1 gi|385776295|ref|YP_005648863.1| - 0.26 11.3 2.3 0.39 10.7 1.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RRN7 PF11781.3 gi|385776295|ref|YP_005648863.1| - 0.29 10.6 3.0 0.63 9.5 0.1 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-RING_3 PF14369.1 gi|385776295|ref|YP_005648863.1| - 0.54 10.3 2.9 1.3 9.0 2.1 1.6 1 1 1 2 2 2 0 zinc-finger RNA_POL_M_15KD PF02150.11 gi|385776295|ref|YP_005648863.1| - 0.56 9.9 3.5 1.5 8.5 0.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Auto_anti-p27 PF06677.7 gi|385776295|ref|YP_005648863.1| - 0.61 9.8 3.3 1.2 9.0 2.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.5 gi|385776295|ref|YP_005648863.1| - 0.99 9.4 5.2 21 5.1 3.9 2.2 1 1 1 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|385776295|ref|YP_005648863.1| - 1.1 8.7 3.7 4.6 6.8 2.6 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain SHS2_Rpb7-N PF03876.12 gi|385776296|ref|YP_005648864.1| - 2.2e-17 62.9 0.0 4.6e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|385776296|ref|YP_005648864.1| - 2.7e-16 59.4 3.0 4.4e-16 58.7 2.1 1.3 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|385776296|ref|YP_005648864.1| - 0.0061 16.7 0.0 0.0097 16.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 PIN PF01850.16 gi|385776297|ref|YP_005648865.1| - 1e-07 32.3 1.1 1.3e-07 32.0 0.7 1.1 1 0 0 1 1 1 1 PIN domain Fcf1 PF04900.7 gi|385776297|ref|YP_005648865.1| - 0.0001 22.2 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|385776297|ref|YP_005648865.1| - 0.00065 19.8 1.1 0.011 15.8 0.8 2.0 1 1 0 1 1 1 1 PIN domain GTP_EFTU PF00009.22 gi|385776298|ref|YP_005648866.1| - 3e-42 144.2 0.0 4.8e-42 143.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|385776298|ref|YP_005648866.1| - 6.6e-32 109.4 1.8 1.6e-31 108.2 1.2 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|385776298|ref|YP_005648866.1| - 1.8e-07 31.1 0.7 2e-06 27.8 0.1 2.6 2 1 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|385776298|ref|YP_005648866.1| - 0.00049 20.0 0.0 0.00092 19.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|385776298|ref|YP_005648866.1| - 0.0011 18.5 1.8 0.58 9.6 0.0 2.7 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|385776298|ref|YP_005648866.1| - 0.028 13.2 0.3 0.23 10.2 0.0 2.0 2 0 0 2 2 2 0 ArgK protein FeoB_N PF02421.13 gi|385776298|ref|YP_005648866.1| - 0.086 12.1 0.3 5.3 6.3 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S6e PF01092.14 gi|385776299|ref|YP_005648867.1| - 3.4e-26 91.3 1.6 1.5e-24 86.0 0.0 2.9 2 1 1 3 3 3 2 Ribosomal protein S6e CbiX PF01903.12 gi|385776300|ref|YP_005648868.1| - 4.8e-27 94.1 0.0 5.4e-27 93.9 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|385776300|ref|YP_005648868.1| - 1.1e-05 24.7 0.0 1.2e-05 24.5 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ribosomal_S13_N PF08069.7 gi|385776301|ref|YP_005648869.1| - 2.1e-24 85.1 0.7 1.2e-23 82.7 0.2 2.1 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|385776301|ref|YP_005648869.1| - 3.9e-18 64.9 0.0 5.2e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF2408 PF10303.4 gi|385776301|ref|YP_005648869.1| - 0.028 14.5 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) RecX PF02631.11 gi|385776301|ref|YP_005648869.1| - 0.1 12.7 0.4 8.6 6.5 0.0 2.1 2 0 0 2 2 2 0 RecX family YozD PF14162.1 gi|385776301|ref|YP_005648869.1| - 0.11 12.6 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 YozD-like protein Meth_synt_2 PF01717.13 gi|385776302|ref|YP_005648870.1| - 7.2e-91 304.5 0.0 8.3e-91 304.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|385776302|ref|YP_005648870.1| - 8.3e-29 100.8 1.2 1.9e-23 83.2 1.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|385776302|ref|YP_005648870.1| - 0.00066 18.6 0.0 0.0011 17.9 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.7 gi|385776303|ref|YP_005648871.1| - 5.9e-57 193.2 2.6 1.6e-55 188.5 1.8 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|385776303|ref|YP_005648871.1| - 1.8e-09 37.0 0.0 2.7e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain PCNA_N PF00705.13 gi|385776304|ref|YP_005648872.1| - 8.6e-16 57.6 1.6 1.9e-15 56.5 0.3 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|385776304|ref|YP_005648872.1| - 7.9e-10 38.7 0.5 2e-07 30.9 0.0 2.5 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|385776304|ref|YP_005648872.1| - 1.3e-06 27.7 0.6 4.6e-06 25.9 0.4 1.8 1 1 0 1 1 1 1 Rad9 Rad1 PF02144.11 gi|385776304|ref|YP_005648872.1| - 4.1e-06 25.7 2.1 0.0011 17.7 0.1 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta_3 PF02768.10 gi|385776304|ref|YP_005648872.1| - 0.00055 19.4 5.0 0.17 11.4 0.8 2.6 2 1 0 2 2 2 2 DNA polymerase III beta subunit, C-terminal domain Hus1 PF04005.7 gi|385776304|ref|YP_005648872.1| - 0.007 15.3 0.2 0.017 14.0 0.1 1.6 1 0 0 1 1 1 1 Hus1-like protein ocr PF08684.5 gi|385776304|ref|YP_005648872.1| - 0.008 16.1 0.8 0.024 14.6 0.1 2.1 2 0 0 2 2 2 1 DNA mimic ocr RNA_pol_A_bac PF01000.21 gi|385776304|ref|YP_005648872.1| - 0.057 13.5 0.2 0.21 11.7 0.2 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb3/RpoA insert domain GATase_3 PF07685.9 gi|385776305|ref|YP_005648873.1| - 4.1e-33 114.2 0.1 7e-33 113.4 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|385776305|ref|YP_005648873.1| - 3.2e-17 62.6 0.0 6.5e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|385776305|ref|YP_005648873.1| - 1.1e-12 47.9 0.1 2e-08 34.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF2208 PF09973.4 gi|385776306|ref|YP_005648874.1| - 8.5e-83 277.1 18.6 9.8e-83 276.9 12.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF106 PF01956.11 gi|385776306|ref|YP_005648874.1| - 0.00074 19.0 10.6 0.0023 17.5 6.0 2.2 1 1 1 2 2 2 1 Integral membrane protein DUF106 YniB PF14002.1 gi|385776306|ref|YP_005648874.1| - 0.01 15.3 1.6 0.01 15.3 1.1 2.1 1 1 1 2 2 2 0 YniB-like protein ApoC-I PF04691.7 gi|385776306|ref|YP_005648874.1| - 0.11 12.1 1.4 0.43 10.2 0.2 2.1 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) SdpI PF13630.1 gi|385776306|ref|YP_005648874.1| - 7.4 6.3 10.4 13 5.5 0.2 2.3 2 0 0 2 2 2 0 SdpI/YhfL protein family DHBP_synthase PF00926.14 gi|385776307|ref|YP_005648875.1| - 5.9e-56 188.7 0.0 7.4e-56 188.4 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.14 gi|385776308|ref|YP_005648876.1| - 3.7e-18 65.5 0.1 4.3e-18 65.3 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF1310 PF07006.6 gi|385776308|ref|YP_005648876.1| - 0.038 13.5 0.8 6.1 6.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1310) DMRL_synthase PF00885.14 gi|385776309|ref|YP_005648877.1| - 5.3e-41 139.6 1.6 6e-41 139.4 1.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Transaldolase PF00923.14 gi|385776309|ref|YP_005648877.1| - 0.021 13.9 0.1 0.055 12.5 0.0 1.6 1 1 0 1 1 1 0 Transaldolase GcpE PF04551.9 gi|385776309|ref|YP_005648877.1| - 0.066 12.0 0.1 0.078 11.7 0.1 1.2 1 0 0 1 1 1 0 GcpE protein ADSL_C PF10397.4 gi|385776309|ref|YP_005648877.1| - 0.1 12.6 0.1 0.25 11.3 0.1 1.7 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus RII_binding_1 PF10522.4 gi|385776309|ref|YP_005648877.1| - 0.17 12.0 1.0 4.1 7.9 0.2 2.9 2 0 0 2 2 2 0 RII binding domain GGDN PF05165.7 gi|385776310|ref|YP_005648878.1| - 4.5e-37 127.4 0.0 6.6e-37 126.8 0.0 1.3 1 1 0 1 1 1 1 GGDN family Amidohydro_1 PF01979.15 gi|385776311|ref|YP_005648879.1| - 5.1e-12 46.1 0.3 1.1e-08 35.1 0.0 2.8 2 1 1 3 3 3 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385776311|ref|YP_005648879.1| - 3.2e-11 43.7 0.0 2.9e-10 40.6 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|385776311|ref|YP_005648879.1| - 1.5e-05 24.6 0.0 3.3e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase MGDG_synth PF06925.6 gi|385776311|ref|YP_005648879.1| - 0.04 13.8 0.1 0.077 12.8 0.1 1.5 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase DUF2283 PF10049.4 gi|385776311|ref|YP_005648879.1| - 0.08 12.8 0.2 8.8 6.2 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) PCNA_N PF00705.13 gi|385776312|ref|YP_005648880.1| - 2.3e-06 27.1 1.7 1.4e-05 24.5 0.2 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|385776312|ref|YP_005648880.1| - 0.00017 20.8 0.8 0.00019 20.6 0.5 1.0 1 0 0 1 1 1 1 Rad9 Hus1 PF04005.7 gi|385776312|ref|YP_005648880.1| - 0.018 13.9 0.4 0.03 13.2 0.2 1.4 1 1 0 1 1 1 0 Hus1-like protein RNA_pol_Rpo13 PF12136.3 gi|385776313|ref|YP_005648881.1| - 4.3e-19 67.9 4.3 4.3e-19 67.9 3.0 2.3 2 0 0 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain AAA_10 PF12846.2 gi|385776314|ref|YP_005648882.1| - 2.5e-28 99.3 0.6 3.6e-28 98.8 0.4 1.2 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|385776314|ref|YP_005648882.1| - 1.4e-10 41.3 0.7 2.7e-10 40.4 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|385776314|ref|YP_005648882.1| - 6.1e-05 23.1 0.2 0.49 10.5 0.0 2.8 3 0 0 3 3 2 2 AAA domain ABC_tran PF00005.22 gi|385776314|ref|YP_005648882.1| - 0.00017 21.9 0.0 0.00035 20.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TrwB_AAD_bind PF10412.4 gi|385776314|ref|YP_005648882.1| - 0.00017 20.3 0.0 0.46 9.0 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Pox_A32 PF04665.7 gi|385776314|ref|YP_005648882.1| - 0.001 18.3 0.1 0.16 11.2 0.1 2.3 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_18 PF13238.1 gi|385776314|ref|YP_005648882.1| - 0.0023 18.2 0.1 0.0074 16.5 0.0 2.0 2 0 0 2 2 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|385776314|ref|YP_005648882.1| - 0.0033 16.9 0.0 0.006 16.0 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|385776314|ref|YP_005648882.1| - 0.0041 16.6 0.2 0.013 15.0 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain TraG-D_C PF12696.2 gi|385776314|ref|YP_005648882.1| - 0.0041 16.9 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG AAA_24 PF13479.1 gi|385776314|ref|YP_005648882.1| - 0.0093 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385776314|ref|YP_005648882.1| - 0.01 16.6 0.4 0.023 15.5 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|385776314|ref|YP_005648882.1| - 0.011 15.7 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|385776314|ref|YP_005648882.1| - 0.014 15.0 0.2 0.048 13.3 0.0 1.9 2 0 0 2 2 2 0 Archaeal ATPase T2SE PF00437.15 gi|385776314|ref|YP_005648882.1| - 0.022 13.6 0.0 0.046 12.6 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AIG1 PF04548.11 gi|385776314|ref|YP_005648882.1| - 0.026 13.6 0.3 0.082 11.9 0.1 1.8 2 0 0 2 2 2 0 AIG1 family MMR_HSR1 PF01926.18 gi|385776314|ref|YP_005648882.1| - 0.029 14.3 0.1 0.48 10.3 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|385776314|ref|YP_005648882.1| - 0.047 13.0 0.0 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_32 PF13654.1 gi|385776314|ref|YP_005648882.1| - 0.051 12.2 0.0 0.081 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|385776314|ref|YP_005648882.1| - 0.061 12.2 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF258 PF03193.11 gi|385776314|ref|YP_005648882.1| - 0.079 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|385776314|ref|YP_005648882.1| - 0.091 13.2 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein Zot PF05707.7 gi|385776314|ref|YP_005648882.1| - 0.12 11.8 0.6 0.77 9.1 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Zeta_toxin PF06414.7 gi|385776314|ref|YP_005648882.1| - 0.19 10.8 0.0 0.33 10.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|385776314|ref|YP_005648882.1| - 0.22 10.7 0.7 0.39 9.9 0.5 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385776314|ref|YP_005648882.1| - 0.24 11.6 6.8 0.64 10.3 4.7 1.8 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|385776315|ref|YP_005648883.1| - 1.2e-35 122.4 0.3 9.5e-35 119.5 0.0 2.5 3 1 1 4 4 4 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|385776315|ref|YP_005648883.1| - 1.1e-22 80.6 0.0 3.8e-22 78.9 0.0 1.9 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.26 gi|385776315|ref|YP_005648883.1| - 1.5e-18 66.3 1.3 7.2e-16 57.8 0.2 2.9 3 0 0 3 3 3 2 Helicase conserved C-terminal domain SecA_DEAD PF07517.9 gi|385776315|ref|YP_005648883.1| - 0.006 15.9 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain ResIII PF04851.10 gi|385776315|ref|YP_005648883.1| - 0.02 14.7 0.0 0.12 12.1 0.0 2.3 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Ribosomal_L14e PF01929.12 gi|385776316|ref|YP_005648884.1| - 4.4e-05 23.7 0.2 6.5e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.24 gi|385776316|ref|YP_005648884.1| - 0.0027 17.3 2.5 0.0053 16.4 1.7 1.5 1 0 0 1 1 1 1 KOW motif XisI PF08869.6 gi|385776316|ref|YP_005648884.1| - 0.019 15.1 0.1 0.022 14.8 0.0 1.1 1 0 0 1 1 1 0 XisI protein DKCLD PF08068.7 gi|385776317|ref|YP_005648885.1| - 2.5e-18 65.7 0.3 3.6e-18 65.2 0.2 1.2 1 0 0 1 1 1 1 DKCLD (NUC011) domain TruB_N PF01509.13 gi|385776317|ref|YP_005648885.1| - 0.0046 17.1 0.2 0.013 15.7 0.0 1.7 2 0 0 2 2 2 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|385776318|ref|YP_005648886.1| - 2e-19 69.0 0.4 1.4e-18 66.4 0.1 2.0 2 0 0 2 2 2 1 PUA domain TruB_N PF01509.13 gi|385776318|ref|YP_005648886.1| - 4.4e-10 39.9 0.1 4.2e-08 33.4 0.1 2.9 1 1 1 2 2 2 1 TruB family pseudouridylate synthase (N terminal domain) DUF4172 PF13776.1 gi|385776318|ref|YP_005648886.1| - 0.062 13.4 0.0 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) MTS PF05175.9 gi|385776319|ref|YP_005648887.1| - 6.4e-38 129.7 0.0 7.3e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|385776319|ref|YP_005648887.1| - 2.2e-13 50.0 0.1 3.1e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385776319|ref|YP_005648887.1| - 1.1e-10 42.0 0.0 1.5e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385776319|ref|YP_005648887.1| - 5e-09 36.2 0.0 6.4e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385776319|ref|YP_005648887.1| - 5.2e-09 35.6 0.0 6.4e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|385776319|ref|YP_005648887.1| - 2.1e-07 30.7 0.8 1.4e-06 28.0 0.1 1.9 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|385776319|ref|YP_005648887.1| - 1.6e-05 25.1 0.0 2.1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385776319|ref|YP_005648887.1| - 2.8e-05 24.5 0.0 5e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|385776319|ref|YP_005648887.1| - 3.3e-05 23.5 0.1 4.4e-05 23.0 0.1 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|385776319|ref|YP_005648887.1| - 5.8e-05 22.2 0.1 0.0001 21.4 0.0 1.3 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|385776319|ref|YP_005648887.1| - 0.00014 22.2 0.0 0.00035 21.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|385776319|ref|YP_005648887.1| - 0.00017 20.8 0.2 0.0003 19.9 0.1 1.5 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_16 PF10294.4 gi|385776319|ref|YP_005648887.1| - 0.00032 20.1 0.0 0.00062 19.2 0.0 1.6 1 1 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.13 gi|385776319|ref|YP_005648887.1| - 0.00064 19.3 0.0 0.00078 19.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|385776319|ref|YP_005648887.1| - 0.0017 17.8 0.0 0.002 17.5 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|385776319|ref|YP_005648887.1| - 0.0027 17.4 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|385776319|ref|YP_005648887.1| - 0.0043 16.2 0.0 0.007 15.5 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB FmrO PF07091.6 gi|385776319|ref|YP_005648887.1| - 0.0055 15.7 0.0 0.0075 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) N6_Mtase PF02384.11 gi|385776319|ref|YP_005648887.1| - 0.0094 15.0 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase CMAS PF02353.15 gi|385776319|ref|YP_005648887.1| - 0.048 12.7 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF633 PF04816.7 gi|385776319|ref|YP_005648887.1| - 0.062 12.6 0.1 0.091 12.0 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF633) TRM PF02005.11 gi|385776319|ref|YP_005648887.1| - 0.077 11.9 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Helicase_RecD PF05127.9 gi|385776320|ref|YP_005648888.1| - 2e-50 170.8 0.0 3.7e-50 170.0 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|385776320|ref|YP_005648888.1| - 6.5e-43 146.3 0.0 6.3e-42 143.1 0.0 2.1 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|385776320|ref|YP_005648888.1| - 3.1e-18 65.2 0.0 6.5e-18 64.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.1 gi|385776320|ref|YP_005648888.1| - 7.3e-09 35.6 0.0 2.9e-08 33.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|385776320|ref|YP_005648888.1| - 9.3e-06 25.5 0.0 2.1e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family tRNA_bind_2 PF13725.1 gi|385776320|ref|YP_005648888.1| - 5.1e-05 23.3 0.1 0.00014 21.9 0.0 1.7 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_22 PF13401.1 gi|385776320|ref|YP_005648888.1| - 0.00019 21.5 0.3 0.0023 18.1 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|385776320|ref|YP_005648888.1| - 0.0056 16.2 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Acetyltransf_CG PF14542.1 gi|385776320|ref|YP_005648888.1| - 0.056 13.3 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase ADIP PF11559.3 gi|385776321|ref|YP_005648889.1| - 2.2e-09 37.4 5.1 1.1e-06 28.6 0.4 2.2 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding ATG16 PF08614.6 gi|385776321|ref|YP_005648889.1| - 5.2e-09 36.1 3.3 8.6e-09 35.4 2.3 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|385776321|ref|YP_005648889.1| - 6.4e-09 35.5 9.1 9.7e-05 22.1 0.8 2.6 1 1 1 2 2 2 2 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|385776321|ref|YP_005648889.1| - 2.2e-07 30.6 0.2 2.2e-07 30.6 0.1 2.8 2 1 1 3 3 1 1 IncA protein Reo_sigmaC PF04582.7 gi|385776321|ref|YP_005648889.1| - 8.5e-07 28.4 37.6 1.1e-05 24.8 13.2 1.8 1 1 1 2 2 2 2 Reovirus sigma C capsid protein TMF_TATA_bd PF12325.3 gi|385776321|ref|YP_005648889.1| - 1.3e-06 28.1 2.2 0.00022 20.9 0.6 2.6 1 1 0 2 2 2 1 TATA element modulatory factor 1 TATA binding Baculo_PEP_C PF04513.7 gi|385776321|ref|YP_005648889.1| - 1.4e-06 28.1 25.0 1.4e-06 28.1 17.4 2.3 1 1 2 3 3 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|385776321|ref|YP_005648889.1| - 1.5e-06 27.0 2.5 2.1e-06 26.5 1.7 1.1 1 0 0 1 1 1 1 AAA domain DivIC PF04977.10 gi|385776321|ref|YP_005648889.1| - 1.6e-06 27.5 0.8 0.13 11.7 0.0 3.2 1 1 2 3 3 3 2 Septum formation initiator MscS_porin PF12795.2 gi|385776321|ref|YP_005648889.1| - 2.1e-06 27.2 4.1 3.1e-06 26.6 2.8 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain SlyX PF04102.7 gi|385776321|ref|YP_005648889.1| - 2.2e-06 27.9 2.1 0.0028 17.9 0.1 2.5 1 1 1 2 2 2 2 SlyX CENP-F_leu_zip PF10473.4 gi|385776321|ref|YP_005648889.1| - 6e-06 26.1 1.4 0.0022 17.8 0.5 1.9 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TBPIP PF07106.8 gi|385776321|ref|YP_005648889.1| - 1e-05 25.1 4.1 0.0029 17.1 1.1 2.1 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GAS PF13851.1 gi|385776321|ref|YP_005648889.1| - 1.2e-05 24.6 0.1 1.7e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding FlaC_arch PF05377.6 gi|385776321|ref|YP_005648889.1| - 2.3e-05 24.1 7.3 0.19 11.6 0.4 3.5 1 1 1 3 3 3 2 Flagella accessory protein C (FlaC) Myosin_tail_1 PF01576.14 gi|385776321|ref|YP_005648889.1| - 2.6e-05 22.2 0.5 3.4e-05 21.8 0.3 1.0 1 0 0 1 1 1 1 Myosin tail Filament PF00038.16 gi|385776321|ref|YP_005648889.1| - 6.1e-05 22.6 0.7 0.00025 20.6 0.4 1.5 1 1 0 1 1 1 1 Intermediate filament protein IFT57 PF10498.4 gi|385776321|ref|YP_005648889.1| - 7.3e-05 21.6 0.7 0.00012 20.9 0.5 1.4 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Seryl_tRNA_N PF02403.17 gi|385776321|ref|YP_005648889.1| - 8.8e-05 22.4 2.4 0.0028 17.6 1.3 2.2 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|385776321|ref|YP_005648889.1| - 0.00012 22.2 9.2 0.035 14.3 0.6 2.8 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein CarboxypepD_reg PF13620.1 gi|385776321|ref|YP_005648889.1| - 0.00012 22.0 3.3 0.00014 21.8 0.8 2.4 2 0 0 2 2 1 1 Carboxypeptidase regulatory-like domain Spc7 PF08317.6 gi|385776321|ref|YP_005648889.1| - 0.00019 20.1 3.6 0.00044 19.0 2.5 1.5 1 1 0 1 1 1 1 Spc7 kinetochore protein APG6 PF04111.7 gi|385776321|ref|YP_005648889.1| - 0.00021 20.4 0.1 0.0003 19.9 0.0 1.1 1 0 0 1 1 1 1 Autophagy protein Apg6 DUF2730 PF10805.3 gi|385776321|ref|YP_005648889.1| - 0.00023 20.8 1.7 0.037 13.7 0.5 2.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) Laminin_II PF06009.7 gi|385776321|ref|YP_005648889.1| - 0.00024 20.8 9.3 0.023 14.4 3.1 2.2 1 1 1 2 2 2 2 Laminin Domain II DUF603 PF04645.7 gi|385776321|ref|YP_005648889.1| - 0.00028 20.8 3.4 0.0061 16.5 0.4 2.2 1 1 1 2 2 2 1 Protein of unknown function, DUF603 NTR2 PF15458.1 gi|385776321|ref|YP_005648889.1| - 0.00028 20.2 0.8 0.11 11.6 0.0 2.2 1 1 1 2 2 2 1 Nineteen complex-related protein 2 Phage_GP20 PF06810.6 gi|385776321|ref|YP_005648889.1| - 0.00035 20.0 1.2 0.0044 16.4 0.6 1.9 1 1 1 2 2 2 1 Phage minor structural protein GP20 EzrA PF06160.7 gi|385776321|ref|YP_005648889.1| - 0.0004 18.6 0.5 0.0004 18.6 0.3 1.8 2 0 0 2 2 1 1 Septation ring formation regulator, EzrA Cast PF10174.4 gi|385776321|ref|YP_005648889.1| - 0.00048 18.3 0.1 0.00074 17.7 0.1 1.2 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone WEMBL PF05701.6 gi|385776321|ref|YP_005648889.1| - 0.00051 18.6 1.6 0.00073 18.1 1.1 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light DUF3450 PF11932.3 gi|385776321|ref|YP_005648889.1| - 0.0006 19.1 1.9 0.52 9.5 0.1 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) DUF4140 PF13600.1 gi|385776321|ref|YP_005648889.1| - 0.00075 19.9 0.7 0.11 12.9 0.1 3.0 2 1 1 3 3 2 1 N-terminal domain of unknown function (DUF4140) DUF869 PF05911.6 gi|385776321|ref|YP_005648889.1| - 0.0008 17.7 0.1 0.0012 17.1 0.1 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) CCDC155 PF14662.1 gi|385776321|ref|YP_005648889.1| - 0.00081 19.0 0.2 0.0012 18.5 0.1 1.1 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 Mod_r PF07200.8 gi|385776321|ref|YP_005648889.1| - 0.00082 19.3 1.2 0.0025 17.7 0.8 1.7 1 1 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein PspA_IM30 PF04012.7 gi|385776321|ref|YP_005648889.1| - 0.00091 18.6 1.2 0.0065 15.8 0.8 2.0 1 1 1 2 2 2 1 PspA/IM30 family DUF972 PF06156.8 gi|385776321|ref|YP_005648889.1| - 0.0011 19.3 3.4 0.79 10.0 0.1 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF972) Prefoldin_2 PF01920.15 gi|385776321|ref|YP_005648889.1| - 0.0014 18.3 0.9 0.8 9.4 0.1 2.6 1 1 2 3 3 3 1 Prefoldin subunit FlxA PF14282.1 gi|385776321|ref|YP_005648889.1| - 0.0018 18.1 9.7 0.016 15.1 1.6 2.6 1 1 1 2 2 2 2 FlxA-like protein Tropomyosin_1 PF12718.2 gi|385776321|ref|YP_005648889.1| - 0.0022 17.8 0.4 1.3 8.8 0.1 1.9 1 1 1 2 2 2 0 Tropomyosin like CENP-Q PF13094.1 gi|385776321|ref|YP_005648889.1| - 0.0023 17.9 2.4 0.019 14.9 1.7 1.9 1 1 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit Tektin PF03148.9 gi|385776321|ref|YP_005648889.1| - 0.0025 16.4 2.8 0.26 9.8 0.1 2.3 1 1 1 2 2 2 2 Tektin family Cep57_MT_bd PF06657.8 gi|385776321|ref|YP_005648889.1| - 0.003 17.4 0.1 2.7 8.0 0.0 3.0 1 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 BLOC1_2 PF10046.4 gi|385776321|ref|YP_005648889.1| - 0.0032 17.5 7.1 0.095 12.8 1.3 2.6 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|385776321|ref|YP_005648889.1| - 0.0036 17.0 0.8 0.0036 17.0 0.6 2.8 2 1 1 3 3 2 1 Protein of unknown function (DUF1664) BRE1 PF08647.6 gi|385776321|ref|YP_005648889.1| - 0.0037 17.1 1.1 0.0069 16.3 0.7 1.5 1 0 0 1 1 1 1 BRE1 E3 ubiquitin ligase DUF2968 PF11180.3 gi|385776321|ref|YP_005648889.1| - 0.0042 16.4 0.2 0.0069 15.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2968) COG5 PF10392.4 gi|385776321|ref|YP_005648889.1| - 0.0044 16.9 7.1 0.19 11.6 4.7 2.2 1 1 1 2 2 2 2 Golgi transport complex subunit 5 Bacillus_HBL PF05791.6 gi|385776321|ref|YP_005648889.1| - 0.0046 16.3 7.2 0.041 13.2 1.4 2.4 1 1 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) HALZ PF02183.13 gi|385776321|ref|YP_005648889.1| - 0.0049 16.5 2.1 17 5.2 0.1 3.8 2 1 2 4 4 4 0 Homeobox associated leucine zipper Nup54 PF13874.1 gi|385776321|ref|YP_005648889.1| - 0.0052 16.4 1.3 0.0086 15.7 0.9 1.3 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 DUF1202 PF06717.6 gi|385776321|ref|YP_005648889.1| - 0.0067 15.7 1.4 0.034 13.4 0.2 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1202) Prefoldin PF02996.12 gi|385776321|ref|YP_005648889.1| - 0.0069 16.0 2.8 1.3 8.6 0.4 3.1 1 1 2 3 3 3 0 Prefoldin subunit DUF4201 PF13870.1 gi|385776321|ref|YP_005648889.1| - 0.0074 15.7 0.7 0.25 10.7 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) DUF4527 PF15030.1 gi|385776321|ref|YP_005648889.1| - 0.0075 15.6 0.1 0.013 14.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4527) HCR PF07111.7 gi|385776321|ref|YP_005648889.1| - 0.0082 14.2 0.1 0.011 13.7 0.1 1.1 1 0 0 1 1 1 1 Alpha helical coiled-coil rod protein (HCR) MAD PF05557.8 gi|385776321|ref|YP_005648889.1| - 0.0084 14.2 0.2 0.014 13.5 0.1 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein DivIVA PF05103.8 gi|385776321|ref|YP_005648889.1| - 0.0088 16.0 2.0 5.3 7.1 0.0 2.7 1 1 2 3 3 3 0 DivIVA protein MbeD_MobD PF04899.7 gi|385776321|ref|YP_005648889.1| - 0.0094 15.8 5.7 1 9.3 1.8 4.0 2 1 1 3 3 2 1 MbeD/MobD like bZIP_1 PF00170.16 gi|385776321|ref|YP_005648889.1| - 0.01 15.7 4.7 12 5.9 0.1 3.2 1 1 2 3 3 3 0 bZIP transcription factor AAA_27 PF13514.1 gi|385776321|ref|YP_005648889.1| - 0.011 13.5 0.4 0.018 12.7 0.3 1.3 1 0 0 1 1 1 0 AAA domain HOOK PF05622.7 gi|385776321|ref|YP_005648889.1| - 0.011 13.5 0.1 0.016 13.0 0.1 1.1 1 0 0 1 1 1 0 HOOK protein Fib_alpha PF08702.5 gi|385776321|ref|YP_005648889.1| - 0.012 15.7 4.5 0.097 12.8 3.3 2.1 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF1206 PF06724.6 gi|385776321|ref|YP_005648889.1| - 0.012 15.3 0.8 0.012 15.3 0.6 1.8 2 0 0 2 2 1 0 Domain of Unknown Function (DUF1206) Snapin_Pallidin PF14712.1 gi|385776321|ref|YP_005648889.1| - 0.013 15.8 3.8 0.65 10.3 1.0 2.4 1 1 1 2 2 2 0 Snapin/Pallidin Lzipper-MIP1 PF14389.1 gi|385776321|ref|YP_005648889.1| - 0.016 15.2 1.1 0.41 10.7 0.1 2.5 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Mnd1 PF03962.10 gi|385776321|ref|YP_005648889.1| - 0.017 14.8 0.1 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 Mnd1 family DUF3584 PF12128.3 gi|385776321|ref|YP_005648889.1| - 0.017 12.5 0.1 0.023 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4200 PF13863.1 gi|385776321|ref|YP_005648889.1| - 0.018 15.0 0.1 2.5 8.0 0.1 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.7 gi|385776321|ref|YP_005648889.1| - 0.018 14.7 4.2 0.13 12.0 2.9 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Nsp1_C PF05064.8 gi|385776321|ref|YP_005648889.1| - 0.02 14.5 2.3 0.063 12.9 1.6 1.7 1 1 0 1 1 1 0 Nsp1-like C-terminal region Uds1 PF15456.1 gi|385776321|ref|YP_005648889.1| - 0.02 14.8 1.1 0.24 11.4 0.7 2.1 1 1 0 1 1 1 0 Up-regulated During Septation Laminin_I PF06008.9 gi|385776321|ref|YP_005648889.1| - 0.021 14.1 7.6 0.065 12.5 4.9 1.7 1 1 1 2 2 2 0 Laminin Domain I BicD PF09730.4 gi|385776321|ref|YP_005648889.1| - 0.023 13.1 0.8 0.031 12.6 0.6 1.1 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Sec2p PF06428.6 gi|385776321|ref|YP_005648889.1| - 0.023 14.5 2.5 1.2 9.0 1.2 2.7 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p DUF812 PF05667.6 gi|385776321|ref|YP_005648889.1| - 0.023 13.2 2.1 0.061 11.8 1.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Lge1 PF11488.3 gi|385776321|ref|YP_005648889.1| - 0.025 14.7 0.5 2.8 8.1 0.1 2.3 1 1 1 2 2 2 0 Transcriptional regulatory protein LGE1 SseC PF04888.7 gi|385776321|ref|YP_005648889.1| - 0.025 13.9 0.3 0.025 13.9 0.2 3.0 3 0 0 3 3 3 0 Secretion system effector C (SseC) like family LXG PF04740.7 gi|385776321|ref|YP_005648889.1| - 0.025 14.3 2.5 0.068 12.9 1.8 1.6 1 1 0 1 1 1 0 LXG domain of WXG superfamily Spc24 PF08286.6 gi|385776321|ref|YP_005648889.1| - 0.025 14.2 5.4 12 5.6 3.7 2.7 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Med9 PF07544.8 gi|385776321|ref|YP_005648889.1| - 0.032 13.9 0.2 0.19 11.4 0.1 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF4618 PF15397.1 gi|385776321|ref|YP_005648889.1| - 0.034 13.4 3.1 0.35 10.1 2.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) EMP24_GP25L PF01105.19 gi|385776321|ref|YP_005648889.1| - 0.045 13.4 1.0 1.2 8.7 0.7 2.8 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Atg14 PF10186.4 gi|385776321|ref|YP_005648889.1| - 0.046 12.6 3.7 0.037 12.9 0.5 2.2 2 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Not3 PF04065.10 gi|385776321|ref|YP_005648889.1| - 0.049 12.8 0.3 0.1 11.8 0.2 1.4 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component FliJ PF02050.11 gi|385776321|ref|YP_005648889.1| - 0.053 13.5 0.1 0.55 10.3 0.2 2.0 1 1 2 3 3 3 0 Flagellar FliJ protein COG2 PF06148.6 gi|385776321|ref|YP_005648889.1| - 0.058 13.2 2.3 0.78 9.6 0.2 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HsbA PF12296.3 gi|385776321|ref|YP_005648889.1| - 0.059 13.2 13.8 0.46 10.3 1.3 3.2 1 1 2 3 3 3 0 Hydrophobic surface binding protein A DUF641 PF04859.7 gi|385776321|ref|YP_005648889.1| - 0.06 13.1 0.4 2.5 7.8 0.1 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DASH_Duo1 PF08651.5 gi|385776321|ref|YP_005648889.1| - 0.075 12.6 5.8 0.9 9.1 0.8 2.7 1 1 0 2 2 2 0 DASH complex subunit Duo1 CALCOCO1 PF07888.6 gi|385776321|ref|YP_005648889.1| - 0.08 11.2 0.4 0.12 10.6 0.3 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Fmp27_WPPW PF10359.4 gi|385776321|ref|YP_005648889.1| - 0.081 11.3 0.4 0.13 10.6 0.3 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Allexi_40kDa PF05549.6 gi|385776321|ref|YP_005648889.1| - 0.081 12.2 4.0 0.13 11.5 2.8 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein DASH_Dad3 PF08656.5 gi|385776321|ref|YP_005648889.1| - 0.085 12.5 9.3 2 8.1 0.7 4.0 1 1 1 2 2 2 0 DASH complex subunit Dad3 RmuC PF02646.11 gi|385776321|ref|YP_005648889.1| - 0.087 11.6 6.0 0.7 8.6 1.5 2.2 1 1 1 2 2 2 0 RmuC family AIP3 PF03915.8 gi|385776321|ref|YP_005648889.1| - 0.14 11.0 0.6 0.2 10.5 0.4 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 Cluap1 PF10234.4 gi|385776321|ref|YP_005648889.1| - 0.15 11.2 1.5 6.5 5.8 0.1 2.0 1 1 1 2 2 2 0 Clusterin-associated protein-1 COG6 PF06419.6 gi|385776321|ref|YP_005648889.1| - 0.15 10.1 5.0 0.47 8.5 2.7 1.8 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 LPP PF04728.8 gi|385776321|ref|YP_005648889.1| - 0.15 11.8 9.7 1.1 9.1 0.3 3.6 1 1 2 3 3 3 0 Lipoprotein leucine-zipper Snf7 PF03357.16 gi|385776321|ref|YP_005648889.1| - 0.16 11.3 0.7 0.29 10.5 0.5 1.4 1 0 0 1 1 1 0 Snf7 LURAP PF14854.1 gi|385776321|ref|YP_005648889.1| - 0.17 11.6 4.0 0.71 9.6 1.6 2.1 1 1 1 2 2 2 0 Leucine rich adaptor protein WXG100 PF06013.7 gi|385776321|ref|YP_005648889.1| - 0.17 11.9 1.7 32 4.6 0.0 3.0 1 1 1 2 2 2 0 Proteins of 100 residues with WXG Macoilin PF09726.4 gi|385776321|ref|YP_005648889.1| - 0.18 10.0 1.6 0.25 9.6 1.1 1.1 1 0 0 1 1 1 0 Transmembrane protein V-SNARE PF05008.10 gi|385776321|ref|YP_005648889.1| - 0.21 11.7 0.4 0.67 10.1 0.2 1.8 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus Sec34 PF04136.10 gi|385776321|ref|YP_005648889.1| - 0.22 11.2 2.8 0.43 10.2 0.5 2.3 2 1 1 3 3 2 0 Sec34-like family K-box PF01486.12 gi|385776321|ref|YP_005648889.1| - 0.23 11.2 1.3 8.8 6.1 0.0 2.7 1 1 1 2 2 2 0 K-box region DUF2594 PF10769.4 gi|385776321|ref|YP_005648889.1| - 0.23 11.5 3.4 11 6.1 0.1 3.1 1 1 1 3 3 2 0 Protein of unknown function (DUF2594) DUF904 PF06005.7 gi|385776321|ref|YP_005648889.1| - 0.26 11.5 4.9 2.5 8.4 0.8 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF904) Kinetocho_Slk19 PF12709.2 gi|385776321|ref|YP_005648889.1| - 0.27 11.3 0.5 59 3.8 0.0 3.2 1 1 2 3 3 3 0 Central kinetochore-associated XhlA PF10779.4 gi|385776321|ref|YP_005648889.1| - 0.27 11.1 8.0 2.8 7.8 1.1 3.0 1 1 1 2 2 2 0 Haemolysin XhlA Med4 PF10018.4 gi|385776321|ref|YP_005648889.1| - 0.27 10.5 2.3 1.7 7.9 1.6 1.9 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 HR1 PF02185.11 gi|385776321|ref|YP_005648889.1| - 0.28 10.9 3.2 0.68 9.7 0.3 2.5 1 1 2 3 3 3 0 Hr1 repeat Cortex-I_coil PF09304.5 gi|385776321|ref|YP_005648889.1| - 0.28 11.2 1.0 0.75 9.8 0.5 1.7 1 1 1 2 2 2 0 Cortexillin I, coiled coil Lipoprotein_7 PF01540.11 gi|385776321|ref|YP_005648889.1| - 0.31 10.0 3.5 0.13 11.2 0.8 1.5 2 0 0 2 2 1 0 Adhesin lipoprotein M_domain PF12938.2 gi|385776321|ref|YP_005648889.1| - 0.41 10.4 9.4 4.9 6.9 6.5 2.4 1 1 0 1 1 1 0 M domain of GW182 APG17 PF04108.7 gi|385776321|ref|YP_005648889.1| - 0.56 8.9 4.9 0.89 8.2 2.6 1.4 1 1 0 1 1 1 0 Autophagy protein Apg17 Rifin_STEVOR PF02009.11 gi|385776321|ref|YP_005648889.1| - 0.56 9.7 7.4 0.95 9.0 5.1 1.3 1 0 0 1 1 1 0 Rifin/stevor family Syntaxin PF00804.20 gi|385776321|ref|YP_005648889.1| - 0.58 10.3 5.1 6 7.0 3.6 2.1 1 1 0 1 1 1 0 Syntaxin Vps5 PF09325.5 gi|385776321|ref|YP_005648889.1| - 0.78 8.9 6.3 1.4 8.1 2.7 2.0 1 1 1 2 2 2 0 Vps5 C terminal like Cep57_CLD_2 PF14197.1 gi|385776321|ref|YP_005648889.1| - 0.9 9.5 2.5 9.1 6.3 0.1 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Lectin_N PF03954.9 gi|385776321|ref|YP_005648889.1| - 0.9 8.9 9.2 39 3.6 6.5 2.5 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain GLE1 PF07817.8 gi|385776321|ref|YP_005648889.1| - 1.2 7.9 3.9 6.9 5.5 2.0 1.9 1 1 1 2 2 2 0 GLE1-like protein HlyD PF00529.15 gi|385776321|ref|YP_005648889.1| - 3.5 6.8 8.3 15 4.8 5.8 1.9 1 1 0 1 1 1 0 HlyD family secretion protein Syntaxin_2 PF14523.1 gi|385776321|ref|YP_005648889.1| - 5.4 7.1 13.0 12 6.0 4.1 2.4 1 1 1 2 2 2 0 Syntaxin-like protein Mitofilin PF09731.4 gi|385776321|ref|YP_005648889.1| - 6.1 5.3 8.8 1.8 7.1 1.4 2.1 1 1 1 2 2 2 0 Mitochondrial inner membrane protein SSV1_ORF_D-335 PF07935.6 gi|385776323|ref|YP_005648891.1| - 8.9e-25 86.2 0.1 1.1e-24 85.9 0.1 1.0 1 0 0 1 1 1 1 ORF D-335-like protein Glycos_transf_1 PF00534.15 gi|385776324|ref|YP_005648892.1| - 9.4e-23 80.4 0.3 3.7e-22 78.5 0.0 2.1 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385776324|ref|YP_005648892.1| - 7.5e-16 58.5 0.0 1.6e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385776324|ref|YP_005648892.1| - 0.0021 18.2 0.0 0.0049 17.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 DNA_pol_E_B PF04042.11 gi|385776324|ref|YP_005648892.1| - 0.1 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B HTH_3 PF01381.17 gi|385776325|ref|YP_005648893.1| - 4.2e-10 39.3 0.1 8.2e-09 35.1 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|385776325|ref|YP_005648893.1| - 1.3e-07 31.5 0.2 5.4e-07 29.5 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|385776325|ref|YP_005648893.1| - 7.1e-05 22.9 0.1 0.00013 22.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|385776325|ref|YP_005648893.1| - 0.0033 17.1 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Beta-Casp PF10996.3 gi|385776326|ref|YP_005648894.1| - 4.4e-23 81.5 0.0 9.3e-23 80.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|385776326|ref|YP_005648894.1| - 1.6e-15 57.3 0.0 2.5e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|385776326|ref|YP_005648894.1| - 4.9e-11 42.2 0.1 1e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|385776326|ref|YP_005648894.1| - 3.1e-10 39.9 0.0 6.2e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|385776326|ref|YP_005648894.1| - 0.00024 20.1 0.0 0.00036 19.5 0.0 1.3 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II CheB_methylest PF01339.12 gi|385776326|ref|YP_005648894.1| - 0.043 13.2 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 CheB methylesterase tRNA-Thr_ED PF08915.6 gi|385776327|ref|YP_005648895.1| - 1.7e-53 180.2 2.2 2.3e-53 179.8 0.2 2.0 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|385776327|ref|YP_005648895.1| - 3.6e-24 84.5 1.0 7.1e-24 83.5 0.7 1.5 1 0 0 1 1 1 1 Anticodon binding domain Glycoamylase PF10091.4 gi|385776327|ref|YP_005648895.1| - 0.0032 16.5 0.0 0.0053 15.8 0.0 1.2 1 0 0 1 1 1 1 Putative glucoamylase HGTP_anticodon2 PF12745.2 gi|385776327|ref|YP_005648895.1| - 0.0048 16.0 0.8 0.0086 15.2 0.6 1.3 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs GHMP_kinases_N PF00288.21 gi|385776328|ref|YP_005648896.1| - 9.9e-14 51.1 0.0 2e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385776328|ref|YP_005648896.1| - 4.1e-09 36.5 0.1 9.6e-09 35.3 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal CheX PF13690.1 gi|385776328|ref|YP_005648896.1| - 0.098 12.5 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX SIS PF01380.17 gi|385776329|ref|YP_005648897.1| - 2.9e-42 143.3 1.3 8.1e-25 86.9 0.2 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|385776329|ref|YP_005648897.1| - 1.6e-23 83.1 0.0 4.6e-23 81.6 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|385776329|ref|YP_005648897.1| - 1.6e-21 76.4 0.6 8.2e-16 57.6 0.1 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|385776329|ref|YP_005648897.1| - 1e-20 73.7 0.0 3.4e-20 72.0 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|385776329|ref|YP_005648897.1| - 3.1e-06 26.0 0.0 5.9e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|385776329|ref|YP_005648897.1| - 5.7e-06 26.1 0.7 7.3e-05 22.5 0.0 2.7 3 0 0 3 3 3 1 SIS domain Hexapep PF00132.19 gi|385776330|ref|YP_005648898.1| - 3.7e-15 54.6 8.3 9.9e-07 28.0 0.2 5.1 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.18 gi|385776330|ref|YP_005648898.1| - 6.8e-15 55.0 0.4 3.3e-13 49.5 0.3 2.1 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385776330|ref|YP_005648898.1| - 3.1e-09 37.1 0.0 3.7e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|385776330|ref|YP_005648898.1| - 0.0017 17.8 4.4 4.3 6.9 0.4 4.2 4 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Glycos_transf_2 PF00535.21 gi|385776330|ref|YP_005648898.1| - 0.0055 16.4 0.1 0.0085 15.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.14 gi|385776330|ref|YP_005648898.1| - 0.015 14.8 0.3 0.023 14.2 0.2 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.7 gi|385776330|ref|YP_005648898.1| - 0.03 12.9 0.2 0.11 10.9 0.0 1.8 1 1 1 2 2 2 0 L-fucokinase Rifin_STEVOR PF02009.11 gi|385776331|ref|YP_005648899.1| - 1.5e-06 28.0 7.1 2.6e-06 27.2 4.9 1.4 1 0 0 1 1 1 1 Rifin/stevor family RAP1 PF07218.6 gi|385776331|ref|YP_005648899.1| - 2.1 6.3 10.8 3.4 5.6 7.5 1.3 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) OCD_Mu_crystall PF02423.10 gi|385776332|ref|YP_005648900.1| - 1.7e-45 155.1 0.1 2e-45 154.9 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family 2-Hacid_dh_C PF02826.14 gi|385776332|ref|YP_005648900.1| - 0.00021 20.4 0.1 0.00037 19.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|385776332|ref|YP_005648900.1| - 0.00032 20.8 0.1 0.00051 20.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Cob_adeno_trans PF01923.13 gi|385776333|ref|YP_005648901.1| - 2.8e-50 170.3 0.0 3.1e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Na_H_Exchanger PF00999.16 gi|385776334|ref|YP_005648902.1| - 3.5e-34 117.9 48.0 4.8e-34 117.5 33.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.23 gi|385776334|ref|YP_005648902.1| - 1.5e-06 27.8 3.1 3.1e-05 23.6 0.0 2.8 3 0 0 3 3 3 2 CBS domain Phage_integrase PF00589.17 gi|385776335|ref|YP_005648903.1| - 5.1e-37 127.1 2.7 8.5e-37 126.4 1.2 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|385776335|ref|YP_005648903.1| - 7.2e-13 48.6 0.1 1e-07 32.1 0.0 2.7 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|385776335|ref|YP_005648903.1| - 1.7e-06 28.0 0.0 6.2e-06 26.2 0.0 2.0 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain NUMOD3 PF07460.6 gi|385776335|ref|YP_005648903.1| - 0.00094 19.0 1.4 0.0013 18.5 0.2 1.8 2 0 0 2 2 2 1 NUMOD3 motif (2 copies) HCV_NS5a_C PF12941.2 gi|385776335|ref|YP_005648903.1| - 0.14 11.6 0.1 0.23 11.0 0.1 1.2 1 0 0 1 1 1 0 HCV NS5a protein C-terminal region HTH_37 PF13744.1 gi|385776335|ref|YP_005648903.1| - 0.14 11.9 1.8 0.24 11.2 0.0 2.3 4 0 0 4 4 4 0 Helix-turn-helix domain Surf_Ag_VNR PF07244.10 gi|385776335|ref|YP_005648903.1| - 0.16 12.4 1.4 1.2 9.5 1.0 2.5 1 1 0 1 1 1 0 Surface antigen variable number repeat Radical_SAM PF04055.16 gi|385776336|ref|YP_005648904.1| - 9.2e-16 58.4 0.1 1.7e-14 54.3 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385776336|ref|YP_005648904.1| - 1.8e-09 37.8 0.0 4.2e-09 36.6 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385776336|ref|YP_005648904.1| - 3.5e-09 36.6 0.0 1.6e-08 34.6 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain TBPIP_N PF15517.1 gi|385776336|ref|YP_005648904.1| - 0.0086 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 TBP-interacting protein N-terminus SPASM PF13186.1 gi|385776336|ref|YP_005648904.1| - 0.023 15.0 0.1 0.11 12.8 0.0 2.1 2 0 0 2 2 2 0 Iron-sulfur cluster-binding domain Hexapep PF00132.19 gi|385776337|ref|YP_005648905.1| - 6.4e-20 69.7 14.9 6.7e-07 28.5 1.4 4.6 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|385776337|ref|YP_005648905.1| - 1.2e-06 27.9 9.0 0.00031 20.2 0.9 3.9 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase EspA PF03433.8 gi|385776337|ref|YP_005648905.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 EspA-like secreted protein Nol1_Nop2_Fmu PF01189.12 gi|385776338|ref|YP_005648906.1| - 2e-30 106.1 0.1 2.2e-28 99.4 0.0 2.8 2 1 1 3 3 3 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|385776338|ref|YP_005648906.1| - 7.6e-08 32.0 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385776338|ref|YP_005648906.1| - 7.2e-06 26.5 0.0 1.7e-05 25.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|385776338|ref|YP_005648906.1| - 0.0004 19.8 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|385776338|ref|YP_005648906.1| - 0.0013 18.7 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF2431 PF10354.4 gi|385776338|ref|YP_005648906.1| - 0.0066 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2431) PUA PF01472.15 gi|385776338|ref|YP_005648906.1| - 0.012 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 PUA domain Methyltransf_5 PF01795.14 gi|385776338|ref|YP_005648906.1| - 0.013 14.8 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 MraW methylase family GHMP_kinases_N PF00288.21 gi|385776339|ref|YP_005648907.1| - 0.087 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385776339|ref|YP_005648907.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 GHMP kinases C terminal AMP-binding PF00501.23 gi|385776340|ref|YP_005648908.1| - 2.7e-68 230.2 0.0 3.2e-68 230.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385776340|ref|YP_005648908.1| - 8.1e-07 29.8 0.1 1.6e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thioredoxin PF00085.15 gi|385776341|ref|YP_005648909.1| - 5.4e-28 96.7 0.1 7.3e-28 96.2 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|385776341|ref|YP_005648909.1| - 6.2e-07 29.4 2.0 9.1e-05 22.5 0.1 2.5 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|385776341|ref|YP_005648909.1| - 2.6e-06 27.6 0.2 1.5e-05 25.1 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|385776341|ref|YP_005648909.1| - 3.7e-06 26.6 0.3 1.4e-05 24.8 0.0 2.0 1 1 0 2 2 2 1 Thioredoxin domain Thioredoxin_6 PF13848.1 gi|385776341|ref|YP_005648909.1| - 0.00019 21.3 1.5 0.025 14.3 0.2 2.1 1 1 1 2 2 2 2 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|385776341|ref|YP_005648909.1| - 0.00058 19.5 1.4 0.17 11.5 0.3 2.4 1 1 1 2 2 2 2 AhpC/TSA family HyaE PF07449.6 gi|385776341|ref|YP_005648909.1| - 0.0023 17.8 0.0 0.023 14.6 0.0 2.1 2 0 0 2 2 2 1 Hydrogenase-1 expression protein HyaE Redoxin PF08534.5 gi|385776341|ref|YP_005648909.1| - 0.0049 16.4 0.9 0.017 14.6 0.3 1.8 1 1 1 2 2 2 1 Redoxin Thioredoxin_7 PF13899.1 gi|385776341|ref|YP_005648909.1| - 0.0053 16.7 0.1 0.0098 15.8 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like CIDE-N PF02017.10 gi|385776341|ref|YP_005648909.1| - 0.032 14.0 0.2 0.1 12.3 0.1 1.8 2 0 0 2 2 2 0 CIDE-N domain DIM1 PF02966.11 gi|385776341|ref|YP_005648909.1| - 0.071 12.6 0.1 0.14 11.6 0.0 1.5 2 0 0 2 2 2 0 Mitosis protein DIM1 RHH_1 PF01402.16 gi|385776341|ref|YP_005648909.1| - 0.073 12.9 0.3 0.23 11.4 0.2 1.9 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family BAG PF02179.11 gi|385776341|ref|YP_005648909.1| - 0.12 12.4 0.7 0.26 11.4 0.5 1.6 1 0 0 1 1 1 0 BAG domain Thioredoxin_9 PF14595.1 gi|385776341|ref|YP_005648909.1| - 0.14 11.7 0.2 0.26 10.8 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin ABC_tran PF00005.22 gi|385776342|ref|YP_005648910.1| - 1.5e-23 83.6 0.1 2.1e-23 83.1 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|385776342|ref|YP_005648910.1| - 3.2e-08 34.1 3.9 5.6e-08 33.3 2.7 1.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|385776342|ref|YP_005648910.1| - 7.3e-08 32.7 4.6 7.6e-06 26.0 0.9 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385776342|ref|YP_005648910.1| - 3.8e-07 29.5 0.1 7.4e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|385776342|ref|YP_005648910.1| - 4.8e-05 22.3 0.0 8.7e-05 21.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|385776342|ref|YP_005648910.1| - 0.00054 20.0 0.5 0.0013 18.8 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385776342|ref|YP_005648910.1| - 0.00067 20.4 0.7 0.001 19.8 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385776342|ref|YP_005648910.1| - 0.0013 18.4 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|385776342|ref|YP_005648910.1| - 0.0021 17.5 0.1 0.024 14.0 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|385776342|ref|YP_005648910.1| - 0.0026 17.4 0.5 0.023 14.3 0.1 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|385776342|ref|YP_005648910.1| - 0.0029 17.4 0.9 0.021 14.7 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385776342|ref|YP_005648910.1| - 0.003 17.5 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|385776342|ref|YP_005648910.1| - 0.0046 15.8 0.7 0.015 14.2 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain DUF258 PF03193.11 gi|385776342|ref|YP_005648910.1| - 0.005 16.0 0.0 0.0071 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|385776342|ref|YP_005648910.1| - 0.0053 16.0 2.7 0.0059 15.8 0.6 1.8 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.10 gi|385776342|ref|YP_005648910.1| - 0.0064 16.2 1.0 0.029 14.0 0.1 2.2 2 1 0 2 2 2 1 NTPase KAP_NTPase PF07693.9 gi|385776342|ref|YP_005648910.1| - 0.0064 15.5 0.1 0.0074 15.3 0.0 1.1 1 0 0 1 1 1 1 KAP family P-loop domain AAA_15 PF13175.1 gi|385776342|ref|YP_005648910.1| - 0.0068 15.4 13.0 0.028 13.4 9.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|385776342|ref|YP_005648910.1| - 0.0074 16.5 3.8 0.022 15.0 2.6 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|385776342|ref|YP_005648910.1| - 0.013 15.1 0.1 0.02 14.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|385776342|ref|YP_005648910.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|385776342|ref|YP_005648910.1| - 0.023 13.3 0.6 0.04 12.5 0.4 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|385776342|ref|YP_005648910.1| - 0.025 14.2 1.0 0.054 13.1 0.1 1.7 1 1 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|385776342|ref|YP_005648910.1| - 0.026 13.6 0.1 0.28 10.2 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.18 gi|385776342|ref|YP_005648910.1| - 0.029 14.3 2.4 0.041 13.8 1.6 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|385776342|ref|YP_005648910.1| - 0.033 14.6 0.2 0.09 13.2 0.1 1.9 1 1 1 2 2 2 0 Miro-like protein AAA_33 PF13671.1 gi|385776342|ref|YP_005648910.1| - 0.035 14.0 0.0 0.11 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Thioredoxin_8 PF13905.1 gi|385776342|ref|YP_005648910.1| - 0.037 14.1 0.5 0.12 12.5 0.2 1.9 1 1 1 2 2 2 0 Thioredoxin-like DUF927 PF06048.6 gi|385776342|ref|YP_005648910.1| - 0.06 12.6 0.0 0.54 9.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF927) MutS_V PF00488.16 gi|385776342|ref|YP_005648910.1| - 0.081 12.3 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 MutS domain V PRK PF00485.13 gi|385776342|ref|YP_005648910.1| - 0.094 12.2 0.2 0.12 11.9 0.1 1.5 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FtsK_SpoIIIE PF01580.13 gi|385776342|ref|YP_005648910.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Dynamin_N PF00350.18 gi|385776342|ref|YP_005648910.1| - 0.21 11.3 4.1 1.2 8.9 2.8 2.0 1 1 0 1 1 1 0 Dynamin family Gln-synt_C PF00120.19 gi|385776343|ref|YP_005648911.1| - 2.8e-98 328.2 0.0 3.4e-98 327.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|385776343|ref|YP_005648911.1| - 7.6e-25 86.3 0.0 1.7e-24 85.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain HTH_24 PF13412.1 gi|385776344|ref|YP_005648912.1| - 4.9e-08 32.2 0.2 4.9e-08 32.2 0.1 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|385776344|ref|YP_005648912.1| - 1.7e-07 30.8 0.1 4.6e-07 29.4 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|385776344|ref|YP_005648912.1| - 7.4e-05 22.3 0.1 0.00016 21.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|385776344|ref|YP_005648912.1| - 0.00072 19.3 0.0 0.0019 17.9 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|385776344|ref|YP_005648912.1| - 0.0013 18.3 0.9 0.0013 18.3 0.6 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|385776344|ref|YP_005648912.1| - 0.011 15.6 0.1 0.039 13.9 0.1 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|385776344|ref|YP_005648912.1| - 0.016 14.7 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|385776344|ref|YP_005648912.1| - 0.019 14.4 1.2 0.025 14.0 0.1 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit LysR_substrate PF03466.15 gi|385776344|ref|YP_005648912.1| - 0.041 12.9 0.0 0.08 12.0 0.0 1.4 1 0 0 1 1 1 0 LysR substrate binding domain Cdc6_C PF09079.6 gi|385776344|ref|YP_005648912.1| - 0.052 13.2 0.1 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal GntR PF00392.16 gi|385776344|ref|YP_005648912.1| - 0.053 12.9 0.2 0.12 11.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rio2_N PF09202.6 gi|385776344|ref|YP_005648912.1| - 0.063 13.3 0.1 0.18 11.9 0.0 1.8 1 0 0 1 1 1 0 Rio2, N-terminal FeoC PF09012.5 gi|385776344|ref|YP_005648912.1| - 0.092 12.4 0.3 2.8 7.7 0.1 2.4 2 0 0 2 2 2 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|385776344|ref|YP_005648912.1| - 0.1 12.7 0.2 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|385776344|ref|YP_005648912.1| - 0.11 12.8 0.1 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|385776344|ref|YP_005648912.1| - 1.9 8.6 5.3 0.84 9.8 0.1 2.9 3 1 1 4 4 3 0 Helix-turn-helix domain GTP_cyclohydroI PF01227.17 gi|385776345|ref|YP_005648913.1| - 4.6e-65 218.2 0.0 5.3e-65 218.0 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I FlpD PF02662.11 gi|385776345|ref|YP_005648913.1| - 0.065 12.9 0.1 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Peptidase_M24 PF00557.19 gi|385776346|ref|YP_005648914.1| - 6.7e-67 225.0 1.0 9.4e-67 224.5 0.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|385776346|ref|YP_005648914.1| - 6e-10 39.7 0.0 1e-09 38.9 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Radical_SAM PF04055.16 gi|385776347|ref|YP_005648915.1| - 3.2e-27 95.7 0.2 5e-26 91.8 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|385776347|ref|YP_005648915.1| - 1.2e-26 92.8 0.0 2e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|385776347|ref|YP_005648915.1| - 1.2e-08 35.1 0.1 1.2e-07 31.9 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385776347|ref|YP_005648915.1| - 8.6e-07 29.0 0.1 2.9e-06 27.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Lar_restr_allev PF14354.1 gi|385776348|ref|YP_005648916.1| - 0.0013 18.9 0.0 0.0018 18.4 0.0 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|385776348|ref|YP_005648916.1| - 0.0051 16.5 2.2 0.015 15.1 1.8 1.6 1 1 1 2 2 2 2 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|385776348|ref|YP_005648916.1| - 0.0056 16.1 1.8 0.13 11.7 0.1 2.5 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|385776348|ref|YP_005648916.1| - 0.0063 15.6 1.9 0.26 10.5 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385776348|ref|YP_005648916.1| - 0.007 15.6 0.4 0.29 10.5 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc-ribbons_6 PF07191.7 gi|385776348|ref|YP_005648916.1| - 0.013 15.3 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-ISL3 PF14690.1 gi|385776348|ref|YP_005648916.1| - 0.015 15.3 0.1 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|385776348|ref|YP_005648916.1| - 0.016 14.6 0.9 1.8 8.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385776348|ref|YP_005648916.1| - 0.016 15.1 1.0 0.35 10.8 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|385776348|ref|YP_005648916.1| - 0.025 14.0 0.6 3.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|385776348|ref|YP_005648916.1| - 0.028 13.6 0.2 4.5 6.5 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger GFA PF04828.9 gi|385776348|ref|YP_005648916.1| - 0.057 13.3 0.6 0.45 10.4 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Prok-RING_1 PF14446.1 gi|385776348|ref|YP_005648916.1| - 0.06 13.0 0.3 5.4 6.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-HIT PF04438.11 gi|385776348|ref|YP_005648916.1| - 0.06 13.0 6.0 0.73 9.5 1.0 2.1 2 0 0 2 2 2 0 HIT zinc finger Ogr_Delta PF04606.7 gi|385776348|ref|YP_005648916.1| - 0.062 12.9 3.9 0.91 9.2 2.8 2.2 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger DUF2296 PF10058.4 gi|385776348|ref|YP_005648916.1| - 0.063 13.0 4.4 0.65 9.7 3.0 2.1 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_ribbon_recom PF13408.1 gi|385776348|ref|YP_005648916.1| - 0.064 13.5 0.4 0.086 13.1 0.3 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF3797 PF12677.2 gi|385776348|ref|YP_005648916.1| - 0.067 12.8 0.3 0.7 9.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) DZR PF12773.2 gi|385776348|ref|YP_005648916.1| - 0.079 12.7 1.1 0.23 11.3 0.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF329 PF03884.9 gi|385776348|ref|YP_005648916.1| - 0.088 12.3 0.2 12 5.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DNA_ligase_ZBD PF03119.11 gi|385776348|ref|YP_005648916.1| - 0.092 12.4 1.6 0.39 10.4 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin PF00301.15 gi|385776348|ref|YP_005648916.1| - 0.13 12.1 0.2 3.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin zf-RING_3 PF14369.1 gi|385776348|ref|YP_005648916.1| - 0.14 12.2 1.8 6.5 6.8 0.1 2.2 1 1 1 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|385776348|ref|YP_005648916.1| - 0.26 10.9 2.3 6.4 6.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|385776348|ref|YP_005648916.1| - 0.34 10.4 2.7 3.8 7.1 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-Di19 PF05605.7 gi|385776348|ref|YP_005648916.1| - 0.4 10.8 1.7 12 6.1 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-CSL PF05207.8 gi|385776348|ref|YP_005648916.1| - 0.57 9.7 2.3 0.5 9.9 0.1 1.9 1 1 1 2 2 2 0 CSL zinc finger zf-IS66 PF13005.2 gi|385776348|ref|YP_005648916.1| - 1.2 9.1 4.1 6.8 6.7 1.4 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 WaaY PF06176.6 gi|385776349|ref|YP_005648917.1| - 0.012 14.8 0.6 0.018 14.2 0.3 1.5 1 1 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) RIO1 PF01163.17 gi|385776349|ref|YP_005648917.1| - 0.072 12.4 0.2 0.16 11.3 0.1 1.6 1 1 1 2 2 2 0 RIO1 family PALP PF00291.20 gi|385776351|ref|YP_005648919.1| - 9e-52 176.2 0.0 1.1e-51 175.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TusA PF01206.12 gi|385776352|ref|YP_005648920.1| - 9.6e-07 28.3 0.0 1.2e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.1 gi|385776353|ref|YP_005648921.1| - 5.8e-12 45.6 0.0 2.9e-10 40.1 0.0 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DUF711 PF05167.7 gi|385776354|ref|YP_005648922.1| - 4.2e-76 256.2 0.0 5.3e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Antitoxin-MazE PF04014.13 gi|385776355|ref|YP_005648923.1| - 7.4e-09 35.1 0.0 2.3e-08 33.5 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|385776355|ref|YP_005648923.1| - 1e-06 29.0 15.1 2.5e-06 27.8 3.3 2.5 2 0 0 2 2 2 2 PhoU domain Gp-FAR-1 PF05823.7 gi|385776355|ref|YP_005648923.1| - 0.026 14.4 0.7 0.56 10.1 0.1 2.3 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) CENP-R PF06729.7 gi|385776355|ref|YP_005648923.1| - 0.034 13.8 0.2 0.13 11.9 0.0 2.0 1 1 1 2 2 2 0 Kinetochore component, CENP-R Maelstrom PF13017.1 gi|385776355|ref|YP_005648923.1| - 0.22 10.9 2.0 0.34 10.3 0.3 2.0 1 1 2 3 3 3 0 piRNA pathway germ-plasm component Ded_cyto PF06920.8 gi|385776355|ref|YP_005648923.1| - 0.3 10.3 1.9 0.44 9.8 0.1 2.0 2 0 0 2 2 2 0 Dedicator of cytokinesis QRPTase_C PF01729.14 gi|385776356|ref|YP_005648924.1| - 6.3e-21 74.6 0.0 8.5e-21 74.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|385776356|ref|YP_005648924.1| - 0.00044 20.0 0.0 0.00078 19.2 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribosomal_S19e PF01090.14 gi|385776357|ref|YP_005648925.1| - 1.2e-52 177.0 0.0 1.4e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e dsDNA_bind PF01984.15 gi|385776358|ref|YP_005648926.1| - 1.2e-30 105.6 14.9 1.5e-30 105.3 10.3 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SurA_N PF09312.6 gi|385776358|ref|YP_005648926.1| - 0.087 12.6 3.7 0.096 12.5 0.6 2.0 1 1 1 2 2 2 0 SurA N-terminal domain 4HB_MCP_1 PF12729.2 gi|385776358|ref|YP_005648926.1| - 0.096 12.0 6.4 0.12 11.7 4.4 1.1 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Phage_B PF02304.10 gi|385776358|ref|YP_005648926.1| - 0.49 10.7 3.8 0.17 12.1 0.9 1.6 2 0 0 2 2 2 0 Scaffold protein B Acetyltransf_6 PF13480.1 gi|385776358|ref|YP_005648926.1| - 1.1 9.2 3.3 28 4.6 1.3 2.2 1 1 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF4355 PF14265.1 gi|385776358|ref|YP_005648926.1| - 1.4 8.8 12.7 1.9 8.4 8.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4355) Ribosomal_L39 PF00832.15 gi|385776359|ref|YP_005648927.1| - 2.7e-22 77.9 6.6 3.6e-22 77.5 4.6 1.2 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|385776360|ref|YP_005648928.1| - 1.2e-14 53.7 3.7 1.4e-14 53.4 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|385776361|ref|YP_005648929.1| - 6.8e-73 244.0 4.7 8e-73 243.7 3.2 1.0 1 0 0 1 1 1 1 eIF-6 family Nicastrin PF05450.10 gi|385776361|ref|YP_005648929.1| - 0.036 13.3 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 Nicastrin Ribosomal_L18ae PF01775.12 gi|385776362|ref|YP_005648930.1| - 3.6e-09 36.5 1.3 9.3e-09 35.2 0.8 1.6 1 1 1 2 2 2 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|385776363|ref|YP_005648931.1| - 5.6e-28 97.0 4.0 6.6e-28 96.7 2.8 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|385776363|ref|YP_005648931.1| - 0.002 17.8 5.3 0.0061 16.3 0.5 2.1 2 0 0 2 2 2 1 Prefoldin subunit Lyase_1 PF00206.15 gi|385776363|ref|YP_005648931.1| - 0.0049 16.1 0.4 0.0055 15.9 0.3 1.2 1 0 0 1 1 1 1 Lyase APG17 PF04108.7 gi|385776363|ref|YP_005648931.1| - 0.036 12.8 3.3 0.19 10.4 0.4 2.0 2 0 0 2 2 2 0 Autophagy protein Apg17 DUF1216 PF06746.6 gi|385776363|ref|YP_005648931.1| - 0.099 12.4 0.5 1.8 8.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1216) Sec8_exocyst PF04048.9 gi|385776363|ref|YP_005648931.1| - 0.12 12.0 4.0 0.25 10.9 0.6 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain DUF2096 PF09869.4 gi|385776363|ref|YP_005648931.1| - 0.12 12.2 1.1 3.4 7.5 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2096) Fib_alpha PF08702.5 gi|385776363|ref|YP_005648931.1| - 0.12 12.4 5.4 0.078 13.1 1.1 1.9 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Snf7 PF03357.16 gi|385776363|ref|YP_005648931.1| - 0.15 11.4 6.2 1.6 8.1 2.0 2.2 2 0 0 2 2 2 0 Snf7 eIF3_N PF09440.5 gi|385776363|ref|YP_005648931.1| - 0.18 11.9 1.4 14 5.8 0.4 2.1 2 0 0 2 2 2 0 eIF3 subunit 6 N terminal domain Reo_sigmaC PF04582.7 gi|385776363|ref|YP_005648931.1| - 0.2 10.8 3.3 1.6 7.8 0.4 2.0 1 1 0 2 2 2 0 Reovirus sigma C capsid protein DUF2130 PF09903.4 gi|385776363|ref|YP_005648931.1| - 0.2 10.3 9.1 0.71 8.5 1.9 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) DUF4140 PF13600.1 gi|385776363|ref|YP_005648931.1| - 0.21 12.0 1.8 6.1 7.3 0.0 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Spc7 PF08317.6 gi|385776363|ref|YP_005648931.1| - 0.37 9.4 5.9 0.89 8.1 0.8 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF1759 PF03564.10 gi|385776363|ref|YP_005648931.1| - 0.41 10.4 3.1 0.28 10.9 0.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) IncA PF04156.9 gi|385776363|ref|YP_005648931.1| - 0.58 9.7 7.5 1.2 8.6 0.1 2.0 2 0 0 2 2 2 0 IncA protein DUF1664 PF07889.7 gi|385776363|ref|YP_005648931.1| - 0.61 9.8 3.7 1.3 8.8 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) CorA PF01544.13 gi|385776363|ref|YP_005648931.1| - 0.67 8.9 4.0 1.9 7.4 0.3 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Spc24 PF08286.6 gi|385776363|ref|YP_005648931.1| - 1.1 9.0 6.0 1.4 8.6 1.6 2.0 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 V-ATPase_C PF03223.10 gi|385776363|ref|YP_005648931.1| - 1.3 7.8 4.5 4.4 6.1 0.8 2.0 2 0 0 2 2 2 0 V-ATPase subunit C BLOC1_2 PF10046.4 gi|385776363|ref|YP_005648931.1| - 1.9 8.6 8.1 6.8 6.9 1.1 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SRP54 PF00448.17 gi|385776364|ref|YP_005648932.1| - 5.1e-71 238.1 0.0 8e-71 237.5 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|385776364|ref|YP_005648932.1| - 1.8e-13 50.3 5.1 1.8e-13 50.3 3.5 1.9 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|385776364|ref|YP_005648932.1| - 8.7e-08 32.3 0.1 2.6e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|385776364|ref|YP_005648932.1| - 2e-06 26.7 0.1 0.00019 20.3 0.1 2.4 1 1 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|385776364|ref|YP_005648932.1| - 5.8e-05 22.5 1.0 8.3e-05 22.0 0.1 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|385776364|ref|YP_005648932.1| - 0.00029 20.5 0.2 0.0017 18.0 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|385776364|ref|YP_005648932.1| - 0.0003 20.9 0.0 0.0011 19.1 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|385776364|ref|YP_005648932.1| - 0.00042 19.9 0.0 0.00062 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|385776364|ref|YP_005648932.1| - 0.0013 18.5 3.0 0.28 10.8 0.1 3.2 2 1 1 3 3 3 1 NTPase CmcI PF04989.7 gi|385776364|ref|YP_005648932.1| - 0.0026 17.1 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 Cephalosporin hydroxylase CbiA PF01656.18 gi|385776364|ref|YP_005648932.1| - 0.0031 16.9 2.4 0.0031 16.9 1.7 2.7 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|385776364|ref|YP_005648932.1| - 0.0037 17.1 0.0 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|385776364|ref|YP_005648932.1| - 0.0056 16.5 1.5 0.04 13.8 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_31 PF13614.1 gi|385776364|ref|YP_005648932.1| - 0.0094 15.8 1.5 6.1 6.7 0.0 3.3 3 1 0 3 3 3 0 AAA domain DUF445 PF04286.7 gi|385776364|ref|YP_005648932.1| - 0.013 15.0 1.1 0.015 14.8 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF258 PF03193.11 gi|385776364|ref|YP_005648932.1| - 0.013 14.7 0.0 0.025 13.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|385776364|ref|YP_005648932.1| - 0.019 15.7 2.8 0.059 14.1 0.1 2.4 2 1 0 2 2 2 0 AAA domain DUF3919 PF13057.1 gi|385776364|ref|YP_005648932.1| - 0.02 14.3 2.4 0.032 13.7 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3919) Arch_ATPase PF01637.13 gi|385776364|ref|YP_005648932.1| - 0.021 14.5 0.2 0.021 14.5 0.2 2.4 1 1 1 2 2 2 0 Archaeal ATPase Thymidylate_kin PF02223.12 gi|385776364|ref|YP_005648932.1| - 0.028 13.8 0.2 0.15 11.4 0.0 2.3 2 1 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|385776364|ref|YP_005648932.1| - 0.038 13.0 0.1 0.092 11.8 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin DUF2075 PF09848.4 gi|385776364|ref|YP_005648932.1| - 0.042 12.8 0.0 0.076 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TIR-like PF10137.4 gi|385776364|ref|YP_005648932.1| - 0.042 13.4 0.9 1.2 8.7 0.0 3.0 2 1 2 4 4 4 0 Predicted nucleotide-binding protein containing TIR-like domain AAA_24 PF13479.1 gi|385776364|ref|YP_005648932.1| - 0.051 13.1 0.3 0.17 11.4 0.2 2.0 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|385776364|ref|YP_005648932.1| - 0.06 12.3 1.0 0.15 11.0 0.0 2.1 3 0 0 3 3 3 0 Anion-transporting ATPase CO_dh PF02552.11 gi|385776364|ref|YP_005648932.1| - 0.073 12.6 0.4 0.23 11.0 0.1 1.9 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit AAA_28 PF13521.1 gi|385776364|ref|YP_005648932.1| - 0.14 12.0 0.0 0.34 10.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF4559 PF15112.1 gi|385776364|ref|YP_005648932.1| - 2.3 7.2 4.7 3.3 6.7 2.8 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) DUF793 PF05633.6 gi|385776364|ref|YP_005648932.1| - 3.5 6.2 6.0 5.4 5.6 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF793) Virul_fac_BrkB PF03631.10 gi|385776365|ref|YP_005648933.1| - 0.0042 16.4 1.1 0.0045 16.3 0.7 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Synaptobrevin PF00957.16 gi|385776365|ref|YP_005648933.1| - 0.14 11.7 0.2 0.15 11.7 0.1 1.2 1 0 0 1 1 1 0 Synaptobrevin Spt5-NGN PF03439.8 gi|385776366|ref|YP_005648934.1| - 8.1e-22 76.7 0.1 1.6e-21 75.8 0.0 1.5 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|385776366|ref|YP_005648934.1| - 2.9e-07 29.9 0.4 2.9e-07 29.9 0.3 2.1 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|385776366|ref|YP_005648934.1| - 0.023 14.9 0.1 0.061 13.5 0.0 1.8 2 1 0 2 2 2 0 Transcription termination factor nusG Ribosomal_L11 PF00298.14 gi|385776367|ref|YP_005648935.1| - 6.2e-22 77.5 3.1 1.3e-21 76.5 2.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|385776367|ref|YP_005648935.1| - 4.5e-21 74.0 0.7 9.7e-21 72.9 0.4 1.7 1 1 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.16 gi|385776368|ref|YP_005648936.1| - 1.5e-39 135.6 3.0 1.7e-39 135.4 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|385776369|ref|YP_005648937.1| - 2.1e-25 88.5 1.5 1.1e-24 86.2 0.4 2.4 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|385776369|ref|YP_005648937.1| - 1.6e-06 28.4 4.1 4.3e-06 27.0 2.8 1.8 1 0 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_60s PF00428.14 gi|385776370|ref|YP_005648938.1| - 8.5e-19 67.7 13.5 9.9e-19 67.5 9.4 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|385776370|ref|YP_005648938.1| - 0.023 14.5 3.2 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF4424 PF14415.1 gi|385776370|ref|YP_005648938.1| - 0.095 12.1 0.7 0.11 11.9 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4424) DUF3323 PF11796.3 gi|385776370|ref|YP_005648938.1| - 0.11 11.8 2.4 0.17 11.2 1.6 1.4 1 1 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) DUF1682 PF07946.9 gi|385776370|ref|YP_005648938.1| - 0.26 10.1 3.4 0.29 9.9 2.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) tRNA-synt_2c PF01411.14 gi|385776371|ref|YP_005648939.1| - 2.9e-112 375.7 0.0 7.6e-112 374.3 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|385776371|ref|YP_005648939.1| - 4.4e-14 52.0 0.4 1e-13 50.9 0.3 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|385776371|ref|YP_005648939.1| - 0.01 15.5 0.1 0.023 14.4 0.0 1.6 1 0 0 1 1 1 0 DHHA1 domain Rpr2 PF04032.11 gi|385776371|ref|YP_005648939.1| - 0.094 12.6 0.5 0.24 11.2 0.3 1.7 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Reo_sigma1 PF01664.11 gi|385776371|ref|YP_005648939.1| - 0.099 11.7 0.4 3 6.8 0.0 2.5 3 0 0 3 3 3 0 Reovirus viral attachment protein sigma 1 DUF434 PF04256.7 gi|385776372|ref|YP_005648940.1| - 2.3e-23 81.3 1.1 4.3e-23 80.4 0.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Arg_repressor PF01316.16 gi|385776372|ref|YP_005648940.1| - 0.2 11.2 0.2 0.2 11.2 0.1 2.0 2 1 0 2 2 2 0 Arginine repressor, DNA binding domain TarH PF02203.10 gi|385776374|ref|YP_005648942.1| - 0.02 14.7 4.0 0.036 13.9 2.8 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue DivIC PF04977.10 gi|385776374|ref|YP_005648942.1| - 0.21 11.1 3.6 0.54 9.7 2.5 1.6 1 0 0 1 1 1 0 Septum formation initiator DUF4231 PF14015.1 gi|385776374|ref|YP_005648942.1| - 0.21 11.5 3.9 0.16 11.9 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DnaJ-X PF14308.1 gi|385776374|ref|YP_005648942.1| - 0.34 10.1 3.5 0.55 9.4 2.4 1.2 1 0 0 1 1 1 0 X-domain of DnaJ-containing ThiI PF02568.9 gi|385776375|ref|YP_005648943.1| - 3e-52 176.9 0.3 7e-52 175.7 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|385776375|ref|YP_005648943.1| - 5.3e-20 71.7 2.6 5.3e-20 71.7 1.8 1.7 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|385776375|ref|YP_005648943.1| - 3.4e-06 26.4 0.0 0.00089 18.6 0.0 2.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|385776375|ref|YP_005648943.1| - 0.00035 19.5 0.6 0.015 14.2 0.0 2.4 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.15 gi|385776375|ref|YP_005648943.1| - 0.0029 17.1 0.0 0.051 13.0 0.0 2.2 1 1 0 1 1 1 1 PP-loop family ATP_bind_4 PF01902.12 gi|385776375|ref|YP_005648943.1| - 0.0075 15.6 0.1 0.092 12.1 0.0 2.3 2 0 0 2 2 2 1 ATP-binding region NAD_binding_5 PF07994.7 gi|385776376|ref|YP_005648944.1| - 1.6e-48 165.7 0.0 6.1e-48 163.8 0.0 1.9 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|385776376|ref|YP_005648944.1| - 7e-21 74.1 0.1 2.1e-20 72.6 0.0 1.8 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase Oxidored_q1 PF00361.15 gi|385776377|ref|YP_005648945.1| - 4.3e-43 147.5 29.7 4.3e-43 147.5 20.6 2.6 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|385776378|ref|YP_005648946.1| - 5.3e-83 278.3 72.5 9.8e-49 166.0 25.2 7.8 6 2 1 7 7 7 3 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|385776378|ref|YP_005648946.1| - 1.9e-06 27.3 8.5 0.00018 20.9 0.8 6.2 7 0 0 7 7 7 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2371 PF10177.4 gi|385776378|ref|YP_005648946.1| - 2.3 8.1 4.5 4 7.3 0.1 2.9 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Oxidored_q2 PF00420.19 gi|385776379|ref|YP_005648947.1| - 5.1e-11 42.0 7.4 5.9e-11 41.8 5.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TspO_MBR PF03073.10 gi|385776379|ref|YP_005648947.1| - 0.065 12.7 4.3 0.1 12.1 3.0 1.4 1 1 0 1 1 1 0 TspO/MBR family Oxidored_q3 PF00499.15 gi|385776380|ref|YP_005648948.1| - 9.5e-12 44.8 17.5 1.3e-11 44.5 12.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF998 PF06197.8 gi|385776380|ref|YP_005648948.1| - 0.23 10.7 17.5 0.035 13.4 9.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF998) Fer4 PF00037.22 gi|385776381|ref|YP_005648949.1| - 6.9e-15 53.9 12.8 3.1e-09 36.0 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385776381|ref|YP_005648949.1| - 7.3e-11 41.7 6.6 1.3e-10 40.9 4.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385776381|ref|YP_005648949.1| - 2e-10 40.8 9.9 3.5e-10 40.0 6.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385776381|ref|YP_005648949.1| - 2.5e-10 39.7 12.8 8.7e-06 25.3 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385776381|ref|YP_005648949.1| - 1.7e-09 37.2 6.2 2.9e-09 36.5 4.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385776381|ref|YP_005648949.1| - 2e-08 34.3 9.0 3.5e-08 33.5 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385776381|ref|YP_005648949.1| - 1.4e-07 31.0 11.5 0.00033 20.3 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385776381|ref|YP_005648949.1| - 1.4e-07 32.1 5.9 0.00021 21.9 5.3 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|385776381|ref|YP_005648949.1| - 5.7e-07 29.7 0.1 0.022 15.1 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385776381|ref|YP_005648949.1| - 4.7e-06 26.4 9.9 0.0078 16.4 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|385776381|ref|YP_005648949.1| - 9.7e-06 25.5 16.4 0.00039 20.3 6.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385776381|ref|YP_005648949.1| - 6.3e-05 23.2 18.3 0.0066 16.9 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385776381|ref|YP_005648949.1| - 0.0032 18.0 9.4 0.062 13.8 0.3 2.7 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|385776381|ref|YP_005648949.1| - 0.0045 17.3 14.5 0.11 12.9 2.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385776381|ref|YP_005648949.1| - 0.18 12.2 11.6 0.69 10.3 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|385776382|ref|YP_005648950.1| - 4.6e-52 177.0 24.6 1.8e-49 168.4 17.1 2.0 1 1 0 1 1 1 1 NADH dehydrogenase TMEM18 PF14770.1 gi|385776382|ref|YP_005648950.1| - 5.6 6.5 10.6 4.4 6.8 0.2 3.2 3 0 0 3 3 3 0 Transmembrane protein 18 Complex1_49kDa PF00346.14 gi|385776383|ref|YP_005648951.1| - 6.4e-62 209.0 0.0 7.7e-62 208.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|385776384|ref|YP_005648952.1| - 2.7e-33 114.2 0.0 3.7e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Mac-1 PF09028.5 gi|385776384|ref|YP_005648952.1| - 0.022 13.5 0.1 0.03 13.0 0.0 1.1 1 0 0 1 1 1 0 Mac 1 Oxidored_q4 PF00507.14 gi|385776385|ref|YP_005648953.1| - 1.3e-08 34.5 3.2 1.6e-08 34.2 2.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YqhR PF11085.3 gi|385776385|ref|YP_005648953.1| - 0.11 11.9 1.5 0.17 11.3 1.1 1.3 1 0 0 1 1 1 0 Conserved membrane protein YqhR Thy1 PF02511.10 gi|385776386|ref|YP_005648954.1| - 4e-65 218.7 0.9 4.9e-65 218.4 0.6 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DUF2175 PF09943.4 gi|385776387|ref|YP_005648955.1| - 2.4e-30 104.5 2.7 2.6e-30 104.4 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) V-SNARE PF05008.10 gi|385776387|ref|YP_005648955.1| - 0.043 13.9 5.4 0.17 12.1 3.7 1.8 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Vps39_2 PF10367.4 gi|385776387|ref|YP_005648955.1| - 0.082 13.0 1.0 0.39 10.9 0.0 2.0 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 Unstab_antitox PF09720.5 gi|385776387|ref|YP_005648955.1| - 0.096 12.3 0.9 0.25 11.0 0.6 1.7 1 0 0 1 1 1 0 Putative addiction module component DUF1507 PF07408.6 gi|385776387|ref|YP_005648955.1| - 0.3 10.8 2.4 2.2 8.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1507) C5-epim_C PF06662.8 gi|385776388|ref|YP_005648956.1| - 0.002 17.4 0.6 2.1 7.5 0.0 3.6 3 1 1 4 4 4 1 D-glucuronyl C5-epimerase C-terminus Thioredoxin_2 PF13098.1 gi|385776388|ref|YP_005648956.1| - 0.032 14.4 0.4 0.098 12.8 0.2 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain Glyco_hydro_47 PF01532.15 gi|385776388|ref|YP_005648956.1| - 0.099 11.2 0.1 2.7 6.5 0.0 2.1 1 1 1 2 2 2 0 Glycosyl hydrolase family 47 Thioredoxin_7 PF13899.1 gi|385776388|ref|YP_005648956.1| - 0.16 11.9 0.0 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like DUF364 PF04016.7 gi|385776389|ref|YP_005648957.1| - 2.3e-24 85.4 0.0 3.3e-24 84.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|385776389|ref|YP_005648957.1| - 2.1e-16 59.7 0.0 4.1e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) NTP_transferase PF00483.18 gi|385776390|ref|YP_005648958.1| - 4.5e-32 111.3 0.0 5.8e-32 110.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|385776390|ref|YP_005648958.1| - 1.1e-10 40.5 4.3 7.8e-05 22.0 0.4 3.3 1 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|385776390|ref|YP_005648958.1| - 1.1e-08 35.2 0.0 1.5e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Sod_Fe_C PF02777.13 gi|385776391|ref|YP_005648959.1| - 3.1e-39 133.0 0.9 5.4e-39 132.3 0.6 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|385776391|ref|YP_005648959.1| - 2.2e-29 101.5 0.1 2.2e-29 101.5 0.1 2.1 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF948 PF06103.6 gi|385776392|ref|YP_005648960.1| - 0.089 12.6 9.4 11 5.9 0.3 5.2 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) TusA PF01206.12 gi|385776393|ref|YP_005648961.1| - 6.4e-05 22.4 0.1 8.2e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Sulfurtransferase TusA Thioredoxin_3 PF13192.1 gi|385776394|ref|YP_005648962.1| - 2.1e-09 37.0 0.0 4e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|385776394|ref|YP_005648962.1| - 0.00031 20.6 0.0 0.0012 18.8 0.0 2.1 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|385776394|ref|YP_005648962.1| - 0.0082 16.1 0.0 0.052 13.5 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin DUF3870 PF12986.2 gi|385776394|ref|YP_005648962.1| - 0.032 14.4 0.1 0.086 13.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3870) Thioredoxin_2 PF13098.1 gi|385776394|ref|YP_005648962.1| - 0.044 13.9 0.2 2.3 8.4 0.0 2.5 1 1 1 2 2 2 0 Thioredoxin-like domain DEAD_2 PF06733.10 gi|385776395|ref|YP_005648963.1| - 2.6e-30 105.1 0.0 5.6e-30 104.0 0.0 1.6 1 0 0 1 1 1 1 DEAD_2 Helicase_C_2 PF13307.1 gi|385776395|ref|YP_005648963.1| - 2.6e-24 86.0 0.1 9.4e-24 84.2 0.0 2.0 2 0 0 2 2 2 1 Helicase C-terminal domain ResIII PF04851.10 gi|385776395|ref|YP_005648963.1| - 1.9e-08 34.3 0.9 2e-07 31.0 0.0 2.7 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|385776395|ref|YP_005648963.1| - 8.5e-06 25.3 0.0 0.012 15.1 0.0 3.4 4 0 0 4 4 4 2 DEAD/DEAH box helicase PhoH PF02562.11 gi|385776395|ref|YP_005648963.1| - 0.00023 20.4 1.1 0.011 14.9 0.0 3.2 2 1 1 3 3 3 1 PhoH-like protein SNF2_N PF00176.18 gi|385776395|ref|YP_005648963.1| - 0.037 12.8 0.1 0.08 11.7 0.1 1.5 1 1 0 1 1 1 0 SNF2 family N-terminal domain NAAA-beta PF15508.1 gi|385776395|ref|YP_005648963.1| - 0.12 12.7 1.9 0.24 11.7 0.1 2.4 3 1 0 3 3 3 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase CAGE1 PF15066.1 gi|385776395|ref|YP_005648963.1| - 0.36 9.2 7.0 0.54 8.6 4.8 1.2 1 0 0 1 1 1 0 Cancer-associated gene protein 1 family Rieske PF00355.21 gi|385776397|ref|YP_005648965.1| - 1.9e-15 56.1 0.0 2.3e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|385776397|ref|YP_005648965.1| - 3.5e-06 26.6 0.0 4.4e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain DHquinase_I PF01487.10 gi|385776398|ref|YP_005648966.1| - 4.1e-13 49.5 0.5 2.2e-11 43.8 0.3 2.1 2 0 0 2 2 2 2 Type I 3-dehydroquinase EPSP_synthase PF00275.15 gi|385776399|ref|YP_005648967.1| - 2.2e-65 220.7 0.0 2.6e-65 220.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GHMP_kinases_N PF00288.21 gi|385776400|ref|YP_005648968.1| - 2.3e-09 37.1 0.8 7.7e-09 35.4 0.3 2.1 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385776400|ref|YP_005648968.1| - 0.00056 20.0 0.1 0.0018 18.4 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Chorismate_synt PF01264.16 gi|385776401|ref|YP_005648969.1| - 2.3e-130 434.1 0.0 2.7e-130 433.9 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Shikimate_dh_N PF08501.6 gi|385776402|ref|YP_005648970.1| - 6.4e-24 83.8 0.1 2.2e-23 82.0 0.0 2.0 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|385776402|ref|YP_005648970.1| - 5.6e-12 45.9 0.1 9.9e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DUF1827 PF08860.5 gi|385776402|ref|YP_005648970.1| - 0.091 12.8 3.1 8.3 6.5 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1827) YebO PF13974.1 gi|385776402|ref|YP_005648970.1| - 0.12 12.1 0.4 0.31 10.8 0.3 1.7 1 0 0 1 1 1 0 YebO-like protein DHQ_synthase PF01761.15 gi|385776403|ref|YP_005648971.1| - 1.7e-92 309.0 0.0 2.1e-92 308.7 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH PF00465.14 gi|385776403|ref|YP_005648971.1| - 1.9e-10 39.9 0.1 9.9e-08 31.0 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|385776403|ref|YP_005648971.1| - 2.4e-08 33.6 0.0 3.5e-08 33.0 0.0 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.15 gi|385776404|ref|YP_005648972.1| - 2.7e-74 249.2 0.0 3.5e-74 248.8 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|385776404|ref|YP_005648972.1| - 7.2e-10 38.4 0.1 8.7e-05 21.7 0.0 2.9 2 1 1 3 3 3 2 NeuB family PDH PF02153.12 gi|385776405|ref|YP_005648973.1| - 1e-21 77.0 0.1 2.1e-21 75.9 0.0 1.5 2 0 0 2 2 2 1 Prephenate dehydrogenase CM_2 PF01817.16 gi|385776405|ref|YP_005648973.1| - 2.4e-20 72.4 0.2 4.2e-20 71.6 0.1 1.4 1 0 0 1 1 1 1 Chorismate mutase type II F420_oxidored PF03807.12 gi|385776405|ref|YP_005648973.1| - 1.2e-12 48.0 0.0 2.6e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|385776405|ref|YP_005648973.1| - 1.9e-06 27.9 0.5 9.6e-06 25.7 0.0 2.3 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|385776405|ref|YP_005648973.1| - 0.0019 18.0 0.0 0.0048 16.7 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|385776405|ref|YP_005648973.1| - 0.0045 16.3 0.0 0.0082 15.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|385776405|ref|YP_005648973.1| - 0.015 14.9 0.0 0.93 9.1 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Beta-Casp PF10996.3 gi|385776405|ref|YP_005648973.1| - 0.025 14.4 0.1 0.41 10.5 0.0 2.6 1 1 1 2 2 2 0 Beta-Casp domain NAD_Gly3P_dh_N PF01210.18 gi|385776405|ref|YP_005648973.1| - 0.14 11.8 0.4 1.9 8.2 0.1 2.8 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Transket_pyr PF02779.19 gi|385776406|ref|YP_005648974.1| - 1.3e-37 129.0 0.0 1.8e-37 128.5 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|385776406|ref|YP_005648974.1| - 2.1e-26 92.2 0.1 4.9e-26 91.0 0.0 1.6 2 0 0 2 2 2 1 Transketolase, C-terminal domain Imm49 PF15660.1 gi|385776406|ref|YP_005648974.1| - 0.07 13.1 0.1 4 7.5 0.0 2.4 2 0 0 2 2 2 0 Immunity protein 49 Transketolase_N PF00456.16 gi|385776407|ref|YP_005648975.1| - 2.5e-49 167.9 0.1 4.7e-49 166.9 0.1 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|385776407|ref|YP_005648975.1| - 1.4e-09 37.2 0.6 1.1e-05 24.5 0.5 2.5 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|385776407|ref|YP_005648975.1| - 7.3e-08 32.1 1.0 1.7e-06 27.6 0.6 2.4 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.15 gi|385776407|ref|YP_005648975.1| - 1e-07 31.0 0.0 1.5e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.5 gi|385776407|ref|YP_005648975.1| - 0.0034 16.0 0.1 0.0044 15.6 0.1 1.2 1 0 0 1 1 1 1 XFP N-terminal domain ThiF PF00899.16 gi|385776408|ref|YP_005648976.1| - 6.9e-40 136.0 0.4 2.7e-39 134.0 0.4 1.8 2 0 0 2 2 2 1 ThiF family MoeZ_MoeB PF05237.8 gi|385776408|ref|YP_005648976.1| - 1.5e-07 30.9 0.2 6.8e-07 28.7 0.1 2.1 2 0 0 2 2 2 1 MoeZ/MoeB domain TrkA_N PF02254.13 gi|385776408|ref|YP_005648976.1| - 0.0061 16.5 0.1 0.014 15.4 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|385776408|ref|YP_005648976.1| - 0.0092 15.1 0.0 0.02 14.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385776408|ref|YP_005648976.1| - 0.047 13.1 0.1 0.073 12.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|385776408|ref|YP_005648976.1| - 0.066 13.3 0.1 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|385776408|ref|YP_005648976.1| - 0.091 11.7 1.0 0.15 11.0 0.7 1.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|385776408|ref|YP_005648976.1| - 0.14 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|385776408|ref|YP_005648976.1| - 0.94 8.3 3.1 1.3 7.8 2.1 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase UPF0104 PF03706.8 gi|385776409|ref|YP_005648977.1| - 7e-11 41.9 14.9 1.3e-10 41.0 10.3 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) FA_desaturase PF00487.19 gi|385776409|ref|YP_005648977.1| - 1.5 8.1 9.8 0.18 11.2 2.6 2.1 1 1 1 2 2 2 0 Fatty acid desaturase Pcc1 PF09341.5 gi|385776411|ref|YP_005648979.1| - 0.0027 17.7 0.0 0.0031 17.5 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_L16 PF00252.13 gi|385776412|ref|YP_005648980.1| - 1.6e-30 105.6 0.1 1.8e-30 105.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.12 gi|385776413|ref|YP_005648981.1| - 5.2e-98 328.0 0.0 6.3e-98 327.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein B12-binding PF02310.14 gi|385776413|ref|YP_005648981.1| - 0.00049 19.9 0.0 0.98 9.3 0.0 3.6 3 2 1 4 4 4 2 B12 binding domain DUF506 PF04720.7 gi|385776413|ref|YP_005648981.1| - 0.03 13.9 0.0 6.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF506) UPF0180 PF03698.8 gi|385776413|ref|YP_005648981.1| - 0.067 13.0 0.0 3.4 7.5 0.0 2.7 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) ECR1_N PF14382.1 gi|385776414|ref|YP_005648982.1| - 8.5e-10 37.7 0.0 1.9e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|385776414|ref|YP_005648982.1| - 2.8e-06 27.3 0.6 2.8e-05 24.0 0.4 2.2 1 1 0 1 1 1 1 S1 RNA binding domain Mu-like_Com PF10122.4 gi|385776414|ref|YP_005648982.1| - 0.0032 16.4 1.4 0.0067 15.4 1.0 1.5 1 0 0 1 1 1 1 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.6 gi|385776414|ref|YP_005648982.1| - 0.0035 16.9 1.3 0.0064 16.1 0.9 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2318 PF10080.4 gi|385776414|ref|YP_005648982.1| - 0.023 14.4 0.4 0.039 13.7 0.2 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-FPG_IleRS PF06827.9 gi|385776414|ref|YP_005648982.1| - 0.029 14.0 0.7 0.32 10.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|385776414|ref|YP_005648982.1| - 0.042 13.5 1.0 0.093 12.4 0.7 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|385776414|ref|YP_005648982.1| - 0.057 12.6 0.3 0.11 11.7 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain IL4 PF00727.13 gi|385776414|ref|YP_005648982.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Interleukin 4 EXOSC1 PF10447.4 gi|385776414|ref|YP_005648982.1| - 0.079 12.9 0.8 0.33 10.9 0.2 2.2 2 1 0 2 2 2 0 Exosome component EXOSC1/CSL4 DZR PF12773.2 gi|385776414|ref|YP_005648982.1| - 0.083 12.7 0.6 0.14 12.0 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385776414|ref|YP_005648982.1| - 0.52 9.8 2.5 1.3 8.6 1.7 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385776414|ref|YP_005648982.1| - 1.5 8.5 5.8 6.1 6.6 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385776414|ref|YP_005648982.1| - 2 8.0 6.0 6 6.5 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_L_2 PF13656.1 gi|385776415|ref|YP_005648983.1| - 7e-21 73.4 0.0 8.1e-21 73.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|385776415|ref|YP_005648983.1| - 3.3e-11 42.1 0.0 4.1e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.13 gi|385776417|ref|YP_005648985.1| - 3.2e-22 77.8 13.9 3.1e-21 74.6 1.3 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|385776417|ref|YP_005648985.1| - 5.6e-10 38.7 4.9 5.6e-10 38.7 3.4 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|385776417|ref|YP_005648985.1| - 7.6e-08 32.1 6.8 0.00014 21.7 1.5 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|385776417|ref|YP_005648985.1| - 2.2e-07 30.5 9.7 0.00069 19.3 0.4 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385776417|ref|YP_005648985.1| - 0.00017 20.8 8.5 0.067 12.5 2.5 3.1 2 2 0 2 2 2 2 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|385776417|ref|YP_005648985.1| - 0.00031 20.7 6.5 1.4 9.0 0.0 4.1 3 1 1 4 4 4 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|385776417|ref|YP_005648985.1| - 0.00063 19.6 16.3 0.47 10.4 0.7 4.2 4 0 0 4 4 4 2 Zinc ribbon domain zf-TFIIB PF13453.1 gi|385776417|ref|YP_005648985.1| - 0.0008 18.5 1.4 0.0008 18.5 1.0 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger DZR PF12773.2 gi|385776417|ref|YP_005648985.1| - 0.00091 18.9 11.1 0.0067 16.2 1.1 2.8 2 1 0 2 2 2 1 Double zinc ribbon Desulfoferrod_N PF06397.7 gi|385776417|ref|YP_005648985.1| - 0.0018 17.5 2.3 1.2 8.6 0.1 2.5 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain Zn_ribbon_recom PF13408.1 gi|385776417|ref|YP_005648985.1| - 0.0019 18.4 1.4 0.0019 18.4 1.0 2.4 2 1 0 2 2 2 1 Recombinase zinc beta ribbon domain Rep_fac-A_C PF08646.5 gi|385776417|ref|YP_005648985.1| - 0.0065 16.1 1.9 0.0065 16.1 1.3 2.2 1 1 0 2 2 2 1 Replication factor-A C terminal domain zinc_ribbon_5 PF13719.1 gi|385776417|ref|YP_005648985.1| - 0.0067 15.9 14.7 0.14 11.7 0.2 4.4 4 1 0 4 4 4 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|385776417|ref|YP_005648985.1| - 0.0069 16.0 1.5 0.14 11.9 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.6 gi|385776417|ref|YP_005648985.1| - 0.0085 15.7 12.0 0.056 13.1 2.1 2.7 2 1 1 3 3 3 1 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|385776417|ref|YP_005648985.1| - 0.012 15.2 15.3 0.18 11.5 0.3 4.4 4 1 0 4 4 4 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385776417|ref|YP_005648985.1| - 0.016 14.3 14.1 1.4 8.1 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|385776417|ref|YP_005648985.1| - 0.017 14.4 4.9 0.34 10.2 0.1 2.2 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger FAM163 PF15069.1 gi|385776417|ref|YP_005648985.1| - 0.021 15.3 0.4 0.025 15.1 0.3 1.2 1 0 0 1 1 1 0 FAM163 family zf-Mss51 PF13824.1 gi|385776417|ref|YP_005648985.1| - 0.031 14.1 7.2 1 9.2 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 IBR PF01485.16 gi|385776417|ref|YP_005648985.1| - 0.054 13.3 3.7 0.054 13.3 2.6 2.9 2 1 0 2 2 2 0 IBR domain DUF2296 PF10058.4 gi|385776417|ref|YP_005648985.1| - 0.056 13.2 13.0 0.24 11.1 2.3 3.1 2 2 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-CHY PF05495.7 gi|385776417|ref|YP_005648985.1| - 0.059 13.5 9.0 1.1 9.4 0.3 2.4 1 1 0 2 2 2 0 CHY zinc finger C1_1 PF00130.17 gi|385776417|ref|YP_005648985.1| - 0.072 12.8 8.5 0.16 11.7 1.5 2.9 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1 PF03811.8 gi|385776417|ref|YP_005648985.1| - 0.17 11.3 12.8 0.89 9.1 2.0 3.3 3 1 0 3 3 3 0 InsA N-terminal domain zf-UBP PF02148.14 gi|385776417|ref|YP_005648985.1| - 0.21 11.7 2.5 4.7 7.3 0.2 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein C1_4 PF07975.7 gi|385776417|ref|YP_005648985.1| - 0.23 11.4 11.8 3.6 7.6 2.0 3.1 2 1 1 3 3 3 0 TFIIH C1-like domain Lar_restr_allev PF14354.1 gi|385776417|ref|YP_005648985.1| - 0.27 11.5 9.0 7.6 6.9 2.6 2.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar Terminase_GpA PF05876.7 gi|385776417|ref|YP_005648985.1| - 0.43 8.8 5.6 0.049 11.9 0.6 1.7 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) Opy2 PF09463.5 gi|385776417|ref|YP_005648985.1| - 0.44 10.6 7.0 2.6 8.2 0.0 3.5 4 0 0 4 4 4 0 Opy2 protein zf-C4_Topoisom PF01396.14 gi|385776417|ref|YP_005648985.1| - 0.46 10.0 15.8 0.25 10.8 3.0 3.5 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.1 gi|385776417|ref|YP_005648985.1| - 0.52 10.1 7.1 3.7 7.4 0.0 3.5 3 0 0 3 3 3 0 YhfH-like protein eIF-5_eIF-2B PF01873.12 gi|385776417|ref|YP_005648985.1| - 0.67 9.6 6.6 1.1 8.9 0.1 2.4 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Nudix_N_2 PF14803.1 gi|385776417|ref|YP_005648985.1| - 0.68 9.6 10.0 8.3 6.2 2.8 3.6 3 1 0 3 3 3 0 Nudix N-terminal zf-UBR PF02207.15 gi|385776417|ref|YP_005648985.1| - 0.75 9.5 6.2 3.3 7.5 0.5 3.0 3 0 0 3 3 3 0 Putative zinc finger in N-recognin (UBR box) zf-RING_4 PF14570.1 gi|385776417|ref|YP_005648985.1| - 0.81 9.3 8.9 5.2 6.7 1.1 3.2 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain PADR1 PF08063.7 gi|385776417|ref|YP_005648985.1| - 1.2 8.6 9.2 3 7.3 1.5 3.1 3 0 0 3 3 3 0 PADR1 (NUC008) domain Elf1 PF05129.8 gi|385776417|ref|YP_005648985.1| - 1.2 8.8 10.1 0.59 9.8 0.9 2.8 1 1 0 2 2 2 0 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.7 gi|385776417|ref|YP_005648985.1| - 1.3 8.9 9.5 11 5.8 0.1 3.7 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.6 gi|385776417|ref|YP_005648985.1| - 1.3 8.5 7.7 12 5.4 0.0 3.8 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|385776417|ref|YP_005648985.1| - 1.6 8.2 12.6 2.3 7.7 0.1 3.6 2 2 2 4 4 4 0 Transposase zinc-binding domain Ribosomal_L37ae PF01780.14 gi|385776417|ref|YP_005648985.1| - 2 8.3 7.5 0.62 9.9 0.2 2.6 2 1 0 2 2 2 0 Ribosomal L37ae protein family zinc_ribbon_2 PF13240.1 gi|385776417|ref|YP_005648985.1| - 2 8.0 22.7 4.8 6.7 0.4 4.2 3 1 0 3 3 3 0 zinc-ribbon domain DAN PF03045.10 gi|385776417|ref|YP_005648985.1| - 2.5 7.5 8.3 0.72 9.2 3.4 2.0 1 1 1 2 2 2 0 DAN domain HypA PF01155.14 gi|385776417|ref|YP_005648985.1| - 2.7 7.7 9.8 0.51 10.0 0.8 2.9 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Fer4_8 PF13183.1 gi|385776417|ref|YP_005648985.1| - 3.1 7.9 9.1 13 5.8 3.6 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-piccolo PF05715.8 gi|385776417|ref|YP_005648985.1| - 4.5 7.3 9.1 6.9 6.7 1.0 2.6 2 1 0 2 2 2 0 Piccolo Zn-finger zf-C2H2_4 PF13894.1 gi|385776417|ref|YP_005648985.1| - 5.1 7.6 9.5 43 4.7 0.3 3.8 4 0 0 4 4 4 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|385776417|ref|YP_005648985.1| - 5.4 6.8 10.3 0.54 10.0 0.8 2.8 2 1 0 2 2 2 0 zinc-ribbons GFA PF04828.9 gi|385776417|ref|YP_005648985.1| - 5.9 6.9 11.0 14 5.6 0.2 3.5 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.4 gi|385776417|ref|YP_005648985.1| - 6.3 6.5 14.3 19 5.0 0.1 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Ribosomal_S27e PF01667.12 gi|385776417|ref|YP_005648985.1| - 8.1 6.0 10.7 8.9 5.9 1.2 3.5 2 2 0 2 2 2 0 Ribosomal protein S27 Sugar_tr PF00083.19 gi|385776418|ref|YP_005648986.1| - 3.9e-42 144.3 22.6 4.9e-42 144.0 15.6 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|385776418|ref|YP_005648986.1| - 1.2e-27 96.6 54.5 8.5e-25 87.2 15.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1129 PF06570.6 gi|385776418|ref|YP_005648986.1| - 0.46 9.7 7.4 0.19 11.0 2.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) ABC_tran PF00005.22 gi|385776420|ref|YP_005648988.1| - 2.6e-38 131.4 0.1 3.5e-21 75.9 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|385776420|ref|YP_005648988.1| - 1.7e-13 50.3 9.5 8.9e-06 25.0 0.1 3.7 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|385776420|ref|YP_005648988.1| - 1.6e-12 48.0 10.9 5.9e-07 29.7 1.4 4.0 2 2 0 3 3 3 3 AAA domain RLI PF04068.10 gi|385776420|ref|YP_005648988.1| - 4.3e-12 45.3 1.6 1.2e-11 44.0 1.1 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|385776420|ref|YP_005648988.1| - 8.5e-08 31.4 5.7 8.5e-08 31.4 4.0 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain AAA PF00004.24 gi|385776420|ref|YP_005648988.1| - 2.2e-07 31.1 0.2 0.019 15.1 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|385776420|ref|YP_005648988.1| - 3.8e-06 26.8 4.8 0.0096 15.8 0.1 3.4 3 1 0 3 3 2 2 AAA domain AAA_17 PF13207.1 gi|385776420|ref|YP_005648988.1| - 1.2e-05 26.1 8.1 0.091 13.5 0.5 3.8 2 2 0 2 2 2 2 AAA domain Fer4_7 PF12838.2 gi|385776420|ref|YP_005648988.1| - 2.1e-05 24.8 20.0 0.00012 22.3 1.2 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385776420|ref|YP_005648988.1| - 2.2e-05 24.1 3.8 2.2e-05 24.1 2.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385776420|ref|YP_005648988.1| - 2.5e-05 23.9 3.7 2.5e-05 23.9 2.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain MobB PF03205.9 gi|385776420|ref|YP_005648988.1| - 4.2e-05 23.2 1.5 0.19 11.4 0.0 3.0 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B Fer4_10 PF13237.1 gi|385776420|ref|YP_005648988.1| - 0.0001 22.0 21.4 0.00052 19.7 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain NACHT PF05729.7 gi|385776420|ref|YP_005648988.1| - 0.00019 21.1 0.4 0.14 11.8 0.0 2.7 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|385776420|ref|YP_005648988.1| - 0.00019 21.5 4.9 0.52 10.4 0.0 3.3 2 2 0 2 2 2 2 AAA domain Fer4_21 PF14697.1 gi|385776420|ref|YP_005648988.1| - 0.00025 20.8 8.5 0.00053 19.7 5.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385776420|ref|YP_005648988.1| - 0.00046 20.8 2.3 0.0014 19.3 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_24 PF13479.1 gi|385776420|ref|YP_005648988.1| - 0.00046 19.8 1.2 0.51 9.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|385776420|ref|YP_005648988.1| - 0.00063 19.8 0.1 0.52 10.5 0.0 2.7 2 1 0 2 2 2 1 RNA helicase AAA_16 PF13191.1 gi|385776420|ref|YP_005648988.1| - 0.00083 19.3 0.2 0.17 11.8 0.0 2.6 3 0 0 3 3 2 1 AAA ATPase domain Fer4_9 PF13187.1 gi|385776420|ref|YP_005648988.1| - 0.00089 19.4 8.2 0.0029 17.8 5.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain DUF258 PF03193.11 gi|385776420|ref|YP_005648988.1| - 0.0009 18.4 0.3 1 8.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 Miro PF08477.8 gi|385776420|ref|YP_005648988.1| - 0.0023 18.4 1.5 1.3 9.5 0.0 3.6 4 0 0 4 4 3 1 Miro-like protein AAA_25 PF13481.1 gi|385776420|ref|YP_005648988.1| - 0.0027 17.1 0.8 0.31 10.4 0.0 3.4 3 1 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|385776420|ref|YP_005648988.1| - 0.0028 17.9 9.1 0.71 10.1 0.2 3.6 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|385776420|ref|YP_005648988.1| - 0.0062 16.8 13.2 0.29 11.4 3.2 2.6 1 1 1 2 2 2 2 AAA domain VirE PF05272.6 gi|385776420|ref|YP_005648988.1| - 0.0064 15.9 0.0 1 8.8 0.0 2.4 2 0 0 2 2 2 1 Virulence-associated protein E AAA_33 PF13671.1 gi|385776420|ref|YP_005648988.1| - 0.0065 16.3 0.4 2.4 7.9 0.0 3.5 2 2 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|385776420|ref|YP_005648988.1| - 0.0066 15.3 5.6 0.62 8.8 0.2 2.7 3 0 0 3 3 2 2 NB-ARC domain RuvB_N PF05496.7 gi|385776420|ref|YP_005648988.1| - 0.0071 15.4 0.3 0.93 8.4 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_29 PF13555.1 gi|385776420|ref|YP_005648988.1| - 0.0093 15.4 0.2 1.9 8.0 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain Fer4_3 PF12798.2 gi|385776420|ref|YP_005648988.1| - 0.02 15.4 4.8 0.02 15.4 3.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain UPF0079 PF02367.12 gi|385776420|ref|YP_005648988.1| - 0.025 14.1 0.5 0.41 10.2 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|385776420|ref|YP_005648988.1| - 0.026 13.4 0.4 0.8 8.5 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein Fer4_15 PF13459.1 gi|385776420|ref|YP_005648988.1| - 0.041 14.4 1.4 0.13 12.8 0.9 1.8 1 0 0 1 1 1 0 4Fe-4S single cluster domain SbcCD_C PF13558.1 gi|385776420|ref|YP_005648988.1| - 0.05 13.5 0.2 2.5 8.0 0.0 3.2 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit KAP_NTPase PF07693.9 gi|385776420|ref|YP_005648988.1| - 0.052 12.5 0.3 2.7 6.8 0.1 2.6 2 1 0 2 2 2 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|385776420|ref|YP_005648988.1| - 0.064 12.9 3.9 7.6 6.2 0.2 3.4 4 0 0 4 4 2 0 NTPase Fer4_8 PF13183.1 gi|385776420|ref|YP_005648988.1| - 0.16 12.0 5.4 0.064 13.3 1.1 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|385776420|ref|YP_005648988.1| - 0.21 11.4 2.1 0.37 10.7 1.4 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Arch_ATPase PF01637.13 gi|385776420|ref|YP_005648988.1| - 0.22 11.1 11.7 3.5 7.2 0.1 3.1 2 2 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|385776420|ref|YP_005648988.1| - 0.28 10.9 0.8 7.9 6.3 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain Fer4_4 PF12800.2 gi|385776420|ref|YP_005648988.1| - 0.43 11.0 13.2 0.061 13.6 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_13 PF13166.1 gi|385776420|ref|YP_005648988.1| - 0.45 8.9 6.4 4.8 5.5 0.0 3.6 3 1 0 4 4 4 0 AAA domain SRP54 PF00448.17 gi|385776420|ref|YP_005648988.1| - 0.64 9.4 3.1 19 4.6 0.0 2.8 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain DUF87 PF01935.12 gi|385776420|ref|YP_005648988.1| - 0.76 9.5 7.7 1.6 8.4 0.0 3.4 3 1 1 4 4 3 0 Domain of unknown function DUF87 Fer4_17 PF13534.1 gi|385776420|ref|YP_005648988.1| - 1.2 9.5 7.9 0.36 11.2 1.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_10 PF12846.2 gi|385776420|ref|YP_005648988.1| - 1.6 8.1 4.2 13 5.1 0.0 2.9 4 0 0 4 4 2 0 AAA-like domain Fer4_18 PF13746.1 gi|385776420|ref|YP_005648988.1| - 2.4 8.6 10.5 0.63 10.5 3.1 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385776420|ref|YP_005648988.1| - 3.1 8.2 6.7 0.29 11.5 1.1 1.9 2 0 0 2 2 1 0 4Fe-4S single cluster domain FBPase_3 PF01950.11 gi|385776421|ref|YP_005648989.1| - 8.7e-185 613.8 0.0 1e-184 613.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Ribosomal_S17e PF00833.13 gi|385776422|ref|YP_005648990.1| - 6.8e-15 54.9 3.7 7.8e-15 54.7 2.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF3538 PF12057.3 gi|385776422|ref|YP_005648990.1| - 0.076 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3538) DUF4407 PF14362.1 gi|385776422|ref|YP_005648990.1| - 0.12 11.3 2.0 0.14 11.0 1.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Urm1 PF09138.6 gi|385776423|ref|YP_005648991.1| - 4.2e-07 29.9 0.6 4.7e-07 29.8 0.4 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS PF02597.15 gi|385776423|ref|YP_005648991.1| - 0.00053 20.3 0.1 0.00066 20.0 0.1 1.3 1 1 0 1 1 1 1 ThiS family DUF87 PF01935.12 gi|385776425|ref|YP_005648993.1| - 9e-33 114.0 2.5 9e-33 114.0 1.7 2.1 2 1 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|385776425|ref|YP_005648993.1| - 5.6e-27 94.9 3.0 1.2e-26 93.8 2.1 1.5 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|385776425|ref|YP_005648993.1| - 6.5e-14 51.1 0.4 1.2e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|385776425|ref|YP_005648993.1| - 1e-09 38.1 0.1 5.5e-07 29.2 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|385776425|ref|YP_005648993.1| - 1.4e-07 30.5 0.1 2.4e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.11 gi|385776425|ref|YP_005648993.1| - 4.7e-07 29.2 0.9 0.00077 18.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_22 PF13401.1 gi|385776425|ref|YP_005648993.1| - 0.00039 20.5 0.2 0.98 9.5 0.0 2.8 3 0 0 3 3 2 2 AAA domain T4SS-DNA_transf PF02534.9 gi|385776425|ref|YP_005648993.1| - 0.00054 18.6 1.0 0.062 11.8 0.1 2.3 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer AAA_17 PF13207.1 gi|385776425|ref|YP_005648993.1| - 0.0008 20.2 0.1 0.0035 18.1 0.0 2.2 2 0 0 2 2 1 1 AAA domain TraG-D_C PF12696.2 gi|385776425|ref|YP_005648993.1| - 0.0027 17.5 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG DEAD PF00270.24 gi|385776425|ref|YP_005648993.1| - 0.004 16.6 0.0 0.42 10.0 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase IPT PF01745.11 gi|385776425|ref|YP_005648993.1| - 0.0082 15.3 0.0 0.02 14.0 0.0 1.6 1 0 0 1 1 1 1 Isopentenyl transferase KTI12 PF08433.5 gi|385776425|ref|YP_005648993.1| - 0.0094 15.1 0.1 0.14 11.3 0.0 2.3 2 0 0 2 2 2 1 Chromatin associated protein KTI12 CbiA PF01656.18 gi|385776425|ref|YP_005648993.1| - 0.01 15.2 0.0 0.024 14.0 0.0 1.7 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|385776425|ref|YP_005648993.1| - 0.016 15.5 3.4 0.054 13.8 0.6 2.8 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|385776425|ref|YP_005648993.1| - 0.022 14.3 0.0 0.6 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|385776425|ref|YP_005648993.1| - 0.03 13.7 0.0 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family MobB PF03205.9 gi|385776425|ref|YP_005648993.1| - 0.035 13.8 0.1 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B LpxK PF02606.9 gi|385776425|ref|YP_005648993.1| - 0.038 12.9 0.0 0.061 12.2 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ABC_tran PF00005.22 gi|385776425|ref|YP_005648993.1| - 0.072 13.3 0.2 0.92 9.8 0.0 2.7 2 1 1 3 3 3 0 ABC transporter APS_kinase PF01583.15 gi|385776425|ref|YP_005648993.1| - 0.073 12.7 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Cpn60_TCP1 PF00118.19 gi|385776426|ref|YP_005648994.1| - 5.4e-165 549.6 9.3 6.3e-165 549.4 6.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TF_Zn_Ribbon PF08271.7 gi|385776427|ref|YP_005648995.1| - 6.9e-12 44.4 3.0 1.2e-11 43.6 2.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.12 gi|385776427|ref|YP_005648995.1| - 0.003 17.0 0.4 0.0049 16.3 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|385776427|ref|YP_005648995.1| - 0.0044 17.2 0.2 0.0071 16.6 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.6 gi|385776427|ref|YP_005648995.1| - 0.012 15.2 0.4 0.024 14.2 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|385776427|ref|YP_005648995.1| - 0.016 14.4 5.7 0.041 13.0 3.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|385776427|ref|YP_005648995.1| - 0.038 13.4 2.8 0.038 13.4 1.9 2.3 3 0 0 3 3 3 0 A2L zinc ribbon domain Auto_anti-p27 PF06677.7 gi|385776427|ref|YP_005648995.1| - 0.061 13.0 0.5 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|385776427|ref|YP_005648995.1| - 0.067 13.0 0.2 0.1 12.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon RRN7 PF11781.3 gi|385776427|ref|YP_005648995.1| - 0.11 12.0 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 TFIIS_C PF01096.13 gi|385776427|ref|YP_005648995.1| - 0.23 11.1 1.8 0.8 9.3 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|385776427|ref|YP_005648995.1| - 0.23 11.3 3.3 2.4 8.0 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385776427|ref|YP_005648995.1| - 0.3 10.6 3.4 2.7 7.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|385776427|ref|YP_005648995.1| - 0.55 10.3 4.6 1.4 9.0 3.2 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase tRNA_int_endo PF01974.12 gi|385776428|ref|YP_005648996.1| - 1.9e-09 37.2 0.6 3.3e-09 36.4 0.2 1.5 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain Sen15 PF09631.5 gi|385776428|ref|YP_005648996.1| - 4.8e-05 23.5 1.0 8.3e-05 22.7 0.4 1.5 1 1 1 2 2 2 1 Sen15 protein DUF3997 PF13162.1 gi|385776428|ref|YP_005648996.1| - 0.053 13.3 1.7 0.086 12.6 0.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3997) tRNA-synt_His PF13393.1 gi|385776429|ref|YP_005648997.1| - 8.3e-69 232.0 0.0 1e-68 231.7 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|385776429|ref|YP_005648997.1| - 1.5e-24 86.5 0.1 2.7e-24 85.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|385776429|ref|YP_005648997.1| - 3.4e-11 42.9 1.3 8.5e-11 41.6 0.2 2.2 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|385776429|ref|YP_005648997.1| - 3.2e-08 33.0 0.0 1.2e-07 31.2 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Proteasome PF00227.21 gi|385776430|ref|YP_005648998.1| - 8.7e-51 171.9 0.2 1e-50 171.7 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit TRF PF08558.5 gi|385776431|ref|YP_005648999.1| - 0.00035 19.9 0.1 0.00059 19.2 0.0 1.3 1 1 0 1 1 1 1 Telomere repeat binding factor (TRF) 2-ph_phosp PF04029.9 gi|385776431|ref|YP_005648999.1| - 0.00067 18.6 0.1 0.00098 18.1 0.0 1.3 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase Flagellin_IN PF07196.8 gi|385776431|ref|YP_005648999.1| - 0.1 12.5 0.4 0.2 11.6 0.3 1.5 1 0 0 1 1 1 0 Flagellin hook IN motif Lsm_C PF14894.1 gi|385776432|ref|YP_005649000.1| - 9.4e-31 105.1 0.2 1.5e-30 104.4 0.1 1.3 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.17 gi|385776432|ref|YP_005649000.1| - 1.5e-05 24.4 0.6 3.8e-05 23.1 0.4 1.7 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|385776432|ref|YP_005649000.1| - 0.0015 18.4 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain TGT PF01702.13 gi|385776433|ref|YP_005649001.1| - 4e-45 153.9 0.0 5.9e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PAC2 PF09754.4 gi|385776434|ref|YP_005649002.1| - 1e-39 136.6 0.0 1.3e-39 136.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PUA PF01472.15 gi|385776435|ref|YP_005649003.1| - 7.2e-20 70.4 2.2 1e-19 70.0 1.5 1.2 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|385776435|ref|YP_005649003.1| - 8.4e-08 31.9 0.0 2e-07 30.7 0.0 1.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Antitoxin-MazE PF04014.13 gi|385776435|ref|YP_005649003.1| - 0.016 14.8 2.0 0.22 11.2 1.4 2.4 1 1 0 1 1 1 0 Antidote-toxin recognition MazE ART PF01129.13 gi|385776435|ref|YP_005649003.1| - 0.14 11.2 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 NAD:arginine ADP-ribosyltransferase AAA PF00004.24 gi|385776436|ref|YP_005649004.1| - 9.5e-43 145.5 0.2 2.1e-42 144.4 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|385776436|ref|YP_005649004.1| - 6.8e-07 29.3 0.0 2e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|385776436|ref|YP_005649004.1| - 2e-06 27.5 0.1 1.1e-05 25.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|385776436|ref|YP_005649004.1| - 2.6e-06 27.5 0.3 9e-05 22.6 0.1 2.8 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|385776436|ref|YP_005649004.1| - 7.5e-06 25.1 0.0 1.8e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|385776436|ref|YP_005649004.1| - 8.8e-06 25.8 0.0 5.2e-05 23.3 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|385776436|ref|YP_005649004.1| - 4.1e-05 24.3 0.4 0.00017 22.4 0.1 2.3 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|385776436|ref|YP_005649004.1| - 4.5e-05 23.3 0.0 0.00031 20.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|385776436|ref|YP_005649004.1| - 0.00048 20.1 0.0 0.00095 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|385776436|ref|YP_005649004.1| - 0.00058 18.8 0.0 0.0013 17.7 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|385776436|ref|YP_005649004.1| - 0.00062 18.9 0.0 0.0014 17.8 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.16 gi|385776436|ref|YP_005649004.1| - 0.00079 18.6 0.0 0.002 17.2 0.0 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|385776436|ref|YP_005649004.1| - 0.00089 18.9 0.0 0.002 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|385776436|ref|YP_005649004.1| - 0.001 18.5 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|385776436|ref|YP_005649004.1| - 0.0019 18.1 0.0 0.0037 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|385776436|ref|YP_005649004.1| - 0.0024 18.0 0.0 0.0059 16.7 0.0 1.7 1 0 0 1 1 1 1 RNA helicase TIP49 PF06068.8 gi|385776436|ref|YP_005649004.1| - 0.0025 16.6 0.0 0.0051 15.5 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_19 PF13245.1 gi|385776436|ref|YP_005649004.1| - 0.0025 17.5 0.1 0.0058 16.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|385776436|ref|YP_005649004.1| - 0.0052 16.8 0.0 0.019 14.9 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|385776436|ref|YP_005649004.1| - 0.0053 16.4 0.3 0.024 14.3 0.0 2.2 2 1 0 2 2 1 1 Archaeal ATPase AAA_25 PF13481.1 gi|385776436|ref|YP_005649004.1| - 0.0072 15.7 0.7 0.04 13.3 0.1 2.2 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|385776436|ref|YP_005649004.1| - 0.0077 15.7 0.1 0.051 13.0 0.1 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|385776436|ref|YP_005649004.1| - 0.0086 15.7 0.1 0.063 12.9 0.0 2.2 2 0 0 2 2 2 1 NACHT domain Bac_DnaA PF00308.13 gi|385776436|ref|YP_005649004.1| - 0.0096 15.5 0.0 0.041 13.5 0.0 2.0 3 0 0 3 3 1 1 Bacterial dnaA protein AAA_18 PF13238.1 gi|385776436|ref|YP_005649004.1| - 0.019 15.2 0.0 0.051 13.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|385776436|ref|YP_005649004.1| - 0.03 13.1 0.0 0.088 11.6 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Parvo_NS1 PF01057.12 gi|385776436|ref|YP_005649004.1| - 0.032 13.1 0.0 0.063 12.1 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF16 PF01519.11 gi|385776436|ref|YP_005649004.1| - 0.042 14.0 2.3 1 9.6 0.1 2.8 3 0 0 3 3 2 0 Protein of unknown function DUF16 PhoH PF02562.11 gi|385776436|ref|YP_005649004.1| - 0.043 13.0 0.1 0.14 11.3 0.0 1.8 1 0 0 1 1 1 0 PhoH-like protein cobW PF02492.14 gi|385776436|ref|YP_005649004.1| - 0.082 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|385776436|ref|YP_005649004.1| - 0.097 12.9 0.3 0.71 10.1 0.0 2.5 2 1 1 3 3 2 0 ABC transporter KaiC PF06745.8 gi|385776436|ref|YP_005649004.1| - 0.12 11.4 5.9 0.29 10.2 0.0 3.3 3 1 1 4 4 4 0 KaiC TMF_TATA_bd PF12325.3 gi|385776436|ref|YP_005649004.1| - 0.13 11.9 8.0 0.64 9.7 0.2 3.2 3 1 0 3 3 3 0 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.16 gi|385776436|ref|YP_005649004.1| - 0.15 12.0 5.0 0.24 11.3 1.8 2.3 2 0 0 2 2 2 0 bZIP transcription factor NTPase_1 PF03266.10 gi|385776436|ref|YP_005649004.1| - 0.44 10.2 5.3 8.7 6.0 0.1 3.6 2 2 2 4 4 4 0 NTPase TSC22 PF01166.13 gi|385776436|ref|YP_005649004.1| - 1.4 8.9 6.2 2.5 8.1 1.1 2.8 2 0 0 2 2 2 0 TSC-22/dip/bun family FlaC_arch PF05377.6 gi|385776436|ref|YP_005649004.1| - 2.5 8.0 8.8 0.64 9.9 0.9 2.8 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) AAA_23 PF13476.1 gi|385776436|ref|YP_005649004.1| - 2.9 8.1 0.0 2.9 8.1 0.0 3.5 3 2 1 4 4 4 0 AAA domain HTH_3 PF01381.17 gi|385776437|ref|YP_005649005.1| - 5.6e-12 45.3 1.7 8.9e-12 44.6 1.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|385776437|ref|YP_005649005.1| - 2e-10 40.5 0.5 3.7e-10 39.6 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|385776437|ref|YP_005649005.1| - 2.6e-08 33.9 0.0 4.3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|385776437|ref|YP_005649005.1| - 5.1e-07 29.2 0.2 9.9e-07 28.3 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|385776437|ref|YP_005649005.1| - 7e-05 22.5 0.8 0.00011 21.9 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Latrotoxin_C PF15658.1 gi|385776437|ref|YP_005649005.1| - 0.0013 18.5 1.5 0.0017 18.1 1.1 1.2 1 0 0 1 1 1 1 Latrotoxin C-terminal domain HTH_23 PF13384.1 gi|385776437|ref|YP_005649005.1| - 0.0037 16.8 0.0 0.0079 15.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain GvpH PF05455.6 gi|385776437|ref|YP_005649005.1| - 0.0049 16.5 0.0 0.0059 16.2 0.0 1.1 1 0 0 1 1 1 1 GvpH Death PF00531.17 gi|385776437|ref|YP_005649005.1| - 0.0084 15.8 0.1 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 Death domain HTH_11 PF08279.7 gi|385776437|ref|YP_005649005.1| - 0.016 14.8 0.1 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF1041 PF06292.12 gi|385776437|ref|YP_005649005.1| - 0.021 14.9 0.3 0.036 14.2 0.2 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1041) Arc_trans_TRASH PF08394.5 gi|385776437|ref|YP_005649005.1| - 0.033 14.3 1.4 0.069 13.3 1.0 1.6 1 0 0 1 1 1 0 Archaeal TRASH domain RPA_C PF08784.6 gi|385776437|ref|YP_005649005.1| - 0.037 14.4 0.1 0.057 13.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_26 PF13443.1 gi|385776437|ref|YP_005649005.1| - 0.074 13.2 0.1 0.16 12.1 0.1 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DAGK_acc PF00609.14 gi|385776437|ref|YP_005649005.1| - 0.091 12.8 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase accessory domain HTH_1 PF00126.22 gi|385776437|ref|YP_005649005.1| - 0.12 12.0 0.2 13 5.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4428 PF14471.1 gi|385776437|ref|YP_005649005.1| - 0.13 12.0 1.4 0.41 10.4 1.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) MitMem_reg PF13012.1 gi|385776437|ref|YP_005649005.1| - 0.18 11.9 1.6 0.16 12.0 0.3 1.5 2 0 0 2 2 2 0 Maintenance of mitochondrial structure and function Relaxase PF03432.9 gi|385776437|ref|YP_005649005.1| - 0.27 10.5 3.1 0.34 10.2 2.2 1.1 1 0 0 1 1 1 0 Relaxase/Mobilisation nuclease domain Sof1 PF04158.9 gi|385776437|ref|YP_005649005.1| - 0.32 11.0 3.4 0.98 9.4 0.2 2.1 2 0 0 2 2 2 0 Sof1-like domain MMR_HSR1 PF01926.18 gi|385776438|ref|YP_005649006.1| - 4.1e-19 68.6 0.1 7.8e-19 67.7 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|385776438|ref|YP_005649006.1| - 3.2e-12 45.9 0.3 7.8e-12 44.7 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|385776438|ref|YP_005649006.1| - 4.5e-11 42.5 0.0 1e-08 34.8 0.0 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|385776438|ref|YP_005649006.1| - 4.5e-07 29.2 0.2 4.5e-07 29.2 0.2 1.9 1 1 1 2 2 2 1 Signal recognition particle receptor beta subunit Arf PF00025.16 gi|385776438|ref|YP_005649006.1| - 4.9e-05 22.6 0.5 0.00016 21.0 0.1 2.0 2 1 0 2 2 2 1 ADP-ribosylation factor family Miro PF08477.8 gi|385776438|ref|YP_005649006.1| - 0.00057 20.3 0.1 0.002 18.6 0.1 2.0 1 1 0 1 1 1 1 Miro-like protein EcKinase PF02958.15 gi|385776438|ref|YP_005649006.1| - 0.0022 17.1 0.1 0.0034 16.5 0.1 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase AAA_23 PF13476.1 gi|385776438|ref|YP_005649006.1| - 0.0023 18.2 4.0 0.0023 18.2 2.8 3.0 1 1 1 2 2 2 1 AAA domain Dynamin_N PF00350.18 gi|385776438|ref|YP_005649006.1| - 0.014 15.2 0.9 0.85 9.4 0.3 2.7 1 1 1 2 2 2 0 Dynamin family MobB PF03205.9 gi|385776438|ref|YP_005649006.1| - 0.019 14.6 0.2 0.047 13.3 0.2 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|385776438|ref|YP_005649006.1| - 0.026 14.8 0.5 0.12 12.7 0.2 2.1 1 1 1 2 2 2 0 ABC transporter Trm56 PF01994.11 gi|385776439|ref|YP_005649007.1| - 2.1e-48 163.0 0.2 2.6e-48 162.7 0.1 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|385776439|ref|YP_005649007.1| - 0.0054 16.5 0.0 0.0075 16.1 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family TFIIE_alpha PF02002.12 gi|385776440|ref|YP_005649008.1| - 4.4e-23 80.7 4.0 4.4e-23 80.7 2.8 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|385776440|ref|YP_005649008.1| - 5.6e-05 22.8 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385776440|ref|YP_005649008.1| - 0.00011 21.8 0.0 0.00023 20.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.6 gi|385776440|ref|YP_005649008.1| - 0.00063 19.5 0.2 0.0055 16.5 0.0 2.3 3 0 0 3 3 3 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.1 gi|385776440|ref|YP_005649008.1| - 0.0011 18.3 0.1 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_rep_org_N PF09681.5 gi|385776440|ref|YP_005649008.1| - 0.0016 18.0 0.2 0.0039 16.7 0.0 1.8 2 0 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) Fe_dep_repress PF01325.14 gi|385776440|ref|YP_005649008.1| - 0.0021 17.9 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.5 gi|385776440|ref|YP_005649008.1| - 0.0025 17.4 1.8 0.0033 17.1 0.1 2.0 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain GntR PF00392.16 gi|385776440|ref|YP_005649008.1| - 0.003 16.9 0.2 0.0068 15.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|385776440|ref|YP_005649008.1| - 0.0053 16.3 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r3 PF04539.11 gi|385776440|ref|YP_005649008.1| - 0.0081 16.0 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 Phage_terminase PF10668.4 gi|385776440|ref|YP_005649008.1| - 0.0085 15.8 0.1 0.021 14.5 0.0 1.7 1 0 0 1 1 1 1 Phage terminase small subunit HTH_5 PF01022.15 gi|385776440|ref|YP_005649008.1| - 0.0094 15.6 0.0 0.022 14.4 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Zn_Tnp_IS1595 PF12760.2 gi|385776440|ref|YP_005649008.1| - 0.021 14.6 0.1 0.051 13.3 0.0 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rrf2 PF02082.15 gi|385776440|ref|YP_005649008.1| - 0.028 14.5 0.0 0.047 13.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|385776440|ref|YP_005649008.1| - 0.028 13.9 0.1 0.083 12.4 0.0 1.8 2 0 0 2 2 2 0 LexA DNA binding domain HTH_36 PF13730.1 gi|385776440|ref|YP_005649008.1| - 0.03 14.4 0.1 0.096 12.8 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|385776440|ref|YP_005649008.1| - 0.031 13.9 0.1 0.031 13.9 0.1 1.8 2 0 0 2 2 2 0 HTH domain MarR_2 PF12802.2 gi|385776440|ref|YP_005649008.1| - 0.036 13.7 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.7 gi|385776440|ref|YP_005649008.1| - 0.038 13.5 1.5 0.067 12.7 0.1 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain RPA_C PF08784.6 gi|385776440|ref|YP_005649008.1| - 0.042 14.2 0.0 0.078 13.3 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_34 PF13601.1 gi|385776440|ref|YP_005649008.1| - 0.047 13.7 0.8 0.089 12.8 0.1 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|385776440|ref|YP_005649008.1| - 0.049 13.4 0.1 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon MarR PF01047.17 gi|385776440|ref|YP_005649008.1| - 0.051 13.2 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.1 gi|385776440|ref|YP_005649008.1| - 0.054 13.0 1.6 0.072 12.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_45 PF14947.1 gi|385776440|ref|YP_005649008.1| - 0.057 13.2 0.8 0.13 12.1 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2296 PF10058.4 gi|385776440|ref|YP_005649008.1| - 0.059 13.1 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) EAP30 PF04157.11 gi|385776440|ref|YP_005649008.1| - 0.06 12.4 0.1 0.16 11.1 0.0 1.6 2 0 0 2 2 2 0 EAP30/Vps36 family TSKS PF15358.1 gi|385776440|ref|YP_005649008.1| - 0.068 11.3 0.0 0.1 10.7 0.0 1.2 1 0 0 1 1 1 0 Testis-specific serine kinase substrate TF_Zn_Ribbon PF08271.7 gi|385776440|ref|YP_005649008.1| - 0.12 11.7 0.8 0.43 9.9 0.3 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding HR1 PF02185.11 gi|385776440|ref|YP_005649008.1| - 9.6 6.0 11.4 2.1 8.1 0.3 2.7 3 0 0 3 3 3 0 Hr1 repeat DNA_methylase PF00145.12 gi|385776441|ref|YP_005649009.1| - 3.7e-56 190.6 0.0 1.4e-53 182.2 0.0 2.1 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|385776441|ref|YP_005649009.1| - 0.0017 17.9 0.0 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|385776441|ref|YP_005649009.1| - 0.0018 18.2 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385776441|ref|YP_005649009.1| - 0.16 11.0 0.1 0.28 10.2 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2122 PF09895.4 gi|385776442|ref|YP_005649010.1| - 2.1e-33 114.7 0.0 2.9e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) SWIM PF04434.12 gi|385776443|ref|YP_005649011.1| - 5.7e-07 28.8 0.3 9.6e-07 28.1 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF843 PF05814.6 gi|385776444|ref|YP_005649012.1| - 0.0096 15.7 0.7 0.0099 15.6 0.5 1.1 1 0 0 1 1 1 1 Baculovirus protein of unknown function (DUF843) ATP-synt_8 PF00895.15 gi|385776444|ref|YP_005649012.1| - 0.015 15.4 0.8 0.017 15.3 0.5 1.1 1 0 0 1 1 1 0 ATP synthase protein 8 DUF2149 PF09919.4 gi|385776444|ref|YP_005649012.1| - 0.028 14.5 0.3 0.04 13.9 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) Baculo_11_kDa PF06143.6 gi|385776444|ref|YP_005649012.1| - 0.037 13.3 0.2 0.043 13.1 0.1 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family PDR_CDR PF06422.7 gi|385776444|ref|YP_005649012.1| - 0.15 11.7 0.1 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 CDR ABC transporter PspC PF04024.7 gi|385776444|ref|YP_005649012.1| - 0.2 11.1 1.0 0.25 10.8 0.7 1.2 1 0 0 1 1 1 0 PspC domain Elf1 PF05129.8 gi|385776445|ref|YP_005649013.1| - 1.8e-22 78.8 0.2 2.3e-22 78.4 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|385776445|ref|YP_005649013.1| - 0.0022 18.2 0.2 0.0038 17.4 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|385776445|ref|YP_005649013.1| - 0.0029 17.5 0.3 0.0048 16.8 0.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|385776445|ref|YP_005649013.1| - 0.0083 15.3 0.5 0.54 9.5 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385776445|ref|YP_005649013.1| - 0.011 15.4 0.5 0.017 14.7 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385776445|ref|YP_005649013.1| - 0.033 13.5 2.6 0.033 13.5 1.8 1.9 2 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|385776445|ref|YP_005649013.1| - 0.041 13.7 0.4 0.27 11.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin CpXC PF14353.1 gi|385776445|ref|YP_005649013.1| - 0.044 13.7 1.8 1.1 9.2 0.0 2.1 1 1 1 2 2 2 0 CpXC protein DUF2387 PF09526.5 gi|385776445|ref|YP_005649013.1| - 0.044 13.7 1.7 0.11 12.4 1.2 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|385776445|ref|YP_005649013.1| - 0.046 13.3 3.8 0.22 11.1 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|385776445|ref|YP_005649013.1| - 0.05 13.2 0.6 0.22 11.1 0.1 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_4 PF13717.1 gi|385776445|ref|YP_005649013.1| - 0.052 13.2 3.9 0.23 11.1 2.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385776445|ref|YP_005649013.1| - 0.056 13.2 1.1 0.12 12.1 0.7 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Nop10p PF04135.7 gi|385776445|ref|YP_005649013.1| - 0.064 12.9 0.4 4.8 6.9 0.3 3.0 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zf-CSL PF05207.8 gi|385776445|ref|YP_005649013.1| - 0.067 12.7 0.8 0.18 11.3 0.6 1.7 1 0 0 1 1 1 0 CSL zinc finger zf-ISL3 PF14690.1 gi|385776445|ref|YP_005649013.1| - 0.089 12.8 0.2 0.76 9.8 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L32p PF01783.18 gi|385776445|ref|YP_005649013.1| - 0.14 12.4 2.2 1.9 8.7 1.5 2.1 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-Mss51 PF13824.1 gi|385776445|ref|YP_005649013.1| - 1.2 9.0 3.1 1.8 8.4 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_6 PF13912.1 gi|385776445|ref|YP_005649013.1| - 1.5 8.8 3.4 2.4 8.1 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|385776445|ref|YP_005649013.1| - 7 6.2 6.6 95 2.6 4.4 2.5 1 1 0 1 1 1 0 zinc-ribbon domain PcrB PF01884.12 gi|385776446|ref|YP_005649014.1| - 5.2e-59 199.2 1.5 6e-59 199.0 1.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|385776446|ref|YP_005649014.1| - 1.7e-06 27.5 0.1 2.6e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DeoC PF01791.4 gi|385776446|ref|YP_005649014.1| - 0.00092 18.5 0.1 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|385776446|ref|YP_005649014.1| - 0.0012 17.8 0.5 0.0017 17.3 0.3 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|385776446|ref|YP_005649014.1| - 0.016 14.2 0.3 0.051 12.6 0.3 1.8 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|385776446|ref|YP_005649014.1| - 0.03 12.8 0.3 0.049 12.1 0.2 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain NanE PF04131.9 gi|385776446|ref|YP_005649014.1| - 0.044 12.7 0.0 0.27 10.1 0.0 2.0 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.7 gi|385776446|ref|YP_005649014.1| - 0.045 12.7 0.1 0.095 11.7 0.0 1.5 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|385776446|ref|YP_005649014.1| - 0.047 12.7 0.0 0.081 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|385776446|ref|YP_005649014.1| - 0.059 12.1 0.0 0.083 11.7 0.0 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Sec61_beta PF03911.11 gi|385776447|ref|YP_005649015.1| - 6.5e-17 61.0 0.4 7.3e-17 60.8 0.3 1.1 1 0 0 1 1 1 1 Sec61beta family AsnC_trans_reg PF01037.16 gi|385776448|ref|YP_005649016.1| - 3.4e-19 68.3 0.3 3.8e-19 68.1 0.2 1.0 1 0 0 1 1 1 1 AsnC family PRESAN PF09687.5 gi|385776448|ref|YP_005649016.1| - 0.012 15.6 0.2 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Plasmodium RESA N-terminal ACT_4 PF13291.1 gi|385776448|ref|YP_005649016.1| - 0.046 14.0 0.4 0.61 10.4 0.1 2.0 1 1 1 2 2 2 0 ACT domain ICE2 PF08426.5 gi|385776448|ref|YP_005649016.1| - 0.055 12.0 0.1 0.058 12.0 0.1 1.0 1 0 0 1 1 1 0 ICE2 Tox-REase-3 PF15647.1 gi|385776448|ref|YP_005649016.1| - 0.067 13.0 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 3 GYD PF08734.6 gi|385776448|ref|YP_005649016.1| - 0.099 12.3 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 GYD domain DUF4041 PF13250.1 gi|385776448|ref|YP_005649016.1| - 0.16 11.5 1.4 0.7 9.5 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) DUF1743 PF08489.6 gi|385776449|ref|YP_005649017.1| - 4.2e-39 132.9 0.0 9.7e-39 131.7 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|385776449|ref|YP_005649017.1| - 0.011 15.4 1.1 0.021 14.4 0.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|385776449|ref|YP_005649017.1| - 0.03 14.1 1.2 0.055 13.2 0.9 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF3477 PF11963.3 gi|385776449|ref|YP_005649017.1| - 0.054 12.4 0.0 0.08 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3477) zf-FPG_IleRS PF06827.9 gi|385776449|ref|YP_005649017.1| - 2.7 7.7 4.6 9.8 5.9 3.2 1.9 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Cdc6_C PF09079.6 gi|385776450|ref|YP_005649018.1| - 1.4e-25 88.7 1.3 1.3e-24 85.7 0.1 2.8 2 1 1 3 3 3 1 CDC6, C terminal AAA_22 PF13401.1 gi|385776450|ref|YP_005649018.1| - 7.2e-13 48.8 0.0 1.7e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385776450|ref|YP_005649018.1| - 1.6e-11 44.5 0.1 6.6e-10 39.2 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|385776450|ref|YP_005649018.1| - 6e-10 39.4 0.0 1.3e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|385776450|ref|YP_005649018.1| - 1.6e-06 28.0 5.4 5.1e-06 26.3 2.3 2.5 2 1 0 2 2 2 1 Archaeal ATPase DUF815 PF05673.8 gi|385776450|ref|YP_005649018.1| - 7.5e-06 25.0 0.0 4.1e-05 22.6 0.0 2.1 2 1 1 3 3 3 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|385776450|ref|YP_005649018.1| - 2.7e-05 23.1 0.0 4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.1 gi|385776450|ref|YP_005649018.1| - 0.0045 17.8 3.0 0.025 15.3 2.2 2.4 1 1 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|385776450|ref|YP_005649018.1| - 0.0048 16.7 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|385776450|ref|YP_005649018.1| - 0.0085 16.2 0.2 0.91 9.7 0.0 2.3 2 0 0 2 2 2 1 RNA helicase PIF1 PF05970.9 gi|385776450|ref|YP_005649018.1| - 0.009 14.9 0.1 0.035 13.0 0.0 1.8 2 0 0 2 2 2 1 PIF1-like helicase AAA_32 PF13654.1 gi|385776450|ref|YP_005649018.1| - 0.012 14.3 0.0 0.025 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385776450|ref|YP_005649018.1| - 0.012 15.4 0.2 0.025 14.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|385776450|ref|YP_005649018.1| - 0.015 14.3 2.3 2.1 7.2 0.0 2.6 2 1 1 3 3 3 0 KAP family P-loop domain Bac_DnaA PF00308.13 gi|385776450|ref|YP_005649018.1| - 0.016 14.9 0.1 0.41 10.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein DEAD PF00270.24 gi|385776450|ref|YP_005649018.1| - 0.024 14.1 0.4 5.6 6.4 0.1 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.7 gi|385776450|ref|YP_005649018.1| - 0.026 14.1 0.0 0.059 13.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.4 gi|385776450|ref|YP_005649018.1| - 0.03 13.2 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SMC_N PF02463.14 gi|385776450|ref|YP_005649018.1| - 0.034 13.3 0.2 3.1 6.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Pox_A32 PF04665.7 gi|385776450|ref|YP_005649018.1| - 0.042 13.1 2.5 0.08 12.2 1.8 1.5 1 1 0 1 1 1 0 Poxvirus A32 protein AAA_5 PF07728.9 gi|385776450|ref|YP_005649018.1| - 0.058 13.1 0.1 0.18 11.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|385776450|ref|YP_005649018.1| - 0.063 12.1 0.0 0.12 11.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RFX_DNA_binding PF02257.10 gi|385776450|ref|YP_005649018.1| - 0.072 13.2 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 RFX DNA-binding domain AAA_18 PF13238.1 gi|385776450|ref|YP_005649018.1| - 0.12 12.7 0.7 0.57 10.4 0.1 2.4 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|385776450|ref|YP_005649018.1| - 0.15 10.6 0.1 0.81 8.2 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain SRP54_N PF02881.14 gi|385776450|ref|YP_005649018.1| - 0.23 11.5 2.1 1.2 9.2 0.0 2.9 3 0 0 3 3 2 0 SRP54-type protein, helical bundle domain DUF99 PF01949.11 gi|385776451|ref|YP_005649019.1| - 8.1e-28 96.7 0.0 1.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF99 CTP_transf_2 PF01467.21 gi|385776452|ref|YP_005649020.1| - 1.7e-07 31.4 0.0 2.3e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase SAM_adeno_trans PF01887.11 gi|385776453|ref|YP_005649021.1| - 5e-86 287.9 0.1 5.6e-86 287.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Ribosomal_L21e PF01157.13 gi|385776453|ref|YP_005649021.1| - 0.026 14.2 0.0 0.069 12.9 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L21e DUF3189 PF11385.3 gi|385776453|ref|YP_005649021.1| - 0.079 12.5 0.1 3 7.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3189) CYTH PF01928.16 gi|385776454|ref|YP_005649022.1| - 3.9e-30 104.8 2.6 4.6e-30 104.6 1.8 1.1 1 0 0 1 1 1 1 CYTH domain Glyoxalase_4 PF13669.1 gi|385776454|ref|YP_005649022.1| - 0.025 14.6 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Nol1_Nop2_Fmu PF01189.12 gi|385776455|ref|YP_005649023.1| - 4.1e-53 180.5 0.0 5.5e-53 180.1 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_26 PF13659.1 gi|385776455|ref|YP_005649023.1| - 4.4e-07 29.9 0.0 6.7e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385776455|ref|YP_005649023.1| - 1e-06 28.3 0.0 2.2e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|385776455|ref|YP_005649023.1| - 5.5e-05 23.2 0.0 8.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|385776455|ref|YP_005649023.1| - 0.00031 20.3 0.0 0.00049 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|385776455|ref|YP_005649023.1| - 0.0011 19.5 0.0 0.0018 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|385776455|ref|YP_005649023.1| - 0.0011 18.0 0.0 0.0019 17.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|385776455|ref|YP_005649023.1| - 0.0057 16.2 0.0 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|385776455|ref|YP_005649023.1| - 0.0079 15.6 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.12 gi|385776455|ref|YP_005649023.1| - 0.013 14.6 0.0 0.039 13.0 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase Fibrillarin PF01269.12 gi|385776455|ref|YP_005649023.1| - 0.021 13.7 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin UPF0113 PF03657.8 gi|385776456|ref|YP_005649024.1| - 0.026 14.1 0.8 0.053 13.1 0.6 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0113) Rad51 PF08423.6 gi|385776457|ref|YP_005649025.1| - 3e-92 308.1 0.0 3.7e-92 307.8 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|385776457|ref|YP_005649025.1| - 1.8e-16 60.1 0.1 2.3e-16 59.7 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|385776457|ref|YP_005649025.1| - 3.4e-13 49.4 0.0 5.7e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|385776457|ref|YP_005649025.1| - 1.9e-11 43.5 0.0 3e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|385776457|ref|YP_005649025.1| - 2.1e-08 34.2 0.1 5.6e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_24 PF13479.1 gi|385776457|ref|YP_005649025.1| - 0.0034 16.9 0.1 0.011 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|385776457|ref|YP_005649025.1| - 0.0076 16.5 0.0 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385776457|ref|YP_005649025.1| - 0.0081 16.3 0.0 0.018 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cdd1 PF11731.3 gi|385776457|ref|YP_005649025.1| - 0.018 14.9 0.0 0.048 13.5 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus Sec63 PF02889.11 gi|385776457|ref|YP_005649025.1| - 0.072 12.3 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Sec63 Brl domain HIT PF01230.18 gi|385776458|ref|YP_005649026.1| - 6.4e-13 49.0 0.0 1.2e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|385776458|ref|YP_005649026.1| - 1.8e-08 34.6 0.0 2.6e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|385776458|ref|YP_005649026.1| - 2.7e-07 30.2 0.2 4.2e-07 29.6 0.1 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 tRNA-Thr_ED PF08915.6 gi|385776458|ref|YP_005649026.1| - 0.053 13.4 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Archaea-specific editing domain of threonyl-tRNA synthetase PALP PF00291.20 gi|385776459|ref|YP_005649027.1| - 4.5e-77 259.2 0.1 5.5e-77 259.0 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|385776459|ref|YP_005649027.1| - 0.0087 16.3 0.3 0.034 14.4 0.0 2.1 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|385776459|ref|YP_005649027.1| - 0.011 15.1 1.4 0.027 13.9 0.0 2.3 2 0 0 2 2 2 0 ACT domain PDT PF00800.13 gi|385776460|ref|YP_005649028.1| - 4.6e-49 166.4 0.1 5.9e-49 166.0 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|385776460|ref|YP_005649028.1| - 2.5e-08 33.2 0.0 7e-08 31.8 0.0 1.8 1 0 0 1 1 1 1 ACT domain HTH_AsnC-type PF13404.1 gi|385776461|ref|YP_005649029.1| - 1.4e-05 24.5 0.0 0.0056 16.1 0.0 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain DUF4342 PF14242.1 gi|385776461|ref|YP_005649029.1| - 0.00099 18.8 3.8 0.015 15.0 0.1 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4342) DUF2805 PF10985.3 gi|385776461|ref|YP_005649029.1| - 0.0022 17.8 0.6 0.49 10.3 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF2805) ENT PF03735.9 gi|385776461|ref|YP_005649029.1| - 0.0035 17.0 0.4 3.3 7.4 0.0 2.7 2 0 0 2 2 2 2 ENT domain HTH_24 PF13412.1 gi|385776461|ref|YP_005649029.1| - 0.0078 15.5 1.1 0.0078 15.5 0.8 3.1 4 2 0 4 4 4 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385776461|ref|YP_005649029.1| - 0.035 13.9 0.1 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|385776461|ref|YP_005649029.1| - 0.039 13.6 0.8 2 8.1 0.0 3.2 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF3288 PF11691.3 gi|385776461|ref|YP_005649029.1| - 0.059 13.1 0.1 5.5 6.8 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3288) DUF1044 PF06296.7 gi|385776461|ref|YP_005649029.1| - 0.063 13.1 0.0 0.64 9.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1044) HTH_19 PF12844.2 gi|385776461|ref|YP_005649029.1| - 0.087 12.8 5.1 1.9 8.6 0.2 3.8 4 1 0 4 4 4 0 Helix-turn-helix domain DAO PF01266.19 gi|385776462|ref|YP_005649030.1| - 5.4e-14 51.8 0.0 2.5e-06 26.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385776462|ref|YP_005649030.1| - 9.5e-11 41.9 1.2 6.2e-06 26.2 0.0 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|385776462|ref|YP_005649030.1| - 1e-09 37.7 0.1 3.8e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|385776462|ref|YP_005649030.1| - 4.4e-08 32.0 0.0 0.00024 19.6 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|385776462|ref|YP_005649030.1| - 6.9e-06 25.1 1.3 0.00081 18.3 0.1 2.8 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|385776462|ref|YP_005649030.1| - 6.9e-06 25.9 0.1 0.00012 22.0 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|385776462|ref|YP_005649030.1| - 2.4e-05 24.5 0.0 0.0078 16.2 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385776462|ref|YP_005649030.1| - 0.00018 21.2 0.0 0.0026 17.5 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|385776462|ref|YP_005649030.1| - 0.00021 20.3 0.0 0.0073 15.2 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|385776462|ref|YP_005649030.1| - 0.0016 17.6 0.0 0.0027 16.8 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|385776462|ref|YP_005649030.1| - 0.0022 17.1 0.3 0.0062 15.6 0.0 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|385776462|ref|YP_005649030.1| - 0.0035 17.6 1.4 0.53 10.7 0.0 2.8 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|385776462|ref|YP_005649030.1| - 0.024 13.2 0.0 0.058 12.0 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase FAD_oxidored PF12831.2 gi|385776462|ref|YP_005649030.1| - 0.065 12.3 0.1 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Adenylsucc_synt PF00709.16 gi|385776463|ref|YP_005649031.1| - 1.5e-73 247.8 0.1 5.1e-40 137.4 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DUF1297 PF06973.7 gi|385776464|ref|YP_005649032.1| - 1.2e-78 262.7 0.0 1.6e-78 262.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|385776464|ref|YP_005649032.1| - 2.3e-46 156.5 0.0 3.5e-46 155.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|385776464|ref|YP_005649032.1| - 1.4e-05 24.8 0.0 0.00048 19.9 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain DUF1297 PF06973.7 gi|385776465|ref|YP_005649033.1| - 2.3e-75 252.0 0.2 3.1e-75 251.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|385776465|ref|YP_005649033.1| - 4.6e-42 142.6 0.2 8.1e-42 141.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|385776465|ref|YP_005649033.1| - 0.0034 17.1 0.0 0.029 14.1 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385776465|ref|YP_005649033.1| - 0.0038 17.1 0.4 0.01 15.7 0.3 1.8 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|385776465|ref|YP_005649033.1| - 0.0089 15.6 0.2 0.025 14.1 0.1 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|385776465|ref|YP_005649033.1| - 0.039 13.2 0.4 1.1 8.6 0.1 2.2 2 0 0 2 2 2 0 ATP-grasp domain GSH-S_ATP PF02955.11 gi|385776465|ref|YP_005649033.1| - 0.062 12.4 0.1 0.11 11.6 0.1 1.4 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.12 gi|385776465|ref|YP_005649033.1| - 0.073 12.3 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Lyase_1 PF00206.15 gi|385776466|ref|YP_005649034.1| - 5.1e-43 147.4 0.0 7.8e-43 146.8 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|385776466|ref|YP_005649034.1| - 2.8e-22 78.5 0.1 8.2e-22 77.0 0.0 1.9 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.4 gi|385776466|ref|YP_005649034.1| - 0.0096 15.9 0.4 0.17 11.9 0.0 3.1 4 0 0 4 4 4 1 Fumarase C C-terminus COX3 PF00510.13 gi|385776466|ref|YP_005649034.1| - 0.18 11.2 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit III AIRS PF00586.19 gi|385776467|ref|YP_005649035.1| - 2.2e-11 43.8 0.0 3.6e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Radical_SAM PF04055.16 gi|385776468|ref|YP_005649036.1| - 6.8e-20 71.8 0.0 6.8e-20 71.8 0.0 2.3 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|385776468|ref|YP_005649036.1| - 3.4e-09 36.7 0.0 1.1e-08 35.1 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|385776468|ref|YP_005649036.1| - 9e-08 32.3 0.0 2.1e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_S13 PF02113.10 gi|385776468|ref|YP_005649036.1| - 0.13 10.7 0.0 0.28 9.6 0.0 1.4 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family Pribosyltran PF00156.22 gi|385776470|ref|YP_005649038.1| - 8.1e-23 80.5 0.3 1.2e-22 79.9 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|385776470|ref|YP_005649038.1| - 0.017 14.4 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase GatB_N PF02934.10 gi|385776471|ref|YP_005649039.1| - 3.7e-105 350.9 0.0 5.3e-105 350.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|385776471|ref|YP_005649039.1| - 1.9e-41 141.2 7.1 3.5e-41 140.3 4.9 1.5 1 0 0 1 1 1 1 GatB domain Ribosomal_L17 PF01196.14 gi|385776471|ref|YP_005649039.1| - 2.2 8.8 5.9 12 6.5 0.1 3.7 2 1 1 3 3 3 0 Ribosomal protein L17 hEGF PF12661.2 gi|385776471|ref|YP_005649039.1| - 8.5 6.7 5.8 0.49 10.5 0.3 1.9 2 0 0 2 2 2 0 Human growth factor-like EGF UPRTase PF14681.1 gi|385776472|ref|YP_005649040.1| - 8e-54 181.9 0.0 9.1e-54 181.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|385776472|ref|YP_005649040.1| - 1.6e-07 31.1 1.7 2.8e-07 30.2 1.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|385776472|ref|YP_005649040.1| - 0.062 12.5 0.0 0.11 11.8 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase DUF2338 PF10100.4 gi|385776472|ref|YP_005649040.1| - 0.086 11.1 0.1 0.16 10.3 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2338) Ribosomal_S28e PF01200.13 gi|385776473|ref|YP_005649041.1| - 1.8e-30 104.4 6.6 2.3e-30 104.1 4.6 1.3 1 1 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|385776473|ref|YP_005649041.1| - 0.021 14.5 0.7 0.75 9.6 0.1 2.9 2 1 0 2 2 2 0 KOW motif Ribosomal_L24e PF01246.15 gi|385776474|ref|YP_005649042.1| - 2.6e-21 75.2 1.4 2.8e-21 75.1 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|385776474|ref|YP_005649042.1| - 1.2e-06 28.0 1.0 1.2e-06 28.0 0.7 1.4 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.13 gi|385776474|ref|YP_005649042.1| - 0.0005 19.8 0.0 0.00088 19.0 0.0 1.4 1 1 0 1 1 1 1 MYND finger YHS PF04945.8 gi|385776474|ref|YP_005649042.1| - 0.002 17.9 0.3 0.0033 17.2 0.2 1.4 1 1 0 1 1 1 1 YHS domain DUF581 PF04570.9 gi|385776474|ref|YP_005649042.1| - 0.0028 16.8 0.4 0.0051 16.0 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF581) DUF2116 PF09889.4 gi|385776474|ref|YP_005649042.1| - 0.031 14.0 2.4 1.7 8.5 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.5 gi|385776474|ref|YP_005649042.1| - 0.053 13.6 1.1 0.13 12.4 0.1 2.0 1 1 1 2 2 2 0 Archaeal TRASH domain CpXC PF14353.1 gi|385776474|ref|YP_005649042.1| - 0.13 12.2 0.1 0.15 12.0 0.1 1.1 1 0 0 1 1 1 0 CpXC protein zf-C4_ClpX PF06689.8 gi|385776474|ref|YP_005649042.1| - 0.14 11.6 0.1 0.14 11.6 0.0 1.5 2 0 0 2 2 2 0 ClpX C4-type zinc finger DUF2175 PF09943.4 gi|385776474|ref|YP_005649042.1| - 0.15 12.1 0.2 0.16 12.0 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) zinc_ribbon_2 PF13240.1 gi|385776474|ref|YP_005649042.1| - 0.24 10.9 0.3 0.24 10.9 0.2 2.0 2 1 0 1 1 1 0 zinc-ribbon domain DUF329 PF03884.9 gi|385776474|ref|YP_005649042.1| - 3.1 7.4 5.0 18 4.9 3.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF329) NDK PF00334.14 gi|385776475|ref|YP_005649043.1| - 3.3e-58 195.2 0.0 3.6e-58 195.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.22 gi|385776476|ref|YP_005649044.1| - 9.2e-31 106.7 0.0 3.6e-30 104.8 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|385776476|ref|YP_005649044.1| - 4.1e-24 84.0 2.2 4.1e-24 84.0 1.5 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.3 gi|385776476|ref|YP_005649044.1| - 1.4e-17 63.5 4.9 3.7e-17 62.1 1.8 2.4 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|385776476|ref|YP_005649044.1| - 3.3e-11 43.1 3.9 8.3e-11 41.8 0.0 2.8 3 0 0 3 3 3 1 Elongation factor Tu domain 2 Miro PF08477.8 gi|385776476|ref|YP_005649044.1| - 8.9e-07 29.4 0.1 3e-06 27.7 0.0 2.0 2 0 0 2 2 1 1 Miro-like protein MMR_HSR1 PF01926.18 gi|385776476|ref|YP_005649044.1| - 1.2e-06 28.4 0.3 5.1e-06 26.4 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase Ras PF00071.17 gi|385776476|ref|YP_005649044.1| - 0.0023 17.3 0.0 0.011 15.1 0.0 2.2 1 1 0 1 1 1 1 Ras family Arf PF00025.16 gi|385776476|ref|YP_005649044.1| - 0.0038 16.4 0.3 3.4 6.8 0.0 3.1 2 1 0 2 2 2 2 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|385776476|ref|YP_005649044.1| - 0.017 14.9 2.0 0.079 12.7 0.0 2.7 4 0 0 4 4 3 0 Dynamin family DUF367 PF04034.8 gi|385776476|ref|YP_005649044.1| - 0.029 13.9 0.0 0.1 12.2 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF367) PduV-EutP PF10662.4 gi|385776476|ref|YP_005649044.1| - 0.05 13.1 0.0 0.95 8.9 0.0 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Peripla_BP_4 PF13407.1 gi|385776476|ref|YP_005649044.1| - 0.076 12.3 0.1 0.2 10.9 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein domain SRPRB PF09439.5 gi|385776476|ref|YP_005649044.1| - 0.25 10.5 3.7 1.3 8.1 0.2 3.2 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit RNA_pol_Rpb5_C PF01191.14 gi|385776477|ref|YP_005649045.1| - 1.4e-28 98.2 0.3 1.5e-28 98.1 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.23 gi|385776478|ref|YP_005649046.1| - 8.1e-125 416.5 0.0 1.3e-124 415.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|385776478|ref|YP_005649046.1| - 2.3e-60 203.0 0.0 4.2e-60 202.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|385776478|ref|YP_005649046.1| - 2.4e-41 141.2 0.0 4e-41 140.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|385776478|ref|YP_005649046.1| - 4.7e-28 97.2 0.0 9.7e-28 96.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|385776478|ref|YP_005649046.1| - 3.9e-26 90.5 0.0 9.8e-26 89.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|385776478|ref|YP_005649046.1| - 3e-17 62.1 2.8 6.7e-17 61.0 1.9 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|385776478|ref|YP_005649046.1| - 4e-15 55.5 0.3 9.3e-15 54.3 0.2 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|385776479|ref|YP_005649047.1| - 3.1e-91 306.1 0.1 6.6e-90 301.7 0.1 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|385776479|ref|YP_005649047.1| - 2.2e-69 232.6 0.0 5.3e-69 231.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|385776479|ref|YP_005649047.1| - 2.2e-38 131.4 0.0 3.6e-38 130.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|385776479|ref|YP_005649047.1| - 2.8e-33 113.9 0.0 5.7e-33 112.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|385776479|ref|YP_005649047.1| - 1.2e-26 93.6 0.1 2.3e-26 92.6 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|385776479|ref|YP_005649047.1| - 6.2e-05 22.0 0.0 0.0092 15.1 0.0 2.8 2 1 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|385776479|ref|YP_005649047.1| - 0.051 13.4 2.3 6.2 6.7 0.0 2.6 2 1 0 2 2 2 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|385776479|ref|YP_005649047.1| - 0.068 12.8 8.6 0.53 9.9 0.2 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|385776479|ref|YP_005649047.1| - 0.25 11.0 0.8 1.6 8.4 0.1 2.5 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|385776479|ref|YP_005649047.1| - 1.2 9.1 4.2 17 5.4 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385776479|ref|YP_005649047.1| - 1.5 8.6 7.6 1.6 8.5 0.0 3.1 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385776479|ref|YP_005649047.1| - 2.6 7.6 9.6 4.9 6.7 0.5 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|385776479|ref|YP_005649047.1| - 2.7 8.1 8.9 1.7 8.7 0.2 3.5 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.3 gi|385776479|ref|YP_005649047.1| - 2.8 7.9 6.1 13 5.8 0.0 3.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) GFA PF04828.9 gi|385776479|ref|YP_005649047.1| - 5.9 6.9 5.0 1.4 8.9 0.5 2.2 2 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RNA_pol_Rpb1_5 PF04998.12 gi|385776480|ref|YP_005649048.1| - 7.1e-55 186.2 2.8 9.7e-55 185.7 2.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_7 PF04990.7 gi|385776480|ref|YP_005649048.1| - 0.042 13.5 1.3 0.16 11.6 0.2 2.2 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 7 Ribosomal_L7Ae PF01248.21 gi|385776481|ref|YP_005649049.1| - 7.2e-17 60.6 0.0 8e-17 60.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|385776482|ref|YP_005649050.1| - 6.9e-11 41.5 5.9 7.1e-06 25.4 1.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|385776482|ref|YP_005649050.1| - 1e-10 41.2 3.2 1.2e-10 41.0 0.3 2.1 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|385776482|ref|YP_005649050.1| - 4.7e-08 32.5 1.8 6.3e-07 28.9 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|385776482|ref|YP_005649050.1| - 4.1e-05 23.1 1.1 0.12 12.0 0.1 2.2 2 0 0 2 2 2 2 KH domain RNA_pol_Rpc34 PF05158.7 gi|385776482|ref|YP_005649050.1| - 0.076 12.1 0.4 0.095 11.8 0.3 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit KH_3 PF13014.1 gi|385776482|ref|YP_005649050.1| - 3.7 7.2 7.2 8.6 6.1 0.5 3.2 2 2 1 3 3 3 0 KH domain Ribosom_S12_S23 PF00164.20 gi|385776483|ref|YP_005649051.1| - 9e-41 138.1 0.5 1.1e-40 137.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DNase-RNase PF02577.9 gi|385776484|ref|YP_005649052.1| - 6.8e-08 31.8 0.2 9.6e-08 31.3 0.1 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Ribosomal_S7 PF00177.16 gi|385776485|ref|YP_005649053.1| - 4.9e-47 159.2 0.1 5.7e-47 159.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|385776486|ref|YP_005649054.1| - 8.2e-56 188.4 0.0 1.1e-55 187.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|385776486|ref|YP_005649054.1| - 2.5e-31 107.7 0.1 1.1e-30 105.7 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|385776486|ref|YP_005649054.1| - 1.1e-20 73.4 5.1 6.3e-20 71.0 2.2 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|385776486|ref|YP_005649054.1| - 8.1e-09 35.0 3.0 2.1e-08 33.6 2.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|385776486|ref|YP_005649054.1| - 1.3e-06 28.3 0.1 3e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|385776486|ref|YP_005649054.1| - 0.00022 21.7 0.1 0.0024 18.3 0.0 2.3 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|385776486|ref|YP_005649054.1| - 0.0028 16.8 0.1 1.4 8.0 0.0 2.3 1 1 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|385776486|ref|YP_005649054.1| - 0.006 15.6 0.1 0.024 13.6 0.0 1.9 1 1 0 1 1 1 1 Septin Dynamin_N PF00350.18 gi|385776486|ref|YP_005649054.1| - 0.025 14.3 0.0 3.5 7.4 0.0 2.5 1 1 1 2 2 2 0 Dynamin family Ribosomal_S10 PF00338.17 gi|385776487|ref|YP_005649055.1| - 7.8e-30 102.5 0.1 8.7e-30 102.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e DUF1464 PF07318.7 gi|385776490|ref|YP_005649058.1| - 5.1e-90 301.7 0.1 8e-89 297.8 0.1 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) NTP_transf_2 PF01909.18 gi|385776491|ref|YP_005649059.1| - 4.6e-06 26.8 0.2 1.1e-05 25.6 0.2 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain CitG PF01874.11 gi|385776492|ref|YP_005649060.1| - 2.9e-44 151.3 0.0 3.3e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase vWA-TerF-like PF10138.4 gi|385776492|ref|YP_005649060.1| - 0.032 14.0 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 vWA found in TerF C terminus Metallophos_3 PF14582.1 gi|385776493|ref|YP_005649061.1| - 3.9e-07 29.4 0.1 3.7e-06 26.2 0.0 1.9 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.2 gi|385776493|ref|YP_005649061.1| - 0.00067 19.5 0.0 0.00081 19.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Acetyltransf_1 PF00583.19 gi|385776494|ref|YP_005649062.1| - 3.7e-20 71.7 0.0 5.5e-20 71.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|385776494|ref|YP_005649062.1| - 1.6e-09 37.8 1.0 3.4e-09 36.8 0.7 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|385776494|ref|YP_005649062.1| - 3.9e-09 36.6 0.0 5.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|385776494|ref|YP_005649062.1| - 4.4e-09 36.3 0.0 7.3e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385776494|ref|YP_005649062.1| - 5e-09 36.2 0.0 8.4e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385776494|ref|YP_005649062.1| - 3.4e-08 33.1 0.1 6e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|385776494|ref|YP_005649062.1| - 1.6e-07 31.5 0.0 3.6e-07 30.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385776494|ref|YP_005649062.1| - 1.3e-06 28.2 0.1 4.7e-06 26.4 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|385776494|ref|YP_005649062.1| - 0.0068 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.1 gi|385776494|ref|YP_005649062.1| - 0.054 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DFP PF04127.10 gi|385776495|ref|YP_005649063.1| - 1.1e-55 188.0 0.0 1.5e-53 181.2 0.0 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|385776495|ref|YP_005649063.1| - 2.5e-31 108.0 0.6 4.9e-31 107.0 0.4 1.5 1 0 0 1 1 1 1 Flavoprotein Radical_SAM PF04055.16 gi|385776495|ref|YP_005649063.1| - 0.032 14.4 0.4 0.071 13.2 0.3 1.6 1 0 0 1 1 1 0 Radical SAM superfamily ResIII PF04851.10 gi|385776498|ref|YP_005649066.1| - 4.2e-20 72.3 0.0 1.2e-19 70.8 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385776498|ref|YP_005649066.1| - 2.2e-16 59.4 0.0 5.3e-16 58.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385776498|ref|YP_005649066.1| - 1.2e-13 50.9 0.0 5.5e-12 45.5 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase T2SE PF00437.15 gi|385776498|ref|YP_005649066.1| - 0.0018 17.2 0.0 0.0032 16.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|385776498|ref|YP_005649066.1| - 0.01 15.5 0.0 0.029 14.1 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|385776498|ref|YP_005649066.1| - 0.033 14.3 0.2 0.64 10.1 0.1 2.8 3 1 0 3 3 3 0 AAA domain PhoH PF02562.11 gi|385776498|ref|YP_005649066.1| - 0.044 13.0 0.0 0.098 11.8 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein 3-HAO PF06052.7 gi|385776498|ref|YP_005649066.1| - 0.07 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase DUF2075 PF09848.4 gi|385776498|ref|YP_005649066.1| - 0.085 11.8 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Peptidase_S9 PF00326.16 gi|385776499|ref|YP_005649067.1| - 1e-40 139.2 0.0 1.8e-40 138.4 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|385776499|ref|YP_005649067.1| - 1.1e-13 51.5 0.1 5.5e-13 49.3 0.1 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|385776499|ref|YP_005649067.1| - 1.6e-13 50.6 0.0 2.8e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|385776499|ref|YP_005649067.1| - 1.2e-05 24.9 0.7 0.0028 17.2 0.2 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|385776499|ref|YP_005649067.1| - 7e-05 22.3 0.2 0.0051 16.2 0.2 2.2 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|385776499|ref|YP_005649067.1| - 0.00013 21.3 0.0 0.16 11.1 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family LIP PF03583.9 gi|385776499|ref|YP_005649067.1| - 0.0011 18.2 0.9 0.012 14.8 0.2 2.1 2 0 0 2 2 2 1 Secretory lipase Abhydrolase_2 PF02230.11 gi|385776499|ref|YP_005649067.1| - 0.019 14.3 0.0 2.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase BAAT_C PF08840.6 gi|385776499|ref|YP_005649067.1| - 0.12 12.0 0.0 10 5.7 0.0 2.3 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|385776499|ref|YP_005649067.1| - 0.27 10.7 0.4 4.3 6.8 0.3 2.8 1 1 0 1 1 1 0 alpha/beta hydrolase fold Methyltransf_23 PF13489.1 gi|385776500|ref|YP_005649068.1| - 3.6e-14 52.7 0.1 1.2e-13 51.1 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385776500|ref|YP_005649068.1| - 7.7e-12 45.0 0.1 9.8e-12 44.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385776500|ref|YP_005649068.1| - 2e-09 37.7 0.0 3.6e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385776500|ref|YP_005649068.1| - 4.6e-09 36.5 0.0 8e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385776500|ref|YP_005649068.1| - 2.4e-07 31.2 0.0 4.4e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385776500|ref|YP_005649068.1| - 8.2e-07 29.4 0.0 1.8e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|385776500|ref|YP_005649068.1| - 1.2e-06 27.8 0.3 7.4e-06 25.2 0.0 2.1 2 1 0 2 2 2 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|385776500|ref|YP_005649068.1| - 0.00083 18.5 0.0 0.0018 17.3 0.0 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|385776500|ref|YP_005649068.1| - 0.0087 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.13 gi|385776500|ref|YP_005649068.1| - 0.028 13.7 1.1 2.2 7.5 0.1 3.1 2 1 1 3 3 3 0 CheR methyltransferase, SAM binding domain VirE3 PF06661.6 gi|385776500|ref|YP_005649068.1| - 0.036 13.1 0.4 0.062 12.4 0.3 1.3 1 0 0 1 1 1 0 VirE3 NodS PF05401.6 gi|385776500|ref|YP_005649068.1| - 0.076 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) EamA PF00892.15 gi|385776501|ref|YP_005649069.1| - 4.9e-06 26.5 15.4 2.4e-05 24.3 10.7 1.8 1 1 0 1 1 1 1 EamA-like transporter family bPH_5 PF10882.3 gi|385776501|ref|YP_005649069.1| - 0.047 13.4 0.3 0.23 11.2 0.0 2.1 1 1 0 2 2 2 0 Bacterial PH domain EamA PF00892.15 gi|385776502|ref|YP_005649070.1| - 1.2e-09 38.2 18.9 1.4e-09 38.0 13.1 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|385776502|ref|YP_005649070.1| - 0.2 11.8 10.3 0.29 11.3 7.1 1.3 1 0 0 1 1 1 0 Multidrug resistance efflux transporter UPF0060 PF02694.10 gi|385776502|ref|YP_005649070.1| - 0.23 11.4 6.8 0.4 10.7 4.1 1.7 2 1 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family SUR7 PF06687.7 gi|385776502|ref|YP_005649070.1| - 0.3 10.6 5.9 0.44 10.0 4.1 1.2 1 0 0 1 1 1 0 SUR7/PalI family PEPCK PF00821.13 gi|385776503|ref|YP_005649071.1| - 0.11 10.5 0.0 0.11 10.5 0.0 1.0 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase DUF1286 PF06939.6 gi|385776504|ref|YP_005649072.1| - 7.7e-49 164.6 7.9 7.7e-49 164.6 5.5 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) DUF3084 PF11283.3 gi|385776504|ref|YP_005649072.1| - 0.07 12.9 1.1 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) DUF457 PF04307.9 gi|385776504|ref|YP_005649072.1| - 0.46 9.8 15.0 2.9 7.2 10.4 2.0 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Plasmid_stabil PF05016.9 gi|385776505|ref|YP_005649073.1| - 0.0035 17.6 0.1 0.0042 17.4 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein SoxE PF06525.6 gi|385776506|ref|YP_005649074.1| - 0.026 13.8 4.7 0.016 14.4 2.1 1.5 1 1 0 1 1 1 0 Sulfocyanin (SoxE) SVM_signal PF12113.3 gi|385776506|ref|YP_005649074.1| - 0.55 10.1 10.4 1.4 8.7 7.2 1.7 1 0 0 1 1 1 0 SVM protein signal sequence PGM_PMM_I PF02878.11 gi|385776508|ref|YP_005649076.1| - 4.9e-45 152.4 0.0 1.4e-44 150.9 0.0 1.8 1 1 1 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|385776508|ref|YP_005649076.1| - 3.8e-21 75.3 0.0 7.5e-21 74.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|385776508|ref|YP_005649076.1| - 1.9e-16 60.0 0.0 4.7e-16 58.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|385776508|ref|YP_005649076.1| - 4.2e-10 39.4 0.1 1.2e-09 38.0 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF3083 PF11281.3 gi|385776508|ref|YP_005649076.1| - 0.094 11.8 0.1 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3083) Trm112p PF03966.11 gi|385776509|ref|YP_005649077.1| - 1.4e-18 66.9 2.6 1.9e-18 66.5 1.8 1.2 1 0 0 1 1 1 1 Trm112p-like protein Pico_P2A PF00947.14 gi|385776509|ref|YP_005649077.1| - 0.071 12.9 0.1 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Picornavirus core protein 2A PHD PF00628.24 gi|385776509|ref|YP_005649077.1| - 0.4 10.3 3.7 0.61 9.8 0.6 2.3 2 0 0 2 2 2 0 PHD-finger DUF164 PF02591.10 gi|385776509|ref|YP_005649077.1| - 1.8 8.4 5.0 2.3 8.0 0.8 2.7 2 1 1 3 3 3 0 Putative zinc ribbon domain DUF2153 PF09921.4 gi|385776510|ref|YP_005649078.1| - 8.3e-59 196.7 8.2 9.4e-59 196.5 5.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF1912 PF08930.5 gi|385776510|ref|YP_005649078.1| - 0.059 13.4 1.2 6.6 6.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1912) Beta-Casp PF10996.3 gi|385776510|ref|YP_005649078.1| - 0.095 12.6 0.4 0.13 12.1 0.3 1.2 1 0 0 1 1 1 0 Beta-Casp domain VPR PF00522.13 gi|385776510|ref|YP_005649078.1| - 0.099 12.4 0.5 0.25 11.1 0.2 1.9 1 1 0 1 1 1 0 VPR/VPX protein UPF0728 PF15092.1 gi|385776510|ref|YP_005649078.1| - 0.12 12.3 0.0 0.39 10.6 0.0 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0728 DUF4248 PF14053.1 gi|385776510|ref|YP_005649078.1| - 0.25 10.9 1.6 1.6 8.3 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4248) zf-CpG_bind_C PF12269.3 gi|385776510|ref|YP_005649078.1| - 0.27 10.6 1.5 0.49 9.8 0.2 1.8 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain DUF1411 PF07199.6 gi|385776511|ref|YP_005649079.1| - 2.2e-05 23.9 1.8 2.6e-05 23.7 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1411) OMPdecase PF00215.19 gi|385776512|ref|YP_005649080.1| - 2.7e-20 72.7 2.8 3.7e-20 72.3 1.9 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|385776512|ref|YP_005649080.1| - 0.00014 20.8 0.4 0.00026 20.0 0.2 1.6 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.14 gi|385776512|ref|YP_005649080.1| - 0.0028 17.1 2.3 0.0036 16.8 0.4 2.0 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain PEP_mutase PF13714.1 gi|385776512|ref|YP_005649080.1| - 0.018 14.2 0.1 0.041 13.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Ribul_P_3_epim PF00834.14 gi|385776512|ref|YP_005649080.1| - 0.031 13.3 0.1 0.38 9.8 0.0 2.3 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family TIM-br_sig_trns PF09370.5 gi|385776512|ref|YP_005649080.1| - 0.034 13.2 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 TIM-barrel signal transduction protein CTP_synth_N PF06418.9 gi|385776513|ref|YP_005649081.1| - 3.6e-126 419.8 4.0 5.1e-126 419.3 2.8 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|385776513|ref|YP_005649081.1| - 1.2e-49 168.4 0.0 2e-49 167.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385776513|ref|YP_005649081.1| - 1e-11 44.6 0.0 4.4e-11 42.6 0.0 1.9 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|385776513|ref|YP_005649081.1| - 1.2e-06 28.0 0.0 2e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|385776513|ref|YP_005649081.1| - 0.021 13.6 0.1 0.037 12.8 0.1 1.3 1 0 0 1 1 1 0 ArgK protein HTH_5 PF01022.15 gi|385776514|ref|YP_005649082.1| - 5.6e-13 48.3 0.8 7.5e-12 44.7 0.4 2.0 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|385776514|ref|YP_005649082.1| - 8.3e-12 44.7 0.0 1e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385776514|ref|YP_005649082.1| - 5.7e-07 29.1 0.4 5.7e-06 25.9 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|385776514|ref|YP_005649082.1| - 1.8e-06 27.9 0.2 3.1e-06 27.1 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|385776514|ref|YP_005649082.1| - 4.3e-06 26.3 0.4 7.6e-06 25.5 0.3 1.5 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385776514|ref|YP_005649082.1| - 6.1e-06 25.5 0.8 8.5e-06 25.0 0.1 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|385776514|ref|YP_005649082.1| - 1.1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385776514|ref|YP_005649082.1| - 0.00016 21.9 0.0 0.00056 20.1 0.0 1.8 1 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|385776514|ref|YP_005649082.1| - 0.00021 20.8 0.2 0.00039 20.0 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.1 gi|385776514|ref|YP_005649082.1| - 0.00044 20.3 0.1 0.00076 19.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Cdc6_C PF09079.6 gi|385776514|ref|YP_005649082.1| - 0.00095 18.8 0.3 0.0017 18.0 0.1 1.6 2 0 0 2 2 2 1 CDC6, C terminal HTH_41 PF14502.1 gi|385776514|ref|YP_005649082.1| - 0.0017 17.8 0.3 0.0055 16.2 0.0 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|385776514|ref|YP_005649082.1| - 0.0023 17.5 0.0 0.0036 16.8 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|385776514|ref|YP_005649082.1| - 0.0026 17.2 0.4 0.0043 16.6 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) UPF0122 PF04297.9 gi|385776514|ref|YP_005649082.1| - 0.0028 17.6 0.1 0.0034 17.3 0.1 1.2 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like DUF2250 PF10007.4 gi|385776514|ref|YP_005649082.1| - 0.0059 16.4 0.5 0.0079 16.0 0.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|385776514|ref|YP_005649082.1| - 0.0098 15.8 0.5 0.035 14.0 0.1 1.9 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|385776514|ref|YP_005649082.1| - 0.018 15.1 0.1 0.026 14.6 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4393 PF14337.1 gi|385776514|ref|YP_005649082.1| - 0.019 14.4 0.5 0.024 14.1 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) Sigma70_r4 PF04545.11 gi|385776514|ref|YP_005649082.1| - 0.031 13.5 0.0 0.053 12.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 GntR PF00392.16 gi|385776514|ref|YP_005649082.1| - 0.034 13.5 0.0 0.061 12.7 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family NUMOD1 PF07453.8 gi|385776514|ref|YP_005649082.1| - 0.06 13.2 0.3 0.15 11.9 0.2 1.7 1 0 0 1 1 1 0 NUMOD1 domain LexA_DNA_bind PF01726.11 gi|385776514|ref|YP_005649082.1| - 0.078 12.5 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain RPA_C PF08784.6 gi|385776514|ref|YP_005649082.1| - 0.089 13.2 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal B-block_TFIIIC PF04182.7 gi|385776514|ref|YP_005649082.1| - 0.13 12.1 0.1 0.41 10.5 0.0 1.8 1 1 1 2 2 2 0 B-block binding subunit of TFIIIC HTH_1 PF00126.22 gi|385776514|ref|YP_005649082.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family LSM PF01423.17 gi|385776515|ref|YP_005649083.1| - 3.5e-19 68.1 0.2 4.2e-19 67.8 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|385776515|ref|YP_005649083.1| - 0.092 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain AdoMet_Synthase PF01941.14 gi|385776516|ref|YP_005649084.1| - 3.6e-173 575.5 3.6 4.1e-173 575.4 2.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LRR_4 PF12799.2 gi|385776516|ref|YP_005649084.1| - 0.14 11.8 0.5 9.1 6.0 0.1 3.0 3 0 0 3 3 3 0 Leucine Rich repeats (2 copies) DUF460 PF04312.8 gi|385776517|ref|YP_005649085.1| - 3.2e-51 172.4 0.9 8.5e-51 171.0 0.6 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Cep57_CLD_2 PF14197.1 gi|385776517|ref|YP_005649085.1| - 0.78 9.7 20.3 0.092 12.6 1.8 4.0 3 1 1 4 4 4 0 Centrosome localisation domain of PPC89 RIO1 PF01163.17 gi|385776518|ref|YP_005649086.1| - 1.4e-43 148.4 0.1 1.9e-43 148.0 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|385776518|ref|YP_005649086.1| - 2e-08 34.2 0.0 4.5e-05 23.2 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|385776518|ref|YP_005649086.1| - 1.1e-07 31.3 0.1 1.8e-07 30.5 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain Rio2_N PF09202.6 gi|385776518|ref|YP_005649086.1| - 0.00023 21.1 0.2 0.0013 18.7 0.0 2.2 1 1 1 2 2 2 1 Rio2, N-terminal Kdo PF06293.9 gi|385776518|ref|YP_005649086.1| - 0.00026 20.1 0.1 0.47 9.4 0.0 2.1 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.15 gi|385776518|ref|YP_005649086.1| - 0.01 15.4 0.2 0.58 9.6 0.1 2.2 1 1 1 2 2 2 0 Choline/ethanolamine kinase FbpA PF05833.6 gi|385776519|ref|YP_005649087.1| - 1.8e-34 119.0 20.0 1.8e-34 119.0 13.8 1.4 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|385776519|ref|YP_005649087.1| - 3.6e-26 90.8 0.1 8.4e-26 89.6 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Tweety PF04906.8 gi|385776519|ref|YP_005649087.1| - 1.5 7.1 5.2 0.59 8.4 1.0 1.9 1 1 1 2 2 2 0 Tweety AKNA PF12443.3 gi|385776519|ref|YP_005649087.1| - 3.7 7.5 7.6 0.13 12.2 0.9 1.8 2 0 0 2 2 2 0 AT-hook-containing transcription factor DUF92 PF01940.11 gi|385776520|ref|YP_005649088.1| - 0.0048 16.0 0.8 0.0049 16.0 0.5 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 DUF2232 PF09991.4 gi|385776520|ref|YP_005649088.1| - 0.045 12.7 10.1 0.051 12.5 7.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) DUF543 PF04418.7 gi|385776520|ref|YP_005649088.1| - 0.063 13.2 0.3 0.063 13.2 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF543) IncA PF04156.9 gi|385776520|ref|YP_005649088.1| - 0.12 11.9 2.6 0.15 11.5 1.8 1.1 1 0 0 1 1 1 0 IncA protein DUF1430 PF07242.6 gi|385776520|ref|YP_005649088.1| - 0.15 12.1 6.9 0.032 14.3 2.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1430) Ndc1_Nup PF09531.5 gi|385776520|ref|YP_005649088.1| - 0.91 7.8 5.7 1 7.7 4.0 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF4131 PF13567.1 gi|385776520|ref|YP_005649088.1| - 3 7.2 5.9 3.6 6.9 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Mut7-C PF01927.11 gi|385776521|ref|YP_005649089.1| - 1.2e-36 125.9 5.1 3.1e-35 121.2 3.6 2.2 1 1 0 1 1 1 1 Mut7-C RNAse domain OrfB_Zn_ribbon PF07282.6 gi|385776521|ref|YP_005649089.1| - 0.0028 17.2 3.1 0.0032 17.0 1.0 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|385776521|ref|YP_005649089.1| - 0.011 15.5 0.5 0.019 14.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|385776521|ref|YP_005649089.1| - 0.013 15.2 0.7 0.023 14.4 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|385776521|ref|YP_005649089.1| - 0.019 14.7 2.0 0.036 13.8 1.4 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain IBR PF01485.16 gi|385776521|ref|YP_005649089.1| - 0.026 14.4 0.6 0.047 13.5 0.4 1.4 1 0 0 1 1 1 0 IBR domain HypA PF01155.14 gi|385776521|ref|YP_005649089.1| - 0.03 14.0 0.1 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NRDD PF13597.1 gi|385776521|ref|YP_005649089.1| - 0.044 11.8 0.3 2.4 6.1 0.1 2.0 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_5 PF13719.1 gi|385776521|ref|YP_005649089.1| - 0.049 13.2 2.4 4.6 6.9 0.2 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|385776521|ref|YP_005649089.1| - 0.063 13.3 3.4 1.5 8.9 0.5 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rep_fac-A_C PF08646.5 gi|385776521|ref|YP_005649089.1| - 0.072 12.8 2.9 0.12 12.0 2.0 1.5 1 1 0 1 1 1 0 Replication factor-A C terminal domain C1_1 PF00130.17 gi|385776521|ref|YP_005649089.1| - 0.073 12.8 0.7 0.14 11.9 0.5 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rpr2 PF04032.11 gi|385776521|ref|YP_005649089.1| - 0.074 12.9 2.0 0.18 11.6 1.0 1.8 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_4 PF13717.1 gi|385776521|ref|YP_005649089.1| - 0.12 12.0 3.1 3.8 7.2 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|385776521|ref|YP_005649089.1| - 0.28 10.9 2.9 3.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|385776521|ref|YP_005649089.1| - 0.35 10.8 4.3 2 8.4 3.1 1.9 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|385776521|ref|YP_005649089.1| - 0.46 10.0 4.9 6.6 6.3 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-MIZ PF02891.15 gi|385776521|ref|YP_005649089.1| - 0.69 9.4 5.6 3.6 7.1 4.1 1.9 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger zf-H2C2_2 PF13465.1 gi|385776521|ref|YP_005649089.1| - 0.83 10.0 2.8 2.1 8.7 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain PhnA_Zn_Ribbon PF08274.7 gi|385776521|ref|YP_005649089.1| - 0.91 9.3 5.4 5.1 6.9 3.7 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-RING_4 PF14570.1 gi|385776521|ref|YP_005649089.1| - 1.9 8.1 7.8 58 3.3 5.5 2.4 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain zf-C4_Topoisom PF01396.14 gi|385776521|ref|YP_005649089.1| - 1.9 8.0 5.2 12 5.4 0.1 2.8 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-HIT PF04438.11 gi|385776521|ref|YP_005649089.1| - 2.5 7.8 5.8 3.7 7.2 0.6 2.3 2 0 0 2 2 2 0 HIT zinc finger AMMECR1 PF01871.12 gi|385776522|ref|YP_005649090.1| - 2.3e-56 189.5 0.0 2.8e-56 189.3 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.1 gi|385776523|ref|YP_005649091.1| - 8.3e-32 108.8 2.4 4.6e-17 61.5 1.2 2.3 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|385776523|ref|YP_005649091.1| - 1.2e-05 25.4 3.9 0.033 14.3 0.2 4.0 2 2 0 2 2 2 2 Thioredoxin-like domain Thioredoxin PF00085.15 gi|385776523|ref|YP_005649091.1| - 1.9e-05 24.2 0.9 0.038 13.6 0.2 2.3 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_5 PF13743.1 gi|385776523|ref|YP_005649091.1| - 0.0056 16.2 0.0 0.11 12.0 0.0 2.4 2 0 0 2 2 2 1 Thioredoxin TrbC_Ftype PF09673.5 gi|385776523|ref|YP_005649091.1| - 0.008 15.7 0.7 0.21 11.2 0.0 2.5 2 1 0 2 2 2 1 Type-F conjugative transfer system pilin assembly protein Glutaredoxin PF00462.19 gi|385776523|ref|YP_005649091.1| - 0.028 14.4 6.4 3.8 7.5 0.0 3.5 2 1 0 2 2 2 0 Glutaredoxin Thioredoxin_7 PF13899.1 gi|385776523|ref|YP_005649091.1| - 0.043 13.8 0.4 1 9.4 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|385776523|ref|YP_005649091.1| - 0.058 13.4 8.1 1.7 8.6 0.2 3.6 2 2 2 4 4 4 0 Thioredoxin PDDEXK_1 PF12705.2 gi|385776523|ref|YP_005649091.1| - 0.081 12.2 0.0 8.6 5.6 0.0 2.2 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily RHH_1 PF01402.16 gi|385776524|ref|YP_005649092.1| - 0.00013 21.7 0.3 0.00057 19.6 0.1 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family AAA_13 PF13166.1 gi|385776524|ref|YP_005649092.1| - 0.00027 19.5 2.8 0.00027 19.5 1.9 1.9 2 0 0 2 2 2 1 AAA domain DUF3782 PF12644.2 gi|385776524|ref|YP_005649092.1| - 0.0011 18.7 0.1 1.3 8.8 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF3782) Herpes_UL6 PF01763.11 gi|385776524|ref|YP_005649092.1| - 0.003 15.7 2.5 0.0042 15.3 1.7 1.2 1 0 0 1 1 1 1 Herpesvirus UL6 like Matrilin_ccoil PF10393.4 gi|385776524|ref|YP_005649092.1| - 0.015 14.6 0.1 0.038 13.3 0.1 1.7 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin TBPIP PF07106.8 gi|385776524|ref|YP_005649092.1| - 0.015 14.8 5.9 0.015 14.8 4.1 1.8 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF904 PF06005.7 gi|385776524|ref|YP_005649092.1| - 0.035 14.3 1.9 0.035 14.3 1.3 2.4 3 0 0 3 3 2 0 Protein of unknown function (DUF904) DUF1664 PF07889.7 gi|385776524|ref|YP_005649092.1| - 0.036 13.8 2.7 0.082 12.7 1.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF972 PF06156.8 gi|385776524|ref|YP_005649092.1| - 0.049 13.9 2.1 0.13 12.6 1.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Allexi_40kDa PF05549.6 gi|385776524|ref|YP_005649092.1| - 0.062 12.5 3.8 0.039 13.2 0.9 1.8 2 0 0 2 2 2 0 Allexivirus 40kDa protein Uds1 PF15456.1 gi|385776524|ref|YP_005649092.1| - 0.068 13.1 2.1 0.088 12.8 0.4 2.0 2 0 0 2 2 2 0 Up-regulated During Septation IncA PF04156.9 gi|385776524|ref|YP_005649092.1| - 0.069 12.7 3.0 0.059 12.9 0.9 1.7 1 1 0 1 1 1 0 IncA protein Prefoldin_3 PF13758.1 gi|385776524|ref|YP_005649092.1| - 0.12 12.2 5.3 0.062 13.0 1.5 2.3 2 1 0 2 2 2 0 Prefoldin subunit DUF3573 PF12097.3 gi|385776524|ref|YP_005649092.1| - 0.13 10.8 2.2 0.21 10.1 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) YscO PF07321.7 gi|385776524|ref|YP_005649092.1| - 0.24 11.2 2.3 0.16 11.7 0.2 1.8 2 0 0 2 2 2 0 Type III secretion protein YscO DivIC PF04977.10 gi|385776524|ref|YP_005649092.1| - 0.42 10.1 5.0 1.5 8.4 0.3 3.1 3 0 0 3 3 3 0 Septum formation initiator DUF3373 PF11853.3 gi|385776524|ref|YP_005649092.1| - 0.43 9.0 4.9 0.86 8.0 3.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) FliD_N PF02465.13 gi|385776524|ref|YP_005649092.1| - 0.5 10.7 3.9 0.45 10.8 1.3 1.9 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus PspB PF06667.7 gi|385776524|ref|YP_005649092.1| - 0.52 10.2 5.1 1.1 9.1 0.3 2.8 3 0 0 3 3 3 0 Phage shock protein B Fib_alpha PF08702.5 gi|385776524|ref|YP_005649092.1| - 1.8 8.7 9.1 0.65 10.1 3.1 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.1 gi|385776524|ref|YP_005649092.1| - 2.2 8.6 6.0 0.74 10.1 1.7 2.1 2 0 0 2 2 2 0 Snapin/Pallidin Tropomyosin_1 PF12718.2 gi|385776524|ref|YP_005649092.1| - 2.5 7.9 8.9 0.3 10.9 2.3 2.2 2 0 0 2 2 2 0 Tropomyosin like bZIP_1 PF00170.16 gi|385776524|ref|YP_005649092.1| - 3.2 7.7 5.5 0.65 10.0 0.3 2.4 2 0 0 2 2 2 0 bZIP transcription factor dUTPase PF00692.14 gi|385776525|ref|YP_005649093.1| - 8e-20 70.6 0.0 1.1e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|385776525|ref|YP_005649093.1| - 0.0012 17.2 0.0 0.04 12.3 0.0 2.3 2 1 0 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DNA_ligase_A_M PF01068.16 gi|385776526|ref|YP_005649094.1| - 9.2e-61 204.7 0.9 1.5e-60 204.0 0.6 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|385776526|ref|YP_005649094.1| - 2.7e-54 183.6 0.5 5e-54 182.8 0.3 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|385776526|ref|YP_005649094.1| - 1.9e-26 92.2 0.0 3.6e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|385776526|ref|YP_005649094.1| - 0.05 13.2 1.2 1.2 8.8 0.8 2.7 1 1 0 1 1 1 0 DNA ligase OB-like domain Lactamase_B_2 PF12706.2 gi|385776527|ref|YP_005649095.1| - 1.6e-06 27.7 0.3 3.5e-06 26.7 0.2 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|385776527|ref|YP_005649095.1| - 7.6e-05 22.7 0.3 0.00014 21.8 0.2 1.4 1 0 0 1 1 1 1 DNA repair metallo-beta-lactamase RMMBL PF07521.7 gi|385776527|ref|YP_005649095.1| - 0.0022 17.8 0.0 0.0045 16.7 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|385776527|ref|YP_005649095.1| - 0.0055 16.3 2.1 0.014 15.0 1.4 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DAO PF01266.19 gi|385776528|ref|YP_005649096.1| - 3.1e-49 167.7 0.0 3.6e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|385776528|ref|YP_005649096.1| - 1.9e-05 24.4 0.0 0.0065 16.2 0.0 2.2 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|385776528|ref|YP_005649096.1| - 3.4e-05 22.8 0.0 0.00087 18.2 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|385776528|ref|YP_005649096.1| - 0.00026 21.1 0.0 0.00043 20.4 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385776528|ref|YP_005649096.1| - 0.001 19.0 0.0 0.0021 18.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|385776528|ref|YP_005649096.1| - 0.0012 18.7 0.2 1.1 9.1 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|385776528|ref|YP_005649096.1| - 0.012 14.3 0.0 0.55 8.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Thi4 PF01946.12 gi|385776528|ref|YP_005649096.1| - 0.014 14.4 0.0 0.029 13.4 0.0 1.5 1 0 0 1 1 1 0 Thi4 family GIIM PF08388.6 gi|385776528|ref|YP_005649096.1| - 0.018 14.8 0.0 0.046 13.5 0.0 1.7 1 0 0 1 1 1 0 Group II intron, maturase-specific domain HI0933_like PF03486.9 gi|385776528|ref|YP_005649096.1| - 0.088 11.2 0.0 1.7 7.0 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Lycopene_cycl PF05834.7 gi|385776528|ref|YP_005649096.1| - 0.15 10.9 0.0 1.1 8.0 0.0 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein Fer2_BFD PF04324.10 gi|385776529|ref|YP_005649097.1| - 3.8e-06 26.8 0.9 7e-06 25.9 0.6 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_3 PF13738.1 gi|385776529|ref|YP_005649097.1| - 0.00025 21.1 0.0 0.075 13.0 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385776529|ref|YP_005649097.1| - 0.0038 17.1 0.0 0.028 14.3 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Phosphodiest PF01663.17 gi|385776530|ref|YP_005649098.1| - 8.8e-33 114.1 0.2 9.2e-16 58.1 0.0 2.0 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|385776530|ref|YP_005649098.1| - 1.5e-05 24.7 0.0 0.0013 18.3 0.0 2.5 2 0 0 2 2 2 2 PglZ domain Sulfatase PF00884.18 gi|385776530|ref|YP_005649098.1| - 0.018 14.2 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 0 Sulfatase RRM_2 PF04059.7 gi|385776531|ref|YP_005649099.1| - 0.034 14.1 0.2 0.05 13.6 0.1 1.5 1 1 0 1 1 1 0 RNA recognition motif 2 HEM4 PF02602.10 gi|385776532|ref|YP_005649100.1| - 2.9e-27 95.4 0.0 3.5e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Porphobil_deam PF01379.15 gi|385776533|ref|YP_005649101.1| - 4.4e-57 192.4 0.4 5.4e-57 192.1 0.3 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|385776533|ref|YP_005649101.1| - 2.1e-07 30.9 0.0 5.6e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|385776534|ref|YP_005649102.1| - 5e-66 222.8 0.0 6.7e-66 222.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III ALAD PF00490.16 gi|385776535|ref|YP_005649103.1| - 1.3e-140 467.9 0.2 1.5e-140 467.7 0.2 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase GlutR_N PF05201.10 gi|385776536|ref|YP_005649104.1| - 1.7e-33 115.3 0.3 4.5e-33 113.9 0.0 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|385776536|ref|YP_005649104.1| - 6.6e-22 78.0 0.0 1.6e-21 76.8 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|385776536|ref|YP_005649104.1| - 2.4e-12 46.6 0.2 3.2e-11 43.0 0.0 2.4 1 1 1 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|385776536|ref|YP_005649104.1| - 8.2e-07 29.3 0.0 1.9e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|385776536|ref|YP_005649104.1| - 3.5e-05 23.6 0.8 0.00036 20.3 0.0 2.7 3 1 0 3 3 3 1 ThiF family NAD_binding_2 PF03446.10 gi|385776536|ref|YP_005649104.1| - 8.7e-05 22.4 0.2 0.00031 20.6 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|385776536|ref|YP_005649104.1| - 0.00017 21.5 0.4 0.00041 20.3 0.1 1.8 2 0 0 2 2 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|385776536|ref|YP_005649104.1| - 0.0002 20.4 0.0 0.0003 19.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|385776536|ref|YP_005649104.1| - 0.00054 19.1 0.1 0.00095 18.3 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|385776536|ref|YP_005649104.1| - 0.0012 19.0 0.0 0.0038 17.4 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|385776536|ref|YP_005649104.1| - 0.0017 18.0 2.3 0.0019 17.8 0.0 2.2 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|385776536|ref|YP_005649104.1| - 0.0021 18.5 0.0 0.0058 17.1 0.0 1.8 2 0 0 2 2 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|385776536|ref|YP_005649104.1| - 0.0046 16.8 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.16 gi|385776536|ref|YP_005649104.1| - 0.0061 16.1 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF2115 PF09888.4 gi|385776536|ref|YP_005649104.1| - 0.0069 16.5 3.0 0.0069 16.5 2.0 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2115) ApbA PF02558.11 gi|385776536|ref|YP_005649104.1| - 0.0072 15.7 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|385776536|ref|YP_005649104.1| - 0.016 14.5 0.0 0.042 13.2 0.0 1.7 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|385776536|ref|YP_005649104.1| - 0.016 14.9 0.0 0.044 13.5 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.14 gi|385776536|ref|YP_005649104.1| - 0.018 14.0 0.0 0.044 12.8 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.12 gi|385776536|ref|YP_005649104.1| - 0.069 12.2 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Thi4 family NAD_binding_10 PF13460.1 gi|385776536|ref|YP_005649104.1| - 0.085 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding adh_short PF00106.20 gi|385776536|ref|YP_005649104.1| - 0.11 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|385776536|ref|YP_005649104.1| - 0.11 12.8 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|385776536|ref|YP_005649104.1| - 0.16 11.6 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 KR domain NAD_binding_7 PF13241.1 gi|385776537|ref|YP_005649105.1| - 1.2e-26 92.9 0.2 2.6e-26 91.8 0.1 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|385776537|ref|YP_005649105.1| - 6.9e-06 26.0 0.9 3.1e-05 23.9 0.1 2.1 1 1 1 2 2 2 1 TrkA-N domain Pyr_redox PF00070.22 gi|385776537|ref|YP_005649105.1| - 0.00098 19.4 0.0 0.0024 18.2 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|385776537|ref|YP_005649105.1| - 0.0013 18.5 0.3 0.042 13.7 0.1 2.3 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Shikimate_DH PF01488.15 gi|385776537|ref|YP_005649105.1| - 0.0036 17.3 0.7 0.0098 15.9 0.1 2.0 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|385776537|ref|YP_005649105.1| - 0.027 13.3 0.0 0.046 12.5 0.0 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|385776537|ref|YP_005649105.1| - 0.042 13.4 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385776537|ref|YP_005649105.1| - 0.049 12.7 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TFIIE_alpha PF02002.12 gi|385776537|ref|YP_005649105.1| - 0.086 12.3 0.8 0.13 11.8 0.1 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit Pyr_redox_2 PF07992.9 gi|385776537|ref|YP_005649105.1| - 0.088 12.6 0.4 0.21 11.4 0.2 1.7 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|385776537|ref|YP_005649105.1| - 0.091 12.3 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|385776537|ref|YP_005649105.1| - 0.12 11.8 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|385776537|ref|YP_005649105.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain FAD_binding_2 PF00890.19 gi|385776537|ref|YP_005649105.1| - 0.14 10.9 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|385776537|ref|YP_005649105.1| - 0.15 11.4 0.5 1.6 8.0 0.2 2.2 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|385776537|ref|YP_005649105.1| - 0.17 10.7 0.2 0.24 10.2 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase ThiF PF00899.16 gi|385776537|ref|YP_005649105.1| - 0.65 9.8 4.3 4.6 7.0 0.2 2.3 1 1 1 2 2 2 0 ThiF family XPG_I PF00867.13 gi|385776538|ref|YP_005649106.1| - 6.1e-25 87.1 0.0 1.2e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|385776538|ref|YP_005649106.1| - 7.9e-11 42.1 0.0 1.8e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|385776538|ref|YP_005649106.1| - 8.2e-05 22.7 0.1 8.2e-05 22.7 0.1 2.0 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF2458 PF10454.4 gi|385776538|ref|YP_005649106.1| - 0.00013 21.9 1.6 0.001 18.9 0.2 2.5 2 1 1 3 3 3 1 Protein of unknown function (DUF2458) PIN_2 PF10130.4 gi|385776538|ref|YP_005649106.1| - 0.0033 17.4 0.6 0.15 12.0 0.1 2.3 2 0 0 2 2 2 1 PIN domain DUF2150 PF09920.4 gi|385776538|ref|YP_005649106.1| - 0.26 10.8 2.5 0.13 11.8 0.2 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) Ribosomal_S13 PF00416.17 gi|385776538|ref|YP_005649106.1| - 0.34 11.3 4.2 0.29 11.6 0.5 2.6 2 2 1 3 3 3 0 Ribosomal protein S13/S18 Attachment_P66 PF11263.3 gi|385776539|ref|YP_005649107.1| - 0.015 14.3 0.1 0.016 14.2 0.0 1.0 1 0 0 1 1 1 0 Borrelia burgdorferi attachment protein P66 La PF05383.12 gi|385776539|ref|YP_005649107.1| - 0.024 14.4 0.1 0.046 13.5 0.0 1.6 1 1 0 1 1 1 0 La domain p25-alpha PF05517.7 gi|385776539|ref|YP_005649107.1| - 0.035 14.3 0.1 0.039 14.1 0.0 1.1 1 0 0 1 1 1 0 p25-alpha AAA PF00004.24 gi|385776540|ref|YP_005649108.1| - 1.2e-97 323.2 0.0 3.4e-48 163.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|385776540|ref|YP_005649108.1| - 2.6e-31 107.3 2.7 1e-30 105.5 1.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|385776540|ref|YP_005649108.1| - 5.3e-16 58.3 0.0 6.4e-08 31.9 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|385776540|ref|YP_005649108.1| - 6.7e-15 54.4 1.1 6.7e-15 54.4 0.8 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|385776540|ref|YP_005649108.1| - 1e-13 51.5 0.1 3.2e-06 27.1 0.0 3.3 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|385776540|ref|YP_005649108.1| - 4.5e-13 49.4 0.3 0.00014 22.0 0.0 4.4 3 2 1 4 4 3 2 AAA domain AAA_5 PF07728.9 gi|385776540|ref|YP_005649108.1| - 1.3e-12 47.6 1.2 0.00019 21.1 0.1 4.8 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|385776540|ref|YP_005649108.1| - 4.5e-12 46.8 0.1 1.3e-05 26.0 0.0 3.2 2 1 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|385776540|ref|YP_005649108.1| - 3.5e-11 42.5 0.5 0.00042 19.4 0.0 3.5 3 1 0 3 3 3 2 Zeta toxin AAA_16 PF13191.1 gi|385776540|ref|YP_005649108.1| - 1.1e-10 41.7 0.0 0.00014 21.9 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|385776540|ref|YP_005649108.1| - 1.4e-10 41.2 0.0 0.0009 19.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|385776540|ref|YP_005649108.1| - 1.6e-10 40.3 1.4 0.00011 21.0 0.0 2.9 3 0 0 3 3 3 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|385776540|ref|YP_005649108.1| - 2.4e-10 40.1 0.0 0.00069 19.0 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_14 PF13173.1 gi|385776540|ref|YP_005649108.1| - 1.6e-09 37.7 0.0 0.0009 19.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|385776540|ref|YP_005649108.1| - 1.4e-08 35.1 0.1 0.0032 17.7 0.0 3.2 3 0 0 3 3 2 2 AAA domain Arch_ATPase PF01637.13 gi|385776540|ref|YP_005649108.1| - 5.8e-08 32.7 0.5 0.0023 17.6 0.0 4.2 2 2 2 4 4 4 1 Archaeal ATPase AAA_28 PF13521.1 gi|385776540|ref|YP_005649108.1| - 2e-07 31.1 0.0 0.017 15.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|385776540|ref|YP_005649108.1| - 2.2e-07 30.2 0.7 0.0072 15.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|385776540|ref|YP_005649108.1| - 8.2e-07 29.1 0.0 0.018 15.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|385776540|ref|YP_005649108.1| - 1.2e-06 28.1 0.0 0.17 11.3 0.0 4.3 4 1 0 4 4 3 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|385776540|ref|YP_005649108.1| - 5.3e-06 26.0 3.2 0.049 13.3 0.2 3.1 3 0 0 3 3 2 2 Part of AAA domain AAA_3 PF07726.6 gi|385776540|ref|YP_005649108.1| - 6.7e-06 25.7 0.0 0.047 13.2 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|385776540|ref|YP_005649108.1| - 8.3e-06 25.3 7.7 0.084 12.2 0.4 4.0 2 2 1 3 3 3 2 AAA domain ABC_tran PF00005.22 gi|385776540|ref|YP_005649108.1| - 8.8e-06 26.0 0.0 0.058 13.6 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|385776540|ref|YP_005649108.1| - 1.1e-05 25.4 0.0 0.15 12.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|385776540|ref|YP_005649108.1| - 1.2e-05 25.0 0.4 0.26 10.9 0.0 3.2 4 0 0 4 4 3 2 NACHT domain AAA_24 PF13479.1 gi|385776540|ref|YP_005649108.1| - 1.5e-05 24.6 1.7 0.053 13.0 0.1 2.5 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|385776540|ref|YP_005649108.1| - 3.4e-05 22.8 0.7 0.12 11.1 0.0 2.9 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|385776540|ref|YP_005649108.1| - 8.5e-05 21.5 0.0 0.11 11.3 0.0 2.8 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|385776540|ref|YP_005649108.1| - 0.00017 21.2 0.0 0.039 13.5 0.0 3.0 2 2 0 2 2 2 1 Bacterial dnaA protein NB-ARC PF00931.17 gi|385776540|ref|YP_005649108.1| - 0.00019 20.3 0.0 0.1 11.4 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain KaiC PF06745.8 gi|385776540|ref|YP_005649108.1| - 0.00024 20.2 3.5 0.23 10.5 0.0 4.1 4 1 1 5 5 4 1 KaiC PhoH PF02562.11 gi|385776540|ref|YP_005649108.1| - 0.00062 19.0 0.2 0.2 10.8 0.0 2.6 2 0 0 2 2 2 1 PhoH-like protein NTPase_1 PF03266.10 gi|385776540|ref|YP_005649108.1| - 0.001 18.8 4.1 2.7 7.6 0.0 4.7 3 2 1 4 4 4 0 NTPase UPF0079 PF02367.12 gi|385776540|ref|YP_005649108.1| - 0.001 18.7 0.0 2 8.0 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|385776540|ref|YP_005649108.1| - 0.0014 18.1 0.3 1.6 8.0 0.0 3.1 2 2 0 3 3 3 1 AAA-like domain ATP-synt_ab PF00006.20 gi|385776540|ref|YP_005649108.1| - 0.0015 18.0 0.0 0.46 9.9 0.0 2.6 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|385776540|ref|YP_005649108.1| - 0.002 16.9 0.0 0.99 8.1 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase Vps4_C PF09336.5 gi|385776540|ref|YP_005649108.1| - 0.0021 17.9 0.8 0.056 13.3 0.1 3.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_11 PF13086.1 gi|385776540|ref|YP_005649108.1| - 0.0077 15.8 0.1 1.6 8.2 0.1 2.6 2 1 0 2 2 2 1 AAA domain SKI PF01202.17 gi|385776540|ref|YP_005649108.1| - 0.0081 16.0 0.0 5.8 6.7 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.16 gi|385776540|ref|YP_005649108.1| - 0.0085 15.5 0.1 12 5.2 0.0 3.7 3 1 1 4 4 3 0 Guanylate kinase Viral_helicase1 PF01443.13 gi|385776540|ref|YP_005649108.1| - 0.018 14.5 0.0 1.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|385776540|ref|YP_005649108.1| - 0.023 13.6 0.0 4.5 6.1 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.1 gi|385776540|ref|YP_005649108.1| - 0.023 15.0 0.1 10 6.3 0.0 2.9 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|385776540|ref|YP_005649108.1| - 0.024 14.4 0.0 2.6 7.8 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|385776540|ref|YP_005649108.1| - 0.028 13.6 0.1 1.1 8.3 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase PduV-EutP PF10662.4 gi|385776540|ref|YP_005649108.1| - 0.028 13.8 0.0 8.6 5.8 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation UFD1 PF03152.9 gi|385776540|ref|YP_005649108.1| - 0.032 13.3 0.0 0.069 12.2 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 T2SE PF00437.15 gi|385776540|ref|YP_005649108.1| - 0.036 12.9 0.0 5.7 5.7 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|385776540|ref|YP_005649108.1| - 0.039 13.1 0.0 8.5 5.4 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_29 PF13555.1 gi|385776540|ref|YP_005649108.1| - 0.054 13.0 0.0 12 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SPT16 PF08644.6 gi|385776540|ref|YP_005649108.1| - 0.058 13.2 2.6 0.55 10.0 0.1 2.5 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) KAP_NTPase PF07693.9 gi|385776540|ref|YP_005649108.1| - 0.063 12.2 0.0 27 3.5 0.0 3.1 2 1 0 3 3 3 0 KAP family P-loop domain vWF_A PF12450.3 gi|385776540|ref|YP_005649108.1| - 0.068 12.8 0.0 8.3 6.2 0.0 2.4 2 0 0 2 2 2 0 von Willebrand factor MMR_HSR1 PF01926.18 gi|385776540|ref|YP_005649108.1| - 0.069 13.1 0.0 4.7 7.2 0.0 3.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|385776540|ref|YP_005649108.1| - 0.15 11.6 0.1 7.9 6.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain EF1_GNE PF00736.14 gi|385776541|ref|YP_005649109.1| - 9.2e-22 76.5 0.1 9.9e-22 76.4 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|385776542|ref|YP_005649110.1| - 2.5e-21 75.4 12.2 1.1e-11 44.5 4.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|385776542|ref|YP_005649110.1| - 7.1e-07 28.8 4.8 2.5e-05 23.8 0.7 2.1 1 1 1 2 2 2 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|385776542|ref|YP_005649110.1| - 1.7e-06 27.0 11.3 0.00092 18.3 2.9 3.0 2 1 1 3 3 3 3 zinc-ribbon domain DZR PF12773.2 gi|385776542|ref|YP_005649110.1| - 1.1e-05 25.1 6.9 0.00013 21.7 1.2 2.3 1 1 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|385776542|ref|YP_005649110.1| - 3.3e-05 23.1 11.7 0.015 14.5 3.2 3.1 1 1 1 2 2 2 2 TFIIB zinc-binding zf-C2HC5 PF06221.8 gi|385776542|ref|YP_005649110.1| - 0.0011 18.6 8.2 0.0019 17.9 1.0 2.1 1 1 1 2 2 2 1 Putative zinc finger motif, C2HC5-type zinc_ribbon_2 PF13240.1 gi|385776542|ref|YP_005649110.1| - 0.0017 17.7 14.2 0.65 9.5 0.4 3.2 2 1 1 3 3 3 2 zinc-ribbon domain DUF35_N PF12172.3 gi|385776542|ref|YP_005649110.1| - 0.0019 18.0 5.0 0.17 11.8 1.1 3.1 2 1 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.1 gi|385776542|ref|YP_005649110.1| - 0.0023 17.5 6.4 0.49 10.1 0.0 3.2 3 0 0 3 3 3 1 zinc-ribbon domain DUF2296 PF10058.4 gi|385776542|ref|YP_005649110.1| - 0.0032 17.1 10.5 0.43 10.3 0.5 3.0 2 1 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_5 PF13719.1 gi|385776542|ref|YP_005649110.1| - 0.0049 16.4 7.3 0.49 10.0 0.0 3.2 3 0 0 3 3 3 1 zinc-ribbon domain ADK_lid PF05191.9 gi|385776542|ref|YP_005649110.1| - 0.0064 16.1 8.6 0.96 9.1 3.1 3.1 2 1 0 2 2 2 1 Adenylate kinase, active site lid zf-DHHC PF01529.15 gi|385776542|ref|YP_005649110.1| - 0.01 15.2 1.1 0.013 14.8 0.7 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase zf-B_box PF00643.19 gi|385776542|ref|YP_005649110.1| - 0.011 15.6 6.6 0.093 12.6 0.9 2.7 2 1 0 2 2 2 0 B-box zinc finger HypA PF01155.14 gi|385776542|ref|YP_005649110.1| - 0.012 15.2 4.0 0.016 14.8 0.2 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|385776542|ref|YP_005649110.1| - 0.014 15.1 7.3 0.79 9.6 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Rubredoxin PF00301.15 gi|385776542|ref|YP_005649110.1| - 0.019 14.8 6.0 4.6 7.1 0.1 3.1 2 1 0 2 2 2 0 Rubredoxin zf-NADH-PPase PF09297.6 gi|385776542|ref|YP_005649110.1| - 0.023 14.2 6.4 0.041 13.3 0.7 2.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TerY-C PF15616.1 gi|385776542|ref|YP_005649110.1| - 0.027 14.4 5.8 0.25 11.2 0.4 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain Auto_anti-p27 PF06677.7 gi|385776542|ref|YP_005649110.1| - 0.027 14.2 10.6 0.087 12.5 1.9 2.4 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|385776542|ref|YP_005649110.1| - 0.031 13.9 9.7 7.2 6.3 0.1 3.3 2 1 0 2 2 2 0 Nudix N-terminal NinF PF05810.7 gi|385776542|ref|YP_005649110.1| - 0.031 14.0 0.3 0.031 14.0 0.2 1.9 1 1 1 2 2 2 0 NinF protein IBR PF01485.16 gi|385776542|ref|YP_005649110.1| - 0.038 13.8 6.9 0.63 9.9 4.8 2.0 1 1 0 1 1 1 0 IBR domain Acetone_carb_G PF08882.6 gi|385776542|ref|YP_005649110.1| - 0.054 13.5 6.9 0.95 9.5 0.9 2.4 1 1 0 2 2 2 0 Acetone carboxylase gamma subunit zf-ISL3 PF14690.1 gi|385776542|ref|YP_005649110.1| - 0.062 13.3 12.8 0.25 11.3 0.5 3.2 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.4 gi|385776542|ref|YP_005649110.1| - 0.062 13.1 6.5 0.9 9.4 0.8 3.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain UPF0547 PF10571.4 gi|385776542|ref|YP_005649110.1| - 0.067 12.9 14.0 0.53 10.0 6.3 3.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 PolC_DP2 PF03833.8 gi|385776542|ref|YP_005649110.1| - 0.073 10.7 2.3 0.082 10.5 1.6 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Sgf11 PF08209.6 gi|385776542|ref|YP_005649110.1| - 0.078 12.3 8.5 1.6 8.0 0.1 3.2 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) RRN7 PF11781.3 gi|385776542|ref|YP_005649110.1| - 0.085 12.3 6.6 1.5 8.4 0.2 3.1 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF164 PF02591.10 gi|385776542|ref|YP_005649110.1| - 0.11 12.3 7.7 8.4 6.3 0.1 3.1 3 0 0 3 3 3 0 Putative zinc ribbon domain zf-HIT PF04438.11 gi|385776542|ref|YP_005649110.1| - 0.11 12.1 8.1 1.1 8.9 0.6 3.1 3 0 0 3 3 3 0 HIT zinc finger Zn_ribbon_recom PF13408.1 gi|385776542|ref|YP_005649110.1| - 0.14 12.4 6.9 0.13 12.4 2.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-CHY PF05495.7 gi|385776542|ref|YP_005649110.1| - 0.16 12.1 4.7 0.33 11.1 0.9 2.0 1 1 1 2 2 2 0 CHY zinc finger zf-C3HC4_4 PF15227.1 gi|385776542|ref|YP_005649110.1| - 0.17 11.7 5.9 0.66 9.8 0.6 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING PHD PF00628.24 gi|385776542|ref|YP_005649110.1| - 0.18 11.5 8.7 4.7 6.9 0.3 2.9 1 1 1 2 2 2 0 PHD-finger CK_II_beta PF01214.13 gi|385776542|ref|YP_005649110.1| - 0.19 11.1 3.9 0.11 11.9 0.5 1.8 1 1 1 2 2 2 0 Casein kinase II regulatory subunit zf-C2H2 PF00096.21 gi|385776542|ref|YP_005649110.1| - 0.19 12.1 10.0 1.5 9.3 0.3 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type NOB1_Zn_bind PF08772.6 gi|385776542|ref|YP_005649110.1| - 0.23 11.3 7.2 0.077 12.8 0.7 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like PhnA_Zn_Ribbon PF08274.7 gi|385776542|ref|YP_005649110.1| - 0.24 11.2 7.5 4 7.2 0.1 3.1 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|385776542|ref|YP_005649110.1| - 0.25 10.8 8.6 1.5 8.3 0.2 3.2 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger C1_1 PF00130.17 gi|385776542|ref|YP_005649110.1| - 0.26 11.0 5.2 0.13 11.9 1.3 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Spt4 PF06093.8 gi|385776542|ref|YP_005649110.1| - 0.31 10.9 4.6 0.41 10.5 0.4 2.1 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger Ribosomal_L32p PF01783.18 gi|385776542|ref|YP_005649110.1| - 0.32 11.1 7.7 4.4 7.5 2.3 3.0 1 1 1 2 2 2 0 Ribosomal L32p protein family Zn-ribbon_8 PF09723.5 gi|385776542|ref|YP_005649110.1| - 0.39 10.6 11.2 2.7 8.0 3.6 2.8 1 1 2 3 3 3 0 Zinc ribbon domain zf-Mss51 PF13824.1 gi|385776542|ref|YP_005649110.1| - 0.44 10.4 8.9 10 6.0 3.3 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 LIM PF00412.17 gi|385776542|ref|YP_005649110.1| - 0.49 10.5 4.8 16 5.6 3.3 2.1 1 1 0 1 1 1 0 LIM domain zf-MYND PF01753.13 gi|385776542|ref|YP_005649110.1| - 0.56 10.1 5.5 0.72 9.7 0.4 2.1 2 0 0 2 2 2 0 MYND finger zf-H2C2_2 PF13465.1 gi|385776542|ref|YP_005649110.1| - 0.64 10.4 10.5 1.5 9.2 0.7 3.1 2 1 1 3 3 3 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|385776542|ref|YP_005649110.1| - 0.69 9.9 12.9 4.5 7.3 2.0 3.4 2 2 1 3 3 3 0 zinc-finger Prok-RING_1 PF14446.1 gi|385776542|ref|YP_005649110.1| - 0.79 9.5 6.3 0.37 10.5 0.4 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-AN1 PF01428.11 gi|385776542|ref|YP_005649110.1| - 1.1 9.1 9.3 15 5.5 2.9 3.1 1 1 2 3 3 3 0 AN1-like Zinc finger YhfH PF14149.1 gi|385776542|ref|YP_005649110.1| - 1.2 8.9 8.3 8.3 6.2 0.3 3.2 2 1 1 3 3 3 0 YhfH-like protein XPA_N PF01286.13 gi|385776542|ref|YP_005649110.1| - 1.6 8.4 0.0 1.6 8.4 0.0 2.8 4 0 0 4 4 3 0 XPA protein N-terminal zf-C2H2_4 PF13894.1 gi|385776542|ref|YP_005649110.1| - 1.7 9.1 10.8 4.7 7.7 0.3 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|385776542|ref|YP_005649110.1| - 1.8 8.3 5.9 28 4.5 4.2 2.3 1 1 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|385776542|ref|YP_005649110.1| - 2.1 8.2 14.4 7.3 6.4 1.2 3.2 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-RING_5 PF14634.1 gi|385776542|ref|YP_005649110.1| - 2.4 7.9 8.3 4.2 7.1 1.1 1.9 1 1 1 2 2 2 0 zinc-RING finger domain zf-dskA_traR PF01258.12 gi|385776542|ref|YP_005649110.1| - 2.7 7.7 9.5 2.9 7.7 0.2 3.2 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-RING_4 PF14570.1 gi|385776542|ref|YP_005649110.1| - 3.1 7.4 7.6 3.3 7.3 1.0 2.3 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain RNHCP PF12647.2 gi|385776542|ref|YP_005649110.1| - 3.4 7.5 6.6 1.4 8.7 1.6 2.0 1 1 1 2 2 2 0 RNHCP domain C1_3 PF07649.7 gi|385776542|ref|YP_005649110.1| - 3.7 7.6 10.1 5 7.2 0.5 2.6 2 1 0 2 2 2 0 C1-like domain TFIIS_C PF01096.13 gi|385776542|ref|YP_005649110.1| - 3.9 7.1 8.2 21 4.8 0.6 3.2 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-C3HC4_3 PF13920.1 gi|385776542|ref|YP_005649110.1| - 4.8 6.9 7.7 71 3.1 5.3 2.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Elf1 PF05129.8 gi|385776542|ref|YP_005649110.1| - 4.9 6.9 6.2 2.1 8.0 1.6 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like NMD3 PF04981.8 gi|385776542|ref|YP_005649110.1| - 5.5 6.0 7.0 11 5.0 0.0 2.0 1 1 0 2 2 2 0 NMD3 family zf-FPG_IleRS PF06827.9 gi|385776542|ref|YP_005649110.1| - 5.9 6.6 11.3 5 6.8 1.5 2.9 1 1 2 3 3 3 0 Zinc finger found in FPG and IleRS RNA_POL_M_15KD PF02150.11 gi|385776542|ref|YP_005649110.1| - 6.4 6.5 8.4 13 5.5 1.2 2.8 1 1 2 3 3 3 0 RNA polymerases M/15 Kd subunit Ogr_Delta PF04606.7 gi|385776542|ref|YP_005649110.1| - 6.9 6.4 9.2 4.9 6.8 0.2 2.9 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger FYVE PF01363.16 gi|385776542|ref|YP_005649110.1| - 7.9 6.4 8.4 88 3.1 5.8 2.2 1 1 0 1 1 1 0 FYVE zinc finger DUF2072 PF09845.4 gi|385776542|ref|YP_005649110.1| - 9.1 6.2 8.1 1.2 9.0 0.9 2.1 1 1 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) PTH2 PF01981.11 gi|385776543|ref|YP_005649111.1| - 2.9e-45 152.6 0.1 3.3e-45 152.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TruD PF01142.13 gi|385776544|ref|YP_005649112.1| - 1.4e-43 149.0 0.1 6.2e-34 117.2 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase D (TruD) tRNA-synt_2 PF00152.15 gi|385776545|ref|YP_005649113.1| - 4.9e-93 311.5 0.1 6.8e-93 311.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|385776545|ref|YP_005649113.1| - 2.3e-13 49.7 0.3 5.5e-13 48.5 0.2 1.7 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|385776545|ref|YP_005649113.1| - 0.029 13.5 0.2 2.8 7.0 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) KH_5 PF13184.1 gi|385776546|ref|YP_005649114.1| - 7.6e-11 41.6 0.1 1.3e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 NusA-like KH domain Ribosomal_L40e PF01020.12 gi|385776547|ref|YP_005649115.1| - 1.9e-08 33.7 5.0 2.2e-08 33.5 3.5 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DUF35_N PF12172.3 gi|385776547|ref|YP_005649115.1| - 0.0015 18.3 0.5 0.002 17.9 0.3 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|385776547|ref|YP_005649115.1| - 0.0037 16.9 0.3 0.0043 16.7 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|385776547|ref|YP_005649115.1| - 0.0049 16.0 0.6 0.0066 15.6 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385776547|ref|YP_005649115.1| - 0.0051 16.2 1.0 0.0071 15.7 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|385776547|ref|YP_005649115.1| - 0.0068 16.1 0.9 0.0084 15.9 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|385776547|ref|YP_005649115.1| - 0.016 14.2 3.1 0.022 13.8 2.2 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-DHHC PF01529.15 gi|385776547|ref|YP_005649115.1| - 0.024 14.0 1.6 0.024 14.0 1.1 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DnaJ_CXXCXGXG PF00684.14 gi|385776547|ref|YP_005649115.1| - 0.035 14.1 0.8 0.042 13.9 0.5 1.1 1 0 0 1 1 1 0 DnaJ central domain zf-C2H2_3 PF13878.1 gi|385776547|ref|YP_005649115.1| - 0.049 13.2 2.6 0.3 10.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Paired_CXXCH_1 PF09699.5 gi|385776547|ref|YP_005649115.1| - 0.078 12.5 1.6 0.096 12.2 0.1 1.8 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) zf-IS66 PF13005.2 gi|385776547|ref|YP_005649115.1| - 0.1 12.5 2.1 0.42 10.6 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Spt4 PF06093.8 gi|385776547|ref|YP_005649115.1| - 0.21 11.4 1.3 0.23 11.3 0.9 1.2 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-tcix PF14952.1 gi|385776547|ref|YP_005649115.1| - 0.37 10.1 8.3 1.1 8.5 5.8 1.7 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Cytochrome_C7 PF14522.1 gi|385776547|ref|YP_005649115.1| - 0.51 10.0 3.6 2.3 7.9 2.5 1.9 1 1 0 1 1 1 0 Cytochrome c7 Haem_bd PF14376.1 gi|385776547|ref|YP_005649115.1| - 0.53 9.9 2.9 1.8 8.2 2.1 1.7 1 1 1 2 2 2 0 Haem-binding domain RNA_POL_M_15KD PF02150.11 gi|385776547|ref|YP_005649115.1| - 0.56 9.9 3.6 1.1 9.0 0.0 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|385776547|ref|YP_005649115.1| - 0.96 8.9 7.7 0.29 10.6 2.5 2.2 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|385776547|ref|YP_005649115.1| - 1.1 9.2 4.0 7.3 6.6 2.7 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Mu-like_Com PF10122.4 gi|385776547|ref|YP_005649115.1| - 1.2 8.2 9.0 0.21 10.6 0.3 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF2204 PF09970.4 gi|385776548|ref|YP_005649116.1| - 2.2e-67 226.0 2.4 2.5e-67 225.8 1.7 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) TPP_enzyme_M PF00205.17 gi|385776549|ref|YP_005649117.1| - 1.1e-34 119.0 0.2 6.9e-34 116.5 0.0 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.13 gi|385776549|ref|YP_005649117.1| - 1.1e-22 80.3 0.0 1.7e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PNTB PF02233.11 gi|385776549|ref|YP_005649117.1| - 0.0039 16.0 0.0 0.0068 15.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit DUF4133 PF13571.1 gi|385776550|ref|YP_005649118.1| - 0.054 13.7 0.6 0.054 13.7 0.4 2.1 2 2 0 2 2 2 0 Domain of unknown function (DUF4133) ABC_tran PF00005.22 gi|385776552|ref|YP_005649120.1| - 5.3e-33 114.2 0.1 2.5e-17 63.4 0.0 3.2 2 1 1 3 3 3 3 ABC transporter AAA_21 PF13304.1 gi|385776552|ref|YP_005649120.1| - 2.6e-17 63.7 17.2 2.4e-05 24.4 0.0 4.7 2 2 2 5 5 5 4 AAA domain AAA_29 PF13555.1 gi|385776552|ref|YP_005649120.1| - 8.4e-09 34.8 0.1 0.0029 17.0 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain cobW PF02492.14 gi|385776552|ref|YP_005649120.1| - 8.5e-07 28.5 0.1 0.0094 15.4 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|385776552|ref|YP_005649120.1| - 1.7e-06 28.1 0.0 0.007 16.3 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|385776552|ref|YP_005649120.1| - 3.7e-06 26.3 4.9 0.44 9.7 0.9 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Pox_A32 PF04665.7 gi|385776552|ref|YP_005649120.1| - 5.4e-06 25.8 0.1 0.024 13.9 0.1 2.6 2 0 0 2 2 2 2 Poxvirus A32 protein NB-ARC PF00931.17 gi|385776552|ref|YP_005649120.1| - 6.2e-06 25.2 0.1 0.032 13.0 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain MobB PF03205.9 gi|385776552|ref|YP_005649120.1| - 6.4e-06 25.9 0.1 0.03 14.0 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|385776552|ref|YP_005649120.1| - 7e-06 26.5 0.1 0.11 13.0 0.0 2.5 2 0 0 2 2 2 2 Miro-like protein AAA PF00004.24 gi|385776552|ref|YP_005649120.1| - 1.1e-05 25.6 0.6 0.0047 17.1 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|385776552|ref|YP_005649120.1| - 1.9e-05 24.5 1.1 0.029 14.2 0.0 3.2 2 1 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|385776552|ref|YP_005649120.1| - 3.2e-05 24.0 1.0 0.0091 16.1 0.0 2.8 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|385776552|ref|YP_005649120.1| - 3.6e-05 23.4 3.4 0.012 15.3 0.0 2.7 3 1 0 3 3 2 2 NACHT domain DUF3584 PF12128.3 gi|385776552|ref|YP_005649120.1| - 0.0002 18.9 0.9 0.01 13.2 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3584) SRP54 PF00448.17 gi|385776552|ref|YP_005649120.1| - 0.00034 20.1 0.0 0.32 10.3 0.0 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|385776552|ref|YP_005649120.1| - 0.00051 19.9 0.2 1.2 8.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.13 gi|385776552|ref|YP_005649120.1| - 0.00052 19.5 0.1 0.11 11.9 0.0 2.5 3 0 0 3 3 2 1 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|385776552|ref|YP_005649120.1| - 0.00055 19.5 0.2 0.21 11.2 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|385776552|ref|YP_005649120.1| - 0.00063 20.1 10.5 0.032 14.5 0.0 2.9 1 1 1 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|385776552|ref|YP_005649120.1| - 0.00083 19.2 0.5 1.4 8.9 0.2 2.6 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|385776552|ref|YP_005649120.1| - 0.00088 18.7 0.0 0.4 10.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|385776552|ref|YP_005649120.1| - 0.00089 18.9 0.0 1.1 8.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain G-alpha PF00503.15 gi|385776552|ref|YP_005649120.1| - 0.0012 17.6 0.1 0.14 10.7 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit AAA_15 PF13175.1 gi|385776552|ref|YP_005649120.1| - 0.0015 17.7 13.9 0.26 10.2 3.3 3.9 2 1 1 4 4 4 2 AAA ATPase domain NTPase_1 PF03266.10 gi|385776552|ref|YP_005649120.1| - 0.0016 18.1 0.1 3.3 7.3 0.0 3.1 3 0 0 3 3 3 0 NTPase Viral_helicase1 PF01443.13 gi|385776552|ref|YP_005649120.1| - 0.0022 17.5 0.0 0.64 9.4 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Arch_ATPase PF01637.13 gi|385776552|ref|YP_005649120.1| - 0.0027 17.4 2.1 0.19 11.3 0.0 2.7 3 0 0 3 3 2 1 Archaeal ATPase DUF258 PF03193.11 gi|385776552|ref|YP_005649120.1| - 0.0035 16.5 0.1 0.8 8.8 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|385776552|ref|YP_005649120.1| - 0.0036 17.6 3.0 0.35 11.1 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|385776552|ref|YP_005649120.1| - 0.0039 16.9 0.1 0.53 10.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Arf PF00025.16 gi|385776552|ref|YP_005649120.1| - 0.0043 16.3 0.4 0.22 10.7 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family T2SE PF00437.15 gi|385776552|ref|YP_005649120.1| - 0.0047 15.8 0.1 0.79 8.5 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|385776552|ref|YP_005649120.1| - 0.0048 16.7 0.0 0.062 13.2 0.0 2.3 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|385776552|ref|YP_005649120.1| - 0.0053 16.2 0.0 0.27 10.6 0.0 2.2 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|385776552|ref|YP_005649120.1| - 0.0054 17.5 4.1 0.72 10.6 0.0 3.1 3 1 0 3 3 2 1 AAA domain PduV-EutP PF10662.4 gi|385776552|ref|YP_005649120.1| - 0.0074 15.7 0.6 4.2 6.8 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation RNA_helicase PF00910.17 gi|385776552|ref|YP_005649120.1| - 0.0089 16.1 2.4 2.8 8.1 0.0 3.5 2 1 1 3 3 3 1 RNA helicase AAA_19 PF13245.1 gi|385776552|ref|YP_005649120.1| - 0.01 15.5 0.0 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_10 PF12846.2 gi|385776552|ref|YP_005649120.1| - 0.012 15.1 1.1 4.3 6.6 0.0 2.7 2 1 0 2 2 2 0 AAA-like domain Septin PF00735.13 gi|385776552|ref|YP_005649120.1| - 0.016 14.2 0.3 3.1 6.7 0.0 2.6 2 1 0 2 2 2 0 Septin AAA_28 PF13521.1 gi|385776552|ref|YP_005649120.1| - 0.016 15.1 0.2 0.71 9.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|385776552|ref|YP_005649120.1| - 0.018 14.1 0.0 6.9 5.7 0.0 2.6 3 0 0 3 3 2 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|385776552|ref|YP_005649120.1| - 0.029 12.9 0.0 0.69 8.4 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_13 PF13166.1 gi|385776552|ref|YP_005649120.1| - 0.034 12.6 4.1 1.9 6.8 0.0 2.7 3 1 0 3 3 3 0 AAA domain ATP_bind_1 PF03029.12 gi|385776552|ref|YP_005649120.1| - 0.044 13.3 0.0 3.7 7.0 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ResIII PF04851.10 gi|385776552|ref|YP_005649120.1| - 0.048 13.4 0.1 7.7 6.3 0.0 2.4 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|385776552|ref|YP_005649120.1| - 0.071 12.6 0.3 4.8 6.7 0.0 2.6 2 1 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|385776552|ref|YP_005649120.1| - 0.082 12.1 0.0 9.7 5.3 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein DAP3 PF10236.4 gi|385776552|ref|YP_005649120.1| - 0.087 11.7 0.1 1.9 7.3 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Epimerase PF01370.16 gi|385776553|ref|YP_005649121.1| - 2.2e-43 148.3 0.1 3e-43 147.9 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385776553|ref|YP_005649121.1| - 5.7e-14 51.6 0.0 6.6e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|385776553|ref|YP_005649121.1| - 3.5e-12 45.6 0.3 4.5e-12 45.2 0.2 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|385776553|ref|YP_005649121.1| - 4e-09 35.7 0.2 4.8e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|385776553|ref|YP_005649121.1| - 5e-09 35.4 1.6 5.8e-08 31.9 1.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|385776553|ref|YP_005649121.1| - 8.9e-05 22.5 0.0 0.00082 19.4 0.0 2.0 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|385776553|ref|YP_005649121.1| - 0.0017 18.3 0.5 0.011 15.6 0.3 2.0 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385776553|ref|YP_005649121.1| - 0.018 14.7 0.0 0.059 13.0 0.0 1.8 2 0 0 2 2 2 0 KR domain DsrD PF08679.6 gi|385776553|ref|YP_005649121.1| - 0.039 13.9 0.5 0.45 10.5 0.0 2.9 3 0 0 3 3 3 0 Dissimilatory sulfite reductase D (DsrD) NmrA PF05368.8 gi|385776553|ref|YP_005649121.1| - 0.044 13.0 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family Epimerase_Csub PF13950.1 gi|385776553|ref|YP_005649121.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Bacteriocin_IIi PF11758.3 gi|385776553|ref|YP_005649121.1| - 0.17 11.4 1.6 1.6 8.4 0.2 2.5 2 0 0 2 2 2 0 Aureocin-like type II bacteriocin UDPG_MGDP_dh_N PF03721.9 gi|385776553|ref|YP_005649121.1| - 0.42 9.9 3.4 3.7 6.8 2.3 2.1 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SRP19 PF01922.12 gi|385776554|ref|YP_005649122.1| - 1.8e-07 31.6 0.3 3.3e-07 30.7 0.2 1.4 1 1 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.17 gi|385776555|ref|YP_005649123.1| - 1.8e-33 115.5 0.5 1.9e-33 115.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Prenyltransf PF01255.14 gi|385776556|ref|YP_005649124.1| - 4.4e-75 251.6 0.5 5.1e-75 251.4 0.4 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Phage_int_SAM_5 PF13102.1 gi|385776556|ref|YP_005649124.1| - 0.033 14.1 0.3 0.056 13.4 0.2 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain Peptidase_M20 PF01546.23 gi|385776557|ref|YP_005649125.1| - 2.8e-22 79.1 0.0 3.4e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385776557|ref|YP_005649125.1| - 1.8e-07 30.9 0.0 3.5e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|385776557|ref|YP_005649125.1| - 0.0055 16.4 0.0 0.0078 15.9 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M28 Aminotran_3 PF00202.16 gi|385776558|ref|YP_005649126.1| - 2.1e-102 342.4 0.0 2.6e-102 342.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|385776558|ref|YP_005649126.1| - 6.8e-05 21.9 0.0 0.00015 20.8 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II RimK PF08443.6 gi|385776559|ref|YP_005649127.1| - 3.7e-46 157.0 0.0 5.8e-46 156.3 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385776559|ref|YP_005649127.1| - 9.2e-13 48.3 0.0 1.3e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|385776559|ref|YP_005649127.1| - 2e-12 46.6 0.0 2.9e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385776559|ref|YP_005649127.1| - 4.8e-07 29.7 0.0 7.6e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|385776559|ref|YP_005649127.1| - 2.8e-05 23.5 0.0 6.8e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|385776559|ref|YP_005649127.1| - 7.4e-05 21.6 0.0 0.00011 21.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.1 gi|385776559|ref|YP_005649127.1| - 7.8e-05 21.9 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|385776559|ref|YP_005649127.1| - 8.1e-05 22.0 0.0 0.0028 17.0 0.0 2.5 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|385776559|ref|YP_005649127.1| - 0.0057 16.0 0.0 0.0099 15.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|385776559|ref|YP_005649127.1| - 0.028 13.9 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_2 PF08442.5 gi|385776559|ref|YP_005649127.1| - 0.094 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain TF_Zn_Ribbon PF08271.7 gi|385776560|ref|YP_005649128.1| - 0.0031 16.7 0.6 0.0049 16.1 0.4 1.3 1 1 0 1 1 1 1 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|385776560|ref|YP_005649128.1| - 0.02 14.5 0.7 0.26 11.0 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|385776560|ref|YP_005649128.1| - 0.026 14.2 0.3 0.045 13.4 0.2 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Lar_restr_allev PF14354.1 gi|385776560|ref|YP_005649128.1| - 0.054 13.8 0.3 0.076 13.3 0.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Rad50_zn_hook PF04423.9 gi|385776560|ref|YP_005649128.1| - 0.059 12.8 0.1 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-ribbon_3 PF13248.1 gi|385776560|ref|YP_005649128.1| - 0.06 12.5 0.2 1.2 8.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385776560|ref|YP_005649128.1| - 0.068 12.6 1.4 3.4 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|385776560|ref|YP_005649128.1| - 0.25 10.8 1.3 1.2 8.6 0.2 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.2 gi|385776560|ref|YP_005649128.1| - 0.27 11.2 2.5 2.3 8.2 1.1 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 AsnC_trans_reg PF01037.16 gi|385776561|ref|YP_005649129.1| - 3.4e-15 55.5 0.1 6.4e-15 54.6 0.1 1.5 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|385776561|ref|YP_005649129.1| - 3.4e-12 45.6 0.1 8e-12 44.4 0.2 1.6 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|385776561|ref|YP_005649129.1| - 1.1e-11 43.8 3.6 1.6e-11 43.4 1.4 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385776561|ref|YP_005649129.1| - 3.6e-06 26.5 3.6 3.8e-06 26.4 0.7 2.2 3 0 0 3 3 3 1 HTH domain NapD PF03927.8 gi|385776561|ref|YP_005649129.1| - 1.5e-05 24.7 0.4 2.6e-05 23.9 0.3 1.4 1 0 0 1 1 1 1 NapD protein HTH_Mga PF08280.6 gi|385776561|ref|YP_005649129.1| - 0.00048 19.8 0.3 0.001 18.7 0.2 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|385776561|ref|YP_005649129.1| - 0.00088 18.9 1.3 0.0013 18.3 0.1 1.9 3 0 0 3 3 2 1 MarR family HTH_DeoR PF08220.7 gi|385776561|ref|YP_005649129.1| - 0.0014 18.1 0.3 0.0022 17.4 0.2 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF2250 PF10007.4 gi|385776561|ref|YP_005649129.1| - 0.0014 18.4 0.2 0.0026 17.6 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|385776561|ref|YP_005649129.1| - 0.0018 17.9 0.3 0.0039 16.8 0.2 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|385776561|ref|YP_005649129.1| - 0.0037 17.0 0.0 0.0061 16.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.5 gi|385776561|ref|YP_005649129.1| - 0.0041 16.8 0.0 0.0063 16.2 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator PAX PF00292.13 gi|385776561|ref|YP_005649129.1| - 0.0076 15.9 0.4 0.1 12.3 0.3 2.2 1 1 0 1 1 1 1 'Paired box' domain HTH_34 PF13601.1 gi|385776561|ref|YP_005649129.1| - 0.0082 16.1 0.1 0.014 15.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|385776561|ref|YP_005649129.1| - 0.0091 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Cullin_Nedd8 PF10557.4 gi|385776561|ref|YP_005649129.1| - 0.021 14.6 1.3 0.033 14.0 0.5 1.7 1 1 0 1 1 1 0 Cullin protein neddylation domain DUF4423 PF14394.1 gi|385776561|ref|YP_005649129.1| - 0.024 14.1 0.3 0.041 13.4 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Stk19 PF10494.4 gi|385776561|ref|YP_005649129.1| - 0.047 13.0 0.1 0.057 12.8 0.1 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 Rio2_N PF09202.6 gi|385776561|ref|YP_005649129.1| - 0.06 13.4 0.2 0.31 11.1 0.1 1.9 1 1 1 2 2 2 0 Rio2, N-terminal HTH_45 PF14947.1 gi|385776561|ref|YP_005649129.1| - 0.061 13.1 0.4 0.14 12.0 0.3 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.15 gi|385776561|ref|YP_005649129.1| - 0.069 12.8 0.1 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family NTase_sub_bind PF08780.6 gi|385776561|ref|YP_005649129.1| - 0.08 12.7 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like TFIIE_alpha PF02002.12 gi|385776561|ref|YP_005649129.1| - 0.097 12.1 0.4 0.17 11.3 0.3 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|385776561|ref|YP_005649129.1| - 0.11 12.5 0.1 0.28 11.3 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_9 PF08221.6 gi|385776561|ref|YP_005649129.1| - 0.12 12.2 0.1 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_12 PF08461.5 gi|385776561|ref|YP_005649129.1| - 0.15 11.8 1.9 0.32 10.7 1.3 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Transcrip_reg PF01709.15 gi|385776561|ref|YP_005649129.1| - 0.23 10.5 1.5 0.38 9.8 1.1 1.4 1 1 0 1 1 1 0 Transcriptional regulator AA_kinase PF00696.23 gi|385776562|ref|YP_005649130.1| - 1.9e-28 99.6 5.2 2.2e-28 99.4 3.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|385776563|ref|YP_005649131.1| - 9.1e-35 119.5 0.0 4.6e-34 117.3 0.0 2.1 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|385776563|ref|YP_005649131.1| - 2.3e-08 34.1 0.0 3.2e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|385776563|ref|YP_005649131.1| - 0.099 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AAA_10 PF12846.2 gi|385776565|ref|YP_005649133.1| - 2.4e-25 89.6 0.9 9.1e-25 87.7 0.1 2.1 2 0 0 2 2 2 1 AAA-like domain DUF87 PF01935.12 gi|385776565|ref|YP_005649133.1| - 2.8e-08 33.8 1.1 2.8e-08 33.8 0.8 3.3 2 2 0 2 2 2 1 Domain of unknown function DUF87 Zot PF05707.7 gi|385776565|ref|YP_005649133.1| - 3.4e-06 26.6 0.1 0.0069 15.8 0.0 2.7 3 0 0 3 3 3 2 Zonular occludens toxin (Zot) DUF853 PF05872.7 gi|385776565|ref|YP_005649133.1| - 8.6e-06 24.3 0.3 0.0043 15.4 0.0 2.6 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|385776565|ref|YP_005649133.1| - 3.6e-05 22.5 0.0 0.0042 15.7 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.9 gi|385776565|ref|YP_005649133.1| - 0.00017 20.3 0.4 0.00067 18.3 0.0 1.9 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.2 gi|385776565|ref|YP_005649133.1| - 0.0003 20.6 0.0 0.00072 19.4 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG FtsK_SpoIIIE PF01580.13 gi|385776565|ref|YP_005649133.1| - 0.0003 20.3 0.0 0.0025 17.3 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|385776565|ref|YP_005649133.1| - 0.004 17.3 3.6 0.64 10.1 0.1 3.7 3 0 0 3 3 3 1 AAA domain SRPRB PF09439.5 gi|385776565|ref|YP_005649133.1| - 0.0072 15.5 1.9 1.1 8.4 0.2 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit ResIII PF04851.10 gi|385776565|ref|YP_005649133.1| - 0.01 15.7 0.0 0.029 14.2 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ABC_tran PF00005.22 gi|385776565|ref|YP_005649133.1| - 0.012 15.9 0.0 0.037 14.3 0.0 1.9 2 0 0 2 2 2 0 ABC transporter T2SE PF00437.15 gi|385776565|ref|YP_005649133.1| - 0.012 14.5 0.1 0.027 13.3 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein DEAD PF00270.24 gi|385776565|ref|YP_005649133.1| - 0.015 14.7 0.6 1.1 8.7 0.0 3.0 3 0 0 3 3 3 0 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|385776565|ref|YP_005649133.1| - 0.019 14.7 0.3 1.2 8.8 0.1 3.1 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|385776565|ref|YP_005649133.1| - 0.026 15.3 2.2 0.087 13.6 0.5 2.8 2 2 0 2 2 2 0 AAA domain Capsule_synth PF05159.9 gi|385776565|ref|YP_005649133.1| - 0.057 12.8 0.1 0.14 11.5 0.1 1.7 1 0 0 1 1 1 0 Capsule polysaccharide biosynthesis protein IstB_IS21 PF01695.12 gi|385776565|ref|YP_005649133.1| - 0.093 12.1 0.8 2.9 7.2 0.1 3.2 4 0 0 4 4 4 0 IstB-like ATP binding protein DsbD PF02683.10 gi|385776565|ref|YP_005649133.1| - 0.12 12.0 4.4 0.088 12.3 1.0 2.1 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region SIS PF01380.17 gi|385776566|ref|YP_005649134.1| - 3.7e-17 62.1 0.0 6.7e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|385776566|ref|YP_005649134.1| - 3.6e-10 39.6 2.6 1.4e-07 31.2 0.3 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.11 gi|385776566|ref|YP_005649134.1| - 0.016 14.1 0.7 0.96 8.2 0.0 2.1 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Transposase_20 PF02371.11 gi|385776567|ref|YP_005649135.1| - 9.1e-25 86.5 0.0 1.3e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 Transposase IS116/IS110/IS902 family DUF454 PF04304.8 gi|385776567|ref|YP_005649135.1| - 0.078 13.0 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF454) zf-C2H2_4 PF13894.1 gi|385776569|ref|YP_005649137.1| - 0.0014 18.7 0.5 0.0028 17.8 0.3 1.5 1 0 0 1 1 1 1 C2H2-type zinc finger zf-Di19 PF05605.7 gi|385776569|ref|YP_005649137.1| - 0.6 10.2 2.9 1.4 9.1 1.9 1.8 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|385776569|ref|YP_005649137.1| - 0.72 10.3 4.2 6.8 7.2 2.9 2.2 1 1 0 1 1 1 0 Zinc finger, C2H2 type Peptidase_M55 PF04951.8 gi|385776570|ref|YP_005649138.1| - 0.15 11.2 0.0 2.3 7.3 0.0 2.0 1 1 1 2 2 2 0 D-aminopeptidase NAD_binding_8 PF13450.1 gi|385776571|ref|YP_005649139.1| - 0.0071 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain YkyA PF10368.4 gi|385776573|ref|YP_005649141.1| - 0.0094 15.3 1.1 0.01 15.1 0.8 1.1 1 0 0 1 1 1 1 Putative cell-wall binding lipoprotein 3HCDH_N PF02737.13 gi|385776573|ref|YP_005649141.1| - 0.12 12.0 0.0 0.13 11.8 0.0 1.0 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CitMHS PF03600.11 gi|385776574|ref|YP_005649142.1| - 1.6e-34 119.0 34.5 4.7e-31 107.6 18.2 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|385776574|ref|YP_005649142.1| - 3.7e-12 45.9 29.0 4.7e-12 45.5 20.1 1.1 1 0 0 1 1 1 1 Arsenical pump membrane protein Arc_PepC_II PF06847.6 gi|385776576|ref|YP_005649144.1| - 5.8e-20 71.5 1.3 9.9e-20 70.7 0.1 2.0 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|385776576|ref|YP_005649144.1| - 7.5e-07 29.2 8.5 7.5e-07 29.2 5.9 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family CbiG_N PF11760.3 gi|385776577|ref|YP_005649145.1| - 4.9e-10 38.9 0.0 8.8e-10 38.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_mid PF11761.3 gi|385776577|ref|YP_005649145.1| - 0.01 16.0 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 Cobalamin biosynthesis central region Peripla_BP_2 PF01497.13 gi|385776578|ref|YP_005649146.1| - 1.3e-18 67.0 0.0 1.6e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HMGL-like PF00682.14 gi|385776580|ref|YP_005649148.1| - 1.1e-48 165.9 0.0 2e-48 165.1 0.0 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|385776580|ref|YP_005649148.1| - 1e-22 80.3 0.1 2.3e-22 79.1 0.1 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain PEP_mutase PF13714.1 gi|385776580|ref|YP_005649148.1| - 0.021 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase UbiA PF01040.13 gi|385776581|ref|YP_005649149.1| - 5.6e-29 101.1 25.6 6.9e-29 100.8 17.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family YrhC PF14143.1 gi|385776581|ref|YP_005649149.1| - 0.69 9.8 3.7 12 5.9 0.1 3.5 3 0 0 3 3 3 0 YrhC-like protein Pyr_redox_2 PF07992.9 gi|385776582|ref|YP_005649150.1| - 6.3e-08 32.7 0.0 5.5e-07 29.6 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385776582|ref|YP_005649150.1| - 3.8e-07 30.4 0.2 0.0096 16.3 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385776582|ref|YP_005649150.1| - 0.0013 18.8 0.2 0.57 10.2 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385776582|ref|YP_005649150.1| - 0.002 17.1 0.1 0.079 11.8 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|385776582|ref|YP_005649150.1| - 0.0024 17.0 0.1 0.0048 16.0 0.1 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|385776582|ref|YP_005649150.1| - 0.0026 16.3 0.3 1.1 7.6 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|385776582|ref|YP_005649150.1| - 0.011 15.6 0.1 0.037 14.0 0.0 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|385776582|ref|YP_005649150.1| - 0.033 13.9 0.0 9.4 5.9 0.0 2.3 1 1 1 2 2 2 0 FAD-NAD(P)-binding GIDA PF01134.17 gi|385776582|ref|YP_005649150.1| - 0.13 11.1 4.3 2.7 6.7 0.2 2.5 2 1 1 3 3 3 0 Glucose inhibited division protein A DUF4401 PF14351.1 gi|385776584|ref|YP_005649152.1| - 0.042 12.8 0.8 0.047 12.6 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) 7TMR-DISM_7TM PF07695.6 gi|385776584|ref|YP_005649152.1| - 0.066 12.8 1.9 0.065 12.8 1.3 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4149 PF13664.1 gi|385776584|ref|YP_005649152.1| - 0.25 11.4 2.4 0.31 11.1 1.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) DUF4418 PF14387.1 gi|385776584|ref|YP_005649152.1| - 0.29 10.8 1.7 0.3 10.8 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) Internalin_N PF12354.3 gi|385776584|ref|YP_005649152.1| - 0.33 10.5 2.1 0.41 10.2 1.1 1.4 1 1 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal Nol1_Nop2_Fmu PF01189.12 gi|385776585|ref|YP_005649153.1| - 7.7e-28 97.6 0.0 1.4e-27 96.8 0.0 1.4 2 0 0 2 2 2 1 NOL1/NOP2/sun family DUF4477 PF14780.1 gi|385776585|ref|YP_005649153.1| - 0.022 14.1 0.3 0.064 12.6 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4477) MTS PF05175.9 gi|385776585|ref|YP_005649153.1| - 0.041 13.2 0.0 0.066 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain T2SE PF00437.15 gi|385776587|ref|YP_005649155.1| - 2.9e-38 131.3 0.0 4.8e-38 130.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|385776587|ref|YP_005649155.1| - 0.0009 19.6 2.6 0.0009 19.6 1.8 2.1 2 1 0 2 2 1 1 AAA domain ABC_tran PF00005.22 gi|385776587|ref|YP_005649155.1| - 0.0011 19.2 0.0 0.0032 17.7 0.0 1.8 2 0 0 2 2 2 1 ABC transporter Pox_A32 PF04665.7 gi|385776587|ref|YP_005649155.1| - 0.0015 17.9 0.0 0.004 16.5 0.0 1.7 1 0 0 1 1 1 1 Poxvirus A32 protein AAA_21 PF13304.1 gi|385776587|ref|YP_005649155.1| - 0.0027 17.7 0.1 0.0027 17.7 0.1 2.6 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|385776587|ref|YP_005649155.1| - 0.0029 17.0 0.0 0.0064 15.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain cobW PF02492.14 gi|385776587|ref|YP_005649155.1| - 0.0034 16.8 0.0 0.006 16.0 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.12 gi|385776587|ref|YP_005649155.1| - 0.0044 16.8 0.3 0.063 13.0 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|385776587|ref|YP_005649155.1| - 0.0057 16.8 0.0 0.026 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|385776587|ref|YP_005649155.1| - 0.0063 16.9 0.0 0.015 15.8 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|385776587|ref|YP_005649155.1| - 0.0067 16.1 0.0 0.026 14.2 0.0 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|385776587|ref|YP_005649155.1| - 0.0096 15.4 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|385776587|ref|YP_005649155.1| - 0.013 14.9 0.6 0.03 13.7 0.4 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|385776587|ref|YP_005649155.1| - 0.019 14.9 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.18 gi|385776587|ref|YP_005649155.1| - 0.036 13.8 0.3 0.28 10.9 0.0 2.2 2 0 0 2 2 2 0 Dynamin family Fructosamin_kin PF03881.9 gi|385776587|ref|YP_005649155.1| - 0.036 13.0 0.0 0.059 12.3 0.0 1.2 1 0 0 1 1 1 0 Fructosamine kinase TrwB_AAD_bind PF10412.4 gi|385776587|ref|YP_005649155.1| - 0.044 12.3 0.2 0.18 10.3 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|385776587|ref|YP_005649155.1| - 0.055 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|385776587|ref|YP_005649155.1| - 0.065 12.8 0.1 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|385776587|ref|YP_005649155.1| - 0.068 13.9 0.0 0.34 11.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|385776587|ref|YP_005649155.1| - 0.074 13.0 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|385776587|ref|YP_005649155.1| - 0.11 11.6 0.0 0.25 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF1628 PF07790.6 gi|385776589|ref|YP_005649157.1| - 0.0005 20.7 0.5 0.00093 19.8 0.2 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) MacB_PCD PF12704.2 gi|385776589|ref|YP_005649157.1| - 0.04 13.4 2.6 0.051 13.1 1.8 1.2 1 1 0 1 1 1 0 MacB-like periplasmic core domain DUF3353 PF11833.3 gi|385776589|ref|YP_005649157.1| - 0.055 12.9 0.5 0.077 12.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF2106 PF09879.4 gi|385776590|ref|YP_005649158.1| - 0.063 12.6 1.6 0.21 10.9 0.2 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2106) CW_binding_1 PF01473.15 gi|385776590|ref|YP_005649158.1| - 0.19 11.8 2.5 0.64 10.2 1.8 1.9 1 0 0 1 1 1 0 Putative cell wall binding repeat DUF3139 PF11337.3 gi|385776590|ref|YP_005649158.1| - 0.28 11.4 7.2 0.1 12.8 3.2 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3139) ODV-E18 PF10717.4 gi|385776590|ref|YP_005649158.1| - 0.59 9.6 3.7 1.3 8.5 2.6 1.5 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 HTH_45 PF14947.1 gi|385776591|ref|YP_005649159.1| - 3.8e-05 23.4 0.0 4.7e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|385776591|ref|YP_005649159.1| - 0.0067 16.3 0.0 0.33 10.8 0.0 2.0 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DUF3116 PF11313.3 gi|385776591|ref|YP_005649159.1| - 0.013 15.1 0.0 0.016 14.8 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) YcfA PF07927.7 gi|385776591|ref|YP_005649159.1| - 0.13 12.2 0.3 0.34 10.8 0.1 1.9 1 1 0 1 1 1 0 YcfA-like protein HhH-GPD PF00730.20 gi|385776592|ref|YP_005649160.1| - 5.1e-20 71.7 0.0 6.9e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|385776592|ref|YP_005649160.1| - 0.00057 19.4 0.1 0.0014 18.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385776592|ref|YP_005649160.1| - 0.069 13.3 0.7 0.41 10.8 0.4 2.2 1 1 1 2 2 2 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|385776592|ref|YP_005649160.1| - 0.12 12.5 10.1 0.22 11.7 7.0 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III ParBc PF02195.13 gi|385776593|ref|YP_005649161.1| - 1.2e-10 41.3 0.1 2.4e-10 40.3 0.0 1.6 2 0 0 2 2 2 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|385776593|ref|YP_005649161.1| - 0.00026 19.6 0.0 0.059 11.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1015) Glyco_tranf_2_3 PF13641.1 gi|385776594|ref|YP_005649162.1| - 3.2e-27 95.8 0.0 4.1e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|385776594|ref|YP_005649162.1| - 9.7e-19 67.8 1.4 9.7e-19 67.8 1.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|385776594|ref|YP_005649162.1| - 1e-17 64.3 0.0 1.7e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|385776594|ref|YP_005649162.1| - 8.7e-14 51.1 0.2 1.2e-12 47.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|385776594|ref|YP_005649162.1| - 5.8e-05 22.3 0.0 8.6e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.9 gi|385776594|ref|YP_005649162.1| - 0.00038 18.9 1.8 0.00058 18.3 1.2 1.3 1 0 0 1 1 1 1 Cellulose synthase Osmo_MPGsynth PF09488.5 gi|385776594|ref|YP_005649162.1| - 0.076 11.6 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) DUF4234 PF14018.1 gi|385776594|ref|YP_005649162.1| - 4.4 7.1 10.1 0.77 9.5 0.2 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4234) DEAD_assoc PF08494.6 gi|385776595|ref|YP_005649163.1| - 7.9e-59 198.5 0.3 2.1e-58 197.1 0.2 1.8 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|385776595|ref|YP_005649163.1| - 4.5e-30 104.3 0.0 7.2e-29 100.4 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385776595|ref|YP_005649163.1| - 3.5e-13 49.2 0.0 1.4e-12 47.2 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385776595|ref|YP_005649163.1| - 1.6e-07 31.3 0.0 1e-06 28.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Transketolase_C PF02780.15 gi|385776595|ref|YP_005649163.1| - 3.8e-05 23.6 0.1 0.0015 18.4 0.0 3.2 3 0 0 3 3 3 1 Transketolase, C-terminal domain AAA_22 PF13401.1 gi|385776595|ref|YP_005649163.1| - 0.002 18.2 0.0 9 6.4 0.0 3.8 3 1 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|385776595|ref|YP_005649163.1| - 0.017 14.5 0.0 3.2 7.0 0.0 2.6 2 0 0 2 2 2 0 AAA-like domain DUF1938 PF09153.5 gi|385776595|ref|YP_005649163.1| - 0.02 14.7 0.4 0.15 11.9 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1938) HrcA_DNA-bdg PF03444.10 gi|385776596|ref|YP_005649164.1| - 1e-35 120.9 1.3 1.9e-35 120.1 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|385776596|ref|YP_005649164.1| - 2.9e-29 100.5 0.4 1.3e-15 56.8 0.2 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|385776596|ref|YP_005649164.1| - 2.7e-08 33.7 0.0 1e-07 31.9 0.0 2.0 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|385776596|ref|YP_005649164.1| - 0.002 17.7 0.3 0.068 12.8 0.0 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385776596|ref|YP_005649164.1| - 0.012 15.3 0.0 0.047 13.3 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|385776596|ref|YP_005649164.1| - 0.017 14.6 0.0 0.037 13.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|385776596|ref|YP_005649164.1| - 0.039 13.4 0.4 2.7 7.5 0.0 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|385776596|ref|YP_005649164.1| - 0.072 12.4 0.2 0.83 9.0 0.0 2.7 2 2 1 3 3 3 0 Sigma-70, region 4 PRC PF05239.11 gi|385776596|ref|YP_005649164.1| - 0.072 12.9 5.2 13 5.7 0.1 3.9 4 0 0 4 4 4 0 PRC-barrel domain Penicillinase_R PF03965.11 gi|385776596|ref|YP_005649164.1| - 0.093 12.8 0.0 11 6.1 0.0 2.3 2 0 0 2 2 2 0 Penicillinase repressor DUF2192 PF09958.4 gi|385776597|ref|YP_005649165.1| - 4.8e-87 291.0 7.4 5.3e-87 290.8 5.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Phasin PF05597.6 gi|385776597|ref|YP_005649165.1| - 0.022 14.4 0.1 0.038 13.7 0.1 1.3 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) EntA_Immun PF08951.5 gi|385776597|ref|YP_005649165.1| - 1.1 9.4 7.6 9.6 6.4 0.3 3.4 2 1 1 3 3 3 0 Enterocin A Immunity NinB PF05772.7 gi|385776598|ref|YP_005649166.1| - 0.002 17.7 0.5 0.0026 17.3 0.4 1.4 1 1 0 1 1 1 1 NinB protein ADIP PF11559.3 gi|385776598|ref|YP_005649166.1| - 0.022 14.6 0.7 0.029 14.2 0.5 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Ada3 PF10198.4 gi|385776598|ref|YP_005649166.1| - 0.03 14.0 0.8 0.043 13.5 0.6 1.2 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 DivIC PF04977.10 gi|385776598|ref|YP_005649166.1| - 0.06 12.8 1.3 0.086 12.3 0.9 1.2 1 0 0 1 1 1 0 Septum formation initiator FlxA PF14282.1 gi|385776598|ref|YP_005649166.1| - 0.1 12.5 0.7 0.13 12.1 0.5 1.2 1 0 0 1 1 1 0 FlxA-like protein HTH_3 PF01381.17 gi|385776599|ref|YP_005649167.1| - 4.6e-10 39.1 0.1 1.6e-09 37.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_11 PF08279.7 gi|385776599|ref|YP_005649167.1| - 4.2e-05 23.0 0.7 8.5e-05 22.1 0.1 1.9 2 1 0 2 2 2 1 HTH domain HTH_19 PF12844.2 gi|385776599|ref|YP_005649167.1| - 0.00017 21.5 0.7 0.00039 20.4 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|385776599|ref|YP_005649167.1| - 0.00022 20.7 0.0 0.00046 19.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|385776599|ref|YP_005649167.1| - 0.00049 19.4 0.1 0.0017 17.6 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Trp_repressor PF01371.14 gi|385776599|ref|YP_005649167.1| - 0.00089 19.1 0.4 0.008 16.0 0.0 2.3 1 1 2 3 3 3 1 Trp repressor protein HTH_31 PF13560.1 gi|385776599|ref|YP_005649167.1| - 0.0023 18.0 0.0 0.0032 17.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|385776599|ref|YP_005649167.1| - 0.0045 16.5 0.1 0.023 14.2 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain Talin_middle PF09141.5 gi|385776599|ref|YP_005649167.1| - 0.0054 16.4 0.1 0.0075 15.9 0.1 1.4 1 1 0 1 1 1 1 Talin, middle domain HTH_5 PF01022.15 gi|385776599|ref|YP_005649167.1| - 0.017 14.7 0.0 0.055 13.1 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family IF2_N PF04760.10 gi|385776599|ref|YP_005649167.1| - 0.028 14.0 1.4 0.17 11.5 0.0 2.8 2 2 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region MarR_2 PF12802.2 gi|385776599|ref|YP_005649167.1| - 0.033 13.8 0.0 0.078 12.6 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.1 gi|385776599|ref|YP_005649167.1| - 0.051 13.7 0.1 0.23 11.6 0.0 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Sigma70_r4_2 PF08281.7 gi|385776599|ref|YP_005649167.1| - 0.059 12.8 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r3 PF04539.11 gi|385776599|ref|YP_005649167.1| - 0.088 12.7 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 DUF948 PF06103.6 gi|385776599|ref|YP_005649167.1| - 0.12 12.2 0.4 2.1 8.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HTH_28 PF13518.1 gi|385776599|ref|YP_005649167.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Stork_head PF10264.4 gi|385776599|ref|YP_005649167.1| - 0.14 12.3 0.4 2.3 8.4 0.0 2.5 1 1 1 2 2 2 0 Winged helix Storkhead-box1 domain HTH_8 PF02954.14 gi|385776599|ref|YP_005649167.1| - 0.16 11.5 0.4 0.51 9.9 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family DUF4319 PF14203.1 gi|385776599|ref|YP_005649167.1| - 0.23 11.0 4.4 0.15 11.6 1.5 1.8 2 1 0 2 2 1 0 Domain of unknown function (DUF4319) ADH_N PF08240.7 gi|385776600|ref|YP_005649168.1| - 0.013 15.2 0.0 0.077 12.7 0.0 2.0 1 1 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain Pyr_redox_2 PF07992.9 gi|385776600|ref|YP_005649168.1| - 0.013 15.3 0.0 0.03 14.2 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Aminotran_1_2 PF00155.16 gi|385776601|ref|YP_005649169.1| - 1.3e-40 139.4 0.0 1.5e-40 139.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|385776601|ref|YP_005649169.1| - 1.7e-14 53.2 0.0 2.7e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.12 gi|385776601|ref|YP_005649169.1| - 0.015 14.4 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|385776601|ref|YP_005649169.1| - 0.02 14.0 0.0 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Peptidase_C53 PF05550.6 gi|385776601|ref|YP_005649169.1| - 0.044 13.2 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 Pestivirus Npro endopeptidase C53 Cys_Met_Meta_PP PF01053.15 gi|385776601|ref|YP_005649169.1| - 0.074 11.3 0.0 0.11 10.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CbiK PF06180.6 gi|385776601|ref|YP_005649169.1| - 0.14 11.2 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) MoCF_biosynth PF00994.19 gi|385776602|ref|YP_005649170.1| - 7.2e-32 109.7 0.0 1e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain MT PF12777.2 gi|385776602|ref|YP_005649170.1| - 0.025 13.3 0.1 0.037 12.7 0.1 1.2 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor DUF3888 PF13027.1 gi|385776602|ref|YP_005649170.1| - 0.046 13.5 1.3 0.098 12.5 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3888) Abhydrolase_6 PF12697.2 gi|385776603|ref|YP_005649171.1| - 5.2e-34 118.1 0.0 6e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|385776603|ref|YP_005649171.1| - 2e-23 83.1 0.0 6.7e-21 74.8 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|385776603|ref|YP_005649171.1| - 2.1e-16 59.9 0.0 1.9e-15 56.8 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|385776603|ref|YP_005649171.1| - 0.00016 21.4 0.0 0.00034 20.4 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|385776603|ref|YP_005649171.1| - 0.00056 18.4 0.0 0.00076 18.0 0.0 1.3 1 0 0 1 1 1 1 Ndr family DUF1057 PF06342.7 gi|385776603|ref|YP_005649171.1| - 0.01 14.6 0.1 1.5 7.5 0.0 2.5 2 1 1 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF1057) DUF915 PF06028.6 gi|385776603|ref|YP_005649171.1| - 0.043 12.8 0.1 0.43 9.6 0.1 2.6 2 1 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) DUF2305 PF10230.4 gi|385776603|ref|YP_005649171.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2305) B5 PF03484.10 gi|385776604|ref|YP_005649172.1| - 1.2e-19 69.9 5.6 1e-17 63.6 0.8 3.4 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|385776604|ref|YP_005649172.1| - 1.1e-12 47.7 0.2 3.5e-12 46.1 0.1 1.8 1 1 0 1 1 1 1 B3/4 domain ArsB PF02040.10 gi|385776604|ref|YP_005649172.1| - 0.18 10.7 0.0 0.27 10.1 0.0 1.1 1 0 0 1 1 1 0 Arsenical pump membrane protein tRNA-synt_2d PF01409.15 gi|385776605|ref|YP_005649173.1| - 2e-84 282.6 0.0 3.5e-84 281.8 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) TrmB PF01978.14 gi|385776605|ref|YP_005649173.1| - 2.4e-06 27.1 8.4 3.5e-06 26.6 0.5 3.8 2 1 2 4 4 4 1 Sugar-specific transcriptional regulator TrmB tRNA-synt_2b PF00587.20 gi|385776605|ref|YP_005649173.1| - 5.7e-06 26.0 0.8 1.7e-05 24.5 0.6 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HTH_24 PF13412.1 gi|385776605|ref|YP_005649173.1| - 3.6e-05 23.0 0.3 3.6e-05 23.0 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding tRNA-synt_2 PF00152.15 gi|385776605|ref|YP_005649173.1| - 8.2e-05 21.5 1.2 0.034 12.9 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.1 gi|385776605|ref|YP_005649173.1| - 0.00011 22.3 1.5 0.0015 18.8 0.0 3.2 4 0 0 4 4 3 1 Winged helix DNA-binding domain S10_plectin PF03501.10 gi|385776605|ref|YP_005649173.1| - 0.00077 19.2 0.4 0.0079 16.0 0.0 2.6 2 1 1 3 3 3 1 Plectin/S10 domain Penicillinase_R PF03965.11 gi|385776605|ref|YP_005649173.1| - 0.0017 18.3 0.4 0.0078 16.2 0.0 2.3 2 0 0 2 2 2 1 Penicillinase repressor HTH_45 PF14947.1 gi|385776605|ref|YP_005649173.1| - 0.0042 16.8 2.6 0.066 13.0 0.2 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|385776605|ref|YP_005649173.1| - 0.0097 15.5 2.6 0.063 12.9 0.0 3.1 4 0 0 4 4 4 1 MarR family HTH_IclR PF09339.5 gi|385776605|ref|YP_005649173.1| - 0.012 15.2 0.0 0.03 13.9 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|385776605|ref|YP_005649173.1| - 0.018 15.1 0.2 0.29 11.2 0.0 2.7 2 0 0 2 2 2 0 Transcriptional regulator FeoC PF09012.5 gi|385776605|ref|YP_005649173.1| - 0.094 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR PF01047.17 gi|385776605|ref|YP_005649173.1| - 0.18 11.5 1.6 0.3 10.8 0.1 2.2 2 0 0 2 2 2 0 MarR family PadR PF03551.9 gi|385776605|ref|YP_005649173.1| - 0.33 10.7 4.7 0.18 11.6 0.2 2.9 4 0 0 4 4 4 0 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|385776605|ref|YP_005649173.1| - 0.45 10.4 8.5 5.3 7.0 0.8 3.7 2 2 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) Lactamase_B_3 PF13483.1 gi|385776606|ref|YP_005649174.1| - 9.2e-20 70.9 0.1 1.2e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|385776606|ref|YP_005649174.1| - 3.5e-15 56.0 0.1 4.8e-15 55.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385776606|ref|YP_005649174.1| - 2.7e-13 50.0 0.5 3.4e-13 49.6 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.19 gi|385776607|ref|YP_005649175.1| - 9.5e-40 136.3 0.0 1.1e-39 136.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.7 gi|385776608|ref|YP_005649176.1| - 2.3e-161 536.4 7.4 2.7e-161 536.2 5.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) N6_N4_Mtase PF01555.13 gi|385776608|ref|YP_005649176.1| - 0.11 11.9 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 DNA methylase DUF4537 PF15057.1 gi|385776609|ref|YP_005649177.1| - 0.1 12.3 0.0 0.11 12.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4537) HD PF01966.17 gi|385776610|ref|YP_005649178.1| - 5.7e-08 32.7 0.0 1.3e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 HD domain Hydrolase_3 PF08282.7 gi|385776611|ref|YP_005649179.1| - 2.3e-33 115.8 1.7 1.5e-19 70.5 0.5 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|385776611|ref|YP_005649179.1| - 1.4e-09 37.6 0.7 4.7e-05 22.8 0.1 3.0 2 1 1 3 3 3 3 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|385776611|ref|YP_005649179.1| - 1.1e-08 35.4 1.0 5.9e-06 26.5 0.0 2.7 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385776611|ref|YP_005649179.1| - 1.3e-06 28.9 1.7 0.037 14.4 0.0 3.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Flagellin_IN PF07196.8 gi|385776611|ref|YP_005649179.1| - 0.0071 16.2 0.2 0.015 15.3 0.1 1.5 1 0 0 1 1 1 1 Flagellin hook IN motif Hydrolase_6 PF13344.1 gi|385776611|ref|YP_005649179.1| - 0.026 14.4 0.1 0.81 9.6 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385776611|ref|YP_005649179.1| - 0.073 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like HAD_2 PF13419.1 gi|385776611|ref|YP_005649179.1| - 0.12 12.6 0.1 21 5.2 0.0 3.1 1 1 2 3 3 3 0 Haloacid dehalogenase-like hydrolase tRNA-synt_1c PF00749.16 gi|385776612|ref|YP_005649180.1| - 4e-79 265.5 0.0 1.3e-78 263.8 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|385776612|ref|YP_005649180.1| - 4.7e-23 81.7 1.4 1e-22 80.6 1.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Atg8 PF02991.11 gi|385776612|ref|YP_005649180.1| - 0.042 13.8 0.3 0.15 12.0 0.2 2.0 1 0 0 1 1 1 0 Autophagy protein Atg8 ubiquitin like Pex19 PF04614.7 gi|385776612|ref|YP_005649180.1| - 0.064 12.8 0.5 0.25 10.9 0.1 1.9 2 0 0 2 2 2 0 Pex19 protein family Ribosomal_L7Ae PF01248.21 gi|385776613|ref|YP_005649181.1| - 1.1e-33 114.5 2.0 1.4e-33 114.2 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|385776613|ref|YP_005649181.1| - 0.00084 19.0 0.1 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|385776613|ref|YP_005649181.1| - 0.004 16.9 0.0 0.0045 16.8 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 DbpA PF03880.10 gi|385776613|ref|YP_005649181.1| - 0.016 14.8 0.3 0.28 10.8 0.1 2.7 3 1 0 3 3 3 0 DbpA RNA binding domain tRNA-synt_2 PF00152.15 gi|385776614|ref|YP_005649182.1| - 1e-98 330.2 0.4 1.2e-98 329.9 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|385776614|ref|YP_005649182.1| - 6.1e-11 42.0 0.2 1.3e-10 40.9 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|385776614|ref|YP_005649182.1| - 2.2e-08 33.6 0.3 1.7e-05 24.1 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) SAP PF02037.22 gi|385776614|ref|YP_005649182.1| - 0.032 13.7 0.5 1.3 8.6 0.0 3.0 3 0 0 3 3 3 0 SAP domain LEM PF03020.10 gi|385776614|ref|YP_005649182.1| - 0.045 13.1 0.1 0.24 10.8 0.0 2.4 2 0 0 2 2 2 0 LEM domain tRNA-synt_2b PF00587.20 gi|385776614|ref|YP_005649182.1| - 0.063 12.8 0.4 11 5.6 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetase class II core domain (G, H, P, S and T) Peptidase_M50 PF02163.17 gi|385776615|ref|YP_005649183.1| - 7.8e-26 90.2 1.2 7.8e-26 90.2 0.8 2.2 3 1 0 3 3 3 1 Peptidase family M50 PDZ_2 PF13180.1 gi|385776615|ref|YP_005649183.1| - 8.5e-08 31.9 0.0 1.9e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|385776615|ref|YP_005649183.1| - 3.9e-06 26.9 0.0 8.4e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|385776615|ref|YP_005649183.1| - 0.012 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain NTP_transf_2 PF01909.18 gi|385776616|ref|YP_005649184.1| - 4.3e-06 26.9 0.2 7.7e-06 26.1 0.1 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF1122 PF06557.6 gi|385776617|ref|YP_005649185.1| - 2.5e-56 189.4 0.4 3.3e-56 189.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) DUF3271 PF11675.3 gi|385776617|ref|YP_005649185.1| - 0.045 12.8 0.3 0.068 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3271) CMAS PF02353.15 gi|385776617|ref|YP_005649185.1| - 0.13 11.3 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Radical_SAM PF04055.16 gi|385776618|ref|YP_005649186.1| - 6.1e-09 36.2 1.2 3.6e-07 30.5 0.0 3.2 2 2 1 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|385776618|ref|YP_005649186.1| - 2.4e-08 34.0 0.0 6.1e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|385776618|ref|YP_005649186.1| - 9.6e-08 32.2 0.3 6.5e-06 26.3 0.0 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain eRF1_1 PF03463.10 gi|385776619|ref|YP_005649187.1| - 1e-25 89.8 1.7 1.8e-25 89.0 0.4 2.0 2 0 0 2 2 2 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|385776619|ref|YP_005649187.1| - 2.2e-22 79.4 0.8 8.6e-22 77.5 0.2 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|385776619|ref|YP_005649187.1| - 5e-17 62.4 0.3 8.7e-17 61.6 0.2 1.4 1 0 0 1 1 1 1 eRF1 domain 2 EutQ PF06249.7 gi|385776619|ref|YP_005649187.1| - 0.022 14.2 0.3 1.1 8.8 0.0 2.7 2 1 1 3 3 3 0 Ethanolamine utilisation protein EutQ Acetyltransf_1 PF00583.19 gi|385776620|ref|YP_005649188.1| - 9.6e-18 64.0 0.2 1.4e-17 63.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|385776620|ref|YP_005649188.1| - 5.8e-13 48.8 0.4 8.6e-13 48.2 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|385776620|ref|YP_005649188.1| - 7.1e-12 45.4 0.0 9.6e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385776620|ref|YP_005649188.1| - 9.3e-08 31.9 0.0 2.3e-07 30.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385776620|ref|YP_005649188.1| - 2.2e-07 30.9 0.7 3.1e-07 30.4 0.5 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385776620|ref|YP_005649188.1| - 6.7e-06 25.7 0.0 1.1e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein GNAT_acetyltr_2 PF13718.1 gi|385776620|ref|YP_005649188.1| - 2e-05 24.0 0.0 0.0012 18.1 0.0 2.1 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Acetyltransf_8 PF13523.1 gi|385776620|ref|YP_005649188.1| - 0.00012 21.9 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|385776620|ref|YP_005649188.1| - 0.00083 19.5 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|385776620|ref|YP_005649188.1| - 0.015 15.1 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4367 PF14285.1 gi|385776620|ref|YP_005649188.1| - 0.062 12.6 0.6 0.088 12.1 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4367) Acetyltransf_13 PF13880.1 gi|385776620|ref|YP_005649188.1| - 0.078 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.1 gi|385776620|ref|YP_005649188.1| - 0.12 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_pol_B_exo1 PF03104.14 gi|385776621|ref|YP_005649189.1| - 3.4e-42 144.4 1.9 3.4e-42 144.4 1.3 2.3 3 0 0 3 3 3 1 DNA polymerase family B, exonuclease domain DNA_pol_B PF00136.16 gi|385776621|ref|YP_005649189.1| - 7.9e-24 84.2 3.1 7.7e-17 61.2 0.4 2.4 1 1 1 2 2 2 2 DNA polymerase family B Toprim_4 PF13662.1 gi|385776622|ref|YP_005649190.1| - 1.5e-09 37.7 0.0 4.6e-09 36.1 0.0 1.9 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|385776622|ref|YP_005649190.1| - 3.3e-05 23.7 0.6 0.00015 21.6 0.1 2.4 2 0 0 2 2 2 1 Toprim domain HHH_3 PF12836.2 gi|385776622|ref|YP_005649190.1| - 0.26 11.2 0.1 0.26 11.2 0.1 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix motif tRNA-synt_1b PF00579.20 gi|385776623|ref|YP_005649191.1| - 1.2e-49 169.0 0.3 2.7e-35 121.9 0.1 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (W and Y) Extensin_1 PF02095.10 gi|385776624|ref|YP_005649192.1| - 0.024 14.6 1.4 0.052 13.5 0.9 1.6 1 0 0 1 1 1 0 Extensin-like protein repeat AIRS PF00586.19 gi|385776625|ref|YP_005649193.1| - 7.4e-10 38.9 0.0 1.7e-09 37.7 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|385776625|ref|YP_005649193.1| - 1.6e-07 31.4 0.0 3.3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain HrpF PF06266.7 gi|385776625|ref|YP_005649193.1| - 0.077 13.1 0.0 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 HrpF protein CbiC PF02570.10 gi|385776625|ref|YP_005649193.1| - 0.13 11.6 0.1 0.24 10.7 0.1 1.3 1 0 0 1 1 1 0 Precorrin-8X methylmutase Ribosomal_S13 PF00416.17 gi|385776626|ref|YP_005649194.1| - 9.7e-35 119.2 0.0 1.3e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.1 gi|385776626|ref|YP_005649194.1| - 0.0026 17.4 0.0 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix containing domain S4 PF01479.20 gi|385776627|ref|YP_005649195.1| - 4.7e-18 64.3 0.1 9.9e-18 63.3 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|385776627|ref|YP_005649195.1| - 0.016 15.5 0.9 0.028 14.7 0.3 1.7 1 1 1 2 2 2 0 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|385776628|ref|YP_005649196.1| - 1.6e-43 147.3 0.1 1.8e-43 147.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|385776629|ref|YP_005649197.1| - 4.6e-28 97.6 0.0 8.9e-28 96.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|385776629|ref|YP_005649197.1| - 8e-11 40.8 0.0 9.7e-11 40.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.1 gi|385776629|ref|YP_005649197.1| - 6.9e-05 23.0 6.6 0.0015 18.7 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385776629|ref|YP_005649197.1| - 0.043 14.2 8.4 0.39 11.1 2.9 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385776629|ref|YP_005649197.1| - 0.1 12.3 11.4 0.55 10.0 0.8 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385776629|ref|YP_005649197.1| - 0.61 10.1 7.9 9 6.4 0.9 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Ribosomal_L18e PF00828.14 gi|385776630|ref|YP_005649198.1| - 3.1e-14 53.4 0.3 3.9e-14 53.1 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|385776631|ref|YP_005649199.1| - 5.4e-28 97.6 0.2 6.7e-28 97.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|385776632|ref|YP_005649200.1| - 3.5e-29 101.4 0.1 4e-29 101.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|385776633|ref|YP_005649201.1| - 3.8e-31 106.8 0.4 4.2e-31 106.7 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|385776633|ref|YP_005649201.1| - 0.038 14.0 0.1 0.061 13.4 0.1 1.4 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S2 PF00318.15 gi|385776634|ref|YP_005649202.1| - 1.2e-39 135.7 0.0 1.1e-20 73.8 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.12 gi|385776635|ref|YP_005649203.1| - 2.6e-97 325.0 0.1 2.9e-97 324.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|385776635|ref|YP_005649203.1| - 0.0016 17.4 0.0 0.007 15.3 0.0 1.8 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase AA_kinase PF00696.23 gi|385776637|ref|YP_005649205.1| - 6.2e-22 78.3 0.0 8.4e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family GATase_5 PF13507.1 gi|385776637|ref|YP_005649205.1| - 0.14 10.9 0.0 0.45 9.3 0.0 1.7 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain FMN_dh PF01070.13 gi|385776638|ref|YP_005649206.1| - 7.6e-28 97.3 0.0 7.6e-21 74.3 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|385776638|ref|YP_005649206.1| - 0.00024 20.1 1.8 0.049 12.5 0.2 2.7 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|385776638|ref|YP_005649206.1| - 0.0019 17.4 2.0 0.063 12.5 0.0 3.6 4 1 1 5 5 5 1 PcrB family Glu_synthase PF01645.12 gi|385776638|ref|YP_005649206.1| - 0.017 14.0 0.1 0.034 13.0 0.1 1.5 1 0 0 1 1 1 0 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|385776638|ref|YP_005649206.1| - 0.095 11.6 0.9 0.59 9.0 0.1 2.4 2 1 0 2 2 2 0 Dihydroorotate dehydrogenase polyprenyl_synt PF00348.12 gi|385776639|ref|YP_005649207.1| - 1.1e-73 247.3 0.1 1.3e-73 247.0 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase UPF0239 PF06783.6 gi|385776639|ref|YP_005649207.1| - 0.017 15.0 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0239) RPW8 PF05659.6 gi|385776639|ref|YP_005649207.1| - 0.045 13.2 0.2 0.086 12.3 0.2 1.5 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Glycos_transf_4 PF00953.16 gi|385776640|ref|YP_005649208.1| - 2.4e-34 118.4 19.2 2.4e-34 118.4 13.3 2.1 3 0 0 3 3 3 1 Glycosyl transferase family 4 MNSV_P7B PF06692.6 gi|385776640|ref|YP_005649208.1| - 7.1 6.4 8.5 10 5.9 2.6 2.7 2 0 0 2 2 2 0 Melon necrotic spot virus P7B protein PaREP1 PF05942.6 gi|385776641|ref|YP_005649209.1| - 0.022 14.6 0.0 0.055 13.3 0.0 1.7 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family VASP_tetra PF08776.6 gi|385776641|ref|YP_005649209.1| - 0.12 11.7 0.7 0.74 9.1 0.0 2.5 2 0 0 2 2 2 0 VASP tetramerisation domain SieB PF14163.1 gi|385776642|ref|YP_005649210.1| - 0.025 14.1 0.7 0.029 13.9 0.5 1.0 1 0 0 1 1 1 0 Superinfection exclusion protein B Colicin PF01024.14 gi|385776642|ref|YP_005649210.1| - 0.17 11.4 0.6 0.18 11.3 0.4 1.1 1 0 0 1 1 1 0 Colicin pore forming domain ApoLp-III PF07464.6 gi|385776643|ref|YP_005649211.1| - 0.0033 17.4 3.8 0.0034 17.4 2.6 1.0 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) ISG65-75 PF11727.3 gi|385776643|ref|YP_005649211.1| - 0.025 13.6 8.0 0.025 13.6 5.6 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF883 PF05957.8 gi|385776643|ref|YP_005649211.1| - 0.069 13.5 1.0 0.07 13.5 0.7 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) CAP18_C PF12153.3 gi|385776643|ref|YP_005649211.1| - 0.07 12.7 0.5 0.07 12.7 0.4 1.9 2 0 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) NTS PF15447.1 gi|385776643|ref|YP_005649211.1| - 0.097 13.0 9.6 0.8 10.1 0.2 2.1 2 0 0 2 2 2 0 N-terminal segments of PfEMP1 DUF1664 PF07889.7 gi|385776643|ref|YP_005649211.1| - 0.13 12.1 1.3 0.14 11.9 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) HK97-gp10_like PF04883.7 gi|385776643|ref|YP_005649211.1| - 0.24 12.3 6.4 0.72 10.8 4.4 1.7 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component YtxH PF12732.2 gi|385776643|ref|YP_005649211.1| - 2.1 8.7 5.4 2.2 8.7 3.8 1.1 1 0 0 1 1 1 0 YtxH-like protein HTH_23 PF13384.1 gi|385776644|ref|YP_005649212.1| - 6.1e-06 25.7 0.2 0.0026 17.3 0.0 3.0 3 0 0 3 3 3 2 Homeodomain-like domain DDE_Tnp_IS240 PF13610.1 gi|385776644|ref|YP_005649212.1| - 6.1e-06 26.2 0.1 2.5e-05 24.2 0.1 2.0 2 1 0 2 2 2 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|385776644|ref|YP_005649212.1| - 0.00086 18.6 0.0 0.0026 17.0 0.0 1.9 1 1 0 1 1 1 1 Transposase IS66 family HTH_28 PF13518.1 gi|385776644|ref|YP_005649212.1| - 0.0032 17.4 1.0 0.69 9.9 0.1 2.8 3 0 0 3 3 3 2 Helix-turn-helix domain rve PF00665.21 gi|385776644|ref|YP_005649212.1| - 0.0051 16.9 0.0 0.0081 16.2 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain HTH_psq PF05225.11 gi|385776644|ref|YP_005649212.1| - 0.021 14.3 0.1 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DUF457 PF04307.9 gi|385776645|ref|YP_005649213.1| - 2.9e-14 52.6 21.6 4.6e-13 48.8 15.0 2.9 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2628 PF10947.3 gi|385776645|ref|YP_005649213.1| - 0.018 14.7 0.4 0.018 14.7 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2628) SCF PF02404.10 gi|385776645|ref|YP_005649213.1| - 0.064 12.4 0.2 0.14 11.2 0.2 1.5 1 0 0 1 1 1 0 Stem cell factor DUF373 PF04123.8 gi|385776645|ref|YP_005649213.1| - 1.3 7.9 6.9 2.4 7.0 4.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Oxidored_q4 PF00507.14 gi|385776645|ref|YP_005649213.1| - 6.8 6.5 11.9 0.67 9.7 0.4 2.7 3 0 0 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF1614 PF07758.6 gi|385776646|ref|YP_005649214.1| - 6e-48 162.8 11.4 6e-48 162.8 7.9 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1614) TM_helix PF05552.7 gi|385776646|ref|YP_005649214.1| - 3.4 7.4 7.6 18 5.1 0.1 3.2 3 0 0 3 3 3 0 Conserved TM helix NTP_transf_3 PF12804.2 gi|385776647|ref|YP_005649215.1| - 2.7e-12 47.0 0.0 4.4e-12 46.3 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385776647|ref|YP_005649215.1| - 0.0061 16.0 0.0 0.0081 15.6 0.0 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|385776647|ref|YP_005649215.1| - 0.11 11.8 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 Nucleotidyl transferase AIRS_C PF02769.17 gi|385776648|ref|YP_005649216.1| - 1.2e-15 57.8 0.3 1.9e-15 57.2 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|385776648|ref|YP_005649216.1| - 1.1e-11 44.8 0.6 4e-11 43.0 0.1 2.2 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain ABC_tran PF00005.22 gi|385776649|ref|YP_005649217.1| - 4.1e-29 101.6 0.0 6.7e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385776649|ref|YP_005649217.1| - 3.5e-17 63.2 0.0 2.4e-12 47.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|385776649|ref|YP_005649217.1| - 4.2e-08 32.6 0.0 1.2e-05 24.5 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|385776649|ref|YP_005649217.1| - 0.00011 21.4 0.1 0.18 11.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385776649|ref|YP_005649217.1| - 0.0069 15.8 0.0 0.022 14.2 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|385776649|ref|YP_005649217.1| - 0.012 15.1 0.1 0.98 8.7 0.0 2.1 1 1 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|385776649|ref|YP_005649217.1| - 0.014 15.7 3.0 0.04 14.2 2.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385776649|ref|YP_005649217.1| - 0.03 14.2 0.2 8.1 6.3 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|385776649|ref|YP_005649217.1| - 0.043 14.0 0.4 0.23 11.6 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|385776649|ref|YP_005649217.1| - 0.048 12.3 0.0 0.057 12.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|385776649|ref|YP_005649217.1| - 0.049 13.7 0.3 0.34 11.0 0.2 2.4 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|385776649|ref|YP_005649217.1| - 0.051 13.1 0.0 0.12 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|385776649|ref|YP_005649217.1| - 0.061 12.7 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|385776649|ref|YP_005649217.1| - 0.065 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SbcCD_C PF13558.1 gi|385776649|ref|YP_005649217.1| - 0.11 12.4 0.0 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|385776649|ref|YP_005649217.1| - 0.12 12.1 0.0 2.9 7.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|385776649|ref|YP_005649217.1| - 0.15 11.8 0.1 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain KaiC PF06745.8 gi|385776649|ref|YP_005649217.1| - 0.15 11.1 1.0 3.6 6.6 0.0 2.8 3 0 0 3 3 3 0 KaiC ABC2_membrane_3 PF12698.2 gi|385776650|ref|YP_005649218.1| - 5.3e-15 55.2 38.1 7.5e-15 54.8 26.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|385776650|ref|YP_005649218.1| - 2.2e-11 43.3 34.4 8.2e-10 38.2 14.1 2.7 2 1 1 3 3 3 2 ABC-2 type transporter ECH PF00378.15 gi|385776651|ref|YP_005649219.1| - 5.4e-26 91.2 0.0 6.7e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family PadR PF03551.9 gi|385776652|ref|YP_005649220.1| - 1.4e-18 66.4 0.1 2.8e-18 65.4 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF505 PF04458.7 gi|385776652|ref|YP_005649220.1| - 0.00024 19.3 0.5 0.0013 16.9 0.0 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF505) DUF4364 PF14277.1 gi|385776652|ref|YP_005649220.1| - 0.00035 20.2 0.2 0.00087 18.9 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.1 gi|385776652|ref|YP_005649220.1| - 0.001 19.3 0.1 0.0096 16.2 0.0 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|385776652|ref|YP_005649220.1| - 0.0036 16.8 0.0 0.012 15.2 0.0 1.9 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_42 PF06224.7 gi|385776652|ref|YP_005649220.1| - 0.0047 16.3 0.0 0.005 16.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|385776652|ref|YP_005649220.1| - 0.014 15.1 0.3 0.22 11.2 0.0 2.8 2 2 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_32 PF13565.1 gi|385776652|ref|YP_005649220.1| - 0.019 15.7 0.1 0.97 10.2 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain FUR PF01475.14 gi|385776652|ref|YP_005649220.1| - 0.021 14.7 0.0 0.027 14.3 0.0 1.4 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.15 gi|385776652|ref|YP_005649220.1| - 0.042 13.5 0.0 0.48 10.1 0.0 2.5 3 1 1 4 4 4 0 Bacterial regulatory protein, arsR family DUF1495 PF07381.6 gi|385776652|ref|YP_005649220.1| - 0.058 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|385776652|ref|YP_005649220.1| - 0.081 12.7 0.1 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix HisG_C PF08029.6 gi|385776652|ref|YP_005649220.1| - 0.12 12.3 0.3 0.48 10.3 0.0 2.2 2 1 0 2 2 2 0 HisG, C-terminal domain CCDC-167 PF15188.1 gi|385776652|ref|YP_005649220.1| - 0.52 10.2 3.3 4.2 7.3 2.0 2.2 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 TrmB PF01978.14 gi|385776653|ref|YP_005649221.1| - 9.7e-15 54.0 0.1 1.4e-14 53.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385776653|ref|YP_005649221.1| - 5.6e-08 32.3 0.0 9e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|385776653|ref|YP_005649221.1| - 5.9e-06 25.8 0.6 1.5e-05 24.5 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|385776653|ref|YP_005649221.1| - 3.4e-05 23.4 0.1 5.9e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|385776653|ref|YP_005649221.1| - 0.00018 21.2 0.1 0.00034 20.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|385776653|ref|YP_005649221.1| - 0.00047 20.4 0.0 0.00083 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|385776653|ref|YP_005649221.1| - 0.00089 18.7 0.1 0.0013 18.2 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|385776653|ref|YP_005649221.1| - 0.0019 17.5 0.3 0.0036 16.6 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|385776653|ref|YP_005649221.1| - 0.0076 16.1 0.1 0.014 15.2 0.1 1.6 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.1 gi|385776653|ref|YP_005649221.1| - 0.01 15.3 0.2 0.018 14.5 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) z-alpha PF02295.12 gi|385776653|ref|YP_005649221.1| - 0.04 13.6 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_36 PF13730.1 gi|385776653|ref|YP_005649221.1| - 0.041 14.0 0.1 0.079 13.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.12 gi|385776653|ref|YP_005649221.1| - 0.11 12.1 0.1 0.16 11.6 0.1 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.16 gi|385776653|ref|YP_005649221.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|385776653|ref|YP_005649221.1| - 0.13 12.3 0.1 0.22 11.5 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|385776653|ref|YP_005649221.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF2250 PF10007.4 gi|385776653|ref|YP_005649221.1| - 0.13 12.1 0.3 0.25 11.2 0.1 1.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Antitoxin-MazE PF04014.13 gi|385776654|ref|YP_005649222.1| - 4.8e-11 42.1 0.1 5.1e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-1a PF01176.14 gi|385776654|ref|YP_005649222.1| - 3.7e-05 23.0 0.1 5e-05 22.6 0.1 1.3 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF1905 PF08922.6 gi|385776654|ref|YP_005649222.1| - 0.029 13.9 0.1 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) TatD_DNase PF01026.16 gi|385776655|ref|YP_005649223.1| - 1.7e-52 178.1 0.0 2e-52 177.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DXP_synthase_N PF13292.1 gi|385776655|ref|YP_005649223.1| - 0.054 12.4 0.0 0.084 11.7 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase NADH5_C PF06455.6 gi|385776656|ref|YP_005649224.1| - 0.6 9.4 5.6 0.67 9.3 3.9 1.1 1 0 0 1 1 1 0 NADH dehydrogenase subunit 5 C-terminus ATP_synt_I PF03899.10 gi|385776657|ref|YP_005649225.1| - 0.017 15.2 3.1 0.022 14.8 2.2 1.2 1 0 0 1 1 1 0 ATP synthase I chain Polysacc_synt_C PF14667.1 gi|385776657|ref|YP_005649225.1| - 1.6 8.5 7.5 1.8 8.3 5.2 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain COX1 PF00115.15 gi|385776659|ref|YP_005649227.1| - 1.5e-54 185.3 63.8 1.5e-54 185.3 44.3 2.8 1 1 2 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I Aldolase_2 PF10120.4 gi|385776660|ref|YP_005649228.1| - 9.5e-59 197.5 0.1 1.1e-58 197.3 0.0 1.0 1 0 0 1 1 1 1 Putative aldolase PadR PF03551.9 gi|385776661|ref|YP_005649229.1| - 8.1e-17 60.7 0.1 1.9e-16 59.5 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|385776661|ref|YP_005649229.1| - 3.7e-05 23.3 1.3 0.0061 16.2 0.5 3.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|385776661|ref|YP_005649229.1| - 0.00026 20.7 2.3 0.0003 20.5 0.3 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|385776661|ref|YP_005649229.1| - 0.00036 20.1 0.7 0.0008 19.0 0.5 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.1 gi|385776661|ref|YP_005649229.1| - 0.00046 20.4 0.0 0.00092 19.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.7 gi|385776661|ref|YP_005649229.1| - 0.0084 14.2 0.3 0.0084 14.2 0.2 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF505) Penicillinase_R PF03965.11 gi|385776661|ref|YP_005649229.1| - 0.014 15.4 0.1 0.041 13.9 0.1 2.0 1 1 0 1 1 1 0 Penicillinase repressor DUF1495 PF07381.6 gi|385776661|ref|YP_005649229.1| - 0.024 14.2 1.1 0.083 12.5 0.2 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) Tox-REase-7 PF15649.1 gi|385776661|ref|YP_005649229.1| - 0.039 14.0 0.1 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 7 DUF4116 PF13475.1 gi|385776664|ref|YP_005649232.1| - 0.39 10.2 4.7 4.7 6.7 0.1 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4116) CbiA PF01656.18 gi|385776666|ref|YP_005649234.1| - 1.3e-26 93.2 0.1 1.6e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|385776666|ref|YP_005649234.1| - 2e-13 50.0 0.0 2.4e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|385776666|ref|YP_005649234.1| - 1.2e-11 44.7 0.0 1.6e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|385776666|ref|YP_005649234.1| - 2.6e-06 26.6 0.8 0.0002 20.5 0.1 2.3 1 1 1 2 2 2 2 Anion-transporting ATPase ParA PF10609.4 gi|385776666|ref|YP_005649234.1| - 0.0023 17.8 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like Fer4_NifH PF00142.13 gi|385776666|ref|YP_005649234.1| - 0.023 13.9 0.1 0.059 12.5 0.1 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|385776666|ref|YP_005649234.1| - 0.12 11.8 0.2 0.48 9.8 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SMP_2 PF10144.4 gi|385776667|ref|YP_005649235.1| - 0.016 14.3 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial virulence factor haemolysin Calpain_III PF01067.17 gi|385776668|ref|YP_005649236.1| - 0.042 13.5 0.1 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 Calpain large subunit, domain III CN_hydrolase PF00795.17 gi|385776669|ref|YP_005649237.1| - 3.6e-12 46.0 0.0 7.5e-11 41.7 0.0 2.1 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase CBS PF00571.23 gi|385776670|ref|YP_005649238.1| - 5.2e-43 144.5 1.6 5e-10 39.0 0.0 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|385776670|ref|YP_005649238.1| - 0.00013 22.3 1.3 0.00013 22.3 0.9 2.0 3 0 0 3 3 3 1 Sigma 54 modulation protein / S30EA ribosomal protein Hist_deacetyl PF00850.14 gi|385776671|ref|YP_005649239.1| - 3.3e-76 256.5 0.0 3.9e-76 256.3 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain ATP-grasp PF02222.17 gi|385776672|ref|YP_005649240.1| - 1.8e-42 144.5 0.0 3.7e-42 143.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385776672|ref|YP_005649240.1| - 1.7e-20 73.5 0.1 3.1e-20 72.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|385776672|ref|YP_005649240.1| - 2.6e-10 40.0 0.2 6e-10 38.8 0.0 1.6 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|385776672|ref|YP_005649240.1| - 6.7e-10 38.6 0.0 1.3e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.9 gi|385776672|ref|YP_005649240.1| - 4.2e-08 33.2 0.0 7.1e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|385776672|ref|YP_005649240.1| - 2.2e-06 27.3 0.0 1.2e-05 24.8 0.0 2.2 2 1 0 2 2 2 1 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|385776672|ref|YP_005649240.1| - 0.00014 21.4 0.0 0.00035 20.1 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_chain PF00289.17 gi|385776672|ref|YP_005649240.1| - 0.0013 18.7 0.2 0.0026 17.8 0.1 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|385776672|ref|YP_005649240.1| - 0.0014 17.7 0.0 0.0027 16.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|385776672|ref|YP_005649240.1| - 0.0046 15.9 0.0 0.0082 15.0 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain 3HCDH_N PF02737.13 gi|385776672|ref|YP_005649240.1| - 0.017 14.8 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|385776672|ref|YP_005649240.1| - 0.032 14.0 0.2 0.075 12.8 0.1 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|385776672|ref|YP_005649240.1| - 0.036 14.4 1.1 0.44 10.9 0.1 2.8 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GARS_N PF02844.10 gi|385776672|ref|YP_005649240.1| - 0.074 13.5 0.3 0.18 12.3 0.2 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain PDDEXK_3 PF13366.1 gi|385776673|ref|YP_005649241.1| - 0.0016 18.4 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily McrBC PF10117.4 gi|385776673|ref|YP_005649241.1| - 0.013 14.4 0.2 0.017 14.0 0.1 1.1 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component RE_NgoPII PF09521.5 gi|385776673|ref|YP_005649241.1| - 0.057 12.1 0.1 0.11 11.2 0.0 1.5 2 0 0 2 2 2 0 NgoPII restriction endonuclease TA0956 PF11513.3 gi|385776675|ref|YP_005649243.1| - 0.28 11.2 2.0 1.1 9.3 0.5 2.2 2 1 0 2 2 2 0 Thermoplasma acidophilum protein TA0956 DAO PF01266.19 gi|385776677|ref|YP_005649245.1| - 3.5e-14 52.4 0.0 1.1e-07 31.0 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|385776677|ref|YP_005649245.1| - 0.0059 16.2 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|385776677|ref|YP_005649245.1| - 0.0076 15.3 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|385776677|ref|YP_005649245.1| - 0.0079 16.4 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|385776677|ref|YP_005649245.1| - 0.0084 16.1 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|385776677|ref|YP_005649245.1| - 0.016 15.2 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.11 gi|385776677|ref|YP_005649245.1| - 0.034 13.5 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|385776677|ref|YP_005649245.1| - 0.039 13.6 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.16 gi|385776677|ref|YP_005649245.1| - 0.041 13.4 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|385776677|ref|YP_005649245.1| - 0.05 13.4 0.0 0.1 12.4 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|385776677|ref|YP_005649245.1| - 0.059 12.5 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|385776677|ref|YP_005649245.1| - 0.14 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain Ole-e-6 PF09253.5 gi|385776678|ref|YP_005649246.1| - 0.15 11.7 0.0 0.36 10.4 0.0 1.6 1 0 0 1 1 1 0 Pollen allergen ole e 6 MoCF_biosynth PF00994.19 gi|385776679|ref|YP_005649247.1| - 7.9e-30 103.1 0.1 9.1e-30 102.9 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain B12-binding PF02310.14 gi|385776679|ref|YP_005649247.1| - 0.078 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain Fer4_8 PF13183.1 gi|385776680|ref|YP_005649248.1| - 2.9e-10 40.0 4.0 5.4e-10 39.1 2.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385776680|ref|YP_005649248.1| - 3.7e-09 36.7 3.1 1.2e-08 35.1 2.2 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385776680|ref|YP_005649248.1| - 1.6e-08 34.8 5.4 3.1e-08 33.8 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385776680|ref|YP_005649248.1| - 3.1e-08 33.7 6.0 7.4e-08 32.5 4.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385776680|ref|YP_005649248.1| - 7.6e-08 32.0 6.9 2.4e-07 30.4 4.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385776680|ref|YP_005649248.1| - 9.5e-08 31.3 15.2 0.00087 18.7 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385776680|ref|YP_005649248.1| - 1.4e-07 31.7 2.8 0.006 16.9 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385776680|ref|YP_005649248.1| - 1.1e-06 28.2 10.6 0.0034 17.1 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385776680|ref|YP_005649248.1| - 7.8e-06 25.5 13.3 0.0039 16.9 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|385776680|ref|YP_005649248.1| - 1.6e-05 25.1 18.0 0.016 15.7 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385776680|ref|YP_005649248.1| - 2.3e-05 24.3 11.1 0.0036 17.5 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385776680|ref|YP_005649248.1| - 0.00015 21.5 7.9 0.00035 20.3 5.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385776680|ref|YP_005649248.1| - 0.00037 20.9 2.8 0.48 11.0 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|385776680|ref|YP_005649248.1| - 0.0014 19.3 10.1 0.022 15.4 7.3 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|385776680|ref|YP_005649248.1| - 0.0041 17.4 3.9 1.3 9.4 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|385776680|ref|YP_005649248.1| - 0.19 11.3 2.1 0.69 9.5 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DEAD PF00270.24 gi|385776681|ref|YP_005649249.1| - 2.1e-24 85.9 0.0 5.5e-24 84.5 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385776681|ref|YP_005649249.1| - 1e-17 63.7 0.0 9e-16 57.5 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|385776681|ref|YP_005649249.1| - 8e-15 55.1 0.2 2.5e-14 53.6 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|385776681|ref|YP_005649249.1| - 4.2e-07 29.9 0.1 1.5e-06 28.1 0.0 1.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|385776681|ref|YP_005649249.1| - 0.00059 19.2 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 SecA DEAD-like domain DUF460 PF04312.8 gi|385776681|ref|YP_005649249.1| - 0.0017 17.8 0.0 0.0065 16.0 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) AAA_19 PF13245.1 gi|385776681|ref|YP_005649249.1| - 0.0059 16.3 0.0 0.041 13.6 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain Oxidored-like PF09791.4 gi|385776681|ref|YP_005649249.1| - 0.091 12.2 3.0 0.24 10.8 2.1 1.7 1 0 0 1 1 1 0 Oxidoreductase-like protein, N-terminal Pox_polyA_pol_N PF12630.2 gi|385776682|ref|YP_005649250.1| - 0.1 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain QueC PF06508.8 gi|385776683|ref|YP_005649251.1| - 3.9e-59 199.4 0.0 5.8e-59 198.8 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.1 gi|385776683|ref|YP_005649251.1| - 1.5e-15 56.9 0.0 3.5e-15 55.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|385776683|ref|YP_005649251.1| - 7e-13 48.6 0.0 1.5e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.9 gi|385776683|ref|YP_005649251.1| - 1.8e-10 40.6 0.0 9.1e-10 38.3 0.0 2.1 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|385776683|ref|YP_005649251.1| - 6.3e-07 28.2 0.0 2.1e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|385776683|ref|YP_005649251.1| - 9.6e-06 25.2 0.0 1.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|385776683|ref|YP_005649251.1| - 7.3e-05 22.3 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family GATase_2 PF00310.16 gi|385776683|ref|YP_005649251.1| - 0.00068 18.4 0.0 0.6 8.7 0.0 2.6 2 1 1 3 3 3 2 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|385776683|ref|YP_005649251.1| - 0.0027 16.6 0.0 0.031 13.1 0.0 2.1 2 0 0 2 2 2 1 NAD synthase FeoB_N PF02421.13 gi|385776683|ref|YP_005649251.1| - 0.02 14.1 0.1 0.035 13.3 0.1 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B DUF4174 PF13778.1 gi|385776683|ref|YP_005649251.1| - 0.057 13.5 0.1 0.26 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4174) TauE PF01925.14 gi|385776684|ref|YP_005649252.1| - 3.6e-38 131.3 28.7 4.3e-38 131.1 19.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Luteo_coat PF00894.13 gi|385776684|ref|YP_005649252.1| - 0.12 12.1 0.2 0.19 11.5 0.2 1.2 1 0 0 1 1 1 0 Luteovirus coat protein DUF1634 PF07843.6 gi|385776685|ref|YP_005649253.1| - 4.7e-32 109.7 9.1 5.6e-32 109.5 6.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) DUF4097 PF13349.1 gi|385776685|ref|YP_005649253.1| - 0.018 14.6 2.7 0.036 13.5 1.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) DUF2910 PF11139.3 gi|385776685|ref|YP_005649253.1| - 0.79 8.8 5.0 0.73 8.9 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2910) DoxX_3 PF13781.1 gi|385776685|ref|YP_005649253.1| - 3.5 8.0 7.2 1.5 9.2 1.4 2.1 1 1 1 2 2 2 0 DoxX-like family Act-Frag_cataly PF09192.5 gi|385776686|ref|YP_005649254.1| - 0.00025 20.1 0.6 0.0019 17.2 0.0 2.0 2 0 0 2 2 2 2 Actin-fragmin kinase, catalytic TrmB PF01978.14 gi|385776687|ref|YP_005649255.1| - 0.03 14.0 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.6 gi|385776687|ref|YP_005649255.1| - 0.04 13.9 0.0 0.044 13.8 0.0 1.0 1 0 0 1 1 1 0 Rio2, N-terminal Stork_head PF10264.4 gi|385776687|ref|YP_005649255.1| - 0.045 13.9 0.0 0.075 13.2 0.0 1.3 1 1 0 1 1 1 0 Winged helix Storkhead-box1 domain UPF0126 PF03458.8 gi|385776688|ref|YP_005649256.1| - 6.2e-44 147.5 13.2 5.8e-23 80.3 3.6 2.1 2 0 0 2 2 2 2 UPF0126 domain TRIC PF05197.8 gi|385776688|ref|YP_005649256.1| - 0.00031 20.2 3.6 0.0021 17.5 2.5 2.0 1 1 0 1 1 1 1 TRIC channel CoA_binding_3 PF13727.1 gi|385776689|ref|YP_005649257.1| - 0.96 9.2 3.8 0.94 9.2 2.6 1.0 1 0 0 1 1 1 0 CoA-binding domain NPCBM_assoc PF10633.4 gi|385776690|ref|YP_005649258.1| - 2.9e-09 36.8 25.4 0.0039 17.2 0.0 8.4 9 1 1 10 10 10 5 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|385776690|ref|YP_005649258.1| - 0.0039 17.2 2.0 0.0039 17.2 1.4 7.8 7 1 0 8 8 8 3 CARDB Rifin_STEVOR PF02009.11 gi|385776690|ref|YP_005649258.1| - 0.16 11.5 7.4 0.24 11.0 5.1 1.2 1 0 0 1 1 1 0 Rifin/stevor family Transglut_C PF00927.17 gi|385776690|ref|YP_005649258.1| - 0.21 11.6 6.5 4.3 7.4 0.1 4.2 4 1 1 5 5 5 0 Transglutaminase family, C-terminal ig like domain Peptidase_M24 PF00557.19 gi|385776691|ref|YP_005649259.1| - 6.5e-56 189.1 0.1 8.2e-56 188.8 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|385776691|ref|YP_005649259.1| - 1.7e-17 64.1 0.0 3.2e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Hist_deacetyl PF00850.14 gi|385776692|ref|YP_005649260.1| - 3.1e-61 207.3 0.0 4.3e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF1374 PF07118.6 gi|385776692|ref|YP_005649260.1| - 5.8 7.1 7.3 0.26 11.4 0.2 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1374) OrfB_Zn_ribbon PF07282.6 gi|385776693|ref|YP_005649261.1| - 5.7e-22 77.1 0.3 1e-21 76.3 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|385776693|ref|YP_005649261.1| - 0.0079 15.3 2.6 1.3 8.2 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|385776693|ref|YP_005649261.1| - 0.01 15.6 0.2 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_methylase PF00145.12 gi|385776693|ref|YP_005649261.1| - 0.02 14.0 0.4 0.035 13.2 0.3 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase TF_Zn_Ribbon PF08271.7 gi|385776693|ref|YP_005649261.1| - 0.025 13.9 0.1 6.2 6.2 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_IS605 PF01385.14 gi|385776693|ref|YP_005649261.1| - 0.046 13.1 0.0 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 Probable transposase Ribosomal_S7 PF00177.16 gi|385776693|ref|YP_005649261.1| - 0.12 11.9 0.4 0.28 10.7 0.3 1.7 1 1 0 1 1 1 0 Ribosomal protein S7p/S5e zf-NADH-PPase PF09297.6 gi|385776693|ref|YP_005649261.1| - 0.24 10.9 1.8 8.6 5.9 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|385776693|ref|YP_005649261.1| - 0.44 10.1 2.7 12 5.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385776693|ref|YP_005649261.1| - 0.87 9.4 6.1 1.2 8.9 0.6 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GATase_6 PF13522.1 gi|385776694|ref|YP_005649262.1| - 2.7e-08 33.8 0.0 5.8e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|385776694|ref|YP_005649262.1| - 0.00019 20.2 0.0 0.00026 19.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Lactamase_B_2 PF12706.2 gi|385776695|ref|YP_005649263.1| - 7.1e-19 68.1 0.4 8.8e-19 67.8 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385776695|ref|YP_005649263.1| - 2.8e-09 36.8 0.1 8e-09 35.4 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|385776695|ref|YP_005649263.1| - 0.023 14.4 0.0 0.04 13.6 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain PfkB PF00294.19 gi|385776696|ref|YP_005649264.1| - 1.3e-57 195.2 2.0 1.7e-57 194.8 1.4 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|385776696|ref|YP_005649264.1| - 2e-10 40.2 0.0 3.4e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Phos_pyr_kin PF08543.7 gi|385776697|ref|YP_005649265.1| - 4.8e-77 258.4 0.1 6.1e-77 258.1 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|385776697|ref|YP_005649265.1| - 2e-13 50.1 0.0 4.3e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|385776697|ref|YP_005649265.1| - 7.1e-08 32.0 0.0 1.3e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate kinase HK97-gp10_like PF04883.7 gi|385776697|ref|YP_005649265.1| - 0.011 16.6 0.4 0.036 14.9 0.1 2.0 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component YebG PF07130.7 gi|385776697|ref|YP_005649265.1| - 0.02 14.5 0.6 0.062 12.9 0.2 2.0 2 0 0 2 2 2 0 YebG protein Clathrin PF00637.15 gi|385776697|ref|YP_005649265.1| - 0.22 11.1 1.9 4.9 6.7 0.1 2.8 2 1 1 3 3 3 0 Region in Clathrin and VPS PDDEXK_1 PF12705.2 gi|385776698|ref|YP_005649266.1| - 8e-15 54.9 0.4 4e-13 49.3 0.2 2.2 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|385776698|ref|YP_005649266.1| - 4.8e-10 39.5 0.2 6.1e-10 39.2 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.1 gi|385776698|ref|YP_005649266.1| - 1.8e-05 24.7 0.3 4.1e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1626 PF07788.6 gi|385776698|ref|YP_005649266.1| - 0.027 14.2 0.5 0.061 13.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1626) Dna2 PF08696.6 gi|385776698|ref|YP_005649266.1| - 0.07 12.4 0.0 0.24 10.6 0.0 1.8 1 1 0 1 1 1 0 DNA replication factor Dna2 Exo5 PF09810.4 gi|385776698|ref|YP_005649266.1| - 0.8 8.8 4.5 0.71 9.0 0.0 2.2 1 1 1 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease Glyco_tranf_2_3 PF13641.1 gi|385776699|ref|YP_005649267.1| - 9.2e-42 143.3 0.0 1.2e-41 143.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|385776699|ref|YP_005649267.1| - 7.8e-29 100.7 0.1 1.1e-28 100.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|385776699|ref|YP_005649267.1| - 5.7e-26 91.1 0.0 7.8e-26 90.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|385776699|ref|YP_005649267.1| - 7.7e-12 44.8 0.0 1.5e-11 43.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|385776699|ref|YP_005649267.1| - 6.1e-10 38.6 0.0 2.2e-09 36.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.9 gi|385776699|ref|YP_005649267.1| - 0.00015 20.2 4.7 0.0002 19.8 3.3 1.1 1 0 0 1 1 1 1 Cellulose synthase Glyco_tranf_2_4 PF13704.1 gi|385776699|ref|YP_005649267.1| - 0.0043 17.3 0.0 0.0069 16.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Anp1 PF03452.9 gi|385776699|ref|YP_005649267.1| - 0.12 11.5 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Anp1 Lactamase_B_2 PF12706.2 gi|385776701|ref|YP_005649269.1| - 7.2e-10 38.7 0.1 9.5e-10 38.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385776701|ref|YP_005649269.1| - 6.5e-09 35.7 1.4 8e-06 25.6 0.3 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|385776701|ref|YP_005649269.1| - 2.5e-06 27.2 0.1 3.9e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DHH PF01368.15 gi|385776701|ref|YP_005649269.1| - 0.031 13.9 0.0 0.031 13.9 0.0 2.3 2 1 0 2 2 2 0 DHH family VIT1 PF01988.14 gi|385776702|ref|YP_005649270.1| - 3.2e-50 170.5 2.7 3.8e-50 170.3 1.8 1.1 1 0 0 1 1 1 1 VIT family DUF2207 PF09972.4 gi|385776702|ref|YP_005649270.1| - 0.068 11.7 5.7 1.4 7.3 2.1 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) YqbF PF14553.1 gi|385776702|ref|YP_005649270.1| - 0.17 11.5 0.4 0.17 11.5 0.2 2.0 2 0 0 2 2 2 0 YqbF, hypothetical protein domain PGG PF13962.1 gi|385776702|ref|YP_005649270.1| - 0.3 10.7 2.1 0.91 9.1 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF1304 PF06993.7 gi|385776702|ref|YP_005649270.1| - 0.67 9.6 3.9 0.43 10.3 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1304) MerC PF03203.9 gi|385776702|ref|YP_005649270.1| - 2.8 8.3 8.2 6.1 7.2 0.2 2.4 2 0 0 2 2 2 0 MerC mercury resistance protein DUF1129 PF06570.6 gi|385776702|ref|YP_005649270.1| - 3.2 6.9 6.3 0.8 8.9 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) AAA_assoc_C PF09821.4 gi|385776703|ref|YP_005649271.1| - 1.2e-33 115.9 0.0 1.5e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain BPL_N PF09825.4 gi|385776703|ref|YP_005649271.1| - 0.048 12.4 0.0 0.058 12.1 0.0 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal Telomere_Sde2_2 PF13297.1 gi|385776703|ref|YP_005649271.1| - 0.082 12.1 0.2 2.9 7.2 0.0 2.4 2 0 0 2 2 2 0 Telomere stability C-terminal DUF956 PF06115.6 gi|385776703|ref|YP_005649271.1| - 0.1 12.1 0.1 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF956) HTH_45 PF14947.1 gi|385776703|ref|YP_005649271.1| - 0.12 12.2 1.1 0.25 11.1 0.1 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix LuxQ-periplasm PF09308.5 gi|385776704|ref|YP_005649272.1| - 0.04 13.2 0.1 0.042 13.1 0.0 1.0 1 0 0 1 1 1 0 LuxQ, periplasmic PaREP1 PF05942.6 gi|385776705|ref|YP_005649273.1| - 5.2e-06 26.3 0.0 1.2e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Aminotran_1_2 PF00155.16 gi|385776706|ref|YP_005649274.1| - 6e-30 104.4 0.0 6.7e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|385776706|ref|YP_005649274.1| - 2.2e-07 29.7 0.0 5.4e-07 28.5 0.0 1.5 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase RNase_Zc3h12a PF11977.3 gi|385776706|ref|YP_005649274.1| - 0.029 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain OCD_Mu_crystall PF02423.10 gi|385776707|ref|YP_005649275.1| - 5.7e-27 94.3 0.0 6.8e-27 94.0 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|385776707|ref|YP_005649275.1| - 0.00013 22.1 0.1 0.00021 21.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|385776707|ref|YP_005649275.1| - 0.00065 19.5 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DUF137 PF02006.11 gi|385776707|ref|YP_005649275.1| - 0.0023 17.3 0.2 0.11 11.9 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function DUF137 2-Hacid_dh_C PF02826.14 gi|385776707|ref|YP_005649275.1| - 0.027 13.6 0.0 0.06 12.5 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_11 PF08279.7 gi|385776708|ref|YP_005649276.1| - 1.3e-05 24.6 1.3 9.5e-05 21.9 0.0 2.3 2 1 0 2 2 2 1 HTH domain HTH_DeoR PF08220.7 gi|385776708|ref|YP_005649276.1| - 7.7e-05 22.1 0.1 0.00022 20.6 0.0 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|385776708|ref|YP_005649276.1| - 9.8e-05 21.6 0.1 9.8e-05 21.6 0.1 1.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|385776708|ref|YP_005649276.1| - 0.00043 19.9 0.1 0.0013 18.3 0.0 1.8 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|385776708|ref|YP_005649276.1| - 0.00089 19.1 0.4 0.0015 18.4 0.0 1.6 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|385776708|ref|YP_005649276.1| - 0.0012 18.5 0.5 0.0073 15.9 0.0 2.1 1 1 1 2 2 2 1 FeoC like transcriptional regulator Med9 PF07544.8 gi|385776708|ref|YP_005649276.1| - 0.002 17.8 4.4 0.32 10.7 1.9 2.2 2 0 0 2 2 2 2 RNA polymerase II transcription mediator complex subunit 9 MarR_2 PF12802.2 gi|385776708|ref|YP_005649276.1| - 0.003 17.1 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF4393 PF14337.1 gi|385776708|ref|YP_005649276.1| - 0.0094 15.4 0.5 0.011 15.1 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4393) DUF2250 PF10007.4 gi|385776708|ref|YP_005649276.1| - 0.014 15.2 0.4 0.014 15.2 0.3 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|385776708|ref|YP_005649276.1| - 0.015 14.8 0.7 0.026 14.0 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_5 PF01022.15 gi|385776708|ref|YP_005649276.1| - 0.022 14.4 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|385776708|ref|YP_005649276.1| - 0.035 13.8 0.4 0.088 12.5 0.0 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|385776708|ref|YP_005649276.1| - 0.039 13.7 0.0 0.092 12.5 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.1 gi|385776708|ref|YP_005649276.1| - 0.042 13.6 0.2 0.081 12.7 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|385776708|ref|YP_005649276.1| - 0.054 13.0 0.1 0.087 12.3 0.0 1.4 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Bap31 PF05529.7 gi|385776708|ref|YP_005649276.1| - 0.055 12.9 1.8 0.062 12.7 1.2 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like Rrf2 PF02082.15 gi|385776708|ref|YP_005649276.1| - 0.055 13.5 0.1 0.18 11.9 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator Fmp27_WPPW PF10359.4 gi|385776708|ref|YP_005649276.1| - 0.09 11.1 0.9 0.1 11.0 0.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4140 PF13600.1 gi|385776708|ref|YP_005649276.1| - 0.1 13.0 0.7 0.19 12.1 0.4 1.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Bacillus_HBL PF05791.6 gi|385776708|ref|YP_005649276.1| - 0.11 11.9 1.3 0.14 11.5 0.9 1.3 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Glycos_transf_2 PF00535.21 gi|385776709|ref|YP_005649277.1| - 2.4e-30 105.4 1.4 2.4e-30 105.4 0.3 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385776709|ref|YP_005649277.1| - 6.6e-10 39.1 0.0 7.7e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|385776709|ref|YP_005649277.1| - 3.9e-05 22.8 0.1 0.0001 21.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|385776709|ref|YP_005649277.1| - 0.0092 15.2 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|385776709|ref|YP_005649277.1| - 0.088 13.1 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF1947 PF09183.5 gi|385776710|ref|YP_005649278.1| - 5.9e-31 106.0 1.0 1.5e-30 104.7 0.7 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) PUA PF01472.15 gi|385776710|ref|YP_005649278.1| - 6e-16 57.9 0.2 1e-15 57.2 0.2 1.4 1 0 0 1 1 1 1 PUA domain DUF2001 PF09393.5 gi|385776710|ref|YP_005649278.1| - 0.11 12.1 0.4 2.1 8.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2001) Ald_Xan_dh_C2 PF02738.13 gi|385776711|ref|YP_005649279.1| - 9.1e-135 450.0 0.0 1.2e-134 449.7 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385776711|ref|YP_005649279.1| - 1.1e-12 47.9 0.0 6.3e-11 42.3 0.0 2.5 1 1 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PYNP_C PF07831.8 gi|385776711|ref|YP_005649279.1| - 0.052 13.0 0.0 0.17 11.3 0.0 1.8 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain Peptidase_M48 PF01435.13 gi|385776712|ref|YP_005649280.1| - 9.5e-21 74.3 5.9 2.8e-19 69.5 4.1 2.6 1 1 0 1 1 1 1 Peptidase family M48 DUF2268 PF10026.4 gi|385776712|ref|YP_005649280.1| - 0.022 14.1 0.1 0.061 12.6 0.1 1.6 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) DUF955 PF06114.8 gi|385776712|ref|YP_005649280.1| - 0.046 13.4 4.5 0.13 11.9 3.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF955) Peptidase_M56 PF05569.6 gi|385776712|ref|YP_005649280.1| - 0.066 12.1 1.5 0.12 11.3 0.6 1.9 1 1 0 1 1 1 0 BlaR1 peptidase M56 ADH_N PF08240.7 gi|385776713|ref|YP_005649281.1| - 3.6e-26 91.0 1.7 4.5e-26 90.7 0.3 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385776713|ref|YP_005649281.1| - 2.6e-20 72.3 0.1 4.6e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385776713|ref|YP_005649281.1| - 0.02 15.8 0.0 0.039 14.8 0.0 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase DUF4147 PF13660.1 gi|385776713|ref|YP_005649281.1| - 0.11 11.5 0.1 0.28 10.2 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4147) Fer4_8 PF13183.1 gi|385776713|ref|YP_005649281.1| - 0.15 12.1 0.4 0.15 12.1 0.3 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain CoA_binding PF02629.14 gi|385776713|ref|YP_005649281.1| - 0.15 12.5 1.4 0.57 10.7 0.5 2.2 1 1 1 2 2 2 0 CoA binding domain CobS PF02654.10 gi|385776714|ref|YP_005649282.1| - 5.2e-39 134.2 7.8 7.8e-39 133.6 5.4 1.3 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase GATase_3 PF07685.9 gi|385776715|ref|YP_005649283.1| - 1.3e-28 99.6 0.0 3.2e-28 98.3 0.0 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|385776715|ref|YP_005649283.1| - 2.4e-13 49.9 0.0 5.1e-13 48.8 0.0 1.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|385776715|ref|YP_005649283.1| - 5.3e-12 45.7 0.0 5e-07 29.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain GATase PF00117.23 gi|385776715|ref|YP_005649283.1| - 0.00017 21.0 0.0 0.0006 19.3 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|385776715|ref|YP_005649283.1| - 0.0016 18.1 0.0 0.0032 17.1 0.0 1.5 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.12 gi|385776715|ref|YP_005649283.1| - 0.0059 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S51 GMP_synt_C PF00958.17 gi|385776716|ref|YP_005649284.1| - 6e-28 96.4 0.1 1.6e-27 95.0 0.0 1.7 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|385776716|ref|YP_005649284.1| - 7.8e-13 47.8 0.2 5e-12 45.2 0.1 2.1 1 1 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.15 gi|385776716|ref|YP_005649284.1| - 7e-08 32.1 0.0 1.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|385776716|ref|YP_005649284.1| - 0.00093 17.8 0.0 0.11 11.0 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|385776716|ref|YP_005649284.1| - 0.001 18.4 0.0 0.026 13.8 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|385776716|ref|YP_005649284.1| - 0.0035 16.8 0.1 0.032 13.7 0.0 2.5 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|385776716|ref|YP_005649284.1| - 0.0044 16.5 0.0 0.011 15.3 0.0 1.7 1 0 0 1 1 1 1 Asparagine synthase DUF2392 PF10288.4 gi|385776716|ref|YP_005649284.1| - 0.014 15.7 0.0 0.048 14.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2392) DUF1152 PF06626.7 gi|385776716|ref|YP_005649284.1| - 0.056 12.5 0.1 0.18 10.9 0.0 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1152) Peptidase_M48 PF01435.13 gi|385776717|ref|YP_005649285.1| - 5.8e-28 97.9 0.1 3.1e-27 95.6 0.0 2.0 1 1 1 2 2 2 1 Peptidase family M48 Zn_peptidase_2 PF04298.7 gi|385776717|ref|YP_005649285.1| - 0.0032 16.8 0.1 0.0032 16.8 0.1 1.9 3 0 0 3 3 3 1 Putative neutral zinc metallopeptidase CBS PF00571.23 gi|385776718|ref|YP_005649286.1| - 9.4e-33 111.7 5.4 3.6e-16 58.6 0.1 2.0 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|385776718|ref|YP_005649286.1| - 0.055 13.5 0.1 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain DUF1840 PF08895.6 gi|385776718|ref|YP_005649286.1| - 0.11 12.5 0.0 2.3 8.3 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1840) Polysacc_synt_3 PF13440.1 gi|385776719|ref|YP_005649287.1| - 7.2e-19 68.2 36.0 7.2e-19 68.2 25.0 3.0 2 1 0 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|385776719|ref|YP_005649287.1| - 8.1e-07 28.5 35.4 8.1e-07 28.5 24.5 3.1 1 1 2 3 3 3 3 Polysaccharide biosynthesis protein BTP PF05232.7 gi|385776719|ref|YP_005649287.1| - 0.00015 21.4 2.0 0.00015 21.4 1.4 4.3 4 0 0 4 4 4 1 Bacterial Transmembrane Pair family DeoC PF01791.4 gi|385776720|ref|YP_005649288.1| - 5.1e-32 111.0 0.0 6e-32 110.8 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Peripla_BP_4 PF13407.1 gi|385776720|ref|YP_005649288.1| - 0.031 13.6 0.2 0.059 12.7 0.1 1.5 2 0 0 2 2 2 0 Periplasmic binding protein domain PMT_2 PF13231.1 gi|385776721|ref|YP_005649289.1| - 4.1e-09 36.5 14.8 4.1e-09 36.5 10.3 2.8 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2029 PF09594.5 gi|385776721|ref|YP_005649289.1| - 0.011 15.2 14.7 0.025 14.0 10.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2029) PMT PF02366.13 gi|385776721|ref|YP_005649289.1| - 0.51 9.6 38.7 0.011 15.1 11.7 4.4 2 1 2 4 4 4 0 Dolichyl-phosphate-mannose-protein mannosyltransferase AA_permease PF00324.16 gi|385776722|ref|YP_005649290.1| - 3.2e-21 75.2 54.1 7.6e-21 73.9 37.5 1.6 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|385776722|ref|YP_005649290.1| - 5.7e-16 58.0 63.0 6.8e-16 57.8 43.7 1.1 1 0 0 1 1 1 1 Amino acid permease NTP_transferase PF00483.18 gi|385776723|ref|YP_005649291.1| - 4.5e-28 98.2 0.0 5.6e-28 97.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385776723|ref|YP_005649291.1| - 3.3e-07 30.4 0.0 4.4e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain BcrAD_BadFG PF01869.15 gi|385776724|ref|YP_005649292.1| - 6e-53 179.8 0.8 6.9e-53 179.6 0.6 1.0 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family G_glu_transpept PF01019.16 gi|385776725|ref|YP_005649293.1| - 9.5e-108 360.8 0.0 1.1e-107 360.6 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase LpxC PF03331.8 gi|385776726|ref|YP_005649294.1| - 0.024 13.5 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 UDP-3-O-acyl N-acetylglycosamine deacetylase Pep_deformylase PF01327.16 gi|385776726|ref|YP_005649294.1| - 0.1 11.9 0.1 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Polypeptide deformylase DUF3529 PF12046.3 gi|385776726|ref|YP_005649294.1| - 0.13 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) PAP_fibrillin PF04755.7 gi|385776726|ref|YP_005649294.1| - 0.13 11.9 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 PAP_fibrillin MazG PF03819.12 gi|385776727|ref|YP_005649295.1| - 4.4e-15 55.3 0.3 6.1e-15 54.9 0.2 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|385776727|ref|YP_005649295.1| - 4e-05 23.7 0.2 4.5e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|385776727|ref|YP_005649295.1| - 0.00026 20.8 0.4 0.00045 20.0 0.1 1.5 1 1 1 2 2 2 1 MazG-like family Helicase_RecD PF05127.9 gi|385776728|ref|YP_005649296.1| - 1.9e-47 161.1 0.0 3.4e-47 160.3 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|385776728|ref|YP_005649296.1| - 1.3e-43 148.5 0.0 6.8e-43 146.2 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|385776728|ref|YP_005649296.1| - 3.2e-21 74.8 0.1 7e-21 73.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.1 gi|385776728|ref|YP_005649296.1| - 1.9e-06 27.9 0.0 6e-06 26.3 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|385776728|ref|YP_005649296.1| - 3.1e-06 27.1 0.0 1.5e-05 24.9 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family AAA_30 PF13604.1 gi|385776728|ref|YP_005649296.1| - 0.00051 19.6 0.1 0.00092 18.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain tRNA_bind_2 PF13725.1 gi|385776728|ref|YP_005649296.1| - 0.00064 19.7 0.0 0.0018 18.3 0.0 1.7 1 1 0 1 1 1 1 Possible tRNA binding domain DEAD PF00270.24 gi|385776728|ref|YP_005649296.1| - 0.049 13.1 0.0 0.17 11.3 0.0 2.0 1 0 0 1 1 1 0 DEAD/DEAH box helicase DUF1129 PF06570.6 gi|385776729|ref|YP_005649297.1| - 8.1 5.6 14.9 1.7 7.8 1.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1129) NMN_transporter PF04973.7 gi|385776730|ref|YP_005649298.1| - 0.41 10.0 8.9 0.57 9.6 6.2 1.4 1 1 0 1 1 1 0 Nicotinamide mononucleotide transporter Tic20 PF09685.5 gi|385776730|ref|YP_005649298.1| - 3.4 7.6 9.9 0.52 10.3 3.3 1.9 2 0 0 2 2 2 0 Tic20-like protein Aminotran_3 PF00202.16 gi|385776731|ref|YP_005649299.1| - 1.1e-100 336.8 0.0 1.2e-100 336.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III TPP_enzyme_N PF02776.13 gi|385776732|ref|YP_005649300.1| - 2.7e-42 144.1 0.0 7.2e-42 142.7 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|385776732|ref|YP_005649300.1| - 7e-11 41.9 0.0 2.1e-10 40.3 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|385776732|ref|YP_005649300.1| - 4.8e-06 26.3 0.0 7.5e-05 22.5 0.0 2.6 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Aldo_ket_red PF00248.16 gi|385776733|ref|YP_005649301.1| - 1.4e-72 243.8 0.2 1.6e-72 243.7 0.1 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RTP PF02334.11 gi|385776733|ref|YP_005649301.1| - 0.12 12.3 0.1 0.72 9.8 0.0 2.3 3 0 0 3 3 3 0 Replication terminator protein DUF1446 PF07287.6 gi|385776733|ref|YP_005649301.1| - 0.12 10.8 0.1 0.86 8.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1446) Pkinase PF00069.20 gi|385776734|ref|YP_005649302.1| - 7.3e-25 87.5 0.0 1.1e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|385776734|ref|YP_005649302.1| - 7.3e-12 44.8 0.1 2.5e-11 43.1 0.0 2.0 2 1 0 2 2 2 1 Protein tyrosine kinase Apc3 PF12895.2 gi|385776734|ref|YP_005649302.1| - 8.1e-11 41.9 0.8 2.4e-07 30.8 0.1 2.6 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.1 gi|385776734|ref|YP_005649302.1| - 4.8e-08 33.4 1.0 0.00043 20.8 0.0 4.1 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|385776734|ref|YP_005649302.1| - 9e-06 25.2 0.4 0.00037 20.0 0.0 3.4 3 1 0 3 3 3 1 TPR repeat TPR_19 PF14559.1 gi|385776734|ref|YP_005649302.1| - 1.1e-05 25.6 0.0 0.0018 18.5 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|385776734|ref|YP_005649302.1| - 2e-05 24.1 8.1 0.0036 17.0 0.0 4.7 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|385776734|ref|YP_005649302.1| - 0.00022 20.7 3.7 0.028 14.0 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385776734|ref|YP_005649302.1| - 0.00058 20.2 0.0 0.36 11.5 0.0 3.4 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|385776734|ref|YP_005649302.1| - 0.0016 18.0 0.1 0.92 9.4 0.0 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|385776734|ref|YP_005649302.1| - 0.0022 17.9 0.1 1.1 9.3 0.0 3.1 2 1 1 3 3 3 1 Tetratricopeptide repeat APH PF01636.18 gi|385776734|ref|YP_005649302.1| - 0.01 15.6 0.0 2.6 7.7 0.0 2.5 1 1 1 2 2 2 0 Phosphotransferase enzyme family TPR_6 PF13174.1 gi|385776734|ref|YP_005649302.1| - 0.021 15.2 0.7 11 6.6 0.0 4.5 3 1 1 4 4 4 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|385776734|ref|YP_005649302.1| - 0.23 11.3 4.9 0.85 9.5 0.0 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat Pirin_C PF05726.8 gi|385776735|ref|YP_005649303.1| - 0.044 13.8 0.0 0.052 13.6 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Ribonuc_L-PSP PF01042.16 gi|385776736|ref|YP_005649304.1| - 5.1e-42 142.4 0.0 5.6e-42 142.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Pox_J1 PF03338.10 gi|385776736|ref|YP_005649304.1| - 0.072 12.7 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 Poxvirus J1 protein CBS PF00571.23 gi|385776737|ref|YP_005649305.1| - 2e-41 139.5 12.7 1.2e-11 44.2 0.3 4.2 4 0 0 4 4 4 4 CBS domain ADH_N PF08240.7 gi|385776738|ref|YP_005649306.1| - 2.7e-23 81.7 0.2 4.5e-23 81.0 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385776738|ref|YP_005649306.1| - 0.0014 18.1 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.14 gi|385776738|ref|YP_005649306.1| - 0.0087 15.1 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain DapB_N PF01113.15 gi|385776738|ref|YP_005649306.1| - 0.022 14.6 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AMP-binding PF00501.23 gi|385776739|ref|YP_005649307.1| - 3.1e-85 286.0 0.0 4e-85 285.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385776739|ref|YP_005649307.1| - 2.6e-21 76.3 0.7 6.5e-21 75.0 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Molydop_binding PF01568.16 gi|385776739|ref|YP_005649307.1| - 0.1 12.4 0.2 17 5.3 0.0 2.5 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain Voltage_CLC PF00654.15 gi|385776740|ref|YP_005649308.1| - 6.4e-90 301.7 30.1 6.4e-90 301.7 20.8 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|385776740|ref|YP_005649308.1| - 2.6e-18 65.5 0.5 4.7e-08 32.6 0.0 2.6 3 0 0 3 3 3 2 CBS domain Oxidored_molyb PF00174.14 gi|385776741|ref|YP_005649309.1| - 1.1e-45 155.0 0.0 1.4e-45 154.7 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain PsiE PF06146.7 gi|385776742|ref|YP_005649310.1| - 2.5e-05 24.4 2.8 6e-05 23.1 1.9 1.6 1 0 0 1 1 1 1 Phosphate-starvation-inducible E MR_MLE_C PF13378.1 gi|385776743|ref|YP_005649311.1| - 7.2e-20 71.0 0.0 1.2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|385776743|ref|YP_005649311.1| - 1.3e-14 54.1 0.0 2.7e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|385776743|ref|YP_005649311.1| - 3.4e-14 53.1 0.1 4e-13 49.6 0.0 2.5 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DHDPS PF00701.17 gi|385776744|ref|YP_005649312.1| - 1.2e-42 145.4 0.0 1.5e-42 145.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PfkB PF00294.19 gi|385776745|ref|YP_005649313.1| - 2.6e-39 135.1 0.0 3.2e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Aldedh PF00171.17 gi|385776746|ref|YP_005649314.1| - 1.3e-113 379.8 0.0 1.5e-113 379.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|385776746|ref|YP_005649314.1| - 6.7e-08 31.6 0.0 1.3e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Repressor_Mnt PF11423.3 gi|385776746|ref|YP_005649314.1| - 3.6 6.9 6.7 18 4.7 0.4 2.8 2 0 0 2 2 2 0 Regulatory protein Mnt Na_Ca_ex PF01699.19 gi|385776747|ref|YP_005649315.1| - 1.4e-32 112.2 33.1 3.2e-20 72.1 7.2 2.5 2 1 1 3 3 3 2 Sodium/calcium exchanger protein Molybdopterin PF00384.17 gi|385776748|ref|YP_005649316.1| - 6.1e-12 44.9 0.0 1.3e-06 27.4 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385776748|ref|YP_005649316.1| - 0.12 12.2 0.0 2.7 7.8 0.0 2.7 2 1 0 2 2 2 0 Molydopterin dinucleotide binding domain DUF1404 PF07185.6 gi|385776749|ref|YP_005649317.1| - 3.3e-21 75.6 8.2 3.8e-21 75.3 5.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) SecE PF00584.15 gi|385776749|ref|YP_005649317.1| - 0.011 15.3 0.4 0.035 13.6 0.3 1.8 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Ferric_reduct PF01794.14 gi|385776749|ref|YP_005649317.1| - 0.088 12.8 2.0 0.19 11.8 1.4 1.7 1 1 0 1 1 1 0 Ferric reductase like transmembrane component HTH_24 PF13412.1 gi|385776750|ref|YP_005649318.1| - 1.2e-06 27.7 0.1 2.6e-06 26.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385776750|ref|YP_005649318.1| - 1.4e-06 27.8 0.2 4.1e-06 26.3 0.1 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|385776750|ref|YP_005649318.1| - 2.3e-06 27.2 0.0 5.5e-06 25.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|385776750|ref|YP_005649318.1| - 9.9e-06 25.1 0.1 2.5e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 MarR family FaeA PF04703.7 gi|385776750|ref|YP_005649318.1| - 3e-05 24.0 0.0 6.7e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein MarR_2 PF12802.2 gi|385776750|ref|YP_005649318.1| - 4.1e-05 23.1 0.0 7.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|385776750|ref|YP_005649318.1| - 6e-05 22.7 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|385776750|ref|YP_005649318.1| - 0.00045 19.7 0.0 0.00089 18.7 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain PadR PF03551.9 gi|385776750|ref|YP_005649318.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|385776750|ref|YP_005649318.1| - 0.0014 18.6 0.1 0.0033 17.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|385776750|ref|YP_005649318.1| - 0.0035 16.8 0.0 0.0081 15.6 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|385776750|ref|YP_005649318.1| - 0.0049 17.1 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|385776750|ref|YP_005649318.1| - 0.01 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain z-alpha PF02295.12 gi|385776750|ref|YP_005649318.1| - 0.013 15.2 1.2 0.032 13.9 0.1 2.4 3 1 1 4 4 3 0 Adenosine deaminase z-alpha domain HTH_Crp_2 PF13545.1 gi|385776750|ref|YP_005649318.1| - 0.016 14.9 0.0 0.15 11.8 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|385776750|ref|YP_005649318.1| - 0.017 14.7 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HxlR PF01638.12 gi|385776750|ref|YP_005649318.1| - 0.017 14.7 0.0 0.043 13.4 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF387 PF04079.11 gi|385776750|ref|YP_005649318.1| - 0.036 13.4 0.0 0.068 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Sulfolobus_pRN PF05584.6 gi|385776750|ref|YP_005649318.1| - 0.039 13.9 0.2 0.084 12.8 0.2 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF4422 PF14393.1 gi|385776750|ref|YP_005649318.1| - 0.069 12.7 0.1 0.069 12.7 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4422) AA_permease_2 PF13520.1 gi|385776753|ref|YP_005649321.1| - 4.4e-38 130.9 63.5 6.4e-38 130.3 44.0 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385776753|ref|YP_005649321.1| - 3.9e-07 28.7 55.2 5.8e-07 28.2 38.3 1.2 1 0 0 1 1 1 1 Amino acid permease HTH_45 PF14947.1 gi|385776754|ref|YP_005649322.1| - 6.8e-09 35.4 2.1 1e-08 34.8 1.5 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|385776754|ref|YP_005649322.1| - 4.7e-07 29.3 0.7 7.1e-07 28.7 0.3 1.4 1 1 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|385776754|ref|YP_005649322.1| - 2.7e-06 26.6 0.8 4.7e-06 25.8 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|385776754|ref|YP_005649322.1| - 3.3e-06 26.7 0.2 5.1e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385776754|ref|YP_005649322.1| - 6.1e-06 25.7 0.0 9.2e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|385776754|ref|YP_005649322.1| - 2.4e-05 23.8 0.1 3.7e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_12 PF08461.5 gi|385776754|ref|YP_005649322.1| - 3.6e-05 23.3 1.5 6.2e-05 22.6 1.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|385776754|ref|YP_005649322.1| - 4.5e-05 23.1 0.0 6.9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|385776754|ref|YP_005649322.1| - 0.00011 22.1 0.0 0.00021 21.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|385776754|ref|YP_005649322.1| - 0.00018 20.8 0.1 0.00031 20.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family SelB-wing_3 PF09107.6 gi|385776754|ref|YP_005649322.1| - 0.0002 20.7 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor SelB, winged helix HTH_DeoR PF08220.7 gi|385776754|ref|YP_005649322.1| - 0.00026 20.4 0.2 0.00055 19.4 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|385776754|ref|YP_005649322.1| - 0.00029 20.5 0.0 0.00048 19.8 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|385776754|ref|YP_005649322.1| - 0.0003 20.3 0.0 0.00048 19.7 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|385776754|ref|YP_005649322.1| - 0.00049 19.7 0.3 0.0014 18.2 0.1 1.7 2 0 0 2 2 2 1 MarR family Sulfolobus_pRN PF05584.6 gi|385776754|ref|YP_005649322.1| - 0.0012 18.8 0.3 0.0018 18.1 0.2 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein GerE PF00196.14 gi|385776754|ref|YP_005649322.1| - 0.0013 17.9 0.0 0.0026 17.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|385776754|ref|YP_005649322.1| - 0.0022 17.6 0.3 0.0037 16.8 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|385776754|ref|YP_005649322.1| - 0.0024 17.7 0.2 0.005 16.7 0.1 1.5 1 1 1 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|385776754|ref|YP_005649322.1| - 0.0035 17.4 0.1 0.0045 17.0 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|385776754|ref|YP_005649322.1| - 0.0037 16.8 0.1 0.005 16.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) FaeA PF04703.7 gi|385776754|ref|YP_005649322.1| - 0.0038 17.3 0.0 0.0061 16.6 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein DUF505 PF04458.7 gi|385776754|ref|YP_005649322.1| - 0.0057 14.8 0.2 0.0065 14.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_27 PF13463.1 gi|385776754|ref|YP_005649322.1| - 0.0079 16.5 0.1 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|385776754|ref|YP_005649322.1| - 0.0085 15.6 0.0 0.017 14.6 0.0 1.5 1 1 1 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|385776754|ref|YP_005649322.1| - 0.009 15.8 0.3 0.009 15.8 0.2 2.1 2 1 0 2 2 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Mga PF08280.6 gi|385776754|ref|YP_005649322.1| - 0.0095 15.6 0.2 0.019 14.7 0.1 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain B-block_TFIIIC PF04182.7 gi|385776754|ref|YP_005649322.1| - 0.0098 15.7 2.0 0.066 13.0 0.1 2.2 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC SgrR_N PF12793.2 gi|385776754|ref|YP_005649322.1| - 0.01 15.8 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term Replic_Relax PF13814.1 gi|385776754|ref|YP_005649322.1| - 0.012 15.5 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation RPA_C PF08784.6 gi|385776754|ref|YP_005649322.1| - 0.023 15.0 0.0 0.034 14.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal Ribosomal_S19e PF01090.14 gi|385776754|ref|YP_005649322.1| - 0.025 14.0 0.0 0.036 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S19e FeoC PF09012.5 gi|385776754|ref|YP_005649322.1| - 0.028 14.0 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF3116 PF11313.3 gi|385776754|ref|YP_005649322.1| - 0.032 13.8 0.6 0.059 12.9 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) DUF4393 PF14337.1 gi|385776754|ref|YP_005649322.1| - 0.033 13.6 0.3 0.041 13.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) HTH_29 PF13551.1 gi|385776754|ref|YP_005649322.1| - 0.034 14.2 0.0 0.044 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|385776754|ref|YP_005649322.1| - 0.057 12.7 0.3 0.59 9.4 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|385776754|ref|YP_005649322.1| - 0.068 13.1 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.11 gi|385776754|ref|YP_005649322.1| - 0.074 12.2 0.0 0.093 11.8 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family Mrr_N PF14338.1 gi|385776754|ref|YP_005649322.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain TFIIE_alpha PF02002.12 gi|385776754|ref|YP_005649322.1| - 0.1 12.0 0.5 0.15 11.5 0.4 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit 2-Hacid_dh_C PF02826.14 gi|385776755|ref|YP_005649323.1| - 3.5e-32 110.9 0.0 4.8e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|385776755|ref|YP_005649323.1| - 3.1e-18 65.5 0.0 3.7e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_7 PF13241.1 gi|385776755|ref|YP_005649323.1| - 0.017 15.3 0.7 1.2 9.4 0.1 2.5 2 1 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.7 gi|385776755|ref|YP_005649323.1| - 0.084 12.2 0.1 0.94 8.8 0.0 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF2299 PF10061.4 gi|385776756|ref|YP_005649324.1| - 1.1e-52 177.1 0.0 1.2e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) AA_permease_2 PF13520.1 gi|385776758|ref|YP_005649326.1| - 3.7e-18 65.2 47.8 3.7e-18 65.2 33.1 1.9 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|385776758|ref|YP_005649326.1| - 3e-17 62.1 43.4 3e-17 62.1 30.1 1.9 1 1 1 2 2 2 1 Amino acid permease Usp PF00582.21 gi|385776759|ref|YP_005649327.1| - 1.6e-27 96.4 0.1 1.7e-27 96.2 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family SapB_1 PF05184.10 gi|385776759|ref|YP_005649327.1| - 0.16 11.8 2.0 0.34 10.8 0.2 2.3 2 0 0 2 2 2 0 Saposin-like type B, region 1 Pkinase PF00069.20 gi|385776760|ref|YP_005649328.1| - 3e-28 98.6 0.0 4.7e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|385776760|ref|YP_005649328.1| - 1.7e-09 37.1 0.0 3.5e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Protein tyrosine kinase DUF1955 PF09205.5 gi|385776760|ref|YP_005649328.1| - 7.1 6.1 11.1 1.4e+02 1.9 7.7 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1955) Sugar_tr PF00083.19 gi|385776762|ref|YP_005649330.1| - 3.5e-50 170.8 23.0 4.3e-50 170.6 15.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|385776762|ref|YP_005649330.1| - 1.6e-28 99.4 35.3 4.9e-27 94.5 22.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily BT1 PF03092.11 gi|385776762|ref|YP_005649330.1| - 5.4 5.5 13.3 70 1.9 9.2 2.3 1 1 0 1 1 1 0 BT1 family DUF4322 PF14210.1 gi|385776763|ref|YP_005649331.1| - 3.7e-25 87.1 0.1 9.1e-25 85.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) DDE_5 PF13546.1 gi|385776763|ref|YP_005649331.1| - 0.0025 16.6 0.0 0.005 15.7 0.0 1.4 2 0 0 2 2 2 1 DDE superfamily endonuclease PepSY_2 PF13670.1 gi|385776763|ref|YP_005649331.1| - 0.0028 17.5 0.0 2.1 8.3 0.0 2.3 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain OrfB_IS605 PF01385.14 gi|385776764|ref|YP_005649332.1| - 7.7e-27 94.1 6.7 9.8e-27 93.8 4.7 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385776764|ref|YP_005649332.1| - 8e-24 83.0 0.0 1.7e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385776764|ref|YP_005649332.1| - 0.024 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385776764|ref|YP_005649332.1| - 0.06 12.9 0.6 0.68 9.5 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385776764|ref|YP_005649332.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|385776764|ref|YP_005649332.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385776764|ref|YP_005649332.1| - 0.29 10.9 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385776764|ref|YP_005649332.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385776764|ref|YP_005649332.1| - 6.9 6.6 5.4 5 7.0 0.4 3.1 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Sorting_nexin PF03700.8 gi|385776765|ref|YP_005649333.1| - 0.077 13.1 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Sorting nexin, N-terminal domain DUF1439 PF07273.7 gi|385776765|ref|YP_005649333.1| - 0.12 12.0 0.2 11 5.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1439) ATP-cone PF03477.11 gi|385776766|ref|YP_005649334.1| - 6.6e-05 23.2 0.1 8.7e-05 22.8 0.1 1.2 1 1 0 1 1 1 1 ATP cone domain DUF772 PF05598.6 gi|385776767|ref|YP_005649335.1| - 0.00022 21.0 0.0 0.00066 19.5 0.0 1.8 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|385776767|ref|YP_005649335.1| - 0.0056 16.2 0.0 0.043 13.3 0.0 2.0 1 1 1 2 2 2 1 Transposase DDE domain PQQ_3 PF13570.1 gi|385776768|ref|YP_005649336.1| - 0.14 12.4 0.1 12 6.3 0.0 2.2 2 0 0 2 2 2 0 PQQ-like domain Imm31 PF15595.1 gi|385776769|ref|YP_005649337.1| - 0.0046 16.6 0.5 0.011 15.4 0.3 1.6 1 1 0 1 1 1 1 Immunity protein 31 IF2_N PF04760.10 gi|385776769|ref|YP_005649337.1| - 0.015 14.9 0.7 5.7 6.6 0.1 2.6 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region PIN PF01850.16 gi|385776771|ref|YP_005649339.1| - 1.5e-09 38.2 0.0 1.6e-09 38.1 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|385776773|ref|YP_005649341.1| - 1.9e-07 31.4 0.7 2.6e-07 30.9 0.5 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|385776773|ref|YP_005649341.1| - 0.0011 19.6 0.1 0.0036 17.9 0.0 1.8 1 1 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|385776774|ref|YP_005649342.1| - 1.9e-13 49.7 0.2 2.8e-13 49.2 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE SymE_toxin PF08845.5 gi|385776774|ref|YP_005649342.1| - 0.004 16.9 0.1 0.0064 16.3 0.0 1.3 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Rap1-DNA-bind PF09197.5 gi|385776775|ref|YP_005649343.1| - 0.0083 16.6 0.6 0.01 16.3 0.4 1.1 1 0 0 1 1 1 1 Rap1, DNA-binding RHH_1 PF01402.16 gi|385776775|ref|YP_005649343.1| - 0.15 11.9 0.3 0.15 11.9 0.2 2.9 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family Post_transc_reg PF13797.1 gi|385776775|ref|YP_005649343.1| - 0.26 10.8 4.0 0.53 9.9 2.7 1.7 1 1 0 1 1 1 0 Post-transcriptional regulator CcdA PF07362.7 gi|385776775|ref|YP_005649343.1| - 2.4 8.1 5.5 0.71 9.7 1.9 1.6 1 1 1 2 2 2 0 Post-segregation antitoxin CcdA PIN PF01850.16 gi|385776776|ref|YP_005649344.1| - 1.4e-09 38.2 0.1 1.6e-09 38.1 0.0 1.0 1 0 0 1 1 1 1 PIN domain VMA21 PF09446.5 gi|385776777|ref|YP_005649345.1| - 0.064 13.1 0.4 0.065 13.1 0.3 1.1 1 0 0 1 1 1 0 VMA21-like domain TaqI_C PF12950.2 gi|385776778|ref|YP_005649346.1| - 0.00084 19.0 0.3 0.001 18.8 0.2 1.0 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain HxlR PF01638.12 gi|385776779|ref|YP_005649347.1| - 5.3e-22 77.2 0.4 7e-22 76.8 0.3 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|385776779|ref|YP_005649347.1| - 0.00016 21.6 0.2 0.00039 20.4 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|385776779|ref|YP_005649347.1| - 0.0012 18.8 0.1 0.0024 17.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|385776779|ref|YP_005649347.1| - 0.0014 18.9 0.1 0.0038 17.5 0.1 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385776779|ref|YP_005649347.1| - 0.0014 18.2 0.1 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|385776779|ref|YP_005649347.1| - 0.0015 18.2 0.2 0.002 17.8 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|385776779|ref|YP_005649347.1| - 0.0032 17.2 0.3 0.0049 16.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|385776779|ref|YP_005649347.1| - 0.0034 17.0 0.5 0.0065 16.1 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|385776779|ref|YP_005649347.1| - 0.0043 16.8 0.0 0.011 15.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385776779|ref|YP_005649347.1| - 0.0051 16.1 0.2 0.0088 15.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF505 PF04458.7 gi|385776779|ref|YP_005649347.1| - 0.0053 14.9 0.1 0.0053 14.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) TrmB PF01978.14 gi|385776779|ref|YP_005649347.1| - 0.017 14.8 0.1 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ALS_ss_C PF10369.4 gi|385776779|ref|YP_005649347.1| - 0.018 14.7 0.1 0.62 9.8 0.0 2.3 1 1 1 2 2 2 0 Small subunit of acetolactate synthase Sulfolobus_pRN PF05584.6 gi|385776779|ref|YP_005649347.1| - 0.052 13.5 0.2 0.095 12.6 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein RepL PF05732.6 gi|385776779|ref|YP_005649347.1| - 0.056 12.6 0.1 0.058 12.6 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) LexA_DNA_bind PF01726.11 gi|385776779|ref|YP_005649347.1| - 0.058 12.9 0.1 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain PolyA_pol_RNAbd PF12627.2 gi|385776779|ref|YP_005649347.1| - 0.11 12.0 0.8 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 Probable RNA and SrmB- binding site of polymerase A NSs PF11073.3 gi|385776780|ref|YP_005649348.1| - 0.0091 15.2 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 1 Rift valley fever virus non structural protein (NSs) like CBS PF00571.23 gi|385776781|ref|YP_005649349.1| - 1.6e-32 111.0 3.4 1e-16 60.4 0.3 2.0 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.11 gi|385776781|ref|YP_005649349.1| - 0.00036 20.4 2.6 0.043 13.7 0.1 3.0 2 2 1 3 3 3 2 Translation initiation factor IF-3, N-terminal domain DUF1840 PF08895.6 gi|385776781|ref|YP_005649349.1| - 0.057 13.4 0.7 0.47 10.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) NUMOD1 PF07453.8 gi|385776781|ref|YP_005649349.1| - 0.066 13.0 0.9 13 5.8 0.0 2.5 2 0 0 2 2 2 0 NUMOD1 domain UPF0066 PF01980.11 gi|385776782|ref|YP_005649350.1| - 7.6e-34 116.2 0.0 9.6e-34 115.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 ABC_tran PF00005.22 gi|385776783|ref|YP_005649351.1| - 4.7e-24 85.2 0.1 7e-24 84.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385776783|ref|YP_005649351.1| - 2e-12 47.7 0.3 5.8e-08 33.0 0.0 2.5 3 0 0 3 3 3 2 AAA domain NB-ARC PF00931.17 gi|385776783|ref|YP_005649351.1| - 0.0011 17.9 0.2 0.0081 15.0 0.1 2.0 1 1 0 1 1 1 1 NB-ARC domain SMC_N PF02463.14 gi|385776783|ref|YP_005649351.1| - 0.0025 17.0 0.1 0.18 11.0 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|385776783|ref|YP_005649351.1| - 0.0052 16.3 0.1 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|385776783|ref|YP_005649351.1| - 0.007 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|385776783|ref|YP_005649351.1| - 0.0072 14.8 0.1 0.012 14.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385776783|ref|YP_005649351.1| - 0.0074 16.4 0.1 0.019 15.1 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|385776783|ref|YP_005649351.1| - 0.011 14.7 0.1 1.5 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|385776783|ref|YP_005649351.1| - 0.015 15.6 0.1 0.026 14.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|385776783|ref|YP_005649351.1| - 0.015 14.8 0.1 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385776783|ref|YP_005649351.1| - 0.016 15.3 0.1 0.036 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|385776783|ref|YP_005649351.1| - 0.023 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.12 gi|385776783|ref|YP_005649351.1| - 0.025 13.9 0.1 0.069 12.5 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|385776783|ref|YP_005649351.1| - 0.031 14.6 0.6 0.043 14.1 0.4 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|385776783|ref|YP_005649351.1| - 0.033 13.2 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.11 gi|385776783|ref|YP_005649351.1| - 0.083 12.1 0.1 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein SbcCD_C PF13558.1 gi|385776783|ref|YP_005649351.1| - 0.1 12.5 0.0 0.86 9.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|385776783|ref|YP_005649351.1| - 0.11 13.3 0.3 0.21 12.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|385776783|ref|YP_005649351.1| - 0.13 11.9 0.6 0.55 9.8 0.1 2.1 2 1 0 2 2 2 0 NACHT domain AAA_16 PF13191.1 gi|385776783|ref|YP_005649351.1| - 0.14 12.1 0.2 0.16 11.9 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane_3 PF12698.2 gi|385776784|ref|YP_005649352.1| - 2.9e-06 26.5 31.2 2.9e-06 26.5 21.6 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|385776784|ref|YP_005649352.1| - 3.5e-05 23.0 25.6 3.5e-05 23.0 17.7 2.3 1 1 1 2 2 2 1 ABC-2 type transporter TMEM138 PF14935.1 gi|385776784|ref|YP_005649352.1| - 2 8.7 8.2 2.9 8.2 0.4 2.7 2 1 0 2 2 2 0 Transmembrane protein 138 NUDIX PF00293.23 gi|385776786|ref|YP_005649354.1| - 5.7e-19 68.0 0.0 7.5e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|385776786|ref|YP_005649354.1| - 0.012 14.9 0.0 0.019 14.4 0.0 1.4 1 1 0 1 1 1 0 NUDIX domain OrfB_IS605 PF01385.14 gi|385776787|ref|YP_005649355.1| - 1e-26 93.7 6.6 1.3e-26 93.4 4.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385776787|ref|YP_005649355.1| - 8e-24 83.0 0.0 1.7e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HxlR PF01638.12 gi|385776787|ref|YP_005649355.1| - 0.023 14.3 0.4 0.28 10.8 0.1 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix TF_Zn_Ribbon PF08271.7 gi|385776787|ref|YP_005649355.1| - 0.024 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|385776787|ref|YP_005649355.1| - 0.086 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|385776787|ref|YP_005649355.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385776787|ref|YP_005649355.1| - 0.29 10.9 0.8 9 6.1 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385776787|ref|YP_005649355.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385776787|ref|YP_005649355.1| - 7 6.5 5.4 5 7.0 0.4 3.1 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_44 PF14641.1 gi|385776789|ref|YP_005649357.1| - 0.068 13.1 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix DNA-binding domain of SPT6 FAD_binding_4 PF01565.18 gi|385776790|ref|YP_005649358.1| - 9.3e-22 77.0 0.0 1.7e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.14 gi|385776790|ref|YP_005649358.1| - 0.0037 16.6 0.0 0.0064 15.8 0.0 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain BBE PF08031.7 gi|385776790|ref|YP_005649358.1| - 0.025 14.4 0.1 0.057 13.3 0.0 1.6 1 0 0 1 1 1 0 Berberine and berberine like FAD-oxidase_C PF02913.14 gi|385776791|ref|YP_005649359.1| - 1.1e-61 208.3 0.0 1.5e-61 207.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|385776791|ref|YP_005649359.1| - 1.1e-33 115.6 0.0 2.3e-33 114.5 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|385776792|ref|YP_005649360.1| - 2.5e-11 43.4 7.1 2.4e-06 27.4 0.0 3.0 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_7 PF12838.2 gi|385776792|ref|YP_005649360.1| - 7.9e-11 42.1 8.4 1.9e-10 40.9 5.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385776792|ref|YP_005649360.1| - 1.3e-10 41.4 6.1 4.4e-10 39.7 4.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385776792|ref|YP_005649360.1| - 3e-10 39.9 7.7 1.5e-09 37.7 5.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385776792|ref|YP_005649360.1| - 9.5e-09 34.4 9.6 0.00043 19.7 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385776792|ref|YP_005649360.1| - 1e-08 34.8 1.8 0.0024 17.6 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385776792|ref|YP_005649360.1| - 2.8e-06 26.9 12.3 0.0093 15.8 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385776792|ref|YP_005649360.1| - 6.1e-05 23.3 8.2 0.042 14.2 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385776792|ref|YP_005649360.1| - 0.0003 20.5 13.6 0.007 16.1 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385776792|ref|YP_005649360.1| - 0.00037 20.6 10.9 0.042 14.1 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385776792|ref|YP_005649360.1| - 0.0013 18.9 15.7 0.0036 17.5 8.7 2.9 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385776792|ref|YP_005649360.1| - 0.0031 18.2 10.1 0.025 15.2 6.2 2.8 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|385776792|ref|YP_005649360.1| - 0.0086 15.9 13.0 0.3 10.9 9.2 2.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Colicin PF01024.14 gi|385776792|ref|YP_005649360.1| - 0.014 14.9 0.5 0.26 10.8 0.1 2.3 2 0 0 2 2 2 0 Colicin pore forming domain Fer4_13 PF13370.1 gi|385776792|ref|YP_005649360.1| - 0.023 15.0 5.4 1.3 9.4 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|385776792|ref|YP_005649360.1| - 0.047 14.2 5.4 3.9 8.1 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF309 PF03745.9 gi|385776792|ref|YP_005649360.1| - 0.06 12.8 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF309) Fer4_20 PF14691.1 gi|385776792|ref|YP_005649360.1| - 0.27 10.8 5.6 0.35 10.5 0.1 2.9 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|385776792|ref|YP_005649360.1| - 1.2 9.8 20.6 0.55 10.9 3.0 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain BPL_LplA_LipB PF03099.14 gi|385776793|ref|YP_005649361.1| - 7.4e-14 51.8 0.0 1.5e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.16 gi|385776794|ref|YP_005649362.1| - 2.1e-16 60.5 0.1 7.1e-16 58.8 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily BPL_LplA_LipB PF03099.14 gi|385776795|ref|YP_005649363.1| - 2e-16 60.1 0.2 3.5e-16 59.3 0.1 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family FMN_red PF03358.10 gi|385776796|ref|YP_005649364.1| - 7.3e-17 61.2 0.0 9.3e-17 60.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|385776796|ref|YP_005649364.1| - 1.9e-05 24.7 0.0 3.1e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_2 PF02525.12 gi|385776796|ref|YP_005649364.1| - 0.00041 19.9 0.0 0.00062 19.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_1 PF00258.20 gi|385776796|ref|YP_005649364.1| - 0.021 14.8 0.3 0.31 11.0 0.2 2.3 1 1 0 1 1 1 0 Flavodoxin DsbD PF02683.10 gi|385776797|ref|YP_005649365.1| - 0.057 13.0 0.2 0.057 13.0 0.2 1.9 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region MARVEL PF01284.18 gi|385776797|ref|YP_005649365.1| - 0.22 11.3 1.9 0.23 11.2 0.5 1.5 1 1 0 1 1 1 0 Membrane-associating domain Paramyxo_ncap PF00973.14 gi|385776797|ref|YP_005649365.1| - 0.53 8.9 2.7 0.61 8.7 1.8 1.1 1 0 0 1 1 1 0 Paramyxovirus nucleocapsid protein DUF1700 PF08006.6 gi|385776797|ref|YP_005649365.1| - 0.8 8.9 4.4 0.36 10.1 1.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1700) DUF624 PF04854.9 gi|385776797|ref|YP_005649365.1| - 2.6 7.9 4.7 7.5 6.4 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function, DUF624 DUF2583 PF10762.4 gi|385776797|ref|YP_005649365.1| - 3.6 7.7 6.5 1.9 8.6 1.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) DUF981 PF06168.6 gi|385776798|ref|YP_005649366.1| - 1.1e-39 136.2 14.6 1.3e-39 135.9 10.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) MFS_1 PF07690.11 gi|385776799|ref|YP_005649367.1| - 3.2e-20 72.1 34.7 7.4e-12 44.6 10.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|385776799|ref|YP_005649367.1| - 0.089 12.5 0.1 0.089 12.5 0.0 4.0 4 1 0 5 5 5 0 MFS_1 like family SPC12 PF06645.8 gi|385776799|ref|YP_005649367.1| - 1.7 8.4 4.3 13 5.6 0.7 3.0 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Pyr_redox PF00070.22 gi|385776800|ref|YP_005649368.1| - 8.4e-17 61.3 5.9 3.4e-16 59.3 0.5 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385776800|ref|YP_005649368.1| - 5e-10 38.8 5.8 0.00021 20.3 0.0 4.0 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385776800|ref|YP_005649368.1| - 3.2e-09 36.9 18.2 0.0058 16.5 4.9 5.0 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385776800|ref|YP_005649368.1| - 1.1e-08 35.4 1.4 0.0014 18.7 0.0 3.3 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|385776800|ref|YP_005649368.1| - 0.0044 16.7 0.0 0.0086 15.7 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|385776800|ref|YP_005649368.1| - 0.013 14.4 1.5 2 7.2 0.1 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein HI0933_like PF03486.9 gi|385776800|ref|YP_005649368.1| - 0.017 13.5 5.6 0.76 8.1 0.1 3.9 4 0 0 4 4 4 0 HI0933-like protein NAD_binding_8 PF13450.1 gi|385776800|ref|YP_005649368.1| - 0.024 14.6 0.3 0.024 14.6 0.2 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|385776800|ref|YP_005649368.1| - 0.032 13.9 0.0 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DFP PF04127.10 gi|385776800|ref|YP_005649368.1| - 0.067 12.7 0.1 0.22 11.1 0.0 2.0 1 1 1 2 2 2 0 DNA / pantothenate metabolism flavoprotein FAD_binding_3 PF01494.14 gi|385776800|ref|YP_005649368.1| - 0.33 9.9 3.1 0.77 8.7 0.4 2.4 2 1 1 3 3 3 0 FAD binding domain GIDA PF01134.17 gi|385776800|ref|YP_005649368.1| - 1.1 8.0 8.2 2.3 6.9 0.3 3.1 2 1 1 3 3 3 0 Glucose inhibited division protein A MFS_1 PF07690.11 gi|385776801|ref|YP_005649369.1| - 1.4e-29 102.9 63.4 3.4e-23 81.9 24.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385776801|ref|YP_005649369.1| - 3.3e-18 65.5 28.2 2e-10 39.8 2.5 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|385776801|ref|YP_005649369.1| - 4e-05 22.2 10.6 4e-05 22.2 7.3 3.2 1 1 1 3 3 3 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|385776801|ref|YP_005649369.1| - 0.031 14.0 9.2 0.043 13.5 0.1 3.8 3 0 0 3 3 3 0 MFS_1 like family MtrG PF04210.8 gi|385776801|ref|YP_005649369.1| - 2.3 7.9 7.4 8.4 6.1 0.1 3.0 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G PGG PF13962.1 gi|385776801|ref|YP_005649369.1| - 9.4 5.8 9.6 0.42 10.2 0.3 3.1 3 0 0 3 3 3 0 Domain of unknown function Acyl-CoA_dh_M PF02770.14 gi|385776803|ref|YP_005649371.1| - 2.7e-15 55.6 0.0 5.9e-15 54.5 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.19 gi|385776803|ref|YP_005649371.1| - 3e-13 50.1 0.0 4.7e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|385776803|ref|YP_005649371.1| - 8.5e-08 32.7 0.0 1.4e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|385776803|ref|YP_005649371.1| - 0.0035 17.5 0.0 0.0075 16.5 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF4322 PF14210.1 gi|385776804|ref|YP_005649372.1| - 3.8e-38 128.7 0.1 9.1e-38 127.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385776804|ref|YP_005649372.1| - 0.0033 17.2 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DDE_5 PF13546.1 gi|385776804|ref|YP_005649372.1| - 0.0034 16.2 0.0 0.0072 15.2 0.0 1.5 2 0 0 2 2 2 1 DDE superfamily endonuclease Acyl-CoA_dh_1 PF00441.19 gi|385776805|ref|YP_005649373.1| - 1.7e-09 37.9 0.0 2e-09 37.7 0.0 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|385776805|ref|YP_005649373.1| - 0.01 16.0 0.0 0.013 15.7 0.0 1.1 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain CoA_transf_3 PF02515.12 gi|385776806|ref|YP_005649374.1| - 3.5e-54 182.9 0.0 5.2e-54 182.3 0.0 1.3 1 0 0 1 1 1 1 CoA-transferase family III DUF2430 PF10353.4 gi|385776806|ref|YP_005649374.1| - 0.023 14.8 0.1 0.057 13.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2430) PHB_acc_N PF07879.6 gi|385776806|ref|YP_005649374.1| - 0.032 13.9 0.1 0.99 9.1 0.0 2.6 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain Sugar_tr PF00083.19 gi|385776807|ref|YP_005649375.1| - 4.3e-36 124.4 26.3 5.1e-36 124.2 18.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|385776807|ref|YP_005649375.1| - 8.1e-31 107.0 49.7 1.3e-27 96.4 21.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PPR_1 PF12854.2 gi|385776807|ref|YP_005649375.1| - 0.063 12.7 0.3 0.21 11.0 0.1 1.9 2 0 0 2 2 2 0 PPR repeat DUF3488 PF11992.3 gi|385776808|ref|YP_005649376.1| - 0.0077 14.9 0.7 0.016 13.8 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) PetM PF08041.6 gi|385776809|ref|YP_005649377.1| - 0.37 10.3 4.9 1.1 8.8 3.4 1.7 1 0 0 1 1 1 0 PetM family of cytochrome b6f complex subunit 7 Wzz PF02706.10 gi|385776810|ref|YP_005649378.1| - 0.0044 16.8 0.3 0.0066 16.2 0.2 1.2 1 0 0 1 1 1 1 Chain length determinant protein Peptidase_M56 PF05569.6 gi|385776810|ref|YP_005649378.1| - 0.091 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 BlaR1 peptidase M56 Sigma_reg_N PF13800.1 gi|385776810|ref|YP_005649378.1| - 3.7 7.6 6.2 0.65 10.0 1.4 2.0 2 1 0 2 2 2 0 Sigma factor regulator N-terminal MFS_1_like PF12832.2 gi|385776810|ref|YP_005649378.1| - 9.3 6.1 9.1 0.51 10.1 1.0 2.1 2 0 0 2 2 2 0 MFS_1 like family Neil1-DNA_bind PF09292.5 gi|385776811|ref|YP_005649379.1| - 0.0045 16.7 0.2 0.018 14.8 0.0 1.9 2 0 0 2 2 2 1 Endonuclease VIII-like 1, DNA bind DUF3139 PF11337.3 gi|385776813|ref|YP_005649381.1| - 0.012 15.9 1.8 0.024 14.9 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) SKN1 PF03935.10 gi|385776813|ref|YP_005649381.1| - 0.075 11.1 0.3 0.09 10.9 0.2 1.1 1 0 0 1 1 1 0 Beta-glucan synthesis-associated protein (SKN1) Baculo_11_kDa PF06143.6 gi|385776813|ref|YP_005649381.1| - 0.13 11.6 5.8 0.2 11.0 4.0 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family OppC_N PF12911.2 gi|385776813|ref|YP_005649381.1| - 0.26 10.6 2.5 0.61 9.5 1.7 1.6 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Sigma_reg_N PF13800.1 gi|385776813|ref|YP_005649381.1| - 0.39 10.7 7.5 0.037 14.0 2.0 1.8 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF1673 PF07895.6 gi|385776813|ref|YP_005649381.1| - 5.4 6.4 8.1 1.4 8.3 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1673) DUF4115 PF13464.1 gi|385776814|ref|YP_005649382.1| - 0.0064 16.1 1.0 0.29 10.8 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4115) DUF3595 PF12166.3 gi|385776815|ref|YP_005649383.1| - 0.071 11.9 1.0 0.082 11.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3595) Rifin_STEVOR PF02009.11 gi|385776815|ref|YP_005649383.1| - 0.47 10.0 3.1 0.59 9.7 2.1 1.2 1 0 0 1 1 1 0 Rifin/stevor family MaoC_dehydratas PF01575.14 gi|385776816|ref|YP_005649384.1| - 5.2e-16 58.1 0.0 7e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain FabA PF07977.8 gi|385776816|ref|YP_005649384.1| - 0.0019 17.7 0.0 0.0033 16.9 0.0 1.4 1 1 0 1 1 1 1 FabA-like domain MaoC_dehydrat_N PF13452.1 gi|385776816|ref|YP_005649384.1| - 0.0024 17.6 0.0 0.0047 16.7 0.0 1.5 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|385776816|ref|YP_005649384.1| - 0.01 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Thioesterase superfamily Antitoxin-MazE PF04014.13 gi|385776817|ref|YP_005649385.1| - 1.3e-11 43.9 1.6 2.2e-11 43.2 1.1 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF104 PF01954.11 gi|385776817|ref|YP_005649385.1| - 0.027 14.4 0.6 0.049 13.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF104 Methyltrans_RNA PF04452.9 gi|385776817|ref|YP_005649385.1| - 0.032 13.3 0.0 0.039 13.0 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase PIN PF01850.16 gi|385776818|ref|YP_005649386.1| - 4.5e-12 46.3 0.2 5.2e-12 46.1 0.1 1.1 1 0 0 1 1 1 1 PIN domain Vps53_N PF04100.7 gi|385776819|ref|YP_005649387.1| - 0.019 13.7 0.8 0.021 13.6 0.5 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal DUF883 PF05957.8 gi|385776819|ref|YP_005649387.1| - 0.025 14.9 0.3 0.028 14.8 0.2 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) GlutR_dimer PF00745.15 gi|385776819|ref|YP_005649387.1| - 0.051 13.5 0.1 0.062 13.2 0.1 1.2 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain ABC_trans_N PF14510.1 gi|385776819|ref|YP_005649387.1| - 0.056 13.5 0.1 0.066 13.3 0.1 1.1 1 0 0 1 1 1 0 ABC-transporter extracellular N-terminal Laminin_I PF06008.9 gi|385776819|ref|YP_005649387.1| - 0.066 12.5 0.8 0.15 11.3 0.5 1.6 1 1 0 1 1 1 0 Laminin Domain I Syntaxin-6_N PF09177.6 gi|385776819|ref|YP_005649387.1| - 0.069 13.5 0.7 0.1 13.0 0.5 1.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal GlnD_UR_UTase PF08335.6 gi|385776819|ref|YP_005649387.1| - 0.089 12.6 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 GlnD PII-uridylyltransferase PPR PF01535.15 gi|385776819|ref|YP_005649387.1| - 0.14 12.1 0.2 11 6.2 0.1 2.3 2 0 0 2 2 2 0 PPR repeat DUF1268 PF06896.6 gi|385776819|ref|YP_005649387.1| - 0.18 12.1 1.2 0.24 11.7 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1268) BLOC1_2 PF10046.4 gi|385776819|ref|YP_005649387.1| - 0.24 11.5 2.1 0.32 11.1 1.4 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lactamase_B PF00753.22 gi|385776820|ref|YP_005649388.1| - 1.1e-31 110.0 0.0 1.3e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385776820|ref|YP_005649388.1| - 9.8e-06 25.2 0.0 1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|385776820|ref|YP_005649388.1| - 0.026 14.2 0.0 0.038 13.7 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain CCG PF02754.11 gi|385776821|ref|YP_005649389.1| - 8.6e-11 41.6 0.0 2.6e-07 30.5 0.0 2.8 3 0 0 3 3 3 2 Cysteine-rich domain DUF162 PF02589.10 gi|385776822|ref|YP_005649390.1| - 2.2e-51 174.0 0.1 2.9e-51 173.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|385776822|ref|YP_005649390.1| - 9e-11 41.6 1.9 1.5e-10 40.9 1.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385776822|ref|YP_005649390.1| - 4.1e-07 30.3 1.6 0.014 15.7 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385776822|ref|YP_005649390.1| - 1.2e-06 28.7 2.2 3.3e-06 27.3 1.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385776822|ref|YP_005649390.1| - 8e-06 26.1 2.7 1.6e-05 25.2 1.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385776822|ref|YP_005649390.1| - 2.1e-05 24.2 3.9 0.00011 21.8 3.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385776822|ref|YP_005649390.1| - 2.4e-05 24.5 0.9 0.041 14.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|385776822|ref|YP_005649390.1| - 0.0011 18.5 0.9 0.12 12.0 0.0 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|385776822|ref|YP_005649390.1| - 0.0014 18.3 8.8 0.0042 16.8 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|385776822|ref|YP_005649390.1| - 0.0028 17.2 8.8 0.0077 15.8 1.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385776822|ref|YP_005649390.1| - 0.049 14.3 6.2 0.25 12.1 4.3 2.1 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|385776822|ref|YP_005649390.1| - 0.15 12.7 11.0 1.9 9.2 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385776822|ref|YP_005649390.1| - 0.21 11.5 7.6 0.85 9.6 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385776822|ref|YP_005649390.1| - 0.22 11.9 7.6 0.6 10.5 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385776822|ref|YP_005649390.1| - 0.44 10.4 7.9 5 7.0 5.5 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain MFS_1 PF07690.11 gi|385776823|ref|YP_005649391.1| - 7e-47 159.8 86.0 1.2e-41 142.5 34.7 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385776823|ref|YP_005649391.1| - 1.3e-11 43.7 6.6 1.3e-11 43.7 4.6 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|385776823|ref|YP_005649391.1| - 5.3e-07 28.3 43.5 3.9e-05 22.2 6.0 3.5 2 1 2 4 4 4 3 MFS/sugar transport protein OrfB_IS605 PF01385.14 gi|385776824|ref|YP_005649392.1| - 1.1e-26 93.7 6.7 1.4e-26 93.3 4.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385776824|ref|YP_005649392.1| - 4.6e-24 83.8 0.1 9.4e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385776824|ref|YP_005649392.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385776824|ref|YP_005649392.1| - 0.028 14.0 0.4 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385776824|ref|YP_005649392.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|385776824|ref|YP_005649392.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385776824|ref|YP_005649392.1| - 0.29 10.9 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385776824|ref|YP_005649392.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Raffinose_syn PF05691.7 gi|385776825|ref|YP_005649393.1| - 1.5e-43 148.4 4.7 5.8e-24 83.6 0.1 3.1 2 1 1 3 3 3 3 Raffinose synthase or seed imbibition protein Sip1 HD PF01966.17 gi|385776826|ref|YP_005649394.1| - 6.2e-12 45.6 0.2 1.8e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|385776826|ref|YP_005649394.1| - 0.04 13.1 0.0 0.076 12.2 0.0 1.4 1 0 0 1 1 1 0 HDOD domain MR_MLE_C PF13378.1 gi|385776827|ref|YP_005649395.1| - 7.2e-28 96.7 0.0 1.9e-26 92.1 0.0 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|385776827|ref|YP_005649395.1| - 3.2e-20 72.2 0.0 6.4e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|385776827|ref|YP_005649395.1| - 6.8e-16 58.5 0.1 1.4e-15 57.5 0.1 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Pterin_bind PF00809.17 gi|385776827|ref|YP_005649395.1| - 0.0098 15.2 0.0 0.039 13.3 0.0 1.8 2 0 0 2 2 2 1 Pterin binding enzyme PDZ_1 PF12812.2 gi|385776828|ref|YP_005649396.1| - 0.16 11.8 0.1 27 4.7 0.1 2.8 2 0 0 2 2 2 0 PDZ-like domain Sugar_tr PF00083.19 gi|385776829|ref|YP_005649397.1| - 7.4e-29 100.6 41.0 6.4e-21 74.4 10.1 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|385776829|ref|YP_005649397.1| - 8.7e-23 80.5 53.4 8.7e-23 80.5 37.0 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1 PF07690.11 gi|385776830|ref|YP_005649398.1| - 9.1e-22 77.2 82.3 6.2e-20 71.2 32.9 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385776830|ref|YP_005649398.1| - 3.1e-18 65.6 27.6 4.4e-18 65.0 19.1 1.3 1 0 0 1 1 1 1 Sugar (and other) transporter DUF1352 PF07086.7 gi|385776830|ref|YP_005649398.1| - 0.078 12.6 0.1 0.078 12.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1352) FAA_hydrolase PF01557.13 gi|385776831|ref|YP_005649399.1| - 1.8e-28 99.5 0.0 2.1e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Aldedh PF00171.17 gi|385776832|ref|YP_005649400.1| - 1.9e-165 550.6 0.0 2.2e-165 550.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|385776832|ref|YP_005649400.1| - 2.8e-05 23.0 0.0 9.4e-05 21.3 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA reductase (LuxC) DUF4325 PF14213.1 gi|385776832|ref|YP_005649400.1| - 0.031 13.9 0.1 0.098 12.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4325) DUF4355 PF14265.1 gi|385776832|ref|YP_005649400.1| - 0.15 12.0 1.2 2.8 7.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) Abhydrolase_6 PF12697.2 gi|385776833|ref|YP_005649401.1| - 4e-30 105.3 0.0 4.7e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|385776833|ref|YP_005649401.1| - 9e-24 84.2 0.0 2.4e-23 82.9 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|385776833|ref|YP_005649401.1| - 3.1e-16 59.4 0.0 2.8e-15 56.3 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|385776833|ref|YP_005649401.1| - 2.7e-06 26.7 0.0 0.0044 16.2 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.11 gi|385776833|ref|YP_005649401.1| - 4e-06 26.4 0.0 2.6e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.3 gi|385776833|ref|YP_005649401.1| - 5.9e-06 26.0 0.0 3e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Putative lysophospholipase Lipase_3 PF01764.20 gi|385776833|ref|YP_005649401.1| - 0.0002 20.9 0.0 0.00063 19.3 0.0 1.8 1 1 0 1 1 1 1 Lipase (class 3) Thioesterase PF00975.15 gi|385776833|ref|YP_005649401.1| - 0.00046 20.4 0.0 0.00063 20.0 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Peptidase_S15 PF02129.13 gi|385776833|ref|YP_005649401.1| - 0.00051 19.5 0.0 0.0025 17.2 0.0 1.8 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PGAP1 PF07819.8 gi|385776833|ref|YP_005649401.1| - 0.0011 18.6 0.0 0.0037 16.8 0.0 1.8 2 0 0 2 2 2 1 PGAP1-like protein Abhydrolase_3 PF07859.8 gi|385776833|ref|YP_005649401.1| - 0.0021 17.6 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold PAF-AH_p_II PF03403.8 gi|385776833|ref|YP_005649401.1| - 0.029 12.6 0.0 0.05 11.8 0.0 1.3 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II Peptidase_S28 PF05577.7 gi|385776833|ref|YP_005649401.1| - 0.032 12.8 0.0 0.049 12.2 0.0 1.2 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF1749 PF08538.5 gi|385776833|ref|YP_005649401.1| - 0.039 12.8 0.1 0.066 12.0 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1749) Chlorophyllase PF07224.6 gi|385776833|ref|YP_005649401.1| - 0.053 12.3 0.0 0.072 11.8 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase DUF1057 PF06342.7 gi|385776833|ref|YP_005649401.1| - 0.053 12.3 1.1 0.086 11.6 0.1 1.8 2 1 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1057) BAAT_C PF08840.6 gi|385776833|ref|YP_005649401.1| - 0.054 13.1 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.15 gi|385776833|ref|YP_005649401.1| - 0.068 12.5 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Abhydrolase_8 PF06259.7 gi|385776833|ref|YP_005649401.1| - 0.16 11.4 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase ACT_4 PF13291.1 gi|385776834|ref|YP_005649402.1| - 0.72 10.2 4.7 8 6.8 0.1 2.0 1 1 1 2 2 2 0 ACT domain adh_short PF00106.20 gi|385776835|ref|YP_005649403.1| - 3.4e-33 114.9 0.1 5.1e-33 114.3 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385776835|ref|YP_005649403.1| - 1.2e-31 110.3 0.2 1.4e-31 110.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385776835|ref|YP_005649403.1| - 1e-13 51.3 0.0 1.4e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|385776835|ref|YP_005649403.1| - 0.0082 15.6 0.3 0.017 14.5 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|385776835|ref|YP_005649403.1| - 0.025 14.2 0.1 0.056 13.0 0.1 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPR_1 PF00515.23 gi|385776835|ref|YP_005649403.1| - 0.13 11.9 0.0 0.3 10.7 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Thiolase_C PF02803.13 gi|385776836|ref|YP_005649404.1| - 0.00051 19.4 0.2 0.0015 17.9 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain DUF35 PF01796.12 gi|385776837|ref|YP_005649405.1| - 3.1e-07 30.5 0.0 5.3e-07 29.7 0.0 1.4 1 1 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|385776837|ref|YP_005649405.1| - 3.7e-07 29.8 0.4 5.6e-07 29.2 0.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|385776837|ref|YP_005649405.1| - 0.0028 17.3 0.1 0.007 16.0 0.1 1.6 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family NifZ PF04319.8 gi|385776837|ref|YP_005649405.1| - 0.063 12.6 0.4 3.1 7.2 0.1 2.2 1 1 1 2 2 2 0 NifZ domain DUF2082 PF09855.4 gi|385776837|ref|YP_005649405.1| - 0.077 12.8 4.3 2.6 7.9 0.0 2.4 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) NOB1_Zn_bind PF08772.6 gi|385776837|ref|YP_005649405.1| - 0.13 12.1 1.5 0.21 11.4 0.5 1.7 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like FdhE PF04216.7 gi|385776837|ref|YP_005649405.1| - 0.14 11.8 0.3 0.18 11.4 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation TFIIS_C PF01096.13 gi|385776837|ref|YP_005649405.1| - 0.24 11.0 1.8 7.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|385776837|ref|YP_005649405.1| - 0.87 9.2 4.8 1.9 8.1 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385776837|ref|YP_005649405.1| - 1.5 8.8 4.9 45 4.0 3.4 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|385776837|ref|YP_005649405.1| - 3.8 7.2 5.9 4.5 7.0 0.5 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF1936 PF09151.5 gi|385776837|ref|YP_005649405.1| - 5.8 6.5 5.9 0.49 9.9 0.7 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1936) DUF998 PF06197.8 gi|385776839|ref|YP_005649407.1| - 6.3e-32 110.3 13.6 7.5e-32 110.1 9.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Methyltransf_24 PF13578.1 gi|385776840|ref|YP_005649408.1| - 9.8e-14 52.0 0.0 1.5e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CmcI PF04989.7 gi|385776840|ref|YP_005649408.1| - 1.6e-05 24.3 0.0 3.1e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 Cephalosporin hydroxylase Glyco_trans_4_2 PF13477.1 gi|385776840|ref|YP_005649408.1| - 0.075 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like TatC PF00902.13 gi|385776841|ref|YP_005649409.1| - 9.7e-42 142.7 24.3 1.3e-41 142.3 16.8 1.3 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.11 gi|385776842|ref|YP_005649410.1| - 2e-13 49.2 1.6 2.6e-13 48.8 1.1 1.4 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4391 PF14335.1 gi|385776842|ref|YP_005649410.1| - 0.0042 16.5 1.8 0.0044 16.4 1.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4391) DUF4446 PF14584.1 gi|385776842|ref|YP_005649410.1| - 0.031 14.1 0.5 0.04 13.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) Lectin_N PF03954.9 gi|385776842|ref|YP_005649410.1| - 0.048 13.0 0.5 0.062 12.7 0.3 1.1 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain DUF3573 PF12097.3 gi|385776842|ref|YP_005649410.1| - 0.07 11.7 0.2 0.072 11.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) ApoL PF05461.6 gi|385776842|ref|YP_005649410.1| - 0.084 12.1 1.8 0.099 11.8 1.2 1.1 1 0 0 1 1 1 0 Apolipoprotein L DUF4140 PF13600.1 gi|385776842|ref|YP_005649410.1| - 0.16 12.4 1.8 0.2 12.1 1.2 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Med9 PF07544.8 gi|385776842|ref|YP_005649410.1| - 0.27 11.0 3.6 0.28 10.9 1.9 1.5 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 FlxA PF14282.1 gi|385776842|ref|YP_005649410.1| - 0.44 10.5 6.3 0.57 10.1 3.8 1.4 1 1 0 1 1 1 0 FlxA-like protein Ribosomal_L29 PF00831.18 gi|385776842|ref|YP_005649410.1| - 0.48 10.1 7.5 0.18 11.5 3.1 1.7 2 0 0 2 2 2 0 Ribosomal L29 protein Synaptobrevin PF00957.16 gi|385776842|ref|YP_005649410.1| - 0.71 9.5 9.7 0.17 11.4 2.2 2.1 2 0 0 2 2 2 0 Synaptobrevin DUF724 PF05266.9 gi|385776842|ref|YP_005649410.1| - 0.91 9.1 7.3 1.1 8.8 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) bZIP_2 PF07716.10 gi|385776842|ref|YP_005649410.1| - 2 8.2 9.1 0.24 11.2 2.0 2.0 2 0 0 2 2 2 0 Basic region leucine zipper ILVD_EDD PF00920.16 gi|385776843|ref|YP_005649411.1| - 1.8e-212 706.4 1.2 2e-212 706.2 0.8 1.0 1 0 0 1 1 1 1 Dehydratase family Peptidase_M32 PF02074.10 gi|385776844|ref|YP_005649412.1| - 1.2e-133 446.3 5.1 1.3e-133 446.2 3.6 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Big_3_4 PF13754.1 gi|385776845|ref|YP_005649413.1| - 0.41 10.9 6.0 2.7 8.4 0.2 3.2 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) PKD PF00801.15 gi|385776845|ref|YP_005649413.1| - 0.95 9.2 4.2 3.2 7.5 0.2 2.5 2 1 0 2 2 2 0 PKD domain HTH_IclR PF09339.5 gi|385776846|ref|YP_005649414.1| - 9.7e-10 37.8 0.0 1.7e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|385776846|ref|YP_005649414.1| - 1.6e-07 30.8 0.0 3.4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|385776846|ref|YP_005649414.1| - 1.7e-06 27.6 0.3 4.7e-06 26.2 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|385776846|ref|YP_005649414.1| - 5.2e-06 26.6 0.3 1.2e-05 25.5 0.1 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|385776846|ref|YP_005649414.1| - 1.9e-05 23.9 0.1 4.9e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385776846|ref|YP_005649414.1| - 0.0005 19.8 0.0 0.00082 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|385776846|ref|YP_005649414.1| - 0.016 15.3 0.0 0.04 14.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Na_H_antiport_2 PF13726.1 gi|385776846|ref|YP_005649414.1| - 0.022 14.6 0.1 0.27 11.1 0.0 2.5 2 1 1 3 3 3 0 Na+-H+ antiporter family HTH_5 PF01022.15 gi|385776846|ref|YP_005649414.1| - 0.023 14.3 0.0 0.07 12.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|385776846|ref|YP_005649414.1| - 0.045 13.4 0.4 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_28 PF13518.1 gi|385776846|ref|YP_005649414.1| - 0.077 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|385776846|ref|YP_005649414.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PA14 PF07691.7 gi|385776847|ref|YP_005649415.1| - 0.085 12.4 1.0 0.14 11.8 0.7 1.3 1 0 0 1 1 1 0 PA14 domain SSP160 PF06933.6 gi|385776847|ref|YP_005649415.1| - 4.8 5.0 14.4 8 4.2 10.0 1.3 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Mucin PF01456.12 gi|385776847|ref|YP_005649415.1| - 6.3 6.5 17.9 9.4 6.0 12.4 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein Herpes_capsid PF06112.6 gi|385776847|ref|YP_005649415.1| - 7 6.6 10.4 10 6.1 7.2 1.2 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein TMEM154 PF15102.1 gi|385776848|ref|YP_005649416.1| - 0.0031 17.2 12.8 0.0094 15.6 8.9 1.8 1 0 0 1 1 1 1 TMEM154 protein family Rifin_STEVOR PF02009.11 gi|385776848|ref|YP_005649416.1| - 0.0033 17.1 6.6 0.0033 17.1 4.6 1.8 2 0 0 2 2 2 1 Rifin/stevor family Orthoreo_P10 PF07204.6 gi|385776848|ref|YP_005649416.1| - 0.083 12.6 1.5 0.49 10.1 1.2 2.2 2 0 0 2 2 2 0 Orthoreovirus membrane fusion protein p10 Herpes_UL45 PF05473.7 gi|385776848|ref|YP_005649416.1| - 0.24 10.8 4.7 0.51 9.7 3.2 1.5 1 0 0 1 1 1 0 UL45 protein LysE PF01810.13 gi|385776849|ref|YP_005649417.1| - 0.0012 18.1 4.1 0.0012 18.1 2.9 3.4 2 2 1 3 3 3 1 LysE type translocator DUF1469 PF07332.6 gi|385776849|ref|YP_005649417.1| - 0.0033 17.1 0.0 0.0033 17.1 0.0 3.3 2 1 0 2 2 2 1 Protein of unknown function (DUF1469) DUF1761 PF08570.5 gi|385776849|ref|YP_005649417.1| - 9.4 6.2 24.2 6 6.9 1.0 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1761) HTH_10 PF04967.7 gi|385776850|ref|YP_005649418.1| - 2.1e-21 75.2 0.0 3.5e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|385776850|ref|YP_005649418.1| - 4.3e-06 25.9 0.0 1.7e-05 24.0 0.0 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|385776850|ref|YP_005649418.1| - 0.00015 21.2 0.0 0.031 13.9 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.2 gi|385776850|ref|YP_005649418.1| - 0.0061 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385776850|ref|YP_005649418.1| - 0.019 15.3 0.0 0.58 10.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF4449 PF14613.1 gi|385776850|ref|YP_005649418.1| - 0.022 14.7 0.1 0.034 14.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4449) HTH_28 PF13518.1 gi|385776850|ref|YP_005649418.1| - 0.023 14.7 0.1 5 7.2 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|385776850|ref|YP_005649418.1| - 0.034 13.8 0.0 1.5 8.5 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.1 gi|385776850|ref|YP_005649418.1| - 0.067 12.9 0.1 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.1 gi|385776850|ref|YP_005649418.1| - 0.076 12.4 2.7 0.5 9.7 0.0 3.2 3 1 1 4 4 4 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|385776850|ref|YP_005649418.1| - 0.086 12.2 0.0 0.48 9.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF2376 PF09550.5 gi|385776850|ref|YP_005649418.1| - 0.087 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical phage protein (DUF2376) AAA_21 PF13304.1 gi|385776850|ref|YP_005649418.1| - 0.48 10.3 6.4 0.62 9.9 4.5 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|385776852|ref|YP_005649420.1| - 6e-14 52.5 0.0 1.2e-13 51.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.18 gi|385776852|ref|YP_005649420.1| - 0.0023 17.9 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|385776852|ref|YP_005649420.1| - 0.0031 17.3 0.1 0.021 14.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385776852|ref|YP_005649420.1| - 0.0047 16.6 0.2 0.011 15.4 0.2 1.7 1 1 0 1 1 1 1 Archaeal ATPase Miro PF08477.8 gi|385776852|ref|YP_005649420.1| - 0.0057 17.1 0.1 0.023 15.2 0.1 1.9 2 0 0 2 2 2 1 Miro-like protein MobB PF03205.9 gi|385776852|ref|YP_005649420.1| - 0.074 12.7 0.5 0.24 11.0 0.3 2.0 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DoxD PF04173.8 gi|385776854|ref|YP_005649422.1| - 9.5e-61 204.3 14.1 1.1e-60 204.0 9.8 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.7 gi|385776854|ref|YP_005649422.1| - 4.9e-09 36.4 5.0 1e-08 35.4 3.5 1.6 1 0 0 1 1 1 1 DoxX DoxX_3 PF13781.1 gi|385776854|ref|YP_005649422.1| - 3.9 7.8 12.6 2.9 8.2 4.0 2.8 1 1 1 3 3 3 0 DoxX-like family Lactonase PF10282.4 gi|385776856|ref|YP_005649424.1| - 0.00026 20.1 0.0 0.18 10.8 0.0 2.4 1 1 1 2 2 2 2 Lactonase, 7-bladed beta-propeller PQQ_2 PF13360.1 gi|385776856|ref|YP_005649424.1| - 0.011 15.2 0.0 0.023 14.1 0.0 1.6 1 0 0 1 1 1 0 PQQ-like domain Shisa PF13908.1 gi|385776856|ref|YP_005649424.1| - 0.11 12.7 0.2 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Peptidase_M56 PF05569.6 gi|385776856|ref|YP_005649424.1| - 0.13 11.1 0.2 0.19 10.6 0.1 1.2 1 0 0 1 1 1 0 BlaR1 peptidase M56 TusA PF01206.12 gi|385776857|ref|YP_005649425.1| - 6.3e-14 51.3 0.1 2e-13 49.7 0.0 1.9 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF417 PF04224.7 gi|385776857|ref|YP_005649425.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF417 LA-virus_coat PF09220.5 gi|385776858|ref|YP_005649426.1| - 0.12 10.7 0.0 0.14 10.5 0.0 1.1 1 0 0 1 1 1 0 L-A virus, major coat protein DrsE PF02635.10 gi|385776859|ref|YP_005649427.1| - 5.5e-06 26.4 0.0 5.8e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.12 gi|385776860|ref|YP_005649428.1| - 7.5e-19 67.1 0.1 8.6e-19 66.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|385776860|ref|YP_005649428.1| - 0.00017 21.0 0.0 0.00027 20.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Sulf_transp PF04143.9 gi|385776861|ref|YP_005649429.1| - 1e-15 57.4 43.8 2.1e-11 43.6 4.6 4.2 4 0 0 4 4 4 3 Sulphur transport VIT1 PF01988.14 gi|385776861|ref|YP_005649429.1| - 0.005 16.3 0.8 0.005 16.3 0.6 3.9 3 1 1 4 4 4 1 VIT family DrsE_2 PF13686.1 gi|385776863|ref|YP_005649431.1| - 3.2e-12 46.4 0.4 2.2e-05 24.3 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|385776863|ref|YP_005649431.1| - 6.4e-07 29.4 0.0 7.3e-07 29.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family NCD1 PF04904.8 gi|385776863|ref|YP_005649431.1| - 0.038 13.7 0.0 0.072 12.8 0.0 1.6 1 0 0 1 1 1 0 NAB conserved region 1 (NCD1) ABC_tran PF00005.22 gi|385776864|ref|YP_005649432.1| - 3.1e-25 89.0 0.0 5e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385776864|ref|YP_005649432.1| - 7.7e-12 45.7 5.3 1.2e-06 28.7 0.2 2.7 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|385776864|ref|YP_005649432.1| - 1.8e-07 30.5 1.7 0.0035 16.4 0.1 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|385776864|ref|YP_005649432.1| - 7.7e-06 25.3 0.1 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385776864|ref|YP_005649432.1| - 5e-05 23.7 0.8 6.8e-05 23.2 0.6 1.7 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|385776864|ref|YP_005649432.1| - 0.0019 17.1 0.0 0.0031 16.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|385776864|ref|YP_005649432.1| - 0.0023 18.0 0.2 0.012 15.7 0.1 2.2 2 1 0 2 2 2 1 AAA domain ACT_7 PF13840.1 gi|385776864|ref|YP_005649432.1| - 0.0044 16.4 0.2 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 ACT domain SMC_N PF02463.14 gi|385776864|ref|YP_005649432.1| - 0.0055 15.9 0.7 0.043 13.0 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385776864|ref|YP_005649432.1| - 0.006 15.7 0.1 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|385776864|ref|YP_005649432.1| - 0.012 15.6 0.0 0.017 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|385776864|ref|YP_005649432.1| - 0.016 14.9 0.7 0.069 12.8 0.4 2.0 1 1 0 1 1 1 0 Archaeal ATPase MutS_V PF00488.16 gi|385776864|ref|YP_005649432.1| - 0.019 14.3 0.2 0.11 11.8 0.0 2.0 2 0 0 2 2 2 0 MutS domain V AAA_10 PF12846.2 gi|385776864|ref|YP_005649432.1| - 0.023 14.1 0.2 0.033 13.6 0.2 1.6 1 1 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|385776864|ref|YP_005649432.1| - 0.028 14.3 0.0 0.25 11.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|385776864|ref|YP_005649432.1| - 0.037 12.5 0.4 0.076 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|385776864|ref|YP_005649432.1| - 0.049 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_PrkA PF08298.6 gi|385776864|ref|YP_005649432.1| - 0.065 11.9 0.4 0.13 10.8 0.0 1.8 2 1 0 2 2 2 0 PrkA AAA domain AAA_25 PF13481.1 gi|385776864|ref|YP_005649432.1| - 0.072 12.4 0.0 0.22 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|385776864|ref|YP_005649432.1| - 0.11 13.3 0.4 0.36 11.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|385776864|ref|YP_005649432.1| - 0.17 12.0 0.8 0.96 9.6 0.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|385776864|ref|YP_005649432.1| - 0.22 10.0 1.0 0.29 9.6 0.3 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF202 PF02656.10 gi|385776866|ref|YP_005649434.1| - 0.13 12.4 0.7 0.86 9.8 0.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) CRPA PF05745.6 gi|385776866|ref|YP_005649434.1| - 0.53 10.0 3.5 2.4 7.9 0.4 2.1 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF1056 PF06341.6 gi|385776866|ref|YP_005649434.1| - 1 9.4 8.7 0.11 12.5 0.7 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1056) CD20 PF04103.10 gi|385776866|ref|YP_005649434.1| - 1.6 8.6 9.5 7.7 6.4 6.6 2.0 1 1 0 1 1 1 0 CD20-like family YtpI PF14007.1 gi|385776866|ref|YP_005649434.1| - 3.3 7.7 9.3 14 5.6 0.3 3.1 2 1 1 3 3 3 0 YtpI-like protein DUF3096 PF11295.3 gi|385776866|ref|YP_005649434.1| - 6.8 6.2 12.2 11 5.6 2.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3096) HTH_10 PF04967.7 gi|385776867|ref|YP_005649435.1| - 1.9e-22 78.5 0.1 3.3e-22 77.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Fe-S_biosyn PF01521.15 gi|385776867|ref|YP_005649435.1| - 0.0053 16.6 0.3 0.18 11.7 0.0 2.2 2 0 0 2 2 2 1 Iron-sulphur cluster biosynthesis Sigma70_r4 PF04545.11 gi|385776867|ref|YP_005649435.1| - 0.0054 16.0 0.0 0.015 14.5 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|385776867|ref|YP_005649435.1| - 0.0081 15.5 1.6 0.11 11.9 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MFS_1 PF07690.11 gi|385776868|ref|YP_005649436.1| - 4.5e-44 150.6 50.4 4.5e-44 150.6 34.9 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385776868|ref|YP_005649436.1| - 3.8e-09 35.6 38.8 9.9e-09 34.2 26.9 1.7 1 1 0 1 1 1 1 Sugar (and other) transporter EamA PF00892.15 gi|385776869|ref|YP_005649437.1| - 7.5e-08 32.4 9.8 8.7e-08 32.2 6.8 1.0 1 0 0 1 1 1 1 EamA-like transporter family Phtf-FEM1B_bdg PF12129.3 gi|385776869|ref|YP_005649437.1| - 0.56 9.5 3.7 0.64 9.3 2.6 1.1 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor DUF3021 PF11457.3 gi|385776869|ref|YP_005649437.1| - 0.91 9.4 8.8 1.1 9.1 6.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) TPT PF03151.11 gi|385776869|ref|YP_005649437.1| - 1.1 8.8 5.9 1.3 8.6 4.1 1.1 1 0 0 1 1 1 0 Triose-phosphate Transporter family Antitoxin-MazE PF04014.13 gi|385776870|ref|YP_005649438.1| - 7.1e-14 51.1 0.2 1e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF3006 PF11213.3 gi|385776870|ref|YP_005649438.1| - 0.012 15.3 0.1 0.015 15.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) SH3_2 PF07653.12 gi|385776870|ref|YP_005649438.1| - 0.035 13.6 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Variant SH3 domain PIN PF01850.16 gi|385776871|ref|YP_005649439.1| - 6.1e-18 65.3 1.7 6.8e-18 65.1 1.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_4 PF13638.1 gi|385776871|ref|YP_005649439.1| - 0.017 15.2 0.3 0.021 14.8 0.2 1.3 1 0 0 1 1 1 0 PIN domain EamA PF00892.15 gi|385776872|ref|YP_005649440.1| - 2.2e-15 56.7 41.5 8.5e-11 41.9 8.5 3.0 1 1 1 2 2 2 2 EamA-like transporter family Zip PF02535.17 gi|385776874|ref|YP_005649442.1| - 0.00019 20.5 17.3 0.00057 18.9 4.2 2.6 2 1 0 2 2 2 2 ZIP Zinc transporter DUF3917 PF13055.1 gi|385776874|ref|YP_005649442.1| - 0.016 15.4 1.6 0.071 13.3 1.1 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3917) DHDPS PF00701.17 gi|385776875|ref|YP_005649443.1| - 6.6e-59 198.8 0.0 7.7e-59 198.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Cyclase PF04199.8 gi|385776876|ref|YP_005649444.1| - 2.2e-26 92.5 0.0 2.9e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase ABC_tran PF00005.22 gi|385776877|ref|YP_005649445.1| - 2.4e-32 112.1 0.0 3.9e-32 111.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385776877|ref|YP_005649445.1| - 7.5e-07 29.3 0.0 0.00032 20.7 0.0 2.5 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|385776877|ref|YP_005649445.1| - 0.0053 16.2 0.1 1.5 8.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SbcCD_C PF13558.1 gi|385776877|ref|YP_005649445.1| - 0.0061 16.4 0.1 0.025 14.4 0.1 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|385776877|ref|YP_005649445.1| - 0.012 14.6 0.0 0.12 11.3 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|385776877|ref|YP_005649445.1| - 0.058 13.6 0.0 2.1 8.5 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|385776877|ref|YP_005649445.1| - 0.07 13.1 0.3 0.41 10.5 0.2 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|385776877|ref|YP_005649445.1| - 0.078 13.1 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|385776878|ref|YP_005649446.1| - 3.6e-15 55.9 29.7 3.6e-15 55.9 20.6 2.6 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|385776879|ref|YP_005649447.1| - 2.9e-11 43.2 25.7 2.9e-11 43.2 17.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0697 PF15117.1 gi|385776879|ref|YP_005649447.1| - 0.2 11.4 4.4 0.29 10.9 0.0 3.0 3 1 1 4 4 4 0 Uncharacterised protein family UPF0697 SBP_bac_8 PF13416.1 gi|385776880|ref|YP_005649448.1| - 8.3e-10 38.8 8.2 1.6e-09 37.9 5.7 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|385776880|ref|YP_005649448.1| - 8.9e-05 22.3 5.8 8.9e-05 22.3 4.0 2.4 1 1 1 3 3 3 1 Bacterial extracellular solute-binding protein DUF1628 PF07790.6 gi|385776880|ref|YP_005649448.1| - 0.19 12.5 2.6 0.5 11.1 1.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) SSP160 PF06933.6 gi|385776880|ref|YP_005649448.1| - 2.3 6.0 15.7 3.3 5.5 10.9 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 AMP-binding PF00501.23 gi|385776881|ref|YP_005649449.1| - 1.9e-79 266.9 0.0 2.3e-79 266.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385776881|ref|YP_005649449.1| - 1.6e-21 77.0 0.1 3.2e-21 76.0 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Baculo_PEP_N PF04512.7 gi|385776881|ref|YP_005649449.1| - 0.09 12.7 0.1 0.42 10.6 0.0 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, N terminus IU_nuc_hydro PF01156.14 gi|385776882|ref|YP_005649450.1| - 1.3e-06 27.8 0.1 1.4e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase IU_nuc_hydro PF01156.14 gi|385776883|ref|YP_005649451.1| - 1.4e-06 27.7 0.0 1.4e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase HTH_10 PF04967.7 gi|385776884|ref|YP_005649452.1| - 4.1e-19 67.8 0.0 8.2e-19 66.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|385776884|ref|YP_005649452.1| - 0.00074 18.7 0.1 0.0014 17.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GED PF02212.13 gi|385776884|ref|YP_005649452.1| - 0.034 14.0 3.0 0.15 11.9 2.0 2.2 1 1 0 1 1 1 0 Dynamin GTPase effector domain GerE PF00196.14 gi|385776884|ref|YP_005649452.1| - 0.05 12.9 0.2 0.05 12.9 0.1 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|385776884|ref|YP_005649452.1| - 0.059 13.0 0.0 0.57 9.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Alpha_L_fucos PF01120.12 gi|385776885|ref|YP_005649453.1| - 1.4e-91 307.0 1.7 1.7e-91 306.6 1.2 1.1 1 0 0 1 1 1 1 Alpha-L-fucosidase BPD_transp_1 PF00528.17 gi|385776886|ref|YP_005649454.1| - 2.3e-14 53.3 20.0 2.3e-14 53.3 13.9 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385776886|ref|YP_005649454.1| - 8.1e-05 21.9 0.3 8.1e-05 21.9 0.2 2.7 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BNIP3 PF06553.7 gi|385776886|ref|YP_005649454.1| - 2.6 7.3 3.7 1.2 8.4 0.4 2.0 2 0 0 2 2 2 0 BNIP3 BPD_transp_1 PF00528.17 gi|385776887|ref|YP_005649455.1| - 1.5e-34 119.1 18.4 1.5e-34 119.1 12.8 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1275 PF06912.6 gi|385776887|ref|YP_005649455.1| - 0.00087 18.5 3.5 0.00087 18.5 2.4 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF1275) ABC_tran PF00005.22 gi|385776888|ref|YP_005649456.1| - 3.9e-64 215.0 0.0 2.8e-33 115.1 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|385776888|ref|YP_005649456.1| - 5.8e-27 93.8 0.8 1.1e-18 67.2 0.1 2.3 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385776888|ref|YP_005649456.1| - 1e-19 71.5 5.2 1.5e-07 31.7 0.2 4.2 2 2 1 4 4 4 3 AAA domain AAA_10 PF12846.2 gi|385776888|ref|YP_005649456.1| - 1.5e-08 34.4 1.4 0.57 9.5 0.0 4.2 3 1 0 4 4 4 3 AAA-like domain AAA_15 PF13175.1 gi|385776888|ref|YP_005649456.1| - 2.6e-08 33.3 2.1 0.12 11.3 0.0 4.2 4 0 0 4 4 4 2 AAA ATPase domain SMC_N PF02463.14 gi|385776888|ref|YP_005649456.1| - 2.6e-08 33.3 0.3 0.00068 18.9 0.0 3.2 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385776888|ref|YP_005649456.1| - 3e-08 33.0 0.3 0.0064 16.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385776888|ref|YP_005649456.1| - 5.7e-08 33.3 0.7 0.00054 20.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|385776888|ref|YP_005649456.1| - 7.4e-08 31.7 0.6 0.00091 18.4 0.1 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|385776888|ref|YP_005649456.1| - 1.8e-07 30.7 0.0 0.061 12.7 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|385776888|ref|YP_005649456.1| - 2.7e-07 30.3 0.1 0.024 14.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|385776888|ref|YP_005649456.1| - 2.1e-06 28.0 0.0 0.024 14.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|385776888|ref|YP_005649456.1| - 4.5e-06 27.4 0.0 0.12 13.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|385776888|ref|YP_005649456.1| - 2.9e-05 24.2 7.8 0.2 11.7 1.2 3.9 2 2 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|385776888|ref|YP_005649456.1| - 5.3e-05 23.3 0.1 0.34 11.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA PF00004.24 gi|385776888|ref|YP_005649456.1| - 5.6e-05 23.3 0.4 0.5 10.5 0.0 3.4 3 1 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|385776888|ref|YP_005649456.1| - 0.00011 22.0 0.4 0.056 13.2 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|385776888|ref|YP_005649456.1| - 0.00013 22.0 0.0 0.068 13.1 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|385776888|ref|YP_005649456.1| - 0.00052 18.6 1.1 0.032 12.7 0.0 3.3 4 0 0 4 4 3 1 AAA domain PRK PF00485.13 gi|385776888|ref|YP_005649456.1| - 0.00055 19.5 0.0 0.057 12.9 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.15 gi|385776888|ref|YP_005649456.1| - 0.0011 18.7 0.3 0.76 9.4 0.1 2.3 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_19 PF13245.1 gi|385776888|ref|YP_005649456.1| - 0.0018 17.9 0.3 1.8 8.3 0.2 2.7 2 0 0 2 2 2 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|385776888|ref|YP_005649456.1| - 0.0034 16.9 0.0 2.1 7.7 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|385776888|ref|YP_005649456.1| - 0.0035 17.2 0.0 2.1 8.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|385776888|ref|YP_005649456.1| - 0.0044 15.9 0.4 0.7 8.6 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain ATP-synt_ab PF00006.20 gi|385776888|ref|YP_005649456.1| - 0.0065 15.9 0.0 0.76 9.2 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.10 gi|385776888|ref|YP_005649456.1| - 0.0072 16.0 0.4 0.3 10.7 0.0 2.6 2 0 0 2 2 2 1 NTPase IstB_IS21 PF01695.12 gi|385776888|ref|YP_005649456.1| - 0.0075 15.7 0.1 2.5 7.4 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|385776888|ref|YP_005649456.1| - 0.0081 16.0 0.3 0.35 10.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain NACHT PF05729.7 gi|385776888|ref|YP_005649456.1| - 0.011 15.4 3.1 0.29 10.7 0.0 2.7 2 0 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.16 gi|385776888|ref|YP_005649456.1| - 0.011 14.8 0.0 5.4 6.1 0.0 2.6 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI CbiA PF01656.18 gi|385776888|ref|YP_005649456.1| - 0.012 15.0 1.1 2.9 7.2 0.1 2.7 3 0 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activat PF00158.21 gi|385776888|ref|YP_005649456.1| - 0.012 15.1 0.1 1.6 8.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain KaiC PF06745.8 gi|385776888|ref|YP_005649456.1| - 0.018 14.1 1.2 1.8 7.6 0.0 3.0 3 0 0 3 3 3 0 KaiC T2SE PF00437.15 gi|385776888|ref|YP_005649456.1| - 0.019 13.9 0.0 1.4 7.7 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.9 gi|385776888|ref|YP_005649456.1| - 0.02 14.5 0.7 7 6.3 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|385776888|ref|YP_005649456.1| - 0.023 14.6 0.0 3 7.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|385776888|ref|YP_005649456.1| - 0.025 13.1 7.7 0.46 8.9 0.3 3.9 4 1 0 4 4 4 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.7 gi|385776888|ref|YP_005649456.1| - 0.036 13.1 0.4 5.4 6.0 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.11 gi|385776888|ref|YP_005649456.1| - 0.036 13.2 0.6 5.1 6.2 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.17 gi|385776888|ref|YP_005649456.1| - 0.038 13.4 0.1 0.26 10.7 0.0 2.5 4 0 0 4 4 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.1 gi|385776888|ref|YP_005649456.1| - 0.042 13.7 0.0 14 5.6 0.0 3.2 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|385776888|ref|YP_005649456.1| - 0.05 13.5 0.0 3.9 7.4 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|385776888|ref|YP_005649456.1| - 0.064 12.8 0.7 2.3 7.7 0.1 2.8 3 0 0 3 3 3 0 AAA domain zf-CCCH_2 PF14608.1 gi|385776888|ref|YP_005649456.1| - 0.13 12.3 1.1 0.23 11.4 0.8 1.4 1 0 0 1 1 1 0 Zinc finger C-x8-C-x5-C-x3-H type Aldo_ket_red PF00248.16 gi|385776889|ref|YP_005649457.1| - 6e-71 238.5 0.0 6.9e-71 238.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family SBP_bac_5 PF00496.17 gi|385776890|ref|YP_005649458.1| - 1.5e-42 145.7 9.0 2.4e-42 145.1 6.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|385776890|ref|YP_005649458.1| - 0.016 14.8 4.9 0.022 14.3 3.4 1.2 1 0 0 1 1 1 0 Rifin/stevor family DUF4064 PF13273.1 gi|385776890|ref|YP_005649458.1| - 0.017 15.1 3.7 0.45 10.6 2.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Podoplanin PF05808.6 gi|385776890|ref|YP_005649458.1| - 0.022 14.3 10.4 0.034 13.7 7.2 1.2 1 0 0 1 1 1 0 Podoplanin SSP160 PF06933.6 gi|385776890|ref|YP_005649458.1| - 0.035 12.1 17.3 0.05 11.5 12.0 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 VSP PF03302.8 gi|385776890|ref|YP_005649458.1| - 0.1 11.2 5.4 0.15 10.6 3.7 1.1 1 0 0 1 1 1 0 Giardia variant-specific surface protein DUF912 PF06024.7 gi|385776890|ref|YP_005649458.1| - 0.13 12.3 0.1 0.24 11.4 0.1 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) EssA PF10661.4 gi|385776890|ref|YP_005649458.1| - 1.1 8.8 4.3 1.9 8.1 3.0 1.3 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA TMEM154 PF15102.1 gi|385776890|ref|YP_005649458.1| - 3.2 7.4 12.6 5.1 6.7 8.7 1.3 1 0 0 1 1 1 0 TMEM154 protein family VMA21 PF09446.5 gi|385776890|ref|YP_005649458.1| - 9.3 6.2 12.0 16 5.4 7.4 2.2 2 1 0 2 2 2 0 VMA21-like domain Lipase_GDSL_2 PF13472.1 gi|385776891|ref|YP_005649459.1| - 5e-22 78.8 0.0 5.7e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|385776891|ref|YP_005649459.1| - 1.8e-16 60.6 0.0 2.1e-16 60.4 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Glyco_hydro_31 PF01055.21 gi|385776892|ref|YP_005649460.1| - 3e-139 464.6 0.1 3.7e-139 464.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|385776892|ref|YP_005649460.1| - 2.1e-18 65.9 0.0 6.2e-18 64.4 0.0 1.9 1 0 0 1 1 1 1 Galactose mutarotase-like AP_endonuc_2 PF01261.19 gi|385776893|ref|YP_005649461.1| - 1.9e-22 79.6 0.2 3.9e-21 75.3 0.2 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1687 PF07955.6 gi|385776893|ref|YP_005649461.1| - 0.011 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1687) GARS_N PF02844.10 gi|385776893|ref|YP_005649461.1| - 0.026 14.9 0.0 0.047 14.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Polysacc_deac_1 PF01522.16 gi|385776893|ref|YP_005649461.1| - 0.17 11.5 0.2 0.86 9.2 0.0 2.0 1 1 0 2 2 2 0 Polysaccharide deacetylase GFO_IDH_MocA PF01408.17 gi|385776894|ref|YP_005649462.1| - 4.5e-30 104.6 0.3 1.4e-29 103.0 0.2 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|385776894|ref|YP_005649462.1| - 2.6e-09 36.8 0.0 5.2e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|385776894|ref|YP_005649462.1| - 8.4e-06 26.1 0.1 1.4e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ox_reductase_C PF08635.5 gi|385776894|ref|YP_005649462.1| - 0.0012 18.3 0.2 0.66 9.4 0.0 2.4 1 1 1 2 2 2 2 Putative oxidoreductase C terminal Semialdhyde_dh PF01118.19 gi|385776894|ref|YP_005649462.1| - 0.008 16.4 0.3 0.018 15.3 0.2 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385776894|ref|YP_005649462.1| - 0.031 13.4 0.0 0.053 12.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BPD_transp_1 PF00528.17 gi|385776895|ref|YP_005649463.1| - 2.3e-40 138.0 15.7 2.3e-40 138.0 10.9 2.0 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|385776896|ref|YP_005649464.1| - 5e-14 52.2 20.3 5e-14 52.2 14.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385776896|ref|YP_005649464.1| - 0.00029 20.1 0.1 0.00029 20.1 0.1 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF3976 PF13121.1 gi|385776896|ref|YP_005649464.1| - 1.9 8.3 5.5 6.5 6.6 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3976) ABC_tran PF00005.22 gi|385776897|ref|YP_005649465.1| - 6.6e-28 97.7 0.0 9.3e-28 97.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385776897|ref|YP_005649465.1| - 8.5e-18 64.4 0.1 1.5e-17 63.7 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385776897|ref|YP_005649465.1| - 1.5e-13 51.3 1.0 7.6e-10 39.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|385776897|ref|YP_005649465.1| - 4.5e-07 29.2 3.2 3.6e-05 22.9 0.5 2.2 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|385776897|ref|YP_005649465.1| - 1.1e-05 24.7 0.9 3e-05 23.3 0.6 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385776897|ref|YP_005649465.1| - 0.00022 21.6 0.5 0.00041 20.7 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385776897|ref|YP_005649465.1| - 0.00051 19.5 0.1 0.0011 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|385776897|ref|YP_005649465.1| - 0.0011 18.3 0.0 0.0067 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385776897|ref|YP_005649465.1| - 0.003 17.0 0.1 0.0052 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain PRK PF00485.13 gi|385776897|ref|YP_005649465.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|385776897|ref|YP_005649465.1| - 0.017 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain KaiC PF06745.8 gi|385776897|ref|YP_005649465.1| - 0.033 13.2 0.9 0.14 11.2 0.1 2.0 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.1 gi|385776897|ref|YP_005649465.1| - 0.037 14.1 3.6 0.49 10.5 2.5 2.2 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|385776897|ref|YP_005649465.1| - 0.051 12.4 0.1 0.095 11.5 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|385776897|ref|YP_005649465.1| - 0.059 12.9 1.9 5.4 6.5 0.1 3.0 3 0 0 3 3 3 0 AAA domain DUF258 PF03193.11 gi|385776897|ref|YP_005649465.1| - 0.06 12.5 0.0 0.098 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF87 PF01935.12 gi|385776897|ref|YP_005649465.1| - 0.085 12.6 0.7 0.15 11.8 0.4 1.7 1 1 0 1 1 1 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|385776897|ref|YP_005649465.1| - 0.099 12.9 0.1 0.59 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|385776897|ref|YP_005649465.1| - 0.11 11.9 0.1 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|385776897|ref|YP_005649465.1| - 0.16 12.8 0.3 0.28 12.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|385776897|ref|YP_005649465.1| - 0.18 10.1 1.6 6.8 5.0 0.5 2.2 2 0 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|385776897|ref|YP_005649465.1| - 7.7 5.8 6.9 3.4 7.0 1.0 2.3 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.22 gi|385776898|ref|YP_005649466.1| - 3.8e-28 98.5 0.0 5e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385776898|ref|YP_005649466.1| - 1.2e-07 31.9 0.1 2.5e-07 30.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|385776898|ref|YP_005649466.1| - 5.8e-07 29.7 0.1 1.1e-06 28.8 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.14 gi|385776898|ref|YP_005649466.1| - 0.019 14.1 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|385776898|ref|YP_005649466.1| - 0.072 13.0 0.3 1.6 8.6 0.0 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PhoH PF02562.11 gi|385776898|ref|YP_005649466.1| - 0.085 12.0 0.1 0.43 9.7 0.1 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.1 gi|385776898|ref|YP_005649466.1| - 0.18 11.6 0.2 1.1 9.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain SBP_bac_5 PF00496.17 gi|385776899|ref|YP_005649467.1| - 3.4e-76 256.4 9.7 7.6e-76 255.3 6.7 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|385776899|ref|YP_005649467.1| - 0.00018 21.2 8.4 0.00028 20.6 5.8 1.2 1 0 0 1 1 1 1 Rifin/stevor family Mucin PF01456.12 gi|385776899|ref|YP_005649467.1| - 0.15 11.7 50.9 0.35 10.6 35.2 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein MGC-24 PF05283.6 gi|385776899|ref|YP_005649467.1| - 0.79 9.4 29.1 1.6 8.4 20.1 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) Peptidase_M56 PF05569.6 gi|385776899|ref|YP_005649467.1| - 1.3 7.8 4.9 2.3 7.1 3.4 1.4 1 0 0 1 1 1 0 BlaR1 peptidase M56 DUF1180 PF06679.7 gi|385776899|ref|YP_005649467.1| - 2.9 7.7 11.8 11 5.9 7.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) AJAP1_PANP_C PF15298.1 gi|385776899|ref|YP_005649467.1| - 3.5 7.4 34.2 6.5 6.5 23.7 1.4 1 0 0 1 1 1 0 AJAP1/PANP C-terminus ADH_N PF08240.7 gi|385776900|ref|YP_005649468.1| - 7.1e-20 70.7 0.3 1.2e-19 70.1 0.2 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain FAD_binding_3 PF01494.14 gi|385776900|ref|YP_005649468.1| - 0.0029 16.7 0.0 0.0045 16.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain DUF1188 PF06690.6 gi|385776900|ref|YP_005649468.1| - 0.0063 15.6 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Shikimate_DH PF01488.15 gi|385776900|ref|YP_005649468.1| - 0.018 15.1 0.0 0.047 13.8 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase SGL PF08450.7 gi|385776901|ref|YP_005649469.1| - 1.3e-75 254.0 0.0 1.4e-75 253.8 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region Arylesterase PF01731.15 gi|385776901|ref|YP_005649469.1| - 0.11 12.4 0.0 0.31 11.0 0.0 1.8 1 0 0 1 1 1 0 Arylesterase DUF608 PF04685.8 gi|385776902|ref|YP_005649470.1| - 5.5e-95 318.1 2.8 5.5e-95 318.1 1.9 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|385776902|ref|YP_005649470.1| - 8.4e-50 169.6 0.6 1.5e-49 168.7 0.4 1.4 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal DUF2139 PF09910.4 gi|385776905|ref|YP_005649473.1| - 4.4e-20 72.0 0.6 4.5e-20 71.9 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) DUF4624 PF15417.1 gi|385776905|ref|YP_005649473.1| - 0.11 12.0 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4624) Glyco_hydro_2_C PF02836.12 gi|385776906|ref|YP_005649474.1| - 6e-68 228.9 0.1 9e-68 228.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.13 gi|385776906|ref|YP_005649474.1| - 2.8e-30 105.0 2.3 5e-30 104.2 1.3 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|385776906|ref|YP_005649474.1| - 1.1e-12 48.3 0.1 3.3e-12 46.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.1 gi|385776906|ref|YP_005649474.1| - 0.00046 20.4 0.4 0.00095 19.4 0.3 1.5 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Cellulase PF00150.13 gi|385776906|ref|YP_005649474.1| - 0.011 15.0 2.8 0.06 12.5 0.2 2.6 2 1 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) Cellulase-like PF12876.2 gi|385776906|ref|YP_005649474.1| - 0.016 15.6 0.1 0.14 12.5 0.0 2.7 2 1 0 2 2 2 0 Sugar-binding cellulase-like DHDPS PF00701.17 gi|385776907|ref|YP_005649475.1| - 5.7e-38 130.1 0.0 6.8e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CENP-B_N PF04218.8 gi|385776907|ref|YP_005649475.1| - 0.0057 16.0 0.2 0.037 13.4 0.0 2.2 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Cas_Csn2 PF09711.5 gi|385776907|ref|YP_005649475.1| - 0.022 14.4 0.1 0.044 13.4 0.1 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csn2) Glyco_hydro_3 PF00933.16 gi|385776908|ref|YP_005649476.1| - 1.5e-80 270.3 0.0 1.9e-80 270.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|385776908|ref|YP_005649476.1| - 1.5e-71 240.5 0.0 2.2e-71 240.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|385776908|ref|YP_005649476.1| - 1e-23 83.0 0.0 1.8e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 Fibronectin type III-like domain Dynactin_p22 PF07426.6 gi|385776908|ref|YP_005649476.1| - 0.023 13.9 0.0 0.051 12.8 0.0 1.5 1 0 0 1 1 1 0 Dynactin subunit p22 CARDB PF07705.6 gi|385776908|ref|YP_005649476.1| - 0.037 14.0 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 CARDB Peptidase_S9 PF00326.16 gi|385776909|ref|YP_005649477.1| - 9.1e-05 21.7 0.0 0.0001 21.6 0.0 1.0 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|385776909|ref|YP_005649477.1| - 0.004 16.9 0.0 0.0048 16.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family UPF0227 PF05728.7 gi|385776909|ref|YP_005649477.1| - 0.015 15.0 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) UPF0122 PF04297.9 gi|385776909|ref|YP_005649477.1| - 0.042 13.8 0.4 0.073 13.0 0.1 1.5 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like AXE1 PF05448.7 gi|385776909|ref|YP_005649477.1| - 0.096 11.1 0.0 0.1 11.0 0.0 1.0 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) AP_endonuc_2 PF01261.19 gi|385776910|ref|YP_005649478.1| - 6.5e-30 104.0 0.0 8.8e-30 103.5 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PIN PF01850.16 gi|385776912|ref|YP_005649480.1| - 5.4e-06 26.7 0.0 7.7e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 PIN domain CcdA PF07362.7 gi|385776913|ref|YP_005649481.1| - 0.0014 18.4 1.6 0.0019 18.0 1.1 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA CENP-F_leu_zip PF10473.4 gi|385776913|ref|YP_005649481.1| - 0.0093 15.8 2.6 0.011 15.6 1.8 1.0 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Vhr1 PF04001.8 gi|385776913|ref|YP_005649481.1| - 0.013 15.4 0.2 0.015 15.1 0.1 1.2 1 0 0 1 1 1 0 Transcription factor Vhr1 RHH_1 PF01402.16 gi|385776913|ref|YP_005649481.1| - 0.083 12.8 5.3 0.12 12.2 0.5 2.9 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family Imm2 PF14426.1 gi|385776913|ref|YP_005649481.1| - 0.093 12.7 0.5 0.18 11.8 0.1 1.7 1 1 1 2 2 2 0 Immunity protein Imm2 Pox_VLTF3 PF04947.9 gi|385776913|ref|YP_005649481.1| - 0.13 11.7 1.9 0.16 11.4 1.3 1.1 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like Kri1 PF05178.7 gi|385776913|ref|YP_005649481.1| - 2.5 8.4 5.2 3.4 7.9 3.6 1.4 1 1 0 1 1 1 0 KRI1-like family DUF772 PF05598.6 gi|385776914|ref|YP_005649482.1| - 0.00025 20.8 0.0 0.00066 19.5 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|385776914|ref|YP_005649482.1| - 0.0056 16.2 0.0 0.043 13.3 0.0 2.0 1 1 1 2 2 2 1 Transposase DDE domain MR_MLE_N PF02746.11 gi|385776915|ref|YP_005649483.1| - 0.00031 20.7 0.0 0.00038 20.4 0.0 1.2 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Bac_rhamnosid PF05592.6 gi|385776916|ref|YP_005649484.1| - 2e-152 507.9 0.0 3e-152 507.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Bac_rhamnosid_N PF08531.5 gi|385776916|ref|YP_005649484.1| - 6.9e-47 159.1 0.0 1.2e-46 158.3 0.0 1.4 1 0 0 1 1 1 1 Alpha-L-rhamnosidase N-terminal domain Glyco_hydro_31 PF01055.21 gi|385776921|ref|YP_005649489.1| - 1.3e-136 455.9 1.4 1.7e-136 455.6 1.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|385776921|ref|YP_005649489.1| - 5e-07 29.4 0.5 5e-07 29.4 0.3 2.8 3 1 0 3 3 3 1 Galactose mutarotase-like Glyco_hydro_1 PF00232.13 gi|385776923|ref|YP_005649491.1| - 1e-64 218.4 5.3 7.4e-58 195.8 1.3 2.4 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|385776923|ref|YP_005649491.1| - 3.3e-05 23.2 0.0 5.9e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) MFS_1 PF07690.11 gi|385776924|ref|YP_005649492.1| - 4.1e-16 58.6 26.3 2.6e-09 36.2 4.9 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|385776924|ref|YP_005649492.1| - 0.00035 18.8 1.0 0.00035 18.8 0.7 1.7 1 1 1 2 2 2 1 Transmembrane secretion effector FA_desaturase PF00487.19 gi|385776924|ref|YP_005649492.1| - 1.7 8.0 7.8 3.7 6.9 2.1 2.3 1 1 1 2 2 2 0 Fatty acid desaturase Amidohydro_2 PF04909.9 gi|385776925|ref|YP_005649493.1| - 6.7e-40 137.3 0.0 8.3e-40 137.0 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|385776925|ref|YP_005649493.1| - 3.5e-05 23.1 0.0 6.6e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 TatD related DNase GFO_IDH_MocA PF01408.17 gi|385776926|ref|YP_005649494.1| - 4.4e-28 98.2 0.0 7e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|385776926|ref|YP_005649494.1| - 0.073 13.4 0.2 0.18 12.2 0.1 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Aldo_ket_red PF00248.16 gi|385776928|ref|YP_005649496.1| - 1.4e-72 243.8 0.1 1.6e-72 243.7 0.1 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Terminase_4 PF05119.7 gi|385776928|ref|YP_005649496.1| - 0.11 12.6 0.0 0.4 10.8 0.0 1.9 1 1 0 1 1 1 0 Phage terminase, small subunit GFO_IDH_MocA PF01408.17 gi|385776929|ref|YP_005649497.1| - 1.7e-20 73.6 0.0 2.7e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|385776929|ref|YP_005649497.1| - 4e-07 29.8 0.0 6.4e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|385776929|ref|YP_005649497.1| - 0.093 12.5 0.0 0.61 9.9 0.0 2.0 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|385776929|ref|YP_005649497.1| - 0.094 12.8 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Laminin_B PF00052.13 gi|385776929|ref|YP_005649497.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Laminin B (Domain IV) DUF1854 PF08909.6 gi|385776930|ref|YP_005649498.1| - 7.2e-46 155.0 2.8 1.1e-45 154.5 0.4 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1854) ABC_membrane PF00664.18 gi|385776930|ref|YP_005649498.1| - 1.3e-42 146.1 7.9 1.3e-42 146.1 5.5 1.4 2 0 0 2 2 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|385776930|ref|YP_005649498.1| - 1.8e-35 122.2 0.0 5.4e-35 120.6 0.0 1.9 2 0 0 2 2 1 1 ABC transporter AAA_17 PF13207.1 gi|385776930|ref|YP_005649498.1| - 3.8e-05 24.4 3.3 4.2e-05 24.3 0.1 2.8 3 0 0 3 3 1 1 AAA domain SMC_N PF02463.14 gi|385776930|ref|YP_005649498.1| - 9e-05 21.7 1.9 0.014 14.6 0.0 2.5 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|385776930|ref|YP_005649498.1| - 0.00018 21.0 0.1 0.049 13.0 0.0 3.8 4 1 0 4 4 4 1 AAA-like domain ABC_membrane_3 PF13748.1 gi|385776930|ref|YP_005649498.1| - 0.00042 19.4 5.1 0.0006 18.9 2.0 2.2 2 1 0 2 2 2 1 ABC transporter transmembrane region DUF87 PF01935.12 gi|385776930|ref|YP_005649498.1| - 0.0011 18.7 0.2 0.0049 16.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|385776930|ref|YP_005649498.1| - 0.0013 18.2 0.1 0.0031 16.9 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385776930|ref|YP_005649498.1| - 0.0014 18.7 0.8 0.029 14.4 0.1 3.0 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|385776930|ref|YP_005649498.1| - 0.0028 17.9 0.5 0.0028 17.9 0.4 3.7 3 1 1 4 4 4 1 AAA domain ATP-synt_ab PF00006.20 gi|385776930|ref|YP_005649498.1| - 0.015 14.8 0.1 2.1 7.7 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|385776930|ref|YP_005649498.1| - 0.034 13.8 0.1 0.84 9.3 0.0 3.0 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|385776930|ref|YP_005649498.1| - 0.041 13.3 0.0 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|385776930|ref|YP_005649498.1| - 0.043 14.0 4.4 1.2 9.2 0.0 3.2 3 1 0 3 3 2 0 RNA helicase Zeta_toxin PF06414.7 gi|385776930|ref|YP_005649498.1| - 0.053 12.6 0.0 0.25 10.4 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin DUF258 PF03193.11 gi|385776930|ref|YP_005649498.1| - 0.059 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|385776930|ref|YP_005649498.1| - 0.06 13.0 1.4 0.12 12.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|385776930|ref|YP_005649498.1| - 0.063 13.2 1.1 0.4 10.6 0.0 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|385776930|ref|YP_005649498.1| - 0.069 13.1 0.0 0.4 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Phage_CI_repr PF07022.8 gi|385776930|ref|YP_005649498.1| - 0.11 12.6 0.0 0.29 11.2 0.0 1.7 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain AAA_23 PF13476.1 gi|385776930|ref|YP_005649498.1| - 0.11 12.7 0.0 0.11 12.7 0.0 3.3 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|385776930|ref|YP_005649498.1| - 0.14 11.5 0.0 0.58 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385776930|ref|YP_005649498.1| - 0.15 11.9 0.0 0.4 10.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|385776930|ref|YP_005649498.1| - 0.17 11.2 0.1 0.17 11.2 0.0 2.3 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain ChlamPMP_M PF07548.6 gi|385776930|ref|YP_005649498.1| - 0.21 11.3 0.6 0.98 9.1 0.0 2.1 2 0 0 2 2 2 0 Chlamydia polymorphic membrane protein middle domain GFO_IDH_MocA PF01408.17 gi|385776931|ref|YP_005649499.1| - 4.6e-23 82.0 0.0 6.9e-23 81.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|385776931|ref|YP_005649499.1| - 2.6e-07 30.4 0.0 7.2e-07 28.9 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Cutinase PF01083.17 gi|385776931|ref|YP_005649499.1| - 0.057 13.1 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Cutinase TRSP PF12500.3 gi|385776931|ref|YP_005649499.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 TRSP domain C terminus to PRTase_2 MFS_1 PF07690.11 gi|385776932|ref|YP_005649500.1| - 1e-18 67.2 42.8 1.6e-10 40.2 10.4 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily BP28CT PF08146.7 gi|385776932|ref|YP_005649500.1| - 1.2 8.8 3.3 10 5.8 0.0 3.2 4 0 0 4 4 4 0 BP28CT (NUC211) domain Ald_Xan_dh_C2 PF02738.13 gi|385776933|ref|YP_005649501.1| - 4.1e-121 405.0 0.0 5.2e-121 404.6 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385776933|ref|YP_005649501.1| - 3.2e-17 62.5 1.0 2.4e-15 56.5 0.3 3.0 2 1 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GFO_IDH_MocA PF01408.17 gi|385776935|ref|YP_005649503.1| - 1.3e-14 54.7 0.0 2.3e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|385776935|ref|YP_005649503.1| - 0.028 14.2 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain G6PD_N PF00479.17 gi|385776935|ref|YP_005649503.1| - 0.094 12.9 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain DUF4434 PF14488.1 gi|385776936|ref|YP_005649504.1| - 6.8e-07 29.1 0.0 1.7e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4434) Cellulase PF00150.13 gi|385776936|ref|YP_005649504.1| - 3.2e-06 26.5 0.0 5.5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42M PF08532.5 gi|385776936|ref|YP_005649504.1| - 3.6e-05 23.0 0.0 5.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_42 PF02449.10 gi|385776936|ref|YP_005649504.1| - 0.00077 18.6 0.0 0.01 14.9 0.0 2.1 2 0 0 2 2 2 1 Beta-galactosidase Glyco_hydro_72 PF03198.9 gi|385776936|ref|YP_005649504.1| - 0.026 13.5 0.0 0.1 11.5 0.0 1.9 1 1 0 1 1 1 0 Glucanosyltransferase Glyco_hydro_38 PF01074.17 gi|385776937|ref|YP_005649505.1| - 2.4e-75 253.3 0.0 3.7e-75 252.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|385776937|ref|YP_005649505.1| - 5.8e-74 249.5 3.7 1.1e-73 248.5 2.6 1.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|385776937|ref|YP_005649505.1| - 2e-18 66.3 0.1 4.2e-18 65.3 0.1 1.6 1 0 0 1 1 1 1 Alpha mannosidase, middle domain CIA30 PF08547.7 gi|385776937|ref|YP_005649505.1| - 0.065 13.0 0.0 0.26 11.1 0.0 2.0 2 0 0 2 2 2 0 Complex I intermediate-associated protein 30 (CIA30) adh_short PF00106.20 gi|385776938|ref|YP_005649506.1| - 1.3e-29 103.2 0.0 2.4e-29 102.4 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385776938|ref|YP_005649506.1| - 2.1e-25 89.9 0.0 3e-25 89.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385776938|ref|YP_005649506.1| - 5e-09 36.0 0.0 8e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|385776938|ref|YP_005649506.1| - 0.00033 19.8 0.1 0.034 13.2 0.0 2.5 3 0 0 3 3 3 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.16 gi|385776938|ref|YP_005649506.1| - 0.0026 17.2 0.2 0.0046 16.4 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Choline_kin_N PF04428.9 gi|385776938|ref|YP_005649506.1| - 0.1 12.0 0.0 0.52 9.8 0.0 2.1 2 0 0 2 2 2 0 Choline kinase N terminus DDE_Tnp_IS240 PF13610.1 gi|385776940|ref|YP_005649508.1| - 8.4e-06 25.8 0.1 4.5e-05 23.4 0.1 2.1 2 1 0 2 2 2 1 DDE domain HTH_23 PF13384.1 gi|385776940|ref|YP_005649508.1| - 6.7e-05 22.3 0.9 0.0029 17.2 0.0 2.9 3 0 0 3 3 3 1 Homeodomain-like domain DDE_Tnp_IS66 PF03050.9 gi|385776940|ref|YP_005649508.1| - 0.00065 18.9 0.0 0.0018 17.5 0.0 1.8 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|385776940|ref|YP_005649508.1| - 0.011 15.7 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain HTH_psq PF05225.11 gi|385776940|ref|YP_005649508.1| - 0.021 14.3 0.1 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_28 PF13518.1 gi|385776940|ref|YP_005649508.1| - 0.027 14.4 1.3 0.66 10.0 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain ADH_N PF08240.7 gi|385776941|ref|YP_005649509.1| - 3.8e-17 62.0 0.0 6e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Shikimate_DH PF01488.15 gi|385776941|ref|YP_005649509.1| - 5.9e-05 23.1 0.0 0.00022 21.3 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|385776941|ref|YP_005649509.1| - 0.0069 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|385776941|ref|YP_005649509.1| - 0.019 14.1 0.0 0.053 12.6 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|385776941|ref|YP_005649509.1| - 0.069 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Glyco_tranf_2_3 PF13641.1 gi|385776942|ref|YP_005649510.1| - 1.6e-20 73.8 0.0 2.3e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|385776942|ref|YP_005649510.1| - 5.4e-17 62.1 0.1 5.4e-17 62.1 0.1 2.7 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|385776942|ref|YP_005649510.1| - 7.7e-15 54.9 0.1 1.4e-14 54.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|385776942|ref|YP_005649510.1| - 3.8e-11 42.5 0.0 7.8e-11 41.5 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 DUF2517 PF10725.4 gi|385776942|ref|YP_005649510.1| - 0.067 12.8 1.0 0.14 11.8 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2517) DUF4293 PF14126.1 gi|385776942|ref|YP_005649510.1| - 3.9 7.3 10.2 0.87 9.4 2.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4293) Cpn60_TCP1 PF00118.19 gi|385776943|ref|YP_005649511.1| - 3.4e-146 487.6 17.4 4e-146 487.4 12.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family MR_MLE_C PF13378.1 gi|385776944|ref|YP_005649512.1| - 5.1e-24 84.3 0.0 1.2e-23 83.1 0.0 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|385776944|ref|YP_005649512.1| - 3.4e-16 59.5 0.0 4.8e-15 55.8 0.0 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|385776944|ref|YP_005649512.1| - 7.7e-11 42.0 0.0 1.3e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Flu_NS2 PF00601.14 gi|385776944|ref|YP_005649512.1| - 0.15 12.2 0.0 0.55 10.4 0.0 1.9 2 0 0 2 2 2 0 Influenza non-structural protein (NS2) 3HCDH_N PF02737.13 gi|385776945|ref|YP_005649513.1| - 1.5e-66 223.4 0.2 2.3e-66 222.8 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|385776945|ref|YP_005649513.1| - 1.9e-40 137.1 0.1 8.5e-27 93.3 0.0 2.8 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|385776945|ref|YP_005649513.1| - 1.8e-05 24.6 0.0 4e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|385776945|ref|YP_005649513.1| - 1.9e-05 24.4 0.0 3.8e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|385776945|ref|YP_005649513.1| - 0.00093 19.5 0.0 0.0024 18.2 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|385776945|ref|YP_005649513.1| - 0.0077 15.6 0.1 0.016 14.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385776945|ref|YP_005649513.1| - 0.05 12.7 0.3 0.2 10.8 0.2 2.0 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|385776945|ref|YP_005649513.1| - 0.11 12.9 0.1 0.44 10.9 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Methyltransf_18 PF12847.2 gi|385776945|ref|YP_005649513.1| - 0.16 12.5 0.0 0.34 11.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Nramp PF01566.13 gi|385776946|ref|YP_005649514.1| - 2.7e-41 141.5 23.5 3.7e-41 141.1 16.3 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF418 PF04235.7 gi|385776946|ref|YP_005649514.1| - 2.8 7.5 15.6 0.018 14.7 2.9 3.0 1 1 1 4 4 4 0 Protein of unknown function (DUF418) DUF3954 PF13128.1 gi|385776947|ref|YP_005649515.1| - 9.8 5.6 6.3 3.9 6.9 0.8 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3954) PRA1 PF03208.14 gi|385776948|ref|YP_005649516.1| - 0.3 10.4 6.8 0.073 12.4 1.6 1.9 2 0 0 2 2 2 0 PRA1 family protein GHMP_kinases_N PF00288.21 gi|385776950|ref|YP_005649518.1| - 1.6e-09 37.6 0.6 3.2e-09 36.7 0.4 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_N PF00288.21 gi|385776951|ref|YP_005649519.1| - 1.2e-13 50.8 0.4 3.1e-13 49.5 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385776951|ref|YP_005649519.1| - 3.5e-06 27.1 0.5 1.3e-05 25.2 0.3 2.0 1 1 0 1 1 1 1 GHMP kinases C terminal TrmB PF01978.14 gi|385776952|ref|YP_005649520.1| - 0.00062 19.4 0.6 1.1 8.9 0.0 2.9 3 1 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB TINF2_N PF14973.1 gi|385776952|ref|YP_005649520.1| - 0.0013 18.8 0.5 0.0026 17.9 0.4 1.5 1 0 0 1 1 1 1 TERF1-interacting nuclear factor 2 N-terminus Penicillinase_R PF03965.11 gi|385776952|ref|YP_005649520.1| - 0.0018 18.3 0.3 0.027 14.5 0.0 2.6 1 1 1 3 3 3 1 Penicillinase repressor Exo70 PF03081.10 gi|385776952|ref|YP_005649520.1| - 0.0052 15.6 1.1 0.0089 14.8 0.6 1.5 1 1 0 1 1 1 1 Exo70 exocyst complex subunit AKNA PF12443.3 gi|385776952|ref|YP_005649520.1| - 0.014 15.3 0.2 0.036 14.0 0.1 1.7 1 0 0 1 1 1 0 AT-hook-containing transcription factor Phage_Nu1 PF07471.7 gi|385776952|ref|YP_005649520.1| - 0.028 13.9 0.2 0.065 12.7 0.0 1.6 2 0 0 2 2 2 0 Phage DNA packaging protein Nu1 ACDC PF14733.1 gi|385776952|ref|YP_005649520.1| - 0.06 13.4 0.6 0.23 11.6 0.2 2.2 2 1 0 2 2 2 0 AP2-coincident C-terminal EF-hand_2 PF09068.6 gi|385776952|ref|YP_005649520.1| - 0.11 12.6 0.6 0.2 11.7 0.2 1.5 1 1 0 1 1 1 0 EF hand Fib_alpha PF08702.5 gi|385776952|ref|YP_005649520.1| - 0.57 10.3 4.9 0.41 10.7 2.0 1.9 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF2951 PF11166.3 gi|385776952|ref|YP_005649520.1| - 0.66 9.8 3.9 13 5.7 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) SapB_1 PF05184.10 gi|385776952|ref|YP_005649520.1| - 8 6.4 7.7 9.5 6.1 0.0 3.9 4 0 0 4 4 4 0 Saposin-like type B, region 1 HTH_45 PF14947.1 gi|385776953|ref|YP_005649521.1| - 3.2e-24 84.5 1.3 4.4e-24 84.0 0.9 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix rRNA_processing PF08524.6 gi|385776953|ref|YP_005649521.1| - 6.4e-05 22.7 0.4 7.4e-05 22.5 0.3 1.1 1 0 0 1 1 1 1 rRNA processing HTH_24 PF13412.1 gi|385776953|ref|YP_005649521.1| - 0.00017 20.9 0.9 0.00045 19.5 0.6 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4364 PF14277.1 gi|385776953|ref|YP_005649521.1| - 0.0002 21.0 1.5 0.00042 19.9 1.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) DUF2250 PF10007.4 gi|385776953|ref|YP_005649521.1| - 0.004 17.0 0.3 0.013 15.4 0.1 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|385776953|ref|YP_005649521.1| - 0.0041 17.2 0.0 0.0063 16.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HxlR PF01638.12 gi|385776953|ref|YP_005649521.1| - 0.01 15.4 0.1 0.028 14.0 0.1 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|385776953|ref|YP_005649521.1| - 0.021 14.4 0.3 0.082 12.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Mrr_N PF14338.1 gi|385776953|ref|YP_005649521.1| - 0.023 14.7 0.3 0.044 13.8 0.0 1.7 2 1 0 2 2 2 0 Mrr N-terminal domain TrmB PF01978.14 gi|385776953|ref|YP_005649521.1| - 0.058 13.1 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.11 gi|385776953|ref|YP_005649521.1| - 0.067 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain Ribosomal_S25 PF03297.10 gi|385776953|ref|YP_005649521.1| - 0.087 12.8 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 S25 ribosomal protein FaeA PF04703.7 gi|385776953|ref|YP_005649521.1| - 0.13 12.3 0.0 1.2 9.3 0.0 2.1 2 1 0 2 2 2 0 FaeA-like protein Mago_nashi PF02792.9 gi|385776953|ref|YP_005649521.1| - 0.15 11.7 0.8 0.16 11.6 0.5 1.1 1 0 0 1 1 1 0 Mago nashi protein NicO PF03824.11 gi|385776954|ref|YP_005649522.1| - 0.0045 16.3 3.8 0.0045 16.3 2.7 2.3 1 1 0 2 2 2 1 High-affinity nickel-transport protein Got1 PF04178.7 gi|385776954|ref|YP_005649522.1| - 3.4 7.7 13.4 57 3.8 9.3 2.3 1 1 0 1 1 1 0 Got1/Sft2-like family Glycos_transf_1 PF00534.15 gi|385776955|ref|YP_005649523.1| - 1.1e-11 44.5 0.1 2.5e-11 43.3 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385776955|ref|YP_005649523.1| - 7.5e-11 42.3 0.1 9.8e-09 35.4 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385776955|ref|YP_005649523.1| - 5.9e-05 22.8 0.1 0.007 16.1 0.1 2.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|385776955|ref|YP_005649523.1| - 0.0063 16.7 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385776955|ref|YP_005649523.1| - 0.11 12.6 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain HTH_WhiA PF02650.9 gi|385776957|ref|YP_005649525.1| - 0.01 16.2 0.0 0.011 16.0 0.0 1.1 1 0 0 1 1 1 0 WhiA C-terminal HTH domain HTH_24 PF13412.1 gi|385776957|ref|YP_005649525.1| - 0.017 14.4 0.1 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.13 gi|385776957|ref|YP_005649525.1| - 0.071 13.1 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Transposase Epimerase PF01370.16 gi|385776958|ref|YP_005649526.1| - 3.9e-13 49.3 0.0 9e-13 48.1 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385776958|ref|YP_005649526.1| - 8.8e-09 34.6 0.0 3.8e-08 32.5 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|385776958|ref|YP_005649526.1| - 2.6e-08 34.0 0.0 3.4e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|385776958|ref|YP_005649526.1| - 1.6e-07 30.8 0.0 2.5e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|385776958|ref|YP_005649526.1| - 6.5e-06 25.0 0.2 7e-05 21.6 0.1 2.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_2 PF03446.10 gi|385776958|ref|YP_005649526.1| - 9.9e-05 22.2 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_4 PF07993.7 gi|385776958|ref|YP_005649526.1| - 0.0018 17.2 0.0 0.39 9.6 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein AlaDh_PNT_C PF01262.16 gi|385776958|ref|YP_005649526.1| - 0.036 13.6 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Glyco_transf_4 PF13439.1 gi|385776958|ref|YP_005649526.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 2-Hacid_dh_C PF02826.14 gi|385776958|ref|YP_005649526.1| - 0.079 12.1 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Cache_2 PF08269.6 gi|385776958|ref|YP_005649526.1| - 0.12 12.4 0.1 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 Cache domain Esterase PF00756.15 gi|385776960|ref|YP_005649528.1| - 3.4e-16 59.4 0.0 9.3e-16 57.9 0.0 1.6 1 1 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|385776960|ref|YP_005649528.1| - 0.00055 19.2 0.0 0.0019 17.4 0.0 1.7 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|385776960|ref|YP_005649528.1| - 0.0018 18.0 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family BAAT_C PF08840.6 gi|385776960|ref|YP_005649528.1| - 0.0024 17.6 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Chlorophyllase PF07224.6 gi|385776960|ref|YP_005649528.1| - 0.0039 16.0 0.0 0.0064 15.3 0.0 1.4 1 1 0 1 1 1 1 Chlorophyllase Chlorophyllase2 PF12740.2 gi|385776960|ref|YP_005649528.1| - 0.0073 15.2 0.0 0.016 14.1 0.0 1.6 1 1 0 1 1 1 1 Chlorophyllase enzyme DUF915 PF06028.6 gi|385776960|ref|YP_005649528.1| - 0.049 12.7 0.1 0.1 11.6 0.1 1.5 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) Autoind_bind PF03472.10 gi|385776960|ref|YP_005649528.1| - 0.073 12.3 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Autoinducer binding domain Abhydrolase_1 PF00561.15 gi|385776960|ref|YP_005649528.1| - 0.15 11.5 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF309 PF03745.9 gi|385776960|ref|YP_005649528.1| - 0.84 9.1 3.2 9.5 5.7 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF309) IF-2B PF01008.12 gi|385776961|ref|YP_005649529.1| - 5.7e-74 248.6 0.1 6.8e-74 248.3 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ProRS-C_2 PF09181.5 gi|385776961|ref|YP_005649529.1| - 3.1 7.7 6.3 25 4.9 0.1 3.9 4 0 0 4 4 4 0 Prolyl-tRNA synthetase, C-terminal DUF95 PF01944.12 gi|385776962|ref|YP_005649530.1| - 7.3e-16 58.2 13.0 1.5e-15 57.2 9.0 1.5 1 0 0 1 1 1 1 Integral membrane protein DUF95 MIT PF04212.13 gi|385776962|ref|YP_005649530.1| - 0.01 15.7 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain DUF1404 PF07185.6 gi|385776964|ref|YP_005649532.1| - 6.1e-56 188.6 18.6 7.2e-56 188.3 12.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Caa3_CtaG PF09678.5 gi|385776964|ref|YP_005649532.1| - 0.00039 19.4 3.4 0.00039 19.4 2.4 2.2 1 1 1 2 2 2 2 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF1230 PF06799.6 gi|385776964|ref|YP_005649532.1| - 0.051 13.4 0.5 0.051 13.4 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1230) MscL PF01741.13 gi|385776964|ref|YP_005649532.1| - 3.1 7.9 7.6 8.1 6.6 0.0 2.9 3 1 0 3 3 3 0 Large-conductance mechanosensitive channel, MscL MARVEL PF01284.18 gi|385776964|ref|YP_005649532.1| - 6.9 6.4 10.0 16 5.2 0.0 2.6 2 1 0 2 2 2 0 Membrane-associating domain Abi PF02517.11 gi|385776964|ref|YP_005649532.1| - 7.9 6.6 16.9 4e+02 1.2 11.7 2.7 1 1 0 1 1 1 0 CAAX protease self-immunity COX1 PF00115.15 gi|385776965|ref|YP_005649533.1| - 3.8e-132 441.0 59.7 3.8e-132 441.0 41.4 2.5 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|385776965|ref|YP_005649533.1| - 4.6e-19 68.8 18.0 4.6e-19 68.8 12.5 2.7 2 0 0 2 2 2 1 Cytochrome c oxidase subunit III SoxE PF06525.6 gi|385776966|ref|YP_005649534.1| - 5.6e-79 263.9 15.2 6.4e-79 263.7 10.5 1.0 1 0 0 1 1 1 1 Sulfocyanin (SoxE) Copper-bind PF00127.15 gi|385776966|ref|YP_005649534.1| - 0.016 15.4 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_2 PF07731.9 gi|385776966|ref|YP_005649534.1| - 0.022 14.2 0.3 0.059 12.8 0.1 1.8 2 0 0 2 2 2 0 Multicopper oxidase DUF2371 PF10177.4 gi|385776966|ref|YP_005649534.1| - 0.028 14.2 0.1 0.06 13.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Rieske PF00355.21 gi|385776967|ref|YP_005649535.1| - 4.5e-16 58.2 0.0 7.9e-16 57.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|385776967|ref|YP_005649535.1| - 0.13 12.3 0.2 0.33 11.0 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|385776968|ref|YP_005649536.1| - 4.8e-32 111.0 7.9 4.8e-32 111.0 5.5 2.3 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|385776968|ref|YP_005649536.1| - 9.2e-07 28.3 9.9 9.2e-07 28.3 6.9 3.1 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|385776968|ref|YP_005649536.1| - 0.0015 17.9 12.8 0.075 12.4 0.3 3.2 2 1 1 3 3 3 2 Prokaryotic cytochrome b561 Cytochrom_B_C PF00032.12 gi|385776968|ref|YP_005649536.1| - 0.0034 17.5 3.7 0.0034 17.5 2.5 4.0 5 2 1 6 6 6 1 Cytochrome b(C-terminal)/b6/petD COX2 PF00116.15 gi|385776969|ref|YP_005649537.1| - 1.6e-20 73.1 0.2 3.1e-19 68.9 0.0 2.1 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|385776969|ref|YP_005649537.1| - 1.3e-05 25.0 0.0 1.7e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain Yip1 PF04893.12 gi|385776970|ref|YP_005649538.1| - 0.25 10.8 17.7 0.34 10.3 12.3 1.1 1 0 0 1 1 1 0 Yip1 domain PalH PF08733.5 gi|385776970|ref|YP_005649538.1| - 0.6 8.8 14.1 0.75 8.5 9.8 1.2 1 0 0 1 1 1 0 PalH/RIM21 CHD5 PF04420.9 gi|385776970|ref|YP_005649538.1| - 1.3 8.6 5.0 0.39 10.3 1.5 1.6 2 0 0 2 2 2 0 CHD5-like protein GWT1 PF06423.7 gi|385776970|ref|YP_005649538.1| - 3 7.9 10.5 9.5 6.3 0.1 2.3 1 1 1 2 2 2 0 GWT1 DUF4179 PF13786.1 gi|385776971|ref|YP_005649539.1| - 0.13 12.4 5.6 0.87 9.8 0.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4179) Epiglycanin_C PF14654.1 gi|385776971|ref|YP_005649539.1| - 7.3 6.6 7.9 5.4 7.0 0.2 2.3 1 1 0 2 2 2 0 Mucin, catalytic, TM and cytoplasmic tail region Na_H_Exchanger PF00999.16 gi|385776973|ref|YP_005649541.1| - 3.3e-28 98.3 54.2 3.3e-28 98.3 37.6 2.1 3 0 0 3 3 3 1 Sodium/hydrogen exchanger family Lamp PF01299.12 gi|385776973|ref|YP_005649541.1| - 0.16 11.0 0.2 0.25 10.4 0.2 1.2 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) Med30 PF11315.3 gi|385776974|ref|YP_005649542.1| - 0.023 14.8 0.8 0.024 14.7 0.5 1.1 1 0 0 1 1 1 0 Mediator complex subunit 30 IRF-2BP1_2 PF11261.3 gi|385776974|ref|YP_005649542.1| - 0.056 12.9 0.4 0.069 12.6 0.3 1.3 1 0 0 1 1 1 0 Interferon regulatory factor 2-binding protein zinc finger Thioredoxin_3 PF13192.1 gi|385776974|ref|YP_005649542.1| - 0.54 10.1 2.7 1.7 8.5 1.9 1.8 1 1 0 1 1 1 0 Thioredoxin domain DUF929 PF06053.6 gi|385776975|ref|YP_005649543.1| - 2.3e-23 82.5 3.0 2.4e-23 82.4 2.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) DUF4322 PF14210.1 gi|385776976|ref|YP_005649544.1| - 3.8e-38 128.7 0.1 9.1e-38 127.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385776976|ref|YP_005649544.1| - 0.0033 17.2 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DDE_5 PF13546.1 gi|385776976|ref|YP_005649544.1| - 0.0034 16.2 0.0 0.0072 15.2 0.0 1.5 2 0 0 2 2 2 1 DDE superfamily endonuclease DUF929 PF06053.6 gi|385776977|ref|YP_005649545.1| - 1.9e-50 171.3 3.4 2.3e-50 171.0 2.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) PsbY PF06298.6 gi|385776977|ref|YP_005649545.1| - 0.07 12.6 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 Photosystem II protein Y (PsbY) Methyltransf_11 PF08241.7 gi|385776978|ref|YP_005649546.1| - 1.3e-10 41.6 0.0 1.9e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385776978|ref|YP_005649546.1| - 6.7e-09 35.4 0.2 9.6e-09 34.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385776978|ref|YP_005649546.1| - 1e-06 29.2 0.1 2.3e-06 28.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385776978|ref|YP_005649546.1| - 1.7e-05 24.0 0.6 3.3e-05 23.1 0.4 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|385776978|ref|YP_005649546.1| - 8.2e-05 22.0 0.0 0.00016 21.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|385776978|ref|YP_005649546.1| - 0.00017 21.9 0.1 0.00031 21.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385776978|ref|YP_005649546.1| - 0.00026 20.7 0.0 0.00037 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385776978|ref|YP_005649546.1| - 0.0037 17.2 0.0 0.017 15.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385776978|ref|YP_005649546.1| - 0.0071 16.6 0.0 0.013 15.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|385776978|ref|YP_005649546.1| - 0.0082 15.6 0.0 0.0096 15.3 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.15 gi|385776978|ref|YP_005649546.1| - 0.02 13.9 0.1 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|385776978|ref|YP_005649546.1| - 0.049 12.7 0.0 0.063 12.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|385776978|ref|YP_005649546.1| - 0.058 12.9 0.0 0.077 12.5 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|385776978|ref|YP_005649546.1| - 0.081 12.2 0.2 0.21 10.9 0.1 1.8 1 1 1 2 2 2 0 Methionine biosynthesis protein MetW FmrO PF07091.6 gi|385776978|ref|YP_005649546.1| - 0.097 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) SBP_bac_5 PF00496.17 gi|385776979|ref|YP_005649547.1| - 9.5e-63 212.2 0.5 3.4e-62 210.4 0.4 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4307 PF14155.1 gi|385776979|ref|YP_005649547.1| - 0.0069 16.1 0.1 0.014 15.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4307) Shisa PF13908.1 gi|385776979|ref|YP_005649547.1| - 0.023 14.8 0.4 0.045 13.9 0.3 1.4 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF1510 PF07423.6 gi|385776979|ref|YP_005649547.1| - 0.053 12.8 0.1 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) SP_C-Propep PF08999.5 gi|385776979|ref|YP_005649547.1| - 0.073 12.5 0.1 0.19 11.2 0.1 1.7 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide DUF2371 PF10177.4 gi|385776979|ref|YP_005649547.1| - 0.1 12.4 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) BPD_transp_1 PF00528.17 gi|385776980|ref|YP_005649548.1| - 7.5e-42 142.9 12.6 7.5e-42 142.9 8.7 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|385776981|ref|YP_005649549.1| - 1.7e-28 99.4 11.4 1.7e-28 99.4 7.9 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385776981|ref|YP_005649549.1| - 0.018 14.3 2.4 0.018 14.3 1.6 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C PIG-P PF08510.7 gi|385776981|ref|YP_005649549.1| - 1.2 8.7 4.6 0.22 11.1 0.3 1.9 2 0 0 2 2 2 0 PIG-P ABC_tran PF00005.22 gi|385776982|ref|YP_005649550.1| - 1.5e-29 103.0 0.0 2.6e-29 102.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385776982|ref|YP_005649550.1| - 8e-16 58.1 0.0 1.5e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385776982|ref|YP_005649550.1| - 1.9e-11 44.4 5.2 6.6e-11 42.7 3.6 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385776982|ref|YP_005649550.1| - 2.3e-06 27.0 2.5 6.2e-06 25.5 1.7 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385776982|ref|YP_005649550.1| - 0.00067 19.1 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|385776982|ref|YP_005649550.1| - 0.0079 15.6 0.6 0.034 13.5 0.3 1.8 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|385776982|ref|YP_005649550.1| - 0.0083 16.2 0.8 0.11 12.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|385776982|ref|YP_005649550.1| - 0.0098 16.2 0.2 0.014 15.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|385776982|ref|YP_005649550.1| - 0.02 14.6 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|385776982|ref|YP_005649550.1| - 0.05 12.6 8.0 1 8.3 1.1 2.2 1 1 1 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|385776982|ref|YP_005649550.1| - 0.06 13.3 0.8 0.11 12.5 0.1 1.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|385776982|ref|YP_005649550.1| - 0.11 11.2 0.3 0.22 10.3 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain DUF258 PF03193.11 gi|385776982|ref|YP_005649550.1| - 0.11 11.6 0.1 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|385776982|ref|YP_005649550.1| - 0.12 12.0 0.1 0.25 10.9 0.1 1.6 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|385776982|ref|YP_005649550.1| - 0.17 11.3 0.1 0.32 10.4 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|385776982|ref|YP_005649550.1| - 0.21 11.3 1.9 0.28 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|385776982|ref|YP_005649550.1| - 0.35 11.1 2.2 0.39 11.0 0.7 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|385776983|ref|YP_005649551.1| - 2.3e-33 115.4 0.0 4e-33 114.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385776983|ref|YP_005649551.1| - 5.5e-16 58.6 0.0 1.1e-15 57.6 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385776983|ref|YP_005649551.1| - 1.3e-11 45.0 5.8 6.8e-10 39.3 0.8 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385776983|ref|YP_005649551.1| - 0.00013 21.2 0.6 0.0098 15.1 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|385776983|ref|YP_005649551.1| - 0.00053 20.1 3.2 0.0067 16.5 2.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385776983|ref|YP_005649551.1| - 0.003 17.0 0.3 0.0057 16.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385776983|ref|YP_005649551.1| - 0.0059 16.6 0.1 0.0094 15.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|385776983|ref|YP_005649551.1| - 0.0097 15.4 0.1 0.018 14.5 0.1 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family ResIII PF04851.10 gi|385776983|ref|YP_005649551.1| - 0.021 14.6 0.1 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|385776983|ref|YP_005649551.1| - 0.029 13.8 0.0 0.032 13.7 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|385776983|ref|YP_005649551.1| - 0.033 13.0 0.0 0.045 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|385776983|ref|YP_005649551.1| - 0.033 14.0 0.0 0.23 11.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|385776983|ref|YP_005649551.1| - 0.037 12.4 1.0 0.13 10.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|385776983|ref|YP_005649551.1| - 0.047 12.8 0.1 0.1 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|385776983|ref|YP_005649551.1| - 0.049 13.0 0.1 0.12 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain KH_2 PF07650.12 gi|385776983|ref|YP_005649551.1| - 0.08 12.5 2.5 0.24 10.9 1.8 1.9 1 0 0 1 1 1 0 KH domain AAA PF00004.24 gi|385776983|ref|YP_005649551.1| - 0.081 13.1 0.1 0.58 10.3 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|385776983|ref|YP_005649551.1| - 0.086 13.1 0.1 0.28 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain GvpD PF07088.6 gi|385776983|ref|YP_005649551.1| - 0.087 11.1 0.0 0.13 10.5 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|385776983|ref|YP_005649551.1| - 0.1 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|385776983|ref|YP_005649551.1| - 0.12 12.0 0.2 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.1 gi|385776983|ref|YP_005649551.1| - 0.13 11.2 10.0 0.082 11.9 0.7 2.5 3 0 0 3 3 3 0 AAA ATPase domain MFS_1 PF07690.11 gi|385776984|ref|YP_005649552.1| - 5.3e-10 38.5 42.1 4.9e-06 25.5 7.8 3.1 1 1 2 3 3 3 2 Major Facilitator Superfamily dUTPase PF00692.14 gi|385776985|ref|YP_005649553.1| - 2.7e-06 26.8 0.0 5.3e-06 25.9 0.0 1.5 2 0 0 2 2 2 1 dUTPase Radical_SAM PF04055.16 gi|385776988|ref|YP_005649556.1| - 2.6e-11 44.0 0.4 6.7e-11 42.6 0.2 1.6 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|385776988|ref|YP_005649556.1| - 4.8e-08 33.2 0.1 9.3e-08 32.2 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|385776988|ref|YP_005649556.1| - 5.1e-07 29.7 0.0 1.1e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glyco_hydro_97 PF10566.4 gi|385776988|ref|YP_005649556.1| - 0.036 13.1 0.1 0.22 10.5 0.0 2.0 2 0 0 2 2 2 0 Glycoside hydrolase 97 SPASM PF13186.1 gi|385776988|ref|YP_005649556.1| - 0.056 13.7 0.0 0.19 12.1 0.0 1.9 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain DKNYY PF13644.1 gi|385776989|ref|YP_005649557.1| - 1.2 9.4 15.7 2.5 8.3 10.8 1.4 1 1 0 1 1 1 0 DKNYY family PIN PF01850.16 gi|385776991|ref|YP_005649559.1| - 6.4e-10 39.4 0.1 7.4e-10 39.2 0.1 1.0 1 0 0 1 1 1 1 PIN domain UPF0278 PF08745.6 gi|385776991|ref|YP_005649559.1| - 0.00042 19.6 0.1 0.00064 19.0 0.1 1.3 1 1 0 1 1 1 1 UPF0278 family DUF366 PF04017.7 gi|385776991|ref|YP_005649559.1| - 0.027 13.7 0.1 0.033 13.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF366) DUF3680 PF12441.3 gi|385776991|ref|YP_005649559.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3680) Antitoxin-MazE PF04014.13 gi|385776992|ref|YP_005649560.1| - 4.5e-11 42.2 4.4 6.7e-11 41.6 3.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-1a PF01176.14 gi|385776992|ref|YP_005649560.1| - 0.056 12.8 1.5 0.083 12.3 1.0 1.5 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF104 PF01954.11 gi|385776992|ref|YP_005649560.1| - 0.12 12.3 3.7 0.071 13.1 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF104 Resolvase PF00239.16 gi|385776993|ref|YP_005649561.1| - 2.3e-16 59.9 0.1 3.5e-16 59.3 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|385776993|ref|YP_005649561.1| - 3.8e-12 46.2 0.1 7.6e-12 45.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|385776993|ref|YP_005649561.1| - 1.4e-10 40.8 0.2 1.4e-10 40.8 0.1 1.9 3 0 0 3 3 3 1 MerR HTH family regulatory protein MerR PF00376.18 gi|385776993|ref|YP_005649561.1| - 1.1e-06 28.0 0.0 2.2e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein MerR_2 PF13591.1 gi|385776993|ref|YP_005649561.1| - 0.00012 21.5 1.2 0.00062 19.3 0.0 2.5 3 0 0 3 3 3 1 MerR HTH family regulatory protein HTH_23 PF13384.1 gi|385776993|ref|YP_005649561.1| - 0.014 15.0 0.0 0.05 13.2 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain FtsH_ext PF06480.10 gi|385776993|ref|YP_005649561.1| - 0.033 14.3 0.3 0.28 11.3 0.2 2.2 1 1 0 1 1 1 0 FtsH Extracellular HTH_26 PF13443.1 gi|385776993|ref|YP_005649561.1| - 0.048 13.8 0.0 4.6 7.5 0.0 2.5 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Phage_AlpA PF05930.7 gi|385776993|ref|YP_005649561.1| - 0.11 12.2 0.7 0.24 11.1 0.1 2.0 2 1 0 2 2 2 0 Prophage CP4-57 regulatory protein (AlpA) HTH_28 PF13518.1 gi|385776993|ref|YP_005649561.1| - 0.12 12.3 0.0 0.41 10.6 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain DNA_photolyase PF00875.13 gi|385776993|ref|YP_005649561.1| - 0.14 11.8 0.2 2.8 7.6 0.2 2.2 1 1 0 1 1 1 0 DNA photolyase gpW PF02831.10 gi|385776993|ref|YP_005649561.1| - 0.15 11.6 0.8 0.37 10.3 0.3 1.8 1 1 1 2 2 2 0 gpW DUF3782 PF12644.2 gi|385776994|ref|YP_005649562.1| - 1.2e-33 114.6 13.3 1.1e-25 89.1 0.4 3.5 1 1 2 3 3 3 3 Protein of unknown function (DUF3782) DUF1626 PF07788.6 gi|385776994|ref|YP_005649562.1| - 1.4e-32 111.3 1.6 1.4e-32 111.3 1.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1626) DUF2730 PF10805.3 gi|385776994|ref|YP_005649562.1| - 0.0097 15.6 7.3 0.48 10.1 1.2 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF2730) Acetyltransf_4 PF13420.1 gi|385776994|ref|YP_005649562.1| - 0.017 15.0 0.5 0.041 13.8 0.4 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Atg14 PF10186.4 gi|385776994|ref|YP_005649562.1| - 0.22 10.4 6.9 0.33 9.8 4.3 1.6 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2674 PF10879.3 gi|385776994|ref|YP_005649562.1| - 0.31 10.7 3.9 2.5 7.9 0.7 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2674) DUF3349 PF11829.3 gi|385776994|ref|YP_005649562.1| - 0.36 11.2 5.4 0.41 11.1 0.8 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3349) DUF1664 PF07889.7 gi|385776994|ref|YP_005649562.1| - 0.64 9.8 7.7 3.4 7.4 3.7 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Rnk_N PF14760.1 gi|385776994|ref|YP_005649562.1| - 1.5 8.9 4.5 11 6.2 0.0 3.2 3 1 1 4 4 4 0 Rnk N-terminus ADIP PF11559.3 gi|385776994|ref|YP_005649562.1| - 1.5 8.7 10.1 5.8 6.8 6.4 2.0 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding SF3a60_bindingd PF12108.3 gi|385776994|ref|YP_005649562.1| - 4 7.0 6.7 0.53 9.8 1.2 2.2 2 0 0 2 2 2 0 Splicing factor SF3a60 binding domain Ald_Xan_dh_C2 PF02738.13 gi|385776996|ref|YP_005649564.1| - 2.3e-102 343.1 0.0 1.6e-79 267.6 0.0 2.1 1 1 1 2 2 2 2 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385776996|ref|YP_005649564.1| - 5.8e-13 48.9 0.0 1.6e-12 47.4 0.0 1.8 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAA_hydrolase PF01557.13 gi|385776997|ref|YP_005649565.1| - 2.7e-37 128.3 0.0 3.3e-37 128.0 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Rieske PF00355.21 gi|385776998|ref|YP_005649566.1| - 0.0014 18.1 0.0 0.0014 18.1 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Hydantoinase_A PF01968.13 gi|385776999|ref|YP_005649567.1| - 2.5e-88 295.9 0.2 2.1e-86 289.6 0.0 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|385776999|ref|YP_005649567.1| - 4.7e-50 169.5 0.2 9.3e-50 168.5 0.1 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region EutA PF06277.6 gi|385776999|ref|YP_005649567.1| - 0.015 13.8 1.0 0.024 13.2 0.1 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA Hydantoinase_B PF02538.9 gi|385777000|ref|YP_005649568.1| - 2.8e-165 550.5 5.5 3.3e-165 550.2 3.8 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase TrkA_C PF02080.16 gi|385777000|ref|YP_005649568.1| - 0.074 12.6 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 TrkA-C domain ATG22 PF11700.3 gi|385777000|ref|YP_005649568.1| - 0.16 10.3 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like SLAC1 PF03595.12 gi|385777001|ref|YP_005649569.1| - 5.2e-10 38.4 50.4 2.4e-08 33.0 35.0 2.2 1 1 0 1 1 1 1 Voltage-dependent anion channel TauE PF01925.14 gi|385777003|ref|YP_005649571.1| - 8.2e-21 74.5 10.3 8.2e-21 74.5 7.1 1.4 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE PARP_reg PF02877.9 gi|385777004|ref|YP_005649572.1| - 0.038 13.6 0.4 0.047 13.3 0.3 1.1 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain RNA_pol_L PF01193.19 gi|385777004|ref|YP_005649572.1| - 0.058 12.5 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain ATP-sulfurylase PF01747.12 gi|385777005|ref|YP_005649573.1| - 1.4e-79 266.3 0.0 1.8e-79 266.0 0.0 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|385777005|ref|YP_005649573.1| - 1.3e-40 138.4 0.0 2.2e-40 137.6 0.0 1.4 1 0 0 1 1 1 1 PUA-like domain TF_Zn_Ribbon PF08271.7 gi|385777005|ref|YP_005649573.1| - 0.00095 18.4 1.2 0.0019 17.4 0.4 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding PAPS_reduct PF01507.14 gi|385777006|ref|YP_005649574.1| - 1.3e-48 165.1 0.0 1.5e-48 164.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Pyrophosphatase PF00719.14 gi|385777006|ref|YP_005649574.1| - 0.00041 19.8 0.1 0.00067 19.1 0.0 1.3 1 0 0 1 1 1 1 Inorganic pyrophosphatase NIR_SIR PF01077.17 gi|385777007|ref|YP_005649575.1| - 4.8e-41 139.7 0.0 1.7e-37 128.2 0.0 2.6 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|385777007|ref|YP_005649575.1| - 3.5e-21 74.6 0.1 3.8e-09 36.0 0.0 3.8 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain TP_methylase PF00590.15 gi|385777008|ref|YP_005649576.1| - 8.5e-41 139.9 0.0 1e-40 139.7 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Rhodanese PF00581.15 gi|385777009|ref|YP_005649577.1| - 5.1e-43 146.0 0.1 2.2e-21 76.3 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain Urm1 PF09138.6 gi|385777010|ref|YP_005649578.1| - 0.091 12.8 0.3 0.11 12.6 0.2 1.4 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) RSD-2 PF07547.8 gi|385777010|ref|YP_005649578.1| - 0.12 12.4 0.2 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 RSD-2 N-terminal domain Pyr_redox_2 PF07992.9 gi|385777011|ref|YP_005649579.1| - 8.5e-16 58.4 0.1 1.3e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385777011|ref|YP_005649579.1| - 5.2e-06 26.7 0.2 0.13 12.7 0.0 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385777011|ref|YP_005649579.1| - 2.2e-05 24.2 0.4 0.15 11.7 0.0 3.1 2 1 0 3 3 3 2 FAD-NAD(P)-binding DAO PF01266.19 gi|385777011|ref|YP_005649579.1| - 2.5e-05 23.3 0.3 0.78 8.5 0.0 3.1 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|385777011|ref|YP_005649579.1| - 0.00086 19.4 0.6 1.6 8.7 0.0 3.1 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|385777011|ref|YP_005649579.1| - 0.00089 18.2 0.4 0.091 11.6 0.1 2.4 2 1 1 3 3 3 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|385777011|ref|YP_005649579.1| - 0.0012 17.6 0.1 0.013 14.1 0.0 2.4 3 0 0 3 3 3 1 Tryptophan halogenase HI0933_like PF03486.9 gi|385777011|ref|YP_005649579.1| - 0.0018 16.8 0.1 4.1 5.7 0.0 3.0 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.17 gi|385777011|ref|YP_005649579.1| - 0.0066 15.3 2.1 0.033 13.0 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|385777011|ref|YP_005649579.1| - 0.017 15.3 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|385777011|ref|YP_005649579.1| - 0.018 15.0 0.1 0.041 13.8 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain FAD_binding_3 PF01494.14 gi|385777011|ref|YP_005649579.1| - 0.064 12.2 0.1 1.1 8.2 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain Rieske PF00355.21 gi|385777012|ref|YP_005649580.1| - 5.7e-13 48.2 0.0 6.5e-13 48.0 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|385777012|ref|YP_005649580.1| - 5.4e-11 42.1 0.0 6.4e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Lactamase_B PF00753.22 gi|385777013|ref|YP_005649581.1| - 4.2e-23 82.0 2.2 5.7e-23 81.5 1.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385777013|ref|YP_005649581.1| - 1.3e-07 31.3 0.0 1.8e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Asp_protease_2 PF13650.1 gi|385777013|ref|YP_005649581.1| - 0.024 15.1 0.0 0.1 13.0 0.0 2.0 2 0 0 2 2 2 0 Aspartyl protease zf-ribbon_3 PF13248.1 gi|385777014|ref|YP_005649582.1| - 0.00026 20.0 2.7 0.00042 19.4 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|385777014|ref|YP_005649582.1| - 0.0034 17.1 0.8 0.0053 16.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385777014|ref|YP_005649582.1| - 0.012 15.0 3.1 0.019 14.4 2.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain RecR PF02132.10 gi|385777014|ref|YP_005649582.1| - 0.69 9.3 2.3 1.1 8.7 1.6 1.2 1 0 0 1 1 1 0 RecR protein zf-C4_ClpX PF06689.8 gi|385777014|ref|YP_005649582.1| - 0.92 9.0 8.5 2 7.9 0.8 2.3 1 1 1 2 2 2 0 ClpX C4-type zinc finger TF_Zn_Ribbon PF08271.7 gi|385777014|ref|YP_005649582.1| - 1.5 8.2 5.4 0.78 9.1 0.4 2.1 1 1 2 3 3 3 0 TFIIB zinc-binding Aldo_ket_red PF00248.16 gi|385777015|ref|YP_005649583.1| - 2e-69 233.5 0.0 2.3e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family CMD PF02627.15 gi|385777016|ref|YP_005649584.1| - 2.6e-20 72.0 0.0 3.4e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF973 PF06157.6 gi|385777019|ref|YP_005649587.1| - 0.012 14.5 0.1 0.012 14.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) XdhC_C PF13478.1 gi|385777020|ref|YP_005649588.1| - 4.7e-23 82.0 0.0 6.2e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain ADH_N PF08240.7 gi|385777021|ref|YP_005649589.1| - 1.5e-24 85.8 0.3 2.4e-23 81.9 0.2 2.2 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385777021|ref|YP_005649589.1| - 1.3e-14 53.8 0.0 1.1e-13 50.8 0.0 2.1 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385777021|ref|YP_005649589.1| - 3.7e-12 47.2 0.0 6.2e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|385777021|ref|YP_005649589.1| - 0.065 13.2 0.0 0.18 11.7 0.0 1.7 1 1 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|385777021|ref|YP_005649589.1| - 0.11 11.9 0.1 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Acyl-CoA_dh_1 PF00441.19 gi|385777022|ref|YP_005649590.1| - 7.2e-42 143.0 4.4 1.2e-41 142.3 3.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|385777022|ref|YP_005649590.1| - 5.2e-32 110.7 0.1 1.6e-31 109.2 0.1 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|385777022|ref|YP_005649590.1| - 1.6e-20 73.6 2.8 3e-20 72.8 1.9 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|385777022|ref|YP_005649590.1| - 3.1e-20 71.4 0.1 6.4e-20 70.4 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|385777022|ref|YP_005649590.1| - 0.0023 17.3 0.0 0.0079 15.6 0.0 1.9 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.23 gi|385777023|ref|YP_005649591.1| - 1.6e-84 283.7 0.0 1.9e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385777023|ref|YP_005649591.1| - 6.9e-15 55.7 0.0 1.3e-14 54.8 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thiolase_N PF00108.18 gi|385777024|ref|YP_005649592.1| - 4e-15 55.5 0.3 3.4e-12 45.9 0.2 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|385777024|ref|YP_005649592.1| - 1.4e-07 30.9 0.2 1.3e-06 27.8 0.0 2.4 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|385777024|ref|YP_005649592.1| - 2.4e-06 27.2 7.3 8.9e-06 25.3 0.6 2.8 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|385777024|ref|YP_005649592.1| - 3e-05 23.5 0.2 0.0023 17.5 0.0 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SpoVAD PF07451.6 gi|385777024|ref|YP_005649592.1| - 0.04 12.3 0.0 0.086 11.2 0.0 1.5 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) DUF35_N PF12172.3 gi|385777025|ref|YP_005649593.1| - 1.2e-11 44.1 0.1 2e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|385777025|ref|YP_005649593.1| - 1.7e-09 37.7 0.4 2.3e-09 37.3 0.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain TrpBP PF02081.10 gi|385777025|ref|YP_005649593.1| - 0.02 14.2 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein Auto_anti-p27 PF06677.7 gi|385777025|ref|YP_005649593.1| - 0.036 13.8 5.0 0.37 10.5 3.2 2.5 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.1 gi|385777025|ref|YP_005649593.1| - 0.056 12.6 0.2 11 5.3 0.0 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger DZR PF12773.2 gi|385777025|ref|YP_005649593.1| - 0.073 12.8 0.6 0.12 12.2 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon NMD3 PF04981.8 gi|385777025|ref|YP_005649593.1| - 0.13 11.3 0.3 0.28 10.2 0.2 1.5 1 0 0 1 1 1 0 NMD3 family PhnA_Zn_Ribbon PF08274.7 gi|385777025|ref|YP_005649593.1| - 0.16 11.7 2.4 0.88 9.4 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|385777025|ref|YP_005649593.1| - 0.29 10.6 4.3 5.5 6.5 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|385777025|ref|YP_005649593.1| - 0.36 10.1 2.1 5.8 6.3 0.3 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding DUF4546 PF15079.1 gi|385777025|ref|YP_005649593.1| - 0.83 8.7 3.6 0.16 11.1 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4546) zinc_ribbon_2 PF13240.1 gi|385777025|ref|YP_005649593.1| - 0.93 9.0 5.1 2 7.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain 3HCDH_N PF02737.13 gi|385777026|ref|YP_005649594.1| - 2.6e-63 212.9 0.1 3.6e-63 212.4 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|385777026|ref|YP_005649594.1| - 2.6e-38 130.3 0.1 4.3e-29 100.7 0.1 2.7 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|385777026|ref|YP_005649594.1| - 0.00032 20.5 0.1 0.0018 18.1 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Acetyltransf_1 PF00583.19 gi|385777027|ref|YP_005649595.1| - 1.4e-17 63.5 0.0 1.8e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|385777027|ref|YP_005649595.1| - 1.7e-15 56.9 0.1 2.4e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385777027|ref|YP_005649595.1| - 1.8e-15 57.2 0.0 2.2e-15 56.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|385777027|ref|YP_005649595.1| - 2.1e-13 50.4 0.0 2.5e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385777027|ref|YP_005649595.1| - 4.1e-11 42.8 0.0 6.5e-11 42.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|385777027|ref|YP_005649595.1| - 3.4e-09 36.9 0.0 4.2e-09 36.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385777027|ref|YP_005649595.1| - 2.7e-07 30.2 0.0 4.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|385777027|ref|YP_005649595.1| - 1.2e-06 28.4 0.0 1.7e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Mec-17 PF05301.6 gi|385777027|ref|YP_005649595.1| - 6.5e-05 22.8 0.0 0.00018 21.4 0.0 1.8 2 0 0 2 2 2 1 Touch receptor neuron protein Mec-17 Acetyltransf_6 PF13480.1 gi|385777027|ref|YP_005649595.1| - 0.0016 18.3 0.0 0.003 17.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|385777027|ref|YP_005649595.1| - 0.0025 17.6 0.0 0.0045 16.8 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|385777027|ref|YP_005649595.1| - 0.023 14.2 0.0 0.037 13.6 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PP_kinase_C PF13090.1 gi|385777027|ref|YP_005649595.1| - 0.096 11.2 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain Acetyltransf_13 PF13880.1 gi|385777027|ref|YP_005649595.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Malic_M PF03949.10 gi|385777028|ref|YP_005649596.1| - 2.7e-68 230.2 0.5 3.4e-68 229.9 0.3 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|385777028|ref|YP_005649596.1| - 2.2e-27 95.7 0.5 1.4e-19 70.3 0.1 2.5 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Ldr_toxin PF13940.1 gi|385777028|ref|YP_005649596.1| - 0.052 13.3 0.3 0.11 12.2 0.2 1.5 1 0 0 1 1 1 0 Toxin Ldr, type I toxin-antitoxin system Thi4 PF01946.12 gi|385777028|ref|YP_005649596.1| - 0.082 11.9 0.1 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 Thi4 family EamA PF00892.15 gi|385777029|ref|YP_005649597.1| - 8.1e-34 116.3 31.4 1.7e-19 70.0 6.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|385777029|ref|YP_005649597.1| - 0.0017 18.5 24.5 0.004 17.3 5.0 3.0 1 1 0 2 2 2 2 Multidrug resistance efflux transporter DrsE PF02635.10 gi|385777030|ref|YP_005649598.1| - 4.3e-11 42.9 0.1 4.9e-11 42.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family COX15-CtaA PF02628.10 gi|385777031|ref|YP_005649599.1| - 3.9e-05 22.6 11.9 0.00033 19.6 2.3 2.0 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein DUF981 PF06168.6 gi|385777031|ref|YP_005649599.1| - 0.0011 18.7 8.6 0.0012 18.6 6.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Polysacc_synt_3 PF13440.1 gi|385777031|ref|YP_005649599.1| - 0.091 12.2 12.0 0.12 11.8 8.3 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein MtrC PF04211.8 gi|385777031|ref|YP_005649599.1| - 0.098 11.6 3.6 0.049 12.6 0.8 1.7 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C YfzA PF14118.1 gi|385777031|ref|YP_005649599.1| - 1.1 9.4 4.0 0.26 11.4 0.5 1.8 2 0 0 2 2 2 0 YfzA-like protein DUF4131 PF13567.1 gi|385777031|ref|YP_005649599.1| - 2.2 7.6 5.8 2.6 7.4 3.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) MIase PF02426.11 gi|385777032|ref|YP_005649600.1| - 1.6e-10 40.6 0.0 1.8e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Muconolactone delta-isomerase AsnC_trans_reg PF01037.16 gi|385777032|ref|YP_005649600.1| - 0.025 14.3 0.1 0.044 13.5 0.0 1.4 1 1 0 1 1 1 0 AsnC family Unstab_antitox PF09720.5 gi|385777032|ref|YP_005649600.1| - 0.027 14.1 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative addiction module component HisG_C PF08029.6 gi|385777032|ref|YP_005649600.1| - 0.032 14.1 0.1 2.7 7.9 0.0 2.1 1 1 1 2 2 2 0 HisG, C-terminal domain GYD PF08734.6 gi|385777032|ref|YP_005649600.1| - 0.039 13.6 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 GYD domain Grp1_Fun34_YaaH PF01184.14 gi|385777033|ref|YP_005649601.1| - 1.3e-48 165.1 29.2 2.5e-48 164.1 20.3 1.4 1 1 0 1 1 1 1 GPR1/FUN34/yaaH family AMP-binding PF00501.23 gi|385777034|ref|YP_005649602.1| - 4.9e-90 301.8 0.0 6e-90 301.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385777034|ref|YP_005649602.1| - 7.8e-22 78.0 0.3 2.4e-21 76.4 0.1 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain 4HBT PF03061.17 gi|385777035|ref|YP_005649603.1| - 4.3e-13 49.2 0.0 5.3e-13 48.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|385777035|ref|YP_005649603.1| - 0.002 17.9 0.0 0.0024 17.6 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily SBP56 PF05694.6 gi|385777036|ref|YP_005649604.1| - 3.3e-209 695.1 0.0 3.7e-209 694.9 0.0 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.4 gi|385777036|ref|YP_005649604.1| - 0.023 13.7 0.0 0.31 10.0 0.0 2.2 1 1 1 2 2 2 0 Lactonase, 7-bladed beta-propeller DUF1264 PF06884.6 gi|385777036|ref|YP_005649604.1| - 0.056 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1264) AGT PF11440.3 gi|385777038|ref|YP_005649606.1| - 0.072 11.9 0.1 0.072 11.9 0.1 1.0 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase MFS_1 PF07690.11 gi|385777039|ref|YP_005649607.1| - 4.5e-30 104.5 43.8 4.5e-30 104.5 30.4 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|385777039|ref|YP_005649607.1| - 3.2e-08 32.1 4.5 3.2e-08 32.1 3.1 2.1 2 0 0 2 2 2 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|385777039|ref|YP_005649607.1| - 0.011 15.5 1.3 0.011 15.5 0.9 3.5 3 1 1 4 4 4 0 MFS_1 like family MFS_1 PF07690.11 gi|385777040|ref|YP_005649608.1| - 2.9e-25 88.7 57.0 3.1e-22 78.7 16.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385777040|ref|YP_005649608.1| - 1.5e-21 76.4 40.2 3.7e-18 65.3 27.8 2.1 1 1 0 1 1 1 1 Sugar (and other) transporter ABC_tran PF00005.22 gi|385777041|ref|YP_005649609.1| - 7.6e-33 113.7 0.0 1.5e-32 112.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385777041|ref|YP_005649609.1| - 1.9e-11 44.4 3.2 4.5e-07 30.1 0.0 2.8 2 1 1 3 3 3 2 AAA domain TOBE_2 PF08402.5 gi|385777041|ref|YP_005649609.1| - 4.1e-05 23.4 0.0 0.00012 21.9 0.0 1.9 2 0 0 2 2 2 1 TOBE domain SbcCD_C PF13558.1 gi|385777041|ref|YP_005649609.1| - 0.00087 19.1 0.3 0.0034 17.2 0.2 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|385777041|ref|YP_005649609.1| - 0.002 17.2 0.0 0.17 10.9 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|385777041|ref|YP_005649609.1| - 0.0032 16.7 0.6 0.048 12.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|385777041|ref|YP_005649609.1| - 0.0035 18.1 0.0 0.01 16.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385777041|ref|YP_005649609.1| - 0.0092 15.8 0.1 1.1 9.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385777041|ref|YP_005649609.1| - 0.012 15.1 0.0 0.23 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|385777041|ref|YP_005649609.1| - 0.041 14.1 1.6 0.1 12.8 1.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|385777041|ref|YP_005649609.1| - 0.043 13.3 0.0 0.093 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.12 gi|385777041|ref|YP_005649609.1| - 0.05 13.4 0.1 0.12 12.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|385777041|ref|YP_005649609.1| - 0.14 11.3 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 BPD_transp_1 PF00528.17 gi|385777042|ref|YP_005649610.1| - 1.7e-15 57.0 25.0 1.7e-15 57.0 17.3 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_2 PF02653.11 gi|385777044|ref|YP_005649612.1| - 3.8e-22 78.5 23.0 5.2e-22 78.0 15.9 1.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component PgaD PF13994.1 gi|385777044|ref|YP_005649612.1| - 0.26 10.7 0.1 0.26 10.7 0.0 2.4 2 1 0 2 2 2 0 PgaD-like protein BPD_transp_2 PF02653.11 gi|385777045|ref|YP_005649613.1| - 2.1e-40 138.4 36.4 2.4e-40 138.1 25.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|385777045|ref|YP_005649613.1| - 0.1 12.1 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 PaREP1 PF05942.6 gi|385777046|ref|YP_005649614.1| - 7.6e-20 70.8 0.0 1e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Creatininase PF02633.9 gi|385777048|ref|YP_005649616.1| - 2.9e-55 186.9 0.0 3.4e-55 186.7 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF4322 PF14210.1 gi|385777049|ref|YP_005649617.1| - 3.6e-25 87.1 0.1 9.1e-25 85.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4322) PepSY_2 PF13670.1 gi|385777049|ref|YP_005649617.1| - 0.0028 17.5 0.0 2.1 8.3 0.0 2.3 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DDE_5 PF13546.1 gi|385777049|ref|YP_005649617.1| - 0.0033 16.3 0.0 0.0065 15.3 0.0 1.4 2 0 0 2 2 2 1 DDE superfamily endonuclease Arginase PF00491.16 gi|385777050|ref|YP_005649618.1| - 5.8e-77 258.7 0.0 6.9e-77 258.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF2396 PF09654.5 gi|385777050|ref|YP_005649618.1| - 0.052 13.5 0.3 0.08 12.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) UDG PF03167.14 gi|385777051|ref|YP_005649619.1| - 4.6e-30 104.1 0.0 5.6e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Pro_CA PF00484.14 gi|385777054|ref|YP_005649622.1| - 7.9e-14 51.9 0.0 4.4e-12 46.2 0.0 2.1 2 0 0 2 2 2 2 Carbonic anhydrase Takusan PF04822.8 gi|385777054|ref|YP_005649622.1| - 0.025 14.3 0.2 9.3 6.0 0.0 2.4 2 0 0 2 2 2 0 Takusan DUF433 PF04255.9 gi|385777055|ref|YP_005649623.1| - 3.9e-15 54.9 0.0 5e-11 41.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF433) Tox-REase-3 PF15647.1 gi|385777055|ref|YP_005649623.1| - 0.21 11.4 2.5 0.63 9.8 0.3 2.2 1 1 0 2 2 2 0 Restriction endonuclease fold toxin 3 Peptidase_M20 PF01546.23 gi|385777056|ref|YP_005649624.1| - 5.5e-33 114.0 0.0 7.2e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385777056|ref|YP_005649624.1| - 4e-17 61.9 0.0 2.1e-16 59.6 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain HpaB_N PF11794.3 gi|385777057|ref|YP_005649625.1| - 4e-88 295.2 0.5 4e-88 295.2 0.3 1.5 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|385777057|ref|YP_005649625.1| - 6.1e-63 211.3 0.0 9.2e-63 210.7 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal CBS PF00571.23 gi|385777058|ref|YP_005649626.1| - 4.4e-58 192.8 9.7 7.5e-16 57.6 0.0 4.0 4 0 0 4 4 4 4 CBS domain DisA_N PF02457.11 gi|385777058|ref|YP_005649626.1| - 0.026 13.6 0.2 3.9 6.6 0.0 2.8 2 1 0 2 2 2 0 DisA bacterial checkpoint controller nucleotide-binding Ribosomal_L9_C PF03948.9 gi|385777058|ref|YP_005649626.1| - 0.029 14.4 0.1 1.3 9.1 0.0 3.0 3 0 0 3 3 3 0 Ribosomal protein L9, C-terminal domain Glyco_hydro_15 PF00723.16 gi|385777060|ref|YP_005649628.1| - 2.4e-59 201.0 0.0 3.7e-57 193.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|385777060|ref|YP_005649628.1| - 2.3e-05 23.3 0.7 2.3e-05 23.3 0.5 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF608 TPR_8 PF13181.1 gi|385777060|ref|YP_005649628.1| - 0.0037 16.9 0.1 0.061 13.1 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385777060|ref|YP_005649628.1| - 0.22 12.2 0.0 4.2 8.2 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF650 PF04894.7 gi|385777061|ref|YP_005649629.1| - 5.6e-98 327.7 0.0 7.7e-98 327.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|385777061|ref|YP_005649629.1| - 1.7e-38 130.5 0.0 3e-38 129.8 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Radical_SAM PF04055.16 gi|385777062|ref|YP_005649630.1| - 3.4e-13 50.1 0.0 4.5e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|385777062|ref|YP_005649630.1| - 0.07 12.6 4.1 0.54 9.7 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) Fer4_14 PF13394.1 gi|385777062|ref|YP_005649630.1| - 0.094 12.7 0.1 0.45 10.5 0.0 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF2173 PF09941.4 gi|385777063|ref|YP_005649631.1| - 3.7e-43 145.8 0.5 4.1e-43 145.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) FlgM PF04316.8 gi|385777063|ref|YP_005649631.1| - 0.0014 18.4 0.1 0.0049 16.7 0.0 1.8 2 0 0 2 2 2 1 Anti-sigma-28 factor, FlgM MFS_1 PF07690.11 gi|385777064|ref|YP_005649632.1| - 7.8e-20 70.8 44.7 7e-11 41.4 19.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily TM_helix PF05552.7 gi|385777064|ref|YP_005649632.1| - 0.062 12.9 0.5 0.062 12.9 0.3 3.0 3 0 0 3 3 3 0 Conserved TM helix MFS_3 PF05977.8 gi|385777064|ref|YP_005649632.1| - 0.31 9.0 10.4 0.52 8.3 2.5 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector Aldose_epim PF01263.15 gi|385777065|ref|YP_005649633.1| - 1.5e-34 119.5 0.0 2.8e-34 118.6 0.0 1.4 1 1 0 1 1 1 1 Aldose 1-epimerase Linocin_M18 PF04454.7 gi|385777067|ref|YP_005649635.1| - 6.8e-50 169.3 0.2 1.1e-49 168.7 0.1 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|385777067|ref|YP_005649635.1| - 8e-05 22.9 0.1 0.00017 21.9 0.1 1.5 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|385777067|ref|YP_005649635.1| - 0.013 15.2 0.1 0.023 14.4 0.1 1.4 1 0 0 1 1 1 0 Ferritin-like domain AAA_22 PF13401.1 gi|385777068|ref|YP_005649636.1| - 3.6e-05 23.9 0.1 0.00073 19.6 0.1 2.6 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|385777068|ref|YP_005649636.1| - 5.2e-05 23.5 0.0 0.0002 21.6 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_14 PF13173.1 gi|385777068|ref|YP_005649636.1| - 0.00027 20.8 1.3 0.0056 16.5 0.1 3.0 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385777068|ref|YP_005649636.1| - 0.00074 20.3 1.1 0.011 16.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|385777068|ref|YP_005649636.1| - 0.00095 18.9 0.6 0.016 14.9 0.1 2.8 4 0 0 4 4 3 1 NTPase NB-ARC PF00931.17 gi|385777068|ref|YP_005649636.1| - 0.0011 17.9 0.2 0.0021 16.9 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|385777068|ref|YP_005649636.1| - 0.0012 18.8 0.0 0.0037 17.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|385777068|ref|YP_005649636.1| - 0.0013 18.8 0.4 0.0064 16.6 0.0 2.3 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|385777068|ref|YP_005649636.1| - 0.0032 17.1 0.0 0.0089 15.6 0.0 1.7 2 0 0 2 2 1 1 NACHT domain AAA_18 PF13238.1 gi|385777068|ref|YP_005649636.1| - 0.0049 17.1 0.5 0.0049 17.1 0.3 2.7 2 1 1 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|385777068|ref|YP_005649636.1| - 0.0064 15.6 0.0 0.022 13.8 0.0 2.0 1 0 0 1 1 1 1 Zeta toxin ATP_bind_1 PF03029.12 gi|385777068|ref|YP_005649636.1| - 0.0086 15.6 0.1 0.034 13.6 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Img2 PF05046.9 gi|385777068|ref|YP_005649636.1| - 0.01 16.0 0.2 0.33 11.1 0.0 3.1 3 0 0 3 3 3 0 Mitochondrial large subunit ribosomal protein (Img2) AAA_10 PF12846.2 gi|385777068|ref|YP_005649636.1| - 0.01 15.2 0.0 0.024 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_25 PF13481.1 gi|385777068|ref|YP_005649636.1| - 0.013 14.9 0.0 0.049 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|385777068|ref|YP_005649636.1| - 0.016 14.4 0.1 0.031 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|385777068|ref|YP_005649636.1| - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385777068|ref|YP_005649636.1| - 0.021 14.5 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|385777068|ref|YP_005649636.1| - 0.025 14.3 0.0 0.068 12.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|385777068|ref|YP_005649636.1| - 0.031 13.9 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|385777068|ref|YP_005649636.1| - 0.035 13.6 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385777068|ref|YP_005649636.1| - 0.053 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MCM PF00493.18 gi|385777068|ref|YP_005649636.1| - 0.053 12.3 0.3 0.18 10.5 0.0 1.9 2 1 1 3 3 3 0 MCM2/3/5 family Miro PF08477.8 gi|385777068|ref|YP_005649636.1| - 0.08 13.4 0.0 0.27 11.7 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein SRP54 PF00448.17 gi|385777068|ref|YP_005649636.1| - 0.13 11.7 0.2 0.43 10.0 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PTS_IIB PF02302.12 gi|385777068|ref|YP_005649636.1| - 0.13 12.7 0.4 30 5.1 0.0 3.6 3 0 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit DUF4318 PF14201.1 gi|385777068|ref|YP_005649636.1| - 5.5 6.8 7.6 0.88 9.4 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4318) MA3 PF02847.12 gi|385777069|ref|YP_005649637.1| - 0.021 14.5 0.8 0.062 13.0 0.0 2.1 3 1 0 3 3 3 0 MA3 domain ESCRT-II PF05871.7 gi|385777069|ref|YP_005649637.1| - 0.042 13.7 0.3 0.057 13.3 0.2 1.2 1 0 0 1 1 1 0 ESCRT-II complex subunit DUF3895 PF13034.1 gi|385777069|ref|YP_005649637.1| - 0.067 12.6 0.1 3.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3895) PSD2 PF07624.6 gi|385777069|ref|YP_005649637.1| - 0.08 12.6 0.2 0.95 9.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1585) RSS_P20 PF11757.3 gi|385777069|ref|YP_005649637.1| - 0.11 12.5 0.6 0.2 11.7 0.1 1.6 1 1 1 2 2 2 0 Suppressor of RNA silencing P21-like TFIIE_beta PF02186.10 gi|385777069|ref|YP_005649637.1| - 0.15 12.0 0.8 0.36 10.8 0.6 1.6 1 0 0 1 1 1 0 TFIIE beta subunit core domain Cupin_5 PF06172.6 gi|385777071|ref|YP_005649639.1| - 0.075 12.9 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Cupin superfamily (DUF985) DUF1803 PF08820.5 gi|385777071|ref|YP_005649639.1| - 0.19 11.4 1.6 0.31 10.7 0.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) Glyco_hydro_15 PF00723.16 gi|385777072|ref|YP_005649640.1| - 4.9e-54 183.5 0.4 9.7e-51 172.7 0.7 2.0 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_19 PF14559.1 gi|385777072|ref|YP_005649640.1| - 0.12 12.7 0.4 3.3 8.1 0.0 3.0 4 0 0 4 4 4 0 Tetratricopeptide repeat Glycos_transf_1 PF00534.15 gi|385777073|ref|YP_005649641.1| - 1.6e-34 118.7 0.2 4.5e-34 117.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385777073|ref|YP_005649641.1| - 1.4e-14 54.3 0.0 3.3e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385777073|ref|YP_005649641.1| - 6.1e-07 29.6 0.0 2.2e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|385777073|ref|YP_005649641.1| - 0.0011 17.5 0.1 0.0081 14.6 0.1 2.2 2 1 0 2 2 2 1 Glycosyltransferase family 20 TPP_enzyme_C PF02775.16 gi|385777074|ref|YP_005649642.1| - 5.6e-23 81.2 0.5 7.3e-23 80.8 0.3 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.15 gi|385777074|ref|YP_005649642.1| - 0.0021 16.8 0.1 0.003 16.3 0.1 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|385777074|ref|YP_005649642.1| - 0.018 13.9 0.9 0.096 11.5 0.1 1.9 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|385777075|ref|YP_005649643.1| - 3e-69 233.0 0.0 3.8e-69 232.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|385777075|ref|YP_005649643.1| - 3.2e-08 33.5 0.0 7.7e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|385777075|ref|YP_005649643.1| - 0.00011 21.7 0.2 0.00019 20.9 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|385777076|ref|YP_005649644.1| - 1.7e-15 55.8 16.5 5.7e-09 35.2 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385777076|ref|YP_005649644.1| - 1.1e-13 50.6 20.8 2.9e-10 39.8 7.6 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385777076|ref|YP_005649644.1| - 5.4e-12 45.0 15.8 1.7e-06 27.6 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385777076|ref|YP_005649644.1| - 1.6e-11 43.8 9.2 2.4e-11 43.2 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777076|ref|YP_005649644.1| - 2.6e-10 39.5 14.4 1.3e-05 24.8 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385777076|ref|YP_005649644.1| - 4.8e-10 39.6 12.6 7.6e-10 39.0 8.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385777076|ref|YP_005649644.1| - 7.1e-09 36.2 6.7 8.7e-05 23.1 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|385777076|ref|YP_005649644.1| - 3.3e-08 33.6 13.4 4.7e-08 33.1 9.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385777076|ref|YP_005649644.1| - 4.8e-08 32.6 13.3 0.00038 20.5 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385777076|ref|YP_005649644.1| - 9.8e-07 29.1 7.3 0.0079 16.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385777076|ref|YP_005649644.1| - 4.4e-06 27.1 12.6 0.0029 18.1 0.7 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|385777076|ref|YP_005649644.1| - 9.2e-06 25.9 9.2 0.003 17.9 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|385777076|ref|YP_005649644.1| - 2e-05 24.8 5.8 0.032 14.5 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777076|ref|YP_005649644.1| - 0.00012 21.9 14.3 0.0036 17.2 10.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|385777076|ref|YP_005649644.1| - 0.068 13.0 7.1 0.1 12.4 4.9 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385777076|ref|YP_005649644.1| - 0.1 13.1 7.9 0.1 13.1 5.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|385777077|ref|YP_005649645.1| - 7.9e-37 126.8 0.0 9.8e-37 126.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_11 PF13247.1 gi|385777078|ref|YP_005649646.1| - 1.4e-24 85.8 13.8 3.2e-24 84.6 6.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385777078|ref|YP_005649646.1| - 2e-14 53.7 25.9 3.9e-09 36.7 4.5 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385777078|ref|YP_005649646.1| - 5.4e-13 47.9 39.0 1.3e-07 30.9 1.4 5.3 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385777078|ref|YP_005649646.1| - 7.9e-12 44.5 38.3 1.1e-06 28.1 1.3 4.7 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385777078|ref|YP_005649646.1| - 2.8e-10 40.3 27.2 1.1e-06 28.7 5.3 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385777078|ref|YP_005649646.1| - 1.3e-08 34.4 33.1 4.4e-05 23.2 6.7 3.5 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385777078|ref|YP_005649646.1| - 3.2e-07 30.0 25.0 0.00029 20.6 4.1 2.7 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777078|ref|YP_005649646.1| - 3.9e-07 29.6 36.2 4.1e-05 23.2 1.3 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|385777078|ref|YP_005649646.1| - 7.6e-07 29.2 41.8 0.0069 16.8 2.0 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385777078|ref|YP_005649646.1| - 4.8e-06 27.2 25.4 0.21 12.3 2.2 4.4 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|385777078|ref|YP_005649646.1| - 9e-06 25.6 35.1 0.0013 18.8 1.8 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain DmsC PF04976.7 gi|385777078|ref|YP_005649646.1| - 0.00035 19.9 11.5 0.00068 18.9 7.9 1.4 1 1 0 1 1 1 1 DMSO reductase anchor subunit (DmsC) Fer4_8 PF13183.1 gi|385777078|ref|YP_005649646.1| - 0.0012 18.8 28.4 0.16 11.9 8.1 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385777078|ref|YP_005649646.1| - 0.0057 16.9 24.1 2.3 8.6 0.4 4.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385777078|ref|YP_005649646.1| - 0.1 13.2 1.0 0.1 13.2 0.7 3.8 2 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|385777078|ref|YP_005649646.1| - 1.2 9.6 27.2 0.81 10.1 0.8 4.4 3 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385777078|ref|YP_005649646.1| - 3.3 8.1 27.4 2.6 8.4 6.0 3.7 2 2 0 2 2 2 0 4Fe-4S single cluster domain DrrA_P4M PF14860.1 gi|385777079|ref|YP_005649647.1| - 0.014 15.1 1.4 0.097 12.4 0.5 1.9 1 1 1 2 2 2 0 DrrA phosphatidylinositol 4-phosphate binding domain RepB-RCR_reg PF10723.4 gi|385777079|ref|YP_005649647.1| - 0.12 12.1 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Replication regulatory protein RepB Ald_Xan_dh_C2 PF02738.13 gi|385777080|ref|YP_005649648.1| - 1.3e-110 370.2 0.0 1.7e-110 369.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385777080|ref|YP_005649648.1| - 2.2e-12 47.0 0.0 4.3e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF167 PF02594.11 gi|385777080|ref|YP_005649648.1| - 0.11 12.4 1.1 2.9 7.8 0.1 3.2 3 0 0 3 3 3 0 Uncharacterised ACR, YggU family COG1872 Acyl-CoA_dh_1 PF00441.19 gi|385777081|ref|YP_005649649.1| - 1.5e-38 132.2 0.7 2.4e-38 131.5 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|385777081|ref|YP_005649649.1| - 3e-23 82.5 0.0 6.6e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|385777081|ref|YP_005649649.1| - 1e-20 72.9 0.1 2.5e-20 71.7 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|385777081|ref|YP_005649649.1| - 1.1e-17 64.4 0.1 2e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain ETF_alpha PF00766.14 gi|385777082|ref|YP_005649650.1| - 2.7e-31 106.9 1.3 6.4e-31 105.8 0.4 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|385777082|ref|YP_005649650.1| - 2.2e-14 53.4 1.0 3.6e-14 52.8 0.1 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|385777083|ref|YP_005649651.1| - 9.4e-29 100.2 0.0 1.2e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain B12-binding PF02310.14 gi|385777083|ref|YP_005649651.1| - 0.039 13.8 0.2 0.33 10.8 0.0 2.2 1 1 1 2 2 2 0 B12 binding domain Surf_Ag_VNR PF07244.10 gi|385777083|ref|YP_005649651.1| - 0.52 10.7 3.3 5.6 7.4 0.3 3.0 3 0 0 3 3 3 0 Surface antigen variable number repeat Fer4_10 PF13237.1 gi|385777084|ref|YP_005649652.1| - 7.7e-06 25.6 4.5 1.4e-05 24.8 3.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385777084|ref|YP_005649652.1| - 4.8e-05 23.5 6.6 4.8e-05 23.5 4.6 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385777084|ref|YP_005649652.1| - 0.00014 22.1 10.2 0.0023 18.2 6.9 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385777084|ref|YP_005649652.1| - 0.00015 21.2 12.0 0.00031 20.2 0.6 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385777084|ref|YP_005649652.1| - 0.0025 17.6 12.2 0.14 12.0 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|385777084|ref|YP_005649652.1| - 0.012 15.6 7.8 0.013 15.5 3.2 2.5 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|385777084|ref|YP_005649652.1| - 0.016 15.0 1.9 0.032 14.1 1.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain NADH_dh_m_C1 PF15088.1 gi|385777084|ref|YP_005649652.1| - 0.044 13.2 0.1 1.5 8.4 0.0 2.6 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial Fer4_18 PF13746.1 gi|385777084|ref|YP_005649652.1| - 0.072 13.5 8.0 0.31 11.4 0.1 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777084|ref|YP_005649652.1| - 0.087 12.7 14.6 0.099 12.6 0.2 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385777084|ref|YP_005649652.1| - 0.54 11.0 4.8 11 6.8 0.1 2.4 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain DUF4231 PF14015.1 gi|385777084|ref|YP_005649652.1| - 0.76 9.7 3.6 16 5.5 0.2 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF4231) Fer4_17 PF13534.1 gi|385777084|ref|YP_005649652.1| - 1.5 9.2 9.7 29 5.0 0.7 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|385777085|ref|YP_005649653.1| - 2.5e-29 102.6 1.1 3e-29 102.3 0.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385777085|ref|YP_005649653.1| - 7.6e-12 45.7 0.0 2.3e-08 34.3 0.0 3.0 1 1 2 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385777085|ref|YP_005649653.1| - 1.2e-09 37.5 0.3 6.6e-05 21.9 0.1 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|385777085|ref|YP_005649653.1| - 1.6e-06 28.4 3.3 0.0032 17.8 0.0 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385777085|ref|YP_005649653.1| - 2e-06 26.9 0.9 2.9e-05 23.1 0.1 2.4 2 1 1 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|385777085|ref|YP_005649653.1| - 3.7e-06 26.2 0.3 0.0032 16.6 0.0 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.1 gi|385777085|ref|YP_005649653.1| - 2.9e-05 23.9 0.3 6.7e-05 22.8 0.2 1.7 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|385777085|ref|YP_005649653.1| - 0.00012 21.1 6.2 0.00068 18.6 0.0 3.2 2 2 1 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|385777085|ref|YP_005649653.1| - 0.00018 20.0 0.5 0.081 11.3 0.0 2.9 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|385777085|ref|YP_005649653.1| - 0.00099 18.2 0.1 0.0058 15.7 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|385777085|ref|YP_005649653.1| - 0.022 13.6 0.2 0.14 11.0 0.1 2.2 3 0 0 3 3 3 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|385777085|ref|YP_005649653.1| - 0.026 13.4 0.0 4.4 6.1 0.0 2.7 2 1 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|385777085|ref|YP_005649653.1| - 0.092 11.7 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain FCH PF00611.18 gi|385777086|ref|YP_005649654.1| - 0.00077 19.5 2.0 0.00077 19.5 1.4 3.1 3 1 0 3 3 2 1 Fes/CIP4, and EFC/F-BAR homology domain AIP3 PF03915.8 gi|385777086|ref|YP_005649654.1| - 0.0014 17.6 13.1 0.0021 17.0 8.5 1.7 1 1 0 1 1 1 1 Actin interacting protein 3 Spectrin PF00435.16 gi|385777086|ref|YP_005649654.1| - 0.0031 17.7 6.9 0.1 12.8 0.4 2.5 2 0 0 2 2 2 1 Spectrin repeat Fzo_mitofusin PF04799.8 gi|385777086|ref|YP_005649654.1| - 0.018 14.3 1.5 0.018 14.3 1.1 2.9 2 1 0 2 2 2 0 fzo-like conserved region CENP-F_leu_zip PF10473.4 gi|385777086|ref|YP_005649654.1| - 0.019 14.8 13.8 0.069 13.0 2.3 2.4 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 OmpH PF03938.9 gi|385777086|ref|YP_005649654.1| - 0.019 14.8 3.7 0.54 10.1 0.3 2.4 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Baculo_PEP_C PF04513.7 gi|385777086|ref|YP_005649654.1| - 0.021 14.6 1.3 0.021 14.6 0.9 3.4 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|385777086|ref|YP_005649654.1| - 0.04 13.7 11.7 1.3 8.8 0.8 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Cytochrom_B562 PF07361.6 gi|385777086|ref|YP_005649654.1| - 0.053 13.9 7.4 1.4 9.3 0.3 3.5 1 1 2 3 3 3 0 Cytochrome b562 Syntaxin-6_N PF09177.6 gi|385777086|ref|YP_005649654.1| - 0.066 13.6 14.7 0.48 10.8 2.3 4.2 2 1 2 4 4 4 0 Syntaxin 6, N-terminal Cor1 PF04803.7 gi|385777086|ref|YP_005649654.1| - 0.11 12.3 13.3 0.075 12.8 1.6 3.1 3 0 0 3 3 3 0 Cor1/Xlr/Xmr conserved region PilJ PF13675.1 gi|385777086|ref|YP_005649654.1| - 0.12 12.6 0.3 3.2 8.0 0.0 2.5 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF883 PF05957.8 gi|385777086|ref|YP_005649654.1| - 0.14 12.5 4.4 1.3 9.4 0.2 3.2 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.13 gi|385777086|ref|YP_005649654.1| - 0.15 11.5 2.8 0.88 9.0 1.9 1.9 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain BMFP PF04380.8 gi|385777086|ref|YP_005649654.1| - 0.16 12.1 2.6 34 4.6 0.6 3.7 2 1 0 2 2 2 0 Membrane fusogenic activity Sec2p PF06428.6 gi|385777086|ref|YP_005649654.1| - 0.17 11.7 6.9 3.8 7.4 0.3 2.8 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p Tup_N PF08581.5 gi|385777086|ref|YP_005649654.1| - 0.2 11.8 11.9 1.3 9.2 0.5 4.1 3 1 0 3 3 2 0 Tup N-terminal Muted PF14942.1 gi|385777086|ref|YP_005649654.1| - 0.23 11.3 11.3 2.5 7.9 1.3 3.1 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein YlqD PF11068.3 gi|385777086|ref|YP_005649654.1| - 0.28 11.1 8.1 0.23 11.4 0.3 2.8 1 1 0 2 2 2 0 YlqD protein IL34 PF15036.1 gi|385777086|ref|YP_005649654.1| - 0.3 10.6 5.7 0.083 12.4 0.2 2.4 2 1 1 3 3 3 0 Interleukin 34 DUF3450 PF11932.3 gi|385777086|ref|YP_005649654.1| - 0.37 9.9 5.1 0.39 9.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Prominin PF05478.6 gi|385777086|ref|YP_005649654.1| - 0.4 8.1 24.3 0.049 11.1 2.2 2.1 2 0 0 2 2 2 0 Prominin ISG65-75 PF11727.3 gi|385777086|ref|YP_005649654.1| - 0.49 9.4 12.8 0.14 11.1 2.0 2.7 2 1 1 3 3 3 0 Invariant surface glycoprotein Sds3 PF08598.6 gi|385777086|ref|YP_005649654.1| - 0.61 9.5 16.5 0.076 12.5 4.1 2.7 2 1 0 2 2 2 0 Sds3-like Mt_ATP-synt_B PF05405.9 gi|385777086|ref|YP_005649654.1| - 0.68 9.3 12.7 0.1 12.0 3.0 2.5 2 0 0 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Mnd1 PF03962.10 gi|385777086|ref|YP_005649654.1| - 0.75 9.4 14.2 30 4.2 9.8 2.3 1 1 0 1 1 1 0 Mnd1 family AF0941-like PF14591.1 gi|385777086|ref|YP_005649654.1| - 0.82 9.7 17.5 0.031 14.3 2.1 3.1 3 1 0 3 3 2 0 AF0941-like DUF2265 PF10023.4 gi|385777086|ref|YP_005649654.1| - 0.87 8.6 5.0 0.4 9.7 0.4 2.1 1 1 1 2 2 2 0 Predicted aminopeptidase (DUF2265) DUF4473 PF14747.1 gi|385777086|ref|YP_005649654.1| - 1.4 9.1 9.4 9.9 6.4 0.8 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4473) Syntaxin PF00804.20 gi|385777086|ref|YP_005649654.1| - 1.8 8.7 20.2 0.29 11.3 4.1 2.8 1 1 1 2 2 2 0 Syntaxin DUF948 PF06103.6 gi|385777086|ref|YP_005649654.1| - 2.2 8.2 13.6 0.54 10.1 0.5 4.5 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) CR6_interact PF10147.4 gi|385777086|ref|YP_005649654.1| - 2.4 7.4 8.6 3.1 7.0 1.0 2.2 2 0 0 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Cep57_MT_bd PF06657.8 gi|385777086|ref|YP_005649654.1| - 3.3 7.7 9.0 3.1 7.8 0.7 3.0 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 IncA PF04156.9 gi|385777086|ref|YP_005649654.1| - 3.5 7.1 11.7 1.2 8.7 2.9 2.4 2 0 0 2 2 2 0 IncA protein BAG PF02179.11 gi|385777086|ref|YP_005649654.1| - 3.8 7.6 9.3 4.4 7.4 0.1 3.3 4 0 0 4 4 2 0 BAG domain MCPsignal PF00015.16 gi|385777086|ref|YP_005649654.1| - 4.3 6.8 7.7 32 3.9 3.6 2.7 2 1 0 2 2 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain H-kinase_dim PF02895.9 gi|385777086|ref|YP_005649654.1| - 8.4 6.8 9.2 2e+03 -0.9 6.3 3.4 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain Fib_alpha PF08702.5 gi|385777086|ref|YP_005649654.1| - 9.1 6.4 25.3 2.8 8.0 2.5 3.6 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family RseC_MucC PF04246.7 gi|385777087|ref|YP_005649655.1| - 1.3 8.5 3.4 2.4 7.7 2.4 1.4 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC CCSMST1 PF15013.1 gi|385777087|ref|YP_005649655.1| - 1.9 8.4 5.2 21 5.1 3.4 2.4 2 1 0 2 2 2 0 CCSMST1 family MS_channel PF00924.13 gi|385777088|ref|YP_005649656.1| - 2.3e-29 102.2 1.1 4.3e-29 101.3 0.8 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel Amidohydro_3 PF07969.6 gi|385777089|ref|YP_005649657.1| - 2.8e-25 89.3 0.0 4.4e-24 85.4 0.0 2.0 1 1 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385777089|ref|YP_005649657.1| - 1.7e-12 47.9 0.0 2.2e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|385777089|ref|YP_005649657.1| - 8.8e-06 25.4 0.0 3.6e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase UPF0016 PF01169.14 gi|385777090|ref|YP_005649658.1| - 1.5 9.0 14.3 3.2 7.9 2.4 2.4 2 1 0 2 2 2 0 Uncharacterized protein family UPF0016 YesK PF14150.1 gi|385777090|ref|YP_005649658.1| - 7.5 6.7 16.4 2.8 8.1 2.5 3.3 4 1 0 4 4 4 0 YesK-like protein FAA_hydrolase PF01557.13 gi|385777091|ref|YP_005649659.1| - 2.1e-68 230.0 0.0 2.6e-68 229.7 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TPP_enzyme_N PF02776.13 gi|385777092|ref|YP_005649660.1| - 8.9e-48 162.0 0.0 1.2e-45 155.0 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|385777092|ref|YP_005649660.1| - 2.4e-33 114.8 0.1 1.3e-32 112.4 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|385777092|ref|YP_005649660.1| - 3.2e-21 75.5 0.0 8.3e-21 74.1 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CW_binding_2 PF04122.7 gi|385777092|ref|YP_005649660.1| - 0.00096 19.3 0.0 1.2 9.3 0.0 2.9 3 0 0 3 3 3 2 Putative cell wall binding repeat 2 PB1 PF00564.19 gi|385777092|ref|YP_005649660.1| - 0.067 12.8 0.1 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 PB1 domain Glycos_transf_1 PF00534.15 gi|385777093|ref|YP_005649661.1| - 4e-32 110.9 0.4 4e-32 110.9 0.3 2.0 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385777093|ref|YP_005649661.1| - 6.1e-17 61.8 2.4 9.5e-17 61.2 1.7 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|385777093|ref|YP_005649661.1| - 3.1e-13 50.0 0.0 5.8e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385777093|ref|YP_005649661.1| - 2e-10 40.7 0.0 6.4e-10 39.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385777093|ref|YP_005649661.1| - 9.2e-06 25.8 0.0 2.6e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Fer4_7 PF12838.2 gi|385777094|ref|YP_005649662.1| - 1.7e-09 37.9 24.8 4.2e-05 23.8 6.2 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|385777094|ref|YP_005649662.1| - 2.6e-08 33.6 1.2 3.1e-08 33.4 0.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385777094|ref|YP_005649662.1| - 1e-07 32.0 7.0 1.5e-07 31.5 4.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385777094|ref|YP_005649662.1| - 1.8e-07 30.8 7.0 2.4e-07 30.4 4.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385777094|ref|YP_005649662.1| - 8.2e-06 25.4 11.4 0.00077 19.2 1.9 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385777094|ref|YP_005649662.1| - 1.1e-05 25.2 2.8 0.017 14.9 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777094|ref|YP_005649662.1| - 4.4e-05 23.4 2.3 0.15 12.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777094|ref|YP_005649662.1| - 9.1e-05 22.1 13.5 0.0011 18.7 2.4 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385777094|ref|YP_005649662.1| - 0.00084 20.0 2.1 0.95 10.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|385777094|ref|YP_005649662.1| - 0.002 17.7 7.2 0.012 15.2 1.4 2.1 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.1 gi|385777094|ref|YP_005649662.1| - 0.0037 17.5 5.7 0.47 10.8 0.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385777094|ref|YP_005649662.1| - 0.007 15.9 14.9 0.034 13.7 1.4 3.9 3 1 0 3 3 3 2 4Fe-4S binding domain ETF_QO PF05187.8 gi|385777094|ref|YP_005649662.1| - 0.011 15.7 0.1 0.015 15.2 0.1 1.2 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase Fer4_3 PF12798.2 gi|385777094|ref|YP_005649662.1| - 0.018 15.5 15.1 0.08 13.5 2.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385777094|ref|YP_005649662.1| - 0.16 12.4 3.6 1.9 8.9 0.3 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385777094|ref|YP_005649662.1| - 0.2 12.1 12.8 0.54 10.7 2.1 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Antistasin PF02822.9 gi|385777094|ref|YP_005649662.1| - 0.81 10.0 5.3 3.4 8.0 0.5 2.5 2 1 0 2 2 2 0 Antistasin family DAO PF01266.19 gi|385777095|ref|YP_005649663.1| - 1.3e-13 50.6 1.1 9.7e-06 24.7 0.4 2.5 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|385777095|ref|YP_005649663.1| - 2.1e-13 50.1 0.0 2.8e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385777095|ref|YP_005649663.1| - 6.7e-10 38.3 0.3 9.9e-10 37.8 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|385777095|ref|YP_005649663.1| - 3.4e-07 29.0 0.6 5.1e-06 25.2 0.4 2.2 1 1 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.9 gi|385777095|ref|YP_005649663.1| - 5.4e-07 28.5 1.1 0.00063 18.4 0.0 3.0 2 1 1 3 3 3 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|385777095|ref|YP_005649663.1| - 8e-07 28.2 0.0 1.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|385777095|ref|YP_005649663.1| - 3.3e-06 26.3 0.3 1.9e-05 23.8 0.2 2.0 1 1 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|385777095|ref|YP_005649663.1| - 7.9e-06 26.0 0.0 1.5e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385777095|ref|YP_005649663.1| - 1.1e-05 25.3 0.0 2.9e-05 24.0 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385777095|ref|YP_005649663.1| - 0.00013 21.1 0.1 0.00039 19.5 0.1 1.7 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|385777095|ref|YP_005649663.1| - 0.00036 20.5 0.5 0.0012 18.8 0.2 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|385777095|ref|YP_005649663.1| - 0.0011 17.9 0.4 0.0019 17.1 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|385777095|ref|YP_005649663.1| - 0.02 15.2 2.4 0.13 12.6 0.2 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|385777095|ref|YP_005649663.1| - 0.14 11.6 2.0 0.21 11.1 0.1 2.1 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Aida_N PF08910.5 gi|385777096|ref|YP_005649664.1| - 0.094 12.9 0.1 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 Aida N-terminus Usp PF00582.21 gi|385777097|ref|YP_005649665.1| - 1.9e-38 131.8 0.2 2.1e-38 131.6 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Sigma_reg_C PF13791.1 gi|385777097|ref|YP_005649665.1| - 0.016 15.2 0.3 0.02 14.9 0.2 1.1 1 0 0 1 1 1 0 Sigma factor regulator C-terminal Redoxin PF08534.5 gi|385777097|ref|YP_005649665.1| - 0.097 12.2 0.1 0.35 10.4 0.0 1.8 2 0 0 2 2 2 0 Redoxin GARS_N PF02844.10 gi|385777097|ref|YP_005649665.1| - 0.11 13.0 0.3 0.57 10.6 0.1 2.1 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain F_bP_aldolase PF01116.15 gi|385777097|ref|YP_005649665.1| - 0.12 11.5 0.1 0.49 9.4 0.1 1.8 1 1 1 2 2 2 0 Fructose-bisphosphate aldolase class-II Aldo_ket_red PF00248.16 gi|385777098|ref|YP_005649666.1| - 4.6e-68 229.0 0.0 5.3e-68 228.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family E1_dh PF00676.15 gi|385777099|ref|YP_005649667.1| - 5.6e-77 258.4 0.0 6.6e-77 258.1 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|385777099|ref|YP_005649667.1| - 3.9e-09 35.8 0.0 7.6e-09 34.8 0.0 1.4 2 0 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|385777099|ref|YP_005649667.1| - 2.7e-06 27.0 0.1 8e-06 25.5 0.1 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.19 gi|385777100|ref|YP_005649668.1| - 1e-43 148.9 0.1 1.7e-43 148.1 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|385777100|ref|YP_005649668.1| - 1.2e-35 122.0 0.1 1e-34 119.1 0.0 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain OrfB_IS605 PF01385.14 gi|385777101|ref|YP_005649669.1| - 2.5e-27 95.7 6.7 3.2e-27 95.4 4.7 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385777101|ref|YP_005649669.1| - 4.6e-24 83.8 0.1 9.4e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385777101|ref|YP_005649669.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385777101|ref|YP_005649669.1| - 0.027 14.0 0.4 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385777101|ref|YP_005649669.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385777101|ref|YP_005649669.1| - 0.12 11.9 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385777101|ref|YP_005649669.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385777101|ref|YP_005649669.1| - 0.29 10.9 0.8 9 6.1 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385777101|ref|YP_005649669.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385777101|ref|YP_005649669.1| - 4.7 7.1 5.1 4.6 7.1 0.3 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Antitoxin-MazE PF04014.13 gi|385777102|ref|YP_005649670.1| - 6.9e-05 22.4 1.4 0.00011 21.8 0.9 1.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|385777102|ref|YP_005649670.1| - 6.9e-05 22.5 0.0 7.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 MraZ protein DUF2375 PF09558.5 gi|385777102|ref|YP_005649670.1| - 0.086 12.6 0.1 0.26 11.1 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2375) DUF1296 PF06972.6 gi|385777103|ref|YP_005649671.1| - 0.027 14.4 0.2 0.18 11.7 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1296) DIM1 PF02966.11 gi|385777103|ref|YP_005649671.1| - 0.062 12.8 0.3 0.091 12.2 0.2 1.5 1 1 0 1 1 1 0 Mitosis protein DIM1 SNARE_assoc PF09335.6 gi|385777104|ref|YP_005649672.1| - 5.3e-22 78.3 6.7 5.3e-22 78.3 4.6 1.9 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF1206 PF06724.6 gi|385777104|ref|YP_005649672.1| - 0.06 13.1 0.5 0.06 13.1 0.4 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) Selenoprotein_S PF06936.6 gi|385777104|ref|YP_005649672.1| - 1.2 8.6 3.9 0.51 9.8 0.8 1.8 2 0 0 2 2 2 0 Selenoprotein S (SelS) Cad PF03596.8 gi|385777104|ref|YP_005649672.1| - 8.5 6.0 14.8 0.11 12.1 4.1 2.1 2 1 0 2 2 2 0 Cadmium resistance transporter MS_channel PF00924.13 gi|385777105|ref|YP_005649673.1| - 2.8e-17 62.7 7.7 2.8e-17 62.7 5.3 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel Ndc1_Nup PF09531.5 gi|385777105|ref|YP_005649673.1| - 0.1 11.0 3.7 0.13 10.6 2.6 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Gly-zipper_OmpA PF13436.1 gi|385777105|ref|YP_005649673.1| - 0.32 10.6 13.6 0.63 9.7 9.4 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain TraT PF05818.7 gi|385777105|ref|YP_005649673.1| - 2.7 7.3 4.9 6.4 6.1 2.6 2.0 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein DUF4117 PF13491.1 gi|385777105|ref|YP_005649673.1| - 3 7.2 14.0 0.88 8.9 7.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4117) CopD PF05425.8 gi|385777105|ref|YP_005649673.1| - 3.6 7.8 13.0 0.85 9.8 6.6 1.6 1 1 1 2 2 2 0 Copper resistance protein D AAA_14 PF13173.1 gi|385777106|ref|YP_005649674.1| - 1e-30 106.2 1.6 4.1e-30 104.2 0.0 2.5 3 0 0 3 3 3 1 AAA domain DUF4143 PF13635.1 gi|385777106|ref|YP_005649674.1| - 3.1e-13 49.6 0.2 5.7e-13 48.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_17 PF13207.1 gi|385777106|ref|YP_005649674.1| - 0.0088 16.8 3.1 0.032 15.0 0.8 2.8 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|385777106|ref|YP_005649674.1| - 0.026 14.6 0.0 1 9.4 0.0 2.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|385777106|ref|YP_005649674.1| - 0.075 13.0 0.0 0.74 9.7 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|385777106|ref|YP_005649674.1| - 1.1 9.5 4.2 2.3 8.5 0.0 3.1 3 1 1 4 4 4 0 AAA domain YesK PF14150.1 gi|385777108|ref|YP_005649676.1| - 0.14 12.2 0.3 0.14 12.2 0.2 1.7 2 0 0 2 2 2 0 YesK-like protein EamA PF00892.15 gi|385777108|ref|YP_005649676.1| - 0.16 11.9 4.3 0.4 10.7 0.7 2.1 2 0 0 2 2 2 0 EamA-like transporter family DUF4131 PF13567.1 gi|385777108|ref|YP_005649676.1| - 0.34 10.3 1.8 0.38 10.1 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) SdpI PF13630.1 gi|385777108|ref|YP_005649676.1| - 3.4 7.4 7.7 1.3 8.7 1.7 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family SSV1_ORF_D-335 PF07935.6 gi|385777111|ref|YP_005649679.1| - 3.3e-25 87.6 1.9 4.1e-25 87.3 1.3 1.1 1 0 0 1 1 1 1 ORF D-335-like protein InaF-motif PF15018.1 gi|385777112|ref|YP_005649680.1| - 0.067 12.6 0.2 0.097 12.1 0.1 1.4 1 0 0 1 1 1 0 TRP-interacting helix Phosphoesterase PF04185.9 gi|385777113|ref|YP_005649681.1| - 1.6e-77 261.2 5.0 4.9e-77 259.6 3.5 1.7 1 1 0 1 1 1 1 Phosphoesterase family DUF2299 PF10061.4 gi|385777114|ref|YP_005649682.1| - 4.6e-44 149.2 0.1 5.2e-44 149.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) tRNA_int_endo PF01974.12 gi|385777114|ref|YP_005649682.1| - 0.086 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 tRNA intron endonuclease, catalytic C-terminal domain HAD_2 PF13419.1 gi|385777115|ref|YP_005649683.1| - 2.8e-06 27.6 0.0 3.4e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Fer4_7 PF12838.2 gi|385777116|ref|YP_005649684.1| - 1.1e-06 28.9 19.5 0.003 17.8 0.8 3.6 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385777116|ref|YP_005649684.1| - 2.9e-05 23.7 23.9 0.00046 19.9 6.1 3.6 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385777116|ref|YP_005649684.1| - 4.6e-05 22.8 3.7 4.6e-05 22.8 2.6 5.1 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385777116|ref|YP_005649684.1| - 7.1e-05 22.9 22.4 0.013 15.7 4.2 4.0 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385777116|ref|YP_005649684.1| - 9.2e-05 22.1 23.4 0.00046 19.9 2.9 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385777116|ref|YP_005649684.1| - 0.00014 22.3 11.5 0.097 13.2 0.6 4.5 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|385777116|ref|YP_005649684.1| - 0.00025 20.8 6.3 0.00025 20.8 4.3 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777116|ref|YP_005649684.1| - 0.00032 20.4 1.8 0.00032 20.4 1.3 4.8 6 0 0 6 6 5 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385777116|ref|YP_005649684.1| - 0.0017 18.6 14.4 0.12 12.7 0.1 4.0 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385777116|ref|YP_005649684.1| - 0.0099 16.2 10.8 0.19 12.1 0.2 3.3 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777116|ref|YP_005649684.1| - 0.019 14.9 16.8 0.091 12.8 6.4 3.6 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|385777116|ref|YP_005649684.1| - 0.095 12.5 4.8 8.2 6.3 0.1 3.7 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster ProRS-C_1 PF09180.6 gi|385777116|ref|YP_005649684.1| - 7.9 6.4 13.5 0.09 12.7 0.6 3.5 3 1 1 4 4 4 0 Prolyl-tRNA synthetase, C-terminal Nitrate_red_del PF02613.10 gi|385777117|ref|YP_005649685.1| - 1.7e-08 34.3 0.0 2.4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4_11 PF13247.1 gi|385777118|ref|YP_005649686.1| - 4.1e-23 81.1 7.2 4.1e-23 81.1 5.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385777118|ref|YP_005649686.1| - 9.4e-15 54.6 16.1 6.4e-08 32.7 4.4 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385777118|ref|YP_005649686.1| - 5.3e-11 42.7 18.3 3.9e-05 23.9 4.1 2.8 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385777118|ref|YP_005649686.1| - 2.2e-08 33.7 17.0 0.00043 20.0 2.7 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777118|ref|YP_005649686.1| - 2.2e-05 24.0 26.2 0.0027 17.5 0.6 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385777118|ref|YP_005649686.1| - 9.1e-05 22.8 9.0 0.54 10.7 0.1 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777118|ref|YP_005649686.1| - 0.00036 20.4 18.4 0.00074 19.4 3.7 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385777118|ref|YP_005649686.1| - 0.0014 18.0 24.4 0.041 13.4 0.5 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385777118|ref|YP_005649686.1| - 0.0031 17.7 28.7 0.11 12.9 1.1 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|385777118|ref|YP_005649686.1| - 0.0053 17.2 33.8 0.61 10.7 4.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385777118|ref|YP_005649686.1| - 0.0075 16.6 18.2 0.08 13.3 0.1 3.7 2 1 2 4 4 4 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385777118|ref|YP_005649686.1| - 0.28 11.0 21.3 0.38 10.6 0.5 3.5 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385777118|ref|YP_005649686.1| - 2 9.2 17.8 1.5 9.6 0.1 3.9 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|385777118|ref|YP_005649686.1| - 3.9 8.1 16.5 0.39 11.3 1.2 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|385777119|ref|YP_005649687.1| - 3.9e-06 25.8 0.0 0.21 10.2 0.0 3.6 4 0 0 4 4 4 3 Molybdopterin oxidoreductase TAT_signal PF10518.4 gi|385777119|ref|YP_005649687.1| - 0.00043 20.0 0.3 0.0013 18.5 0.2 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.11 gi|385777119|ref|YP_005649687.1| - 0.047 13.5 0.2 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain TPR_11 PF13414.1 gi|385777120|ref|YP_005649688.1| - 1.6e-29 101.3 21.2 2.6e-11 43.0 2.9 4.7 3 2 2 6 6 6 3 TPR repeat TPR_19 PF14559.1 gi|385777120|ref|YP_005649688.1| - 6.2e-24 84.1 7.2 7.8e-07 29.3 0.3 4.3 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|385777120|ref|YP_005649688.1| - 3.4e-20 72.1 6.2 8.2e-06 26.3 0.1 4.6 3 2 1 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|385777120|ref|YP_005649688.1| - 1.1e-19 68.7 22.0 0.00025 20.7 0.0 8.2 8 1 0 8 8 8 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|385777120|ref|YP_005649688.1| - 1.2e-17 62.5 15.6 0.0013 18.7 0.0 7.4 7 1 1 8 8 8 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|385777120|ref|YP_005649688.1| - 9e-14 51.3 11.3 4.7e-06 26.6 0.1 4.6 1 1 4 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|385777120|ref|YP_005649688.1| - 1.4e-12 46.4 26.2 0.0042 16.7 0.0 7.8 8 1 0 8 8 8 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385777120|ref|YP_005649688.1| - 7.1e-12 44.8 2.1 0.088 13.4 0.0 5.8 4 2 3 7 7 6 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|385777120|ref|YP_005649688.1| - 5.8e-11 42.0 0.1 0.00028 20.6 0.0 4.0 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|385777120|ref|YP_005649688.1| - 9.8e-11 40.7 27.7 0.0019 17.7 0.1 8.3 8 1 0 8 8 8 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|385777120|ref|YP_005649688.1| - 2.5e-10 40.1 18.6 0.00017 21.4 0.6 5.3 2 2 4 6 6 6 5 Tetratricopeptide repeat ChAPs PF09295.5 gi|385777120|ref|YP_005649688.1| - 8.7e-07 28.0 1.1 0.0028 16.4 0.0 2.2 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) NARP1 PF12569.3 gi|385777120|ref|YP_005649688.1| - 7.1e-06 25.0 9.9 0.00028 19.7 0.2 3.6 1 1 3 4 4 4 4 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|385777120|ref|YP_005649688.1| - 1.9e-05 23.8 5.1 0.14 11.2 0.0 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|385777120|ref|YP_005649688.1| - 0.00022 21.4 12.2 2 9.0 1.0 6.1 7 0 0 7 7 6 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|385777120|ref|YP_005649688.1| - 0.00098 19.1 3.4 1.8 8.7 0.1 4.0 2 1 3 5 5 5 1 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|385777120|ref|YP_005649688.1| - 0.0047 16.1 6.0 0.092 11.9 1.1 3.4 1 1 0 2 2 2 1 Coatomer epsilon subunit YfdX PF10938.3 gi|385777120|ref|YP_005649688.1| - 0.01 15.4 1.8 1.7 8.2 0.0 3.7 2 2 0 4 4 4 0 YfdX protein Fis1_TPR_C PF14853.1 gi|385777120|ref|YP_005649688.1| - 0.091 12.6 14.2 0.46 10.3 2.3 4.2 3 1 2 5 5 4 0 Fis1 C-terminal tetratricopeptide repeat HrpB1_HrpK PF09613.5 gi|385777120|ref|YP_005649688.1| - 0.14 11.6 0.0 0.72 9.3 0.0 2.0 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF3856 PF12968.2 gi|385777120|ref|YP_005649688.1| - 0.26 11.1 2.6 2 8.2 0.1 3.4 3 1 0 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_7 PF13176.1 gi|385777120|ref|YP_005649688.1| - 2.2 8.2 10.3 85 3.3 0.0 5.5 7 0 0 7 7 6 0 Tetratricopeptide repeat MIT PF04212.13 gi|385777120|ref|YP_005649688.1| - 5.3 7.0 12.1 1.8 8.4 0.0 5.0 5 3 1 6 6 6 0 MIT (microtubule interacting and transport) domain NrfD PF03916.9 gi|385777121|ref|YP_005649689.1| - 4.7e-11 42.6 31.8 1.2e-09 38.0 18.1 2.4 2 1 0 2 2 2 2 Polysulphide reductase, NrfD TrmB PF01978.14 gi|385777122|ref|YP_005649690.1| - 0.00038 20.1 0.0 0.0007 19.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrn6 PF10214.4 gi|385777122|ref|YP_005649690.1| - 0.087 10.9 0.1 0.13 10.3 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor ADH_N PF08240.7 gi|385777124|ref|YP_005649692.1| - 2.1e-28 98.2 0.4 4.1e-28 97.3 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385777124|ref|YP_005649692.1| - 1.6e-23 82.7 0.1 3.8e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385777124|ref|YP_005649692.1| - 3.9e-06 27.7 0.0 7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase PALP PF00291.20 gi|385777124|ref|YP_005649692.1| - 0.0041 16.3 0.0 0.0065 15.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pyr_redox PF00070.22 gi|385777124|ref|YP_005649692.1| - 0.011 16.1 0.2 2.5 8.5 0.1 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.12 gi|385777124|ref|YP_005649692.1| - 0.031 13.1 0.0 0.05 12.4 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|385777124|ref|YP_005649692.1| - 0.036 14.0 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding Peptidase_C1_2 PF03051.10 gi|385777124|ref|YP_005649692.1| - 0.095 11.2 0.2 0.13 10.7 0.1 1.1 1 0 0 1 1 1 0 Peptidase C1-like family HTH_24 PF13412.1 gi|385777125|ref|YP_005649693.1| - 0.00015 21.0 0.7 0.00031 20.0 0.5 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|385777125|ref|YP_005649693.1| - 0.0004 20.3 0.0 0.00085 19.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385777125|ref|YP_005649693.1| - 0.0012 18.4 0.0 0.0026 17.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|385777125|ref|YP_005649693.1| - 0.26 11.1 5.6 0.074 12.8 1.4 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix OrfB_Zn_ribbon PF07282.6 gi|385777126|ref|YP_005649694.1| - 0.028 14.0 0.0 0.7 9.5 0.0 2.7 2 1 1 3 3 3 0 Putative transposase DNA-binding domain ERG4_ERG24 PF01222.12 gi|385777128|ref|YP_005649696.1| - 0.028 12.9 0.4 0.034 12.6 0.2 1.1 1 0 0 1 1 1 0 Ergosterol biosynthesis ERG4/ERG24 family DUF3093 PF11292.3 gi|385777128|ref|YP_005649696.1| - 0.048 13.4 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) DUF1289 PF06945.8 gi|385777128|ref|YP_005649696.1| - 0.33 10.4 1.0 2 7.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1289) EB_dh PF09459.5 gi|385777129|ref|YP_005649697.1| - 1.5e-70 237.5 4.8 1.9e-70 237.2 3.4 1.1 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Rifin_STEVOR PF02009.11 gi|385777129|ref|YP_005649697.1| - 0.23 11.0 2.1 0.31 10.6 1.5 1.1 1 0 0 1 1 1 0 Rifin/stevor family ATP_synth_reg PF14960.1 gi|385777129|ref|YP_005649697.1| - 1.6 8.0 4.9 12 5.2 0.2 2.6 2 0 0 2 2 2 0 ATP synthase regulation TMEM154 PF15102.1 gi|385777129|ref|YP_005649697.1| - 8.5 6.0 9.9 15 5.3 6.9 1.2 1 0 0 1 1 1 0 TMEM154 protein family Rieske PF00355.21 gi|385777131|ref|YP_005649699.1| - 6.7e-12 44.8 0.3 1.5e-11 43.7 0.2 1.6 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain CytB6-F_Fe-S PF08802.5 gi|385777131|ref|YP_005649699.1| - 0.47 10.5 0.0 0.47 10.5 0.0 2.6 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Cytochrom_B_N_2 PF13631.1 gi|385777132|ref|YP_005649700.1| - 2.5e-55 186.7 9.6 2.5e-55 186.7 6.7 4.0 4 1 1 5 5 5 2 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|385777132|ref|YP_005649700.1| - 8.4e-05 22.0 14.9 8.4e-05 22.0 10.3 3.6 3 1 1 4 4 4 1 Cytochrome b(N-terminal)/b6/petB ABM PF03992.11 gi|385777133|ref|YP_005649701.1| - 1.7e-16 60.0 0.0 1.9e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase SOR PF07682.6 gi|385777133|ref|YP_005649701.1| - 0.096 11.2 0.0 0.12 10.9 0.0 1.4 1 1 0 1 1 1 0 Sulphur oxygenase reductase HMA PF00403.21 gi|385777134|ref|YP_005649702.1| - 1e-08 35.1 0.5 7e-08 32.5 0.4 2.1 1 1 0 1 1 1 1 Heavy-metal-associated domain DUF929 PF06053.6 gi|385777135|ref|YP_005649703.1| - 1.3e-60 204.6 13.7 2.1e-60 203.9 9.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF929) Thioredoxin_7 PF13899.1 gi|385777135|ref|YP_005649703.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|385777135|ref|YP_005649703.1| - 0.016 15.3 0.0 0.056 13.6 0.0 1.9 2 0 0 2 2 2 0 Thioredoxin-like domain SpoIIIAH PF12685.2 gi|385777136|ref|YP_005649704.1| - 0.028 13.9 0.9 0.043 13.3 0.6 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein SoxE PF06525.6 gi|385777136|ref|YP_005649704.1| - 2.9 7.1 18.0 0.42 9.8 8.2 2.6 3 0 0 3 3 3 0 Sulfocyanin (SoxE) Mucin PF01456.12 gi|385777136|ref|YP_005649704.1| - 8.7 6.1 38.2 4.6 7.0 24.7 1.8 2 0 0 2 2 2 0 Mucin-like glycoprotein Fer4_10 PF13237.1 gi|385777137|ref|YP_005649705.1| - 5.7e-08 32.4 4.6 1e-07 31.5 3.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385777137|ref|YP_005649705.1| - 6.3e-08 32.8 3.5 0.0015 18.9 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385777137|ref|YP_005649705.1| - 9.8e-07 28.9 7.0 2.3e-06 27.7 4.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777137|ref|YP_005649705.1| - 0.00038 20.1 8.6 0.032 14.1 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385777137|ref|YP_005649705.1| - 0.0006 20.0 1.9 0.31 11.4 0.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385777137|ref|YP_005649705.1| - 0.001 19.7 3.1 0.17 12.6 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|385777137|ref|YP_005649705.1| - 0.004 16.9 10.9 0.097 12.5 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385777137|ref|YP_005649705.1| - 0.0046 16.7 3.8 0.01 15.6 2.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777137|ref|YP_005649705.1| - 0.0051 16.7 10.1 0.006 16.5 4.2 2.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|385777137|ref|YP_005649705.1| - 0.0061 16.4 2.6 0.012 15.4 1.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385777137|ref|YP_005649705.1| - 0.017 14.7 0.8 0.017 14.7 0.6 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385777137|ref|YP_005649705.1| - 0.27 11.6 8.9 1.2 9.6 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|385777137|ref|YP_005649705.1| - 0.36 10.4 4.0 0.25 10.9 1.0 1.9 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|385777137|ref|YP_005649705.1| - 0.6 10.8 14.0 0.1 13.1 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain zf-C2H2_jaz PF12171.3 gi|385777138|ref|YP_005649706.1| - 0.02 15.0 1.2 0.037 14.1 0.9 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding HTH_24 PF13412.1 gi|385777139|ref|YP_005649707.1| - 2.6e-21 74.7 7.6 3.3e-14 52.0 0.4 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385777139|ref|YP_005649707.1| - 4.1e-16 58.2 0.4 3.6e-09 36.0 0.0 2.6 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|385777139|ref|YP_005649707.1| - 1e-07 31.4 1.2 7.5e-06 25.5 0.2 2.4 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|385777139|ref|YP_005649707.1| - 1.3e-06 28.0 0.5 0.0053 16.4 0.1 2.7 2 0 0 2 2 2 2 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|385777139|ref|YP_005649707.1| - 2.2e-06 27.2 0.5 0.037 13.7 0.1 2.4 2 0 0 2 2 2 2 MarR family MarR_2 PF12802.2 gi|385777139|ref|YP_005649707.1| - 2.7e-05 23.7 0.1 0.011 15.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|385777139|ref|YP_005649707.1| - 0.00011 22.1 0.0 0.84 9.7 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|385777139|ref|YP_005649707.1| - 0.00014 21.8 0.1 0.002 18.1 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.1 gi|385777139|ref|YP_005649707.1| - 0.00027 20.8 0.0 0.24 11.4 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|385777139|ref|YP_005649707.1| - 0.00067 19.2 0.9 0.28 10.8 0.2 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|385777139|ref|YP_005649707.1| - 0.00099 18.6 0.1 0.44 10.2 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.2 gi|385777139|ref|YP_005649707.1| - 0.0013 18.4 0.0 2.1 8.2 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|385777139|ref|YP_005649707.1| - 0.0032 17.2 3.8 0.66 9.8 0.2 3.4 3 0 0 3 3 3 1 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|385777139|ref|YP_005649707.1| - 0.0036 16.9 0.2 0.78 9.4 0.1 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|385777139|ref|YP_005649707.1| - 0.0042 16.8 0.9 0.042 13.6 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|385777139|ref|YP_005649707.1| - 0.0045 17.2 0.1 3.3 8.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_39 PF14090.1 gi|385777139|ref|YP_005649707.1| - 0.0089 15.4 0.2 1.8 8.1 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|385777139|ref|YP_005649707.1| - 0.013 15.4 0.5 0.5 10.2 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain EAP30 PF04157.11 gi|385777139|ref|YP_005649707.1| - 0.023 13.8 0.0 0.054 12.6 0.0 1.6 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_Crp_2 PF13545.1 gi|385777139|ref|YP_005649707.1| - 0.036 13.8 0.1 4 7.3 0.1 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|385777139|ref|YP_005649707.1| - 0.046 13.1 0.1 3.5 7.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 Put_DNA-bind_N PF06971.8 gi|385777139|ref|YP_005649707.1| - 0.056 13.2 1.4 0.31 10.8 0.5 2.3 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus LexA_DNA_bind PF01726.11 gi|385777139|ref|YP_005649707.1| - 0.062 12.8 0.3 0.33 10.5 0.1 2.0 2 0 0 2 2 2 0 LexA DNA binding domain HTH_10 PF04967.7 gi|385777139|ref|YP_005649707.1| - 0.076 12.6 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain Sigma70_ECF PF07638.6 gi|385777139|ref|YP_005649707.1| - 0.084 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor DUF1059 PF06348.6 gi|385777140|ref|YP_005649708.1| - 4.4e-25 87.2 2.2 4.9e-25 87.1 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) WaaY PF06176.6 gi|385777140|ref|YP_005649708.1| - 0.022 13.9 0.6 0.025 13.8 0.4 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) IF2_N PF04760.10 gi|385777140|ref|YP_005649708.1| - 0.079 12.6 2.2 0.29 10.8 1.8 1.7 1 1 1 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF1059 PF06348.6 gi|385777141|ref|YP_005649709.1| - 2.4e-55 184.1 0.4 5.7e-27 93.3 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF1059) Zn-ribbon_8 PF09723.5 gi|385777141|ref|YP_005649709.1| - 0.019 14.9 1.5 0.092 12.7 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain IF2_N PF04760.10 gi|385777141|ref|YP_005649709.1| - 0.12 11.9 1.7 0.27 10.9 0.2 2.1 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region PqqA PF08042.6 gi|385777141|ref|YP_005649709.1| - 0.57 9.9 2.4 19 5.0 0.1 2.4 2 0 0 2 2 2 0 PqqA family DUF871 PF05913.6 gi|385777143|ref|YP_005649711.1| - 4.4e-06 25.7 0.1 4.4e-06 25.7 0.1 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF871) Transposase_20 PF02371.11 gi|385777144|ref|YP_005649712.1| - 2.5e-06 27.4 0.2 3.5e-06 27.0 0.1 1.3 1 1 0 1 1 1 1 Transposase IS116/IS110/IS902 family AMP-binding PF00501.23 gi|385777145|ref|YP_005649713.1| - 4.9e-74 249.1 0.0 5.9e-74 248.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385777145|ref|YP_005649713.1| - 5.2e-15 56.1 0.0 1.2e-14 55.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain FmdA_AmdA PF03069.10 gi|385777146|ref|YP_005649714.1| - 5.1e-66 222.8 0.1 4e-37 127.7 0.1 2.2 1 1 1 2 2 2 2 Acetamidase/Formamidase family DUF308 PF03729.8 gi|385777147|ref|YP_005649715.1| - 0.016 15.1 1.4 0.04 13.9 1.0 1.6 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) SP_C-Propep PF08999.5 gi|385777147|ref|YP_005649715.1| - 1 8.8 3.1 1.7 8.2 2.1 1.3 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide Acetyltransf_1 PF00583.19 gi|385777148|ref|YP_005649716.1| - 9.1e-12 44.8 0.0 1.6e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|385777148|ref|YP_005649716.1| - 4.8e-10 39.5 0.0 5.8e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|385777148|ref|YP_005649716.1| - 9.4e-09 35.5 0.0 1.2e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385777148|ref|YP_005649716.1| - 6.2e-08 32.7 0.1 8.2e-08 32.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385777148|ref|YP_005649716.1| - 2.7e-05 24.2 0.0 4.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385777148|ref|YP_005649716.1| - 0.001 18.7 0.0 0.0023 17.6 0.0 1.6 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|385777148|ref|YP_005649716.1| - 0.0056 16.6 0.0 0.013 15.4 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385777148|ref|YP_005649716.1| - 0.0091 15.8 0.1 0.12 12.2 0.1 2.4 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|385777148|ref|YP_005649716.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|385777148|ref|YP_005649716.1| - 0.029 14.2 0.0 0.048 13.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase POR_N PF01855.14 gi|385777150|ref|YP_005649718.1| - 2.1e-63 213.9 0.1 3.2e-63 213.3 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|385777150|ref|YP_005649718.1| - 3e-30 105.3 0.5 3.3e-29 102.0 0.2 2.4 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|385777150|ref|YP_005649718.1| - 2.9e-07 30.4 0.0 3.4e-06 27.0 0.0 2.7 3 1 0 3 3 3 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|385777150|ref|YP_005649718.1| - 3e-06 26.8 0.1 2.5e-05 23.8 0.2 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TRAPPC9-Trs120 PF08626.6 gi|385777150|ref|YP_005649718.1| - 0.026 11.8 1.2 0.035 11.4 0.8 1.1 1 0 0 1 1 1 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit Chlorovi_GP_rpt PF06598.6 gi|385777150|ref|YP_005649718.1| - 7.1 6.5 6.9 23 4.9 0.5 3.3 3 0 0 3 3 3 0 Chlorovirus glycoprotein repeat TPP_enzyme_C PF02775.16 gi|385777151|ref|YP_005649719.1| - 3.4e-31 107.8 0.1 6e-31 107.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|385777151|ref|YP_005649719.1| - 1.8e-11 43.7 0.6 1.4e-10 40.9 0.2 2.4 2 1 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal nlz1 PF12402.3 gi|385777151|ref|YP_005649719.1| - 0.12 12.7 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 NocA-like zinc-finger protein 1 ETF PF01012.16 gi|385777152|ref|YP_005649720.1| - 5.4e-79 263.6 0.0 2.8e-38 131.2 0.1 2.2 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|385777152|ref|YP_005649720.1| - 5.6e-33 112.4 0.4 1.5e-32 111.0 0.3 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain GatB_Yqey PF02637.13 gi|385777152|ref|YP_005649720.1| - 0.029 14.0 0.0 0.12 12.0 0.0 1.9 1 1 0 1 1 1 0 GatB domain PmbA_TldD PF01523.11 gi|385777152|ref|YP_005649720.1| - 0.091 12.0 0.5 0.84 8.8 0.0 2.1 1 1 1 2 2 2 0 Putative modulator of DNA gyrase DAO PF01266.19 gi|385777153|ref|YP_005649721.1| - 1.3e-20 73.6 1.4 9.5e-12 44.4 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|385777153|ref|YP_005649721.1| - 6.6e-12 45.2 0.5 9.8e-12 44.6 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385777153|ref|YP_005649721.1| - 9.5e-12 44.0 3.1 1.2e-07 30.5 0.4 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|385777153|ref|YP_005649721.1| - 3.1e-11 43.7 0.0 1.2e-10 41.7 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|385777153|ref|YP_005649721.1| - 5.9e-10 38.5 0.3 5.9e-10 38.5 0.2 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|385777153|ref|YP_005649721.1| - 6.6e-10 39.1 2.1 1.9e-09 37.6 1.5 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385777153|ref|YP_005649721.1| - 1.9e-07 30.2 1.3 1.9e-07 30.2 0.9 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|385777153|ref|YP_005649721.1| - 1.3e-06 27.7 3.9 0.00075 18.6 2.4 3.0 2 1 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|385777153|ref|YP_005649721.1| - 2.1e-06 26.8 1.5 6.1e-06 25.3 0.8 1.9 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|385777153|ref|YP_005649721.1| - 6.6e-06 26.0 0.2 1.4e-05 24.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|385777153|ref|YP_005649721.1| - 1.2e-05 24.5 0.1 2.1e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|385777153|ref|YP_005649721.1| - 3.3e-05 24.2 2.0 0.0031 17.8 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385777153|ref|YP_005649721.1| - 0.0048 16.6 3.0 0.11 12.2 0.2 2.5 2 1 0 2 2 2 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|385777153|ref|YP_005649721.1| - 0.041 13.4 0.0 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|385777153|ref|YP_005649721.1| - 0.048 13.3 0.6 0.094 12.3 0.4 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385777153|ref|YP_005649721.1| - 0.081 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Fer4_10 PF13237.1 gi|385777154|ref|YP_005649722.1| - 1.1e-08 34.7 10.9 1.6e-08 34.2 7.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385777154|ref|YP_005649722.1| - 2.4e-08 34.1 11.3 0.00036 20.8 2.0 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777154|ref|YP_005649722.1| - 6.4e-08 32.0 14.0 4.5e-05 23.1 2.2 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|385777154|ref|YP_005649722.1| - 4.1e-07 29.3 18.7 9.3e-06 25.0 2.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|385777154|ref|YP_005649722.1| - 6.4e-07 28.9 17.6 0.00048 19.8 2.3 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385777154|ref|YP_005649722.1| - 2.8e-06 27.4 11.5 2.2e-05 24.6 8.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777154|ref|YP_005649722.1| - 1.9e-05 24.6 6.0 0.0003 20.7 0.4 2.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385777154|ref|YP_005649722.1| - 0.0001 22.3 13.7 0.0018 18.4 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.8 gi|385777154|ref|YP_005649722.1| - 0.0002 21.3 0.2 0.00026 20.9 0.1 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase Fer4_11 PF13247.1 gi|385777154|ref|YP_005649722.1| - 0.00046 20.0 5.2 0.00069 19.4 3.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385777154|ref|YP_005649722.1| - 0.00055 19.7 12.4 0.0017 18.1 8.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|385777154|ref|YP_005649722.1| - 0.0017 17.9 4.8 0.002 17.7 3.3 1.1 1 0 0 1 1 1 1 Growth factor receptor domain IV Fer4_16 PF13484.1 gi|385777154|ref|YP_005649722.1| - 0.0026 18.4 8.3 0.016 15.9 0.3 2.3 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|385777154|ref|YP_005649722.1| - 0.0031 17.9 17.0 0.016 15.7 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385777154|ref|YP_005649722.1| - 0.0039 17.4 10.5 1.1 9.6 7.9 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385777154|ref|YP_005649722.1| - 0.16 12.3 2.3 0.16 12.3 1.6 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|385777154|ref|YP_005649722.1| - 0.49 10.8 14.1 0.16 12.4 3.0 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain A2L_zn_ribbon PF08792.5 gi|385777154|ref|YP_005649722.1| - 3.8 7.0 6.3 1.2 8.7 0.9 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain PPDK_N PF01326.14 gi|385777155|ref|YP_005649723.1| - 2.2e-71 240.6 0.0 2.6e-71 240.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CbiA PF01656.18 gi|385777155|ref|YP_005649723.1| - 0.11 11.8 0.2 0.2 11.0 0.1 1.6 1 1 1 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain FdhD-NarQ PF02634.10 gi|385777156|ref|YP_005649724.1| - 1.3e-73 247.3 0.0 1.5e-73 247.1 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF1641 PF07849.6 gi|385777157|ref|YP_005649725.1| - 3.7e-15 55.2 0.1 6.3e-15 54.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Molybdopterin PF00384.17 gi|385777158|ref|YP_005649726.1| - 5.5e-87 292.2 0.0 7.1e-87 291.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385777158|ref|YP_005649726.1| - 1.7e-21 76.0 0.0 4e-21 74.9 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|385777158|ref|YP_005649726.1| - 2.7e-18 65.5 0.4 2.7e-18 65.5 0.3 2.3 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.1 gi|385777158|ref|YP_005649726.1| - 3.2e-16 58.8 0.0 7.3e-16 57.7 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.22 gi|385777158|ref|YP_005649726.1| - 2.7e-11 42.5 19.4 3.7e-06 26.2 2.4 3.7 3 0 0 3 3 3 2 4Fe-4S binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|385777158|ref|YP_005649726.1| - 1.2e-09 37.2 0.8 1.2e-09 37.2 0.6 2.1 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_21 PF14697.1 gi|385777158|ref|YP_005649726.1| - 5.7e-08 32.5 6.0 5.7e-08 32.5 4.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|385777158|ref|YP_005649726.1| - 9.5e-08 31.6 4.1 1.4e-07 31.1 0.1 2.7 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.2 gi|385777158|ref|YP_005649726.1| - 1.7e-07 30.7 19.2 0.00028 20.6 2.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385777158|ref|YP_005649726.1| - 2.1e-07 31.1 9.5 2.1e-07 31.1 6.6 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385777158|ref|YP_005649726.1| - 2.6e-06 27.1 11.3 2.6e-06 27.1 7.9 3.4 2 2 2 4 4 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385777158|ref|YP_005649726.1| - 2.9e-06 27.4 10.0 2.9e-06 27.4 6.9 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777158|ref|YP_005649726.1| - 7.9e-06 25.8 9.0 7.9e-06 25.8 6.3 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777158|ref|YP_005649726.1| - 2.3e-05 24.0 11.2 0.00051 19.8 1.0 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385777158|ref|YP_005649726.1| - 0.00029 21.5 15.1 0.0031 18.2 2.2 3.6 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|385777158|ref|YP_005649726.1| - 0.001 19.3 15.0 0.14 12.4 2.4 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385777158|ref|YP_005649726.1| - 0.0017 18.8 5.6 0.16 12.5 1.1 2.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|385777158|ref|YP_005649726.1| - 0.0024 18.2 1.0 0.0024 18.2 0.7 3.2 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385777158|ref|YP_005649726.1| - 0.0061 16.9 6.5 1.2 9.5 0.1 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|385777158|ref|YP_005649726.1| - 1.9 9.2 34.4 0.057 14.0 5.4 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain Oxidored_molyb PF00174.14 gi|385777160|ref|YP_005649728.1| - 1.4e-39 135.2 0.0 1.7e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain UPF0183 PF03676.9 gi|385777160|ref|YP_005649728.1| - 0.031 12.8 0.0 0.34 9.4 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0183) TrkA_N PF02254.13 gi|385777161|ref|YP_005649729.1| - 2.7e-13 49.9 0.4 4.9e-13 49.0 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|385777161|ref|YP_005649729.1| - 4.3e-07 29.4 0.0 1.7e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 TrkA-C domain MCR_gamma PF02240.11 gi|385777161|ref|YP_005649729.1| - 0.081 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit Ion_trans_2 PF07885.11 gi|385777161|ref|YP_005649729.1| - 0.27 10.9 8.4 0.53 10.0 5.9 1.5 1 0 0 1 1 1 0 Ion channel HTH_45 PF14947.1 gi|385777162|ref|YP_005649730.1| - 6.6e-23 80.3 0.6 8.9e-23 79.9 0.4 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|385777162|ref|YP_005649730.1| - 9.1e-05 22.1 0.1 0.00011 21.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF1495 PF07381.6 gi|385777162|ref|YP_005649730.1| - 0.044 13.4 0.2 0.074 12.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) TBPIP PF07106.8 gi|385777162|ref|YP_005649730.1| - 0.045 13.2 0.4 0.058 12.9 0.3 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_IclR PF09339.5 gi|385777162|ref|YP_005649730.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF762 PF05555.6 gi|385777162|ref|YP_005649730.1| - 0.076 12.2 0.1 0.09 12.0 0.1 1.1 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF762) TrmB PF01978.14 gi|385777162|ref|YP_005649730.1| - 0.079 12.6 0.1 0.48 10.1 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF3781 PF12636.2 gi|385777162|ref|YP_005649730.1| - 0.55 10.2 2.7 1.8 8.5 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3781) DUF3211 PF11485.3 gi|385777163|ref|YP_005649731.1| - 3.1e-38 130.9 0.5 3.4e-38 130.7 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) MS_channel PF00924.13 gi|385777164|ref|YP_005649732.1| - 3.7e-18 65.6 9.5 3.7e-18 65.6 6.6 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel Strabismus PF06638.6 gi|385777164|ref|YP_005649732.1| - 1.5 7.0 6.6 2 6.6 4.6 1.1 1 0 0 1 1 1 0 Strabismus protein DUF3464 PF11947.3 gi|385777165|ref|YP_005649733.1| - 0.7 9.3 1.9 1.9 7.9 1.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) AAA PF00004.24 gi|385777166|ref|YP_005649734.1| - 8.5e-76 252.4 0.0 3.5e-37 127.5 0.0 2.6 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|385777166|ref|YP_005649734.1| - 1.3e-20 74.3 0.6 2.4e-10 41.2 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|385777166|ref|YP_005649734.1| - 2.4e-15 56.8 7.2 0.00019 21.5 0.1 4.9 3 2 1 4 4 3 3 AAA domain AAA_18 PF13238.1 gi|385777166|ref|YP_005649734.1| - 5.9e-15 55.7 0.0 3.2e-06 27.4 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|385777166|ref|YP_005649734.1| - 5.9e-14 51.9 2.6 1.2e-05 25.0 0.3 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|385777166|ref|YP_005649734.1| - 6.6e-14 51.9 0.0 9.1e-07 28.8 0.0 2.7 2 1 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|385777166|ref|YP_005649734.1| - 6.7e-14 51.4 0.0 1.4e-06 27.5 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|385777166|ref|YP_005649734.1| - 6.9e-12 45.4 0.0 7.3e-06 25.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|385777166|ref|YP_005649734.1| - 6.1e-11 41.6 0.2 0.00014 20.6 0.0 2.6 3 0 0 3 3 2 2 TIP49 C-terminus AAA_16 PF13191.1 gi|385777166|ref|YP_005649734.1| - 7.7e-11 42.3 0.3 0.0014 18.6 0.0 3.8 2 2 1 3 3 3 2 AAA ATPase domain AAA_28 PF13521.1 gi|385777166|ref|YP_005649734.1| - 2.2e-10 40.7 0.0 0.00027 20.9 0.0 3.2 3 0 0 3 3 3 2 AAA domain RNA_helicase PF00910.17 gi|385777166|ref|YP_005649734.1| - 7.4e-10 38.9 0.0 0.00099 19.2 0.0 3.0 3 0 0 3 3 2 2 RNA helicase IstB_IS21 PF01695.12 gi|385777166|ref|YP_005649734.1| - 1e-09 38.0 0.7 0.00074 18.9 0.0 3.4 3 1 0 4 4 3 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|385777166|ref|YP_005649734.1| - 2.2e-09 36.6 0.0 0.0011 18.1 0.0 2.8 2 1 0 2 2 2 2 Zeta toxin AAA_2 PF07724.9 gi|385777166|ref|YP_005649734.1| - 3.2e-09 36.9 0.0 0.00012 22.0 0.0 2.9 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|385777166|ref|YP_005649734.1| - 3.5e-09 35.9 0.0 0.0012 17.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) SKI PF01202.17 gi|385777166|ref|YP_005649734.1| - 1.1e-08 35.1 0.0 0.0046 16.8 0.0 2.7 2 0 0 2 2 2 2 Shikimate kinase AAA_19 PF13245.1 gi|385777166|ref|YP_005649734.1| - 1.3e-08 34.4 0.1 0.0029 17.3 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain Sigma54_activat PF00158.21 gi|385777166|ref|YP_005649734.1| - 9.1e-08 31.7 0.2 0.41 10.1 0.0 3.8 4 0 0 4 4 3 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|385777166|ref|YP_005649734.1| - 2.1e-07 30.5 6.0 0.088 12.1 0.0 4.2 3 1 0 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|385777166|ref|YP_005649734.1| - 2.8e-07 29.9 0.0 0.022 13.9 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|385777166|ref|YP_005649734.1| - 3.4e-07 30.0 3.9 0.0051 16.4 0.1 2.6 2 1 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|385777166|ref|YP_005649734.1| - 4e-07 30.1 0.0 0.0029 17.6 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|385777166|ref|YP_005649734.1| - 7e-07 29.1 0.3 0.029 14.0 0.0 3.9 2 2 0 3 3 3 2 Archaeal ATPase UPF0079 PF02367.12 gi|385777166|ref|YP_005649734.1| - 4.4e-06 26.3 0.0 0.13 11.9 0.0 3.1 3 0 0 3 3 3 2 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|385777166|ref|YP_005649734.1| - 6.8e-06 25.1 0.1 0.044 12.6 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|385777166|ref|YP_005649734.1| - 1.2e-05 25.0 1.0 0.32 10.6 0.0 4.0 3 1 1 4 4 4 2 NACHT domain Cytidylate_kin2 PF13189.1 gi|385777166|ref|YP_005649734.1| - 1.3e-05 25.1 0.0 0.015 15.2 0.0 2.9 3 0 0 3 3 2 1 Cytidylate kinase-like family ABC_tran PF00005.22 gi|385777166|ref|YP_005649734.1| - 1.7e-05 25.1 0.0 0.16 12.3 0.0 2.7 2 0 0 2 2 2 2 ABC transporter KTI12 PF08433.5 gi|385777166|ref|YP_005649734.1| - 2e-05 23.9 1.0 0.063 12.4 0.0 3.1 3 0 0 3 3 3 2 Chromatin associated protein KTI12 NB-ARC PF00931.17 gi|385777166|ref|YP_005649734.1| - 3.4e-05 22.8 0.0 0.18 10.5 0.0 3.4 5 0 0 5 5 3 2 NB-ARC domain NTPase_1 PF03266.10 gi|385777166|ref|YP_005649734.1| - 4.7e-05 23.1 0.6 0.26 11.0 0.0 3.6 4 0 0 4 4 3 1 NTPase AAA_3 PF07726.6 gi|385777166|ref|YP_005649734.1| - 6e-05 22.6 0.0 0.44 10.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|385777166|ref|YP_005649734.1| - 7.8e-05 21.9 3.0 3 6.9 0.1 4.4 3 1 1 4 4 4 0 KaiC AAA_23 PF13476.1 gi|385777166|ref|YP_005649734.1| - 8.1e-05 23.0 5.8 0.06 13.6 0.6 3.1 3 1 0 3 3 2 2 AAA domain AAA_11 PF13086.1 gi|385777166|ref|YP_005649734.1| - 9.8e-05 22.0 0.0 0.31 10.5 0.0 2.5 2 1 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|385777166|ref|YP_005649734.1| - 0.00013 21.7 0.1 0.53 9.8 0.0 2.9 2 1 0 2 2 2 2 Bacterial dnaA protein PhoH PF02562.11 gi|385777166|ref|YP_005649734.1| - 0.00013 21.2 0.2 0.25 10.5 0.0 2.9 2 0 0 2 2 2 2 PhoH-like protein AAA_30 PF13604.1 gi|385777166|ref|YP_005649734.1| - 0.00019 21.0 0.6 0.35 10.4 0.1 2.8 3 0 0 3 3 2 1 AAA domain KAP_NTPase PF07693.9 gi|385777166|ref|YP_005649734.1| - 0.00047 19.2 1.3 0.5 9.3 0.1 3.7 2 2 2 4 4 4 1 KAP family P-loop domain T2SE PF00437.15 gi|385777166|ref|YP_005649734.1| - 0.00075 18.4 0.0 0.23 10.3 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein Rad17 PF03215.10 gi|385777166|ref|YP_005649734.1| - 0.00078 18.2 0.0 0.28 9.8 0.0 2.4 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|385777166|ref|YP_005649734.1| - 0.00078 18.9 8.9 2.5 7.4 0.1 4.8 4 2 2 6 6 4 0 AAA-like domain Viral_helicase1 PF01443.13 gi|385777166|ref|YP_005649734.1| - 0.0011 18.4 0.0 0.1 12.0 0.0 2.7 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|385777166|ref|YP_005649734.1| - 0.0018 17.7 0.0 1.8 8.1 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|385777166|ref|YP_005649734.1| - 0.002 17.3 0.0 0.93 8.6 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|385777166|ref|YP_005649734.1| - 0.0022 17.9 0.1 1.7 8.6 0.0 3.2 3 0 0 3 3 2 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|385777166|ref|YP_005649734.1| - 0.0024 17.3 0.0 1.8 8.0 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation IPT PF01745.11 gi|385777166|ref|YP_005649734.1| - 0.0024 17.0 0.0 1.5 7.9 0.0 2.5 2 0 0 2 2 2 1 Isopentenyl transferase CPT PF07931.7 gi|385777166|ref|YP_005649734.1| - 0.0028 17.3 0.0 1.7 8.2 0.0 2.4 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein ADK PF00406.17 gi|385777166|ref|YP_005649734.1| - 0.0037 17.1 0.0 1.5 8.7 0.0 2.9 2 0 0 2 2 2 1 Adenylate kinase APS_kinase PF01583.15 gi|385777166|ref|YP_005649734.1| - 0.005 16.5 0.0 2.5 7.7 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase 6PF2K PF01591.13 gi|385777166|ref|YP_005649734.1| - 0.0056 15.7 0.0 0.91 8.5 0.0 3.2 4 0 0 4 4 3 1 6-phosphofructo-2-kinase DUF2075 PF09848.4 gi|385777166|ref|YP_005649734.1| - 0.0061 15.5 0.0 2.4 7.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|385777166|ref|YP_005649734.1| - 0.0076 15.9 0.0 1.9 8.2 0.0 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.16 gi|385777166|ref|YP_005649734.1| - 0.017 14.6 0.0 4.6 6.6 0.0 2.8 2 0 0 2 2 2 0 Guanylate kinase SRP54 PF00448.17 gi|385777166|ref|YP_005649734.1| - 0.018 14.4 0.5 3.6 6.9 0.1 2.8 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|385777166|ref|YP_005649734.1| - 0.039 12.7 0.1 0.44 9.2 0.0 2.2 2 0 0 2 2 2 0 ArgK protein ResIII PF04851.10 gi|385777166|ref|YP_005649734.1| - 0.043 13.6 0.0 8.8 6.1 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit MCM PF00493.18 gi|385777166|ref|YP_005649734.1| - 0.053 12.3 0.0 20 3.8 0.0 3.2 3 0 0 3 3 3 0 MCM2/3/5 family Thymidylate_kin PF02223.12 gi|385777166|ref|YP_005649734.1| - 0.056 12.8 0.0 11 5.3 0.0 2.6 2 0 0 2 2 2 0 Thymidylate kinase AAA_13 PF13166.1 gi|385777166|ref|YP_005649734.1| - 0.074 11.5 1.1 7.3 4.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|385777166|ref|YP_005649734.1| - 0.095 12.1 0.0 8.9 5.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PEPCK_ATP PF01293.15 gi|385777166|ref|YP_005649734.1| - 0.12 10.8 0.0 1.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase SMC_N PF02463.14 gi|385777166|ref|YP_005649734.1| - 0.14 11.4 0.6 8.6 5.5 0.0 2.8 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain cobW PF02492.14 gi|385777166|ref|YP_005649734.1| - 0.15 11.5 0.4 7.7 5.9 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|385777166|ref|YP_005649734.1| - 0.15 11.4 0.1 13 5.2 0.0 3.2 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_21 PF13304.1 gi|385777166|ref|YP_005649734.1| - 0.36 10.7 20.7 0.51 10.2 0.1 4.9 4 2 2 6 6 4 0 AAA domain OrfB_IS605 PF01385.14 gi|385777167|ref|YP_005649735.1| - 6.5e-39 133.6 6.5 1.4e-38 132.5 4.5 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385777167|ref|YP_005649735.1| - 2.7e-28 97.4 0.2 6.7e-28 96.1 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385777167|ref|YP_005649735.1| - 9.5e-09 34.4 1.2 1.4e-08 33.8 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|385777167|ref|YP_005649735.1| - 0.029 13.7 1.1 5.2 6.4 0.0 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding DUF3543 PF12063.3 gi|385777167|ref|YP_005649735.1| - 0.058 12.6 4.1 0.48 9.5 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3543) DZR PF12773.2 gi|385777167|ref|YP_005649735.1| - 0.077 12.8 0.3 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385777167|ref|YP_005649735.1| - 0.095 12.2 1.4 12 5.5 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|385777167|ref|YP_005649735.1| - 0.12 12.5 0.4 0.12 12.5 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|385777167|ref|YP_005649735.1| - 0.13 11.5 2.9 4.5 6.5 3.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain AA_permease PF00324.16 gi|385777168|ref|YP_005649736.1| - 3.4e-99 332.3 48.5 4.2e-99 332.0 33.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|385777168|ref|YP_005649736.1| - 6.4e-14 51.3 54.6 8.4e-14 50.9 37.8 1.1 1 0 0 1 1 1 1 Amino acid permease Aminotran_3 PF00202.16 gi|385777169|ref|YP_005649737.1| - 1.1e-91 307.2 0.0 1.2e-91 307.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III AA_permease_2 PF13520.1 gi|385777170|ref|YP_005649738.1| - 9.8e-58 195.6 74.5 1.2e-57 195.3 51.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385777170|ref|YP_005649738.1| - 0.0047 15.3 62.0 0.016 13.5 43.0 1.8 1 1 0 1 1 1 1 Amino acid permease Metallophos_2 PF12850.2 gi|385777171|ref|YP_005649739.1| - 3.2e-09 36.8 0.0 6.6e-08 32.5 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385777171|ref|YP_005649739.1| - 5.2e-07 29.2 1.7 0.0001 21.7 1.2 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|385777171|ref|YP_005649739.1| - 7.3e-05 22.0 0.1 0.013 14.6 0.0 2.5 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Aminotran_3 PF00202.16 gi|385777172|ref|YP_005649740.1| - 5.8e-83 278.5 0.0 7e-83 278.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Peptidase_M20 PF01546.23 gi|385777173|ref|YP_005649741.1| - 1.2e-26 93.4 0.0 1.4e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385777173|ref|YP_005649741.1| - 3.5e-07 29.9 0.0 8.6e-07 28.6 0.0 1.7 1 1 1 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|385777173|ref|YP_005649741.1| - 0.012 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M28 Tn7_TnsC_Int PF11426.3 gi|385777173|ref|YP_005649741.1| - 0.02 14.5 0.5 0.25 11.0 0.1 2.3 2 0 0 2 2 2 0 Tn7 transposition regulator TnsC MFS_1 PF07690.11 gi|385777175|ref|YP_005649743.1| - 1.9e-45 155.1 28.2 2.9e-45 154.5 19.6 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily OATP PF03137.15 gi|385777175|ref|YP_005649743.1| - 7.8e-05 20.9 9.2 0.0014 16.7 0.5 3.3 2 2 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family Herpes_LMP1 PF05297.6 gi|385777175|ref|YP_005649743.1| - 0.028 13.3 1.7 0.057 12.3 1.2 1.4 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF1469 PF07332.6 gi|385777175|ref|YP_005649743.1| - 0.39 10.4 0.0 0.39 10.4 0.0 3.6 5 0 0 5 5 5 0 Protein of unknown function (DUF1469) DUF1228 PF06779.9 gi|385777175|ref|YP_005649743.1| - 5 7.2 8.5 15 5.6 0.0 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1228) ADH_N PF08240.7 gi|385777176|ref|YP_005649744.1| - 1.4e-22 79.4 0.7 5.3e-22 77.6 0.5 1.9 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ApbA PF02558.11 gi|385777176|ref|YP_005649744.1| - 0.019 14.3 0.1 0.031 13.7 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ADH_zinc_N PF00107.21 gi|385777176|ref|YP_005649744.1| - 0.11 12.0 0.0 0.41 10.2 0.0 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase MFS_1 PF07690.11 gi|385777177|ref|YP_005649745.1| - 1.3e-51 175.3 49.5 1.3e-51 175.3 34.3 2.3 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385777177|ref|YP_005649745.1| - 3e-09 35.9 16.0 3e-09 35.9 11.1 2.9 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|385777177|ref|YP_005649745.1| - 6.4e-06 24.5 11.6 6.4e-06 24.5 8.1 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector DUF2270 PF10028.4 gi|385777177|ref|YP_005649745.1| - 0.15 11.4 1.2 0.39 10.1 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2270) BPD_transp_1 PF00528.17 gi|385777178|ref|YP_005649746.1| - 3.7e-15 55.9 46.5 8.1e-11 41.7 15.9 4.3 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|385777179|ref|YP_005649747.1| - 1.7e-35 122.2 0.0 2.9e-35 121.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385777179|ref|YP_005649747.1| - 5.3e-12 46.3 4.8 1.7e-10 41.3 0.4 2.6 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|385777179|ref|YP_005649747.1| - 7.8e-11 41.6 2.8 1.6e-06 27.4 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|385777179|ref|YP_005649747.1| - 0.00014 21.2 2.7 0.00055 19.2 1.9 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.5 gi|385777179|ref|YP_005649747.1| - 0.00014 21.8 0.0 0.00049 20.0 0.0 1.9 2 0 0 2 2 2 1 TOBE domain AAA_18 PF13238.1 gi|385777179|ref|YP_005649747.1| - 0.00022 21.5 0.2 0.00042 20.6 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|385777179|ref|YP_005649747.1| - 0.00071 19.9 1.0 0.00071 19.9 0.7 2.6 3 1 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|385777179|ref|YP_005649747.1| - 0.002 18.2 0.2 0.0079 16.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|385777179|ref|YP_005649747.1| - 0.0021 17.5 0.6 0.0069 15.8 0.1 1.8 1 1 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|385777179|ref|YP_005649747.1| - 0.0027 18.5 1.4 0.018 15.8 1.0 2.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385777179|ref|YP_005649747.1| - 0.0028 16.8 0.1 0.0052 15.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|385777179|ref|YP_005649747.1| - 0.003 17.0 0.1 0.0071 15.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385777179|ref|YP_005649747.1| - 0.0043 17.0 0.1 0.0089 16.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|385777179|ref|YP_005649747.1| - 0.0049 16.6 0.5 0.0093 15.6 0.1 1.6 2 0 0 2 2 1 1 Archaeal ATPase Miro PF08477.8 gi|385777179|ref|YP_005649747.1| - 0.0055 17.1 0.0 0.012 16.0 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein PIF1 PF05970.9 gi|385777179|ref|YP_005649747.1| - 0.011 14.7 0.2 0.11 11.3 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase AAA_13 PF13166.1 gi|385777179|ref|YP_005649747.1| - 0.014 13.8 0.0 0.18 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|385777179|ref|YP_005649747.1| - 0.016 14.8 0.1 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|385777179|ref|YP_005649747.1| - 0.017 14.8 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain ABC_ATPase PF09818.4 gi|385777179|ref|YP_005649747.1| - 0.017 13.6 0.2 6.5 5.2 0.1 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|385777179|ref|YP_005649747.1| - 0.018 14.9 0.0 0.044 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385777179|ref|YP_005649747.1| - 0.035 13.5 0.1 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|385777179|ref|YP_005649747.1| - 0.058 12.2 0.1 0.12 11.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|385777179|ref|YP_005649747.1| - 0.072 12.6 0.3 0.19 11.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain UPF0079 PF02367.12 gi|385777179|ref|YP_005649747.1| - 0.091 12.3 0.1 0.22 11.1 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|385777179|ref|YP_005649747.1| - 0.12 11.7 0.1 0.24 10.8 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|385777179|ref|YP_005649747.1| - 0.15 11.6 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain SBP_bac_8 PF13416.1 gi|385777180|ref|YP_005649748.1| - 3.4e-16 59.8 0.1 3.4e-16 59.8 0.1 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|385777180|ref|YP_005649748.1| - 6e-13 49.2 0.8 3.2e-12 46.8 0.1 2.4 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|385777180|ref|YP_005649748.1| - 1.5e-05 24.7 0.1 0.00063 19.4 0.0 2.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|385777180|ref|YP_005649748.1| - 0.015 14.5 0.0 0.036 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF1628 PF07790.6 gi|385777180|ref|YP_005649748.1| - 0.027 15.2 3.4 0.056 14.1 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) DUF4261 PF14080.1 gi|385777180|ref|YP_005649748.1| - 0.06 13.1 0.2 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4261) DUF4307 PF14155.1 gi|385777180|ref|YP_005649748.1| - 0.17 11.7 2.5 0.35 10.6 1.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) CxxCxxCC PF03692.10 gi|385777181|ref|YP_005649749.1| - 3.5e-09 37.0 1.5 5.1e-09 36.4 1.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain TPR_11 PF13414.1 gi|385777182|ref|YP_005649750.1| - 2.9e-36 122.9 28.9 3e-12 45.9 0.1 5.1 1 1 4 5 5 5 5 TPR repeat TPR_2 PF07719.12 gi|385777182|ref|YP_005649750.1| - 2.5e-28 95.6 23.1 7.7e-06 25.4 0.0 7.5 7 1 0 7 7 7 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|385777182|ref|YP_005649750.1| - 6.4e-27 92.0 29.2 9.8e-08 31.2 0.4 6.8 7 0 0 7 7 7 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|385777182|ref|YP_005649750.1| - 3.4e-26 91.1 11.2 1.7e-09 37.6 1.1 3.3 2 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.1 gi|385777182|ref|YP_005649750.1| - 1.4e-24 86.2 8.8 9.8e-09 35.4 0.0 4.2 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|385777182|ref|YP_005649750.1| - 9.1e-24 83.5 4.1 1e-06 29.2 0.0 4.5 2 2 4 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|385777182|ref|YP_005649750.1| - 9.8e-23 78.1 26.0 4e-05 23.0 0.1 7.2 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|385777182|ref|YP_005649750.1| - 2.2e-17 61.7 13.6 0.0006 19.8 0.0 7.6 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|385777182|ref|YP_005649750.1| - 4.5e-17 61.7 36.5 3.7e-05 23.5 0.2 5.2 1 1 5 6 6 6 6 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385777182|ref|YP_005649750.1| - 5.7e-17 60.6 0.2 0.00068 20.0 0.0 5.6 4 3 3 7 7 6 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|385777182|ref|YP_005649750.1| - 2.4e-16 59.3 0.0 2.9e-05 23.8 0.0 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|385777182|ref|YP_005649750.1| - 2.1e-12 45.8 12.1 8.9e-05 22.0 0.1 6.3 5 1 2 7 7 6 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|385777182|ref|YP_005649750.1| - 1e-10 40.9 9.7 7.3e-05 21.7 0.1 3.2 2 1 1 3 3 3 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|385777182|ref|YP_005649750.1| - 8.3e-10 38.1 3.4 3.7e-06 26.1 0.7 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|385777182|ref|YP_005649750.1| - 1.1e-08 35.1 1.4 7.7e-06 25.9 0.1 3.1 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|385777182|ref|YP_005649750.1| - 1.7e-08 34.4 0.3 0.00098 19.1 0.0 3.8 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|385777182|ref|YP_005649750.1| - 2.3e-08 33.9 14.9 0.022 15.2 0.2 5.9 7 0 0 7 7 5 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|385777182|ref|YP_005649750.1| - 1.2e-05 25.0 4.3 0.17 11.8 0.1 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|385777182|ref|YP_005649750.1| - 4.8e-05 23.1 19.1 0.038 13.8 0.2 5.4 6 0 0 6 6 6 2 Fis1 C-terminal tetratricopeptide repeat CLTH PF10607.4 gi|385777182|ref|YP_005649750.1| - 0.00096 18.8 5.9 0.61 9.7 0.0 3.1 2 1 1 3 3 3 2 CTLH/CRA C-terminal to LisH motif domain MIT PF04212.13 gi|385777182|ref|YP_005649750.1| - 0.0038 17.0 16.9 0.28 11.0 0.6 6.0 6 1 1 7 7 7 2 MIT (microtubule interacting and transport) domain TPR_3 PF07720.7 gi|385777182|ref|YP_005649750.1| - 0.0097 15.6 24.7 0.032 14.0 2.1 6.3 6 0 0 6 6 6 1 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|385777182|ref|YP_005649750.1| - 0.012 14.8 0.8 32 3.8 0.0 4.5 5 0 0 5 5 5 0 SHNi-TPR Phage_term_smal PF05944.7 gi|385777182|ref|YP_005649750.1| - 0.02 14.5 0.3 0.19 11.4 0.1 2.5 2 1 1 3 3 3 0 Phage small terminase subunit RPN7 PF10602.4 gi|385777182|ref|YP_005649750.1| - 0.04 13.2 14.5 0.29 10.4 1.1 3.2 2 1 1 3 3 3 0 26S proteasome subunit RPN7 HEAT_2 PF13646.1 gi|385777182|ref|YP_005649750.1| - 0.076 13.3 0.0 1.6 9.0 0.0 2.5 2 1 0 2 2 2 0 HEAT repeats Type_III_YscG PF09477.5 gi|385777182|ref|YP_005649750.1| - 0.16 12.0 1.4 0.29 11.2 0.0 2.2 4 0 0 4 4 1 0 Bacterial type II secretion system chaperone protein (type_III_yscG) Foie-gras_1 PF11817.3 gi|385777182|ref|YP_005649750.1| - 0.44 9.9 7.6 1.8 8.0 0.6 3.3 3 1 1 4 4 3 0 Foie gras liver health family 1 GEMIN8 PF15348.1 gi|385777182|ref|YP_005649750.1| - 0.86 9.6 4.3 0.87 9.5 2.2 1.7 1 1 0 1 1 1 0 Gemini of Cajal bodies-associated protein 8 YfdX PF10938.3 gi|385777182|ref|YP_005649750.1| - 1.3 8.6 4.6 42 3.7 0.0 3.8 5 1 0 5 5 4 0 YfdX protein AIRS_C PF02769.17 gi|385777183|ref|YP_005649751.1| - 8.5e-20 71.3 0.1 1.5e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|385777183|ref|YP_005649751.1| - 3.6e-08 33.5 0.0 6.3e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DoxX PF07681.7 gi|385777184|ref|YP_005649752.1| - 6.2e-12 45.7 4.4 6.2e-12 45.7 3.1 1.6 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.1 gi|385777184|ref|YP_005649752.1| - 0.00012 21.9 5.5 0.00025 20.9 3.5 1.8 1 1 1 2 2 2 1 DoxX-like family DoxD PF04173.8 gi|385777184|ref|YP_005649752.1| - 0.023 14.4 1.4 0.032 13.9 1.0 1.3 1 0 0 1 1 1 0 TQO small subunit DoxD Herpes_BMRF2 PF04633.7 gi|385777184|ref|YP_005649752.1| - 0.09 11.7 2.0 0.12 11.3 1.4 1.1 1 0 0 1 1 1 0 Herpesvirus BMRF2 protein CaKB PF03185.10 gi|385777184|ref|YP_005649752.1| - 0.16 11.2 1.1 0.26 10.6 0.7 1.3 1 0 0 1 1 1 0 Calcium-activated potassium channel, beta subunit DUF417 PF04224.7 gi|385777184|ref|YP_005649752.1| - 0.72 9.2 5.9 0.88 8.9 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF417 PNP_UDP_1 PF01048.15 gi|385777185|ref|YP_005649753.1| - 1.3e-38 132.2 0.0 1.5e-38 132.0 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MFS_1_like PF12832.2 gi|385777185|ref|YP_005649753.1| - 0.02 14.6 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 MFS_1 like family SGL PF08450.7 gi|385777186|ref|YP_005649754.1| - 4.7e-83 278.3 0.1 5.4e-83 278.1 0.1 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region Arylesterase PF01731.15 gi|385777186|ref|YP_005649754.1| - 6.6e-05 22.8 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 Arylesterase Reg_prop PF07494.6 gi|385777186|ref|YP_005649754.1| - 0.012 15.5 1.5 2.2 8.5 0.1 3.4 3 0 0 3 3 3 0 Two component regulator propeller Str_synth PF03088.11 gi|385777186|ref|YP_005649754.1| - 0.029 14.3 0.0 0.062 13.3 0.0 1.5 1 0 0 1 1 1 0 Strictosidine synthase NHL PF01436.16 gi|385777186|ref|YP_005649754.1| - 0.032 14.2 0.0 0.35 10.8 0.0 2.9 2 0 0 2 2 2 0 NHL repeat Ldl_recept_b PF00058.12 gi|385777186|ref|YP_005649754.1| - 0.079 13.2 0.0 0.87 9.9 0.0 2.3 2 0 0 2 2 2 0 Low-density lipoprotein receptor repeat class B MFS_1 PF07690.11 gi|385777187|ref|YP_005649755.1| - 1.2e-39 136.0 62.4 1.1e-25 90.0 17.8 3.1 1 1 1 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385777187|ref|YP_005649755.1| - 2.9e-07 29.4 39.6 3.3e-05 22.6 11.7 2.8 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|385777187|ref|YP_005649755.1| - 0.00015 20.0 7.6 0.00057 18.1 1.5 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector DUF2583 PF10762.4 gi|385777187|ref|YP_005649755.1| - 0.33 11.1 12.2 0.057 13.5 0.9 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) DUF3671 PF12420.3 gi|385777189|ref|YP_005649757.1| - 0.0091 15.9 0.1 0.01 15.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function SoxE PF06525.6 gi|385777189|ref|YP_005649757.1| - 0.048 12.9 2.9 0.057 12.6 2.0 1.2 1 0 0 1 1 1 0 Sulfocyanin (SoxE) TarH PF02203.10 gi|385777189|ref|YP_005649757.1| - 0.11 12.3 0.6 0.12 12.2 0.4 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue Sporozoite_P67 PF05642.6 gi|385777189|ref|YP_005649757.1| - 0.16 9.7 2.1 0.16 9.8 1.5 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF4097 PF13349.1 gi|385777189|ref|YP_005649757.1| - 0.39 10.2 3.1 0.47 9.9 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) MFS_1 PF07690.11 gi|385777191|ref|YP_005649759.1| - 5e-20 71.5 35.2 2.3e-11 43.0 10.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385777191|ref|YP_005649759.1| - 8e-05 21.3 8.3 8e-05 21.3 5.8 3.1 1 1 1 3 3 3 2 Sugar (and other) transporter TENA_THI-4 PF03070.11 gi|385777192|ref|YP_005649760.1| - 1.7e-38 132.5 0.3 2.3e-38 132.0 0.2 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family zf-C2H2 PF00096.21 gi|385777192|ref|YP_005649760.1| - 0.00092 19.4 0.0 0.0022 18.2 0.0 1.7 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|385777192|ref|YP_005649760.1| - 0.013 15.8 0.0 0.031 14.5 0.0 1.6 1 0 0 1 1 1 0 C2H2-type zinc finger zf-met PF12874.2 gi|385777192|ref|YP_005649760.1| - 0.032 14.4 0.0 0.067 13.4 0.0 1.5 1 0 0 1 1 1 0 Zinc-finger of C2H2 type Acetyltransf_4 PF13420.1 gi|385777192|ref|YP_005649760.1| - 0.045 13.7 0.0 0.98 9.3 0.0 2.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Haem_oxygenas_2 PF14518.1 gi|385777192|ref|YP_005649760.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Iron-containing redox enzyme zf-C2H2_2 PF12756.2 gi|385777192|ref|YP_005649760.1| - 0.065 13.3 0.1 0.85 9.7 0.0 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger (2 copies) FeoA PF04023.9 gi|385777192|ref|YP_005649760.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 FeoA domain Ta0938 PF11494.3 gi|385777193|ref|YP_005649761.1| - 4.6e-62 206.7 6.3 5.1e-62 206.5 4.4 1.0 1 0 0 1 1 1 1 Ta0938 AGT PF11440.3 gi|385777193|ref|YP_005649761.1| - 0.021 13.6 0.0 0.026 13.4 0.0 1.1 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase YHS PF04945.8 gi|385777193|ref|YP_005649761.1| - 0.14 12.0 0.8 0.14 12.0 0.5 1.8 2 0 0 2 2 2 0 YHS domain zf-H2C2_2 PF13465.1 gi|385777193|ref|YP_005649761.1| - 0.33 11.3 0.2 0.33 11.3 0.1 1.7 2 0 0 2 2 2 0 Zinc-finger double domain DUF35_N PF12172.3 gi|385777194|ref|YP_005649762.1| - 3.7e-06 26.6 1.1 1.8e-05 24.5 0.5 2.0 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|385777194|ref|YP_005649762.1| - 0.038 13.3 3.0 3.9 6.8 0.3 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|385777194|ref|YP_005649762.1| - 0.039 13.6 0.5 0.055 13.1 0.1 1.4 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|385777194|ref|YP_005649762.1| - 0.048 13.1 0.2 0.048 13.1 0.2 2.4 3 0 0 3 3 3 0 A2L zinc ribbon domain FdhE PF04216.7 gi|385777194|ref|YP_005649762.1| - 0.17 11.5 0.8 0.2 11.3 0.6 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_5 PF13719.1 gi|385777194|ref|YP_005649762.1| - 0.19 11.3 4.2 16 5.1 2.9 2.5 1 1 1 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|385777194|ref|YP_005649762.1| - 0.24 11.7 3.5 0.74 10.1 2.4 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C3HC4_3 PF13920.1 gi|385777194|ref|YP_005649762.1| - 0.24 11.1 4.0 0.11 12.2 0.9 1.7 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.1 gi|385777194|ref|YP_005649762.1| - 0.26 10.9 4.5 21 4.9 3.1 2.5 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|385777194|ref|YP_005649762.1| - 0.27 10.9 4.7 2 8.1 0.6 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|385777194|ref|YP_005649762.1| - 0.31 10.9 3.7 0.17 11.7 0.6 1.9 2 0 0 2 2 2 0 Double zinc ribbon UPF0547 PF10571.4 gi|385777194|ref|YP_005649762.1| - 0.5 10.1 4.9 2.5 7.8 0.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2082 PF09855.4 gi|385777194|ref|YP_005649762.1| - 0.53 10.1 3.7 13 5.6 0.5 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.5 gi|385777194|ref|YP_005649762.1| - 0.72 9.8 4.5 7.3 6.6 3.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|385777194|ref|YP_005649762.1| - 1.9 8.9 6.5 3.6 8.1 1.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|385777194|ref|YP_005649762.1| - 2.2 7.5 5.1 3.6 6.9 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385777194|ref|YP_005649762.1| - 3.5 7.4 7.0 1.5 8.6 0.5 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C3HC4_2 PF13923.1 gi|385777194|ref|YP_005649762.1| - 5.2 7.1 6.0 2.5 8.1 2.3 1.9 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Thiolase_C PF02803.13 gi|385777195|ref|YP_005649763.1| - 3e-05 23.4 0.5 6.4e-05 22.3 0.1 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|385777195|ref|YP_005649763.1| - 0.00015 20.8 0.2 0.0021 17.1 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|385777195|ref|YP_005649763.1| - 0.0018 17.8 0.3 0.079 12.6 0.1 2.7 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF2194 PF09960.4 gi|385777195|ref|YP_005649763.1| - 0.011 13.8 0.1 0.016 13.2 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2194) OrfB_IS605 PF01385.14 gi|385777196|ref|YP_005649764.1| - 2.5e-27 95.7 6.7 3.2e-27 95.4 4.7 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385777196|ref|YP_005649764.1| - 4.6e-24 83.8 0.1 9.4e-24 82.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385777196|ref|YP_005649764.1| - 0.023 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385777196|ref|YP_005649764.1| - 0.027 14.0 0.4 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385777196|ref|YP_005649764.1| - 0.085 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385777196|ref|YP_005649764.1| - 0.12 11.9 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385777196|ref|YP_005649764.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385777196|ref|YP_005649764.1| - 0.29 10.9 0.8 9 6.1 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385777196|ref|YP_005649764.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385777196|ref|YP_005649764.1| - 4.7 7.1 5.1 4.6 7.1 0.3 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 GYD PF08734.6 gi|385777197|ref|YP_005649765.1| - 4.4e-17 61.5 0.2 5.5e-17 61.2 0.1 1.0 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.16 gi|385777197|ref|YP_005649765.1| - 0.00049 19.7 0.3 0.00086 18.9 0.1 1.4 1 1 0 1 1 1 1 AsnC family Peptidase_M48 PF01435.13 gi|385777198|ref|YP_005649766.1| - 4.7e-21 75.3 0.0 1e-20 74.3 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|385777198|ref|YP_005649766.1| - 0.0045 16.0 1.1 0.0045 16.0 0.7 2.2 1 1 1 2 2 2 1 BlaR1 peptidase M56 YbhQ PF11076.3 gi|385777198|ref|YP_005649766.1| - 0.13 11.8 8.1 0.47 10.0 0.3 2.6 2 1 0 2 2 2 0 Putative inner membrane protein YbhQ Pex24p PF06398.6 gi|385777198|ref|YP_005649766.1| - 2.3 6.9 10.3 0.06 12.1 0.9 2.2 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin Peptidase_S9 PF00326.16 gi|385777199|ref|YP_005649767.1| - 3.1e-49 167.0 0.0 4.3e-49 166.6 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|385777199|ref|YP_005649767.1| - 2.2e-10 40.4 0.0 3.5e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|385777199|ref|YP_005649767.1| - 8.8e-08 31.8 0.3 8.6e-05 22.0 0.4 2.3 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|385777199|ref|YP_005649767.1| - 1.4e-07 31.6 0.0 5e-06 26.5 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|385777199|ref|YP_005649767.1| - 9.1e-06 25.1 0.0 0.00014 21.1 0.0 2.0 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|385777199|ref|YP_005649767.1| - 0.00071 19.0 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.11 gi|385777199|ref|YP_005649767.1| - 0.0014 18.1 0.1 0.0055 16.1 0.0 1.9 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.15 gi|385777199|ref|YP_005649767.1| - 0.0066 16.0 0.0 0.031 13.8 0.0 1.8 1 1 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S28 PF05577.7 gi|385777199|ref|YP_005649767.1| - 0.045 12.3 0.1 0.11 11.0 0.0 1.6 2 0 0 2 2 2 0 Serine carboxypeptidase S28 CBS PF00571.23 gi|385777200|ref|YP_005649768.1| - 8.2e-24 83.1 2.6 3.2e-11 42.8 0.3 2.1 2 0 0 2 2 2 2 CBS domain ABC2_membrane_3 PF12698.2 gi|385777200|ref|YP_005649768.1| - 0.062 12.3 0.0 0.063 12.3 0.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein SporV_AA PF12164.3 gi|385777200|ref|YP_005649768.1| - 0.085 12.8 0.9 0.15 12.0 0.6 1.5 1 0 0 1 1 1 0 Stage V sporulation protein AA Rad50_zn_hook PF04423.9 gi|385777201|ref|YP_005649769.1| - 0.0032 16.8 0.0 0.0032 16.8 0.0 2.3 3 0 0 3 3 3 1 Rad50 zinc hook motif DUF1610 PF07754.6 gi|385777201|ref|YP_005649769.1| - 0.026 14.6 0.5 0.063 13.4 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) DUF2479 PF10651.4 gi|385777201|ref|YP_005649769.1| - 0.041 13.4 0.1 0.049 13.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2479) FeThRed_B PF02943.10 gi|385777201|ref|YP_005649769.1| - 0.13 12.0 0.1 0.22 11.2 0.1 1.4 1 0 0 1 1 1 0 Ferredoxin thioredoxin reductase catalytic beta chain DUF2121 PF09894.4 gi|385777201|ref|YP_005649769.1| - 0.14 11.4 1.9 0.17 11.1 1.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2121) Pyr_redox_2 PF07992.9 gi|385777202|ref|YP_005649770.1| - 2.2e-38 132.1 5.4 4.6e-36 124.5 3.7 3.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|385777202|ref|YP_005649770.1| - 8e-30 103.1 0.2 1.5e-29 102.2 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|385777202|ref|YP_005649770.1| - 4.4e-13 49.4 1.8 5.9e-13 49.0 0.0 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385777202|ref|YP_005649770.1| - 4.8e-11 43.1 0.0 8.3e-06 25.9 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|385777202|ref|YP_005649770.1| - 1.7e-10 40.3 10.7 7.4e-06 25.0 1.8 4.0 2 2 1 3 3 3 3 Glucose inhibited division protein A HI0933_like PF03486.9 gi|385777202|ref|YP_005649770.1| - 4.4e-06 25.4 1.0 0.0094 14.4 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|385777202|ref|YP_005649770.1| - 0.00058 18.8 4.0 0.39 9.4 0.0 2.5 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|385777202|ref|YP_005649770.1| - 0.00061 18.7 2.5 0.03 13.2 0.0 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|385777202|ref|YP_005649770.1| - 0.0038 16.3 0.0 0.013 14.5 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|385777202|ref|YP_005649770.1| - 0.066 12.9 0.7 1.1 8.9 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding zf-FCS PF06467.9 gi|385777203|ref|YP_005649771.1| - 6.7e-08 32.0 3.3 1.2e-07 31.2 2.3 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif ATPase-cat_bd PF12156.3 gi|385777203|ref|YP_005649771.1| - 0.00013 22.3 4.9 0.00013 22.3 3.4 1.7 1 1 1 2 2 2 1 Putative metal-binding domain of cation transport ATPase Ta0938 PF11494.3 gi|385777203|ref|YP_005649771.1| - 0.00029 20.9 0.8 0.0003 20.8 0.5 1.1 1 0 0 1 1 1 1 Ta0938 YHS PF04945.8 gi|385777203|ref|YP_005649771.1| - 0.0012 18.6 1.7 0.0017 18.1 1.2 1.2 1 0 0 1 1 1 1 YHS domain zinc_ribbon_2 PF13240.1 gi|385777203|ref|YP_005649771.1| - 0.0012 18.2 3.3 0.0033 16.8 2.3 1.8 1 1 0 1 1 1 1 zinc-ribbon domain Arc_trans_TRASH PF08394.5 gi|385777203|ref|YP_005649771.1| - 0.0032 17.5 4.3 0.0056 16.8 3.0 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain Zn_ribbon_recom PF13408.1 gi|385777203|ref|YP_005649771.1| - 0.017 15.4 4.4 0.019 15.2 3.1 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|385777203|ref|YP_005649771.1| - 0.022 13.9 0.2 0.022 13.9 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain NinF PF05810.7 gi|385777203|ref|YP_005649771.1| - 0.036 13.8 6.3 0.92 9.3 4.3 2.2 1 1 0 1 1 1 0 NinF protein Zn_ribbon_2 PF12674.2 gi|385777203|ref|YP_005649771.1| - 0.056 13.7 2.5 0.073 13.4 1.7 1.2 1 0 0 1 1 1 0 Putative zinc ribbon domain DUF3781 PF12636.2 gi|385777203|ref|YP_005649771.1| - 0.057 13.3 0.3 0.071 13.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3781) zf-H2C2_2 PF13465.1 gi|385777203|ref|YP_005649771.1| - 0.059 13.6 2.6 2.4 8.6 0.7 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-FPG_IleRS PF06827.9 gi|385777203|ref|YP_005649771.1| - 0.086 12.5 5.4 1 9.0 3.3 2.4 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF3268 PF11672.3 gi|385777203|ref|YP_005649771.1| - 0.11 12.6 1.5 0.13 12.3 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) DUF4193 PF13834.1 gi|385777203|ref|YP_005649771.1| - 0.16 12.1 2.7 0.27 11.4 1.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4193) DNA_RNApol_7kD PF03604.8 gi|385777203|ref|YP_005649771.1| - 0.18 11.3 3.7 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|385777203|ref|YP_005649771.1| - 0.24 11.2 6.7 0.73 9.7 4.6 1.8 1 1 0 1 1 1 0 Double zinc ribbon RNHCP PF12647.2 gi|385777203|ref|YP_005649771.1| - 0.77 9.6 5.5 1.1 9.1 3.8 1.3 1 0 0 1 1 1 0 RNHCP domain DRP PF06044.7 gi|385777203|ref|YP_005649771.1| - 0.91 8.4 3.5 0.92 8.4 2.5 1.1 1 0 0 1 1 1 0 Dam-replacing family HypA PF01155.14 gi|385777203|ref|YP_005649771.1| - 0.96 9.1 7.8 1 9.1 2.7 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family LIM PF00412.17 gi|385777203|ref|YP_005649771.1| - 1.1 9.3 10.1 13 5.9 6.9 2.0 1 1 0 1 1 1 0 LIM domain Zn-ribbon_8 PF09723.5 gi|385777203|ref|YP_005649771.1| - 2.9 7.9 0.0 2.9 7.9 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|385777203|ref|YP_005649771.1| - 5.7 6.6 9.4 24 4.6 6.5 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Evr1_Alr PF04777.8 gi|385777203|ref|YP_005649771.1| - 7.9 6.4 7.0 3.6 7.5 1.4 2.1 1 1 1 2 2 2 0 Erv1 / Alr family HTH_5 PF01022.15 gi|385777204|ref|YP_005649772.1| - 4.7e-17 61.3 1.3 5.6e-17 61.1 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|385777204|ref|YP_005649772.1| - 1.7e-09 37.3 0.0 3.2e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385777204|ref|YP_005649772.1| - 8.9e-08 31.7 0.0 5.3e-07 29.2 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|385777204|ref|YP_005649772.1| - 2.7e-06 27.3 0.0 5.1e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|385777204|ref|YP_005649772.1| - 3.7e-05 23.0 0.1 0.00048 19.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.6 gi|385777204|ref|YP_005649772.1| - 8.4e-05 22.3 0.2 0.0033 17.2 0.1 2.2 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.12 gi|385777204|ref|YP_005649772.1| - 0.00027 20.4 0.1 0.00051 19.5 0.0 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.15 gi|385777204|ref|YP_005649772.1| - 0.00072 19.6 0.1 0.0079 16.2 0.0 1.9 1 1 1 2 2 2 1 Transcriptional regulator KorB PF08535.5 gi|385777204|ref|YP_005649772.1| - 0.0036 17.4 0.0 0.0054 16.8 0.0 1.3 1 0 0 1 1 1 1 KorB domain MarR_2 PF12802.2 gi|385777204|ref|YP_005649772.1| - 0.01 15.5 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|385777204|ref|YP_005649772.1| - 0.025 14.2 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|385777204|ref|YP_005649772.1| - 0.039 14.0 0.0 0.045 13.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.7 gi|385777204|ref|YP_005649772.1| - 0.04 13.5 0.0 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.1 gi|385777204|ref|YP_005649772.1| - 0.043 13.3 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LAGLIDADG_1 PF00961.14 gi|385777204|ref|YP_005649772.1| - 0.063 13.8 0.1 0.075 13.5 0.0 1.2 1 0 0 1 1 1 0 LAGLIDADG endonuclease Phage_rep_org_N PF09681.5 gi|385777204|ref|YP_005649772.1| - 0.079 12.5 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) LexA_DNA_bind PF01726.11 gi|385777204|ref|YP_005649772.1| - 0.14 11.7 0.0 0.68 9.5 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain Yippee-Mis18 PF03226.9 gi|385777205|ref|YP_005649773.1| - 0.076 13.0 0.2 0.093 12.7 0.1 1.1 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF504 PF04457.7 gi|385777206|ref|YP_005649774.1| - 9.9e-18 64.0 0.1 1.5e-17 63.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF504) zf-ribbon_3 PF13248.1 gi|385777207|ref|YP_005649775.1| - 1.7e-08 33.3 3.6 2.5e-08 32.8 2.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385777207|ref|YP_005649775.1| - 8.1e-07 28.3 2.5 1.1e-06 27.8 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|385777207|ref|YP_005649775.1| - 2.1e-05 24.2 1.0 3e-05 23.7 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|385777207|ref|YP_005649775.1| - 0.0034 16.4 0.3 0.0048 15.9 0.2 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others UPF0547 PF10571.4 gi|385777207|ref|YP_005649775.1| - 0.038 13.6 4.1 0.093 12.4 2.8 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|385777207|ref|YP_005649775.1| - 0.052 13.2 2.1 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal MerE PF05052.7 gi|385777207|ref|YP_005649775.1| - 0.22 11.5 4.3 0.81 9.6 0.2 2.3 2 0 0 2 2 2 0 MerE protein DUF4191 PF13829.1 gi|385777207|ref|YP_005649775.1| - 0.25 10.4 11.8 1.2 8.2 1.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) Rax2 PF12768.2 gi|385777207|ref|YP_005649775.1| - 4 6.5 5.8 1.5 7.9 2.1 1.6 1 1 1 2 2 2 0 Cortical protein marker for cell polarity NfeD PF01957.13 gi|385777207|ref|YP_005649775.1| - 9.6 6.3 23.1 2.8 8.0 4.3 2.3 2 1 0 2 2 2 0 NfeD-like C-terminal, partner-binding T_Ag_DNA_bind PF02217.11 gi|385777208|ref|YP_005649776.1| - 0.0088 16.4 0.7 0.0088 16.4 0.5 1.7 2 0 0 2 2 2 1 Origin of replication binding protein Tmpp129 PF10272.4 gi|385777208|ref|YP_005649776.1| - 0.22 10.1 6.1 0.25 10.0 4.2 1.1 1 0 0 1 1 1 0 Putative transmembrane protein precursor WH1 PF00568.18 gi|385777208|ref|YP_005649776.1| - 0.27 10.9 2.5 0.32 10.7 1.2 1.6 1 1 0 1 1 1 0 WH1 domain DUF1628 PF07790.6 gi|385777208|ref|YP_005649776.1| - 3.2 8.5 10.1 0.99 10.1 4.9 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) DPCD PF14913.1 gi|385777208|ref|YP_005649776.1| - 4.4 6.3 7.6 15 4.6 5.2 1.9 1 1 0 1 1 1 0 DPCD protein family DUF4064 PF13273.1 gi|385777209|ref|YP_005649777.1| - 0.66 10.1 6.6 1.2 9.3 4.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) Cu-oxidase PF00394.17 gi|385777210|ref|YP_005649778.1| - 0.00046 20.1 0.9 0.00068 19.5 0.6 1.2 1 0 0 1 1 1 1 Multicopper oxidase Cadherin-like PF12733.2 gi|385777210|ref|YP_005649778.1| - 0.01 16.1 2.0 0.016 15.5 1.4 1.2 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain GPI-anchored PF10342.4 gi|385777210|ref|YP_005649778.1| - 0.037 14.4 2.9 0.056 13.9 2.0 1.2 1 0 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF2393 PF09624.5 gi|385777210|ref|YP_005649778.1| - 0.041 13.4 3.8 0.07 12.6 2.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2393) FGGY_C PF02782.11 gi|385777210|ref|YP_005649778.1| - 0.052 13.1 0.0 0.065 12.8 0.0 1.1 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Sigma_reg_N PF13800.1 gi|385777210|ref|YP_005649778.1| - 0.4 10.7 3.0 0.24 11.4 0.5 1.8 2 0 0 2 2 2 0 Sigma factor regulator N-terminal TRAP_beta PF05753.9 gi|385777210|ref|YP_005649778.1| - 2.2 7.4 4.4 8.8 5.4 2.9 2.0 1 1 0 1 1 1 0 Translocon-associated protein beta (TRAPB) T2SE PF00437.15 gi|385777211|ref|YP_005649779.1| - 8.9e-40 136.2 0.0 1.3e-39 135.7 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|385777211|ref|YP_005649779.1| - 0.00032 20.1 0.1 0.00065 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|385777211|ref|YP_005649779.1| - 0.0014 18.9 0.0 0.0065 16.7 0.0 2.1 3 0 0 3 3 2 1 ABC transporter AAA_22 PF13401.1 gi|385777211|ref|YP_005649779.1| - 0.0022 18.1 0.0 0.0053 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|385777211|ref|YP_005649779.1| - 0.0038 17.2 3.1 0.0038 17.2 2.1 2.9 2 2 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385777211|ref|YP_005649779.1| - 0.017 14.6 0.0 0.045 13.1 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|385777211|ref|YP_005649779.1| - 0.025 14.0 0.0 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|385777211|ref|YP_005649779.1| - 0.029 14.6 0.1 0.21 11.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|385777211|ref|YP_005649779.1| - 0.03 15.1 0.1 0.2 12.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385777211|ref|YP_005649779.1| - 0.031 14.1 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|385777211|ref|YP_005649779.1| - 0.048 12.7 0.0 0.15 11.1 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin DUF3987 PF13148.1 gi|385777211|ref|YP_005649779.1| - 0.057 11.9 0.0 0.087 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) cobW PF02492.14 gi|385777211|ref|YP_005649779.1| - 0.069 12.5 1.0 0.12 11.7 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|385777211|ref|YP_005649779.1| - 0.073 13.0 0.0 0.21 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|385777211|ref|YP_005649779.1| - 0.077 12.2 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|385777211|ref|YP_005649779.1| - 0.11 12.2 0.0 1 9.0 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|385777211|ref|YP_005649779.1| - 0.17 11.3 0.2 0.57 9.5 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|385777211|ref|YP_005649779.1| - 0.66 10.2 9.7 0.075 13.3 2.7 2.4 2 1 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|385777212|ref|YP_005649780.1| - 1.2e-13 50.9 12.2 3e-08 33.6 0.1 4.5 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F 7TM-7TMR_HD PF07698.6 gi|385777214|ref|YP_005649782.1| - 1 8.7 37.4 0.16 11.4 17.3 2.1 2 0 0 2 2 2 0 7TM receptor with intracellular HD hydrolase Rieske PF00355.21 gi|385777215|ref|YP_005649783.1| - 2.2e-07 30.3 0.0 2.8e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|385777215|ref|YP_005649783.1| - 0.0014 18.3 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain QueC PF06508.8 gi|385777216|ref|YP_005649784.1| - 4.9e-25 88.0 0.1 1.2e-23 83.5 0.1 2.0 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|385777216|ref|YP_005649784.1| - 0.00043 19.8 0.0 0.00073 19.0 0.0 1.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|385777216|ref|YP_005649784.1| - 0.0026 17.3 0.0 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase OppC_N PF12911.2 gi|385777217|ref|YP_005649785.1| - 0.099 12.0 3.7 0.056 12.8 0.8 2.0 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C PaREP1 PF05942.6 gi|385777218|ref|YP_005649786.1| - 1.1e-31 109.0 3.0 1.3e-31 108.8 2.1 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|385777218|ref|YP_005649786.1| - 0.00022 21.0 3.3 0.00061 19.6 2.3 1.9 1 1 0 1 1 1 1 HEPN domain DUF357 PF04010.8 gi|385777218|ref|YP_005649786.1| - 0.00028 20.5 1.4 0.0045 16.6 0.0 2.5 2 1 1 3 3 3 1 Protein of unknown function (DUF357) TPR_11 PF13414.1 gi|385777218|ref|YP_005649786.1| - 0.11 12.2 1.0 0.18 11.5 0.3 1.7 2 0 0 2 2 2 0 TPR repeat PaREP1 PF05942.6 gi|385777219|ref|YP_005649787.1| - 1.5e-28 98.9 2.1 1.9e-28 98.6 1.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|385777219|ref|YP_005649787.1| - 7.5e-05 22.3 1.7 0.0066 16.1 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF357) HEPN PF05168.9 gi|385777219|ref|YP_005649787.1| - 0.0015 18.4 3.9 0.0062 16.4 2.7 2.1 1 1 0 1 1 1 1 HEPN domain DUF2312 PF10073.4 gi|385777219|ref|YP_005649787.1| - 0.0048 16.2 2.2 0.015 14.6 0.1 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2312) TPR_11 PF13414.1 gi|385777219|ref|YP_005649787.1| - 0.0075 15.8 0.9 0.016 14.8 0.6 1.6 1 0 0 1 1 1 1 TPR repeat ComA PF02679.10 gi|385777219|ref|YP_005649787.1| - 0.05 12.6 0.5 0.059 12.3 0.3 1.2 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) DDE_Tnp_IS240 PF13610.1 gi|385777220|ref|YP_005649788.1| - 0.00016 21.6 0.6 0.00024 21.1 0.4 1.3 1 0 0 1 1 1 1 DDE domain UPF0126 PF03458.8 gi|385777221|ref|YP_005649789.1| - 0.024 14.2 0.2 0.098 12.2 0.1 1.8 1 1 1 2 2 2 0 UPF0126 domain Peptidase_M1 PF01433.15 gi|385777222|ref|YP_005649790.1| - 3.7e-106 355.5 0.0 5.7e-106 354.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M1 ERAP1_C PF11838.3 gi|385777222|ref|YP_005649790.1| - 2e-25 89.7 0.7 6.1e-25 88.1 0.0 1.9 2 0 0 2 2 2 1 ERAP1-like C-terminal domain Peptidase_MA_2 PF13485.1 gi|385777222|ref|YP_005649790.1| - 6.8e-19 68.1 2.1 8.8e-19 67.8 0.6 1.7 2 0 0 2 2 2 1 Peptidase MA superfamily DUF1413 PF07205.6 gi|385777222|ref|YP_005649790.1| - 0.014 14.8 0.3 0.5 9.9 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1413) DUF608 PF04685.8 gi|385777223|ref|YP_005649791.1| - 2.2e-87 293.1 0.5 2.9e-87 292.7 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|385777223|ref|YP_005649791.1| - 8.8e-51 172.8 0.0 1.6e-50 171.9 0.0 1.4 2 0 0 2 2 2 1 beta-Glucocerebrosidase 2 N terminal Bac_rhamnosid PF05592.6 gi|385777223|ref|YP_005649791.1| - 0.00055 18.2 0.2 0.00082 17.7 0.1 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Aldolase_2 PF10120.4 gi|385777223|ref|YP_005649791.1| - 0.1 12.0 0.0 0.31 10.3 0.0 1.8 2 0 0 2 2 2 0 Putative aldolase Amidohydro_1 PF01979.15 gi|385777224|ref|YP_005649792.1| - 3.6e-17 63.0 0.4 1.9e-16 60.6 0.3 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|385777224|ref|YP_005649792.1| - 4e-11 42.5 0.2 8.1e-11 41.5 0.2 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|385777224|ref|YP_005649792.1| - 6.6e-11 42.7 0.0 3e-06 27.4 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|385777224|ref|YP_005649792.1| - 3.9e-07 29.6 0.0 0.005 16.1 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family ABC_tran PF00005.22 gi|385777225|ref|YP_005649793.1| - 2e-30 105.8 0.0 2.7e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385777225|ref|YP_005649793.1| - 1.3e-15 57.4 0.0 2.5e-15 56.5 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385777225|ref|YP_005649793.1| - 3.5e-08 33.7 0.7 0.00043 20.3 0.3 2.3 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|385777225|ref|YP_005649793.1| - 0.00031 20.8 1.0 0.0044 17.1 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385777225|ref|YP_005649793.1| - 0.0016 18.4 0.0 0.0027 17.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|385777225|ref|YP_005649793.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|385777225|ref|YP_005649793.1| - 0.028 13.6 0.1 0.047 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|385777225|ref|YP_005649793.1| - 0.057 11.8 0.3 2.2 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain PEPCK_ATP PF01293.15 gi|385777225|ref|YP_005649793.1| - 0.072 11.5 0.0 0.098 11.1 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_29 PF13555.1 gi|385777225|ref|YP_005649793.1| - 0.098 12.1 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|385777226|ref|YP_005649794.1| - 1.3e-28 99.9 0.0 2e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385777226|ref|YP_005649794.1| - 6.3e-15 55.2 0.0 1.1e-14 54.5 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385777226|ref|YP_005649794.1| - 1e-14 55.1 3.6 8.3e-10 39.0 0.2 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385777226|ref|YP_005649794.1| - 9.6e-08 31.5 2.2 0.0003 20.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385777226|ref|YP_005649794.1| - 1.4e-07 30.8 1.3 0.00089 18.4 0.3 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|385777226|ref|YP_005649794.1| - 1.4e-06 27.7 0.1 2.5e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385777226|ref|YP_005649794.1| - 5.9e-05 23.1 0.0 9.5e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|385777226|ref|YP_005649794.1| - 0.0002 20.9 0.0 0.0026 17.2 0.0 2.2 1 1 0 1 1 1 1 AAA-like domain MMR_HSR1 PF01926.18 gi|385777226|ref|YP_005649794.1| - 0.00025 20.9 0.1 0.00062 19.6 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|385777226|ref|YP_005649794.1| - 0.00034 20.7 0.2 0.0026 17.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385777226|ref|YP_005649794.1| - 0.00093 18.4 0.1 0.0016 17.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|385777226|ref|YP_005649794.1| - 0.0021 18.3 0.0 0.0049 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|385777226|ref|YP_005649794.1| - 0.0027 16.5 0.1 0.0043 15.8 0.1 1.2 1 0 0 1 1 1 1 ArgK protein ABC_ATPase PF09818.4 gi|385777226|ref|YP_005649794.1| - 0.0035 15.9 0.8 1.2 7.6 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class MobB PF03205.9 gi|385777226|ref|YP_005649794.1| - 0.006 16.2 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|385777226|ref|YP_005649794.1| - 0.0099 15.3 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF87 PF01935.12 gi|385777226|ref|YP_005649794.1| - 0.017 14.9 0.2 0.055 13.2 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|385777226|ref|YP_005649794.1| - 0.021 15.6 0.0 0.046 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|385777226|ref|YP_005649794.1| - 0.029 13.2 0.0 0.046 12.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IIGP PF05049.8 gi|385777226|ref|YP_005649794.1| - 0.03 13.1 0.1 0.051 12.3 0.1 1.3 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) NACHT PF05729.7 gi|385777226|ref|YP_005649794.1| - 0.03 13.9 0.0 0.085 12.5 0.0 1.8 2 0 0 2 2 1 0 NACHT domain AAA_19 PF13245.1 gi|385777226|ref|YP_005649794.1| - 0.031 14.0 0.1 0.069 12.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|385777226|ref|YP_005649794.1| - 0.037 14.3 0.0 0.097 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|385777226|ref|YP_005649794.1| - 0.038 13.8 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 Dynamin family PIF1 PF05970.9 gi|385777226|ref|YP_005649794.1| - 0.042 12.8 0.2 0.09 11.7 0.0 1.6 2 0 0 2 2 2 0 PIF1-like helicase NTPase_1 PF03266.10 gi|385777226|ref|YP_005649794.1| - 0.042 13.5 0.1 0.095 12.3 0.1 1.6 1 0 0 1 1 1 0 NTPase T2SE PF00437.15 gi|385777226|ref|YP_005649794.1| - 0.045 12.6 0.0 0.086 11.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|385777226|ref|YP_005649794.1| - 0.056 13.1 0.1 0.11 12.1 0.1 1.7 1 1 0 1 1 1 0 Archaeal ATPase Miro PF08477.8 gi|385777226|ref|YP_005649794.1| - 0.062 13.8 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|385777226|ref|YP_005649794.1| - 0.083 12.4 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385777226|ref|YP_005649794.1| - 0.087 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|385777226|ref|YP_005649794.1| - 0.11 11.9 0.1 0.38 10.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|385777226|ref|YP_005649794.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.5 2 1 0 2 2 2 0 KAP family P-loop domain AAA PF00004.24 gi|385777226|ref|YP_005649794.1| - 0.12 12.5 0.1 1.3 9.2 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|385777226|ref|YP_005649794.1| - 0.13 11.6 0.1 0.46 9.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF815 PF05673.8 gi|385777226|ref|YP_005649794.1| - 0.15 11.0 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|385777226|ref|YP_005649794.1| - 0.17 11.7 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|385777227|ref|YP_005649795.1| - 4.9e-22 78.3 15.9 4.9e-22 78.3 11.0 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385777227|ref|YP_005649795.1| - 0.0018 17.6 0.1 0.0018 17.6 0.1 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C UPF0126 PF03458.8 gi|385777227|ref|YP_005649795.1| - 0.0028 17.2 4.9 0.0028 17.2 3.4 2.6 3 0 0 3 3 3 1 UPF0126 domain TRAM_LAG1_CLN8 PF03798.11 gi|385777227|ref|YP_005649795.1| - 0.27 10.7 6.1 0.55 9.7 4.3 1.7 1 1 0 1 1 1 0 TLC domain SBP_bac_5 PF00496.17 gi|385777228|ref|YP_005649796.1| - 4.7e-40 137.5 7.8 8.1e-40 136.7 5.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|385777228|ref|YP_005649796.1| - 0.015 14.9 9.7 0.024 14.2 6.7 1.3 1 0 0 1 1 1 0 Rifin/stevor family PRTP PF01366.13 gi|385777228|ref|YP_005649796.1| - 0.2 9.6 0.0 0.28 9.1 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus processing and transport protein TMEM154 PF15102.1 gi|385777228|ref|YP_005649796.1| - 1.1 9.0 19.8 2.2 7.9 13.7 1.5 1 0 0 1 1 1 0 TMEM154 protein family BPD_transp_1 PF00528.17 gi|385777229|ref|YP_005649797.1| - 1.1e-34 119.6 13.0 1.1e-34 119.6 9.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2897 PF11446.3 gi|385777229|ref|YP_005649797.1| - 0.0027 17.5 0.8 0.0027 17.5 0.6 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2897) YtpI PF14007.1 gi|385777230|ref|YP_005649798.1| - 0.025 14.4 2.2 0.026 14.4 1.5 1.1 1 0 0 1 1 1 0 YtpI-like protein Tmemb_14 PF03647.8 gi|385777230|ref|YP_005649798.1| - 0.18 12.1 2.6 0.19 12.1 1.8 1.1 1 0 0 1 1 1 0 Transmembrane proteins 14C DUF202 PF02656.10 gi|385777230|ref|YP_005649798.1| - 1.1 9.4 3.6 1.6 9.0 2.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) SdpI PF13630.1 gi|385777230|ref|YP_005649798.1| - 2.4 7.9 6.7 2.7 7.7 4.7 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF1894 PF08979.6 gi|385777232|ref|YP_005649800.1| - 0.24 11.4 0.8 0.69 9.9 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1894) MacB_PCD PF12704.2 gi|385777232|ref|YP_005649800.1| - 4.9 6.6 6.9 9.3 5.7 0.1 2.2 1 1 0 2 2 2 0 MacB-like periplasmic core domain MR_MLE_C PF13378.1 gi|385777233|ref|YP_005649801.1| - 1.3e-23 83.0 0.0 2.3e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|385777233|ref|YP_005649801.1| - 7.1e-15 55.0 0.1 1.7e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|385777233|ref|YP_005649801.1| - 1.4e-14 54.3 0.0 3e-14 53.2 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain adh_short PF00106.20 gi|385777234|ref|YP_005649802.1| - 2.5e-20 73.0 0.0 4e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385777234|ref|YP_005649802.1| - 1.5e-15 57.6 0.0 2.5e-15 56.9 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385777234|ref|YP_005649802.1| - 0.019 14.6 0.0 0.074 12.7 0.0 1.9 1 1 0 1 1 1 0 KR domain NAD_binding_10 PF13460.1 gi|385777234|ref|YP_005649802.1| - 0.041 13.8 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|385777234|ref|YP_005649802.1| - 0.062 12.7 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family DUF1404 PF07185.6 gi|385777235|ref|YP_005649803.1| - 2.1e-64 216.1 20.0 2.4e-64 215.9 13.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Rieske PF00355.21 gi|385777238|ref|YP_005649806.1| - 9.7e-13 47.5 0.1 2.2e-12 46.4 0.1 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain COX2 PF00116.15 gi|385777239|ref|YP_005649807.1| - 0.0011 18.7 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX1 PF00115.15 gi|385777240|ref|YP_005649808.1| - 5.4e-80 269.1 60.7 7.1e-80 268.8 42.1 1.0 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Cytochrom_B_N_2 PF13631.1 gi|385777241|ref|YP_005649809.1| - 2.2e-56 190.2 4.8 2.2e-56 190.2 3.3 4.2 4 1 1 5 5 5 2 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|385777241|ref|YP_005649809.1| - 0.012 15.8 4.3 0.012 15.8 3.0 4.4 3 2 3 6 6 6 0 Cytochrome b(C-terminal)/b6/petD Claudin_2 PF13903.1 gi|385777243|ref|YP_005649811.1| - 0.54 9.9 4.2 0.67 9.6 2.9 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF4282 PF14110.1 gi|385777243|ref|YP_005649811.1| - 1.3 9.2 6.3 1.7 8.9 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF4040 PF13244.1 gi|385777243|ref|YP_005649811.1| - 1.5 8.8 7.6 5.8 6.9 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) DUF3487 PF11990.3 gi|385777243|ref|YP_005649811.1| - 2.5 7.5 4.7 2.9 7.2 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) SdpI PF13630.1 gi|385777243|ref|YP_005649811.1| - 7.8 6.2 9.8 9.5 6.0 6.8 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family PAP2 PF01569.16 gi|385777244|ref|YP_005649812.1| - 4.4e-23 81.3 3.4 4.4e-23 81.3 2.4 2.0 3 0 0 3 3 3 1 PAP2 superfamily PAP2_C PF14360.1 gi|385777244|ref|YP_005649812.1| - 3 8.2 10.8 0.091 13.0 1.5 2.7 3 0 0 3 3 3 0 PAP2 superfamily C-terminal Arc_trans_TRASH PF08394.5 gi|385777245|ref|YP_005649813.1| - 3.7e-18 65.3 9.4 7e-18 64.4 6.5 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.1 gi|385777245|ref|YP_005649813.1| - 9.2e-13 47.3 1.4 1.5e-12 46.7 1.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|385777245|ref|YP_005649813.1| - 8.5e-10 38.2 0.2 1.3e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|385777245|ref|YP_005649813.1| - 1.4e-09 37.4 0.4 2.1e-09 36.9 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|385777245|ref|YP_005649813.1| - 8.2e-08 31.7 0.6 1.8e-07 30.7 0.4 1.5 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|385777245|ref|YP_005649813.1| - 2.3e-07 30.2 1.3 3.6e-07 29.6 0.9 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|385777245|ref|YP_005649813.1| - 7.3e-07 28.6 0.3 1.1e-06 28.0 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|385777245|ref|YP_005649813.1| - 2.6e-06 27.0 0.0 5.2e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|385777245|ref|YP_005649813.1| - 1.6e-05 24.3 0.1 3.6e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|385777245|ref|YP_005649813.1| - 3.1e-05 23.8 0.0 5.5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.8 gi|385777245|ref|YP_005649813.1| - 8.1e-05 22.8 0.3 0.00019 21.6 0.1 1.7 1 1 0 1 1 1 1 Mga helix-turn-helix domain HTH_17 PF12728.2 gi|385777245|ref|YP_005649813.1| - 9.7e-05 22.5 0.1 0.0012 19.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|385777245|ref|YP_005649813.1| - 0.00021 21.4 0.4 0.00085 19.4 0.1 2.0 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.1 gi|385777245|ref|YP_005649813.1| - 0.00021 21.2 0.4 0.0014 18.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|385777245|ref|YP_005649813.1| - 0.00025 20.5 1.1 0.00039 19.9 0.1 1.8 2 0 0 2 2 1 1 HTH DNA binding domain HTH_27 PF13463.1 gi|385777245|ref|YP_005649813.1| - 0.00031 21.0 0.2 0.00056 20.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|385777245|ref|YP_005649813.1| - 0.00032 20.4 0.5 0.00064 19.5 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix FeoC PF09012.5 gi|385777245|ref|YP_005649813.1| - 0.00038 20.1 0.8 0.0008 19.0 0.0 2.0 2 0 0 2 2 1 1 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|385777245|ref|YP_005649813.1| - 0.0004 19.8 0.4 0.0007 19.0 0.3 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|385777245|ref|YP_005649813.1| - 0.00066 19.7 0.1 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_31 PF13560.1 gi|385777245|ref|YP_005649813.1| - 0.00084 19.4 1.2 0.0014 18.8 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_6 PF01418.12 gi|385777245|ref|YP_005649813.1| - 0.0012 18.5 0.0 0.0022 17.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family GntR PF00392.16 gi|385777245|ref|YP_005649813.1| - 0.0017 17.7 0.3 0.003 16.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Mga PF08280.6 gi|385777245|ref|YP_005649813.1| - 0.0028 17.3 0.3 0.0062 16.2 0.1 1.7 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain CENP-B_N PF04218.8 gi|385777245|ref|YP_005649813.1| - 0.0052 16.1 0.1 0.014 14.7 0.1 1.7 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_Crp_2 PF13545.1 gi|385777245|ref|YP_005649813.1| - 0.0052 16.5 0.1 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|385777245|ref|YP_005649813.1| - 0.0096 15.7 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|385777245|ref|YP_005649813.1| - 0.011 15.5 0.1 0.011 15.5 0.1 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase zf-FCS PF06467.9 gi|385777245|ref|YP_005649813.1| - 0.012 15.2 3.3 0.028 14.0 2.3 1.6 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif HTH_29 PF13551.1 gi|385777245|ref|YP_005649813.1| - 0.014 15.5 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.15 gi|385777245|ref|YP_005649813.1| - 0.016 14.8 0.1 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family NUMOD1 PF07453.8 gi|385777245|ref|YP_005649813.1| - 0.016 15.0 0.1 0.048 13.5 0.1 1.9 1 0 0 1 1 1 0 NUMOD1 domain HTH_37 PF13744.1 gi|385777245|ref|YP_005649813.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|385777245|ref|YP_005649813.1| - 0.019 14.4 0.6 0.033 13.7 0.4 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|385777245|ref|YP_005649813.1| - 0.021 14.8 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_Tc3_2 PF01498.13 gi|385777245|ref|YP_005649813.1| - 0.025 14.6 0.6 0.42 10.7 0.3 2.1 2 0 0 2 2 2 0 Transposase HTH_AraC PF00165.18 gi|385777245|ref|YP_005649813.1| - 0.03 14.1 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_19 PF12844.2 gi|385777245|ref|YP_005649813.1| - 0.033 14.2 0.6 0.088 12.8 0.1 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain zf-LITAF-like PF10601.4 gi|385777245|ref|YP_005649813.1| - 0.034 13.9 0.2 0.058 13.2 0.1 1.3 1 0 0 1 1 1 0 LITAF-like zinc ribbon domain Sigma70_r4 PF04545.11 gi|385777245|ref|YP_005649813.1| - 0.041 13.1 0.7 0.12 11.6 0.5 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 EAP30 PF04157.11 gi|385777245|ref|YP_005649813.1| - 0.047 12.8 0.0 0.091 11.9 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Penicillinase_R PF03965.11 gi|385777245|ref|YP_005649813.1| - 0.049 13.7 0.0 0.076 13.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_Tnp_ISL3 PF13542.1 gi|385777245|ref|YP_005649813.1| - 0.079 12.1 0.2 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 ANT PF03374.9 gi|385777245|ref|YP_005649813.1| - 0.083 12.9 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_36 PF13730.1 gi|385777245|ref|YP_005649813.1| - 0.11 12.5 0.5 0.25 11.5 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain H_lectin PF09458.5 gi|385777245|ref|YP_005649813.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 H-type lectin domain HTH_psq PF05225.11 gi|385777245|ref|YP_005649813.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain LexA_DNA_bind PF01726.11 gi|385777245|ref|YP_005649813.1| - 0.14 11.7 0.3 0.3 10.6 0.2 1.6 1 1 0 1 1 1 0 LexA DNA binding domain Crp PF00325.15 gi|385777245|ref|YP_005649813.1| - 0.17 11.3 0.5 0.38 10.2 0.4 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_25 PF13413.1 gi|385777245|ref|YP_005649813.1| - 0.37 10.4 2.0 1.1 9.0 0.4 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain YHS PF04945.8 gi|385777246|ref|YP_005649814.1| - 4.5e-19 68.0 1.3 5.3e-19 67.7 0.9 1.0 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|385777246|ref|YP_005649814.1| - 1.2e-05 24.8 2.7 1.6e-05 24.4 1.4 1.5 1 1 1 2 2 2 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|385777246|ref|YP_005649814.1| - 8.7e-05 22.5 2.5 0.00012 22.1 1.7 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain Ribosomal_L24e PF01246.15 gi|385777246|ref|YP_005649814.1| - 0.037 13.8 0.1 0.042 13.6 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e HTH_Tnp_Tc3_1 PF11427.3 gi|385777246|ref|YP_005649814.1| - 0.15 11.7 0.1 0.25 10.9 0.1 1.3 1 0 0 1 1 1 0 Tc3 transposase E1-E2_ATPase PF00122.15 gi|385777247|ref|YP_005649815.1| - 2.1e-47 161.1 1.0 3.5e-47 160.3 0.7 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|385777247|ref|YP_005649815.1| - 4.1e-33 115.5 0.3 9.4e-33 114.4 0.2 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|385777247|ref|YP_005649815.1| - 1.2e-16 60.6 13.4 5.6e-14 52.0 0.9 3.5 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.2 gi|385777247|ref|YP_005649815.1| - 3.6e-15 56.6 0.2 1.5e-14 54.5 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|385777247|ref|YP_005649815.1| - 5.8e-12 45.7 1.2 7e-06 25.7 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase PrpR_N PF06506.6 gi|385777247|ref|YP_005649815.1| - 0.0049 16.3 0.2 0.95 8.8 0.0 2.8 1 1 1 2 2 2 1 Propionate catabolism activator Hydrolase_6 PF13344.1 gi|385777247|ref|YP_005649815.1| - 0.014 15.2 0.1 0.1 12.5 0.0 2.5 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase BON PF04972.12 gi|385777247|ref|YP_005649815.1| - 0.032 14.0 2.2 7.2 6.4 0.0 3.1 2 0 0 2 2 2 0 BON domain TroA PF01297.12 gi|385777247|ref|YP_005649815.1| - 0.05 12.8 0.1 3.9 6.6 0.0 2.9 2 1 1 3 3 3 0 Periplasmic solute binding protein family HAD_2 PF13419.1 gi|385777247|ref|YP_005649815.1| - 0.064 13.4 0.0 0.36 11.0 0.0 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase zf-Di19 PF05605.7 gi|385777248|ref|YP_005649816.1| - 0.0024 17.9 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding HTH_23 PF13384.1 gi|385777248|ref|YP_005649816.1| - 0.036 13.7 0.0 0.11 12.1 0.0 1.9 1 1 0 1 1 1 0 Homeodomain-like domain Transposase_21 PF02992.9 gi|385777248|ref|YP_005649816.1| - 0.049 12.7 0.2 0.067 12.2 0.1 1.1 1 0 0 1 1 1 0 Transposase family tnp2 ABC_tran PF00005.22 gi|385777249|ref|YP_005649817.1| - 5.7e-28 97.9 0.0 9.8e-28 97.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385777249|ref|YP_005649817.1| - 8.7e-16 58.7 4.1 1e-14 55.2 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|385777249|ref|YP_005649817.1| - 3.7e-06 26.2 0.4 0.0021 17.1 0.3 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|385777249|ref|YP_005649817.1| - 2.3e-05 23.8 0.1 4.2e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|385777249|ref|YP_005649817.1| - 0.00031 19.5 0.0 0.0004 19.2 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|385777249|ref|YP_005649817.1| - 0.0061 17.3 0.2 0.037 14.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|385777249|ref|YP_005649817.1| - 0.0066 16.4 0.0 0.014 15.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|385777249|ref|YP_005649817.1| - 0.0083 16.2 0.2 0.033 14.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|385777249|ref|YP_005649817.1| - 0.0087 16.4 2.4 0.025 14.9 1.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385777249|ref|YP_005649817.1| - 0.0087 15.7 0.0 0.021 14.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF977 PF06163.6 gi|385777249|ref|YP_005649817.1| - 0.013 15.2 0.1 0.049 13.3 0.1 2.1 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) SMC_N PF02463.14 gi|385777249|ref|YP_005649817.1| - 0.014 14.6 0.0 0.28 10.3 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.12 gi|385777249|ref|YP_005649817.1| - 0.017 14.5 0.0 0.2 11.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|385777249|ref|YP_005649817.1| - 0.028 13.6 0.1 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|385777249|ref|YP_005649817.1| - 0.043 12.9 0.0 0.078 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.10 gi|385777249|ref|YP_005649817.1| - 0.045 13.4 0.4 2.7 7.6 0.0 2.5 2 1 1 3 3 3 0 NTPase AAA_24 PF13479.1 gi|385777249|ref|YP_005649817.1| - 0.045 13.3 0.3 0.38 10.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385777249|ref|YP_005649817.1| - 0.053 13.4 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|385777249|ref|YP_005649817.1| - 0.063 13.1 0.2 3.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|385777249|ref|YP_005649817.1| - 0.077 12.5 0.0 0.22 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|385777249|ref|YP_005649817.1| - 0.078 13.1 0.1 0.25 11.5 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|385777249|ref|YP_005649817.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|385777249|ref|YP_005649817.1| - 0.12 11.8 0.1 0.23 10.8 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC2_membrane PF01061.19 gi|385777250|ref|YP_005649818.1| - 5.3e-15 55.1 27.4 5.3e-15 55.1 19.0 1.6 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|385777250|ref|YP_005649818.1| - 5.3e-10 38.8 32.3 5.3e-10 38.8 22.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein Romo1 PF10247.4 gi|385777250|ref|YP_005649818.1| - 0.0067 16.5 2.1 0.016 15.4 0.1 2.3 2 0 0 2 2 2 1 Reactive mitochondrial oxygen species modulator 1 DUF3501 PF12007.3 gi|385777252|ref|YP_005649820.1| - 5.9e-59 198.9 0.6 6.6e-59 198.8 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) CCG PF02754.11 gi|385777253|ref|YP_005649821.1| - 3.1e-18 65.5 0.0 2e-10 40.5 0.0 2.8 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|385777253|ref|YP_005649821.1| - 6.8e-05 22.8 8.3 0.00019 21.3 5.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385777253|ref|YP_005649821.1| - 0.00025 20.8 5.4 0.044 13.7 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385777253|ref|YP_005649821.1| - 0.00058 20.1 5.1 0.0016 18.7 3.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385777253|ref|YP_005649821.1| - 0.0027 17.9 7.1 0.0062 16.7 4.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385777253|ref|YP_005649821.1| - 0.016 15.4 10.2 0.23 11.8 7.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385777253|ref|YP_005649821.1| - 0.024 14.4 8.3 0.2 11.4 1.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385777253|ref|YP_005649821.1| - 0.031 13.8 11.9 0.53 9.9 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385777253|ref|YP_005649821.1| - 0.036 14.4 1.9 0.036 14.4 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385777253|ref|YP_005649821.1| - 0.16 11.8 11.6 2.4 8.0 1.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385777253|ref|YP_005649821.1| - 0.38 11.5 7.2 1.5 9.6 5.0 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|385777253|ref|YP_005649821.1| - 0.66 9.9 13.3 2.2 8.3 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385777253|ref|YP_005649821.1| - 1.2 9.6 6.1 15 6.0 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Rubrerythrin PF02915.12 gi|385777254|ref|YP_005649822.1| - 7.4e-26 91.1 0.8 1.1e-25 90.5 0.5 1.3 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|385777254|ref|YP_005649822.1| - 7.4e-11 41.9 0.1 7.2e-05 22.5 0.1 2.0 1 1 1 2 2 2 2 Ferritin-like domain DUF973 PF06157.6 gi|385777255|ref|YP_005649823.1| - 0.006 15.5 2.6 0.0087 15.0 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF2173 PF09941.4 gi|385777255|ref|YP_005649823.1| - 0.0066 16.3 0.0 0.014 15.2 0.0 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) DUF2207 PF09972.4 gi|385777255|ref|YP_005649823.1| - 0.011 14.3 4.5 0.019 13.5 3.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Cation_ATPase_C PF00689.16 gi|385777255|ref|YP_005649823.1| - 0.019 14.4 0.6 0.021 14.3 0.4 1.2 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus IncA PF04156.9 gi|385777255|ref|YP_005649823.1| - 0.092 12.3 2.2 0.14 11.7 1.6 1.3 1 0 0 1 1 1 0 IncA protein SdpI PF13630.1 gi|385777255|ref|YP_005649823.1| - 1.8 8.3 7.9 5.9 6.6 5.4 1.9 1 1 0 1 1 1 0 SdpI/YhfL protein family DUF2173 PF09941.4 gi|385777256|ref|YP_005649824.1| - 3.7e-05 23.5 0.0 6e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) Nfu_N PF08712.6 gi|385777256|ref|YP_005649824.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal Ald_Xan_dh_C2 PF02738.13 gi|385777257|ref|YP_005649825.1| - 2.2e-136 455.4 0.0 2.7e-136 455.0 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385777257|ref|YP_005649825.1| - 5.5e-24 84.3 0.0 1.6e-23 82.8 0.0 1.9 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Lipoprot_C PF08794.5 gi|385777257|ref|YP_005649825.1| - 0.1 12.4 0.2 0.26 11.1 0.1 1.7 2 0 0 2 2 2 0 Lipoprotein GNA1870 C terminal like Fer2_2 PF01799.15 gi|385777258|ref|YP_005649826.1| - 1.5e-33 114.4 0.9 2.7e-33 113.6 0.0 1.7 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|385777258|ref|YP_005649826.1| - 0.00011 21.9 2.3 0.00011 21.8 0.2 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|385777258|ref|YP_005649826.1| - 0.0011 18.7 1.8 0.0014 18.3 0.9 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.16 gi|385777259|ref|YP_005649827.1| - 9.4e-50 168.3 0.0 1.3e-49 167.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|385777259|ref|YP_005649827.1| - 2.6e-27 94.7 0.0 6e-27 93.5 0.0 1.6 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain AIRS_C PF02769.17 gi|385777260|ref|YP_005649828.1| - 3.3e-05 23.9 0.2 8.6e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain Rhodanese PF00581.15 gi|385777261|ref|YP_005649829.1| - 8.1e-11 42.2 0.0 1.1e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain RNA_pol_Rpc34 PF05158.7 gi|385777262|ref|YP_005649830.1| - 2e-06 27.2 0.1 2.2e-06 27.0 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit TFIIE_alpha PF02002.12 gi|385777262|ref|YP_005649830.1| - 1.4e-05 24.5 0.2 1.6e-05 24.3 0.1 1.0 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|385777262|ref|YP_005649830.1| - 3.3e-05 23.2 0.7 4.3e-05 22.8 0.5 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|385777262|ref|YP_005649830.1| - 0.00021 21.3 0.0 0.00032 20.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|385777262|ref|YP_005649830.1| - 0.00035 20.8 0.1 0.0004 20.6 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|385777262|ref|YP_005649830.1| - 0.00044 19.8 0.5 0.00052 19.5 0.3 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|385777262|ref|YP_005649830.1| - 0.00048 19.8 0.0 0.00061 19.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385777262|ref|YP_005649830.1| - 0.0005 19.6 0.2 0.00057 19.5 0.1 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|385777262|ref|YP_005649830.1| - 0.00053 19.6 0.2 0.00064 19.3 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|385777262|ref|YP_005649830.1| - 0.0023 17.5 0.5 0.0039 16.8 0.4 1.5 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain MarR PF01047.17 gi|385777262|ref|YP_005649830.1| - 0.0077 15.9 0.2 0.0093 15.6 0.1 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|385777262|ref|YP_005649830.1| - 0.01 15.9 0.1 0.014 15.5 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|385777262|ref|YP_005649830.1| - 0.013 15.1 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sulfolobus_pRN PF05584.6 gi|385777262|ref|YP_005649830.1| - 0.017 15.0 0.9 0.022 14.7 0.6 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_43 PF09904.4 gi|385777262|ref|YP_005649830.1| - 0.05 13.4 0.0 0.059 13.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix FeoC PF09012.5 gi|385777262|ref|YP_005649830.1| - 0.084 12.5 0.0 0.097 12.3 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.16 gi|385777262|ref|YP_005649830.1| - 0.085 12.3 0.4 0.11 11.9 0.2 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family Cullin PF00888.17 gi|385777262|ref|YP_005649830.1| - 0.093 11.2 0.1 0.096 11.2 0.1 1.0 1 0 0 1 1 1 0 Cullin family HTH_Mga PF08280.6 gi|385777262|ref|YP_005649830.1| - 0.094 12.4 0.3 0.13 12.0 0.2 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain NdhN PF11909.3 gi|385777262|ref|YP_005649830.1| - 0.11 11.7 0.1 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 NADH-quinone oxidoreductase cyanobacterial subunit N HTH_IclR PF09339.5 gi|385777262|ref|YP_005649830.1| - 0.13 11.8 0.2 0.29 10.7 0.1 1.6 1 1 1 2 2 2 0 IclR helix-turn-helix domain GTPase_Cys_C PF12631.2 gi|385777263|ref|YP_005649831.1| - 0.018 15.4 0.2 0.035 14.4 0.1 1.4 1 0 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF1641 PF07849.6 gi|385777264|ref|YP_005649832.1| - 5.6e-16 57.8 0.0 2e-15 56.1 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) DUF3886 PF13025.1 gi|385777264|ref|YP_005649832.1| - 0.0068 16.3 0.5 21 5.1 0.0 4.7 5 0 0 5 5 5 0 Protein of unknown function (DUF3886) efThoc1 PF11957.3 gi|385777264|ref|YP_005649832.1| - 0.024 13.1 0.1 0.052 12.0 0.0 1.5 1 0 0 1 1 1 0 THO complex subunit 1 transcription elongation factor PEP-utilisers_N PF05524.8 gi|385777264|ref|YP_005649832.1| - 0.024 14.4 1.0 0.34 10.7 0.1 3.0 2 1 1 3 3 3 0 PEP-utilising enzyme, N-terminal DUF2666 PF10869.3 gi|385777264|ref|YP_005649832.1| - 0.048 13.6 16.7 1.7 8.6 0.6 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF2666) DUF2743 PF10899.3 gi|385777264|ref|YP_005649832.1| - 0.059 12.7 0.5 0.14 11.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2743) DUF3289 PF11692.3 gi|385777264|ref|YP_005649832.1| - 0.06 12.6 4.7 0.47 9.6 0.6 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3289) SRP_SPB PF02978.14 gi|385777264|ref|YP_005649832.1| - 0.071 13.3 5.9 3 8.1 0.1 4.2 2 2 3 5 5 5 0 Signal peptide binding domain Rod-binding PF10135.4 gi|385777264|ref|YP_005649832.1| - 0.15 12.0 0.1 23 5.0 0.0 3.1 4 0 0 4 4 4 0 Rod binding protein DUF2482 PF10655.4 gi|385777264|ref|YP_005649832.1| - 0.28 11.2 8.4 8.7 6.4 0.1 4.7 3 1 1 4 4 4 0 Hypothetical protein of unknown function (DUF2482) Virulence_RhuM PF13310.1 gi|385777264|ref|YP_005649832.1| - 0.42 9.5 5.5 1.3 7.9 0.1 3.4 1 1 3 4 4 4 0 Virulence protein RhuM family Phage_tail_T PF06223.7 gi|385777264|ref|YP_005649832.1| - 0.71 10.3 2.8 16 6.0 0.0 3.5 3 1 1 4 4 4 0 Minor tail protein T LUC7 PF03194.10 gi|385777264|ref|YP_005649832.1| - 0.76 9.2 6.3 8.8 5.7 0.1 3.0 1 1 1 3 3 3 0 LUC7 N_terminus DnaB PF00772.16 gi|385777264|ref|YP_005649832.1| - 1.2 9.0 6.3 72 3.3 0.1 4.3 4 1 1 5 5 5 0 DnaB-like helicase N terminal domain DrsE PF02635.10 gi|385777265|ref|YP_005649833.1| - 1.7e-09 37.8 0.0 2e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|385777265|ref|YP_005649833.1| - 1.6e-06 27.9 0.1 4.3e-06 26.5 0.0 1.6 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family DUF3456 PF11938.3 gi|385777265|ref|YP_005649833.1| - 0.07 13.1 0.0 0.092 12.7 0.0 1.1 1 0 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP TENA_THI-4 PF03070.11 gi|385777265|ref|YP_005649833.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 TENA/THI-4/PQQC family Pyr_redox_2 PF07992.9 gi|385777266|ref|YP_005649834.1| - 3e-08 33.7 0.0 7.1e-08 32.5 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385777266|ref|YP_005649834.1| - 0.062 13.7 0.2 2.4 8.6 0.0 2.8 2 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase TusA PF01206.12 gi|385777267|ref|YP_005649835.1| - 1.1e-12 47.4 0.0 1.2e-12 47.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE PF02635.10 gi|385777268|ref|YP_005649836.1| - 0.0083 16.1 0.0 0.0089 16.0 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family AMP-binding_C_2 PF14535.1 gi|385777269|ref|YP_005649837.1| - 4.1e-18 65.2 2.9 1.6e-17 63.2 1.1 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|385777269|ref|YP_005649837.1| - 6.2e-17 61.0 0.0 1e-16 60.3 0.0 1.5 1 1 0 1 1 1 1 AMP-binding enzyme Actin PF00022.14 gi|385777269|ref|YP_005649837.1| - 0.094 11.1 0.0 1 7.7 0.0 2.2 2 0 0 2 2 2 0 Actin DUF35_N PF12172.3 gi|385777270|ref|YP_005649838.1| - 3.4e-12 45.8 0.1 4.8e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|385777270|ref|YP_005649838.1| - 1.5e-10 41.1 0.0 3e-10 40.1 0.0 1.5 1 1 1 2 2 2 1 DUF35 OB-fold domain DZR PF12773.2 gi|385777270|ref|YP_005649838.1| - 0.028 14.2 0.8 0.042 13.6 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|385777270|ref|YP_005649838.1| - 0.12 11.7 1.4 1.6 8.0 0.0 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|385777270|ref|YP_005649838.1| - 0.16 11.6 1.9 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|385777270|ref|YP_005649838.1| - 0.25 10.6 3.0 8.2 5.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|385777270|ref|YP_005649838.1| - 0.41 10.4 4.1 0.61 9.9 0.4 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-CCHC PF00098.18 gi|385777270|ref|YP_005649838.1| - 1.2 9.1 8.6 1.4 8.9 1.5 2.3 2 0 0 2 2 2 0 Zinc knuckle Thiolase_C PF02803.13 gi|385777271|ref|YP_005649839.1| - 5.9e-10 38.6 0.6 6.1e-09 35.3 0.0 2.7 3 0 0 3 3 3 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|385777271|ref|YP_005649839.1| - 7.5e-10 38.2 1.0 1.1e-09 37.6 0.0 1.8 3 0 0 3 3 3 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|385777271|ref|YP_005649839.1| - 1.8e-05 24.3 5.2 0.00059 19.3 2.3 2.6 1 1 1 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|385777271|ref|YP_005649839.1| - 0.0028 17.4 0.4 1 9.2 0.0 3.4 4 0 0 4 4 4 1 Beta-ketoacyl synthase, C-terminal domain ECH PF00378.15 gi|385777272|ref|YP_005649840.1| - 2.7e-80 269.0 0.9 3.1e-80 268.8 0.6 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|385777272|ref|YP_005649840.1| - 0.0005 19.8 0.3 0.0036 17.1 0.0 2.4 3 0 0 3 3 3 1 Peptidase family S49 ECH_C PF13766.1 gi|385777272|ref|YP_005649840.1| - 0.026 14.6 0.4 0.06 13.4 0.1 1.7 2 0 0 2 2 2 0 2-enoyl-CoA Hydratase C-terminal region DNA_pol_E_B PF04042.11 gi|385777272|ref|YP_005649840.1| - 0.11 11.6 0.0 11 5.2 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase alpha/epsilon subunit B ECH PF00378.15 gi|385777273|ref|YP_005649841.1| - 4.1e-39 134.1 0.0 4.6e-39 133.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 4HBT PF03061.17 gi|385777274|ref|YP_005649842.1| - 1.1e-13 51.0 0.0 1.6e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|385777274|ref|YP_005649842.1| - 0.0032 17.4 0.0 0.0051 16.7 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) RNA_pol_I_A49 PF06870.7 gi|385777274|ref|YP_005649842.1| - 0.015 13.8 0.0 0.02 13.4 0.0 1.1 1 0 0 1 1 1 0 A49-like RNA polymerase I associated factor Acyl-ACP_TE PF01643.12 gi|385777274|ref|YP_005649842.1| - 0.026 13.4 0.0 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase YccV-like PF08755.6 gi|385777274|ref|YP_005649842.1| - 0.056 13.3 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 Hemimethylated DNA-binding protein YccV like AurF PF11583.3 gi|385777275|ref|YP_005649843.1| - 8.2e-05 21.6 0.0 0.009 14.9 0.0 2.5 3 0 0 3 3 3 2 P-aminobenzoate N-oxygenase AurF Rubrerythrin PF02915.12 gi|385777275|ref|YP_005649843.1| - 0.05 13.9 0.3 0.44 10.8 0.0 2.4 2 1 0 2 2 2 0 Rubrerythrin Antitoxin-MazE PF04014.13 gi|385777276|ref|YP_005649844.1| - 1.1e-08 34.6 0.4 2.4e-08 33.5 0.3 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|385777276|ref|YP_005649844.1| - 7e-06 26.4 11.7 0.019 15.4 2.0 2.9 2 1 0 2 2 2 2 PhoU domain NAGLU_C PF12972.2 gi|385777276|ref|YP_005649844.1| - 0.1 11.9 0.1 0.24 10.7 0.1 1.5 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain DUF4640 PF15480.1 gi|385777276|ref|YP_005649844.1| - 0.12 11.9 0.1 0.16 11.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4640) PMC2NT PF08066.7 gi|385777276|ref|YP_005649844.1| - 0.17 12.2 3.5 6.7 7.0 0.1 2.9 3 1 0 3 3 3 0 PMC2NT (NUC016) domain Imm22 PF15592.1 gi|385777276|ref|YP_005649844.1| - 0.4 11.0 4.8 0.58 10.5 1.6 2.5 1 1 1 2 2 2 0 Immunity protein 22 Syntaxin-6_N PF09177.6 gi|385777276|ref|YP_005649844.1| - 6.7 7.1 8.4 4.3 7.8 0.6 3.2 3 1 1 4 4 4 0 Syntaxin 6, N-terminal SBP_bac_5 PF00496.17 gi|385777277|ref|YP_005649845.1| - 6.9e-63 212.7 5.4 6.9e-63 212.7 3.8 2.3 2 1 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Rifin_STEVOR PF02009.11 gi|385777277|ref|YP_005649845.1| - 0.0036 16.9 7.9 0.0074 15.9 5.5 1.4 1 0 0 1 1 1 1 Rifin/stevor family TMEM154 PF15102.1 gi|385777277|ref|YP_005649845.1| - 0.084 12.5 15.6 0.18 11.4 10.8 1.5 1 0 0 1 1 1 0 TMEM154 protein family SSP160 PF06933.6 gi|385777277|ref|YP_005649845.1| - 1.3 6.8 29.3 2.6 5.9 20.3 1.4 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Herpes_UL45 PF05473.7 gi|385777277|ref|YP_005649845.1| - 5.4 6.3 8.5 12 5.2 5.9 1.5 1 0 0 1 1 1 0 UL45 protein BPD_transp_1 PF00528.17 gi|385777278|ref|YP_005649846.1| - 4.6e-48 163.1 15.1 4.6e-48 163.1 10.5 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|385777279|ref|YP_005649847.1| - 1.3e-26 93.3 17.2 1.3e-26 93.3 11.9 1.8 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|385777280|ref|YP_005649848.1| - 6.8e-28 97.6 0.0 9.6e-28 97.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385777280|ref|YP_005649848.1| - 4.6e-19 68.5 0.0 7.7e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385777280|ref|YP_005649848.1| - 1.5e-12 48.1 1.6 6e-10 39.5 1.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385777280|ref|YP_005649848.1| - 3.7e-07 29.5 0.1 6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385777280|ref|YP_005649848.1| - 7.3e-06 25.4 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|385777280|ref|YP_005649848.1| - 0.00019 21.7 0.3 0.0047 17.2 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385777280|ref|YP_005649848.1| - 0.00037 20.6 0.2 0.0018 18.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385777280|ref|YP_005649848.1| - 0.0013 18.7 0.0 0.003 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|385777280|ref|YP_005649848.1| - 0.0031 17.8 0.0 0.0049 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385777280|ref|YP_005649848.1| - 0.0045 17.7 0.1 0.0098 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385777280|ref|YP_005649848.1| - 0.018 14.9 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385777280|ref|YP_005649848.1| - 0.042 13.2 1.0 2.2 7.6 0.7 2.6 1 1 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|385777280|ref|YP_005649848.1| - 0.045 13.4 0.0 0.091 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.13 gi|385777280|ref|YP_005649848.1| - 0.047 13.2 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.12 gi|385777280|ref|YP_005649848.1| - 0.067 12.5 0.4 13 5.2 0.0 2.8 2 1 1 3 3 3 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|385777280|ref|YP_005649848.1| - 0.069 11.9 0.2 0.19 10.5 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_15 PF13175.1 gi|385777280|ref|YP_005649848.1| - 0.11 11.4 6.1 0.36 9.8 1.2 2.2 1 1 1 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|385777280|ref|YP_005649848.1| - 0.12 11.4 0.0 0.4 9.8 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|385777280|ref|YP_005649848.1| - 0.12 11.5 0.0 0.26 10.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 GCD14 PF08704.5 gi|385777280|ref|YP_005649848.1| - 0.14 11.6 0.4 0.27 10.7 0.0 1.5 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit G-alpha PF00503.15 gi|385777280|ref|YP_005649848.1| - 0.15 10.7 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ABC_ATPase PF09818.4 gi|385777280|ref|YP_005649848.1| - 0.18 10.3 0.7 10 4.5 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|385777281|ref|YP_005649849.1| - 7.9e-37 126.6 0.0 1.1e-36 126.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385777281|ref|YP_005649849.1| - 2.5e-22 78.9 0.2 5.9e-22 77.8 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385777281|ref|YP_005649849.1| - 1.3e-12 48.2 0.3 1.1e-10 41.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385777281|ref|YP_005649849.1| - 4.1e-06 26.9 0.3 9.8e-06 25.7 0.2 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385777281|ref|YP_005649849.1| - 8e-05 21.9 2.4 0.0013 18.0 1.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|385777281|ref|YP_005649849.1| - 0.00019 21.7 0.5 0.00065 20.0 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385777281|ref|YP_005649849.1| - 0.00025 20.2 1.4 0.36 9.8 0.2 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.1 gi|385777281|ref|YP_005649849.1| - 0.00051 18.6 0.5 0.24 9.8 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|385777281|ref|YP_005649849.1| - 0.00064 19.1 0.1 0.0035 16.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385777281|ref|YP_005649849.1| - 0.0008 19.6 0.7 0.068 13.3 0.5 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|385777281|ref|YP_005649849.1| - 0.0017 19.1 0.4 0.0039 18.0 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385777281|ref|YP_005649849.1| - 0.0024 17.8 0.2 0.0072 16.3 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain KaiC PF06745.8 gi|385777281|ref|YP_005649849.1| - 0.0047 16.0 1.6 0.032 13.3 0.3 2.4 2 1 0 2 2 2 1 KaiC AAA_29 PF13555.1 gi|385777281|ref|YP_005649849.1| - 0.0081 15.6 0.1 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|385777281|ref|YP_005649849.1| - 0.011 15.5 0.3 0.053 13.4 0.2 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|385777281|ref|YP_005649849.1| - 0.064 13.7 0.3 0.19 12.2 0.2 1.9 1 1 0 1 1 1 0 Miro-like protein ATP-synt_ab PF00006.20 gi|385777281|ref|YP_005649849.1| - 0.068 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|385777281|ref|YP_005649849.1| - 0.098 12.3 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF258 PF03193.11 gi|385777281|ref|YP_005649849.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|385777281|ref|YP_005649849.1| - 0.14 11.5 0.6 0.34 10.3 0.4 1.6 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|385777281|ref|YP_005649849.1| - 0.14 11.8 1.1 3.7 7.2 0.8 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|385777281|ref|YP_005649849.1| - 0.2 11.3 1.4 0.24 11.0 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|385777281|ref|YP_005649849.1| - 0.31 11.3 1.5 0.95 9.7 1.0 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|385777281|ref|YP_005649849.1| - 0.35 10.2 1.5 7.9 5.8 0.0 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein bPH_2 PF03703.9 gi|385777282|ref|YP_005649850.1| - 0.00016 21.6 0.0 0.00046 20.1 0.0 1.8 1 1 0 1 1 1 1 Bacterial PH domain zf-LYAR PF08790.6 gi|385777282|ref|YP_005649850.1| - 0.013 15.2 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger AhpC-TSA PF00578.16 gi|385777283|ref|YP_005649851.1| - 7.2e-40 135.5 0.2 8.4e-40 135.3 0.1 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385777283|ref|YP_005649851.1| - 1.9e-28 98.8 0.2 2.2e-28 98.6 0.2 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|385777283|ref|YP_005649851.1| - 0.0016 18.5 0.1 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like SCO1-SenC PF02630.9 gi|385777283|ref|YP_005649851.1| - 0.12 12.0 0.1 0.19 11.3 0.1 1.5 1 1 0 1 1 1 0 SCO1/SenC Lactococcin PF04369.8 gi|385777283|ref|YP_005649851.1| - 0.16 11.9 0.1 0.27 11.1 0.1 1.3 1 0 0 1 1 1 0 Lactococcin-like family Trypsin_2 PF13365.1 gi|385777284|ref|YP_005649852.1| - 2.2e-17 63.1 0.1 3.3e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|385777284|ref|YP_005649852.1| - 6.8e-14 51.5 0.1 1.7e-13 50.2 0.1 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|385777284|ref|YP_005649852.1| - 1.9e-08 34.1 0.1 5.1e-07 29.4 0.1 2.1 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|385777284|ref|YP_005649852.1| - 9.4e-07 28.9 0.1 2.6e-06 27.4 0.1 1.8 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S32 PF05579.8 gi|385777284|ref|YP_005649852.1| - 0.0013 17.7 0.1 0.038 12.9 0.1 2.1 1 1 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Tricorn_PDZ PF14685.1 gi|385777284|ref|YP_005649852.1| - 0.0025 17.5 0.1 0.0076 16.0 0.0 1.8 1 1 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_S46 PF10459.4 gi|385777284|ref|YP_005649852.1| - 0.022 13.2 0.2 0.032 12.6 0.2 1.2 1 0 0 1 1 1 0 Peptidase S46 Peptidase_S7 PF00949.16 gi|385777284|ref|YP_005649852.1| - 0.033 13.5 0.0 0.07 12.5 0.0 1.5 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease DUF4382 PF14321.1 gi|385777285|ref|YP_005649853.1| - 4.4e-26 91.6 0.1 5e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) GCP5-Mod21 PF14609.1 gi|385777285|ref|YP_005649853.1| - 0.11 10.6 0.3 0.13 10.3 0.2 1.0 1 0 0 1 1 1 0 gamma-Tubulin ring complex non-core subunit mod21 DUF1708 PF08101.6 gi|385777286|ref|YP_005649854.1| - 0.1 11.3 0.0 0.23 10.2 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1708) Glycos_transf_1 PF00534.15 gi|385777287|ref|YP_005649855.1| - 1.3e-25 89.7 0.0 2.1e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385777287|ref|YP_005649855.1| - 3.6e-07 30.3 0.0 6.2e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385777287|ref|YP_005649855.1| - 1e-06 28.9 0.0 3.2e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 TPPII_N PF12583.3 gi|385777287|ref|YP_005649855.1| - 0.18 11.9 0.0 0.33 11.0 0.0 1.3 1 0 0 1 1 1 0 Tripeptidyl peptidase II N terminal CENP-S PF15630.1 gi|385777289|ref|YP_005649857.1| - 0.012 15.7 0.1 0.038 14.1 0.0 1.9 2 1 0 2 2 2 0 Kinetochore component CENP-S Cyc-maltodext_C PF10438.4 gi|385777289|ref|YP_005649857.1| - 0.043 13.8 0.2 0.082 12.9 0.1 1.5 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain Sporozoite_P67 PF05642.6 gi|385777289|ref|YP_005649857.1| - 0.22 9.3 0.4 0.23 9.2 0.3 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF1284 PF06935.6 gi|385777289|ref|YP_005649857.1| - 1.9 8.6 6.1 0.8 9.9 0.9 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1284) ABC1 PF03109.11 gi|385777291|ref|YP_005649859.1| - 4.8e-20 71.7 0.0 1.9e-19 69.7 0.0 2.0 2 0 0 2 2 2 1 ABC1 family RIO1 PF01163.17 gi|385777291|ref|YP_005649859.1| - 4.7e-06 26.0 0.5 9.6e-06 25.0 0.1 1.6 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.20 gi|385777291|ref|YP_005649859.1| - 0.00017 20.8 0.5 0.00088 18.4 0.4 2.0 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|385777291|ref|YP_005649859.1| - 0.021 14.5 0.0 0.066 12.9 0.0 1.7 2 0 0 2 2 2 0 Phosphotransferase enzyme family Gp-FAR-1 PF05823.7 gi|385777291|ref|YP_005649859.1| - 0.72 9.7 4.6 2.3 8.1 0.9 3.2 3 1 0 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HSP20 PF00011.16 gi|385777292|ref|YP_005649860.1| - 1.4e-09 37.7 0.1 1.7e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family DUF4403 PF14356.1 gi|385777292|ref|YP_005649860.1| - 0.048 11.9 0.1 0.086 11.1 0.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4403) GvpH PF05455.6 gi|385777292|ref|YP_005649860.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.6 1 1 0 1 1 1 0 GvpH OrfB_IS605 PF01385.14 gi|385777293|ref|YP_005649861.1| - 4.4e-27 94.9 6.6 5.7e-27 94.5 4.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385777293|ref|YP_005649861.1| - 8.1e-24 83.0 0.0 1.7e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385777293|ref|YP_005649861.1| - 0.024 13.9 0.1 4.3 6.7 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HxlR PF01638.12 gi|385777293|ref|YP_005649861.1| - 0.027 14.0 0.5 0.33 10.6 0.2 2.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix UPF0547 PF10571.4 gi|385777293|ref|YP_005649861.1| - 0.086 12.5 0.8 4.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HrcA PF01628.16 gi|385777293|ref|YP_005649861.1| - 0.11 12.0 0.1 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 HrcA protein C terminal domain zf-ribbon_3 PF13248.1 gi|385777293|ref|YP_005649861.1| - 0.16 11.1 1.8 3.7 6.8 2.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385777293|ref|YP_005649861.1| - 0.29 10.9 0.8 9 6.1 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|385777293|ref|YP_005649861.1| - 1 9.5 3.3 0.5 10.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|385777293|ref|YP_005649861.1| - 5.7 6.8 5.5 5 7.0 0.4 3.2 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 MHYT PF03707.11 gi|385777294|ref|YP_005649862.1| - 0.01 15.9 0.6 0.01 15.9 0.4 1.5 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat DUF1328 PF07043.8 gi|385777294|ref|YP_005649862.1| - 0.015 15.2 2.9 0.015 15.2 2.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1328) QCR10 PF09796.4 gi|385777294|ref|YP_005649862.1| - 0.069 12.8 0.3 0.11 12.1 0.1 1.5 1 1 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) DUF996 PF06195.8 gi|385777294|ref|YP_005649862.1| - 0.19 11.7 8.9 0.21 11.5 6.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF996) DUF2976 PF11190.3 gi|385777294|ref|YP_005649862.1| - 0.4 10.2 5.8 0.47 9.9 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) DUF308 PF03729.8 gi|385777294|ref|YP_005649862.1| - 0.69 9.9 10.2 0.89 9.5 7.1 1.2 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF2074 PF09847.4 gi|385777296|ref|YP_005649864.1| - 1.4e-83 281.1 82.7 1.6e-83 280.9 57.3 1.0 1 0 0 1 1 1 1 Predicted permease (DUF2074) ABC_tran PF00005.22 gi|385777297|ref|YP_005649865.1| - 5.5e-21 75.3 0.0 8.9e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385777297|ref|YP_005649865.1| - 2.1e-13 50.8 3.3 3.2e-11 43.7 2.3 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385777297|ref|YP_005649865.1| - 1.3e-05 24.6 0.5 0.0067 15.6 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385777297|ref|YP_005649865.1| - 8.5e-05 22.9 0.1 0.00023 21.5 0.1 1.7 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|385777297|ref|YP_005649865.1| - 9.2e-05 21.8 0.0 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|385777297|ref|YP_005649865.1| - 0.00077 18.9 0.0 0.55 9.6 0.1 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|385777297|ref|YP_005649865.1| - 0.0013 17.8 0.5 0.12 11.4 0.2 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|385777297|ref|YP_005649865.1| - 0.0062 16.7 0.1 0.019 15.1 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|385777297|ref|YP_005649865.1| - 0.013 14.7 0.1 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|385777297|ref|YP_005649865.1| - 0.014 14.9 0.0 0.054 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain STAS PF01740.16 gi|385777297|ref|YP_005649865.1| - 0.025 14.0 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 STAS domain NACHT PF05729.7 gi|385777297|ref|YP_005649865.1| - 0.038 13.6 0.1 2.3 7.8 0.0 2.6 3 0 0 3 3 3 0 NACHT domain AAA_16 PF13191.1 gi|385777297|ref|YP_005649865.1| - 0.046 13.6 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain MukB PF04310.7 gi|385777297|ref|YP_005649865.1| - 0.051 12.8 0.0 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal MutS_V PF00488.16 gi|385777297|ref|YP_005649865.1| - 0.081 12.3 0.0 5.4 6.3 0.0 2.3 2 0 0 2 2 2 0 MutS domain V AAA_22 PF13401.1 gi|385777297|ref|YP_005649865.1| - 0.11 12.6 0.2 0.51 10.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain PCMT PF01135.14 gi|385777298|ref|YP_005649866.1| - 1.8e-40 138.6 0.0 2.5e-40 138.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|385777298|ref|YP_005649866.1| - 4.8e-09 35.6 0.1 1.2e-08 34.2 0.0 1.6 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.2 gi|385777298|ref|YP_005649866.1| - 2.7e-07 31.1 0.0 4.8e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385777298|ref|YP_005649866.1| - 3.1e-05 23.6 0.0 4.6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|385777298|ref|YP_005649866.1| - 4.4e-05 23.1 0.1 0.00013 21.5 0.0 1.7 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|385777298|ref|YP_005649866.1| - 0.00041 20.1 0.0 0.00073 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385777298|ref|YP_005649866.1| - 0.0022 17.3 0.0 0.0036 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DOT1 PF08123.8 gi|385777298|ref|YP_005649866.1| - 0.0041 16.4 0.0 0.0063 15.8 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_26 PF13659.1 gi|385777298|ref|YP_005649866.1| - 0.0089 16.0 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|385777298|ref|YP_005649866.1| - 0.016 14.2 0.1 0.03 13.3 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_11 PF08241.7 gi|385777298|ref|YP_005649866.1| - 0.019 15.4 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|385777298|ref|YP_005649866.1| - 0.02 13.9 0.0 0.043 12.8 0.0 1.6 1 0 0 1 1 1 0 Putative methyltransferase CMAS PF02353.15 gi|385777298|ref|YP_005649866.1| - 0.038 13.0 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|385777298|ref|YP_005649866.1| - 0.058 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|385777298|ref|YP_005649866.1| - 0.061 12.4 0.0 0.078 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TENA_THI-4 PF03070.11 gi|385777299|ref|YP_005649867.1| - 2e-42 145.3 4.1 2.3e-42 145.1 2.8 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Aminotran_5 PF00266.14 gi|385777300|ref|YP_005649868.1| - 8.1e-37 126.8 0.0 1.1e-36 126.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V PRP4 PF08799.6 gi|385777300|ref|YP_005649868.1| - 0.055 12.7 0.5 0.12 11.6 0.4 1.6 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like DsrH PF04077.7 gi|385777300|ref|YP_005649868.1| - 0.11 12.2 0.0 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 DsrH like protein Rib_5-P_isom_A PF06026.9 gi|385777301|ref|YP_005649869.1| - 0.032 13.5 0.2 0.038 13.3 0.1 1.1 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Orbi_NS3 PF01616.11 gi|385777301|ref|YP_005649869.1| - 0.055 12.4 0.6 0.066 12.1 0.4 1.1 1 0 0 1 1 1 0 Orbivirus NS3 K-box PF01486.12 gi|385777301|ref|YP_005649869.1| - 0.068 12.9 4.7 0.054 13.2 2.4 1.4 2 0 0 2 2 2 0 K-box region EVE PF01878.13 gi|385777302|ref|YP_005649870.1| - 7.7e-19 68.1 0.4 9e-19 67.9 0.3 1.0 1 0 0 1 1 1 1 EVE domain DUF2197 PF09963.4 gi|385777302|ref|YP_005649870.1| - 0.051 13.5 0.1 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) Y1_Tnp PF01797.11 gi|385777303|ref|YP_005649871.1| - 1.6e-38 131.2 2.2 1.8e-38 131.0 1.5 1.0 1 0 0 1 1 1 1 Transposase IS200 like FBP PF07299.6 gi|385777303|ref|YP_005649871.1| - 0.11 11.8 0.7 0.15 11.3 0.5 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein (FBP) OrfB_IS605 PF01385.14 gi|385777304|ref|YP_005649872.1| - 1e-36 126.4 5.7 1.9e-36 125.5 4.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385777304|ref|YP_005649872.1| - 7.5e-28 96.0 0.3 2e-27 94.6 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|385777304|ref|YP_005649872.1| - 2.3e-08 33.1 1.3 2.8e-08 32.9 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.7 gi|385777304|ref|YP_005649872.1| - 0.03 13.6 1.3 4.5 6.6 0.0 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding DUF3543 PF12063.3 gi|385777304|ref|YP_005649872.1| - 0.058 12.6 3.4 1.2 8.2 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3543) zinc_ribbon_2 PF13240.1 gi|385777304|ref|YP_005649872.1| - 0.063 12.7 1.9 7.5 6.1 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|385777304|ref|YP_005649872.1| - 0.066 13.0 0.3 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.6 gi|385777304|ref|YP_005649872.1| - 0.12 12.5 0.4 0.12 12.5 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|385777304|ref|YP_005649872.1| - 0.23 10.7 4.0 5.4 6.3 0.2 2.2 1 1 2 3 3 3 0 zinc-ribbon domain TIM PF00121.13 gi|385777306|ref|YP_005649874.1| - 3.3e-26 91.8 0.1 1.1e-20 73.7 0.0 2.0 2 0 0 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|385777306|ref|YP_005649874.1| - 0.0001 21.4 0.3 0.00016 20.8 0.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|385777306|ref|YP_005649874.1| - 0.00015 20.7 0.1 0.00024 20.0 0.1 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|385777306|ref|YP_005649874.1| - 0.00046 19.4 0.0 0.00061 19.0 0.0 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|385777306|ref|YP_005649874.1| - 0.00073 18.8 0.8 0.0035 16.6 0.1 2.2 3 0 0 3 3 3 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|385777306|ref|YP_005649874.1| - 0.0044 16.0 0.2 0.0065 15.4 0.1 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase IGPS PF00218.16 gi|385777306|ref|YP_005649874.1| - 0.0045 16.0 0.0 0.0067 15.5 0.0 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DUF561 PF04481.7 gi|385777306|ref|YP_005649874.1| - 0.0064 15.4 2.3 0.046 12.6 0.2 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF561) G3P_antiterm PF04309.7 gi|385777306|ref|YP_005649874.1| - 0.01 14.9 0.3 0.01 14.9 0.2 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.16 gi|385777306|ref|YP_005649874.1| - 0.011 14.7 1.4 0.013 14.4 0.1 1.7 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|385777306|ref|YP_005649874.1| - 0.06 12.2 0.5 0.086 11.7 0.4 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.15 gi|385777306|ref|YP_005649874.1| - 0.061 11.8 0.5 0.12 10.8 0.3 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain PcrB PF01884.12 gi|385777306|ref|YP_005649874.1| - 0.19 10.9 4.0 0.063 12.5 0.9 1.5 2 0 0 2 2 2 0 PcrB family DUF429 PF04250.8 gi|385777307|ref|YP_005649875.1| - 2.4e-25 89.0 0.5 4.8e-24 84.7 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DUF762 PF05555.6 gi|385777307|ref|YP_005649875.1| - 0.074 12.2 0.3 0.092 11.9 0.2 1.3 1 0 0 1 1 1 0 Coxiella burnetii protein of unknown function (DUF762) Polysacc_synt_C PF14667.1 gi|385777308|ref|YP_005649876.1| - 0.81 9.4 29.1 0.043 13.6 5.9 2.1 1 1 1 2 2 2 0 Polysaccharide biosynthesis C-terminal domain Tmemb_14 PF03647.8 gi|385777308|ref|YP_005649876.1| - 2.3 8.6 12.1 0.44 10.9 6.0 1.6 2 0 0 2 2 2 0 Transmembrane proteins 14C TctB PF07331.6 gi|385777308|ref|YP_005649876.1| - 2.6 7.6 22.7 3.9 7.1 15.7 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Yip1 PF04893.12 gi|385777308|ref|YP_005649876.1| - 3.5 7.1 33.0 4.3 6.8 22.0 1.7 1 1 0 1 1 1 0 Yip1 domain ABC2_membrane_5 PF13346.1 gi|385777308|ref|YP_005649876.1| - 8.8 5.5 29.7 12 5.1 20.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Citrate_synt PF00285.16 gi|385777309|ref|YP_005649877.1| - 2.5e-126 421.1 0.0 2.8e-126 421.0 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase CBS PF00571.23 gi|385777310|ref|YP_005649878.1| - 4.8e-31 106.2 1.0 3.5e-16 58.7 0.1 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.11 gi|385777310|ref|YP_005649878.1| - 0.017 15.0 0.4 8.2 6.4 0.1 2.6 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Acetyltransf_10 PF13673.1 gi|385777310|ref|YP_005649878.1| - 0.019 15.1 0.0 0.053 13.6 0.0 1.6 1 1 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF896 PF05979.7 gi|385777310|ref|YP_005649878.1| - 0.027 14.0 0.3 2.1 7.9 0.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) Acetyltransf_7 PF13508.1 gi|385777310|ref|YP_005649878.1| - 0.034 14.3 0.0 0.079 13.1 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF3659 PF12396.3 gi|385777310|ref|YP_005649878.1| - 0.038 13.6 2.3 1.7 8.3 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3659) PRC PF05239.11 gi|385777310|ref|YP_005649878.1| - 0.15 11.9 2.0 0.18 11.6 0.4 1.9 2 0 0 2 2 2 0 PRC-barrel domain PEP_mutase PF13714.1 gi|385777311|ref|YP_005649879.1| - 9e-59 198.5 0.4 1.1e-58 198.3 0.2 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|385777311|ref|YP_005649879.1| - 1.6e-13 49.7 0.8 3.8e-13 48.5 0.4 1.7 1 1 1 2 2 2 1 Isocitrate lyase family ThiG PF05690.9 gi|385777311|ref|YP_005649879.1| - 0.071 12.1 1.1 0.16 11.0 0.3 2.1 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG Pantoate_transf PF02548.10 gi|385777311|ref|YP_005649879.1| - 0.078 12.0 0.1 0.32 10.0 0.0 1.9 1 1 1 2 2 2 0 Ketopantoate hydroxymethyltransferase DUF881 PF05949.7 gi|385777311|ref|YP_005649879.1| - 0.083 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) MmgE_PrpD PF03972.9 gi|385777312|ref|YP_005649880.1| - 4.3e-104 348.1 0.0 4.9e-104 347.9 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Ldh_1_N PF00056.18 gi|385777313|ref|YP_005649881.1| - 1.2e-29 102.9 0.0 2.4e-29 101.9 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|385777313|ref|YP_005649881.1| - 1.7e-13 50.6 0.0 2.6e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain F420_oxidored PF03807.12 gi|385777313|ref|YP_005649881.1| - 0.00011 22.5 0.1 0.00028 21.2 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|385777313|ref|YP_005649881.1| - 0.0044 16.8 0.0 0.0089 15.8 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|385777313|ref|YP_005649881.1| - 0.0049 16.6 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|385777313|ref|YP_005649881.1| - 0.048 13.3 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|385777314|ref|YP_005649882.1| - 2.8e-20 72.7 0.0 6.9e-20 71.4 0.0 1.6 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385777314|ref|YP_005649882.1| - 3.1e-07 29.5 0.0 4.4e-06 25.7 0.0 2.4 2 1 0 2 2 2 1 RmlD substrate binding domain UDPG_MGDP_dh_N PF03721.9 gi|385777314|ref|YP_005649882.1| - 7.8e-05 22.1 0.0 0.00014 21.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.20 gi|385777314|ref|YP_005649882.1| - 0.00087 19.2 0.0 0.002 18.0 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385777314|ref|YP_005649882.1| - 0.0033 17.1 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.10 gi|385777314|ref|YP_005649882.1| - 0.0046 15.8 0.1 0.01 14.7 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|385777314|ref|YP_005649882.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding DAO PF01266.19 gi|385777314|ref|YP_005649882.1| - 0.041 12.8 0.2 0.064 12.1 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Glyco_transf_28 PF03033.15 gi|385777314|ref|YP_005649882.1| - 0.053 13.2 0.1 0.17 11.6 0.0 1.9 2 1 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Saccharop_dh PF03435.13 gi|385777314|ref|YP_005649882.1| - 0.14 11.0 0.0 0.27 10.1 0.0 1.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase DUF3216 PF11505.3 gi|385777315|ref|YP_005649883.1| - 0.014 15.1 0.8 0.47 10.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3216) PDDEXK_3 PF13366.1 gi|385777315|ref|YP_005649883.1| - 0.048 13.7 1.6 0.25 11.3 0.5 2.2 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily HTH_24 PF13412.1 gi|385777316|ref|YP_005649884.1| - 9.1e-22 76.1 0.1 4.2e-11 42.0 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385777316|ref|YP_005649884.1| - 4.2e-17 61.3 0.0 1.7e-11 43.4 0.0 2.3 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|385777316|ref|YP_005649884.1| - 6.8e-08 32.0 0.1 0.00032 20.2 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|385777316|ref|YP_005649884.1| - 3.6e-07 29.7 0.4 1.5e-05 24.5 0.1 2.7 3 0 0 3 3 3 1 HTH domain HTH_10 PF04967.7 gi|385777316|ref|YP_005649884.1| - 2.4e-06 27.0 0.1 0.022 14.3 0.0 2.6 3 0 0 3 3 2 2 HTH DNA binding domain HTH_8 PF02954.14 gi|385777316|ref|YP_005649884.1| - 3.9e-06 26.2 0.3 0.0043 16.5 0.0 2.8 3 0 0 3 3 3 2 Bacterial regulatory protein, Fis family MarR_2 PF12802.2 gi|385777316|ref|YP_005649884.1| - 4.3e-06 26.2 0.1 0.063 12.9 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|385777316|ref|YP_005649884.1| - 4.7e-06 26.2 0.1 0.0044 16.7 0.0 2.8 3 0 0 3 3 3 1 MarR family HTH_DeoR PF08220.7 gi|385777316|ref|YP_005649884.1| - 3.4e-05 23.2 0.0 0.00016 21.1 0.0 2.1 3 0 0 3 3 2 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|385777316|ref|YP_005649884.1| - 9.6e-05 21.9 0.0 0.2 11.3 0.0 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_20 PF12840.2 gi|385777316|ref|YP_005649884.1| - 9.7e-05 22.1 0.0 0.11 12.3 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|385777316|ref|YP_005649884.1| - 0.00025 20.7 1.3 0.012 15.2 0.1 3.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|385777316|ref|YP_005649884.1| - 0.00096 18.5 0.2 0.19 11.1 0.0 2.6 3 0 0 3 3 2 1 Sigma-70, region 4 TFIIE_alpha PF02002.12 gi|385777316|ref|YP_005649884.1| - 0.001 18.5 1.0 0.012 15.0 0.1 2.5 3 0 0 3 3 3 1 TFIIE alpha subunit GerE PF00196.14 gi|385777316|ref|YP_005649884.1| - 0.0013 18.0 0.0 0.098 11.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|385777316|ref|YP_005649884.1| - 0.0026 17.2 0.2 1.1 8.9 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Mga PF08280.6 gi|385777316|ref|YP_005649884.1| - 0.0042 16.8 0.1 0.029 14.1 0.1 2.2 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|385777316|ref|YP_005649884.1| - 0.0044 16.9 0.0 2.7 7.9 0.0 2.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain NUMOD1 PF07453.8 gi|385777316|ref|YP_005649884.1| - 0.0049 16.6 0.0 0.096 12.5 0.0 3.1 3 0 0 3 3 3 1 NUMOD1 domain HTH_28 PF13518.1 gi|385777316|ref|YP_005649884.1| - 0.009 15.9 0.0 1.5 8.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|385777316|ref|YP_005649884.1| - 0.015 14.7 0.0 0.041 13.3 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.2 gi|385777316|ref|YP_005649884.1| - 0.018 15.2 0.1 0.13 12.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|385777316|ref|YP_005649884.1| - 0.023 14.5 0.0 13 5.7 0.0 2.9 3 0 0 3 3 2 0 Helix-turn-helix HTH_1 PF00126.22 gi|385777316|ref|YP_005649884.1| - 0.024 14.3 0.0 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Put_DNA-bind_N PF06971.8 gi|385777316|ref|YP_005649884.1| - 0.025 14.3 0.4 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus MerR PF00376.18 gi|385777316|ref|YP_005649884.1| - 0.042 13.3 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 MerR family regulatory protein Sigma70_r4 PF04545.11 gi|385777316|ref|YP_005649884.1| - 0.052 12.8 0.0 0.43 9.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|385777316|ref|YP_005649884.1| - 0.065 12.4 0.0 0.44 9.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.1 gi|385777316|ref|YP_005649884.1| - 0.069 12.9 0.0 3.8 7.3 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_30 PF13556.1 gi|385777316|ref|YP_005649884.1| - 0.07 12.7 0.0 3.3 7.3 0.0 2.3 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|385777316|ref|YP_005649884.1| - 0.081 12.7 0.0 5.8 6.8 0.0 2.3 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_40 PF14493.1 gi|385777316|ref|YP_005649884.1| - 0.086 13.0 0.6 8 6.7 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|385777316|ref|YP_005649884.1| - 0.11 12.1 1.7 0.53 10.0 0.0 2.7 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain SET_assoc PF11767.3 gi|385777316|ref|YP_005649884.1| - 0.13 11.5 2.1 0.29 10.4 0.0 2.4 3 0 0 3 3 3 0 Histone lysine methyltransferase SET associated PIN PF01850.16 gi|385777317|ref|YP_005649885.1| - 3.6e-19 69.2 0.1 4.1e-19 69.0 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.1 gi|385777317|ref|YP_005649885.1| - 0.0012 18.5 0.1 0.022 14.5 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) TYW3 PF02676.9 gi|385777317|ref|YP_005649885.1| - 0.031 13.3 0.0 0.039 13.0 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase TYW3 Antitoxin-MazE PF04014.13 gi|385777318|ref|YP_005649886.1| - 1.8e-12 46.7 0.3 2.4e-12 46.3 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2138 PF09909.4 gi|385777319|ref|YP_005649887.1| - 0.11 10.6 0.0 0.11 10.6 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2138) bZIP_2 PF07716.10 gi|385777319|ref|YP_005649887.1| - 0.2 11.5 3.1 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Peptidase_M61 PF05299.7 gi|385777320|ref|YP_005649888.1| - 1.3e-40 138.1 0.5 2.1e-40 137.5 0.3 1.3 1 0 0 1 1 1 1 M61 glycyl aminopeptidase Peptidase_MA_2 PF13485.1 gi|385777320|ref|YP_005649888.1| - 4.8e-08 33.0 0.1 7.8e-08 32.4 0.1 1.3 1 0 0 1 1 1 1 Peptidase MA superfamily PDZ PF00595.19 gi|385777320|ref|YP_005649888.1| - 1.9e-05 24.7 0.2 4e-05 23.7 0.2 1.4 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) PDZ_2 PF13180.1 gi|385777320|ref|YP_005649888.1| - 0.00041 20.1 0.0 0.00094 19.0 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Phage_int_SAM_3 PF14659.1 gi|385777320|ref|YP_005649888.1| - 0.028 14.6 1.1 0.028 14.6 0.8 2.3 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Fer4 PF00037.22 gi|385777321|ref|YP_005649889.1| - 3.7e-14 51.6 13.9 3.5e-07 29.5 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385777321|ref|YP_005649889.1| - 7.4e-12 45.3 6.9 9.6e-12 44.9 4.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385777321|ref|YP_005649889.1| - 6.2e-10 38.5 14.1 4.1e-06 26.4 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385777321|ref|YP_005649889.1| - 4.9e-09 35.8 18.7 4.9e-07 29.4 5.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385777321|ref|YP_005649889.1| - 5.5e-09 36.2 8.4 8.3e-09 35.6 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385777321|ref|YP_005649889.1| - 3.3e-08 33.2 5.5 4.2e-08 32.9 3.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777321|ref|YP_005649889.1| - 4.8e-08 32.9 10.5 1.2e-06 28.4 4.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385777321|ref|YP_005649889.1| - 1.8e-06 27.7 8.3 0.017 15.3 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385777321|ref|YP_005649889.1| - 1.9e-06 27.4 11.5 0.0068 16.2 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|385777321|ref|YP_005649889.1| - 5.2e-06 26.7 3.6 0.0019 18.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385777321|ref|YP_005649889.1| - 1.1e-05 25.6 14.6 0.0077 16.7 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385777321|ref|YP_005649889.1| - 2.5e-05 24.5 0.6 0.23 11.8 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|385777321|ref|YP_005649889.1| - 4e-05 23.9 9.9 0.018 15.4 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|385777321|ref|YP_005649889.1| - 4.1e-05 24.0 9.4 0.046 14.2 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|385777321|ref|YP_005649889.1| - 0.00037 21.1 8.1 0.0073 17.0 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain HTH_34 PF13601.1 gi|385777322|ref|YP_005649890.1| - 8.4e-06 25.7 0.6 1.5e-05 24.9 0.4 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|385777322|ref|YP_005649890.1| - 0.00082 19.6 0.3 0.0042 17.3 0.1 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|385777322|ref|YP_005649890.1| - 0.0025 17.4 1.5 0.0083 15.8 0.4 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|385777322|ref|YP_005649890.1| - 0.0063 16.0 0.5 0.0089 15.5 0.3 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) Sulfolobus_pRN PF05584.6 gi|385777322|ref|YP_005649890.1| - 0.0067 16.3 0.5 0.049 13.5 0.1 2.1 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_20 PF12840.2 gi|385777322|ref|YP_005649890.1| - 0.011 15.4 0.0 0.025 14.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain GAS PF13851.1 gi|385777322|ref|YP_005649890.1| - 0.026 13.7 1.5 0.13 11.4 0.9 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding MarR_2 PF12802.2 gi|385777322|ref|YP_005649890.1| - 0.048 13.3 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family z-alpha PF02295.12 gi|385777322|ref|YP_005649890.1| - 0.06 13.1 0.8 0.24 11.1 0.1 2.1 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain DUF1495 PF07381.6 gi|385777322|ref|YP_005649890.1| - 0.063 12.9 0.4 0.65 9.6 0.3 2.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) EAP30 PF04157.11 gi|385777322|ref|YP_005649890.1| - 0.071 12.2 0.2 3.7 6.6 0.0 2.0 2 0 0 2 2 2 0 EAP30/Vps36 family DAGK_acc PF00609.14 gi|385777323|ref|YP_005649891.1| - 0.07 13.2 0.2 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase accessory domain SfsA PF03749.8 gi|385777324|ref|YP_005649892.1| - 1.8e-56 190.9 0.0 2.2e-56 190.7 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein DUF3350 PF11830.3 gi|385777324|ref|YP_005649892.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3350) DUF929 PF06053.6 gi|385777325|ref|YP_005649893.1| - 1.7e-80 269.7 15.8 1.9e-80 269.5 11.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) DUF3753 PF12575.3 gi|385777325|ref|YP_005649893.1| - 0.12 12.1 0.2 0.25 11.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) VIT1 PF01988.14 gi|385777327|ref|YP_005649895.1| - 3.9e-46 157.2 9.0 3.9e-46 157.2 6.2 2.2 3 0 0 3 3 3 1 VIT family Rubrerythrin PF02915.12 gi|385777327|ref|YP_005649895.1| - 8.9e-09 35.7 4.8 1.6e-08 34.9 3.3 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|385777327|ref|YP_005649895.1| - 0.097 12.6 0.6 15 5.4 0.1 2.4 1 1 1 2 2 2 0 Ferritin-like domain DUF3311 PF11755.3 gi|385777329|ref|YP_005649897.1| - 0.012 15.1 1.2 0.012 15.1 0.8 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3311) DUF4212 PF13937.1 gi|385777329|ref|YP_005649897.1| - 8.5 6.4 8.5 2.8 7.9 4.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4212) Nitroreductase PF00881.19 gi|385777330|ref|YP_005649898.1| - 8.9e-33 113.4 0.0 1.1e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF1104 PF06518.6 gi|385777330|ref|YP_005649898.1| - 0.042 13.9 0.1 0.082 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1104) Pyr_redox_2 PF07992.9 gi|385777331|ref|YP_005649899.1| - 1.2e-30 106.9 3.5 2e-29 102.8 2.4 3.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385777331|ref|YP_005649899.1| - 1.6e-21 76.5 2.5 9.5e-17 61.1 0.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|385777331|ref|YP_005649899.1| - 6.2e-16 58.3 0.2 2.8e-15 56.3 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.17 gi|385777331|ref|YP_005649899.1| - 1.9e-15 56.6 1.7 1.3e-06 27.5 0.3 4.1 3 1 0 3 3 3 3 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|385777331|ref|YP_005649899.1| - 1.9e-09 37.3 0.4 0.00073 19.5 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|385777331|ref|YP_005649899.1| - 1.2e-07 32.0 1.3 1.9e-05 24.8 0.4 3.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385777331|ref|YP_005649899.1| - 3.2e-07 29.7 1.8 0.0043 16.1 0.0 2.8 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|385777331|ref|YP_005649899.1| - 4.8e-07 28.6 3.2 0.00011 20.8 0.1 3.8 3 1 1 4 4 4 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|385777331|ref|YP_005649899.1| - 1.9e-06 27.0 6.5 9.2e-06 24.7 0.1 3.4 4 0 0 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|385777331|ref|YP_005649899.1| - 6e-06 25.5 0.0 0.00057 19.0 0.0 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|385777331|ref|YP_005649899.1| - 2.3e-05 24.2 0.1 0.74 9.5 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding DAO PF01266.19 gi|385777331|ref|YP_005649899.1| - 3.2e-05 23.0 3.9 0.22 10.4 0.0 3.7 3 1 0 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|385777331|ref|YP_005649899.1| - 0.00021 20.5 3.8 0.0057 15.7 0.0 3.7 4 1 1 5 5 5 1 Thi4 family UDPG_MGDP_dh_N PF03721.9 gi|385777331|ref|YP_005649899.1| - 0.0019 17.5 0.4 0.53 9.6 0.0 3.6 3 1 1 4 4 4 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|385777331|ref|YP_005649899.1| - 0.012 14.5 1.2 2 7.2 0.1 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein TrkA_N PF02254.13 gi|385777331|ref|YP_005649899.1| - 0.019 14.9 1.8 3.8 7.5 0.0 3.4 4 0 0 4 4 4 0 TrkA-N domain Amino_oxidase PF01593.19 gi|385777331|ref|YP_005649899.1| - 0.07 12.1 0.1 33 3.3 0.0 3.4 4 0 0 4 4 4 0 Flavin containing amine oxidoreductase MFS_1 PF07690.11 gi|385777332|ref|YP_005649900.1| - 2.1e-16 59.5 57.2 9.3e-15 54.1 39.9 2.1 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385777332|ref|YP_005649900.1| - 2.7e-15 55.8 46.0 3.7e-11 42.2 13.4 2.1 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|385777332|ref|YP_005649900.1| - 1.6 7.0 32.1 28 2.9 21.0 2.8 1 1 1 2 2 2 0 MFS/sugar transport protein DUF3343 PF11823.3 gi|385777333|ref|YP_005649901.1| - 0.041 13.1 0.1 0.3 10.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3343) CENP-M PF11111.3 gi|385777333|ref|YP_005649901.1| - 0.062 12.5 0.1 0.08 12.1 0.1 1.1 1 0 0 1 1 1 0 Centromere protein M (CENP-M) Gln-synt_C PF00120.19 gi|385777335|ref|YP_005649903.1| - 5e-77 258.5 0.0 9.1e-77 257.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Amidohydro_2 PF04909.9 gi|385777336|ref|YP_005649904.1| - 2.8e-32 112.3 0.0 3.6e-32 111.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|385777336|ref|YP_005649904.1| - 0.00014 21.1 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 TatD related DNase Ovate PF04844.8 gi|385777336|ref|YP_005649904.1| - 0.024 14.4 0.2 0.065 13.0 0.1 1.7 1 0 0 1 1 1 0 Transcriptional repressor, ovate YfmQ PF10787.4 gi|385777336|ref|YP_005649904.1| - 0.05 12.9 0.5 3.7 6.8 0.0 2.9 3 0 0 3 3 3 0 Uncharacterised protein from bacillus cereus group PNGaseA PF12222.3 gi|385777337|ref|YP_005649905.1| - 2.2e-142 474.9 13.2 2.2e-142 474.8 9.2 1.6 2 0 0 2 2 2 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Pro-kuma_activ PF09286.6 gi|385777338|ref|YP_005649906.1| - 3.1e-10 40.2 0.0 5.6e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|385777338|ref|YP_005649906.1| - 9.2e-08 31.5 0.4 1.8e-07 30.5 0.3 1.4 1 0 0 1 1 1 1 Subtilase family 7kD_DNA_binding PF02294.13 gi|385777339|ref|YP_005649907.1| - 4.2e-43 144.8 5.1 4.7e-43 144.7 3.5 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain zf-C2H2_4 PF13894.1 gi|385777340|ref|YP_005649908.1| - 0.017 15.3 0.5 0.033 14.5 0.3 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|385777340|ref|YP_005649908.1| - 0.045 14.0 0.3 0.1 13.0 0.2 1.6 1 0 0 1 1 1 0 Zinc finger, C2H2 type AA_permease_2 PF13520.1 gi|385777341|ref|YP_005649909.1| - 1.4e-27 96.2 62.0 1.8e-27 95.9 43.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385777341|ref|YP_005649909.1| - 3.8e-06 25.5 50.4 3.8e-06 25.5 34.9 1.4 1 1 0 1 1 1 1 Amino acid permease DUF3366 PF11846.3 gi|385777341|ref|YP_005649909.1| - 0.14 12.0 3.2 0.61 9.9 2.2 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) DUF3290 PF11694.3 gi|385777341|ref|YP_005649909.1| - 0.28 10.8 3.4 16 5.1 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3290) Class_IIIsignal PF04021.7 gi|385777344|ref|YP_005649912.1| - 1.7 8.4 9.5 0.5 10.1 3.5 2.2 2 0 0 2 2 2 0 Class III signal peptide DUF748 PF05359.6 gi|385777345|ref|YP_005649913.1| - 0.0064 16.5 1.2 0.011 15.7 0.8 1.4 1 1 0 1 1 1 1 Domain of Unknown Function (DUF748) DUF3988 PF13149.1 gi|385777345|ref|YP_005649913.1| - 0.042 13.3 10.0 0.042 13.3 6.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3988) tRNA_anti-codon PF01336.20 gi|385777345|ref|YP_005649913.1| - 0.074 12.9 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain PPC PF04151.10 gi|385777345|ref|YP_005649913.1| - 6.4 7.8 8.4 63 4.6 5.5 2.3 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain AAA_21 PF13304.1 gi|385777346|ref|YP_005649914.1| - 0.19 11.6 7.6 1.2 9.0 5.3 2.0 1 1 0 1 1 1 0 AAA domain HTH_23 PF13384.1 gi|385777348|ref|YP_005649916.1| - 2.3e-09 36.6 0.2 4.8e-09 35.5 0.1 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|385777348|ref|YP_005649916.1| - 2e-08 34.0 0.2 3.7e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|385777348|ref|YP_005649916.1| - 8.8e-06 25.1 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|385777348|ref|YP_005649916.1| - 1.3e-05 25.3 0.0 1.6e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Terminase_5 PF06056.7 gi|385777348|ref|YP_005649916.1| - 0.00013 21.4 0.0 0.00025 20.5 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4_2 PF08281.7 gi|385777348|ref|YP_005649916.1| - 0.0005 19.4 0.0 0.00087 18.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|385777348|ref|YP_005649916.1| - 0.0047 16.0 0.1 0.0099 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.14 gi|385777348|ref|YP_005649916.1| - 0.023 13.9 0.0 0.041 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.15 gi|385777348|ref|YP_005649916.1| - 0.029 14.3 0.1 0.067 13.1 0.0 1.7 1 1 1 2 2 2 0 Transposase HTH_40 PF14493.1 gi|385777348|ref|YP_005649916.1| - 0.034 14.3 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|385777348|ref|YP_005649916.1| - 0.046 13.1 0.0 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding CENP-B_N PF04218.8 gi|385777348|ref|YP_005649916.1| - 0.091 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_7 PF02796.10 gi|385777348|ref|YP_005649916.1| - 0.094 12.5 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Zn_Tnp_IS1 PF03811.8 gi|385777348|ref|YP_005649916.1| - 0.35 10.3 1.6 0.7 9.4 1.1 1.4 1 0 0 1 1 1 0 InsA N-terminal domain DUF748 PF05359.6 gi|385777349|ref|YP_005649917.1| - 0.0064 16.5 1.2 0.011 15.7 0.8 1.4 1 1 0 1 1 1 1 Domain of Unknown Function (DUF748) DUF3988 PF13149.1 gi|385777349|ref|YP_005649917.1| - 0.042 13.3 10.0 0.042 13.3 6.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3988) tRNA_anti-codon PF01336.20 gi|385777349|ref|YP_005649917.1| - 0.074 12.9 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain PPC PF04151.10 gi|385777349|ref|YP_005649917.1| - 6.4 7.8 8.4 63 4.6 5.5 2.3 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain DUF2203 PF09969.4 gi|385777350|ref|YP_005649918.1| - 3.8e-34 117.4 0.0 5.5e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2203) DUF2114 PF09887.4 gi|385777350|ref|YP_005649918.1| - 0.13 10.5 0.0 0.14 10.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) Ald_Xan_dh_C2 PF02738.13 gi|385777351|ref|YP_005649919.1| - 6.6e-154 513.2 0.0 8.2e-154 512.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385777351|ref|YP_005649919.1| - 5.4e-32 110.1 0.0 1.1e-31 109.1 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SpoIIIAH PF12685.2 gi|385777351|ref|YP_005649919.1| - 0.013 15.0 0.3 0.023 14.1 0.2 1.4 1 0 0 1 1 1 0 SpoIIIAH-like protein Rhodanese PF00581.15 gi|385777352|ref|YP_005649920.1| - 1.8e-13 50.8 0.0 2.5e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain DUF1494 PF07379.6 gi|385777353|ref|YP_005649921.1| - 0.11 12.3 0.4 0.16 11.8 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1494) Herpes_US9 PF06072.6 gi|385777353|ref|YP_005649921.1| - 0.33 10.8 2.2 0.67 9.8 1.5 1.4 1 0 0 1 1 1 0 Alphaherpesvirus tegument protein US9 Peptidase_M1 PF01433.15 gi|385777354|ref|YP_005649922.1| - 2e-112 376.1 1.0 2.7e-112 375.7 0.7 1.2 1 0 0 1 1 1 1 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|385777354|ref|YP_005649922.1| - 1.9e-19 69.9 0.5 1.9e-19 69.9 0.4 2.2 2 0 0 2 2 2 1 Peptidase MA superfamily ERAP1_C PF11838.3 gi|385777354|ref|YP_005649922.1| - 4.6e-19 68.8 0.5 8.3e-19 67.9 0.0 1.7 2 1 0 2 2 2 1 ERAP1-like C-terminal domain Helicase_IV_N PF12462.3 gi|385777354|ref|YP_005649922.1| - 0.02 14.5 0.1 0.055 13.1 0.0 1.7 2 0 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal DUF2265 PF10023.4 gi|385777354|ref|YP_005649922.1| - 0.023 13.8 0.4 0.047 12.8 0.0 1.6 2 0 0 2 2 2 0 Predicted aminopeptidase (DUF2265) Lipl32 PF12103.3 gi|385777355|ref|YP_005649923.1| - 0.057 12.8 0.3 0.068 12.6 0.2 1.1 1 0 0 1 1 1 0 Surface lipoprotein of Spirochaetales order Bap31 PF05529.7 gi|385777355|ref|YP_005649923.1| - 0.071 12.5 0.1 0.082 12.3 0.0 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like AP_endonuc_2 PF01261.19 gi|385777356|ref|YP_005649924.1| - 3.3e-25 88.6 0.1 4.5e-25 88.2 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|385777356|ref|YP_005649924.1| - 0.00083 18.4 0.0 0.001 18.1 0.0 1.2 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF1307 PF06998.6 gi|385777356|ref|YP_005649924.1| - 0.013 15.5 0.0 0.033 14.2 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1307) DeoC PF01791.4 gi|385777356|ref|YP_005649924.1| - 0.016 14.5 0.2 0.021 14.0 0.2 1.3 1 0 0 1 1 1 0 DeoC/LacD family aldolase Decorin_bind PF02352.10 gi|385777356|ref|YP_005649924.1| - 0.058 13.3 1.9 0.072 13.0 0.3 2.0 2 1 0 2 2 2 0 Decorin binding protein Hydrolase_3 PF08282.7 gi|385777357|ref|YP_005649925.1| - 2e-25 89.8 0.2 5.3e-16 58.9 0.1 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|385777357|ref|YP_005649925.1| - 7.5e-07 28.6 0.0 0.0029 16.9 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|385777357|ref|YP_005649925.1| - 0.02 15.0 0.1 0.067 13.3 0.1 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase MTS PF05175.9 gi|385777358|ref|YP_005649926.1| - 0.0025 17.2 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain HAD_2 PF13419.1 gi|385777359|ref|YP_005649927.1| - 4.5e-23 82.3 0.0 5.4e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385777359|ref|YP_005649927.1| - 1.6e-08 34.1 0.0 1.5e-07 31.0 0.0 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|385777359|ref|YP_005649927.1| - 2e-07 31.6 0.0 6.6e-06 26.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|385777359|ref|YP_005649927.1| - 0.00064 19.9 0.1 0.0021 18.2 0.0 1.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|385777359|ref|YP_005649927.1| - 0.071 13.0 0.0 0.72 9.7 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HTH_20 PF12840.2 gi|385777360|ref|YP_005649928.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.14 gi|385777360|ref|YP_005649928.1| - 0.00032 20.3 0.2 0.00039 20.0 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family CENP-B_N PF04218.8 gi|385777360|ref|YP_005649928.1| - 0.033 13.6 0.3 0.072 12.5 0.0 1.7 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain DNA_pol_B_thumb PF14791.1 gi|385777360|ref|YP_005649928.1| - 0.044 13.4 0.0 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 DNA polymerase beta thumb LexA_DNA_bind PF01726.11 gi|385777360|ref|YP_005649928.1| - 0.048 13.2 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain TF_Zn_Ribbon PF08271.7 gi|385777360|ref|YP_005649928.1| - 0.053 12.8 1.3 2 7.8 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding C1_1 PF00130.17 gi|385777360|ref|YP_005649928.1| - 0.055 13.2 0.4 0.092 12.4 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|385777360|ref|YP_005649928.1| - 0.064 13.2 4.5 0.19 11.6 3.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|385777360|ref|YP_005649928.1| - 0.069 13.4 2.6 0.67 10.3 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger double domain DUF387 PF04079.11 gi|385777360|ref|YP_005649928.1| - 0.088 12.1 0.0 0.094 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) zf-C3HC4_3 PF13920.1 gi|385777360|ref|YP_005649928.1| - 0.11 12.1 2.8 0.18 11.5 2.0 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TrmB PF01978.14 gi|385777360|ref|YP_005649928.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cys_rich_CPCC PF14206.1 gi|385777360|ref|YP_005649928.1| - 0.15 11.6 1.0 0.22 11.1 0.7 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC TFIIS_C PF01096.13 gi|385777360|ref|YP_005649928.1| - 0.19 11.3 1.4 11 5.6 0.0 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin PF00301.15 gi|385777360|ref|YP_005649928.1| - 0.22 11.4 4.2 6.8 6.6 2.9 2.2 1 1 0 1 1 1 0 Rubredoxin A2L_zn_ribbon PF08792.5 gi|385777360|ref|YP_005649928.1| - 0.23 10.9 1.4 7.1 6.2 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RING_5 PF14634.1 gi|385777360|ref|YP_005649928.1| - 0.39 10.4 2.5 0.71 9.6 1.7 1.4 1 0 0 1 1 1 0 zinc-RING finger domain UPF0547 PF10571.4 gi|385777360|ref|YP_005649928.1| - 0.4 10.4 4.2 0.76 9.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_5 PF13909.1 gi|385777360|ref|YP_005649928.1| - 3.4 8.0 4.9 1.7 9.0 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc-finger domain zf-trcl PF13451.1 gi|385777360|ref|YP_005649928.1| - 3.5 7.3 7.2 6.8 6.4 0.8 2.3 1 1 1 2 2 2 0 Probable zinc-binding domain RmlD_sub_bind PF04321.12 gi|385777361|ref|YP_005649929.1| - 1.5e-19 70.0 0.0 1.8e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|385777361|ref|YP_005649929.1| - 6e-06 25.8 0.0 8.5e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF4322 PF14210.1 gi|385777362|ref|YP_005649930.1| - 2.3e-38 129.4 0.5 8.7e-38 127.6 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4322) DDE_5 PF13546.1 gi|385777362|ref|YP_005649930.1| - 0.0027 16.5 0.0 0.0054 15.6 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease PepSY_2 PF13670.1 gi|385777362|ref|YP_005649930.1| - 0.015 15.2 0.0 6.4 6.7 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain FAD_binding_4 PF01565.18 gi|385777363|ref|YP_005649931.1| - 3.3e-33 114.0 0.0 8.4e-33 112.7 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.1 gi|385777363|ref|YP_005649931.1| - 7.7e-08 32.5 2.1 1.5e-07 31.6 1.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385777363|ref|YP_005649931.1| - 1.5e-07 31.3 2.4 3.7e-07 30.0 1.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385777363|ref|YP_005649931.1| - 1.9e-07 30.7 2.3 7.6e-07 28.8 1.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385777363|ref|YP_005649931.1| - 3.1e-07 30.7 5.0 0.00055 20.3 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385777363|ref|YP_005649931.1| - 1.1e-06 28.8 0.4 0.0053 16.9 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385777363|ref|YP_005649931.1| - 5.2e-06 26.7 4.2 1.2e-05 25.5 2.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385777363|ref|YP_005649931.1| - 0.002 17.9 5.4 0.21 11.4 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|385777363|ref|YP_005649931.1| - 0.0031 16.8 0.0 0.051 12.8 0.0 2.4 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain Fer4 PF00037.22 gi|385777363|ref|YP_005649931.1| - 0.0078 15.7 15.1 0.034 13.7 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385777363|ref|YP_005649931.1| - 0.011 15.6 12.0 0.015 15.2 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|385777363|ref|YP_005649931.1| - 0.12 13.0 9.4 1.1 10.0 6.7 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|385777363|ref|YP_005649931.1| - 0.31 10.6 1.3 19 4.9 0.1 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|385777363|ref|YP_005649931.1| - 3.4 7.7 16.8 0.029 14.2 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|385777363|ref|YP_005649931.1| - 5.5 7.7 18.3 1.8 9.3 3.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain HIT PF01230.18 gi|385777364|ref|YP_005649932.1| - 8.9e-26 90.2 0.0 1.2e-25 89.9 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|385777364|ref|YP_005649932.1| - 1.4e-13 51.1 0.1 2.3e-13 50.3 0.0 1.4 1 1 1 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|385777364|ref|YP_005649932.1| - 0.012 15.2 0.1 0.016 14.8 0.0 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 Asp_protease_2 PF13650.1 gi|385777365|ref|YP_005649933.1| - 3.9e-05 24.0 0.0 5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|385777365|ref|YP_005649933.1| - 0.054 13.3 0.0 0.14 12.0 0.0 1.7 2 1 0 2 2 2 0 gag-polyprotein putative aspartyl protease RHH_1 PF01402.16 gi|385777366|ref|YP_005649934.1| - 0.0024 17.6 0.2 0.0045 16.8 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family SNARE_assoc PF09335.6 gi|385777368|ref|YP_005649936.1| - 2.9e-06 27.4 6.2 2.9e-06 27.4 4.3 1.9 2 1 0 2 2 2 1 SNARE associated Golgi protein NUDIX PF00293.23 gi|385777369|ref|YP_005649937.1| - 1.9e-15 56.7 0.0 2.4e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain D123 PF07065.9 gi|385777370|ref|YP_005649938.1| - 0.093 11.7 0.2 0.11 11.6 0.1 1.0 1 0 0 1 1 1 0 D123 Chlor_dismutase PF06778.7 gi|385777371|ref|YP_005649939.1| - 4.1e-62 209.3 0.8 5.2e-62 209.0 0.6 1.1 1 0 0 1 1 1 1 Chlorite dismutase NTPase_1 PF03266.10 gi|385777373|ref|YP_005649941.1| - 5.3e-50 169.3 0.2 6.5e-50 169.1 0.1 1.1 1 0 0 1 1 1 1 NTPase AAA PF00004.24 gi|385777373|ref|YP_005649941.1| - 8e-06 26.0 0.0 1.1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385777373|ref|YP_005649941.1| - 2e-05 24.7 0.1 5.7e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|385777373|ref|YP_005649941.1| - 3.5e-05 23.5 0.3 0.00041 20.0 0.0 2.5 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|385777373|ref|YP_005649941.1| - 0.00015 20.6 0.0 0.00033 19.5 0.0 1.6 2 0 0 2 2 2 1 ArgK protein AAA_18 PF13238.1 gi|385777373|ref|YP_005649941.1| - 0.00017 21.9 0.1 0.00025 21.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385777373|ref|YP_005649941.1| - 0.00027 21.7 0.1 0.00048 20.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385777373|ref|YP_005649941.1| - 0.00041 20.1 0.3 0.0008 19.1 0.2 1.4 1 1 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|385777373|ref|YP_005649941.1| - 0.00044 19.7 0.0 0.8 9.0 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein CbiA PF01656.18 gi|385777373|ref|YP_005649941.1| - 0.00082 18.8 0.4 0.002 17.5 0.3 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain RuvB_N PF05496.7 gi|385777373|ref|YP_005649941.1| - 0.0017 17.4 0.0 0.4 9.6 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF2075 PF09848.4 gi|385777373|ref|YP_005649941.1| - 0.0021 17.0 0.1 0.0022 17.0 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Pox_A32 PF04665.7 gi|385777373|ref|YP_005649941.1| - 0.0023 17.2 0.1 0.078 12.2 0.0 2.1 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_28 PF13521.1 gi|385777373|ref|YP_005649941.1| - 0.0024 17.8 0.0 0.0034 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|385777373|ref|YP_005649941.1| - 0.0026 17.6 0.3 0.031 14.1 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385777373|ref|YP_005649941.1| - 0.003 17.2 0.0 0.0095 15.6 0.0 1.9 3 0 0 3 3 1 1 Part of AAA domain AAA_10 PF12846.2 gi|385777373|ref|YP_005649941.1| - 0.0034 16.8 0.0 0.0041 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|385777373|ref|YP_005649941.1| - 0.0035 17.3 0.0 0.0056 16.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_26 PF13500.1 gi|385777373|ref|YP_005649941.1| - 0.0057 16.2 0.0 0.012 15.2 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_24 PF13479.1 gi|385777373|ref|YP_005649941.1| - 0.0098 15.4 0.5 0.051 13.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|385777373|ref|YP_005649941.1| - 0.013 15.2 0.1 0.48 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|385777373|ref|YP_005649941.1| - 0.013 15.4 1.6 0.042 13.8 1.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|385777373|ref|YP_005649941.1| - 0.014 15.0 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain APS_kinase PF01583.15 gi|385777373|ref|YP_005649941.1| - 0.015 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.1 gi|385777373|ref|YP_005649941.1| - 0.015 14.8 0.0 0.039 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|385777373|ref|YP_005649941.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ABC_tran PF00005.22 gi|385777373|ref|YP_005649941.1| - 0.015 15.5 0.5 0.05 13.9 0.2 2.1 2 1 0 2 2 1 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|385777373|ref|YP_005649941.1| - 0.023 14.2 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family cobW PF02492.14 gi|385777373|ref|YP_005649941.1| - 0.027 13.8 0.3 0.052 12.9 0.1 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|385777373|ref|YP_005649941.1| - 0.03 13.6 0.1 0.056 12.7 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B KaiC PF06745.8 gi|385777373|ref|YP_005649941.1| - 0.038 13.1 0.2 0.072 12.2 0.1 1.5 1 1 0 1 1 1 0 KaiC ArsA_ATPase PF02374.10 gi|385777373|ref|YP_005649941.1| - 0.04 12.9 0.0 0.15 11.1 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase KAP_NTPase PF07693.9 gi|385777373|ref|YP_005649941.1| - 0.041 12.8 0.0 0.041 12.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_25 PF13481.1 gi|385777373|ref|YP_005649941.1| - 0.043 13.2 0.0 0.049 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|385777373|ref|YP_005649941.1| - 0.043 12.6 0.0 0.047 12.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DnaB_C PF03796.10 gi|385777373|ref|YP_005649941.1| - 0.047 12.5 0.0 0.055 12.3 0.0 1.1 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain RNA_helicase PF00910.17 gi|385777373|ref|YP_005649941.1| - 0.048 13.8 0.0 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|385777373|ref|YP_005649941.1| - 0.049 14.1 0.0 0.13 12.7 0.0 1.8 2 1 0 2 2 2 0 Miro-like protein Arf PF00025.16 gi|385777373|ref|YP_005649941.1| - 0.05 12.8 0.1 0.11 11.6 0.0 1.6 2 0 0 2 2 2 0 ADP-ribosylation factor family Sigma54_activat PF00158.21 gi|385777373|ref|YP_005649941.1| - 0.091 12.2 0.0 0.86 9.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SE PF00437.15 gi|385777373|ref|YP_005649941.1| - 0.095 11.5 0.5 0.36 9.6 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_11 PF13086.1 gi|385777373|ref|YP_005649941.1| - 0.099 12.2 0.0 0.19 11.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain Ras PF00071.17 gi|385777373|ref|YP_005649941.1| - 0.13 11.6 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Ras family AAA_29 PF13555.1 gi|385777373|ref|YP_005649941.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385777373|ref|YP_005649941.1| - 0.29 11.4 1.5 0.51 10.6 1.1 1.5 1 1 0 1 1 1 0 AAA domain NAD_synthase PF02540.12 gi|385777374|ref|YP_005649942.1| - 3.1e-73 245.6 0.0 3.6e-73 245.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|385777374|ref|YP_005649942.1| - 2.8e-05 22.8 0.0 0.0013 17.3 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Sigma70_r4 PF04545.11 gi|385777374|ref|YP_005649942.1| - 0.02 14.2 0.1 0.055 12.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 ThiI PF02568.9 gi|385777374|ref|YP_005649942.1| - 0.067 12.6 0.1 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CN_hydrolase PF00795.17 gi|385777375|ref|YP_005649943.1| - 3.6e-11 42.7 0.0 4.9e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF3929 PF13066.1 gi|385777375|ref|YP_005649943.1| - 0.91 9.3 3.8 11 5.9 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3929) DUF1620 PF07774.8 gi|385777376|ref|YP_005649944.1| - 4.9 6.3 6.2 0.59 9.3 1.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1620) HTH_5 PF01022.15 gi|385777377|ref|YP_005649945.1| - 2.1e-11 43.2 0.0 3.5e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|385777377|ref|YP_005649945.1| - 1.9e-10 40.3 0.0 2.5e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385777377|ref|YP_005649945.1| - 2.3e-08 33.5 0.1 3.6e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|385777377|ref|YP_005649945.1| - 3e-07 29.7 0.0 5.5e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385777377|ref|YP_005649945.1| - 6.1e-05 22.5 0.0 9.6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|385777377|ref|YP_005649945.1| - 6.6e-05 22.6 2.4 0.017 14.9 0.2 2.1 1 1 1 2 2 2 2 Winged helix-turn-helix HTH_12 PF08461.5 gi|385777377|ref|YP_005649945.1| - 0.00071 19.2 0.4 0.0018 17.9 0.2 1.9 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain ArsR PF09824.4 gi|385777377|ref|YP_005649945.1| - 0.00081 18.7 0.2 0.001 18.4 0.1 1.2 1 1 0 1 1 1 1 ArsR transcriptional regulator Phage_rep_org_N PF09681.5 gi|385777377|ref|YP_005649945.1| - 0.0012 18.3 0.1 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) MarR PF01047.17 gi|385777377|ref|YP_005649945.1| - 0.0016 18.0 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|385777377|ref|YP_005649945.1| - 0.0022 17.6 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|385777377|ref|YP_005649945.1| - 0.0078 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|385777377|ref|YP_005649945.1| - 0.0082 16.1 0.2 0.043 13.8 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|385777377|ref|YP_005649945.1| - 0.0083 16.2 0.2 0.011 15.8 0.1 1.4 1 1 0 1 1 1 1 Penicillinase repressor HTH_10 PF04967.7 gi|385777377|ref|YP_005649945.1| - 0.0086 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|385777377|ref|YP_005649945.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|385777377|ref|YP_005649945.1| - 0.013 15.4 1.0 0.016 15.1 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain MazG-like PF12643.2 gi|385777377|ref|YP_005649945.1| - 0.017 15.0 0.1 0.025 14.5 0.1 1.5 1 1 0 1 1 1 0 MazG-like family TFIIE_alpha PF02002.12 gi|385777377|ref|YP_005649945.1| - 0.024 14.1 1.2 0.029 13.8 0.8 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GerE PF00196.14 gi|385777377|ref|YP_005649945.1| - 0.028 13.7 0.0 0.047 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Orthopox_F6 PF06601.7 gi|385777377|ref|YP_005649945.1| - 0.037 13.9 0.0 1.7 8.6 0.0 2.3 2 0 0 2 2 2 0 Orthopoxvirus F6 protein HTH_34 PF13601.1 gi|385777377|ref|YP_005649945.1| - 0.045 13.7 0.1 0.069 13.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2089 PF09862.4 gi|385777377|ref|YP_005649945.1| - 0.064 13.0 0.6 0.21 11.4 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) HTH_9 PF08221.6 gi|385777377|ref|YP_005649945.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF340 PF03956.8 gi|385777378|ref|YP_005649946.1| - 2.8e-42 144.1 18.1 2.8e-42 144.1 12.6 2.1 2 0 0 2 2 2 2 Membrane protein of unknown function (DUF340) Per1 PF04080.8 gi|385777378|ref|YP_005649946.1| - 3.4 7.0 7.7 0.19 11.0 1.9 1.5 2 0 0 2 2 2 0 Per1-like TMEM154 PF15102.1 gi|385777379|ref|YP_005649947.1| - 0.14 11.8 0.5 0.3 10.8 0.4 1.5 1 0 0 1 1 1 0 TMEM154 protein family YolD PF08863.5 gi|385777379|ref|YP_005649947.1| - 1.7 8.5 5.2 2.2 8.1 0.4 2.5 2 1 0 2 2 2 0 YolD-like protein Yip1 PF04893.12 gi|385777379|ref|YP_005649947.1| - 2.6 7.4 8.2 3 7.3 0.6 2.3 2 0 0 2 2 2 0 Yip1 domain Methyltransf_31 PF13847.1 gi|385777380|ref|YP_005649948.1| - 5.5e-14 52.0 0.2 7e-14 51.6 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385777380|ref|YP_005649948.1| - 3.3e-12 46.9 0.0 6.8e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385777380|ref|YP_005649948.1| - 2.6e-11 43.7 0.0 4.5e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385777380|ref|YP_005649948.1| - 2e-10 40.6 0.0 3.2e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385777380|ref|YP_005649948.1| - 5e-10 39.7 0.0 8.4e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385777380|ref|YP_005649948.1| - 2.6e-08 33.8 0.0 3.8e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385777380|ref|YP_005649948.1| - 5.4e-08 33.2 0.0 9.4e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|385777380|ref|YP_005649948.1| - 2.6e-07 30.0 0.1 3.8e-07 29.4 0.1 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|385777380|ref|YP_005649948.1| - 8.1e-07 28.5 0.0 1.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|385777380|ref|YP_005649948.1| - 8.1e-05 21.8 0.0 0.00012 21.2 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|385777380|ref|YP_005649948.1| - 0.00012 21.5 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MethyltransfD12 PF02086.10 gi|385777380|ref|YP_005649948.1| - 0.00012 21.6 1.9 0.00016 21.2 1.3 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase CMAS PF02353.15 gi|385777380|ref|YP_005649948.1| - 0.0014 17.7 0.2 0.0072 15.4 0.0 1.9 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase AdoMet_MTase PF07757.8 gi|385777380|ref|YP_005649948.1| - 0.0037 17.3 0.1 0.0097 16.0 0.1 1.7 1 1 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase TPMT PF05724.6 gi|385777380|ref|YP_005649948.1| - 0.0037 16.7 0.0 0.0054 16.1 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.7 gi|385777380|ref|YP_005649948.1| - 0.0039 16.5 0.1 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW tRNA_U5-meth_tr PF05958.6 gi|385777380|ref|YP_005649948.1| - 0.006 15.3 0.0 0.011 14.4 0.0 1.4 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.5 gi|385777380|ref|YP_005649948.1| - 0.016 14.7 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N2227 PF07942.7 gi|385777380|ref|YP_005649948.1| - 0.016 14.1 1.4 0.047 12.6 0.0 2.2 2 1 0 2 2 2 0 N2227-like protein RrnaAD PF00398.15 gi|385777380|ref|YP_005649948.1| - 0.017 14.1 0.0 0.037 13.0 0.0 1.6 1 1 1 2 2 2 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|385777380|ref|YP_005649948.1| - 0.041 13.0 0.0 0.067 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|385777380|ref|YP_005649948.1| - 0.049 12.5 0.1 0.067 12.0 0.1 1.2 1 0 0 1 1 1 0 DREV methyltransferase UPF0020 PF01170.13 gi|385777380|ref|YP_005649948.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 FmrO PF07091.6 gi|385777380|ref|YP_005649948.1| - 0.13 11.1 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Semialdhyde_dh PF01118.19 gi|385777381|ref|YP_005649949.1| - 2.9e-31 108.3 0.0 6.6e-31 107.1 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|385777381|ref|YP_005649949.1| - 4.5e-21 75.5 0.0 6.5e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DUF3584 PF12128.3 gi|385777383|ref|YP_005649951.1| - 0.12 9.7 0.1 0.14 9.4 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Pro-kuma_activ PF09286.6 gi|385777384|ref|YP_005649952.1| - 2.1e-10 40.8 0.0 3.9e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|385777384|ref|YP_005649952.1| - 3.9e-07 29.5 0.1 7.7e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Subtilase family Iso_dh PF00180.15 gi|385777385|ref|YP_005649953.1| - 1.4e-103 346.4 0.1 1.7e-103 346.2 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase