#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
TssO	PF17561.2	gi|227826412|ref|YP_002828191.1|	-	5.9	7.0	7.9	10	6.2	7.9	1.5	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssO
Cdc6_C	PF09079.11	gi|227826413|ref|YP_002828192.1|	-	2.7e-14	52.9	0.0	5.4e-14	51.9	0.0	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|227826413|ref|YP_002828192.1|	-	6.6e-07	29.7	0.0	1.3e-06	28.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|227826413|ref|YP_002828192.1|	-	1.8e-05	25.2	0.0	4.1e-05	24.0	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.7	gi|227826413|ref|YP_002828192.1|	-	0.0087	15.0	0.0	1	8.2	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
Sigma54_activat	PF00158.26	gi|227826413|ref|YP_002828192.1|	-	0.0091	15.7	0.0	0.024	14.4	0.0	1.7	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Acetyltransf_15	PF17013.5	gi|227826413|ref|YP_002828192.1|	-	0.069	12.6	0.1	0.12	11.8	0.1	1.4	1	0	0	1	1	1	0	Putative	acetyl-transferase
KNOX1	PF03790.13	gi|227826413|ref|YP_002828192.1|	-	0.12	12.1	0.0	0.57	10.0	0.0	2.0	2	0	0	2	2	2	0	KNOX1	domain
DUF4201	PF13870.6	gi|227826414|ref|YP_002828193.1|	-	0.00061	19.6	6.4	0.073	12.8	0.1	2.0	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4201)
DivIC	PF04977.15	gi|227826414|ref|YP_002828193.1|	-	0.0021	17.8	6.0	0.18	11.6	0.3	2.1	2	0	0	2	2	2	2	Septum	formation	initiator
FlaC_arch	PF05377.11	gi|227826414|ref|YP_002828193.1|	-	0.0034	17.8	7.4	0.026	14.9	0.3	2.2	2	0	0	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
TACC_C	PF05010.14	gi|227826414|ref|YP_002828193.1|	-	0.0061	16.4	5.7	0.027	14.2	0.9	2.0	2	0	0	2	2	2	1	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
BLOC1_2	PF10046.9	gi|227826414|ref|YP_002828193.1|	-	0.0077	16.5	4.1	0.9	9.9	0.8	2.1	2	0	0	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TMF_DNA_bd	PF12329.8	gi|227826414|ref|YP_002828193.1|	-	0.0089	16.0	13.4	0.035	14.1	0.5	2.1	2	0	0	2	2	2	1	TATA	element	modulatory	factor	1	DNA	binding
APG6_N	PF17675.1	gi|227826414|ref|YP_002828193.1|	-	0.011	16.2	7.5	0.82	10.2	1.9	2.1	2	0	0	2	2	2	0	Apg6	coiled-coil	region
NPV_P10	PF05531.12	gi|227826414|ref|YP_002828193.1|	-	0.012	16.1	0.2	1.7	9.2	0.2	2.1	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF2031	PF09592.10	gi|227826414|ref|YP_002828193.1|	-	0.014	14.9	0.6	0.014	14.9	0.6	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2031)
bZIP_1	PF00170.21	gi|227826414|ref|YP_002828193.1|	-	0.015	15.4	12.7	0.4	10.8	1.3	2.2	2	0	0	2	2	2	0	bZIP	transcription	factor
CEP209_CC5	PF16574.5	gi|227826414|ref|YP_002828193.1|	-	0.017	15.3	7.4	0.024	14.8	7.4	1.2	1	0	0	1	1	1	0	Coiled-coil	region	of	centrosome	protein	CE290
Spc24	PF08286.11	gi|227826414|ref|YP_002828193.1|	-	0.02	15.1	1.8	0.89	9.8	0.1	2.1	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
Occludin_ELL	PF07303.13	gi|227826414|ref|YP_002828193.1|	-	0.022	15.5	5.5	0.24	12.2	0.5	2.1	1	1	1	2	2	2	0	Occludin	homology	domain
Syntaxin-6_N	PF09177.11	gi|227826414|ref|YP_002828193.1|	-	0.026	15.0	1.1	7.9	7.1	0.1	2.2	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
CdvA	PF18822.1	gi|227826414|ref|YP_002828193.1|	-	0.03	14.1	6.8	1.6	8.5	0.2	2.2	2	0	0	2	2	2	0	CdvA-like	coiled-coil	domain
DUF1664	PF07889.12	gi|227826414|ref|YP_002828193.1|	-	0.033	14.2	0.2	6.1	6.9	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF4200	PF13863.6	gi|227826414|ref|YP_002828193.1|	-	0.036	14.5	8.5	0.6	10.5	0.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF4140	PF13600.6	gi|227826414|ref|YP_002828193.1|	-	0.04	14.4	3.6	3.2	8.3	0.2	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DHHA1	PF02272.19	gi|227826414|ref|YP_002828193.1|	-	0.044	14.2	0.2	0.044	14.2	0.2	1.9	1	1	1	2	2	2	0	DHHA1	domain
Prefoldin_2	PF01920.20	gi|227826414|ref|YP_002828193.1|	-	0.065	13.2	11.6	0.12	12.3	1.3	2.1	2	0	0	2	2	2	0	Prefoldin	subunit
SlyX	PF04102.12	gi|227826414|ref|YP_002828193.1|	-	0.065	13.9	2.2	1.2	9.8	0.1	2.2	2	0	0	2	2	2	0	SlyX
E2F_CC-MB	PF16421.5	gi|227826414|ref|YP_002828193.1|	-	0.07	13.5	2.1	2.9	8.3	0.3	2.2	2	0	0	2	2	2	0	E2F	transcription	factor	CC-MB	domain
ZapB	PF06005.12	gi|227826414|ref|YP_002828193.1|	-	0.072	13.5	10.1	0.13	12.7	0.5	2.4	2	1	0	2	2	2	0	Cell	division	protein	ZapB
Prefoldin	PF02996.17	gi|227826414|ref|YP_002828193.1|	-	0.072	13.0	7.7	0.65	9.9	0.2	2.1	2	0	0	2	2	2	0	Prefoldin	subunit
YabA	PF06156.13	gi|227826414|ref|YP_002828193.1|	-	0.082	13.6	6.3	0.97	10.1	0.4	2.0	1	1	1	2	2	2	0	Initiation	control	protein	YabA
PRKG1_interact	PF15898.5	gi|227826414|ref|YP_002828193.1|	-	0.082	13.8	7.9	0.15	13.0	7.9	1.5	1	1	0	1	1	1	0	cGMP-dependent	protein	kinase	interacting	domain
DASH_Dam1	PF08653.10	gi|227826414|ref|YP_002828193.1|	-	0.086	12.7	0.1	2	8.3	0.0	2.1	2	0	0	2	2	2	0	DASH	complex	subunit	Dam1
DUF4988	PF16378.5	gi|227826414|ref|YP_002828193.1|	-	0.1	12.3	0.9	4	7.1	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function
Sec34	PF04136.15	gi|227826414|ref|YP_002828193.1|	-	0.11	12.3	3.6	3.5	7.5	0.8	2.1	1	1	0	2	2	2	0	Sec34-like	family
DUF4349	PF14257.6	gi|227826414|ref|YP_002828193.1|	-	0.12	11.9	2.6	3.8	6.9	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4349)
Serine_rich	PF08824.10	gi|227826414|ref|YP_002828193.1|	-	0.15	12.0	2.0	3	7.8	0.1	2.1	2	0	0	2	2	2	0	Serine	rich	protein	interaction	domain
Nsp1_C	PF05064.13	gi|227826414|ref|YP_002828193.1|	-	0.15	11.8	4.2	3.8	7.3	0.6	2.1	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
Swi5	PF07061.11	gi|227826414|ref|YP_002828193.1|	-	0.16	12.1	5.9	0.25	11.4	0.3	2.1	2	0	0	2	2	2	0	Swi5
Cep57_CLD_2	PF14197.6	gi|227826414|ref|YP_002828193.1|	-	0.16	12.1	8.0	1.2	9.2	0.5	2.2	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
Laminin_II	PF06009.12	gi|227826414|ref|YP_002828193.1|	-	0.2	11.7	3.9	0.94	9.5	3.9	1.9	1	1	0	1	1	1	0	Laminin	Domain	II
Seryl_tRNA_N	PF02403.22	gi|227826414|ref|YP_002828193.1|	-	0.22	11.8	7.1	4.7	7.5	1.7	2.1	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
LRRFIP	PF09738.9	gi|227826414|ref|YP_002828193.1|	-	0.24	10.8	6.8	2.2	7.7	0.2	2.0	2	0	0	2	2	2	0	LRRFIP	family
MutS_IV	PF05190.18	gi|227826414|ref|YP_002828193.1|	-	0.25	11.7	8.6	0.49	10.8	0.7	2.1	2	0	0	2	2	2	0	MutS	family	domain	IV
Fmp27_WPPW	PF10359.9	gi|227826414|ref|YP_002828193.1|	-	0.27	10.0	4.0	0.86	8.4	4.0	1.7	1	1	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
FapA	PF03961.13	gi|227826414|ref|YP_002828193.1|	-	0.3	9.6	8.5	0.72	8.4	8.5	1.6	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
NBP1	PF08537.10	gi|227826414|ref|YP_002828193.1|	-	0.32	10.4	7.7	0.56	9.6	0.5	2.0	2	0	0	2	2	2	0	Fungal	Nap	binding	protein	NBP1
Fib_alpha	PF08702.10	gi|227826414|ref|YP_002828193.1|	-	0.43	10.8	4.0	9.6	6.4	1.0	2.0	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
AAA_23	PF13476.6	gi|227826414|ref|YP_002828193.1|	-	0.48	10.9	9.8	0.39	11.2	1.4	2.0	2	0	0	2	2	2	0	AAA	domain
DUF2205	PF10224.9	gi|227826414|ref|YP_002828193.1|	-	0.48	10.4	6.4	2.4	8.2	0.2	2.6	2	1	0	2	2	2	0	Short	coiled-coil	protein
Nup54	PF13874.6	gi|227826414|ref|YP_002828193.1|	-	0.49	10.5	3.9	3.4	7.8	0.5	2.1	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
Vac_Fusion	PF02346.16	gi|227826414|ref|YP_002828193.1|	-	0.51	10.0	5.4	1.4	8.6	0.2	2.3	2	0	0	2	2	2	0	Chordopoxvirus	multifunctional	envelope	protein	A27
XhlA	PF10779.9	gi|227826414|ref|YP_002828193.1|	-	0.66	10.2	8.6	0.58	10.4	0.2	2.4	2	0	0	2	2	2	0	Haemolysin	XhlA
UPF0449	PF15136.6	gi|227826414|ref|YP_002828193.1|	-	0.69	10.4	5.2	5.7	7.5	0.5	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
LMBR1	PF04791.16	gi|227826414|ref|YP_002828193.1|	-	0.81	8.5	2.4	0.95	8.3	2.4	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
Spc7	PF08317.11	gi|227826414|ref|YP_002828193.1|	-	1.2	8.0	9.6	6.1	5.6	9.6	1.8	1	1	0	1	1	1	0	Spc7	kinetochore	protein
CCDC-167	PF15188.6	gi|227826414|ref|YP_002828193.1|	-	3.4	8.1	12.7	16	5.9	12.7	2.0	1	1	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
PspB	PF06667.12	gi|227826414|ref|YP_002828193.1|	-	4.6	7.4	7.0	0.98	9.5	0.9	2.2	2	0	0	2	2	2	0	Phage	shock	protein	B
DUF3375	PF11855.8	gi|227826414|ref|YP_002828193.1|	-	5.2	5.9	8.6	0.18	10.7	0.8	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3375)
DUF5595	PF18077.1	gi|227826414|ref|YP_002828193.1|	-	7.1	6.8	12.3	5.1	7.2	1.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5595)
TM_helix	PF05552.12	gi|227826415|ref|YP_002828194.1|	-	4.9e-15	55.2	10.9	4.5e-08	33.0	0.1	5.4	7	0	0	7	7	7	2	Conserved	TM	helix
DUF4731	PF15875.5	gi|227826415|ref|YP_002828194.1|	-	0.22	11.7	3.1	2.2	8.6	0.7	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4731)
Pterin_4a	PF01329.19	gi|227826416|ref|YP_002828195.1|	-	1e-25	89.7	0.0	1.2e-25	89.5	0.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
DUF2724	PF10893.8	gi|227826416|ref|YP_002828195.1|	-	0.12	12.3	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2724)
HmuY	PF14064.6	gi|227826418|ref|YP_002828197.1|	-	0.14	12.3	0.0	0.34	11.1	0.0	1.6	1	0	0	1	1	1	0	HmuY	protein
TPR_1	PF00515.28	gi|227826419|ref|YP_002828198.1|	-	8.8e-28	95.0	27.3	3.4e-05	23.5	2.3	8.0	8	0	0	8	8	8	6	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|227826419|ref|YP_002828198.1|	-	1.2e-27	93.7	21.9	1.9e-05	24.4	1.1	8.1	6	2	1	8	8	8	7	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|227826419|ref|YP_002828198.1|	-	6.9e-19	68.2	7.0	5.8e-05	23.7	0.4	5.1	3	1	2	5	5	5	5	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|227826419|ref|YP_002828198.1|	-	6.3e-16	57.5	8.0	0.00013	22.1	0.1	5.9	6	0	0	6	6	5	3	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|227826419|ref|YP_002828198.1|	-	1.8e-15	56.3	21.1	0.00081	19.0	0.2	6.8	3	2	4	7	7	7	5	TPR	repeat
TPR_8	PF13181.6	gi|227826419|ref|YP_002828198.1|	-	2.2e-15	55.5	22.3	0.0048	17.0	0.1	6.8	7	0	0	7	7	7	5	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|227826419|ref|YP_002828198.1|	-	8.3e-14	51.9	17.0	0.013	16.0	0.3	6.3	2	2	3	6	6	6	6	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|227826419|ref|YP_002828198.1|	-	1.4e-13	50.9	13.0	0.0018	18.5	0.2	6.1	3	2	1	4	4	4	3	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|227826419|ref|YP_002828198.1|	-	6.3e-13	48.8	13.1	0.00013	22.1	1.2	5.2	1	1	5	6	6	6	6	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_9	PF13371.6	gi|227826419|ref|YP_002828198.1|	-	1.6e-11	44.2	0.2	0.0074	16.4	0.1	5.0	2	1	3	5	5	5	3	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|227826419|ref|YP_002828198.1|	-	3.5e-11	43.0	11.1	0.037	14.8	0.2	7.8	3	2	5	8	8	8	3	Tetratricopeptide	repeat
SRP_TPR_like	PF17004.5	gi|227826419|ref|YP_002828198.1|	-	1.7e-10	40.9	14.3	4.3e-05	23.5	1.2	3.7	1	1	2	3	3	3	3	Putative	TPR-like	repeat
TPR_6	PF13174.6	gi|227826419|ref|YP_002828198.1|	-	1.5e-09	37.9	17.1	2.2	9.1	0.2	8.1	8	0	0	8	8	8	1	Tetratricopeptide	repeat
NARP1	PF12569.8	gi|227826419|ref|YP_002828198.1|	-	1.3e-08	34.2	0.7	0.00061	18.8	0.0	3.4	2	1	1	3	3	3	2	NMDA	receptor-regulated	protein	1
Fis1_TPR_C	PF14853.6	gi|227826419|ref|YP_002828198.1|	-	1.5e-06	28.2	10.4	0.017	15.2	0.4	4.8	5	1	1	6	6	5	2	Fis1	C-terminal	tetratricopeptide	repeat
TPR_7	PF13176.6	gi|227826419|ref|YP_002828198.1|	-	2.6e-06	27.0	5.4	3.7	7.8	0.1	6.0	6	0	0	6	6	6	1	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|227826419|ref|YP_002828198.1|	-	9.9e-06	25.3	7.1	0.079	12.9	0.0	5.4	7	0	0	7	7	7	2	Tetratricopeptide	repeat
Alkyl_sulf_dimr	PF14863.6	gi|227826419|ref|YP_002828198.1|	-	0.00036	21.0	0.7	0.0032	17.9	0.0	2.6	2	2	1	3	3	3	1	Alkyl	sulfatase	dimerisation
BTAD	PF03704.17	gi|227826419|ref|YP_002828198.1|	-	0.00039	20.9	0.1	0.081	13.4	0.0	2.8	1	1	2	3	3	3	1	Bacterial	transcriptional	activator	domain
TPR_MalT	PF17874.1	gi|227826419|ref|YP_002828198.1|	-	0.00066	19.2	0.3	0.53	9.6	0.0	3.1	2	1	0	2	2	2	1	MalT-like	TPR	region
DUF3856	PF12968.7	gi|227826419|ref|YP_002828198.1|	-	0.00079	19.5	2.8	0.72	9.9	0.1	4.4	2	1	2	4	4	4	1	Domain	of	Unknown	Function	(DUF3856)
TPR_21	PF09976.9	gi|227826419|ref|YP_002828198.1|	-	0.0013	18.5	6.0	0.091	12.5	0.3	3.4	2	2	1	3	3	3	2	Tetratricopeptide	repeat-like	domain
TPR_4	PF07721.14	gi|227826419|ref|YP_002828198.1|	-	0.0013	19.1	0.0	44	5.1	0.1	4.8	5	0	0	5	5	5	0	Tetratricopeptide	repeat
HrpB1_HrpK	PF09613.10	gi|227826419|ref|YP_002828198.1|	-	0.011	15.3	0.0	0.083	12.5	0.0	2.3	2	1	1	3	3	3	0	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
DUF627	PF04781.12	gi|227826419|ref|YP_002828198.1|	-	0.012	15.6	0.3	3.6	7.6	0.0	3.7	3	2	1	4	4	4	0	Protein	of	unknown	function	(DUF627)
Coatomer_E	PF04733.14	gi|227826419|ref|YP_002828198.1|	-	0.012	15.0	3.0	0.033	13.6	0.5	2.6	2	1	0	2	2	2	0	Coatomer	epsilon	subunit
Wzy_C_2	PF11846.8	gi|227826419|ref|YP_002828198.1|	-	0.037	13.9	0.2	0.63	9.9	0.0	2.2	1	1	1	2	2	2	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
RPN7	PF10602.9	gi|227826419|ref|YP_002828198.1|	-	0.048	13.4	2.0	1.5	8.5	0.7	3.4	1	1	1	2	2	2	0	26S	proteasome	subunit	RPN7
PknG_TPR	PF16918.5	gi|227826419|ref|YP_002828198.1|	-	0.11	11.2	0.0	2.3	6.9	0.0	2.2	2	0	0	2	2	2	0	Protein	kinase	G	tetratricopeptide	repeat
SHNi-TPR	PF10516.9	gi|227826419|ref|YP_002828198.1|	-	0.83	9.2	4.1	45	3.6	0.0	4.8	6	0	0	6	6	6	0	SHNi-TPR
GGACT	PF06094.12	gi|227826420|ref|YP_002828199.1|	-	1.2e-29	103.3	7.5	1.7e-20	73.8	2.3	2.1	2	0	0	2	2	2	2	Gamma-glutamyl	cyclotransferase,	AIG2-like
AIG2_2	PF13772.6	gi|227826420|ref|YP_002828199.1|	-	1.1e-11	45.0	2.2	7.1e-07	29.5	0.1	2.5	2	0	0	2	2	2	2	AIG2-like	family
NfeD	PF01957.18	gi|227826422|ref|YP_002828201.1|	-	1.2e-13	51.2	3.5	2.3e-13	50.3	3.5	1.5	1	1	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
Thermopsin	PF05317.11	gi|227826423|ref|YP_002828202.1|	-	7.4e-27	94.5	10.0	7.4e-27	94.5	10.0	2.0	2	1	0	2	2	2	1	Thermopsin
Big_1	PF02369.16	gi|227826423|ref|YP_002828202.1|	-	6.1	6.9	6.6	0.96	9.5	0.2	2.3	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	1)
Band_7	PF01145.25	gi|227826424|ref|YP_002828203.1|	-	3.1e-38	131.5	3.0	4.5e-38	131.0	3.0	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|227826424|ref|YP_002828203.1|	-	0.0012	18.5	0.2	0.0022	17.8	0.2	1.6	2	0	0	2	2	2	1	SPFH	domain-Band	7	family
NurA	PF09376.10	gi|227826425|ref|YP_002828204.1|	-	7.8e-14	52.0	4.6	1.1e-13	51.5	4.6	1.2	1	0	0	1	1	1	1	NurA	domain
DUF4201	PF13870.6	gi|227826426|ref|YP_002828205.1|	-	0.0015	18.3	12.5	0.0015	18.3	12.5	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4201)
HTH_7	PF02796.15	gi|227826426|ref|YP_002828205.1|	-	0.02	15.0	0.6	3.1	8.0	0.1	2.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_5	PF01022.20	gi|227826426|ref|YP_002828205.1|	-	0.027	14.3	0.7	0.027	14.3	0.7	2.9	4	0	0	4	4	3	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|227826426|ref|YP_002828205.1|	-	0.04	13.8	1.6	7.7	6.5	0.0	2.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
BMFP	PF04380.13	gi|227826426|ref|YP_002828205.1|	-	0.15	12.6	5.3	0.16	12.5	0.6	3.0	3	0	0	3	3	2	0	Membrane	fusogenic	activity
Allexi_40kDa	PF05549.11	gi|227826426|ref|YP_002828205.1|	-	0.2	11.2	15.6	0.1	12.1	5.4	2.6	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
Exonuc_VII_L	PF02601.15	gi|227826426|ref|YP_002828205.1|	-	0.79	9.2	13.1	24	4.4	13.1	2.0	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
HTH_11	PF08279.12	gi|227826426|ref|YP_002828205.1|	-	0.85	9.6	5.3	0.7	9.9	0.8	3.1	2	0	0	2	2	2	0	HTH	domain
NPV_P10	PF05531.12	gi|227826426|ref|YP_002828205.1|	-	0.88	10.1	14.7	7.7	7.1	4.5	3.7	1	1	2	3	3	3	0	Nucleopolyhedrovirus	P10	protein
DUF4250	PF14056.6	gi|227826426|ref|YP_002828205.1|	-	1	9.4	8.8	0.16	11.9	0.8	3.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4250)
Latarcin	PF10279.9	gi|227826426|ref|YP_002828205.1|	-	1.1	9.8	12.8	4.1	7.9	2.9	3.5	1	1	2	3	3	3	0	Latarcin	precursor
Prominin	PF05478.11	gi|227826426|ref|YP_002828205.1|	-	1.5	6.7	17.4	0.054	11.5	10.1	1.8	1	1	1	2	2	2	0	Prominin
GARP	PF16731.5	gi|227826426|ref|YP_002828205.1|	-	1.6	8.4	7.9	4.7	6.9	2.0	3.0	1	1	3	4	4	4	0	Glutamic	acid/alanine-rich	protein	of	Trypanosoma
CHD5	PF04420.14	gi|227826426|ref|YP_002828205.1|	-	1.8	8.4	7.4	2.9	7.7	5.2	2.3	1	1	1	2	2	2	0	CHD5-like	protein
LMBR1	PF04791.16	gi|227826426|ref|YP_002828205.1|	-	1.9	7.3	11.6	2.4	7.0	11.6	1.3	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
DUF4349	PF14257.6	gi|227826426|ref|YP_002828205.1|	-	2.4	7.6	8.5	1.6	8.1	6.5	1.7	2	1	0	2	2	1	0	Domain	of	unknown	function	(DUF4349)
DUF745	PF05335.13	gi|227826426|ref|YP_002828205.1|	-	2.7	7.7	5.8	1.7	8.3	2.9	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF745)
BLOC1_2	PF10046.9	gi|227826426|ref|YP_002828205.1|	-	3.3	8.1	31.8	0.32	11.3	9.2	3.8	1	1	1	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2203	PF09969.9	gi|227826426|ref|YP_002828205.1|	-	5.3	7.8	13.6	1.7	9.4	3.5	2.9	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
Bcr-Abl_Oligo	PF09036.10	gi|227826426|ref|YP_002828205.1|	-	5.4	7.1	7.9	11	6.0	0.2	3.4	1	1	2	3	3	3	0	Bcr-Abl	oncoprotein	oligomerisation	domain
FliD_N	PF02465.18	gi|227826426|ref|YP_002828205.1|	-	5.9	7.7	10.5	4e+02	1.8	10.5	3.2	1	1	0	1	1	1	0	Flagellar	hook-associated	protein	2	N-terminus
ISG65-75	PF11727.8	gi|227826426|ref|YP_002828205.1|	-	6.9	5.8	12.7	6.9	5.8	2.5	2.2	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
MerR-DNA-bind	PF09278.11	gi|227826426|ref|YP_002828205.1|	-	8.5	7.0	9.3	9.4	6.9	0.6	3.8	3	1	1	4	4	3	0	MerR,	DNA	binding
DUF1451	PF07295.11	gi|227826426|ref|YP_002828205.1|	-	8.7	6.4	9.9	2.2	8.3	5.4	2.2	2	1	0	2	2	2	0	Zinc-ribbon	containing	domain
Tropomyosin_1	PF12718.7	gi|227826426|ref|YP_002828205.1|	-	9.5	6.4	30.7	0.14	12.3	15.9	3.3	2	2	1	3	3	3	0	Tropomyosin	like
LUC7	PF03194.15	gi|227826426|ref|YP_002828205.1|	-	9.8	5.8	16.9	39	3.8	16.9	2.0	1	1	0	1	1	1	0	LUC7	N_terminus
KAP_NTPase	PF07693.14	gi|227826427|ref|YP_002828206.1|	-	0.00028	20.2	0.0	0.00071	18.9	0.0	1.8	1	0	0	1	1	1	1	KAP	family	P-loop	domain
RPAP3_C	PF13877.6	gi|227826427|ref|YP_002828206.1|	-	0.0063	17.0	0.2	0.063	13.8	0.1	2.8	2	0	0	2	2	2	1	Potential	Monad-binding	region	of	RPAP3
DUF1539	PF07560.11	gi|227826427|ref|YP_002828206.1|	-	0.0092	16.1	5.6	0.24	11.5	0.1	4.2	4	1	0	4	4	4	1	Domain	of	Unknown	Function	(DUF1539)
FliD_N	PF02465.18	gi|227826427|ref|YP_002828206.1|	-	0.23	12.2	2.5	9.2	7.0	0.2	3.8	3	0	0	3	3	3	0	Flagellar	hook-associated	protein	2	N-terminus
WGG	PF10273.9	gi|227826427|ref|YP_002828206.1|	-	0.26	12.0	2.2	1.7	9.4	0.0	3.4	4	0	0	4	4	3	0	Pre-rRNA-processing	protein	TSR2
DUF948	PF06103.11	gi|227826427|ref|YP_002828206.1|	-	0.27	11.5	8.0	17	5.8	1.6	4.6	4	1	0	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
COG2	PF06148.11	gi|227826427|ref|YP_002828206.1|	-	0.48	10.5	12.0	0.27	11.3	0.4	4.0	3	1	1	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Syntaxin-6_N	PF09177.11	gi|227826427|ref|YP_002828206.1|	-	0.86	10.2	13.0	6.6	7.3	5.8	4.7	3	1	0	3	3	3	0	Syntaxin	6,	N-terminal
SKA2	PF16740.5	gi|227826427|ref|YP_002828206.1|	-	1.1	9.0	7.2	7.9	6.3	0.4	3.6	3	0	0	3	3	3	0	Spindle	and	kinetochore-associated	protein	2
DUF848	PF05852.11	gi|227826427|ref|YP_002828206.1|	-	1.2	9.2	17.4	0.069	13.3	5.1	4.1	5	0	0	5	5	5	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Laminin_II	PF06009.12	gi|227826427|ref|YP_002828206.1|	-	1.8	8.6	13.0	0.86	9.6	2.4	3.5	3	0	0	3	3	3	0	Laminin	Domain	II
FliS	PF02561.14	gi|227826427|ref|YP_002828206.1|	-	9	6.6	9.4	1	9.6	1.7	3.4	3	0	0	3	3	3	0	Flagellar	protein	FliS
DUF87	PF01935.17	gi|227826428|ref|YP_002828207.1|	-	2.5e-42	145.5	1.2	4.5e-42	144.7	1.2	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|227826428|ref|YP_002828207.1|	-	0.00031	21.0	0.1	0.41	10.9	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|227826428|ref|YP_002828207.1|	-	0.0037	16.2	0.6	0.024	13.6	0.0	2.2	3	0	0	3	3	3	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|227826428|ref|YP_002828207.1|	-	0.011	15.2	0.0	0.049	13.0	0.0	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DUF771	PF05595.11	gi|227826428|ref|YP_002828207.1|	-	0.11	12.5	0.1	0.77	9.8	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF771)
DUF5591	PF17884.1	gi|227826429|ref|YP_002828208.1|	-	2.6e-20	72.9	1.3	3.3e-20	72.5	1.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
DUF3389	PF11869.8	gi|227826431|ref|YP_002828210.1|	-	0.0051	17.0	0.0	0.082	13.1	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3389)
Thioredox_DsbH	PF03190.15	gi|227826432|ref|YP_002828211.1|	-	4.7e-61	205.5	0.0	8.6e-61	204.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|227826432|ref|YP_002828211.1|	-	2.5e-14	53.2	0.0	4.5e-14	52.4	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|227826432|ref|YP_002828211.1|	-	0.0066	16.9	0.0	0.014	15.9	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.20	gi|227826432|ref|YP_002828211.1|	-	0.016	15.2	0.1	0.033	14.2	0.1	1.4	1	0	0	1	1	1	0	Thioredoxin
adh_short_C2	PF13561.6	gi|227826433|ref|YP_002828212.1|	-	2e-29	102.8	0.0	2.7e-29	102.4	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227826433|ref|YP_002828212.1|	-	2.3e-26	92.4	0.1	2.9e-26	92.1	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227826433|ref|YP_002828212.1|	-	1.5e-05	25.0	0.4	5.7e-05	23.1	0.4	1.8	1	1	0	1	1	1	1	KR	domain
ADH_zinc_N	PF00107.26	gi|227826433|ref|YP_002828212.1|	-	0.0051	16.8	0.1	0.13	12.2	0.0	2.3	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.6	gi|227826433|ref|YP_002828212.1|	-	0.028	14.3	0.0	0.036	13.9	0.0	1.5	1	1	0	1	1	1	0	NAD(P)H-binding
DUF460	PF04312.13	gi|227826433|ref|YP_002828212.1|	-	0.09	12.5	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
Zw10	PF06248.13	gi|227826433|ref|YP_002828212.1|	-	0.16	10.5	0.0	0.2	10.2	0.0	1.1	1	0	0	1	1	1	0	Centromere/kinetochore	Zw10
3HCDH_N	PF02737.18	gi|227826433|ref|YP_002828212.1|	-	0.17	11.7	0.1	0.36	10.7	0.1	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TENA_THI-4	PF03070.16	gi|227826434|ref|YP_002828213.1|	-	2.8e-29	102.5	0.2	3.3e-29	102.2	0.2	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
NucS	PF01939.16	gi|227826436|ref|YP_002828215.1|	-	2.7e-61	206.8	0.2	3.2e-61	206.6	0.2	1.0	1	0	0	1	1	1	1	Endonuclease	NucS
UPF0102	PF02021.17	gi|227826436|ref|YP_002828215.1|	-	0.00015	22.0	0.7	0.0035	17.5	0.0	3.1	2	1	2	4	4	4	1	Uncharacterised	protein	family	UPF0102
Cas_Cas4	PF01930.17	gi|227826436|ref|YP_002828215.1|	-	0.001	19.2	0.1	0.0018	18.4	0.1	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_9	PF08011.11	gi|227826436|ref|YP_002828215.1|	-	0.032	14.2	0.0	0.078	12.9	0.0	1.7	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
PDDEXK_10	PF07788.11	gi|227826436|ref|YP_002828215.1|	-	0.064	13.2	0.6	0.26	11.3	0.1	2.3	2	0	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
Glycos_transf_2	PF00535.26	gi|227826437|ref|YP_002828216.1|	-	9.1e-15	54.9	0.0	1.7e-14	54.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|227826437|ref|YP_002828216.1|	-	2e-13	50.2	0.0	2.9e-13	49.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_3	PF13641.6	gi|227826437|ref|YP_002828216.1|	-	1.8e-10	41.1	0.0	8.3e-10	38.9	0.0	1.8	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Adeno_E3B	PF03376.14	gi|227826437|ref|YP_002828216.1|	-	3.2	8.1	6.4	4.3	7.6	4.7	2.0	1	1	1	2	2	2	0	Adenovirus	E3B	protein
Radical_SAM	PF04055.21	gi|227826439|ref|YP_002828218.1|	-	2.4e-12	47.6	0.2	1.5e-11	44.9	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227826439|ref|YP_002828218.1|	-	6.7e-09	36.1	0.0	1.3e-08	35.2	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|227826439|ref|YP_002828218.1|	-	1e-05	25.6	0.0	2.1e-05	24.6	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
PLDc_2	PF13091.6	gi|227826440|ref|YP_002828219.1|	-	0.0071	16.2	1.1	0.011	15.7	0.4	1.7	2	0	0	2	2	2	1	PLD-like	domain
Flo11	PF10182.9	gi|227826440|ref|YP_002828219.1|	-	0.14	12.3	0.1	0.27	11.3	0.1	1.4	1	0	0	1	1	1	0	Flo11	domain
DUF2201	PF09967.9	gi|227826440|ref|YP_002828219.1|	-	0.32	11.1	1.6	0.39	10.9	0.4	1.7	2	0	0	2	2	2	0	VWA-like	domain	(DUF2201)
Aminotran_5	PF00266.19	gi|227826443|ref|YP_002828222.1|	-	9.8e-48	163.0	0.0	2.1e-47	161.9	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|227826443|ref|YP_002828222.1|	-	6e-05	21.7	0.1	9.2e-05	21.1	0.1	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|227826443|ref|YP_002828222.1|	-	0.0036	16.6	0.1	0.0096	15.3	0.0	1.6	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
AMP-binding	PF00501.28	gi|227826444|ref|YP_002828223.1|	-	4.5e-69	233.1	0.0	5.7e-69	232.7	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227826444|ref|YP_002828223.1|	-	5.7e-16	59.3	0.3	1.1e-15	58.4	0.3	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|227826444|ref|YP_002828223.1|	-	1.6e-15	56.8	1.7	1.6e-15	56.8	1.7	1.8	2	0	0	2	2	2	1	Acetyl-coenzyme	A	synthetase	N-terminus
ScsC_N	PF18312.1	gi|227826444|ref|YP_002828223.1|	-	0.39	10.6	1.6	0.92	9.4	1.6	1.6	1	0	0	1	1	1	0	Copper	resistance	protein	ScsC	N-terminal	domain
PIN_6	PF17146.4	gi|227826445|ref|YP_002828224.1|	-	9.7e-19	67.7	0.6	1.3e-18	67.2	0.6	1.2	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
zinc_ribbon_15	PF17032.5	gi|227826445|ref|YP_002828224.1|	-	0.0034	18.1	0.4	0.0054	17.5	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	family
DZR	PF12773.7	gi|227826445|ref|YP_002828224.1|	-	0.0047	16.9	0.1	0.0067	16.4	0.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|227826445|ref|YP_002828224.1|	-	0.0087	16.1	1.1	0.014	15.4	1.1	1.6	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|227826445|ref|YP_002828224.1|	-	0.02	15.0	4.1	0.046	13.8	4.1	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
Ground-like	PF04155.18	gi|227826445|ref|YP_002828224.1|	-	0.046	14.4	2.0	0.084	13.5	0.7	1.9	1	1	1	2	2	2	0	Ground-like	domain
Zn_ribbon_SprT	PF17283.2	gi|227826445|ref|YP_002828224.1|	-	0.051	13.5	2.9	0.28	11.1	2.9	2.0	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
DUF1272	PF06906.11	gi|227826445|ref|YP_002828224.1|	-	0.056	13.5	0.2	0.09	12.9	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
FANCL_C	PF11793.8	gi|227826445|ref|YP_002828224.1|	-	0.07	13.3	0.6	0.12	12.6	0.6	1.4	1	0	0	1	1	1	0	FANCL	C-terminal	domain
DAHP_snth_FXD	PF18152.1	gi|227826445|ref|YP_002828224.1|	-	0.071	13.0	0.6	2.6	7.9	0.1	2.4	1	1	1	2	2	2	0	DAHP	synthase	ferredoxin-like	domain
Ribosomal_L37ae	PF01780.19	gi|227826445|ref|YP_002828224.1|	-	1.4	9.1	4.4	11	6.2	0.7	2.3	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
NAD_kinase	PF01513.21	gi|227826446|ref|YP_002828225.1|	-	5.7e-24	84.8	0.1	1e-23	84.0	0.1	1.4	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|227826446|ref|YP_002828225.1|	-	0.0058	16.2	0.0	0.012	15.2	0.0	1.5	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
MFS_1	PF07690.16	gi|227826447|ref|YP_002828226.1|	-	3.5e-23	82.1	43.0	3.5e-23	82.1	43.0	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Pyr_redox_2	PF07992.14	gi|227826449|ref|YP_002828228.1|	-	7e-29	101.0	1.0	9.1e-29	100.6	1.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227826449|ref|YP_002828228.1|	-	2.2e-27	96.1	1.6	9.4e-26	90.8	0.1	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227826449|ref|YP_002828228.1|	-	5e-13	49.4	0.4	1.6e-10	41.4	0.0	2.7	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|227826449|ref|YP_002828228.1|	-	9.2e-10	38.2	0.9	6.6e-08	32.1	0.0	3.0	3	1	1	4	4	4	2	L-lysine	6-monooxygenase	(NADPH-requiring)
HI0933_like	PF03486.14	gi|227826449|ref|YP_002828228.1|	-	1.1e-07	31.0	1.2	0.00045	19.0	0.1	3.4	4	1	1	5	5	5	2	HI0933-like	protein
DAO	PF01266.24	gi|227826449|ref|YP_002828228.1|	-	1.1e-05	25.2	0.9	0.21	11.1	0.1	3.2	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|227826449|ref|YP_002828228.1|	-	7e-05	23.2	0.2	0.0037	17.7	0.1	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FMO-like	PF00743.19	gi|227826449|ref|YP_002828228.1|	-	0.00013	20.6	0.4	0.0013	17.3	0.0	2.0	1	1	0	2	2	2	1	Flavin-binding	monooxygenase-like
NAD_binding_8	PF13450.6	gi|227826449|ref|YP_002828228.1|	-	0.00019	21.6	0.3	0.0014	18.8	0.2	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|227826449|ref|YP_002828228.1|	-	0.00022	20.7	0.2	0.004	16.6	0.0	2.4	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|227826449|ref|YP_002828228.1|	-	0.011	15.0	0.1	0.056	12.7	0.1	2.2	2	0	0	2	2	2	0	Thi4	family
DUF2103	PF09876.9	gi|227826449|ref|YP_002828228.1|	-	0.14	12.2	0.1	0.31	11.1	0.1	1.5	1	0	0	1	1	1	0	Predicted	metal-binding	protein	(DUF2103)
Met_10	PF02475.16	gi|227826450|ref|YP_002828229.1|	-	1.7e-28	99.7	0.7	2e-28	99.5	0.7	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_25	PF13649.6	gi|227826450|ref|YP_002828229.1|	-	0.0035	18.0	0.0	0.0058	17.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|227826450|ref|YP_002828229.1|	-	0.0094	15.5	0.0	0.019	14.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|227826450|ref|YP_002828229.1|	-	0.042	13.8	0.1	0.078	12.9	0.1	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF371	PF04027.13	gi|227826451|ref|YP_002828230.1|	-	5.5e-48	162.3	0.8	6.4e-48	162.1	0.8	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
CRS1_YhbY	PF01985.21	gi|227826452|ref|YP_002828231.1|	-	2.2e-14	53.4	2.4	2.4e-14	53.2	2.4	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
DUF3216	PF11505.8	gi|227826452|ref|YP_002828231.1|	-	0.05	13.8	1.8	0.082	13.1	1.5	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3216)
Rpr2	PF04032.16	gi|227826453|ref|YP_002828232.1|	-	2.3e-11	43.8	0.2	3.5e-11	43.2	0.2	1.3	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Ribosomal_L40e	PF01020.17	gi|227826453|ref|YP_002828232.1|	-	0.02	14.8	0.5	0.044	13.7	0.5	1.6	1	0	0	1	1	1	0	Ribosomal	L40e	family
GFA	PF04828.14	gi|227826453|ref|YP_002828232.1|	-	0.042	14.2	0.0	0.053	13.9	0.0	1.2	1	0	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
EMG1	PF03587.14	gi|227826454|ref|YP_002828233.1|	-	1.1e-44	152.4	0.4	1.3e-44	152.2	0.4	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
RDV-p3	PF09231.10	gi|227826455|ref|YP_002828234.1|	-	0.0081	13.9	0.0	0.011	13.5	0.0	1.1	1	0	0	1	1	1	1	Rice	dwarf	virus	p3
YfzA	PF14118.6	gi|227826456|ref|YP_002828235.1|	-	0.013	15.9	2.4	0.017	15.5	2.4	1.4	1	1	0	1	1	1	0	YfzA-like	protein
CLPTM1	PF05602.12	gi|227826456|ref|YP_002828235.1|	-	0.023	13.7	0.1	0.024	13.7	0.1	1.1	1	0	0	1	1	1	0	Cleft	lip	and	palate	transmembrane	protein	1	(CLPTM1)
XhlA	PF10779.9	gi|227826456|ref|YP_002828235.1|	-	0.048	13.9	0.3	0.06	13.6	0.3	1.1	1	0	0	1	1	1	0	Haemolysin	XhlA
Cation_efflux	PF01545.21	gi|227826457|ref|YP_002828236.1|	-	1.8e-22	80.1	26.1	2.3e-22	79.7	26.1	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|227826457|ref|YP_002828236.1|	-	0.049	13.8	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
VitK2_biosynth	PF02621.14	gi|227826458|ref|YP_002828237.1|	-	4.9e-62	209.9	0.0	5.5e-62	209.7	0.0	1.0	1	0	0	1	1	1	1	Menaquinone	biosynthesis
NTPase_I-T	PF01931.18	gi|227826459|ref|YP_002828238.1|	-	2e-47	161.0	0.0	2.2e-47	160.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
Thioredoxin	PF00085.20	gi|227826461|ref|YP_002828240.1|	-	2.2e-27	95.0	0.0	3.1e-27	94.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|227826461|ref|YP_002828240.1|	-	3.5e-07	30.6	0.9	2.6e-05	24.6	0.2	2.4	2	1	0	2	2	2	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|227826461|ref|YP_002828240.1|	-	1.1e-05	25.7	0.3	0.016	15.5	0.0	2.7	2	1	1	3	3	3	2	Thioredoxin-like
OST3_OST6	PF04756.13	gi|227826461|ref|YP_002828240.1|	-	1.2e-05	24.8	0.0	1.7e-05	24.4	0.0	1.3	1	1	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_3	PF13192.6	gi|227826461|ref|YP_002828240.1|	-	0.00015	21.7	0.1	0.00028	20.8	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_9	PF14595.6	gi|227826461|ref|YP_002828240.1|	-	0.00022	21.0	0.2	0.00025	20.8	0.2	1.2	1	0	0	1	1	1	1	Thioredoxin
Phosducin	PF02114.16	gi|227826461|ref|YP_002828240.1|	-	0.0053	15.7	0.0	0.006	15.6	0.0	1.1	1	0	0	1	1	1	1	Phosducin
HyaE	PF07449.11	gi|227826461|ref|YP_002828240.1|	-	0.0058	16.6	0.0	0.011	15.7	0.0	1.6	1	1	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_6	PF13848.6	gi|227826461|ref|YP_002828240.1|	-	0.0061	16.5	0.3	0.011	15.7	0.3	1.4	1	1	0	1	1	1	1	Thioredoxin-like	domain
Redoxin	PF08534.10	gi|227826461|ref|YP_002828240.1|	-	0.025	14.3	0.0	0.037	13.7	0.0	1.3	1	1	0	1	1	1	0	Redoxin
DUF2456	PF10445.9	gi|227826461|ref|YP_002828240.1|	-	0.028	14.5	0.0	0.035	14.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2456)
TetR_C_23	PF17931.1	gi|227826461|ref|YP_002828240.1|	-	0.12	12.5	0.3	0.18	11.9	0.3	1.2	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
DAO	PF01266.24	gi|227826462|ref|YP_002828241.1|	-	1e-15	58.2	0.0	5.7e-15	55.7	0.0	1.9	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227826462|ref|YP_002828241.1|	-	0.0029	16.9	1.9	0.22	10.7	0.0	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|227826462|ref|YP_002828241.1|	-	0.013	14.7	0.1	5.1	6.2	0.0	2.6	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
tRNA_deacylase	PF04414.12	gi|227826463|ref|YP_002828242.1|	-	4e-57	193.1	0.0	4.6e-57	192.9	0.0	1.0	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
DUF4988	PF16378.5	gi|227826463|ref|YP_002828242.1|	-	0.043	13.5	2.7	4	7.1	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function
His_Phos_1	PF00300.22	gi|227826464|ref|YP_002828243.1|	-	3.3e-39	134.6	0.0	4.1e-39	134.3	0.0	1.0	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
Metallophos	PF00149.28	gi|227826465|ref|YP_002828244.1|	-	3.2e-07	31.0	1.3	1.4e-06	29.0	1.3	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|227826465|ref|YP_002828244.1|	-	5.7e-06	26.6	0.0	0.0031	17.7	0.0	2.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|227826465|ref|YP_002828244.1|	-	0.00041	19.8	2.0	0.001	18.5	0.1	2.4	3	0	0	3	3	3	1	Metallophosphoesterase,	calcineurin	superfamily
DUF3364	PF11844.8	gi|227826465|ref|YP_002828244.1|	-	0.19	12.0	3.8	0.11	12.7	0.9	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3364)
GSIII_N	PF12437.8	gi|227826466|ref|YP_002828245.1|	-	0.099	12.3	0.0	0.11	12.2	0.0	1.1	1	0	0	1	1	1	0	Glutamine	synthetase	type	III	N	terminal
AAA_13	PF13166.6	gi|227826467|ref|YP_002828246.1|	-	1.7e-05	23.7	49.9	0.00039	19.2	4.7	3.4	1	1	1	3	3	3	2	AAA	domain
DASH_Spc19	PF08287.11	gi|227826467|ref|YP_002828246.1|	-	0.012	15.5	9.2	0.012	15.5	9.2	5.1	3	2	2	5	5	4	0	Spc19
DUF4407	PF14362.6	gi|227826467|ref|YP_002828246.1|	-	0.2	11.0	33.3	1.6	8.0	16.5	3.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
NPV_P10	PF05531.12	gi|227826467|ref|YP_002828246.1|	-	0.38	11.2	27.6	0.6	10.6	1.2	5.5	3	2	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
HSBP1	PF06825.12	gi|227826467|ref|YP_002828246.1|	-	0.4	10.6	15.1	11	5.9	0.1	6.0	5	1	0	5	5	5	0	Heat	shock	factor	binding	protein	1
SMC_N	PF02463.19	gi|227826467|ref|YP_002828246.1|	-	0.75	9.2	26.7	16	4.8	25.3	3.0	2	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Golgin_A5	PF09787.9	gi|227826467|ref|YP_002828246.1|	-	1.7	8.0	53.1	0.18	11.2	12.3	3.3	1	1	2	3	3	3	0	Golgin	subfamily	A	member	5
Spc7	PF08317.11	gi|227826467|ref|YP_002828246.1|	-	2.2	7.1	62.3	0.15	10.9	14.8	4.1	2	2	2	4	4	4	0	Spc7	kinetochore	protein
AAA_23	PF13476.6	gi|227826467|ref|YP_002828246.1|	-	2.8	8.4	75.5	4e+03	-1.9	0.2	4.9	1	1	1	2	2	1	0	AAA	domain
Fez1	PF06818.15	gi|227826467|ref|YP_002828246.1|	-	5.4	7.4	44.4	5.4	7.4	18.7	3.0	2	1	1	3	3	3	0	Fez1
ABC_tran_CTD	PF16326.5	gi|227826467|ref|YP_002828246.1|	-	5.6	7.3	63.0	0.31	11.3	1.4	7.0	2	2	5	7	7	7	0	ABC	transporter	C-terminal	domain
Prefoldin_2	PF01920.20	gi|227826467|ref|YP_002828246.1|	-	8.5	6.4	59.8	0.049	13.6	11.2	6.2	2	2	4	6	6	5	0	Prefoldin	subunit
IU_nuc_hydro	PF01156.19	gi|227826468|ref|YP_002828247.1|	-	3.4e-74	250.1	0.0	3.9e-74	250.0	0.0	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
FUR	PF01475.19	gi|227826469|ref|YP_002828248.1|	-	3.8e-23	81.9	0.0	4.4e-23	81.7	0.0	1.0	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_5	PF01022.20	gi|227826469|ref|YP_002828248.1|	-	0.00036	20.4	0.0	0.0074	16.1	0.0	2.4	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|227826469|ref|YP_002828248.1|	-	0.0023	17.9	0.0	0.0051	16.8	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|227826469|ref|YP_002828248.1|	-	0.0041	17.0	0.2	0.014	15.3	0.1	2.1	1	1	0	1	1	1	1	HTH	domain
PadR	PF03551.14	gi|227826469|ref|YP_002828248.1|	-	0.0076	16.2	0.1	0.012	15.5	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_32	PF13565.6	gi|227826469|ref|YP_002828248.1|	-	0.014	16.0	0.0	0.021	15.4	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
CtsR_C	PF17727.1	gi|227826469|ref|YP_002828248.1|	-	0.02	15.0	0.1	0.062	13.4	0.0	1.8	2	0	0	2	2	2	0	CtsR	C-terminal	dimerization	domain
Penicillinase_R	PF03965.16	gi|227826469|ref|YP_002828248.1|	-	0.025	14.9	0.0	0.043	14.2	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HxlR	PF01638.17	gi|227826469|ref|YP_002828248.1|	-	0.028	14.3	0.0	0.045	13.6	0.0	1.5	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_23	PF13384.6	gi|227826469|ref|YP_002828248.1|	-	0.1	12.5	0.0	2.5	8.0	0.0	2.2	1	1	0	1	1	1	0	Homeodomain-like	domain
Methyltransf_11	PF08241.12	gi|227826471|ref|YP_002828250.1|	-	8.5e-14	52.0	0.0	1.3e-13	51.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227826471|ref|YP_002828250.1|	-	2.3e-06	28.2	0.0	4.3e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227826471|ref|YP_002828250.1|	-	8.9e-05	22.4	0.0	0.00012	21.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227826471|ref|YP_002828250.1|	-	0.00016	21.1	0.1	0.00032	20.1	0.1	1.5	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|227826471|ref|YP_002828250.1|	-	0.0016	18.3	0.1	0.0029	17.4	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Cation_efflux	PF01545.21	gi|227826472|ref|YP_002828251.1|	-	1.5e-16	60.7	24.2	1.8e-16	60.5	24.2	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|227826472|ref|YP_002828251.1|	-	0.00016	21.7	0.6	0.00025	21.1	0.6	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
NurA	PF09376.10	gi|227826473|ref|YP_002828252.1|	-	1.5e-27	96.8	0.9	2.2e-27	96.3	0.9	1.2	1	0	0	1	1	1	1	NurA	domain
Eno-Rase_FAD_bd	PF07055.12	gi|227826473|ref|YP_002828252.1|	-	0.082	13.3	0.0	0.33	11.4	0.0	2.0	1	0	0	1	1	1	0	Enoyl	reductase	FAD	binding	domain
S-antigen	PF05756.11	gi|227826473|ref|YP_002828252.1|	-	0.15	12.4	2.2	0.49	10.8	0.2	2.2	2	0	0	2	2	2	0	S-antigen	protein
DUF5099	PF17025.5	gi|227826473|ref|YP_002828252.1|	-	2.7	8.5	6.4	1	9.8	1.7	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5099)
AAA_23	PF13476.6	gi|227826474|ref|YP_002828253.1|	-	1.1e-18	68.4	22.6	1.1e-18	68.4	22.6	7.4	1	1	3	4	4	1	1	AAA	domain
Rad50_zn_hook	PF04423.14	gi|227826474|ref|YP_002828253.1|	-	1.1e-13	50.7	0.6	1.1e-13	50.7	0.6	8.9	9	3	1	10	10	9	1	Rad50	zinc	hook	motif
SMC_N	PF02463.19	gi|227826474|ref|YP_002828253.1|	-	3.3e-13	49.6	53.0	5.4e-12	45.6	53.0	2.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|227826474|ref|YP_002828253.1|	-	2.8e-11	43.8	117.7	1.6e-06	28.1	33.6	4.1	1	1	2	3	3	2	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|227826474|ref|YP_002828253.1|	-	1.1e-08	35.3	23.8	7.6e-07	29.2	5.0	4.7	2	2	2	4	4	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|227826474|ref|YP_002828253.1|	-	1.9e-06	26.8	100.6	0.0044	15.8	27.3	5.8	1	1	4	5	5	5	4	AAA	domain
Spc7	PF08317.11	gi|227826474|ref|YP_002828253.1|	-	9.9e-06	24.6	111.4	0.00061	18.8	16.0	5.8	2	2	4	6	6	6	3	Spc7	kinetochore	protein
AAA_29	PF13555.6	gi|227826474|ref|YP_002828253.1|	-	5.6e-05	22.8	0.1	0.0001	22.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|227826474|ref|YP_002828253.1|	-	0.00011	21.9	0.0	0.00011	21.9	0.0	4.6	3	2	0	4	4	4	1	AAA	domain
SbcCD_C	PF13558.6	gi|227826474|ref|YP_002828253.1|	-	0.00021	21.5	0.0	0.00071	19.8	0.0	1.9	2	0	0	2	2	1	1	Putative	exonuclease	SbcCD,	C	subunit
TMF_TATA_bd	PF12325.8	gi|227826474|ref|YP_002828253.1|	-	0.00022	21.4	17.8	0.00022	21.4	17.8	7.7	2	2	5	7	7	6	2	TATA	element	modulatory	factor	1	TATA	binding
GAS	PF13851.6	gi|227826474|ref|YP_002828253.1|	-	0.00027	20.3	131.4	0.0016	17.8	32.3	6.1	2	2	3	5	5	5	4	Growth-arrest	specific	micro-tubule	binding
APG17	PF04108.12	gi|227826474|ref|YP_002828253.1|	-	0.00057	19.1	23.1	0.00057	19.1	23.1	4.9	1	1	4	5	5	5	1	Autophagy	protein	Apg17
T3SSipB	PF16535.5	gi|227826474|ref|YP_002828253.1|	-	0.0012	19.3	0.3	0.0012	19.3	0.3	6.6	2	2	3	5	5	5	1	Type	III	cell	invasion	protein	SipB
DHR10	PF18595.1	gi|227826474|ref|YP_002828253.1|	-	0.012	15.7	12.3	0.012	15.7	12.3	8.0	3	3	4	7	7	7	0	Designed	helical	repeat	protein	10	domain
Cep57_CLD_2	PF14197.6	gi|227826474|ref|YP_002828253.1|	-	0.014	15.5	11.7	0.014	15.5	11.7	8.0	5	3	2	7	7	3	0	Centrosome	localisation	domain	of	PPC89
Filament	PF00038.21	gi|227826474|ref|YP_002828253.1|	-	0.046	13.3	105.5	0.21	11.1	11.8	4.2	1	1	3	4	4	4	0	Intermediate	filament	protein
RsgA_GTPase	PF03193.16	gi|227826474|ref|YP_002828253.1|	-	0.19	11.7	0.0	0.19	11.7	0.0	3.8	5	0	0	5	5	5	0	RsgA	GTPase
DUF3090	PF11290.8	gi|227826474|ref|YP_002828253.1|	-	0.42	10.4	0.0	0.42	10.4	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3090)
Glyco_hydro_18	PF00704.28	gi|227826474|ref|YP_002828253.1|	-	0.47	10.1	5.5	7.6	6.2	0.7	2.4	2	0	0	2	2	2	0	Glycosyl	hydrolases	family	18
Eno-Rase_FAD_bd	PF07055.12	gi|227826474|ref|YP_002828253.1|	-	1.7	9.1	9.2	1.7	9.1	0.1	4.3	3	0	0	3	3	3	0	Enoyl	reductase	FAD	binding	domain
HHH_8	PF14716.6	gi|227826474|ref|YP_002828253.1|	-	4.3	7.8	10.6	0.4	11.1	0.6	4.4	5	0	0	5	5	4	0	Helix-hairpin-helix	domain
Fez1	PF06818.15	gi|227826474|ref|YP_002828253.1|	-	7	7.0	95.4	0.24	11.9	22.5	5.3	1	1	3	5	5	5	0	Fez1
Metallophos	PF00149.28	gi|227826475|ref|YP_002828254.1|	-	1.7e-11	45.0	1.2	3.4e-11	44.1	0.7	1.9	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|227826475|ref|YP_002828254.1|	-	1.3e-09	38.4	0.0	3.2e-09	37.2	0.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
hnRNP_Q_AcD	PF18360.1	gi|227826475|ref|YP_002828254.1|	-	0.094	12.7	0.2	0.57	10.2	0.0	2.3	2	0	0	2	2	2	0	Heterogeneous	nuclear	ribonucleoprotein	Q	acidic	domain
DUF87	PF01935.17	gi|227826476|ref|YP_002828255.1|	-	1.4e-43	149.6	2.2	2.5e-43	148.8	2.2	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|227826476|ref|YP_002828255.1|	-	6.2e-12	44.9	0.0	2e-05	23.4	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
HAS-barrel	PF09378.10	gi|227826476|ref|YP_002828255.1|	-	1.1e-09	38.3	0.0	4.6e-09	36.3	0.0	2.1	1	0	0	1	1	1	1	HAS	barrel	domain
TrwB_AAD_bind	PF10412.9	gi|227826476|ref|YP_002828255.1|	-	2.3e-05	23.5	0.0	6.1e-05	22.1	0.0	1.6	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|227826476|ref|YP_002828255.1|	-	0.0013	17.7	0.0	0.16	10.9	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
FtsK_SpoIIIE	PF01580.18	gi|227826476|ref|YP_002828255.1|	-	0.0019	17.6	0.1	0.033	13.6	0.0	2.3	2	1	1	3	3	2	1	FtsK/SpoIIIE	family
DHC_N1	PF08385.12	gi|227826476|ref|YP_002828255.1|	-	0.0048	15.6	0.6	0.0076	14.9	0.6	1.3	1	0	0	1	1	1	1	Dynein	heavy	chain,	N-terminal	region	1
ResIII	PF04851.15	gi|227826476|ref|YP_002828255.1|	-	0.021	14.8	0.7	0.89	9.5	0.7	2.5	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
ABC_tran	PF00005.27	gi|227826476|ref|YP_002828255.1|	-	0.036	14.6	0.0	0.068	13.7	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
Fz	PF01392.22	gi|227826477|ref|YP_002828256.1|	-	0.00048	20.7	2.4	0.32	11.6	0.3	2.2	1	1	1	2	2	2	2	Fz	domain
DUF892	PF05974.12	gi|227826477|ref|YP_002828256.1|	-	0.0013	18.8	16.7	0.21	11.6	1.5	2.3	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF892)
TPR_15	PF13429.6	gi|227826477|ref|YP_002828256.1|	-	0.0042	16.3	1.2	0.015	14.5	0.0	2.0	2	1	0	2	2	2	1	Tetratricopeptide	repeat
DUF2024	PF09630.10	gi|227826477|ref|YP_002828256.1|	-	0.013	15.4	8.6	0.4	10.6	0.9	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2024)
YlzJ	PF14035.6	gi|227826477|ref|YP_002828256.1|	-	0.029	14.6	2.0	1.9	8.8	0.2	2.4	2	0	0	2	2	2	0	YlzJ-like	protein
DUF2009	PF09418.10	gi|227826477|ref|YP_002828256.1|	-	0.04	13.0	5.5	0.044	12.9	5.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2009)
Rubrerythrin	PF02915.17	gi|227826477|ref|YP_002828256.1|	-	0.043	14.2	22.7	0.59	10.5	5.6	3.4	1	1	2	3	3	3	0	Rubrerythrin
YppG	PF14179.6	gi|227826477|ref|YP_002828256.1|	-	0.058	14.1	0.3	6.5	7.5	0.0	2.3	1	1	1	2	2	2	0	YppG-like	protein
DUF3412	PF11892.8	gi|227826477|ref|YP_002828256.1|	-	0.12	12.5	2.3	4.4	7.4	0.2	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3412)
Ferritin	PF00210.24	gi|227826477|ref|YP_002828256.1|	-	0.49	10.3	19.2	5.6	6.9	2.1	3.3	1	1	1	2	2	2	0	Ferritin-like	domain
Blo-t-5	PF11642.8	gi|227826477|ref|YP_002828256.1|	-	0.68	9.9	14.5	2.9	7.9	1.2	3.1	2	1	1	3	3	3	0	Mite	allergen	Blo	t	5
TBCC_N	PF16752.5	gi|227826477|ref|YP_002828256.1|	-	0.71	10.3	12.3	0.75	10.2	5.0	2.6	1	1	2	3	3	3	0	Tubulin-specific	chaperone	C	N-terminal	domain
SpoVIF	PF14069.6	gi|227826477|ref|YP_002828256.1|	-	1.2	9.0	6.9	0.4	10.5	0.7	2.9	3	1	0	3	3	3	0	Stage	VI	sporulation	protein	F
DUF4404	PF14357.6	gi|227826477|ref|YP_002828256.1|	-	1.7	9.4	11.1	11	6.7	0.5	3.2	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4404)
Carb_kinase	PF01256.17	gi|227826478|ref|YP_002828257.1|	-	9.6e-52	175.9	0.0	1.4e-51	175.4	0.0	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|227826478|ref|YP_002828257.1|	-	1.5e-39	135.6	0.0	3.1e-39	134.6	0.0	1.6	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.15	gi|227826478|ref|YP_002828257.1|	-	3e-07	30.1	0.1	8.8e-07	28.5	0.1	1.8	1	1	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
KR	PF08659.10	gi|227826478|ref|YP_002828257.1|	-	0.0097	15.8	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|227826478|ref|YP_002828257.1|	-	0.048	13.1	0.4	0.12	11.8	0.0	1.8	2	0	0	2	2	2	0	short	chain	dehydrogenase
NAD_binding_7	PF13241.6	gi|227826478|ref|YP_002828257.1|	-	0.076	13.5	0.0	12	6.4	0.0	2.6	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|227826478|ref|YP_002828257.1|	-	0.085	12.1	1.7	2.3	7.4	0.2	2.7	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AhpC-TSA	PF00578.21	gi|227826479|ref|YP_002828258.1|	-	1.2e-40	138.3	0.2	1.5e-40	138.0	0.2	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|227826479|ref|YP_002828258.1|	-	2.9e-26	92.0	0.1	3.4e-26	91.7	0.1	1.0	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|227826479|ref|YP_002828258.1|	-	1.6e-06	28.4	0.0	2.6e-06	27.7	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA_2	PF13911.6	gi|227826479|ref|YP_002828258.1|	-	0.0004	20.5	0.1	0.00058	20.0	0.1	1.3	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
SCO1-SenC	PF02630.14	gi|227826479|ref|YP_002828258.1|	-	0.0032	17.4	0.0	0.0047	16.8	0.0	1.4	1	1	0	1	1	1	1	SCO1/SenC
Polysacc_deac_2	PF04748.13	gi|227826479|ref|YP_002828258.1|	-	0.02	14.1	0.1	0.023	13.9	0.1	1.2	1	0	0	1	1	1	0	Divergent	polysaccharide	deacetylase
Peptidase_M60	PF13402.6	gi|227826479|ref|YP_002828258.1|	-	0.058	12.9	0.0	0.062	12.8	0.0	1.1	1	0	0	1	1	1	0	Peptidase	M60,	enhancin	and	enhancin-like
Inhibitor_I78	PF11720.8	gi|227826479|ref|YP_002828258.1|	-	0.2	11.7	0.0	0.44	10.6	0.0	1.5	1	0	0	1	1	1	0	Peptidase	inhibitor	I78	family
PEPcase_2	PF14010.6	gi|227826480|ref|YP_002828259.1|	-	3.8e-218	724.9	1.3	4.3e-218	724.8	1.3	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
HpcH_HpaI	PF03328.14	gi|227826480|ref|YP_002828259.1|	-	0.21	10.7	0.1	0.45	9.6	0.1	1.4	1	0	0	1	1	1	0	HpcH/HpaI	aldolase/citrate	lyase	family
DUF4375	PF14300.6	gi|227826481|ref|YP_002828260.1|	-	0.12	12.6	0.0	0.23	11.8	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4375)
CbiA	PF01656.23	gi|227826481|ref|YP_002828260.1|	-	0.18	11.9	0.0	0.21	11.7	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF1641	PF07849.11	gi|227826482|ref|YP_002828261.1|	-	1.2e-14	53.9	0.0	3.3e-14	52.5	0.0	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Pyr_redox_2	PF07992.14	gi|227826483|ref|YP_002828262.1|	-	7.4e-26	91.0	0.0	4.5e-15	55.6	0.0	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227826483|ref|YP_002828262.1|	-	0.00033	21.2	0.1	0.065	13.8	0.0	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
UPF0154	PF03672.13	gi|227826483|ref|YP_002828262.1|	-	0.12	12.4	0.0	0.3	11.1	0.0	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0154)
Abhydrolase_1	PF00561.20	gi|227826484|ref|YP_002828263.1|	-	1.5e-15	57.6	0.0	1.7e-12	47.6	0.0	2.0	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|227826484|ref|YP_002828263.1|	-	1.8e-10	40.5	0.0	2.3e-06	27.1	0.0	2.7	1	1	1	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|227826484|ref|YP_002828263.1|	-	8.7e-07	29.8	0.0	9.6e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Ndr	PF03096.14	gi|227826484|ref|YP_002828263.1|	-	6.3e-06	25.1	0.3	0.00013	20.7	0.3	2.1	1	1	1	2	2	2	1	Ndr	family
Abhydrolase_2	PF02230.16	gi|227826484|ref|YP_002828263.1|	-	0.00061	19.7	0.0	0.00084	19.2	0.0	1.3	1	0	0	1	1	1	1	Phospholipase/Carboxylesterase
FSH1	PF03959.13	gi|227826484|ref|YP_002828263.1|	-	0.17	11.5	0.0	0.28	10.8	0.0	1.3	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
DUF2250	PF10007.9	gi|227826485|ref|YP_002828264.1|	-	3.6e-69	228.9	14.7	3.6e-37	126.4	3.4	2.0	2	0	0	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4423	PF14394.6	gi|227826485|ref|YP_002828264.1|	-	1.8e-06	27.8	2.6	0.00093	18.9	0.1	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.6	gi|227826485|ref|YP_002828264.1|	-	0.00072	20.0	0.8	0.34	11.4	0.0	3.0	3	0	0	3	3	3	2	Winged	helix	DNA-binding	domain
HemN_C	PF06969.16	gi|227826485|ref|YP_002828264.1|	-	0.014	15.4	0.3	0.38	10.8	0.0	2.9	3	0	0	3	3	3	0	HemN	C-terminal	domain
TrmB	PF01978.19	gi|227826485|ref|YP_002828264.1|	-	0.018	14.9	0.7	0.2	11.5	0.0	2.7	2	1	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF3116	PF11313.8	gi|227826485|ref|YP_002828264.1|	-	0.026	14.4	2.1	2.1	8.3	0.1	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3116)
HTH_45	PF14947.6	gi|227826485|ref|YP_002828264.1|	-	0.075	13.0	2.2	1	9.4	0.3	3.1	2	2	0	2	2	2	0	Winged	helix-turn-helix
RQC	PF09382.10	gi|227826485|ref|YP_002828264.1|	-	0.086	12.6	0.4	1.5	8.6	0.1	2.5	2	1	0	2	2	2	0	RQC	domain
MeaB	PF03308.16	gi|227826486|ref|YP_002828265.1|	-	1.1e-85	286.8	1.8	1.4e-85	286.5	1.8	1.0	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|227826486|ref|YP_002828265.1|	-	3.7e-07	29.9	1.5	2.6e-06	27.1	1.5	2.2	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
DUF87	PF01935.17	gi|227826486|ref|YP_002828265.1|	-	3.4e-05	24.0	2.3	0.00027	21.1	0.1	2.2	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
ATP_bind_1	PF03029.17	gi|227826486|ref|YP_002828265.1|	-	0.00038	20.3	0.1	0.0031	17.4	0.0	2.1	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
MipZ	PF09140.11	gi|227826486|ref|YP_002828265.1|	-	0.00041	19.7	0.0	0.00081	18.7	0.0	1.5	1	0	0	1	1	1	1	ATPase	MipZ
MobB	PF03205.14	gi|227826486|ref|YP_002828265.1|	-	0.00046	20.1	0.1	0.0012	18.7	0.1	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TrwB_AAD_bind	PF10412.9	gi|227826486|ref|YP_002828265.1|	-	0.0022	17.0	0.1	0.0039	16.2	0.1	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CbiA	PF01656.23	gi|227826486|ref|YP_002828265.1|	-	0.0048	17.0	0.0	0.012	15.7	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ABC_tran	PF00005.27	gi|227826486|ref|YP_002828265.1|	-	0.0058	17.1	0.8	0.026	15.1	0.1	2.1	2	0	0	2	2	2	1	ABC	transporter
AAA_22	PF13401.6	gi|227826486|ref|YP_002828265.1|	-	0.0064	16.8	0.0	0.014	15.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|227826486|ref|YP_002828265.1|	-	0.0073	16.0	0.1	0.013	15.3	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|227826486|ref|YP_002828265.1|	-	0.0091	15.6	0.1	0.32	10.6	0.0	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
GTP_EFTU	PF00009.27	gi|227826486|ref|YP_002828265.1|	-	0.016	14.7	0.3	3.1	7.3	0.0	2.4	2	0	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_18	PF13238.6	gi|227826486|ref|YP_002828265.1|	-	0.017	15.7	0.5	0.041	14.4	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|227826486|ref|YP_002828265.1|	-	0.018	14.4	0.5	0.12	11.7	0.1	2.0	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
NTPase_1	PF03266.15	gi|227826486|ref|YP_002828265.1|	-	0.02	14.8	0.2	0.02	14.8	0.2	2.1	2	0	0	2	2	2	0	NTPase
MMR_HSR1	PF01926.23	gi|227826486|ref|YP_002828265.1|	-	0.034	14.2	1.6	0.065	13.3	0.1	2.1	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Viral_helicase1	PF01443.18	gi|227826486|ref|YP_002828265.1|	-	0.068	12.9	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_16	PF13191.6	gi|227826486|ref|YP_002828265.1|	-	0.095	13.1	0.1	0.17	12.2	0.1	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
DUF463	PF04317.12	gi|227826486|ref|YP_002828265.1|	-	0.11	11.4	0.0	0.17	10.7	0.0	1.3	1	0	0	1	1	1	0	YcjX-like	family,	DUF463
NB-ARC	PF00931.22	gi|227826486|ref|YP_002828265.1|	-	0.13	11.4	1.3	0.2	10.8	0.1	1.8	2	0	0	2	2	2	0	NB-ARC	domain
Zeta_toxin	PF06414.12	gi|227826486|ref|YP_002828265.1|	-	0.2	10.9	2.5	0.52	9.6	0.2	2.2	2	0	0	2	2	2	0	Zeta	toxin
AAA_29	PF13555.6	gi|227826486|ref|YP_002828265.1|	-	0.2	11.4	0.5	0.41	10.4	0.5	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
B12-binding	PF02310.19	gi|227826487|ref|YP_002828266.1|	-	5.9e-23	81.2	0.7	7.3e-23	80.9	0.5	1.2	1	1	0	1	1	1	1	B12	binding	domain
IMPDH	PF00478.25	gi|227826487|ref|YP_002828266.1|	-	0.0037	16.3	0.1	0.005	15.9	0.1	1.2	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
Nitro_FeMo-Co	PF02579.17	gi|227826487|ref|YP_002828266.1|	-	0.022	15.1	0.4	10	6.5	0.0	2.5	1	1	1	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
QRPTase_C	PF01729.19	gi|227826487|ref|YP_002828266.1|	-	0.029	14.2	0.5	0.081	12.7	0.2	1.7	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
ADH_zinc_N	PF00107.26	gi|227826487|ref|YP_002828266.1|	-	0.033	14.2	0.1	0.64	10.0	0.0	2.1	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
TPP_enzyme_N	PF02776.18	gi|227826487|ref|YP_002828266.1|	-	0.048	13.3	0.0	3.5	7.2	0.0	2.3	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
DUF2633	PF11119.8	gi|227826488|ref|YP_002828267.1|	-	0.037	13.9	0.6	0.086	12.8	0.6	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2633)
PSS	PF03034.15	gi|227826488|ref|YP_002828267.1|	-	0.04	13.7	1.8	0.043	13.6	1.3	1.3	1	1	0	1	1	1	0	Phosphatidyl	serine	synthase
HTH_20	PF12840.7	gi|227826489|ref|YP_002828268.1|	-	3.6e-06	26.9	0.0	2.2e-05	24.4	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|227826489|ref|YP_002828268.1|	-	1.4e-05	24.6	0.2	3.7e-05	23.2	0.2	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|227826489|ref|YP_002828268.1|	-	0.0001	22.1	0.0	0.00017	21.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|227826489|ref|YP_002828268.1|	-	0.00021	21.2	0.0	0.0004	20.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|227826489|ref|YP_002828268.1|	-	0.00079	19.3	0.3	0.0016	18.3	0.3	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|227826489|ref|YP_002828268.1|	-	0.0013	19.2	0.0	0.002	18.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|227826489|ref|YP_002828268.1|	-	0.003	17.3	0.0	0.0048	16.6	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_11	PF08279.12	gi|227826489|ref|YP_002828268.1|	-	0.0036	17.2	0.1	0.0066	16.4	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_12	PF08461.10	gi|227826489|ref|YP_002828268.1|	-	0.0062	16.5	0.1	0.01	15.7	0.1	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
MarR_2	PF12802.7	gi|227826489|ref|YP_002828268.1|	-	0.014	15.3	0.0	0.021	14.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.6	gi|227826489|ref|YP_002828268.1|	-	0.015	15.2	0.0	0.028	14.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
Membralin	PF09746.9	gi|227826489|ref|YP_002828268.1|	-	0.017	14.2	1.4	0.021	13.9	1.4	1.1	1	0	0	1	1	1	0	Tumour-associated	protein
Fe_dep_repress	PF01325.19	gi|227826489|ref|YP_002828268.1|	-	0.033	14.4	0.0	0.063	13.5	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.6	gi|227826489|ref|YP_002828268.1|	-	0.044	13.7	0.0	0.097	12.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2513	PF10711.9	gi|227826489|ref|YP_002828268.1|	-	0.051	13.9	0.0	0.065	13.5	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
TRAP-gamma	PF07074.12	gi|227826489|ref|YP_002828268.1|	-	0.084	12.4	3.0	0.11	12.0	3.0	1.2	1	0	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
Rrf2	PF02082.20	gi|227826489|ref|YP_002828268.1|	-	0.088	13.2	0.0	0.18	12.1	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
DUF4357	PF14267.6	gi|227826489|ref|YP_002828268.1|	-	0.13	12.2	0.1	8.7	6.4	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4357)
DUF3493	PF11998.8	gi|227826491|ref|YP_002828270.1|	-	0.012	15.7	2.2	1.5	9.0	0.6	2.4	2	0	0	2	2	2	0	Low	psii	accumulation1	/	Rep27
CTV_P6	PF06706.11	gi|227826491|ref|YP_002828270.1|	-	0.083	12.6	6.6	2.6	7.8	3.7	2.6	2	0	0	2	2	2	0	Citrus	tristeza	virus	6-kDa	protein
Insulin_TMD	PF17870.1	gi|227826491|ref|YP_002828270.1|	-	0.34	11.0	0.3	0.34	11.0	0.3	3.4	3	1	1	4	4	4	0	Insulin	receptor	trans-membrane	segment
DUF3963	PF13124.6	gi|227826492|ref|YP_002828271.1|	-	0.077	13.0	1.0	0.71	9.9	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3963)
TauE	PF01925.19	gi|227826493|ref|YP_002828272.1|	-	4.1e-55	187.0	35.4	4.7e-55	186.8	35.4	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF5592	PF17332.2	gi|227826493|ref|YP_002828272.1|	-	0.19	12.3	0.2	0.19	12.3	0.2	2.8	3	1	0	3	3	3	0	Family	of	unknown	function	(DUF5592)
Phage_holin_3_6	PF07332.11	gi|227826493|ref|YP_002828272.1|	-	3.1	7.9	22.9	16	5.5	0.4	3.7	2	1	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Fe_dep_repr_C	PF02742.15	gi|227826494|ref|YP_002828273.1|	-	6e-16	58.3	0.0	1.1e-15	57.4	0.0	1.4	2	0	0	2	2	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|227826494|ref|YP_002828273.1|	-	2e-07	31.1	0.0	2.8e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|227826494|ref|YP_002828273.1|	-	3.8e-05	23.5	0.0	8.1e-05	22.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|227826494|ref|YP_002828273.1|	-	6.8e-05	22.7	0.0	0.00015	21.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|227826494|ref|YP_002828273.1|	-	0.0008	19.3	0.0	0.0011	18.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|227826494|ref|YP_002828273.1|	-	0.0017	18.8	0.0	0.0029	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF4423	PF14394.6	gi|227826494|ref|YP_002828273.1|	-	0.0054	16.5	0.0	0.0068	16.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_IclR	PF09339.10	gi|227826494|ref|YP_002828273.1|	-	0.0056	16.4	0.0	0.0093	15.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|227826494|ref|YP_002828273.1|	-	0.015	15.0	0.0	0.026	14.3	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
B-block_TFIIIC	PF04182.12	gi|227826494|ref|YP_002828273.1|	-	0.016	15.3	0.0	0.03	14.5	0.0	1.6	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
MotA_activ	PF09114.10	gi|227826494|ref|YP_002828273.1|	-	0.059	13.5	0.0	0.099	12.8	0.0	1.4	1	1	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
RuvB_C	PF05491.13	gi|227826494|ref|YP_002828273.1|	-	0.068	13.1	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
FeoC	PF09012.10	gi|227826494|ref|YP_002828273.1|	-	0.068	13.2	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF2250	PF10007.9	gi|227826494|ref|YP_002828273.1|	-	0.07	13.3	0.0	0.098	12.8	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF417	PF04224.12	gi|227826494|ref|YP_002828273.1|	-	0.09	12.3	0.1	0.12	11.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
Rrf2	PF02082.20	gi|227826494|ref|YP_002828273.1|	-	0.09	13.1	0.0	0.14	12.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_45	PF14947.6	gi|227826494|ref|YP_002828273.1|	-	0.095	12.7	0.1	0.29	11.1	0.0	1.7	1	1	1	2	2	2	0	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|227826494|ref|YP_002828273.1|	-	0.11	12.3	0.0	0.25	11.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.6	gi|227826494|ref|YP_002828273.1|	-	0.13	12.2	0.0	0.29	11.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|227826494|ref|YP_002828273.1|	-	0.17	11.5	0.0	0.59	9.7	0.0	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
DHDPS	PF00701.22	gi|227826495|ref|YP_002828274.1|	-	3.4e-57	193.4	0.0	3.7e-57	193.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
UDG	PF03167.19	gi|227826496|ref|YP_002828275.1|	-	1.5e-47	161.4	0.0	2e-47	161.1	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
adh_short_C2	PF13561.6	gi|227826497|ref|YP_002828276.1|	-	8.2e-47	159.7	0.0	1.5e-46	158.9	0.0	1.3	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227826497|ref|YP_002828276.1|	-	5.5e-31	107.6	0.0	6.8e-31	107.2	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227826497|ref|YP_002828276.1|	-	1.9e-05	24.6	0.0	3.5e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	KR	domain
THF_DHG_CYH_C	PF02882.19	gi|227826497|ref|YP_002828276.1|	-	0.062	12.6	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Polysacc_synt_2	PF02719.15	gi|227826497|ref|YP_002828276.1|	-	0.09	11.9	0.0	0.32	10.1	0.0	1.7	2	0	0	2	2	2	0	Polysaccharide	biosynthesis	protein
AAA_15	PF13175.6	gi|227826498|ref|YP_002828277.1|	-	3.5e-27	96.1	11.0	1.8e-16	60.8	0.1	2.8	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|227826498|ref|YP_002828277.1|	-	7.6e-20	71.9	0.8	1.3e-14	54.8	0.1	2.8	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227826498|ref|YP_002828277.1|	-	1.1e-06	28.2	1.9	5.5e-06	26.0	1.9	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|227826498|ref|YP_002828277.1|	-	0.00017	22.1	1.3	0.00019	22.0	0.1	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_13	PF13166.6	gi|227826498|ref|YP_002828277.1|	-	0.039	12.6	1.4	0.074	11.7	0.3	1.9	2	0	0	2	2	2	0	AAA	domain
DUF2813	PF11398.8	gi|227826498|ref|YP_002828277.1|	-	0.045	13.0	1.3	1.5	8.0	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2813)
Peptidase_M3	PF01432.20	gi|227826498|ref|YP_002828277.1|	-	0.12	11.6	0.1	0.18	11.0	0.1	1.1	1	0	0	1	1	1	0	Peptidase	family	M3
DUF131	PF01998.17	gi|227826499|ref|YP_002828278.1|	-	6e-19	67.4	6.0	6e-19	67.4	6.0	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
Claudin_3	PF06653.11	gi|227826499|ref|YP_002828278.1|	-	0.0031	17.5	3.7	0.0033	17.4	3.7	1.1	1	0	0	1	1	1	1	Tight	junction	protein,	Claudin-like
DUF3185	PF11381.8	gi|227826499|ref|YP_002828278.1|	-	0.0061	16.6	7.6	0.019	15.0	7.6	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3185)
DUF3188	PF11384.8	gi|227826499|ref|YP_002828278.1|	-	0.065	12.9	0.5	0.065	12.9	0.5	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
Pox_A14	PF05767.12	gi|227826499|ref|YP_002828278.1|	-	0.15	12.3	0.2	0.15	12.3	0.2	2.0	1	1	0	2	2	2	0	Poxvirus	virion	envelope	protein	A14
Stevor	PF17410.2	gi|227826499|ref|YP_002828278.1|	-	0.17	11.4	3.0	17	4.8	0.0	2.0	2	0	0	2	2	2	0	Subtelomeric	Variable	Open	Reading	frame
DUF2892	PF11127.8	gi|227826499|ref|YP_002828278.1|	-	0.19	11.8	0.2	0.19	11.8	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Orf78	PF06024.12	gi|227826499|ref|YP_002828278.1|	-	0.21	11.9	3.9	3.2	8.1	2.6	2.1	2	0	0	2	2	2	0	Orf78	(ac78)
Baculo_11_kDa	PF06143.11	gi|227826499|ref|YP_002828278.1|	-	0.32	10.6	6.6	3	7.5	3.3	2.1	2	0	0	2	2	2	0	Baculovirus	11	kDa	family
Saf_2TM	PF18303.1	gi|227826499|ref|YP_002828278.1|	-	0.49	10.0	7.5	1.2	8.7	0.5	2.0	1	1	1	2	2	2	0	SAVED-fused	2TM	effector	domain
DUF2614	PF11023.8	gi|227826499|ref|YP_002828278.1|	-	1.2	9.3	6.8	2.8	8.1	0.2	2.1	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
DUF2207	PF09972.9	gi|227826499|ref|YP_002828278.1|	-	1.3	7.7	7.0	1.6	7.4	7.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF872	PF05915.12	gi|227826499|ref|YP_002828278.1|	-	8.5	6.6	7.0	0.75	10.0	1.0	1.9	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
m04gp34like	PF12216.8	gi|227826500|ref|YP_002828279.1|	-	0.0043	16.7	0.5	0.0082	15.7	0.5	1.5	1	0	0	1	1	1	1	Immune	evasion	protein
NUDIX	PF00293.28	gi|227826501|ref|YP_002828280.1|	-	8.7e-20	71.1	0.0	1.3e-19	70.5	0.0	1.3	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.6	gi|227826501|ref|YP_002828280.1|	-	0.00013	22.0	0.0	0.00022	21.2	0.0	1.5	2	0	0	2	2	2	1	NUDIX	domain
tRNA-synt_1e	PF01406.19	gi|227826502|ref|YP_002828281.1|	-	3.2e-125	417.5	1.2	3.2e-125	417.5	1.2	1.6	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|227826502|ref|YP_002828281.1|	-	2.2e-15	56.3	1.6	1.4e-07	30.6	0.5	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|227826502|ref|YP_002828281.1|	-	2.2e-06	26.2	0.0	0.00082	17.7	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
DALR_2	PF09190.11	gi|227826502|ref|YP_002828281.1|	-	3.7e-05	24.1	0.0	0.0001	22.7	0.0	1.8	1	0	0	1	1	1	1	DALR	domain
tRNA-synt_1f	PF01921.18	gi|227826502|ref|YP_002828281.1|	-	0.00014	20.9	0.6	0.0012	17.9	0.1	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.19	gi|227826502|ref|YP_002828281.1|	-	0.00075	18.5	0.0	0.0015	17.5	0.0	1.6	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
tRNA-synt_1c	PF00749.21	gi|227826502|ref|YP_002828281.1|	-	0.0022	16.9	2.5	0.03	13.2	0.5	3.2	3	1	0	3	3	3	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
SH3BP5	PF05276.14	gi|227826502|ref|YP_002828281.1|	-	0.021	14.6	0.1	0.058	13.2	0.0	1.7	2	0	0	2	2	2	0	SH3	domain-binding	protein	5	(SH3BP5)
TB2_DP1_HVA22	PF03134.19	gi|227826502|ref|YP_002828281.1|	-	0.048	13.6	0.2	0.16	11.9	0.1	1.9	2	0	0	2	2	2	0	TB2/DP1,	HVA22	family
bact-PGI_C	PF10432.9	gi|227826503|ref|YP_002828282.1|	-	1.7e-19	70.3	0.1	4.5e-19	69.0	0.1	1.7	1	1	0	1	1	1	1	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
SIS	PF01380.22	gi|227826503|ref|YP_002828282.1|	-	0.00067	19.5	1.2	0.031	14.1	0.1	2.7	3	0	0	3	3	3	1	SIS	domain
PMBR	PF09373.10	gi|227826503|ref|YP_002828282.1|	-	0.056	13.6	0.2	0.2	11.9	0.1	2.1	2	0	0	2	2	2	0	Pseudomurein-binding	repeat
Pyr_redox_2	PF07992.14	gi|227826505|ref|YP_002828284.1|	-	1.6e-49	168.7	0.0	2.2e-49	168.3	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227826505|ref|YP_002828284.1|	-	7.4e-20	71.3	4.1	6.2e-15	55.5	0.8	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|227826505|ref|YP_002828284.1|	-	1.6e-17	63.7	0.6	3.9e-17	62.5	0.6	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|227826505|ref|YP_002828284.1|	-	2.7e-17	63.0	0.3	1.5e-13	50.7	0.0	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|227826505|ref|YP_002828284.1|	-	1e-08	35.3	0.2	0.00052	20.2	0.0	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|227826505|ref|YP_002828284.1|	-	2.5e-08	33.1	1.4	0.0065	15.2	0.0	3.4	3	0	0	3	3	3	2	HI0933-like	protein
DAO	PF01266.24	gi|227826505|ref|YP_002828284.1|	-	6e-07	29.4	1.1	0.059	12.9	0.0	3.2	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|227826505|ref|YP_002828284.1|	-	8.4e-05	21.8	0.7	0.22	10.5	0.1	3.2	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|227826505|ref|YP_002828284.1|	-	0.00028	20.9	1.4	1.6	8.7	0.0	3.5	3	0	0	3	3	3	1	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|227826505|ref|YP_002828284.1|	-	0.00034	20.0	0.0	0.019	14.3	0.0	2.4	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
K_oxygenase	PF13434.6	gi|227826505|ref|YP_002828284.1|	-	0.0007	18.8	0.0	0.0037	16.5	0.0	2.1	3	0	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.24	gi|227826505|ref|YP_002828284.1|	-	0.0012	18.0	2.8	0.043	12.9	0.0	3.1	4	0	0	4	4	4	1	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|227826505|ref|YP_002828284.1|	-	0.0013	17.7	1.4	0.01	14.7	0.1	2.2	2	0	0	2	2	2	1	Tryptophan	halogenase
TrkA_N	PF02254.18	gi|227826505|ref|YP_002828284.1|	-	0.0039	17.4	0.4	0.13	12.5	0.2	2.8	3	0	0	3	3	2	1	TrkA-N	domain
Lycopene_cycl	PF05834.12	gi|227826505|ref|YP_002828284.1|	-	0.0058	15.7	0.3	1.2	8.1	0.0	2.4	2	0	0	2	2	2	1	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|227826505|ref|YP_002828284.1|	-	0.012	15.3	0.5	0.49	10.0	0.1	2.6	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Mqo	PF06039.15	gi|227826505|ref|YP_002828284.1|	-	0.037	12.6	0.1	0.1	11.2	0.1	1.7	1	1	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
F420_oxidored	PF03807.17	gi|227826505|ref|YP_002828284.1|	-	0.037	14.6	2.2	0.11	13.1	0.5	2.6	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Thi4	PF01946.17	gi|227826505|ref|YP_002828284.1|	-	0.042	13.1	0.1	0.16	11.2	0.0	2.0	2	0	0	2	2	2	0	Thi4	family
FAD_oxidored	PF12831.7	gi|227826505|ref|YP_002828284.1|	-	0.068	12.5	1.4	3.6	6.8	0.3	2.5	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|227826505|ref|YP_002828284.1|	-	0.14	11.4	1.3	3.4	6.8	0.2	2.3	2	0	0	2	2	2	0	FAD	binding	domain
PSCyt3	PF07627.11	gi|227826505|ref|YP_002828284.1|	-	0.14	12.4	0.0	0.31	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1588)
NurA	PF09376.10	gi|227826506|ref|YP_002828285.1|	-	8e-11	42.1	0.4	1.2e-10	41.5	0.4	1.3	1	0	0	1	1	1	1	NurA	domain
DUF87	PF01935.17	gi|227826507|ref|YP_002828286.1|	-	5e-14	52.9	1.2	2.2e-12	47.6	1.0	3.0	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|227826507|ref|YP_002828286.1|	-	5e-08	32.3	0.0	2.4e-07	30.0	0.0	1.9	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF853	PF05872.12	gi|227826507|ref|YP_002828286.1|	-	2.6e-07	29.6	0.0	0.0012	17.6	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.7	gi|227826507|ref|YP_002828286.1|	-	1.9e-06	27.0	0.3	0.0094	14.9	0.1	2.3	2	0	0	2	2	2	2	AAA-like	domain
AAA	PF00004.29	gi|227826507|ref|YP_002828286.1|	-	3.4e-06	27.5	0.1	0.0041	17.5	0.1	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|227826507|ref|YP_002828286.1|	-	1.3e-05	25.5	0.0	0.043	14.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
ResIII	PF04851.15	gi|227826507|ref|YP_002828286.1|	-	0.00014	22.0	0.0	0.19	11.7	0.0	2.3	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
FtsK_SpoIIIE	PF01580.18	gi|227826507|ref|YP_002828286.1|	-	0.00078	18.9	0.0	0.0015	17.9	0.0	1.4	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
Pox_A32	PF04665.12	gi|227826507|ref|YP_002828286.1|	-	0.0014	18.2	0.0	0.0029	17.1	0.0	1.5	1	0	0	1	1	1	1	Poxvirus	A32	protein
Zot	PF05707.12	gi|227826507|ref|YP_002828286.1|	-	0.017	14.8	0.0	0.044	13.4	0.0	1.7	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
TsaE	PF02367.17	gi|227826507|ref|YP_002828286.1|	-	0.02	14.9	0.0	0.051	13.6	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DUF2075	PF09848.9	gi|227826507|ref|YP_002828286.1|	-	0.036	13.3	0.0	0.67	9.1	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_7	PF12775.7	gi|227826507|ref|YP_002828286.1|	-	0.051	13.1	0.0	0.096	12.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DEAD	PF00270.29	gi|227826507|ref|YP_002828286.1|	-	0.1	12.3	0.0	2.2	8.0	0.0	2.2	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_14	PF13173.6	gi|227826507|ref|YP_002828286.1|	-	0.11	12.5	0.0	13	5.9	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
4HBT	PF03061.22	gi|227826509|ref|YP_002828288.1|	-	5.7e-19	68.2	0.2	5.3e-09	36.3	0.1	2.3	2	0	0	2	2	2	2	Thioesterase	superfamily
4HBT_2	PF13279.6	gi|227826509|ref|YP_002828288.1|	-	0.00064	20.2	0.0	0.72	10.4	0.0	2.3	1	1	0	2	2	2	2	Thioesterase-like	superfamily
4HBT_3	PF13622.6	gi|227826509|ref|YP_002828288.1|	-	0.061	13.6	0.0	0.2	11.9	0.0	1.7	2	0	0	2	2	2	0	Thioesterase-like	superfamily
adh_short_C2	PF13561.6	gi|227826511|ref|YP_002828290.1|	-	1.1e-60	205.1	0.0	1.4e-60	204.8	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227826511|ref|YP_002828290.1|	-	8.6e-51	172.2	0.2	1.1e-50	171.8	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227826511|ref|YP_002828290.1|	-	4.1e-09	36.6	0.0	6.9e-09	35.9	0.0	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|227826511|ref|YP_002828290.1|	-	0.00017	21.2	0.0	0.00028	20.4	0.0	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|227826511|ref|YP_002828290.1|	-	0.00099	18.7	0.1	0.0041	16.7	0.0	1.9	2	0	0	2	2	2	1	NmrA-like	family
Polysacc_synt_2	PF02719.15	gi|227826511|ref|YP_002828290.1|	-	0.0047	16.1	0.1	0.0064	15.7	0.1	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
LDcluster4	PF18306.1	gi|227826511|ref|YP_002828290.1|	-	0.013	15.1	0.1	0.31	10.6	0.0	2.4	2	0	0	2	2	2	0	SLOG	cluster4	family
NAD_binding_10	PF13460.6	gi|227826511|ref|YP_002828290.1|	-	0.016	15.1	0.1	0.032	14.1	0.0	1.5	2	0	0	2	2	2	0	NAD(P)H-binding
Exo_endo_phos	PF03372.23	gi|227826512|ref|YP_002828291.1|	-	3.6e-14	52.8	0.0	5e-14	52.4	0.0	1.2	1	0	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.6	gi|227826512|ref|YP_002828291.1|	-	9e-07	28.8	0.0	1.3e-05	25.0	0.0	2.5	2	1	0	2	2	2	1	Endonuclease-reverse	transcriptase
Pkinase	PF00069.25	gi|227826513|ref|YP_002828292.1|	-	4.4e-18	65.6	0.1	7.5e-18	64.8	0.1	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|227826513|ref|YP_002828292.1|	-	8.6e-07	28.5	0.0	1.2e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	Protein	tyrosine	kinase
AA_permease_2	PF13520.6	gi|227826514|ref|YP_002828293.1|	-	1.1e-20	73.9	58.6	1.5e-20	73.4	58.6	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227826514|ref|YP_002828293.1|	-	0.008	14.8	53.7	0.012	14.2	47.6	3.0	1	1	0	2	2	2	1	Amino	acid	permease
HEPN	PF05168.14	gi|227826515|ref|YP_002828294.1|	-	5.8e-15	55.4	0.2	6.7e-15	55.3	0.2	1.0	1	0	0	1	1	1	1	HEPN	domain
4HBT_2	PF13279.6	gi|227826516|ref|YP_002828295.1|	-	1.2e-08	35.5	0.0	1.5e-08	35.1	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.22	gi|227826516|ref|YP_002828295.1|	-	2.9e-06	27.5	0.0	4.3e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.17	gi|227826516|ref|YP_002828295.1|	-	0.073	12.4	0.1	0.085	12.1	0.1	1.1	1	0	0	1	1	1	0	Acyl-ACP	thioesterase
TP_methylase	PF00590.20	gi|227826517|ref|YP_002828296.1|	-	1.4e-29	103.6	0.0	1.7e-29	103.3	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiG_N	PF11760.8	gi|227826518|ref|YP_002828297.1|	-	1.7e-27	95.2	0.1	4e-27	94.0	0.1	1.6	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.16	gi|227826518|ref|YP_002828297.1|	-	8.4e-16	58.6	0.0	1.5e-15	57.7	0.0	1.4	1	0	0	1	1	1	1	Cobalamin	synthesis	G	C-terminus
TP_methylase	PF00590.20	gi|227826519|ref|YP_002828298.1|	-	4.5e-48	164.0	0.4	5.4e-48	163.8	0.4	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|227826520|ref|YP_002828299.1|	-	2e-36	126.0	0.0	2.3e-36	125.7	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Methyltransf_31	PF13847.6	gi|227826521|ref|YP_002828300.1|	-	4.5e-13	49.3	0.1	6.4e-13	48.8	0.1	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|227826521|ref|YP_002828300.1|	-	1.5e-12	47.5	1.5	2e-12	47.2	1.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|227826521|ref|YP_002828300.1|	-	7e-12	45.5	0.1	9e-12	45.2	0.1	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_25	PF13649.6	gi|227826521|ref|YP_002828300.1|	-	1.9e-11	44.5	0.0	2.9e-11	43.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227826521|ref|YP_002828300.1|	-	1.3e-10	41.0	0.3	1.6e-10	40.7	0.3	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
GCD14	PF08704.10	gi|227826521|ref|YP_002828300.1|	-	2.6e-09	37.1	0.0	3.3e-09	36.8	0.0	1.0	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltr_RsmB-F	PF01189.17	gi|227826521|ref|YP_002828300.1|	-	5.1e-09	36.1	0.0	1.7e-06	27.8	0.0	2.2	1	1	1	2	2	2	2	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_3	PF01596.17	gi|227826521|ref|YP_002828300.1|	-	5.4e-09	35.5	0.1	6.8e-09	35.2	0.1	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.6	gi|227826521|ref|YP_002828300.1|	-	2.8e-08	34.7	0.0	3.7e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|227826521|ref|YP_002828300.1|	-	8.8e-08	31.8	0.0	1.5e-07	31.0	0.0	1.3	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|227826521|ref|YP_002828300.1|	-	2.6e-07	30.7	1.7	3.9e-07	30.1	0.2	1.7	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|227826521|ref|YP_002828300.1|	-	3.5e-07	29.9	0.1	7.1e-07	29.0	0.0	1.4	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_11	PF08241.12	gi|227826521|ref|YP_002828300.1|	-	3.6e-07	30.7	0.0	6e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|227826521|ref|YP_002828300.1|	-	9.3e-07	28.5	0.0	1.8e-06	27.6	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|227826521|ref|YP_002828300.1|	-	1.2e-06	28.3	0.2	1.4e-05	24.9	0.2	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.15	gi|227826521|ref|YP_002828300.1|	-	3.8e-05	23.4	0.0	4.7e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_12	PF08242.12	gi|227826521|ref|YP_002828300.1|	-	6.1e-05	23.7	0.0	0.00011	22.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|227826521|ref|YP_002828300.1|	-	8.6e-05	22.1	0.2	0.00055	19.4	0.0	2.0	2	0	0	2	2	2	1	Putative	methyltransferase
DOT1	PF08123.13	gi|227826521|ref|YP_002828300.1|	-	0.0001	21.9	0.0	0.00018	21.1	0.0	1.4	1	0	0	1	1	1	1	Histone	methylation	protein	DOT1
Methyltransf_23	PF13489.6	gi|227826521|ref|YP_002828300.1|	-	0.00017	21.5	0.0	0.00024	21.0	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|227826521|ref|YP_002828300.1|	-	0.00019	20.7	0.0	0.00024	20.3	0.0	1.2	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_32	PF13679.6	gi|227826521|ref|YP_002828300.1|	-	0.0041	17.1	0.0	0.0053	16.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|227826521|ref|YP_002828300.1|	-	0.0052	16.9	0.0	0.12	12.5	0.0	2.1	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
N6_Mtase	PF02384.16	gi|227826521|ref|YP_002828300.1|	-	0.016	14.5	0.0	0.023	14.0	0.0	1.2	1	0	0	1	1	1	0	N-6	DNA	Methylase
N6_N4_Mtase	PF01555.18	gi|227826521|ref|YP_002828300.1|	-	0.027	14.2	0.4	0.063	13.0	0.0	1.7	2	0	0	2	2	2	0	DNA	methylase
CmcI	PF04989.12	gi|227826521|ref|YP_002828300.1|	-	0.029	14.1	0.0	0.047	13.4	0.0	1.4	1	1	0	1	1	1	0	Cephalosporin	hydroxylase
TRM	PF02005.16	gi|227826521|ref|YP_002828300.1|	-	0.13	11.4	0.0	0.2	10.8	0.0	1.3	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
RrnaAD	PF00398.20	gi|227826521|ref|YP_002828300.1|	-	0.14	11.2	0.0	0.19	10.7	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
CbiD	PF01888.17	gi|227826522|ref|YP_002828301.1|	-	3.3e-70	236.3	5.0	4.2e-70	235.9	5.0	1.1	1	0	0	1	1	1	1	CbiD
TP_methylase	PF00590.20	gi|227826523|ref|YP_002828302.1|	-	3.1e-38	131.9	0.1	3.9e-38	131.5	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Glyco_hydro_3_C	PF01915.22	gi|227826523|ref|YP_002828302.1|	-	0.0072	16.3	0.0	0.0088	16.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
CbiC	PF02570.15	gi|227826524|ref|YP_002828303.1|	-	1.4e-48	165.2	2.2	1.8e-48	164.8	2.2	1.2	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
CbiX	PF01903.17	gi|227826524|ref|YP_002828303.1|	-	1.8e-21	76.4	0.0	3.3e-21	75.6	0.0	1.5	1	0	0	1	1	1	1	CbiX
CbiK	PF06180.11	gi|227826524|ref|YP_002828303.1|	-	0.062	12.6	0.0	0.087	12.1	0.0	1.2	1	0	0	1	1	1	0	Cobalt	chelatase	(CbiK)
DHquinase_II	PF01220.19	gi|227826524|ref|YP_002828303.1|	-	0.093	12.4	0.0	1.8	8.2	0.0	2.3	2	0	0	2	2	2	0	Dehydroquinase	class	II
DUF3463	PF11946.8	gi|227826525|ref|YP_002828304.1|	-	1.5e-33	115.5	2.3	2.3e-33	114.8	2.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3463)
Radical_SAM	PF04055.21	gi|227826525|ref|YP_002828304.1|	-	1.8e-18	67.5	0.1	3.7e-18	66.5	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227826525|ref|YP_002828304.1|	-	4.2e-08	33.6	0.5	7.4e-07	29.5	0.0	2.5	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|227826525|ref|YP_002828304.1|	-	0.0055	16.8	0.7	0.049	13.8	0.0	2.6	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain
Lactamase_B	PF00753.27	gi|227826526|ref|YP_002828305.1|	-	6.3e-08	32.9	1.5	2.1e-07	31.2	1.5	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227826526|ref|YP_002828305.1|	-	0.23	10.9	1.3	0.44	10.0	0.9	1.8	2	1	0	2	2	2	0	Beta-lactamase	superfamily	domain
T2SSF	PF00482.23	gi|227826527|ref|YP_002828306.1|	-	2.8e-10	40.2	1.1	9.2e-08	32.1	0.0	3.2	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
DUF1016_N	PF17761.1	gi|227826527|ref|YP_002828306.1|	-	0.0025	18.0	0.1	0.006	16.7	0.1	1.7	1	0	0	1	1	1	1	DUF1016	N-terminal	domain
Chordopox_A30L	PF06015.12	gi|227826527|ref|YP_002828306.1|	-	0.12	12.3	0.0	0.33	10.8	0.0	1.8	1	0	0	1	1	1	0	Chordopoxvirus	A30L	protein
T2SSE	PF00437.20	gi|227826528|ref|YP_002828307.1|	-	5.1e-45	153.7	0.0	7.8e-45	153.1	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|227826528|ref|YP_002828307.1|	-	0.0074	16.8	0.0	0.068	13.7	0.0	2.4	3	0	0	3	3	3	1	ABC	transporter
AAA_29	PF13555.6	gi|227826528|ref|YP_002828307.1|	-	0.015	15.0	0.0	0.029	14.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|227826528|ref|YP_002828307.1|	-	0.028	14.9	2.1	0.046	14.2	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|227826528|ref|YP_002828307.1|	-	0.045	13.1	0.1	0.084	12.2	0.1	1.5	1	1	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_22	PF13401.6	gi|227826528|ref|YP_002828307.1|	-	0.13	12.5	0.0	0.28	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DEAD	PF00270.29	gi|227826528|ref|YP_002828307.1|	-	0.13	12.0	0.0	0.27	11.0	0.0	1.4	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
VQ	PF05678.14	gi|227826528|ref|YP_002828307.1|	-	0.15	11.6	0.0	0.25	10.9	0.0	1.3	1	0	0	1	1	1	0	VQ	motif
DUF3300	PF11737.8	gi|227826528|ref|YP_002828307.1|	-	0.17	11.4	0.0	0.29	10.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3300)
ATPase	PF06745.13	gi|227826529|ref|YP_002828308.1|	-	3.5e-16	59.3	0.4	4.2e-16	59.0	0.4	1.0	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|227826529|ref|YP_002828308.1|	-	0.0005	19.3	1.1	0.56	9.3	0.4	2.1	1	1	1	2	2	2	2	PAXNEB	protein
DUF835	PF05763.12	gi|227826529|ref|YP_002828308.1|	-	0.00094	18.9	1.6	0.0018	18.0	1.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
AAA_25	PF13481.6	gi|227826529|ref|YP_002828308.1|	-	0.0017	17.9	0.0	0.0027	17.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|227826529|ref|YP_002828308.1|	-	0.0037	16.6	0.1	0.0084	15.4	0.1	1.7	1	1	0	1	1	1	1	Rad51
AAA_24	PF13479.6	gi|227826529|ref|YP_002828308.1|	-	0.0061	16.3	0.2	0.011	15.4	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
DnaB_C	PF03796.15	gi|227826529|ref|YP_002828308.1|	-	0.02	14.2	0.0	0.18	11.1	0.0	2.0	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
RNA_helicase	PF00910.22	gi|227826529|ref|YP_002828308.1|	-	0.04	14.3	0.3	0.099	13.0	0.1	1.7	2	0	0	2	2	2	0	RNA	helicase
AAA_5	PF07728.14	gi|227826529|ref|YP_002828308.1|	-	0.064	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.7	gi|227826529|ref|YP_002828308.1|	-	0.068	12.1	0.4	0.11	11.4	0.4	1.3	1	1	0	1	1	1	0	AAA-like	domain
DUF2075	PF09848.9	gi|227826529|ref|YP_002828308.1|	-	0.081	12.2	0.1	0.13	11.4	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.6	gi|227826529|ref|YP_002828308.1|	-	0.12	12.4	0.7	0.92	9.6	0.7	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|227826529|ref|YP_002828308.1|	-	0.16	12.1	0.0	0.25	11.5	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
Arch_flagellin	PF01917.16	gi|227826530|ref|YP_002828309.1|	-	0.0068	16.6	0.1	0.0094	16.2	0.1	1.3	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.16	gi|227826531|ref|YP_002828310.1|	-	3.6e-09	37.0	8.4	4.1e-09	36.8	8.4	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
Rax2	PF12768.7	gi|227826531|ref|YP_002828310.1|	-	0.014	14.8	1.0	0.021	14.3	0.3	1.4	1	1	0	1	1	1	0	Cortical	protein	marker	for	cell	polarity
Pilin_N	PF07790.11	gi|227826531|ref|YP_002828310.1|	-	0.04	14.8	11.1	0.12	13.3	11.1	1.8	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
Proteasome_A_N	PF10584.9	gi|227826531|ref|YP_002828310.1|	-	0.045	13.4	2.3	4.3	7.1	0.0	2.9	3	0	0	3	3	3	0	Proteasome	subunit	A	N-terminal	signature
Pex24p	PF06398.11	gi|227826532|ref|YP_002828311.1|	-	0.0037	16.3	0.6	0.0068	15.4	0.4	1.5	2	0	0	2	2	2	1	Integral	peroxisomal	membrane	peroxin
DUF2140	PF09911.9	gi|227826532|ref|YP_002828311.1|	-	0.0065	16.0	0.9	0.013	15.1	0.9	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2140)
DUF241	PF03087.14	gi|227826532|ref|YP_002828311.1|	-	0.0066	16.3	0.5	0.014	15.2	0.1	1.7	2	0	0	2	2	2	1	Arabidopsis	protein	of	unknown	function
Phage_holin_6_1	PF09682.10	gi|227826532|ref|YP_002828311.1|	-	0.011	16.2	0.6	0.37	11.2	0.0	2.3	2	0	0	2	2	2	0	Bacteriophage	holin	of	superfamily	6	(Holin_LLH)
LETM1	PF07766.13	gi|227826532|ref|YP_002828311.1|	-	0.031	13.6	4.0	0.053	12.9	3.6	1.5	1	1	0	1	1	1	0	LETM1-like	protein
CLN3	PF02487.17	gi|227826532|ref|YP_002828311.1|	-	0.061	12.4	0.6	0.082	11.9	0.6	1.2	1	0	0	1	1	1	0	CLN3	protein
CCDC24	PF15669.5	gi|227826532|ref|YP_002828311.1|	-	0.062	13.2	3.4	0.083	12.8	1.8	1.9	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	24	family
VPS28	PF03997.12	gi|227826532|ref|YP_002828311.1|	-	0.087	12.5	4.2	0.12	12.0	3.0	1.8	1	1	1	2	2	2	0	VPS28	protein
ZYG-11_interact	PF05884.12	gi|227826532|ref|YP_002828311.1|	-	0.12	11.8	2.4	0.23	10.8	2.4	1.4	1	0	0	1	1	1	0	Interactor	of	ZYG-11
RapA_C	PF12137.8	gi|227826532|ref|YP_002828311.1|	-	0.15	11.0	4.4	0.27	10.2	4.4	1.3	1	0	0	1	1	1	0	RNA	polymerase	recycling	family	C-terminal
DUF4834	PF16118.5	gi|227826532|ref|YP_002828311.1|	-	0.19	12.7	0.3	0.19	12.7	0.3	1.6	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4834)
Spore_GerAC	PF05504.11	gi|227826532|ref|YP_002828311.1|	-	1.5	9.0	6.3	0.93	9.7	3.3	2.0	2	1	1	3	3	3	0	Spore	germination	B3/	GerAC	like,	C-terminal
Fib_alpha	PF08702.10	gi|227826532|ref|YP_002828311.1|	-	1.9	8.7	8.8	3.9	7.7	8.3	1.7	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Arch_flagellin	PF01917.16	gi|227826533|ref|YP_002828312.1|	-	2.5e-20	73.3	5.7	2.4e-19	70.1	5.7	2.2	1	1	0	1	1	1	1	Archaebacterial	flagellin
DUF2871	PF11070.8	gi|227826534|ref|YP_002828313.1|	-	0.0069	16.7	0.6	1.3	9.3	0.2	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2871)
HTH_24	PF13412.6	gi|227826537|ref|YP_002828316.1|	-	6e-09	35.3	0.1	3.6e-06	26.4	0.1	2.9	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|227826537|ref|YP_002828316.1|	-	3.9e-07	29.9	0.0	2.6e-05	24.0	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_45	PF14947.6	gi|227826537|ref|YP_002828316.1|	-	3.6e-05	23.7	6.7	0.00027	20.9	0.2	2.7	2	1	1	3	3	3	1	Winged	helix-turn-helix
MarR	PF01047.22	gi|227826537|ref|YP_002828316.1|	-	4.8e-05	23.2	0.0	0.00014	21.7	0.0	1.8	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|227826537|ref|YP_002828316.1|	-	0.00012	22.5	0.0	0.0002	21.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|227826537|ref|YP_002828316.1|	-	0.0002	21.2	0.0	0.0032	17.3	0.0	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|227826537|ref|YP_002828316.1|	-	0.0019	18.0	0.0	0.013	15.3	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|227826537|ref|YP_002828316.1|	-	0.0059	16.5	0.1	0.055	13.4	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
UPF0122	PF04297.14	gi|227826537|ref|YP_002828316.1|	-	0.009	16.2	1.8	0.021	15.0	0.1	2.2	2	0	0	2	2	2	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
NUMOD1	PF07453.13	gi|227826537|ref|YP_002828316.1|	-	0.032	14.5	1.1	0.41	11.0	0.1	2.9	2	0	0	2	2	2	0	NUMOD1	domain
HTH_10	PF04967.12	gi|227826537|ref|YP_002828316.1|	-	0.034	13.9	0.3	0.73	9.7	0.0	2.3	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_7	PF02796.15	gi|227826537|ref|YP_002828316.1|	-	0.037	14.1	0.1	0.75	9.9	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
FaeA	PF04703.12	gi|227826537|ref|YP_002828316.1|	-	0.045	14.1	0.1	11	6.5	0.0	2.4	2	0	0	2	2	2	0	FaeA-like	protein
HTH_20	PF12840.7	gi|227826537|ref|YP_002828316.1|	-	0.066	13.3	0.0	0.76	9.9	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
Rio2_N	PF09202.11	gi|227826537|ref|YP_002828316.1|	-	0.069	13.4	0.1	3.7	7.8	0.0	2.3	2	0	0	2	2	2	0	Rio2,	N-terminal
HTH_36	PF13730.6	gi|227826537|ref|YP_002828316.1|	-	0.081	12.9	0.1	0.43	10.6	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_pRha	PF09669.10	gi|227826537|ref|YP_002828316.1|	-	0.2	12.2	1.8	0.41	11.2	0.4	2.2	2	1	0	2	2	1	0	Phage	regulatory	protein	Rha	(Phage_pRha)
SdpI	PF13630.6	gi|227826539|ref|YP_002828318.1|	-	0.19	11.9	1.7	0.27	11.4	1.7	1.2	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
DDE_Tnp_IS240	PF13610.6	gi|227826540|ref|YP_002828319.1|	-	6.7e-05	23.1	1.2	0.00011	22.4	1.0	1.4	2	0	0	2	2	2	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227826540|ref|YP_002828319.1|	-	0.0095	15.4	0.0	0.018	14.5	0.0	1.4	1	1	0	1	1	1	1	Transposase	IS66	family
RHH_1	PF01402.21	gi|227826541|ref|YP_002828320.1|	-	1.6e-06	27.8	0.0	2.2e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|227826541|ref|YP_002828320.1|	-	0.015	15.5	0.1	0.018	15.2	0.1	1.1	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
AAA_31	PF13614.6	gi|227826542|ref|YP_002828321.1|	-	1.8e-08	34.5	4.4	2.1e-07	31.0	1.1	3.0	2	1	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|227826542|ref|YP_002828321.1|	-	1.5e-07	31.2	0.0	1.7e-07	30.9	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|227826542|ref|YP_002828321.1|	-	7.3e-07	29.3	0.0	1.5e-06	28.2	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|227826542|ref|YP_002828321.1|	-	6e-05	22.4	1.3	0.00035	19.8	0.0	2.3	2	1	1	3	3	3	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|227826542|ref|YP_002828321.1|	-	0.0015	18.0	0.0	0.0042	16.6	0.0	1.7	2	1	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|227826542|ref|YP_002828321.1|	-	0.0099	15.5	0.1	0.22	11.1	0.1	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
MipZ	PF09140.11	gi|227826542|ref|YP_002828321.1|	-	0.013	14.8	0.0	0.024	13.9	0.0	1.5	1	1	0	1	1	1	0	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|227826542|ref|YP_002828321.1|	-	0.015	14.8	0.3	0.037	13.5	0.0	1.8	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|227826542|ref|YP_002828321.1|	-	0.063	13.1	0.1	0.21	11.4	0.0	1.8	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
CbiA	PF01656.23	gi|227826543|ref|YP_002828322.1|	-	6.6e-09	35.9	0.0	1.4e-08	34.9	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|227826543|ref|YP_002828322.1|	-	0.00027	20.9	0.3	0.00069	19.6	0.1	1.9	2	1	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|227826543|ref|YP_002828322.1|	-	0.00031	20.3	0.0	0.00049	19.6	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|227826543|ref|YP_002828322.1|	-	0.0042	16.3	0.3	0.012	14.8	0.3	1.9	1	1	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|227826543|ref|YP_002828322.1|	-	0.022	14.1	0.0	0.034	13.4	0.0	1.2	1	0	0	1	1	1	0	ATPase	MipZ
DUF2977	PF11192.8	gi|227826543|ref|YP_002828322.1|	-	0.048	13.8	1.4	4.4	7.5	0.0	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2977)
CBP_BcsQ	PF06564.12	gi|227826543|ref|YP_002828322.1|	-	0.093	12.2	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
AAA_26	PF13500.6	gi|227826543|ref|YP_002828322.1|	-	0.094	12.5	0.2	0.4	10.5	0.2	2.1	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|227826543|ref|YP_002828322.1|	-	0.13	11.5	0.0	0.22	10.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_18	PF13238.6	gi|227826543|ref|YP_002828322.1|	-	0.65	10.5	1.8	1.1	9.8	1.8	1.5	1	1	0	1	1	1	0	AAA	domain
ADH_N	PF08240.12	gi|227826544|ref|YP_002828323.1|	-	1.6e-25	89.1	0.4	2.9e-25	88.3	0.1	1.6	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227826544|ref|YP_002828323.1|	-	1.1e-23	83.7	0.4	1.1e-23	83.7	0.4	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227826544|ref|YP_002828323.1|	-	2.8e-08	34.9	0.0	4.6e-08	34.2	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Rhodanese	PF00581.20	gi|227826544|ref|YP_002828323.1|	-	0.00062	20.3	0.0	11	6.5	0.0	3.2	3	0	0	3	3	3	2	Rhodanese-like	domain
SIS_2	PF13580.6	gi|227826544|ref|YP_002828323.1|	-	0.045	13.8	0.1	2.5	8.1	0.0	2.6	2	0	0	2	2	2	0	SIS	domain
DapB_N	PF01113.20	gi|227826544|ref|YP_002828323.1|	-	0.22	11.6	1.5	1.2	9.2	0.1	2.3	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
ParA	PF10609.9	gi|227826546|ref|YP_002828325.1|	-	3e-10	40.0	0.2	6.4e-09	35.6	0.1	2.1	1	1	1	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|227826546|ref|YP_002828325.1|	-	1.6e-08	34.6	0.0	2.1e-08	34.3	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|227826546|ref|YP_002828325.1|	-	3.4e-08	33.6	1.2	2.6e-07	30.7	1.2	2.2	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|227826546|ref|YP_002828325.1|	-	9.7e-06	25.0	0.7	4.5e-05	22.8	0.1	2.1	1	1	1	3	3	3	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|227826546|ref|YP_002828325.1|	-	0.00062	19.3	0.1	0.0043	16.6	0.1	2.0	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
APS_kinase	PF01583.20	gi|227826546|ref|YP_002828325.1|	-	0.002	18.0	0.0	0.0031	17.4	0.0	1.2	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_24	PF13479.6	gi|227826546|ref|YP_002828325.1|	-	0.0031	17.3	0.1	0.0048	16.6	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|227826546|ref|YP_002828325.1|	-	0.0084	15.3	0.1	0.012	14.7	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
IstB_IS21	PF01695.17	gi|227826546|ref|YP_002828325.1|	-	0.01	15.6	0.0	0.017	14.9	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
MipZ	PF09140.11	gi|227826546|ref|YP_002828325.1|	-	0.028	13.7	0.1	0.045	13.0	0.1	1.3	1	0	0	1	1	1	0	ATPase	MipZ
VirC1	PF07015.11	gi|227826546|ref|YP_002828325.1|	-	0.034	13.4	0.0	0.08	12.2	0.0	1.6	1	1	0	1	1	1	0	VirC1	protein
CLP1_P	PF16575.5	gi|227826546|ref|YP_002828325.1|	-	0.079	12.8	0.5	0.18	11.6	0.0	1.8	3	0	0	3	3	3	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
MFS_1	PF07690.16	gi|227826547|ref|YP_002828326.1|	-	0.072	12.0	50.4	0.25	10.2	48.9	2.5	1	1	0	1	1	1	0	Major	Facilitator	Superfamily
eRF1_2	PF03464.15	gi|227826548|ref|YP_002828327.1|	-	1.9e-46	157.6	0.0	3.5e-46	156.8	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|227826548|ref|YP_002828327.1|	-	1e-21	77.5	4.1	1.9e-21	76.6	1.0	2.6	2	2	0	2	2	2	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|227826548|ref|YP_002828327.1|	-	1e-11	45.3	0.0	3.4e-11	43.5	0.0	1.8	2	0	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|227826548|ref|YP_002828327.1|	-	4.6e-09	36.6	0.0	9.4e-09	35.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|227826548|ref|YP_002828327.1|	-	0.00051	20.0	0.0	0.00094	19.2	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	1
Ribosomal_L7Ae	PF01248.26	gi|227826548|ref|YP_002828327.1|	-	0.0073	16.0	0.1	0.015	15.0	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
SpoU_sub_bind	PF08032.12	gi|227826548|ref|YP_002828327.1|	-	0.008	16.4	0.1	0.023	15.0	0.1	1.8	1	0	0	1	1	1	1	RNA	2'-O	ribose	methyltransferase	substrate	binding
NSP16	PF06460.12	gi|227826548|ref|YP_002828327.1|	-	0.029	13.5	0.0	0.091	11.9	0.0	1.7	2	0	0	2	2	2	0	Coronavirus	NSP16
IGPS	PF00218.21	gi|227826548|ref|YP_002828327.1|	-	0.03	13.5	0.1	0.049	12.8	0.1	1.3	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
Pribosyltran	PF00156.27	gi|227826549|ref|YP_002828328.1|	-	4.6e-20	71.7	0.1	7.6e-20	71.0	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|227826549|ref|YP_002828328.1|	-	0.00017	21.1	0.0	0.00023	20.7	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PNP_UDP_1	PF01048.20	gi|227826550|ref|YP_002828329.1|	-	1.1e-49	168.8	0.0	1.3e-49	168.6	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Adaptin_N	PF01602.20	gi|227826550|ref|YP_002828329.1|	-	0.13	10.8	0.0	0.16	10.5	0.0	1.1	1	0	0	1	1	1	0	Adaptin	N	terminal	region
polyprenyl_synt	PF00348.17	gi|227826552|ref|YP_002828331.1|	-	2.6e-32	111.9	1.4	3.6e-32	111.4	1.4	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
RimK	PF08443.11	gi|227826553|ref|YP_002828332.1|	-	4.4e-31	107.9	0.0	6.9e-31	107.3	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|227826553|ref|YP_002828332.1|	-	7.4e-12	45.0	0.1	1.1e-11	44.4	0.1	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|227826553|ref|YP_002828332.1|	-	2.3e-07	31.0	0.1	1.4e-06	28.4	0.0	1.9	2	0	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_YheCD	PF14398.6	gi|227826553|ref|YP_002828332.1|	-	1.1e-05	24.8	0.0	0.00085	18.6	0.0	2.7	1	1	1	2	2	2	1	YheC/D	like	ATP-grasp
ATPgrasp_ST	PF14397.6	gi|227826553|ref|YP_002828332.1|	-	1.8e-05	24.1	0.0	0.053	12.8	0.0	3.0	1	1	2	3	3	3	2	Sugar-transfer	associated	ATP-grasp
Ins134_P3_kin	PF05770.11	gi|227826553|ref|YP_002828332.1|	-	0.00048	19.7	0.2	0.013	15.0	0.0	2.2	1	1	1	2	2	2	1	Inositol	1,3,4-trisphosphate	5/6-kinase	ATP-grasp	domain
Rimk_N	PF18030.1	gi|227826553|ref|YP_002828332.1|	-	0.00084	19.7	0.0	0.002	18.5	0.0	1.7	1	0	0	1	1	1	1	RimK	PreATP-grasp	domain
RIO1	PF01163.22	gi|227826553|ref|YP_002828332.1|	-	0.0092	15.6	0.1	0.015	14.9	0.1	1.3	1	0	0	1	1	1	1	RIO1	family
HTH_AsnC-type	PF13404.6	gi|227826554|ref|YP_002828333.1|	-	1.5e-17	63.1	0.3	2.7e-17	62.3	0.3	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|227826554|ref|YP_002828333.1|	-	7e-17	60.7	1.1	1.5e-16	59.7	1.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|227826554|ref|YP_002828333.1|	-	4.9e-16	58.5	0.1	7e-16	58.0	0.1	1.2	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_11	PF08279.12	gi|227826554|ref|YP_002828333.1|	-	2e-08	34.1	0.1	5.1e-08	32.7	0.1	1.7	1	0	0	1	1	1	1	HTH	domain
NapD	PF03927.13	gi|227826554|ref|YP_002828333.1|	-	0.0003	20.8	0.0	0.00048	20.1	0.0	1.3	1	0	0	1	1	1	1	NapD	protein
MarR	PF01047.22	gi|227826554|ref|YP_002828333.1|	-	0.0014	18.5	0.2	0.0046	16.8	0.1	1.8	2	1	1	3	3	1	1	MarR	family
HTH_5	PF01022.20	gi|227826554|ref|YP_002828333.1|	-	0.0024	17.7	0.2	0.0058	16.5	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.6	gi|227826554|ref|YP_002828333.1|	-	0.0044	17.2	0.0	0.0082	16.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_28	PF13518.6	gi|227826554|ref|YP_002828333.1|	-	0.0046	17.0	0.0	0.0074	16.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|227826554|ref|YP_002828333.1|	-	0.0047	16.9	0.1	0.011	15.8	0.1	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Crp_2	PF13545.6	gi|227826554|ref|YP_002828333.1|	-	0.0049	16.8	0.0	0.039	13.9	0.0	2.1	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Transcrip_reg	PF01709.20	gi|227826554|ref|YP_002828333.1|	-	0.0051	16.3	0.1	0.049	13.0	0.1	1.9	1	1	1	2	2	2	1	Transcriptional	regulator
HTH_23	PF13384.6	gi|227826554|ref|YP_002828333.1|	-	0.0075	16.0	0.0	0.017	14.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_DeoR	PF08220.12	gi|227826554|ref|YP_002828333.1|	-	0.014	15.1	0.1	0.047	13.5	0.0	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
ACT_4	PF13291.6	gi|227826554|ref|YP_002828333.1|	-	0.018	15.6	0.1	0.18	12.4	0.0	2.3	1	1	1	2	2	2	0	ACT	domain
TrmB	PF01978.19	gi|227826554|ref|YP_002828333.1|	-	0.025	14.5	0.3	0.099	12.5	0.1	2.2	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Mga	PF05043.13	gi|227826554|ref|YP_002828333.1|	-	0.033	14.8	0.1	0.063	13.9	0.1	1.5	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227826554|ref|YP_002828333.1|	-	0.046	13.9	0.1	0.32	11.2	0.0	2.2	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|227826554|ref|YP_002828333.1|	-	0.049	13.5	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|227826554|ref|YP_002828333.1|	-	0.078	13.1	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
LPD14	PF18827.1	gi|227826554|ref|YP_002828333.1|	-	0.08	13.2	0.0	2	8.7	0.0	2.4	1	1	2	3	3	3	0	Large	polyvalent	protein-associated	domain	14
AsnC_trans_reg2	PF17805.1	gi|227826554|ref|YP_002828333.1|	-	0.099	12.8	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	AsnC-like	ligand	binding	domain
HTH_8	PF02954.19	gi|227826554|ref|YP_002828333.1|	-	0.11	12.3	0.1	0.21	11.4	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_27	PF13463.6	gi|227826554|ref|YP_002828333.1|	-	0.11	13.0	0.0	0.3	11.6	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_29	PF13551.6	gi|227826554|ref|YP_002828333.1|	-	0.11	12.5	0.0	0.18	11.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
Pyr_redox_2	PF07992.14	gi|227826555|ref|YP_002828334.1|	-	3.6e-07	29.7	0.0	8.8e-07	28.4	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|227826555|ref|YP_002828334.1|	-	1.2e-05	25.4	0.0	2.7e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|227826555|ref|YP_002828334.1|	-	2.8e-05	23.5	1.1	0.24	10.6	0.0	2.7	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|227826555|ref|YP_002828334.1|	-	8.7e-05	22.3	0.0	0.0071	16.0	0.0	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|227826555|ref|YP_002828334.1|	-	0.0025	16.6	0.0	0.028	13.1	0.0	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.17	gi|227826555|ref|YP_002828334.1|	-	0.0047	16.2	0.0	0.02	14.1	0.0	2.0	3	0	0	3	3	3	1	Thi4	family
FAD_binding_3	PF01494.19	gi|227826555|ref|YP_002828334.1|	-	0.0047	16.2	0.0	0.007	15.7	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|227826555|ref|YP_002828334.1|	-	0.032	14.2	0.0	1.4	8.9	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|227826555|ref|YP_002828334.1|	-	0.039	14.5	0.0	0.17	12.5	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|227826555|ref|YP_002828334.1|	-	0.1	11.7	0.0	0.15	11.1	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|227826555|ref|YP_002828334.1|	-	0.19	10.8	0.0	0.3	10.1	0.0	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
DUF1275	PF06912.11	gi|227826556|ref|YP_002828335.1|	-	0.12	12.3	11.9	0.17	11.8	11.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
DUF2101	PF09874.9	gi|227826556|ref|YP_002828335.1|	-	3.7	7.2	21.4	0.34	10.6	9.2	2.1	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2101)
Asparaginase_2	PF01112.18	gi|227826557|ref|YP_002828336.1|	-	7.9e-66	222.2	8.1	3.1e-42	144.7	2.8	2.0	1	1	1	2	2	2	2	Asparaginase
Metallophos_2	PF12850.7	gi|227826558|ref|YP_002828337.1|	-	5.3e-05	23.5	0.0	6.1e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
CCB1	PF12046.8	gi|227826558|ref|YP_002828337.1|	-	0.082	12.2	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B
FtsX_ECD	PF18075.1	gi|227826559|ref|YP_002828338.1|	-	0.018	15.6	0.0	0.036	14.7	0.0	1.5	1	1	0	1	1	1	0	FtsX	extracellular	domain
DAO	PF01266.24	gi|227826561|ref|YP_002828340.1|	-	2.2e-09	37.4	0.0	0.0012	18.5	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|227826561|ref|YP_002828340.1|	-	1.4e-06	27.7	0.0	0.016	14.3	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|227826561|ref|YP_002828340.1|	-	3.1e-06	26.7	0.3	0.00018	20.9	0.3	2.8	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227826561|ref|YP_002828340.1|	-	0.00034	19.9	0.0	0.00071	18.9	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227826561|ref|YP_002828340.1|	-	0.00064	18.9	0.0	0.023	13.8	0.0	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|227826561|ref|YP_002828340.1|	-	0.002	17.3	0.1	0.014	14.5	0.0	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_8	PF13450.6	gi|227826561|ref|YP_002828340.1|	-	0.0023	18.1	0.0	0.0082	16.4	0.0	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|227826561|ref|YP_002828340.1|	-	0.029	13.7	0.2	0.2	11.0	0.2	2.1	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|227826561|ref|YP_002828340.1|	-	0.031	13.5	0.0	0.11	11.7	0.0	1.9	2	0	0	2	2	2	0	Thi4	family
DUF1188	PF06690.11	gi|227826561|ref|YP_002828340.1|	-	0.041	13.4	0.0	4.7	6.7	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1188)
GDI	PF00996.18	gi|227826561|ref|YP_002828340.1|	-	0.052	12.1	0.0	0.12	10.9	0.0	1.6	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
ApbA	PF02558.16	gi|227826561|ref|YP_002828340.1|	-	0.17	11.5	0.0	0.36	10.5	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DUF2070	PF09843.9	gi|227826562|ref|YP_002828341.1|	-	3.2e-102	342.7	14.7	3.7e-102	342.5	14.7	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
DASH_Dad1	PF08649.10	gi|227826563|ref|YP_002828342.1|	-	0.13	12.5	0.7	0.22	11.8	0.3	1.6	2	0	0	2	2	2	0	DASH	complex	subunit	Dad1
Hydrolase_6	PF13344.6	gi|227826564|ref|YP_002828343.1|	-	3.6e-24	84.8	0.0	7.6e-24	83.8	0.0	1.5	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|227826564|ref|YP_002828343.1|	-	6.5e-17	61.4	0.0	1.4e-16	60.3	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD_2	PF13419.6	gi|227826564|ref|YP_002828343.1|	-	2.3e-05	24.6	0.1	0.00043	20.4	0.0	2.4	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|227826564|ref|YP_002828343.1|	-	0.00057	20.2	0.0	0.0025	18.1	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|227826564|ref|YP_002828343.1|	-	0.0046	16.6	0.2	0.045	13.4	0.1	2.2	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.12	gi|227826564|ref|YP_002828343.1|	-	0.0082	15.9	0.1	0.015	15.0	0.0	1.5	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
YhfZ_C	PF14503.6	gi|227826564|ref|YP_002828343.1|	-	0.039	13.5	0.0	0.069	12.7	0.0	1.3	1	0	0	1	1	1	0	YhfZ	C-terminal	domain
QSOX_Trx1	PF18108.1	gi|227826564|ref|YP_002828343.1|	-	0.057	13.6	0.0	0.096	12.9	0.0	1.4	1	0	0	1	1	1	0	QSOX	Trx-like	domain
FAD_binding_2	PF00890.24	gi|227826565|ref|YP_002828344.1|	-	2.7e-110	369.3	0.1	3.3e-110	369.1	0.1	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|227826565|ref|YP_002828344.1|	-	1.3e-42	144.8	0.0	2.3e-42	144.0	0.0	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
DAO	PF01266.24	gi|227826565|ref|YP_002828344.1|	-	2e-07	31.0	0.9	2.5e-06	27.3	0.8	2.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|227826565|ref|YP_002828344.1|	-	1.9e-05	23.5	0.3	0.00028	19.7	0.4	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|227826565|ref|YP_002828344.1|	-	0.00013	21.4	0.1	0.00019	20.8	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227826565|ref|YP_002828344.1|	-	0.00025	20.4	0.9	0.00073	18.9	0.9	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227826565|ref|YP_002828344.1|	-	0.00063	18.9	4.4	0.0076	15.4	2.7	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|227826565|ref|YP_002828344.1|	-	0.0013	19.0	1.0	0.0039	17.4	1.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|227826565|ref|YP_002828344.1|	-	0.0013	18.0	0.8	0.0058	15.9	0.3	2.3	3	0	0	3	3	3	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|227826565|ref|YP_002828344.1|	-	0.015	14.3	0.2	0.026	13.6	0.2	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|227826565|ref|YP_002828344.1|	-	0.11	13.0	1.5	0.43	11.2	1.5	2.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|227826565|ref|YP_002828344.1|	-	0.37	10.1	2.3	0.64	9.3	2.3	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Fer2_3	PF13085.6	gi|227826566|ref|YP_002828345.1|	-	1.1e-32	112.2	0.0	2.2e-32	111.3	0.0	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|227826566|ref|YP_002828345.1|	-	3.1e-10	40.3	2.4	3.1e-10	40.3	2.4	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227826566|ref|YP_002828345.1|	-	1.1e-09	38.7	4.0	1.1e-09	38.7	4.0	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227826566|ref|YP_002828345.1|	-	7.7e-09	35.6	15.9	1e-07	32.0	7.2	2.8	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227826566|ref|YP_002828345.1|	-	1.2e-06	29.4	4.0	1.2e-06	29.4	4.0	2.6	2	1	1	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|227826566|ref|YP_002828345.1|	-	2.2e-06	28.1	5.2	0.0076	16.8	0.1	2.9	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227826566|ref|YP_002828345.1|	-	2.2e-06	27.7	18.5	2.6e-05	24.3	9.8	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|227826566|ref|YP_002828345.1|	-	3e-06	27.4	1.2	0.018	15.2	0.1	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227826566|ref|YP_002828345.1|	-	0.00053	19.7	20.6	0.0069	16.2	2.3	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227826566|ref|YP_002828345.1|	-	0.00072	19.5	16.5	0.0015	18.5	1.2	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|227826566|ref|YP_002828345.1|	-	0.00087	20.0	2.4	0.94	10.3	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|227826566|ref|YP_002828345.1|	-	0.031	15.1	4.6	0.47	11.3	0.0	2.9	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer2	PF00111.27	gi|227826566|ref|YP_002828345.1|	-	0.035	14.1	0.5	0.035	14.1	0.5	2.1	2	1	1	3	3	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_3	PF12798.7	gi|227826566|ref|YP_002828345.1|	-	0.043	14.8	2.7	0.043	14.8	2.7	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Vac_Fusion	PF02346.16	gi|227826566|ref|YP_002828345.1|	-	0.044	13.4	0.3	0.19	11.4	0.0	2.1	2	0	0	2	2	2	0	Chordopoxvirus	multifunctional	envelope	protein	A27
Fer4_4	PF12800.7	gi|227826566|ref|YP_002828345.1|	-	0.093	13.3	0.5	0.093	13.3	0.5	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227826566|ref|YP_002828345.1|	-	0.16	12.2	16.1	0.076	13.2	9.8	2.7	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|227826566|ref|YP_002828345.1|	-	1.3	9.7	12.9	1.4	9.5	4.0	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_6	PF12837.7	gi|227826566|ref|YP_002828345.1|	-	4.3	7.6	22.0	0.28	11.3	3.4	2.9	3	0	0	3	3	3	0	4Fe-4S	binding	domain
CCG	PF02754.16	gi|227826567|ref|YP_002828346.1|	-	4.1e-31	107.0	0.3	3.3e-16	59.3	0.1	2.2	2	0	0	2	2	2	2	Cysteine-rich	domain
DUF3726	PF12525.8	gi|227826568|ref|YP_002828347.1|	-	0.15	12.2	0.0	3.8	7.7	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3726)
VWA	PF00092.28	gi|227826569|ref|YP_002828348.1|	-	3e-09	37.4	0.5	6.2e-08	33.1	0.0	2.7	2	1	1	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|227826569|ref|YP_002828348.1|	-	7.3e-06	26.6	0.1	0.00057	20.5	0.0	3.2	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|227826569|ref|YP_002828348.1|	-	7.7e-06	25.9	0.0	1.8e-05	24.7	0.0	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|227826569|ref|YP_002828348.1|	-	0.00011	21.7	0.0	0.00026	20.4	0.0	1.6	1	1	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
Rpp20	PF12328.8	gi|227826569|ref|YP_002828348.1|	-	0.013	15.4	2.8	0.025	14.6	2.8	1.4	1	0	0	1	1	1	0	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
Annexin	PF00191.20	gi|227826569|ref|YP_002828348.1|	-	0.067	13.3	0.4	0.23	11.6	0.1	2.2	2	0	0	2	2	2	0	Annexin
Baculo_p24	PF05073.12	gi|227826569|ref|YP_002828348.1|	-	0.084	12.7	3.8	0.17	11.7	3.8	1.4	1	0	0	1	1	1	0	Baculovirus	P24	capsid	protein
DUF3993	PF13158.6	gi|227826569|ref|YP_002828348.1|	-	0.13	12.5	0.2	0.94	9.7	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3993)
CSN5_C	PF18323.1	gi|227826569|ref|YP_002828348.1|	-	0.48	11.4	4.5	1.5	9.8	4.5	1.9	1	0	0	1	1	1	0	Cop9	signalosome	subunit	5	C-terminal	domain
AAA_5	PF07728.14	gi|227826570|ref|YP_002828349.1|	-	1.3e-28	99.7	0.0	3.1e-28	98.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_lid_8	PF17868.1	gi|227826570|ref|YP_002828349.1|	-	2.4e-08	33.8	0.5	7.6e-08	32.1	0.1	2.1	2	0	0	2	2	2	1	AAA	lid	domain
AAA_3	PF07726.11	gi|227826570|ref|YP_002828349.1|	-	1.8e-05	24.6	0.0	2.7e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|227826570|ref|YP_002828349.1|	-	5.1e-05	22.8	0.1	0.00049	19.6	0.0	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|227826570|ref|YP_002828349.1|	-	5.1e-05	23.7	0.3	0.00028	21.3	0.1	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227826570|ref|YP_002828349.1|	-	9.9e-05	22.8	0.2	0.00053	20.4	0.0	2.3	3	1	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|227826570|ref|YP_002828349.1|	-	0.00049	20.4	0.1	0.0028	17.9	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|227826570|ref|YP_002828349.1|	-	0.0011	18.8	0.0	0.0026	17.5	0.0	1.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|227826570|ref|YP_002828349.1|	-	0.003	16.7	0.0	0.0058	15.8	0.0	1.4	1	0	0	1	1	1	1	MCM	P-loop	domain
EF-hand_14	PF17959.1	gi|227826570|ref|YP_002828349.1|	-	0.013	15.8	0.2	5.1	7.5	0.0	2.5	2	0	0	2	2	2	0	EF-hand	domain
IstB_IS21	PF01695.17	gi|227826570|ref|YP_002828349.1|	-	0.018	14.8	0.0	0.033	13.9	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|227826570|ref|YP_002828349.1|	-	0.019	14.5	0.0	0.031	13.8	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_33	PF13671.6	gi|227826570|ref|YP_002828349.1|	-	0.043	14.0	0.0	0.13	12.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
YkyA	PF10368.9	gi|227826570|ref|YP_002828349.1|	-	0.052	13.2	4.7	0.034	13.8	1.8	2.0	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
RuvB_N	PF05496.12	gi|227826570|ref|YP_002828349.1|	-	0.086	12.6	0.3	0.52	10.0	0.1	2.3	2	1	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_30	PF13604.6	gi|227826570|ref|YP_002828349.1|	-	0.11	12.2	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF2175	PF09943.9	gi|227826570|ref|YP_002828349.1|	-	7	7.0	6.5	14	6.1	1.0	3.2	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
tRNA_anti-codon	PF01336.25	gi|227826571|ref|YP_002828350.1|	-	2.8e-06	27.2	0.5	3.7e-06	26.8	0.5	1.2	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|227826571|ref|YP_002828350.1|	-	8.1e-06	25.7	0.8	1e-05	25.3	0.8	1.1	1	0	0	1	1	1	1	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|227826571|ref|YP_002828350.1|	-	0.086	12.5	0.0	0.098	12.3	0.0	1.1	1	0	0	1	1	1	0	Cell	division	control	protein	24,	OB	domain	3
PqqD	PF05402.12	gi|227826572|ref|YP_002828351.1|	-	1e-12	48.2	0.2	1.5e-12	47.6	0.2	1.3	1	1	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
STN	PF07660.14	gi|227826572|ref|YP_002828351.1|	-	0.097	12.5	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	Secretin	and	TonB	N	terminus	short	domain
MoeA_N	PF03453.17	gi|227826573|ref|YP_002828352.1|	-	2.7e-35	121.4	0.0	5.7e-35	120.4	0.0	1.5	2	0	0	2	2	2	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|227826573|ref|YP_002828352.1|	-	1.1e-23	83.5	0.0	1.8e-23	82.8	0.0	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|227826573|ref|YP_002828352.1|	-	2.4e-13	50.1	0.0	6.2e-13	48.7	0.0	1.7	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
7TMR-HDED	PF07697.11	gi|227826573|ref|YP_002828352.1|	-	0.2	11.8	0.0	0.34	11.0	0.0	1.3	1	0	0	1	1	1	0	7TM-HD	extracellular
GHMP_kinases_N	PF00288.26	gi|227826574|ref|YP_002828353.1|	-	1.4e-14	54.1	1.2	1.4e-14	54.1	1.2	1.8	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|227826574|ref|YP_002828353.1|	-	3.4e-06	27.3	0.0	8.2e-06	26.1	0.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Cys_Met_Meta_PP	PF01053.20	gi|227826575|ref|YP_002828354.1|	-	1.2e-126	422.3	0.1	1.4e-126	422.1	0.1	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|227826575|ref|YP_002828354.1|	-	1.7e-07	30.8	0.0	3.5e-07	29.7	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|227826575|ref|YP_002828354.1|	-	8.8e-06	24.9	0.0	1.5e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Aminotransferase	class-V
GDC-P	PF02347.16	gi|227826575|ref|YP_002828354.1|	-	0.00051	19.0	0.0	0.00071	18.5	0.0	1.2	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Beta_elim_lyase	PF01212.21	gi|227826575|ref|YP_002828354.1|	-	0.00081	18.8	0.1	0.0098	15.2	0.1	2.2	1	1	0	1	1	1	1	Beta-eliminating	lyase
Met_gamma_lyase	PF06838.11	gi|227826575|ref|YP_002828354.1|	-	0.0071	14.9	0.0	0.33	9.4	0.0	2.1	1	1	0	1	1	1	1	Methionine	gamma-lyase
zf-C2H2_4	PF13894.6	gi|227826576|ref|YP_002828355.1|	-	0.1	13.5	0.6	0.2	12.6	0.6	1.5	1	0	0	1	1	1	0	C2H2-type	zinc	finger
DUF4930	PF16284.5	gi|227826576|ref|YP_002828355.1|	-	0.1	12.6	0.1	0.13	12.3	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4930)
SinI	PF08671.10	gi|227826577|ref|YP_002828356.1|	-	0.083	12.7	0.1	0.2	11.5	0.1	1.7	1	0	0	1	1	1	0	Anti-repressor	SinI
DUF1152	PF06626.12	gi|227826578|ref|YP_002828357.1|	-	5.4e-116	386.9	0.0	6.2e-116	386.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1152)
Glyco_transf_28	PF03033.20	gi|227826578|ref|YP_002828357.1|	-	0.14	12.2	0.0	1.1	9.2	0.0	2.3	2	0	0	2	2	2	0	Glycosyltransferase	family	28	N-terminal	domain
DnaB_2	PF07261.11	gi|227826579|ref|YP_002828358.1|	-	0.017	14.9	0.0	0.063	13.0	0.0	1.9	2	0	0	2	2	2	0	Replication	initiation	and	membrane	attachment
DUF3883	PF13020.6	gi|227826579|ref|YP_002828358.1|	-	0.025	14.6	0.1	0.051	13.6	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3883)
UBA_2	PF08587.11	gi|227826579|ref|YP_002828358.1|	-	0.035	14.2	0.2	0.59	10.3	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin	associated	domain	(UBA)
HicB-like_2	PF15970.5	gi|227826579|ref|YP_002828358.1|	-	0.1	12.7	0.0	0.3	11.3	0.0	1.8	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
KH_1	PF00013.29	gi|227826580|ref|YP_002828359.1|	-	0.00013	21.7	3.7	0.00013	21.7	3.7	2.3	2	1	0	2	2	2	1	KH	domain
5_3_exonuc	PF01367.20	gi|227826580|ref|YP_002828359.1|	-	0.012	16.1	0.9	0.026	15.1	0.2	1.9	2	0	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
RIO1	PF01163.22	gi|227826581|ref|YP_002828360.1|	-	5.6e-65	218.5	1.0	8.1e-65	218.0	1.0	1.2	1	0	0	1	1	1	1	RIO1	family
Kdo	PF06293.14	gi|227826581|ref|YP_002828360.1|	-	2e-07	30.6	0.1	7.3e-07	28.7	0.1	1.7	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.23	gi|227826581|ref|YP_002828360.1|	-	4e-05	23.6	0.0	0.00019	21.4	0.0	1.8	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
Pkinase_fungal	PF17667.1	gi|227826581|ref|YP_002828360.1|	-	0.0069	15.2	0.2	0.0071	15.2	0.2	1.2	1	1	0	1	1	1	1	Fungal	protein	kinase
Pkinase_Tyr	PF07714.17	gi|227826581|ref|YP_002828360.1|	-	0.012	14.9	0.0	0.017	14.4	0.0	1.2	1	0	0	1	1	1	0	Protein	tyrosine	kinase
TaqI_C	PF12950.7	gi|227826581|ref|YP_002828360.1|	-	0.032	14.3	0.9	0.088	12.9	0.8	1.9	1	1	0	1	1	1	0	TaqI-like	C-terminal	specificity	domain
eIF-1a	PF01176.19	gi|227826582|ref|YP_002828361.1|	-	2.9e-23	81.4	0.2	3.7e-23	81.1	0.2	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Thiolase_N	PF00108.23	gi|227826583|ref|YP_002828362.1|	-	3.1e-84	282.4	0.3	4.2e-84	282.0	0.3	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227826583|ref|YP_002828362.1|	-	1.4e-35	121.6	0.0	2.7e-35	120.7	0.0	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|227826583|ref|YP_002828362.1|	-	3.9e-06	26.6	0.6	7.1e-06	25.8	0.3	1.7	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|227826583|ref|YP_002828362.1|	-	0.00035	20.4	0.4	0.015	15.1	0.4	2.4	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
SpoVAD	PF07451.11	gi|227826583|ref|YP_002828362.1|	-	0.015	14.0	0.1	0.046	12.4	0.1	1.7	2	0	0	2	2	2	0	Stage	V	sporulation	protein	AD	(SpoVAD)
UPF0004	PF00919.20	gi|227826584|ref|YP_002828363.1|	-	3.1e-24	84.9	0.1	5.5e-24	84.1	0.1	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
Radical_SAM	PF04055.21	gi|227826584|ref|YP_002828363.1|	-	1.2e-23	84.4	0.0	2.5e-23	83.3	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
TRAM	PF01938.20	gi|227826584|ref|YP_002828363.1|	-	8.7e-10	38.4	0.1	1.8e-09	37.5	0.1	1.6	1	0	0	1	1	1	1	TRAM	domain
TRAM_2	PF18693.1	gi|227826584|ref|YP_002828363.1|	-	0.0018	18.4	0.1	0.0077	16.4	0.1	2.1	1	1	0	1	1	1	1	TRAM	domain
eIF-5_eIF-2B	PF01873.17	gi|227826585|ref|YP_002828364.1|	-	9.9e-32	109.3	0.7	1.2e-31	109.0	0.7	1.1	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
SUI1	PF01253.22	gi|227826585|ref|YP_002828364.1|	-	0.017	15.6	0.0	0.026	15.0	0.0	1.4	1	0	0	1	1	1	0	Translation	initiation	factor	SUI1
BTB_3	PF16017.5	gi|227826585|ref|YP_002828364.1|	-	0.031	14.4	0.0	0.047	13.8	0.0	1.5	1	1	0	1	1	1	0	BTB/POZ	domain
Lar_restr_allev	PF14354.6	gi|227826585|ref|YP_002828364.1|	-	0.056	13.8	0.5	0.12	12.8	0.5	1.5	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF424	PF04242.13	gi|227826586|ref|YP_002828365.1|	-	1.1e-27	96.1	0.8	1.2e-27	96.0	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
NMD3	PF04981.13	gi|227826587|ref|YP_002828366.1|	-	2.6e-49	167.9	3.2	3e-49	167.7	3.2	1.0	1	0	0	1	1	1	1	NMD3	family
zf-C4pol	PF14260.6	gi|227826587|ref|YP_002828366.1|	-	0.06	13.8	3.7	6.1	7.4	1.4	2.6	2	1	0	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
zf-C2HCIx2C	PF10782.9	gi|227826587|ref|YP_002828366.1|	-	0.096	12.6	4.0	5.3	7.0	0.7	3.0	2	1	0	2	2	2	0	Zinc-finger
Rpr2	PF04032.16	gi|227826587|ref|YP_002828366.1|	-	0.21	11.9	4.8	1.1	9.6	0.6	2.7	3	1	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|227826587|ref|YP_002828366.1|	-	0.65	10.1	5.1	50	4.0	4.3	2.9	2	1	0	2	2	2	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|227826587|ref|YP_002828366.1|	-	1.2	9.1	5.5	45	4.1	0.0	3.4	3	0	0	3	3	3	0	Nudix	N-terminal
RNase_HII	PF01351.18	gi|227826588|ref|YP_002828367.1|	-	6.6e-45	153.4	0.0	7.5e-45	153.2	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
TGS	PF02824.21	gi|227826589|ref|YP_002828368.1|	-	2.8e-20	72.1	0.0	5.1e-20	71.3	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
MMR_HSR1_Xtn	PF16897.5	gi|227826589|ref|YP_002828368.1|	-	9e-06	25.7	0.1	1.8e-05	24.7	0.1	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
T2SSF	PF00482.23	gi|227826590|ref|YP_002828369.1|	-	4.1e-18	65.5	2.2	2.9e-10	40.2	0.4	4.6	7	0	0	7	7	7	2	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|227826591|ref|YP_002828370.1|	-	4.1e-45	154.0	0.1	1.9e-44	151.8	0.0	2.0	1	1	1	2	2	2	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|227826591|ref|YP_002828370.1|	-	0.018	15.6	0.0	0.041	14.4	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|227826591|ref|YP_002828370.1|	-	0.053	13.1	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
PCMT	PF01135.19	gi|227826591|ref|YP_002828370.1|	-	0.062	13.0	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NB-ARC	PF00931.22	gi|227826591|ref|YP_002828370.1|	-	0.091	11.9	0.2	4.9	6.2	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
AAA_29	PF13555.6	gi|227826591|ref|YP_002828370.1|	-	0.1	12.4	0.1	0.24	11.2	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|227826591|ref|YP_002828370.1|	-	0.1	12.7	0.0	0.24	11.5	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_19	PF13245.6	gi|227826591|ref|YP_002828370.1|	-	0.11	12.9	0.0	1.1	9.6	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|227826591|ref|YP_002828370.1|	-	0.16	11.6	0.0	0.27	10.8	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|227826591|ref|YP_002828370.1|	-	0.21	11.3	0.1	0.73	9.5	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Glyco_trans_2_3	PF13632.6	gi|227826592|ref|YP_002828371.1|	-	1.6e-24	86.9	1.1	2.1e-24	86.5	0.1	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|227826592|ref|YP_002828371.1|	-	7e-23	81.7	0.0	1.1e-22	81.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|227826592|ref|YP_002828371.1|	-	1.5e-18	67.2	0.6	2.1e-18	66.7	0.6	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|227826592|ref|YP_002828371.1|	-	6.4e-15	55.0	0.0	1.3e-14	54.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|227826592|ref|YP_002828371.1|	-	3.3e-08	33.4	0.5	2.4e-07	30.5	0.5	2.1	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Cellulose_synt	PF03552.14	gi|227826592|ref|YP_002828371.1|	-	4.6e-05	22.1	1.3	9e-05	21.2	1.3	1.4	1	0	0	1	1	1	1	Cellulose	synthase
Pyrophosphatase	PF00719.19	gi|227826593|ref|YP_002828372.1|	-	8e-58	194.8	0.2	9e-58	194.6	0.2	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
HD_3	PF13023.6	gi|227826594|ref|YP_002828373.1|	-	3e-14	53.3	0.0	1.8e-13	50.8	0.0	1.9	1	1	0	1	1	1	1	HD	domain
HD_2	PF12917.7	gi|227826594|ref|YP_002828373.1|	-	1.6e-13	50.8	0.1	2.1e-12	47.2	0.1	2.0	1	1	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD	PF01966.22	gi|227826594|ref|YP_002828373.1|	-	3.2e-05	24.1	0.1	0.00079	19.6	0.1	2.3	1	1	0	1	1	1	1	HD	domain
HDOD	PF08668.12	gi|227826594|ref|YP_002828373.1|	-	0.062	12.8	0.0	0.095	12.2	0.0	1.3	1	0	0	1	1	1	0	HDOD	domain
Phos_pyr_kin	PF08543.12	gi|227826595|ref|YP_002828374.1|	-	2.7e-69	233.3	0.2	3.7e-69	232.8	0.2	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|227826595|ref|YP_002828374.1|	-	3.3e-49	166.7	0.0	5.2e-49	166.0	0.0	1.3	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|227826595|ref|YP_002828374.1|	-	2.9e-09	36.7	0.0	4.5e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
DUF1848	PF08902.11	gi|227826595|ref|YP_002828374.1|	-	0.016	14.9	0.3	0.042	13.6	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1848)
MoaE	PF02391.17	gi|227826596|ref|YP_002828375.1|	-	3e-18	66.1	0.0	4.4e-18	65.6	0.0	1.2	1	0	0	1	1	1	1	MoaE	protein
ThiS	PF02597.20	gi|227826596|ref|YP_002828375.1|	-	1e-12	48.5	0.0	2.4e-12	47.3	0.0	1.7	1	0	0	1	1	1	1	ThiS	family
DUF2481	PF10654.9	gi|227826597|ref|YP_002828376.1|	-	0.12	12.4	2.5	0.15	12.1	1.9	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2481)
Fer4_8	PF13183.6	gi|227826598|ref|YP_002828377.1|	-	5.2e-09	36.4	3.4	1.1e-08	35.4	3.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227826598|ref|YP_002828377.1|	-	1.9e-07	31.0	2.0	0.0037	17.4	0.1	2.7	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227826598|ref|YP_002828377.1|	-	7e-07	29.7	4.2	1.2e-06	29.0	3.2	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227826598|ref|YP_002828377.1|	-	1.2e-06	29.0	4.5	3e-06	27.7	4.5	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227826598|ref|YP_002828377.1|	-	2.4e-06	27.6	3.8	5.3e-06	26.5	3.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
FAD_binding_4	PF01565.23	gi|227826598|ref|YP_002828377.1|	-	6.7e-06	25.9	0.0	1.2e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_9	PF13187.6	gi|227826598|ref|YP_002828377.1|	-	1.9e-05	24.7	4.2	0.0001	22.4	4.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227826598|ref|YP_002828377.1|	-	0.0004	21.3	2.3	0.13	13.2	0.1	2.9	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|227826598|ref|YP_002828377.1|	-	0.0046	17.1	3.3	1.6	9.0	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227826598|ref|YP_002828377.1|	-	0.0064	16.3	17.6	0.015	15.1	3.0	2.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
D5_N	PF08706.11	gi|227826598|ref|YP_002828377.1|	-	0.007	16.6	0.1	2.3	8.5	0.0	2.8	2	0	0	2	2	2	1	D5	N	terminal	like
Fer4_22	PF17179.4	gi|227826598|ref|YP_002828377.1|	-	0.028	15.3	3.3	2.6	8.9	0.7	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227826598|ref|YP_002828377.1|	-	0.032	14.3	15.9	0.16	12.1	2.0	2.7	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|227826598|ref|YP_002828377.1|	-	0.034	14.6	10.7	0.12	12.9	1.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|227826598|ref|YP_002828377.1|	-	0.045	13.5	8.2	0.25	11.1	0.2	3.2	3	0	0	3	3	3	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.7	gi|227826598|ref|YP_002828377.1|	-	2	9.6	19.5	0.96	10.5	5.1	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
GHMP_kinases_N	PF00288.26	gi|227826599|ref|YP_002828378.1|	-	6.6e-07	29.5	1.1	1.4e-06	28.5	1.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
PPS_PS	PF02006.16	gi|227826600|ref|YP_002828379.1|	-	1.1e-74	249.9	3.1	1.2e-74	249.6	3.1	1.0	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
Pantoate_transf	PF02548.15	gi|227826601|ref|YP_002828380.1|	-	1.2e-106	355.8	0.0	1.4e-106	355.7	0.0	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|227826601|ref|YP_002828380.1|	-	1.6e-05	24.5	0.3	0.00023	20.7	0.2	2.3	1	1	2	3	3	3	2	Phosphoenolpyruvate	phosphomutase
ABC_tran	PF00005.27	gi|227826603|ref|YP_002828382.1|	-	4.2e-25	88.9	0.0	6.3e-25	88.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227826603|ref|YP_002828382.1|	-	1.1e-09	38.6	1.3	5.7e-05	23.1	0.5	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|227826603|ref|YP_002828382.1|	-	0.00045	20.8	1.9	0.00099	19.7	1.8	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|227826603|ref|YP_002828382.1|	-	0.008	15.9	0.0	0.011	15.5	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|227826603|ref|YP_002828382.1|	-	0.0088	15.8	0.0	0.016	14.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|227826603|ref|YP_002828382.1|	-	0.011	15.7	0.0	0.016	15.1	0.0	1.4	1	1	0	1	1	1	0	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|227826603|ref|YP_002828382.1|	-	0.013	15.0	2.0	2.4	7.5	0.1	2.5	2	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|227826603|ref|YP_002828382.1|	-	0.036	13.7	0.0	0.068	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|227826603|ref|YP_002828382.1|	-	0.04	13.0	0.1	0.064	12.3	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
BCA_ABC_TP_C	PF12399.8	gi|227826603|ref|YP_002828382.1|	-	0.062	13.2	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SRP54	PF00448.22	gi|227826603|ref|YP_002828382.1|	-	0.08	12.6	0.1	0.16	11.6	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
MeaB	PF03308.16	gi|227826603|ref|YP_002828382.1|	-	0.13	11.2	0.0	0.19	10.7	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_29	PF13555.6	gi|227826603|ref|YP_002828382.1|	-	0.15	11.8	0.1	0.31	10.8	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC2_membrane_3	PF12698.7	gi|227826604|ref|YP_002828383.1|	-	1.9e-12	47.0	42.1	2.4e-12	46.6	42.1	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|227826604|ref|YP_002828383.1|	-	6.6e-12	45.3	23.5	9.9e-12	44.7	23.5	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|227826604|ref|YP_002828383.1|	-	6.1e-05	23.1	16.0	6.1e-05	23.1	16.0	3.2	2	1	1	3	3	3	1	ABC-2	family	transporter	protein
AsnC_trans_reg	PF01037.21	gi|227826605|ref|YP_002828384.1|	-	9.1e-11	41.6	0.6	1.1e-10	41.3	0.6	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|227826605|ref|YP_002828384.1|	-	0.0039	17.2	0.4	0.68	10.0	0.1	2.1	1	1	1	2	2	2	2	NapD	protein
GYD	PF08734.11	gi|227826605|ref|YP_002828384.1|	-	0.017	15.1	0.0	0.02	14.8	0.0	1.3	1	1	0	1	1	1	0	GYD	domain
RHH_5	PF07878.11	gi|227826606|ref|YP_002828385.1|	-	0.00046	20.0	0.0	0.0011	18.8	0.0	1.6	2	0	0	2	2	2	1	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
CopG_antitoxin	PF12441.8	gi|227826606|ref|YP_002828385.1|	-	0.0017	18.8	2.1	0.0018	18.8	0.0	2.1	2	1	1	3	3	3	1	CopG	antitoxin	of	type	II	toxin-antitoxin	system
Scaffolding_pro	PF11418.8	gi|227826606|ref|YP_002828385.1|	-	0.077	13.6	1.1	0.077	13.6	1.1	1.8	1	1	1	2	2	2	0	Phi29	scaffolding	protein
RHH_1	PF01402.21	gi|227826607|ref|YP_002828386.1|	-	7.3e-09	35.2	0.2	1.2e-08	34.6	0.2	1.5	1	1	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|227826607|ref|YP_002828386.1|	-	0.00015	21.6	0.7	0.00027	20.8	0.3	1.6	1	1	1	2	2	2	1	Ribbon-helix-helix	domain
Lactamase_B_3	PF13483.6	gi|227826608|ref|YP_002828387.1|	-	1.8e-32	112.5	0.4	2.3e-32	112.1	0.4	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|227826608|ref|YP_002828387.1|	-	3.9e-16	59.2	0.2	1.9e-09	37.3	0.0	2.1	1	1	1	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|227826608|ref|YP_002828387.1|	-	0.0028	17.7	4.3	0.011	15.8	3.6	2.1	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
HMGL-like	PF00682.19	gi|227826609|ref|YP_002828388.1|	-	4e-76	256.1	0.7	5.1e-76	255.7	0.7	1.1	1	0	0	1	1	1	1	HMGL-like
MAF_flag10	PF01973.18	gi|227826610|ref|YP_002828389.1|	-	5e-23	81.7	0.0	6.9e-23	81.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
TPK_catalytic	PF04263.16	gi|227826610|ref|YP_002828389.1|	-	0.014	15.4	0.0	0.026	14.6	0.0	1.5	1	0	0	1	1	1	0	Thiamin	pyrophosphokinase,	catalytic	domain
HEPN	PF05168.14	gi|227826612|ref|YP_002828391.1|	-	0.00017	21.7	1.4	0.00042	20.4	1.3	1.6	1	1	0	1	1	1	1	HEPN	domain
Baseplate	PF16774.5	gi|227826614|ref|YP_002828393.1|	-	0.056	13.3	0.4	0.076	12.9	0.4	1.2	1	0	0	1	1	1	0	Baseplate	protein
PTPS	PF01242.19	gi|227826615|ref|YP_002828394.1|	-	2.6e-19	69.4	0.0	3.5e-19	69.0	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
DUF4346	PF14251.6	gi|227826617|ref|YP_002828396.1|	-	0.00012	22.0	0.0	0.00027	21.0	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4346)
Radical_SAM	PF04055.21	gi|227826617|ref|YP_002828396.1|	-	0.0098	16.3	0.3	0.042	14.2	0.3	2.1	1	1	0	1	1	1	1	Radical	SAM	superfamily
PLU-1	PF08429.11	gi|227826617|ref|YP_002828396.1|	-	0.03	13.5	0.0	0.96	8.6	0.0	2.1	1	1	0	2	2	2	0	PLU-1-like	protein
Pyr_redox_2	PF07992.14	gi|227826618|ref|YP_002828397.1|	-	2.5e-50	171.4	2.5	3.1e-50	171.1	2.5	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227826618|ref|YP_002828397.1|	-	5.2e-24	85.1	3.3	6.2e-24	84.8	0.6	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227826618|ref|YP_002828397.1|	-	3.3e-14	53.2	6.3	4.7e-14	52.7	0.8	2.7	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|227826618|ref|YP_002828397.1|	-	6.8e-06	25.4	0.2	0.065	12.4	0.0	3.1	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
HI0933_like	PF03486.14	gi|227826618|ref|YP_002828397.1|	-	3.1e-05	22.9	1.3	0.032	12.9	0.0	3.2	3	0	0	3	3	3	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|227826618|ref|YP_002828397.1|	-	3.5e-05	23.1	1.1	0.6	9.1	0.0	3.3	3	0	0	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|227826618|ref|YP_002828397.1|	-	0.00023	20.6	0.4	0.0063	15.9	0.1	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|227826618|ref|YP_002828397.1|	-	0.00028	20.1	5.3	0.49	9.4	0.0	4.0	3	2	0	4	4	4	2	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|227826618|ref|YP_002828397.1|	-	0.0096	15.2	6.7	0.18	11.0	0.3	3.2	3	1	0	3	3	3	2	Thi4	family
NAD_binding_7	PF13241.6	gi|227826618|ref|YP_002828397.1|	-	0.021	15.3	0.7	0.39	11.2	0.2	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
NAD_binding_9	PF13454.6	gi|227826618|ref|YP_002828397.1|	-	0.028	14.4	0.1	0.31	11.0	0.0	2.5	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Inositol_P	PF00459.25	gi|227826619|ref|YP_002828398.1|	-	3e-19	69.6	0.0	3.6e-19	69.3	0.0	1.1	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|227826619|ref|YP_002828398.1|	-	0.00032	20.2	0.0	0.0005	19.6	0.0	1.3	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
HP_OMP	PF01856.17	gi|227826619|ref|YP_002828398.1|	-	0.094	12.8	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Helicobacter	outer	membrane	protein
DBP10CT	PF08147.12	gi|227826619|ref|YP_002828398.1|	-	0.15	12.3	0.0	0.37	11.1	0.0	1.7	1	1	0	1	1	1	0	DBP10CT	(NUC160)	domain
AAA	PF00004.29	gi|227826620|ref|YP_002828399.1|	-	1.6e-83	277.7	0.0	8.9e-41	139.4	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|227826620|ref|YP_002828399.1|	-	2.9e-24	84.6	9.6	2.5e-13	49.6	1.6	3.3	3	0	0	3	3	3	2	AAA+	lid	domain
AAA_2	PF07724.14	gi|227826620|ref|YP_002828399.1|	-	9.2e-15	55.2	0.0	5.5e-07	29.9	0.0	3.4	3	0	0	3	3	3	2	AAA	domain	(Cdc48	subfamily)
AAA_14	PF13173.6	gi|227826620|ref|YP_002828399.1|	-	1.4e-13	51.0	0.1	8.2e-07	29.1	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
AAA_5	PF07728.14	gi|227826620|ref|YP_002828399.1|	-	2.5e-13	50.2	0.4	7.8e-05	22.7	0.0	4.1	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|227826620|ref|YP_002828399.1|	-	3.9e-12	46.2	0.0	5.6e-06	26.2	0.0	2.8	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|227826620|ref|YP_002828399.1|	-	4.3e-12	46.5	2.4	0.0048	17.2	0.0	5.1	3	2	2	5	5	5	2	AAA	domain
AAA_16	PF13191.6	gi|227826620|ref|YP_002828399.1|	-	2.1e-11	44.5	0.0	0.0057	17.1	0.0	4.5	2	2	1	4	4	4	2	AAA	ATPase	domain
AAA_18	PF13238.6	gi|227826620|ref|YP_002828399.1|	-	4.8e-10	40.1	0.0	0.00026	21.5	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|227826620|ref|YP_002828399.1|	-	2.9e-09	37.3	0.0	0.00057	20.2	0.0	3.1	2	1	0	2	2	2	2	RNA	helicase
AAA_17	PF13207.6	gi|227826620|ref|YP_002828399.1|	-	1.1e-08	35.5	0.0	0.0082	16.6	0.0	3.9	3	1	0	3	3	2	2	AAA	domain
Vps4_C	PF09336.10	gi|227826620|ref|YP_002828399.1|	-	9.5e-08	31.9	0.5	0.00049	20.0	0.0	3.3	3	0	0	3	3	2	2	Vps4	C	terminal	oligomerisation	domain
Mg_chelatase	PF01078.21	gi|227826620|ref|YP_002828399.1|	-	1.9e-07	30.7	2.6	0.0037	16.7	0.2	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Rad17	PF03215.15	gi|227826620|ref|YP_002828399.1|	-	2.2e-07	31.0	0.1	0.026	14.5	0.0	3.0	2	2	0	2	2	2	2	Rad17	P-loop	domain
IstB_IS21	PF01695.17	gi|227826620|ref|YP_002828399.1|	-	2.6e-07	30.6	0.0	0.013	15.2	0.0	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|227826620|ref|YP_002828399.1|	-	2.9e-07	30.9	0.0	0.015	15.5	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
AAA_33	PF13671.6	gi|227826620|ref|YP_002828399.1|	-	1.1e-06	28.9	0.0	0.058	13.6	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|227826620|ref|YP_002828399.1|	-	1.4e-06	28.3	0.1	0.12	12.3	0.1	3.4	2	2	1	3	3	3	2	NACHT	domain
AAA_7	PF12775.7	gi|227826620|ref|YP_002828399.1|	-	1.4e-06	27.9	0.0	0.049	13.2	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
DUF815	PF05673.13	gi|227826620|ref|YP_002828399.1|	-	1.5e-06	27.5	0.4	0.12	11.5	0.0	3.3	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF815)
TIP49	PF06068.13	gi|227826620|ref|YP_002828399.1|	-	1.8e-06	27.4	0.0	0.0056	15.9	0.0	2.6	2	1	0	2	2	2	2	TIP49	P-loop	domain
AAA_24	PF13479.6	gi|227826620|ref|YP_002828399.1|	-	2.7e-06	27.3	3.5	0.0069	16.1	0.1	3.6	4	1	0	4	4	3	2	AAA	domain
AAA_3	PF07726.11	gi|227826620|ref|YP_002828399.1|	-	4.1e-06	26.7	0.0	0.039	13.8	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|227826620|ref|YP_002828399.1|	-	7.1e-06	26.0	0.0	0.024	14.6	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_25	PF13481.6	gi|227826620|ref|YP_002828399.1|	-	7.2e-06	25.7	0.7	0.46	10.0	0.1	3.4	2	1	1	3	3	3	2	AAA	domain
ABC_tran	PF00005.27	gi|227826620|ref|YP_002828399.1|	-	4.4e-05	24.0	0.1	0.21	12.1	0.0	2.9	2	1	0	2	2	2	2	ABC	transporter
ATPase_2	PF01637.18	gi|227826620|ref|YP_002828399.1|	-	0.00011	22.2	6.9	0.087	12.7	0.0	4.4	4	2	2	6	6	4	1	ATPase	domain	predominantly	from	Archaea
Bac_DnaA	PF00308.18	gi|227826620|ref|YP_002828399.1|	-	0.00016	21.6	0.0	0.5	10.2	0.0	3.1	2	2	0	2	2	2	1	Bacterial	dnaA	protein
AAA_30	PF13604.6	gi|227826620|ref|YP_002828399.1|	-	0.00017	21.4	0.1	0.78	9.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AFG1_ATPase	PF03969.16	gi|227826620|ref|YP_002828399.1|	-	0.00039	19.4	0.6	0.48	9.3	0.2	2.7	2	1	0	2	2	2	2	AFG1-like	ATPase
MMR_HSR1	PF01926.23	gi|227826620|ref|YP_002828399.1|	-	0.00046	20.2	0.2	4.9	7.3	0.0	4.2	4	1	0	4	4	3	0	50S	ribosome-binding	GTPase
TniB	PF05621.11	gi|227826620|ref|YP_002828399.1|	-	0.00065	19.2	0.3	0.99	8.8	0.0	3.3	2	1	1	3	3	3	1	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|227826620|ref|YP_002828399.1|	-	0.00072	19.3	0.0	2	8.1	0.0	3.0	2	1	0	2	2	2	2	Sigma-54	interaction	domain
Parvo_NS1	PF01057.17	gi|227826620|ref|YP_002828399.1|	-	0.00072	18.7	0.0	0.2	10.7	0.0	2.3	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
Guanylate_kin	PF00625.21	gi|227826620|ref|YP_002828399.1|	-	0.0009	19.0	0.0	5	6.8	0.0	3.8	3	1	1	4	4	4	0	Guanylate	kinase
Sigma54_activ_2	PF14532.6	gi|227826620|ref|YP_002828399.1|	-	0.00095	19.3	0.0	0.71	10.0	0.0	2.7	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|227826620|ref|YP_002828399.1|	-	0.00097	19.0	0.0	0.84	9.4	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Adeno_IVa2	PF02456.15	gi|227826620|ref|YP_002828399.1|	-	0.0013	17.6	0.1	0.73	8.6	0.0	3.1	3	0	0	3	3	3	1	Adenovirus	IVa2	protein
Viral_helicase1	PF01443.18	gi|227826620|ref|YP_002828399.1|	-	0.0016	18.2	0.0	0.09	12.5	0.0	2.6	3	0	0	3	3	2	1	Viral	(Superfamily	1)	RNA	helicase
KTI12	PF08433.10	gi|227826620|ref|YP_002828399.1|	-	0.0022	17.5	0.0	0.11	11.9	0.0	3.1	3	0	0	3	3	3	1	Chromatin	associated	protein	KTI12
Zeta_toxin	PF06414.12	gi|227826620|ref|YP_002828399.1|	-	0.0027	17.0	0.3	0.4	9.9	0.0	2.9	3	0	0	3	3	2	1	Zeta	toxin
AAA_19	PF13245.6	gi|227826620|ref|YP_002828399.1|	-	0.003	17.9	0.0	2.9	8.2	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|227826620|ref|YP_002828399.1|	-	0.0035	16.7	0.1	3.5	6.9	0.0	2.9	2	1	0	2	2	2	0	KaiC
ResIII	PF04851.15	gi|227826620|ref|YP_002828399.1|	-	0.0036	17.3	0.2	2.5	8.1	0.0	3.0	2	1	1	3	3	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_29	PF13555.6	gi|227826620|ref|YP_002828399.1|	-	0.0038	16.9	0.0	1.9	8.3	0.0	2.6	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
Cytidylate_kin	PF02224.18	gi|227826620|ref|YP_002828399.1|	-	0.0044	16.8	0.0	0.3	10.8	0.0	2.4	2	0	0	2	2	2	1	Cytidylate	kinase
NB-ARC	PF00931.22	gi|227826620|ref|YP_002828399.1|	-	0.0047	16.1	0.0	4	6.5	0.0	2.7	2	0	0	2	2	2	0	NB-ARC	domain
ATP-synt_ab	PF00006.25	gi|227826620|ref|YP_002828399.1|	-	0.015	14.9	0.0	1.3	8.6	0.0	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
dNK	PF01712.19	gi|227826620|ref|YP_002828399.1|	-	0.016	15.0	0.1	14	5.5	0.0	3.4	3	1	0	3	3	3	0	Deoxynucleoside	kinase
SKI	PF01202.22	gi|227826620|ref|YP_002828399.1|	-	0.017	15.3	0.0	3	8.0	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
Cytidylate_kin2	PF13189.6	gi|227826620|ref|YP_002828399.1|	-	0.025	14.7	0.0	8.6	6.4	0.0	3.2	3	0	0	3	3	3	0	Cytidylate	kinase-like	family
NTPase_1	PF03266.15	gi|227826620|ref|YP_002828399.1|	-	0.027	14.4	0.0	1.3	8.9	0.0	2.6	2	0	0	2	2	2	0	NTPase
AAA_6	PF12774.7	gi|227826620|ref|YP_002828399.1|	-	0.032	13.2	0.0	6.6	5.6	0.0	2.6	2	0	0	2	2	2	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
DAP3	PF10236.9	gi|227826620|ref|YP_002828399.1|	-	0.033	13.3	0.2	16	4.5	0.0	3.2	2	1	1	3	3	3	0	Mitochondrial	ribosomal	death-associated	protein	3
PhoH	PF02562.16	gi|227826620|ref|YP_002828399.1|	-	0.036	13.5	0.7	6.4	6.2	0.3	3.0	2	1	0	2	2	2	0	PhoH-like	protein
Roc	PF08477.13	gi|227826620|ref|YP_002828399.1|	-	0.038	14.2	0.1	9.9	6.4	0.0	3.4	3	0	0	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
RsgA_GTPase	PF03193.16	gi|227826620|ref|YP_002828399.1|	-	0.041	13.8	0.0	11	5.9	0.0	2.8	2	0	0	2	2	2	0	RsgA	GTPase
Glutaredoxin	PF00462.24	gi|227826620|ref|YP_002828399.1|	-	0.041	14.1	0.0	0.76	10.0	0.0	3.0	3	0	0	3	3	2	0	Glutaredoxin
PduV-EutP	PF10662.9	gi|227826620|ref|YP_002828399.1|	-	0.044	13.5	0.1	3.1	7.5	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
PPV_E1_C	PF00519.17	gi|227826620|ref|YP_002828399.1|	-	0.057	12.2	0.0	0.52	9.1	0.0	2.0	2	0	0	2	2	2	0	Papillomavirus	helicase
IPT	PF01745.16	gi|227826620|ref|YP_002828399.1|	-	0.073	12.4	0.0	2.1	7.7	0.0	2.6	2	0	0	2	2	2	0	Isopentenyl	transferase
KAP_NTPase	PF07693.14	gi|227826620|ref|YP_002828399.1|	-	0.075	12.3	0.4	5.1	6.2	0.0	3.3	3	2	1	4	4	3	0	KAP	family	P-loop	domain
Hydin_ADK	PF17213.3	gi|227826620|ref|YP_002828399.1|	-	0.078	13.2	0.1	9.6	6.4	0.2	3.2	3	0	0	3	3	3	0	Hydin	Adenylate	kinase-like	domain
GAT	PF03127.14	gi|227826620|ref|YP_002828399.1|	-	0.091	13.1	2.8	8.1	6.8	0.1	3.6	2	1	1	3	3	2	0	GAT	domain
ATP_bind_1	PF03029.17	gi|227826620|ref|YP_002828399.1|	-	0.092	12.5	0.1	21	4.8	0.0	2.8	3	0	0	3	3	2	0	Conserved	hypothetical	ATP	binding	protein
cobW	PF02492.19	gi|227826620|ref|YP_002828399.1|	-	0.19	11.3	0.9	8.7	5.9	0.0	2.8	3	0	0	3	3	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.22	gi|227826620|ref|YP_002828399.1|	-	0.19	11.3	2.1	19	4.8	0.2	3.2	3	1	0	4	4	3	0	SRP54-type	protein,	GTPase	domain
NusB	PF01029.18	gi|227826620|ref|YP_002828399.1|	-	0.74	10.0	3.5	3.5	7.9	0.2	3.3	3	1	0	3	3	3	0	NusB	family
DAO	PF01266.24	gi|227826621|ref|YP_002828400.1|	-	1.6e-16	60.9	3.4	7.8e-15	55.3	3.4	2.7	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|227826621|ref|YP_002828400.1|	-	3.9e-14	52.8	0.3	3.8e-13	49.5	0.3	2.0	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|227826621|ref|YP_002828400.1|	-	4.5e-12	46.0	0.2	1.4e-11	44.4	0.2	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|227826621|ref|YP_002828400.1|	-	7.5e-09	35.2	0.3	1.1e-05	24.8	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|227826621|ref|YP_002828400.1|	-	1.9e-08	33.8	3.5	0.00038	19.7	2.4	2.9	3	0	0	3	3	3	2	FAD	binding	domain
Pyr_redox	PF00070.27	gi|227826621|ref|YP_002828400.1|	-	2.1e-07	31.4	5.0	0.002	18.7	0.5	2.9	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|227826621|ref|YP_002828400.1|	-	1.3e-06	27.9	1.9	6.6e-06	25.5	0.8	2.2	2	0	0	2	2	2	1	Thi4	family
FAD_oxidored	PF12831.7	gi|227826621|ref|YP_002828400.1|	-	5.4e-06	26.0	0.7	8.3e-05	22.1	0.1	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|227826621|ref|YP_002828400.1|	-	2.1e-05	23.4	3.9	0.0026	16.5	1.5	2.5	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|227826621|ref|YP_002828400.1|	-	0.00014	21.3	0.6	0.00038	19.8	0.4	1.8	2	0	0	2	2	2	1	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|227826621|ref|YP_002828400.1|	-	0.00044	19.2	1.6	0.052	12.4	0.7	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
GIDA	PF01134.22	gi|227826621|ref|YP_002828400.1|	-	0.0017	17.5	13.7	0.0032	16.6	1.1	2.8	2	1	1	3	3	3	2	Glucose	inhibited	division	protein	A
GDI	PF00996.18	gi|227826621|ref|YP_002828400.1|	-	0.0038	15.8	0.1	0.053	12.0	0.0	2.1	2	0	0	2	2	2	1	GDP	dissociation	inhibitor
Lycopene_cycl	PF05834.12	gi|227826621|ref|YP_002828400.1|	-	0.044	12.8	1.4	0.23	10.5	0.6	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
UDPG_MGDP_dh_N	PF03721.14	gi|227826621|ref|YP_002828400.1|	-	0.071	12.7	0.1	0.15	11.6	0.1	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_9	PF13454.6	gi|227826621|ref|YP_002828400.1|	-	0.11	12.5	0.4	0.28	11.2	0.4	1.7	1	0	0	1	1	1	0	FAD-NAD(P)-binding
3HCDH_N	PF02737.18	gi|227826621|ref|YP_002828400.1|	-	0.26	11.1	0.9	0.61	10.0	0.9	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|227826621|ref|YP_002828400.1|	-	0.31	10.2	4.2	0.36	10.0	1.2	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Phosphodiest	PF01663.22	gi|227826622|ref|YP_002828401.1|	-	8.8e-16	58.4	2.3	3e-15	56.7	2.3	1.8	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|227826622|ref|YP_002828401.1|	-	0.0011	18.4	0.0	0.0018	17.7	0.0	1.3	1	0	0	1	1	1	1	Metalloenzyme	superfamily
PglZ	PF08665.12	gi|227826622|ref|YP_002828401.1|	-	0.045	13.9	0.1	0.35	10.9	0.0	2.1	2	0	0	2	2	2	0	PglZ	domain
Coa1	PF08695.10	gi|227826622|ref|YP_002828401.1|	-	0.13	12.0	0.0	1.5	8.6	0.0	2.1	2	0	0	2	2	2	0	Cytochrome	oxidase	complex	assembly	protein	1
Pribosyltran	PF00156.27	gi|227826623|ref|YP_002828402.1|	-	2.5e-23	82.3	0.1	3.4e-23	81.9	0.1	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
MM_CoA_mutase	PF01642.22	gi|227826624|ref|YP_002828403.1|	-	8.6e-218	724.0	0.1	9.8e-218	723.8	0.1	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
Met_asp_mut_E	PF06368.11	gi|227826624|ref|YP_002828403.1|	-	0.088	11.3	0.3	0.16	10.4	0.3	1.4	1	0	0	1	1	1	0	Methylaspartate	mutase	E	chain	(MutE)
Glyoxalase_4	PF13669.6	gi|227826625|ref|YP_002828404.1|	-	1.4e-25	89.7	0.0	1.8e-25	89.3	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase	PF00903.25	gi|227826625|ref|YP_002828404.1|	-	3.8e-13	49.8	0.0	4.3e-13	49.6	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|227826625|ref|YP_002828404.1|	-	2.3e-10	40.9	0.1	3e-10	40.5	0.1	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Osmo_CC	PF08946.10	gi|227826625|ref|YP_002828404.1|	-	0.0034	17.6	0.4	1.4	9.3	0.3	2.4	2	0	0	2	2	2	2	Osmosensory	transporter	coiled	coil
CppA_N	PF14506.6	gi|227826625|ref|YP_002828404.1|	-	0.0095	16.0	0.1	0.022	14.8	0.1	1.8	1	1	0	1	1	1	1	CppA	N-terminal
Glyoxalase_6	PF18029.1	gi|227826625|ref|YP_002828404.1|	-	0.011	16.5	0.0	0.015	16.0	0.0	1.2	1	0	0	1	1	1	0	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|227826625|ref|YP_002828404.1|	-	0.03	14.3	0.1	0.053	13.4	0.1	1.5	1	1	0	1	1	1	0	Glyoxalase-like	domain
DUF2202	PF09968.9	gi|227826625|ref|YP_002828404.1|	-	0.06	13.2	0.0	0.29	11.0	0.0	1.9	1	1	1	2	2	2	0	Uncharacterized	protein	domain	(DUF2202)
Glyoxalase_5	PF14696.6	gi|227826625|ref|YP_002828404.1|	-	0.14	12.3	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	Hydroxyphenylpyruvate	dioxygenase,	HPPD,	N-terminal
ArsA_HSP20	PF17886.1	gi|227826626|ref|YP_002828405.1|	-	1e-13	50.6	0.0	1.5e-13	50.1	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|227826626|ref|YP_002828405.1|	-	5.4e-13	49.0	3.5	1.4e-11	44.5	3.5	2.4	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
CS	PF04969.16	gi|227826626|ref|YP_002828405.1|	-	3.5e-05	24.7	2.0	5.3e-05	24.2	2.0	1.2	1	0	0	1	1	1	1	CS	domain
PIH1_CS	PF18201.1	gi|227826626|ref|YP_002828405.1|	-	0.0011	19.3	0.1	0.0016	18.8	0.1	1.2	1	0	0	1	1	1	1	PIH1	CS-like	domain
GvpH	PF05455.11	gi|227826626|ref|YP_002828405.1|	-	0.0042	17.2	0.0	0.0067	16.5	0.0	1.3	1	0	0	1	1	1	1	GvpH
zf-ZPR1	PF03367.13	gi|227826627|ref|YP_002828406.1|	-	1.3e-28	99.8	0.0	3.4e-28	98.5	0.0	1.6	1	1	0	1	1	1	1	ZPR1	zinc-finger	domain
Lar_restr_allev	PF14354.6	gi|227826627|ref|YP_002828406.1|	-	0.0018	18.6	0.2	0.0034	17.7	0.2	1.5	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Mob_synth_C	PF06463.13	gi|227826627|ref|YP_002828406.1|	-	0.0036	17.2	0.1	0.0066	16.4	0.0	1.6	2	0	0	2	2	2	1	Molybdenum	Cofactor	Synthesis	C
TF_Zn_Ribbon	PF08271.12	gi|227826627|ref|YP_002828406.1|	-	0.014	14.8	0.9	0.76	9.3	0.0	2.7	3	0	0	3	3	3	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|227826627|ref|YP_002828406.1|	-	0.027	14.5	0.3	0.073	13.1	0.3	1.8	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227826627|ref|YP_002828406.1|	-	0.055	13.6	2.1	9.8	6.4	0.0	2.6	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-DBF	PF07535.12	gi|227826627|ref|YP_002828406.1|	-	0.18	11.9	2.3	0.68	10.1	1.2	2.1	2	0	0	2	2	2	0	DBF	zinc	finger
DUF2225	PF09986.9	gi|227826627|ref|YP_002828406.1|	-	2.4	7.9	4.9	38	3.9	4.9	2.1	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
zf-H2C2_2	PF13465.6	gi|227826627|ref|YP_002828406.1|	-	2.7	8.6	6.7	18	5.9	0.0	2.8	3	0	0	3	3	3	0	Zinc-finger	double	domain
zf-C2H2_4	PF13894.6	gi|227826627|ref|YP_002828406.1|	-	5.3	8.2	6.1	24	6.1	0.1	2.6	3	0	0	3	3	3	0	C2H2-type	zinc	finger
GTP_EFTU	PF00009.27	gi|227826628|ref|YP_002828407.1|	-	5.1e-21	75.1	0.0	9.5e-21	74.2	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|227826628|ref|YP_002828407.1|	-	7.4e-10	39.1	1.5	2.6e-08	34.1	1.2	2.9	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.17	gi|227826628|ref|YP_002828407.1|	-	5.2e-06	26.7	0.4	3.9e-05	23.9	0.3	2.4	2	1	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
MMR_HSR1	PF01926.23	gi|227826628|ref|YP_002828407.1|	-	0.00044	20.3	0.4	0.0014	18.7	0.1	2.1	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.9	gi|227826628|ref|YP_002828407.1|	-	0.01	15.6	0.2	22	4.8	0.0	3.4	2	1	1	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
AlbA_2	PF04326.14	gi|227826628|ref|YP_002828407.1|	-	0.16	12.3	0.1	0.16	12.3	0.1	3.3	5	0	0	5	5	5	0	Putative	DNA-binding	domain
COXG	PF06240.13	gi|227826629|ref|YP_002828408.1|	-	4.4e-18	65.4	0.2	5e-18	65.2	0.2	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DUF3211	PF11485.8	gi|227826629|ref|YP_002828408.1|	-	0.013	15.7	0.2	0.018	15.3	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3211)
DUF3750	PF12570.8	gi|227826629|ref|YP_002828408.1|	-	0.028	15.1	0.0	0.039	14.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3750)
COXG	PF06240.13	gi|227826630|ref|YP_002828409.1|	-	3.7e-45	153.1	0.7	4.1e-45	153.0	0.7	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DUF3211	PF11485.8	gi|227826630|ref|YP_002828409.1|	-	0.0049	17.1	0.2	0.0067	16.6	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
Polyketide_cyc2	PF10604.9	gi|227826630|ref|YP_002828409.1|	-	0.038	14.3	0.0	0.044	14.0	0.0	1.1	1	0	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
NTP_transf_3	PF12804.7	gi|227826631|ref|YP_002828410.1|	-	2.9e-33	115.5	0.0	3.4e-33	115.3	0.0	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|227826631|ref|YP_002828410.1|	-	2.9e-08	33.7	0.0	4.3e-08	33.2	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CofC	PF01983.16	gi|227826631|ref|YP_002828410.1|	-	0.014	14.6	0.3	0.021	14.0	0.3	1.4	1	1	0	1	1	1	0	Guanylyl	transferase	CofC	like
Fer2_2	PF01799.20	gi|227826632|ref|YP_002828411.1|	-	1e-35	121.6	1.0	4.1e-35	119.6	0.0	2.0	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|227826632|ref|YP_002828411.1|	-	3.8e-07	30.0	0.7	3.8e-07	30.0	0.7	2.1	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|227826632|ref|YP_002828411.1|	-	0.00013	22.0	0.8	0.00031	20.7	0.8	1.7	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DUF5634_N	PF18672.1	gi|227826632|ref|YP_002828411.1|	-	0.047	13.4	0.2	2.2	8.1	0.0	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5634)
Fer2_4	PF13510.6	gi|227826632|ref|YP_002828411.1|	-	0.08	13.0	0.4	2.9	8.0	0.2	2.3	2	0	0	2	2	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
FAD_binding_5	PF00941.21	gi|227826633|ref|YP_002828412.1|	-	5.7e-50	169.4	0.0	7.8e-50	168.9	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|227826633|ref|YP_002828412.1|	-	1.6e-26	92.4	1.1	2.6e-26	91.8	1.1	1.3	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
FAD_binding_4	PF01565.23	gi|227826633|ref|YP_002828412.1|	-	0.014	15.1	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	FAD	binding	domain
YHS	PF04945.13	gi|227826634|ref|YP_002828413.1|	-	2.1e-10	40.5	5.2	2.4e-10	40.4	5.2	1.0	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|227826634|ref|YP_002828413.1|	-	4.1e-09	36.6	3.6	4.6e-09	36.5	3.6	1.1	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.14	gi|227826634|ref|YP_002828413.1|	-	8.8e-08	32.0	2.5	1e-07	31.8	2.5	1.1	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
VATC	PF18716.1	gi|227826634|ref|YP_002828413.1|	-	0.00059	19.6	4.0	0.0011	18.8	4.0	1.4	1	1	0	1	1	1	1	Vms1-associating	treble	clef	domain
Ta0938	PF11494.8	gi|227826634|ref|YP_002828413.1|	-	0.04	14.2	0.3	0.04	14.2	0.3	1.1	1	0	0	1	1	1	0	Ta0938
FAP206	PF12018.8	gi|227826634|ref|YP_002828413.1|	-	0.041	13.4	0.3	0.043	13.3	0.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function
DUF2116	PF09889.9	gi|227826634|ref|YP_002828413.1|	-	0.064	13.3	3.2	0.53	10.3	3.2	1.9	1	1	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-FLZ	PF04570.14	gi|227826634|ref|YP_002828413.1|	-	0.08	12.4	3.5	0.086	12.3	3.5	1.1	1	0	0	1	1	1	0	zinc-finger	of	the	FCS-type,	C2-C2
Phage_hub_GP28	PF11110.8	gi|227826634|ref|YP_002828413.1|	-	0.081	12.8	0.1	0.081	12.8	0.1	1.1	1	0	0	1	1	1	0	Baseplate	hub	distal	subunit
Peptidase_C92	PF05708.12	gi|227826634|ref|YP_002828413.1|	-	0.26	11.4	1.3	0.25	11.4	1.3	1.0	1	0	0	1	1	1	0	Permuted	papain-like	amidase	enzyme,	YaeF/YiiX,	C92	family
C1_2	PF03107.16	gi|227826634|ref|YP_002828413.1|	-	0.47	10.8	5.9	3.1	8.2	5.9	1.9	1	1	0	1	1	1	0	C1	domain
TP_methylase	PF00590.20	gi|227826635|ref|YP_002828414.1|	-	6e-49	166.9	0.1	6.9e-49	166.7	0.1	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF1404	PF07185.11	gi|227826636|ref|YP_002828415.1|	-	6.5e-07	29.2	9.9	6.5e-07	29.2	9.9	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1404)
SIS	PF01380.22	gi|227826638|ref|YP_002828417.1|	-	3.3e-11	43.1	0.1	2.3e-06	27.5	0.1	2.9	2	1	0	2	2	2	2	SIS	domain
Amidohydro_1	PF01979.20	gi|227826639|ref|YP_002828418.1|	-	1.5e-08	34.3	0.0	0.00044	19.7	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|227826639|ref|YP_002828418.1|	-	6.9e-06	25.8	0.0	0.00013	21.6	0.0	2.1	2	0	0	2	2	2	1	Amidohydrolase	family
Met_10	PF02475.16	gi|227826640|ref|YP_002828419.1|	-	3.1e-45	154.4	0.0	3.9e-45	154.1	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
PrmA	PF06325.13	gi|227826640|ref|YP_002828419.1|	-	0.013	14.9	0.0	0.019	14.4	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Gln-synt_C	PF00120.24	gi|227826641|ref|YP_002828420.1|	-	2.4e-76	257.0	0.0	7.3e-76	255.4	0.0	1.7	1	1	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|227826641|ref|YP_002828420.1|	-	0.00043	20.0	0.0	0.85	9.4	0.0	2.5	2	0	0	2	2	2	2	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|227826641|ref|YP_002828420.1|	-	0.0072	16.1	0.0	0.021	14.7	0.0	1.8	1	0	0	1	1	1	1	Glutamine	synthetase	N-terminal	domain
ADH_N	PF08240.12	gi|227826642|ref|YP_002828421.1|	-	9.9e-30	102.6	1.4	2e-29	101.6	1.4	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227826642|ref|YP_002828421.1|	-	1.3e-19	70.4	0.0	2.8e-19	69.4	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227826642|ref|YP_002828421.1|	-	1.1e-12	49.1	0.0	1.9e-12	48.4	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|227826642|ref|YP_002828421.1|	-	0.00087	18.6	0.2	0.0013	18.0	0.2	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.6	gi|227826642|ref|YP_002828421.1|	-	0.0032	17.9	0.0	0.0056	17.1	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Glu_dehyd_C	PF16912.5	gi|227826642|ref|YP_002828421.1|	-	0.015	14.8	0.1	0.025	14.1	0.1	1.3	1	0	0	1	1	1	0	Glucose	dehydrogenase	C-terminus
Shikimate_DH	PF01488.20	gi|227826642|ref|YP_002828421.1|	-	0.024	14.7	0.1	0.043	13.9	0.1	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Cas_DxTHG	PF09455.10	gi|227826642|ref|YP_002828421.1|	-	0.095	12.3	0.1	0.25	10.9	0.0	1.6	2	0	0	2	2	2	0	CRISPR-associated	(Cas)	DxTHG	family
Ribosomal_L13e	PF01294.18	gi|227826643|ref|YP_002828422.1|	-	5.9e-12	45.8	0.2	6.6e-12	45.6	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L13e
RTC	PF01137.21	gi|227826644|ref|YP_002828423.1|	-	8.5e-74	247.5	0.0	2e-73	246.3	0.0	1.5	1	1	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|227826644|ref|YP_002828423.1|	-	1.5e-21	76.9	0.3	2.5e-21	76.1	0.3	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
IMS	PF00817.20	gi|227826646|ref|YP_002828425.1|	-	3.5e-45	153.7	0.8	7.7e-45	152.6	0.3	1.8	2	0	0	2	2	2	1	impB/mucB/samB	family
IMS_HHH	PF11798.8	gi|227826646|ref|YP_002828425.1|	-	2.5e-07	30.6	0.3	8.2e-07	29.0	0.3	2.0	1	0	0	1	1	1	1	IMS	family	HHH	motif
IMS_C	PF11799.8	gi|227826646|ref|YP_002828425.1|	-	9.2e-06	26.4	0.1	2.3e-05	25.1	0.1	1.7	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
Cdd1	PF11731.8	gi|227826646|ref|YP_002828425.1|	-	0.036	14.3	0.0	0.12	12.6	0.0	1.9	1	1	0	1	1	1	0	Pathogenicity	locus
HHH_5	PF14520.6	gi|227826646|ref|YP_002828425.1|	-	0.064	13.9	1.5	0.47	11.1	0.7	2.8	2	1	1	3	3	2	0	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|227826646|ref|YP_002828425.1|	-	0.09	12.7	0.1	0.55	10.2	0.1	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
BAF	PF02961.14	gi|227826646|ref|YP_002828425.1|	-	0.11	12.9	0.0	0.29	11.6	0.0	1.7	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
PfkB	PF00294.24	gi|227826647|ref|YP_002828426.1|	-	1.1e-31	110.2	0.1	1.3e-29	103.4	0.1	2.2	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
TIP49	PF06068.13	gi|227826648|ref|YP_002828427.1|	-	9.5e-136	452.6	1.3	9.5e-136	452.6	1.3	1.3	2	0	0	2	2	2	1	TIP49	P-loop	domain
TIP49_C	PF17856.1	gi|227826648|ref|YP_002828427.1|	-	7.5e-22	77.2	1.7	6.9e-21	74.2	0.7	2.8	3	0	0	3	3	3	1	TIP49	AAA-lid	domain
AAA	PF00004.29	gi|227826648|ref|YP_002828427.1|	-	3.5e-11	43.7	0.4	3.2e-08	34.1	0.0	2.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|227826648|ref|YP_002828427.1|	-	3.6e-09	36.6	0.3	2.3e-07	30.7	0.1	2.5	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|227826648|ref|YP_002828427.1|	-	1.6e-07	31.7	0.5	0.022	15.0	0.1	2.5	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|227826648|ref|YP_002828427.1|	-	9.2e-06	26.1	2.4	0.00014	22.3	2.4	2.4	1	1	0	1	1	1	1	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|227826648|ref|YP_002828427.1|	-	5.8e-05	22.6	0.5	0.00047	19.6	0.1	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|227826648|ref|YP_002828427.1|	-	0.00011	22.0	0.2	0.0056	16.4	0.0	2.4	2	0	0	2	2	2	1	Sigma-54	interaction	domain
DnaB_C	PF03796.15	gi|227826648|ref|YP_002828427.1|	-	0.00037	19.9	0.2	0.00094	18.6	0.1	1.7	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
ABC_tran	PF00005.27	gi|227826648|ref|YP_002828427.1|	-	0.00051	20.6	0.2	0.001	19.6	0.2	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_7	PF12775.7	gi|227826648|ref|YP_002828427.1|	-	0.00054	19.5	0.1	0.0015	18.1	0.0	1.6	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|227826648|ref|YP_002828427.1|	-	0.00085	19.9	0.0	0.013	16.0	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|227826648|ref|YP_002828427.1|	-	0.00095	18.9	0.1	0.0023	17.7	0.1	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|227826648|ref|YP_002828427.1|	-	0.001	19.1	0.1	0.0052	16.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_2	PF07724.14	gi|227826648|ref|YP_002828427.1|	-	0.0011	19.1	0.1	0.0057	16.8	0.0	2.2	2	1	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_25	PF13481.6	gi|227826648|ref|YP_002828427.1|	-	0.0018	17.8	0.3	0.0054	16.3	0.1	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|227826648|ref|YP_002828427.1|	-	0.0021	18.2	0.0	0.0047	17.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
PhoH	PF02562.16	gi|227826648|ref|YP_002828427.1|	-	0.014	14.9	0.2	0.03	13.8	0.2	1.5	1	0	0	1	1	1	0	PhoH-like	protein
RNA_helicase	PF00910.22	gi|227826648|ref|YP_002828427.1|	-	0.014	15.8	0.0	0.026	14.9	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_17	PF13207.6	gi|227826648|ref|YP_002828427.1|	-	0.015	15.7	1.4	0.058	13.8	0.0	2.6	3	1	0	3	3	3	0	AAA	domain
ResIII	PF04851.15	gi|227826648|ref|YP_002828427.1|	-	0.02	14.9	0.1	0.46	10.5	0.0	2.4	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_28	PF13521.6	gi|227826648|ref|YP_002828427.1|	-	0.023	14.9	0.2	0.067	13.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|227826648|ref|YP_002828427.1|	-	0.035	14.0	0.0	0.083	12.8	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
Parvo_NS1	PF01057.17	gi|227826648|ref|YP_002828427.1|	-	0.043	12.9	0.0	0.074	12.1	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
TsaE	PF02367.17	gi|227826648|ref|YP_002828427.1|	-	0.063	13.3	0.3	0.23	11.4	0.1	2.0	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_19	PF13245.6	gi|227826648|ref|YP_002828427.1|	-	0.073	13.4	0.4	0.56	10.5	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|227826648|ref|YP_002828427.1|	-	0.078	12.8	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|227826648|ref|YP_002828427.1|	-	0.13	11.5	0.0	0.16	11.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
GATase	PF00117.28	gi|227826649|ref|YP_002828428.1|	-	6.1e-36	124.0	0.0	8.1e-36	123.6	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|227826649|ref|YP_002828428.1|	-	5e-12	46.0	0.3	7.1e-11	42.3	0.3	2.5	1	1	1	2	2	2	1	Peptidase	C26
SNO	PF01174.19	gi|227826649|ref|YP_002828428.1|	-	0.0025	17.7	0.0	0.071	13.0	0.0	2.1	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
HTS	PF04204.16	gi|227826649|ref|YP_002828428.1|	-	0.017	14.1	0.0	0.025	13.5	0.0	1.3	1	1	0	1	1	1	0	Homoserine	O-succinyltransferase
PI3K_C2	PF00792.24	gi|227826649|ref|YP_002828428.1|	-	0.091	12.7	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Phosphoinositide	3-kinase	C2
ATPase	PF06745.13	gi|227826650|ref|YP_002828429.1|	-	8.9e-59	198.6	0.2	1e-58	198.4	0.2	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|227826650|ref|YP_002828429.1|	-	4.3e-07	29.7	0.0	7.5e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|227826650|ref|YP_002828429.1|	-	2.3e-06	27.1	0.0	3.9e-06	26.3	0.0	1.4	1	1	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|227826650|ref|YP_002828429.1|	-	2.8e-06	27.0	0.1	5.2e-06	26.1	0.0	1.5	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
MEDS	PF14417.6	gi|227826650|ref|YP_002828429.1|	-	1.1e-05	25.3	0.0	1.7e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
GvpD	PF07088.11	gi|227826650|ref|YP_002828429.1|	-	2.3e-05	23.2	0.2	0.00012	20.9	0.1	2.2	1	1	1	2	2	2	1	GvpD	gas	vesicle	protein
AAA_14	PF13173.6	gi|227826650|ref|YP_002828429.1|	-	2.9e-05	24.1	0.1	0.0023	17.9	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|227826650|ref|YP_002828429.1|	-	6e-05	22.8	0.0	0.00028	20.7	0.0	1.9	1	1	1	2	2	2	1	IstB-like	ATP	binding	protein
DnaB_C	PF03796.15	gi|227826650|ref|YP_002828429.1|	-	0.00017	21.0	0.0	0.00074	18.9	0.0	2.0	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|227826650|ref|YP_002828429.1|	-	0.005	16.6	0.9	0.0098	15.6	0.1	1.9	2	2	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|227826650|ref|YP_002828429.1|	-	0.0065	16.8	0.0	0.012	15.9	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|227826650|ref|YP_002828429.1|	-	0.012	16.0	0.0	0.023	15.1	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
NACHT	PF05729.12	gi|227826650|ref|YP_002828429.1|	-	0.058	13.3	0.0	0.17	11.8	0.0	1.8	1	1	0	1	1	1	0	NACHT	domain
AAA	PF00004.29	gi|227826650|ref|YP_002828429.1|	-	0.13	12.7	0.1	0.3	11.5	0.1	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PAXNEB	PF05625.11	gi|227826650|ref|YP_002828429.1|	-	0.14	11.2	0.0	0.39	9.8	0.0	1.6	2	0	0	2	2	2	0	PAXNEB	protein
AAA_19	PF13245.6	gi|227826650|ref|YP_002828429.1|	-	0.2	12.0	0.7	1.1	9.6	0.7	2.2	1	1	0	1	1	1	0	AAA	domain
Y_phosphatase	PF00102.27	gi|227826651|ref|YP_002828430.1|	-	5.8e-10	39.1	0.0	7e-10	38.9	0.0	1.1	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
DSPc	PF00782.20	gi|227826651|ref|YP_002828430.1|	-	9.2e-09	35.2	0.0	1.4e-08	34.7	0.0	1.3	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
CDKN3	PF05706.12	gi|227826651|ref|YP_002828430.1|	-	5e-06	26.3	0.0	5.9e-06	26.1	0.0	1.1	1	0	0	1	1	1	1	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
PTPlike_phytase	PF14566.6	gi|227826651|ref|YP_002828430.1|	-	0.0036	17.4	0.0	0.0043	17.2	0.0	1.2	1	0	0	1	1	1	1	Inositol	hexakisphosphate
Y_phosphatase3	PF13350.6	gi|227826651|ref|YP_002828430.1|	-	0.0066	16.4	0.0	0.0078	16.2	0.0	1.2	1	0	0	1	1	1	1	Tyrosine	phosphatase	family
Endonuclease_5	PF04493.14	gi|227826652|ref|YP_002828431.1|	-	7.6e-35	120.4	0.0	1.1e-34	119.8	0.0	1.2	1	0	0	1	1	1	1	Endonuclease	V
PRR20	PF15708.5	gi|227826652|ref|YP_002828431.1|	-	0.26	11.2	0.0	0.32	10.9	0.0	1.1	1	0	0	1	1	1	0	Proline-rich	protein	family	20
Isochorismatase	PF00857.20	gi|227826653|ref|YP_002828432.1|	-	6e-39	134.0	0.0	6.9e-39	133.8	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
DHHA1	PF02272.19	gi|227826654|ref|YP_002828433.1|	-	2.1e-09	37.9	0.1	7.1e-09	36.2	0.0	1.9	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|227826654|ref|YP_002828433.1|	-	0.00019	21.6	0.0	0.00035	20.7	0.0	1.3	1	0	0	1	1	1	1	DHH	family
Metallophos	PF00149.28	gi|227826655|ref|YP_002828434.1|	-	1e-10	42.5	0.0	1.2e-10	42.2	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|227826655|ref|YP_002828434.1|	-	1.9e-08	34.7	0.0	6.8e-08	32.9	0.0	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
YabP	PF07873.11	gi|227826655|ref|YP_002828434.1|	-	0.0086	15.8	0.5	0.022	14.5	0.5	1.7	1	0	0	1	1	1	1	YabP	family
DUF763	PF05559.11	gi|227826656|ref|YP_002828435.1|	-	2.9e-121	404.5	0.0	3.5e-121	404.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
PhoU_div	PF01865.16	gi|227826657|ref|YP_002828436.1|	-	5.1e-14	52.1	10.5	6.2e-14	51.8	10.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
CdvA	PF18822.1	gi|227826657|ref|YP_002828436.1|	-	0.05	13.4	1.4	0.05	13.4	1.4	2.8	3	2	1	4	4	4	0	CdvA-like	coiled-coil	domain
RTC	PF01137.21	gi|227826657|ref|YP_002828436.1|	-	0.17	11.1	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	RNA	3'-terminal	phosphate	cyclase
PHO4	PF01384.20	gi|227826658|ref|YP_002828437.1|	-	6.9e-27	94.4	36.6	1.9e-14	53.5	23.3	2.8	1	1	1	2	2	2	2	Phosphate	transporter	family
RHH_1	PF01402.21	gi|227826659|ref|YP_002828438.1|	-	1.7e-07	30.9	0.0	2.4e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|227826659|ref|YP_002828438.1|	-	0.03	14.5	0.4	0.16	12.1	0.2	1.9	1	1	1	2	2	2	0	Ribbon-Helix-Helix	transcriptional	regulator	family
DEAD	PF00270.29	gi|227826660|ref|YP_002828439.1|	-	1.5e-23	83.5	0.0	3.9e-22	78.9	0.0	2.7	3	1	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|227826660|ref|YP_002828439.1|	-	1e-13	51.6	0.0	1.2e-12	48.1	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|227826660|ref|YP_002828439.1|	-	1.7e-13	50.9	0.1	1e-11	45.1	0.1	3.2	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|227826660|ref|YP_002828439.1|	-	0.00011	21.1	0.0	0.00042	19.1	0.0	1.8	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
DNA_pol_lambd_f	PF10391.9	gi|227826660|ref|YP_002828439.1|	-	0.00028	20.7	0.2	0.0024	17.7	0.0	2.5	3	0	0	3	3	3	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_5	PF14520.6	gi|227826660|ref|YP_002828439.1|	-	0.0018	18.8	0.3	0.007	16.9	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
ATPase	PF06745.13	gi|227826660|ref|YP_002828439.1|	-	0.023	14.1	0.0	0.05	13.0	0.0	1.5	1	0	0	1	1	1	0	KaiC
Carboxyl_trans	PF01039.22	gi|227826661|ref|YP_002828440.1|	-	3.2e-179	596.7	1.0	3.6e-179	596.5	1.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|227826661|ref|YP_002828440.1|	-	0.0054	16.2	2.0	0.0076	15.8	0.0	2.1	2	1	1	3	3	3	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
Biotin_lipoyl	PF00364.22	gi|227826662|ref|YP_002828441.1|	-	3.8e-19	68.3	2.1	2.7e-18	65.6	3.6	1.6	2	0	0	2	2	2	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|227826662|ref|YP_002828441.1|	-	1.2e-16	60.2	5.6	1.2e-07	31.5	2.4	2.5	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD_D23	PF16576.5	gi|227826662|ref|YP_002828441.1|	-	2.1e-07	30.4	0.1	0.0028	16.9	0.0	2.1	1	1	1	2	2	2	2	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
HlyD_3	PF13437.6	gi|227826662|ref|YP_002828441.1|	-	6.4e-07	30.0	1.2	0.013	16.2	0.0	2.6	3	0	0	3	3	3	2	HlyD	family	secretion	protein
NQRA	PF05896.11	gi|227826662|ref|YP_002828441.1|	-	0.00028	20.4	1.6	0.0007	19.1	1.6	1.7	1	1	0	1	1	1	1	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
GCV_H	PF01597.19	gi|227826662|ref|YP_002828441.1|	-	0.0004	20.3	0.6	0.00095	19.0	0.4	1.8	2	0	0	2	2	2	1	Glycine	cleavage	H-protein
RnfC_N	PF13375.6	gi|227826662|ref|YP_002828441.1|	-	0.0011	18.9	1.2	0.0032	17.4	1.2	1.8	1	1	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
PTS_EIIA_1	PF00358.20	gi|227826662|ref|YP_002828441.1|	-	0.0015	18.3	0.4	0.25	11.1	0.0	2.8	1	1	2	3	3	3	1	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
QRPTase_N	PF02749.16	gi|227826662|ref|YP_002828441.1|	-	0.0018	18.3	0.2	0.56	10.3	0.0	2.5	1	1	1	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Peptidase_M23	PF01551.22	gi|227826662|ref|YP_002828441.1|	-	0.0025	18.0	0.4	0.61	10.3	0.0	2.4	1	1	1	2	2	2	1	Peptidase	family	M23
PYNP_C	PF07831.13	gi|227826662|ref|YP_002828441.1|	-	0.011	15.3	1.8	0.4	10.4	0.0	2.4	2	0	0	2	2	2	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
YqfD	PF06898.11	gi|227826662|ref|YP_002828441.1|	-	0.057	12.3	7.5	0.85	8.4	0.3	2.8	2	1	1	3	3	3	0	Putative	stage	IV	sporulation	protein	YqfD
DUF4884	PF16225.5	gi|227826662|ref|YP_002828441.1|	-	0.095	12.8	0.6	0.69	10.0	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4884)
CPSase_L_D2	PF02786.17	gi|227826663|ref|YP_002828442.1|	-	1.6e-66	223.9	0.0	2.2e-66	223.4	0.0	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|227826663|ref|YP_002828442.1|	-	5.3e-45	152.5	0.1	9.9e-45	151.6	0.1	1.5	1	0	0	1	1	1	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|227826663|ref|YP_002828442.1|	-	1.4e-35	121.6	0.0	2.5e-35	120.8	0.0	1.4	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|227826663|ref|YP_002828442.1|	-	2.5e-07	30.5	2.0	3.7e-07	29.9	0.1	2.2	3	1	0	3	3	3	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|227826663|ref|YP_002828442.1|	-	0.00015	21.8	0.1	0.00024	21.2	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|227826663|ref|YP_002828442.1|	-	0.0011	18.6	0.2	0.0026	17.4	0.0	1.7	2	0	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|227826663|ref|YP_002828442.1|	-	0.12	12.1	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_5	PF13549.6	gi|227826663|ref|YP_002828442.1|	-	0.13	11.7	0.0	0.25	10.8	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
BPD_transp_1	PF00528.22	gi|227826664|ref|YP_002828443.1|	-	5.5e-17	62.1	45.0	1.5e-11	44.4	13.5	3.3	2	1	1	3	3	3	3	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|227826665|ref|YP_002828444.1|	-	6.6e-27	94.7	0.0	9.6e-27	94.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227826665|ref|YP_002828444.1|	-	4.9e-06	26.6	3.5	0.027	14.3	0.3	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|227826665|ref|YP_002828444.1|	-	0.00018	21.9	0.0	0.00031	21.2	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|227826665|ref|YP_002828444.1|	-	0.00089	18.7	0.0	0.17	11.3	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|227826665|ref|YP_002828444.1|	-	0.0012	19.1	0.2	0.0048	17.2	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|227826665|ref|YP_002828444.1|	-	0.0014	18.6	0.0	0.0024	17.8	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA	PF00004.29	gi|227826665|ref|YP_002828444.1|	-	0.0093	16.4	0.1	0.052	14.0	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|227826665|ref|YP_002828444.1|	-	0.017	14.8	0.0	0.046	13.5	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|227826665|ref|YP_002828444.1|	-	0.028	14.5	0.2	0.053	13.6	0.2	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ABC_ATPase	PF09818.9	gi|227826665|ref|YP_002828444.1|	-	0.032	13.1	0.2	5.1	5.8	0.0	2.5	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
IstB_IS21	PF01695.17	gi|227826665|ref|YP_002828444.1|	-	0.048	13.4	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|227826665|ref|YP_002828444.1|	-	0.053	13.7	0.0	0.082	13.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|227826665|ref|YP_002828444.1|	-	0.057	13.3	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|227826665|ref|YP_002828444.1|	-	0.058	13.9	0.1	0.095	13.2	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|227826665|ref|YP_002828444.1|	-	0.077	12.7	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|227826665|ref|YP_002828444.1|	-	0.088	12.7	0.1	0.21	11.5	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_30	PF13604.6	gi|227826665|ref|YP_002828444.1|	-	0.098	12.4	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|227826665|ref|YP_002828444.1|	-	0.13	11.4	0.1	0.24	10.5	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Adeno_IVa2	PF02456.15	gi|227826665|ref|YP_002828444.1|	-	0.15	10.8	0.1	3.5	6.3	0.1	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
AAA_15	PF13175.6	gi|227826665|ref|YP_002828444.1|	-	0.2	11.4	0.0	0.25	11.0	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
DUF4051	PF13260.6	gi|227826666|ref|YP_002828445.1|	-	0.12	12.1	0.5	0.12	12.1	0.5	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4051)
ABC_tran_2	PF16949.5	gi|227826666|ref|YP_002828445.1|	-	0.15	10.8	5.4	0.16	10.7	5.4	1.0	1	0	0	1	1	1	0	Putative	ATP-binding	cassette
Aconitase_C	PF00694.19	gi|227826667|ref|YP_002828446.1|	-	3.1e-22	79.3	0.1	5.2e-22	78.6	0.1	1.4	1	1	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.13	gi|227826667|ref|YP_002828446.1|	-	0.18	11.4	1.5	2.9	7.5	1.5	2.1	1	1	0	1	1	1	0	Aconitate	hydratase	2	N-terminus
PepSY	PF03413.19	gi|227826667|ref|YP_002828446.1|	-	0.19	12.3	0.9	1.8	9.2	0.0	2.2	2	0	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
Aconitase	PF00330.20	gi|227826668|ref|YP_002828447.1|	-	5.6e-73	246.5	2.0	1.4e-70	238.6	2.0	2.5	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|227826668|ref|YP_002828447.1|	-	0.0029	16.4	0.0	0.0043	15.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
Phage_holin_2_4	PF16082.5	gi|227826668|ref|YP_002828447.1|	-	0.29	10.9	3.5	3.3	7.5	3.0	2.2	2	0	0	2	2	2	0	Bacteriophage	holin	family,	superfamily	II-like
FAD_binding_7	PF03441.14	gi|227826669|ref|YP_002828448.1|	-	1.8e-62	210.4	1.9	3e-62	209.7	1.9	1.4	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|227826669|ref|YP_002828448.1|	-	4.2e-32	111.4	0.1	2e-31	109.2	0.0	1.9	2	0	0	2	2	2	1	DNA	photolyase
Glyco_hydro_15	PF00723.21	gi|227826670|ref|YP_002828449.1|	-	4.5e-28	98.2	0.0	3.8e-18	65.5	0.1	3.1	2	1	1	3	3	3	3	Glycosyl	hydrolases	family	15
Glucodextran_N	PF09137.11	gi|227826670|ref|YP_002828449.1|	-	5.3e-05	22.9	0.0	8e-05	22.3	0.0	1.2	1	0	0	1	1	1	1	Glucodextranase,	domain	N
Glyco_hydro_36	PF17167.4	gi|227826670|ref|YP_002828449.1|	-	0.00047	19.0	0.0	0.00076	18.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
DUF608	PF04685.13	gi|227826670|ref|YP_002828449.1|	-	0.012	14.8	0.1	0.022	14.0	0.1	1.4	1	0	0	1	1	1	0	Glycosyl-hydrolase	family	116,	catalytic	region
TrmB	PF01978.19	gi|227826671|ref|YP_002828450.1|	-	5.8e-10	38.9	0.5	1e-09	38.1	0.5	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|227826671|ref|YP_002828450.1|	-	6.6e-08	32.0	3.3	1e-07	31.4	3.3	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|227826671|ref|YP_002828450.1|	-	2.8e-07	30.4	2.5	2.8e-07	30.4	2.5	1.8	2	1	1	3	3	3	1	HTH	domain
MarR	PF01047.22	gi|227826671|ref|YP_002828450.1|	-	1.1e-05	25.2	1.4	1.5e-05	24.8	0.8	1.5	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|227826671|ref|YP_002828450.1|	-	6.2e-05	22.9	0.0	0.00022	21.1	0.0	1.8	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|227826671|ref|YP_002828450.1|	-	9.6e-05	22.2	6.1	0.00013	21.8	6.1	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_Mga	PF08280.11	gi|227826671|ref|YP_002828450.1|	-	0.00019	21.4	4.3	0.00038	20.4	4.3	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
RuvB_C	PF05491.13	gi|227826671|ref|YP_002828450.1|	-	0.00022	21.1	2.6	0.00045	20.0	2.3	1.8	1	1	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
HTH_5	PF01022.20	gi|227826671|ref|YP_002828450.1|	-	0.00027	20.7	1.9	0.0004	20.2	0.9	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|227826671|ref|YP_002828450.1|	-	0.0014	18.5	0.0	0.0019	18.0	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|227826671|ref|YP_002828450.1|	-	0.0022	18.3	0.4	0.0048	17.2	0.4	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
GerE	PF00196.19	gi|227826671|ref|YP_002828450.1|	-	0.0034	16.9	0.5	0.0083	15.6	0.5	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.16	gi|227826671|ref|YP_002828450.1|	-	0.0052	16.3	0.0	0.0096	15.4	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
GntR	PF00392.21	gi|227826671|ref|YP_002828450.1|	-	0.011	15.4	0.0	0.019	14.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_34	PF13601.6	gi|227826671|ref|YP_002828450.1|	-	0.018	15.2	1.0	0.033	14.4	1.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|227826671|ref|YP_002828450.1|	-	0.024	14.8	0.3	0.057	13.6	0.3	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|227826671|ref|YP_002828450.1|	-	0.029	14.1	1.6	0.087	12.6	0.3	2.0	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Phage_rep_O	PF04492.13	gi|227826671|ref|YP_002828450.1|	-	0.039	14.5	2.3	0.12	13.0	1.9	1.8	1	1	1	2	2	2	0	Bacteriophage	replication	protein	O
TFIIE_beta	PF02186.15	gi|227826671|ref|YP_002828450.1|	-	0.04	14.2	1.2	0.04	14.2	1.2	1.6	2	0	0	2	2	1	0	TFIIE	beta	subunit	core	domain
SMC_ScpB	PF04079.16	gi|227826671|ref|YP_002828450.1|	-	0.046	13.3	1.0	0.11	12.1	0.9	1.7	1	1	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_IclR	PF09339.10	gi|227826671|ref|YP_002828450.1|	-	0.056	13.2	0.0	0.093	12.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_36	PF13730.6	gi|227826671|ref|YP_002828450.1|	-	0.059	13.3	0.3	0.19	11.7	0.3	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|227826671|ref|YP_002828450.1|	-	0.095	13.2	0.1	0.15	12.6	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_19	PF12844.7	gi|227826671|ref|YP_002828450.1|	-	0.14	12.2	3.6	0.2	11.7	2.5	1.9	1	1	1	2	2	2	0	Helix-turn-helix	domain
DprA_WH	PF17782.1	gi|227826671|ref|YP_002828450.1|	-	0.18	11.9	0.0	2	8.6	0.0	2.0	2	0	0	2	2	2	0	DprA	winged	helix	domain
HTH_9	PF08221.11	gi|227826671|ref|YP_002828450.1|	-	0.19	11.8	0.8	0.34	11.0	0.8	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_45	PF14947.6	gi|227826672|ref|YP_002828451.1|	-	1.2e-29	102.0	2.3	1.5e-29	101.8	2.3	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF3116	PF11313.8	gi|227826672|ref|YP_002828451.1|	-	0.035	14.0	0.1	0.093	12.6	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3116)
CbiA	PF01656.23	gi|227826673|ref|YP_002828452.1|	-	3.6e-09	36.8	0.0	5.7e-09	36.1	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|227826673|ref|YP_002828452.1|	-	2.1e-06	27.4	2.8	0.00011	21.7	0.1	2.4	2	1	1	3	3	3	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|227826673|ref|YP_002828452.1|	-	1.3e-05	25.2	4.4	0.00019	21.4	3.2	2.7	1	1	1	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|227826673|ref|YP_002828452.1|	-	0.062	12.6	0.0	0.088	12.1	0.0	1.3	1	1	0	1	1	1	0	ATPase	MipZ
DUF3311	PF11755.8	gi|227826674|ref|YP_002828453.1|	-	1.8e-13	50.2	4.1	2e-13	50.0	4.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
SSF	PF00474.17	gi|227826675|ref|YP_002828454.1|	-	1.8e-13	50.1	35.1	1.8e-13	50.1	35.1	1.9	2	0	0	2	2	2	1	Sodium:solute	symporter	family
RIC3	PF15361.6	gi|227826675|ref|YP_002828454.1|	-	0.26	11.7	0.1	0.64	10.4	0.1	1.6	1	0	0	1	1	1	0	Resistance	to	inhibitors	of	cholinesterase	homologue	3
SIR2	PF02146.17	gi|227826676|ref|YP_002828455.1|	-	7.3e-51	172.6	0.0	8.8e-51	172.3	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
NTP_transferase	PF00483.23	gi|227826678|ref|YP_002828457.1|	-	2.9e-30	105.6	0.0	3.7e-30	105.3	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|227826678|ref|YP_002828457.1|	-	2.9e-09	37.5	0.0	4e-09	37.0	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|227826678|ref|YP_002828457.1|	-	0.00048	19.9	0.0	0.00067	19.5	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4224	PF13986.6	gi|227826678|ref|YP_002828457.1|	-	0.0073	16.2	0.3	0.14	12.0	0.1	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4224)
LIP	PF03583.14	gi|227826678|ref|YP_002828457.1|	-	0.2	11.0	0.0	0.28	10.5	0.0	1.1	1	0	0	1	1	1	0	Secretory	lipase
DNA_binding_1	PF01035.20	gi|227826679|ref|YP_002828458.1|	-	3.9e-27	94.2	0.0	4.8e-27	93.9	0.0	1.1	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|227826679|ref|YP_002828458.1|	-	0.0069	16.0	0.0	0.015	14.9	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
tRNA-synt_2b	PF00587.25	gi|227826680|ref|YP_002828459.1|	-	1.2e-38	132.9	0.0	2.2e-38	132.0	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|227826680|ref|YP_002828459.1|	-	2.9e-19	69.0	1.9	2.9e-19	69.0	1.9	2.0	2	0	0	2	2	2	1	Anticodon	binding	domain
Glyco_tran_28_C	PF04101.16	gi|227826681|ref|YP_002828460.1|	-	3.9e-08	33.5	0.0	8.7e-08	32.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
HhH-GPD	PF00730.25	gi|227826682|ref|YP_002828461.1|	-	1.6e-09	38.1	0.0	2.3e-09	37.6	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|227826682|ref|YP_002828461.1|	-	0.0005	19.8	0.0	0.0015	18.3	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|227826682|ref|YP_002828461.1|	-	0.0038	17.8	0.1	0.067	13.8	0.0	2.9	2	1	1	3	3	3	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|227826682|ref|YP_002828461.1|	-	0.08	13.0	0.0	0.24	11.5	0.0	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.9	gi|227826682|ref|YP_002828461.1|	-	0.24	11.8	3.2	0.37	11.2	3.2	1.3	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
ATP-grasp_2	PF08442.10	gi|227826683|ref|YP_002828462.1|	-	1.7e-29	102.9	0.9	3.4e-28	98.6	0.9	2.6	1	1	0	1	1	1	1	ATP-grasp	domain
Ligase_CoA	PF00549.19	gi|227826683|ref|YP_002828462.1|	-	5.7e-17	61.9	0.2	9e-17	61.3	0.2	1.3	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_5	PF13549.6	gi|227826683|ref|YP_002828462.1|	-	1.3e-05	24.8	0.0	0.02	14.3	0.1	3.1	2	1	0	2	2	2	2	ATP-grasp	domain
PRY	PF13765.6	gi|227826683|ref|YP_002828462.1|	-	0.068	12.8	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	SPRY-associated	domain
CoA_binding	PF02629.19	gi|227826684|ref|YP_002828463.1|	-	2.3e-23	82.7	1.1	2.3e-23	82.7	1.1	2.5	2	1	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|227826684|ref|YP_002828463.1|	-	6.6e-15	55.2	0.2	1.3e-14	54.3	0.2	1.5	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|227826684|ref|YP_002828463.1|	-	3.5e-11	43.1	0.0	6.8e-11	42.1	0.0	1.5	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|227826684|ref|YP_002828463.1|	-	6.2e-09	36.4	0.1	1.6e-08	35.0	0.1	1.7	2	0	0	2	2	2	1	CoA	binding	domain
PDZ_6	PF17820.1	gi|227826684|ref|YP_002828463.1|	-	0.014	15.2	0.0	1.7	8.5	0.0	2.9	3	0	0	3	3	3	0	PDZ	domain
DUF2207	PF09972.9	gi|227826686|ref|YP_002828465.1|	-	0.54	9.0	4.8	0.66	8.7	4.8	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Pex24p	PF06398.11	gi|227826686|ref|YP_002828465.1|	-	1.1	8.2	5.8	1.2	8.0	5.8	1.1	1	0	0	1	1	1	0	Integral	peroxisomal	membrane	peroxin
SoxE	PF06525.11	gi|227826688|ref|YP_002828467.1|	-	1.6e-74	248.3	8.2	1.6e-74	248.3	8.2	1.5	2	0	0	2	2	2	1	Sulfocyanin	(SoxE)	domain
SpoIIIAH	PF12685.7	gi|227826688|ref|YP_002828467.1|	-	0.0032	17.3	0.7	0.0041	17.0	0.7	1.2	1	0	0	1	1	1	1	SpoIIIAH-like	protein
Mucin	PF01456.17	gi|227826688|ref|YP_002828467.1|	-	0.031	14.3	22.8	0.055	13.5	22.8	1.5	1	0	0	1	1	1	0	Mucin-like	glycoprotein
DUF4834	PF16118.5	gi|227826688|ref|YP_002828467.1|	-	0.044	14.7	1.5	0.081	13.9	1.5	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
Shisa	PF13908.6	gi|227826688|ref|YP_002828467.1|	-	0.052	13.8	9.8	0.078	13.2	9.8	1.3	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
DUF4330	PF14221.6	gi|227826688|ref|YP_002828467.1|	-	0.14	12.4	4.7	0.19	11.9	4.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4330)
Macoilin	PF09726.9	gi|227826688|ref|YP_002828467.1|	-	0.48	8.9	1.4	0.52	8.8	1.4	1.1	1	0	0	1	1	1	0	Macoilin	family
Tmemb_9	PF05434.11	gi|227826688|ref|YP_002828467.1|	-	1.2	9.1	2.5	1.7	8.5	2.5	1.3	1	0	0	1	1	1	0	TMEM9
DUF4307	PF14155.6	gi|227826688|ref|YP_002828467.1|	-	3	7.7	7.6	3.7	7.4	2.5	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4307)
HRG	PF16954.5	gi|227826688|ref|YP_002828467.1|	-	5.2	7.5	8.4	0.99	9.9	3.3	2.5	4	0	0	4	4	4	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
Fe-ADH	PF00465.19	gi|227826690|ref|YP_002828469.1|	-	2.4e-47	161.5	0.0	6.5e-47	160.1	0.0	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|227826690|ref|YP_002828469.1|	-	2.4e-09	37.3	0.0	3.3e-09	36.8	0.0	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Herpes_U55	PF06501.11	gi|227826691|ref|YP_002828470.1|	-	0.015	14.1	0.4	0.018	13.8	0.4	1.0	1	0	0	1	1	1	0	Human	herpesvirus	U55	protein
AAA_31	PF13614.6	gi|227826692|ref|YP_002828471.1|	-	3.8e-07	30.2	0.9	1.7e-05	24.8	0.0	2.6	1	1	1	3	3	3	1	AAA	domain
CbiA	PF01656.23	gi|227826692|ref|YP_002828471.1|	-	8e-07	29.2	0.0	1.3e-06	28.4	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|227826692|ref|YP_002828471.1|	-	0.00043	19.8	0.0	0.00066	19.2	0.0	1.3	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|227826692|ref|YP_002828471.1|	-	0.041	13.1	0.1	0.12	11.6	0.0	1.8	2	0	0	2	2	2	0	Anion-transporting	ATPase
PikAIV_N	PF18605.1	gi|227826692|ref|YP_002828471.1|	-	0.22	11.1	0.5	7.1	6.3	0.0	2.3	2	0	0	2	2	2	0	Narbonolide/10-deoxymethynolide	synthase	PikA4	N-terminal	domain
Abhydrolase_3	PF07859.13	gi|227826693|ref|YP_002828472.1|	-	8.8e-69	231.6	0.0	1.2e-68	231.1	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|227826693|ref|YP_002828472.1|	-	7.6e-12	44.9	1.0	2.5e-11	43.2	1.0	1.7	1	1	0	1	1	1	1	Carboxylesterase	family
Chlorophyllase2	PF12740.7	gi|227826693|ref|YP_002828472.1|	-	5.4e-07	28.8	0.0	7.7e-07	28.3	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
Say1_Mug180	PF10340.9	gi|227826693|ref|YP_002828472.1|	-	1.1e-05	24.4	0.0	1.5e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	Steryl	acetyl	hydrolase
Chlorophyllase	PF07224.11	gi|227826693|ref|YP_002828472.1|	-	0.00031	19.8	0.0	0.00041	19.4	0.0	1.1	1	0	0	1	1	1	1	Chlorophyllase
DUF2974	PF11187.8	gi|227826693|ref|YP_002828472.1|	-	0.061	12.9	0.0	0.076	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2974)
Esterase	PF00756.20	gi|227826693|ref|YP_002828472.1|	-	0.079	12.6	1.3	3.4	7.2	0.0	2.2	1	1	0	2	2	2	0	Putative	esterase
Peptidase_S9	PF00326.21	gi|227826693|ref|YP_002828472.1|	-	0.18	11.3	0.0	0.36	10.3	0.0	1.4	1	1	0	1	1	1	0	Prolyl	oligopeptidase	family
ADH_N	PF08240.12	gi|227826694|ref|YP_002828473.1|	-	1.8e-28	98.6	0.0	3.6e-28	97.6	0.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227826694|ref|YP_002828473.1|	-	5.4e-24	84.6	0.1	8.4e-24	84.0	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227826694|ref|YP_002828473.1|	-	4.6e-12	47.1	0.0	8.2e-12	46.3	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
LDcluster4	PF18306.1	gi|227826694|ref|YP_002828473.1|	-	0.00018	21.1	1.8	0.00033	20.3	1.8	1.4	1	0	0	1	1	1	1	SLOG	cluster4	family
SIS_2	PF13580.6	gi|227826694|ref|YP_002828473.1|	-	0.0056	16.7	0.6	0.017	15.2	0.6	1.8	1	0	0	1	1	1	1	SIS	domain
Epimerase	PF01370.21	gi|227826694|ref|YP_002828473.1|	-	0.014	14.8	0.2	0.022	14.3	0.2	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|227826694|ref|YP_002828473.1|	-	0.026	13.9	0.5	0.049	12.9	0.5	1.5	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
ELFV_dehydrog	PF00208.21	gi|227826694|ref|YP_002828473.1|	-	0.03	14.0	2.0	0.049	13.3	2.0	1.3	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|227826694|ref|YP_002828473.1|	-	0.033	13.5	4.5	0.069	12.4	4.5	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
adh_short	PF00106.25	gi|227826694|ref|YP_002828473.1|	-	0.057	12.9	3.6	0.12	11.9	3.1	1.8	1	1	0	1	1	1	0	short	chain	dehydrogenase
CAP18_C	PF12153.8	gi|227826694|ref|YP_002828473.1|	-	0.058	13.3	0.2	0.23	11.3	0.2	2.1	1	0	0	1	1	1	0	LPS	binding	domain	of	CAP18	(C	terminal)
PTS_IIB	PF02302.17	gi|227826694|ref|YP_002828473.1|	-	0.067	13.9	0.3	0.2	12.3	0.3	1.8	1	0	0	1	1	1	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
E1-N	PF14463.6	gi|227826694|ref|YP_002828473.1|	-	0.11	12.3	0.1	0.26	11.1	0.1	1.6	1	0	0	1	1	1	0	E1	N-terminal	domain
Eno-Rase_NADH_b	PF12242.8	gi|227826694|ref|YP_002828473.1|	-	0.2	11.5	1.8	0.44	10.4	1.8	1.6	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Thiolase_N	PF00108.23	gi|227826695|ref|YP_002828474.1|	-	6.5e-66	222.4	0.0	8.3e-66	222.0	0.0	1.1	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227826695|ref|YP_002828474.1|	-	2.1e-45	153.3	0.8	3.1e-44	149.5	0.4	2.4	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|227826695|ref|YP_002828474.1|	-	8.1e-07	28.9	0.4	1.3e-05	24.9	0.0	3.0	2	1	1	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
SpoVAD	PF07451.11	gi|227826695|ref|YP_002828474.1|	-	0.00043	19.1	0.0	0.00075	18.3	0.0	1.3	1	0	0	1	1	1	1	Stage	V	sporulation	protein	AD	(SpoVAD)
Acyl-CoA_dh_1	PF00441.24	gi|227826696|ref|YP_002828475.1|	-	2.6e-13	50.4	0.0	5.5e-13	49.4	0.0	1.5	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|227826696|ref|YP_002828475.1|	-	0.0094	16.2	0.0	0.015	15.6	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Ribonuc_red_sm	PF00268.21	gi|227826697|ref|YP_002828476.1|	-	9.8e-24	84.3	0.0	1.2e-23	84.0	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	small	chain
DUF455	PF04305.14	gi|227826697|ref|YP_002828476.1|	-	0.00017	21.2	0.0	0.082	12.4	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF455)
Rubrerythrin	PF02915.17	gi|227826697|ref|YP_002828476.1|	-	0.00048	20.5	0.2	1.6	9.1	0.0	2.5	2	0	0	2	2	2	2	Rubrerythrin
Ferritin_2	PF13668.6	gi|227826697|ref|YP_002828476.1|	-	0.071	13.3	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	Ferritin-like	domain
E2F_TDP	PF02319.20	gi|227826697|ref|YP_002828476.1|	-	0.099	12.7	0.0	0.25	11.4	0.0	1.7	1	0	0	1	1	1	0	E2F/DP	family	winged-helix	DNA-binding	domain
AurF	PF11583.8	gi|227826697|ref|YP_002828476.1|	-	0.11	11.8	0.0	3.6	6.8	0.0	2.7	3	0	0	3	3	3	0	P-aminobenzoate	N-oxygenase	AurF
adh_short	PF00106.25	gi|227826698|ref|YP_002828477.1|	-	6.8e-51	172.5	1.3	9.2e-51	172.1	1.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|227826698|ref|YP_002828477.1|	-	6.7e-48	163.3	0.4	8.2e-48	163.0	0.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|227826698|ref|YP_002828477.1|	-	2.9e-07	30.6	0.4	3.8e-07	30.2	0.4	1.1	1	0	0	1	1	1	1	KR	domain
THF_DHG_CYH_C	PF02882.19	gi|227826698|ref|YP_002828477.1|	-	0.098	12.0	0.3	0.34	10.2	0.2	1.9	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Alba	PF01918.21	gi|227826698|ref|YP_002828477.1|	-	0.1	12.5	0.1	0.27	11.1	0.1	1.7	1	0	0	1	1	1	0	Alba
Epimerase	PF01370.21	gi|227826698|ref|YP_002828477.1|	-	0.19	11.2	0.6	0.78	9.1	0.6	2.0	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
ADH_N	PF08240.12	gi|227826699|ref|YP_002828478.1|	-	2.6e-31	107.7	0.2	4.1e-31	107.1	0.2	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227826699|ref|YP_002828478.1|	-	1.9e-23	82.8	0.0	3e-23	82.2	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227826699|ref|YP_002828478.1|	-	4.7e-07	30.9	0.0	9.5e-07	29.9	0.0	1.5	2	0	0	2	2	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|227826699|ref|YP_002828478.1|	-	0.00011	21.6	1.0	0.00017	21.0	1.0	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Glu_dehyd_C	PF16912.5	gi|227826699|ref|YP_002828478.1|	-	0.00015	21.3	0.2	0.00044	19.8	0.2	1.6	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
TrkA_N	PF02254.18	gi|227826699|ref|YP_002828478.1|	-	0.00039	20.7	0.4	0.00073	19.8	0.4	1.5	1	0	0	1	1	1	1	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|227826699|ref|YP_002828478.1|	-	0.00094	19.4	0.2	0.0015	18.8	0.2	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ThiF	PF00899.21	gi|227826699|ref|YP_002828478.1|	-	0.0014	18.0	0.0	0.0022	17.4	0.0	1.3	1	0	0	1	1	1	1	ThiF	family
2-Hacid_dh_C	PF02826.19	gi|227826699|ref|YP_002828478.1|	-	0.0019	17.6	0.0	0.0031	16.9	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
PALP	PF00291.25	gi|227826699|ref|YP_002828478.1|	-	0.0036	16.7	0.3	0.0059	16.1	0.3	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PglD_N	PF17836.1	gi|227826699|ref|YP_002828478.1|	-	0.0044	17.6	1.0	0.009	16.6	0.2	2.0	2	0	0	2	2	2	1	PglD	N-terminal	domain
ELFV_dehydrog	PF00208.21	gi|227826699|ref|YP_002828478.1|	-	0.045	13.5	0.2	0.075	12.7	0.2	1.3	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Methyltransf_12	PF08242.12	gi|227826699|ref|YP_002828478.1|	-	0.099	13.4	0.0	0.23	12.2	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
DUF3211	PF11485.8	gi|227826700|ref|YP_002828479.1|	-	1.7e-39	135.1	1.5	1.9e-39	135.0	1.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
HpaB_N	PF11794.8	gi|227826701|ref|YP_002828480.1|	-	2.4e-82	276.7	1.7	3.5e-82	276.1	1.7	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.13	gi|227826701|ref|YP_002828480.1|	-	1.6e-52	177.5	0.1	2.4e-52	177.0	0.1	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Acyl-CoA_dh_M	PF02770.19	gi|227826701|ref|YP_002828480.1|	-	0.0023	18.1	0.0	0.0076	16.4	0.0	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
Sugar_tr	PF00083.24	gi|227826703|ref|YP_002828482.1|	-	3.2e-42	144.9	24.3	3.7e-42	144.7	24.3	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227826703|ref|YP_002828482.1|	-	3.4e-34	118.3	51.8	2.3e-27	95.8	28.4	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|227826703|ref|YP_002828482.1|	-	1.2e-08	34.7	10.2	1.2e-08	34.7	10.2	2.0	2	1	1	3	3	3	1	Uncharacterised	MFS-type	transporter	YbfB
TetR_N	PF00440.23	gi|227826704|ref|YP_002828483.1|	-	1.2e-13	50.6	0.1	2.2e-13	49.8	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
SCP2	PF02036.17	gi|227826705|ref|YP_002828484.1|	-	0.082	13.4	0.0	0.15	12.5	0.0	1.6	1	1	0	1	1	1	0	SCP-2	sterol	transfer	family
Thiolase_N	PF00108.23	gi|227826706|ref|YP_002828485.1|	-	5e-05	22.8	0.0	7.7e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227826706|ref|YP_002828485.1|	-	0.00016	21.3	0.1	0.012	15.2	0.0	2.4	2	0	0	2	2	2	2	Thiolase,	C-terminal	domain
DUF35_N	PF12172.8	gi|227826707|ref|YP_002828486.1|	-	2e-11	43.5	0.9	2.9e-11	43.0	0.9	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|227826707|ref|YP_002828486.1|	-	6.1e-06	26.1	0.0	9e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
HypA	PF01155.19	gi|227826707|ref|YP_002828486.1|	-	0.00016	21.6	0.1	0.00026	21.0	0.1	1.4	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|227826707|ref|YP_002828486.1|	-	0.00063	19.5	1.7	0.099	12.5	0.3	2.3	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
TF_Zn_Ribbon	PF08271.12	gi|227826707|ref|YP_002828486.1|	-	0.00063	19.2	1.5	0.24	10.9	0.1	2.3	2	0	0	2	2	2	2	TFIIB	zinc-binding
DNA_RNApol_7kD	PF03604.13	gi|227826707|ref|YP_002828486.1|	-	0.0019	17.9	2.1	0.0068	16.1	0.3	2.3	2	0	0	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
TackOD1	PF18551.1	gi|227826707|ref|YP_002828486.1|	-	0.0025	17.5	0.2	0.0037	17.0	0.2	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zf-ribbon_3	PF13248.6	gi|227826707|ref|YP_002828486.1|	-	0.0039	16.5	1.8	0.51	9.8	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc-ribbon_6	PF10005.9	gi|227826707|ref|YP_002828486.1|	-	0.0051	17.5	0.1	0.0059	17.3	0.1	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|227826707|ref|YP_002828486.1|	-	0.0054	16.7	0.8	0.008	16.2	0.8	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
FdhE	PF04216.12	gi|227826707|ref|YP_002828486.1|	-	0.011	15.7	0.1	0.014	15.3	0.1	1.1	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
zinc_ribbon_15	PF17032.5	gi|227826707|ref|YP_002828486.1|	-	0.012	16.3	1.4	0.019	15.7	1.4	1.3	1	0	0	1	1	1	0	zinc-ribbon	family
Zn-ribbon_8	PF09723.10	gi|227826707|ref|YP_002828486.1|	-	0.016	15.3	4.9	0.08	13.1	4.9	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
NRDD	PF13597.6	gi|227826707|ref|YP_002828486.1|	-	0.021	13.7	0.5	0.027	13.2	0.5	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
Nudix_N_2	PF14803.6	gi|227826707|ref|YP_002828486.1|	-	0.036	14.0	3.2	0.49	10.4	0.3	2.3	1	1	1	2	2	2	0	Nudix	N-terminal
zinc_ribbon_13	PF09855.9	gi|227826707|ref|YP_002828486.1|	-	0.042	14.0	2.4	5.1	7.3	0.6	2.3	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zinc_ribbon_2	PF13240.6	gi|227826707|ref|YP_002828486.1|	-	0.043	13.5	5.6	0.4	10.5	0.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|227826707|ref|YP_002828486.1|	-	0.046	14.1	1.9	7.9	6.9	0.2	2.3	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zinc_ribbon_4	PF13717.6	gi|227826707|ref|YP_002828486.1|	-	0.049	13.5	2.5	0.39	10.7	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2387	PF09526.10	gi|227826707|ref|YP_002828486.1|	-	0.088	13.0	1.2	9.9	6.4	0.1	2.3	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|227826707|ref|YP_002828486.1|	-	0.098	12.6	4.2	0.25	11.4	0.2	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|227826707|ref|YP_002828486.1|	-	0.1	12.3	8.7	0.86	9.3	0.8	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Ribosomal_L32p	PF01783.23	gi|227826707|ref|YP_002828486.1|	-	0.14	12.5	0.2	0.22	11.8	0.2	1.3	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
zf-HYPF	PF07503.12	gi|227826707|ref|YP_002828486.1|	-	0.26	11.1	9.7	0.9	9.4	1.8	2.3	1	1	1	2	2	2	0	HypF	finger
Zn_ribbon_recom	PF13408.6	gi|227826707|ref|YP_002828486.1|	-	0.53	10.8	3.7	14	6.3	0.2	2.3	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|227826707|ref|YP_002828486.1|	-	0.63	9.8	4.3	3.8	7.4	0.1	2.5	3	0	0	3	3	2	0	A2L	zinc	ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|227826707|ref|YP_002828486.1|	-	0.75	10.0	4.7	1.8	8.8	3.9	2.2	2	1	1	3	3	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Rubredoxin_2	PF18073.1	gi|227826707|ref|YP_002828486.1|	-	1	9.1	5.6	3.2	7.6	5.6	1.7	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-Dof	PF02701.15	gi|227826707|ref|YP_002828486.1|	-	3.1	8.0	7.2	11	6.3	2.4	2.2	1	1	1	2	2	2	0	Dof	domain,	zinc	finger
AMP-binding	PF00501.28	gi|227826708|ref|YP_002828487.1|	-	1.6e-86	290.5	0.0	1.9e-86	290.3	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227826708|ref|YP_002828487.1|	-	1.1e-20	74.3	0.0	2.7e-20	73.1	0.0	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|227826709|ref|YP_002828488.1|	-	2.8e-24	86.0	0.1	5.2e-24	85.1	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227826709|ref|YP_002828488.1|	-	3.2e-20	72.1	0.0	5.5e-20	71.4	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_1	PF00441.24	gi|227826709|ref|YP_002828488.1|	-	3.8e-16	59.6	0.8	3.7e-13	49.9	0.8	2.3	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_ox_N	PF14749.6	gi|227826709|ref|YP_002828488.1|	-	0.059	13.9	0.0	0.1	13.2	0.0	1.5	1	0	0	1	1	1	0	Acyl-coenzyme	A	oxidase	N-terminal
ECH_1	PF00378.20	gi|227826710|ref|YP_002828489.1|	-	1.2e-66	224.6	0.0	1.8e-66	224.0	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
3HCDH_N	PF02737.18	gi|227826710|ref|YP_002828489.1|	-	1.6e-63	213.9	0.2	2.6e-63	213.1	0.2	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|227826710|ref|YP_002828489.1|	-	4.1e-47	158.8	0.1	7.7e-25	87.3	0.0	2.9	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
ECH_2	PF16113.5	gi|227826710|ref|YP_002828489.1|	-	7.6e-39	134.1	0.0	6e-36	124.6	0.0	2.3	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
NAD_binding_2	PF03446.15	gi|227826710|ref|YP_002828489.1|	-	0.0057	16.8	0.0	0.012	15.8	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Med9	PF07544.13	gi|227826710|ref|YP_002828489.1|	-	0.015	15.4	0.2	0.029	14.4	0.2	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
SPOUT_MTase_2	PF14419.6	gi|227826710|ref|YP_002828489.1|	-	0.025	14.0	0.2	3.7	6.9	0.1	2.4	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
AlaDh_PNT_C	PF01262.21	gi|227826710|ref|YP_002828489.1|	-	0.027	13.7	0.1	0.049	12.9	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|227826710|ref|YP_002828489.1|	-	0.043	13.1	0.0	0.079	12.2	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|227826710|ref|YP_002828489.1|	-	0.061	12.7	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Lactamase_B	PF00753.27	gi|227826711|ref|YP_002828490.1|	-	1.7e-23	83.6	0.0	3.7e-23	82.6	0.0	1.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227826711|ref|YP_002828490.1|	-	0.00057	19.4	0.0	0.0011	18.6	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Nup54	PF13874.6	gi|227826711|ref|YP_002828490.1|	-	0.027	14.6	0.0	0.045	13.8	0.0	1.3	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
Lactamase_B_3	PF13483.6	gi|227826711|ref|YP_002828490.1|	-	0.059	13.3	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Glyoxalase	PF00903.25	gi|227826711|ref|YP_002828490.1|	-	0.066	13.4	0.0	0.24	11.6	0.0	1.9	2	0	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
SF3a60_bindingd	PF12108.8	gi|227826711|ref|YP_002828490.1|	-	0.4	10.6	4.2	0.49	10.3	1.9	2.4	1	1	1	2	2	2	0	Splicing	factor	SF3a60	binding	domain
CTK3_C	PF12350.8	gi|227826711|ref|YP_002828490.1|	-	0.43	10.8	3.0	0.5	10.5	1.1	2.0	2	0	0	2	2	2	0	CTD	kinase	subunit	gamma	CTK3	C-terminus
Sugar_tr	PF00083.24	gi|227826712|ref|YP_002828491.1|	-	9.3e-40	136.8	20.2	1.1e-39	136.6	20.2	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227826712|ref|YP_002828491.1|	-	5.9e-31	107.7	33.9	5.9e-31	107.7	33.9	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|227826712|ref|YP_002828491.1|	-	1.4e-07	31.2	10.2	1.4e-07	31.2	10.2	1.8	2	0	0	2	2	2	1	Uncharacterised	MFS-type	transporter	YbfB
TRI12	PF06609.13	gi|227826712|ref|YP_002828491.1|	-	0.0025	16.3	8.0	0.0041	15.6	8.0	1.3	1	0	0	1	1	1	1	Fungal	trichothecene	efflux	pump	(TRI12)
Lactamase_B	PF00753.27	gi|227826713|ref|YP_002828492.1|	-	1e-26	94.2	0.0	1.3e-26	93.8	0.0	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227826713|ref|YP_002828492.1|	-	0.1	12.1	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
FAA_hydrolase	PF01557.18	gi|227826714|ref|YP_002828493.1|	-	1.4e-52	178.5	0.0	2e-52	178.1	0.0	1.2	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Abhydrolase_3	PF07859.13	gi|227826715|ref|YP_002828494.1|	-	2e-71	240.2	0.0	2.4e-71	239.9	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Say1_Mug180	PF10340.9	gi|227826715|ref|YP_002828494.1|	-	9.9e-10	37.8	0.6	1.4e-09	37.3	0.6	1.1	1	0	0	1	1	1	1	Steryl	acetyl	hydrolase
Peptidase_S9	PF00326.21	gi|227826715|ref|YP_002828494.1|	-	5e-06	26.1	0.0	8e-06	25.5	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
COesterase	PF00135.28	gi|227826715|ref|YP_002828494.1|	-	1.4e-05	24.2	1.7	0.0001	21.3	1.7	1.9	1	1	0	1	1	1	1	Carboxylesterase	family
AXE1	PF05448.12	gi|227826715|ref|YP_002828494.1|	-	4.2e-05	22.4	0.2	0.036	12.7	0.1	2.2	1	1	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Chlorophyllase2	PF12740.7	gi|227826715|ref|YP_002828494.1|	-	8.1e-05	21.7	0.0	0.00012	21.1	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
Peptidase_S15	PF02129.18	gi|227826715|ref|YP_002828494.1|	-	0.077	12.6	0.1	0.29	10.7	0.1	1.9	2	1	0	2	2	2	0	X-Pro	dipeptidyl-peptidase	(S15	family)
PAF-AH_p_II	PF03403.13	gi|227826715|ref|YP_002828494.1|	-	0.089	11.3	0.0	0.85	8.1	0.0	2.0	1	1	1	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
PTE	PF02126.18	gi|227826716|ref|YP_002828495.1|	-	1.1e-77	261.5	0.0	1.2e-77	261.3	0.0	1.0	1	0	0	1	1	1	1	Phosphotriesterase	family
AMP-binding	PF00501.28	gi|227826717|ref|YP_002828496.1|	-	1.1e-107	360.3	0.0	1.3e-107	360.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227826717|ref|YP_002828496.1|	-	2.7e-20	73.1	0.1	5.3e-20	72.2	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
COXG	PF06240.13	gi|227826718|ref|YP_002828497.1|	-	7.7e-43	145.6	0.1	8.6e-43	145.4	0.1	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DAO	PF01266.24	gi|227826719|ref|YP_002828498.1|	-	1.9e-50	172.4	0.0	2.2e-50	172.2	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|227826719|ref|YP_002828498.1|	-	2.5e-07	30.3	0.1	0.00091	18.6	0.4	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|227826719|ref|YP_002828498.1|	-	1.1e-05	24.8	0.3	0.0016	17.6	0.2	2.1	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227826719|ref|YP_002828498.1|	-	0.00022	20.6	1.0	0.002	17.4	0.1	2.2	1	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|227826719|ref|YP_002828498.1|	-	0.00024	21.2	1.0	0.00092	19.4	0.5	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|227826719|ref|YP_002828498.1|	-	0.011	14.4	0.2	0.021	13.5	0.2	1.4	1	0	0	1	1	1	0	HI0933-like	protein
GIDA	PF01134.22	gi|227826719|ref|YP_002828498.1|	-	0.029	13.4	1.4	0.1	11.6	0.1	2.0	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|227826719|ref|YP_002828498.1|	-	0.031	13.6	0.4	0.11	11.8	0.1	1.8	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|227826719|ref|YP_002828498.1|	-	0.044	14.3	5.5	0.43	11.2	0.4	3.6	5	0	0	5	5	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
Mqo	PF06039.15	gi|227826719|ref|YP_002828498.1|	-	0.057	12.0	0.0	0.089	11.3	0.0	1.2	1	0	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
Trp_halogenase	PF04820.14	gi|227826719|ref|YP_002828498.1|	-	0.076	11.9	0.4	0.12	11.2	0.4	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
Thi4	PF01946.17	gi|227826719|ref|YP_002828498.1|	-	0.47	9.7	3.7	0.45	9.7	0.8	2.3	1	1	0	2	2	2	0	Thi4	family
FGGY_N	PF00370.21	gi|227826720|ref|YP_002828499.1|	-	1.1e-59	202.0	0.1	1.3e-59	201.8	0.1	1.0	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
Fic_N	PF13784.6	gi|227826720|ref|YP_002828499.1|	-	0.077	13.0	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Fic/DOC	family	N-terminal
ABC2_membrane	PF01061.24	gi|227826722|ref|YP_002828501.1|	-	1.9e-35	122.2	22.2	1.9e-35	122.2	22.2	2.0	1	1	1	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|227826722|ref|YP_002828501.1|	-	1.1e-14	54.4	25.8	1.1e-14	54.4	25.8	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|227826722|ref|YP_002828501.1|	-	4.5e-05	22.9	27.5	0.00014	21.2	27.5	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|227826722|ref|YP_002828501.1|	-	0.0027	17.7	11.1	0.0027	17.7	11.1	2.3	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
EMP70	PF02990.16	gi|227826722|ref|YP_002828501.1|	-	0.0097	14.6	0.9	0.0097	14.6	0.9	1.9	1	1	0	2	2	2	1	Endomembrane	protein	70
ABC_tran	PF00005.27	gi|227826723|ref|YP_002828502.1|	-	1.9e-31	109.4	0.0	3.1e-31	108.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
DUF4162	PF13732.6	gi|227826723|ref|YP_002828502.1|	-	3.4e-14	53.3	1.0	6.3e-14	52.5	0.4	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_21	PF13304.6	gi|227826723|ref|YP_002828502.1|	-	4.4e-12	46.4	0.1	3.9e-08	33.4	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|227826723|ref|YP_002828502.1|	-	7.6e-05	23.3	0.5	0.00014	22.4	0.4	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227826723|ref|YP_002828502.1|	-	0.00014	21.6	0.1	0.00031	20.4	0.1	1.6	1	1	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|227826723|ref|YP_002828502.1|	-	0.00053	19.8	0.0	0.59	9.8	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|227826723|ref|YP_002828502.1|	-	0.00069	19.1	0.6	0.0066	15.9	0.1	2.4	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|227826723|ref|YP_002828502.1|	-	0.026	14.5	0.0	0.041	13.8	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA	PF00004.29	gi|227826723|ref|YP_002828502.1|	-	0.11	13.0	0.8	1.3	9.5	0.8	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PadR	PF03551.14	gi|227826724|ref|YP_002828503.1|	-	1.1e-10	41.4	0.0	2.4e-10	40.3	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
RTP	PF02334.16	gi|227826724|ref|YP_002828503.1|	-	0.00051	20.7	0.0	0.0015	19.1	0.0	1.8	1	1	0	1	1	1	1	Replication	terminator	protein
HTH_45	PF14947.6	gi|227826724|ref|YP_002828503.1|	-	0.00098	19.1	0.8	0.0022	17.9	0.1	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix
ANAPC2	PF08672.11	gi|227826724|ref|YP_002828503.1|	-	0.0076	16.7	0.1	0.07	13.6	0.0	2.3	2	1	0	2	2	2	1	Anaphase	promoting	complex	(APC)	subunit	2
Mrr_N	PF14338.6	gi|227826724|ref|YP_002828503.1|	-	0.011	15.9	0.1	0.034	14.3	0.1	1.9	1	0	0	1	1	1	0	Mrr	N-terminal	domain
ATPase_2	PF01637.18	gi|227826725|ref|YP_002828504.1|	-	2.7e-05	24.2	0.1	3.4e-05	23.9	0.1	1.1	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|227826725|ref|YP_002828504.1|	-	0.0012	19.2	0.0	0.0012	19.2	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|227826725|ref|YP_002828504.1|	-	0.032	14.3	0.1	0.043	13.8	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
DDE_Tnp_1_5	PF13737.6	gi|227826726|ref|YP_002828505.1|	-	0.0017	18.7	0.0	0.0017	18.6	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
4HBT	PF03061.22	gi|227826727|ref|YP_002828506.1|	-	2e-16	60.1	0.0	3.2e-16	59.5	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|227826727|ref|YP_002828506.1|	-	0.017	15.3	0.0	0.04	14.0	0.0	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|227826727|ref|YP_002828506.1|	-	0.024	14.9	0.0	0.03	14.6	0.0	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
DEDD_Tnp_IS110	PF01548.17	gi|227826728|ref|YP_002828507.1|	-	0.03	14.2	0.0	0.034	14.0	0.0	1.1	1	0	0	1	1	1	0	Transposase
HTH_23	PF13384.6	gi|227826729|ref|YP_002828508.1|	-	1.4e-10	40.6	0.0	2.4e-10	39.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|227826729|ref|YP_002828508.1|	-	3.7e-10	39.3	0.6	8.3e-10	38.2	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|227826729|ref|YP_002828508.1|	-	8.7e-10	39.1	0.3	8.7e-10	39.1	0.3	1.6	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|227826729|ref|YP_002828508.1|	-	5.5e-09	35.9	0.1	9.2e-09	35.2	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|227826729|ref|YP_002828508.1|	-	9e-09	35.3	0.2	3.9e-08	33.3	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|227826729|ref|YP_002828508.1|	-	3.1e-05	24.4	0.0	5.7e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
Terminase_5	PF06056.12	gi|227826729|ref|YP_002828508.1|	-	0.00071	19.4	0.2	0.0025	17.7	0.0	2.0	2	1	1	3	3	3	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
Sigma70_r4_2	PF08281.12	gi|227826729|ref|YP_002828508.1|	-	0.018	14.7	0.0	0.032	13.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
Tma16	PF11176.8	gi|227826729|ref|YP_002828508.1|	-	0.035	14.0	0.1	0.063	13.2	0.1	1.5	1	1	0	1	1	1	0	Translation	machinery-associated	protein	16
PapB	PF03333.13	gi|227826729|ref|YP_002828508.1|	-	0.12	12.5	0.0	0.25	11.4	0.0	1.5	1	0	0	1	1	1	0	Adhesin	biosynthesis	transcription	regulatory	protein
DUF4322	PF14210.6	gi|227826730|ref|YP_002828509.1|	-	5.6e-23	80.6	0.1	8.2e-23	80.1	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
HTH_29	PF13551.6	gi|227826730|ref|YP_002828509.1|	-	0.17	12.0	0.0	0.26	11.3	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
NTP_transf_2	PF01909.23	gi|227826731|ref|YP_002828510.1|	-	2.3e-13	50.2	0.1	3.2e-13	49.8	0.1	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227826731|ref|YP_002828510.1|	-	1.4e-11	44.3	0.0	2.5e-11	43.5	0.0	1.3	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DNA_pol_B_palm	PF14792.6	gi|227826731|ref|YP_002828510.1|	-	0.029	14.6	0.0	0.038	14.2	0.0	1.3	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
HEPN	PF05168.14	gi|227826732|ref|YP_002828511.1|	-	6.7e-33	113.3	0.4	7.7e-33	113.1	0.4	1.0	1	0	0	1	1	1	1	HEPN	domain
Membr_traf_MHD	PF10540.9	gi|227826732|ref|YP_002828511.1|	-	0.1	12.7	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Munc13	(mammalian	uncoordinated)	homology	domain
DUF2551	PF10826.8	gi|227826733|ref|YP_002828512.1|	-	0.02	15.1	1.0	2	8.7	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2551)
DUF1803	PF08820.10	gi|227826733|ref|YP_002828512.1|	-	0.054	13.5	2.0	0.11	12.6	0.6	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1803)
Rdx	PF10262.9	gi|227826734|ref|YP_002828513.1|	-	1e-17	64.1	0.0	1.5e-17	63.5	0.0	1.3	1	0	0	1	1	1	1	Rdx	family
YHS	PF04945.13	gi|227826734|ref|YP_002828513.1|	-	4.2e-16	58.8	0.5	6.2e-16	58.2	0.5	1.3	1	0	0	1	1	1	1	YHS	domain
zf-FCS	PF06467.14	gi|227826734|ref|YP_002828513.1|	-	0.0017	18.3	0.6	0.003	17.5	0.6	1.5	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.10	gi|227826734|ref|YP_002828513.1|	-	0.0029	17.9	2.1	0.0029	17.9	2.1	1.6	2	0	0	2	2	2	1	Archaeal	TRASH	domain
DpnI_C	PF17726.1	gi|227826734|ref|YP_002828513.1|	-	0.053	13.6	0.1	0.14	12.3	0.0	1.8	2	0	0	2	2	2	0	Dam-replacing	HTH	domain
Pyr_redox_2	PF07992.14	gi|227826735|ref|YP_002828514.1|	-	8.1e-60	202.5	0.0	9.9e-60	202.2	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227826735|ref|YP_002828514.1|	-	7.4e-19	68.1	0.2	9.8e-17	61.3	0.3	3.1	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Reductase_C	PF14759.6	gi|227826735|ref|YP_002828514.1|	-	3.7e-15	56.3	0.0	1.9e-14	54.0	0.0	2.1	2	0	0	2	2	2	1	Reductase	C-terminal
Pyr_redox_3	PF13738.6	gi|227826735|ref|YP_002828514.1|	-	6.3e-10	38.8	0.0	1e-09	38.1	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|227826735|ref|YP_002828514.1|	-	0.00049	19.5	0.0	0.97	8.7	0.0	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_2	PF00890.24	gi|227826735|ref|YP_002828514.1|	-	0.0022	17.2	0.0	11	5.0	0.0	3.1	3	0	0	3	3	3	0	FAD	binding	domain
Shikimate_DH	PF01488.20	gi|227826735|ref|YP_002828514.1|	-	0.0027	17.7	0.4	0.59	10.2	0.1	3.3	3	0	0	3	3	3	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_9	PF13454.6	gi|227826735|ref|YP_002828514.1|	-	0.0037	17.3	0.2	11	6.0	0.0	3.9	3	1	1	4	4	4	0	FAD-NAD(P)-binding
FAD_binding_3	PF01494.19	gi|227826735|ref|YP_002828514.1|	-	0.007	15.6	0.1	0.055	12.7	0.1	2.0	2	0	0	2	2	2	1	FAD	binding	domain
ThiF	PF00899.21	gi|227826735|ref|YP_002828514.1|	-	0.012	15.0	0.0	0.1	12.0	0.0	2.1	2	0	0	2	2	2	0	ThiF	family
TrkA_N	PF02254.18	gi|227826735|ref|YP_002828514.1|	-	0.015	15.6	0.1	2.3	8.5	0.1	2.5	2	0	0	2	2	2	0	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|227826735|ref|YP_002828514.1|	-	0.02	15.4	0.0	2.9	8.4	0.1	2.4	2	0	0	2	2	2	0	Putative	NAD(P)-binding
DAO	PF01266.24	gi|227826735|ref|YP_002828514.1|	-	0.027	14.1	1.5	1.5	8.4	0.6	3.0	3	0	0	3	3	3	0	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|227826735|ref|YP_002828514.1|	-	0.041	14.1	0.0	2.3	8.5	0.0	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|227826735|ref|YP_002828514.1|	-	0.1	11.6	0.1	42	3.0	0.1	3.2	2	1	1	3	3	3	0	Lycopene	cyclase	protein
GIDA	PF01134.22	gi|227826735|ref|YP_002828514.1|	-	0.14	11.2	0.8	4.5	6.3	0.4	3.0	3	1	1	4	4	4	0	Glucose	inhibited	division	protein	A
3HCDH_N	PF02737.18	gi|227826735|ref|YP_002828514.1|	-	0.18	11.6	0.2	0.3	10.9	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Glyco_hydro_12	PF01670.16	gi|227826737|ref|YP_002828516.1|	-	2.4e-14	53.9	3.6	3.9e-14	53.2	3.6	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	12
LPD24	PF18839.1	gi|227826737|ref|YP_002828516.1|	-	0.03	14.6	0.7	0.078	13.2	0.7	1.7	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	24
DmpG_comm	PF07836.11	gi|227826737|ref|YP_002828516.1|	-	0.15	11.6	0.0	0.31	10.6	0.0	1.4	1	0	0	1	1	1	0	DmpG-like	communication	domain
UPF0047	PF01894.17	gi|227826738|ref|YP_002828517.1|	-	3.4e-34	117.4	0.0	4e-34	117.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
Luciferase_N	PF05295.11	gi|227826738|ref|YP_002828517.1|	-	0.054	13.5	0.0	0.12	12.5	0.0	1.5	1	1	0	1	1	1	0	Luciferase/LBP	N-terminal	domain
Transglut_core	PF01841.19	gi|227826739|ref|YP_002828518.1|	-	2.6e-19	69.7	0.0	4.6e-19	68.9	0.0	1.4	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF553	PF04473.12	gi|227826739|ref|YP_002828518.1|	-	9.6e-08	31.7	0.0	2e-07	30.7	0.0	1.6	1	1	0	1	1	1	1	Transglutaminase-like	domain
Transglut_core3	PF13471.6	gi|227826739|ref|YP_002828518.1|	-	1.8e-05	24.6	0.0	2.8e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF973	PF06157.11	gi|227826740|ref|YP_002828519.1|	-	9.3e-25	87.3	8.7	1.1e-24	87.1	8.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
HTH_24	PF13412.6	gi|227826741|ref|YP_002828520.1|	-	2.6e-15	55.7	1.7	7e-15	54.3	1.7	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|227826741|ref|YP_002828520.1|	-	1.3e-12	47.3	0.2	3.6e-12	45.9	0.1	1.8	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|227826741|ref|YP_002828520.1|	-	4.7e-09	36.1	0.0	7.6e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|227826741|ref|YP_002828520.1|	-	5.9e-07	29.5	0.0	1e-06	28.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|227826741|ref|YP_002828520.1|	-	5.1e-06	25.9	0.1	3.5e-05	23.3	0.1	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|227826741|ref|YP_002828520.1|	-	3.7e-05	23.4	0.1	0.0017	18.1	0.0	2.9	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|227826741|ref|YP_002828520.1|	-	9.1e-05	22.3	0.5	0.00026	20.9	0.5	1.8	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|227826741|ref|YP_002828520.1|	-	0.00012	21.9	0.1	0.00038	20.3	0.0	1.8	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|227826741|ref|YP_002828520.1|	-	0.0006	19.7	0.0	0.0032	17.3	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|227826741|ref|YP_002828520.1|	-	0.00066	19.5	0.0	0.0013	18.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.12	gi|227826741|ref|YP_002828520.1|	-	0.00071	19.2	0.2	0.0022	17.6	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_DeoR	PF08220.12	gi|227826741|ref|YP_002828520.1|	-	0.00091	18.9	0.1	0.0082	15.9	0.1	2.3	3	0	0	3	3	2	1	DeoR-like	helix-turn-helix	domain
HTH_30	PF13556.6	gi|227826741|ref|YP_002828520.1|	-	0.0017	18.1	0.0	0.0066	16.2	0.0	2.0	2	0	0	2	2	2	1	PucR	C-terminal	helix-turn-helix	domain
MerR_1	PF13411.6	gi|227826741|ref|YP_002828520.1|	-	0.0021	18.1	0.2	1.5	8.9	0.0	2.8	3	0	0	3	3	3	1	MerR	HTH	family	regulatory	protein
HTH_8	PF02954.19	gi|227826741|ref|YP_002828520.1|	-	0.0023	17.7	0.0	0.023	14.5	0.1	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	Fis	family
HTH_IclR	PF09339.10	gi|227826741|ref|YP_002828520.1|	-	0.0042	16.9	0.0	0.0086	15.9	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_10	PF04967.12	gi|227826741|ref|YP_002828520.1|	-	0.012	15.4	0.1	0.044	13.6	0.0	1.9	2	0	0	2	2	2	0	HTH	DNA	binding	domain
MerR	PF00376.23	gi|227826741|ref|YP_002828520.1|	-	0.012	15.4	0.0	0.075	12.8	0.0	2.2	2	0	0	2	2	2	0	MerR	family	regulatory	protein
HTH_Crp_2	PF13545.6	gi|227826741|ref|YP_002828520.1|	-	0.016	15.1	0.2	0.06	13.3	0.1	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|227826741|ref|YP_002828520.1|	-	0.021	14.6	2.4	0.21	11.4	0.2	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
DUF742	PF05331.11	gi|227826741|ref|YP_002828520.1|	-	0.027	14.3	0.0	0.05	13.4	0.0	1.4	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF742)
TrmB	PF01978.19	gi|227826741|ref|YP_002828520.1|	-	0.028	14.3	0.2	0.06	13.2	0.1	1.6	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|227826741|ref|YP_002828520.1|	-	0.04	14.4	0.1	0.35	11.4	0.1	2.1	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_28	PF13518.6	gi|227826741|ref|YP_002828520.1|	-	0.04	14.0	0.0	0.47	10.6	0.0	2.5	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|227826741|ref|YP_002828520.1|	-	0.052	13.6	0.6	0.92	9.6	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix
HTH_WhiA	PF02650.14	gi|227826741|ref|YP_002828520.1|	-	0.056	13.8	0.1	0.13	12.6	0.1	1.6	1	0	0	1	1	1	0	WhiA	C-terminal	HTH	domain
HTH_12	PF08461.10	gi|227826741|ref|YP_002828520.1|	-	0.06	13.3	1.4	0.56	10.2	0.6	2.6	2	1	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
TFIIE_alpha	PF02002.17	gi|227826741|ref|YP_002828520.1|	-	0.07	13.0	1.5	0.091	12.6	0.5	1.7	2	0	0	2	2	2	0	TFIIE	alpha	subunit
TPP_enzyme_C	PF02775.21	gi|227826742|ref|YP_002828521.1|	-	1.3e-18	67.2	0.1	1.9e-18	66.7	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|227826742|ref|YP_002828521.1|	-	0.003	16.8	0.0	0.0054	16.0	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
CoA_binding_3	PF13727.6	gi|227826742|ref|YP_002828521.1|	-	0.013	15.6	0.0	0.019	15.0	0.0	1.2	1	0	0	1	1	1	0	CoA-binding	domain
POR_N	PF01855.19	gi|227826743|ref|YP_002828522.1|	-	6.7e-65	219.1	0.1	8.7e-65	218.7	0.1	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|227826743|ref|YP_002828522.1|	-	4.3e-34	116.9	0.1	8.1e-34	116.0	0.1	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|227826743|ref|YP_002828522.1|	-	1.8e-05	24.6	0.0	4.9e-05	23.2	0.0	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|227826743|ref|YP_002828522.1|	-	0.0028	17.3	0.6	0.0065	16.1	0.6	1.6	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_21	PF14697.6	gi|227826744|ref|YP_002828523.1|	-	1.4e-12	47.6	14.1	2.1e-12	47.0	14.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227826744|ref|YP_002828523.1|	-	2.4e-09	36.6	19.5	1.9e-05	24.2	5.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227826744|ref|YP_002828523.1|	-	7.2e-06	26.5	13.0	1.4e-05	25.5	12.6	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227826744|ref|YP_002828523.1|	-	1e-05	26.4	8.7	0.00093	20.1	0.8	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|227826744|ref|YP_002828523.1|	-	2.1e-05	24.3	12.1	0.0013	18.7	2.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227826744|ref|YP_002828523.1|	-	3.2e-05	24.3	4.6	0.0056	17.1	0.3	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227826744|ref|YP_002828523.1|	-	0.00043	20.8	8.1	0.13	12.9	1.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227826744|ref|YP_002828523.1|	-	0.00063	19.8	14.4	0.017	15.2	2.7	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227826744|ref|YP_002828523.1|	-	0.0011	19.1	14.9	0.002	18.3	14.9	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|227826744|ref|YP_002828523.1|	-	0.0055	17.2	5.6	0.0055	17.2	5.6	2.6	2	1	1	3	3	3	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|227826744|ref|YP_002828523.1|	-	0.0061	17.0	17.4	0.051	14.1	4.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|227826744|ref|YP_002828523.1|	-	0.012	16.5	0.7	0.012	16.5	0.7	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227826744|ref|YP_002828523.1|	-	0.086	13.0	21.5	0.1	12.7	8.2	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|227826744|ref|YP_002828523.1|	-	4.8	8.0	16.5	0.83	10.4	3.7	2.5	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
MFS_1	PF07690.16	gi|227826745|ref|YP_002828524.1|	-	8.5e-39	133.5	49.6	1.5e-38	132.6	45.8	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227826745|ref|YP_002828524.1|	-	9.8e-06	24.7	10.1	9.8e-06	24.7	10.1	3.0	1	1	0	2	2	2	2	Sugar	(and	other)	transporter
Lactate_perm	PF02652.14	gi|227826746|ref|YP_002828525.1|	-	1.6e-106	357.2	36.4	2.3e-106	356.6	36.4	1.2	1	0	0	1	1	1	1	L-lactate	permease
DAD	PF02109.16	gi|227826746|ref|YP_002828525.1|	-	2.4	8.5	5.7	2.6	8.4	0.9	3.4	3	1	0	3	3	3	0	DAD	family
PIN	PF01850.21	gi|227826747|ref|YP_002828526.1|	-	1.6e-12	48.0	2.6	1.3e-11	45.1	2.6	1.9	1	1	0	1	1	1	1	PIN	domain
DUF5615	PF18480.1	gi|227826747|ref|YP_002828526.1|	-	0.011	15.5	0.0	0.016	14.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
Connexin50	PF03509.14	gi|227826747|ref|YP_002828526.1|	-	0.039	14.7	0.1	0.053	14.3	0.1	1.2	1	0	0	1	1	1	0	Gap	junction	alpha-8	protein	(Cx50)
VAPB_antitox	PF02697.14	gi|227826748|ref|YP_002828527.1|	-	1.2e-15	58.0	9.7	1.3e-15	57.9	9.7	1.0	1	0	0	1	1	1	1	Putative	antitoxin
TPM_phosphatase	PF04536.14	gi|227826748|ref|YP_002828527.1|	-	0.012	15.8	0.1	0.012	15.7	0.1	1.1	1	0	0	1	1	1	0	TPM	domain
CZB	PF13682.6	gi|227826748|ref|YP_002828527.1|	-	0.015	15.7	0.3	0.025	15.0	0.3	1.4	1	1	0	1	1	1	0	Chemoreceptor	zinc-binding	domain
Methyltransf_25	PF13649.6	gi|227826749|ref|YP_002828528.1|	-	6.9e-14	52.3	0.0	1.3e-13	51.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227826749|ref|YP_002828528.1|	-	2.9e-13	50.0	0.0	8e-13	48.6	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|227826749|ref|YP_002828528.1|	-	4.4e-11	43.3	0.0	9.7e-11	42.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227826749|ref|YP_002828528.1|	-	5.3e-10	39.3	0.2	1.3e-09	38.0	0.1	1.8	1	1	1	2	2	2	1	Methyltransferase	domain
TehB	PF03848.14	gi|227826749|ref|YP_002828528.1|	-	4.5e-06	26.2	0.4	9.7e-06	25.1	0.2	1.7	1	1	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_12	PF08242.12	gi|227826749|ref|YP_002828528.1|	-	4.8e-06	27.2	0.1	1.1e-05	26.1	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0180	PF03698.13	gi|227826749|ref|YP_002828528.1|	-	0.0073	16.5	0.2	25	5.2	0.0	3.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0180)
CheR	PF01739.18	gi|227826749|ref|YP_002828528.1|	-	0.014	14.9	0.1	1.9	7.9	0.0	2.7	3	0	0	3	3	3	0	CheR	methyltransferase,	SAM	binding	domain
TPMT	PF05724.11	gi|227826749|ref|YP_002828528.1|	-	0.067	12.8	0.0	0.095	12.3	0.0	1.2	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
Amidinotransf	PF02274.17	gi|227826749|ref|YP_002828528.1|	-	0.097	11.7	0.1	0.57	9.2	0.0	2.0	1	1	1	2	2	2	0	Amidinotransferase
Methyltransf_32	PF13679.6	gi|227826749|ref|YP_002828528.1|	-	0.17	11.8	0.0	0.33	10.9	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
MFS_1	PF07690.16	gi|227826750|ref|YP_002828529.1|	-	9.3e-11	41.2	17.1	9.3e-11	41.2	17.1	1.9	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Amidase	PF01425.21	gi|227826751|ref|YP_002828530.1|	-	4.4e-98	329.2	0.0	5.4e-98	328.9	0.0	1.0	1	0	0	1	1	1	1	Amidase
AhpC-TSA	PF00578.21	gi|227826752|ref|YP_002828531.1|	-	1.7e-32	112.0	0.0	3.5e-32	110.9	0.0	1.5	2	0	0	2	2	2	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|227826752|ref|YP_002828531.1|	-	2.8e-17	62.8	0.0	4.5e-17	62.1	0.0	1.3	1	1	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.9	gi|227826752|ref|YP_002828531.1|	-	1.2e-12	47.5	0.1	2e-12	46.7	0.1	1.4	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
AhpC-TSA_2	PF13911.6	gi|227826752|ref|YP_002828531.1|	-	0.18	12.0	0.0	0.22	11.7	0.0	1.3	1	0	0	1	1	1	0	AhpC/TSA	antioxidant	enzyme
Nitro_FeMo-Co	PF02579.17	gi|227826753|ref|YP_002828532.1|	-	3.9e-12	46.3	0.1	5.6e-12	45.8	0.1	1.2	1	0	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
DUF3311	PF11755.8	gi|227826755|ref|YP_002828534.1|	-	2.3e-11	43.5	6.7	2.8e-11	43.2	6.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
7tm_7	PF08395.12	gi|227826755|ref|YP_002828534.1|	-	0.0098	15.1	4.0	0.011	15.0	4.0	1.0	1	0	0	1	1	1	1	7tm	Chemosensory	receptor
DUF997	PF06196.12	gi|227826755|ref|YP_002828534.1|	-	0.026	14.5	6.2	0.032	14.2	6.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF997)
DctQ	PF04290.12	gi|227826755|ref|YP_002828534.1|	-	0.042	13.8	4.1	0.043	13.7	4.1	1.1	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DUF485	PF04341.12	gi|227826755|ref|YP_002828534.1|	-	0.25	11.3	6.8	0.26	11.3	6.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF485
FeoB_associated	PF12669.7	gi|227826755|ref|YP_002828534.1|	-	4.6	7.7	6.4	11	6.5	1.1	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
SSF	PF00474.17	gi|227826756|ref|YP_002828535.1|	-	1.3e-16	60.5	32.3	2.3e-16	59.7	32.3	1.4	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF2434	PF10361.9	gi|227826756|ref|YP_002828535.1|	-	0.019	14.0	1.7	0.041	12.9	1.7	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2434)
Amidohydro_2	PF04909.14	gi|227826757|ref|YP_002828536.1|	-	3.6e-46	158.3	0.0	4e-46	158.1	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase
DUF973	PF06157.11	gi|227826758|ref|YP_002828537.1|	-	9.1e-65	218.7	37.6	1.6e-64	217.9	37.6	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
HTH_11	PF08279.12	gi|227826759|ref|YP_002828538.1|	-	0.0029	17.5	0.5	0.0056	16.6	0.5	1.4	1	0	0	1	1	1	1	HTH	domain
DAO	PF01266.24	gi|227826760|ref|YP_002828539.1|	-	5.3e-12	46.0	0.0	6.4e-05	22.7	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|227826760|ref|YP_002828539.1|	-	2.1e-10	40.6	0.0	1.1e-09	38.3	0.0	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|227826760|ref|YP_002828539.1|	-	6.9e-09	35.3	0.5	0.00037	19.7	0.0	2.5	3	0	0	3	3	3	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227826760|ref|YP_002828539.1|	-	7.3e-09	35.3	0.1	6.9e-05	22.2	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|227826760|ref|YP_002828539.1|	-	9.1e-09	35.1	0.0	2.5e-08	33.6	0.0	1.6	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
Thi4	PF01946.17	gi|227826760|ref|YP_002828539.1|	-	3.1e-08	33.2	0.7	2.8e-06	26.7	0.0	2.5	2	0	0	2	2	2	1	Thi4	family
HI0933_like	PF03486.14	gi|227826760|ref|YP_002828539.1|	-	5.1e-08	32.0	0.4	0.00034	19.4	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox	PF00070.27	gi|227826760|ref|YP_002828539.1|	-	5.6e-08	33.2	0.8	0.014	15.9	0.1	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227826760|ref|YP_002828539.1|	-	5.4e-05	22.4	2.7	0.016	14.3	0.0	2.5	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|227826760|ref|YP_002828539.1|	-	0.00039	19.9	0.4	0.0042	16.5	0.0	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GDI	PF00996.18	gi|227826760|ref|YP_002828539.1|	-	0.0017	16.9	2.3	0.39	9.2	0.0	2.9	3	1	1	4	4	4	2	GDP	dissociation	inhibitor
FAD_binding_3	PF01494.19	gi|227826760|ref|YP_002828539.1|	-	0.0018	17.6	0.0	0.012	14.8	0.1	2.0	2	0	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|227826760|ref|YP_002828539.1|	-	0.048	12.7	0.0	0.33	10.0	0.0	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
2-Hacid_dh_C	PF02826.19	gi|227826760|ref|YP_002828539.1|	-	0.049	13.0	0.3	0.38	10.1	0.0	2.1	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_9	PF13454.6	gi|227826760|ref|YP_002828539.1|	-	0.05	13.6	0.1	6.3	6.8	0.0	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|227826760|ref|YP_002828539.1|	-	0.11	11.7	2.4	0.18	11.0	0.2	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF488	PF04343.13	gi|227826761|ref|YP_002828540.1|	-	3.4e-29	101.9	0.0	4.7e-29	101.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
DUF4974	PF16344.5	gi|227826761|ref|YP_002828540.1|	-	0.029	14.4	0.3	1.7	8.7	0.1	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4974)
Amidohydro_2	PF04909.14	gi|227826762|ref|YP_002828541.1|	-	1.5e-28	100.4	0.1	1.5e-28	100.4	0.1	1.3	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_1	PF01979.20	gi|227826762|ref|YP_002828541.1|	-	0.036	13.4	0.0	2.8	7.2	0.0	2.2	2	0	0	2	2	2	0	Amidohydrolase	family
CHAD	PF05235.14	gi|227826763|ref|YP_002828542.1|	-	1e-06	28.9	0.0	0.047	13.7	0.0	2.2	1	1	1	2	2	2	2	CHAD	domain
Thymidylate_kin	PF02223.17	gi|227826764|ref|YP_002828543.1|	-	1.1e-12	48.0	0.0	1.7e-12	47.4	0.0	1.3	1	1	0	1	1	1	1	Thymidylate	kinase
AAA_30	PF13604.6	gi|227826764|ref|YP_002828543.1|	-	0.043	13.5	0.1	0.061	13.0	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|227826764|ref|YP_002828543.1|	-	0.075	13.4	0.0	0.085	13.2	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.6	gi|227826764|ref|YP_002828543.1|	-	0.078	13.4	0.2	0.46	10.9	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|227826765|ref|YP_002828544.1|	-	4.5e-28	98.2	0.0	2.2e-27	95.9	0.0	1.8	1	1	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|227826765|ref|YP_002828544.1|	-	9.7e-06	25.6	0.2	1.6e-05	24.9	0.2	1.4	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_18	PF13238.6	gi|227826765|ref|YP_002828544.1|	-	0.00057	20.4	0.0	0.0012	19.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Hfx_Cass5	PF18287.1	gi|227826765|ref|YP_002828544.1|	-	0.07	13.3	0.1	0.19	11.9	0.1	1.7	1	0	0	1	1	1	0	Integron	Cassette	Protein	Hfx_Cass5
Ppx-GppA	PF02541.16	gi|227826766|ref|YP_002828545.1|	-	2.1e-38	132.4	0.5	3.3e-38	131.8	0.5	1.2	1	0	0	1	1	1	1	Ppx/GppA	phosphatase	family
TruB-C_2	PF09157.11	gi|227826766|ref|YP_002828545.1|	-	0.065	13.3	0.1	0.57	10.3	0.0	2.2	2	0	0	2	2	2	0	Pseudouridine	synthase	II	TruB,	C-terminal
His_Phos_1	PF00300.22	gi|227826767|ref|YP_002828546.1|	-	1.5e-13	50.9	0.0	3.5e-12	46.4	0.0	2.0	2	0	0	2	2	2	1	Histidine	phosphatase	superfamily	(branch	1)
ACT	PF01842.25	gi|227826767|ref|YP_002828546.1|	-	0.062	13.1	0.1	0.27	11.0	0.0	2.1	2	0	0	2	2	2	0	ACT	domain
TPP_enzyme_C	PF02775.21	gi|227826770|ref|YP_002828549.1|	-	3.2e-19	69.2	0.0	8.1e-19	67.9	0.0	1.6	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|227826770|ref|YP_002828549.1|	-	0.013	14.7	0.3	0.024	13.9	0.0	1.5	2	0	0	2	2	2	0	1-deoxy-D-xylulose-5-phosphate	synthase
E1_dh	PF00676.20	gi|227826770|ref|YP_002828549.1|	-	0.023	13.6	0.0	0.023	13.6	0.0	1.7	2	0	0	2	2	2	0	Dehydrogenase	E1	component
bZIP_1	PF00170.21	gi|227826770|ref|YP_002828549.1|	-	1.5	9.0	4.3	2.5	8.3	4.3	1.3	1	0	0	1	1	1	0	bZIP	transcription	factor
POR_N	PF01855.19	gi|227826771|ref|YP_002828550.1|	-	2.7e-70	236.7	1.4	3.6e-70	236.3	1.4	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|227826771|ref|YP_002828550.1|	-	5.9e-34	116.4	0.1	1.2e-33	115.4	0.1	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|227826771|ref|YP_002828550.1|	-	7.3e-05	22.7	0.0	0.00018	21.4	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Fer4	PF00037.27	gi|227826772|ref|YP_002828551.1|	-	4.4e-15	54.8	17.3	8.3e-08	31.7	5.4	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|227826772|ref|YP_002828551.1|	-	4.7e-12	45.4	15.0	7.4e-07	29.0	3.3	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227826772|ref|YP_002828551.1|	-	4.6e-11	43.1	21.9	6.7e-09	36.2	11.3	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227826772|ref|YP_002828551.1|	-	1.2e-10	41.3	8.9	1.6e-10	40.9	8.9	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227826772|ref|YP_002828551.1|	-	7.3e-10	38.3	13.7	5.2e-05	23.1	3.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|227826772|ref|YP_002828551.1|	-	3e-09	36.8	24.1	9.6e-07	28.8	13.3	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227826772|ref|YP_002828551.1|	-	2.9e-08	34.5	9.2	0.00057	20.8	2.6	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|227826772|ref|YP_002828551.1|	-	6.6e-08	32.6	20.9	7.7e-06	26.0	12.1	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227826772|ref|YP_002828551.1|	-	4e-07	30.0	11.3	0.00076	19.8	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227826772|ref|YP_002828551.1|	-	1.8e-06	28.3	4.9	0.017	15.5	0.4	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227826772|ref|YP_002828551.1|	-	8.8e-05	23.2	8.6	0.015	16.0	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|227826772|ref|YP_002828551.1|	-	0.0002	21.9	12.3	0.0083	16.7	2.0	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|227826772|ref|YP_002828551.1|	-	0.00082	20.1	19.4	0.1	13.6	8.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|227826772|ref|YP_002828551.1|	-	0.0018	18.8	11.7	0.11	13.0	1.8	2.1	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|227826772|ref|YP_002828551.1|	-	0.035	15.0	0.8	0.035	15.0	0.8	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|227826772|ref|YP_002828551.1|	-	0.049	13.8	10.9	3.3	7.9	2.5	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|227826773|ref|YP_002828552.1|	-	6.4e-36	124.1	0.0	7.7e-36	123.8	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Phage_TAC_9	PF10876.8	gi|227826773|ref|YP_002828552.1|	-	0.15	12.1	0.0	0.21	11.7	0.0	1.2	1	0	0	1	1	1	0	Phage	tail	assemb.y	chaperone	protein,	TAC
Ald_Xan_dh_C	PF01315.22	gi|227826774|ref|YP_002828553.1|	-	0.0002	21.7	0.0	0.00022	21.5	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
FliD_C	PF07195.12	gi|227826775|ref|YP_002828554.1|	-	8e-05	22.2	2.3	8e-05	22.2	2.3	1.7	1	1	1	2	2	2	1	Flagellar	hook-associated	protein	2	C-terminus
FH2	PF02181.23	gi|227826775|ref|YP_002828554.1|	-	0.00053	19.2	5.0	0.00067	18.9	5.0	1.1	1	0	0	1	1	1	1	Formin	Homology	2	Domain
DUF19	PF01579.18	gi|227826775|ref|YP_002828554.1|	-	0.0022	17.8	0.9	0.0025	17.6	0.9	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF19)
DUF948	PF06103.11	gi|227826775|ref|YP_002828554.1|	-	0.003	17.8	1.8	0.003	17.8	1.8	1.8	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
KxDL	PF10241.9	gi|227826775|ref|YP_002828554.1|	-	0.0082	16.4	5.6	0.55	10.5	2.2	2.4	2	1	0	2	2	2	1	Uncharacterized	conserved	protein
OmpH	PF03938.14	gi|227826775|ref|YP_002828554.1|	-	0.0089	16.4	2.7	0.017	15.5	2.7	1.5	1	0	0	1	1	1	1	Outer	membrane	protein	(OmpH-like)
HSBP1	PF06825.12	gi|227826775|ref|YP_002828554.1|	-	0.01	15.7	0.8	0.026	14.4	0.8	1.6	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
RBD-FIP	PF09457.10	gi|227826775|ref|YP_002828554.1|	-	0.015	15.2	4.0	0.066	13.1	4.0	2.0	1	0	0	1	1	1	0	FIP	domain
DUF1664	PF07889.12	gi|227826775|ref|YP_002828554.1|	-	0.016	15.2	2.2	0.016	15.2	2.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Vfa1	PF08432.10	gi|227826775|ref|YP_002828554.1|	-	0.019	15.3	3.2	0.028	14.8	3.2	1.3	1	0	0	1	1	1	0	AAA-ATPase	Vps4-associated	protein	1
Baculo_PEP_C	PF04513.12	gi|227826775|ref|YP_002828554.1|	-	0.024	14.7	0.7	0.024	14.7	0.7	2.0	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Prefoldin	PF02996.17	gi|227826775|ref|YP_002828554.1|	-	0.031	14.2	6.4	0.031	14.2	6.4	1.7	2	0	0	2	2	1	0	Prefoldin	subunit
Phasin	PF05597.11	gi|227826775|ref|YP_002828554.1|	-	0.032	14.2	2.5	0.045	13.8	2.5	1.3	1	0	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF1351	PF07083.11	gi|227826775|ref|YP_002828554.1|	-	0.038	13.8	9.7	0.05	13.4	9.7	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1351)
DUF16	PF01519.16	gi|227826775|ref|YP_002828554.1|	-	0.042	14.3	9.8	0.11	13.0	9.8	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
DUF2120	PF09893.9	gi|227826775|ref|YP_002828554.1|	-	0.043	13.9	8.8	0.14	12.3	5.5	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
Prefoldin_2	PF01920.20	gi|227826775|ref|YP_002828554.1|	-	0.051	13.5	14.1	0.084	12.8	14.1	1.6	1	1	0	1	1	1	0	Prefoldin	subunit
AAA_32	PF13654.6	gi|227826775|ref|YP_002828554.1|	-	0.061	12.1	9.4	0.13	11.1	6.0	1.8	1	1	1	2	2	2	0	AAA	domain
HlyE	PF06109.13	gi|227826775|ref|YP_002828554.1|	-	0.093	12.0	4.8	0.22	10.8	4.8	1.6	1	1	0	1	1	1	0	Haemolysin	E	(HlyE)
DHR10	PF18595.1	gi|227826775|ref|YP_002828554.1|	-	0.096	12.7	11.4	0.044	13.9	8.7	1.7	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
YbaB_DNA_bd	PF02575.16	gi|227826775|ref|YP_002828554.1|	-	0.14	12.4	3.4	0.18	12.0	0.6	2.3	1	1	1	2	2	2	0	YbaB/EbfC	DNA-binding	family
Syntaxin-6_N	PF09177.11	gi|227826775|ref|YP_002828554.1|	-	0.18	12.4	7.6	0.17	12.5	4.2	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Exonuc_VII_L	PF02601.15	gi|227826775|ref|YP_002828554.1|	-	0.23	11.0	2.2	0.27	10.8	2.2	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
DUF4407	PF14362.6	gi|227826775|ref|YP_002828554.1|	-	0.24	10.7	3.5	0.3	10.4	3.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
FAM76	PF16046.5	gi|227826775|ref|YP_002828554.1|	-	0.25	10.7	7.7	0.29	10.5	7.7	1.2	1	0	0	1	1	1	0	FAM76	protein
Syntaxin_2	PF14523.6	gi|227826775|ref|YP_002828554.1|	-	0.25	11.7	9.5	1.7	9.1	5.0	2.7	1	1	1	2	2	2	0	Syntaxin-like	protein
FlxA	PF14282.6	gi|227826775|ref|YP_002828554.1|	-	0.27	11.3	6.5	11	6.1	0.0	2.2	1	1	0	2	2	2	0	FlxA-like	protein
CdvA	PF18822.1	gi|227826775|ref|YP_002828554.1|	-	0.33	10.8	12.7	0.17	11.7	10.0	1.9	1	1	0	2	2	2	0	CdvA-like	coiled-coil	domain
T_Ag_DNA_bind	PF02217.16	gi|227826775|ref|YP_002828554.1|	-	0.35	11.5	3.4	0.43	11.2	0.2	2.5	1	1	1	2	2	2	0	Origin	of	replication	binding	protein
Bacillus_HBL	PF05791.11	gi|227826775|ref|YP_002828554.1|	-	0.4	10.5	8.9	3.2	7.5	4.2	2.1	1	1	0	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
PHM7_cyt	PF14703.6	gi|227826775|ref|YP_002828554.1|	-	0.44	10.8	6.4	0.99	9.6	6.3	1.5	1	1	0	1	1	1	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
DUF848	PF05852.11	gi|227826775|ref|YP_002828554.1|	-	0.45	10.6	8.3	0.65	10.1	8.2	1.3	1	1	0	1	1	1	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Ntox28	PF15605.6	gi|227826775|ref|YP_002828554.1|	-	0.5	10.6	4.7	0.33	11.2	2.9	1.6	2	0	0	2	2	1	0	Bacterial	toxin	28
NYD-SP28	PF14772.6	gi|227826775|ref|YP_002828554.1|	-	0.57	10.3	13.1	0.78	9.8	12.9	1.4	1	1	0	1	1	1	0	Sperm	tail
Phage_HK97_TLTM	PF06120.11	gi|227826775|ref|YP_002828554.1|	-	0.67	9.1	7.8	0.4	9.8	5.7	1.6	1	1	1	2	2	2	0	Tail	length	tape	measure	protein
MutS_IV	PF05190.18	gi|227826775|ref|YP_002828554.1|	-	0.86	10.0	9.0	0.21	11.9	4.1	2.4	1	1	1	3	3	2	0	MutS	family	domain	IV
MtrG	PF04210.13	gi|227826775|ref|YP_002828554.1|	-	1.2	9.0	6.8	4.8	7.1	0.5	2.5	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
AAA_23	PF13476.6	gi|227826775|ref|YP_002828554.1|	-	1.2	9.6	12.4	1.5	9.2	12.4	1.1	1	0	0	1	1	1	0	AAA	domain
TMPIT	PF07851.13	gi|227826775|ref|YP_002828554.1|	-	1.5	8.0	8.3	0.76	9.0	6.0	1.6	1	1	1	2	2	2	0	TMPIT-like	protein
ACCA	PF03255.14	gi|227826775|ref|YP_002828554.1|	-	1.6	8.6	6.7	0.91	9.4	3.0	1.8	1	1	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
Med21	PF11221.8	gi|227826775|ref|YP_002828554.1|	-	2.6	8.3	11.4	1	9.6	8.2	1.9	2	1	0	2	2	2	0	Subunit	21	of	Mediator	complex
DUF5093	PF17011.5	gi|227826775|ref|YP_002828554.1|	-	2.8	8.2	9.5	2	8.7	6.5	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5093)
CorA	PF01544.18	gi|227826775|ref|YP_002828554.1|	-	3	7.1	7.1	4.3	6.5	4.5	2.2	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Med4	PF10018.9	gi|227826775|ref|YP_002828554.1|	-	6	6.5	9.5	14	5.3	9.4	1.6	1	1	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
FapA	PF03961.13	gi|227826775|ref|YP_002828554.1|	-	6.8	5.2	12.1	33	2.9	12.1	1.8	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
FAD_binding_4	PF01565.23	gi|227826777|ref|YP_002828556.1|	-	3.8e-44	149.8	0.0	1.1e-43	148.3	0.0	1.8	2	0	0	2	2	2	1	FAD	binding	domain
FAD-oxidase_C	PF02913.19	gi|227826777|ref|YP_002828556.1|	-	3.7e-43	148.0	0.1	5.8e-43	147.3	0.1	1.3	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
Pox_F11	PF04943.12	gi|227826777|ref|YP_002828556.1|	-	0.13	11.3	0.8	0.2	10.7	0.8	1.2	1	0	0	1	1	1	0	Poxvirus	F11	protein
PIN	PF01850.21	gi|227826778|ref|YP_002828557.1|	-	1.2e-11	45.2	0.3	1.4e-11	45.0	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|227826779|ref|YP_002828558.1|	-	0.00067	19.5	0.5	0.0015	18.4	0.5	1.7	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
MraZ	PF02381.18	gi|227826779|ref|YP_002828558.1|	-	0.0079	16.2	0.0	0.01	15.8	0.0	1.3	1	0	0	1	1	1	1	MraZ	protein,	putative	antitoxin-like
Transposase_20	PF02371.16	gi|227826780|ref|YP_002828559.1|	-	5e-24	84.4	0.0	9.4e-24	83.5	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|227826780|ref|YP_002828559.1|	-	5.7e-08	32.8	0.0	1.6e-07	31.3	0.0	1.8	1	1	0	1	1	1	1	Transposase
XTBD	PF11952.8	gi|227826780|ref|YP_002828559.1|	-	0.091	12.5	0.3	0.25	11.1	0.1	1.8	2	0	0	2	2	2	0	XRN-Two	Binding	Domain,	XTBD
DDE_Tnp_IS240	PF13610.6	gi|227826781|ref|YP_002828560.1|	-	0.0074	16.5	0.4	0.018	15.3	0.3	1.6	2	0	0	2	2	2	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227826781|ref|YP_002828560.1|	-	0.049	13.1	0.1	0.07	12.6	0.1	1.2	1	0	0	1	1	1	0	Transposase	IS66	family
Pirin	PF02678.16	gi|227826782|ref|YP_002828561.1|	-	4.5e-37	126.3	0.0	6.3e-36	122.6	0.0	2.1	2	0	0	2	2	2	1	Pirin
Pirin_C	PF05726.13	gi|227826782|ref|YP_002828561.1|	-	6.4e-26	90.7	0.0	2.2e-25	89.0	0.0	1.8	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
MFS_1	PF07690.16	gi|227826783|ref|YP_002828562.1|	-	8.9e-26	90.6	51.0	1.2e-16	60.6	29.7	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227826783|ref|YP_002828562.1|	-	1.1e-21	77.3	35.1	9.2e-19	67.6	12.4	2.3	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
SpoV	PF08183.11	gi|227826783|ref|YP_002828562.1|	-	0.08	12.9	1.5	2.1	8.3	0.2	2.8	2	0	0	2	2	2	0	Stage	V	sporulation	protein	family
DUF5337	PF17272.2	gi|227826783|ref|YP_002828562.1|	-	0.58	10.0	4.2	4.7	7.1	0.9	3.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5337)
ECH_1	PF00378.20	gi|227826784|ref|YP_002828563.1|	-	3.4e-46	157.6	0.0	3.9e-46	157.4	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|227826784|ref|YP_002828563.1|	-	4.9e-37	128.2	0.0	5.6e-37	128.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
Glyco_trans_4_5	PF16994.5	gi|227826784|ref|YP_002828563.1|	-	0.015	14.9	0.4	0.085	12.5	0.2	2.0	2	0	0	2	2	2	0	Glycosyl-transferase	family	4
DUF5051	PF16473.5	gi|227826784|ref|YP_002828563.1|	-	0.13	12.2	0.0	0.22	11.5	0.0	1.3	1	0	0	1	1	1	0	3'	exoribonuclease,	RNase	T-like
ADH_N	PF08240.12	gi|227826785|ref|YP_002828564.1|	-	3.3e-34	117.1	0.2	5.6e-34	116.3	0.2	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227826785|ref|YP_002828564.1|	-	6.1e-26	90.9	0.5	1.2e-25	89.9	0.5	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227826785|ref|YP_002828564.1|	-	1.3e-15	58.6	0.0	2.9e-15	57.5	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Methyltransf_31	PF13847.6	gi|227826785|ref|YP_002828564.1|	-	5e-05	23.1	0.0	9.3e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227826785|ref|YP_002828564.1|	-	0.00033	21.3	0.1	0.00059	20.5	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227826785|ref|YP_002828564.1|	-	0.011	16.5	0.0	0.018	15.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
TrkA_N	PF02254.18	gi|227826785|ref|YP_002828564.1|	-	0.011	15.9	0.1	0.025	14.8	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
MTS	PF05175.14	gi|227826785|ref|YP_002828564.1|	-	0.014	15.0	0.1	0.027	14.0	0.1	1.5	1	0	0	1	1	1	0	Methyltransferase	small	domain
DapB_N	PF01113.20	gi|227826785|ref|YP_002828564.1|	-	0.025	14.7	0.6	0.051	13.7	0.6	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Methyltransf_11	PF08241.12	gi|227826785|ref|YP_002828564.1|	-	0.037	14.7	0.1	0.077	13.7	0.1	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|227826785|ref|YP_002828564.1|	-	0.071	12.6	0.2	0.13	11.7	0.2	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltransf_32	PF13679.6	gi|227826785|ref|YP_002828564.1|	-	0.071	13.1	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
DOT1	PF08123.13	gi|227826785|ref|YP_002828564.1|	-	0.21	11.1	0.1	0.35	10.4	0.1	1.2	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
PEPCK_GTP	PF00821.18	gi|227826786|ref|YP_002828565.1|	-	4.4e-104	348.2	0.0	5.3e-104	347.9	0.0	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	C-terminal	P-loop	domain
PEPCK_N	PF17297.2	gi|227826786|ref|YP_002828565.1|	-	7.1e-61	205.6	0.0	1e-60	205.0	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	N-terminal	domain
DUF2737	PF10930.8	gi|227826786|ref|YP_002828565.1|	-	3.8	7.2	6.1	0.47	10.1	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2737)
Glycos_transf_1	PF00534.20	gi|227826787|ref|YP_002828566.1|	-	2.6e-13	49.9	0.0	4.8e-13	49.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Phosphorylase	PF00343.20	gi|227826787|ref|YP_002828566.1|	-	2.5e-08	32.7	0.0	2.4e-07	29.4	0.0	1.9	1	1	0	2	2	2	1	Carbohydrate	phosphorylase
Glyco_trans_1_4	PF13692.6	gi|227826787|ref|YP_002828566.1|	-	4.5e-07	30.4	0.0	1.1e-06	29.1	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Aldedh	PF00171.22	gi|227826789|ref|YP_002828568.1|	-	8.2e-132	440.0	0.0	1.2e-131	439.4	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|227826789|ref|YP_002828568.1|	-	3.2e-05	23.1	0.0	5.1e-05	22.5	0.0	1.4	1	1	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
PIN	PF01850.21	gi|227826790|ref|YP_002828569.1|	-	1.3e-07	32.2	1.0	1.5e-07	31.9	1.0	1.1	1	0	0	1	1	1	1	PIN	domain
Macro	PF01661.21	gi|227826793|ref|YP_002828572.1|	-	1.8e-35	121.5	0.1	3.3e-35	120.7	0.0	1.4	1	1	1	2	2	2	1	Macro	domain
Macro_2	PF14519.6	gi|227826793|ref|YP_002828572.1|	-	0.034	13.5	1.3	0.47	9.7	0.1	2.1	1	1	0	2	2	2	0	Macro-like	domain
Glycos_transf_1	PF00534.20	gi|227826794|ref|YP_002828573.1|	-	1e-19	70.7	0.0	2.3e-19	69.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826794|ref|YP_002828573.1|	-	5.1e-13	49.6	0.0	9e-13	48.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227826794|ref|YP_002828573.1|	-	0.0028	18.0	0.0	0.013	15.9	0.0	2.1	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
DUF4747	PF15931.5	gi|227826794|ref|YP_002828573.1|	-	0.14	11.8	0.5	0.35	10.5	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4747)
DUF4974	PF16344.5	gi|227826794|ref|YP_002828573.1|	-	0.84	9.7	4.1	3.2	7.8	0.3	3.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4974)
PIG-L	PF02585.17	gi|227826795|ref|YP_002828574.1|	-	4.8e-27	95.2	0.0	6.1e-27	94.8	0.0	1.1	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
PARG_cat	PF05028.14	gi|227826795|ref|YP_002828574.1|	-	0.16	11.3	0.0	0.2	10.9	0.0	1.1	1	0	0	1	1	1	0	Poly	(ADP-ribose)	glycohydrolase	(PARG)
YPEB	PF14620.6	gi|227826796|ref|YP_002828575.1|	-	0.0034	16.8	1.3	0.005	16.2	1.3	1.2	1	0	0	1	1	1	1	YpeB	sporulation
Mer2	PF09074.10	gi|227826796|ref|YP_002828575.1|	-	0.02	14.7	1.5	0.022	14.6	1.5	1.2	1	0	0	1	1	1	0	Mer2
CAF-1_p150	PF11600.8	gi|227826796|ref|YP_002828575.1|	-	0.028	14.1	7.2	0.034	13.8	7.2	1.2	1	0	0	1	1	1	0	Chromatin	assembly	factor	1	complex	p150	subunit,	N-terminal
HLH	PF00010.26	gi|227826796|ref|YP_002828575.1|	-	0.052	13.5	0.2	0.23	11.5	0.1	2.1	2	0	0	2	2	2	0	Helix-loop-helix	DNA-binding	domain
HEPN_AbiU2	PF18734.1	gi|227826796|ref|YP_002828575.1|	-	0.21	11.1	7.5	0.55	9.7	6.8	1.8	1	1	1	2	2	2	0	AbiU2
Fib_alpha	PF08702.10	gi|227826796|ref|YP_002828575.1|	-	0.56	10.4	3.8	0.78	9.9	3.8	1.2	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
DUF4065	PF13274.6	gi|227826796|ref|YP_002828575.1|	-	2.2	9.2	8.5	3.8	8.4	7.6	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4065)
SQS_PSY	PF00494.19	gi|227826799|ref|YP_002828578.1|	-	6.8e-46	156.9	0.0	7.9e-46	156.7	0.0	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
FA_hydroxylase	PF04116.13	gi|227826800|ref|YP_002828579.1|	-	4.6e-12	46.4	10.1	5.8e-12	46.1	10.1	1.1	1	0	0	1	1	1	1	Fatty	acid	hydroxylase	superfamily
Halogen_Hydrol	PF10112.9	gi|227826800|ref|YP_002828579.1|	-	5.1	7.1	7.0	1.2	9.1	2.7	1.8	1	1	1	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
Amino_oxidase	PF01593.24	gi|227826801|ref|YP_002828580.1|	-	4.4e-18	65.8	0.0	1.6e-13	50.8	0.0	2.4	2	1	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|227826801|ref|YP_002828580.1|	-	7.2e-12	45.4	0.0	1.4e-11	44.4	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|227826801|ref|YP_002828580.1|	-	9.3e-09	35.3	0.0	2.7e-07	30.5	0.0	2.4	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|227826801|ref|YP_002828580.1|	-	5.9e-05	22.4	0.6	0.049	12.9	0.1	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227826801|ref|YP_002828580.1|	-	0.00012	22.6	1.8	0.095	13.3	0.1	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|227826801|ref|YP_002828580.1|	-	0.00038	19.7	0.0	0.034	13.2	0.0	2.1	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|227826801|ref|YP_002828580.1|	-	0.0012	17.7	0.2	0.065	11.9	0.1	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|227826801|ref|YP_002828580.1|	-	0.0057	16.1	0.0	0.0091	15.4	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227826801|ref|YP_002828580.1|	-	0.014	14.7	0.5	0.086	12.1	0.1	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|227826801|ref|YP_002828580.1|	-	0.19	10.9	0.1	0.34	10.1	0.1	1.4	1	0	0	1	1	1	0	FAD	binding	domain
GRAS	PF03514.14	gi|227826801|ref|YP_002828580.1|	-	0.23	10.4	0.0	0.35	9.8	0.0	1.2	1	0	0	1	1	1	0	GRAS	domain	family
DDE_3	PF13358.6	gi|227826802|ref|YP_002828581.1|	-	7.5e-21	74.4	0.0	3.8e-20	72.1	0.0	2.1	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_29	PF13551.6	gi|227826802|ref|YP_002828581.1|	-	3.1e-16	59.1	0.0	5.6e-16	58.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|227826802|ref|YP_002828581.1|	-	7.7e-14	51.0	0.0	3.2e-13	49.1	0.0	2.1	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|227826802|ref|YP_002828581.1|	-	1.4e-11	44.3	0.1	3.6e-11	43.0	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|227826802|ref|YP_002828581.1|	-	6e-08	32.6	0.1	1.7e-07	31.2	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
Terminase_5	PF06056.12	gi|227826802|ref|YP_002828581.1|	-	4.7e-07	29.6	0.1	1e-06	28.5	0.1	1.6	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_17	PF12728.7	gi|227826802|ref|YP_002828581.1|	-	1.5e-05	25.1	0.1	4.4e-05	23.6	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|227826802|ref|YP_002828581.1|	-	2.4e-05	24.2	0.0	6e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Sigma70_r4_2	PF08281.12	gi|227826802|ref|YP_002828581.1|	-	2.8e-05	23.7	0.0	8.2e-05	22.2	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|227826802|ref|YP_002828581.1|	-	4.7e-05	23.1	0.2	0.00016	21.3	0.0	2.0	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.20	gi|227826802|ref|YP_002828581.1|	-	0.00011	22.4	0.4	0.00031	21.0	0.4	1.8	1	0	0	1	1	1	1	Transposase
HTH_32	PF13565.6	gi|227826802|ref|YP_002828581.1|	-	0.00018	22.0	0.4	0.00088	19.8	0.1	2.4	2	1	0	2	2	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|227826802|ref|YP_002828581.1|	-	0.00047	20.0	0.0	0.0013	18.5	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|227826802|ref|YP_002828581.1|	-	0.0012	18.6	0.0	0.0025	17.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_40	PF14493.6	gi|227826802|ref|YP_002828581.1|	-	0.0015	18.9	1.4	0.0034	17.8	1.4	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_1_2	PF13022.6	gi|227826802|ref|YP_002828581.1|	-	0.0037	17.4	0.7	0.041	14.0	0.1	2.7	3	0	0	3	3	3	1	Helix-turn-helix	of	insertion	element	transposase
HTH_Tnp_IS630	PF01710.16	gi|227826802|ref|YP_002828581.1|	-	0.009	16.0	6.9	0.016	15.2	6.9	1.4	1	0	0	1	1	1	1	Transposase
Fe_dep_repress	PF01325.19	gi|227826802|ref|YP_002828581.1|	-	0.013	15.6	0.0	0.031	14.5	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|227826802|ref|YP_002828581.1|	-	0.019	14.9	0.1	0.077	13.0	0.0	2.1	2	0	0	2	2	1	0	HTH	domain
MarR_2	PF12802.7	gi|227826802|ref|YP_002828581.1|	-	0.022	14.6	0.0	0.046	13.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.6	gi|227826802|ref|YP_002828581.1|	-	0.023	14.6	1.2	0.034	14.1	0.0	2.0	2	0	0	2	2	1	0	Helix-turn-helix	domain
Sigma54_DBD	PF04552.13	gi|227826802|ref|YP_002828581.1|	-	0.024	14.3	0.3	0.051	13.3	0.0	1.6	2	0	0	2	2	1	0	Sigma-54,	DNA	binding	domain
LZ_Tnp_IS481	PF13011.6	gi|227826802|ref|YP_002828581.1|	-	0.03	14.9	0.0	0.065	13.8	0.0	1.5	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_ISL3	PF13542.6	gi|227826802|ref|YP_002828581.1|	-	0.032	13.7	0.0	0.057	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF1492	PF07374.11	gi|227826802|ref|YP_002828581.1|	-	0.035	14.2	0.0	0.095	12.9	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1492)
HTH_Tnp_4	PF13613.6	gi|227826802|ref|YP_002828581.1|	-	0.037	13.8	0.0	0.11	12.3	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
TnsD	PF15978.5	gi|227826802|ref|YP_002828581.1|	-	0.042	12.8	3.6	0.058	12.4	3.6	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
MerR_1	PF13411.6	gi|227826802|ref|YP_002828581.1|	-	0.046	13.8	0.1	0.14	12.3	0.1	1.8	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
DUF4817	PF16087.5	gi|227826802|ref|YP_002828581.1|	-	0.062	13.1	0.4	0.22	11.3	0.1	2.1	2	0	0	2	2	1	0	Helix-turn-helix	domain	(DUF4817)
HTH_3	PF01381.22	gi|227826802|ref|YP_002828581.1|	-	0.064	13.3	0.0	0.16	12.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix
HTH_20	PF12840.7	gi|227826802|ref|YP_002828581.1|	-	0.13	12.4	0.0	0.25	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4909	PF16253.5	gi|227826802|ref|YP_002828581.1|	-	3.7	7.4	5.5	2.9	7.7	0.3	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4909)
ATPase_2	PF01637.18	gi|227826803|ref|YP_002828582.1|	-	2.7e-21	76.5	0.4	2.7e-21	76.5	0.4	1.9	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|227826803|ref|YP_002828582.1|	-	6.2e-12	45.7	1.7	2.4e-09	37.3	0.1	3.3	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|227826803|ref|YP_002828582.1|	-	4.6e-09	36.7	0.0	1.6e-08	34.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|227826803|ref|YP_002828582.1|	-	1.3e-05	25.6	0.0	6.2e-05	23.5	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227826803|ref|YP_002828582.1|	-	0.0051	17.2	0.0	0.029	14.8	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4423	PF14394.6	gi|227826803|ref|YP_002828582.1|	-	0.069	12.9	0.3	0.11	12.1	0.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
ApbA_C	PF08546.11	gi|227826803|ref|YP_002828582.1|	-	0.14	12.4	0.0	0.25	11.5	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
HTH_45	PF14947.6	gi|227826803|ref|YP_002828582.1|	-	0.16	12.0	1.9	2.4	8.2	0.1	3.4	4	0	0	4	4	4	0	Winged	helix-turn-helix
ABC_tran	PF00005.27	gi|227826805|ref|YP_002828584.1|	-	1.6e-28	100.0	0.0	2.2e-28	99.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227826805|ref|YP_002828584.1|	-	8.1e-20	71.1	0.0	1.4e-19	70.4	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|227826805|ref|YP_002828584.1|	-	0.0029	17.1	0.2	0.012	15.1	0.2	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227826805|ref|YP_002828584.1|	-	0.013	15.2	0.3	0.027	14.2	0.3	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|227826805|ref|YP_002828584.1|	-	0.017	15.4	0.5	0.077	13.3	0.5	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_21	PF13304.6	gi|227826805|ref|YP_002828584.1|	-	0.021	14.7	0.2	4	7.2	0.0	2.2	1	1	1	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
ATPase	PF06745.13	gi|227826805|ref|YP_002828584.1|	-	0.042	13.2	0.1	0.077	12.3	0.1	1.4	1	0	0	1	1	1	0	KaiC
T2SSE	PF00437.20	gi|227826805|ref|YP_002828584.1|	-	0.057	12.5	0.1	0.088	11.9	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NB-ARC	PF00931.22	gi|227826805|ref|YP_002828584.1|	-	0.081	12.1	0.3	0.17	11.0	0.3	1.5	1	0	0	1	1	1	0	NB-ARC	domain
AAA_15	PF13175.6	gi|227826805|ref|YP_002828584.1|	-	0.088	12.5	1.2	6.9	6.3	0.1	2.2	2	0	0	2	2	2	0	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|227826806|ref|YP_002828585.1|	-	2.1e-25	89.8	0.0	3e-25	89.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227826806|ref|YP_002828585.1|	-	3.9e-18	65.7	0.0	6.2e-18	65.1	0.0	1.3	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227826806|ref|YP_002828585.1|	-	1.2e-08	35.2	3.7	9.4e-07	28.9	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227826806|ref|YP_002828585.1|	-	1.2e-06	28.1	0.2	0.00026	20.5	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
TniB	PF05621.11	gi|227826806|ref|YP_002828585.1|	-	0.00033	20.1	1.4	0.0011	18.4	0.3	2.1	2	1	1	3	3	3	1	Bacterial	TniB	protein
AAA_29	PF13555.6	gi|227826806|ref|YP_002828585.1|	-	0.0044	16.7	0.0	0.0081	15.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
PRK	PF00485.18	gi|227826806|ref|YP_002828585.1|	-	0.013	15.2	0.1	0.021	14.5	0.1	1.6	1	1	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_18	PF13238.6	gi|227826806|ref|YP_002828585.1|	-	0.04	14.5	0.4	0.2	12.2	0.4	2.1	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|227826806|ref|YP_002828585.1|	-	0.14	12.1	0.0	0.26	11.2	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_22	PF13401.6	gi|227826806|ref|YP_002828585.1|	-	0.16	12.2	0.6	9.6	6.5	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.22	gi|227826807|ref|YP_002828586.1|	-	1.1e-12	48.1	19.7	1.1e-12	48.1	19.7	2.5	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|227826807|ref|YP_002828586.1|	-	0.00031	20.6	0.3	0.002	18.1	0.3	2.4	1	0	0	1	1	1	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Sigma_reg_N	PF13800.6	gi|227826807|ref|YP_002828586.1|	-	0.093	13.0	0.3	0.093	13.0	0.3	2.6	3	0	0	3	3	3	0	Sigma	factor	regulator	N-terminal
BPD_transp_1	PF00528.22	gi|227826808|ref|YP_002828587.1|	-	2.2e-36	125.4	13.4	2.2e-36	125.4	13.4	2.9	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|227826809|ref|YP_002828588.1|	-	5.3e-21	75.0	6.2	1.1e-16	60.8	0.9	3.3	3	0	0	3	3	3	3	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
MG2	PF01835.19	gi|227826809|ref|YP_002828588.1|	-	0.11	12.9	0.0	0.32	11.5	0.0	1.8	1	0	0	1	1	1	0	MG2	domain
DUF1285	PF06938.11	gi|227826809|ref|YP_002828588.1|	-	0.19	11.8	0.0	0.44	10.6	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1285)
Stevor	PF17410.2	gi|227826809|ref|YP_002828588.1|	-	0.57	9.7	9.6	1	8.8	9.6	1.4	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
RIFIN	PF02009.16	gi|227826809|ref|YP_002828588.1|	-	2.4	8.0	7.5	4.6	7.0	7.5	1.4	1	0	0	1	1	1	0	Rifin
TMEM154	PF15102.6	gi|227826809|ref|YP_002828588.1|	-	9.3	6.2	12.7	17	5.3	12.7	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
DUF871	PF05913.11	gi|227826810|ref|YP_002828589.1|	-	2.6e-54	184.8	0.1	3.5e-54	184.4	0.1	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF871)
YdaT_toxin	PF06254.11	gi|227826811|ref|YP_002828590.1|	-	0.034	14.7	0.0	0.054	14.1	0.0	1.3	1	0	0	1	1	1	0	Putative	bacterial	toxin	ydaT
tRNA_SAD	PF07973.14	gi|227826811|ref|YP_002828590.1|	-	0.036	14.1	0.0	0.064	13.4	0.0	1.4	1	0	0	1	1	1	0	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
Synapsin_N	PF10581.9	gi|227826812|ref|YP_002828591.1|	-	0.077	13.0	0.0	0.22	11.5	0.0	1.7	1	0	0	1	1	1	0	Synapsin	N-terminal
Flavodoxin_3	PF12641.7	gi|227826812|ref|YP_002828591.1|	-	0.15	11.8	0.0	0.44	10.2	0.0	1.7	1	1	0	1	1	1	0	Flavodoxin	domain
SIS	PF01380.22	gi|227826814|ref|YP_002828593.1|	-	3.8e-37	127.1	0.9	2.9e-25	88.6	0.4	2.4	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|227826814|ref|YP_002828593.1|	-	3.7e-15	56.3	0.0	6.6e-15	55.5	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|227826814|ref|YP_002828593.1|	-	1.6e-12	47.4	0.0	3.5e-12	46.3	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|227826814|ref|YP_002828593.1|	-	0.00011	22.2	3.1	0.0065	16.5	0.7	3.5	2	2	2	4	4	4	1	SIS	domain
GATase_4	PF13230.6	gi|227826814|ref|YP_002828593.1|	-	0.083	11.8	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
ABC_tran	PF00005.27	gi|227826815|ref|YP_002828594.1|	-	2.4e-24	86.4	0.0	4.3e-24	85.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227826815|ref|YP_002828594.1|	-	7e-13	49.1	3.5	1.1e-06	28.7	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|227826815|ref|YP_002828594.1|	-	6.9e-05	22.7	4.5	0.027	14.2	0.2	2.7	1	1	2	3	3	3	2	AAA	ATPase	domain
MeaB	PF03308.16	gi|227826815|ref|YP_002828594.1|	-	0.00031	19.8	0.0	0.00046	19.3	0.0	1.3	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SRP54	PF00448.22	gi|227826815|ref|YP_002828594.1|	-	0.00061	19.5	0.1	0.0015	18.2	0.1	1.6	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|227826815|ref|YP_002828594.1|	-	0.004	17.4	0.0	0.0072	16.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|227826815|ref|YP_002828594.1|	-	0.0088	15.8	0.1	0.021	14.6	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|227826815|ref|YP_002828594.1|	-	0.021	15.0	0.0	0.1	12.7	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|227826815|ref|YP_002828594.1|	-	0.11	12.3	0.4	0.2	11.4	0.4	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Thymidylate_kin	PF02223.17	gi|227826815|ref|YP_002828594.1|	-	0.12	12.0	0.0	0.38	10.4	0.0	1.9	2	0	0	2	2	2	0	Thymidylate	kinase
CbiA	PF01656.23	gi|227826815|ref|YP_002828594.1|	-	0.14	12.2	0.1	0.24	11.5	0.1	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SMC_N	PF02463.19	gi|227826815|ref|YP_002828594.1|	-	0.19	11.1	1.2	14	5.1	0.1	2.3	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|227826815|ref|YP_002828594.1|	-	0.62	10.5	5.5	0.93	10.0	5.0	1.9	1	1	0	1	1	1	0	AAA	domain
DUF1418	PF07214.12	gi|227826817|ref|YP_002828596.1|	-	0.18	11.7	5.2	0.38	10.6	0.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1418)
LDcluster4	PF18306.1	gi|227826818|ref|YP_002828597.1|	-	7.8e-18	64.6	0.0	8.7e-18	64.4	0.0	1.0	1	0	0	1	1	1	1	SLOG	cluster4	family
Nuc_deoxyrib_tr	PF05014.15	gi|227826818|ref|YP_002828597.1|	-	0.052	13.6	0.0	0.079	13.0	0.0	1.5	1	0	0	1	1	1	0	Nucleoside	2-deoxyribosyltransferase
LD_cluster2	PF18163.1	gi|227826818|ref|YP_002828597.1|	-	0.11	12.1	0.0	9.1	5.7	0.0	2.2	1	1	1	2	2	2	0	SLOG	cluster2
LSDAT_prok	PF18171.1	gi|227826818|ref|YP_002828597.1|	-	0.12	11.6	0.0	0.16	11.2	0.0	1.3	1	1	0	1	1	1	0	SLOG	in	TRPM,	prokaryote
Lysine_decarbox	PF03641.14	gi|227826818|ref|YP_002828597.1|	-	0.12	12.4	0.1	0.29	11.2	0.1	1.6	1	1	0	1	1	1	0	Possible	lysine	decarboxylase
TPALS	PF18178.1	gi|227826818|ref|YP_002828597.1|	-	0.12	11.7	0.2	0.5	9.8	0.0	1.9	2	1	0	2	2	2	0	TIR-	and	PNP-associating	SLOG	family
CRS1_YhbY	PF01985.21	gi|227826818|ref|YP_002828597.1|	-	0.13	12.4	0.0	0.79	9.9	0.0	2.0	2	0	0	2	2	2	0	CRS1	/	YhbY	(CRM)	domain
Ldh_2	PF02615.14	gi|227826819|ref|YP_002828598.1|	-	2.2e-79	267.1	0.0	3.1e-79	266.6	0.0	1.2	1	0	0	1	1	1	1	Malate/L-lactate	dehydrogenase
SAF	PF08666.12	gi|227826820|ref|YP_002828599.1|	-	6.5e-16	58.7	2.8	1.4e-15	57.6	2.8	1.6	1	1	0	1	1	1	1	SAF	domain
DUF2190	PF09956.9	gi|227826820|ref|YP_002828599.1|	-	0.056	13.9	0.1	0.24	11.9	0.1	1.9	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2190)
Arteri_nsp7a	PF16749.5	gi|227826820|ref|YP_002828599.1|	-	0.19	11.9	0.0	0.28	11.4	0.0	1.2	1	0	0	1	1	1	0	Arterivirus	nonstructural	protein	7	alpha
GD_AH_C	PF04295.13	gi|227826821|ref|YP_002828600.1|	-	4.4e-123	411.0	0.0	5e-123	410.8	0.0	1.0	1	0	0	1	1	1	1	D-galactarate	dehydratase	/	Altronate	hydrolase,	C	terminus
MR_MLE_C	PF13378.6	gi|227826822|ref|YP_002828601.1|	-	2.2e-39	135.3	0.0	3.3e-39	134.7	0.0	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227826822|ref|YP_002828601.1|	-	3e-07	30.7	0.0	4.8e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
DUF4792	PF16040.5	gi|227826822|ref|YP_002828601.1|	-	0.038	13.9	0.1	0.082	12.8	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4792)
FCD	PF07729.12	gi|227826823|ref|YP_002828602.1|	-	3.8e-24	85.5	1.3	5e-24	85.1	1.3	1.1	1	0	0	1	1	1	1	FCD	domain
GntR	PF00392.21	gi|227826823|ref|YP_002828602.1|	-	2.1e-16	59.3	0.1	5e-16	58.1	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
FadR_C	PF07840.12	gi|227826823|ref|YP_002828602.1|	-	0.00014	21.8	0.8	0.00022	21.2	0.8	1.4	1	1	0	1	1	1	1	FadR	C-terminal	domain
Phage_rep_O	PF04492.13	gi|227826823|ref|YP_002828602.1|	-	0.00054	20.5	0.1	0.029	14.9	0.0	2.5	2	0	0	2	2	2	1	Bacteriophage	replication	protein	O
HTH_Crp_2	PF13545.6	gi|227826823|ref|YP_002828602.1|	-	0.00061	19.7	0.0	0.0019	18.1	0.0	1.9	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Prefoldin	PF02996.17	gi|227826823|ref|YP_002828602.1|	-	0.00092	19.1	0.2	0.0019	18.1	0.2	1.5	1	0	0	1	1	1	1	Prefoldin	subunit
HTH_24	PF13412.6	gi|227826823|ref|YP_002828602.1|	-	0.0034	16.9	2.0	0.0056	16.2	0.6	2.3	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|227826823|ref|YP_002828602.1|	-	0.0043	16.9	3.0	0.0071	16.2	0.0	2.7	3	1	0	3	3	3	1	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|227826823|ref|YP_002828602.1|	-	0.016	15.7	0.1	0.055	14.0	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|227826823|ref|YP_002828602.1|	-	0.017	15.1	1.2	0.039	13.9	0.1	2.3	2	0	0	2	2	2	0	HTH	domain
HTH_DeoR	PF08220.12	gi|227826823|ref|YP_002828602.1|	-	0.03	14.1	0.0	0.098	12.4	0.0	1.9	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|227826823|ref|YP_002828602.1|	-	0.033	14.1	0.1	0.085	12.8	0.1	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4423	PF14394.6	gi|227826823|ref|YP_002828602.1|	-	0.067	12.9	6.3	0.15	11.8	0.1	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4423)
FaeA	PF04703.12	gi|227826823|ref|YP_002828602.1|	-	0.075	13.4	1.4	0.45	10.9	0.1	2.7	3	0	0	3	3	3	0	FaeA-like	protein
HpcH_HpaI	PF03328.14	gi|227826824|ref|YP_002828603.1|	-	6.6e-36	123.5	0.1	2.8e-34	118.2	0.1	2.2	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|227826824|ref|YP_002828603.1|	-	1.6e-16	60.4	0.1	1.6e-13	50.6	0.1	2.2	1	1	0	1	1	1	1	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
BH4	PF02180.17	gi|227826824|ref|YP_002828603.1|	-	0.11	12.4	0.2	0.24	11.3	0.2	1.5	1	0	0	1	1	1	0	Bcl-2	homology	region	4
4HBT	PF03061.22	gi|227826825|ref|YP_002828604.1|	-	2.5e-18	66.2	0.0	3.2e-18	65.8	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.6	gi|227826825|ref|YP_002828604.1|	-	5e-06	26.9	0.0	6e-06	26.7	0.0	1.0	1	0	0	1	1	1	1	Thioesterase-like	superfamily
DUF4442	PF14539.6	gi|227826825|ref|YP_002828604.1|	-	0.0049	17.0	0.0	0.0064	16.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
PS-DH	PF14765.6	gi|227826825|ref|YP_002828604.1|	-	0.15	11.3	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
ATPase_2	PF01637.18	gi|227826826|ref|YP_002828605.1|	-	3.5e-10	40.2	0.8	7.9e-10	39.0	0.8	1.6	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|227826826|ref|YP_002828605.1|	-	1.1e-09	38.4	0.8	4.6e-09	36.4	0.2	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|227826826|ref|YP_002828605.1|	-	2.7e-06	27.7	0.1	8.1e-06	26.2	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|227826826|ref|YP_002828605.1|	-	6e-06	26.7	0.3	1.6e-05	25.4	0.1	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|227826826|ref|YP_002828605.1|	-	0.028	14.8	0.1	0.099	13.0	0.0	1.9	2	1	0	2	2	2	0	AAA	ATPase	domain
Roc	PF08477.13	gi|227826826|ref|YP_002828605.1|	-	0.053	13.7	0.0	0.095	12.9	0.0	1.5	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
DUF1803	PF08820.10	gi|227826826|ref|YP_002828605.1|	-	0.063	13.3	0.1	0.17	11.9	0.1	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
CorA	PF01544.18	gi|227826827|ref|YP_002828606.1|	-	1.3e-10	41.0	7.6	3.1e-10	39.9	7.6	1.5	1	1	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
SDF	PF00375.18	gi|227826827|ref|YP_002828606.1|	-	0.022	13.8	1.6	0.03	13.4	1.6	1.1	1	0	0	1	1	1	0	Sodium:dicarboxylate	symporter	family
DUF3923	PF13061.6	gi|227826827|ref|YP_002828606.1|	-	0.11	12.5	4.0	0.28	11.3	4.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3923)
Lon_C	PF05362.13	gi|227826828|ref|YP_002828607.1|	-	0.11	12.0	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	Lon	protease	(S16)	C-terminal	proteolytic	domain
CbiA	PF01656.23	gi|227826829|ref|YP_002828608.1|	-	1.6e-10	41.1	0.0	2.8e-10	40.3	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|227826829|ref|YP_002828608.1|	-	2.5e-09	37.3	1.4	3.6e-09	36.8	0.5	1.7	2	0	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|227826829|ref|YP_002828608.1|	-	3e-05	23.6	1.1	4.2e-05	23.1	0.4	1.6	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|227826829|ref|YP_002828608.1|	-	0.00046	19.5	3.0	0.00062	19.1	0.3	2.5	2	1	1	3	3	3	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|227826829|ref|YP_002828608.1|	-	0.0073	15.8	0.0	0.015	14.8	0.0	1.5	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|227826829|ref|YP_002828608.1|	-	0.0087	15.4	0.1	4.9	6.4	0.0	2.7	3	0	0	3	3	3	2	ATPase	MipZ
NAD_binding_2	PF03446.15	gi|227826830|ref|YP_002828609.1|	-	8e-53	178.8	1.0	8.9e-53	178.7	0.2	1.5	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.6	gi|227826830|ref|YP_002828609.1|	-	6.7e-36	123.2	0.6	9.2e-36	122.8	0.6	1.2	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.17	gi|227826830|ref|YP_002828609.1|	-	3.3e-07	30.8	0.0	9.7e-07	29.3	0.0	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|227826830|ref|YP_002828609.1|	-	3.6e-07	29.7	0.0	2.7e-06	26.9	0.0	2.2	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|227826830|ref|YP_002828609.1|	-	0.0018	17.9	0.0	0.0032	17.1	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
UDPG_MGDP_dh	PF00984.19	gi|227826830|ref|YP_002828609.1|	-	0.0028	17.8	0.0	0.011	15.9	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
DapB_N	PF01113.20	gi|227826830|ref|YP_002828609.1|	-	0.0069	16.5	0.0	0.023	14.8	0.0	1.9	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
3HCDH_N	PF02737.18	gi|227826830|ref|YP_002828609.1|	-	0.0079	16.1	0.3	0.04	13.8	0.1	2.2	2	1	1	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|227826830|ref|YP_002828609.1|	-	0.032	14.3	1.0	0.053	13.6	0.0	1.9	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
IlvN	PF07991.12	gi|227826830|ref|YP_002828609.1|	-	0.045	13.3	0.0	0.087	12.4	0.0	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
HTH_34	PF13601.6	gi|227826831|ref|YP_002828610.1|	-	0.00036	20.7	0.7	0.0051	17.0	0.1	2.5	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|227826831|ref|YP_002828610.1|	-	0.0029	17.5	0.2	0.005	16.8	0.2	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|227826831|ref|YP_002828610.1|	-	0.01	15.4	0.0	0.026	14.1	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Dexa_ind	PF15198.6	gi|227826831|ref|YP_002828610.1|	-	0.031	14.4	1.4	0.046	13.8	0.3	1.9	2	1	0	2	2	2	0	Dexamethasone-induced
HTH_20	PF12840.7	gi|227826831|ref|YP_002828610.1|	-	0.12	12.5	0.0	0.21	11.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227826831|ref|YP_002828610.1|	-	0.13	12.5	0.0	0.24	11.6	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|227826831|ref|YP_002828610.1|	-	0.13	12.3	0.1	0.26	11.3	0.1	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
ATPase_2	PF01637.18	gi|227826832|ref|YP_002828611.1|	-	5.5e-17	62.5	2.7	5.6e-17	62.4	0.3	1.9	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|227826832|ref|YP_002828611.1|	-	2.1e-08	34.3	3.0	6.1e-07	29.5	0.8	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|227826832|ref|YP_002828611.1|	-	4e-07	30.6	0.0	8.1e-07	29.6	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|227826832|ref|YP_002828611.1|	-	6.1e-06	26.3	0.6	6.1e-06	26.3	0.6	1.6	2	0	0	2	2	2	1	NTPase
AAA_35	PF14516.6	gi|227826832|ref|YP_002828611.1|	-	8.7e-05	21.5	0.7	0.00013	21.0	0.1	1.5	2	0	0	2	2	2	1	AAA-like	domain
AAA	PF00004.29	gi|227826832|ref|YP_002828611.1|	-	0.00056	20.3	0.1	0.0016	18.9	0.1	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|227826832|ref|YP_002828611.1|	-	0.034	14.1	0.0	0.083	12.8	0.0	1.7	1	1	0	1	1	1	0	NACHT	domain
DUF815	PF05673.13	gi|227826832|ref|YP_002828611.1|	-	0.067	12.3	0.9	0.14	11.3	0.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
AAA_19	PF13245.6	gi|227826832|ref|YP_002828611.1|	-	0.1	12.9	0.0	0.26	11.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
HEPN	PF05168.14	gi|227826834|ref|YP_002828613.1|	-	1.3e-19	70.4	1.1	1.6e-19	70.2	1.1	1.0	1	0	0	1	1	1	1	HEPN	domain
Folliculin	PF11704.8	gi|227826834|ref|YP_002828613.1|	-	0.1	12.4	0.0	0.16	11.8	0.0	1.2	1	0	0	1	1	1	0	Vesicle	coat	protein	involved	in	Golgi	to	plasma	membrane	transport
NTP_transf_2	PF01909.23	gi|227826835|ref|YP_002828614.1|	-	2.1e-12	47.2	0.9	2.4e-12	47.0	0.1	1.5	2	0	0	2	2	2	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227826835|ref|YP_002828614.1|	-	6.6e-10	38.9	0.1	1.2e-09	38.1	0.1	1.4	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|227826835|ref|YP_002828614.1|	-	0.0076	16.1	0.0	0.019	14.7	0.0	1.6	2	0	0	2	2	2	1	Putative	nucleotidyltransferase	DUF294
DNA_pol_B_palm	PF14792.6	gi|227826835|ref|YP_002828614.1|	-	0.018	15.2	0.0	0.032	14.4	0.0	1.4	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
DEDD_Tnp_IS110	PF01548.17	gi|227826836|ref|YP_002828615.1|	-	0.00087	19.2	0.0	0.00091	19.1	0.0	1.1	1	0	0	1	1	1	1	Transposase
NTP_transf_2	PF01909.23	gi|227826837|ref|YP_002828616.1|	-	7.3e-08	32.6	0.3	9.5e-08	32.2	0.3	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227826837|ref|YP_002828616.1|	-	9.4e-06	25.6	0.2	1.4e-05	25.1	0.2	1.4	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
SBP_bac_8	PF13416.6	gi|227826838|ref|YP_002828617.1|	-	0.00023	21.1	6.4	0.00023	21.1	6.4	2.3	3	1	1	4	4	4	1	Bacterial	extracellular	solute-binding	protein
Sigma_reg_N	PF13800.6	gi|227826838|ref|YP_002828617.1|	-	0.022	15.0	1.0	0.048	13.9	1.0	1.6	1	0	0	1	1	1	0	Sigma	factor	regulator	N-terminal
Lactamase_B	PF00753.27	gi|227826839|ref|YP_002828618.1|	-	1.3e-27	97.1	0.0	1.8e-27	96.7	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227826839|ref|YP_002828618.1|	-	1.9e-05	24.3	0.1	6.5e-05	22.5	0.1	2.0	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
HTH_10	PF04967.12	gi|227826840|ref|YP_002828619.1|	-	1.5e-19	69.5	0.1	3e-19	68.6	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_30	PF13556.6	gi|227826840|ref|YP_002828619.1|	-	0.045	13.6	0.0	0.084	12.7	0.0	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HgmA	PF04209.13	gi|227826841|ref|YP_002828620.1|	-	2e-13	49.8	0.5	2.8e-13	49.4	0.5	1.1	1	0	0	1	1	1	1	homogentisate	1,2-dioxygenase
Cupin_2	PF07883.11	gi|227826841|ref|YP_002828620.1|	-	0.0019	17.9	0.2	0.026	14.2	0.0	2.3	2	0	0	2	2	2	1	Cupin	domain
Bac_luciferase	PF00296.20	gi|227826842|ref|YP_002828621.1|	-	1.4e-45	156.0	0.0	7.1e-45	153.8	0.0	1.8	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
HTH_40	PF14493.6	gi|227826843|ref|YP_002828622.1|	-	0.14	12.7	2.9	0.41	11.1	0.3	2.2	1	1	1	2	2	2	0	Helix-turn-helix	domain
DUF4274	PF14096.6	gi|227826843|ref|YP_002828622.1|	-	0.15	12.1	1.0	0.33	10.9	1.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4274)
DUF2371	PF10177.9	gi|227826844|ref|YP_002828623.1|	-	0.0028	17.9	5.4	0.074	13.2	0.1	2.2	2	0	0	2	2	2	2	Uncharacterised	conserved	protein	(DUF2371)
DUF3185	PF11381.8	gi|227826844|ref|YP_002828623.1|	-	0.0076	16.2	12.7	0.022	14.8	2.3	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3185)
Neurensin	PF14927.6	gi|227826844|ref|YP_002828623.1|	-	0.051	13.3	8.4	0.82	9.4	0.7	2.2	2	0	0	2	2	2	0	Neurensin
Phage_holin_3_6	PF07332.11	gi|227826844|ref|YP_002828623.1|	-	0.11	12.6	11.7	0.41	10.7	3.1	2.2	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Myelin_PLP	PF01275.19	gi|227826844|ref|YP_002828623.1|	-	0.12	12.2	2.5	1.1	9.1	0.3	2.1	2	0	0	2	2	2	0	Myelin	proteolipid	protein	(PLP	or	lipophilin)
DUF2207	PF09972.9	gi|227826844|ref|YP_002828623.1|	-	0.12	11.1	0.7	0.18	10.5	0.7	1.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3784	PF12650.7	gi|227826844|ref|YP_002828623.1|	-	0.39	10.9	7.8	1.7	8.9	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
DUF4212	PF13937.6	gi|227826844|ref|YP_002828623.1|	-	0.48	10.8	4.7	0.26	11.7	0.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4212)
DUF4418	PF14387.6	gi|227826844|ref|YP_002828623.1|	-	0.95	9.7	5.8	1.9	8.7	1.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4418)
Gram_pos_anchor	PF00746.21	gi|227826844|ref|YP_002828623.1|	-	4.7	7.2	11.7	1.1	9.3	2.1	2.4	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
Metallophos_3	PF14582.6	gi|227826845|ref|YP_002828624.1|	-	2.4e-08	33.6	0.1	7.6e-07	28.7	0.0	2.4	2	1	0	2	2	2	1	Metallophosphoesterase,	calcineurin	superfamily
Metallophos_2	PF12850.7	gi|227826845|ref|YP_002828624.1|	-	7.3e-07	29.5	0.0	0.00096	19.4	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|227826845|ref|YP_002828624.1|	-	9.2e-05	23.0	0.1	0.46	11.0	0.0	2.4	1	1	0	2	2	2	2	Calcineurin-like	phosphoesterase
DLH	PF01738.18	gi|227826846|ref|YP_002828625.1|	-	6.4e-80	267.8	0.0	1.1e-79	266.9	0.0	1.4	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|227826846|ref|YP_002828625.1|	-	3.4e-08	33.1	0.0	0.00081	18.7	0.0	2.7	3	0	0	3	3	3	2	Serine	aminopeptidase,	S33
Abhydrolase_2	PF02230.16	gi|227826846|ref|YP_002828625.1|	-	4.2e-05	23.5	0.0	6.5e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Phospholipase/Carboxylesterase
Abhydrolase_5	PF12695.7	gi|227826846|ref|YP_002828625.1|	-	0.0051	16.6	0.0	0.043	13.6	0.0	2.1	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
DUF4517	PF15006.6	gi|227826846|ref|YP_002828625.1|	-	0.014	15.5	0.0	0.02	15.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4517)
Abhydrolase_1	PF00561.20	gi|227826846|ref|YP_002828625.1|	-	0.015	15.0	0.0	0.074	12.7	0.0	1.9	2	0	0	2	2	2	0	alpha/beta	hydrolase	fold
BAAT_C	PF08840.11	gi|227826846|ref|YP_002828625.1|	-	0.034	14.1	0.3	13	5.7	0.0	2.9	3	0	0	3	3	3	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S9	PF00326.21	gi|227826846|ref|YP_002828625.1|	-	0.12	11.9	0.0	8.9	5.7	0.0	2.3	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
Abhydrolase_3	PF07859.13	gi|227826846|ref|YP_002828625.1|	-	0.12	12.2	0.0	2.4	8.0	0.0	2.4	2	1	1	3	3	3	0	alpha/beta	hydrolase	fold
Pro-kuma_activ	PF09286.11	gi|227826847|ref|YP_002828626.1|	-	2.7e-28	99.1	0.0	4.5e-28	98.3	0.0	1.4	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
TENA_THI-4	PF03070.16	gi|227826848|ref|YP_002828627.1|	-	4.4e-42	144.3	0.0	5.2e-42	144.0	0.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Tsc35	PF15079.6	gi|227826848|ref|YP_002828627.1|	-	0.12	11.9	0.0	0.19	11.3	0.0	1.3	1	0	0	1	1	1	0	Testis-specific	protein	35
Ald_Xan_dh_C2	PF02738.18	gi|227826849|ref|YP_002828628.1|	-	1e-93	314.7	0.0	1.5e-93	314.1	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227826849|ref|YP_002828628.1|	-	5.7e-25	87.8	0.0	1.2e-24	86.8	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF202	PF02656.15	gi|227826850|ref|YP_002828629.1|	-	2.5	8.6	10.5	8.5	6.9	2.5	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Alpha-amylase	PF00128.24	gi|227826851|ref|YP_002828630.1|	-	1.6e-34	120.0	2.7	2.2e-22	80.1	0.1	3.2	2	1	0	2	2	2	2	Alpha	amylase,	catalytic	domain
Alpha-amyl_C	PF09071.10	gi|227826851|ref|YP_002828630.1|	-	3.6e-27	94.0	0.3	9e-27	92.7	0.3	1.7	1	0	0	1	1	1	1	Alpha-amylase,	C	terminal
CBM_48	PF02922.18	gi|227826851|ref|YP_002828630.1|	-	4.7e-06	26.9	0.1	2.4e-05	24.6	0.0	2.2	2	0	0	2	2	2	1	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
CBM_48	PF02922.18	gi|227826852|ref|YP_002828631.1|	-	5.6e-19	68.3	0.0	3.1e-18	65.9	0.0	2.3	2	0	0	2	2	2	1	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
Alpha-amylase	PF00128.24	gi|227826852|ref|YP_002828631.1|	-	1.1e-16	61.3	1.0	2.7e-09	37.1	0.1	3.3	1	1	1	2	2	2	2	Alpha	amylase,	catalytic	domain
Alpha-amylase_C	PF02806.18	gi|227826852|ref|YP_002828631.1|	-	0.0054	17.2	0.0	0.014	15.8	0.0	1.8	1	0	0	1	1	1	1	Alpha	amylase,	C-terminal	all-beta	domain
Pur_ac_phosph_N	PF16656.5	gi|227826852|ref|YP_002828631.1|	-	0.086	13.4	0.0	0.35	11.5	0.0	2.0	1	0	0	1	1	1	0	Purple	acid	Phosphatase,	N-terminal	domain
Alpha-amylase	PF00128.24	gi|227826853|ref|YP_002828632.1|	-	2.9e-24	86.3	5.2	1.1e-20	74.5	0.6	3.4	3	1	0	3	3	3	2	Alpha	amylase,	catalytic	domain
Tricorn_PDZ	PF14685.6	gi|227826854|ref|YP_002828633.1|	-	2.8e-25	88.1	0.2	5.8e-25	87.1	0.2	1.6	1	0	0	1	1	1	1	Tricorn	protease	PDZ	domain
Peptidase_S41	PF03572.18	gi|227826854|ref|YP_002828633.1|	-	4.5e-23	81.6	0.0	1.6e-22	79.8	0.0	2.0	2	0	0	2	2	2	1	Peptidase	family	S41
Tricorn_C1	PF14684.6	gi|227826854|ref|YP_002828633.1|	-	3.1e-22	78.4	2.7	6e-22	77.5	2.7	1.5	1	0	0	1	1	1	1	Tricorn	protease	C1	domain
PD40	PF07676.12	gi|227826854|ref|YP_002828633.1|	-	1.6e-12	47.0	0.6	1e-05	25.3	0.1	6.2	6	0	0	6	6	6	2	WD40-like	Beta	Propeller	Repeat
PB1	PF00564.24	gi|227826854|ref|YP_002828633.1|	-	0.036	14.0	0.4	0.3	11.0	0.2	2.3	2	0	0	2	2	2	0	PB1	domain
BNR	PF02012.20	gi|227826854|ref|YP_002828633.1|	-	0.12	12.5	0.1	0.75	10.0	0.1	2.5	1	0	0	1	1	1	0	BNR/Asp-box	repeat
RibD_C	PF01872.17	gi|227826855|ref|YP_002828634.1|	-	2.2e-54	184.4	0.0	2.4e-54	184.2	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
Glycoprotein_B	PF00606.18	gi|227826856|ref|YP_002828635.1|	-	0.05	13.0	0.1	0.061	12.8	0.1	1.1	1	0	0	1	1	1	0	Herpesvirus	Glycoprotein	B	ectodomain
rve_2	PF13333.6	gi|227826856|ref|YP_002828635.1|	-	0.49	10.6	3.4	6.1	7.1	3.4	2.3	1	1	0	1	1	1	0	Integrase	core	domain
NTP_transf_5	PF14907.6	gi|227826857|ref|YP_002828636.1|	-	0.00074	19.2	0.0	0.0011	18.7	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
Gp_dh_N	PF00044.24	gi|227826857|ref|YP_002828636.1|	-	0.15	12.4	0.0	0.35	11.2	0.0	1.6	1	1	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DUF973	PF06157.11	gi|227826858|ref|YP_002828637.1|	-	5.8e-65	219.4	33.4	1.5e-64	218.0	33.4	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
MerC	PF03203.14	gi|227826858|ref|YP_002828637.1|	-	3.3	8.2	7.3	2.6	8.5	5.9	1.6	2	0	0	2	2	2	0	MerC	mercury	resistance	protein
DUF2157	PF09925.9	gi|227826858|ref|YP_002828637.1|	-	4.6	7.0	7.5	27	4.6	7.5	2.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DUF4860	PF16152.5	gi|227826860|ref|YP_002828639.1|	-	0.18	11.6	0.4	0.79	9.6	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4860)
DUF3267	PF11667.8	gi|227826861|ref|YP_002828640.1|	-	0.44	10.9	8.2	0.12	12.7	5.1	1.7	1	1	1	2	2	2	0	Putative	zincin	peptidase
zf-C2H2	PF00096.26	gi|227826862|ref|YP_002828641.1|	-	6.7e-08	32.6	8.8	0.00011	22.5	0.3	2.2	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|227826862|ref|YP_002828641.1|	-	2.7e-07	30.9	5.3	0.001	19.7	0.2	2.4	2	1	0	2	2	2	2	C2H2-type	zinc	finger
zf-met	PF12874.7	gi|227826862|ref|YP_002828641.1|	-	6.9e-06	26.3	6.3	0.0014	18.9	0.1	2.6	2	1	0	2	2	2	2	Zinc-finger	of	C2H2	type
zf-C2H2_2	PF12756.7	gi|227826862|ref|YP_002828641.1|	-	2.5e-05	24.5	2.9	0.1	12.9	1.3	2.0	1	1	1	2	2	2	2	C2H2	type	zinc-finger	(2	copies)
zf-C2H2_9	PF16293.5	gi|227826862|ref|YP_002828641.1|	-	0.00019	21.2	3.5	0.08	12.8	0.2	2.1	1	1	1	2	2	2	2	C2H2	type	zinc-finger	(1	copy)
zf-RING_2	PF13639.6	gi|227826862|ref|YP_002828641.1|	-	0.00028	21.1	6.7	0.025	14.9	3.4	2.1	2	0	0	2	2	2	2	Ring	finger	domain
zf-C2H2_jaz	PF12171.8	gi|227826862|ref|YP_002828641.1|	-	0.00033	20.9	3.2	0.21	11.9	0.0	2.8	2	1	0	2	2	2	2	Zinc-finger	double-stranded	RNA-binding
UBZ_FAAP20	PF15750.5	gi|227826862|ref|YP_002828641.1|	-	0.0014	18.5	2.1	0.086	12.8	0.1	2.3	2	0	0	2	2	2	1	Ubiquitin-binding	zinc-finger
zf-Di19	PF05605.12	gi|227826862|ref|YP_002828641.1|	-	0.0015	18.8	8.4	0.16	12.3	3.4	2.1	1	1	1	2	2	2	2	Drought	induced	19	protein	(Di19),	zinc-binding
Zn-C2H2_12	PF18112.1	gi|227826862|ref|YP_002828641.1|	-	0.002	18.6	9.1	0.11	13.0	2.7	2.6	2	1	0	2	2	2	2	Autophagy	receptor	zinc	finger-C2H2	domain
DUF2256	PF10013.9	gi|227826862|ref|YP_002828641.1|	-	0.0024	17.9	1.0	0.1	12.7	0.2	2.4	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
zf-C2H2_11	PF16622.5	gi|227826862|ref|YP_002828641.1|	-	0.0026	17.5	1.8	0.013	15.3	0.3	2.2	2	0	0	2	2	2	1	zinc-finger	C2H2-type
HNH_5	PF14279.6	gi|227826862|ref|YP_002828641.1|	-	0.0047	16.8	3.5	0.033	14.0	1.9	2.1	2	0	0	2	2	2	1	HNH	endonuclease
Rad50_zn_hook	PF04423.14	gi|227826862|ref|YP_002828641.1|	-	0.0058	16.4	5.3	0.056	13.3	0.2	2.2	1	1	1	2	2	2	1	Rad50	zinc	hook	motif
zf-RING_UBOX	PF13445.6	gi|227826862|ref|YP_002828641.1|	-	0.012	15.7	7.5	0.093	12.8	3.2	2.2	2	0	0	2	2	2	0	RING-type	zinc-finger
zf-MYST	PF17772.1	gi|227826862|ref|YP_002828641.1|	-	0.013	15.1	0.8	0.047	13.3	0.3	2.1	1	1	0	1	1	1	0	MYST	family	zinc	finger	domain
FYVE	PF01363.21	gi|227826862|ref|YP_002828641.1|	-	0.014	15.5	3.9	0.51	10.5	3.2	2.1	1	1	1	2	2	2	0	FYVE	zinc	finger
zf_UBZ	PF18439.1	gi|227826862|ref|YP_002828641.1|	-	0.019	14.5	0.7	2.6	7.7	0.2	2.5	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Prok-RING_4	PF14447.6	gi|227826862|ref|YP_002828641.1|	-	0.051	13.5	0.1	0.051	13.5	0.1	2.5	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	4
zf-C2HC_2	PF13913.6	gi|227826862|ref|YP_002828641.1|	-	0.056	13.4	0.6	0.056	13.4	0.6	2.5	2	1	0	2	2	2	0	zinc-finger	of	a	C2HC-type
TF_Zn_Ribbon	PF08271.12	gi|227826862|ref|YP_002828641.1|	-	0.079	12.5	1.6	0.079	12.5	1.6	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF629	PF04780.12	gi|227826862|ref|YP_002828641.1|	-	0.13	10.7	4.5	1.9	6.9	2.9	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF629)
GAGA	PF09237.11	gi|227826862|ref|YP_002828641.1|	-	0.28	11.0	3.6	5.7	6.8	1.0	2.2	1	1	1	2	2	2	0	GAGA	factor
zf-H2C2_2	PF13465.6	gi|227826862|ref|YP_002828641.1|	-	0.48	10.9	15.2	0.38	11.3	3.5	3.0	3	1	0	3	3	2	0	Zinc-finger	double	domain
zinc_ribbon_9	PF14369.6	gi|227826862|ref|YP_002828641.1|	-	0.51	10.6	0.0	0.51	10.6	0.0	2.5	3	0	0	3	3	3	0	zinc-ribbon
zf-C2H2_6	PF13912.6	gi|227826862|ref|YP_002828641.1|	-	0.88	9.6	10.8	1.4	9.1	0.3	2.9	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-C3HC4_3	PF13920.6	gi|227826862|ref|YP_002828641.1|	-	1.1	9.1	9.1	1.6	8.6	3.9	2.6	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-RING_5	PF14634.6	gi|227826862|ref|YP_002828641.1|	-	5.4	7.1	11.3	2.8	8.0	5.1	2.4	1	1	0	2	2	2	0	zinc-RING	finger	domain
DUF5478	PF17572.2	gi|227826863|ref|YP_002828642.1|	-	0.084	13.0	0.1	0.29	11.3	0.0	1.9	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5478)
DUF4131	PF13567.6	gi|227826864|ref|YP_002828643.1|	-	0.18	11.4	0.2	0.18	11.4	0.2	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
VKOR	PF07884.14	gi|227826866|ref|YP_002828645.1|	-	1e-17	64.4	22.0	1.2e-17	64.3	22.0	1.0	1	0	0	1	1	1	1	Vitamin	K	epoxide	reductase	family
Y1_Tnp	PF01797.16	gi|227826867|ref|YP_002828646.1|	-	8e-41	138.9	0.0	9.1e-41	138.8	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
RCC_reductase	PF06405.11	gi|227826867|ref|YP_002828646.1|	-	0.12	11.5	0.0	0.23	10.6	0.0	1.4	1	1	0	1	1	1	0	Red	chlorophyll	catabolite	reductase	(RCC	reductase)
HTH_3	PF01381.22	gi|227826867|ref|YP_002828646.1|	-	0.13	12.4	0.3	24	5.1	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix
OrfB_IS605	PF01385.19	gi|227826868|ref|YP_002828647.1|	-	1.3e-33	115.7	0.1	2.9e-33	114.6	0.1	1.6	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|227826868|ref|YP_002828647.1|	-	8.4e-19	67.3	0.0	1.9e-18	66.1	0.0	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RuvX	PF03652.15	gi|227826868|ref|YP_002828647.1|	-	0.0025	18.2	0.0	0.0058	17.0	0.0	1.6	1	0	0	1	1	1	1	Holliday	junction	resolvase
Peptidase_C15	PF01470.17	gi|227826869|ref|YP_002828648.1|	-	6.6e-49	166.8	0.0	7.7e-49	166.6	0.0	1.0	1	0	0	1	1	1	1	Pyroglutamyl	peptidase
DUF16	PF01519.16	gi|227826870|ref|YP_002828649.1|	-	2.6e-08	34.3	20.3	1.1e-05	25.8	9.8	2.9	2	1	1	3	3	2	2	Protein	of	unknown	function	DUF16
Fib_alpha	PF08702.10	gi|227826870|ref|YP_002828649.1|	-	8.2e-07	29.3	12.9	0.0047	17.1	1.2	2.6	1	1	1	2	2	2	2	Fibrinogen	alpha/beta	chain	family
SlyX	PF04102.12	gi|227826870|ref|YP_002828649.1|	-	2.3e-06	28.1	10.2	0.0054	17.3	1.4	2.9	1	1	1	2	2	2	2	SlyX
Spc29	PF17082.5	gi|227826870|ref|YP_002828649.1|	-	3.4e-06	27.1	8.8	0.012	15.4	0.8	2.5	1	1	2	3	3	3	3	Spindle	Pole	Component	29
AAA_13	PF13166.6	gi|227826870|ref|YP_002828649.1|	-	4e-06	25.8	11.8	5.7e-06	25.3	11.8	1.1	1	0	0	1	1	1	1	AAA	domain
Collagen_mid	PF15984.5	gi|227826870|ref|YP_002828649.1|	-	1.5e-05	24.9	0.9	0.00014	21.7	1.0	2.0	1	1	1	2	2	2	2	Bacterial	collagen,	middle	region
ATG16	PF08614.11	gi|227826870|ref|YP_002828649.1|	-	2.3e-05	24.7	13.0	0.003	17.8	7.8	2.3	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
DUF3972	PF13118.6	gi|227826870|ref|YP_002828649.1|	-	2.7e-05	24.6	16.6	0.0066	16.9	3.4	3.0	4	0	0	4	4	2	2	Protein	of	unknown	function	(DUF3972)
DUF3782	PF12644.7	gi|227826870|ref|YP_002828649.1|	-	0.00014	21.9	9.6	0.23	11.6	9.6	3.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3782)
GAT	PF03127.14	gi|227826870|ref|YP_002828649.1|	-	0.00034	20.9	5.7	0.088	13.1	2.9	2.9	1	1	1	2	2	2	1	GAT	domain
TPR_11	PF13414.6	gi|227826870|ref|YP_002828649.1|	-	0.00037	20.1	5.8	7.8	6.3	0.0	5.2	3	2	2	5	5	5	0	TPR	repeat
IFT57	PF10498.9	gi|227826870|ref|YP_002828649.1|	-	0.00037	19.6	11.9	0.00062	18.8	11.9	1.3	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
DUF1664	PF07889.12	gi|227826870|ref|YP_002828649.1|	-	0.00044	20.3	12.3	0.0019	18.2	6.3	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
UPF0242	PF06785.11	gi|227826870|ref|YP_002828649.1|	-	0.00058	20.0	10.7	0.00058	20.0	10.7	1.6	2	0	0	2	2	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
Taxilin	PF09728.9	gi|227826870|ref|YP_002828649.1|	-	0.00062	19.0	10.4	0.001	18.3	10.4	1.3	1	0	0	1	1	1	1	Myosin-like	coiled-coil	protein
DUF948	PF06103.11	gi|227826870|ref|YP_002828649.1|	-	0.00067	19.9	10.9	0.0055	16.9	5.4	2.8	1	1	3	4	4	4	3	Bacterial	protein	of	unknown	function	(DUF948)
Vps53_N	PF04100.12	gi|227826870|ref|YP_002828649.1|	-	0.00072	18.6	8.2	0.0013	17.7	8.2	1.5	1	0	0	1	1	1	1	Vps53-like,	N-terminal
HrpB7	PF09486.10	gi|227826870|ref|YP_002828649.1|	-	0.00076	19.9	6.4	0.0012	19.3	6.4	1.2	1	0	0	1	1	1	1	Bacterial	type	III	secretion	protein	(HrpB7)
FliJ	PF02050.16	gi|227826870|ref|YP_002828649.1|	-	0.00077	19.7	12.0	0.14	12.4	12.0	2.8	1	1	0	1	1	1	1	Flagellar	FliJ	protein
Fusion_gly	PF00523.18	gi|227826870|ref|YP_002828649.1|	-	0.00077	17.8	11.4	0.066	11.5	1.7	2.3	1	1	1	2	2	2	2	Fusion	glycoprotein	F0
Lebercilin	PF15619.6	gi|227826870|ref|YP_002828649.1|	-	0.00081	19.1	12.8	0.0025	17.5	12.7	1.7	1	1	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF4175	PF13779.6	gi|227826870|ref|YP_002828649.1|	-	0.00084	17.4	7.8	0.0024	15.9	7.8	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4175)
Exonuc_VII_L	PF02601.15	gi|227826870|ref|YP_002828649.1|	-	0.00097	18.8	5.6	0.0013	18.4	5.6	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
PDDEXK_10	PF07788.11	gi|227826870|ref|YP_002828649.1|	-	0.0013	18.6	4.8	0.0027	17.6	2.7	2.3	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
DUF2383	PF09537.10	gi|227826870|ref|YP_002828649.1|	-	0.0014	18.9	8.1	0.11	12.9	1.4	3.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF2383)
BAR_3	PF16746.5	gi|227826870|ref|YP_002828649.1|	-	0.0014	18.3	7.4	0.0029	17.4	7.3	1.5	1	1	0	1	1	1	1	BAR	domain	of	APPL	family
DUF4795	PF16043.5	gi|227826870|ref|YP_002828649.1|	-	0.0015	18.2	14.7	0.0078	15.8	3.8	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4795)
Spc7	PF08317.11	gi|227826870|ref|YP_002828649.1|	-	0.0015	17.4	13.1	0.0026	16.7	13.1	1.4	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF3584	PF12128.8	gi|227826870|ref|YP_002828649.1|	-	0.0016	16.0	6.4	0.002	15.8	6.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
LXG	PF04740.12	gi|227826870|ref|YP_002828649.1|	-	0.0016	18.2	9.4	0.003	17.3	7.9	2.0	1	1	1	2	2	2	2	LXG	domain	of	WXG	superfamily
Atg14	PF10186.9	gi|227826870|ref|YP_002828649.1|	-	0.0022	17.2	10.6	0.003	16.7	10.6	1.2	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Gp58	PF07902.11	gi|227826870|ref|YP_002828649.1|	-	0.0023	16.3	3.7	0.0035	15.7	3.7	1.3	1	0	0	1	1	1	1	gp58-like	protein
HAP1_N	PF04849.13	gi|227826870|ref|YP_002828649.1|	-	0.0025	17.1	10.6	0.0045	16.2	10.6	1.4	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
Cast	PF10174.9	gi|227826870|ref|YP_002828649.1|	-	0.0025	16.1	11.5	0.0077	14.5	11.5	1.5	1	1	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
YscO	PF07321.12	gi|227826870|ref|YP_002828649.1|	-	0.0028	17.6	14.7	0.16	11.9	4.6	2.2	1	1	1	2	2	2	2	Type	III	secretion	protein	YscO
HOOK	PF05622.12	gi|227826870|ref|YP_002828649.1|	-	0.0029	15.8	13.9	0.0059	14.8	13.9	1.4	1	1	0	1	1	1	1	HOOK	protein
DUF4407	PF14362.6	gi|227826870|ref|YP_002828649.1|	-	0.003	17.0	7.8	0.0044	16.4	7.8	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
TMEM192	PF14802.6	gi|227826870|ref|YP_002828649.1|	-	0.003	16.7	8.7	0.23	10.5	0.8	2.4	1	1	1	2	2	2	2	TMEM192	family
Prominin	PF05478.11	gi|227826870|ref|YP_002828649.1|	-	0.0032	15.5	8.1	0.0042	15.1	8.1	1.2	1	0	0	1	1	1	1	Prominin
NPV_P10	PF05531.12	gi|227826870|ref|YP_002828649.1|	-	0.0032	17.9	12.3	0.095	13.2	3.1	2.8	1	1	1	2	2	2	1	Nucleopolyhedrovirus	P10	protein
TMF_DNA_bd	PF12329.8	gi|227826870|ref|YP_002828649.1|	-	0.0035	17.3	8.5	0.0035	17.3	8.5	3.2	2	1	1	3	3	2	2	TATA	element	modulatory	factor	1	DNA	binding
Fez1	PF06818.15	gi|227826870|ref|YP_002828649.1|	-	0.004	17.6	9.3	0.0064	17.0	9.3	1.4	1	0	0	1	1	1	1	Fez1
BLOC1_2	PF10046.9	gi|227826870|ref|YP_002828649.1|	-	0.0041	17.4	13.6	0.26	11.6	5.1	2.6	1	1	1	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
BRE1	PF08647.11	gi|227826870|ref|YP_002828649.1|	-	0.0052	16.8	14.9	0.034	14.2	12.0	2.7	1	1	2	3	3	3	2	BRE1	E3	ubiquitin	ligase
MCPsignal	PF00015.21	gi|227826870|ref|YP_002828649.1|	-	0.0052	16.6	24.0	0.017	14.9	6.5	2.1	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
TMP_2	PF06791.13	gi|227826870|ref|YP_002828649.1|	-	0.006	16.3	5.4	0.0091	15.7	5.4	1.3	1	0	0	1	1	1	1	Prophage	tail	length	tape	measure	protein
ADIP	PF11559.8	gi|227826870|ref|YP_002828649.1|	-	0.0068	16.5	14.3	0.039	14.0	14.3	2.0	1	1	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
HBM	PF16591.5	gi|227826870|ref|YP_002828649.1|	-	0.0073	15.8	8.9	0.02	14.3	8.7	1.8	1	1	1	2	2	2	1	Helical	bimodular	sensor	domain
V_ATPase_I	PF01496.19	gi|227826870|ref|YP_002828649.1|	-	0.0078	14.2	9.8	0.0091	14.0	9.8	1.0	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
FmiP_Thoc5	PF09766.9	gi|227826870|ref|YP_002828649.1|	-	0.0085	15.4	11.4	0.14	11.4	2.7	2.2	1	1	1	2	2	2	1	Fms-interacting	protein/Thoc5
APG17	PF04108.12	gi|227826870|ref|YP_002828649.1|	-	0.0093	15.1	10.0	0.012	14.8	8.0	1.8	1	1	1	2	2	2	2	Autophagy	protein	Apg17
TPR_MLP1_2	PF07926.12	gi|227826870|ref|YP_002828649.1|	-	0.0094	16.0	16.3	0.053	13.6	16.7	1.8	1	1	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
KASH_CCD	PF14662.6	gi|227826870|ref|YP_002828649.1|	-	0.011	15.6	13.3	0.039	13.8	3.7	2.2	1	1	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
ATG_C	PF09333.11	gi|227826870|ref|YP_002828649.1|	-	0.013	15.8	5.4	0.031	14.6	1.2	2.5	1	1	1	2	2	2	0	Autophagy-related	protein	C	terminal	domain
TPR_1	PF00515.28	gi|227826870|ref|YP_002828649.1|	-	0.014	15.2	0.8	56	3.8	0.1	4.5	2	1	3	5	5	4	0	Tetratricopeptide	repeat
ISG65-75	PF11727.8	gi|227826870|ref|YP_002828649.1|	-	0.015	14.6	10.2	0.026	13.8	10.2	1.4	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
HMMR_N	PF15905.5	gi|227826870|ref|YP_002828649.1|	-	0.015	14.8	15.7	0.064	12.7	15.7	2.0	1	1	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
Serine_rich	PF08824.10	gi|227826870|ref|YP_002828649.1|	-	0.016	15.2	4.6	0.033	14.2	0.6	2.4	1	1	1	2	2	2	0	Serine	rich	protein	interaction	domain
ERM	PF00769.19	gi|227826870|ref|YP_002828649.1|	-	0.018	14.8	11.2	0.038	13.8	11.2	1.5	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
PMEI	PF04043.15	gi|227826870|ref|YP_002828649.1|	-	0.019	15.3	0.9	0.028	14.8	0.9	1.3	1	0	0	1	1	1	0	Plant	invertase/pectin	methylesterase	inhibitor
SCO1-SenC	PF02630.14	gi|227826870|ref|YP_002828649.1|	-	0.02	14.8	0.2	0.13	12.1	0.2	2.0	1	1	1	2	2	2	0	SCO1/SenC
ZapB	PF06005.12	gi|227826870|ref|YP_002828649.1|	-	0.026	15.0	16.2	0.64	10.5	3.1	2.9	1	1	2	3	3	3	0	Cell	division	protein	ZapB
BORCS8	PF10167.9	gi|227826870|ref|YP_002828649.1|	-	0.026	14.4	5.2	0.052	13.5	4.5	1.7	1	1	0	1	1	1	0	BLOC-1-related	complex	sub-unit	8
AIP3	PF03915.13	gi|227826870|ref|YP_002828649.1|	-	0.028	13.5	10.5	0.04	13.0	10.5	1.1	1	0	0	1	1	1	0	Actin	interacting	protein	3
CorA	PF01544.18	gi|227826870|ref|YP_002828649.1|	-	0.029	13.7	6.2	0.017	14.4	3.2	1.9	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
COMP	PF11598.8	gi|227826870|ref|YP_002828649.1|	-	0.029	14.8	3.9	0.12	12.9	0.2	3.1	1	1	2	3	3	3	0	Cartilage	oligomeric	matrix	protein
Baculo_PEP_C	PF04513.12	gi|227826870|ref|YP_002828649.1|	-	0.03	14.4	10.0	0.23	11.5	10.1	2.0	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Rab5-bind	PF09311.11	gi|227826870|ref|YP_002828649.1|	-	0.036	13.5	13.1	0.064	12.6	13.1	1.3	1	0	0	1	1	1	0	Rabaptin-like	protein
TMPIT	PF07851.13	gi|227826870|ref|YP_002828649.1|	-	0.036	13.3	10.9	0.077	12.2	10.7	1.7	1	1	0	1	1	1	0	TMPIT-like	protein
DUF848	PF05852.11	gi|227826870|ref|YP_002828649.1|	-	0.038	14.1	8.7	0.13	12.4	8.0	2.2	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
ALIX_LYPXL_bnd	PF13949.6	gi|227826870|ref|YP_002828649.1|	-	0.039	13.2	12.6	0.2	10.9	12.3	2.0	1	1	1	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
RPW8	PF05659.11	gi|227826870|ref|YP_002828649.1|	-	0.041	13.6	8.1	1	9.1	2.5	2.5	1	1	1	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Bacillus_HBL	PF05791.11	gi|227826870|ref|YP_002828649.1|	-	0.043	13.6	13.4	0.65	9.8	11.2	2.3	1	1	2	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
FliD_N	PF02465.18	gi|227826870|ref|YP_002828649.1|	-	0.045	14.5	8.9	0.22	12.2	1.0	2.9	1	1	2	3	3	3	0	Flagellar	hook-associated	protein	2	N-terminus
FlaC_arch	PF05377.11	gi|227826870|ref|YP_002828649.1|	-	0.047	14.1	11.9	0.69	10.3	0.4	3.5	1	1	3	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
DUF745	PF05335.13	gi|227826870|ref|YP_002828649.1|	-	0.047	13.4	11.7	0.074	12.8	11.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF745)
Phage_GPO	PF05929.11	gi|227826870|ref|YP_002828649.1|	-	0.047	13.3	5.6	0.08	12.6	5.6	1.4	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
HAUS6_N	PF14661.6	gi|227826870|ref|YP_002828649.1|	-	0.048	13.2	6.4	0.075	12.6	6.4	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
HemX	PF04375.14	gi|227826870|ref|YP_002828649.1|	-	0.05	12.9	14.8	0.12	11.7	8.5	2.1	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
ANAPC5	PF12862.7	gi|227826870|ref|YP_002828649.1|	-	0.05	13.7	2.5	4.9	7.3	0.3	3.3	1	1	3	4	4	4	0	Anaphase-promoting	complex	subunit	5
DUF4763	PF15960.5	gi|227826870|ref|YP_002828649.1|	-	0.052	12.8	7.2	0.55	9.5	6.8	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4763)
FAT	PF02259.23	gi|227826870|ref|YP_002828649.1|	-	0.054	12.7	5.6	0.14	11.4	5.6	1.6	1	1	0	1	1	1	0	FAT	domain
Dak2	PF02734.17	gi|227826870|ref|YP_002828649.1|	-	0.058	13.3	5.3	0.16	11.9	4.1	2.1	2	0	0	2	2	2	0	DAK2	domain
GCN5L1	PF06320.13	gi|227826870|ref|YP_002828649.1|	-	0.066	13.4	11.8	0.55	10.4	2.3	2.4	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
DUF4618	PF15397.6	gi|227826870|ref|YP_002828649.1|	-	0.067	12.6	12.9	0.71	9.2	13.0	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4618)
TPR_8	PF13181.6	gi|227826870|ref|YP_002828649.1|	-	0.068	13.4	3.3	56	4.3	0.0	4.9	3	1	2	5	5	3	0	Tetratricopeptide	repeat
Prefoldin	PF02996.17	gi|227826870|ref|YP_002828649.1|	-	0.069	13.1	13.9	0.64	10.0	3.1	3.3	1	1	3	4	4	4	0	Prefoldin	subunit
DUF2201_N	PF13203.6	gi|227826870|ref|YP_002828649.1|	-	0.072	12.7	2.1	0.12	11.9	2.1	1.4	1	0	0	1	1	1	0	Putative	metallopeptidase	domain
PI3K_P85_iSH2	PF16454.5	gi|227826870|ref|YP_002828649.1|	-	0.079	12.6	9.4	0.23	11.0	9.4	1.7	1	1	0	1	1	1	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
DUF1487	PF07368.11	gi|227826870|ref|YP_002828649.1|	-	0.087	12.3	1.2	0.13	11.7	0.8	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1487)
H-kinase_dim	PF02895.14	gi|227826870|ref|YP_002828649.1|	-	0.088	13.2	9.5	1.5	9.2	0.7	3.1	1	1	1	2	2	2	0	Signal	transducing	histidine	kinase,	homodimeric	domain
COG5	PF10392.9	gi|227826870|ref|YP_002828649.1|	-	0.088	13.0	8.2	0.54	10.4	8.3	2.1	1	1	0	1	1	1	0	Golgi	transport	complex	subunit	5
HsbA	PF12296.8	gi|227826870|ref|YP_002828649.1|	-	0.089	13.2	5.8	0.24	11.8	4.3	2.1	1	1	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
DUF4988	PF16378.5	gi|227826870|ref|YP_002828649.1|	-	0.095	12.4	6.5	0.31	10.7	0.5	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function
DUF724	PF05266.14	gi|227826870|ref|YP_002828649.1|	-	0.096	12.5	10.1	0.17	11.7	10.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Corona_S2	PF01601.16	gi|227826870|ref|YP_002828649.1|	-	0.099	11.1	7.3	0.68	8.4	2.6	2.1	1	1	1	2	2	2	0	Coronavirus	S2	glycoprotein
Spectrin	PF00435.21	gi|227826870|ref|YP_002828649.1|	-	0.1	13.1	11.9	1.8	9.1	6.0	2.4	1	1	1	2	2	2	0	Spectrin	repeat
IKKbetaNEMObind	PF12179.8	gi|227826870|ref|YP_002828649.1|	-	0.1	12.7	2.5	16	5.6	0.1	3.7	1	1	2	4	4	3	0	I-kappa-kinase-beta	NEMO	binding	domain
SpecificRecomb	PF10136.9	gi|227826870|ref|YP_002828649.1|	-	0.11	10.8	2.8	0.14	10.4	2.8	1.2	1	0	0	1	1	1	0	Site-specific	recombinase
LMBR1	PF04791.16	gi|227826870|ref|YP_002828649.1|	-	0.11	11.4	5.3	0.14	11.1	5.3	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
CREPT	PF16566.5	gi|227826870|ref|YP_002828649.1|	-	0.11	12.6	10.2	0.62	10.2	3.0	2.3	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Sec34	PF04136.15	gi|227826870|ref|YP_002828649.1|	-	0.13	12.2	9.7	0.17	11.8	4.9	2.4	2	1	0	2	2	1	0	Sec34-like	family
Tropomyosin_1	PF12718.7	gi|227826870|ref|YP_002828649.1|	-	0.13	12.4	15.7	7.1	6.8	15.7	2.4	1	1	0	1	1	1	0	Tropomyosin	like
Laminin_II	PF06009.12	gi|227826870|ref|YP_002828649.1|	-	0.15	12.1	14.1	1	9.4	3.2	2.5	1	1	2	3	3	3	0	Laminin	Domain	II
TPR_16	PF13432.6	gi|227826870|ref|YP_002828649.1|	-	0.15	12.7	0.0	1.4e+02	3.2	0.0	3.6	2	1	0	3	3	3	0	Tetratricopeptide	repeat
DUF5344	PF17279.2	gi|227826870|ref|YP_002828649.1|	-	0.15	12.6	10.9	8.9	7.0	10.7	3.2	1	1	0	2	2	2	0	Family	of	unknown	function	(DUF5344)
Pinin_SDK_N	PF04697.13	gi|227826870|ref|YP_002828649.1|	-	0.17	12.5	4.9	3.8	8.2	0.7	2.7	2	2	0	2	2	2	0	pinin/SDK	conserved	region
DUF812	PF05667.11	gi|227826870|ref|YP_002828649.1|	-	0.19	10.6	16.3	0.32	9.8	15.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
DUF4094	PF13334.6	gi|227826870|ref|YP_002828649.1|	-	0.19	12.1	11.1	25	5.4	0.5	3.9	1	1	2	3	3	2	0	Domain	of	unknown	function	(DUF4094)
LemA	PF04011.12	gi|227826870|ref|YP_002828649.1|	-	0.2	11.5	6.9	0.41	10.5	5.1	2.1	1	1	1	2	2	2	0	LemA	family
PTR	PF12789.7	gi|227826870|ref|YP_002828649.1|	-	0.21	11.7	6.9	5.6	7.1	0.7	3.8	1	1	2	3	3	3	0	Phage	tail	repeat	like
MitMem_reg	PF13012.6	gi|227826870|ref|YP_002828649.1|	-	0.21	12.0	6.7	4.9	7.6	6.7	2.7	1	1	0	1	1	1	0	Maintenance	of	mitochondrial	structure	and	function
XhlA	PF10779.9	gi|227826870|ref|YP_002828649.1|	-	0.21	11.8	11.9	0.17	12.1	1.9	3.4	1	1	2	3	3	3	0	Haemolysin	XhlA
Lge1	PF11488.8	gi|227826870|ref|YP_002828649.1|	-	0.24	11.6	3.9	0.63	10.3	1.1	2.9	1	1	1	2	2	1	0	Transcriptional	regulatory	protein	LGE1
ECM11	PF15463.6	gi|227826870|ref|YP_002828649.1|	-	0.24	12.0	5.1	0.93	10.1	5.0	1.9	1	1	0	1	1	1	0	Extracellular	mutant	protein	11
Csm1_N	PF18504.1	gi|227826870|ref|YP_002828649.1|	-	0.29	11.5	16.5	2.2	8.7	3.1	3.7	1	1	1	3	3	3	0	Csm1	N-terminal	domain
FlgN	PF05130.12	gi|227826870|ref|YP_002828649.1|	-	0.3	11.6	14.3	0.57	10.7	14.3	1.5	1	1	0	1	1	1	0	FlgN	protein
DUF2680	PF10925.8	gi|227826870|ref|YP_002828649.1|	-	0.31	11.1	0.2	0.31	11.1	0.2	4.0	3	2	1	4	4	2	0	Protein	of	unknown	function	(DUF2680)
DUF5082	PF16888.5	gi|227826870|ref|YP_002828649.1|	-	0.34	11.2	14.7	2.6	8.3	5.1	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF5082)
SATase_N	PF06426.14	gi|227826870|ref|YP_002828649.1|	-	0.35	11.3	2.2	4.4	7.7	2.2	2.3	1	1	0	1	1	1	0	Serine	acetyltransferase,	N-terminal
Fzo_mitofusin	PF04799.13	gi|227826870|ref|YP_002828649.1|	-	0.35	10.4	11.0	0.28	10.7	3.0	2.3	1	1	1	2	2	2	0	fzo-like	conserved	region
ING	PF12998.7	gi|227826870|ref|YP_002828649.1|	-	0.37	11.4	8.1	0.18	12.4	3.6	2.6	2	1	1	3	3	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
DUF641	PF04859.12	gi|227826870|ref|YP_002828649.1|	-	0.39	11.1	12.5	45	4.4	12.6	2.6	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
DUF5593	PF18007.1	gi|227826870|ref|YP_002828649.1|	-	0.4	11.4	4.5	4.3	8.1	0.9	2.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF5593)
DUF4298	PF14131.6	gi|227826870|ref|YP_002828649.1|	-	0.43	10.6	10.5	6.5	6.8	0.5	3.7	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4298)
GARP	PF16731.5	gi|227826870|ref|YP_002828649.1|	-	0.45	10.2	12.2	0.58	9.8	8.7	2.2	1	1	1	2	2	2	0	Glutamic	acid/alanine-rich	protein	of	Trypanosoma
DUF2400	PF09674.10	gi|227826870|ref|YP_002828649.1|	-	0.51	10.3	4.3	0.96	9.4	3.2	2.0	1	1	1	2	2	1	0	Protein	of	unknown	function	(DUF2400)
AATF-Che1	PF13339.6	gi|227826870|ref|YP_002828649.1|	-	0.51	11.0	7.8	4.4	8.0	7.7	2.3	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
Mod_r	PF07200.13	gi|227826870|ref|YP_002828649.1|	-	0.53	10.4	13.4	6.2	6.9	13.1	2.2	1	1	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
Syntaxin-6_N	PF09177.11	gi|227826870|ref|YP_002828649.1|	-	0.54	10.8	8.7	4.9	7.8	8.7	2.3	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
LZ3wCH	PF18517.1	gi|227826870|ref|YP_002828649.1|	-	0.6	10.3	4.8	1.2	9.2	0.0	3.2	3	1	0	3	3	2	0	Leucine	zipper	with	capping	helix	domain
CEP209_CC5	PF16574.5	gi|227826870|ref|YP_002828649.1|	-	0.64	10.2	14.7	1.5	8.9	3.7	2.9	2	1	1	3	3	2	0	Coiled-coil	region	of	centrosome	protein	CE290
Med9	PF07544.13	gi|227826870|ref|YP_002828649.1|	-	0.66	10.1	13.0	3.6	7.7	7.1	2.7	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
T3SSipB	PF16535.5	gi|227826870|ref|YP_002828649.1|	-	0.69	10.4	11.0	2.5	8.6	11.1	1.8	1	1	0	1	1	1	0	Type	III	cell	invasion	protein	SipB
USP8_interact	PF08941.10	gi|227826870|ref|YP_002828649.1|	-	0.73	9.6	8.5	12	5.7	8.6	2.3	1	1	0	1	1	1	0	USP8	interacting
DASH_Duo1	PF08651.10	gi|227826870|ref|YP_002828649.1|	-	0.74	9.6	9.0	7.7	6.4	3.2	3.3	1	1	2	3	3	3	0	DASH	complex	subunit	Duo1
Peptidase_S46	PF10459.9	gi|227826870|ref|YP_002828649.1|	-	0.75	8.4	9.3	0.99	8.0	9.3	1.2	1	0	0	1	1	1	0	Peptidase	S46
zf-C4H2	PF10146.9	gi|227826870|ref|YP_002828649.1|	-	0.8	10.0	13.3	1.3	9.3	13.3	1.6	1	1	0	1	1	1	0	Zinc	finger-containing	protein
YkyA	PF10368.9	gi|227826870|ref|YP_002828649.1|	-	0.85	9.3	21.9	0.089	12.5	13.2	2.9	2	1	1	3	3	2	0	Putative	cell-wall	binding	lipoprotein
Glutaredoxin2_C	PF04399.13	gi|227826870|ref|YP_002828649.1|	-	0.88	9.4	5.7	2.2	8.1	0.7	2.8	1	1	2	3	3	2	0	Glutaredoxin	2,	C	terminal	domain
Tweety	PF04906.13	gi|227826870|ref|YP_002828649.1|	-	0.89	8.1	6.7	0.42	9.2	3.6	1.7	1	1	1	2	2	2	0	Tweety
KxDL	PF10241.9	gi|227826870|ref|YP_002828649.1|	-	0.91	9.9	10.0	2.1	8.7	5.0	2.7	1	1	2	3	3	3	0	Uncharacterized	conserved	protein
L27	PF02828.16	gi|227826870|ref|YP_002828649.1|	-	0.93	9.3	3.0	13	5.6	0.0	2.8	3	0	0	3	3	2	0	L27	domain
COG2	PF06148.11	gi|227826870|ref|YP_002828649.1|	-	0.98	9.5	11.7	1.5	8.9	3.1	2.8	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF2570	PF10828.8	gi|227826870|ref|YP_002828649.1|	-	1.1	9.1	14.5	0.97	9.3	8.5	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2570)
Rx_N	PF18052.1	gi|227826870|ref|YP_002828649.1|	-	1.1	9.6	10.0	28	5.0	4.2	3.2	1	1	0	2	2	2	0	Rx	N-terminal	domain
TMF_TATA_bd	PF12325.8	gi|227826870|ref|YP_002828649.1|	-	1.1	9.5	13.1	1.4	9.2	7.6	2.2	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DHR10	PF18595.1	gi|227826870|ref|YP_002828649.1|	-	1.1	9.3	15.8	3.3	7.8	9.0	2.2	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
CC2-LZ	PF16516.5	gi|227826870|ref|YP_002828649.1|	-	1.2	9.6	12.8	2.2	8.7	7.1	2.9	1	1	1	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
CENP-Q	PF13094.6	gi|227826870|ref|YP_002828649.1|	-	1.3	9.2	11.5	18	5.5	11.5	2.4	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
EMP24_GP25L	PF01105.24	gi|227826870|ref|YP_002828649.1|	-	1.3	9.0	7.4	18	5.2	7.5	2.5	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
CLZ	PF16526.5	gi|227826870|ref|YP_002828649.1|	-	1.3	9.4	9.9	22	5.5	0.2	3.4	1	1	2	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
P4Ha_N	PF08336.11	gi|227826870|ref|YP_002828649.1|	-	1.4	9.0	9.4	2.4	8.2	2.5	3.1	1	1	2	3	3	3	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
Rootletin	PF15035.6	gi|227826870|ref|YP_002828649.1|	-	1.4	8.9	9.7	3.4	7.7	9.7	1.7	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
DivIVA	PF05103.13	gi|227826870|ref|YP_002828649.1|	-	1.5	8.9	15.1	8.4	6.5	15.1	2.2	1	1	0	1	1	1	0	DivIVA	protein
HAUS-augmin3	PF14932.6	gi|227826870|ref|YP_002828649.1|	-	1.6	8.2	12.9	3	7.3	12.9	1.4	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
TEX13	PF15186.6	gi|227826870|ref|YP_002828649.1|	-	1.7	8.4	10.2	4.4	7.0	5.5	2.6	1	1	2	3	3	3	0	Testis-expressed	sequence	13	protein	family
DUF2203	PF09969.9	gi|227826870|ref|YP_002828649.1|	-	1.7	9.4	10.9	62	4.3	10.9	2.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
DUF3450	PF11932.8	gi|227826870|ref|YP_002828649.1|	-	1.8	7.8	14.6	8.3	5.6	14.4	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Cytochrom_C552	PF02335.15	gi|227826870|ref|YP_002828649.1|	-	1.8	7.4	6.3	2.4	7.0	6.3	1.1	1	0	0	1	1	1	0	Cytochrome	c552
WXG100	PF06013.12	gi|227826870|ref|YP_002828649.1|	-	1.8	8.9	7.2	6.3	7.1	5.2	2.8	1	1	1	2	2	2	0	Proteins	of	100	residues	with	WXG
Lectin_N	PF03954.14	gi|227826870|ref|YP_002828649.1|	-	1.9	8.2	7.5	3.1	7.5	0.5	2.4	1	1	1	2	2	2	0	Hepatic	lectin,	N-terminal	domain
GIT_CC	PF16559.5	gi|227826870|ref|YP_002828649.1|	-	2	8.4	10.3	11	6.0	0.3	3.5	1	1	2	3	3	3	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
Trimer_CC	PF08954.11	gi|227826870|ref|YP_002828649.1|	-	2.4	7.8	11.1	4.8	6.8	2.5	3.5	1	1	2	3	3	3	0	Trimerisation	motif
YabA	PF06156.13	gi|227826870|ref|YP_002828649.1|	-	2.7	8.7	10.3	1.9e+02	2.7	10.3	2.6	1	1	0	1	1	1	0	Initiation	control	protein	YabA
KELK	PF15796.5	gi|227826870|ref|YP_002828649.1|	-	3.2	8.3	12.0	1.2e+02	3.2	11.5	2.6	1	1	0	1	1	1	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
DUF4559	PF15112.6	gi|227826870|ref|YP_002828649.1|	-	3.7	7.2	10.5	9.3	5.8	0.8	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4559)
DUF2968	PF11180.8	gi|227826870|ref|YP_002828649.1|	-	3.9	7.1	14.8	1.6	8.4	7.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2968)
LPP	PF04728.13	gi|227826870|ref|YP_002828649.1|	-	4.2	7.8	13.0	4.9	7.6	0.8	3.9	1	1	3	4	4	4	0	Lipoprotein	leucine-zipper
APG6_N	PF17675.1	gi|227826870|ref|YP_002828649.1|	-	4.3	7.9	12.2	16	6.0	12.2	1.9	1	1	0	1	1	1	0	Apg6	coiled-coil	region
Seryl_tRNA_N	PF02403.22	gi|227826870|ref|YP_002828649.1|	-	5.1	7.4	19.0	0.64	10.3	12.9	2.5	2	1	1	3	3	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Goodbye	PF17109.5	gi|227826870|ref|YP_002828649.1|	-	5.1	7.6	7.2	16	6.0	1.9	2.2	1	1	1	2	2	2	0	fungal	STAND	N-terminal	Goodbye	domain
HIP1_clath_bdg	PF16515.5	gi|227826870|ref|YP_002828649.1|	-	5.3	7.7	14.4	8.6	7.0	2.3	2.4	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
OmpH	PF03938.14	gi|227826870|ref|YP_002828649.1|	-	6.3	7.1	22.8	0.37	11.1	15.9	2.5	2	2	0	2	2	1	0	Outer	membrane	protein	(OmpH-like)
GLTP	PF08718.11	gi|227826870|ref|YP_002828649.1|	-	7	6.9	7.2	1.7e+02	2.5	7.2	2.4	1	1	0	1	1	1	0	Glycolipid	transfer	protein	(GLTP)
TRAF_BIRC3_bd	PF16673.5	gi|227826870|ref|YP_002828649.1|	-	7.1	6.5	12.5	3.8	7.4	1.4	3.2	1	1	2	3	3	3	0	TNF	receptor-associated	factor	BIRC3	binding	domain
SYCE1	PF15233.6	gi|227826870|ref|YP_002828649.1|	-	8.2	6.5	19.6	1.6	8.8	14.6	2.2	2	1	1	3	3	2	0	Synaptonemal	complex	central	element	protein	1
betaPIX_CC	PF16523.5	gi|227826870|ref|YP_002828649.1|	-	9	6.2	15.3	0.42	10.5	1.5	3.7	2	1	2	4	4	2	0	betaPIX	coiled	coil
TSNAXIP1_N	PF15739.5	gi|227826870|ref|YP_002828649.1|	-	9.6	6.6	13.1	4.3	7.8	4.1	2.5	1	1	1	2	2	2	0	Translin-associated	factor	X-interacting	N-terminus
Metallophos_2	PF12850.7	gi|227826871|ref|YP_002828650.1|	-	9.4e-09	35.7	0.0	2.1e-08	34.5	0.0	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|227826871|ref|YP_002828650.1|	-	3.1e-05	24.6	1.0	0.00044	20.8	1.0	2.2	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
MIP	PF00230.20	gi|227826872|ref|YP_002828651.1|	-	5.2e-41	140.8	6.7	6.8e-41	140.5	6.7	1.1	1	0	0	1	1	1	1	Major	intrinsic	protein
FGGY_N	PF00370.21	gi|227826873|ref|YP_002828652.1|	-	3.3e-79	265.9	0.0	5e-79	265.3	0.0	1.3	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|227826873|ref|YP_002828652.1|	-	4.5e-61	206.0	0.1	8.5e-61	205.1	0.1	1.5	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
S1_2	PF13509.6	gi|227826874|ref|YP_002828653.1|	-	0.061	13.4	0.0	1.6	8.9	0.0	2.2	1	1	1	2	2	2	0	S1	domain
DUF4861	PF16153.5	gi|227826874|ref|YP_002828653.1|	-	0.18	10.7	0.0	0.22	10.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4861)
SHNi-TPR	PF10516.9	gi|227826876|ref|YP_002828655.1|	-	0.006	16.0	2.0	0.006	16.0	2.0	4.0	4	0	0	4	4	4	1	SHNi-TPR
UVR	PF02151.19	gi|227826876|ref|YP_002828655.1|	-	0.019	14.7	4.8	0.66	9.8	0.9	4.7	4	0	0	4	4	4	0	UvrB/uvrC	motif
TPR_16	PF13432.6	gi|227826876|ref|YP_002828655.1|	-	0.038	14.6	5.5	10	6.9	0.0	5.2	4	1	1	5	5	5	0	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|227826876|ref|YP_002828655.1|	-	0.23	11.3	16.2	1.5	8.8	0.6	6.3	6	0	0	6	6	6	0	Tetratricopeptide	repeat
HEPN	PF05168.14	gi|227826876|ref|YP_002828655.1|	-	0.5	10.5	17.4	3.4	7.8	2.1	5.8	5	0	0	5	5	5	0	HEPN	domain
MazE_antitoxin	PF04014.18	gi|227826877|ref|YP_002828656.1|	-	0.0038	17.1	0.0	0.0051	16.7	0.0	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DoxA	PF07680.11	gi|227826878|ref|YP_002828657.1|	-	0.023	14.6	0.5	0.056	13.3	0.1	1.7	1	1	1	2	2	2	0	TQO	small	subunit	DoxA
Tox-URI2	PF15653.6	gi|227826878|ref|YP_002828657.1|	-	0.067	13.5	1.1	0.25	11.6	0.0	2.0	2	0	0	2	2	2	0	URI	fold	toxin	2
RHH_1	PF01402.21	gi|227826879|ref|YP_002828658.1|	-	3.5e-06	26.7	0.7	4.2e-06	26.5	0.7	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
EF-G-binding_N	PF07299.11	gi|227826879|ref|YP_002828658.1|	-	0.023	15.2	0.5	0.025	15.1	0.5	1.0	1	0	0	1	1	1	0	Elongation	factor	G-binding	protein,	N-terminal
YmgB	PF10798.8	gi|227826879|ref|YP_002828658.1|	-	0.033	14.0	0.2	0.04	13.7	0.2	1.2	1	0	0	1	1	1	0	Biofilm	development	protein	YmgB/AriR
PSK_trans_fac	PF07704.11	gi|227826879|ref|YP_002828658.1|	-	0.043	14.6	0.0	0.049	14.4	0.0	1.1	1	0	0	1	1	1	0	Rv0623-like	transcription	factor
HTH_6	PF01418.17	gi|227826879|ref|YP_002828658.1|	-	0.046	13.7	0.0	0.067	13.2	0.0	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_DeoR	PF08220.12	gi|227826879|ref|YP_002828658.1|	-	0.094	12.5	0.1	0.17	11.6	0.1	1.6	1	1	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Myb_DNA-binding	PF00249.31	gi|227826879|ref|YP_002828658.1|	-	0.25	11.6	2.1	3.1	8.1	0.6	2.1	2	0	0	2	2	2	0	Myb-like	DNA-binding	domain
Sulfolobus_pRN	PF05584.11	gi|227826881|ref|YP_002828660.1|	-	9.7e-34	115.2	6.3	1.1e-33	115.0	6.3	1.0	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
HxlR	PF01638.17	gi|227826881|ref|YP_002828660.1|	-	0.0022	17.8	0.3	0.0027	17.5	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
ArsR	PF09824.9	gi|227826881|ref|YP_002828660.1|	-	0.0099	15.5	0.1	0.011	15.3	0.1	1.1	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
MarR	PF01047.22	gi|227826881|ref|YP_002828660.1|	-	0.069	13.1	0.3	0.099	12.6	0.3	1.3	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|227826882|ref|YP_002828661.1|	-	0.001	19.3	0.1	0.0015	18.8	0.1	1.4	1	1	0	1	1	1	1	Transcriptional	regulator
tRNA-synt_1d	PF00750.19	gi|227826882|ref|YP_002828661.1|	-	0.0081	15.2	0.2	0.0091	15.0	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
HTH_12	PF08461.10	gi|227826882|ref|YP_002828661.1|	-	0.028	14.4	0.2	0.039	13.9	0.2	1.3	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
FUR	PF01475.19	gi|227826882|ref|YP_002828661.1|	-	0.031	14.4	0.7	0.039	14.1	0.7	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_Tnp_Tc3_2	PF01498.18	gi|227826882|ref|YP_002828661.1|	-	0.051	13.8	0.0	0.069	13.4	0.0	1.3	1	0	0	1	1	1	0	Transposase
DDE_Tnp_ISAZ013	PF07592.11	gi|227826882|ref|YP_002828661.1|	-	0.081	11.9	0.1	0.088	11.8	0.1	1.1	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
MarR_2	PF12802.7	gi|227826882|ref|YP_002828661.1|	-	0.1	12.5	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF3731	PF12531.8	gi|227826882|ref|YP_002828661.1|	-	0.12	12.2	0.0	0.13	12.1	0.0	1.0	1	0	0	1	1	1	0	DNA-K	related	protein
Phage_integrase	PF00589.22	gi|227826883|ref|YP_002828662.1|	-	5.2e-16	58.9	0.4	4.8e-15	55.8	0.1	2.2	2	0	0	2	2	2	1	Phage	integrase	family
Phage_integr_3	PF16795.5	gi|227826883|ref|YP_002828662.1|	-	2.7e-07	30.7	11.1	4.6e-06	26.6	3.3	3.7	2	2	0	2	2	2	1	Archaeal	phage	integrase
HTH_23	PF13384.6	gi|227826883|ref|YP_002828662.1|	-	2.4e-05	24.0	0.1	6.8e-05	22.5	0.1	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|227826883|ref|YP_002828662.1|	-	0.00014	21.7	0.3	0.0028	17.6	0.0	3.1	2	1	1	3	3	3	1	HTH	domain
HTH_36	PF13730.6	gi|227826883|ref|YP_002828662.1|	-	0.00047	20.1	1.0	0.0029	17.5	0.1	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|227826883|ref|YP_002828662.1|	-	0.0005	19.8	0.1	0.0018	18.0	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_22	PF13309.6	gi|227826883|ref|YP_002828662.1|	-	0.00064	19.7	0.9	0.0026	17.8	0.0	2.6	3	0	0	3	3	1	1	HTH	domain
HTH_7	PF02796.15	gi|227826883|ref|YP_002828662.1|	-	0.00075	19.5	0.1	0.0022	18.0	0.1	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_3	PF01381.22	gi|227826883|ref|YP_002828662.1|	-	0.00075	19.5	0.9	0.028	14.5	0.0	3.7	3	1	1	4	4	4	1	Helix-turn-helix
HTH_28	PF13518.6	gi|227826883|ref|YP_002828662.1|	-	0.0012	18.9	0.2	0.0029	17.7	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|227826883|ref|YP_002828662.1|	-	0.0015	18.5	0.0	0.0031	17.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_17	PF12728.7	gi|227826883|ref|YP_002828662.1|	-	0.0042	17.2	0.2	0.75	10.0	0.1	3.3	3	0	0	3	3	2	1	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|227826883|ref|YP_002828662.1|	-	0.0051	16.6	0.0	0.017	14.9	0.0	2.0	1	0	0	1	1	1	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
DUF4286	PF14114.6	gi|227826883|ref|YP_002828662.1|	-	0.021	15.3	1.6	6.9	7.2	0.0	4.1	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4286)
HTH_40	PF14493.6	gi|227826883|ref|YP_002828662.1|	-	0.023	15.1	5.4	2.3	8.7	0.0	4.1	2	2	1	3	3	3	0	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|227826883|ref|YP_002828662.1|	-	0.023	14.6	0.1	0.054	13.4	0.1	1.7	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
TetR_N	PF00440.23	gi|227826883|ref|YP_002828662.1|	-	0.023	14.5	0.0	0.048	13.5	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_26	PF13443.6	gi|227826883|ref|YP_002828662.1|	-	0.044	14.2	0.0	2	8.9	0.0	3.0	3	0	0	3	3	3	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_Tnp_1_2	PF13022.6	gi|227826883|ref|YP_002828662.1|	-	0.082	13.1	0.0	0.082	13.1	0.0	2.4	3	1	1	4	4	4	0	Helix-turn-helix	of	insertion	element	transposase
Phage_AlpA	PF05930.12	gi|227826883|ref|YP_002828662.1|	-	0.093	12.6	0.0	0.26	11.2	0.0	1.7	1	0	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
HTH_24	PF13412.6	gi|227826883|ref|YP_002828662.1|	-	0.14	11.7	0.4	0.43	10.2	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF2089	PF09862.9	gi|227826883|ref|YP_002828662.1|	-	0.15	12.1	0.9	1.1	9.3	0.2	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2089)
TetR_C_8	PF14278.6	gi|227826883|ref|YP_002828662.1|	-	0.23	11.6	5.5	0.26	11.4	0.4	3.5	3	1	1	4	4	4	0	Transcriptional	regulator	C-terminal	region
HTH_46	PF15977.5	gi|227826883|ref|YP_002828662.1|	-	0.36	10.9	3.9	15	5.7	1.1	3.0	3	0	0	3	3	2	0	Winged	helix-turn-helix	DNA	binding
Acyl-CoA_dh_1	PF00441.24	gi|227826884|ref|YP_002828663.1|	-	8.2e-34	117.0	0.1	1.3e-33	116.3	0.1	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227826884|ref|YP_002828663.1|	-	2.3e-16	59.8	0.0	4.1e-16	59.0	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
AidB_N	PF18158.1	gi|227826884|ref|YP_002828663.1|	-	2e-09	37.5	0.0	3.7e-09	36.7	0.0	1.3	1	0	0	1	1	1	1	Adaptive	response	protein	AidB	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|227826884|ref|YP_002828663.1|	-	1.4e-07	31.9	0.0	2.8e-07	30.9	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AMP-binding	PF00501.28	gi|227826885|ref|YP_002828664.1|	-	5.1e-71	239.5	0.0	5.9e-71	239.3	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227826885|ref|YP_002828664.1|	-	6.8e-14	52.6	0.0	1.2e-13	51.9	0.0	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding_C_2	PF14535.6	gi|227826886|ref|YP_002828665.1|	-	1e-13	51.4	0.0	1.7e-13	50.7	0.0	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|227826886|ref|YP_002828665.1|	-	0.00031	19.5	0.0	0.00058	18.6	0.0	1.3	1	1	0	1	1	1	1	AMP-binding	enzyme
CbiZ	PF01955.18	gi|227826887|ref|YP_002828666.1|	-	2.2e-18	67.1	0.0	3e-18	66.6	0.0	1.2	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
MFS_1	PF07690.16	gi|227826888|ref|YP_002828667.1|	-	5.4e-21	74.9	68.6	4.7e-20	71.8	37.7	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227826888|ref|YP_002828667.1|	-	2.4e-13	49.8	30.3	1.6e-12	47.0	30.3	2.1	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
Ycf1	PF05758.12	gi|227826889|ref|YP_002828668.1|	-	0.69	7.7	2.4	0.87	7.4	2.4	1.1	1	0	0	1	1	1	0	Ycf1
DUF1648	PF07853.11	gi|227826890|ref|YP_002828669.1|	-	0.0011	18.6	0.4	0.0011	18.6	0.4	3.6	4	0	0	4	4	4	1	Protein	of	unknown	function	(DUF1648)
ThrE	PF06738.12	gi|227826890|ref|YP_002828669.1|	-	0.0045	16.4	0.3	0.0045	16.4	0.3	2.7	2	1	1	4	4	4	1	Putative	threonine/serine	exporter
Rab5ip	PF07019.12	gi|227826890|ref|YP_002828669.1|	-	0.018	15.6	0.6	0.018	15.6	0.6	4.7	3	2	2	5	5	5	0	Rab5-interacting	protein	(Rab5ip)
GntR	PF00392.21	gi|227826891|ref|YP_002828670.1|	-	1e-14	53.9	0.0	1.7e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_41	PF14502.6	gi|227826891|ref|YP_002828670.1|	-	0.016	14.9	0.0	0.073	12.8	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|227826891|ref|YP_002828670.1|	-	0.037	14.0	0.0	0.057	13.4	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|227826891|ref|YP_002828670.1|	-	0.1	12.4	0.0	0.23	11.3	0.0	1.6	1	1	1	2	2	2	0	LexA	DNA	binding	domain
DUF3431	PF11913.8	gi|227826892|ref|YP_002828671.1|	-	0.066	13.0	0.3	0.079	12.7	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3431)
Mem_trans	PF03547.18	gi|227826893|ref|YP_002828672.1|	-	0.0051	15.3	28.8	0.015	13.7	8.0	2.7	2	1	1	3	3	3	2	Membrane	transport	protein
TMEM131_like	PF12371.8	gi|227826894|ref|YP_002828673.1|	-	0.053	13.8	0.1	0.12	12.6	0.0	1.8	2	0	0	2	2	2	0	Transmembrane	protein	131-like
DUF3876	PF12992.7	gi|227826895|ref|YP_002828674.1|	-	0.8	9.8	6.8	7	6.8	0.0	4.2	5	1	1	6	6	6	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3876)
DUF973	PF06157.11	gi|227826896|ref|YP_002828675.1|	-	1.7e-84	283.5	49.8	1.9e-84	283.4	49.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
Fer4_18	PF13746.6	gi|227826897|ref|YP_002828676.1|	-	0.00097	19.3	7.1	0.00097	19.3	7.1	1.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227826897|ref|YP_002828676.1|	-	0.0065	16.6	10.4	0.015	15.5	10.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227826897|ref|YP_002828676.1|	-	0.036	14.5	6.9	1.3	9.5	0.8	2.6	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227826897|ref|YP_002828676.1|	-	0.043	14.4	1.3	0.043	14.4	1.3	2.6	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227826897|ref|YP_002828676.1|	-	0.067	13.3	14.2	0.31	11.2	14.3	1.9	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227826897|ref|YP_002828676.1|	-	1.1	9.8	8.2	1.8	9.2	0.5	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227826897|ref|YP_002828676.1|	-	1.2	9.1	9.1	0.11	12.3	3.8	2.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Molybdopterin	PF00384.22	gi|227826898|ref|YP_002828677.1|	-	2.8e-34	118.8	0.0	6.8e-34	117.6	0.0	1.6	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molybdop_Fe4S4	PF04879.16	gi|227826898|ref|YP_002828677.1|	-	6.6e-13	48.4	0.1	1.2e-12	47.6	0.1	1.4	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Molydop_binding	PF01568.21	gi|227826898|ref|YP_002828677.1|	-	3.5e-08	33.4	0.0	8.4e-08	32.2	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
TAT_signal	PF10518.9	gi|227826898|ref|YP_002828677.1|	-	4.4e-06	26.3	3.3	7.5e-06	25.6	3.3	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RNR_N	PF08343.10	gi|227826898|ref|YP_002828677.1|	-	0.041	13.9	1.4	0.15	12.1	1.4	2.0	1	0	0	1	1	1	0	Ribonucleotide	reductase	N-terminal
UCR_Fe-S_N	PF10399.9	gi|227826898|ref|YP_002828677.1|	-	0.052	12.9	0.3	0.12	11.8	0.3	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Phasin_2	PF09361.10	gi|227826898|ref|YP_002828677.1|	-	1.4	9.3	3.9	0.81	10.0	0.4	2.2	2	1	0	2	2	2	0	Phasin	protein
Fer4_7	PF12838.7	gi|227826899|ref|YP_002828678.1|	-	3.1e-15	56.5	26.3	1.7e-08	34.9	7.7	3.0	2	2	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227826899|ref|YP_002828678.1|	-	1.3e-12	47.6	23.7	8.4e-09	35.4	4.6	2.9	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|227826899|ref|YP_002828678.1|	-	3.7e-12	46.2	20.6	1.6e-09	37.7	5.9	2.8	2	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227826899|ref|YP_002828678.1|	-	4.5e-11	42.1	36.0	6.6e-08	32.1	3.7	6.0	5	1	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|227826899|ref|YP_002828678.1|	-	9.2e-11	41.7	21.5	1.5e-05	25.1	9.9	3.3	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227826899|ref|YP_002828678.1|	-	3.9e-09	36.2	35.8	7.7e-05	22.6	3.2	4.9	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227826899|ref|YP_002828678.1|	-	5.8e-08	32.4	37.0	9.3e-05	22.3	2.0	4.6	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|227826899|ref|YP_002828678.1|	-	4.9e-07	30.2	41.7	0.037	15.0	5.5	4.4	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227826899|ref|YP_002828678.1|	-	4e-05	24.0	19.5	0.0021	18.4	4.5	2.9	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227826899|ref|YP_002828678.1|	-	9e-05	22.5	8.2	9e-05	22.5	8.2	3.5	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227826899|ref|YP_002828678.1|	-	0.0008	19.9	23.3	0.016	15.8	5.1	3.5	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227826899|ref|YP_002828678.1|	-	0.016	15.7	36.7	0.028	14.9	2.1	5.0	4	2	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227826899|ref|YP_002828678.1|	-	0.016	15.4	13.8	0.059	13.6	3.2	3.3	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227826899|ref|YP_002828678.1|	-	0.019	15.9	28.1	1.3	10.0	7.8	4.0	3	1	1	4	4	4	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.6	gi|227826899|ref|YP_002828678.1|	-	0.08	13.5	0.3	0.08	13.5	0.3	4.6	5	0	0	5	5	5	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|227826899|ref|YP_002828678.1|	-	0.088	13.6	1.1	0.088	13.6	1.1	3.5	4	1	0	4	4	3	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|227826899|ref|YP_002828678.1|	-	7.5	7.5	19.3	7	7.6	1.3	3.5	2	1	0	3	3	3	0	4Fe-4S	dicluster	domain
NrfD	PF03916.14	gi|227826900|ref|YP_002828679.1|	-	1.5e-66	225.2	16.7	1.5e-66	225.2	16.7	1.4	2	0	0	2	2	2	1	Polysulphide	reductase,	NrfD
DUF2839	PF10999.8	gi|227826900|ref|YP_002828679.1|	-	3	8.3	0.0	3	8.3	0.0	3.6	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2839)
Fer4	PF00037.27	gi|227826901|ref|YP_002828680.1|	-	2.8e-17	61.7	39.5	2.5e-06	27.1	2.8	5.1	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227826901|ref|YP_002828680.1|	-	7.9e-17	61.6	33.1	2.2e-09	37.8	11.6	3.8	3	2	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227826901|ref|YP_002828680.1|	-	1e-14	55.2	31.0	0.00043	21.2	2.7	5.1	5	0	0	5	5	5	4	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|227826901|ref|YP_002828680.1|	-	1.7e-13	50.5	52.4	2.7e-08	33.8	10.8	4.4	2	2	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227826901|ref|YP_002828680.1|	-	2e-13	50.2	34.3	9.8e-08	32.0	11.0	3.5	4	0	0	4	4	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227826901|ref|YP_002828680.1|	-	3.3e-11	43.2	35.7	1.9e-06	28.0	8.7	3.7	3	1	2	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227826901|ref|YP_002828680.1|	-	3e-10	39.7	50.0	0.00015	21.6	7.4	5.0	6	0	0	6	6	4	4	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227826901|ref|YP_002828680.1|	-	5.7e-10	38.7	38.5	6.6e-05	22.8	2.7	5.3	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|227826901|ref|YP_002828680.1|	-	4.3e-09	37.0	13.0	0.003	18.3	0.5	4.2	4	0	0	4	4	4	3	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|227826901|ref|YP_002828680.1|	-	7.5e-07	29.5	28.1	0.017	15.5	2.7	4.6	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|227826901|ref|YP_002828680.1|	-	2.6e-05	24.8	47.7	0.067	14.2	3.6	5.2	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|227826901|ref|YP_002828680.1|	-	5e-05	23.8	26.4	0.0061	17.1	1.1	4.8	4	0	0	4	4	4	3	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|227826901|ref|YP_002828680.1|	-	0.0003	21.1	47.7	0.009	16.5	1.9	6.0	6	0	0	6	6	6	3	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227826901|ref|YP_002828680.1|	-	0.001	19.3	28.2	0.28	11.4	2.9	4.5	2	2	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227826901|ref|YP_002828680.1|	-	0.032	14.8	39.2	0.31	11.6	0.2	5.0	5	2	2	8	8	6	0	4Fe-4S	dicluster	domain
Nitrate_red_del	PF02613.15	gi|227826902|ref|YP_002828681.1|	-	1.7e-19	70.2	0.0	2.2e-19	69.8	0.0	1.1	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Cupin_2	PF07883.11	gi|227826903|ref|YP_002828682.1|	-	2.7e-15	55.8	0.0	3.4e-15	55.5	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|227826903|ref|YP_002828682.1|	-	5.2e-07	29.6	0.0	7.1e-07	29.2	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|227826903|ref|YP_002828682.1|	-	3.6e-06	26.6	0.0	4.3e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	Cupin
MannoseP_isomer	PF01050.18	gi|227826903|ref|YP_002828682.1|	-	4.5e-06	26.6	0.1	5.3e-06	26.4	0.1	1.2	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Ectoine_synth	PF06339.12	gi|227826903|ref|YP_002828682.1|	-	6.4e-06	26.4	0.2	7.8e-06	26.1	0.2	1.1	1	0	0	1	1	1	1	Ectoine	synthase
Cupin_3	PF05899.12	gi|227826903|ref|YP_002828682.1|	-	0.00029	20.5	0.0	0.00049	19.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
DUF4437	PF14499.6	gi|227826903|ref|YP_002828682.1|	-	0.0013	17.9	0.0	0.0016	17.6	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4437)
Asp_Arg_Hydrox	PF05118.15	gi|227826903|ref|YP_002828682.1|	-	0.0024	17.7	0.0	0.003	17.4	0.0	1.2	1	0	0	1	1	1	1	Aspartyl/Asparaginyl	beta-hydroxylase
Cu-oxidase_2	PF07731.14	gi|227826903|ref|YP_002828682.1|	-	0.01	15.6	0.0	0.014	15.2	0.0	1.3	1	1	0	1	1	1	0	Multicopper	oxidase
Cupin_6	PF12852.7	gi|227826903|ref|YP_002828682.1|	-	0.03	14.1	0.0	0.035	13.8	0.0	1.1	1	0	0	1	1	1	0	Cupin
DMSP_lyase	PF16867.5	gi|227826903|ref|YP_002828682.1|	-	0.049	13.3	0.0	0.07	12.8	0.0	1.2	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
Cupin_7	PF12973.7	gi|227826903|ref|YP_002828682.1|	-	0.049	13.5	0.0	0.057	13.3	0.0	1.3	1	0	0	1	1	1	0	ChrR	Cupin-like	domain
DUF2584	PF10763.9	gi|227826903|ref|YP_002828682.1|	-	0.052	13.7	0.1	0.21	11.8	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2584)
Lactamase_B	PF00753.27	gi|227826906|ref|YP_002828685.1|	-	4.8e-28	98.5	0.5	6.3e-28	98.1	0.5	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227826906|ref|YP_002828685.1|	-	0.0001	21.9	0.0	0.00013	21.6	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Radical_SAM	PF04055.21	gi|227826907|ref|YP_002828686.1|	-	2.1e-20	73.8	0.9	9.3e-19	68.4	0.1	2.4	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227826907|ref|YP_002828686.1|	-	1e-09	38.8	0.3	4.4e-09	36.7	0.0	2.1	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|227826907|ref|YP_002828686.1|	-	0.00054	20.1	0.1	0.002	18.2	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|227826907|ref|YP_002828686.1|	-	0.035	14.6	0.7	0.098	13.2	0.7	1.8	1	0	0	1	1	1	0	Iron-sulfur	cluster-binding	domain
YwpF	PF14183.6	gi|227826907|ref|YP_002828686.1|	-	0.052	13.5	1.0	0.68	9.9	0.2	2.6	3	0	0	3	3	3	0	YwpF-like	protein
PrpR_N	PF06506.11	gi|227826907|ref|YP_002828686.1|	-	0.13	11.8	0.0	0.46	10.1	0.1	1.8	2	0	0	2	2	2	0	Propionate	catabolism	activator
AAA_14	PF13173.6	gi|227826908|ref|YP_002828687.1|	-	5e-24	84.8	1.4	2.3e-23	82.7	0.0	2.4	3	0	0	3	3	3	1	AAA	domain
DUF4143	PF13635.6	gi|227826908|ref|YP_002828687.1|	-	1.1e-06	28.8	0.3	2e-06	28.0	0.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
AAA_19	PF13245.6	gi|227826908|ref|YP_002828687.1|	-	0.0015	18.9	0.3	0.44	10.9	0.1	3.6	2	1	0	2	2	2	1	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|227826908|ref|YP_002828687.1|	-	0.009	15.4	0.0	0.017	14.5	0.0	1.4	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
AAA_16	PF13191.6	gi|227826908|ref|YP_002828687.1|	-	0.022	15.2	0.0	0.071	13.5	0.0	1.9	2	1	0	2	2	2	0	AAA	ATPase	domain
HTH_11	PF08279.12	gi|227826908|ref|YP_002828687.1|	-	0.025	14.5	0.1	0.062	13.3	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
AAA_24	PF13479.6	gi|227826908|ref|YP_002828687.1|	-	0.03	14.1	0.0	0.066	12.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_2	PF07724.14	gi|227826908|ref|YP_002828687.1|	-	0.033	14.3	0.0	0.082	13.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.6	gi|227826908|ref|YP_002828687.1|	-	0.036	14.3	0.0	0.11	12.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|227826908|ref|YP_002828687.1|	-	0.039	14.4	0.0	0.098	13.1	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|227826908|ref|YP_002828687.1|	-	0.067	13.1	0.0	0.067	13.1	0.0	3.3	1	1	2	3	3	3	0	ATPase	domain	predominantly	from	Archaea
Transposase_20	PF02371.16	gi|227826909|ref|YP_002828688.1|	-	1.4e-22	79.8	0.0	2.6e-22	78.9	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|227826909|ref|YP_002828688.1|	-	5.1e-08	32.9	0.1	1.6e-07	31.3	0.0	1.9	2	1	0	2	2	2	1	Transposase
AIM24	PF01987.17	gi|227826910|ref|YP_002828689.1|	-	6e-55	186.2	0.2	6.9e-55	186.0	0.2	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
DDE_Tnp_IS240	PF13610.6	gi|227826911|ref|YP_002828690.1|	-	0.00012	22.3	0.4	0.00016	21.9	0.4	1.2	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227826911|ref|YP_002828690.1|	-	0.0015	18.0	0.1	0.0025	17.3	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
Peptidase_S9	PF00326.21	gi|227826912|ref|YP_002828691.1|	-	6.5e-41	140.1	0.0	1.1e-40	139.4	0.0	1.4	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|227826912|ref|YP_002828691.1|	-	2e-10	40.7	0.1	7.5e-06	25.8	0.2	2.4	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
DLH	PF01738.18	gi|227826912|ref|YP_002828691.1|	-	8.1e-10	38.6	0.0	2.8e-09	36.8	0.0	2.0	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|227826912|ref|YP_002828691.1|	-	6.3e-07	28.9	0.0	0.025	13.9	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
BAAT_C	PF08840.11	gi|227826912|ref|YP_002828691.1|	-	9.2e-07	29.0	0.0	0.00013	22.0	0.0	2.4	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S15	PF02129.18	gi|227826912|ref|YP_002828691.1|	-	2.4e-05	24.1	0.0	0.012	15.2	0.0	2.4	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Esterase	PF00756.20	gi|227826912|ref|YP_002828691.1|	-	0.0015	18.2	0.0	0.0023	17.6	0.0	1.3	1	0	0	1	1	1	1	Putative	esterase
Abhydrolase_6	PF12697.7	gi|227826912|ref|YP_002828691.1|	-	0.0015	19.2	0.0	0.011	16.4	0.0	1.8	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
AXE1	PF05448.12	gi|227826912|ref|YP_002828691.1|	-	0.0028	16.4	0.0	0.01	14.5	0.0	1.8	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_4	PF08386.10	gi|227826912|ref|YP_002828691.1|	-	0.012	15.8	0.0	0.023	14.8	0.0	1.4	1	0	0	1	1	1	0	TAP-like	protein
Abhydrolase_3	PF07859.13	gi|227826912|ref|YP_002828691.1|	-	0.013	15.3	0.0	0.21	11.4	0.0	2.3	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
UPF0227	PF05728.12	gi|227826912|ref|YP_002828691.1|	-	0.018	15.0	0.0	0.043	13.7	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
DUF2048	PF09752.9	gi|227826912|ref|YP_002828691.1|	-	0.031	13.4	0.0	0.053	12.6	0.0	1.2	1	0	0	1	1	1	0	Abhydrolase	domain	containing	18
Peptidase_S28	PF05577.12	gi|227826912|ref|YP_002828691.1|	-	0.1	11.4	0.0	0.17	10.6	0.0	1.3	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
Hydantoinase_B	PF02538.14	gi|227826913|ref|YP_002828692.1|	-	3e-162	540.6	0.0	3.5e-162	540.4	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|227826914|ref|YP_002828693.1|	-	2.8e-101	338.6	0.4	3.6e-100	335.0	0.0	2.3	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|227826914|ref|YP_002828693.1|	-	7.6e-56	188.6	0.3	3.8e-55	186.4	0.2	2.1	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
BcrAD_BadFG	PF01869.20	gi|227826914|ref|YP_002828693.1|	-	0.0089	15.6	0.0	2.2	7.7	0.0	2.4	2	1	0	2	2	2	2	BadF/BadG/BcrA/BcrD	ATPase	family
MutL	PF13941.6	gi|227826914|ref|YP_002828693.1|	-	0.05	12.2	0.2	4.1	5.9	0.1	2.3	2	0	0	2	2	2	0	MutL	protein
FtsA	PF14450.6	gi|227826914|ref|YP_002828693.1|	-	2.5	8.6	3.9	2.4	8.6	0.1	2.9	4	1	0	4	4	4	0	Cell	division	protein	FtsA
HTH_AsnC-type	PF13404.6	gi|227826915|ref|YP_002828694.1|	-	7e-12	45.0	0.6	1.2e-11	44.2	0.6	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|227826915|ref|YP_002828694.1|	-	2.7e-07	30.0	1.5	4.4e-07	29.4	0.9	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|227826915|ref|YP_002828694.1|	-	0.036	14.0	0.6	0.38	10.7	0.1	2.2	2	0	0	2	2	2	0	HTH	domain
AsnC_trans_reg	PF01037.21	gi|227826915|ref|YP_002828694.1|	-	0.08	12.9	0.1	0.13	12.3	0.1	1.4	1	0	0	1	1	1	0	Lrp/AsnC	ligand	binding	domain
Transp_cyt_pur	PF02133.15	gi|227826916|ref|YP_002828695.1|	-	6e-18	64.9	46.9	1.1e-17	64.0	46.9	1.5	1	1	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
CAML	PF14963.6	gi|227826917|ref|YP_002828696.1|	-	0.4	10.8	1.2	0.56	10.3	0.5	1.5	2	0	0	2	2	2	0	Calcium	signal-modulating	cyclophilin	ligand
DUF917	PF06032.12	gi|227826918|ref|YP_002828697.1|	-	1.7e-113	379.0	0.1	2e-113	378.8	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF917)
Hydant_A_N	PF05378.13	gi|227826919|ref|YP_002828698.1|	-	2.6e-39	134.8	2.5	5.4e-38	130.5	0.3	2.7	3	0	0	3	3	3	1	Hydantoinase/oxoprolinase	N-terminal	region
Hydantoinase_A	PF01968.18	gi|227826919|ref|YP_002828698.1|	-	3.7e-24	85.5	7.9	5.4e-22	78.4	0.5	3.9	4	0	0	4	4	4	2	Hydantoinase/oxoprolinase
MutL	PF13941.6	gi|227826919|ref|YP_002828698.1|	-	1.2e-07	30.7	1.9	0.003	16.2	0.3	2.8	3	0	0	3	3	3	2	MutL	protein
BcrAD_BadFG	PF01869.20	gi|227826919|ref|YP_002828698.1|	-	0.00017	21.2	4.9	0.0002	21.0	0.5	2.8	2	1	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
FtsA	PF14450.6	gi|227826919|ref|YP_002828698.1|	-	0.0026	18.2	6.2	1.2	9.6	0.2	3.6	3	2	0	3	3	3	2	Cell	division	protein	FtsA
ROK	PF00480.20	gi|227826919|ref|YP_002828698.1|	-	0.0079	15.7	0.2	0.025	14.0	0.2	1.9	1	0	0	1	1	1	1	ROK	family
DEDD_Tnp_IS110	PF01548.17	gi|227826919|ref|YP_002828698.1|	-	0.017	15.0	0.1	0.069	13.0	0.1	2.0	2	0	0	2	2	2	0	Transposase
StbA	PF06406.11	gi|227826919|ref|YP_002828698.1|	-	0.29	10.3	2.3	4.1	6.6	0.0	2.9	3	0	0	3	3	3	0	StbA	protein
DUF917	PF06032.12	gi|227826920|ref|YP_002828699.1|	-	1.5e-87	293.7	0.0	1.8e-87	293.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF917)
HTH_10	PF04967.12	gi|227826922|ref|YP_002828701.1|	-	5.4e-21	74.1	0.1	8.2e-21	73.6	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
DUF134	PF02001.16	gi|227826922|ref|YP_002828701.1|	-	0.0006	20.3	0.0	0.0014	19.1	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF134
HTH_24	PF13412.6	gi|227826922|ref|YP_002828701.1|	-	0.01	15.4	1.4	0.1	12.1	0.0	2.9	3	1	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
DUF5113	PF17140.4	gi|227826922|ref|YP_002828701.1|	-	0.046	13.5	1.0	0.083	12.7	1.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5113)
W2	PF02020.18	gi|227826922|ref|YP_002828701.1|	-	0.14	12.4	0.1	0.77	9.9	0.0	2.1	2	0	0	2	2	2	0	eIF4-gamma/eIF5/eIF2-epsilon
Sugar_tr	PF00083.24	gi|227826923|ref|YP_002828702.1|	-	1.5e-33	116.3	29.6	2.1e-33	115.9	29.6	1.2	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227826923|ref|YP_002828702.1|	-	3.7e-33	114.9	73.8	6.6e-28	97.6	43.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MR_MLE_C	PF13378.6	gi|227826924|ref|YP_002828703.1|	-	1.2e-45	155.7	0.0	1.5e-45	155.4	0.0	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227826924|ref|YP_002828703.1|	-	6e-05	23.2	0.0	9.7e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
ADH_N	PF08240.12	gi|227826925|ref|YP_002828704.1|	-	5e-29	100.4	0.4	9e-29	99.6	0.4	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227826925|ref|YP_002828704.1|	-	8.1e-18	64.7	0.1	1.7e-17	63.6	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227826925|ref|YP_002828704.1|	-	1.9e-12	48.3	0.0	4e-12	47.3	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AAA_14	PF13173.6	gi|227826926|ref|YP_002828705.1|	-	5.9e-06	26.3	0.0	1.1e-05	25.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Fe_dep_repress	PF01325.19	gi|227826926|ref|YP_002828705.1|	-	0.00038	20.6	0.0	0.0011	19.2	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|227826926|ref|YP_002828705.1|	-	0.00057	19.7	0.1	0.0016	18.3	0.1	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
ATPase_2	PF01637.18	gi|227826926|ref|YP_002828705.1|	-	0.00059	19.8	1.1	0.22	11.4	0.2	2.9	1	1	1	2	2	2	2	ATPase	domain	predominantly	from	Archaea
MarR	PF01047.22	gi|227826926|ref|YP_002828705.1|	-	0.0013	18.6	0.1	0.0037	17.2	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HrcA_DNA-bdg	PF03444.15	gi|227826926|ref|YP_002828705.1|	-	0.012	15.3	0.0	0.033	13.8	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
AAA_24	PF13479.6	gi|227826926|ref|YP_002828705.1|	-	0.015	15.1	0.0	0.07	12.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
HTH_27	PF13463.6	gi|227826926|ref|YP_002828705.1|	-	0.022	15.2	0.8	0.3	11.6	0.0	3.1	4	0	0	4	4	4	0	Winged	helix	DNA-binding	domain
AAA	PF00004.29	gi|227826926|ref|YP_002828705.1|	-	0.028	14.9	0.1	0.069	13.6	0.1	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|227826926|ref|YP_002828705.1|	-	0.082	13.2	0.0	0.86	9.9	0.0	2.1	1	1	2	3	3	3	0	AAA	domain
DUF4143	PF13635.6	gi|227826926|ref|YP_002828705.1|	-	0.083	13.0	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4143)
HSDR_N_2	PF13588.6	gi|227826926|ref|YP_002828705.1|	-	0.11	12.5	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
AAA_22	PF13401.6	gi|227826926|ref|YP_002828705.1|	-	0.14	12.5	0.3	12	6.1	0.4	2.5	1	1	1	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|227826926|ref|YP_002828705.1|	-	0.15	11.8	0.0	0.23	11.2	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
NurA	PF09376.10	gi|227826927|ref|YP_002828706.1|	-	1.3e-16	61.0	5.4	1.9e-16	60.5	5.4	1.2	1	0	0	1	1	1	1	NurA	domain
DUF87	PF01935.17	gi|227826928|ref|YP_002828707.1|	-	2.5e-13	50.7	0.0	7.1e-13	49.2	0.0	1.9	2	1	0	2	2	2	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|227826928|ref|YP_002828707.1|	-	3.8e-07	29.4	0.0	6.6e-07	28.6	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA	PF00004.29	gi|227826928|ref|YP_002828707.1|	-	1.2e-06	29.0	0.3	0.0041	17.5	0.1	3.0	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|227826928|ref|YP_002828707.1|	-	3.6e-06	26.5	0.1	7.7e-06	25.4	0.1	1.5	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
AAA_10	PF12846.7	gi|227826928|ref|YP_002828707.1|	-	1.7e-05	24.0	0.2	0.66	8.8	0.0	3.3	3	0	0	3	3	3	2	AAA-like	domain
DUF853	PF05872.12	gi|227826928|ref|YP_002828707.1|	-	2.8e-05	22.9	0.1	0.073	11.7	0.0	2.3	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_22	PF13401.6	gi|227826928|ref|YP_002828707.1|	-	0.00011	22.5	0.0	0.0084	16.4	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|227826928|ref|YP_002828707.1|	-	0.00011	22.7	0.0	0.00027	21.5	0.0	1.7	1	0	0	1	1	1	1	ABC	transporter
ResIII	PF04851.15	gi|227826928|ref|YP_002828707.1|	-	0.00091	19.3	0.3	0.98	9.4	0.0	2.4	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
Zot	PF05707.12	gi|227826928|ref|YP_002828707.1|	-	0.0024	17.5	0.4	0.0047	16.6	0.1	1.6	2	0	0	2	2	1	1	Zonular	occludens	toxin	(Zot)
T2SSE	PF00437.20	gi|227826928|ref|YP_002828707.1|	-	0.0045	16.1	0.0	0.0074	15.4	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_14	PF13173.6	gi|227826928|ref|YP_002828707.1|	-	0.0046	17.0	0.1	0.23	11.5	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
cobW	PF02492.19	gi|227826928|ref|YP_002828707.1|	-	0.0058	16.2	0.1	0.01	15.5	0.1	1.3	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|227826928|ref|YP_002828707.1|	-	0.0077	15.9	1.1	0.015	15.0	0.2	1.9	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.6	gi|227826928|ref|YP_002828707.1|	-	0.013	15.3	0.0	0.03	14.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF2075	PF09848.9	gi|227826928|ref|YP_002828707.1|	-	0.014	14.6	0.0	1.2	8.3	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
ATPase_2	PF01637.18	gi|227826928|ref|YP_002828707.1|	-	0.016	15.1	0.1	0.071	13.0	0.0	2.0	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_23	PF13476.6	gi|227826928|ref|YP_002828707.1|	-	0.019	15.4	2.3	0.023	15.2	0.1	2.3	3	0	0	3	3	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|227826928|ref|YP_002828707.1|	-	0.021	14.6	0.0	0.039	13.7	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
NACHT	PF05729.12	gi|227826928|ref|YP_002828707.1|	-	0.021	14.7	0.0	0.046	13.6	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
DEAD	PF00270.29	gi|227826928|ref|YP_002828707.1|	-	0.021	14.6	0.0	4.6	7.0	0.0	2.7	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
DUF3584	PF12128.8	gi|227826928|ref|YP_002828707.1|	-	0.024	12.2	0.5	0.04	11.4	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_18	PF13238.6	gi|227826928|ref|YP_002828707.1|	-	0.028	15.0	0.1	0.73	10.4	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|227826928|ref|YP_002828707.1|	-	0.032	13.7	0.0	0.063	12.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
G-alpha	PF00503.20	gi|227826928|ref|YP_002828707.1|	-	0.037	13.2	0.1	0.077	12.1	0.1	1.5	1	0	0	1	1	1	0	G-protein	alpha	subunit
RsgA_GTPase	PF03193.16	gi|227826928|ref|YP_002828707.1|	-	0.04	13.8	0.1	0.098	12.6	0.1	1.6	1	0	0	1	1	1	0	RsgA	GTPase
AAA_24	PF13479.6	gi|227826928|ref|YP_002828707.1|	-	0.05	13.3	0.0	0.26	11.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.12	gi|227826928|ref|YP_002828707.1|	-	0.069	12.9	0.1	0.32	10.7	0.0	2.1	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
TMF_DNA_bd	PF12329.8	gi|227826928|ref|YP_002828707.1|	-	0.098	12.7	0.1	0.22	11.5	0.1	1.6	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
AAA_25	PF13481.6	gi|227826928|ref|YP_002828707.1|	-	0.13	11.8	0.7	6.7	6.2	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|227826928|ref|YP_002828707.1|	-	0.14	12.5	0.2	0.46	10.8	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|227826928|ref|YP_002828707.1|	-	0.19	12.1	0.0	0.5	10.7	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
Peptidase_M20	PF01546.28	gi|227826930|ref|YP_002828709.1|	-	2e-37	128.9	0.0	1.2e-36	126.4	0.0	1.8	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|227826930|ref|YP_002828709.1|	-	1.5e-18	66.7	0.0	3.5e-18	65.5	0.0	1.7	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|227826930|ref|YP_002828709.1|	-	0.028	14.1	0.0	0.046	13.4	0.0	1.3	1	0	0	1	1	1	0	Peptidase	family	M28
MFS_1	PF07690.16	gi|227826931|ref|YP_002828710.1|	-	1.2e-23	83.6	72.0	1.8e-22	79.8	46.5	2.6	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227826931|ref|YP_002828710.1|	-	1e-11	44.4	37.3	3.2e-11	42.8	9.5	2.2	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
Peptidase_S58	PF03576.14	gi|227826932|ref|YP_002828711.1|	-	5e-33	114.9	1.4	6.4e-33	114.5	1.4	1.0	1	0	0	1	1	1	1	Peptidase	family	S58
adh_short_C2	PF13561.6	gi|227826933|ref|YP_002828712.1|	-	3.5e-60	203.5	0.1	4.3e-60	203.2	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227826933|ref|YP_002828712.1|	-	3e-42	144.3	0.5	4.1e-42	143.9	0.5	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227826933|ref|YP_002828712.1|	-	1.7e-10	41.1	0.2	4.4e-10	39.8	0.2	1.6	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|227826933|ref|YP_002828712.1|	-	7.1e-05	22.4	1.4	0.0021	17.6	1.4	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
DUF1776	PF08643.10	gi|227826933|ref|YP_002828712.1|	-	0.00042	19.8	0.0	0.0005	19.5	0.0	1.2	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
THF_DHG_CYH_C	PF02882.19	gi|227826933|ref|YP_002828712.1|	-	0.0014	18.0	0.1	0.0042	16.4	0.0	1.7	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
2-Hacid_dh_C	PF02826.19	gi|227826933|ref|YP_002828712.1|	-	0.0043	16.4	0.0	0.0071	15.7	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|227826933|ref|YP_002828712.1|	-	0.0064	16.6	0.5	0.019	15.0	0.3	1.7	1	1	1	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
PIN	PF01850.21	gi|227826934|ref|YP_002828713.1|	-	2.4e-11	44.2	0.1	3.1e-11	43.9	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|227826934|ref|YP_002828713.1|	-	0.00052	20.6	0.2	0.00065	20.2	0.2	1.2	1	1	0	1	1	1	1	PIN	domain
DUF4411	PF14367.6	gi|227826934|ref|YP_002828713.1|	-	0.12	12.3	0.0	0.15	11.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4411)
VAPB_antitox	PF02697.14	gi|227826935|ref|YP_002828714.1|	-	0.00088	20.0	1.0	0.00099	19.8	1.0	1.1	1	0	0	1	1	1	1	Putative	antitoxin
DUF1040	PF06288.13	gi|227826935|ref|YP_002828714.1|	-	0.032	14.6	0.2	0.037	14.4	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1040)
tRNA_edit	PF04073.15	gi|227826935|ref|YP_002828714.1|	-	0.054	13.6	0.0	0.061	13.4	0.0	1.3	1	1	0	1	1	1	0	Aminoacyl-tRNA	editing	domain
BLACT_WH	PF17778.1	gi|227826935|ref|YP_002828714.1|	-	0.077	13.0	1.0	3.1	7.8	0.2	2.2	1	1	1	2	2	2	0	Beta-lactamase	associated	winged	helix	domain
Lactamase_B	PF00753.27	gi|227826936|ref|YP_002828715.1|	-	0.001	19.1	0.0	0.18	11.8	0.0	2.1	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Asp_protease_2	PF13650.6	gi|227826937|ref|YP_002828716.1|	-	1.2e-07	32.3	0.0	1.5e-07	32.0	0.0	1.2	1	0	0	1	1	1	1	Aspartyl	protease
gag-asp_proteas	PF13975.6	gi|227826937|ref|YP_002828716.1|	-	5.1e-07	30.2	0.0	7.3e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
FeoB_C	PF07664.12	gi|227826937|ref|YP_002828716.1|	-	0.068	12.9	0.0	0.25	11.1	0.0	1.9	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
RVP	PF00077.20	gi|227826937|ref|YP_002828716.1|	-	0.083	13.2	0.0	0.091	13.1	0.0	1.2	1	0	0	1	1	1	0	Retroviral	aspartyl	protease
VAPB_antitox	PF02697.14	gi|227826940|ref|YP_002828719.1|	-	1e-22	80.7	11.3	1.2e-22	80.4	11.3	1.1	1	0	0	1	1	1	1	Putative	antitoxin
Uds1	PF15456.6	gi|227826940|ref|YP_002828719.1|	-	0.023	14.9	1.3	0.028	14.6	0.8	1.4	1	1	0	1	1	1	0	Up-regulated	During	Septation
RHH_1	PF01402.21	gi|227826940|ref|YP_002828719.1|	-	0.057	13.4	4.4	2.7	8.1	0.0	2.5	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
TRCF	PF03461.15	gi|227826940|ref|YP_002828719.1|	-	0.16	12.3	3.5	0.34	11.3	0.2	2.1	1	1	0	2	2	2	0	TRCF	domain
PIN	PF01850.21	gi|227826941|ref|YP_002828720.1|	-	1.4e-11	44.9	1.2	2.9e-11	43.9	1.2	1.5	1	1	0	1	1	1	1	PIN	domain
DUF5615	PF18480.1	gi|227826941|ref|YP_002828720.1|	-	0.017	14.9	0.1	0.13	12.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5615)
DnaB	PF00772.21	gi|227826941|ref|YP_002828720.1|	-	0.038	14.1	0.3	0.093	12.8	0.1	1.7	1	1	0	1	1	1	0	DnaB-like	helicase	N	terminal	domain
PaREP1	PF05942.11	gi|227826943|ref|YP_002828722.1|	-	4.7e-22	78.1	0.1	4.7e-22	78.1	0.1	1.4	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
AAA_21	PF13304.6	gi|227826945|ref|YP_002828724.1|	-	1.8e-17	64.1	5.2	4.9e-15	56.1	5.2	2.2	1	1	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|227826945|ref|YP_002828724.1|	-	9.6e-17	61.7	7.2	2.1e-10	40.9	3.7	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|227826945|ref|YP_002828724.1|	-	2.6e-09	36.9	4.8	3.7e-08	33.1	4.8	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF2813	PF11398.8	gi|227826945|ref|YP_002828724.1|	-	1.3e-06	27.9	0.1	0.00033	20.1	0.1	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2813)
AAA_23	PF13476.6	gi|227826945|ref|YP_002828724.1|	-	3e-06	27.9	2.9	4.7e-06	27.2	2.7	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|227826945|ref|YP_002828724.1|	-	3.7e-05	24.0	0.0	0.4	11.0	0.1	2.2	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|227826945|ref|YP_002828724.1|	-	0.0044	16.2	0.0	0.35	10.0	0.0	2.1	2	0	0	2	2	2	1	NB-ARC	domain
NACHT	PF05729.12	gi|227826945|ref|YP_002828724.1|	-	0.0067	16.4	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_13	PF13166.6	gi|227826945|ref|YP_002828724.1|	-	0.0078	14.9	0.1	0.013	14.1	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227826945|ref|YP_002828724.1|	-	0.0081	15.9	0.0	0.016	14.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|227826945|ref|YP_002828724.1|	-	0.012	16.2	0.7	0.051	14.1	0.7	2.1	1	1	0	1	1	1	0	ABC	transporter
FtsK_SpoIIIE	PF01580.18	gi|227826945|ref|YP_002828724.1|	-	0.024	14.0	0.0	0.049	13.0	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA	PF00004.29	gi|227826945|ref|YP_002828724.1|	-	0.03	14.8	0.1	9.9	6.6	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Septin	PF00735.18	gi|227826945|ref|YP_002828724.1|	-	0.036	13.3	0.0	0.063	12.5	0.0	1.4	1	0	0	1	1	1	0	Septin
AAA_14	PF13173.6	gi|227826945|ref|YP_002828724.1|	-	0.044	13.8	0.2	8.2	6.5	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.23	gi|227826945|ref|YP_002828724.1|	-	0.086	12.9	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Dynamin	family
Transposase_20	PF02371.16	gi|227826946|ref|YP_002828725.1|	-	5e-24	84.4	0.0	9.4e-24	83.5	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|227826946|ref|YP_002828725.1|	-	5.7e-08	32.8	0.0	1.6e-07	31.3	0.0	1.8	1	1	0	1	1	1	1	Transposase
XTBD	PF11952.8	gi|227826946|ref|YP_002828725.1|	-	0.091	12.5	0.3	0.25	11.1	0.1	1.8	2	0	0	2	2	2	0	XRN-Two	Binding	Domain,	XTBD
Tobravirus_2B	PF05271.11	gi|227826947|ref|YP_002828726.1|	-	0.034	14.0	0.0	0.058	13.3	0.0	1.4	1	0	0	1	1	1	0	Tobravirus	2B	protein
Erf4	PF10256.9	gi|227826948|ref|YP_002828727.1|	-	0.099	12.8	2.7	5.2	7.2	0.1	2.9	1	1	1	2	2	2	0	Golgin	subfamily	A	member	7/ERF4	family
RGS	PF00615.19	gi|227826948|ref|YP_002828727.1|	-	0.2	12.0	3.8	0.46	10.8	2.2	2.4	1	1	1	2	2	2	0	Regulator	of	G	protein	signaling	domain
HEPN	PF05168.14	gi|227826948|ref|YP_002828727.1|	-	0.28	11.3	6.7	14	5.8	0.1	4.3	3	2	0	3	3	3	0	HEPN	domain
Thermopsin	PF05317.11	gi|227826949|ref|YP_002828728.1|	-	3.1e-73	246.5	25.1	3.1e-73	246.5	25.1	2.3	2	0	0	2	2	2	2	Thermopsin
RELT	PF12606.8	gi|227826950|ref|YP_002828729.1|	-	0.071	12.1	0.6	0.16	11.0	0.6	1.6	1	0	0	1	1	1	0	Tumour	necrosis	factor	receptor	superfamily	member	19
AAA_5	PF07728.14	gi|227826951|ref|YP_002828730.1|	-	5.8e-12	45.8	0.0	2.7e-09	37.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|227826951|ref|YP_002828730.1|	-	1.1e-05	25.9	0.4	8e-05	23.1	0.0	2.7	2	2	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|227826951|ref|YP_002828730.1|	-	0.00064	20.3	0.8	0.0053	17.3	0.0	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|227826951|ref|YP_002828730.1|	-	0.0015	19.0	0.0	0.0049	17.3	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|227826951|ref|YP_002828730.1|	-	0.0024	17.9	0.9	0.021	14.8	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|227826951|ref|YP_002828730.1|	-	0.0025	18.1	0.0	0.071	13.4	0.0	2.9	3	0	0	3	3	3	1	AAA	domain
RNA_helicase	PF00910.22	gi|227826951|ref|YP_002828730.1|	-	0.0094	16.3	0.0	0.66	10.4	0.0	2.8	2	1	0	2	2	2	1	RNA	helicase
IstB_IS21	PF01695.17	gi|227826951|ref|YP_002828730.1|	-	0.011	15.5	0.0	0.034	13.9	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|227826951|ref|YP_002828730.1|	-	0.013	15.6	0.0	0.027	14.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|227826951|ref|YP_002828730.1|	-	0.016	15.6	0.0	0.23	11.8	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|227826951|ref|YP_002828730.1|	-	0.02	14.7	0.1	0.12	12.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
TIP49	PF06068.13	gi|227826951|ref|YP_002828730.1|	-	0.024	13.9	0.4	0.047	12.9	0.0	1.6	2	0	0	2	2	2	0	TIP49	P-loop	domain
Hpr_kinase_C	PF07475.12	gi|227826951|ref|YP_002828730.1|	-	0.035	13.6	0.9	0.18	11.3	0.2	2.2	2	0	0	2	2	2	0	HPr	Serine	kinase	C-terminal	domain
AAA_2	PF07724.14	gi|227826951|ref|YP_002828730.1|	-	0.037	14.1	0.0	0.15	12.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
AAA_7	PF12775.7	gi|227826951|ref|YP_002828730.1|	-	0.042	13.4	0.0	0.097	12.2	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|227826951|ref|YP_002828730.1|	-	0.051	12.9	0.0	0.096	12.1	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|227826951|ref|YP_002828730.1|	-	0.071	12.9	0.0	0.18	11.5	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_25	PF13481.6	gi|227826951|ref|YP_002828730.1|	-	0.16	11.5	0.0	0.37	10.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
HTH_45	PF14947.6	gi|227826952|ref|YP_002828731.1|	-	1.8e-19	69.5	1.7	2.3e-19	69.1	1.7	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rio2_N	PF09202.11	gi|227826952|ref|YP_002828731.1|	-	0.018	15.3	0.1	0.025	14.8	0.1	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
GDP_Man_Dehyd	PF16363.5	gi|227826953|ref|YP_002828732.1|	-	8.9e-66	222.5	0.0	1.1e-65	222.2	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|227826953|ref|YP_002828732.1|	-	1.9e-61	207.6	0.0	2.6e-61	207.2	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|227826953|ref|YP_002828732.1|	-	1.7e-17	63.4	0.0	2.2e-17	63.1	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|227826953|ref|YP_002828732.1|	-	2.1e-16	59.8	0.0	2.8e-16	59.4	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|227826953|ref|YP_002828732.1|	-	3.1e-13	49.5	0.0	9.1e-13	48.0	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|227826953|ref|YP_002828732.1|	-	2e-09	37.0	1.3	9.5e-08	31.5	0.2	3.0	2	1	0	2	2	2	1	Male	sterility	protein
NmrA	PF05368.13	gi|227826953|ref|YP_002828732.1|	-	0.0098	15.5	0.0	1.8	8.0	0.0	2.2	2	0	0	2	2	2	2	NmrA-like	family
adh_short	PF00106.25	gi|227826953|ref|YP_002828732.1|	-	0.026	14.0	0.0	6.5	6.2	0.0	2.4	2	1	0	2	2	2	0	short	chain	dehydrogenase
NTP_transferase	PF00483.23	gi|227826954|ref|YP_002828733.1|	-	2.2e-50	171.6	0.0	2.8e-50	171.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|227826954|ref|YP_002828733.1|	-	3.2e-10	40.6	0.0	4.9e-10	40.0	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|227826954|ref|YP_002828733.1|	-	4.4e-06	26.2	5.4	0.0063	16.2	0.0	4.6	2	1	3	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
DUF4954	PF16314.5	gi|227826954|ref|YP_002828733.1|	-	0.00071	17.8	1.4	0.001	17.3	1.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4954)
Fucokinase	PF07959.12	gi|227826954|ref|YP_002828733.1|	-	0.0013	17.7	0.0	0.0018	17.3	0.0	1.2	1	0	0	1	1	1	1	L-fucokinase
IspD	PF01128.19	gi|227826954|ref|YP_002828733.1|	-	0.021	14.5	0.0	0.04	13.7	0.0	1.5	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|227826954|ref|YP_002828733.1|	-	0.32	10.8	8.4	0.76	9.6	0.0	4.1	5	1	0	5	5	5	0	Hexapeptide	repeat	of	succinyl-transferase
RmlD_sub_bind	PF04321.17	gi|227826955|ref|YP_002828734.1|	-	5e-55	186.6	0.0	5.6e-55	186.5	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|227826955|ref|YP_002828734.1|	-	1.4e-16	60.7	0.0	2e-16	60.2	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|227826955|ref|YP_002828734.1|	-	5.2e-09	35.9	0.0	8.3e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|227826955|ref|YP_002828734.1|	-	8e-09	35.0	0.5	5.3e-07	29.1	0.3	3.0	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Ldh_1_N	PF00056.23	gi|227826955|ref|YP_002828734.1|	-	0.014	15.5	0.0	0.05	13.7	0.0	2.0	1	1	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.24	gi|227826955|ref|YP_002828734.1|	-	0.076	13.4	0.0	0.14	12.6	0.0	1.5	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Toprim_Crpt	PF13342.6	gi|227826955|ref|YP_002828734.1|	-	0.11	12.5	0.2	9.1	6.3	0.0	2.6	2	0	0	2	2	2	0	C-terminal	repeat	of	topoisomerase
Phosphoesterase	PF04185.14	gi|227826956|ref|YP_002828735.1|	-	3.1e-68	230.6	2.7	4.2e-68	230.1	2.7	1.2	1	0	0	1	1	1	1	Phosphoesterase	family
zf-C2HC5	PF06221.13	gi|227826957|ref|YP_002828736.1|	-	0.0014	18.6	0.2	0.0021	18.0	0.2	1.2	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
RecR	PF02132.15	gi|227826957|ref|YP_002828736.1|	-	0.049	13.2	3.0	0.31	10.6	3.1	1.9	1	1	1	2	2	2	0	RecR	protein
zf-BED	PF02892.15	gi|227826957|ref|YP_002828736.1|	-	0.26	11.3	2.4	0.87	9.7	2.4	2.0	1	1	0	1	1	1	0	BED	zinc	finger
FAM76	PF16046.5	gi|227826957|ref|YP_002828736.1|	-	3.5	6.9	8.5	0.77	9.1	3.4	1.9	1	1	1	2	2	2	0	FAM76	protein
Laminin_G_3	PF13385.6	gi|227826959|ref|YP_002828738.1|	-	4.6e-11	43.1	3.6	7.5e-11	42.4	3.6	1.3	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
Glycos_transf_1	PF00534.20	gi|227826961|ref|YP_002828740.1|	-	2.3e-29	102.1	0.1	3.7e-29	101.5	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826961|ref|YP_002828740.1|	-	4.3e-22	79.0	0.0	7.6e-22	78.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227826961|ref|YP_002828740.1|	-	0.00012	22.1	0.0	0.00022	21.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|227826961|ref|YP_002828740.1|	-	0.0016	18.8	0.0	0.0033	17.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_2	PF00535.26	gi|227826962|ref|YP_002828741.1|	-	1.5e-20	73.7	0.4	3.3e-20	72.6	0.3	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826962|ref|YP_002828741.1|	-	1.8e-09	37.8	0.0	2.8e-09	37.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|227826962|ref|YP_002828741.1|	-	4.2e-05	23.1	0.0	0.00012	21.6	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|227826962|ref|YP_002828741.1|	-	6.3e-05	22.6	0.9	9.4e-05	22.0	0.9	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_1	PF00534.20	gi|227826963|ref|YP_002828742.1|	-	4.2e-14	52.4	0.2	9.5e-14	51.3	0.2	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826963|ref|YP_002828742.1|	-	3.6e-10	40.4	0.0	1.9e-09	38.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227826963|ref|YP_002828742.1|	-	0.00024	21.4	0.0	0.00054	20.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Epimerase_2	PF02350.19	gi|227826963|ref|YP_002828742.1|	-	0.027	13.4	0.0	0.038	12.9	0.0	1.1	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
DUF4346	PF14251.6	gi|227826963|ref|YP_002828742.1|	-	0.039	14.0	0.1	0.078	13.0	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4346)
Complex1_49kDa	PF00346.19	gi|227826963|ref|YP_002828742.1|	-	0.073	12.2	0.1	0.2	10.7	0.0	1.7	2	0	0	2	2	2	0	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Glycos_transf_2	PF00535.26	gi|227826964|ref|YP_002828743.1|	-	1.2e-13	51.2	0.2	2.1e-13	50.4	0.2	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826964|ref|YP_002828743.1|	-	0.00041	20.3	0.0	0.00061	19.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Bac_RepA_C	PF18008.1	gi|227826964|ref|YP_002828743.1|	-	3.4	8.1	8.9	0.45	10.9	1.4	2.9	3	0	0	3	3	3	0	Replication	initiator	protein	A	C-terminal	domain
Glycos_transf_1	PF00534.20	gi|227826965|ref|YP_002828744.1|	-	3.5e-26	91.7	0.1	7e-22	77.8	0.0	2.6	3	0	0	3	3	3	2	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826965|ref|YP_002828744.1|	-	5.7e-19	68.9	0.0	1.2e-18	67.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227826965|ref|YP_002828744.1|	-	5.2e-09	36.4	0.0	1e-08	35.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227826965|ref|YP_002828744.1|	-	0.0059	16.6	0.0	0.027	14.5	0.0	2.1	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Ctf8	PF09696.10	gi|227826966|ref|YP_002828745.1|	-	0.005	17.2	0.0	0.0098	16.2	0.0	1.5	2	0	0	2	2	2	1	Ctf8
Glycos_transf_2	PF00535.26	gi|227826967|ref|YP_002828746.1|	-	0.00016	21.5	0.1	0.00016	21.5	0.1	1.0	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glycos_transf_2	PF00535.26	gi|227826968|ref|YP_002828747.1|	-	1.5e-18	67.1	0.2	7.5e-18	64.9	0.2	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826968|ref|YP_002828747.1|	-	2.4e-10	40.7	0.0	5.5e-09	36.2	0.0	2.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|227826968|ref|YP_002828747.1|	-	3.1e-08	33.4	1.9	3.3e-07	30.0	1.8	2.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|227826968|ref|YP_002828747.1|	-	2e-05	24.6	0.9	0.00029	20.8	0.9	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.14	gi|227826968|ref|YP_002828747.1|	-	0.00012	21.7	0.0	0.00023	20.7	0.0	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_5	PF13712.6	gi|227826968|ref|YP_002828747.1|	-	0.00035	20.3	0.1	0.033	13.9	0.0	2.6	2	1	0	2	2	2	1	Glycosyltransferase	like	family
Glycos_transf_2	PF00535.26	gi|227826969|ref|YP_002828748.1|	-	1.9e-27	96.2	0.0	3.2e-27	95.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826969|ref|YP_002828748.1|	-	5.2e-12	46.2	0.0	9.8e-06	25.6	0.0	2.2	1	1	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|227826969|ref|YP_002828748.1|	-	3.8e-10	39.7	0.0	0.00014	21.5	0.0	2.2	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|227826969|ref|YP_002828748.1|	-	7.4e-07	29.3	4.0	5.2e-06	26.5	1.3	2.4	1	1	1	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|227826969|ref|YP_002828748.1|	-	5e-06	26.1	0.0	0.051	13.0	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	transferase	family	21
GlcNAc	PF11397.8	gi|227826969|ref|YP_002828748.1|	-	8e-05	22.2	0.3	0.078	12.4	0.2	2.1	1	1	1	2	2	2	2	Glycosyltransferase	(GlcNAc)
Glyco_transf_7C	PF02709.14	gi|227826969|ref|YP_002828748.1|	-	0.002	17.8	0.1	0.004	16.8	0.1	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_4	PF13704.6	gi|227826969|ref|YP_002828748.1|	-	0.011	16.3	0.0	0.045	14.3	0.0	2.0	2	1	0	2	2	2	0	Glycosyl	transferase	family	2
Glycos_transf_1	PF00534.20	gi|227826970|ref|YP_002828749.1|	-	6.5e-26	90.9	0.0	1.1e-25	90.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826970|ref|YP_002828749.1|	-	3.3e-17	63.2	0.0	7e-17	62.1	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227826970|ref|YP_002828749.1|	-	1.6e-15	57.5	0.0	3.9e-14	53.0	0.1	2.1	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.6	gi|227826970|ref|YP_002828749.1|	-	1e-05	25.6	2.7	0.00028	20.9	0.6	2.9	2	1	1	3	3	3	1	Glycosyl	transferase	4-like
Glyco_trans_4_4	PF13579.6	gi|227826970|ref|YP_002828749.1|	-	1.2e-05	25.9	0.0	2.1e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|227826970|ref|YP_002828749.1|	-	0.00023	21.5	0.0	0.00043	20.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|227826970|ref|YP_002828749.1|	-	0.073	12.8	0.9	0.26	10.9	0.9	1.8	1	1	0	1	1	1	0	Starch	synthase	catalytic	domain
DUF1357	PF07094.11	gi|227826970|ref|YP_002828749.1|	-	0.085	12.9	0.4	7.7	6.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1357)
Glycos_transf_1	PF00534.20	gi|227826971|ref|YP_002828750.1|	-	1.6e-18	66.9	0.1	2.8e-18	66.1	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826971|ref|YP_002828750.1|	-	1.3e-14	54.8	0.0	2.8e-14	53.7	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227826971|ref|YP_002828750.1|	-	0.00069	20.0	0.0	0.0018	18.6	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Peripla_BP_4	PF13407.6	gi|227826971|ref|YP_002828750.1|	-	0.018	14.6	0.1	1.5	8.3	0.1	2.6	2	1	1	3	3	3	0	Periplasmic	binding	protein	domain
Glyco_transf_4	PF13439.6	gi|227826971|ref|YP_002828750.1|	-	0.089	12.8	0.0	0.39	10.7	0.0	1.9	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
DUF3863	PF12979.7	gi|227826971|ref|YP_002828750.1|	-	0.19	10.6	0.0	0.29	9.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3863)
Polysacc_synt	PF01943.17	gi|227826972|ref|YP_002828751.1|	-	7.6e-22	78.0	23.7	7.6e-22	78.0	23.7	2.4	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|227826972|ref|YP_002828751.1|	-	3.9e-20	72.3	13.5	9.6e-20	71.0	13.5	1.6	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|227826972|ref|YP_002828751.1|	-	2.4e-06	27.7	14.5	2.4e-06	27.7	14.5	3.6	3	0	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Glycos_transf_1	PF00534.20	gi|227826973|ref|YP_002828752.1|	-	1.3e-32	112.7	0.0	2e-32	112.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826973|ref|YP_002828752.1|	-	9.1e-25	87.6	0.0	1.9e-24	86.6	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227826973|ref|YP_002828752.1|	-	6.5e-14	52.3	0.0	2.2e-13	50.6	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|227826973|ref|YP_002828752.1|	-	3.5e-10	40.1	0.0	1e-09	38.7	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Myb_DNA-bind_7	PF15963.5	gi|227826973|ref|YP_002828752.1|	-	0.065	13.1	0.1	0.17	11.8	0.1	1.7	1	0	0	1	1	1	0	Myb	DNA-binding	like
Glycos_transf_2	PF00535.26	gi|227826974|ref|YP_002828753.1|	-	5.6e-26	91.4	0.1	7.3e-26	91.0	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826974|ref|YP_002828753.1|	-	5.1e-15	56.0	0.0	7.7e-14	52.1	0.0	2.0	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|227826974|ref|YP_002828753.1|	-	5.6e-14	52.3	0.9	1e-11	44.9	0.9	2.2	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_5	PF13712.6	gi|227826974|ref|YP_002828753.1|	-	1.6e-06	28.0	0.2	6.1e-06	26.1	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	like	family
Glyco_trans_2_3	PF13632.6	gi|227826974|ref|YP_002828753.1|	-	7.1e-06	26.1	0.2	8.1e-05	22.6	0.2	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.6	gi|227826974|ref|YP_002828753.1|	-	0.00093	19.7	0.0	0.0065	17.0	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
DUF2002	PF09400.10	gi|227826974|ref|YP_002828753.1|	-	0.039	14.0	0.3	0.096	12.7	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2002)
DUF1616	PF07760.11	gi|227826975|ref|YP_002828754.1|	-	3.9e-17	62.6	0.1	5.6e-17	62.1	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF5484	PF17583.2	gi|227826975|ref|YP_002828754.1|	-	0.13	11.9	0.0	0.13	11.9	0.0	2.4	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5484)
DUF1616	PF07760.11	gi|227826976|ref|YP_002828755.1|	-	6.8e-06	25.7	11.6	8.4e-06	25.4	11.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Pox_A14	PF05767.12	gi|227826977|ref|YP_002828756.1|	-	6.2	7.0	8.2	0.75	10.0	1.0	3.2	3	0	0	3	3	3	0	Poxvirus	virion	envelope	protein	A14
Glycos_transf_1	PF00534.20	gi|227826978|ref|YP_002828757.1|	-	4.7e-24	84.8	0.0	8e-24	84.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826978|ref|YP_002828757.1|	-	2.6e-13	50.5	0.0	6.6e-13	49.2	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227826978|ref|YP_002828757.1|	-	2.6e-10	40.6	0.0	5.7e-10	39.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_2	PF00535.26	gi|227826979|ref|YP_002828758.1|	-	1.1e-30	106.7	0.0	1.6e-30	106.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826979|ref|YP_002828758.1|	-	8e-13	48.8	0.0	8.2e-12	45.5	0.0	2.0	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|227826979|ref|YP_002828758.1|	-	1.2e-09	38.1	1.6	4.3e-09	36.2	0.6	2.3	2	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_5	PF13712.6	gi|227826979|ref|YP_002828758.1|	-	9.5e-08	32.0	0.4	9.5e-07	28.7	0.1	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family
Glyco_transf_21	PF13506.6	gi|227826979|ref|YP_002828758.1|	-	7.1e-05	22.3	0.0	0.00013	21.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|227826979|ref|YP_002828758.1|	-	0.0077	16.7	0.0	0.016	15.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|227826979|ref|YP_002828758.1|	-	0.062	13.2	0.1	0.062	13.2	0.1	1.6	2	0	0	2	2	2	0	Glycosyl	transferase	family	group	2
SPC12	PF06645.13	gi|227826979|ref|YP_002828758.1|	-	0.19	11.8	0.1	0.19	11.8	0.1	2.2	2	0	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
Glycos_transf_1	PF00534.20	gi|227826980|ref|YP_002828759.1|	-	8.5e-18	64.5	0.0	1.4e-17	63.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227826980|ref|YP_002828759.1|	-	6.1e-14	52.6	0.0	2.3e-13	50.7	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227826980|ref|YP_002828759.1|	-	0.00013	22.0	0.0	0.0022	18.0	0.0	2.1	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
MASE5	PF17178.4	gi|227826982|ref|YP_002828761.1|	-	0.19	11.5	17.1	0.44	10.3	0.1	2.4	2	0	0	2	2	2	0	Membrane-associated	sensor
FDC-SP	PF15215.6	gi|227826983|ref|YP_002828762.1|	-	0.21	12.1	4.1	0.76	10.4	0.9	2.5	2	1	0	2	2	2	0	Follicular	dendritic	cell	secreted	peptide
Glycos_transf_2	PF00535.26	gi|227826985|ref|YP_002828764.1|	-	3.4e-19	69.3	0.8	1.7e-18	67.0	0.2	2.1	2	1	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|227826985|ref|YP_002828764.1|	-	2e-12	47.2	1.7	1e-06	28.5	0.4	2.2	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|227826985|ref|YP_002828764.1|	-	8.2e-08	32.7	0.2	8.2e-08	32.7	0.2	1.8	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826985|ref|YP_002828764.1|	-	9e-07	29.0	0.0	2.4e-05	24.4	0.0	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|227826985|ref|YP_002828764.1|	-	0.063	13.2	0.0	0.09	12.7	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	group	2
PRMT5_TIM	PF17285.2	gi|227826985|ref|YP_002828764.1|	-	0.1	11.7	1.9	0.19	10.9	0.4	2.0	1	1	0	2	2	2	0	PRMT5	TIM	barrel	domain
GDP_Man_Dehyd	PF16363.5	gi|227826986|ref|YP_002828765.1|	-	8e-50	170.1	0.0	2.2e-49	168.7	0.0	1.7	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|227826986|ref|YP_002828765.1|	-	3.9e-48	164.0	0.0	4.8e-48	163.7	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|227826986|ref|YP_002828765.1|	-	1.8e-09	37.0	0.0	2.9e-09	36.3	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|227826986|ref|YP_002828765.1|	-	3.7e-08	32.9	0.0	0.00093	18.4	0.0	2.3	2	0	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|227826986|ref|YP_002828765.1|	-	6e-08	32.2	0.0	0.015	14.5	0.0	3.0	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|227826986|ref|YP_002828765.1|	-	7.9e-05	21.9	0.0	9.9e-05	21.6	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
KR	PF08659.10	gi|227826986|ref|YP_002828765.1|	-	0.029	14.3	0.0	1.1	9.2	0.0	2.3	2	0	0	2	2	2	0	KR	domain
UDPG_MGDP_dh_N	PF03721.14	gi|227826987|ref|YP_002828766.1|	-	1.7e-52	177.7	2.6	2.7e-52	177.1	1.8	1.7	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|227826987|ref|YP_002828766.1|	-	1.8e-36	124.2	0.2	3.3e-36	123.4	0.2	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|227826987|ref|YP_002828766.1|	-	2.5e-25	88.9	0.1	5.4e-23	81.4	0.0	3.0	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
ApbA	PF02558.16	gi|227826987|ref|YP_002828766.1|	-	2.3e-06	27.3	0.1	5.6e-06	26.1	0.1	1.6	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|227826987|ref|YP_002828766.1|	-	4.6e-06	26.1	0.1	0.0093	15.3	0.0	2.6	2	0	0	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|227826987|ref|YP_002828766.1|	-	1.5e-05	25.5	0.7	1.3	9.7	0.1	3.9	3	2	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|227826987|ref|YP_002828766.1|	-	8.4e-05	22.8	0.0	0.0027	17.9	0.0	2.5	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|227826987|ref|YP_002828766.1|	-	9e-05	22.4	0.4	0.0024	17.8	0.2	2.7	2	1	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|227826987|ref|YP_002828766.1|	-	0.0051	17.1	4.0	0.33	11.2	0.6	3.8	3	2	0	3	3	3	1	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.23	gi|227826987|ref|YP_002828766.1|	-	0.011	15.7	0.1	0.59	10.1	0.1	3.4	3	2	1	4	4	4	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_7	PF13241.6	gi|227826987|ref|YP_002828766.1|	-	0.016	15.6	0.0	1.1	9.7	0.0	2.8	2	1	1	3	3	3	0	Putative	NAD(P)-binding
SAM_MT	PF04445.13	gi|227826987|ref|YP_002828766.1|	-	0.055	12.9	0.0	0.09	12.2	0.0	1.3	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
Rossmann-like	PF10727.9	gi|227826987|ref|YP_002828766.1|	-	0.065	13.1	0.0	0.19	11.6	0.0	1.8	2	0	0	2	2	2	0	Rossmann-like	domain
DUF2325	PF10087.9	gi|227826987|ref|YP_002828766.1|	-	0.11	12.6	0.4	0.67	10.1	0.0	2.5	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
NTP_transferase	PF00483.23	gi|227826988|ref|YP_002828767.1|	-	9.7e-22	77.7	0.0	1.2e-20	74.2	0.0	2.1	1	1	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|227826988|ref|YP_002828767.1|	-	0.00011	22.6	0.0	0.00014	22.3	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
HTH_45	PF14947.6	gi|227826989|ref|YP_002828768.1|	-	6.8e-21	74.0	4.7	9.9e-21	73.5	4.7	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
AAA_assoc_C	PF09821.9	gi|227826989|ref|YP_002828768.1|	-	0.0036	17.8	0.0	0.0052	17.3	0.0	1.5	1	1	0	1	1	1	1	C-terminal	AAA-associated	domain
Phage_RpbA	PF10789.9	gi|227826989|ref|YP_002828768.1|	-	0.019	15.0	0.4	0.031	14.3	0.3	1.4	1	1	0	1	1	1	0	Phage	RNA	polymerase	binding,	RpbA
Topoisom_bac	PF01131.20	gi|227826989|ref|YP_002828768.1|	-	0.029	13.4	0.4	0.036	13.1	0.4	1.1	1	0	0	1	1	1	0	DNA	topoisomerase
DUF2408	PF10303.9	gi|227826989|ref|YP_002828768.1|	-	0.051	14.1	0.9	0.051	14.1	0.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
GCOM2	PF15328.6	gi|227826989|ref|YP_002828768.1|	-	0.058	13.8	0.2	0.071	13.5	0.2	1.1	1	0	0	1	1	1	0	Putative	GRINL1B	complex	locus	protein	2
Glyco_trans_1_4	PF13692.6	gi|227826990|ref|YP_002828769.1|	-	4.1e-18	66.1	0.0	8e-18	65.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227826990|ref|YP_002828769.1|	-	6e-10	39.4	0.0	3.5e-09	36.9	0.0	2.1	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|227826990|ref|YP_002828769.1|	-	0.0065	16.0	0.0	0.019	14.5	0.0	1.8	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
PS_pyruv_trans	PF04230.13	gi|227826990|ref|YP_002828769.1|	-	0.011	15.6	0.2	0.55	10.1	0.1	2.2	2	0	0	2	2	2	0	Polysaccharide	pyruvyl	transferase
Glyco_trans_1_2	PF13524.6	gi|227826990|ref|YP_002828769.1|	-	0.057	13.8	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
Glycos_transf_2	PF00535.26	gi|227826991|ref|YP_002828770.1|	-	3.6e-19	69.2	0.1	5.8e-19	68.5	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227826991|ref|YP_002828770.1|	-	0.00022	21.2	0.0	0.00035	20.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|227826991|ref|YP_002828770.1|	-	0.00037	21.0	0.0	0.00097	19.6	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Zeta_toxin	PF06414.12	gi|227826991|ref|YP_002828770.1|	-	0.0039	16.5	0.0	0.34	10.2	0.0	2.2	2	0	0	2	2	2	2	Zeta	toxin
Glyco_tranf_2_2	PF10111.9	gi|227826991|ref|YP_002828770.1|	-	0.035	13.6	0.0	0.052	13.0	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
CoA_binding_2	PF13380.6	gi|227826991|ref|YP_002828770.1|	-	0.059	13.9	0.0	0.95	10.0	0.0	2.2	2	0	0	2	2	2	0	CoA	binding	domain
TFIID-18kDa	PF02269.16	gi|227826991|ref|YP_002828770.1|	-	0.15	12.1	0.2	0.32	11.1	0.1	1.6	2	0	0	2	2	2	0	Transcription	initiation	factor	IID,	18kD	subunit
Laminin_G_3	PF13385.6	gi|227826993|ref|YP_002828772.1|	-	1.7e-08	34.7	2.0	3.2e-08	33.8	2.0	1.5	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
Toxin_R_bind_N	PF07953.12	gi|227826993|ref|YP_002828772.1|	-	0.021	14.6	1.0	0.061	13.0	1.0	1.9	1	1	0	1	1	1	0	Clostridium	neurotoxin,	N-terminal	receptor	binding
Neur_chan_LBD	PF02931.23	gi|227826993|ref|YP_002828772.1|	-	0.13	11.7	0.1	0.21	11.0	0.1	1.3	1	0	0	1	1	1	0	Neurotransmitter-gated	ion-channel	ligand	binding	domain
DUF4436	PF14494.6	gi|227826994|ref|YP_002828773.1|	-	0.041	13.2	0.4	0.15	11.4	0.1	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4436)
Peptidase_S24	PF00717.23	gi|227826995|ref|YP_002828774.1|	-	9.2e-06	25.5	0.2	3.6e-05	23.6	0.2	2.0	2	0	0	2	2	2	1	Peptidase	S24-like
Ig_mannosidase	PF17753.1	gi|227826995|ref|YP_002828774.1|	-	0.15	11.9	0.0	0.28	11.0	0.0	1.4	1	0	0	1	1	1	0	Ig-fold	domain
DUF5305	PF17231.2	gi|227826996|ref|YP_002828775.1|	-	0.0021	17.5	12.6	0.022	14.2	4.2	3.7	3	1	1	4	4	4	2	Family	of	unknown	function	(DUF5305)
HTH_45	PF14947.6	gi|227826997|ref|YP_002828776.1|	-	1.4e-21	76.3	4.3	2.1e-21	75.7	4.3	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_29	PF13551.6	gi|227826997|ref|YP_002828776.1|	-	0.12	12.4	0.0	0.24	11.5	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
EF_TS	PF00889.19	gi|227826998|ref|YP_002828777.1|	-	0.0096	15.6	0.1	0.015	14.9	0.1	1.3	1	0	0	1	1	1	1	Elongation	factor	TS
HSCB_C	PF07743.13	gi|227826998|ref|YP_002828777.1|	-	0.01	16.3	0.6	0.022	15.2	0.6	1.6	1	0	0	1	1	1	0	HSCB	C-terminal	oligomerisation	domain
MTABC_N	PF16185.5	gi|227826998|ref|YP_002828777.1|	-	0.016	14.7	0.6	0.016	14.7	0.6	2.1	2	0	0	2	2	2	0	Mitochondrial	ABC-transporter	N-terminal	five	TM	region
UTP15_C	PF09384.10	gi|227826998|ref|YP_002828777.1|	-	0.045	13.4	1.3	0.07	12.8	1.3	1.3	1	0	0	1	1	1	0	UTP15	C	terminal
FA_desaturase	PF00487.24	gi|227826998|ref|YP_002828777.1|	-	0.22	11.3	0.1	0.33	10.8	0.1	1.3	1	0	0	1	1	1	0	Fatty	acid	desaturase
ICL	PF00463.21	gi|227827000|ref|YP_002828779.1|	-	1.1e-113	380.6	0.4	8.5e-61	206.0	0.0	2.1	1	1	1	2	2	2	2	Isocitrate	lyase	family
PEP_mutase	PF13714.6	gi|227827000|ref|YP_002828779.1|	-	5.8e-16	58.7	0.0	1.1e-15	57.7	0.0	1.4	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
Malate_synthase	PF01274.22	gi|227827001|ref|YP_002828780.1|	-	7.6e-43	146.6	0.0	1.3e-39	135.9	0.0	2.2	2	0	0	2	2	2	2	Malate	synthase
DUF4413	PF14372.6	gi|227827001|ref|YP_002828780.1|	-	0.31	11.4	2.1	1	9.7	0.2	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4413)
MFS_1	PF07690.16	gi|227827002|ref|YP_002828781.1|	-	2.3e-29	102.4	47.2	2.3e-29	102.4	47.2	1.9	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227827002|ref|YP_002828781.1|	-	2.3e-18	66.3	33.9	3.1e-16	59.3	12.6	2.1	1	1	0	2	2	2	2	Sugar	(and	other)	transporter
AMP-binding	PF00501.28	gi|227827003|ref|YP_002828782.1|	-	2.4e-80	270.2	0.0	3e-80	269.9	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827003|ref|YP_002828782.1|	-	4.4e-24	85.3	0.1	1.3e-23	83.8	0.1	1.9	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
CoA_transf_3	PF02515.17	gi|227827004|ref|YP_002828783.1|	-	9e-67	225.8	0.0	1.2e-66	225.3	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
DUF4387	PF14330.6	gi|227827004|ref|YP_002828783.1|	-	0.08	13.6	0.0	0.14	12.8	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4387)
DDE_Tnp_2	PF04693.12	gi|227827005|ref|YP_002828784.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227827005|ref|YP_002828784.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227827005|ref|YP_002828784.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
Rieske	PF00355.26	gi|227827006|ref|YP_002828785.1|	-	1.5e-13	50.5	0.0	1.7e-13	50.3	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|227827006|ref|YP_002828785.1|	-	4.3e-09	36.3	0.0	6.6e-09	35.6	0.0	1.2	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Ferritin	PF00210.24	gi|227827007|ref|YP_002828786.1|	-	4.8e-24	84.9	0.3	6e-24	84.6	0.3	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|227827007|ref|YP_002828786.1|	-	0.00029	21.3	0.2	0.00043	20.7	0.2	1.3	1	1	0	1	1	1	1	Rubrerythrin
DUF4439	PF14530.6	gi|227827007|ref|YP_002828786.1|	-	0.0067	17.1	0.1	1.9	9.2	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4439)
COQ7	PF03232.13	gi|227827007|ref|YP_002828786.1|	-	0.095	12.5	0.0	0.25	11.1	0.0	1.6	2	0	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Nramp	PF01566.18	gi|227827008|ref|YP_002828787.1|	-	2.3e-39	135.4	20.5	3.5e-39	134.8	20.5	1.2	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
LMF1	PF06762.14	gi|227827008|ref|YP_002828787.1|	-	0.39	9.8	5.7	0.59	9.2	5.7	1.3	1	1	0	1	1	1	0	Lipase	maturation	factor
MFS_1	PF07690.16	gi|227827009|ref|YP_002828788.1|	-	1.4e-34	119.6	35.2	8.4e-18	64.4	12.5	2.0	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|227827009|ref|YP_002828788.1|	-	0.0072	14.8	6.8	0.36	9.2	1.5	2.4	2	0	0	2	2	2	2	Transmembrane	secretion	effector
TrmB	PF01978.19	gi|227827010|ref|YP_002828789.1|	-	1.9e-24	85.3	0.8	3.3e-24	84.6	0.8	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|227827010|ref|YP_002828789.1|	-	0.00074	19.8	0.0	0.0016	18.8	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_24	PF13412.6	gi|227827010|ref|YP_002828789.1|	-	0.0013	18.2	0.5	0.0094	15.5	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|227827010|ref|YP_002828789.1|	-	0.024	14.5	0.0	0.048	13.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_47	PF16221.5	gi|227827010|ref|YP_002828789.1|	-	0.065	12.8	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	winged	helix-turn-helix
HTH_27	PF13463.6	gi|227827010|ref|YP_002828789.1|	-	0.07	13.6	0.2	0.38	11.3	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_9	PF08221.11	gi|227827010|ref|YP_002828789.1|	-	0.089	12.9	0.1	0.32	11.1	0.0	1.9	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
MarR	PF01047.22	gi|227827010|ref|YP_002828789.1|	-	0.11	12.4	0.4	0.3	11.0	0.0	1.8	2	0	0	2	2	2	0	MarR	family
Lactamase_B	PF00753.27	gi|227827011|ref|YP_002828790.1|	-	3.9e-12	46.6	1.8	1.6e-10	41.3	1.6	2.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227827011|ref|YP_002828790.1|	-	9.9e-05	21.9	0.4	0.00027	20.5	0.4	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
AhpC-TSA	PF00578.21	gi|227827012|ref|YP_002828791.1|	-	1.1e-34	119.0	0.0	1.4e-34	118.7	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|227827012|ref|YP_002828791.1|	-	5.7e-23	81.2	0.0	6.6e-23	81.1	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|227827012|ref|YP_002828791.1|	-	0.014	15.5	0.0	0.02	15.0	0.0	1.2	1	0	0	1	1	1	0	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|227827012|ref|YP_002828791.1|	-	0.035	13.6	0.0	0.038	13.5	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
AMP-binding	PF00501.28	gi|227827013|ref|YP_002828792.1|	-	1.6e-72	244.4	0.0	2.2e-72	244.0	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827013|ref|YP_002828792.1|	-	2.6e-20	73.2	0.2	4.8e-20	72.3	0.2	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|227827013|ref|YP_002828792.1|	-	2.4e-08	33.8	0.9	5.7e-08	32.6	0.3	2.0	1	1	1	2	2	2	1	Acetyl-coenzyme	A	synthetase	N-terminus
PATR	PF12951.7	gi|227827013|ref|YP_002828792.1|	-	0.12	12.5	0.1	0.33	11.1	0.1	1.7	1	0	0	1	1	1	0	Passenger-associated-transport-repeat
POR	PF01558.18	gi|227827014|ref|YP_002828793.1|	-	8.8e-32	110.6	0.9	1.1e-31	110.3	0.9	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.21	gi|227827015|ref|YP_002828794.1|	-	4.3e-22	78.5	0.0	9.5e-22	77.4	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|227827015|ref|YP_002828794.1|	-	4.5e-13	49.5	0.0	3.6e-12	46.5	0.0	2.0	2	0	0	2	2	2	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.27	gi|227827015|ref|YP_002828794.1|	-	6.9e-10	38.3	14.5	4.6e-07	29.4	5.3	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
TPP_enzyme_N	PF02776.18	gi|227827015|ref|YP_002828794.1|	-	5.3e-08	32.7	0.2	0.00012	21.8	0.0	2.3	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_7	PF12838.7	gi|227827015|ref|YP_002828794.1|	-	2.2e-06	28.2	20.7	0.00021	21.8	1.8	2.5	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227827015|ref|YP_002828794.1|	-	2.7e-06	27.4	21.8	7.6e-05	22.8	11.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Transketolase_C	PF02780.20	gi|227827015|ref|YP_002828794.1|	-	3.5e-06	26.9	0.1	4.3e-05	23.4	0.0	2.7	3	0	0	3	3	3	1	Transketolase,	C-terminal	domain
Fer4_9	PF13187.6	gi|227827015|ref|YP_002828794.1|	-	5.1e-06	26.5	10.1	1.1e-05	25.5	10.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227827015|ref|YP_002828794.1|	-	5.1e-06	26.3	17.9	0.0017	18.4	2.6	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|227827015|ref|YP_002828794.1|	-	6.4e-06	26.0	20.8	3.9e-05	23.5	4.5	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227827015|ref|YP_002828794.1|	-	2.4e-05	24.3	11.2	7e-05	22.9	10.9	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227827015|ref|YP_002828794.1|	-	0.00018	22.0	4.0	0.023	15.2	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227827015|ref|YP_002828794.1|	-	0.0003	21.7	9.7	0.00052	20.9	1.0	2.8	3	0	0	3	3	2	1	4Fe-4S	double	cluster	binding	domain
DXP_synthase_N	PF13292.6	gi|227827015|ref|YP_002828794.1|	-	0.0032	16.7	0.3	0.052	12.7	0.3	2.1	1	1	1	2	2	2	1	1-deoxy-D-xylulose-5-phosphate	synthase
Fer4_3	PF12798.7	gi|227827015|ref|YP_002828794.1|	-	0.017	16.1	5.5	0.017	16.1	5.5	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227827015|ref|YP_002828794.1|	-	0.018	15.5	10.1	0.3	11.6	2.3	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227827015|ref|YP_002828794.1|	-	0.022	15.2	16.8	0.032	14.7	3.9	2.5	1	1	1	2	2	2	0	4Fe-4S	binding	domain
PFOR_II	PF17147.4	gi|227827015|ref|YP_002828794.1|	-	0.03	14.6	0.0	0.07	13.4	0.0	1.6	1	0	0	1	1	1	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Fer4_13	PF13370.6	gi|227827015|ref|YP_002828794.1|	-	0.04	14.4	10.8	0.45	11.1	2.5	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|227827015|ref|YP_002828794.1|	-	0.069	14.0	5.2	0.13	13.1	0.6	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227827015|ref|YP_002828794.1|	-	0.093	13.5	10.0	0.61	10.9	1.8	2.6	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
DUF4416	PF14385.6	gi|227827016|ref|YP_002828795.1|	-	0.016	15.1	0.1	0.016	15.1	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4416)
DUF35_N	PF12172.8	gi|227827018|ref|YP_002828797.1|	-	1e-11	44.5	0.8	1.5e-11	43.9	0.1	1.7	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|227827018|ref|YP_002828797.1|	-	7.1e-07	29.1	0.0	1.5e-06	28.1	0.0	1.5	2	0	0	2	2	2	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DZR	PF12773.7	gi|227827018|ref|YP_002828797.1|	-	0.039	14.0	0.1	0.059	13.4	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF35_N	PF12172.8	gi|227827019|ref|YP_002828798.1|	-	2.2e-09	37.0	0.3	3.8e-09	36.3	0.3	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|227827019|ref|YP_002828798.1|	-	0.00024	21.0	0.1	0.00043	20.2	0.1	1.4	1	1	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
Cytochrom_c3_2	PF14537.6	gi|227827019|ref|YP_002828798.1|	-	0.058	13.9	0.1	0.1	13.1	0.1	1.4	1	0	0	1	1	1	0	Cytochrome	c3
Thiolase_N	PF00108.23	gi|227827020|ref|YP_002828799.1|	-	4.9e-11	42.5	0.1	1.1e-09	38.0	0.1	2.5	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227827020|ref|YP_002828799.1|	-	0.00023	20.8	0.0	0.76	9.4	0.0	2.6	2	0	0	2	2	2	2	Thiolase,	C-terminal	domain
Peptidase_M22	PF00814.25	gi|227827020|ref|YP_002828799.1|	-	0.15	11.7	0.0	0.35	10.5	0.0	1.6	1	0	0	1	1	1	0	Glycoprotease	family
Thiolase_C	PF02803.18	gi|227827021|ref|YP_002828800.1|	-	0.007	16.0	0.0	0.018	14.7	0.0	1.7	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Acyl-CoA_dh_1	PF00441.24	gi|227827022|ref|YP_002828801.1|	-	5.6e-43	146.7	0.3	9.9e-43	145.9	0.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227827022|ref|YP_002828801.1|	-	8.6e-22	77.2	0.1	1.4e-21	76.5	0.1	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|227827022|ref|YP_002828801.1|	-	2.1e-16	60.6	0.0	7.4e-16	58.8	0.0	2.0	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|227827022|ref|YP_002828801.1|	-	2.5e-14	53.7	0.0	1.6e-13	51.1	0.0	2.1	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AMP-binding	PF00501.28	gi|227827023|ref|YP_002828802.1|	-	4.1e-72	243.1	0.0	4.9e-72	242.8	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
ACAS_N	PF16177.5	gi|227827023|ref|YP_002828802.1|	-	1.4e-17	63.3	0.5	3.1e-17	62.2	0.5	1.7	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
AMP-binding_C	PF13193.6	gi|227827023|ref|YP_002828802.1|	-	2e-15	57.5	0.7	7.3e-15	55.7	0.3	2.1	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
HTH_10	PF04967.12	gi|227827024|ref|YP_002828803.1|	-	1.2e-22	79.4	0.2	2.3e-22	78.5	0.2	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GerE	PF00196.19	gi|227827024|ref|YP_002828803.1|	-	0.0079	15.7	0.3	0.13	11.8	0.0	2.6	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	luxR	family
HTH_17	PF12728.7	gi|227827024|ref|YP_002828803.1|	-	0.01	16.0	0.0	0.021	15.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|227827024|ref|YP_002828803.1|	-	0.016	15.2	0.0	0.039	14.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
CagS	PF16707.5	gi|227827024|ref|YP_002828803.1|	-	0.026	14.5	0.3	0.056	13.4	0.3	1.5	1	0	0	1	1	1	0	Cag	pathogenicity	island	protein	S	of	Helicobacter	pylori
HTH_24	PF13412.6	gi|227827024|ref|YP_002828803.1|	-	0.091	12.3	0.1	0.25	10.9	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF134	PF02001.16	gi|227827024|ref|YP_002828803.1|	-	0.14	12.7	0.0	0.32	11.6	0.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF134
Sugar_tr	PF00083.24	gi|227827025|ref|YP_002828804.1|	-	7.7e-42	143.7	26.4	1.3e-41	142.9	26.4	1.3	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227827025|ref|YP_002828804.1|	-	4.1e-29	101.6	99.3	8.1e-26	90.8	58.6	3.5	1	1	2	3	3	3	2	Major	Facilitator	Superfamily
DUF485	PF04341.12	gi|227827025|ref|YP_002828804.1|	-	0.04	13.9	0.2	0.04	13.9	0.2	4.1	4	1	1	5	5	5	0	Protein	of	unknown	function,	DUF485
Gaa1	PF04114.14	gi|227827025|ref|YP_002828804.1|	-	0.41	9.6	5.4	0.033	13.2	0.8	1.5	2	0	0	2	2	2	0	Gaa1-like,	GPI	transamidase	component
Flavin_Reduct	PF01613.18	gi|227827026|ref|YP_002828805.1|	-	5.2e-26	91.5	0.0	6.5e-26	91.2	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
DUF447	PF04289.12	gi|227827026|ref|YP_002828805.1|	-	4.8e-05	23.2	0.1	6.7e-05	22.7	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Glyoxalase	PF00903.25	gi|227827027|ref|YP_002828806.1|	-	1.9e-24	86.3	0.4	9.4e-13	48.5	0.5	2.1	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|227827027|ref|YP_002828806.1|	-	3e-12	46.8	0.0	6.6e-06	26.4	0.0	3.4	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|227827027|ref|YP_002828806.1|	-	0.0066	17.2	0.0	0.06	14.2	0.0	2.2	2	0	0	2	2	2	1	Glyoxalase-like	domain
CppA_C	PF14507.6	gi|227827027|ref|YP_002828806.1|	-	0.036	14.8	0.0	0.078	13.7	0.0	1.5	1	0	0	1	1	1	0	CppA	C-terminal
HpaB_N	PF11794.8	gi|227827028|ref|YP_002828807.1|	-	3.2e-86	289.4	0.0	4.8e-86	288.8	0.0	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.13	gi|227827028|ref|YP_002828807.1|	-	2.9e-49	166.9	0.0	4.7e-49	166.2	0.0	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
PAS_3	PF08447.12	gi|227827028|ref|YP_002828807.1|	-	0.067	13.5	0.1	0.15	12.3	0.1	1.5	1	0	0	1	1	1	0	PAS	fold
LigB	PF02900.18	gi|227827029|ref|YP_002828808.1|	-	3.6e-38	131.2	0.0	4e-38	131.0	0.0	1.0	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
Memo	PF01875.17	gi|227827029|ref|YP_002828808.1|	-	0.00049	19.3	0.0	0.0018	17.5	0.0	1.7	1	1	1	2	2	2	1	Memo-like	protein
CAP18_C	PF12153.8	gi|227827029|ref|YP_002828808.1|	-	0.25	11.3	8.4	2.7	7.9	0.9	2.7	2	0	0	2	2	2	0	LPS	binding	domain	of	CAP18	(C	terminal)
Zn_Tnp_IS1595	PF12760.7	gi|227827030|ref|YP_002828809.1|	-	3.7e-05	23.6	4.6	0.00028	20.8	0.8	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|227827030|ref|YP_002828809.1|	-	0.00038	20.3	1.8	0.024	14.6	0.3	2.1	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|227827030|ref|YP_002828809.1|	-	0.0038	16.7	4.8	0.069	12.7	0.2	2.4	2	1	0	2	2	2	1	TFIIB	zinc-binding
DUF2387	PF09526.10	gi|227827030|ref|YP_002828809.1|	-	0.013	15.6	2.9	0.77	9.9	0.2	2.2	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Zn-ribbon_8	PF09723.10	gi|227827030|ref|YP_002828809.1|	-	0.014	15.5	3.5	2.1	8.5	0.0	3.2	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|227827030|ref|YP_002828809.1|	-	0.019	14.3	2.1	2.6	7.6	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|227827030|ref|YP_002828809.1|	-	0.025	14.3	5.4	2.5	7.9	0.4	3.1	2	1	0	2	2	2	0	A2L	zinc	ribbon	domain
DZR	PF12773.7	gi|227827030|ref|YP_002828809.1|	-	0.042	13.9	5.2	1.1	9.3	5.2	2.2	1	1	0	1	1	1	0	Double	zinc	ribbon
TFIIS_C	PF01096.18	gi|227827030|ref|YP_002828809.1|	-	0.049	13.5	7.9	6.6	6.7	2.4	3.1	2	1	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-TFIIB	PF13453.6	gi|227827030|ref|YP_002828809.1|	-	0.063	12.6	1.5	0.46	9.9	0.3	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zinc_ribbon_4	PF13717.6	gi|227827030|ref|YP_002828809.1|	-	0.085	12.8	8.4	2.3	8.2	2.1	3.1	2	1	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_10	PF10058.9	gi|227827030|ref|YP_002828809.1|	-	0.085	12.6	4.2	0.72	9.6	0.8	2.4	2	1	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Nudix_N_2	PF14803.6	gi|227827030|ref|YP_002828809.1|	-	0.087	12.8	5.0	4.4	7.3	1.5	2.8	2	1	0	2	2	2	0	Nudix	N-terminal
Lar_restr_allev	PF14354.6	gi|227827030|ref|YP_002828809.1|	-	0.13	12.6	1.7	1.2	9.6	0.2	2.2	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
zf-NADH-PPase	PF09297.11	gi|227827030|ref|YP_002828809.1|	-	0.14	11.8	6.3	2.6	7.8	0.5	2.6	3	0	0	3	3	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227827030|ref|YP_002828809.1|	-	0.35	10.7	7.1	3.2	7.6	0.2	2.7	3	0	0	3	3	2	0	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|227827030|ref|YP_002828809.1|	-	0.38	10.7	7.1	1.3	9.0	0.2	2.8	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
FYVE_2	PF02318.16	gi|227827030|ref|YP_002828809.1|	-	0.48	10.6	4.0	0.3	11.3	0.5	2.0	1	1	1	2	2	2	0	FYVE-type	zinc	finger
Rubredoxin_2	PF18073.1	gi|227827030|ref|YP_002828809.1|	-	0.87	9.4	12.0	2.2	8.1	0.3	3.1	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
RNA_POL_M_15KD	PF02150.16	gi|227827030|ref|YP_002828809.1|	-	1.8	8.5	6.8	0.96	9.4	1.6	2.4	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-B_box	PF00643.24	gi|227827030|ref|YP_002828809.1|	-	1.9	8.7	7.4	14	5.9	0.7	2.7	2	1	0	2	2	2	0	B-box	zinc	finger
zf-C2H2_3	PF13878.6	gi|227827030|ref|YP_002828809.1|	-	2	8.3	7.0	2.1	8.2	0.2	3.0	3	0	0	3	3	3	0	zinc-finger	of	acetyl-transferase	ESCO
PhnA_Zn_Ribbon	PF08274.12	gi|227827030|ref|YP_002828809.1|	-	2.7	8.0	8.8	3.8	7.6	0.5	2.7	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
UPF0547	PF10571.9	gi|227827030|ref|YP_002828809.1|	-	3.4	7.8	7.4	3	8.0	0.2	2.6	3	0	0	3	3	2	0	Uncharacterised	protein	family	UPF0547
zf_UBZ	PF18439.1	gi|227827030|ref|YP_002828809.1|	-	3.7	7.2	6.6	15	5.2	0.2	2.8	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-UBR	PF02207.20	gi|227827030|ref|YP_002828809.1|	-	3.9	7.7	9.3	4.7	7.4	1.2	2.7	1	1	2	3	3	3	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
zf_CopZ	PF18423.1	gi|227827030|ref|YP_002828809.1|	-	4.3	7.4	7.8	1.2	9.1	0.1	2.5	2	1	1	3	3	3	0	Zinc	binding	domain
zf-IS66	PF13005.7	gi|227827030|ref|YP_002828809.1|	-	6	7.4	8.0	8.9	6.8	0.1	2.8	2	1	1	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
Rubredoxin	PF00301.20	gi|227827030|ref|YP_002828809.1|	-	6.1	7.0	8.1	11	6.2	0.9	3.0	3	0	0	3	3	3	0	Rubredoxin
zf-C4_ClpX	PF06689.13	gi|227827030|ref|YP_002828809.1|	-	9.6	6.2	9.6	0.58	10.1	2.1	2.6	2	1	0	2	2	2	0	ClpX	C4-type	zinc	finger
Hemerythrin	PF01814.23	gi|227827031|ref|YP_002828810.1|	-	0.00062	20.4	1.1	0.015	15.9	0.9	2.0	1	1	1	2	2	2	2	Hemerythrin	HHE	cation	binding	domain
ATLF	PF07737.11	gi|227827031|ref|YP_002828810.1|	-	0.0093	15.3	2.1	0.011	15.0	2.1	1.1	1	0	0	1	1	1	1	Anthrax	toxin	lethal	factor,	N-	and	C-terminal	domain
S1FA	PF04689.13	gi|227827032|ref|YP_002828811.1|	-	0.004	17.3	5.2	0.018	15.2	1.6	2.3	2	0	0	2	2	2	2	DNA	binding	protein	S1FA
DUF4898	PF16239.5	gi|227827033|ref|YP_002828812.1|	-	6e-27	93.4	7.7	7.6e-27	93.1	7.7	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4898)
MraZ	PF02381.18	gi|227827034|ref|YP_002828813.1|	-	0.09	12.8	0.1	0.17	11.9	0.0	1.5	2	0	0	2	2	2	0	MraZ	protein,	putative	antitoxin-like
PIN	PF01850.21	gi|227827035|ref|YP_002828814.1|	-	2.7e-09	37.6	0.4	3.4e-09	37.3	0.4	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|227827035|ref|YP_002828814.1|	-	0.039	14.7	0.1	0.052	14.3	0.1	1.3	1	1	0	1	1	1	0	PIN	domain
MFS_1	PF07690.16	gi|227827037|ref|YP_002828816.1|	-	9.6e-50	169.5	46.1	8.5e-36	123.6	28.4	2.5	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227827037|ref|YP_002828816.1|	-	1.8e-10	40.3	28.8	1.3e-08	34.1	9.7	3.2	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
OATP	PF03137.20	gi|227827037|ref|YP_002828816.1|	-	0.00096	17.6	2.8	0.00096	17.6	2.8	4.0	2	2	2	4	4	4	3	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF4898	PF16239.5	gi|227827038|ref|YP_002828817.1|	-	6.4e-29	99.7	5.4	8e-29	99.4	5.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4898)
Leuk-A4-hydro_C	PF09127.11	gi|227827038|ref|YP_002828817.1|	-	0.12	12.5	0.0	0.16	12.1	0.0	1.2	1	0	0	1	1	1	0	Leukotriene	A4	hydrolase,	C-terminal
Fic	PF02661.18	gi|227827039|ref|YP_002828818.1|	-	1.8e-08	35.1	0.1	4e-08	34.1	0.0	1.8	2	1	0	2	2	2	1	Fic/DOC	family
B56	PF01603.20	gi|227827039|ref|YP_002828818.1|	-	0.02	13.9	0.4	0.025	13.6	0.4	1.2	1	0	0	1	1	1	0	Protein	phosphatase	2A	regulatory	B	subunit	(B56	family)
SPO22	PF08631.10	gi|227827039|ref|YP_002828818.1|	-	0.032	13.7	0.1	0.037	13.5	0.1	1.0	1	0	0	1	1	1	0	Meiosis	protein	SPO22/ZIP4	like
W2	PF02020.18	gi|227827039|ref|YP_002828818.1|	-	0.039	14.1	0.2	0.13	12.4	0.0	2.0	2	1	0	2	2	2	0	eIF4-gamma/eIF5/eIF2-epsilon
Histidinol_dh	PF00815.20	gi|227827040|ref|YP_002828819.1|	-	0.16	11.0	0.1	0.15	11.1	0.1	1.0	1	0	0	1	1	1	0	Histidinol	dehydrogenase
Thermopsin	PF05317.11	gi|227827041|ref|YP_002828820.1|	-	2.4e-85	286.1	16.1	2.4e-85	286.1	16.1	3.0	3	1	0	3	3	3	1	Thermopsin
BiPBP_C	PF06832.12	gi|227827041|ref|YP_002828820.1|	-	4.9e-07	29.7	0.0	0.097	12.7	0.0	3.6	3	0	0	3	3	3	2	Penicillin-Binding	Protein	C-terminus	Family
Ig_3	PF13927.6	gi|227827041|ref|YP_002828820.1|	-	0.00048	20.7	0.3	1.1	9.9	0.0	3.6	3	0	0	3	3	3	2	Immunoglobulin	domain
PKD	PF00801.20	gi|227827041|ref|YP_002828820.1|	-	0.0015	18.3	3.6	11	6.0	0.0	5.6	5	0	0	5	5	5	1	PKD	domain
PKD_3	PF16820.5	gi|227827041|ref|YP_002828820.1|	-	0.0061	16.3	2.0	1.4	8.7	0.0	3.9	4	0	0	4	4	4	1	PKD-like	domain
DUF4625	PF15418.6	gi|227827041|ref|YP_002828820.1|	-	0.039	14.2	0.1	76	3.5	0.2	3.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4625)
BetaGal_dom4_5	PF13364.6	gi|227827041|ref|YP_002828820.1|	-	0.053	14.1	8.0	0.076	13.6	0.6	3.4	3	0	0	3	3	3	0	Beta-galactosidase	jelly	roll	domain
DUF3244	PF11589.8	gi|227827041|ref|YP_002828820.1|	-	0.057	13.5	11.0	0.98	9.5	2.9	3.9	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF3244)
Y_Y_Y	PF07495.13	gi|227827041|ref|YP_002828820.1|	-	7.3	6.6	29.6	0.52	10.3	0.3	5.6	6	1	0	6	6	6	0	Y_Y_Y	domain
ELFV_dehydrog	PF00208.21	gi|227827042|ref|YP_002828821.1|	-	1.2e-71	241.2	4.8	2e-71	240.5	4.8	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|227827042|ref|YP_002828821.1|	-	2.4e-52	176.3	0.0	4.3e-52	175.4	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|227827042|ref|YP_002828821.1|	-	0.005	16.2	0.4	0.0086	15.5	0.4	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|227827042|ref|YP_002828821.1|	-	0.017	14.4	3.6	0.029	13.7	2.2	2.2	2	1	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.6	gi|227827042|ref|YP_002828821.1|	-	0.052	14.0	0.5	0.4	11.1	0.1	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Chromo_shadow	PF01393.19	gi|227827042|ref|YP_002828821.1|	-	0.068	13.3	0.6	7.7	6.7	0.0	3.4	4	0	0	4	4	4	0	Chromo	shadow	domain
AA_permease_2	PF13520.6	gi|227827043|ref|YP_002828822.1|	-	1.2e-41	143.0	50.2	1.2e-41	143.0	50.2	2.9	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227827043|ref|YP_002828822.1|	-	4.6e-28	98.0	48.4	4.6e-28	98.0	48.4	3.0	1	1	1	3	3	3	1	Amino	acid	permease
DUF3487	PF11990.8	gi|227827043|ref|YP_002828822.1|	-	0.058	13.3	0.4	0.058	13.3	0.4	4.7	4	1	2	6	6	6	0	Protein	of	unknown	function	(DUF3487)
UL42	PF17638.2	gi|227827043|ref|YP_002828822.1|	-	1.3	9.0	4.5	1.2	9.1	0.2	3.1	3	0	0	3	3	3	0	HCMV	UL42
Transp_cyt_pur	PF02133.15	gi|227827044|ref|YP_002828823.1|	-	2.5e-83	280.3	39.2	2.9e-83	280.1	39.2	1.0	1	0	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
AMP-binding	PF00501.28	gi|227827045|ref|YP_002828824.1|	-	1.5e-76	257.8	0.0	2.2e-76	257.2	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827045|ref|YP_002828824.1|	-	5.2e-19	69.0	0.2	1.2e-18	67.9	0.2	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Amidohydro_1	PF01979.20	gi|227827046|ref|YP_002828825.1|	-	2.3e-60	204.7	0.8	2.7e-60	204.5	0.8	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|227827046|ref|YP_002828825.1|	-	1.2e-20	74.4	0.1	1.2e-12	48.1	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
AP_endonuc_2	PF01261.24	gi|227827046|ref|YP_002828825.1|	-	0.00043	19.8	0.0	0.022	14.2	0.0	2.3	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
HMGL-like	PF00682.19	gi|227827046|ref|YP_002828825.1|	-	0.0076	15.8	0.1	0.096	12.2	0.0	2.1	2	0	0	2	2	2	1	HMGL-like
MFS_1	PF07690.16	gi|227827047|ref|YP_002828826.1|	-	2.5e-36	125.3	76.0	1.6e-27	96.4	42.3	3.0	1	1	2	3	3	3	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227827047|ref|YP_002828826.1|	-	5.3e-26	91.5	37.9	2.9e-17	62.7	14.3	2.0	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
Nuc_H_symport	PF03825.16	gi|227827047|ref|YP_002828826.1|	-	0.00017	20.7	15.8	0.00032	19.8	15.8	1.5	1	0	0	1	1	1	1	Nucleoside	H+	symporter
MFS_2	PF13347.6	gi|227827047|ref|YP_002828826.1|	-	0.0014	17.3	41.2	0.0042	15.7	21.2	3.1	2	1	1	3	3	3	3	MFS/sugar	transport	protein
TNFR_16_TM	PF18422.1	gi|227827047|ref|YP_002828826.1|	-	0.01	15.8	0.2	0.058	13.4	0.2	2.4	1	0	0	1	1	1	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
YdjM	PF04307.14	gi|227827048|ref|YP_002828827.1|	-	1.7e-10	40.5	9.0	1.4e-08	34.3	9.0	3.1	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Thermopsin	PF05317.11	gi|227827049|ref|YP_002828828.1|	-	4.6e-66	222.9	17.7	4.6e-66	222.9	17.7	2.3	3	1	0	3	3	3	1	Thermopsin
RIFIN	PF02009.16	gi|227827049|ref|YP_002828828.1|	-	5	6.9	5.8	7.8	6.3	5.8	1.2	1	0	0	1	1	1	0	Rifin
DEAD	PF00270.29	gi|227827050|ref|YP_002828829.1|	-	6.8e-45	153.0	0.1	1.5e-44	151.9	0.0	1.6	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|227827050|ref|YP_002828829.1|	-	2.5e-33	114.7	0.0	1.8e-31	108.7	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|227827050|ref|YP_002828829.1|	-	8.4e-10	38.9	0.0	1.8e-09	37.8	0.0	1.6	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
T4SS-DNA_transf	PF02534.14	gi|227827050|ref|YP_002828829.1|	-	0.0073	15.1	0.0	0.018	13.9	0.0	1.7	1	1	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
AAA_22	PF13401.6	gi|227827050|ref|YP_002828829.1|	-	0.01	16.1	1.5	0.22	11.8	1.5	2.6	1	1	0	1	1	1	0	AAA	domain
SecA_DEAD	PF07517.14	gi|227827050|ref|YP_002828829.1|	-	0.061	12.6	0.2	2.8	7.2	0.0	2.3	2	0	0	2	2	2	0	SecA	DEAD-like	domain
MbeB_N	PF04837.12	gi|227827050|ref|YP_002828829.1|	-	0.074	13.4	0.2	18	5.8	0.0	2.4	2	0	0	2	2	2	0	MbeB-like,	N-term	conserved	region
Flavi_DEAD	PF07652.14	gi|227827050|ref|YP_002828829.1|	-	0.13	12.3	0.2	0.35	10.8	0.0	1.8	2	0	0	2	2	2	0	Flavivirus	DEAD	domain
AAA_19	PF13245.6	gi|227827050|ref|YP_002828829.1|	-	0.18	12.1	0.3	0.9	9.9	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
MFS_1	PF07690.16	gi|227827051|ref|YP_002828830.1|	-	2.4e-23	82.6	44.1	1.9e-15	56.7	19.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DDE_Tnp_IS240	PF13610.6	gi|227827052|ref|YP_002828831.1|	-	1.1e-06	28.9	1.2	1.9e-06	28.2	1.0	1.4	2	0	0	2	2	2	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227827052|ref|YP_002828831.1|	-	0.00073	19.1	0.3	0.0013	18.2	0.3	1.4	1	0	0	1	1	1	1	Transposase	IS66	family
CbiQ	PF02361.16	gi|227827053|ref|YP_002828832.1|	-	9.6e-11	41.7	15.7	9.6e-11	41.7	15.7	1.9	3	0	0	3	3	3	1	Cobalt	transport	protein
ABC_tran	PF00005.27	gi|227827054|ref|YP_002828833.1|	-	4.7e-50	169.7	0.4	1.8e-24	86.8	0.1	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|227827054|ref|YP_002828833.1|	-	1.1e-17	64.9	4.6	0.00041	20.3	0.1	4.3	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227827054|ref|YP_002828833.1|	-	1.1e-10	41.4	3.0	1e-05	25.1	0.1	3.2	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227827054|ref|YP_002828833.1|	-	4.1e-10	39.3	3.7	7.5e-05	22.4	0.1	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|227827054|ref|YP_002828833.1|	-	7e-08	33.2	0.4	0.002	18.7	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|227827054|ref|YP_002828833.1|	-	4.3e-07	30.5	0.1	0.0061	17.0	0.0	2.5	2	1	0	2	2	2	2	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|227827054|ref|YP_002828833.1|	-	9.5e-07	28.9	2.0	0.022	14.6	0.5	2.5	2	0	0	2	2	2	2	RsgA	GTPase
AAA_15	PF13175.6	gi|227827054|ref|YP_002828833.1|	-	3.8e-06	26.8	2.6	8.5e-05	22.4	0.9	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227827054|ref|YP_002828833.1|	-	5.2e-06	26.8	2.9	0.22	11.8	0.0	3.4	2	1	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|227827054|ref|YP_002828833.1|	-	8.7e-06	25.6	1.7	0.096	12.4	0.2	3.0	2	1	0	2	2	2	2	AAA	domain
T2SSE	PF00437.20	gi|227827054|ref|YP_002828833.1|	-	1.3e-05	24.4	0.4	0.082	12.0	0.1	2.4	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|227827054|ref|YP_002828833.1|	-	1.5e-05	25.0	1.3	0.025	14.5	0.1	2.4	2	0	0	2	2	2	2	NACHT	domain
DUF87	PF01935.17	gi|227827054|ref|YP_002828833.1|	-	8.1e-05	22.8	3.3	0.25	11.4	0.4	3.2	2	1	0	3	3	3	1	Helicase	HerA,	central	domain
NTPase_1	PF03266.15	gi|227827054|ref|YP_002828833.1|	-	9.2e-05	22.4	2.6	0.088	12.7	0.1	2.9	2	0	0	2	2	2	2	NTPase
FtsK_SpoIIIE	PF01580.18	gi|227827054|ref|YP_002828833.1|	-	0.00012	21.5	1.1	0.011	15.2	0.0	2.4	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
Mg_chelatase	PF01078.21	gi|227827054|ref|YP_002828833.1|	-	0.00014	21.4	0.4	0.032	13.6	0.0	2.7	3	0	0	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
ATPase_2	PF01637.18	gi|227827054|ref|YP_002828833.1|	-	0.00014	21.9	0.6	0.21	11.5	0.1	2.4	2	0	0	2	2	2	2	ATPase	domain	predominantly	from	Archaea
ABC_ATPase	PF09818.9	gi|227827054|ref|YP_002828833.1|	-	0.00018	20.5	4.2	0.69	8.6	0.3	4.5	5	0	0	5	5	5	1	Predicted	ATPase	of	the	ABC	class
NB-ARC	PF00931.22	gi|227827054|ref|YP_002828833.1|	-	0.00026	20.3	0.9	0.34	10.0	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
AAA_25	PF13481.6	gi|227827054|ref|YP_002828833.1|	-	0.0003	20.4	1.1	0.36	10.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|227827054|ref|YP_002828833.1|	-	0.00047	19.9	0.2	0.97	9.1	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|227827054|ref|YP_002828833.1|	-	0.00071	19.1	0.7	0.71	9.4	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
MMR_HSR1	PF01926.23	gi|227827054|ref|YP_002828833.1|	-	0.00073	19.6	1.3	1	9.5	0.0	2.9	2	1	0	2	2	2	2	50S	ribosome-binding	GTPase
AAA_18	PF13238.6	gi|227827054|ref|YP_002828833.1|	-	0.0011	19.5	0.7	3.3	8.3	0.1	3.2	3	0	0	3	3	3	0	AAA	domain
cobW	PF02492.19	gi|227827054|ref|YP_002828833.1|	-	0.0012	18.5	2.2	0.17	11.5	0.4	2.6	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.6	gi|227827054|ref|YP_002828833.1|	-	0.0019	18.2	0.1	4.7	7.3	0.0	3.1	3	1	0	4	4	2	0	AAA	domain
Gtr1_RagA	PF04670.12	gi|227827054|ref|YP_002828833.1|	-	0.0065	15.8	1.2	1.5	8.1	0.1	2.3	2	0	0	2	2	2	1	Gtr1/RagA	G	protein	conserved	region
PduV-EutP	PF10662.9	gi|227827054|ref|YP_002828833.1|	-	0.0072	16.1	1.3	1.8	8.3	0.1	3.0	3	0	0	3	3	3	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_5	PF07728.14	gi|227827054|ref|YP_002828833.1|	-	0.0075	16.3	0.8	3.8	7.5	0.0	2.8	3	0	0	3	3	2	0	AAA	domain	(dynein-related	subfamily)
PIF1	PF05970.14	gi|227827054|ref|YP_002828833.1|	-	0.008	15.4	0.8	2.3	7.3	0.3	3.2	4	0	0	4	4	3	1	PIF1-like	helicase
DLIC	PF05783.11	gi|227827054|ref|YP_002828833.1|	-	0.0083	15.0	1.8	1.4	7.7	0.0	2.1	2	0	0	2	2	2	1	Dynein	light	intermediate	chain	(DLIC)
Resolvase	PF00239.21	gi|227827054|ref|YP_002828833.1|	-	0.0096	16.0	0.2	3.9	7.6	0.0	2.3	2	0	0	2	2	2	0	Resolvase,	N	terminal	domain
AAA_33	PF13671.6	gi|227827054|ref|YP_002828833.1|	-	0.011	15.9	0.5	6.8	6.9	0.0	2.8	3	0	0	3	3	2	0	AAA	domain
G-alpha	PF00503.20	gi|227827054|ref|YP_002828833.1|	-	0.012	14.8	0.1	2.8	7.0	0.1	2.3	2	0	0	2	2	2	0	G-protein	alpha	subunit
DUF815	PF05673.13	gi|227827054|ref|YP_002828833.1|	-	0.012	14.8	0.2	1.4	8.1	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
SbcCD_C	PF13558.6	gi|227827054|ref|YP_002828833.1|	-	0.012	15.8	0.0	0.42	10.9	0.0	2.9	2	1	0	2	2	1	0	Putative	exonuclease	SbcCD,	C	subunit
RNA_helicase	PF00910.22	gi|227827054|ref|YP_002828833.1|	-	0.012	15.9	0.1	6.9	7.1	0.0	2.5	2	0	0	2	2	2	0	RNA	helicase
Zeta_toxin	PF06414.12	gi|227827054|ref|YP_002828833.1|	-	0.014	14.7	0.1	4.3	6.6	0.0	2.4	2	0	0	2	2	2	0	Zeta	toxin
TsaE	PF02367.17	gi|227827054|ref|YP_002828833.1|	-	0.014	15.4	1.7	1.2	9.1	0.5	2.7	3	0	0	3	3	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATPase	PF06745.13	gi|227827054|ref|YP_002828833.1|	-	0.015	14.7	5.4	0.39	10.0	0.0	3.2	3	0	0	3	3	3	0	KaiC
MobB	PF03205.14	gi|227827054|ref|YP_002828833.1|	-	0.015	15.2	6.2	0.25	11.2	0.6	3.3	4	0	0	4	4	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ATP_bind_1	PF03029.17	gi|227827054|ref|YP_002828833.1|	-	0.017	14.9	0.4	6.1	6.5	0.1	3.1	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
ATP-synt_ab	PF00006.25	gi|227827054|ref|YP_002828833.1|	-	0.021	14.5	0.4	0.46	10.1	0.1	2.4	2	1	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA	PF00004.29	gi|227827054|ref|YP_002828833.1|	-	0.023	15.1	0.9	2.3	8.7	0.4	2.6	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2791	PF10923.8	gi|227827054|ref|YP_002828833.1|	-	0.025	13.5	0.1	0.71	8.7	0.0	2.1	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_19	PF13245.6	gi|227827054|ref|YP_002828833.1|	-	0.042	14.2	3.6	2.9	8.2	0.3	2.8	2	1	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|227827054|ref|YP_002828833.1|	-	0.046	13.4	0.3	4.8	6.9	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Viral_helicase1	PF01443.18	gi|227827054|ref|YP_002828833.1|	-	0.046	13.4	0.1	1.7	8.3	0.0	2.4	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
PhoH	PF02562.16	gi|227827054|ref|YP_002828833.1|	-	0.049	13.1	0.2	2.9	7.3	0.2	2.4	2	0	0	2	2	2	0	PhoH-like	protein
AAA_13	PF13166.6	gi|227827054|ref|YP_002828833.1|	-	0.067	11.8	0.1	0.94	8.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Septin	PF00735.18	gi|227827054|ref|YP_002828833.1|	-	0.069	12.4	1.0	2.4	7.4	0.0	2.2	2	0	0	2	2	2	0	Septin
Sigma54_activat	PF00158.26	gi|227827054|ref|YP_002828833.1|	-	0.074	12.7	0.5	1.3	8.7	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
KAP_NTPase	PF07693.14	gi|227827054|ref|YP_002828833.1|	-	0.087	12.0	0.2	4.8	6.3	0.0	2.6	3	0	0	3	3	3	0	KAP	family	P-loop	domain
APS_kinase	PF01583.20	gi|227827054|ref|YP_002828833.1|	-	0.11	12.4	0.7	2.1	8.2	0.0	2.7	3	0	0	3	3	3	0	Adenylylsulphate	kinase
TniB	PF05621.11	gi|227827054|ref|YP_002828833.1|	-	0.16	11.4	1.1	11	5.3	0.0	3.0	3	0	0	3	3	3	0	Bacterial	TniB	protein
Pox_A32	PF04665.12	gi|227827054|ref|YP_002828833.1|	-	0.21	11.0	1.2	2.1	7.8	0.2	2.3	2	0	0	2	2	2	0	Poxvirus	A32	protein
DAP3	PF10236.9	gi|227827054|ref|YP_002828833.1|	-	0.27	10.4	1.1	5	6.2	0.1	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_11	PF13086.6	gi|227827054|ref|YP_002828833.1|	-	0.5	10.1	1.4	18	5.0	0.1	2.9	2	1	0	3	3	3	0	AAA	domain
HAD_2	PF13419.6	gi|227827055|ref|YP_002828834.1|	-	3.9e-11	43.3	0.0	7e-11	42.5	0.0	1.4	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|227827055|ref|YP_002828834.1|	-	1.6e-06	28.6	0.0	5e-06	26.9	0.0	2.0	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|227827055|ref|YP_002828834.1|	-	0.0024	17.9	0.0	0.0063	16.6	0.0	1.7	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Methyltransf_11	PF08241.12	gi|227827056|ref|YP_002828835.1|	-	1.4e-19	70.6	0.0	2.1e-19	70.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227827056|ref|YP_002828835.1|	-	2.3e-18	66.4	0.0	2.8e-18	66.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827056|ref|YP_002828835.1|	-	6.1e-17	62.1	0.0	9e-17	61.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227827056|ref|YP_002828835.1|	-	4.3e-15	55.9	0.0	5.3e-15	55.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227827056|ref|YP_002828835.1|	-	5.4e-10	39.9	0.0	1.1e-09	38.9	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227827056|ref|YP_002828835.1|	-	9.1e-08	31.7	0.1	1.1e-07	31.4	0.1	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|227827056|ref|YP_002828835.1|	-	1.4e-07	31.3	0.0	2.3e-07	30.5	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.20	gi|227827056|ref|YP_002828835.1|	-	7.9e-07	28.4	0.0	2e-06	27.1	0.0	1.6	1	1	1	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.13	gi|227827056|ref|YP_002828835.1|	-	1.1e-06	28.3	0.0	1.3e-06	28.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
FtsJ	PF01728.19	gi|227827056|ref|YP_002828835.1|	-	4.5e-06	26.9	0.0	6.7e-06	26.3	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltr_RsmB-F	PF01189.17	gi|227827056|ref|YP_002828835.1|	-	1.6e-05	24.7	0.0	1.9e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_8	PF05148.15	gi|227827056|ref|YP_002828835.1|	-	1.7e-05	24.8	0.0	0.00015	21.7	0.0	2.0	1	1	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_18	PF12847.7	gi|227827056|ref|YP_002828835.1|	-	3.5e-05	23.8	0.0	6.6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|227827056|ref|YP_002828835.1|	-	7.2e-05	22.6	0.0	9.8e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
TehB	PF03848.14	gi|227827056|ref|YP_002828835.1|	-	7.5e-05	22.2	0.0	0.0001	21.8	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
GidB	PF02527.15	gi|227827056|ref|YP_002828835.1|	-	7.9e-05	22.0	0.0	9.6e-05	21.8	0.0	1.2	1	0	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
PCMT	PF01135.19	gi|227827056|ref|YP_002828835.1|	-	9.7e-05	22.2	0.0	0.00014	21.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_32	PF13679.6	gi|227827056|ref|YP_002828835.1|	-	0.0011	19.0	0.0	0.0016	18.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DREV	PF05219.12	gi|227827056|ref|YP_002828835.1|	-	0.0016	17.6	0.0	0.002	17.3	0.0	1.3	1	1	0	1	1	1	1	DREV	methyltransferase
NodS	PF05401.11	gi|227827056|ref|YP_002828835.1|	-	0.0031	17.2	0.0	0.0037	16.9	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
MetW	PF07021.12	gi|227827056|ref|YP_002828835.1|	-	0.0049	16.5	0.0	0.0068	16.0	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_9	PF08003.11	gi|227827056|ref|YP_002828835.1|	-	0.0052	15.8	0.0	0.0061	15.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Cons_hypoth95	PF03602.15	gi|227827056|ref|YP_002828835.1|	-	0.007	16.0	0.0	0.0088	15.7	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_4	PF02390.17	gi|227827056|ref|YP_002828835.1|	-	0.019	14.4	0.0	0.032	13.7	0.0	1.5	1	1	0	1	1	1	0	Putative	methyltransferase
DUF1286	PF06939.11	gi|227827057|ref|YP_002828836.1|	-	2.9e-46	156.3	8.1	4e-46	155.9	8.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1286)
YdjM	PF04307.14	gi|227827057|ref|YP_002828836.1|	-	0.024	13.9	4.2	0.043	13.1	4.2	1.7	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
PalH	PF08733.10	gi|227827057|ref|YP_002828836.1|	-	0.34	9.9	3.6	0.38	9.7	3.6	1.2	1	0	0	1	1	1	0	PalH/RIM21
7kD_DNA_binding	PF02294.18	gi|227827059|ref|YP_002828838.1|	-	6e-40	135.1	3.8	6.8e-40	134.9	3.8	1.0	1	0	0	1	1	1	1	7kD	DNA-binding	domain
Oxidored_FMN	PF00724.20	gi|227827060|ref|YP_002828839.1|	-	6.2e-61	206.6	0.0	7.7e-61	206.2	0.0	1.1	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Pyr_redox_2	PF07992.14	gi|227827060|ref|YP_002828839.1|	-	1.2e-08	34.6	0.0	7e-08	32.0	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|227827060|ref|YP_002828839.1|	-	1.5e-07	31.5	0.0	3.8e-07	30.2	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|227827060|ref|YP_002828839.1|	-	1.8e-06	28.4	6.1	0.00062	20.3	2.5	4.2	3	1	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Dus	PF01207.17	gi|227827060|ref|YP_002828839.1|	-	6.1e-06	25.5	0.0	1e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
DAO	PF01266.24	gi|227827060|ref|YP_002828839.1|	-	6.8e-06	25.9	0.2	1.7e-05	24.6	0.2	1.7	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227827060|ref|YP_002828839.1|	-	5.7e-05	22.5	0.0	0.28	10.4	0.0	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|227827060|ref|YP_002828839.1|	-	0.00016	21.6	0.0	0.0003	20.7	0.0	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.14	gi|227827060|ref|YP_002828839.1|	-	0.00036	19.4	0.7	0.00076	18.3	0.1	1.7	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|227827060|ref|YP_002828839.1|	-	0.00072	19.0	0.4	0.0011	18.4	0.4	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|227827060|ref|YP_002828839.1|	-	0.0012	18.1	0.2	0.0019	17.3	0.2	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.21	gi|227827060|ref|YP_002828839.1|	-	0.0013	18.1	0.0	0.0026	17.1	0.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|227827060|ref|YP_002828839.1|	-	0.0017	17.7	0.2	0.0037	16.5	0.2	1.5	1	0	0	1	1	1	1	Thi4	family
FAD_binding_2	PF00890.24	gi|227827060|ref|YP_002828839.1|	-	0.003	16.7	0.2	0.0047	16.1	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|227827060|ref|YP_002828839.1|	-	0.0095	15.2	0.9	0.014	14.6	0.9	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Amino_oxidase	PF01593.24	gi|227827060|ref|YP_002828839.1|	-	0.12	11.7	0.0	0.19	11.0	0.0	1.2	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
VASP_tetra	PF08776.11	gi|227827060|ref|YP_002828839.1|	-	4.3	7.0	7.0	0.95	9.1	1.0	3.1	3	0	0	3	3	3	0	VASP	tetramerisation	domain
Methyltransf_21	PF05050.12	gi|227827061|ref|YP_002828840.1|	-	2.6e-11	43.8	0.1	3e-11	43.6	0.1	1.1	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Spore_III_AF	PF09581.10	gi|227827061|ref|YP_002828840.1|	-	0.02	14.9	0.2	0.028	14.4	0.2	1.5	1	1	0	1	1	1	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
Amidinotransf	PF02274.17	gi|227827061|ref|YP_002828840.1|	-	0.061	12.4	0.1	0.11	11.6	0.1	1.3	1	1	0	1	1	1	0	Amidinotransferase
GATase_4	PF13230.6	gi|227827063|ref|YP_002828842.1|	-	0.00055	18.9	0.0	0.00072	18.5	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.6	gi|227827063|ref|YP_002828842.1|	-	0.0013	19.0	0.0	0.0021	18.3	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Sec7	PF01369.20	gi|227827063|ref|YP_002828842.1|	-	0.058	13.1	0.0	0.076	12.7	0.0	1.2	1	0	0	1	1	1	0	Sec7	domain
Peptidase_U32	PF01136.19	gi|227827064|ref|YP_002828843.1|	-	2.8e-14	52.8	0.2	1.2e-09	37.6	0.0	2.2	2	0	0	2	2	2	2	Peptidase	family	U32
Tn916-Xis	PF09035.10	gi|227827064|ref|YP_002828843.1|	-	0.00077	19.6	0.4	0.69	10.1	0.0	3.3	3	0	0	3	3	3	2	Excisionase	from	transposon	Tn916
TusA	PF01206.17	gi|227827065|ref|YP_002828844.1|	-	2.3e-25	88.2	0.0	2.6e-25	88.0	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|227827065|ref|YP_002828844.1|	-	0.031	14.1	0.0	0.053	13.4	0.0	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
Ndr	PF03096.14	gi|227827066|ref|YP_002828845.1|	-	0.18	10.4	0.0	0.26	10.0	0.0	1.1	1	0	0	1	1	1	0	Ndr	family
VIT1	PF01988.19	gi|227827066|ref|YP_002828845.1|	-	1.2	8.9	5.3	0.39	10.6	1.8	1.9	1	1	1	2	2	2	0	VIT	family
TadE	PF07811.12	gi|227827066|ref|YP_002828845.1|	-	3.3	8.1	5.8	0.71	10.2	0.3	2.6	2	0	0	2	2	2	0	TadE-like	protein
COX2-transmemb	PF09125.10	gi|227827066|ref|YP_002828845.1|	-	6.9	6.6	6.6	18	5.3	0.6	3.2	3	0	0	3	3	3	0	Cytochrome	C	oxidase	subunit	II,	transmembrane
Hemerythrin	PF01814.23	gi|227827068|ref|YP_002828847.1|	-	5.9e-09	36.6	0.4	8.7e-09	36.1	0.4	1.3	1	1	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
RexA	PF15969.5	gi|227827069|ref|YP_002828848.1|	-	0.028	14.0	0.2	0.068	12.7	0.0	1.7	2	0	0	2	2	2	0	Intracellular	sensor	of	Lambda	phage,	Abi	component
Fer4	PF00037.27	gi|227827070|ref|YP_002828849.1|	-	2.6e-13	49.2	13.7	3.7e-07	29.7	4.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227827070|ref|YP_002828849.1|	-	1.6e-11	44.6	26.6	1.3e-07	32.0	8.7	1.8	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227827070|ref|YP_002828849.1|	-	9.7e-09	35.2	19.1	4.2e-07	30.0	8.1	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227827070|ref|YP_002828849.1|	-	9.9e-09	35.2	5.3	1.4e-08	34.7	5.3	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227827070|ref|YP_002828849.1|	-	7.1e-07	29.0	13.4	0.0001	22.2	4.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227827070|ref|YP_002828849.1|	-	9.5e-07	28.9	6.5	1.6e-06	28.1	6.5	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227827070|ref|YP_002828849.1|	-	3.5e-05	23.6	11.0	0.015	15.3	3.5	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|227827070|ref|YP_002828849.1|	-	4.6e-05	24.3	8.6	0.0079	17.1	3.0	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|227827070|ref|YP_002828849.1|	-	0.00011	22.4	3.7	0.0058	16.8	0.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|227827070|ref|YP_002828849.1|	-	0.00013	22.4	9.6	0.058	13.9	0.7	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|227827070|ref|YP_002828849.1|	-	0.00025	21.5	0.9	0.32	11.6	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227827070|ref|YP_002828849.1|	-	0.00044	20.7	8.5	0.015	15.7	9.3	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|227827070|ref|YP_002828849.1|	-	0.00064	20.5	14.6	0.012	16.5	6.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|227827070|ref|YP_002828849.1|	-	0.00069	19.9	9.4	0.045	14.3	3.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|227827070|ref|YP_002828849.1|	-	0.0035	17.5	0.4	0.004	17.3	0.4	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
DUF2761	PF10959.8	gi|227827070|ref|YP_002828849.1|	-	0.013	15.4	0.1	0.018	15.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2761)
Fer4_22	PF17179.4	gi|227827070|ref|YP_002828849.1|	-	0.053	14.4	3.8	1.8	9.5	0.5	2.2	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227827070|ref|YP_002828849.1|	-	0.32	11.8	12.4	1.9	9.3	0.5	2.8	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
ATP-grasp_5	PF13549.6	gi|227827072|ref|YP_002828851.1|	-	4.2e-48	163.7	0.5	8.2e-48	162.8	0.5	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|227827072|ref|YP_002828851.1|	-	3.3e-47	159.7	0.0	1e-46	158.2	0.0	1.8	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|227827072|ref|YP_002828851.1|	-	2.7e-22	79.4	0.4	2.5e-21	76.3	0.1	2.5	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|227827072|ref|YP_002828851.1|	-	1.5e-14	54.4	0.3	5.4e-14	52.6	0.3	2.0	1	0	0	1	1	1	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|227827072|ref|YP_002828851.1|	-	0.00075	19.1	0.2	0.031	13.8	0.2	2.9	2	1	0	2	2	2	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|227827072|ref|YP_002828851.1|	-	0.0013	18.5	0.1	0.0035	17.2	0.1	1.7	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RimK	PF08443.11	gi|227827072|ref|YP_002828851.1|	-	0.0073	15.9	0.1	0.017	14.7	0.1	1.6	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|227827072|ref|YP_002828851.1|	-	0.0095	15.5	0.3	0.031	13.8	0.1	2.0	2	0	0	2	2	2	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|227827072|ref|YP_002828851.1|	-	0.043	13.3	0.7	0.14	11.7	0.2	2.0	2	0	0	2	2	2	0	D-ala	D-ala	ligase	C-terminus
F420_oxidored	PF03807.17	gi|227827072|ref|YP_002828851.1|	-	0.06	13.9	1.1	7.3	7.2	0.1	3.3	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF981	PF06168.11	gi|227827073|ref|YP_002828852.1|	-	8.2e-57	192.2	20.0	9.6e-57	191.9	20.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF981)
Colicin_V	PF02674.16	gi|227827073|ref|YP_002828852.1|	-	0.00076	19.5	5.9	0.00076	19.5	5.9	2.7	2	1	0	2	2	2	1	Colicin	V	production	protein
DUF1240	PF06836.12	gi|227827073|ref|YP_002828852.1|	-	3.7	8.1	6.2	3.1	8.4	1.0	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1240)
Spore_YhaL	PF14147.6	gi|227827073|ref|YP_002828852.1|	-	7.3	6.4	6.9	0.85	9.4	0.9	2.6	3	0	0	3	3	3	0	Sporulation	protein	YhaL
AA_permease	PF00324.21	gi|227827074|ref|YP_002828853.1|	-	8.1e-05	21.4	47.8	0.00042	19.0	47.3	2.3	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|227827074|ref|YP_002828853.1|	-	0.00024	20.1	43.6	0.00024	20.1	43.6	2.5	1	1	1	2	2	2	1	Amino	acid	permease
DUF1664	PF07889.12	gi|227827075|ref|YP_002828854.1|	-	1.1e-05	25.4	15.3	0.0017	18.4	5.3	3.9	2	1	2	4	4	4	2	Protein	of	unknown	function	(DUF1664)
ATG16	PF08614.11	gi|227827075|ref|YP_002828854.1|	-	7.8e-05	23.0	1.7	0.00015	22.1	1.7	1.5	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
Spc7	PF08317.11	gi|227827075|ref|YP_002828854.1|	-	0.0005	19.1	12.4	0.0005	19.1	12.4	1.8	2	1	1	3	3	3	1	Spc7	kinetochore	protein
IFT57	PF10498.9	gi|227827075|ref|YP_002828854.1|	-	0.0005	19.2	12.5	0.0008	18.5	12.5	1.3	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
Rootletin	PF15035.6	gi|227827075|ref|YP_002828854.1|	-	0.0012	18.9	8.6	0.0019	18.2	8.6	1.3	1	0	0	1	1	1	1	Ciliary	rootlet	component,	centrosome	cohesion
DUF948	PF06103.11	gi|227827075|ref|YP_002828854.1|	-	0.0016	18.6	6.7	0.0093	16.2	1.8	2.6	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
AAA_13	PF13166.6	gi|227827075|ref|YP_002828854.1|	-	0.0016	17.1	13.8	0.0022	16.7	13.8	1.2	1	0	0	1	1	1	1	AAA	domain
DUF4763	PF15960.5	gi|227827075|ref|YP_002828854.1|	-	0.0018	17.6	0.3	0.0018	17.6	0.3	2.3	2	1	1	3	3	2	1	Domain	of	unknown	function	(DUF4763)
Baculo_PEP_C	PF04513.12	gi|227827075|ref|YP_002828854.1|	-	0.0022	18.0	4.0	0.012	15.7	2.3	2.9	2	1	0	2	2	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
KxDL	PF10241.9	gi|227827075|ref|YP_002828854.1|	-	0.0065	16.7	3.7	0.0065	16.7	3.7	2.7	2	1	1	3	3	2	1	Uncharacterized	conserved	protein
DUF3450	PF11932.8	gi|227827075|ref|YP_002828854.1|	-	0.0066	15.8	3.2	0.0066	15.8	3.2	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
WEMBL	PF05701.11	gi|227827075|ref|YP_002828854.1|	-	0.01	14.6	13.0	0.0077	15.0	11.5	1.3	1	1	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
MAP65_ASE1	PF03999.12	gi|227827075|ref|YP_002828854.1|	-	0.018	13.8	14.3	0.02	13.6	13.5	1.4	1	1	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
DivIC	PF04977.15	gi|227827075|ref|YP_002828854.1|	-	0.018	14.8	1.1	0.018	14.8	1.1	4.5	3	1	2	5	5	5	0	Septum	formation	initiator
Exonuc_VII_L	PF02601.15	gi|227827075|ref|YP_002828854.1|	-	0.019	14.6	5.4	0.027	14.1	5.4	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Nup88	PF10168.9	gi|227827075|ref|YP_002828854.1|	-	0.023	12.5	15.9	0.03	12.1	15.9	1.1	1	0	0	1	1	1	0	Nuclear	pore	component
Laminin_II	PF06009.12	gi|227827075|ref|YP_002828854.1|	-	0.024	14.7	1.5	0.024	14.7	1.5	2.7	2	1	2	4	4	3	0	Laminin	Domain	II
STI1	PF17830.1	gi|227827075|ref|YP_002828854.1|	-	0.027	14.4	1.2	6.7	6.7	0.4	2.7	2	0	0	2	2	2	0	STI1	domain
Baculo_VP39	PF04501.12	gi|227827075|ref|YP_002828854.1|	-	0.028	14.0	3.4	0.042	13.3	3.4	1.4	1	0	0	1	1	1	0	Baculovirus	major	capsid	protein	VP39
Atg14	PF10186.9	gi|227827075|ref|YP_002828854.1|	-	0.029	13.5	8.0	0.045	12.8	8.0	1.4	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
bZIP_1	PF00170.21	gi|227827075|ref|YP_002828854.1|	-	0.03	14.4	1.1	0.03	14.4	1.1	4.0	3	1	2	5	5	5	0	bZIP	transcription	factor
ZapB	PF06005.12	gi|227827075|ref|YP_002828854.1|	-	0.038	14.4	2.0	0.038	14.4	2.0	3.5	2	1	1	3	3	3	0	Cell	division	protein	ZapB
BST2	PF16716.5	gi|227827075|ref|YP_002828854.1|	-	0.038	14.6	0.3	0.038	14.6	0.3	2.6	2	1	0	3	3	2	0	Bone	marrow	stromal	antigen	2
DUF2968	PF11180.8	gi|227827075|ref|YP_002828854.1|	-	0.041	13.5	2.1	0.063	12.9	2.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
Phage_GPO	PF05929.11	gi|227827075|ref|YP_002828854.1|	-	0.055	13.1	2.8	0.083	12.5	2.8	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
FmiP_Thoc5	PF09766.9	gi|227827075|ref|YP_002828854.1|	-	0.065	12.5	8.3	0.091	12.0	8.3	1.2	1	0	0	1	1	1	0	Fms-interacting	protein/Thoc5
Golgin_A5	PF09787.9	gi|227827075|ref|YP_002828854.1|	-	0.072	12.6	11.1	0.066	12.7	9.7	1.5	1	1	0	1	1	1	0	Golgin	subfamily	A	member	5
Laminin_I	PF06008.14	gi|227827075|ref|YP_002828854.1|	-	0.081	12.6	10.9	0.22	11.2	3.0	2.4	1	1	1	2	2	2	0	Laminin	Domain	I
Lebercilin	PF15619.6	gi|227827075|ref|YP_002828854.1|	-	0.1	12.2	14.9	0.013	15.2	10.6	1.7	2	0	0	2	2	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DLP_helical	PF18709.1	gi|227827075|ref|YP_002828854.1|	-	0.13	11.5	13.6	0.058	12.6	1.6	2.6	1	1	2	3	3	3	0	Dynamin-like	helical	domain
Pullulanase_Ins	PF18494.1	gi|227827075|ref|YP_002828854.1|	-	0.13	12.7	0.4	0.47	11.0	0.3	2.1	1	1	0	1	1	1	0	Pullulanase	Ins	domain
DUF2353	PF09789.9	gi|227827075|ref|YP_002828854.1|	-	0.14	11.5	15.9	0.26	10.6	12.9	2.2	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
TPR_MLP1_2	PF07926.12	gi|227827075|ref|YP_002828854.1|	-	0.15	12.2	12.8	3.1	7.9	1.8	3.5	2	1	2	4	4	3	0	TPR/MLP1/MLP2-like	protein
ADIP	PF11559.8	gi|227827075|ref|YP_002828854.1|	-	0.17	11.9	13.7	0.026	14.6	9.2	1.9	2	1	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
TMPIT	PF07851.13	gi|227827075|ref|YP_002828854.1|	-	0.31	10.2	10.8	0.092	12.0	1.4	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
Bacillus_HBL	PF05791.11	gi|227827075|ref|YP_002828854.1|	-	0.32	10.8	8.8	0.16	11.8	6.2	1.8	2	1	0	2	2	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
Fib_alpha	PF08702.10	gi|227827075|ref|YP_002828854.1|	-	0.37	11.0	16.2	0.03	14.5	10.2	2.1	2	1	0	2	2	1	0	Fibrinogen	alpha/beta	chain	family
COG5	PF10392.9	gi|227827075|ref|YP_002828854.1|	-	0.42	10.8	6.6	0.82	9.8	1.0	2.5	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
Snapin_Pallidin	PF14712.6	gi|227827075|ref|YP_002828854.1|	-	0.45	11.0	12.6	0.5	10.8	0.6	3.5	2	1	1	3	3	3	0	Snapin/Pallidin
Syntaxin-6_N	PF09177.11	gi|227827075|ref|YP_002828854.1|	-	0.47	11.0	9.8	2.9	8.5	0.4	3.0	2	1	1	3	3	2	0	Syntaxin	6,	N-terminal
LPP	PF04728.13	gi|227827075|ref|YP_002828854.1|	-	0.53	10.7	9.8	0.7	10.3	0.1	3.5	2	1	0	3	3	2	0	Lipoprotein	leucine-zipper
Prominin	PF05478.11	gi|227827075|ref|YP_002828854.1|	-	0.53	8.2	9.8	3.5	5.5	0.3	2.0	1	1	1	2	2	2	0	Prominin
MCPsignal	PF00015.21	gi|227827075|ref|YP_002828854.1|	-	0.53	10.1	5.9	0.21	11.4	1.7	2.3	2	1	0	3	3	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
ISG65-75	PF11727.8	gi|227827075|ref|YP_002828854.1|	-	0.79	8.9	14.1	4.5	6.4	7.3	2.6	2	1	1	3	3	3	0	Invariant	surface	glycoprotein
DUF3782	PF12644.7	gi|227827075|ref|YP_002828854.1|	-	0.83	9.8	8.7	2.7	8.2	0.8	3.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3782)
DUF1640	PF07798.11	gi|227827075|ref|YP_002828854.1|	-	1.2	9.2	16.7	0.4	10.7	5.8	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1640)
CortBP2	PF09727.9	gi|227827075|ref|YP_002828854.1|	-	1.2	9.0	14.6	0.32	10.9	11.4	1.6	2	0	0	2	2	1	0	Cortactin-binding	protein-2
FlaC_arch	PF05377.11	gi|227827075|ref|YP_002828854.1|	-	1.3	9.5	17.8	4.4	7.8	4.6	4.5	2	1	3	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Fibin	PF15819.5	gi|227827075|ref|YP_002828854.1|	-	1.6	8.5	8.5	7.2	6.3	0.3	2.2	1	1	1	2	2	2	0	Fin	bud	initiation	factor	homologue
COMP	PF11598.8	gi|227827075|ref|YP_002828854.1|	-	1.7	9.2	11.3	1.3	9.5	0.4	3.8	2	1	2	4	4	3	0	Cartilage	oligomeric	matrix	protein
CENP-F_leu_zip	PF10473.9	gi|227827075|ref|YP_002828854.1|	-	1.7	8.6	18.5	0.49	10.4	11.6	2.6	2	1	1	3	3	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Fez1	PF06818.15	gi|227827075|ref|YP_002828854.1|	-	1.9	8.9	11.7	3.7	8.0	11.8	1.7	1	1	0	1	1	1	0	Fez1
DUF4558	PF15104.6	gi|227827075|ref|YP_002828854.1|	-	2.2	8.4	8.8	3.8	7.6	2.2	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4558)
APG6_N	PF17675.1	gi|227827075|ref|YP_002828854.1|	-	2.2	8.8	12.7	1.2	9.7	9.4	2.2	2	1	0	2	2	1	0	Apg6	coiled-coil	region
Mod_r	PF07200.13	gi|227827075|ref|YP_002828854.1|	-	2.3	8.3	12.6	3.1	7.9	9.1	2.6	2	1	0	2	2	1	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF1515	PF07439.11	gi|227827075|ref|YP_002828854.1|	-	3.2	7.8	10.0	6.7	6.8	1.1	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
TSNAXIP1_N	PF15739.5	gi|227827075|ref|YP_002828854.1|	-	3.2	8.2	13.9	0.49	10.8	8.8	2.4	2	2	0	2	2	1	0	Translin-associated	factor	X-interacting	N-terminus
Fungal_TACC	PF12709.7	gi|227827075|ref|YP_002828854.1|	-	3.3	8.2	13.9	1.7	9.1	4.0	3.2	2	1	1	3	3	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF4988	PF16378.5	gi|227827075|ref|YP_002828854.1|	-	3.3	7.3	9.9	1.3	8.7	1.5	3.1	2	1	1	3	3	3	0	Domain	of	unknown	function
YabA	PF06156.13	gi|227827075|ref|YP_002828854.1|	-	3.7	8.2	15.9	0.27	11.9	2.8	3.2	2	1	2	4	4	3	0	Initiation	control	protein	YabA
GrpE	PF01025.19	gi|227827075|ref|YP_002828854.1|	-	4.1	7.0	15.5	1.2	8.8	0.9	2.6	1	1	1	2	2	2	0	GrpE
DUF724	PF05266.14	gi|227827075|ref|YP_002828854.1|	-	5.6	6.7	18.6	0.63	9.8	10.1	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF724)
DUF16	PF01519.16	gi|227827075|ref|YP_002828854.1|	-	5.9	7.4	18.0	0.71	10.4	4.4	3.0	1	1	1	3	3	3	0	Protein	of	unknown	function	DUF16
DUF5082	PF16888.5	gi|227827075|ref|YP_002828854.1|	-	6.1	7.1	17.8	1.9	8.8	0.6	3.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5082)
TMF_DNA_bd	PF12329.8	gi|227827075|ref|YP_002828854.1|	-	6.1	6.9	21.3	0.061	13.3	2.0	3.4	2	1	0	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
SlyX	PF04102.12	gi|227827075|ref|YP_002828854.1|	-	6.6	7.4	7.6	1.9	9.1	1.0	3.1	2	1	1	3	3	2	0	SlyX
Phage_HK97_TLTM	PF06120.11	gi|227827075|ref|YP_002828854.1|	-	8.8	5.4	16.6	0.026	13.7	4.6	2.3	2	1	1	3	3	2	0	Tail	length	tape	measure	protein
DUF2730	PF10805.8	gi|227827075|ref|YP_002828854.1|	-	9.2	6.4	10.5	13	6.0	6.3	3.0	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2730)
Occludin_ELL	PF07303.13	gi|227827075|ref|YP_002828854.1|	-	9.7	7.0	12.2	3.6	8.4	0.7	3.4	2	1	2	4	4	3	0	Occludin	homology	domain
Ubie_methyltran	PF01209.18	gi|227827076|ref|YP_002828855.1|	-	2.9e-21	75.9	0.9	5.2e-21	75.1	0.9	1.3	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.12	gi|227827076|ref|YP_002828855.1|	-	1.9e-10	41.3	0.0	3.3e-10	40.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827076|ref|YP_002828855.1|	-	3.5e-10	40.5	0.0	8.6e-10	39.2	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227827076|ref|YP_002828855.1|	-	2.6e-06	27.3	0.1	6.1e-06	26.1	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|227827076|ref|YP_002828855.1|	-	1.1e-05	25.1	0.0	1.9e-05	24.3	0.0	1.4	1	1	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|227827076|ref|YP_002828855.1|	-	1.5e-05	25.7	0.0	3.4e-05	24.5	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227827076|ref|YP_002828855.1|	-	0.00022	21.1	0.0	0.00031	20.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DUF3347	PF11827.8	gi|227827076|ref|YP_002828855.1|	-	0.094	12.9	0.1	0.45	10.7	0.0	2.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3347)
RecO_N_2	PF13114.6	gi|227827077|ref|YP_002828856.1|	-	0.071	12.8	0.1	0.13	12.0	0.1	1.4	1	0	0	1	1	1	0	RecO	N	terminal
Amidohydro_1	PF01979.20	gi|227827078|ref|YP_002828857.1|	-	1.9e-40	139.3	0.0	2.2e-40	139.0	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|227827078|ref|YP_002828857.1|	-	1.5e-14	54.3	0.0	1.1e-08	35.0	0.0	2.4	2	1	0	2	2	2	2	Amidohydrolase	family
Beta_helix	PF13229.6	gi|227827078|ref|YP_002828857.1|	-	0.095	12.5	0.1	0.14	12.0	0.1	1.2	1	0	0	1	1	1	0	Right	handed	beta	helix	region
DUF2249	PF10006.9	gi|227827079|ref|YP_002828858.1|	-	5.7e-15	54.9	0.1	3.3e-14	52.5	0.1	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2249)
Cupin_2	PF07883.11	gi|227827079|ref|YP_002828858.1|	-	1.9e-11	43.5	0.3	5.8e-11	42.0	0.0	1.8	2	0	0	2	2	2	1	Cupin	domain
AraC_binding	PF02311.19	gi|227827079|ref|YP_002828858.1|	-	6.8e-06	26.0	0.0	1.2e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|227827079|ref|YP_002828858.1|	-	1.1e-05	25.1	0.1	2.9e-05	23.7	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF861)
CENP-C_C	PF11699.8	gi|227827079|ref|YP_002828858.1|	-	7.8e-05	22.8	0.0	0.00014	22.0	0.0	1.4	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_1	PF00190.22	gi|227827079|ref|YP_002828858.1|	-	0.00032	20.3	0.0	0.00051	19.7	0.0	1.3	1	0	0	1	1	1	1	Cupin
SAS-6_N	PF16531.5	gi|227827079|ref|YP_002828858.1|	-	0.00034	21.1	0.1	0.00054	20.5	0.1	1.3	1	0	0	1	1	1	1	Centriolar	protein	SAS	N-terminal
Auxin_BP	PF02041.16	gi|227827079|ref|YP_002828858.1|	-	0.0073	16.0	0.0	0.014	15.0	0.0	1.5	1	0	0	1	1	1	1	Auxin	binding	protein
TraI_2B	PF18340.1	gi|227827079|ref|YP_002828858.1|	-	0.0084	16.2	0.2	2.2	8.4	0.0	2.3	1	1	1	2	2	2	2	DNA	relaxase	TraI	2B/2B-like	domain
Peptidase_S48	PF03574.15	gi|227827079|ref|YP_002828858.1|	-	0.052	13.8	0.1	0.071	13.3	0.1	1.3	1	0	0	1	1	1	0	Peptidase	family	S48
DUF2249	PF10006.9	gi|227827080|ref|YP_002828859.1|	-	0.0021	17.9	0.0	0.0022	17.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
Ca_hom_mod	PF14798.6	gi|227827081|ref|YP_002828860.1|	-	0.052	12.7	0.8	0.086	11.9	0.8	1.3	1	0	0	1	1	1	0	Calcium	homeostasis	modulator
Copper-bind	PF00127.20	gi|227827082|ref|YP_002828861.1|	-	2.2e-06	28.0	0.1	6.8e-06	26.5	0.1	1.8	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
SoxE	PF06525.11	gi|227827082|ref|YP_002828861.1|	-	0.0083	15.6	0.7	0.0083	15.6	0.7	2.3	2	1	0	2	2	2	1	Sulfocyanin	(SoxE)	domain
Cu-oxidase_2	PF07731.14	gi|227827082|ref|YP_002828861.1|	-	0.15	11.8	0.1	1.5	8.5	0.0	2.1	2	0	0	2	2	2	0	Multicopper	oxidase
GRP	PF07172.11	gi|227827082|ref|YP_002828861.1|	-	0.27	12.0	14.8	0.67	10.7	14.8	1.6	1	1	0	1	1	1	0	Glycine	rich	protein	family
FeoB_associated	PF12669.7	gi|227827082|ref|YP_002828861.1|	-	4.1	7.9	4.3	7.8	7.0	4.3	1.5	1	0	0	1	1	1	0	FeoB-associated	Cys-rich	membrane	protein
Hemerythrin	PF01814.23	gi|227827083|ref|YP_002828862.1|	-	7.6e-19	68.6	0.4	1.4e-18	67.7	0.0	1.6	2	1	1	3	3	3	1	Hemerythrin	HHE	cation	binding	domain
HicB_lk_antitox	PF15919.5	gi|227827084|ref|YP_002828863.1|	-	0.017	15.3	0.1	0.02	15.0	0.1	1.1	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
HTH_10	PF04967.12	gi|227827085|ref|YP_002828864.1|	-	5.6e-24	83.7	0.1	9e-24	83.0	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|227827085|ref|YP_002828864.1|	-	2.9e-08	33.1	0.1	5.1e-08	32.3	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|227827085|ref|YP_002828864.1|	-	4.9e-05	22.8	0.0	0.00013	21.4	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_26	PF13443.6	gi|227827085|ref|YP_002828864.1|	-	0.0085	16.5	0.0	0.029	14.8	0.0	1.9	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|227827085|ref|YP_002828864.1|	-	0.012	15.0	0.0	0.022	14.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_AsnC-type	PF13404.6	gi|227827085|ref|YP_002828864.1|	-	0.034	14.0	0.1	0.089	12.6	0.1	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|227827085|ref|YP_002828864.1|	-	0.039	14.0	0.0	0.076	13.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-70	region	3
HTH_23	PF13384.6	gi|227827085|ref|YP_002828864.1|	-	0.049	13.4	0.0	0.1	12.4	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|227827085|ref|YP_002828864.1|	-	0.052	13.3	0.0	0.1	12.4	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
GerE	PF00196.19	gi|227827085|ref|YP_002828864.1|	-	0.061	12.9	0.0	7.7	6.1	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_37	PF13744.6	gi|227827085|ref|YP_002828864.1|	-	0.069	13.1	0.0	0.16	11.9	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_35	PF13693.6	gi|227827085|ref|YP_002828864.1|	-	0.11	12.5	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF488	PF04343.13	gi|227827086|ref|YP_002828865.1|	-	6.5e-28	97.8	0.0	7.5e-28	97.6	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
NTP_transf_2	PF01909.23	gi|227827087|ref|YP_002828866.1|	-	1e-10	41.7	1.0	2.6e-10	40.4	1.0	1.7	1	1	1	2	2	2	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227827087|ref|YP_002828866.1|	-	1.4e-08	34.7	0.8	2.4e-08	34.0	0.6	1.7	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|227827087|ref|YP_002828866.1|	-	0.0024	17.7	0.0	0.033	14.0	0.0	2.0	2	0	0	2	2	2	1	Putative	nucleotidyltransferase	DUF294
FeS_assembly_P	PF01883.19	gi|227827088|ref|YP_002828867.1|	-	1.1e-17	63.9	0.1	1.4e-17	63.6	0.1	1.1	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
Antimicrobial19	PF08225.11	gi|227827088|ref|YP_002828867.1|	-	0.0031	17.1	0.6	0.0056	16.2	0.6	1.4	1	0	0	1	1	1	1	Pseudin	antimicrobial	peptide
NifU	PF01106.17	gi|227827088|ref|YP_002828867.1|	-	0.0063	16.6	0.0	0.013	15.7	0.0	1.5	1	0	0	1	1	1	1	NifU-like	domain
YqhG	PF11079.8	gi|227827088|ref|YP_002828867.1|	-	0.029	13.3	0.3	0.047	12.6	0.3	1.3	1	0	0	1	1	1	0	Bacterial	protein	YqhG	of	unknown	function
Usp	PF00582.26	gi|227827089|ref|YP_002828868.1|	-	2.4e-37	128.6	0.6	3e-37	128.2	0.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
PIN_9	PF18477.1	gi|227827089|ref|YP_002828868.1|	-	0.00083	19.7	0.6	0.097	13.0	0.1	2.2	1	1	1	2	2	2	2	PIN	like	domain
Peptidase_M19	PF01244.21	gi|227827090|ref|YP_002828869.1|	-	2.6e-72	243.7	0.0	2.9e-72	243.5	0.0	1.0	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
DUF2150	PF09920.9	gi|227827090|ref|YP_002828869.1|	-	0.071	13.1	0.1	0.18	11.8	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
Peptidase_S66	PF02016.15	gi|227827090|ref|YP_002828869.1|	-	0.14	12.3	0.0	0.7	10.0	0.0	2.0	2	1	1	3	3	3	0	LD-carboxypeptidase	N-terminal	domain
MFS_1	PF07690.16	gi|227827091|ref|YP_002828870.1|	-	6.4e-28	97.7	62.5	7.1e-24	84.4	41.5	2.3	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|227827091|ref|YP_002828870.1|	-	1.2	7.4	16.3	0.046	12.1	8.1	2.0	2	0	0	2	2	2	0	Transmembrane	secretion	effector
ATPase	PF06745.13	gi|227827092|ref|YP_002828871.1|	-	9.8e-90	299.9	0.1	1.4e-89	299.4	0.1	1.2	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|227827092|ref|YP_002828871.1|	-	4.9e-05	23.0	0.0	0.00011	21.9	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|227827092|ref|YP_002828871.1|	-	0.00013	21.3	4.0	0.0026	17.1	0.4	2.4	2	1	1	3	3	3	2	Uncharacterized	conserved	protein	(DUF2075)
Rad51	PF08423.11	gi|227827092|ref|YP_002828871.1|	-	0.0063	15.8	0.4	0.15	11.3	0.1	2.2	2	0	0	2	2	2	1	Rad51
AAA_14	PF13173.6	gi|227827092|ref|YP_002828871.1|	-	0.0099	15.9	0.0	0.023	14.8	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Frigida	PF07899.11	gi|227827092|ref|YP_002828871.1|	-	0.019	14.3	0.0	0.029	13.6	0.0	1.2	1	0	0	1	1	1	0	Frigida-like	protein
AAA_16	PF13191.6	gi|227827092|ref|YP_002828871.1|	-	0.02	15.3	0.1	0.04	14.3	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
DnaB_C	PF03796.15	gi|227827092|ref|YP_002828871.1|	-	0.021	14.2	0.0	0.058	12.7	0.0	1.7	2	1	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
ATPase_2	PF01637.18	gi|227827092|ref|YP_002828871.1|	-	0.023	14.6	0.0	0.04	13.8	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
T2SSE	PF00437.20	gi|227827092|ref|YP_002828871.1|	-	0.025	13.6	0.0	0.045	12.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
GvpD	PF07088.11	gi|227827092|ref|YP_002828871.1|	-	0.031	12.9	0.0	0.053	12.2	0.0	1.3	1	1	0	1	1	1	0	GvpD	gas	vesicle	protein
Drf_FH3	PF06367.16	gi|227827092|ref|YP_002828871.1|	-	0.1	12.2	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Diaphanous	FH3	Domain
PAXNEB	PF05625.11	gi|227827092|ref|YP_002828871.1|	-	0.16	11.1	0.3	1.8	7.6	0.0	2.3	2	1	1	3	3	3	0	PAXNEB	protein
AAA_19	PF13245.6	gi|227827092|ref|YP_002828871.1|	-	0.23	11.8	0.6	0.94	9.8	0.2	2.0	2	0	0	2	2	2	0	AAA	domain
BacA	PF02673.18	gi|227827093|ref|YP_002828872.1|	-	1.4e-47	162.5	24.6	1.8e-47	162.2	24.6	1.1	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
YwiC	PF14256.6	gi|227827093|ref|YP_002828872.1|	-	0.028	14.7	9.4	0.31	11.4	0.8	2.5	2	0	0	2	2	2	0	YwiC-like	protein
Romo1	PF10247.9	gi|227827093|ref|YP_002828872.1|	-	1	9.8	6.0	0.12	12.8	1.0	2.2	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
Peptidase_M48	PF01435.18	gi|227827094|ref|YP_002828873.1|	-	7.4e-30	104.2	0.0	1.5e-29	103.2	0.0	1.5	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|227827094|ref|YP_002828873.1|	-	0.011	15.0	0.7	0.46	9.6	0.0	2.2	2	0	0	2	2	2	0	BlaR1	peptidase	M56
CCSMST1	PF15013.6	gi|227827094|ref|YP_002828873.1|	-	0.15	12.2	0.2	0.3	11.3	0.2	1.5	1	0	0	1	1	1	0	CCSMST1	family
Deltameth_res	PF16020.5	gi|227827094|ref|YP_002828873.1|	-	5.9	6.8	5.9	47	4.0	3.0	2.7	1	1	1	2	2	2	0	Deltamethrin	resistance
GATase	PF00117.28	gi|227827095|ref|YP_002828874.1|	-	1.2e-17	64.3	0.0	1.6e-17	63.9	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|227827095|ref|YP_002828874.1|	-	5.3e-07	29.6	0.3	4e-06	26.8	0.1	2.2	2	1	0	2	2	2	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|227827095|ref|YP_002828874.1|	-	1.2e-05	25.2	0.0	4.1e-05	23.5	0.0	1.7	1	1	1	2	2	2	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|227827095|ref|YP_002828874.1|	-	0.0038	16.8	0.0	0.0049	16.5	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|227827095|ref|YP_002828874.1|	-	0.0051	16.7	0.0	0.011	15.7	0.0	1.5	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
HTS	PF04204.16	gi|227827095|ref|YP_002828874.1|	-	0.0058	15.6	0.0	0.0086	15.0	0.0	1.3	1	0	0	1	1	1	1	Homoserine	O-succinyltransferase
PPK2	PF03976.14	gi|227827095|ref|YP_002828874.1|	-	0.076	12.5	0.2	0.15	11.6	0.1	1.5	2	0	0	2	2	2	0	Polyphosphate	kinase	2	(PPK2)
DoxA	PF07680.11	gi|227827096|ref|YP_002828875.1|	-	2.8e-41	140.5	0.0	3.5e-41	140.2	0.0	1.1	1	0	0	1	1	1	1	TQO	small	subunit	DoxA
DoxD	PF04173.13	gi|227827097|ref|YP_002828876.1|	-	1.4e-64	217.0	4.1	1.5e-64	216.9	4.1	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
DoxX	PF07681.12	gi|227827097|ref|YP_002828876.1|	-	0.00077	20.0	10.6	0.00077	20.0	10.6	2.1	2	1	0	2	2	2	1	DoxX
EamA	PF00892.20	gi|227827098|ref|YP_002828877.1|	-	5.5e-25	88.1	47.3	2.7e-14	53.5	21.8	2.3	2	1	0	2	2	2	2	EamA-like	transporter	family
ResIII	PF04851.15	gi|227827099|ref|YP_002828878.1|	-	4.7e-23	82.0	0.0	1.2e-22	80.7	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|227827099|ref|YP_002828878.1|	-	1.4e-17	64.1	0.1	5.6e-17	62.1	0.1	2.1	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|227827099|ref|YP_002828878.1|	-	8.3e-12	45.2	0.0	5.4e-11	42.6	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
ERCC3_RAD25_C	PF16203.5	gi|227827099|ref|YP_002828878.1|	-	1.8e-09	37.2	0.1	3.2e-09	36.3	0.1	1.5	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
T2SSE	PF00437.20	gi|227827099|ref|YP_002828878.1|	-	6.5e-05	22.1	0.0	0.00022	20.4	0.0	1.8	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
MerR	PF00376.23	gi|227827099|ref|YP_002828878.1|	-	0.008	15.9	0.2	0.028	14.2	0.0	2.0	2	0	0	2	2	2	1	MerR	family	regulatory	protein
PhoH	PF02562.16	gi|227827099|ref|YP_002828878.1|	-	0.014	14.9	0.0	0.033	13.6	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
DUF2075	PF09848.9	gi|227827099|ref|YP_002828878.1|	-	0.14	11.4	0.0	0.28	10.4	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.6	gi|227827099|ref|YP_002828878.1|	-	0.17	12.2	0.5	2.8	8.2	0.1	2.9	2	1	0	2	2	2	0	AAA	domain
RTX_C	PF08339.10	gi|227827099|ref|YP_002828878.1|	-	1.4	9.0	6.8	0.95	9.5	0.3	2.9	3	0	0	3	3	3	0	RTX	C-terminal	domain
DNA_pol_B	PF00136.21	gi|227827101|ref|YP_002828880.1|	-	3.8e-11	42.4	0.3	5.1e-10	38.7	0.2	2.3	1	1	0	1	1	1	1	DNA	polymerase	family	B
Exonuc_VII_S	PF02609.16	gi|227827102|ref|YP_002828881.1|	-	0.14	12.2	1.5	0.26	11.4	0.2	2.0	2	1	0	2	2	2	0	Exonuclease	VII	small	subunit
PaREP1	PF05942.11	gi|227827103|ref|YP_002828882.1|	-	1.5e-38	131.2	5.2	2e-38	130.8	5.2	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
FliS	PF02561.14	gi|227827103|ref|YP_002828882.1|	-	0.00047	20.4	1.8	0.001	19.3	0.4	1.9	2	0	0	2	2	2	1	Flagellar	protein	FliS
DUF357	PF04010.13	gi|227827103|ref|YP_002828882.1|	-	0.0045	17.0	1.4	0.0083	16.2	0.2	2.1	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF357)
TB2_DP1_HVA22	PF03134.19	gi|227827103|ref|YP_002828882.1|	-	0.013	15.4	0.3	0.02	14.8	0.3	1.3	1	0	0	1	1	1	0	TB2/DP1,	HVA22	family
HEPN	PF05168.14	gi|227827103|ref|YP_002828882.1|	-	0.034	14.3	3.3	0.15	12.2	1.4	2.6	3	0	0	3	3	3	0	HEPN	domain
Phasin_2	PF09361.10	gi|227827103|ref|YP_002828882.1|	-	0.062	13.6	0.5	0.2	11.9	0.4	2.0	2	1	0	2	2	2	0	Phasin	protein
PqqD	PF05402.12	gi|227827103|ref|YP_002828882.1|	-	0.071	13.4	0.4	0.35	11.2	0.0	2.4	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Telomere_reg-2	PF10193.9	gi|227827103|ref|YP_002828882.1|	-	0.15	12.5	0.8	0.25	11.8	0.2	1.7	2	0	0	2	2	2	0	Telomere	length	regulation	protein
Glycos_transf_2	PF00535.26	gi|227827104|ref|YP_002828883.1|	-	2.8e-07	30.5	0.1	4.1e-07	30.0	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_4	PF13704.6	gi|227827104|ref|YP_002828883.1|	-	0.021	15.3	0.0	0.082	13.4	0.0	2.0	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
AA_permease	PF00324.21	gi|227827105|ref|YP_002828884.1|	-	5.3e-09	35.2	49.8	3.3e-08	32.6	49.8	2.1	1	1	0	1	1	1	1	Amino	acid	permease
XdhC_C	PF13478.6	gi|227827106|ref|YP_002828885.1|	-	4.7e-23	82.0	0.0	6.6e-23	81.6	0.0	1.1	1	0	0	1	1	1	1	XdhC	Rossmann	domain
EB_dh	PF09459.10	gi|227827108|ref|YP_002828887.1|	-	2.2e-28	99.9	0.2	3.3e-28	99.3	0.2	1.3	1	0	0	1	1	1	1	Ethylbenzene	dehydrogenase
Metallophos_2	PF12850.7	gi|227827109|ref|YP_002828888.1|	-	3.5e-09	37.1	0.0	4.8e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|227827109|ref|YP_002828888.1|	-	3.5e-09	37.5	0.6	1.5e-08	35.4	0.6	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
PaREP1	PF05942.11	gi|227827110|ref|YP_002828889.1|	-	1.9e-25	89.1	0.8	2e-25	88.9	0.1	1.4	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
Sec7_N	PF12783.7	gi|227827110|ref|YP_002828889.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Guanine	nucleotide	exchange	factor	in	Golgi	transport	N-terminal
E1-E2_ATPase	PF00122.20	gi|227827111|ref|YP_002828890.1|	-	2.3e-51	173.9	0.7	2.3e-51	173.9	0.7	3.4	5	0	0	5	5	5	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|227827111|ref|YP_002828890.1|	-	5.3e-20	72.6	0.1	8.6e-20	71.9	0.1	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|227827111|ref|YP_002828890.1|	-	1.9e-15	56.3	0.0	5e-15	54.9	0.0	1.8	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|227827111|ref|YP_002828890.1|	-	0.00016	21.5	3.1	0.00027	20.8	0.2	2.6	2	1	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|227827111|ref|YP_002828890.1|	-	0.0023	18.0	0.0	0.009	16.1	0.0	1.9	2	0	0	2	2	2	1	Cation	transport	ATPase	(P-type)
FMP23	PF17315.2	gi|227827111|ref|YP_002828890.1|	-	0.09	12.9	0.5	0.22	11.7	0.5	1.6	1	0	0	1	1	1	0	Found	in	mitochondrial	proteome
TusA	PF01206.17	gi|227827112|ref|YP_002828891.1|	-	7e-14	51.4	0.0	7.8e-14	51.3	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
AbrB_C	PF18277.1	gi|227827114|ref|YP_002828893.1|	-	0.15	11.7	0.6	0.53	10.0	0.6	1.8	1	1	0	1	1	1	0	AbrB	C-terminal	domain
T2SSE	PF00437.20	gi|227827115|ref|YP_002828894.1|	-	0.00015	21.0	0.0	0.00025	20.2	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
HEAT_2	PF13646.6	gi|227827115|ref|YP_002828894.1|	-	0.00057	20.2	1.0	1	9.8	0.0	3.9	2	2	2	4	4	4	1	HEAT	repeats
HEAT	PF02985.22	gi|227827115|ref|YP_002828894.1|	-	0.012	15.8	0.6	1e+02	3.6	0.0	5.2	5	0	0	5	5	5	0	HEAT	repeat
tRNA_anti-codon	PF01336.25	gi|227827115|ref|YP_002828894.1|	-	0.025	14.6	0.1	0.31	11.1	0.0	2.7	3	0	0	3	3	3	0	OB-fold	nucleic	acid	binding	domain
ResIII	PF04851.15	gi|227827115|ref|YP_002828894.1|	-	0.039	14.0	0.1	0.11	12.4	0.0	1.7	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Zeta_toxin	PF06414.12	gi|227827115|ref|YP_002828894.1|	-	0.064	12.5	0.0	0.16	11.3	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_14	PF13173.6	gi|227827115|ref|YP_002828894.1|	-	0.083	12.9	0.2	0.41	10.7	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
Glyco_hydro_10	PF00331.20	gi|227827115|ref|YP_002828894.1|	-	0.17	11.0	0.0	0.32	10.1	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	10
TPR_11	PF13414.6	gi|227827118|ref|YP_002828897.1|	-	0.00026	20.6	0.4	0.21	11.3	0.2	2.9	2	0	0	2	2	2	2	TPR	repeat
TPR_17	PF13431.6	gi|227827118|ref|YP_002828897.1|	-	0.0034	17.7	4.4	0.033	14.6	0.0	3.5	4	0	0	4	4	4	1	Tetratricopeptide	repeat
TPR_15	PF13429.6	gi|227827118|ref|YP_002828897.1|	-	0.12	11.6	0.1	0.21	10.8	0.1	1.4	1	1	0	1	1	1	0	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|227827118|ref|YP_002828897.1|	-	0.16	12.5	0.1	0.66	10.5	0.1	1.6	1	1	1	2	2	2	0	Tetratricopeptide	repeat
Wzy_C_2	PF11846.8	gi|227827118|ref|YP_002828897.1|	-	0.17	11.8	0.1	0.27	11.2	0.1	1.2	1	0	0	1	1	1	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
TMEM131_like	PF12371.8	gi|227827119|ref|YP_002828898.1|	-	0.01	16.1	0.3	0.031	14.5	0.3	1.9	1	1	0	1	1	1	0	Transmembrane	protein	131-like
MMS19_C	PF12460.8	gi|227827120|ref|YP_002828899.1|	-	0.058	12.5	2.5	0.26	10.4	1.7	2.3	2	1	0	2	2	2	0	RNAPII	transcription	regulator	C-terminal
Snf7	PF03357.21	gi|227827120|ref|YP_002828899.1|	-	0.11	12.1	0.2	0.11	12.1	0.2	2.0	3	0	0	3	3	3	0	Snf7
DUF218	PF02698.17	gi|227827121|ref|YP_002828900.1|	-	6.2e-23	81.3	0.0	7.4e-23	81.0	0.0	1.1	1	0	0	1	1	1	1	DUF218	domain
MIT	PF04212.18	gi|227827121|ref|YP_002828900.1|	-	0.0036	17.3	0.2	0.0093	16.0	0.2	1.7	1	0	0	1	1	1	1	MIT	(microtubule	interacting	and	transport)	domain
DUF3978	PF13123.6	gi|227827121|ref|YP_002828900.1|	-	0.019	14.7	1.2	0.034	13.9	1.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3978)
TPR_11	PF13414.6	gi|227827121|ref|YP_002828900.1|	-	0.64	9.8	0.1	0.64	9.8	0.1	2.5	3	0	0	3	3	3	0	TPR	repeat
HrcA_DNA-bdg	PF03444.15	gi|227827122|ref|YP_002828901.1|	-	0.00068	19.2	0.0	0.0015	18.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Dimerisation	PF08100.11	gi|227827122|ref|YP_002828901.1|	-	0.0013	18.7	0.1	0.0072	16.3	0.0	2.3	2	1	0	2	2	2	1	Dimerisation	domain
Penicillinase_R	PF03965.16	gi|227827122|ref|YP_002828901.1|	-	0.011	16.1	0.0	0.018	15.4	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_24	PF13412.6	gi|227827122|ref|YP_002828901.1|	-	0.012	15.1	0.1	0.031	13.8	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|227827122|ref|YP_002828901.1|	-	0.026	14.5	0.1	0.063	13.2	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.7	gi|227827122|ref|YP_002828901.1|	-	0.027	14.3	0.0	0.043	13.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
SMC_ScpB	PF04079.16	gi|227827122|ref|YP_002828901.1|	-	0.033	13.8	0.0	0.087	12.4	0.0	1.6	1	1	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_29	PF13551.6	gi|227827122|ref|YP_002828901.1|	-	0.049	13.6	0.0	0.23	11.5	0.0	2.1	2	1	0	2	2	2	0	Winged	helix-turn	helix
HGTP_anticodon	PF03129.20	gi|227827123|ref|YP_002828902.1|	-	8.1e-17	61.2	0.2	2.2e-16	59.8	0.2	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|227827123|ref|YP_002828902.1|	-	1.3e-05	25.3	0.0	2.2e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zinc_ribbon_4	PF13717.6	gi|227827123|ref|YP_002828902.1|	-	0.015	15.2	0.5	0.033	14.1	0.5	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|227827123|ref|YP_002828902.1|	-	0.1	12.2	0.3	0.18	11.3	0.3	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_5	PF13719.6	gi|227827123|ref|YP_002828902.1|	-	0.12	12.1	0.2	0.26	11.1	0.2	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
Metallophos	PF00149.28	gi|227827125|ref|YP_002828904.1|	-	1.1e-13	52.2	1.3	1.6e-13	51.6	1.3	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|227827125|ref|YP_002828904.1|	-	8.6e-11	42.3	0.2	3.5e-06	27.3	0.1	2.1	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
DoxA	PF07680.11	gi|227827125|ref|YP_002828904.1|	-	0.091	12.7	0.5	0.41	10.6	0.0	2.2	3	0	0	3	3	3	0	TQO	small	subunit	DoxA
Peptidase_S15	PF02129.18	gi|227827126|ref|YP_002828905.1|	-	9.6e-15	54.9	0.0	1.1e-14	54.7	0.0	1.2	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
AXE1	PF05448.12	gi|227827126|ref|YP_002828905.1|	-	3.3e-14	52.3	0.1	2.4e-07	29.8	0.0	2.9	2	1	1	3	3	3	2	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_1	PF00561.20	gi|227827126|ref|YP_002828905.1|	-	1.5e-10	41.2	0.0	3.8e-07	30.0	0.0	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|227827126|ref|YP_002828905.1|	-	2.3e-09	36.9	0.0	8.4e-09	35.0	0.0	1.8	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|227827126|ref|YP_002828905.1|	-	9.4e-09	35.0	0.1	1.5e-05	24.6	0.0	2.9	2	1	1	3	3	3	2	Prolyl	oligopeptidase	family
Abhydrolase_6	PF12697.7	gi|227827126|ref|YP_002828905.1|	-	1.6e-08	35.4	0.0	2e-08	35.1	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DUF1100	PF06500.11	gi|227827126|ref|YP_002828905.1|	-	9.1e-07	28.0	0.0	1.8e-06	27.1	0.0	1.4	2	0	0	2	2	2	1	Alpha/beta	hydrolase	of	unknown	function	(DUF1100)
DLH	PF01738.18	gi|227827126|ref|YP_002828905.1|	-	1.5e-05	24.6	0.0	5.2e-05	22.9	0.0	1.8	2	1	0	2	2	2	1	Dienelactone	hydrolase	family
PAF-AH_p_II	PF03403.13	gi|227827126|ref|YP_002828905.1|	-	0.00034	19.2	0.0	0.003	16.1	0.0	1.9	1	1	1	2	2	2	1	Platelet-activating	factor	acetylhydrolase,	isoform	II
Chlorophyllase2	PF12740.7	gi|227827126|ref|YP_002828905.1|	-	0.0005	19.1	0.0	0.0007	18.6	0.0	1.1	1	0	0	1	1	1	1	Chlorophyllase	enzyme
BAAT_C	PF08840.11	gi|227827126|ref|YP_002828905.1|	-	0.00092	19.2	0.0	0.019	14.9	0.0	2.1	2	0	0	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DUF2048	PF09752.9	gi|227827126|ref|YP_002828905.1|	-	0.0022	17.2	0.0	0.0027	16.9	0.0	1.2	1	0	0	1	1	1	1	Abhydrolase	domain	containing	18
4HBT	PF03061.22	gi|227827127|ref|YP_002828906.1|	-	2.8e-11	43.6	0.0	4.1e-11	43.1	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
YiiD_C	PF09500.10	gi|227827127|ref|YP_002828906.1|	-	0.068	13.0	0.0	0.41	10.5	0.0	1.9	1	1	0	1	1	1	0	Putative	thioesterase	(yiiD_Cterm)
AMP-binding	PF00501.28	gi|227827128|ref|YP_002828907.1|	-	2.5e-64	217.4	0.0	3.1e-64	217.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827128|ref|YP_002828907.1|	-	4.3e-09	37.2	0.0	7.9e-09	36.4	0.0	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
PaaX_C	PF08223.11	gi|227827129|ref|YP_002828908.1|	-	1.1e-28	99.4	0.0	2.1e-28	98.5	0.0	1.5	1	0	0	1	1	1	1	PaaX-like	protein	C-terminal	domain
PaaX	PF07848.12	gi|227827129|ref|YP_002828908.1|	-	1.1e-14	54.4	0.1	2e-14	53.6	0.1	1.5	1	0	0	1	1	1	1	PaaX-like	protein
GntR	PF00392.21	gi|227827129|ref|YP_002828908.1|	-	0.01	15.4	0.0	0.025	14.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MukE	PF04288.13	gi|227827129|ref|YP_002828908.1|	-	0.053	12.4	0.1	0.089	11.7	0.1	1.2	1	0	0	1	1	1	0	MukE-like	family
Lip_prot_lig_C	PF10437.9	gi|227827130|ref|YP_002828909.1|	-	0.00019	21.3	0.5	0.00077	19.4	0.0	2.1	2	0	0	2	2	2	1	Bacterial	lipoate	protein	ligase	C-terminus
DUF5605	PF18310.1	gi|227827130|ref|YP_002828909.1|	-	0.053	13.4	0.1	0.12	12.3	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5605)
BPL_LplA_LipB	PF03099.19	gi|227827130|ref|YP_002828909.1|	-	0.1	12.5	0.1	0.15	11.9	0.1	1.3	1	0	0	1	1	1	0	Biotin/lipoate	A/B	protein	ligase	family
AMP-binding	PF00501.28	gi|227827131|ref|YP_002828910.1|	-	4.9e-73	246.1	0.0	5.9e-73	245.9	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827131|ref|YP_002828910.1|	-	6.1e-24	84.8	0.1	1.2e-23	83.8	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
PMBR	PF09373.10	gi|227827131|ref|YP_002828910.1|	-	0.0013	18.8	0.3	14	6.0	0.0	3.8	3	0	0	3	3	3	2	Pseudomurein-binding	repeat
SCP2	PF02036.17	gi|227827132|ref|YP_002828911.1|	-	3.6e-06	27.4	0.0	4.1e-06	27.2	0.0	1.1	1	0	0	1	1	1	1	SCP-2	sterol	transfer	family
ADC	PF06314.11	gi|227827134|ref|YP_002828913.1|	-	1.1e-39	136.4	0.0	1.3e-39	136.2	0.0	1.0	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
DDE_Tnp_2	PF04693.12	gi|227827135|ref|YP_002828914.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227827135|ref|YP_002828914.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227827135|ref|YP_002828914.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
Amidohydro_2	PF04909.14	gi|227827136|ref|YP_002828915.1|	-	9.3e-29	101.1	0.0	1.1e-28	100.8	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase
Sugar_tr	PF00083.24	gi|227827137|ref|YP_002828916.1|	-	1.2e-46	159.5	33.5	4e-46	157.8	33.5	1.7	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227827137|ref|YP_002828916.1|	-	3.5e-37	128.1	60.8	1.1e-31	110.1	37.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.20	gi|227827137|ref|YP_002828916.1|	-	0.00012	20.6	2.3	0.00012	20.6	2.3	3.3	2	1	1	3	3	3	2	Organic	Anion	Transporter	Polypeptide	(OATP)	family
MFS_3	PF05977.13	gi|227827137|ref|YP_002828916.1|	-	0.49	8.7	13.1	0.1	10.9	1.0	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
MR_MLE_C	PF13378.6	gi|227827138|ref|YP_002828917.1|	-	2.1e-56	191.0	0.0	2.7e-56	190.6	0.0	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227827138|ref|YP_002828917.1|	-	1.1e-05	25.6	0.0	2.3e-05	24.6	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
His_biosynth	PF00977.21	gi|227827138|ref|YP_002828917.1|	-	0.0097	15.4	0.0	0.017	14.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHquinase_I	PF01487.15	gi|227827138|ref|YP_002828917.1|	-	0.041	14.1	0.0	0.067	13.4	0.0	1.3	1	0	0	1	1	1	0	Type	I	3-dehydroquinase
AMP-binding	PF00501.28	gi|227827139|ref|YP_002828918.1|	-	2.3e-89	300.0	0.0	2.7e-89	299.7	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827139|ref|YP_002828918.1|	-	5.6e-18	65.7	0.2	1.5e-17	64.3	0.2	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
MaoC_dehydratas	PF01575.19	gi|227827140|ref|YP_002828919.1|	-	4.6e-27	94.0	0.1	6e-27	93.7	0.1	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|227827140|ref|YP_002828919.1|	-	7.4e-07	29.4	0.0	1.1e-06	28.8	0.0	1.2	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.22	gi|227827140|ref|YP_002828919.1|	-	0.0026	18.1	0.0	0.0057	17.0	0.0	1.6	1	0	0	1	1	1	1	Thioesterase	superfamily
OB_aCoA_assoc	PF01796.17	gi|227827141|ref|YP_002828920.1|	-	4.1e-13	49.1	0.0	6.4e-13	48.5	0.0	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|227827141|ref|YP_002828920.1|	-	9.2e-11	41.4	0.1	1.4e-10	40.9	0.1	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Thiolase_N	PF00108.23	gi|227827142|ref|YP_002828921.1|	-	1.5e-23	83.5	0.0	2.4e-23	82.9	0.0	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227827142|ref|YP_002828921.1|	-	7.8e-09	35.2	0.1	2.4e-06	27.2	0.1	2.8	2	0	0	2	2	2	2	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|227827142|ref|YP_002828921.1|	-	3.3e-07	30.2	7.0	3.3e-06	26.9	1.1	2.9	3	1	1	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|227827142|ref|YP_002828921.1|	-	5.6e-07	29.3	0.3	3.6e-05	23.5	0.1	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
FAE1_CUT1_RppA	PF08392.12	gi|227827142|ref|YP_002828921.1|	-	0.00041	19.7	0.0	0.00076	18.9	0.0	1.3	1	0	0	1	1	1	1	FAE1/Type	III	polyketide	synthase-like	protein
SpoVAD	PF07451.11	gi|227827142|ref|YP_002828921.1|	-	0.056	12.1	0.2	0.15	10.7	0.1	1.7	2	0	0	2	2	2	0	Stage	V	sporulation	protein	AD	(SpoVAD)
Thiolase_C	PF02803.18	gi|227827143|ref|YP_002828922.1|	-	6.2e-07	29.1	0.2	2.3e-06	27.3	0.0	2.0	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Thiolase_N	PF00108.23	gi|227827143|ref|YP_002828922.1|	-	0.0033	16.8	0.0	0.0056	16.1	0.0	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
DUF35_N	PF12172.8	gi|227827144|ref|YP_002828923.1|	-	1e-10	41.3	0.1	1.4e-10	40.8	0.1	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|227827144|ref|YP_002828923.1|	-	2.7e-05	24.1	0.0	3.8e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
HypA	PF01155.19	gi|227827144|ref|YP_002828923.1|	-	0.0056	16.7	0.1	0.01	15.9	0.1	1.5	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|227827144|ref|YP_002828923.1|	-	0.01	15.7	1.3	1.2	9.0	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
FdhE	PF04216.12	gi|227827144|ref|YP_002828923.1|	-	0.013	15.4	0.1	0.02	14.8	0.1	1.3	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
zinc_ribbon_4	PF13717.6	gi|227827144|ref|YP_002828923.1|	-	0.015	15.2	2.2	0.069	13.1	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|227827144|ref|YP_002828923.1|	-	0.035	13.8	0.1	0.046	13.4	0.1	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DUF951	PF06107.11	gi|227827144|ref|YP_002828923.1|	-	0.036	14.0	0.2	0.085	12.8	0.2	1.7	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF951)
DUF2387	PF09526.10	gi|227827144|ref|YP_002828923.1|	-	0.042	14.0	2.3	1.3	9.2	0.1	2.6	2	1	1	3	3	3	0	Probable	metal-binding	protein	(DUF2387)
TF_Zn_Ribbon	PF08271.12	gi|227827144|ref|YP_002828923.1|	-	0.065	12.8	2.2	10	5.7	0.1	3.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
zinc_ribbon_5	PF13719.6	gi|227827144|ref|YP_002828923.1|	-	0.098	12.4	1.0	0.63	9.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|227827144|ref|YP_002828923.1|	-	0.13	12.7	0.7	6.4	7.2	0.2	2.2	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Nudix_N_2	PF14803.6	gi|227827144|ref|YP_002828923.1|	-	0.23	11.4	6.3	1.5	8.8	0.8	2.3	1	1	1	2	2	2	0	Nudix	N-terminal
zf-ACC	PF17848.1	gi|227827144|ref|YP_002828923.1|	-	0.52	10.4	4.3	2	8.6	0.1	2.6	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|227827144|ref|YP_002828923.1|	-	0.7	10.1	6.0	3.3	7.9	6.0	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|227827144|ref|YP_002828923.1|	-	1.3	8.5	4.8	2.5	7.6	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Lactamase_B	PF00753.27	gi|227827145|ref|YP_002828924.1|	-	1.7e-27	96.7	0.0	4.7e-27	95.3	0.0	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227827145|ref|YP_002828924.1|	-	9.4e-05	22.0	0.0	0.00013	21.5	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|227827145|ref|YP_002828924.1|	-	0.00035	20.1	0.4	0.00071	19.1	0.4	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
FKBP26_C	PF18046.1	gi|227827145|ref|YP_002828924.1|	-	0.12	12.4	1.5	1.3	9.2	0.1	2.8	2	0	0	2	2	2	0	FKBP26_C-terminal
DUF294	PF03445.13	gi|227827145|ref|YP_002828924.1|	-	0.19	11.6	0.1	0.48	10.2	0.0	1.6	2	0	0	2	2	2	0	Putative	nucleotidyltransferase	DUF294
SCP2	PF02036.17	gi|227827146|ref|YP_002828925.1|	-	2.1e-15	57.0	0.0	1.3e-07	32.0	0.0	2.1	2	0	0	2	2	2	2	SCP-2	sterol	transfer	family
Alkyl_sulf_C	PF14864.6	gi|227827146|ref|YP_002828925.1|	-	1.9e-07	31.4	0.0	0.00097	19.4	0.0	2.1	2	0	0	2	2	2	2	Alkyl	sulfatase	C-terminal
GerA	PF03323.13	gi|227827146|ref|YP_002828925.1|	-	0.034	12.6	0.5	0.05	12.1	0.5	1.1	1	0	0	1	1	1	0	Bacillus/Clostridium	GerA	spore	germination	protein
Acyl-CoA_dh_1	PF00441.24	gi|227827147|ref|YP_002828926.1|	-	1.1e-33	116.5	0.0	1.5e-33	116.1	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|227827147|ref|YP_002828926.1|	-	9.2e-24	84.3	0.1	2.3e-23	83.0	0.1	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227827147|ref|YP_002828926.1|	-	2.1e-20	72.7	0.0	3.7e-20	71.9	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|227827147|ref|YP_002828926.1|	-	6.3e-08	33.0	0.0	1e-07	32.3	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HTH_27	PF13463.6	gi|227827147|ref|YP_002828926.1|	-	0.01	16.3	0.0	0.023	15.2	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|227827147|ref|YP_002828926.1|	-	0.088	12.7	0.2	0.19	11.6	0.2	1.6	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Lip_prot_lig_C	PF10437.9	gi|227827148|ref|YP_002828927.1|	-	0.0036	17.3	0.1	0.013	15.5	0.1	2.0	2	0	0	2	2	2	1	Bacterial	lipoate	protein	ligase	C-terminus
DUF573	PF04504.14	gi|227827148|ref|YP_002828927.1|	-	0.024	15.3	0.1	0.059	14.0	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF573
3HCDH_N	PF02737.18	gi|227827149|ref|YP_002828928.1|	-	1.2e-66	224.1	0.5	2.1e-66	223.2	0.5	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ECH_1	PF00378.20	gi|227827149|ref|YP_002828928.1|	-	1.1e-50	172.3	0.0	2.3e-50	171.3	0.0	1.5	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
3HCDH	PF00725.22	gi|227827149|ref|YP_002828928.1|	-	1e-42	144.7	0.1	1.6e-24	86.4	0.2	2.5	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
ECH_2	PF16113.5	gi|227827149|ref|YP_002828928.1|	-	3.7e-34	118.7	0.1	5.2e-33	115.0	0.0	2.4	2	1	1	3	3	3	1	Enoyl-CoA	hydratase/isomerase
NAD_binding_2	PF03446.15	gi|227827149|ref|YP_002828928.1|	-	4.5e-06	26.9	0.1	9.6e-06	25.8	0.1	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|227827149|ref|YP_002828928.1|	-	0.074	12.4	0.1	0.16	11.3	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|227827149|ref|YP_002828928.1|	-	0.074	13.6	0.6	0.21	12.2	0.1	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.21	gi|227827149|ref|YP_002828928.1|	-	0.094	12.0	0.1	0.17	11.1	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
AMP-binding	PF00501.28	gi|227827150|ref|YP_002828929.1|	-	8.2e-83	278.3	0.0	1.2e-82	277.9	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827150|ref|YP_002828929.1|	-	4.1e-18	66.1	0.4	9.5e-18	65.0	0.0	1.8	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
MFS_1	PF07690.16	gi|227827151|ref|YP_002828930.1|	-	8.4e-31	107.2	54.9	4.7e-17	62.0	25.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
P5-ATPase	PF12409.8	gi|227827151|ref|YP_002828930.1|	-	5.2	7.2	13.9	0.3	11.2	1.4	2.9	3	0	0	3	3	3	0	P5-type	ATPase	cation	transporter
Molybdopterin	PF00384.22	gi|227827152|ref|YP_002828931.1|	-	2.9e-147	491.1	0.0	3.5e-147	490.8	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|227827152|ref|YP_002828931.1|	-	1.1e-21	76.9	0.1	2.7e-21	75.7	0.1	1.7	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Nitr_red_alph_N	PF14710.6	gi|227827152|ref|YP_002828931.1|	-	0.0024	18.3	6.9	0.0069	16.8	6.9	1.8	1	0	0	1	1	1	1	Respiratory	nitrate	reductase	alpha	N-terminal
Fer4_11	PF13247.6	gi|227827153|ref|YP_002828932.1|	-	2.2e-37	127.2	7.3	4.4e-37	126.2	7.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Nitr_red_bet_C	PF14711.6	gi|227827153|ref|YP_002828932.1|	-	9.4e-22	76.5	0.0	1.7e-21	75.7	0.0	1.4	1	0	0	1	1	1	1	Respiratory	nitrate	reductase	beta	C-terminal
Fer4_10	PF13237.6	gi|227827153|ref|YP_002828932.1|	-	9.6e-10	38.4	16.5	4.7e-07	29.8	4.6	3.3	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227827153|ref|YP_002828932.1|	-	4.8e-09	35.9	21.1	0.018	15.1	0.1	4.4	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227827153|ref|YP_002828932.1|	-	6.4e-06	26.7	19.5	0.025	15.1	8.7	3.6	2	1	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227827153|ref|YP_002828932.1|	-	0.00013	22.0	19.1	0.29	11.3	0.4	3.3	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227827153|ref|YP_002828932.1|	-	0.00016	21.6	23.2	0.005	16.9	1.4	4.4	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|227827153|ref|YP_002828932.1|	-	0.00021	20.9	20.2	0.0052	16.6	1.6	4.6	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|227827153|ref|YP_002828932.1|	-	0.00033	20.9	20.6	0.13	12.8	1.1	4.1	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227827153|ref|YP_002828932.1|	-	0.041	14.0	18.5	0.18	12.0	1.7	2.9	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227827153|ref|YP_002828932.1|	-	1.6	9.3	17.4	2.8	8.6	0.1	3.7	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227827153|ref|YP_002828932.1|	-	2.2	9.1	8.7	11	6.9	0.0	3.6	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.6	gi|227827153|ref|YP_002828932.1|	-	7.8	7.5	16.9	74	4.4	0.6	3.7	2	1	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.6	gi|227827153|ref|YP_002828932.1|	-	9.3	6.9	9.3	2.2	8.9	0.1	3.3	2	1	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Nitrate_red_gam	PF02665.14	gi|227827155|ref|YP_002828934.1|	-	3e-71	239.5	20.1	3.3e-71	239.3	20.1	1.0	1	0	0	1	1	1	1	Nitrate	reductase	gamma	subunit
DEDD_Tnp_IS110	PF01548.17	gi|227827157|ref|YP_002828936.1|	-	1.2e-09	38.3	0.0	1.8e-09	37.6	0.0	1.2	1	0	0	1	1	1	1	Transposase
DEDD_Tnp_IS110	PF01548.17	gi|227827158|ref|YP_002828937.1|	-	0.034	14.0	0.1	0.046	13.6	0.1	1.3	1	1	0	1	1	1	0	Transposase
Pyr_redox_2	PF07992.14	gi|227827159|ref|YP_002828938.1|	-	1.6e-47	162.2	0.3	2.3e-47	161.6	0.3	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227827159|ref|YP_002828938.1|	-	1.7e-21	76.6	3.4	4.5e-15	56.0	0.4	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227827159|ref|YP_002828938.1|	-	1.3e-16	60.7	2.0	9.5e-15	54.6	2.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227827159|ref|YP_002828938.1|	-	1.9e-11	43.7	5.8	0.0025	17.0	0.3	4.0	3	2	1	4	4	4	3	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|227827159|ref|YP_002828938.1|	-	3.5e-11	43.2	0.3	3.9e-06	27.0	0.1	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_dim	PF02852.22	gi|227827159|ref|YP_002828938.1|	-	6.2e-11	42.5	0.0	5.9e-10	39.4	0.0	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
HI0933_like	PF03486.14	gi|227827159|ref|YP_002828938.1|	-	2.4e-10	39.7	3.7	4.8e-06	25.5	0.1	3.5	2	2	1	4	4	4	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|227827159|ref|YP_002828938.1|	-	1.1e-08	34.7	0.4	7.9e-05	22.1	0.1	2.3	2	0	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|227827159|ref|YP_002828938.1|	-	3.5e-08	33.2	0.0	0.00049	19.6	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|227827159|ref|YP_002828938.1|	-	1.9e-07	30.5	3.0	0.0001	21.5	0.2	3.2	3	0	0	3	3	3	1	FAD	binding	domain
DAO	PF01266.24	gi|227827159|ref|YP_002828938.1|	-	1.5e-06	28.0	1.1	2.3e-05	24.1	0.2	2.6	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|227827159|ref|YP_002828938.1|	-	1.2e-05	24.7	0.4	0.013	14.8	0.0	3.0	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|227827159|ref|YP_002828938.1|	-	2.8e-05	23.5	0.7	0.00027	20.3	0.0	2.5	2	1	0	2	2	2	1	Thi4	family
NAD_binding_9	PF13454.6	gi|227827159|ref|YP_002828938.1|	-	0.0001	22.3	0.3	0.024	14.6	0.0	3.2	2	1	1	3	3	3	1	FAD-NAD(P)-binding
Trp_halogenase	PF04820.14	gi|227827159|ref|YP_002828938.1|	-	0.00028	19.9	0.7	0.0071	15.2	0.1	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|227827159|ref|YP_002828938.1|	-	0.00057	19.0	2.4	0.22	10.5	0.1	3.6	3	1	1	4	4	4	1	Lycopene	cyclase	protein
TrkA_N	PF02254.18	gi|227827159|ref|YP_002828938.1|	-	0.00079	19.7	0.6	0.38	11.0	0.0	2.8	3	0	0	3	3	3	1	TrkA-N	domain
Amino_oxidase	PF01593.24	gi|227827159|ref|YP_002828938.1|	-	0.0034	16.7	0.1	0.48	9.6	0.0	2.9	3	0	0	3	3	3	1	Flavin	containing	amine	oxidoreductase
ApbA	PF02558.16	gi|227827159|ref|YP_002828938.1|	-	0.0037	16.9	0.6	1.9	8.1	0.0	2.5	2	0	0	2	2	2	2	Ketopantoate	reductase	PanE/ApbA
DUF1188	PF06690.11	gi|227827159|ref|YP_002828938.1|	-	0.0079	15.8	0.7	3.8	7.0	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1188)
NAD_binding_7	PF13241.6	gi|227827159|ref|YP_002828938.1|	-	0.013	15.9	0.1	0.72	10.3	0.0	2.4	2	0	0	2	2	2	0	Putative	NAD(P)-binding
DpaA_N	PF16924.5	gi|227827159|ref|YP_002828938.1|	-	0.029	14.5	0.2	0.29	11.2	0.0	2.7	3	0	0	3	3	2	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
E1_dh	PF00676.20	gi|227827160|ref|YP_002828939.1|	-	1.8e-90	302.9	0.0	2.3e-90	302.6	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
TPP_enzyme_C	PF02775.21	gi|227827160|ref|YP_002828939.1|	-	4e-10	39.7	0.4	6.2e-10	39.1	0.4	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|227827160|ref|YP_002828939.1|	-	1.7e-07	30.8	0.1	4.7e-07	29.3	0.1	1.7	1	1	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
Transketolase_N	PF00456.21	gi|227827160|ref|YP_002828939.1|	-	0.0047	15.9	0.0	0.0076	15.2	0.0	1.3	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
SpoVS	PF04232.12	gi|227827160|ref|YP_002828939.1|	-	0.033	13.9	0.1	0.13	12.0	0.2	1.9	2	0	0	2	2	2	0	Stage	V	sporulation	protein	S	(SpoVS)
Transket_pyr	PF02779.24	gi|227827161|ref|YP_002828940.1|	-	6e-59	198.7	0.0	1.3e-57	194.3	0.0	2.0	2	0	0	2	2	2	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|227827161|ref|YP_002828940.1|	-	1.4e-41	141.3	0.0	2.7e-41	140.3	0.0	1.5	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|227827161|ref|YP_002828940.1|	-	0.0015	18.8	0.0	0.0032	17.7	0.0	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
NAD_kinase	PF01513.21	gi|227827162|ref|YP_002828941.1|	-	2e-13	50.2	0.1	3.4e-12	46.2	0.0	2.1	2	0	0	2	2	2	2	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|227827162|ref|YP_002828941.1|	-	4e-07	29.7	0.1	4.9e-06	26.2	0.1	2.1	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
2-oxoacid_dh	PF00198.23	gi|227827163|ref|YP_002828942.1|	-	2.4e-79	266.1	1.8	3.4e-79	265.6	1.8	1.2	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.22	gi|227827163|ref|YP_002828942.1|	-	6.5e-18	64.3	3.2	6.5e-18	64.3	3.2	2.5	2	0	0	2	2	2	1	Biotin-requiring	enzyme
E3_binding	PF02817.17	gi|227827163|ref|YP_002828942.1|	-	3.5e-15	56.0	7.3	4.1e-15	55.8	1.0	2.8	3	0	0	3	3	3	1	e3	binding	domain
Biotin_lipoyl_2	PF13533.6	gi|227827163|ref|YP_002828942.1|	-	7.2e-09	35.3	1.4	6.8e-05	22.6	0.5	2.6	1	1	1	2	2	2	2	Biotin-lipoyl	like
Peptidase_M23	PF01551.22	gi|227827163|ref|YP_002828942.1|	-	0.0055	16.9	0.1	0.012	15.9	0.1	1.5	1	0	0	1	1	1	1	Peptidase	family	M23
CAT	PF00302.18	gi|227827163|ref|YP_002828942.1|	-	0.0067	16.4	0.0	0.01	15.8	0.0	1.2	1	0	0	1	1	1	1	Chloramphenicol	acetyltransferase
Transferase	PF02458.15	gi|227827163|ref|YP_002828942.1|	-	0.028	13.1	0.0	0.049	12.3	0.0	1.3	1	0	0	1	1	1	0	Transferase	family
QRPTase_N	PF02749.16	gi|227827163|ref|YP_002828942.1|	-	0.043	13.9	0.2	4.2	7.5	0.1	2.6	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
HlyD_3	PF13437.6	gi|227827163|ref|YP_002828942.1|	-	0.051	14.3	4.2	8.3	7.2	0.1	3.4	2	1	1	3	3	3	0	HlyD	family	secretion	protein
PTS_EIIA_1	PF00358.20	gi|227827163|ref|YP_002828942.1|	-	0.8	9.5	4.6	0.45	10.3	0.2	2.7	3	1	1	4	4	4	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
Ring_hydroxyl_B	PF00866.18	gi|227827164|ref|YP_002828943.1|	-	3.9e-22	78.9	0.4	4.4e-22	78.7	0.4	1.0	1	0	0	1	1	1	1	Ring	hydroxylating	beta	subunit
Rieske	PF00355.26	gi|227827165|ref|YP_002828944.1|	-	5.1e-18	64.8	0.0	8.5e-18	64.1	0.0	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Ring_hydroxyl_A	PF00848.19	gi|227827165|ref|YP_002828944.1|	-	1.1e-15	58.2	0.0	2.2e-15	57.2	0.0	1.5	1	1	0	1	1	1	1	Ring	hydroxylating	alpha	subunit	(catalytic	domain)
UbiD	PF01977.16	gi|227827166|ref|YP_002828945.1|	-	4.4e-107	358.4	0.0	5.2e-107	358.2	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
ADH_N	PF08240.12	gi|227827167|ref|YP_002828946.1|	-	2.3e-32	111.1	0.1	3.5e-32	110.5	0.1	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227827167|ref|YP_002828946.1|	-	1.2e-21	77.0	0.1	1.9e-21	76.4	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227827167|ref|YP_002828946.1|	-	6.2e-18	66.1	0.0	9e-18	65.6	0.0	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
MFS_1	PF07690.16	gi|227827168|ref|YP_002828947.1|	-	1.5e-21	76.8	44.5	1.5e-21	76.8	44.5	2.2	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227827168|ref|YP_002828947.1|	-	2.9e-20	72.6	27.2	2.2e-13	49.9	6.3	2.1	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
CrgA	PF06781.12	gi|227827168|ref|YP_002828947.1|	-	9	6.4	7.9	0.26	11.4	0.1	2.6	3	0	0	3	3	3	0	Cell	division	protein	CrgA
HTH_10	PF04967.12	gi|227827169|ref|YP_002828948.1|	-	2.1e-21	75.4	0.1	4.1e-21	74.5	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_5	PF01022.20	gi|227827169|ref|YP_002828948.1|	-	0.0033	17.3	0.0	0.0081	16.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|227827169|ref|YP_002828948.1|	-	0.0074	15.8	0.1	0.02	14.4	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Med30	PF11315.8	gi|227827169|ref|YP_002828948.1|	-	0.12	12.6	0.2	3.6	7.8	0.1	2.3	2	0	0	2	2	2	0	Mediator	complex	subunit	30
MerR	PF00376.23	gi|227827169|ref|YP_002828948.1|	-	0.24	11.2	0.0	0.24	11.2	0.0	2.4	3	0	0	3	3	3	0	MerR	family	regulatory	protein
AMP-binding	PF00501.28	gi|227827170|ref|YP_002828949.1|	-	1.7e-82	277.3	0.0	2.2e-82	276.9	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827170|ref|YP_002828949.1|	-	1.2e-22	80.7	0.5	2.2e-22	79.8	0.5	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ECH_1	PF00378.20	gi|227827171|ref|YP_002828950.1|	-	5.9e-58	196.1	0.0	6.8e-58	195.9	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|227827171|ref|YP_002828950.1|	-	6.1e-37	127.9	0.0	5.5e-31	108.3	0.1	2.4	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
Ald_Xan_dh_C2	PF02738.18	gi|227827172|ref|YP_002828951.1|	-	5.3e-121	404.8	0.0	6.1e-121	404.6	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227827172|ref|YP_002828951.1|	-	4.7e-25	88.1	0.0	8.2e-25	87.3	0.0	1.4	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
CcdA	PF07362.12	gi|227827173|ref|YP_002828952.1|	-	7.6e-06	26.3	2.9	9.2e-06	26.0	2.6	1.3	1	1	0	1	1	1	1	Post-segregation	antitoxin	CcdA
PSK_trans_fac	PF07704.11	gi|227827173|ref|YP_002828952.1|	-	0.00027	21.6	3.7	0.0003	21.5	3.7	1.1	1	0	0	1	1	1	1	Rv0623-like	transcription	factor
DUF816	PF05674.12	gi|227827173|ref|YP_002828952.1|	-	0.00044	20.2	1.3	0.00049	20.1	1.3	1.0	1	0	0	1	1	1	1	Baculovirus	protein	of	unknown	function	(DUF816)
YqaH	PF17448.2	gi|227827173|ref|YP_002828952.1|	-	0.0013	18.9	0.9	0.0016	18.7	0.9	1.1	1	0	0	1	1	1	1	Uncharacterized	YqaH-like
Ran-binding	PF05508.11	gi|227827173|ref|YP_002828952.1|	-	0.0093	15.0	4.1	0.011	14.7	4.1	1.0	1	0	0	1	1	1	1	RanGTP-binding	protein
DUF4145	PF13643.6	gi|227827173|ref|YP_002828952.1|	-	0.011	15.8	1.6	0.016	15.3	1.6	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4145)
DUF3347	PF11827.8	gi|227827173|ref|YP_002828952.1|	-	0.051	13.8	2.3	0.057	13.6	2.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3347)
Dynein_light	PF01221.18	gi|227827173|ref|YP_002828952.1|	-	0.054	13.8	2.6	0.12	12.7	2.6	1.6	1	1	0	1	1	1	0	Dynein	light	chain	type	1
YpjP	PF14005.6	gi|227827173|ref|YP_002828952.1|	-	0.13	12.3	1.5	0.14	12.2	1.5	1.1	1	0	0	1	1	1	0	YpjP-like	protein
YtxH	PF12732.7	gi|227827173|ref|YP_002828952.1|	-	0.16	12.6	5.4	0.21	12.1	5.4	1.2	1	0	0	1	1	1	0	YtxH-like	protein
YojJ	PF10372.9	gi|227827173|ref|YP_002828952.1|	-	0.25	11.4	4.3	0.13	12.3	1.7	1.7	1	1	1	2	2	2	0	Bacterial	membrane-spanning	protein	N-terminus
Histone_HNS	PF00816.21	gi|227827173|ref|YP_002828952.1|	-	1.6	9.6	6.2	3.6	8.5	3.0	2.0	1	1	1	2	2	2	0	H-NS	histone	family
PIN	PF01850.21	gi|227827174|ref|YP_002828953.1|	-	2.2e-08	34.6	0.2	3.1e-08	34.2	0.2	1.2	1	0	0	1	1	1	1	PIN	domain
DDE_Tnp_2	PF04693.12	gi|227827175|ref|YP_002828954.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227827175|ref|YP_002828954.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227827175|ref|YP_002828954.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
Cas_Csa5	PF09702.10	gi|227827176|ref|YP_002828955.1|	-	0.012	15.9	0.1	0.74	10.1	0.1	2.1	1	1	0	1	1	1	0	CRISPR-associated	protein	(Cas_Csa5)
DevR	PF01905.16	gi|227827177|ref|YP_002828956.1|	-	1.1e-79	267.3	0.8	1.3e-79	267.1	0.8	1.0	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
Baculo_gp64	PF03273.13	gi|227827177|ref|YP_002828956.1|	-	0.0041	16.0	0.0	0.011	14.6	0.0	1.5	1	1	1	2	2	2	1	Baculovirus	gp64	envelope	glycoprotein	family
Cas_Cas5d	PF09704.10	gi|227827178|ref|YP_002828957.1|	-	0.0054	16.6	0.0	1.9	8.3	0.0	2.1	2	0	0	2	2	2	2	CRISPR-associated	protein	(Cas_Cas5)
Ribosomal_S24e	PF01282.19	gi|227827178|ref|YP_002828957.1|	-	0.11	12.4	0.1	0.25	11.3	0.1	1.5	1	0	0	1	1	1	0	Ribosomal	protein	S24e
Helicase_C	PF00271.31	gi|227827180|ref|YP_002828959.1|	-	2.3e-09	37.6	0.8	6e-09	36.2	0.8	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|227827180|ref|YP_002828959.1|	-	1.7e-08	34.4	0.2	4.6e-06	26.5	0.0	3.5	3	1	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|227827180|ref|YP_002828959.1|	-	6.9e-07	29.4	0.0	9e-06	25.8	0.0	2.7	3	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
DUF4996	PF16387.5	gi|227827180|ref|YP_002828959.1|	-	0.11	13.0	0.1	0.45	11.0	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function
HD_6	PF18019.1	gi|227827181|ref|YP_002828960.1|	-	0.0048	17.1	0.0	0.023	14.8	0.0	1.9	1	1	0	1	1	1	1	HD	domain
HD	PF01966.22	gi|227827181|ref|YP_002828960.1|	-	0.01	16.1	0.0	0.017	15.3	0.0	1.5	1	1	0	1	1	1	0	HD	domain
Ribonuc_red_sm	PF00268.21	gi|227827181|ref|YP_002828960.1|	-	0.096	12.1	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	Ribonucleotide	reductase,	small	chain
CRISPR_Cas2	PF09827.9	gi|227827182|ref|YP_002828961.1|	-	1.8e-21	76.1	0.5	2.2e-21	75.8	0.5	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
T3RM_EcoP15I_C	PF18273.1	gi|227827182|ref|YP_002828961.1|	-	0.024	14.9	0.5	0.035	14.4	0.1	1.4	2	0	0	2	2	2	0	Type	III	R-M	EcoP15I	C-terminal	domain
Cas_Cas1	PF01867.16	gi|227827183|ref|YP_002828962.1|	-	4.7e-60	203.1	0.0	6.2e-60	202.7	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
BRCT_3	PF18428.1	gi|227827183|ref|YP_002828962.1|	-	0.04	14.0	0.0	0.079	13.0	0.0	1.4	1	0	0	1	1	1	0	BRCA1	C	Terminus	(BRCT)	domain
Com_YlbF	PF06133.11	gi|227827183|ref|YP_002828962.1|	-	0.1	13.2	1.2	1.4	9.5	0.1	2.3	2	0	0	2	2	2	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
Cas6_N	PF17952.1	gi|227827184|ref|YP_002828963.1|	-	9.9e-42	141.8	4.8	1.5e-41	141.2	4.8	1.3	1	0	0	1	1	1	1	Cas6	N-terminal	domain
CRISPR_Cas6	PF10040.9	gi|227827184|ref|YP_002828963.1|	-	5e-18	65.5	0.1	8.1e-18	64.9	0.1	1.3	1	0	0	1	1	1	1	CRISPR-associated	endoribonuclease	Cas6
RAMPs	PF03787.15	gi|227827184|ref|YP_002828963.1|	-	0.02	14.9	0.3	0.027	14.5	0.3	1.4	1	1	0	1	1	1	0	RAMP	superfamily
DUF2535	PF10751.9	gi|227827184|ref|YP_002828963.1|	-	0.083	13.4	2.8	0.11	13.0	0.2	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2535)
Cas_Cas6	PF01881.16	gi|227827184|ref|YP_002828963.1|	-	0.1	13.1	1.6	0.16	12.5	1.3	1.6	1	1	0	1	1	1	0	CRISPR	associated	protein	Cas6
DDE_Tnp_IS240	PF13610.6	gi|227827185|ref|YP_002828964.1|	-	1.2e-05	25.5	1.2	2.1e-05	24.8	1.0	1.4	2	0	0	2	2	2	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227827185|ref|YP_002828964.1|	-	0.011	15.2	0.2	0.021	14.3	0.2	1.4	1	0	0	1	1	1	0	Transposase	IS66	family
DUF4259	PF14078.6	gi|227827186|ref|YP_002828965.1|	-	0.065	14.0	0.0	0.1	13.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4259)
DDE_Tnp_2	PF04693.12	gi|227827187|ref|YP_002828966.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227827187|ref|YP_002828966.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227827187|ref|YP_002828966.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
Cas_Cas4	PF01930.17	gi|227827188|ref|YP_002828967.1|	-	1.6e-31	109.6	0.2	1.9e-31	109.4	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|227827188|ref|YP_002828967.1|	-	6.4e-07	29.5	0.1	7.5e-07	29.3	0.1	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Csa1	PF06023.12	gi|227827189|ref|YP_002828968.1|	-	6.5e-119	396.6	0.0	7.2e-119	396.5	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
RAMPs	PF03787.15	gi|227827190|ref|YP_002828969.1|	-	2.6e-15	57.0	4.1	1.3e-14	54.8	4.1	1.9	1	1	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.15	gi|227827191|ref|YP_002828970.1|	-	0.0016	18.6	2.6	0.0034	17.5	2.6	1.5	1	1	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.15	gi|227827192|ref|YP_002828971.1|	-	3.4e-10	40.3	0.0	8.1e-10	39.1	0.0	1.6	1	1	0	1	1	1	1	RAMP	superfamily
HD	PF01966.22	gi|227827193|ref|YP_002828972.1|	-	2e-07	31.3	0.3	1.1e-06	28.8	0.1	2.2	2	0	0	2	2	2	1	HD	domain
FYVE_2	PF02318.16	gi|227827193|ref|YP_002828972.1|	-	0.041	14.1	1.0	0.26	11.5	0.1	2.4	2	0	0	2	2	2	0	FYVE-type	zinc	finger
zf-piccolo	PF05715.13	gi|227827193|ref|YP_002828972.1|	-	0.045	13.9	0.2	0.045	13.9	0.2	1.7	2	0	0	2	2	2	0	Piccolo	Zn-finger
Repressor_Mnt	PF11423.8	gi|227827193|ref|YP_002828972.1|	-	0.23	11.3	4.9	14	5.5	0.8	3.4	3	0	0	3	3	3	0	Regulatory	protein	Mnt
DUF2067	PF09840.9	gi|227827193|ref|YP_002828972.1|	-	0.36	10.4	3.7	9	5.8	0.0	4.4	4	2	1	5	5	5	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
RAMPs	PF03787.15	gi|227827194|ref|YP_002828973.1|	-	1.5e-09	38.2	0.0	2.9e-09	37.3	0.0	1.7	1	1	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.15	gi|227827195|ref|YP_002828974.1|	-	3.9e-22	79.4	0.0	1.2e-21	77.8	0.0	1.8	1	1	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.15	gi|227827196|ref|YP_002828975.1|	-	6.2e-20	72.2	0.1	1.3e-19	71.1	0.1	1.5	1	1	0	1	1	1	1	RAMP	superfamily
EspG	PF06872.11	gi|227827197|ref|YP_002828976.1|	-	0.02	13.5	0.0	0.023	13.3	0.0	1.1	1	0	0	1	1	1	0	EspG	protein
TrmB	PF01978.19	gi|227827198|ref|YP_002828977.1|	-	5e-07	29.5	0.3	1.1e-06	28.5	0.3	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|227827198|ref|YP_002828977.1|	-	5.6e-07	29.3	0.1	1.2e-06	28.3	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|227827198|ref|YP_002828977.1|	-	2.2e-06	27.5	0.0	4.5e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|227827198|ref|YP_002828977.1|	-	4.7e-06	26.1	0.9	1e-05	25.0	0.2	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
DUF4423	PF14394.6	gi|227827198|ref|YP_002828977.1|	-	4.7e-06	26.4	0.1	8.9e-06	25.5	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_IclR	PF09339.10	gi|227827198|ref|YP_002828977.1|	-	5.3e-05	22.9	0.0	8.5e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|227827198|ref|YP_002828977.1|	-	0.00033	20.5	0.2	0.00061	19.7	0.2	1.4	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|227827198|ref|YP_002828977.1|	-	0.00037	20.3	0.1	0.00074	19.3	0.1	1.5	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_36	PF13730.6	gi|227827198|ref|YP_002828977.1|	-	0.00057	19.8	0.0	0.0013	18.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|227827198|ref|YP_002828977.1|	-	0.00062	20.2	0.2	0.0012	19.3	0.2	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Trp_repressor	PF01371.19	gi|227827198|ref|YP_002828977.1|	-	0.00077	19.6	0.2	0.0016	18.5	0.2	1.5	1	0	0	1	1	1	1	Trp	repressor	protein
DUF2250	PF10007.9	gi|227827198|ref|YP_002828977.1|	-	0.003	17.6	0.4	0.016	15.3	0.2	2.1	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Fe_dep_repress	PF01325.19	gi|227827198|ref|YP_002828977.1|	-	0.0056	16.9	0.2	0.011	15.9	0.2	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|227827198|ref|YP_002828977.1|	-	0.0056	16.4	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Rrf2	PF02082.20	gi|227827198|ref|YP_002828977.1|	-	0.006	16.9	0.1	0.011	16.0	0.1	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_28	PF13518.6	gi|227827198|ref|YP_002828977.1|	-	0.0067	16.5	0.0	0.012	15.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|227827198|ref|YP_002828977.1|	-	0.011	15.7	0.1	0.024	14.6	0.1	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MHC_I_2	PF14586.6	gi|227827198|ref|YP_002828977.1|	-	0.022	14.6	0.0	0.029	14.2	0.0	1.2	1	0	0	1	1	1	0	Class	I	Histocompatibility	antigen,	NKG2D	ligand,	domains	1	and	2
HTH_20	PF12840.7	gi|227827198|ref|YP_002828977.1|	-	0.027	14.5	0.0	0.058	13.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HHH_5	PF14520.6	gi|227827198|ref|YP_002828977.1|	-	0.031	14.9	0.1	0.26	11.9	0.0	2.1	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
HTH_12	PF08461.10	gi|227827198|ref|YP_002828977.1|	-	0.035	14.0	0.2	0.087	12.8	0.2	1.7	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Arg_repressor	PF01316.21	gi|227827198|ref|YP_002828977.1|	-	0.049	13.4	0.1	0.19	11.5	0.1	2.0	2	1	0	2	2	2	0	Arginine	repressor,	DNA	binding	domain
HTH_29	PF13551.6	gi|227827198|ref|YP_002828977.1|	-	0.085	12.9	0.1	0.15	12.1	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_17	PF12728.7	gi|227827198|ref|YP_002828977.1|	-	0.087	13.0	0.6	0.22	11.8	0.6	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|227827198|ref|YP_002828977.1|	-	0.11	13.0	0.0	0.19	12.2	0.0	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
Cas6_N	PF17952.1	gi|227827199|ref|YP_002828978.1|	-	2e-06	28.1	2.3	6.9e-05	23.1	0.8	2.6	2	1	0	2	2	2	1	Cas6	N-terminal	domain
CRISPR_Cas6	PF10040.9	gi|227827199|ref|YP_002828978.1|	-	4.7e-05	24.0	0.0	8.6e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	CRISPR-associated	endoribonuclease	Cas6
Cas_Cas6	PF01881.16	gi|227827199|ref|YP_002828978.1|	-	0.00094	19.8	2.4	0.0049	17.4	1.4	2.1	1	1	1	2	2	2	1	CRISPR	associated	protein	Cas6
Asp_protease_2	PF13650.6	gi|227827202|ref|YP_002828981.1|	-	0.042	14.5	0.0	0.09	13.4	0.0	1.7	2	0	0	2	2	2	0	Aspartyl	protease
gag-asp_proteas	PF13975.6	gi|227827202|ref|YP_002828981.1|	-	0.084	13.4	0.0	0.18	12.4	0.0	1.7	1	1	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
Cas_APE2256	PF09651.10	gi|227827203|ref|YP_002828982.1|	-	1.6e-30	105.8	0.1	3.1e-30	104.8	0.1	1.5	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_APE2256)
PilM	PF07419.12	gi|227827203|ref|YP_002828982.1|	-	0.17	12.0	0.0	0.31	11.2	0.0	1.3	1	0	0	1	1	1	0	PilM
ADP_ribosyl_GH	PF03747.14	gi|227827204|ref|YP_002828983.1|	-	7.5e-44	150.6	0.0	9.5e-44	150.3	0.0	1.1	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Rick_17kDa_Anti	PF05433.15	gi|227827204|ref|YP_002828983.1|	-	0.072	13.0	0.3	6.8	6.6	0.1	2.3	2	0	0	2	2	2	0	Glycine	zipper	2TM	domain
MDM31_MDM32	PF08118.11	gi|227827205|ref|YP_002828984.1|	-	0.0024	16.6	0.4	0.0079	14.9	0.1	1.7	1	1	1	2	2	2	1	Yeast	mitochondrial	distribution	and	morphology	(MDM)	proteins
DUF2400	PF09674.10	gi|227827205|ref|YP_002828984.1|	-	0.0082	16.2	1.4	0.39	10.7	0.0	2.3	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF2400)
GSH_synthase	PF03199.15	gi|227827205|ref|YP_002828984.1|	-	0.021	15.3	0.5	0.95	9.9	0.0	2.5	2	1	0	2	2	2	0	Eukaryotic	glutathione	synthase
DUF4264	PF14084.6	gi|227827205|ref|YP_002828984.1|	-	0.055	13.1	1.7	0.1	12.3	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4264)
DnaJ	PF00226.31	gi|227827205|ref|YP_002828984.1|	-	0.25	11.5	3.1	11	6.3	0.2	2.6	2	0	0	2	2	2	0	DnaJ	domain
RHH_1	PF01402.21	gi|227827206|ref|YP_002828985.1|	-	5.4e-08	32.5	0.1	1.1e-07	31.5	0.1	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.14	gi|227827206|ref|YP_002828985.1|	-	0.0012	18.6	0.3	0.0042	16.9	0.0	1.9	2	0	0	2	2	2	1	Arc-like	DNA	binding	domain
RHH_3	PF12651.7	gi|227827206|ref|YP_002828985.1|	-	0.0015	18.4	1.6	0.006	16.5	0.2	2.2	2	0	0	2	2	2	1	Ribbon-helix-helix	domain
Helicase_PWI	PF18149.1	gi|227827206|ref|YP_002828985.1|	-	0.017	15.3	0.1	0.026	14.7	0.1	1.3	1	0	0	1	1	1	0	N-terminal	helicase	PWI	domain
RHH_4	PF13467.6	gi|227827206|ref|YP_002828985.1|	-	0.035	14.0	0.1	0.2	11.6	0.0	2.0	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
CopG_antitoxin	PF12441.8	gi|227827206|ref|YP_002828985.1|	-	0.058	13.9	0.1	0.096	13.2	0.1	1.3	1	0	0	1	1	1	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
Mnd1	PF03962.15	gi|227827206|ref|YP_002828985.1|	-	0.077	13.3	0.2	0.19	12.1	0.2	1.6	1	0	0	1	1	1	0	Mnd1	HTH	domain
RuvA_C	PF07499.13	gi|227827206|ref|YP_002828985.1|	-	0.13	12.8	0.5	0.36	11.3	0.3	1.8	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
PIN	PF01850.21	gi|227827207|ref|YP_002828986.1|	-	5.1e-06	27.0	0.2	7.2e-06	26.5	0.2	1.3	1	0	0	1	1	1	1	PIN	domain
HTH_Mga	PF08280.11	gi|227827208|ref|YP_002828987.1|	-	0.00012	22.0	0.3	0.00032	20.7	0.3	1.7	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_11	PF08279.12	gi|227827208|ref|YP_002828987.1|	-	0.00028	20.8	0.5	0.00089	19.2	0.2	2.1	2	0	0	2	2	2	1	HTH	domain
Mga	PF05043.13	gi|227827208|ref|YP_002828987.1|	-	0.012	16.2	0.1	0.025	15.2	0.1	1.5	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
RuvB_C	PF05491.13	gi|227827208|ref|YP_002828987.1|	-	0.038	13.9	0.1	0.084	12.8	0.1	1.7	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
HTH_24	PF13412.6	gi|227827208|ref|YP_002828987.1|	-	0.05	13.2	0.2	0.29	10.7	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Cas_Cas4	PF01930.17	gi|227827209|ref|YP_002828988.1|	-	2.1e-15	57.2	0.0	2.4e-15	57.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|227827209|ref|YP_002828988.1|	-	4.4e-07	30.1	0.0	1e-06	28.8	0.0	1.5	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
CRISPR_Cas2	PF09827.9	gi|227827210|ref|YP_002828989.1|	-	3e-17	62.6	0.1	3.4e-17	62.4	0.1	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas1	PF01867.16	gi|227827211|ref|YP_002828990.1|	-	2.2e-50	171.4	0.6	3e-48	164.4	0.6	2.1	1	1	0	1	1	1	1	CRISPR	associated	protein	Cas1
Csa1	PF06023.12	gi|227827212|ref|YP_002828991.1|	-	2.9e-108	361.7	0.1	3.8e-108	361.3	0.1	1.2	1	0	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
Dna2	PF08696.11	gi|227827212|ref|YP_002828991.1|	-	0.16	11.7	0.0	0.22	11.3	0.0	1.2	1	0	0	1	1	1	0	DNA	replication	factor	Dna2
DUF1887	PF09002.11	gi|227827213|ref|YP_002828992.1|	-	2.2e-05	23.4	0.1	3.6e-05	22.6	0.1	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1887)
HTH_24	PF13412.6	gi|227827213|ref|YP_002828992.1|	-	0.00013	21.4	0.1	0.00023	20.6	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrbC_Ftype	PF09673.10	gi|227827213|ref|YP_002828992.1|	-	0.0098	15.9	0.0	0.021	14.9	0.0	1.5	1	0	0	1	1	1	1	Type-F	conjugative	transfer	system	pilin	assembly	protein
HTH_45	PF14947.6	gi|227827213|ref|YP_002828992.1|	-	0.027	14.5	2.0	0.027	14.5	0.7	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix
Cas_Cas02710	PF09670.10	gi|227827213|ref|YP_002828992.1|	-	0.027	13.3	0.1	0.036	12.9	0.1	1.2	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas02710)
DUF2250	PF10007.9	gi|227827213|ref|YP_002828992.1|	-	0.047	13.8	0.1	0.12	12.5	0.1	1.8	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Sacchrp_dh_NADP	PF03435.18	gi|227827213|ref|YP_002828992.1|	-	0.063	13.5	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
TFCD_C	PF12612.8	gi|227827213|ref|YP_002828992.1|	-	0.11	12.3	0.0	0.25	11.2	0.0	1.5	2	0	0	2	2	2	0	Tubulin	folding	cofactor	D	C	terminal
Cas_Csa5	PF09702.10	gi|227827214|ref|YP_002828993.1|	-	8.4e-52	173.9	0.3	1.2e-51	173.4	0.3	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Csa5)
Pox_C7_F8A	PF03287.14	gi|227827214|ref|YP_002828993.1|	-	0.046	13.7	0.5	0.078	13.0	0.5	1.4	1	1	0	1	1	1	0	Poxvirus	C7/F8A	protein
DevR	PF01905.16	gi|227827215|ref|YP_002828994.1|	-	1.2e-76	257.4	0.0	1.4e-76	257.1	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
Cas_Cas5d	PF09704.10	gi|227827216|ref|YP_002828995.1|	-	0.015	15.2	0.1	0.041	13.7	0.1	1.9	1	1	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas5)
DEAD	PF00270.29	gi|227827217|ref|YP_002828996.1|	-	5.5e-13	49.0	0.2	6.7e-11	42.3	0.0	2.6	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|227827217|ref|YP_002828996.1|	-	1.2e-09	38.5	0.2	4.6e-09	36.6	0.1	2.1	1	1	1	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|227827217|ref|YP_002828996.1|	-	4.1e-05	23.7	0.0	0.00016	21.7	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
RuvB_N	PF05496.12	gi|227827217|ref|YP_002828996.1|	-	0.0093	15.7	0.0	0.023	14.4	0.0	1.7	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
HAD	PF12710.7	gi|227827217|ref|YP_002828996.1|	-	0.022	15.2	0.0	0.041	14.3	0.0	1.4	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
AAA_25	PF13481.6	gi|227827217|ref|YP_002828996.1|	-	0.04	13.5	0.1	0.17	11.4	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DUF3908	PF13048.6	gi|227827217|ref|YP_002828996.1|	-	0.089	13.1	2.1	0.24	11.7	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3908)
HD_6	PF18019.1	gi|227827218|ref|YP_002828997.1|	-	0.0011	19.1	0.0	0.0014	18.8	0.0	1.2	1	0	0	1	1	1	1	HD	domain
Cas6_N	PF17952.1	gi|227827220|ref|YP_002828999.1|	-	1.5e-37	128.4	0.4	2.6e-37	127.6	0.4	1.4	1	0	0	1	1	1	1	Cas6	N-terminal	domain
CRISPR_Cas6	PF10040.9	gi|227827220|ref|YP_002828999.1|	-	1.8e-11	44.5	0.0	6.1e-11	42.8	0.0	1.9	2	0	0	2	2	2	1	CRISPR-associated	endoribonuclease	Cas6
Sirohm_synth_C	PF14823.6	gi|227827221|ref|YP_002829000.1|	-	0.081	12.6	7.3	14	5.4	0.0	4.0	3	1	0	3	3	3	0	Sirohaem	biosynthesis	protein	C-terminal
DUF4065	PF13274.6	gi|227827221|ref|YP_002829000.1|	-	0.85	10.5	7.2	22	6.0	0.2	3.4	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF4065)
DUF1002	PF06207.11	gi|227827221|ref|YP_002829000.1|	-	1.5	8.3	5.8	0.45	10.0	1.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1002)
PIN	PF01850.21	gi|227827222|ref|YP_002829001.1|	-	2.5e-19	70.0	0.1	2.8e-19	69.8	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|227827223|ref|YP_002829002.1|	-	4e-14	52.1	1.3	6.1e-14	51.6	1.3	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
AbrB-like	PF14250.6	gi|227827223|ref|YP_002829002.1|	-	0.015	15.4	0.2	0.054	13.6	0.1	1.8	2	0	0	2	2	2	0	AbrB-like	transcriptional	regulator
CDC48_N	PF02359.18	gi|227827223|ref|YP_002829002.1|	-	0.042	14.0	0.1	0.051	13.7	0.1	1.3	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Thump_like	PF18096.1	gi|227827223|ref|YP_002829002.1|	-	0.051	13.5	0.2	0.077	12.9	0.2	1.4	1	0	0	1	1	1	0	THUMP	domain-like
PrlF_antitoxin	PF15937.5	gi|227827223|ref|YP_002829002.1|	-	0.057	13.9	0.1	0.072	13.5	0.1	1.2	1	1	0	1	1	1	0	prlF	antitoxin	for	toxin	YhaV_toxin
AAA_14	PF13173.6	gi|227827224|ref|YP_002829003.1|	-	2.5e-31	108.4	0.1	5.7e-31	107.3	0.1	1.6	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.6	gi|227827224|ref|YP_002829003.1|	-	9.1e-10	38.7	0.2	1.8e-09	37.8	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
AAA_24	PF13479.6	gi|227827224|ref|YP_002829003.1|	-	0.07	12.8	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
LigB	PF02900.18	gi|227827225|ref|YP_002829004.1|	-	7.2e-13	48.2	0.0	8.8e-13	47.9	0.0	1.1	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
SNN_transmemb	PF09049.10	gi|227827226|ref|YP_002829005.1|	-	0.21	11.6	0.3	0.21	11.6	0.3	2.0	2	0	0	2	2	2	0	Stannin	transmembrane
DUF4083	PF13314.6	gi|227827226|ref|YP_002829005.1|	-	6.3	6.8	9.1	0.92	9.5	1.5	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4083)
Band_7	PF01145.25	gi|227827227|ref|YP_002829006.1|	-	3.4e-22	79.3	1.0	4.6e-22	78.9	1.0	1.3	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|227827227|ref|YP_002829006.1|	-	2.9e-12	46.8	0.1	7.8e-12	45.4	0.1	1.7	1	1	0	1	1	1	1	SPFH	domain-Band	7	family
MFS_1	PF07690.16	gi|227827229|ref|YP_002829008.1|	-	3.6e-29	101.8	43.0	3.6e-29	101.8	43.0	1.4	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Glycos_transf_2	PF00535.26	gi|227827232|ref|YP_002829011.1|	-	1.2e-18	67.5	0.0	2e-18	66.8	0.0	1.3	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227827232|ref|YP_002829011.1|	-	1.7e-07	31.4	0.0	2.6e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|227827232|ref|YP_002829011.1|	-	0.012	15.1	0.0	0.02	14.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF3377	PF11857.8	gi|227827232|ref|YP_002829011.1|	-	0.045	13.7	0.0	0.14	12.1	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3377)
HEAT	PF02985.22	gi|227827234|ref|YP_002829013.1|	-	0.0068	16.6	0.1	5.3	7.6	0.0	3.6	3	0	0	3	3	3	1	HEAT	repeat
HEAT_2	PF13646.6	gi|227827234|ref|YP_002829013.1|	-	0.033	14.6	0.0	2.6	8.5	0.0	3.0	2	1	1	3	3	3	0	HEAT	repeats
SMP_LBD	PF17047.5	gi|227827234|ref|YP_002829013.1|	-	0.049	13.1	0.4	0.94	8.9	0.2	2.2	1	1	1	2	2	2	0	Synaptotagmin-like	mitochondrial-lipid-binding	domain
Mitovir_RNA_pol	PF05919.11	gi|227827234|ref|YP_002829013.1|	-	0.052	12.7	0.1	0.061	12.5	0.1	1.0	1	0	0	1	1	1	0	Mitovirus	RNA-dependent	RNA	polymerase
Peptidase_M20	PF01546.28	gi|227827235|ref|YP_002829014.1|	-	3.9e-33	114.9	0.1	5.2e-33	114.5	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|227827235|ref|YP_002829014.1|	-	1.1e-13	51.1	0.0	6.7e-13	48.5	0.0	2.1	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|227827235|ref|YP_002829014.1|	-	0.15	11.7	0.1	0.25	11.0	0.1	1.3	1	0	0	1	1	1	0	Peptidase	family	M28
MOR2-PAG1_C	PF14225.6	gi|227827235|ref|YP_002829014.1|	-	0.2	11.5	0.0	0.33	10.8	0.0	1.3	1	0	0	1	1	1	0	Cell	morphogenesis	C-terminal
Phytochelatin_C	PF09328.10	gi|227827235|ref|YP_002829014.1|	-	1.4	8.2	2.9	0.56	9.5	0.4	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1984)
Glyco_hydro_12	PF01670.16	gi|227827236|ref|YP_002829015.1|	-	1.1e-21	77.8	9.0	1.6e-21	77.3	9.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	12
Insulin_TMD	PF17870.1	gi|227827236|ref|YP_002829015.1|	-	0.23	11.5	7.4	0.57	10.3	7.4	1.6	1	0	0	1	1	1	0	Insulin	receptor	trans-membrane	segment
DUF608	PF04685.13	gi|227827237|ref|YP_002829016.1|	-	2.3e-72	244.1	0.1	6.3e-71	239.4	0.1	2.2	1	1	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydr_116N	PF12215.8	gi|227827237|ref|YP_002829016.1|	-	5.7e-20	72.0	0.0	9.3e-20	71.3	0.0	1.4	1	0	0	1	1	1	1	beta-glucosidase	2,	glycosyl-hydrolase	family	116	N-term
Bac_rhamnosid6H	PF17389.2	gi|227827237|ref|YP_002829016.1|	-	1.8e-06	27.4	0.0	0.0025	17.1	0.0	2.2	1	1	1	2	2	2	2	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
DUF4435	PF14491.6	gi|227827237|ref|YP_002829016.1|	-	0.032	14.1	0.5	0.08	12.8	0.5	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4435)
GDE_C	PF06202.14	gi|227827237|ref|YP_002829016.1|	-	0.095	11.6	0.3	0.62	8.9	0.3	2.3	1	1	0	1	1	1	0	Amylo-alpha-1,6-glucosidase
DUF5127	PF17168.4	gi|227827237|ref|YP_002829016.1|	-	0.1	12.4	0.1	0.55	10.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5127)
DUF4322	PF14210.6	gi|227827238|ref|YP_002829017.1|	-	8.4e-27	92.8	0.6	1.7e-26	91.9	0.1	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|227827238|ref|YP_002829017.1|	-	1.4e-08	34.6	0.1	3.1e-08	33.5	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
HTH_23	PF13384.6	gi|227827238|ref|YP_002829017.1|	-	0.054	13.3	0.0	0.2	11.5	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.6	gi|227827238|ref|YP_002829017.1|	-	0.069	12.6	0.0	0.2	11.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DDE_5	PF13546.6	gi|227827238|ref|YP_002829017.1|	-	0.19	11.0	0.0	2.2	7.5	0.0	2.0	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
Transgly	PF00912.22	gi|227827238|ref|YP_002829017.1|	-	0.76	9.2	3.0	11	5.5	0.2	2.4	2	1	0	2	2	2	0	Transglycosylase
AAA_15	PF13175.6	gi|227827239|ref|YP_002829018.1|	-	2.8e-15	56.9	1.0	3e-15	56.8	1.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|227827239|ref|YP_002829018.1|	-	1.7e-13	50.5	0.1	1.7e-13	50.5	0.1	1.1	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|227827239|ref|YP_002829018.1|	-	1.2e-12	48.3	0.1	1.4e-12	48.1	0.1	1.1	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|227827239|ref|YP_002829018.1|	-	3.6e-12	47.2	0.2	4.4e-12	46.9	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227827239|ref|YP_002829018.1|	-	8.8e-07	28.6	0.0	2.1e-06	27.4	0.0	1.6	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|227827239|ref|YP_002829018.1|	-	0.00054	19.6	0.0	0.00072	19.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|227827239|ref|YP_002829018.1|	-	0.00066	18.5	0.0	0.00071	18.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|227827239|ref|YP_002829018.1|	-	0.0076	16.8	0.0	0.012	16.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_16	PF13191.6	gi|227827239|ref|YP_002829018.1|	-	0.15	12.5	0.0	0.15	12.4	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
PaREP1	PF05942.11	gi|227827240|ref|YP_002829019.1|	-	2.4e-38	130.6	1.5	2.4e-38	130.6	1.5	1.6	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
DUF357	PF04010.13	gi|227827240|ref|YP_002829019.1|	-	0.00025	21.0	0.1	0.011	15.8	0.0	2.6	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF357)
FliS	PF02561.14	gi|227827240|ref|YP_002829019.1|	-	0.021	15.1	0.2	0.13	12.5	0.1	1.9	2	0	0	2	2	2	0	Flagellar	protein	FliS
ParB	PF08775.10	gi|227827240|ref|YP_002829019.1|	-	0.099	13.1	1.4	0.11	13.0	0.2	1.7	2	0	0	2	2	2	0	ParB	family
ATPase_2	PF01637.18	gi|227827241|ref|YP_002829020.1|	-	3.5e-24	86.0	8.2	1.2e-22	81.0	5.5	2.9	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|227827241|ref|YP_002829020.1|	-	4e-10	39.8	1.6	9.2e-10	38.7	1.6	1.6	1	0	0	1	1	1	1	AAA	domain
DUF234	PF03008.14	gi|227827241|ref|YP_002829020.1|	-	1e-08	35.5	2.8	1e-08	35.5	2.8	2.3	2	0	0	2	2	2	1	Archaea	bacterial	proteins	of	unknown	function
AAA_22	PF13401.6	gi|227827241|ref|YP_002829020.1|	-	6.5e-05	23.2	0.0	0.00029	21.1	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|227827241|ref|YP_002829020.1|	-	0.0046	17.4	0.0	0.0077	16.6	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227827241|ref|YP_002829020.1|	-	0.024	15.1	0.0	0.051	14.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|227827241|ref|YP_002829020.1|	-	0.057	12.6	0.0	0.091	11.9	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
DUF1471	PF07338.13	gi|227827242|ref|YP_002829021.1|	-	0.012	15.5	0.2	0.036	14.0	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1471)
NolX	PF05819.11	gi|227827242|ref|YP_002829021.1|	-	0.025	13.9	0.4	0.026	13.9	0.4	1.0	1	0	0	1	1	1	0	NolX	protein
PIN	PF01850.21	gi|227827246|ref|YP_002829025.1|	-	5.1e-20	72.2	1.5	5.7e-20	72.0	1.5	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_5	PF08745.11	gi|227827246|ref|YP_002829025.1|	-	0.00012	21.6	0.6	0.0013	18.2	0.0	2.3	2	1	0	2	2	2	1	PINc	domain	ribonuclease
PIN_9	PF18477.1	gi|227827246|ref|YP_002829025.1|	-	0.00043	20.6	3.2	0.022	15.1	3.2	2.5	1	1	0	1	1	1	1	PIN	like	domain
PIN_12	PF16289.5	gi|227827246|ref|YP_002829025.1|	-	0.0013	19.3	3.4	0.0021	18.6	3.4	1.5	1	1	0	1	1	1	1	PIN	domain
PIN_8	PF18476.1	gi|227827246|ref|YP_002829025.1|	-	0.0055	16.6	0.2	0.0067	16.3	0.2	1.1	1	0	0	1	1	1	1	PIN	like	domain
PIN_4	PF13638.6	gi|227827246|ref|YP_002829025.1|	-	0.15	12.4	2.8	0.49	10.7	2.8	1.9	1	1	0	1	1	1	0	PIN	domain
MazE_antitoxin	PF04014.18	gi|227827247|ref|YP_002829026.1|	-	3e-13	49.4	0.1	4.8e-13	48.7	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|227827247|ref|YP_002829026.1|	-	6.3e-05	23.3	0.1	0.00017	21.9	0.0	1.6	1	1	1	2	2	2	1	prlF	antitoxin	for	toxin	YhaV_toxin
eIF-1a	PF01176.19	gi|227827247|ref|YP_002829026.1|	-	0.00079	19.2	0.1	0.0012	18.6	0.1	1.3	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
CDC48_N	PF02359.18	gi|227827247|ref|YP_002829026.1|	-	0.0014	18.7	0.1	0.025	14.7	0.1	2.1	1	1	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
DUF1905	PF08922.11	gi|227827247|ref|YP_002829026.1|	-	0.012	15.7	0.1	0.066	13.3	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1905)
Thump_like	PF18096.1	gi|227827247|ref|YP_002829026.1|	-	0.041	13.8	0.0	0.074	13.0	0.0	1.4	1	0	0	1	1	1	0	THUMP	domain-like
Big_8	PF17961.1	gi|227827247|ref|YP_002829026.1|	-	0.051	13.7	0.0	0.098	12.8	0.0	1.6	1	1	0	1	1	1	0	Bacterial	Ig	domain
AbrB-like	PF14250.6	gi|227827247|ref|YP_002829026.1|	-	0.071	13.2	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
AAA_14	PF13173.6	gi|227827248|ref|YP_002829027.1|	-	2.8e-08	33.9	0.0	5.1e-08	33.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
TrkA_N	PF02254.18	gi|227827248|ref|YP_002829027.1|	-	0.0046	17.2	0.0	0.015	15.6	0.0	1.7	2	0	0	2	2	2	1	TrkA-N	domain
AAA_24	PF13479.6	gi|227827248|ref|YP_002829027.1|	-	0.027	14.2	0.0	0.032	13.9	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
Ccdc124	PF06244.12	gi|227827248|ref|YP_002829027.1|	-	0.12	12.9	0.2	0.15	12.6	0.2	1.1	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	124	/Oxs1
UDPG_MGDP_dh_N	PF03721.14	gi|227827248|ref|YP_002829027.1|	-	0.18	11.4	0.0	0.24	11.0	0.0	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DUF5388	PF17363.2	gi|227827249|ref|YP_002829028.1|	-	0.015	15.5	0.3	0.026	14.7	0.2	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5388)
WIYLD	PF10440.9	gi|227827249|ref|YP_002829028.1|	-	0.047	13.5	0.5	0.11	12.3	0.2	1.7	1	1	1	2	2	2	0	Ubiquitin-binding	WIYLD	domain
Cation_ATPase_N	PF00690.26	gi|227827249|ref|YP_002829028.1|	-	0.1	12.3	0.2	0.16	11.7	0.1	1.6	1	1	1	2	2	2	0	Cation	transporter/ATPase,	N-terminus
PIN	PF01850.21	gi|227827250|ref|YP_002829029.1|	-	2.5e-18	66.7	3.1	3e-18	66.5	3.1	1.1	1	0	0	1	1	1	1	PIN	domain
DUF4781	PF16013.5	gi|227827250|ref|YP_002829029.1|	-	0.026	13.3	0.2	0.033	13.0	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
Hemagglutinin	PF00509.18	gi|227827250|ref|YP_002829029.1|	-	0.45	8.9	2.9	0.51	8.7	2.9	1.1	1	0	0	1	1	1	0	Haemagglutinin
CorA	PF01544.18	gi|227827251|ref|YP_002829030.1|	-	1.4e-10	41.0	7.6	3.1e-10	39.9	7.6	1.5	1	1	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
SDF	PF00375.18	gi|227827251|ref|YP_002829030.1|	-	0.022	13.8	1.6	0.03	13.4	1.6	1.1	1	0	0	1	1	1	0	Sodium:dicarboxylate	symporter	family
DUF3923	PF13061.6	gi|227827251|ref|YP_002829030.1|	-	0.11	12.5	4.0	0.28	11.3	4.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3923)
dTDP_sugar_isom	PF00908.17	gi|227827252|ref|YP_002829031.1|	-	9.6e-58	194.6	0.0	1.2e-57	194.3	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
Peptidase_M17	PF00883.21	gi|227827252|ref|YP_002829031.1|	-	0.12	11.7	0.0	0.16	11.2	0.0	1.1	1	0	0	1	1	1	0	Cytosol	aminopeptidase	family,	catalytic	domain
RHH_1	PF01402.21	gi|227827253|ref|YP_002829032.1|	-	0.013	15.4	0.3	0.013	15.4	0.3	1.6	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
RNA_pol_Rpb2_4	PF04566.13	gi|227827253|ref|YP_002829032.1|	-	0.047	14.0	0.0	0.13	12.6	0.0	1.7	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
RVP	PF00077.20	gi|227827254|ref|YP_002829033.1|	-	0.0012	19.2	0.0	0.0019	18.5	0.0	1.4	1	1	0	1	1	1	1	Retroviral	aspartyl	protease
Asp_protease_2	PF13650.6	gi|227827254|ref|YP_002829033.1|	-	0.13	12.9	0.0	0.17	12.6	0.0	1.3	1	0	0	1	1	1	0	Aspartyl	protease
ELFV_dehydrog	PF00208.21	gi|227827255|ref|YP_002829034.1|	-	2.8e-67	227.0	3.7	4.9e-67	226.2	3.7	1.4	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|227827255|ref|YP_002829034.1|	-	3.8e-50	169.1	0.0	1e-49	167.7	0.0	1.7	2	0	0	2	2	2	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|227827255|ref|YP_002829034.1|	-	0.00055	19.4	0.4	0.00094	18.6	0.4	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.21	gi|227827255|ref|YP_002829034.1|	-	0.071	12.5	0.8	0.13	11.6	0.8	1.4	1	0	0	1	1	1	0	ThiF	family
AdoHcyase_NAD	PF00670.21	gi|227827255|ref|YP_002829034.1|	-	0.072	13.1	1.4	0.16	12.0	0.8	1.7	1	1	1	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
HTH_27	PF13463.6	gi|227827257|ref|YP_002829036.1|	-	7.3e-05	23.2	0.0	0.00016	22.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|227827257|ref|YP_002829036.1|	-	0.0002	21.4	0.7	0.0011	19.1	0.3	2.3	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
DUF4423	PF14394.6	gi|227827257|ref|YP_002829036.1|	-	0.001	18.8	0.1	0.0035	17.1	0.0	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4423)
MarR_2	PF12802.7	gi|227827257|ref|YP_002829036.1|	-	0.002	18.0	0.0	0.0034	17.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
SMC_Nse1	PF07574.13	gi|227827257|ref|YP_002829036.1|	-	0.01	15.7	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	0	Nse1	non-SMC	component	of	SMC5-6	complex
HTH_24	PF13412.6	gi|227827257|ref|YP_002829036.1|	-	0.015	14.8	0.0	0.028	14.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|227827257|ref|YP_002829036.1|	-	0.016	15.2	0.5	0.068	13.1	0.0	2.3	2	1	1	3	3	3	0	Helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|227827257|ref|YP_002829036.1|	-	0.024	14.8	0.0	0.052	13.7	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_Crp_2	PF13545.6	gi|227827257|ref|YP_002829036.1|	-	0.026	14.5	0.0	0.066	13.2	0.0	1.7	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Mrr_N	PF14338.6	gi|227827257|ref|YP_002829036.1|	-	0.038	14.1	0.1	0.1	12.8	0.0	1.8	1	1	0	1	1	1	0	Mrr	N-terminal	domain
SWIB	PF02201.18	gi|227827257|ref|YP_002829036.1|	-	0.054	13.4	0.1	0.11	12.5	0.1	1.6	1	0	0	1	1	1	0	SWIB/MDM2	domain
HTH_5	PF01022.20	gi|227827257|ref|YP_002829036.1|	-	0.066	13.1	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PCI	PF01399.27	gi|227827257|ref|YP_002829036.1|	-	0.066	13.7	0.0	9.3	6.8	0.0	2.1	1	1	1	2	2	2	0	PCI	domain
RPA_C	PF08784.11	gi|227827257|ref|YP_002829036.1|	-	0.16	12.7	0.0	9	7.0	0.0	2.2	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
IlvN	PF07991.12	gi|227827258|ref|YP_002829037.1|	-	9.6e-61	204.2	0.7	1.3e-60	203.7	0.7	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|227827258|ref|YP_002829037.1|	-	4.9e-30	104.7	0.5	8e-30	104.0	0.1	1.5	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
2-Hacid_dh_C	PF02826.19	gi|227827258|ref|YP_002829037.1|	-	6.8e-07	28.8	0.1	1.3e-06	27.9	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|227827258|ref|YP_002829037.1|	-	1e-06	28.9	0.1	1.7e-06	28.2	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|227827258|ref|YP_002829037.1|	-	6.9e-06	26.6	0.1	1.4e-05	25.6	0.1	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|227827258|ref|YP_002829037.1|	-	0.00013	22.1	0.1	0.00024	21.3	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|227827258|ref|YP_002829037.1|	-	0.0038	17.2	0.0	3.9	7.4	0.1	2.6	2	1	1	3	3	3	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CoA_binding	PF02629.19	gi|227827258|ref|YP_002829037.1|	-	0.011	16.4	0.2	0.033	14.8	0.2	1.8	1	0	0	1	1	1	0	CoA	binding	domain
PglD_N	PF17836.1	gi|227827258|ref|YP_002829037.1|	-	0.12	13.1	1.9	0.4	11.4	0.4	2.6	3	0	0	3	3	3	0	PglD	N-terminal	domain
Shikimate_DH	PF01488.20	gi|227827258|ref|YP_002829037.1|	-	0.15	12.2	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
PDH	PF02153.17	gi|227827258|ref|YP_002829037.1|	-	0.17	10.8	0.0	0.28	10.1	0.0	1.5	2	0	0	2	2	2	0	Prephenate	dehydrogenase
ThiC_Rad_SAM	PF01964.18	gi|227827259|ref|YP_002829038.1|	-	2.3e-162	540.6	0.0	2.7e-162	540.3	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
ABC2_membrane_2	PF12679.7	gi|227827260|ref|YP_002829039.1|	-	1e-13	51.2	29.2	4.5e-13	49.1	29.2	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|227827260|ref|YP_002829039.1|	-	0.0001	21.5	30.0	0.0001	21.5	30.0	1.8	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|227827260|ref|YP_002829039.1|	-	0.0042	17.1	19.7	0.0042	17.1	19.7	2.3	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
SGTA_dimer	PF16546.5	gi|227827260|ref|YP_002829039.1|	-	0.23	11.3	0.9	57	3.6	0.0	3.2	3	0	0	3	3	3	0	Homodimerisation	domain	of	SGTA
ABC_tran	PF00005.27	gi|227827261|ref|YP_002829040.1|	-	3.2e-29	102.2	0.0	1.1e-28	100.5	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|227827261|ref|YP_002829040.1|	-	5.5e-11	42.8	0.4	0.00012	22.1	0.2	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|227827261|ref|YP_002829040.1|	-	9.3e-05	22.1	0.0	0.00017	21.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|227827261|ref|YP_002829040.1|	-	0.00013	21.8	0.1	0.00025	20.9	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227827261|ref|YP_002829040.1|	-	0.0024	18.3	0.8	0.021	15.2	0.7	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4162	PF13732.6	gi|227827261|ref|YP_002829040.1|	-	0.0029	18.3	0.8	0.0086	16.8	0.3	2.1	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_16	PF13191.6	gi|227827261|ref|YP_002829040.1|	-	0.0034	17.8	0.0	0.0059	17.0	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|227827261|ref|YP_002829040.1|	-	0.0035	17.9	2.3	0.0096	16.4	2.3	1.9	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|227827261|ref|YP_002829040.1|	-	0.0067	16.3	0.3	0.02	14.8	0.0	1.9	3	0	0	3	3	2	1	RsgA	GTPase
AAA_22	PF13401.6	gi|227827261|ref|YP_002829040.1|	-	0.0099	16.2	0.0	0.073	13.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
TsaE	PF02367.17	gi|227827261|ref|YP_002829040.1|	-	0.013	15.5	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_30	PF13604.6	gi|227827261|ref|YP_002829040.1|	-	0.018	14.8	0.0	0.032	13.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|227827261|ref|YP_002829040.1|	-	0.021	14.3	0.2	0.2	11.0	0.1	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
NTPase_1	PF03266.15	gi|227827261|ref|YP_002829040.1|	-	0.028	14.3	2.1	3.4	7.6	0.1	2.9	3	0	0	3	3	3	0	NTPase
Rad17	PF03215.15	gi|227827261|ref|YP_002829040.1|	-	0.038	13.9	0.0	0.11	12.5	0.0	1.7	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_11	PF13086.6	gi|227827261|ref|YP_002829040.1|	-	0.056	13.2	0.0	0.16	11.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|227827261|ref|YP_002829040.1|	-	0.059	13.3	0.0	0.46	10.4	0.0	2.3	3	0	0	3	3	3	0	NACHT	domain
AAA_5	PF07728.14	gi|227827261|ref|YP_002829040.1|	-	0.06	13.3	0.1	0.34	10.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
SRP54	PF00448.22	gi|227827261|ref|YP_002829040.1|	-	0.065	12.8	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
cobW	PF02492.19	gi|227827261|ref|YP_002829040.1|	-	0.084	12.5	0.0	0.19	11.3	0.0	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|227827261|ref|YP_002829040.1|	-	0.091	12.9	0.0	0.13	12.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|227827261|ref|YP_002829040.1|	-	0.12	11.8	0.0	0.22	11.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_27	PF13514.6	gi|227827261|ref|YP_002829040.1|	-	0.15	11.7	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF3887	PF13026.6	gi|227827262|ref|YP_002829041.1|	-	0.019	15.8	0.2	0.042	14.7	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3887)
DUF1286	PF06939.11	gi|227827263|ref|YP_002829042.1|	-	3.2e-47	159.4	8.8	3.2e-47	159.4	8.8	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1286)
YdjM	PF04307.14	gi|227827263|ref|YP_002829042.1|	-	0.024	13.9	5.3	0.053	12.8	5.3	1.7	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
Phage_holin_5_2	PF16079.5	gi|227827263|ref|YP_002829042.1|	-	0.11	12.8	2.0	3.1	8.2	0.0	3.2	3	2	0	3	3	3	0	Phage	holin	family	Hol44,	in	holin	superfamily	V
TRIQK	PF15168.6	gi|227827263|ref|YP_002829042.1|	-	0.18	11.7	3.9	6.3	6.8	0.2	2.5	2	0	0	2	2	2	0	Triple	QxxK/R	motif-containing	protein	family
ParE_toxin	PF05016.15	gi|227827264|ref|YP_002829043.1|	-	0.00057	20.4	0.0	0.00066	20.2	0.0	1.0	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
IBP39	PF11422.8	gi|227827264|ref|YP_002829043.1|	-	0.058	13.2	0.0	0.058	13.2	0.0	1.0	1	0	0	1	1	1	0	Initiator	binding	protein	39	kDa
DUF1028	PF06267.12	gi|227827266|ref|YP_002829045.1|	-	5.1e-72	241.7	0.0	6.7e-72	241.3	0.0	1.2	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
PG_binding_2	PF08823.11	gi|227827266|ref|YP_002829045.1|	-	1.5e-12	47.6	1.6	1.9e-12	47.3	0.4	1.9	2	0	0	2	2	2	1	Putative	peptidoglycan	binding	domain
VEFS-Box	PF09733.9	gi|227827266|ref|YP_002829045.1|	-	0.2	11.5	0.4	0.3	10.9	0.4	1.2	1	0	0	1	1	1	0	VEFS-Box	of	polycomb	protein
Y1_Tnp	PF01797.16	gi|227827268|ref|YP_002829047.1|	-	2.8e-38	130.7	2.7	3.1e-38	130.6	2.7	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
DUF836	PF05768.14	gi|227827268|ref|YP_002829047.1|	-	0.062	13.7	0.1	0.099	13.1	0.1	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
OrfB_IS605	PF01385.19	gi|227827269|ref|YP_002829048.1|	-	5.6e-27	94.4	0.9	5.6e-27	94.4	0.9	2.2	3	1	1	4	4	4	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|227827269|ref|YP_002829048.1|	-	6.4e-26	90.1	0.2	1.7e-25	88.8	0.2	1.8	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|227827269|ref|YP_002829048.1|	-	1e-08	34.5	0.1	1e-08	34.5	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
TF_Zn_Ribbon	PF08271.12	gi|227827269|ref|YP_002829048.1|	-	0.0041	16.6	1.9	0.65	9.6	0.1	2.9	3	0	0	3	3	3	2	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|227827269|ref|YP_002829048.1|	-	0.013	14.9	1.6	1	8.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227827269|ref|YP_002829048.1|	-	0.027	14.2	2.0	5.4	6.9	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
GP46	PF07409.12	gi|227827269|ref|YP_002829048.1|	-	0.067	13.0	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	Phage	protein	GP46
CIDE-N	PF02017.15	gi|227827269|ref|YP_002829048.1|	-	0.08	13.0	0.2	2.4	8.2	0.0	2.7	2	0	0	2	2	2	0	CIDE-N	domain
zf_C2H2_10	PF18414.1	gi|227827269|ref|YP_002829048.1|	-	0.35	10.4	1.0	8.6	6.0	0.1	2.3	2	0	0	2	2	2	0	C2H2	type	zinc-finger
HypA	PF01155.19	gi|227827269|ref|YP_002829048.1|	-	0.55	10.3	2.0	0.55	10.3	0.4	1.9	2	1	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
MtrG	PF04210.13	gi|227827269|ref|YP_002829048.1|	-	2.5	8.0	6.3	1.4	8.8	0.0	3.2	4	0	0	4	4	4	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
zf-ACC	PF17848.1	gi|227827269|ref|YP_002829048.1|	-	4.3	7.5	6.2	3	8.0	3.5	2.3	2	1	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
PRiA4_ORF3	PF07929.11	gi|227827270|ref|YP_002829049.1|	-	1.1e-10	41.5	0.0	1.3e-10	41.2	0.0	1.2	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
Tenui_NS3	PF05310.12	gi|227827270|ref|YP_002829049.1|	-	0.1	12.7	1.0	0.54	10.4	0.1	2.1	2	0	0	2	2	2	0	Tenuivirus	movement	protein
UPF0167	PF03691.14	gi|227827270|ref|YP_002829049.1|	-	1.6	8.5	14.2	0.05	13.4	2.7	2.8	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0167)
HNH_5	PF14279.6	gi|227827270|ref|YP_002829049.1|	-	3.9	7.4	8.7	9.8	6.1	0.3	2.6	2	1	0	2	2	2	0	HNH	endonuclease
SMI1_KNR4	PF09346.10	gi|227827272|ref|YP_002829051.1|	-	0.15	12.5	0.0	0.16	12.4	0.0	1.2	1	0	0	1	1	1	0	SMI1	/	KNR4	family	(SUKH-1)
DUF4322	PF14210.6	gi|227827273|ref|YP_002829052.1|	-	5.7e-27	93.4	0.1	1.9e-26	91.8	0.1	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|227827273|ref|YP_002829052.1|	-	1.4e-09	38.0	0.3	2.9e-09	36.9	0.3	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
HTH_23	PF13384.6	gi|227827273|ref|YP_002829052.1|	-	0.057	13.2	0.0	0.22	11.4	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.6	gi|227827273|ref|YP_002829052.1|	-	0.075	12.5	0.0	0.21	11.0	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Transgly	PF00912.22	gi|227827273|ref|YP_002829052.1|	-	0.86	9.0	3.8	12	5.3	0.2	2.4	2	1	0	2	2	2	0	Transglycosylase
YkyA	PF10368.9	gi|227827274|ref|YP_002829053.1|	-	0.053	13.2	0.1	0.27	10.9	0.0	1.9	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
PIN	PF01850.21	gi|227827275|ref|YP_002829054.1|	-	6e-09	36.5	0.0	8.4e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|227827275|ref|YP_002829054.1|	-	0.061	13.8	1.5	7.7	7.0	0.3	2.3	1	1	1	2	2	2	0	PIN	domain
Glycos_transf_2	PF00535.26	gi|227827276|ref|YP_002829055.1|	-	2.2e-07	30.9	0.0	3.5e-07	30.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
ABC_membrane_3	PF13748.6	gi|227827277|ref|YP_002829056.1|	-	0.028	13.7	2.0	0.027	13.7	2.0	1.0	1	0	0	1	1	1	0	ABC	transporter	transmembrane	region
GDP_Man_Dehyd	PF16363.5	gi|227827278|ref|YP_002829057.1|	-	2e-66	224.7	0.0	2.7e-66	224.2	0.0	1.0	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|227827278|ref|YP_002829057.1|	-	3.1e-63	213.4	0.0	3.8e-63	213.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|227827278|ref|YP_002829057.1|	-	1e-18	67.4	0.0	1.4e-18	67.0	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|227827278|ref|YP_002829057.1|	-	1.1e-17	64.0	0.0	1.3e-17	63.7	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|227827278|ref|YP_002829057.1|	-	2e-14	53.4	0.0	4.3e-14	52.4	0.0	1.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|227827278|ref|YP_002829057.1|	-	9.3e-11	41.4	2.1	3.8e-09	36.1	0.3	2.9	1	1	1	2	2	2	1	Male	sterility	protein
NmrA	PF05368.13	gi|227827278|ref|YP_002829057.1|	-	1.4e-05	24.8	0.0	0.085	12.4	0.0	2.2	2	0	0	2	2	2	2	NmrA-like	family
NAD_binding_10	PF13460.6	gi|227827278|ref|YP_002829057.1|	-	5.9e-05	23.0	0.0	9.6e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
adh_short	PF00106.25	gi|227827278|ref|YP_002829057.1|	-	0.00014	21.4	0.1	0.076	12.5	0.0	2.3	2	0	0	2	2	2	2	short	chain	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|227827278|ref|YP_002829057.1|	-	0.015	15.5	0.1	0.036	14.3	0.1	1.7	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_3	PF03447.16	gi|227827278|ref|YP_002829057.1|	-	0.036	14.7	0.0	0.079	13.6	0.0	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
Ldh_1_N	PF00056.23	gi|227827278|ref|YP_002829057.1|	-	0.039	14.0	0.0	0.063	13.4	0.0	1.3	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|227827278|ref|YP_002829057.1|	-	0.075	13.3	0.1	0.17	12.1	0.1	1.7	1	0	0	1	1	1	0	TrkA-N	domain
LpxI_N	PF17930.1	gi|227827278|ref|YP_002829057.1|	-	0.11	12.3	0.1	0.2	11.5	0.1	1.4	1	0	0	1	1	1	0	LpxI	N-terminal	domain
HetR_C	PF18460.1	gi|227827278|ref|YP_002829057.1|	-	0.12	12.3	0.3	0.32	11.0	0.0	1.8	2	0	0	2	2	2	0	Heterocyst	differentiation	regulator	C-terminal	Hood	domain
NTP_transferase	PF00483.23	gi|227827279|ref|YP_002829058.1|	-	2e-52	178.3	0.0	2.4e-52	178.0	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|227827279|ref|YP_002829058.1|	-	3e-10	40.7	0.0	3.9e-10	40.3	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|227827279|ref|YP_002829058.1|	-	1.7e-06	27.5	5.6	8.4e-05	22.1	0.8	4.4	3	1	1	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
Fucokinase	PF07959.12	gi|227827279|ref|YP_002829058.1|	-	9.3e-05	21.5	0.0	0.00014	20.9	0.0	1.2	1	0	0	1	1	1	1	L-fucokinase
Hexapep_2	PF14602.6	gi|227827279|ref|YP_002829058.1|	-	0.0046	16.7	0.2	0.0046	16.7	0.2	3.9	4	0	0	4	4	4	1	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|227827279|ref|YP_002829058.1|	-	0.0082	15.9	0.0	0.014	15.2	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4954	PF16314.5	gi|227827279|ref|YP_002829058.1|	-	0.014	13.6	1.7	0.019	13.1	1.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
CTP_transf_3	PF02348.19	gi|227827279|ref|YP_002829058.1|	-	0.029	14.3	0.0	0.1	12.5	0.0	1.7	2	0	0	2	2	2	0	Cytidylyltransferase
RmlD_sub_bind	PF04321.17	gi|227827280|ref|YP_002829059.1|	-	7.8e-54	182.7	0.0	8.5e-54	182.6	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|227827280|ref|YP_002829059.1|	-	2.7e-15	56.5	0.0	3.7e-15	56.0	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|227827280|ref|YP_002829059.1|	-	3.1e-08	33.4	0.1	3.5e-07	29.9	0.1	2.1	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|227827280|ref|YP_002829059.1|	-	5.1e-07	29.1	0.5	3.8e-05	23.0	0.0	2.8	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|227827280|ref|YP_002829059.1|	-	9.1e-05	21.7	0.1	0.00066	18.9	0.0	2.3	2	1	0	2	2	2	1	Male	sterility	protein
Ldh_1_N	PF00056.23	gi|227827280|ref|YP_002829059.1|	-	0.056	13.5	0.0	0.15	12.2	0.0	1.8	2	1	0	2	2	2	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Glycos_transf_2	PF00535.26	gi|227827282|ref|YP_002829061.1|	-	3.8e-34	118.0	0.4	6.6e-34	117.2	0.1	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227827282|ref|YP_002829061.1|	-	3.2e-17	63.2	0.0	4.8e-17	62.6	0.0	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|227827282|ref|YP_002829061.1|	-	5.7e-11	42.4	0.2	8.1e-11	41.9	0.2	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|227827282|ref|YP_002829061.1|	-	5.1e-06	26.9	0.1	1.1e-05	25.9	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_5	PF13712.6	gi|227827282|ref|YP_002829061.1|	-	1.2e-05	25.1	0.1	1.8e-05	24.5	0.1	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family
Glyco_transf_21	PF13506.6	gi|227827282|ref|YP_002829061.1|	-	0.00069	19.1	0.0	0.002	17.6	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.6	gi|227827282|ref|YP_002829061.1|	-	0.0044	17.0	0.0	0.0072	16.3	0.0	1.3	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
RGP	PF03214.13	gi|227827282|ref|YP_002829061.1|	-	0.062	12.5	0.4	0.17	11.0	0.4	1.7	1	1	0	1	1	1	0	Reversibly	glycosylated	polypeptide
Fringe	PF02434.16	gi|227827282|ref|YP_002829061.1|	-	0.091	12.2	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Fringe-like
Transposase_20	PF02371.16	gi|227827283|ref|YP_002829062.1|	-	5e-24	84.4	0.0	9.4e-24	83.5	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|227827283|ref|YP_002829062.1|	-	5.7e-08	32.8	0.0	1.6e-07	31.3	0.0	1.8	1	1	0	1	1	1	1	Transposase
XTBD	PF11952.8	gi|227827283|ref|YP_002829062.1|	-	0.091	12.5	0.3	0.25	11.1	0.1	1.8	2	0	0	2	2	2	0	XRN-Two	Binding	Domain,	XTBD
Methyltransf_21	PF05050.12	gi|227827284|ref|YP_002829063.1|	-	3.1e-11	43.6	0.1	5.6e-11	42.8	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Glycos_transf_2	PF00535.26	gi|227827285|ref|YP_002829064.1|	-	1.4e-16	60.8	1.5	2.1e-16	60.2	1.5	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227827285|ref|YP_002829064.1|	-	4.4e-06	26.8	0.0	5.9e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
HH_signal	PF01085.18	gi|227827285|ref|YP_002829064.1|	-	0.11	12.1	0.3	0.36	10.5	0.1	1.8	2	0	0	2	2	2	0	Hedgehog	amino-terminal	signalling	domain
Glycos_transf_1	PF00534.20	gi|227827286|ref|YP_002829065.1|	-	5.9e-13	48.7	0.5	1.1e-12	47.8	0.5	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227827286|ref|YP_002829065.1|	-	1.4e-10	41.7	0.0	2.6e-10	40.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227827286|ref|YP_002829065.1|	-	0.0013	19.1	0.1	0.0051	17.2	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Cauli_AT	PF03233.13	gi|227827286|ref|YP_002829065.1|	-	0.2	11.6	10.2	0.4	10.6	0.4	3.3	2	1	1	3	3	3	0	Aphid	transmission	protein
Glycos_transf_2	PF00535.26	gi|227827287|ref|YP_002829066.1|	-	4.8e-11	42.8	0.1	1.3e-10	41.4	0.1	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227827287|ref|YP_002829066.1|	-	0.017	15.0	0.0	0.53	10.1	0.0	2.2	2	0	0	2	2	2	0	Glycosyltransferase	like	family	2
Methyltransf_23	PF13489.6	gi|227827289|ref|YP_002829068.1|	-	3.6e-10	39.9	0.0	5.8e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|227827289|ref|YP_002829068.1|	-	5.9e-09	36.5	0.0	1.5e-08	35.2	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227827289|ref|YP_002829068.1|	-	2e-07	31.7	0.0	1.5e-06	28.8	0.0	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227827289|ref|YP_002829068.1|	-	4.3e-06	26.6	0.0	2.9e-05	23.9	0.0	1.9	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827289|ref|YP_002829068.1|	-	0.00055	20.6	0.0	0.0025	18.5	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227827289|ref|YP_002829068.1|	-	0.061	12.7	0.0	0.096	12.0	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
DDE_3	PF13358.6	gi|227827290|ref|YP_002829069.1|	-	8.3e-21	74.3	0.0	3.8e-20	72.1	0.0	2.1	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_29	PF13551.6	gi|227827290|ref|YP_002829069.1|	-	3.3e-16	59.0	0.0	5.9e-16	58.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|227827290|ref|YP_002829069.1|	-	7.8e-14	51.0	0.0	3.2e-13	49.1	0.0	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|227827290|ref|YP_002829069.1|	-	1.4e-11	44.3	0.1	3.6e-11	43.0	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|227827290|ref|YP_002829069.1|	-	5.7e-08	32.7	0.1	1.7e-07	31.2	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
Terminase_5	PF06056.12	gi|227827290|ref|YP_002829069.1|	-	4.9e-07	29.5	0.1	1e-06	28.5	0.1	1.6	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_17	PF12728.7	gi|227827290|ref|YP_002829069.1|	-	1.7e-05	24.9	0.1	4.8e-05	23.4	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|227827290|ref|YP_002829069.1|	-	2e-05	24.2	0.1	8.2e-05	22.2	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR	PF01047.22	gi|227827290|ref|YP_002829069.1|	-	2.3e-05	24.2	0.0	6e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.6	gi|227827290|ref|YP_002829069.1|	-	4.9e-05	23.0	0.2	0.00016	21.3	0.0	2.0	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.20	gi|227827290|ref|YP_002829069.1|	-	0.0001	22.6	0.3	0.00029	21.1	0.3	1.8	1	0	0	1	1	1	1	Transposase
HTH_32	PF13565.6	gi|227827290|ref|YP_002829069.1|	-	0.00022	21.8	0.4	0.00098	19.7	0.1	2.3	2	1	0	2	2	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|227827290|ref|YP_002829069.1|	-	0.00047	20.0	0.0	0.0013	18.5	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|227827290|ref|YP_002829069.1|	-	0.0012	18.6	0.0	0.0025	17.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_40	PF14493.6	gi|227827290|ref|YP_002829069.1|	-	0.0013	19.2	1.3	0.0031	17.9	1.3	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_1_2	PF13022.6	gi|227827290|ref|YP_002829069.1|	-	0.0039	17.3	0.8	0.039	14.1	0.1	2.7	3	0	0	3	3	3	1	Helix-turn-helix	of	insertion	element	transposase
Fe_dep_repress	PF01325.19	gi|227827290|ref|YP_002829069.1|	-	0.013	15.7	0.0	0.031	14.5	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|227827290|ref|YP_002829069.1|	-	0.015	15.2	0.1	0.077	13.0	0.0	2.3	2	0	0	2	2	1	0	HTH	domain
HTH_Tnp_IS630	PF01710.16	gi|227827290|ref|YP_002829069.1|	-	0.016	15.3	6.5	0.03	14.4	6.5	1.5	1	0	0	1	1	1	0	Transposase
MarR_2	PF12802.7	gi|227827290|ref|YP_002829069.1|	-	0.022	14.6	0.0	0.046	13.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Sigma54_DBD	PF04552.13	gi|227827290|ref|YP_002829069.1|	-	0.022	14.5	0.3	0.051	13.3	0.0	1.7	2	0	0	2	2	2	0	Sigma-54,	DNA	binding	domain
HTH_36	PF13730.6	gi|227827290|ref|YP_002829069.1|	-	0.022	14.7	1.2	0.034	14.1	0.0	2.0	2	0	0	2	2	1	0	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|227827290|ref|YP_002829069.1|	-	0.03	14.9	0.0	0.063	13.8	0.0	1.5	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_ISL3	PF13542.6	gi|227827290|ref|YP_002829069.1|	-	0.031	13.7	0.0	0.057	12.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF1492	PF07374.11	gi|227827290|ref|YP_002829069.1|	-	0.033	14.4	0.4	0.095	12.9	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1492)
HTH_Tnp_4	PF13613.6	gi|227827290|ref|YP_002829069.1|	-	0.036	13.8	0.0	0.11	12.3	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
TnsD	PF15978.5	gi|227827290|ref|YP_002829069.1|	-	0.039	12.9	3.9	0.055	12.5	3.9	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
MerR_1	PF13411.6	gi|227827290|ref|YP_002829069.1|	-	0.042	13.9	0.1	0.14	12.3	0.1	1.9	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.22	gi|227827290|ref|YP_002829069.1|	-	0.057	13.5	0.0	0.16	12.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
DUF4817	PF16087.5	gi|227827290|ref|YP_002829069.1|	-	0.062	13.1	0.4	0.22	11.3	0.1	2.1	2	0	0	2	2	1	0	Helix-turn-helix	domain	(DUF4817)
CutA1	PF03091.15	gi|227827290|ref|YP_002829069.1|	-	0.12	12.3	0.6	0.25	11.2	0.6	1.6	1	0	0	1	1	1	0	CutA1	divalent	ion	tolerance	protein
GerE	PF00196.19	gi|227827290|ref|YP_002829069.1|	-	0.12	11.9	0.4	5.2	6.7	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_20	PF12840.7	gi|227827290|ref|YP_002829069.1|	-	0.13	12.4	0.0	0.25	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Phage_terminase	PF10668.9	gi|227827290|ref|YP_002829069.1|	-	0.17	11.9	0.9	0.53	10.3	0.1	2.2	2	0	0	2	2	2	0	Phage	terminase	small	subunit
Glycos_transf_2	PF00535.26	gi|227827292|ref|YP_002829071.1|	-	8.2e-11	42.0	0.4	1.5e-10	41.1	0.4	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Transposase_20	PF02371.16	gi|227827293|ref|YP_002829072.1|	-	2.4e-21	75.8	0.0	4.3e-21	75.0	0.0	1.4	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|227827293|ref|YP_002829072.1|	-	1.3e-10	41.4	0.0	2.8e-10	40.3	0.0	1.5	1	0	0	1	1	1	1	Transposase
FlgN	PF05130.12	gi|227827293|ref|YP_002829072.1|	-	0.022	15.3	8.5	0.08	13.5	8.6	1.8	1	1	0	1	1	1	0	FlgN	protein
TMCCDC2	PF15844.5	gi|227827293|ref|YP_002829072.1|	-	0.026	14.5	3.2	0.039	13.9	3.2	1.2	1	0	0	1	1	1	0	Transmembrane	and	coiled-coil	domain-containing	protein	2
ArsA_ATPase	PF02374.15	gi|227827293|ref|YP_002829072.1|	-	0.07	12.3	1.7	0.1	11.7	1.7	1.2	1	0	0	1	1	1	0	Anion-transporting	ATPase
Laminin_II	PF06009.12	gi|227827293|ref|YP_002829072.1|	-	0.092	12.8	3.8	0.26	11.3	3.3	2.0	1	1	1	2	2	2	0	Laminin	Domain	II
Cas_DxTHG	PF09455.10	gi|227827293|ref|YP_002829072.1|	-	0.12	11.9	1.2	0.16	11.6	1.2	1.1	1	0	0	1	1	1	0	CRISPR-associated	(Cas)	DxTHG	family
Sec3_C	PF09763.9	gi|227827293|ref|YP_002829072.1|	-	0.37	9.1	4.4	0.43	8.9	2.8	1.8	3	0	0	3	3	3	0	Exocyst	complex	component	Sec3
DUF4709	PF15821.5	gi|227827293|ref|YP_002829072.1|	-	2	8.8	7.8	1	9.7	2.1	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4709)
Polysacc_synt	PF01943.17	gi|227827295|ref|YP_002829074.1|	-	4.1e-07	29.7	33.2	4.1e-07	29.7	33.2	2.2	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
RAMPs	PF03787.15	gi|227827296|ref|YP_002829075.1|	-	1.1e-26	94.2	0.1	1.7e-26	93.6	0.1	1.3	1	1	0	1	1	1	1	RAMP	superfamily
PBECR4	PF18813.1	gi|227827296|ref|YP_002829075.1|	-	0.0094	16.2	2.2	0.011	16.0	0.8	1.7	2	0	0	2	2	2	1	phage-Barnase-EndoU-ColicinE5/D-RelE	like	nuclease4
Cas_Cmr5	PF09701.10	gi|227827297|ref|YP_002829076.1|	-	0.00055	20.2	0.0	0.0011	19.2	0.0	1.5	1	1	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cmr5)
Big_3_4	PF13754.6	gi|227827297|ref|YP_002829076.1|	-	0.024	14.4	0.0	0.039	13.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function
RAMPs	PF03787.15	gi|227827298|ref|YP_002829077.1|	-	2.1e-09	37.7	0.5	2.1e-09	37.7	0.5	3.1	2	2	0	2	2	2	1	RAMP	superfamily
DUSP	PF06337.12	gi|227827298|ref|YP_002829077.1|	-	0.04	14.5	1.1	0.11	13.1	0.1	2.3	2	1	0	2	2	2	0	DUSP	domain
Phage_FRD3	PF05798.11	gi|227827298|ref|YP_002829077.1|	-	0.069	13.4	0.6	0.29	11.4	0.3	2.2	2	0	0	2	2	2	0	Bacteriophage	FRD3	protein
RAMPs	PF03787.15	gi|227827299|ref|YP_002829078.1|	-	9.4e-11	42.2	6.1	2.2e-08	34.4	6.1	2.6	1	1	0	1	1	1	1	RAMP	superfamily
HAD_2	PF13419.6	gi|227827299|ref|YP_002829078.1|	-	0.037	14.1	0.6	0.075	13.1	0.6	1.5	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DUF3692	PF12469.8	gi|227827300|ref|YP_002829079.1|	-	1.1e-27	96.4	0.1	4.2e-27	94.6	0.0	2.1	2	0	0	2	2	2	1	CRISPR-associated	protein
tRNA_synt_1c_R1	PF04558.15	gi|227827300|ref|YP_002829079.1|	-	0.058	13.4	1.1	0.19	11.7	0.0	2.5	3	0	0	3	3	3	0	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	1
mCpol	PF18182.1	gi|227827300|ref|YP_002829079.1|	-	0.095	13.0	0.6	5	7.5	0.0	3.0	2	1	1	3	3	3	0	minimal	CRISPR	polymerase	domain
PilJ_C	PF18223.1	gi|227827300|ref|YP_002829079.1|	-	0.16	12.5	3.5	0.2	12.2	0.5	2.7	2	0	0	2	2	2	0	Pili	PilJ	C-terminal	domain
NusA_N	PF08529.11	gi|227827300|ref|YP_002829079.1|	-	0.28	11.6	4.2	0.31	11.4	0.4	2.6	2	0	0	2	2	2	0	NusA	N-terminal	domain
AGOG	PF09171.10	gi|227827300|ref|YP_002829079.1|	-	5.3	6.3	10.2	0.68	9.2	0.1	3.6	4	0	0	4	4	4	0	N-glycosylase/DNA	lyase
Cas_Cmr3	PF09700.10	gi|227827301|ref|YP_002829080.1|	-	1.6e-16	60.7	0.0	1.8e-07	30.9	0.0	2.6	2	1	0	3	3	3	2	CRISPR-associated	protein	(Cas_Cmr3)
DisA-linker	PF10635.9	gi|227827301|ref|YP_002829080.1|	-	0.026	14.3	2.3	1.2	8.9	0.5	2.4	1	1	1	2	2	2	0	DisA	bacterial	checkpoint	controller	linker	region
MinE	PF03776.14	gi|227827301|ref|YP_002829080.1|	-	0.45	10.6	3.3	1.8	8.6	0.0	2.4	1	1	1	2	2	2	0	Septum	formation	topological	specificity	factor	MinE
DUF3800	PF12686.7	gi|227827305|ref|YP_002829084.1|	-	5.3e-05	23.8	1.1	0.00037	21.1	1.1	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3800)
DUF4327	PF14217.6	gi|227827305|ref|YP_002829084.1|	-	0.091	12.9	0.3	0.22	11.7	0.2	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4327)
PIN	PF01850.21	gi|227827306|ref|YP_002829085.1|	-	6.5e-12	46.0	0.4	9.1e-12	45.6	0.4	1.1	1	0	0	1	1	1	1	PIN	domain
DUF5615	PF18480.1	gi|227827306|ref|YP_002829085.1|	-	0.031	14.0	0.0	0.063	13.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
Rick_17kDa_Anti	PF05433.15	gi|227827307|ref|YP_002829086.1|	-	3.9e-09	36.2	1.5	6.4e-09	35.5	1.5	1.3	1	0	0	1	1	1	1	Glycine	zipper	2TM	domain
Gly-zipper_Omp	PF13488.6	gi|227827307|ref|YP_002829086.1|	-	6.3e-06	26.1	2.6	9.7e-06	25.5	2.6	1.3	1	0	0	1	1	1	1	Glycine	zipper
Gly-zipper_YMGG	PF13441.6	gi|227827307|ref|YP_002829086.1|	-	2.9e-05	23.7	3.1	5.7e-05	22.8	3.1	1.4	1	1	0	1	1	1	1	YMGG-like	Gly-zipper
TraT	PF05818.12	gi|227827307|ref|YP_002829086.1|	-	5.3e-05	23.0	0.0	6.4e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Enterobacterial	TraT	complement	resistance	protein
GRDA	PF04723.14	gi|227827307|ref|YP_002829086.1|	-	0.0057	16.4	0.0	0.0065	16.3	0.0	1.2	1	0	0	1	1	1	1	Glycine	reductase	complex	selenoprotein	A
PT-VENN	PF04829.13	gi|227827307|ref|YP_002829086.1|	-	0.012	15.7	1.6	2	8.6	0.1	2.2	2	0	0	2	2	2	0	Pre-toxin	domain	with	VENN	motif
FUSC_2	PF13515.6	gi|227827307|ref|YP_002829086.1|	-	0.028	14.5	0.5	1.1	9.4	0.2	2.1	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein-like
DUF456	PF04306.13	gi|227827307|ref|YP_002829086.1|	-	0.037	14.3	0.6	0.052	13.8	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF456)
Romo1	PF10247.9	gi|227827307|ref|YP_002829086.1|	-	0.13	12.6	1.5	8.5	6.8	0.1	2.2	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
Gly-zipper_OmpA	PF13436.6	gi|227827307|ref|YP_002829086.1|	-	0.15	11.8	3.5	0.62	9.9	3.5	1.8	1	1	0	1	1	1	0	Glycine-zipper	domain
DUF1269	PF06897.12	gi|227827307|ref|YP_002829086.1|	-	0.18	12.1	2.7	1.4	9.2	2.7	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1269)
Beta-APP	PF03494.13	gi|227827307|ref|YP_002829086.1|	-	0.47	10.3	0.2	0.47	10.3	0.2	2.2	2	0	0	2	2	2	0	Beta-amyloid	peptide	(beta-APP)
TM_helix	PF05552.12	gi|227827307|ref|YP_002829086.1|	-	0.55	10.3	3.7	12	5.9	0.4	2.3	2	0	0	2	2	2	0	Conserved	TM	helix
TauE	PF01925.19	gi|227827307|ref|YP_002829086.1|	-	0.58	9.7	3.8	8.9	5.9	3.8	1.9	1	1	0	1	1	1	0	Sulfite	exporter	TauE/SafE
DUF2273	PF10031.9	gi|227827307|ref|YP_002829086.1|	-	3.8	7.6	9.6	5.9	7.0	1.8	2.2	2	0	0	2	2	2	0	Small	integral	membrane	protein	(DUF2273)
RAMPs	PF03787.15	gi|227827309|ref|YP_002829088.1|	-	1.6e-16	61.0	4.8	1.6e-16	61.0	4.8	2.1	2	1	0	2	2	2	1	RAMP	superfamily
Ret2_MD	PF18528.1	gi|227827309|ref|YP_002829088.1|	-	0.075	13.4	0.0	0.21	12.0	0.0	1.8	1	0	0	1	1	1	0	RNA	editing	3'	terminal	uridylyl	transferase	2	middle	domain
Asp_protease_2	PF13650.6	gi|227827310|ref|YP_002829089.1|	-	0.065	13.9	0.0	0.13	12.9	0.0	1.4	1	1	0	1	1	1	0	Aspartyl	protease
RAMPs	PF03787.15	gi|227827311|ref|YP_002829090.1|	-	3.3e-11	43.6	0.0	6.3e-11	42.7	0.0	1.5	1	1	0	1	1	1	1	RAMP	superfamily
Ist1	PF03398.14	gi|227827311|ref|YP_002829090.1|	-	0.004	17.1	0.5	0.0068	16.4	0.5	1.3	1	0	0	1	1	1	1	Regulator	of	Vps4	activity	in	the	MVB	pathway
NDK	PF00334.19	gi|227827311|ref|YP_002829090.1|	-	0.026	14.5	0.1	0.1	12.6	0.0	1.9	1	1	1	2	2	2	0	Nucleoside	diphosphate	kinase
DAHP_synth_2	PF01474.16	gi|227827311|ref|YP_002829090.1|	-	0.11	11.0	0.2	0.15	10.5	0.2	1.1	1	0	0	1	1	1	0	Class-II	DAHP	synthetase	family
Baculo_PEP_C	PF04513.12	gi|227827314|ref|YP_002829093.1|	-	1.2	9.2	15.9	0.93	9.5	13.1	2.4	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Glycos_transf_1	PF00534.20	gi|227827315|ref|YP_002829094.1|	-	4.3e-16	58.9	0.0	7.2e-16	58.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227827315|ref|YP_002829094.1|	-	2.3e-12	47.5	0.0	4.1e-12	46.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227827315|ref|YP_002829094.1|	-	5.3e-08	33.1	0.0	1.6e-07	31.6	0.0	1.8	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227827315|ref|YP_002829094.1|	-	0.068	13.2	0.0	0.13	12.2	0.0	1.5	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
ATPase_2	PF01637.18	gi|227827316|ref|YP_002829095.1|	-	2.7e-07	30.7	0.8	3.1e-07	30.5	0.8	1.1	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|227827316|ref|YP_002829095.1|	-	3.4e-06	27.1	0.3	5e-06	26.6	0.3	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|227827316|ref|YP_002829095.1|	-	8.9e-06	26.2	0.0	9.9e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227827316|ref|YP_002829095.1|	-	0.0001	22.6	0.0	0.00015	22.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|227827316|ref|YP_002829095.1|	-	0.00026	21.4	0.0	0.00036	21.0	0.0	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRPRB	PF09439.10	gi|227827316|ref|YP_002829095.1|	-	0.0024	17.3	2.1	0.036	13.5	0.1	2.1	1	1	1	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
BLOC1_2	PF10046.9	gi|227827316|ref|YP_002829095.1|	-	0.0031	17.8	0.3	0.0051	17.1	0.3	1.3	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_35	PF14516.6	gi|227827316|ref|YP_002829095.1|	-	0.0079	15.1	0.0	0.0088	14.9	0.0	1.1	1	0	0	1	1	1	1	AAA-like	domain
Roc	PF08477.13	gi|227827316|ref|YP_002829095.1|	-	0.018	15.2	0.2	0.027	14.7	0.1	1.5	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
DUF815	PF05673.13	gi|227827316|ref|YP_002829095.1|	-	0.055	12.6	0.0	0.061	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
DUF3644	PF12358.8	gi|227827316|ref|YP_002829095.1|	-	0.098	13.2	1.7	0.19	12.2	1.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3644)
L27_2	PF09045.10	gi|227827316|ref|YP_002829095.1|	-	0.24	11.4	2.4	2.9	7.9	0.2	2.5	2	1	1	3	3	3	0	L27_2
DUF4322	PF14210.6	gi|227827317|ref|YP_002829096.1|	-	5.2e-26	90.3	0.1	1.7e-25	88.7	0.1	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|227827317|ref|YP_002829096.1|	-	1.4e-09	38.0	0.3	2.9e-09	36.9	0.3	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
HTH_23	PF13384.6	gi|227827317|ref|YP_002829096.1|	-	0.086	12.7	0.0	0.33	10.8	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
Transgly	PF00912.22	gi|227827317|ref|YP_002829096.1|	-	1.4	8.4	4.0	15	5.0	0.2	2.4	2	1	0	2	2	2	0	Transglycosylase
HEPN	PF05168.14	gi|227827318|ref|YP_002829097.1|	-	4e-36	123.7	4.0	4.7e-36	123.5	4.0	1.0	1	0	0	1	1	1	1	HEPN	domain
TPR_2	PF07719.17	gi|227827318|ref|YP_002829097.1|	-	4.6	7.6	6.4	5.2	7.4	0.1	3.0	3	0	0	3	3	3	0	Tetratricopeptide	repeat
DUF5633	PF18656.1	gi|227827318|ref|YP_002829097.1|	-	5.2	7.0	10.8	0.82	9.6	2.1	3.0	2	1	1	3	3	3	0	Family	of	unknown	function	(DUF5633)
NTP_transf_2	PF01909.23	gi|227827319|ref|YP_002829098.1|	-	2.5e-11	43.7	0.4	3.4e-11	43.3	0.4	1.4	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227827319|ref|YP_002829098.1|	-	9e-07	28.9	0.2	1.3e-06	28.3	0.2	1.4	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|227827319|ref|YP_002829098.1|	-	0.045	13.5	0.0	0.068	13.0	0.0	1.5	1	1	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
Adenyl_cycl_N	PF12633.7	gi|227827319|ref|YP_002829098.1|	-	0.14	12.0	0.0	0.21	11.5	0.0	1.5	1	1	0	1	1	1	0	Adenylate	cyclase	NT	domain
Penicil_amidase	PF01804.18	gi|227827320|ref|YP_002829099.1|	-	9.1e-149	497.5	0.0	1.1e-148	497.2	0.0	1.0	1	0	0	1	1	1	1	Penicillin	amidase
PTS_EIIC_2	PF13303.6	gi|227827321|ref|YP_002829100.1|	-	0.019	14.0	7.4	0.026	13.6	7.4	1.1	1	0	0	1	1	1	0	Phosphotransferase	system,	EIIC
LptF_LptG	PF03739.14	gi|227827321|ref|YP_002829100.1|	-	0.34	9.7	14.1	0.41	9.4	14.1	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	export	system	permease	LptF/LptG
Caveolin	PF01146.17	gi|227827321|ref|YP_002829100.1|	-	1.1	9.2	5.2	1.6	8.7	4.7	1.6	1	1	0	1	1	1	0	Caveolin
DUF2204	PF09970.9	gi|227827326|ref|YP_002829105.1|	-	0.0021	17.8	0.9	0.0077	15.9	0.1	2.0	2	0	0	2	2	2	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
Acetyltransf_CG	PF14542.6	gi|227827326|ref|YP_002829105.1|	-	0.13	12.4	0.0	2.7	8.2	0.0	2.3	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
RHH_1	PF01402.21	gi|227827327|ref|YP_002829106.1|	-	0.054	13.4	0.0	0.12	12.3	0.0	1.7	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Glyco_transf_17	PF04724.13	gi|227827327|ref|YP_002829106.1|	-	1.3	8.0	3.3	7.9	5.4	0.4	2.1	1	1	1	2	2	2	0	Glycosyltransferase	family	17
Radical_SAM	PF04055.21	gi|227827328|ref|YP_002829107.1|	-	1.1e-27	97.5	0.0	4e-25	89.1	0.0	2.3	1	1	1	2	2	2	2	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227827328|ref|YP_002829107.1|	-	1.4e-09	38.3	0.0	3.3e-09	37.1	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|227827328|ref|YP_002829107.1|	-	8.4e-09	35.8	1.9	1.2e-08	35.3	0.3	2.0	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.6	gi|227827328|ref|YP_002829107.1|	-	1e-07	32.1	0.0	2e-07	31.2	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
AP_endonuc_2	PF01261.24	gi|227827328|ref|YP_002829107.1|	-	7.5e-05	22.3	0.0	0.033	13.6	0.0	2.4	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
Radical_SAM	PF04055.21	gi|227827329|ref|YP_002829108.1|	-	2.4e-17	63.8	0.0	6.9e-16	59.1	0.0	2.3	1	1	1	2	2	2	1	Radical	SAM	superfamily
SPASM	PF13186.6	gi|227827329|ref|YP_002829108.1|	-	4e-06	27.3	0.0	1.4e-05	25.5	0.0	1.9	1	1	1	2	2	2	1	Iron-sulfur	cluster-binding	domain
Fer4_12	PF13353.6	gi|227827329|ref|YP_002829108.1|	-	6.7e-06	26.4	0.0	1.2e-05	25.6	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|227827329|ref|YP_002829108.1|	-	0.00039	20.5	0.0	0.00085	19.5	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
IF2_N	PF04760.15	gi|227827329|ref|YP_002829108.1|	-	0.037	13.9	0.2	2	8.3	0.0	3.3	3	0	0	3	3	3	0	Translation	initiation	factor	IF-2,	N-terminal	region
Aldedh	PF00171.22	gi|227827330|ref|YP_002829109.1|	-	1.4e-149	498.6	0.1	1.6e-149	498.4	0.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
DUF4310	PF14187.6	gi|227827330|ref|YP_002829109.1|	-	0.046	13.4	0.1	0.074	12.7	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4310)
DUF2204	PF09970.9	gi|227827331|ref|YP_002829110.1|	-	0.00035	20.2	0.4	0.009	15.7	0.1	2.1	2	0	0	2	2	2	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
NTP_transf_5	PF14907.6	gi|227827331|ref|YP_002829110.1|	-	0.0013	18.4	0.1	0.0025	17.5	0.0	1.4	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|227827331|ref|YP_002829110.1|	-	0.038	13.9	0.1	0.047	13.6	0.1	1.3	1	0	0	1	1	1	0	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
Nif11	PF07862.11	gi|227827331|ref|YP_002829110.1|	-	0.11	12.9	0.1	0.92	9.9	0.1	2.5	2	1	0	2	2	2	0	Nif11	domain
DUF4951	PF16309.5	gi|227827332|ref|YP_002829111.1|	-	0.082	13.0	0.1	0.1	12.7	0.1	1.1	1	0	0	1	1	1	0	Domian	of	unknown	function	(DUF4951)
PIN	PF01850.21	gi|227827333|ref|YP_002829112.1|	-	2e-19	70.3	0.9	2.5e-19	70.0	0.9	1.0	1	0	0	1	1	1	1	PIN	domain
CcdA	PF07362.12	gi|227827334|ref|YP_002829113.1|	-	0.00058	20.2	0.2	0.00076	19.9	0.2	1.2	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
ThiP_synth	PF10120.9	gi|227827334|ref|YP_002829113.1|	-	0.0054	16.4	0.2	0.0056	16.3	0.2	1.1	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
RelB	PF04221.12	gi|227827334|ref|YP_002829113.1|	-	0.0059	16.5	0.1	0.0077	16.2	0.1	1.3	1	0	0	1	1	1	1	RelB	antitoxin
MCM6_C	PF18263.1	gi|227827334|ref|YP_002829113.1|	-	0.024	14.9	2.4	0.025	14.8	2.4	1.1	1	0	0	1	1	1	0	MCM6	C-terminal	winged-helix	domain
POTRA_TamA_1	PF17243.2	gi|227827334|ref|YP_002829113.1|	-	0.088	12.9	0.6	0.13	12.3	0.6	1.4	1	1	0	1	1	1	0	POTRA	domain	TamA	domain	1
Mcm10	PF09332.11	gi|227827334|ref|YP_002829113.1|	-	0.25	10.7	2.6	0.29	10.5	2.6	1.1	1	0	0	1	1	1	0	Mcm10	replication	factor
RHH_1	PF01402.21	gi|227827334|ref|YP_002829113.1|	-	0.71	9.9	11.0	0.096	12.7	2.6	3.3	2	1	1	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
DDE_Tnp_IS240	PF13610.6	gi|227827335|ref|YP_002829114.1|	-	7.6e-06	26.2	1.1	1.3e-05	25.4	0.8	1.4	2	0	0	2	2	2	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227827335|ref|YP_002829114.1|	-	0.0015	18.1	0.0	0.0029	17.1	0.0	1.4	1	1	0	1	1	1	1	Transposase	IS66	family
MFS_1	PF07690.16	gi|227827336|ref|YP_002829115.1|	-	4.2e-19	68.7	75.4	2.3e-14	53.1	35.1	2.1	1	1	0	2	2	2	2	Major	Facilitator	Superfamily
Tim17	PF02466.19	gi|227827336|ref|YP_002829115.1|	-	0.01	16.2	1.4	0.01	16.2	1.4	2.4	3	0	0	3	3	3	0	Tim17/Tim22/Tim23/Pmp24	family
Sugar_tr	PF00083.24	gi|227827337|ref|YP_002829116.1|	-	3.5e-50	171.2	18.1	4.1e-50	171.0	18.1	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227827337|ref|YP_002829116.1|	-	1.3e-23	83.5	36.5	2.6e-12	46.3	14.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
GTA_holin_3TM	PF11351.8	gi|227827337|ref|YP_002829116.1|	-	0.22	12.1	0.3	0.6	10.7	0.0	1.9	2	0	0	2	2	2	0	Holin	of	3TMs,	for	gene-transfer	release
Methyltransf_11	PF08241.12	gi|227827338|ref|YP_002829117.1|	-	1.5e-14	54.4	0.0	2.2e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827338|ref|YP_002829117.1|	-	6.5e-11	42.8	0.0	1.3e-10	41.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227827338|ref|YP_002829117.1|	-	2.4e-10	40.4	0.2	5.9e-10	39.1	0.2	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227827338|ref|YP_002829117.1|	-	7.2e-10	38.9	0.0	2e-09	37.5	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227827338|ref|YP_002829117.1|	-	4e-09	37.1	0.0	7e-09	36.3	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|227827338|ref|YP_002829117.1|	-	1.5e-05	24.6	0.0	3.3e-05	23.5	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.15	gi|227827338|ref|YP_002829117.1|	-	0.00037	20.4	0.0	0.00049	20.0	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Ubie_methyltran	PF01209.18	gi|227827338|ref|YP_002829117.1|	-	0.00063	19.1	0.0	0.0013	18.1	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_32	PF13679.6	gi|227827338|ref|YP_002829117.1|	-	0.0031	17.5	0.0	0.0069	16.4	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_33	PF10017.9	gi|227827338|ref|YP_002829117.1|	-	0.024	13.8	0.0	0.036	13.2	0.0	1.3	1	1	0	1	1	1	0	Histidine-specific	methyltransferase,	SAM-dependent
Methyltransf_2	PF00891.18	gi|227827338|ref|YP_002829117.1|	-	0.028	13.7	0.0	0.046	13.0	0.0	1.4	1	1	0	1	1	1	0	O-methyltransferase	domain
TPMT	PF05724.11	gi|227827338|ref|YP_002829117.1|	-	0.062	12.9	0.0	0.69	9.5	0.0	2.0	1	1	1	2	2	2	0	Thiopurine	S-methyltransferase	(TPMT)
DREV	PF05219.12	gi|227827338|ref|YP_002829117.1|	-	0.075	12.1	0.0	0.1	11.7	0.0	1.1	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_29	PF03141.16	gi|227827338|ref|YP_002829117.1|	-	0.1	11.1	0.0	4.8	5.6	0.0	2.0	2	0	0	2	2	2	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Aminotran_1_2	PF00155.21	gi|227827339|ref|YP_002829118.1|	-	3.2e-52	177.9	0.0	4.1e-52	177.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|227827339|ref|YP_002829118.1|	-	1.1e-12	47.7	0.0	1.8e-12	46.9	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|227827339|ref|YP_002829118.1|	-	3.4e-08	32.4	0.0	5.8e-08	31.7	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|227827339|ref|YP_002829118.1|	-	1.4e-05	24.5	0.0	1.9e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Alliinase_C	PF04864.13	gi|227827339|ref|YP_002829118.1|	-	5e-05	22.4	0.1	0.00095	18.1	0.1	2.1	1	1	0	2	2	2	1	Allinase
DegT_DnrJ_EryC1	PF01041.17	gi|227827339|ref|YP_002829118.1|	-	0.00074	18.9	0.0	0.001	18.4	0.0	1.1	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
PhdYeFM_antitox	PF02604.19	gi|227827339|ref|YP_002829118.1|	-	0.068	13.0	0.1	0.24	11.2	0.0	1.9	2	0	0	2	2	2	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
Aminotran_3	PF00202.21	gi|227827339|ref|YP_002829118.1|	-	0.17	10.5	0.0	0.58	8.7	0.0	1.7	2	0	0	2	2	2	0	Aminotransferase	class-III
Hjc	PF01870.18	gi|227827340|ref|YP_002829119.1|	-	6.7e-30	102.9	0.0	9.4e-30	102.5	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
AHJR-like	PF18743.1	gi|227827340|ref|YP_002829119.1|	-	0.033	13.7	0.1	0.13	11.8	0.1	1.9	1	1	0	1	1	1	0	REase_AHJR-like
Imm6	PF14434.6	gi|227827341|ref|YP_002829120.1|	-	0.048	13.6	0.3	0.095	12.6	0.3	1.4	1	0	0	1	1	1	0	Immunity	protein	Imm6
Na_Ca_ex	PF01699.24	gi|227827342|ref|YP_002829121.1|	-	1.4e-32	112.8	37.9	4.6e-18	65.6	19.3	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
YdjM	PF04307.14	gi|227827342|ref|YP_002829121.1|	-	0.072	12.4	0.2	0.19	11.0	0.2	1.9	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF2231	PF09990.9	gi|227827342|ref|YP_002829121.1|	-	3.1	8.3	7.4	0.71	10.3	1.8	2.7	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2231)
AA_permease_2	PF13520.6	gi|227827343|ref|YP_002829122.1|	-	1e-09	37.8	58.5	1.4e-09	37.4	58.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227827343|ref|YP_002829122.1|	-	3.2e-08	32.6	56.5	2.1e-06	26.6	56.5	2.9	1	1	0	1	1	1	1	Amino	acid	permease
Glyco_hydro_57	PF03065.15	gi|227827344|ref|YP_002829123.1|	-	2.7e-42	145.1	1.8	3.7e-35	121.7	0.0	2.3	1	1	1	2	2	2	2	Glycosyl	hydrolase	family	57
TcfC	PF16967.5	gi|227827344|ref|YP_002829123.1|	-	0.00047	19.6	0.5	0.0025	17.2	0.0	2.4	3	0	0	3	3	3	1	E-set	like	domain
SBP_bac_8	PF13416.6	gi|227827345|ref|YP_002829124.1|	-	1.1e-19	71.4	10.5	1.1e-19	71.4	10.5	1.6	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SecE	PF00584.20	gi|227827345|ref|YP_002829124.1|	-	0.015	15.2	0.9	0.03	14.3	0.9	1.5	1	0	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
DUF1634	PF07843.11	gi|227827345|ref|YP_002829124.1|	-	0.036	14.1	1.0	0.036	14.1	1.0	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1634)
Wzz	PF02706.15	gi|227827345|ref|YP_002829124.1|	-	0.055	13.8	0.7	0.18	12.1	0.7	1.9	1	0	0	1	1	1	0	Chain	length	determinant	protein
5TM-5TMR_LYT	PF07694.12	gi|227827345|ref|YP_002829124.1|	-	0.75	9.3	6.7	1.1	8.8	1.1	2.3	2	0	0	2	2	2	0	5TMR	of	5TMR-LYT
BPD_transp_1	PF00528.22	gi|227827346|ref|YP_002829125.1|	-	7.3e-15	55.2	23.0	7.3e-15	55.2	23.0	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Pox_A9	PF04835.12	gi|227827346|ref|YP_002829125.1|	-	0.44	10.7	6.4	0.23	11.6	0.8	2.7	2	0	0	2	2	2	0	A9	protein	conserved	region
TM_PBP2_N	PF16296.5	gi|227827346|ref|YP_002829125.1|	-	6.6	6.9	9.8	0.66	10.1	3.0	2.3	2	0	0	2	2	2	0	N-terminal	of	TM	subunit	in	PBP-dependent	ABC	transporters
BPD_transp_1	PF00528.22	gi|227827347|ref|YP_002829126.1|	-	1.1e-12	48.1	22.4	1.1e-12	48.1	22.4	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|227827348|ref|YP_002829127.1|	-	2.3e-30	105.9	0.0	5.3e-30	104.7	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|227827348|ref|YP_002829127.1|	-	3.6e-11	43.7	0.3	1.3e-10	42.0	0.2	2.1	2	0	0	2	2	1	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|227827348|ref|YP_002829127.1|	-	3.7e-10	39.8	0.1	8e-10	38.7	0.1	1.6	1	0	0	1	1	1	1	TOBE	domain
CysA_C_terminal	PF17850.1	gi|227827348|ref|YP_002829127.1|	-	2.5e-07	31.1	0.1	9e-07	29.4	0.0	2.0	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
AAA_21	PF13304.6	gi|227827348|ref|YP_002829127.1|	-	3.6e-06	27.0	0.2	0.074	12.9	0.1	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|227827348|ref|YP_002829127.1|	-	0.00056	20.1	0.0	0.0025	18.1	0.0	2.2	1	0	0	1	1	1	1	TOBE	domain
RsgA_GTPase	PF03193.16	gi|227827348|ref|YP_002829127.1|	-	0.00078	19.4	0.7	0.029	14.3	0.0	2.7	3	0	0	3	3	3	1	RsgA	GTPase
SMC_N	PF02463.19	gi|227827348|ref|YP_002829127.1|	-	0.001	18.5	0.1	0.21	11.0	0.2	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|227827348|ref|YP_002829127.1|	-	0.0032	17.9	0.0	0.0056	17.1	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|227827348|ref|YP_002829127.1|	-	0.004	17.7	0.7	0.013	16.1	0.0	2.2	3	0	0	3	3	2	1	AAA	domain
ATPase_2	PF01637.18	gi|227827348|ref|YP_002829127.1|	-	0.0071	16.3	0.1	0.015	15.2	0.0	1.8	2	0	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
NTPase_1	PF03266.15	gi|227827348|ref|YP_002829127.1|	-	0.0082	16.1	0.1	0.33	10.8	0.0	2.5	2	0	0	2	2	2	1	NTPase
AAA_30	PF13604.6	gi|227827348|ref|YP_002829127.1|	-	0.0082	15.9	0.0	0.019	14.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|227827348|ref|YP_002829127.1|	-	0.0096	16.0	0.0	1.9	8.6	0.0	2.8	2	1	1	3	3	3	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IstB_IS21	PF01695.17	gi|227827348|ref|YP_002829127.1|	-	0.013	15.2	0.0	0.025	14.3	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|227827348|ref|YP_002829127.1|	-	0.014	15.1	0.0	0.028	14.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|227827348|ref|YP_002829127.1|	-	0.021	14.8	0.0	0.049	13.5	0.0	1.6	2	0	0	2	2	1	0	Rad17	P-loop	domain
NACHT	PF05729.12	gi|227827348|ref|YP_002829127.1|	-	0.035	14.0	0.0	0.077	12.9	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_22	PF13401.6	gi|227827348|ref|YP_002829127.1|	-	0.052	13.8	0.0	0.14	12.5	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|227827348|ref|YP_002829127.1|	-	0.084	13.1	0.0	0.4	10.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|227827348|ref|YP_002829127.1|	-	0.088	13.1	0.2	0.16	12.3	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|227827348|ref|YP_002829127.1|	-	0.12	12.8	0.4	0.38	11.2	0.4	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|227827348|ref|YP_002829127.1|	-	0.15	12.4	0.0	0.36	11.3	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_33	PF13671.6	gi|227827348|ref|YP_002829127.1|	-	0.19	11.9	0.5	8.3	6.6	0.3	3.0	2	1	0	2	2	2	0	AAA	domain
Glyco_hydro_15	PF00723.21	gi|227827349|ref|YP_002829128.1|	-	5.7e-07	28.7	3.0	2.8e-05	23.1	0.1	2.8	1	1	1	3	3	3	2	Glycosyl	hydrolases	family	15
MFS_1	PF07690.16	gi|227827350|ref|YP_002829129.1|	-	6.1e-59	199.7	57.5	3.3e-57	194.0	49.3	2.1	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227827350|ref|YP_002829129.1|	-	4.1e-07	29.2	15.9	4.1e-07	29.2	15.9	2.9	2	2	1	3	3	3	2	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|227827350|ref|YP_002829129.1|	-	1.2	7.4	23.7	0.0084	14.5	8.6	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
HEPN	PF05168.14	gi|227827351|ref|YP_002829130.1|	-	3.3e-23	82.0	0.2	4e-23	81.8	0.2	1.0	1	0	0	1	1	1	1	HEPN	domain
NTP_transf_2	PF01909.23	gi|227827352|ref|YP_002829131.1|	-	2.6e-10	40.4	0.4	5.6e-10	39.4	0.4	1.7	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227827352|ref|YP_002829131.1|	-	5.3e-08	32.8	1.0	8.8e-08	32.1	0.5	1.7	1	1	1	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
Deltameth_res	PF16020.5	gi|227827352|ref|YP_002829131.1|	-	0.11	12.4	0.5	3.1	7.8	0.1	2.6	2	1	1	3	3	3	0	Deltamethrin	resistance
HAD_2	PF13419.6	gi|227827353|ref|YP_002829132.1|	-	3.7e-12	46.7	0.1	2.8e-11	43.8	0.1	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|227827353|ref|YP_002829132.1|	-	0.00013	22.3	0.0	0.0077	16.5	0.0	2.1	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|227827353|ref|YP_002829132.1|	-	0.0002	21.3	0.0	0.00041	20.3	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
DUF5039	PF16442.5	gi|227827353|ref|YP_002829132.1|	-	0.0019	17.8	0.2	0.0045	16.6	0.1	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5039)
DUF1825	PF08855.10	gi|227827353|ref|YP_002829132.1|	-	0.1	12.5	0.1	0.7	9.8	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1825)
Put_Phosphatase	PF06888.12	gi|227827353|ref|YP_002829132.1|	-	0.18	11.2	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	Putative	Phosphatase
NTP_transf_2	PF01909.23	gi|227827354|ref|YP_002829133.1|	-	9.5e-09	35.4	0.2	1.9e-08	34.5	0.1	1.6	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227827354|ref|YP_002829133.1|	-	5.1e-08	32.9	0.1	1.1e-07	31.9	0.0	1.7	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|227827354|ref|YP_002829133.1|	-	0.15	11.8	0.0	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.14	gi|227827355|ref|YP_002829134.1|	-	7.6e-26	90.6	0.4	8.3e-26	90.4	0.4	1.0	1	0	0	1	1	1	1	HEPN	domain
Lactamase_B	PF00753.27	gi|227827356|ref|YP_002829135.1|	-	1.6e-25	90.3	0.0	1.8e-25	90.1	0.0	1.0	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227827356|ref|YP_002829135.1|	-	5.6e-05	22.7	0.0	6.8e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|227827356|ref|YP_002829135.1|	-	0.033	13.6	0.0	0.061	12.8	0.0	1.4	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
Acyl-CoA_dh_1	PF00441.24	gi|227827357|ref|YP_002829136.1|	-	6.1e-09	36.2	0.0	4.5e-08	33.4	0.0	2.0	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|227827357|ref|YP_002829136.1|	-	0.015	15.6	0.0	0.022	15.0	0.0	1.2	1	0	0	1	1	1	0	Acyl-CoA	dehydrogenase,	C-terminal	domain
AAA_14	PF13173.6	gi|227827358|ref|YP_002829137.1|	-	4.3e-31	107.6	2.7	5.4e-31	107.3	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
DUF4143	PF13635.6	gi|227827358|ref|YP_002829137.1|	-	1.3e-10	41.5	0.0	3.4e-10	40.1	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
ATPase_2	PF01637.18	gi|227827358|ref|YP_002829137.1|	-	1.7e-06	28.1	10.1	0.0034	17.3	0.1	3.5	2	1	1	3	3	3	2	ATPase	domain	predominantly	from	Archaea
MMR_HSR1	PF01926.23	gi|227827358|ref|YP_002829137.1|	-	0.00076	19.6	0.5	0.0031	17.6	0.0	2.2	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|227827358|ref|YP_002829137.1|	-	0.0099	15.6	0.1	0.02	14.6	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|227827358|ref|YP_002829137.1|	-	0.011	14.8	0.0	0.018	14.1	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_22	PF13401.6	gi|227827358|ref|YP_002829137.1|	-	0.018	15.3	0.0	1.1	9.5	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|227827358|ref|YP_002829137.1|	-	0.078	13.0	0.0	0.18	11.8	0.0	1.7	1	0	0	1	1	1	0	Dynamin	family
AAA_18	PF13238.6	gi|227827358|ref|YP_002829137.1|	-	0.1	13.2	0.8	1.9	9.1	0.1	2.7	1	1	1	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|227827358|ref|YP_002829137.1|	-	0.16	11.7	0.1	0.57	10.0	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.6	gi|227827358|ref|YP_002829137.1|	-	0.2	12.0	0.0	2.8	8.3	0.0	2.4	1	1	0	1	1	1	0	AAA	domain
MaoC_dehydratas	PF01575.19	gi|227827359|ref|YP_002829138.1|	-	8.9e-19	67.3	0.0	1.1e-18	66.9	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|227827359|ref|YP_002829138.1|	-	1.5e-08	34.8	0.0	2.2e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
S1	PF00575.23	gi|227827359|ref|YP_002829138.1|	-	0.028	14.8	0.1	0.047	14.0	0.1	1.5	1	0	0	1	1	1	0	S1	RNA	binding	domain
Acyl-CoA_dh_N	PF02771.16	gi|227827360|ref|YP_002829139.1|	-	1.4e-29	103.0	0.0	2.6e-29	102.2	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227827360|ref|YP_002829139.1|	-	6.6e-20	71.1	0.0	1.1e-19	70.4	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_1	PF00441.24	gi|227827360|ref|YP_002829139.1|	-	5.4e-15	55.9	0.8	8.5e-09	35.8	0.2	2.2	1	1	1	2	2	2	2	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_ox_N	PF14749.6	gi|227827360|ref|YP_002829139.1|	-	0.00095	19.7	0.0	0.0027	18.3	0.0	1.8	2	0	0	2	2	2	1	Acyl-coenzyme	A	oxidase	N-terminal
PmbA_TldD	PF01523.16	gi|227827361|ref|YP_002829140.1|	-	1e-29	104.3	0.0	1.4e-29	103.9	0.0	1.3	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|227827362|ref|YP_002829141.1|	-	1.3e-39	136.8	0.6	1.8e-39	136.3	0.6	1.3	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
HTH_AsnC-type	PF13404.6	gi|227827363|ref|YP_002829142.1|	-	0.075	12.9	0.0	0.31	10.9	0.0	2.0	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Glyco_hydro_10	PF00331.20	gi|227827363|ref|YP_002829142.1|	-	0.15	11.2	0.2	0.22	10.7	0.2	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	10
PSII_BNR	PF14870.6	gi|227827364|ref|YP_002829143.1|	-	0.027	13.7	0.0	0.043	13.1	0.0	1.3	1	0	0	1	1	1	0	Photosynthesis	system	II	assembly	factor	YCF48
BNR	PF02012.20	gi|227827364|ref|YP_002829143.1|	-	0.05	13.6	0.1	0.16	12.1	0.1	1.9	1	0	0	1	1	1	0	BNR/Asp-box	repeat
Sortilin-Vps10	PF15902.5	gi|227827364|ref|YP_002829143.1|	-	0.13	11.0	0.0	3.1	6.5	0.0	2.1	2	0	0	2	2	2	0	Sortilin,	neurotensin	receptor	3,
Polyketide_cyc2	PF10604.9	gi|227827365|ref|YP_002829144.1|	-	0.0037	17.5	0.0	0.0043	17.3	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF3236	PF11576.8	gi|227827365|ref|YP_002829144.1|	-	0.037	13.8	0.0	0.048	13.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3236)
Amidinotransf	PF02274.17	gi|227827366|ref|YP_002829145.1|	-	1.9e-85	287.0	0.0	2.2e-85	286.8	0.0	1.0	1	0	0	1	1	1	1	Amidinotransferase
PAD_porph	PF04371.15	gi|227827366|ref|YP_002829145.1|	-	0.033	13.5	0.0	0.052	12.8	0.0	1.4	1	0	0	1	1	1	0	Porphyromonas-type	peptidyl-arginine	deiminase
MFS_1	PF07690.16	gi|227827367|ref|YP_002829146.1|	-	6.4e-29	101.0	34.9	7.2e-18	64.6	18.3	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227827367|ref|YP_002829146.1|	-	1.2e-17	63.9	30.1	2.5e-16	59.6	14.0	2.9	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_4	PF06779.14	gi|227827367|ref|YP_002829146.1|	-	5.3e-06	26.0	1.4	1e-05	25.0	1.4	1.5	1	0	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
MFS_5	PF05631.14	gi|227827367|ref|YP_002829146.1|	-	0.00018	20.6	18.1	0.00066	18.7	6.1	2.1	2	0	0	2	2	2	2	Sugar-tranasporters,	12	TM
MFS_3	PF05977.13	gi|227827367|ref|YP_002829146.1|	-	0.11	10.9	15.2	0.17	10.2	0.8	2.7	2	1	1	3	3	3	0	Transmembrane	secretion	effector
PALP	PF00291.25	gi|227827368|ref|YP_002829147.1|	-	3.3e-39	135.1	0.0	3.9e-39	134.8	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ABC_tran	PF00005.27	gi|227827369|ref|YP_002829148.1|	-	9.3e-33	113.6	0.0	1.5e-32	113.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227827369|ref|YP_002829148.1|	-	2.9e-14	53.6	0.0	1.3e-09	38.3	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227827369|ref|YP_002829148.1|	-	5.4e-06	26.0	0.0	0.037	13.5	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|227827369|ref|YP_002829148.1|	-	1.2e-05	25.2	0.3	0.063	13.0	0.0	2.9	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|227827369|ref|YP_002829148.1|	-	0.00015	22.2	0.0	0.00024	21.5	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|227827369|ref|YP_002829148.1|	-	0.00046	20.1	0.0	0.00099	19.0	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
NB-ARC	PF00931.22	gi|227827369|ref|YP_002829148.1|	-	0.00073	18.8	0.8	0.008	15.4	0.1	2.2	2	1	0	2	2	2	1	NB-ARC	domain
IstB_IS21	PF01695.17	gi|227827369|ref|YP_002829148.1|	-	0.00098	18.9	0.1	1.1	8.9	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_14	PF13173.6	gi|227827369|ref|YP_002829148.1|	-	0.0013	18.7	0.0	0.0056	16.7	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227827369|ref|YP_002829148.1|	-	0.0019	17.9	0.0	0.0034	17.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
TsaE	PF02367.17	gi|227827369|ref|YP_002829148.1|	-	0.0022	18.0	0.0	0.005	16.8	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA	PF00004.29	gi|227827369|ref|YP_002829148.1|	-	0.0033	17.8	0.3	0.0095	16.4	0.3	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|227827369|ref|YP_002829148.1|	-	0.0042	17.3	1.1	0.044	14.1	1.1	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|227827369|ref|YP_002829148.1|	-	0.0051	17.3	0.9	0.01	16.4	0.9	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|227827369|ref|YP_002829148.1|	-	0.0063	16.2	0.0	0.012	15.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|227827369|ref|YP_002829148.1|	-	0.0084	16.3	0.1	0.015	15.4	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
DUF4162	PF13732.6	gi|227827369|ref|YP_002829148.1|	-	0.01	16.5	0.1	0.035	14.8	0.1	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
NACHT	PF05729.12	gi|227827369|ref|YP_002829148.1|	-	0.02	14.8	0.2	0.044	13.7	0.1	1.6	2	0	0	2	2	2	0	NACHT	domain
RNA_helicase	PF00910.22	gi|227827369|ref|YP_002829148.1|	-	0.037	14.4	0.0	0.25	11.7	0.0	2.2	2	0	0	2	2	2	0	RNA	helicase
Roc	PF08477.13	gi|227827369|ref|YP_002829148.1|	-	0.041	14.1	0.0	0.16	12.2	0.0	1.9	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NTPase_1	PF03266.15	gi|227827369|ref|YP_002829148.1|	-	0.043	13.7	1.0	0.22	11.4	0.2	2.3	2	1	0	2	2	2	0	NTPase
AAA_25	PF13481.6	gi|227827369|ref|YP_002829148.1|	-	0.044	13.4	0.0	0.17	11.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|227827369|ref|YP_002829148.1|	-	0.046	13.7	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_27	PF13514.6	gi|227827369|ref|YP_002829148.1|	-	0.057	13.0	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Spa1_C	PF18218.1	gi|227827369|ref|YP_002829148.1|	-	0.062	13.7	0.1	0.16	12.4	0.1	1.7	1	0	0	1	1	1	0	Lantibiotic	immunity	protein	Spa1	C-terminal	domain
PPK2	PF03976.14	gi|227827369|ref|YP_002829148.1|	-	0.068	12.7	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
AAA_5	PF07728.14	gi|227827369|ref|YP_002829148.1|	-	0.076	13.0	0.2	0.32	11.0	0.0	2.0	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_7	PF12775.7	gi|227827369|ref|YP_002829148.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_19	PF13245.6	gi|227827369|ref|YP_002829148.1|	-	0.15	12.4	0.4	0.25	11.7	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|227827369|ref|YP_002829148.1|	-	0.19	12.0	0.0	0.74	10.1	0.0	2.1	2	1	0	2	2	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_18	PF13238.6	gi|227827369|ref|YP_002829148.1|	-	2.3	8.8	4.8	2	9.0	0.1	2.7	2	1	1	3	3	3	0	AAA	domain
ABC2_membrane	PF01061.24	gi|227827370|ref|YP_002829149.1|	-	4.7e-12	45.8	35.1	4.7e-12	45.8	35.1	1.7	1	1	1	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|227827370|ref|YP_002829149.1|	-	1.2e-05	24.6	38.1	1.2e-05	24.6	38.1	2.0	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ATP-synt_J	PF04911.12	gi|227827370|ref|YP_002829149.1|	-	0.023	14.2	0.0	0.056	13.0	0.0	1.6	1	0	0	1	1	1	0	ATP	synthase	j	chain
MFS_1	PF07690.16	gi|227827371|ref|YP_002829150.1|	-	1.2e-32	113.2	38.7	1.2e-32	113.2	38.7	1.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Pro-kuma_activ	PF09286.11	gi|227827372|ref|YP_002829151.1|	-	2.6e-25	89.4	0.1	6e-25	88.2	0.1	1.6	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
Big_7	PF17957.1	gi|227827372|ref|YP_002829151.1|	-	2.3e-05	25.1	7.1	2.3e-05	25.1	7.1	4.8	5	0	0	5	5	5	1	Bacterial	Ig	domain
Peptidase_S8	PF00082.22	gi|227827372|ref|YP_002829151.1|	-	5.6e-05	22.5	1.4	5.6e-05	22.5	1.4	1.9	2	0	0	2	2	2	1	Subtilase	family
TcfC	PF16967.5	gi|227827372|ref|YP_002829151.1|	-	0.0006	19.3	1.2	0.0006	19.3	1.2	3.5	3	0	0	3	3	3	1	E-set	like	domain
LRR_3	PF07725.12	gi|227827372|ref|YP_002829151.1|	-	0.026	14.4	0.0	0.06	13.2	0.0	1.7	1	0	0	1	1	1	0	Leucine	Rich	Repeat
MG2	PF01835.19	gi|227827372|ref|YP_002829151.1|	-	0.095	13.2	0.0	0.99	9.9	0.0	2.7	3	0	0	3	3	3	0	MG2	domain
MFS_1	PF07690.16	gi|227827373|ref|YP_002829152.1|	-	1.4e-26	93.3	44.0	1.1e-16	60.8	35.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1240	PF06836.12	gi|227827373|ref|YP_002829152.1|	-	0.56	10.8	6.2	5.9	7.5	1.6	3.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1240)
Na_H_Exchanger	PF00999.21	gi|227827374|ref|YP_002829153.1|	-	4.9e-47	160.5	44.8	6e-47	160.2	44.8	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
UPF0139	PF03669.13	gi|227827374|ref|YP_002829153.1|	-	0.11	12.3	0.0	0.39	10.6	0.0	2.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0139)
Cytochrome-c551	PF10643.9	gi|227827374|ref|YP_002829153.1|	-	0.14	11.7	4.3	0.34	10.5	4.3	1.6	1	0	0	1	1	1	0	Photosystem	P840	reaction-centre	cytochrome	c-551
Vma12	PF11712.8	gi|227827374|ref|YP_002829153.1|	-	6.9	6.7	6.6	0.68	10.0	0.3	2.5	3	0	0	3	3	3	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
WYL_2	PF10902.8	gi|227827375|ref|YP_002829154.1|	-	0.065	13.6	0.1	0.19	12.1	0.0	1.9	2	0	0	2	2	2	0	WYL_2,	Sm-like	SH3	beta-barrel	fold
Amidohydro_2	PF04909.14	gi|227827376|ref|YP_002829155.1|	-	0.0033	17.3	0.0	1.5	8.5	0.0	2.1	1	1	1	2	2	2	2	Amidohydrolase
DUF4918	PF16265.5	gi|227827376|ref|YP_002829155.1|	-	0.044	13.3	0.0	0.064	12.8	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4918)
Glutaredoxin	PF00462.24	gi|227827376|ref|YP_002829155.1|	-	0.076	13.2	0.0	0.17	12.2	0.0	1.6	1	0	0	1	1	1	0	Glutaredoxin
CCG	PF02754.16	gi|227827377|ref|YP_002829156.1|	-	1.9e-30	104.9	0.2	2.3e-16	59.8	0.0	2.6	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_8	PF13183.6	gi|227827378|ref|YP_002829157.1|	-	7.3e-09	36.0	7.1	1.2e-08	35.2	7.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227827378|ref|YP_002829157.1|	-	7.9e-09	35.6	9.5	2.9e-08	33.8	10.0	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227827378|ref|YP_002829157.1|	-	1e-07	32.4	3.9	1.7e-07	31.6	3.9	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227827378|ref|YP_002829157.1|	-	1.5e-06	28.7	6.7	2.5e-06	28.0	6.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227827378|ref|YP_002829157.1|	-	0.0036	17.4	11.1	0.024	14.8	11.7	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227827378|ref|YP_002829157.1|	-	0.017	16.1	12.2	0.033	15.1	3.2	2.2	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_22	PF17179.4	gi|227827378|ref|YP_002829157.1|	-	0.024	15.5	4.9	0.84	10.5	0.4	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227827378|ref|YP_002829157.1|	-	0.031	14.8	13.6	0.46	11.1	3.5	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227827378|ref|YP_002829157.1|	-	0.12	12.5	10.0	0.7	10.1	10.0	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|227827378|ref|YP_002829157.1|	-	0.16	11.7	7.4	0.097	12.4	0.7	2.2	1	1	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4	PF00037.27	gi|227827378|ref|YP_002829157.1|	-	0.16	11.8	12.7	0.28	11.1	2.1	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227827378|ref|YP_002829157.1|	-	0.26	11.5	13.6	0.17	12.1	1.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227827378|ref|YP_002829157.1|	-	6.1	7.1	8.3	1.4	9.1	1.0	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|227827378|ref|YP_002829157.1|	-	8.3	7.0	8.3	13	6.5	2.5	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Pyr_redox_2	PF07992.14	gi|227827380|ref|YP_002829159.1|	-	1.5e-16	60.5	0.2	3.3e-16	59.4	0.2	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|227827380|ref|YP_002829159.1|	-	1.7e-08	33.6	1.2	0.00057	18.7	0.3	2.1	1	1	1	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|227827380|ref|YP_002829159.1|	-	8.3e-08	31.7	0.7	5.2e-06	25.8	0.3	2.1	1	1	1	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|227827380|ref|YP_002829159.1|	-	1.3e-07	31.2	0.9	1.3e-06	28.0	0.5	2.1	1	1	1	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|227827380|ref|YP_002829159.1|	-	3.6e-07	29.6	0.1	0.00017	20.8	0.1	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|227827380|ref|YP_002829159.1|	-	9.2e-07	28.6	0.6	1.8e-06	27.6	0.5	1.7	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227827380|ref|YP_002829159.1|	-	1.5e-05	24.4	1.5	5e-05	22.7	1.5	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|227827380|ref|YP_002829159.1|	-	6.7e-05	23.0	0.0	0.00016	21.8	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|227827380|ref|YP_002829159.1|	-	7.4e-05	22.1	0.2	0.00013	21.3	0.2	1.5	1	1	0	1	1	1	1	Thi4	family
Pyr_redox	PF00070.27	gi|227827380|ref|YP_002829159.1|	-	0.0001	22.8	1.6	0.011	16.2	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|227827380|ref|YP_002829159.1|	-	0.00018	21.5	0.2	0.3	11.1	0.0	3.0	3	0	0	3	3	3	2	FAD-NAD(P)-binding
Amino_oxidase	PF01593.24	gi|227827380|ref|YP_002829159.1|	-	0.0002	20.8	0.1	0.085	12.1	0.0	2.9	3	0	0	3	3	3	1	Flavin	containing	amine	oxidoreductase
DAO	PF01266.24	gi|227827380|ref|YP_002829159.1|	-	0.00023	20.9	2.2	0.0034	17.0	0.1	2.6	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|227827380|ref|YP_002829159.1|	-	0.0023	17.0	0.3	0.0045	16.1	0.2	1.4	1	1	0	1	1	1	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|227827380|ref|YP_002829159.1|	-	0.0097	15.2	0.2	0.022	14.0	0.2	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.6	gi|227827380|ref|YP_002829159.1|	-	0.037	14.5	0.1	0.11	13.0	0.1	1.8	1	1	0	1	1	1	0	Putative	NAD(P)-binding
IlvN	PF07991.12	gi|227827380|ref|YP_002829159.1|	-	0.049	13.2	0.2	0.11	12.1	0.2	1.7	1	1	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
K_oxygenase	PF13434.6	gi|227827380|ref|YP_002829159.1|	-	0.12	11.5	0.3	0.94	8.5	0.0	2.2	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
CCG	PF02754.16	gi|227827381|ref|YP_002829160.1|	-	5e-08	33.1	0.0	4.2e-06	26.9	0.0	3.0	2	1	0	2	2	2	2	Cysteine-rich	domain
Fer4_17	PF13534.6	gi|227827382|ref|YP_002829161.1|	-	1.1e-07	32.2	6.8	2.3e-07	31.2	6.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227827382|ref|YP_002829161.1|	-	2e-07	31.4	6.6	9.2e-07	29.2	7.1	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227827382|ref|YP_002829161.1|	-	4.7e-07	29.8	6.1	9.1e-07	28.9	6.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227827382|ref|YP_002829161.1|	-	2.3e-06	27.7	8.5	1.1e-05	25.5	9.2	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227827382|ref|YP_002829161.1|	-	1.5e-05	25.5	8.9	3.8e-05	24.2	9.2	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227827382|ref|YP_002829161.1|	-	0.00036	20.4	11.3	0.01	15.9	2.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|227827382|ref|YP_002829161.1|	-	0.00076	20.4	8.1	0.0024	18.7	8.1	1.9	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|227827382|ref|YP_002829161.1|	-	0.003	17.9	10.9	0.0039	17.6	1.0	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Ca_bind_SSO6904	PF18249.1	gi|227827382|ref|YP_002829161.1|	-	0.061	13.7	0.2	0.53	10.7	0.1	2.2	2	0	0	2	2	2	0	Calcium	binding	protein	SSO6904
Fer4_21	PF14697.6	gi|227827382|ref|YP_002829161.1|	-	0.075	13.2	9.6	0.81	9.9	9.9	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|227827382|ref|YP_002829161.1|	-	0.14	11.9	6.8	0.17	11.7	0.4	2.3	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_6	PF12837.7	gi|227827382|ref|YP_002829161.1|	-	0.17	12.0	12.9	1.1	9.5	2.1	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|227827382|ref|YP_002829161.1|	-	0.37	10.7	16.9	0.17	11.8	2.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|227827382|ref|YP_002829161.1|	-	6.3	7.7	12.1	2	9.3	1.3	2.4	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
TusA	PF01206.17	gi|227827383|ref|YP_002829162.1|	-	4.2e-21	74.5	0.0	4.6e-21	74.4	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE_2	PF13686.6	gi|227827384|ref|YP_002829163.1|	-	2.2e-28	99.1	0.9	4.4e-27	94.9	0.9	1.9	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|227827384|ref|YP_002829163.1|	-	2.2e-09	37.7	0.0	5.8e-09	36.3	0.0	1.7	1	1	0	1	1	1	1	DsrE/DsrF-like	family
SinI	PF08671.10	gi|227827384|ref|YP_002829163.1|	-	0.13	12.1	0.1	0.26	11.1	0.1	1.4	1	0	0	1	1	1	0	Anti-repressor	SinI
DrsE	PF02635.15	gi|227827385|ref|YP_002829164.1|	-	3.5e-23	82.2	0.0	4.1e-23	82.0	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.6	gi|227827385|ref|YP_002829164.1|	-	5.3e-15	55.6	1.1	9.6e-07	28.8	0.0	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
Pyr_redox_2	PF07992.14	gi|227827386|ref|YP_002829165.1|	-	1.2e-50	172.4	0.9	1.6e-50	172.0	0.9	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227827386|ref|YP_002829165.1|	-	2.7e-20	72.7	5.2	2.9e-15	56.6	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|227827386|ref|YP_002829165.1|	-	8.7e-15	54.9	0.0	1.6e-14	54.1	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|227827386|ref|YP_002829165.1|	-	1.3e-13	50.9	3.4	9e-10	38.3	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227827386|ref|YP_002829165.1|	-	8.5e-11	41.5	4.5	7.9e-06	25.2	0.2	3.0	3	1	0	3	3	3	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|227827386|ref|YP_002829165.1|	-	9.8e-09	34.4	2.7	0.00032	19.5	0.9	3.8	4	0	0	4	4	4	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|227827386|ref|YP_002829165.1|	-	3.5e-08	33.2	3.1	5.7e-06	25.9	0.4	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|227827386|ref|YP_002829165.1|	-	1.4e-07	31.1	1.2	6.7e-05	22.3	0.2	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|227827386|ref|YP_002829165.1|	-	1.4e-07	30.8	1.3	4.7e-06	25.7	0.3	2.2	2	0	0	2	2	2	1	Tryptophan	halogenase
FAD_binding_2	PF00890.24	gi|227827386|ref|YP_002829165.1|	-	3.1e-07	29.8	9.1	1.5e-06	27.5	1.5	3.2	3	1	1	4	4	4	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|227827386|ref|YP_002829165.1|	-	2.9e-06	26.7	0.9	0.011	15.0	0.0	2.3	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.6	gi|227827386|ref|YP_002829165.1|	-	4e-06	27.0	5.3	0.001	19.3	0.7	2.3	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|227827386|ref|YP_002829165.1|	-	6.7e-06	25.9	10.5	0.021	14.4	2.3	3.5	4	0	0	4	4	4	3	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|227827386|ref|YP_002829165.1|	-	0.00017	20.9	6.8	0.00054	19.3	0.4	3.1	3	1	1	4	4	4	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|227827386|ref|YP_002829165.1|	-	0.00022	20.4	0.4	0.15	11.0	0.0	2.2	2	0	0	2	2	2	2	Lycopene	cyclase	protein
K_oxygenase	PF13434.6	gi|227827386|ref|YP_002829165.1|	-	0.00054	19.2	1.0	0.039	13.1	0.0	2.7	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_7	PF13241.6	gi|227827386|ref|YP_002829165.1|	-	0.00069	20.0	0.2	1.3	9.5	0.0	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|227827386|ref|YP_002829165.1|	-	0.0037	17.2	1.3	0.56	10.1	0.0	2.2	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|227827386|ref|YP_002829165.1|	-	0.0041	16.7	4.0	0.33	10.5	0.6	2.6	2	0	0	2	2	2	2	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|227827386|ref|YP_002829165.1|	-	0.019	14.9	0.2	5.2	7.0	0.0	2.6	3	0	0	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
GDI	PF00996.18	gi|227827386|ref|YP_002829165.1|	-	0.032	12.8	0.2	0.046	12.2	0.2	1.2	1	0	0	1	1	1	0	GDP	dissociation	inhibitor
TrkA_N	PF02254.18	gi|227827386|ref|YP_002829165.1|	-	0.053	13.8	2.1	0.8	10.0	0.7	2.5	2	0	0	2	2	2	0	TrkA-N	domain
Thioredoxin_3	PF13192.6	gi|227827388|ref|YP_002829167.1|	-	4.5e-13	49.0	0.1	7.7e-13	48.3	0.1	1.4	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin	PF00085.20	gi|227827388|ref|YP_002829167.1|	-	0.003	17.5	0.2	0.0069	16.4	0.0	1.7	2	0	0	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|227827388|ref|YP_002829167.1|	-	0.0049	17.1	0.4	0.012	15.8	0.4	1.7	1	0	0	1	1	1	1	Glutaredoxin
Thioredoxin_9	PF14595.6	gi|227827388|ref|YP_002829167.1|	-	0.0081	15.9	0.1	0.012	15.3	0.1	1.2	1	0	0	1	1	1	1	Thioredoxin
DUF836	PF05768.14	gi|227827388|ref|YP_002829167.1|	-	0.011	16.1	0.4	0.19	12.2	0.1	2.1	2	0	0	2	2	2	0	Glutaredoxin-like	domain	(DUF836)
Csd3_N	PF18059.1	gi|227827388|ref|YP_002829167.1|	-	0.025	15.1	0.1	0.055	14.0	0.1	1.6	1	0	0	1	1	1	0	Csd3	N-terminal
Thioredoxin_2	PF13098.6	gi|227827388|ref|YP_002829167.1|	-	0.054	13.9	0.4	0.11	12.9	0.4	1.8	1	1	0	1	1	1	0	Thioredoxin-like	domain
PIN_5	PF08745.11	gi|227827389|ref|YP_002829168.1|	-	0.0023	17.4	0.3	0.0051	16.3	0.3	1.5	2	0	0	2	2	2	1	PINc	domain	ribonuclease
Gar1	PF04410.14	gi|227827389|ref|YP_002829168.1|	-	0.025	14.4	0.1	4.6	7.0	0.0	2.2	1	1	1	2	2	2	0	Gar1/Naf1	RNA	binding	region
Lipase_3	PF01764.25	gi|227827389|ref|YP_002829168.1|	-	0.12	12.2	0.0	0.15	11.9	0.0	1.1	1	0	0	1	1	1	0	Lipase	(class	3)
DUF1641	PF07849.11	gi|227827390|ref|YP_002829169.1|	-	9.9e-12	44.5	1.2	2.7e-11	43.1	0.1	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1641)
MgtE_N	PF03448.17	gi|227827390|ref|YP_002829169.1|	-	3.6e-05	24.3	31.7	0.019	15.6	2.6	6.0	3	2	1	4	4	4	2	MgtE	intracellular	N	domain
HSR	PF03172.13	gi|227827390|ref|YP_002829169.1|	-	0.02	15.0	1.6	33	4.7	0.1	4.1	3	2	0	3	3	3	0	HSR	domain
DUF848	PF05852.11	gi|227827390|ref|YP_002829169.1|	-	0.082	13.0	8.1	1.3	9.1	0.1	3.8	3	1	1	4	4	4	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DUF3847	PF12958.7	gi|227827390|ref|YP_002829169.1|	-	0.47	10.6	8.2	27	5.0	0.0	5.4	4	2	3	7	7	7	0	Protein	of	unknown	function	(DUF3847)
RNase_3_N	PF18497.1	gi|227827390|ref|YP_002829169.1|	-	0.49	10.6	5.8	4.1	7.7	0.6	4.1	2	2	2	4	4	4	0	Ribonuclease	III	N-terminal	domain
Birna_VP3	PF01767.16	gi|227827390|ref|YP_002829169.1|	-	1	9.4	3.0	15	5.6	0.3	3.1	2	1	2	4	4	4	0	Birnavirus	VP3	protein
RSN1_7TM	PF02714.15	gi|227827390|ref|YP_002829169.1|	-	2.7	7.2	8.5	6.8	5.9	0.2	3.7	3	1	1	4	4	4	0	Calcium-dependent	channel,	7TM	region,	putative	phosphate
Hist_deacetyl	PF00850.19	gi|227827391|ref|YP_002829170.1|	-	1e-54	186.1	0.0	1.6e-54	185.5	0.0	1.2	1	0	0	1	1	1	1	Histone	deacetylase	domain
Peptidase_M23	PF01551.22	gi|227827392|ref|YP_002829171.1|	-	1.3e-05	25.4	0.0	6.9e-05	23.0	0.0	2.0	2	0	0	2	2	2	1	Peptidase	family	M23
RnfC_N	PF13375.6	gi|227827392|ref|YP_002829171.1|	-	0.18	11.8	0.0	2	8.4	0.0	2.2	2	0	0	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
Radical_SAM	PF04055.21	gi|227827393|ref|YP_002829172.1|	-	3.8e-12	46.9	0.4	3.6e-11	43.7	0.1	2.2	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227827393|ref|YP_002829172.1|	-	0.0017	18.6	0.0	0.0033	17.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
LppA	PF16708.5	gi|227827393|ref|YP_002829172.1|	-	0.19	11.6	0.0	0.4	10.6	0.0	1.4	1	0	0	1	1	1	0	Lipoprotein	confined	to	pathogenic	Mycobacterium
Radical_SAM	PF04055.21	gi|227827394|ref|YP_002829173.1|	-	1.3e-14	54.9	0.0	7.4e-13	49.2	0.0	2.2	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227827394|ref|YP_002829173.1|	-	0.0049	17.1	0.0	0.0072	16.6	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|227827394|ref|YP_002829173.1|	-	0.016	15.3	0.0	0.031	14.4	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Cas_csx3	PF09620.10	gi|227827394|ref|YP_002829173.1|	-	0.052	13.4	0.0	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_csx3)
BPL_LplA_LipB	PF03099.19	gi|227827395|ref|YP_002829174.1|	-	3.7e-06	26.9	0.0	7.1e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Lip_prot_lig_C	PF10437.9	gi|227827395|ref|YP_002829174.1|	-	2.4e-05	24.2	0.1	7.2e-05	22.7	0.1	1.8	1	0	0	1	1	1	1	Bacterial	lipoate	protein	ligase	C-terminus
CoA_binding_2	PF13380.6	gi|227827396|ref|YP_002829175.1|	-	3.2e-37	127.5	0.1	3.8e-37	127.3	0.1	1.1	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|227827396|ref|YP_002829175.1|	-	6.4e-05	23.6	0.0	0.00011	22.8	0.0	1.4	1	0	0	1	1	1	1	CoA	binding	domain
TrmB	PF01978.19	gi|227827397|ref|YP_002829176.1|	-	9.1e-10	38.3	0.0	1.2e-09	37.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|227827397|ref|YP_002829176.1|	-	7.5e-07	29.0	0.1	1.1e-06	28.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|227827397|ref|YP_002829176.1|	-	1.2e-06	28.9	0.1	1.8e-06	28.4	0.1	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|227827397|ref|YP_002829176.1|	-	4.8e-06	26.4	0.1	7.8e-06	25.7	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
RP-C	PF03428.13	gi|227827397|ref|YP_002829176.1|	-	8.5e-06	25.5	0.0	1.2e-05	25.1	0.0	1.5	1	1	0	1	1	1	1	Replication	protein	C	N-terminal	domain
MarR_2	PF12802.7	gi|227827397|ref|YP_002829176.1|	-	1.5e-05	24.7	0.0	2.2e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|227827397|ref|YP_002829176.1|	-	6.3e-05	22.9	0.0	7.4e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|227827397|ref|YP_002829176.1|	-	7.2e-05	22.3	0.1	0.00011	21.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|227827397|ref|YP_002829176.1|	-	9.6e-05	22.2	0.1	0.00019	21.2	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.6	gi|227827397|ref|YP_002829176.1|	-	9.9e-05	22.2	0.1	0.00014	21.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|227827397|ref|YP_002829176.1|	-	0.0001	22.3	0.0	0.00017	21.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227827397|ref|YP_002829176.1|	-	0.00014	22.0	0.1	0.00023	21.3	0.1	1.6	1	1	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.6	gi|227827397|ref|YP_002829176.1|	-	0.0003	20.5	0.2	0.00055	19.7	0.1	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
GntR	PF00392.21	gi|227827397|ref|YP_002829176.1|	-	0.00063	19.3	0.1	0.0012	18.4	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
RuvB_C	PF05491.13	gi|227827397|ref|YP_002829176.1|	-	0.00089	19.1	0.2	0.0014	18.5	0.2	1.3	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
Phage_rep_O	PF04492.13	gi|227827397|ref|YP_002829176.1|	-	0.0042	17.6	0.0	0.0083	16.7	0.0	1.5	2	0	0	2	2	1	1	Bacteriophage	replication	protein	O
HrcA_DNA-bdg	PF03444.15	gi|227827397|ref|YP_002829176.1|	-	0.0081	15.8	0.1	0.011	15.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
TFIIE_alpha	PF02002.17	gi|227827397|ref|YP_002829176.1|	-	0.0084	16.0	0.1	0.0095	15.8	0.1	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_DeoR	PF08220.12	gi|227827397|ref|YP_002829176.1|	-	0.0097	15.6	0.0	0.015	15.0	0.0	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_10	PF04967.12	gi|227827397|ref|YP_002829176.1|	-	0.016	15.0	0.4	0.033	14.0	0.1	1.6	2	0	0	2	2	1	0	HTH	DNA	binding	domain
Rio2_N	PF09202.11	gi|227827397|ref|YP_002829176.1|	-	0.017	15.3	0.0	0.024	14.9	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
Rrf2	PF02082.20	gi|227827397|ref|YP_002829176.1|	-	0.018	15.4	0.0	0.026	14.9	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
TBPIP	PF07106.13	gi|227827397|ref|YP_002829176.1|	-	0.027	14.4	0.0	0.053	13.5	0.0	1.5	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
HTH_IclR	PF09339.10	gi|227827397|ref|YP_002829176.1|	-	0.036	13.9	0.0	0.053	13.3	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Pox_Rap94	PF03294.14	gi|227827397|ref|YP_002829176.1|	-	0.041	12.0	0.0	0.045	11.9	0.0	1.0	1	0	0	1	1	1	0	RNA	polymerase-associated	transcription	specificity	factor,	Rap94
FeoC	PF09012.10	gi|227827397|ref|YP_002829176.1|	-	0.041	13.9	0.3	0.074	13.1	0.1	1.6	1	1	0	1	1	1	0	FeoC	like	transcriptional	regulator
SMC_ScpB	PF04079.16	gi|227827397|ref|YP_002829176.1|	-	0.049	13.3	0.3	0.094	12.3	0.3	1.5	1	1	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
Dimerisation2	PF16864.5	gi|227827397|ref|YP_002829176.1|	-	0.052	13.5	0.2	0.1	12.6	0.0	1.5	2	0	0	2	2	2	0	Dimerisation	domain
TusA	PF01206.17	gi|227827398|ref|YP_002829177.1|	-	1.9e-10	40.4	0.1	2.3e-10	40.2	0.1	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Polo_box_3	PF18544.1	gi|227827398|ref|YP_002829177.1|	-	0.088	13.5	0.1	0.13	12.9	0.1	1.3	1	1	0	1	1	1	0	Polo	box	domain
YHS	PF04945.13	gi|227827399|ref|YP_002829178.1|	-	9.2e-08	32.1	0.5	1.4e-07	31.5	0.5	1.3	1	1	0	1	1	1	1	YHS	domain
TrmB	PF01978.19	gi|227827400|ref|YP_002829179.1|	-	4.3e-16	58.6	0.0	5.7e-16	58.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|227827400|ref|YP_002829179.1|	-	1.4e-10	40.9	0.0	1.8e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|227827400|ref|YP_002829179.1|	-	1.7e-10	40.7	0.0	2.3e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|227827400|ref|YP_002829179.1|	-	4.3e-08	32.6	0.0	5.9e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|227827400|ref|YP_002829179.1|	-	1.1e-05	25.2	0.0	1.4e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|227827400|ref|YP_002829179.1|	-	3.6e-05	24.2	0.0	5.3e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|227827400|ref|YP_002829179.1|	-	0.00016	21.5	0.0	0.00026	20.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|227827400|ref|YP_002829179.1|	-	0.00055	19.7	0.0	0.00078	19.2	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227827400|ref|YP_002829179.1|	-	0.00085	19.5	0.0	0.0014	18.8	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|227827400|ref|YP_002829179.1|	-	0.00098	19.0	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
Mga	PF05043.13	gi|227827400|ref|YP_002829179.1|	-	0.0013	19.3	0.0	0.002	18.7	0.0	1.3	1	0	0	1	1	1	1	Mga	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|227827400|ref|YP_002829179.1|	-	0.0023	17.9	0.0	0.0034	17.3	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF4423	PF14394.6	gi|227827400|ref|YP_002829179.1|	-	0.0028	17.4	0.0	0.0039	16.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_20	PF12840.7	gi|227827400|ref|YP_002829179.1|	-	0.0032	17.5	0.0	0.0047	17.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|227827400|ref|YP_002829179.1|	-	0.005	16.6	0.0	0.0075	16.1	0.0	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_9	PF08221.11	gi|227827400|ref|YP_002829179.1|	-	0.0052	16.9	0.0	0.0074	16.4	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
GntR	PF00392.21	gi|227827400|ref|YP_002829179.1|	-	0.0072	16.0	0.0	0.014	15.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.9	gi|227827400|ref|YP_002829179.1|	-	0.016	15.3	0.0	0.032	14.3	0.0	1.4	2	0	0	2	2	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_29	PF13551.6	gi|227827400|ref|YP_002829179.1|	-	0.03	14.3	0.0	0.044	13.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
Dimerisation2	PF16864.5	gi|227827400|ref|YP_002829179.1|	-	0.058	13.4	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
Replic_Relax	PF13814.6	gi|227827400|ref|YP_002829179.1|	-	0.071	13.2	0.0	0.098	12.7	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
HTH_34	PF13601.6	gi|227827400|ref|YP_002829179.1|	-	0.11	12.6	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|227827400|ref|YP_002829179.1|	-	0.13	12.2	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1627	PF07789.12	gi|227827400|ref|YP_002829179.1|	-	0.19	11.4	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1627)
GAGBD	PF16828.5	gi|227827401|ref|YP_002829180.1|	-	0.018	15.1	0.9	0.031	14.4	0.9	1.3	1	0	0	1	1	1	0	GAG-binding	domain	on	surface	antigen
Rtt102p	PF09510.10	gi|227827401|ref|YP_002829180.1|	-	0.13	12.5	0.4	0.16	12.1	0.4	1.2	1	0	0	1	1	1	0	Rtt102p-like	transcription	regulator	protein
Sulfotransfer_1	PF00685.27	gi|227827402|ref|YP_002829181.1|	-	0.13	11.7	0.0	0.14	11.6	0.0	1.1	1	0	0	1	1	1	0	Sulfotransferase	domain
GCV_H	PF01597.19	gi|227827403|ref|YP_002829182.1|	-	8.1e-29	100.0	0.3	9.5e-29	99.8	0.3	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|227827403|ref|YP_002829182.1|	-	0.049	13.5	0.1	0.073	12.9	0.1	1.3	1	0	0	1	1	1	0	Biotin-requiring	enzyme
MFS_1	PF07690.16	gi|227827405|ref|YP_002829184.1|	-	2.4e-36	125.4	48.2	2.4e-36	125.4	48.2	2.0	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Vps39_2	PF10367.9	gi|227827406|ref|YP_002829185.1|	-	0.027	14.9	1.3	0.036	14.5	1.3	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	protein	39	domain	2
TrmB	PF01978.19	gi|227827407|ref|YP_002829186.1|	-	7.1e-15	54.6	0.2	1.1e-14	54.1	0.2	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|227827407|ref|YP_002829186.1|	-	1.7e-13	50.3	0.7	2.1e-13	50.0	0.7	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR	PF01047.22	gi|227827407|ref|YP_002829186.1|	-	6.3e-11	42.0	0.1	1.1e-10	41.3	0.1	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|227827407|ref|YP_002829186.1|	-	9.5e-10	38.2	0.0	1.5e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|227827407|ref|YP_002829186.1|	-	3.1e-09	36.3	0.4	4.9e-09	35.6	0.4	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|227827407|ref|YP_002829186.1|	-	4.3e-09	36.7	0.1	7.1e-09	36.0	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|227827407|ref|YP_002829186.1|	-	2.2e-06	27.3	0.1	4.4e-06	26.4	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|227827407|ref|YP_002829186.1|	-	2.7e-06	27.4	0.1	4.5e-06	26.8	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|227827407|ref|YP_002829186.1|	-	3.5e-06	26.8	0.1	6.7e-06	25.9	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|227827407|ref|YP_002829186.1|	-	2e-05	24.7	0.0	3.4e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Penicillinase_R	PF03965.16	gi|227827407|ref|YP_002829186.1|	-	5.3e-05	23.5	0.2	7.7e-05	23.0	0.2	1.5	1	1	0	1	1	1	1	Penicillinase	repressor
GntR	PF00392.21	gi|227827407|ref|YP_002829186.1|	-	7.9e-05	22.2	0.1	0.00067	19.3	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|227827407|ref|YP_002829186.1|	-	9.5e-05	22.3	0.2	0.00015	21.6	0.2	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.6	gi|227827407|ref|YP_002829186.1|	-	0.00015	21.7	0.1	0.00029	20.7	0.1	1.5	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
RuvB_C	PF05491.13	gi|227827407|ref|YP_002829186.1|	-	0.00024	20.9	0.1	0.00043	20.1	0.1	1.4	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
HTH_Mga	PF08280.11	gi|227827407|ref|YP_002829186.1|	-	0.0005	20.0	0.3	0.0009	19.2	0.3	1.4	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF4423	PF14394.6	gi|227827407|ref|YP_002829186.1|	-	0.0021	17.8	0.2	0.0032	17.2	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_36	PF13730.6	gi|227827407|ref|YP_002829186.1|	-	0.0027	17.6	0.3	0.01	15.7	0.3	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|227827407|ref|YP_002829186.1|	-	0.003	17.6	0.1	0.0058	16.7	0.0	1.5	2	0	0	2	2	1	1	Helix-turn-helix	domain
RTP	PF02334.16	gi|227827407|ref|YP_002829186.1|	-	0.0035	18.0	0.4	0.0059	17.2	0.4	1.3	1	1	0	1	1	1	1	Replication	terminator	protein
SMC_ScpB	PF04079.16	gi|227827407|ref|YP_002829186.1|	-	0.0053	16.4	0.1	0.0077	15.9	0.1	1.3	1	1	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_9	PF08221.11	gi|227827407|ref|YP_002829186.1|	-	0.0064	16.6	0.4	0.012	15.7	0.2	1.5	2	0	0	2	2	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|227827407|ref|YP_002829186.1|	-	0.0071	16.2	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
EAP30	PF04157.16	gi|227827407|ref|YP_002829186.1|	-	0.0071	15.7	0.2	0.05	12.9	0.0	1.9	2	0	0	2	2	2	1	EAP30/Vps36	family
HxlR	PF01638.17	gi|227827407|ref|YP_002829186.1|	-	0.012	15.5	0.1	0.015	15.1	0.1	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
TBPIP	PF07106.13	gi|227827407|ref|YP_002829186.1|	-	0.015	15.3	0.4	0.036	14.0	0.3	1.7	1	1	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
B-block_TFIIIC	PF04182.12	gi|227827407|ref|YP_002829186.1|	-	0.027	14.6	0.0	0.04	14.1	0.0	1.4	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_IclR	PF09339.10	gi|227827407|ref|YP_002829186.1|	-	0.03	14.1	0.0	0.054	13.3	0.0	1.5	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|227827407|ref|YP_002829186.1|	-	0.031	14.6	0.1	0.05	14.0	0.1	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
FeoC	PF09012.10	gi|227827407|ref|YP_002829186.1|	-	0.035	14.2	0.3	0.081	13.0	0.1	1.7	2	1	0	2	2	1	0	FeoC	like	transcriptional	regulator
Cullin_Nedd8	PF10557.9	gi|227827407|ref|YP_002829186.1|	-	0.042	13.9	0.0	0.095	12.8	0.0	1.6	2	0	0	2	2	1	0	Cullin	protein	neddylation	domain
DUF2551	PF10826.8	gi|227827407|ref|YP_002829186.1|	-	0.042	14.1	0.0	0.074	13.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2551)
HTH_38	PF13936.6	gi|227827407|ref|YP_002829186.1|	-	0.047	13.5	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
KORA	PF16509.5	gi|227827407|ref|YP_002829186.1|	-	0.089	13.1	0.0	0.17	12.2	0.0	1.4	1	0	0	1	1	1	0	TrfB	plasmid	transcriptional	repressor
HTH_10	PF04967.12	gi|227827407|ref|YP_002829186.1|	-	0.094	12.5	0.0	0.4	10.5	0.0	1.9	2	0	0	2	2	2	0	HTH	DNA	binding	domain
CcdA	PF07362.12	gi|227827407|ref|YP_002829186.1|	-	0.1	13.0	0.7	0.26	11.7	0.4	1.8	1	1	1	2	2	2	0	Post-segregation	antitoxin	CcdA
DUF977	PF06163.11	gi|227827407|ref|YP_002829186.1|	-	0.12	12.3	0.0	0.21	11.5	0.0	1.3	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
Cro	PF09048.10	gi|227827407|ref|YP_002829186.1|	-	0.15	12.1	0.0	0.26	11.4	0.0	1.4	1	0	0	1	1	1	0	Cro
DNA_topoisoIV	PF00521.20	gi|227827408|ref|YP_002829187.1|	-	0.0033	16.4	2.5	0.0034	16.3	2.5	1.0	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
YuiB	PF14068.6	gi|227827409|ref|YP_002829188.1|	-	0.13	12.8	8.1	0.18	12.4	8.1	1.2	1	0	0	1	1	1	0	Putative	membrane	protein
FUN14	PF04930.15	gi|227827409|ref|YP_002829188.1|	-	0.17	12.3	12.0	2.3	8.7	12.0	2.2	1	1	0	1	1	1	0	FUN14	family
Wzy_C	PF04932.15	gi|227827409|ref|YP_002829188.1|	-	4	7.1	12.3	5.5	6.6	12.3	1.4	1	1	0	1	1	1	0	O-Antigen	ligase
PrgI	PF12666.7	gi|227827409|ref|YP_002829188.1|	-	8.8	7.1	9.4	14	6.5	9.4	1.6	1	1	0	1	1	1	0	PrgI	family	protein
DUF2258	PF10015.9	gi|227827410|ref|YP_002829189.1|	-	1.3e-26	92.6	2.2	1.3e-26	92.6	2.2	2.1	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
DivIVA	PF05103.13	gi|227827410|ref|YP_002829189.1|	-	0.00051	20.1	5.0	0.016	15.3	1.2	2.4	2	1	0	2	2	2	2	DivIVA	protein
ZapB	PF06005.12	gi|227827410|ref|YP_002829189.1|	-	0.06	13.8	1.2	0.06	13.8	1.2	2.3	3	0	0	3	3	3	0	Cell	division	protein	ZapB
UPF0449	PF15136.6	gi|227827410|ref|YP_002829189.1|	-	0.36	11.3	3.9	0.46	11.0	2.2	2.0	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Fungal_TACC	PF12709.7	gi|227827410|ref|YP_002829189.1|	-	3.1	8.3	11.1	0.79	10.2	1.7	3.0	2	1	2	4	4	4	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
bZIP_1	PF00170.21	gi|227827410|ref|YP_002829189.1|	-	3.7	7.7	9.1	0.21	11.7	2.5	2.3	3	0	0	3	3	3	0	bZIP	transcription	factor
Aconitase	PF00330.20	gi|227827412|ref|YP_002829191.1|	-	8.2e-161	536.1	0.0	1.1e-160	535.6	0.0	1.2	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|227827412|ref|YP_002829191.1|	-	9.7e-35	119.8	0.0	2.1e-34	118.7	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF402	PF04167.13	gi|227827413|ref|YP_002829192.1|	-	5.1e-14	52.2	2.3	9.9e-14	51.3	2.3	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
RNase_E_G	PF10150.9	gi|227827413|ref|YP_002829192.1|	-	0.00014	21.4	0.6	0.00035	20.1	0.0	2.0	2	1	1	3	3	3	1	Ribonuclease	E/G	family
BAF250_C	PF12031.8	gi|227827414|ref|YP_002829193.1|	-	0.064	12.6	0.1	0.09	12.1	0.1	1.2	1	0	0	1	1	1	0	SWI/SNF-like	complex	subunit	BAF250/Osa
Prophage_tail	PF06605.11	gi|227827414|ref|YP_002829193.1|	-	0.18	11.0	1.7	1.1	8.4	0.1	2.1	2	0	0	2	2	2	0	Prophage	endopeptidase	tail
ArnB_C	PF18677.1	gi|227827415|ref|YP_002829194.1|	-	9.3e-31	105.8	9.8	2.5e-30	104.4	9.8	1.8	1	0	0	1	1	1	1	Archaellum	regulatory	network	B,	C-terminal	domain
VWA	PF00092.28	gi|227827415|ref|YP_002829194.1|	-	6e-17	62.4	2.1	2.1e-16	60.7	0.1	2.4	2	1	1	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|227827415|ref|YP_002829194.1|	-	3.5e-13	50.1	0.5	3.5e-12	46.9	0.0	2.7	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|227827415|ref|YP_002829194.1|	-	2.7e-06	27.4	0.0	8.3e-06	25.8	0.0	1.8	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|227827415|ref|YP_002829194.1|	-	1.4e-05	24.6	0.0	3.4e-05	23.4	0.0	1.5	2	0	0	2	2	2	1	VWA	domain	containing	CoxE-like	protein
DUF2201	PF09967.9	gi|227827415|ref|YP_002829194.1|	-	0.0071	16.5	0.1	0.028	14.6	0.0	2.0	2	0	0	2	2	2	1	VWA-like	domain	(DUF2201)
vWA-TerF-like	PF10138.9	gi|227827415|ref|YP_002829194.1|	-	0.06	13.5	0.5	0.63	10.1	0.0	2.9	1	1	1	3	3	3	0	vWA	found	in	TerF	C	terminus
Metallophos	PF00149.28	gi|227827416|ref|YP_002829195.1|	-	4.4e-31	109.0	0.8	5.2e-31	108.7	0.8	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|227827416|ref|YP_002829195.1|	-	1.3e-06	28.7	0.0	1.7e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF4939	PF16297.5	gi|227827416|ref|YP_002829195.1|	-	0.091	12.6	0.0	0.17	11.8	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4939)
FHA	PF00498.26	gi|227827417|ref|YP_002829196.1|	-	2.4e-18	66.2	0.0	4e-18	65.5	0.0	1.3	1	0	0	1	1	1	1	FHA	domain
Yop-YscD_cpl	PF16697.5	gi|227827417|ref|YP_002829196.1|	-	2.7e-10	40.4	0.0	6.8e-10	39.1	0.0	1.6	2	0	0	2	2	2	1	Inner	membrane	component	of	T3SS,	cytoplasmic	domain
zinc_ribbon_2	PF13240.6	gi|227827417|ref|YP_002829196.1|	-	4.6e-07	29.4	3.9	7.7e-07	28.6	3.9	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|227827417|ref|YP_002829196.1|	-	7.3e-06	25.2	1.3	1.1e-05	24.6	1.3	1.3	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
DZR	PF12773.7	gi|227827417|ref|YP_002829196.1|	-	0.00051	20.0	1.6	0.0008	19.4	1.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|227827417|ref|YP_002829196.1|	-	0.0037	16.6	1.6	0.0065	15.8	1.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Vps36-NZF-N	PF16988.5	gi|227827417|ref|YP_002829196.1|	-	0.0089	15.4	2.4	0.048	13.0	2.4	2.3	1	1	0	1	1	1	1	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
TF_Zn_Ribbon	PF08271.12	gi|227827417|ref|YP_002829196.1|	-	0.13	11.8	0.4	0.26	10.8	0.4	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-tcix	PF14952.6	gi|227827417|ref|YP_002829196.1|	-	0.2	11.3	1.4	0.59	9.8	1.4	1.7	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Spore_coat_CotO	PF14153.6	gi|227827417|ref|YP_002829196.1|	-	0.22	11.4	11.0	0.33	10.9	11.0	1.2	1	0	0	1	1	1	0	Spore	coat	protein	CotO
A2L_zn_ribbon	PF08792.10	gi|227827417|ref|YP_002829196.1|	-	0.44	10.3	3.7	2.6	7.8	3.7	2.1	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Spt20	PF12090.8	gi|227827417|ref|YP_002829196.1|	-	6.6	6.3	15.2	9.9	5.7	15.2	1.2	1	0	0	1	1	1	0	Spt20	family
ArnB_C	PF18677.1	gi|227827418|ref|YP_002829197.1|	-	7.4e-26	90.1	5.1	1.4e-25	89.2	5.1	1.5	1	0	0	1	1	1	1	Archaellum	regulatory	network	B,	C-terminal	domain
VWA	PF00092.28	gi|227827418|ref|YP_002829197.1|	-	9.4e-17	61.8	0.0	4e-16	59.8	0.0	1.9	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|227827418|ref|YP_002829197.1|	-	4.7e-08	33.1	0.0	1.3e-05	25.2	0.0	3.2	2	1	1	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|227827418|ref|YP_002829197.1|	-	1.8e-07	31.7	0.1	2.5e-06	28.1	0.0	2.6	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
DNase_II	PF03265.15	gi|227827418|ref|YP_002829197.1|	-	0.03	13.6	0.1	0.046	13.0	0.1	1.3	1	0	0	1	1	1	0	Deoxyribonuclease	II
CobT_C	PF11775.8	gi|227827418|ref|YP_002829197.1|	-	0.078	12.6	0.0	0.3	10.7	0.0	1.9	2	1	1	3	3	3	0	Cobalamin	biosynthesis	protein	CobT	VWA	domain
vWA-TerF-like	PF10138.9	gi|227827418|ref|YP_002829197.1|	-	0.15	12.2	0.0	0.66	10.0	0.0	2.1	1	1	0	1	1	1	0	vWA	found	in	TerF	C	terminus
UPF0300	PF08594.10	gi|227827420|ref|YP_002829199.1|	-	0.056	12.7	0.1	0.068	12.5	0.1	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0300)
bacHORMA_1	PF18138.1	gi|227827420|ref|YP_002829199.1|	-	0.056	13.3	0.2	0.16	11.9	0.1	1.7	1	1	1	2	2	2	0	Bacterial	HORMA	domain	family	1
DUF3341	PF11821.8	gi|227827420|ref|YP_002829199.1|	-	0.15	11.7	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3341)
CoA_trans	PF01144.23	gi|227827421|ref|YP_002829200.1|	-	2.5e-34	118.6	0.0	2.9e-34	118.4	0.0	1.1	1	0	0	1	1	1	1	Coenzyme	A	transferase
CoA_trans	PF01144.23	gi|227827422|ref|YP_002829201.1|	-	2.1e-26	92.7	0.1	2.5e-26	92.5	0.1	1.0	1	0	0	1	1	1	1	Coenzyme	A	transferase
AcetylCoA_hydro	PF02550.15	gi|227827422|ref|YP_002829201.1|	-	0.079	12.9	0.1	0.41	10.6	0.0	1.9	2	0	0	2	2	2	0	Acetyl-CoA	hydrolase/transferase	N-terminal	domain
Phage_int_SAM_6	PF18644.1	gi|227827422|ref|YP_002829201.1|	-	0.081	12.9	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
MarR	PF01047.22	gi|227827423|ref|YP_002829202.1|	-	1.6e-13	50.4	0.0	2.9e-13	49.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|227827423|ref|YP_002829202.1|	-	1.2e-09	38.5	0.1	2.5e-09	37.5	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|227827423|ref|YP_002829202.1|	-	4e-09	36.2	0.0	5.7e-09	35.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|227827423|ref|YP_002829202.1|	-	1.5e-05	25.0	0.2	2.6e-05	24.3	0.2	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.16	gi|227827423|ref|YP_002829202.1|	-	1.8e-05	25.1	1.5	0.0001	22.6	1.5	2.1	1	1	0	1	1	1	1	Penicillinase	repressor
HTH_24	PF13412.6	gi|227827423|ref|YP_002829202.1|	-	2.1e-05	24.0	0.0	5.1e-05	22.7	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|227827423|ref|YP_002829202.1|	-	0.00012	21.9	0.5	0.00025	20.9	0.5	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HxlR	PF01638.17	gi|227827423|ref|YP_002829202.1|	-	0.0024	17.7	1.4	0.025	14.4	0.4	2.4	1	1	2	3	3	3	1	HxlR-like	helix-turn-helix
HTH_45	PF14947.6	gi|227827423|ref|YP_002829202.1|	-	0.0044	17.0	0.4	0.018	15.0	0.1	2.1	1	1	1	2	2	2	1	Winged	helix-turn-helix
Rrf2	PF02082.20	gi|227827423|ref|YP_002829202.1|	-	0.009	16.3	0.2	0.07	13.5	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
PadR	PF03551.14	gi|227827423|ref|YP_002829202.1|	-	0.012	15.6	0.4	0.027	14.4	0.4	1.6	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rubrerythrin	PF02915.17	gi|227827423|ref|YP_002829202.1|	-	0.028	14.8	0.4	0.14	12.6	0.1	2.2	2	1	0	2	2	2	0	Rubrerythrin
Rio2_N	PF09202.11	gi|227827423|ref|YP_002829202.1|	-	0.037	14.2	0.1	0.097	12.9	0.1	1.7	1	0	0	1	1	1	0	Rio2,	N-terminal
DUF501	PF04417.12	gi|227827423|ref|YP_002829202.1|	-	0.16	11.8	0.1	0.23	11.2	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF501)
TFIIE_alpha	PF02002.17	gi|227827423|ref|YP_002829202.1|	-	0.27	11.1	7.7	0.22	11.4	0.5	2.9	1	1	2	3	3	3	0	TFIIE	alpha	subunit
Nore1-SARAH	PF16517.5	gi|227827423|ref|YP_002829202.1|	-	4.7	7.2	9.4	1.1	9.3	0.6	3.3	2	1	2	4	4	4	0	Novel	Ras	effector	1	C-terminal	SARAH	(Sav/Rassf/Hpo)	domain
FtsX	PF02687.21	gi|227827424|ref|YP_002829203.1|	-	6.2e-13	49.0	6.5	6.2e-13	49.0	6.5	3.0	3	0	0	3	3	3	1	FtsX-like	permease	family
MacB_PCD	PF12704.7	gi|227827424|ref|YP_002829203.1|	-	6.6e-12	46.2	2.2	6.6e-12	46.2	2.2	2.0	2	1	0	2	2	2	1	MacB-like	periplasmic	core	domain
NPCBM_assoc	PF10633.9	gi|227827425|ref|YP_002829204.1|	-	4.1e-10	39.8	0.7	0.081	13.2	0.0	5.2	5	0	0	5	5	5	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
RIFIN	PF02009.16	gi|227827425|ref|YP_002829204.1|	-	0.066	13.1	3.3	0.1	12.5	3.3	1.2	1	0	0	1	1	1	0	Rifin
Rgp1	PF08737.10	gi|227827425|ref|YP_002829204.1|	-	0.31	10.2	7.0	0.38	9.9	0.7	2.4	2	0	0	2	2	2	0	Rgp1
ABC_tran	PF00005.27	gi|227827426|ref|YP_002829205.1|	-	2.1e-33	115.8	0.1	3.2e-33	115.2	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|227827426|ref|YP_002829205.1|	-	2.3e-06	27.2	1.2	1.3e-05	24.8	1.2	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|227827426|ref|YP_002829205.1|	-	6.2e-06	26.2	0.7	0.0052	16.6	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|227827426|ref|YP_002829205.1|	-	0.00027	20.6	0.1	0.00047	19.9	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|227827426|ref|YP_002829205.1|	-	0.00085	19.1	1.4	0.011	15.4	0.2	2.0	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|227827426|ref|YP_002829205.1|	-	0.0067	16.8	0.0	0.0088	16.4	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|227827426|ref|YP_002829205.1|	-	0.019	14.9	0.0	0.032	14.1	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
ATPase_2	PF01637.18	gi|227827426|ref|YP_002829205.1|	-	0.03	14.3	0.2	0.04	13.8	0.2	1.5	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|227827426|ref|YP_002829205.1|	-	0.03	14.9	0.2	0.16	12.5	0.1	1.9	1	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|227827426|ref|YP_002829205.1|	-	0.051	13.9	0.2	0.099	12.9	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|227827426|ref|YP_002829205.1|	-	0.059	13.1	0.0	0.53	10.0	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_23	PF13476.6	gi|227827426|ref|YP_002829205.1|	-	0.063	13.8	0.2	0.063	13.8	0.2	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|227827426|ref|YP_002829205.1|	-	0.074	12.6	0.0	0.2	11.2	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|227827426|ref|YP_002829205.1|	-	0.081	12.0	0.2	0.25	10.3	0.1	1.8	1	1	0	2	2	2	0	Type	II/IV	secretion	system	protein
CbiA	PF01656.23	gi|227827426|ref|YP_002829205.1|	-	0.092	12.8	0.1	0.24	11.4	0.1	1.7	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Lyase_1	PF00206.20	gi|227827427|ref|YP_002829206.1|	-	4e-110	368.1	0.2	6.8e-110	367.3	0.0	1.4	2	0	0	2	2	2	1	Lyase
FumaraseC_C	PF10415.9	gi|227827427|ref|YP_002829206.1|	-	5.6e-11	42.7	0.0	1.4e-10	41.4	0.0	1.7	1	0	0	1	1	1	1	Fumarase	C	C-terminus
RuvA_C	PF07499.13	gi|227827427|ref|YP_002829206.1|	-	0.011	16.2	0.0	0.081	13.4	0.0	2.5	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
NUMOD1	PF07453.13	gi|227827427|ref|YP_002829206.1|	-	0.065	13.5	0.1	0.15	12.4	0.1	1.6	1	0	0	1	1	1	0	NUMOD1	domain
CBS	PF00571.28	gi|227827429|ref|YP_002829208.1|	-	2.4e-23	82.3	0.2	1.7e-11	44.4	0.0	2.1	2	0	0	2	2	2	2	CBS	domain
DSBA	PF01323.20	gi|227827430|ref|YP_002829209.1|	-	1.5e-22	80.3	0.6	8.7e-22	77.8	0.6	1.9	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_5	PF13743.6	gi|227827430|ref|YP_002829209.1|	-	5.6e-19	68.5	0.0	1e-18	67.7	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_4	PF13462.6	gi|227827430|ref|YP_002829209.1|	-	2.8e-09	37.3	0.1	1.3e-06	28.6	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin
Thioredoxin_3	PF13192.6	gi|227827430|ref|YP_002829209.1|	-	0.0025	17.8	0.4	0.0078	16.2	0.0	2.1	3	0	0	3	3	3	1	Thioredoxin	domain
Thioredoxin_2	PF13098.6	gi|227827430|ref|YP_002829209.1|	-	0.0046	17.4	0.3	3.5	8.1	0.2	2.4	2	1	0	2	2	2	2	Thioredoxin-like	domain
AA_permease_2	PF13520.6	gi|227827431|ref|YP_002829210.1|	-	1.3e-41	142.8	58.3	1.3e-41	142.8	58.3	2.4	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227827431|ref|YP_002829210.1|	-	1e-31	110.1	60.7	1e-31	110.1	60.7	2.3	1	1	1	2	2	2	1	Amino	acid	permease
DUF3487	PF11990.8	gi|227827431|ref|YP_002829210.1|	-	0.026	14.4	0.9	0.026	14.4	0.9	5.6	5	2	3	8	8	8	0	Protein	of	unknown	function	(DUF3487)
Spore_permease	PF03845.13	gi|227827431|ref|YP_002829210.1|	-	5.9	5.6	50.4	0.18	10.6	19.0	3.7	3	1	0	3	3	3	0	Spore	germination	protein
DJ-1_PfpI	PF01965.24	gi|227827432|ref|YP_002829211.1|	-	6.9e-50	169.1	0.0	7.7e-50	168.9	0.0	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.28	gi|227827432|ref|YP_002829211.1|	-	0.0012	18.6	0.0	0.0014	18.4	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|227827432|ref|YP_002829211.1|	-	0.029	14.0	0.0	0.037	13.6	0.0	1.1	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Gly_transf_sug	PF04488.15	gi|227827432|ref|YP_002829211.1|	-	0.14	12.8	0.0	0.3	11.8	0.0	1.5	1	0	0	1	1	1	0	Glycosyltransferase	sugar-binding	region	containing	DXD	motif
GATase_5	PF13507.6	gi|227827432|ref|YP_002829211.1|	-	0.15	11.1	0.0	0.86	8.6	0.0	1.9	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
HTH_1	PF00126.27	gi|227827433|ref|YP_002829212.1|	-	2.7e-08	33.6	0.0	4.7e-08	32.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Nsp1_C	PF05064.13	gi|227827433|ref|YP_002829212.1|	-	0.00047	20.0	0.6	0.00065	19.5	0.6	1.2	1	0	0	1	1	1	1	Nsp1-like	C-terminal	region
DUF2089	PF09862.9	gi|227827433|ref|YP_002829212.1|	-	0.013	15.5	0.1	0.019	15.0	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
DUF2385	PF09539.10	gi|227827433|ref|YP_002829212.1|	-	0.14	12.7	0.0	0.19	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2385)
LZ_Tnp_IS481	PF13011.6	gi|227827433|ref|YP_002829212.1|	-	0.14	12.7	0.0	0.28	11.7	0.0	1.4	1	1	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
RRF	PF01765.19	gi|227827433|ref|YP_002829212.1|	-	0.15	12.0	4.0	0.21	11.6	4.1	1.3	1	1	0	1	1	1	0	Ribosome	recycling	factor
ATP-grasp	PF02222.22	gi|227827434|ref|YP_002829213.1|	-	7.9e-51	172.0	0.0	1.4e-50	171.2	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|227827434|ref|YP_002829213.1|	-	1.2e-14	53.7	0.3	2.2e-14	52.9	0.3	1.5	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
ATP-grasp_3	PF02655.14	gi|227827434|ref|YP_002829213.1|	-	9.5e-05	22.5	0.1	0.00015	21.8	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|227827434|ref|YP_002829213.1|	-	0.0029	17.4	0.0	0.0078	16.0	0.0	1.7	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Ribosomal_L24e	PF01246.20	gi|227827434|ref|YP_002829213.1|	-	0.024	14.8	0.1	0.046	13.9	0.1	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L24e
AIRC	PF00731.20	gi|227827435|ref|YP_002829214.1|	-	6.6e-69	230.2	0.2	7.4e-69	230.0	0.2	1.0	1	0	0	1	1	1	1	AIR	carboxylase
Fe-ADH_2	PF13685.6	gi|227827435|ref|YP_002829214.1|	-	0.0024	17.6	0.0	0.0027	17.4	0.0	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Radical_SAM	PF04055.21	gi|227827435|ref|YP_002829214.1|	-	0.016	15.6	0.0	1.3	9.4	0.0	2.2	1	1	1	2	2	2	0	Radical	SAM	superfamily
PrpR_N	PF06506.11	gi|227827435|ref|YP_002829214.1|	-	0.016	14.8	0.2	0.041	13.5	0.1	2.0	1	1	0	1	1	1	0	Propionate	catabolism	activator
DAGK_cat	PF00781.24	gi|227827435|ref|YP_002829214.1|	-	0.036	13.7	0.1	0.085	12.5	0.1	1.8	1	1	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Glutaredoxin	PF00462.24	gi|227827435|ref|YP_002829214.1|	-	0.047	13.9	0.0	0.088	13.0	0.0	1.5	1	0	0	1	1	1	0	Glutaredoxin
Fe-ADH	PF00465.19	gi|227827435|ref|YP_002829214.1|	-	0.06	12.2	0.0	0.089	11.6	0.0	1.2	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
DUF4419	PF14388.6	gi|227827435|ref|YP_002829214.1|	-	0.16	11.4	0.0	0.24	10.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4419)
FixO	PF02433.15	gi|227827435|ref|YP_002829214.1|	-	0.18	11.2	0.0	0.39	10.1	0.0	1.5	2	0	0	2	2	2	0	Cytochrome	C	oxidase,	mono-heme	subunit/FixO
FAD_binding_4	PF01565.23	gi|227827436|ref|YP_002829215.1|	-	1.4e-11	44.3	0.0	2.1e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
HTH_34	PF13601.6	gi|227827437|ref|YP_002829216.1|	-	3.5e-07	30.3	0.3	4.8e-07	29.9	0.3	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|227827437|ref|YP_002829216.1|	-	4.2e-07	29.8	0.1	6.7e-07	29.1	0.1	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|227827437|ref|YP_002829216.1|	-	2.2e-06	27.4	0.7	3.1e-06	27.0	0.7	1.3	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|227827437|ref|YP_002829216.1|	-	3.6e-06	26.8	0.6	5.6e-06	26.2	0.6	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.6	gi|227827437|ref|YP_002829216.1|	-	1.7e-05	25.2	0.2	2.1e-05	24.9	0.2	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|227827437|ref|YP_002829216.1|	-	3.3e-05	23.6	0.4	4.1e-05	23.3	0.4	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_5	PF01022.20	gi|227827437|ref|YP_002829216.1|	-	3.8e-05	23.5	0.3	5.9e-05	22.8	0.3	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|227827437|ref|YP_002829216.1|	-	6e-05	23.3	0.3	0.0001	22.6	0.3	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_24	PF13412.6	gi|227827437|ref|YP_002829216.1|	-	8.3e-05	22.1	1.0	0.00013	21.4	1.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|227827437|ref|YP_002829216.1|	-	8.6e-05	22.4	0.0	0.00011	22.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|227827437|ref|YP_002829216.1|	-	0.00012	22.1	0.0	0.00016	21.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|227827437|ref|YP_002829216.1|	-	0.00022	21.1	0.2	0.00031	20.6	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|227827437|ref|YP_002829216.1|	-	0.0032	17.0	0.1	0.0059	16.1	0.1	1.4	1	1	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|227827437|ref|YP_002829216.1|	-	0.0059	16.6	0.1	0.0077	16.2	0.1	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_54	PF18607.1	gi|227827437|ref|YP_002829216.1|	-	0.016	15.2	0.2	0.024	14.7	0.1	1.4	1	1	0	1	1	1	0	ParA	helix	turn	helix	domain
HTH_45	PF14947.6	gi|227827437|ref|YP_002829216.1|	-	0.017	15.1	1.2	0.023	14.7	1.2	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_Mga	PF08280.11	gi|227827437|ref|YP_002829216.1|	-	0.019	15.0	0.6	0.033	14.2	0.4	1.7	2	1	0	2	2	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Fe_dep_repress	PF01325.19	gi|227827437|ref|YP_002829216.1|	-	0.019	15.2	0.4	0.052	13.7	0.2	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
B-block_TFIIIC	PF04182.12	gi|227827437|ref|YP_002829216.1|	-	0.021	15.0	0.1	0.026	14.7	0.1	1.3	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_12	PF08461.10	gi|227827437|ref|YP_002829216.1|	-	0.022	14.7	0.9	0.04	13.8	0.9	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
GntR	PF00392.21	gi|227827437|ref|YP_002829216.1|	-	0.048	13.3	0.1	0.077	12.7	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF1640	PF07798.11	gi|227827437|ref|YP_002829216.1|	-	0.063	13.3	0.0	0.074	13.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
DUF3116	PF11313.8	gi|227827437|ref|YP_002829216.1|	-	0.067	13.1	0.2	0.088	12.7	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3116)
Sigma70_r4_2	PF08281.12	gi|227827437|ref|YP_002829216.1|	-	0.078	12.7	0.1	0.13	12.0	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HemN_C	PF06969.16	gi|227827437|ref|YP_002829216.1|	-	0.081	13.0	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	HemN	C-terminal	domain
HTH_9	PF08221.11	gi|227827437|ref|YP_002829216.1|	-	0.11	12.7	0.2	0.18	11.9	0.2	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
GnHR_trans	PF12369.8	gi|227827437|ref|YP_002829216.1|	-	0.11	13.3	0.2	0.13	13.1	0.2	1.3	1	1	0	1	1	1	0	Gonadotropin	hormone	receptor	transmembrane	region
SgrR_N	PF12793.7	gi|227827437|ref|YP_002829216.1|	-	0.12	12.6	0.0	0.17	12.1	0.0	1.3	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
MFS_1	PF07690.16	gi|227827438|ref|YP_002829217.1|	-	5.4e-07	28.9	57.7	0.00029	19.9	11.6	3.8	1	1	2	3	3	3	3	Major	Facilitator	Superfamily
GCV_H	PF01597.19	gi|227827439|ref|YP_002829218.1|	-	1.4e-42	144.4	1.3	1.7e-42	144.2	1.3	1.1	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|227827439|ref|YP_002829218.1|	-	1.5e-06	27.9	2.5	1.5e-06	27.9	2.5	1.6	2	0	0	2	2	2	1	Biotin-requiring	enzyme
RnfC_N	PF13375.6	gi|227827439|ref|YP_002829218.1|	-	0.00014	21.8	0.5	0.00025	21.0	0.5	1.5	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
HlyD_D23	PF16576.5	gi|227827439|ref|YP_002829218.1|	-	0.0046	16.2	0.2	0.011	14.9	0.2	1.8	1	1	0	1	1	1	1	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
Peptidase_M23	PF01551.22	gi|227827439|ref|YP_002829218.1|	-	0.0069	16.6	0.6	0.86	9.8	0.2	2.2	1	1	1	2	2	2	2	Peptidase	family	M23
Lip_prot_lig_C	PF10437.9	gi|227827440|ref|YP_002829219.1|	-	1.1e-07	31.8	0.8	2.7e-07	30.5	0.8	1.7	1	0	0	1	1	1	1	Bacterial	lipoate	protein	ligase	C-terminus
BPL_LplA_LipB	PF03099.19	gi|227827440|ref|YP_002829219.1|	-	0.0027	17.6	0.0	0.0053	16.7	0.0	1.5	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
KMP11	PF03037.16	gi|227827440|ref|YP_002829219.1|	-	0.089	13.6	3.6	1	10.2	0.5	3.0	4	0	0	4	4	4	0	Kinetoplastid	membrane	protein	11
EcoR124_C	PF12008.8	gi|227827442|ref|YP_002829221.1|	-	0.0032	17.2	4.5	0.0035	17.0	4.5	1.1	1	0	0	1	1	1	1	Type	I	restriction	and	modification	enzyme	-	subunit	R	C	terminal
OsmC	PF02566.19	gi|227827443|ref|YP_002829222.1|	-	8.6e-18	64.7	0.0	1.4e-17	64.0	0.0	1.3	1	0	0	1	1	1	1	OsmC-like	protein
DUF3490	PF11995.8	gi|227827444|ref|YP_002829223.1|	-	0.1	12.4	0.1	0.14	12.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3490)
Ammonium_transp	PF00909.21	gi|227827445|ref|YP_002829224.1|	-	1.8e-89	300.2	31.4	2.3e-89	299.9	31.4	1.1	1	0	0	1	1	1	1	Ammonium	Transporter	Family
DUF3188	PF11384.8	gi|227827445|ref|YP_002829224.1|	-	0.065	12.9	0.1	0.27	11.0	0.1	2.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3188)
STT3	PF02516.14	gi|227827447|ref|YP_002829226.1|	-	2.5e-17	63.0	32.5	4.6e-17	62.1	32.5	1.3	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
CrgA	PF06781.12	gi|227827447|ref|YP_002829226.1|	-	0.75	9.9	5.6	0.88	9.7	2.6	2.9	2	0	0	2	2	2	0	Cell	division	protein	CrgA
Nop10p	PF04135.12	gi|227827448|ref|YP_002829227.1|	-	1.3e-25	89.1	1.9	1.5e-25	89.0	1.9	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
RecR	PF02132.15	gi|227827448|ref|YP_002829227.1|	-	0.028	14.0	0.1	0.042	13.4	0.1	1.3	1	0	0	1	1	1	0	RecR	protein
zf-NADH-PPase	PF09297.11	gi|227827448|ref|YP_002829227.1|	-	0.029	14.0	0.2	0.42	10.3	0.1	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-RRN7	PF11781.8	gi|227827448|ref|YP_002829227.1|	-	0.043	13.5	0.7	0.18	11.5	0.2	2.0	1	1	1	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DNA_ligase_ZBD	PF03119.16	gi|227827448|ref|YP_002829227.1|	-	0.055	13.5	0.1	0.055	13.5	0.1	1.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
EIF_2_alpha	PF07541.12	gi|227827449|ref|YP_002829228.1|	-	6.5e-21	74.6	1.5	2.5e-20	72.7	0.4	2.1	2	0	0	2	2	2	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|227827449|ref|YP_002829228.1|	-	1.8e-11	44.2	0.2	1.8e-11	44.2	0.2	2.7	3	0	0	3	3	3	1	S1	RNA	binding	domain
SEO_C	PF14577.6	gi|227827449|ref|YP_002829228.1|	-	0.011	15.2	0.8	0.022	14.2	0.8	1.5	1	0	0	1	1	1	0	Sieve	element	occlusion	C-terminus
DUF4928	PF16280.5	gi|227827449|ref|YP_002829228.1|	-	0.012	14.9	1.1	0.11	11.7	0.1	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4928)
DUF3577	PF12101.8	gi|227827449|ref|YP_002829228.1|	-	0.19	11.5	1.8	1.4	8.7	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3577)
Lactamase_B	PF00753.27	gi|227827449|ref|YP_002829228.1|	-	0.2	11.7	0.0	0.51	10.3	0.0	1.6	2	0	0	2	2	2	0	Metallo-beta-lactamase	superfamily
Ribosomal_S27e	PF01667.17	gi|227827450|ref|YP_002829229.1|	-	1.4e-19	69.6	1.2	1.5e-19	69.5	1.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.12	gi|227827450|ref|YP_002829229.1|	-	7.2e-05	22.2	1.4	9.5e-05	21.8	1.4	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
HypA	PF01155.19	gi|227827450|ref|YP_002829229.1|	-	0.0027	17.7	0.1	0.0031	17.5	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|227827450|ref|YP_002829229.1|	-	0.0029	17.3	4.9	0.3	10.9	2.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|227827450|ref|YP_002829229.1|	-	0.0035	17.0	2.8	0.04	13.6	2.6	2.3	1	1	1	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF1610	PF07754.11	gi|227827450|ref|YP_002829229.1|	-	0.0038	17.2	3.8	0.2	11.6	0.4	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.6	gi|227827450|ref|YP_002829229.1|	-	0.004	16.5	1.7	0.086	12.3	0.3	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|227827450|ref|YP_002829229.1|	-	0.0052	16.7	1.5	0.011	15.7	1.7	1.4	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|227827450|ref|YP_002829229.1|	-	0.014	15.2	3.0	0.75	9.7	3.0	2.3	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
DZR	PF12773.7	gi|227827450|ref|YP_002829229.1|	-	0.018	15.1	1.2	0.032	14.3	1.2	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|227827450|ref|YP_002829229.1|	-	0.028	14.3	0.7	4.8	7.2	0.0	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
PADR1	PF08063.12	gi|227827450|ref|YP_002829229.1|	-	0.038	13.8	1.9	1.1	9.1	3.1	2.0	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
zf-trcl	PF13451.6	gi|227827450|ref|YP_002829229.1|	-	0.041	13.8	0.2	8.4	6.4	0.0	2.1	2	0	0	2	2	2	0	Probable	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|227827450|ref|YP_002829229.1|	-	0.041	14.3	0.4	0.051	13.9	0.4	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
CpXC	PF14353.6	gi|227827450|ref|YP_002829229.1|	-	0.041	13.9	1.4	1.7	8.7	0.2	2.1	1	1	1	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.10	gi|227827450|ref|YP_002829229.1|	-	0.043	13.9	2.3	0.1	12.7	2.2	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_6	PF14599.6	gi|227827450|ref|YP_002829229.1|	-	0.047	13.7	0.1	0.062	13.3	0.1	1.2	1	0	0	1	1	1	0	Zinc-ribbon
Zn_Tnp_IS91	PF14319.6	gi|227827450|ref|YP_002829229.1|	-	0.065	13.3	0.3	0.083	12.9	0.3	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
DUF35_N	PF12172.8	gi|227827450|ref|YP_002829229.1|	-	0.075	12.9	0.7	7.2	6.6	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF3797	PF12677.7	gi|227827450|ref|YP_002829229.1|	-	0.075	12.9	3.3	1.4	8.8	3.5	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
RNA_pol_N	PF01194.17	gi|227827450|ref|YP_002829229.1|	-	0.11	12.9	0.7	0.18	12.1	0.1	1.7	2	0	0	2	2	2	0	RNA	polymerases	N	/	8	kDa	subunit
Zn_ribbon_SprT	PF17283.2	gi|227827450|ref|YP_002829229.1|	-	0.11	12.4	1.4	6.5	6.8	0.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|227827450|ref|YP_002829229.1|	-	0.12	13.1	1.8	0.5	11.1	1.7	1.9	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-NADH-PPase	PF09297.11	gi|227827450|ref|YP_002829229.1|	-	0.12	12.0	3.2	4.8	6.9	3.3	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|227827450|ref|YP_002829229.1|	-	0.12	12.3	4.0	1.2	9.2	0.4	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|227827450|ref|YP_002829229.1|	-	0.2	11.7	3.6	3.9	7.6	0.1	2.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_5	PF13719.6	gi|227827450|ref|YP_002829229.1|	-	0.25	11.1	3.6	4	7.3	3.6	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|227827450|ref|YP_002829229.1|	-	0.47	10.6	3.5	2.9	8.1	0.9	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Mu-like_Com	PF10122.9	gi|227827450|ref|YP_002829229.1|	-	1.5	8.4	5.5	0.45	10.0	0.7	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
Ribosomal_L44	PF00935.19	gi|227827451|ref|YP_002829230.1|	-	1.3e-28	99.3	7.3	2e-28	98.7	7.3	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.6	gi|227827451|ref|YP_002829230.1|	-	0.0027	17.0	0.8	1.4	8.5	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227827451|ref|YP_002829230.1|	-	0.0076	15.9	3.9	0.81	9.5	0.4	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_13	PF09855.9	gi|227827451|ref|YP_002829230.1|	-	0.014	15.6	0.8	0.49	10.6	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zinc_ribbon_4	PF13717.6	gi|227827451|ref|YP_002829230.1|	-	0.022	14.7	4.9	0.17	11.8	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_KTR	PF14205.6	gi|227827451|ref|YP_002829230.1|	-	0.053	13.3	3.4	0.61	9.9	0.1	2.2	2	0	0	2	2	2	0	Cysteine-rich	KTR
CpXC	PF14353.6	gi|227827451|ref|YP_002829230.1|	-	0.057	13.5	0.3	6.8	6.8	0.1	2.1	2	0	0	2	2	2	0	CpXC	protein
RNA_POL_M_15KD	PF02150.16	gi|227827451|ref|YP_002829230.1|	-	0.063	13.2	1.2	1.6	8.6	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
CxC5	PF18718.1	gi|227827451|ref|YP_002829230.1|	-	0.21	11.7	6.6	0.37	10.9	1.4	2.1	1	1	1	2	2	2	0	CxC5	like	cysteine	cluster	associated	with	KDZ	transposases
TFIIS_C	PF01096.18	gi|227827451|ref|YP_002829230.1|	-	0.43	10.5	3.3	4.2	7.3	0.3	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DNA_primase_S	PF01896.19	gi|227827453|ref|YP_002829232.1|	-	9.1e-13	48.6	0.4	3.5e-06	27.2	0.1	2.9	1	1	1	2	2	2	2	DNA	primase	small	subunit
RecR	PF02132.15	gi|227827453|ref|YP_002829232.1|	-	0.1	12.2	2.0	0.18	11.4	2.0	1.4	1	0	0	1	1	1	0	RecR	protein
zf-NADH-PPase	PF09297.11	gi|227827453|ref|YP_002829232.1|	-	0.15	11.8	0.3	0.25	11.1	0.3	1.3	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
PCNA_C	PF02747.15	gi|227827454|ref|YP_002829233.1|	-	1.5e-09	38.1	0.2	1.3e-07	31.9	0.0	2.8	3	1	0	3	3	3	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
PCNA_N	PF00705.18	gi|227827454|ref|YP_002829233.1|	-	1.8e-08	34.2	0.0	2.9e-08	33.5	0.0	1.3	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad1	PF02144.16	gi|227827454|ref|YP_002829233.1|	-	3.1e-05	23.2	0.1	0.017	14.2	0.0	2.1	1	1	1	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
ATP_bind_1	PF03029.17	gi|227827455|ref|YP_002829234.1|	-	2.7e-56	191.0	0.0	3.1e-56	190.9	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
CLP1_P	PF16575.5	gi|227827455|ref|YP_002829234.1|	-	5.9e-06	26.2	0.1	0.003	17.4	0.0	2.8	3	0	0	3	3	3	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
GTP_EFTU	PF00009.27	gi|227827455|ref|YP_002829234.1|	-	1.1e-05	25.0	0.5	0.055	13.0	0.0	3.0	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
PduV-EutP	PF10662.9	gi|227827455|ref|YP_002829234.1|	-	2.6e-05	24.0	0.0	0.0076	16.0	0.0	2.9	2	1	0	3	3	3	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_18	PF13238.6	gi|227827455|ref|YP_002829234.1|	-	7.9e-05	23.2	0.0	0.00033	21.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.22	gi|227827455|ref|YP_002829234.1|	-	0.00014	21.6	0.1	0.0016	18.1	0.1	2.3	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.6	gi|227827455|ref|YP_002829234.1|	-	0.0002	21.8	0.0	0.0019	18.6	0.0	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
CbiA	PF01656.23	gi|227827455|ref|YP_002829234.1|	-	0.00064	19.8	0.0	0.0011	19.0	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MMR_HSR1_Xtn	PF16897.5	gi|227827455|ref|YP_002829234.1|	-	0.00066	19.7	1.3	0.29	11.2	0.1	2.7	2	1	0	2	2	1	1	C-terminal	region	of	MMR_HSR1	domain
FeoB_N	PF02421.18	gi|227827455|ref|YP_002829234.1|	-	0.0012	18.4	0.1	0.39	10.2	0.0	3.0	2	1	0	3	3	3	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|227827455|ref|YP_002829234.1|	-	0.0013	18.7	0.1	4.8	7.1	0.0	3.5	3	1	0	3	3	3	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|227827455|ref|YP_002829234.1|	-	0.0022	18.0	0.0	0.021	14.9	0.0	2.2	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
G-alpha	PF00503.20	gi|227827455|ref|YP_002829234.1|	-	0.0035	16.5	0.1	0.22	10.6	0.0	2.2	2	0	0	2	2	2	1	G-protein	alpha	subunit
MeaB	PF03308.16	gi|227827455|ref|YP_002829234.1|	-	0.0038	16.2	0.0	0.13	11.2	0.0	2.1	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NACHT	PF05729.12	gi|227827455|ref|YP_002829234.1|	-	0.0062	16.5	0.0	0.02	14.8	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
cobW	PF02492.19	gi|227827455|ref|YP_002829234.1|	-	0.0089	15.6	0.1	0.38	10.3	0.0	2.3	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
DUF87	PF01935.17	gi|227827455|ref|YP_002829234.1|	-	0.0098	16.0	0.1	0.016	15.3	0.1	1.6	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_14	PF13173.6	gi|227827455|ref|YP_002829234.1|	-	0.012	15.6	0.2	0.17	11.9	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
SRPRB	PF09439.10	gi|227827455|ref|YP_002829234.1|	-	0.013	14.9	0.2	2.5	7.5	0.1	2.2	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
AAA_24	PF13479.6	gi|227827455|ref|YP_002829234.1|	-	0.015	15.0	0.0	0.026	14.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|227827455|ref|YP_002829234.1|	-	0.017	15.3	0.1	0.027	14.7	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|227827455|ref|YP_002829234.1|	-	0.018	14.5	0.0	0.038	13.4	0.0	1.5	2	0	0	2	2	1	0	Chromatin	associated	protein	KTI12
RNA_helicase	PF00910.22	gi|227827455|ref|YP_002829234.1|	-	0.02	15.2	0.0	0.12	12.8	0.0	2.1	2	0	0	2	2	2	0	RNA	helicase
AAA_22	PF13401.6	gi|227827455|ref|YP_002829234.1|	-	0.026	14.8	0.1	0.07	13.4	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|227827455|ref|YP_002829234.1|	-	0.03	14.2	0.6	0.27	11.1	0.1	2.5	2	1	0	2	2	2	0	NTPase
APS_kinase	PF01583.20	gi|227827455|ref|YP_002829234.1|	-	0.033	14.1	0.0	0.05	13.5	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
PhoH	PF02562.16	gi|227827455|ref|YP_002829234.1|	-	0.034	13.6	0.0	0.061	12.8	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
ABC_tran	PF00005.27	gi|227827455|ref|YP_002829234.1|	-	0.044	14.3	0.1	0.065	13.7	0.1	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA_30	PF13604.6	gi|227827455|ref|YP_002829234.1|	-	0.048	13.4	0.0	0.24	11.1	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|227827455|ref|YP_002829234.1|	-	0.057	13.7	0.0	0.78	10.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_31	PF13614.6	gi|227827455|ref|YP_002829234.1|	-	0.058	13.3	0.4	1.4	8.8	0.4	2.5	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|227827455|ref|YP_002829234.1|	-	0.067	12.4	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
MobB	PF03205.14	gi|227827455|ref|YP_002829234.1|	-	0.094	12.6	0.0	0.25	11.2	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArsA_ATPase	PF02374.15	gi|227827455|ref|YP_002829234.1|	-	0.095	11.9	0.0	0.21	10.7	0.0	1.5	1	0	0	1	1	1	0	Anion-transporting	ATPase
AAA_7	PF12775.7	gi|227827455|ref|YP_002829234.1|	-	0.1	12.1	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TrwB_AAD_bind	PF10412.9	gi|227827455|ref|YP_002829234.1|	-	0.1	11.5	0.0	0.16	10.9	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_33	PF13671.6	gi|227827455|ref|YP_002829234.1|	-	0.12	12.5	0.0	0.17	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|227827455|ref|YP_002829234.1|	-	0.12	12.0	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_5	PF07728.14	gi|227827455|ref|YP_002829234.1|	-	0.13	12.3	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Septin	PF00735.18	gi|227827455|ref|YP_002829234.1|	-	0.18	11.0	0.5	12	5.0	0.1	2.5	2	1	0	2	2	2	0	Septin
Pribosyltran_N	PF13793.6	gi|227827456|ref|YP_002829235.1|	-	6.8e-31	106.6	0.0	6.3e-27	93.8	0.0	2.3	2	0	0	2	2	2	2	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|227827456|ref|YP_002829235.1|	-	1.1e-18	67.3	1.8	1.8e-17	63.3	1.4	2.3	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|227827456|ref|YP_002829235.1|	-	2.4e-09	37.5	1.4	6.1e-09	36.2	0.7	2.0	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|227827456|ref|YP_002829235.1|	-	0.0027	17.2	0.1	0.026	14.0	0.0	2.1	2	0	0	2	2	2	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|227827456|ref|YP_002829235.1|	-	0.0054	16.3	0.1	0.0081	15.7	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase
UPF0020	PF01170.18	gi|227827457|ref|YP_002829236.1|	-	3.7e-23	82.2	0.0	2.4e-22	79.6	0.0	2.0	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
N6_N4_Mtase	PF01555.18	gi|227827457|ref|YP_002829236.1|	-	4.9e-10	39.5	0.0	7.6e-07	29.1	0.0	2.5	2	1	0	2	2	2	2	DNA	methylase
MTS	PF05175.14	gi|227827457|ref|YP_002829236.1|	-	4.4e-05	23.1	0.0	0.0001	21.9	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	small	domain
MethyltransfD12	PF02086.15	gi|227827457|ref|YP_002829236.1|	-	0.00059	19.6	0.2	0.0043	16.8	0.2	2.3	1	1	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|227827457|ref|YP_002829236.1|	-	0.00082	19.1	0.0	0.0019	17.9	0.0	1.6	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.6	gi|227827457|ref|YP_002829236.1|	-	0.00095	19.8	0.0	0.0023	18.6	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227827457|ref|YP_002829236.1|	-	0.014	15.2	0.0	0.1	12.4	0.0	2.2	2	0	0	2	2	2	0	Methyltransferase	domain
Eco57I	PF07669.11	gi|227827457|ref|YP_002829236.1|	-	0.022	15.2	0.0	1.1	9.8	0.0	2.4	2	0	0	2	2	2	0	Eco57I	restriction-modification	methylase
S_100	PF01023.19	gi|227827457|ref|YP_002829236.1|	-	0.035	13.8	0.1	0.1	12.4	0.0	1.9	2	0	0	2	2	2	0	S-100/ICaBP	type	calcium	binding	domain
N6_Mtase	PF02384.16	gi|227827457|ref|YP_002829236.1|	-	0.04	13.2	0.1	0.094	12.0	0.0	1.7	2	1	0	2	2	2	0	N-6	DNA	Methylase
Methyltransf_4	PF02390.17	gi|227827457|ref|YP_002829236.1|	-	0.085	12.3	0.0	0.17	11.3	0.0	1.5	1	0	0	1	1	1	0	Putative	methyltransferase
Lactamase_B_2	PF12706.7	gi|227827458|ref|YP_002829237.1|	-	5.8e-17	61.9	0.0	1.4e-08	34.5	0.0	2.1	2	0	0	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|227827458|ref|YP_002829237.1|	-	5.8e-11	42.8	0.0	5.1e-10	39.7	0.0	2.1	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|227827458|ref|YP_002829237.1|	-	0.033	13.9	0.0	0.079	12.6	0.0	1.6	1	0	0	1	1	1	0	tRNase	Z	endonuclease
RNA_binding	PF01877.17	gi|227827459|ref|YP_002829238.1|	-	1.9e-18	66.9	0.4	2.2e-18	66.6	0.4	1.1	1	0	0	1	1	1	1	RNA	binding
DUF5378	PF17349.2	gi|227827459|ref|YP_002829238.1|	-	0.03	13.6	0.1	0.034	13.5	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5378)
AAA_18	PF13238.6	gi|227827460|ref|YP_002829239.1|	-	1.1e-13	51.9	0.2	2.2e-13	50.9	0.1	1.6	1	1	1	2	2	2	1	AAA	domain
AAA_17	PF13207.6	gi|227827460|ref|YP_002829239.1|	-	7.6e-09	36.1	0.6	1.2e-08	35.5	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|227827460|ref|YP_002829239.1|	-	2.7e-08	34.1	0.0	3.9e-08	33.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|227827460|ref|YP_002829239.1|	-	2.2e-06	27.9	0.0	2.6e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Adenylate	kinase
CoaE	PF01121.20	gi|227827460|ref|YP_002829239.1|	-	0.00016	21.4	0.1	0.29	10.8	0.0	2.1	1	1	1	2	2	2	2	Dephospho-CoA	kinase
AAA_22	PF13401.6	gi|227827460|ref|YP_002829239.1|	-	0.00056	20.2	0.0	0.00079	19.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|227827460|ref|YP_002829239.1|	-	0.0018	18.6	0.0	0.0038	17.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|227827460|ref|YP_002829239.1|	-	0.0018	17.6	0.0	0.0057	16.0	0.0	1.8	2	0	0	2	2	2	1	Zeta	toxin
KTI12	PF08433.10	gi|227827460|ref|YP_002829239.1|	-	0.0027	17.2	0.2	0.0051	16.3	0.0	1.5	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
NTPase_1	PF03266.15	gi|227827460|ref|YP_002829239.1|	-	0.0045	16.9	0.2	0.38	10.6	0.0	2.2	2	0	0	2	2	2	1	NTPase
Hpr_kinase_C	PF07475.12	gi|227827460|ref|YP_002829239.1|	-	0.005	16.4	0.1	0.0094	15.5	0.1	1.4	1	0	0	1	1	1	1	HPr	Serine	kinase	C-terminal	domain
cobW	PF02492.19	gi|227827460|ref|YP_002829239.1|	-	0.015	14.9	0.1	4	7.0	0.1	2.1	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Sigma54_activ_2	PF14532.6	gi|227827460|ref|YP_002829239.1|	-	0.02	15.0	0.0	0.13	12.4	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
APS_kinase	PF01583.20	gi|227827460|ref|YP_002829239.1|	-	0.028	14.3	0.1	0.32	10.9	0.0	2.1	1	1	1	2	2	2	0	Adenylylsulphate	kinase
CPT	PF07931.12	gi|227827460|ref|YP_002829239.1|	-	0.038	13.8	0.2	0.39	10.6	0.2	2.1	1	1	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
MeaB	PF03308.16	gi|227827460|ref|YP_002829239.1|	-	0.038	13.0	0.2	0.082	11.9	0.2	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
dNK	PF01712.19	gi|227827460|ref|YP_002829239.1|	-	0.039	13.8	0.2	0.26	11.1	0.0	2.0	1	1	1	2	2	2	0	Deoxynucleoside	kinase
AAA_14	PF13173.6	gi|227827460|ref|YP_002829239.1|	-	0.041	13.9	0.0	0.066	13.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|227827460|ref|YP_002829239.1|	-	0.043	14.2	0.1	0.066	13.6	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|227827460|ref|YP_002829239.1|	-	0.044	13.5	0.1	0.083	12.6	0.0	1.6	1	1	1	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|227827460|ref|YP_002829239.1|	-	0.055	13.5	0.2	0.45	10.5	0.1	2.2	1	1	1	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Tra_M	PF05261.11	gi|227827460|ref|YP_002829239.1|	-	0.075	13.0	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	TraM	protein,	DNA-binding
LigT_PEase	PF02834.16	gi|227827461|ref|YP_002829240.1|	-	1.9e-35	120.9	0.0	3.4e-18	65.6	0.0	2.0	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|227827461|ref|YP_002829240.1|	-	4.7e-14	52.6	0.0	5.8e-14	52.3	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|227827461|ref|YP_002829240.1|	-	6.9e-10	39.2	0.0	1.3e-09	38.3	0.0	1.5	1	1	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.9	gi|227827461|ref|YP_002829240.1|	-	0.019	14.5	0.0	0.03	13.8	0.0	1.4	1	1	0	1	1	1	0	Uncharacterised	conserved	protein
tRNA_NucTransf2	PF09249.11	gi|227827462|ref|YP_002829241.1|	-	4.4e-45	152.6	0.0	7.8e-45	151.8	0.0	1.4	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|227827462|ref|YP_002829241.1|	-	5e-17	62.0	0.4	1.7e-16	60.3	0.4	1.9	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|227827462|ref|YP_002829241.1|	-	1.3e-06	28.7	0.2	5.2e-06	26.7	0.1	2.0	2	0	0	2	2	2	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
DNA_pol_B_palm	PF14792.6	gi|227827462|ref|YP_002829241.1|	-	0.064	13.5	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
RIO1	PF01163.22	gi|227827463|ref|YP_002829242.1|	-	0.0006	19.5	0.1	0.00093	18.8	0.1	1.3	1	0	0	1	1	1	1	RIO1	family
SWIB	PF02201.18	gi|227827463|ref|YP_002829242.1|	-	0.0013	18.5	0.3	0.28	11.1	0.0	2.4	2	0	0	2	2	2	2	SWIB/MDM2	domain
APH	PF01636.23	gi|227827463|ref|YP_002829242.1|	-	0.047	13.6	0.0	0.18	11.7	0.0	1.8	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
Rad50_zn_hook	PF04423.14	gi|227827464|ref|YP_002829243.1|	-	0.085	12.7	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
Curlin_rpt	PF07012.12	gi|227827466|ref|YP_002829246.1|	-	0.25	11.4	1.9	0.69	10.0	1.9	1.7	1	0	0	1	1	1	0	Curlin	associated	repeat
ABC_tran	PF00005.27	gi|227827467|ref|YP_002829247.1|	-	4.4e-24	85.6	0.0	7.1e-24	84.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227827467|ref|YP_002829247.1|	-	6.6e-17	62.3	1.6	1.3e-09	38.3	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227827467|ref|YP_002829247.1|	-	1.6e-10	40.8	5.1	1e-05	25.1	0.9	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227827467|ref|YP_002829247.1|	-	3.9e-05	23.3	0.0	6.7e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|227827467|ref|YP_002829247.1|	-	5.6e-05	23.0	8.9	0.00013	21.8	8.9	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|227827467|ref|YP_002829247.1|	-	6.5e-05	23.5	4.3	0.00015	22.3	4.3	1.8	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|227827467|ref|YP_002829247.1|	-	0.00027	20.1	0.0	0.00035	19.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_14	PF13173.6	gi|227827467|ref|YP_002829247.1|	-	0.00031	20.8	0.6	0.042	13.9	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|227827467|ref|YP_002829247.1|	-	0.0083	15.9	0.0	0.012	15.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|227827467|ref|YP_002829247.1|	-	0.01	16.3	0.0	0.018	15.4	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|227827467|ref|YP_002829247.1|	-	0.012	15.6	0.1	0.03	14.2	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
ATPase_2	PF01637.18	gi|227827467|ref|YP_002829247.1|	-	0.023	14.6	0.8	0.05	13.5	0.8	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
DEAD	PF00270.29	gi|227827467|ref|YP_002829247.1|	-	0.023	14.4	0.0	0.038	13.7	0.0	1.4	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
DUF3584	PF12128.8	gi|227827467|ref|YP_002829247.1|	-	0.035	11.7	0.0	0.047	11.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_24	PF13479.6	gi|227827467|ref|YP_002829247.1|	-	0.051	13.3	0.0	0.1	12.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|227827467|ref|YP_002829247.1|	-	0.055	13.2	0.0	0.23	11.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|227827467|ref|YP_002829247.1|	-	0.066	13.5	0.0	0.62	10.3	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_7	PF12775.7	gi|227827467|ref|YP_002829247.1|	-	0.093	12.2	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Metallophos_3	PF14582.6	gi|227827467|ref|YP_002829247.1|	-	0.1	11.9	0.0	0.15	11.4	0.0	1.2	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
AAA	PF00004.29	gi|227827467|ref|YP_002829247.1|	-	0.12	12.8	0.1	0.2	12.1	0.1	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|227827467|ref|YP_002829247.1|	-	0.13	12.0	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
fn3	PF00041.21	gi|227827468|ref|YP_002829248.1|	-	2.1e-19	69.7	15.8	6.8e-11	42.4	0.8	3.7	5	1	0	5	5	5	2	Fibronectin	type	III	domain
Kelch_6	PF13964.6	gi|227827468|ref|YP_002829248.1|	-	9.4e-19	67.0	34.5	0.00021	21.5	0.6	7.5	4	1	3	7	7	7	4	Kelch	motif
Kelch_1	PF01344.25	gi|227827468|ref|YP_002829248.1|	-	5.5e-12	45.1	34.4	0.00015	21.3	0.7	6.9	6	1	0	6	6	6	5	Kelch	motif
Kelch_5	PF13854.6	gi|227827468|ref|YP_002829248.1|	-	2.4e-09	37.0	33.4	0.0074	16.2	2.4	6.9	6	0	0	6	6	6	4	Kelch	motif
Kelch_2	PF07646.15	gi|227827468|ref|YP_002829248.1|	-	1.1e-07	31.5	16.6	0.19	11.8	0.1	6.3	6	0	0	6	6	6	4	Kelch	motif
DUF2369	PF10179.9	gi|227827468|ref|YP_002829248.1|	-	3.7e-07	30.4	0.2	0.025	15.0	0.0	2.5	2	0	0	2	2	2	2	Uncharacterised	conserved	protein	(DUF2369)
Kelch_4	PF13418.6	gi|227827468|ref|YP_002829248.1|	-	0.00058	19.8	21.5	0.086	12.9	0.0	6.4	6	1	0	6	6	6	2	Galactose	oxidase,	central	domain
Interfer-bind	PF09294.10	gi|227827468|ref|YP_002829248.1|	-	0.0028	17.9	0.1	2	8.8	0.0	2.5	2	0	0	2	2	2	2	Interferon-alpha/beta	receptor,	fibronectin	type	III
Pur_ac_phosph_N	PF16656.5	gi|227827468|ref|YP_002829248.1|	-	0.094	13.3	7.7	0.38	11.4	0.3	3.7	4	1	0	4	4	4	0	Purple	acid	Phosphatase,	N-terminal	domain
Y_Y_Y	PF07495.13	gi|227827468|ref|YP_002829248.1|	-	0.51	10.3	13.1	0.28	11.2	0.3	4.1	4	0	0	4	4	4	0	Y_Y_Y	domain
Kelch_3	PF13415.6	gi|227827468|ref|YP_002829248.1|	-	2.8	8.4	17.7	16	5.9	0.1	6.3	4	2	1	5	5	5	0	Galactose	oxidase,	central	domain
BPD_transp_1	PF00528.22	gi|227827469|ref|YP_002829249.1|	-	2.3e-16	60.1	15.9	2.3e-16	60.1	15.9	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_11	PF13531.6	gi|227827470|ref|YP_002829250.1|	-	3.4e-20	72.8	0.4	5.2e-20	72.2	0.4	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|227827470|ref|YP_002829250.1|	-	8.2e-11	42.4	6.2	1.1e-10	42.0	6.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF3446	PF11928.8	gi|227827470|ref|YP_002829250.1|	-	0.064	13.6	9.8	0.17	12.2	8.6	2.3	2	0	0	2	2	2	0	Early	growth	response	N-terminal	domain
DUF2371	PF10177.9	gi|227827470|ref|YP_002829250.1|	-	0.42	10.8	1.8	7.9	6.7	0.4	2.3	1	1	1	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
DUF4307	PF14155.6	gi|227827470|ref|YP_002829250.1|	-	0.57	10.0	2.5	0.59	10.0	0.9	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4307)
FeoB_associated	PF12669.7	gi|227827470|ref|YP_002829250.1|	-	3.5	8.1	4.7	7.7	7.0	4.7	1.5	1	0	0	1	1	1	0	FeoB-associated	Cys-rich	membrane	protein
Saf_2TM	PF18303.1	gi|227827470|ref|YP_002829250.1|	-	7.3	6.2	6.9	32	4.1	6.9	1.9	1	1	0	1	1	1	0	SAVED-fused	2TM	effector	domain
adh_short	PF00106.25	gi|227827471|ref|YP_002829251.1|	-	2.1e-47	161.1	0.3	4.7e-47	160.0	0.3	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|227827471|ref|YP_002829251.1|	-	8.9e-36	123.6	0.0	1.4e-35	122.9	0.0	1.3	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.21	gi|227827471|ref|YP_002829251.1|	-	9.2e-07	28.6	0.1	1.6e-06	27.8	0.1	1.5	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|227827471|ref|YP_002829251.1|	-	1.5e-05	24.9	0.1	0.00026	20.9	0.1	2.2	1	1	0	1	1	1	1	NAD(P)H-binding
KR	PF08659.10	gi|227827471|ref|YP_002829251.1|	-	0.00036	20.5	0.0	0.013	15.4	0.0	2.3	1	1	0	1	1	1	1	KR	domain
THF_DHG_CYH_C	PF02882.19	gi|227827471|ref|YP_002829251.1|	-	0.0015	17.9	0.1	0.0032	16.8	0.1	1.5	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
RmlD_sub_bind	PF04321.17	gi|227827471|ref|YP_002829251.1|	-	0.0049	16.0	0.1	0.015	14.4	0.0	1.7	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|227827472|ref|YP_002829252.1|	-	8.6e-19	67.2	0.0	1.8e-18	66.2	0.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
FAM153	PF15722.5	gi|227827472|ref|YP_002829252.1|	-	1.6	9.1	3.5	0.49	10.7	0.4	1.7	2	0	0	2	2	2	0	FAM153	family
Resolvase	PF00239.21	gi|227827473|ref|YP_002829253.1|	-	4.9e-21	75.4	0.1	1.4e-20	73.9	0.1	1.6	2	0	0	2	2	2	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|227827473|ref|YP_002829253.1|	-	4.9e-16	58.6	0.7	1.1e-15	57.5	0.7	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR	PF00376.23	gi|227827473|ref|YP_002829253.1|	-	9.4e-07	28.5	0.2	2.1e-06	27.4	0.2	1.7	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_1	PF13411.6	gi|227827473|ref|YP_002829253.1|	-	0.00033	20.7	0.1	0.00084	19.4	0.1	1.8	1	1	0	1	1	1	1	MerR	HTH	family	regulatory	protein
HTH_23	PF13384.6	gi|227827473|ref|YP_002829253.1|	-	0.00034	20.3	0.0	0.00091	19.0	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|227827473|ref|YP_002829253.1|	-	0.002	18.2	0.5	0.0062	16.6	0.0	2.0	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|227827473|ref|YP_002829253.1|	-	0.011	15.7	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_psq	PF05225.16	gi|227827473|ref|YP_002829253.1|	-	0.016	15.0	1.1	0.6	9.9	0.0	2.8	3	0	0	3	3	3	0	helix-turn-helix,	Psq	domain
Phage_AlpA	PF05930.12	gi|227827473|ref|YP_002829253.1|	-	0.017	14.9	0.0	0.036	13.9	0.0	1.6	1	0	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
YcxB	PF14317.6	gi|227827473|ref|YP_002829253.1|	-	0.026	14.2	0.1	0.051	13.3	0.1	1.5	1	0	0	1	1	1	0	YcxB-like	protein
HAD_SAK_2	PF18143.1	gi|227827473|ref|YP_002829253.1|	-	0.04	14.2	0.0	4.4	7.6	0.0	2.1	1	1	1	2	2	2	0	HAD	domain	in	Swiss	Army	Knife	RNA	repair	proteins
Helicase_C	PF00271.31	gi|227827473|ref|YP_002829253.1|	-	0.098	13.0	0.1	5	7.5	0.0	2.2	1	1	1	2	2	2	0	Helicase	conserved	C-terminal	domain
Exc	PF07825.11	gi|227827473|ref|YP_002829253.1|	-	0.12	12.4	0.1	0.2	11.6	0.1	1.3	1	0	0	1	1	1	0	Excisionase-like	protein
TatD_DNase	PF01026.21	gi|227827474|ref|YP_002829254.1|	-	7.1e-33	114.0	0.0	2.1e-32	112.5	0.0	1.6	1	1	0	1	1	1	1	TatD	related	DNase
NADHdh	PF00146.21	gi|227827476|ref|YP_002829256.1|	-	2.5e-34	118.9	22.0	3.2e-34	118.6	22.0	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
CrgA	PF06781.12	gi|227827477|ref|YP_002829257.1|	-	0.24	11.5	1.7	0.33	11.0	0.1	2.1	2	0	0	2	2	2	0	Cell	division	protein	CrgA
Proton_antipo_M	PF00361.20	gi|227827478|ref|YP_002829258.1|	-	2.9e-44	151.5	24.6	2.9e-44	151.5	24.6	2.7	1	1	2	3	3	3	1	Proton-conducting	membrane	transporter
Complex1_49kDa	PF00346.19	gi|227827479|ref|YP_002829259.1|	-	2e-21	76.3	0.0	5.2e-18	65.1	0.0	2.2	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|227827479|ref|YP_002829259.1|	-	0.0067	15.4	0.0	0.48	9.2	0.0	2.1	2	0	0	2	2	2	2	Nickel-dependent	hydrogenase
Oxidored_q6	PF01058.22	gi|227827480|ref|YP_002829260.1|	-	5.2e-21	74.9	0.4	1.5e-20	73.4	0.4	1.7	1	1	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Fer4	PF00037.27	gi|227827480|ref|YP_002829260.1|	-	0.1	12.5	13.1	0.17	11.8	0.4	3.6	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Proton_antipo_M	PF00361.20	gi|227827481|ref|YP_002829261.1|	-	1.3e-15	57.4	28.4	1.3e-15	57.4	28.4	4.1	3	1	2	5	5	5	2	Proton-conducting	membrane	transporter
Jnk-SapK_ap_N	PF09744.9	gi|227827482|ref|YP_002829262.1|	-	0.042	14.1	3.2	0.05	13.8	3.2	1.1	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Rhodanese	PF00581.20	gi|227827483|ref|YP_002829263.1|	-	1.1e-33	115.9	0.1	5.2e-17	62.3	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
DUF442	PF04273.13	gi|227827483|ref|YP_002829263.1|	-	0.085	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Putative	phosphatase	(DUF442)
DUF2582	PF10771.9	gi|227827483|ref|YP_002829263.1|	-	0.096	12.8	1.2	0.3	11.3	0.1	2.4	3	0	0	3	3	3	0	Winged	helix-turn-helix	domain	(DUF2582)
NicO	PF03824.16	gi|227827484|ref|YP_002829264.1|	-	1.9e-97	326.0	12.6	1.9e-97	326.0	12.6	1.4	2	0	0	2	2	2	1	High-affinity	nickel-transport	protein
Brr6_like_C_C	PF10104.9	gi|227827484|ref|YP_002829264.1|	-	0.39	10.5	2.5	0.68	9.7	0.5	2.5	2	0	0	2	2	2	0	Di-sulfide	bridge	nucleocytoplasmic	transport	domain
TPP_enzyme_N	PF02776.18	gi|227827485|ref|YP_002829265.1|	-	6.6e-49	165.8	0.0	2.4e-47	160.7	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|227827485|ref|YP_002829265.1|	-	3.6e-40	137.3	0.5	1.7e-39	135.0	0.0	2.3	2	1	1	3	3	3	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|227827485|ref|YP_002829265.1|	-	6.2e-31	107.0	0.0	1.1e-30	106.1	0.0	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.19	gi|227827485|ref|YP_002829265.1|	-	0.00079	19.2	0.0	0.0018	18.0	0.0	1.5	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Methyltrn_RNA_4	PF09936.9	gi|227827485|ref|YP_002829265.1|	-	0.049	13.5	0.0	0.094	12.6	0.0	1.4	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
MdoG	PF04349.12	gi|227827485|ref|YP_002829265.1|	-	0.17	10.8	0.0	0.3	10.0	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	glucan	biosynthesis	protein,	MdoG
Pyr_redox_2	PF07992.14	gi|227827486|ref|YP_002829266.1|	-	9.4e-40	136.7	0.5	1.1e-39	136.4	0.5	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227827486|ref|YP_002829266.1|	-	1.8e-12	47.6	2.4	5.3e-11	42.9	0.3	3.2	4	0	0	4	4	4	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227827486|ref|YP_002829266.1|	-	1.3e-05	24.6	0.1	3.1e-05	23.4	0.1	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|227827486|ref|YP_002829266.1|	-	0.00011	21.4	0.0	0.00019	20.7	0.0	1.3	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
DAO	PF01266.24	gi|227827486|ref|YP_002829266.1|	-	0.015	14.9	1.5	18	4.7	1.2	3.6	3	1	1	4	4	4	0	FAD	dependent	oxidoreductase
CooT	PF10133.9	gi|227827486|ref|YP_002829266.1|	-	1.4	9.2	6.3	8.2	6.8	0.5	3.2	4	0	0	4	4	4	0	CO	dehydrogenase	accessory	protein	CooT
Clathrin_H_link	PF13838.6	gi|227827488|ref|YP_002829268.1|	-	0.046	13.6	0.0	0.076	12.9	0.0	1.3	1	0	0	1	1	1	0	Clathrin-H-link
AA_permease_2	PF13520.6	gi|227827489|ref|YP_002829269.1|	-	1.1e-26	93.6	71.2	1.4e-26	93.3	71.2	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227827489|ref|YP_002829269.1|	-	2.2e-22	79.3	61.5	2.9e-22	78.9	61.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
HTH_10	PF04967.12	gi|227827490|ref|YP_002829270.1|	-	5.6e-22	77.3	0.3	9.8e-22	76.5	0.3	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_20	PF12840.7	gi|227827490|ref|YP_002829270.1|	-	0.082	13.0	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Peptidase_M20	PF01546.28	gi|227827491|ref|YP_002829271.1|	-	2.8e-33	115.4	0.0	3.4e-33	115.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|227827491|ref|YP_002829271.1|	-	4.7e-15	55.4	0.0	1.2e-14	54.1	0.0	1.7	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
DUF1177	PF06675.11	gi|227827492|ref|YP_002829272.1|	-	1.1e-103	345.8	0.1	1.3e-103	345.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1177)
HTH_40	PF14493.6	gi|227827492|ref|YP_002829272.1|	-	0.13	12.8	0.7	0.37	11.3	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
FAD_binding_4	PF01565.23	gi|227827493|ref|YP_002829273.1|	-	1.3e-26	93.0	0.0	2.2e-26	92.2	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.19	gi|227827493|ref|YP_002829273.1|	-	0.00034	20.3	0.1	0.00066	19.4	0.1	1.4	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
ABC_tran	PF00005.27	gi|227827494|ref|YP_002829274.1|	-	3.7e-33	114.9	0.1	1e-32	113.5	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|227827494|ref|YP_002829274.1|	-	2.3e-06	27.6	0.1	0.078	12.8	0.0	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227827494|ref|YP_002829274.1|	-	0.00032	20.2	0.2	0.0012	18.3	0.2	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|227827494|ref|YP_002829274.1|	-	0.00044	20.2	0.1	0.0011	18.9	0.1	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|227827494|ref|YP_002829274.1|	-	0.0074	16.0	0.1	0.016	15.0	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|227827494|ref|YP_002829274.1|	-	0.054	13.4	0.0	0.091	12.7	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|227827494|ref|YP_002829274.1|	-	0.25	11.8	3.4	0.3	11.6	0.9	2.1	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.22	gi|227827495|ref|YP_002829275.1|	-	2.8e-16	59.8	20.4	2.8e-16	59.8	20.4	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Babuvirus_MP	PF07234.11	gi|227827495|ref|YP_002829275.1|	-	0.57	10.4	2.7	2.1	8.6	2.7	2.0	1	0	0	1	1	1	0	Movement	and	RNA	silencing	protein
BPD_transp_1	PF00528.22	gi|227827496|ref|YP_002829276.1|	-	4e-15	56.0	18.5	4e-15	56.0	18.5	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|227827497|ref|YP_002829277.1|	-	1.2e-26	94.5	3.5	2.4e-26	93.4	3.5	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|227827497|ref|YP_002829277.1|	-	2.3e-20	73.6	0.1	3.4e-20	73.0	0.1	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|227827497|ref|YP_002829277.1|	-	0.0012	18.6	0.0	0.8	9.4	0.0	3.1	2	1	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|227827497|ref|YP_002829277.1|	-	0.009	15.4	0.1	0.18	11.2	0.0	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
BRE	PF06113.12	gi|227827497|ref|YP_002829277.1|	-	0.074	11.9	0.1	0.13	11.1	0.1	1.3	1	0	0	1	1	1	0	Brain	and	reproductive	organ-expressed	protein	(BRE)
FtsX	PF02687.21	gi|227827497|ref|YP_002829277.1|	-	0.1	13.1	2.7	0.077	13.5	0.9	1.7	2	0	0	2	2	2	0	FtsX-like	permease	family
Sigma_reg_N	PF13800.6	gi|227827497|ref|YP_002829277.1|	-	0.31	11.3	5.4	1.1	9.6	1.3	2.6	1	1	1	2	2	2	0	Sigma	factor	regulator	N-terminal
DDE_Tnp_IS240	PF13610.6	gi|227827498|ref|YP_002829278.1|	-	0.00011	22.5	1.0	0.00017	21.9	1.0	1.3	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227827498|ref|YP_002829278.1|	-	0.022	14.2	0.1	0.039	13.4	0.1	1.3	1	0	0	1	1	1	0	Transposase	IS66	family
FAD_binding_2	PF00890.24	gi|227827499|ref|YP_002829279.1|	-	9.6e-72	242.3	0.0	3.5e-71	240.5	0.0	1.7	1	1	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|227827499|ref|YP_002829279.1|	-	2.1e-08	34.2	0.2	1.1e-06	28.5	0.2	2.2	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Succ_DH_flav_C	PF02910.20	gi|227827499|ref|YP_002829279.1|	-	1.3e-07	31.6	0.0	5.8e-06	26.3	0.0	2.3	1	1	1	2	2	2	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.14	gi|227827499|ref|YP_002829279.1|	-	5.5e-07	29.1	0.3	0.013	14.8	0.2	2.8	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227827499|ref|YP_002829279.1|	-	5.6e-05	22.4	0.0	0.00041	19.5	0.0	2.0	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|227827499|ref|YP_002829279.1|	-	0.00015	20.6	0.3	0.0043	15.8	0.1	2.7	2	1	0	2	2	2	1	HI0933-like	protein
NAD_binding_9	PF13454.6	gi|227827499|ref|YP_002829279.1|	-	0.024	14.6	0.0	0.72	9.8	0.0	2.6	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|227827499|ref|YP_002829279.1|	-	0.047	13.0	0.1	0.67	9.2	0.0	2.4	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF4754	PF15946.5	gi|227827499|ref|YP_002829279.1|	-	0.12	12.7	0.0	1.1	9.6	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4754)
RNA_pol_L	PF01193.24	gi|227827499|ref|YP_002829279.1|	-	0.17	11.3	0.0	0.32	10.5	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
QRPTase_C	PF01729.19	gi|227827500|ref|YP_002829280.1|	-	2.1e-59	200.1	0.0	2.7e-59	199.8	0.0	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|227827500|ref|YP_002829280.1|	-	3.2e-16	59.2	0.0	6.7e-16	58.1	0.0	1.6	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
NanE	PF04131.14	gi|227827500|ref|YP_002829280.1|	-	0.036	13.2	0.1	0.63	9.2	0.0	2.2	1	1	1	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
PRAI	PF00697.22	gi|227827500|ref|YP_002829280.1|	-	0.11	12.2	0.1	0.23	11.2	0.1	1.4	1	1	0	1	1	1	0	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
DUF302	PF03625.14	gi|227827501|ref|YP_002829281.1|	-	6.3e-17	61.2	0.0	1.2e-16	60.4	0.0	1.4	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF302
PadR	PF03551.14	gi|227827502|ref|YP_002829282.1|	-	5.5e-13	48.7	0.6	7.4e-13	48.3	0.6	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_12	PF08461.10	gi|227827502|ref|YP_002829282.1|	-	0.012	15.5	0.6	0.021	14.8	0.6	1.5	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
RTP	PF02334.16	gi|227827502|ref|YP_002829282.1|	-	0.021	15.5	0.4	0.026	15.1	0.4	1.2	1	0	0	1	1	1	0	Replication	terminator	protein
TrmB	PF01978.19	gi|227827502|ref|YP_002829282.1|	-	0.042	13.7	0.1	0.064	13.2	0.1	1.4	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MFS_1	PF07690.16	gi|227827503|ref|YP_002829283.1|	-	1.2e-33	116.5	50.6	3.6e-20	72.2	26.0	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
GDE_C	PF06202.14	gi|227827504|ref|YP_002829284.1|	-	2.6e-109	365.7	0.0	3.5e-109	365.2	0.0	1.1	1	0	0	1	1	1	1	Amylo-alpha-1,6-glucosidase
GDE_N	PF12439.8	gi|227827504|ref|YP_002829284.1|	-	3.5e-49	167.2	1.9	4.9e-49	166.7	1.9	1.2	1	0	0	1	1	1	1	Glycogen	debranching	enzyme	N	terminal
DUF608	PF04685.13	gi|227827504|ref|YP_002829284.1|	-	2.4e-06	27.0	0.2	3.6e-06	26.4	0.2	1.2	1	0	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydro_100	PF12899.7	gi|227827504|ref|YP_002829284.1|	-	4.8e-05	22.2	0.2	0.25	10.0	0.0	2.8	3	0	0	3	3	3	2	Alkaline	and	neutral	invertase
Bac_rhamnosid6H	PF17389.2	gi|227827504|ref|YP_002829284.1|	-	0.025	13.9	0.1	0.037	13.3	0.1	1.2	1	0	0	1	1	1	0	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Glyco_hydro_15	PF00723.21	gi|227827505|ref|YP_002829285.1|	-	4.1e-17	62.1	0.1	3.4e-13	49.2	0.3	2.4	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
Glucodextran_N	PF09137.11	gi|227827505|ref|YP_002829285.1|	-	0.011	15.3	0.0	0.018	14.6	0.0	1.2	1	0	0	1	1	1	0	Glucodextranase,	domain	N
NTP_transferase	PF00483.23	gi|227827506|ref|YP_002829286.1|	-	2.5e-36	125.5	0.0	3.6e-36	125.0	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
DUF4954	PF16314.5	gi|227827506|ref|YP_002829286.1|	-	1.5e-08	33.3	2.2	1.5e-08	33.3	2.2	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4954)
Hexapep	PF00132.24	gi|227827506|ref|YP_002829286.1|	-	4.3e-07	29.4	11.6	0.12	12.2	0.2	4.6	3	1	1	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|227827506|ref|YP_002829286.1|	-	0.02	15.2	0.0	0.043	14.2	0.0	1.6	2	0	0	2	2	2	0	MobA-like	NTP	transferase	domain
Fucokinase	PF07959.12	gi|227827506|ref|YP_002829286.1|	-	0.25	10.3	0.4	7.4	5.4	0.2	2.1	1	1	1	2	2	2	0	L-fucokinase
Glyco_hydro_57	PF03065.15	gi|227827507|ref|YP_002829287.1|	-	2e-74	250.7	7.2	3.4e-74	249.9	7.2	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
Polysacc_deac_1	PF01522.21	gi|227827507|ref|YP_002829287.1|	-	0.0017	18.3	0.1	0.0044	16.9	0.0	1.7	2	0	0	2	2	2	1	Polysaccharide	deacetylase
Glycos_transf_1	PF00534.20	gi|227827508|ref|YP_002829288.1|	-	1.4e-30	106.1	0.0	2.7e-30	105.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|227827508|ref|YP_002829288.1|	-	1.9e-27	96.6	0.1	2.7e-27	96.0	0.1	1.2	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_1_4	PF13692.6	gi|227827508|ref|YP_002829288.1|	-	1.7e-22	80.3	0.0	5.3e-22	78.7	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227827508|ref|YP_002829288.1|	-	3.6e-10	40.1	2.0	1.5e-05	25.1	0.1	2.5	2	0	0	2	2	2	2	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|227827508|ref|YP_002829288.1|	-	2.7e-05	24.7	0.2	0.00016	22.1	0.0	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|227827508|ref|YP_002829288.1|	-	0.00068	20.0	0.1	0.012	16.0	0.1	2.4	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
RIX1	PF08167.12	gi|227827509|ref|YP_002829289.1|	-	0.029	14.1	0.1	0.7	9.6	0.0	2.3	2	0	0	2	2	2	0	rRNA	processing/ribosome	biogenesis
DAO	PF01266.24	gi|227827510|ref|YP_002829290.1|	-	1.2e-46	160.0	0.0	1.4e-46	159.8	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|227827510|ref|YP_002829290.1|	-	6.7e-05	23.0	0.7	0.00016	21.8	0.4	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|227827510|ref|YP_002829290.1|	-	0.00011	21.5	0.1	0.0029	16.9	0.1	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|227827510|ref|YP_002829290.1|	-	0.009	15.3	0.3	0.015	14.5	0.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|227827510|ref|YP_002829290.1|	-	0.032	13.5	1.2	0.066	12.4	1.2	1.5	1	0	0	1	1	1	0	Thi4	family
Trp_halogenase	PF04820.14	gi|227827510|ref|YP_002829290.1|	-	0.055	12.3	0.8	2.7	6.8	0.7	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
FAD_binding_2	PF00890.24	gi|227827510|ref|YP_002829290.1|	-	0.22	10.6	0.5	0.84	8.6	1.1	1.6	2	0	0	2	2	2	0	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|227827510|ref|YP_002829290.1|	-	1.5	8.0	4.7	0.83	8.8	2.4	1.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HHH_9	PF17674.1	gi|227827511|ref|YP_002829291.1|	-	0.033	15.1	0.4	0.15	13.0	0.4	1.8	1	1	0	1	1	1	0	HHH	domain
HARE-HTH	PF05066.13	gi|227827511|ref|YP_002829291.1|	-	0.17	12.3	0.7	11	6.5	0.0	2.1	2	0	0	2	2	2	0	HB1,	ASXL,	restriction	endonuclease	HTH	domain
PIN	PF01850.21	gi|227827512|ref|YP_002829292.1|	-	3.2e-15	56.7	0.6	3.7e-15	56.5	0.6	1.0	1	0	0	1	1	1	1	PIN	domain
HTH_23	PF13384.6	gi|227827513|ref|YP_002829293.1|	-	2.5e-09	36.6	0.0	4.3e-09	35.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|227827513|ref|YP_002829293.1|	-	8.5e-09	35.3	0.0	1.3e-08	34.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|227827513|ref|YP_002829293.1|	-	2.1e-08	34.1	0.2	7.9e-08	32.3	0.0	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_32	PF13565.6	gi|227827513|ref|YP_002829293.1|	-	3.9e-08	33.8	0.4	8.3e-08	32.7	0.4	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|227827513|ref|YP_002829293.1|	-	8e-08	31.8	1.4	1e-07	31.5	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
LZ_Tnp_IS481	PF13011.6	gi|227827513|ref|YP_002829293.1|	-	1e-05	26.0	0.0	2e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
Terminase_5	PF06056.12	gi|227827513|ref|YP_002829293.1|	-	0.0013	18.6	0.0	0.0036	17.2	0.0	1.7	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
Sigma70_r4_2	PF08281.12	gi|227827513|ref|YP_002829293.1|	-	0.0053	16.4	0.0	0.01	15.5	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
DUF1955	PF09205.10	gi|227827514|ref|YP_002829294.1|	-	4.8e-73	244.2	11.7	5.4e-73	244.0	11.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1955)
RST	PF12174.8	gi|227827514|ref|YP_002829294.1|	-	0.094	12.7	0.1	0.21	11.5	0.1	1.6	1	0	0	1	1	1	0	RCD1-SRO-TAF4	(RST)	plant	domain
PK	PF00224.21	gi|227827515|ref|YP_002829295.1|	-	4.7e-82	275.7	2.5	7.3e-82	275.0	2.5	1.3	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|227827515|ref|YP_002829295.1|	-	1.9e-22	79.7	0.2	2.4e-21	76.1	0.1	2.6	3	0	0	3	3	3	1	Pyruvate	kinase,	alpha/beta	domain
Cpn10	PF00166.21	gi|227827515|ref|YP_002829295.1|	-	0.014	15.5	0.0	0.059	13.4	0.0	2.1	1	0	0	1	1	1	0	Chaperonin	10	Kd	subunit
HpcH_HpaI	PF03328.14	gi|227827515|ref|YP_002829295.1|	-	0.016	14.4	0.4	0.032	13.3	0.1	1.7	2	0	0	2	2	2	0	HpcH/HpaI	aldolase/citrate	lyase	family
DUF202	PF02656.15	gi|227827516|ref|YP_002829296.1|	-	8.1e-23	80.7	1.9	9.1e-22	77.3	0.3	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF202)
SdpI	PF13630.6	gi|227827516|ref|YP_002829296.1|	-	0.0038	17.3	3.6	0.014	15.6	0.1	2.1	1	1	1	2	2	2	1	SdpI/YhfL	protein	family
SfLAP	PF11139.8	gi|227827516|ref|YP_002829296.1|	-	0.01	15.3	0.6	0.014	14.8	0.5	1.4	1	1	0	1	1	1	0	Sap,	sulfolipid-1-addressing	protein
CrgA	PF06781.12	gi|227827516|ref|YP_002829296.1|	-	0.13	12.3	3.7	2	8.6	0.8	2.4	2	1	0	2	2	2	0	Cell	division	protein	CrgA
DUF981	PF06168.11	gi|227827516|ref|YP_002829296.1|	-	0.21	11.5	8.2	0.53	10.2	8.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF981)
DHHC	PF01529.20	gi|227827516|ref|YP_002829296.1|	-	0.39	10.8	6.4	0.076	13.1	2.0	1.8	1	1	1	2	2	2	0	DHHC	palmitoyltransferase
YtpI	PF14007.6	gi|227827516|ref|YP_002829296.1|	-	1.6	9.0	11.4	0.065	13.4	2.6	2.1	1	1	1	2	2	2	0	YtpI-like	protein
MARVEL	PF01284.23	gi|227827516|ref|YP_002829296.1|	-	4	7.4	10.2	19	5.3	10.2	2.0	1	1	0	1	1	1	0	Membrane-associating	domain
DUF2207	PF09972.9	gi|227827516|ref|YP_002829296.1|	-	5.7	5.6	10.2	25	3.5	10.2	1.8	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Tetraspanin	PF00335.20	gi|227827516|ref|YP_002829296.1|	-	9.4	5.9	9.6	33	4.1	9.6	1.8	1	1	0	1	1	1	0	Tetraspanin	family
Rib_5-P_isom_A	PF06026.14	gi|227827517|ref|YP_002829297.1|	-	5.3e-44	149.9	0.2	6.9e-44	149.5	0.2	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
Sugar-bind	PF04198.13	gi|227827517|ref|YP_002829297.1|	-	0.0035	16.5	0.0	0.0048	16.1	0.0	1.2	1	0	0	1	1	1	1	Putative	sugar-binding	domain
DeoRC	PF00455.22	gi|227827517|ref|YP_002829297.1|	-	0.018	15.0	0.0	0.027	14.4	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
HMGL-like	PF00682.19	gi|227827518|ref|YP_002829298.1|	-	1.8e-72	244.1	1.9	2.7e-72	243.5	1.9	1.3	1	0	0	1	1	1	1	HMGL-like
AsnC_trans_reg	PF01037.21	gi|227827518|ref|YP_002829298.1|	-	8.1e-15	54.6	0.5	6e-14	51.8	0.2	2.5	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
AP_endonuc_2	PF01261.24	gi|227827518|ref|YP_002829298.1|	-	0.00013	21.5	0.1	0.0004	19.9	0.1	2.0	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
ACT_4	PF13291.6	gi|227827518|ref|YP_002829298.1|	-	0.0012	19.4	5.2	0.055	14.1	0.5	4.0	4	1	1	5	5	5	1	ACT	domain
NapD	PF03927.13	gi|227827518|ref|YP_002829298.1|	-	0.013	15.5	0.2	0.068	13.2	0.2	2.3	1	0	0	1	1	1	0	NapD	protein
SurA_N_2	PF13623.6	gi|227827518|ref|YP_002829298.1|	-	0.03	14.2	0.0	0.053	13.4	0.0	1.3	1	0	0	1	1	1	0	SurA	N-terminal	domain
Radical_SAM	PF04055.21	gi|227827518|ref|YP_002829298.1|	-	0.032	14.6	1.3	0.21	12.0	0.5	2.6	2	1	0	2	2	2	0	Radical	SAM	superfamily
PdxJ	PF03740.13	gi|227827518|ref|YP_002829298.1|	-	0.043	12.9	0.2	0.12	11.4	0.2	1.7	1	0	0	1	1	1	0	Pyridoxal	phosphate	biosynthesis	protein	PdxJ
CinA_KH	PF18146.1	gi|227827518|ref|YP_002829298.1|	-	0.11	12.6	0.2	3.5	7.9	0.0	3.0	2	1	1	3	3	3	0	Damage-inducible	protein	CinA	KH	domain
Ca_bind_SSO6904	PF18249.1	gi|227827519|ref|YP_002829299.1|	-	8.4e-43	144.6	5.0	9.3e-43	144.5	5.0	1.0	1	0	0	1	1	1	1	Calcium	binding	protein	SSO6904
MtrG	PF04210.13	gi|227827519|ref|YP_002829299.1|	-	0.03	14.2	0.8	0.52	10.2	0.1	2.2	1	1	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Snf7	PF03357.21	gi|227827519|ref|YP_002829299.1|	-	0.057	13.0	1.8	5	6.7	0.0	2.0	1	1	1	2	2	2	0	Snf7
Tricorn_C1	PF14684.6	gi|227827519|ref|YP_002829299.1|	-	0.086	12.9	0.1	0.12	12.5	0.1	1.4	1	1	0	1	1	1	0	Tricorn	protease	C1	domain
AA_kinase	PF00696.28	gi|227827520|ref|YP_002829300.1|	-	4.4e-26	91.9	0.2	1.8e-25	89.9	0.2	1.7	1	1	0	1	1	1	1	Amino	acid	kinase	family
T2SSE	PF00437.20	gi|227827520|ref|YP_002829300.1|	-	0.077	12.0	0.0	0.11	11.5	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Cren7	PF11520.8	gi|227827521|ref|YP_002829301.1|	-	2.4e-33	113.8	2.5	2.6e-33	113.7	2.5	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
adh_short_C2	PF13561.6	gi|227827522|ref|YP_002829302.1|	-	7.5e-37	127.1	0.0	1e-36	126.7	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227827522|ref|YP_002829302.1|	-	1.2e-34	119.5	0.0	1.5e-34	119.2	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227827522|ref|YP_002829302.1|	-	0.00057	19.8	0.0	0.00083	19.3	0.0	1.3	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.18	gi|227827522|ref|YP_002829302.1|	-	0.014	15.3	0.0	0.025	14.5	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF1776	PF08643.10	gi|227827522|ref|YP_002829302.1|	-	0.04	13.3	0.0	0.11	11.8	0.0	1.6	2	0	0	2	2	2	0	Fungal	family	of	unknown	function	(DUF1776)
F420_oxidored	PF03807.17	gi|227827522|ref|YP_002829302.1|	-	0.058	14.0	0.0	0.21	12.2	0.0	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
THF_DHG_CYH_C	PF02882.19	gi|227827522|ref|YP_002829302.1|	-	0.17	11.2	0.1	0.47	9.8	0.1	1.7	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
NAD_binding_2	PF03446.15	gi|227827523|ref|YP_002829303.1|	-	4.5e-35	121.1	0.2	7e-35	120.5	0.2	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.6	gi|227827523|ref|YP_002829303.1|	-	6.2e-27	94.3	0.0	9.3e-27	93.7	0.0	1.3	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.17	gi|227827523|ref|YP_002829303.1|	-	2.4e-09	37.6	0.7	5.3e-09	36.5	0.1	1.9	2	0	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|227827523|ref|YP_002829303.1|	-	1e-05	25.0	0.1	1.8e-05	24.2	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|227827523|ref|YP_002829303.1|	-	1.5e-05	25.1	0.1	3e-05	24.1	0.1	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|227827523|ref|YP_002829303.1|	-	0.00035	21.4	0.0	0.0007	20.4	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
IlvN	PF07991.12	gi|227827523|ref|YP_002829303.1|	-	0.0017	18.0	0.1	0.0034	17.0	0.1	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
OCD_Mu_crystall	PF02423.15	gi|227827523|ref|YP_002829303.1|	-	0.0021	17.1	0.0	0.0071	15.3	0.0	1.8	2	0	0	2	2	2	1	Ornithine	cyclodeaminase/mu-crystallin	family
3HCDH_N	PF02737.18	gi|227827523|ref|YP_002829303.1|	-	0.0052	16.7	0.0	0.011	15.7	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|227827523|ref|YP_002829303.1|	-	0.0062	16.2	0.0	0.017	14.7	0.0	1.8	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
5_3_exonuc_N	PF02739.16	gi|227827523|ref|YP_002829303.1|	-	0.0069	16.3	0.1	0.026	14.4	0.0	1.8	2	0	0	2	2	2	1	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
PDH	PF02153.17	gi|227827523|ref|YP_002829303.1|	-	0.038	13.0	0.2	0.072	12.1	0.2	1.4	1	0	0	1	1	1	0	Prephenate	dehydrogenase
bact-PGI_C	PF10432.9	gi|227827523|ref|YP_002829303.1|	-	0.052	13.6	0.0	0.13	12.3	0.0	1.6	2	0	0	2	2	2	0	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
Nup54_57_C	PF18570.1	gi|227827523|ref|YP_002829303.1|	-	0.19	11.3	0.7	0.4	10.3	0.7	1.6	1	0	0	1	1	1	0	NUP57/Nup54	C-terminal	domain
THUMP	PF02926.17	gi|227827524|ref|YP_002829304.1|	-	0.00012	22.2	0.3	0.00034	20.7	0.3	1.9	1	0	0	1	1	1	1	THUMP	domain
SRP54	PF00448.22	gi|227827525|ref|YP_002829305.1|	-	9.7e-72	240.7	0.2	1.3e-71	240.3	0.2	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|227827525|ref|YP_002829305.1|	-	2.8e-28	98.5	0.2	6.1e-26	90.9	0.0	2.6	2	0	0	2	2	2	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|227827525|ref|YP_002829305.1|	-	4.5e-16	58.8	0.8	8.1e-15	54.8	0.2	2.8	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|227827525|ref|YP_002829305.1|	-	1.1e-05	25.5	0.0	2.9e-05	24.1	0.0	1.9	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
cobW	PF02492.19	gi|227827525|ref|YP_002829305.1|	-	7.9e-05	22.3	0.2	0.00056	19.5	0.2	2.1	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|227827525|ref|YP_002829305.1|	-	0.00012	21.5	0.0	0.00022	20.6	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
ParA	PF10609.9	gi|227827525|ref|YP_002829305.1|	-	0.0004	19.9	0.0	0.00076	19.0	0.0	1.4	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MobB	PF03205.14	gi|227827525|ref|YP_002829305.1|	-	0.00065	19.6	0.1	0.007	16.3	0.1	2.2	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.6	gi|227827525|ref|YP_002829305.1|	-	0.00075	19.3	0.0	0.0023	17.7	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_31	PF13614.6	gi|227827525|ref|YP_002829305.1|	-	0.0016	18.4	0.1	0.014	15.3	0.0	2.0	1	1	0	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|227827525|ref|YP_002829305.1|	-	0.0018	17.3	0.0	0.0051	15.8	0.0	1.7	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_22	PF13401.6	gi|227827525|ref|YP_002829305.1|	-	0.004	17.4	0.0	0.015	15.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|227827525|ref|YP_002829305.1|	-	0.0055	16.9	0.0	0.014	15.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|227827525|ref|YP_002829305.1|	-	0.012	15.7	1.5	0.057	13.5	0.0	2.5	3	0	0	3	3	2	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.6	gi|227827525|ref|YP_002829305.1|	-	0.015	15.8	0.1	0.042	14.4	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|227827525|ref|YP_002829305.1|	-	0.024	14.9	0.0	0.057	13.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
6PF2K	PF01591.18	gi|227827525|ref|YP_002829305.1|	-	0.034	13.5	0.0	0.066	12.5	0.0	1.5	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA_17	PF13207.6	gi|227827525|ref|YP_002829305.1|	-	0.038	14.4	0.1	0.038	14.4	0.1	2.2	4	0	0	4	4	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|227827525|ref|YP_002829305.1|	-	0.041	13.6	0.1	0.28	11.0	0.0	2.3	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
NTPase_1	PF03266.15	gi|227827525|ref|YP_002829305.1|	-	0.067	13.1	0.3	1	9.2	0.0	2.5	2	0	0	2	2	2	0	NTPase
PFOR_II	PF17147.4	gi|227827525|ref|YP_002829305.1|	-	0.074	13.4	0.0	2.1	8.7	0.0	2.8	1	1	2	3	3	3	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
DUF373	PF04123.13	gi|227827525|ref|YP_002829305.1|	-	0.075	12.5	0.1	0.12	11.8	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
ResIII	PF04851.15	gi|227827525|ref|YP_002829305.1|	-	0.1	12.6	1.5	1.7	8.7	0.4	2.8	1	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|227827525|ref|YP_002829305.1|	-	0.12	12.7	0.0	0.32	11.4	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
CLP1_P	PF16575.5	gi|227827525|ref|YP_002829305.1|	-	0.13	12.0	0.1	6	6.6	0.0	2.4	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ArsA_ATPase	PF02374.15	gi|227827525|ref|YP_002829305.1|	-	0.27	10.4	2.0	5.9	6.0	0.1	3.0	2	1	0	3	3	3	0	Anion-transporting	ATPase
Thymidylate_kin	PF02223.17	gi|227827525|ref|YP_002829305.1|	-	0.42	10.3	2.0	1.2	8.7	0.1	2.7	4	0	0	4	4	4	0	Thymidylate	kinase
eIF-5a	PF01287.20	gi|227827526|ref|YP_002829306.1|	-	1.1e-06	28.7	0.5	2.3e-06	27.6	0.5	1.6	1	1	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.12	gi|227827526|ref|YP_002829306.1|	-	2.6e-05	24.2	0.1	5.9e-05	23.0	0.1	1.6	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	KOW-like	domain
EFP	PF01132.20	gi|227827526|ref|YP_002829306.1|	-	0.012	15.6	0.3	0.025	14.6	0.3	1.5	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	OB	domain
TP6A_N	PF04406.14	gi|227827527|ref|YP_002829307.1|	-	1e-20	73.4	0.1	1.7e-20	72.7	0.1	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
GTP_EFTU_D4	PF14578.6	gi|227827527|ref|YP_002829307.1|	-	0.063	13.2	0.1	0.13	12.1	0.1	1.5	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
Topo-VIb_trans	PF09239.11	gi|227827528|ref|YP_002829308.1|	-	1.2e-66	223.4	0.4	2.5e-66	222.4	0.4	1.5	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c_3	PF13589.6	gi|227827528|ref|YP_002829308.1|	-	3.2e-12	46.5	0.0	8e-12	45.2	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|227827528|ref|YP_002829308.1|	-	7.3e-12	45.8	0.0	1.4e-11	44.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FbpA	PF05833.11	gi|227827528|ref|YP_002829308.1|	-	7.3e-08	31.6	0.0	7.3e-08	31.6	0.0	2.1	2	0	0	2	2	2	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
Ribosomal_S13	PF00416.22	gi|227827528|ref|YP_002829308.1|	-	3.1e-05	24.3	0.4	9.9e-05	22.7	0.0	2.0	2	0	0	2	2	2	1	Ribosomal	protein	S13/S18
H2TH	PF06831.14	gi|227827528|ref|YP_002829308.1|	-	0.02	14.9	0.2	0.087	12.8	0.0	2.1	2	0	0	2	2	2	0	Formamidopyrimidine-DNA	glycosylase	H2TH	domain
DUF2357	PF09823.9	gi|227827528|ref|YP_002829308.1|	-	0.037	13.3	1.3	0.063	12.5	1.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2357)
APG17	PF04108.12	gi|227827528|ref|YP_002829308.1|	-	0.094	11.8	4.9	0.091	11.9	2.5	1.9	2	0	0	2	2	2	0	Autophagy	protein	Apg17
HSCB_C	PF07743.13	gi|227827528|ref|YP_002829308.1|	-	0.86	10.1	5.1	0.83	10.2	2.7	2.3	2	0	0	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
DS	PF01916.17	gi|227827529|ref|YP_002829309.1|	-	4.3e-99	331.4	0.0	4.9e-99	331.2	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
RtcB	PF01139.17	gi|227827530|ref|YP_002829310.1|	-	2.1e-161	537.8	0.0	2.3e-161	537.6	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
zf-C2H2_6	PF13912.6	gi|227827531|ref|YP_002829311.1|	-	0.01	15.8	0.1	0.02	14.9	0.1	1.5	1	0	0	1	1	1	0	C2H2-type	zinc	finger
BLYB	PF05289.11	gi|227827531|ref|YP_002829311.1|	-	0.026	14.8	0.7	0.029	14.6	0.7	1.1	1	0	0	1	1	1	0	Borrelia	hemolysin	accessory	protein
Ta0938	PF11494.8	gi|227827531|ref|YP_002829311.1|	-	0.028	14.7	0.4	0.043	14.1	0.4	1.4	1	1	0	1	1	1	0	Ta0938
YHS	PF04945.13	gi|227827531|ref|YP_002829311.1|	-	0.052	13.7	0.1	0.086	13.0	0.1	1.4	1	0	0	1	1	1	0	YHS	domain
zf-C2H2	PF00096.26	gi|227827531|ref|YP_002829311.1|	-	0.058	13.9	0.5	0.12	12.9	0.5	1.6	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2HC_2	PF13913.6	gi|227827531|ref|YP_002829311.1|	-	0.35	10.8	0.5	0.35	10.8	0.5	1.8	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
DEAD	PF00270.29	gi|227827532|ref|YP_002829312.1|	-	5.4e-27	94.7	0.0	1.7e-26	93.1	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|227827532|ref|YP_002829312.1|	-	1.9e-13	50.7	0.5	2.2e-11	44.1	0.0	3.5	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|227827532|ref|YP_002829312.1|	-	2.1e-08	34.3	0.0	8.8e-08	32.3	0.0	2.1	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD_assoc	PF08494.11	gi|227827532|ref|YP_002829312.1|	-	5e-06	26.5	0.0	0.17	11.6	0.0	3.2	2	1	1	3	3	3	2	DEAD/H	associated
HTH_20	PF12840.7	gi|227827532|ref|YP_002829312.1|	-	0.002	18.1	0.2	0.055	13.5	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227827532|ref|YP_002829312.1|	-	0.0022	18.1	0.0	1.7	8.9	0.0	3.6	3	0	0	3	3	3	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|227827532|ref|YP_002829312.1|	-	0.0027	17.5	0.1	0.0091	15.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
SNF2_N	PF00176.23	gi|227827532|ref|YP_002829312.1|	-	0.026	13.3	0.1	0.046	12.4	0.1	1.4	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
HTH_11	PF08279.12	gi|227827532|ref|YP_002829312.1|	-	0.052	13.5	0.2	0.54	10.2	0.1	2.9	3	0	0	3	3	3	0	HTH	domain
AAA_22	PF13401.6	gi|227827532|ref|YP_002829312.1|	-	0.092	13.0	0.2	3.1	8.1	0.2	2.8	1	1	0	1	1	1	0	AAA	domain
GP3_package	PF16677.5	gi|227827532|ref|YP_002829312.1|	-	0.11	12.6	0.1	0.45	10.7	0.0	2.0	2	0	0	2	2	2	0	DNA-packaging	protein	gp3
Alba	PF01918.21	gi|227827533|ref|YP_002829313.1|	-	5.1e-16	58.2	0.5	6.1e-16	58.0	0.5	1.1	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.8	gi|227827533|ref|YP_002829313.1|	-	0.042	13.8	0.0	0.068	13.1	0.0	1.3	1	1	0	1	1	1	0	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
Topoisom_bac	PF01131.20	gi|227827534|ref|YP_002829314.1|	-	1.3e-83	281.4	0.2	2.2e-83	280.6	0.2	1.4	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|227827534|ref|YP_002829314.1|	-	2e-24	85.8	0.4	1.4e-23	83.1	0.0	2.7	2	0	0	2	2	2	1	Toprim	domain
zf_Rg	PF17915.1	gi|227827534|ref|YP_002829314.1|	-	2.4e-15	55.6	1.8	2.4e-15	55.6	1.8	2.1	2	0	0	2	2	2	1	Reverse	gyrase	zinc	finger
DEAD	PF00270.29	gi|227827534|ref|YP_002829314.1|	-	1.8e-09	37.6	0.4	6.3e-08	32.6	0.5	3.1	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|227827534|ref|YP_002829314.1|	-	0.00034	20.7	1.0	0.0054	16.8	0.1	2.7	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
HypA	PF01155.19	gi|227827534|ref|YP_002829314.1|	-	0.00079	19.4	1.1	0.011	15.7	0.1	2.7	2	0	0	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|227827534|ref|YP_002829314.1|	-	0.014	15.5	2.3	0.4	10.8	0.8	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|227827534|ref|YP_002829314.1|	-	0.021	14.5	0.7	0.16	11.6	0.0	2.4	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
Toprim_4	PF13662.6	gi|227827534|ref|YP_002829314.1|	-	0.022	15.3	0.0	0.12	12.9	0.0	2.3	1	0	0	1	1	1	0	Toprim	domain
DUF35_N	PF12172.8	gi|227827534|ref|YP_002829314.1|	-	0.023	14.6	1.7	0.31	11.0	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
NOB1_Zn_bind	PF08772.11	gi|227827534|ref|YP_002829314.1|	-	0.081	13.1	1.0	0.8	9.9	0.1	2.6	2	0	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
AAA_22	PF13401.6	gi|227827534|ref|YP_002829314.1|	-	0.095	13.0	0.0	0.29	11.4	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
zf-ribbon_3	PF13248.6	gi|227827534|ref|YP_002829314.1|	-	0.12	11.8	7.5	1.8	8.1	1.3	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Skp1	PF01466.19	gi|227827534|ref|YP_002829314.1|	-	0.25	11.5	1.9	13	6.0	0.0	3.2	2	1	1	3	3	3	0	Skp1	family,	dimerisation	domain
OrfB_Zn_ribbon	PF07282.11	gi|227827534|ref|YP_002829314.1|	-	0.39	10.7	3.6	2.8	7.9	0.4	3.0	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF1272	PF06906.11	gi|227827534|ref|YP_002829314.1|	-	0.44	10.7	3.5	0.72	10.0	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DZR	PF12773.7	gi|227827534|ref|YP_002829314.1|	-	0.77	9.8	4.9	1.5	8.9	0.3	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_9	PF14369.6	gi|227827534|ref|YP_002829314.1|	-	1.6	9.1	6.3	1.9	8.8	1.2	2.4	2	0	0	2	2	2	0	zinc-ribbon
Anti-TRAP	PF15777.5	gi|227827534|ref|YP_002829314.1|	-	3.2	7.8	4.0	3.8	7.5	0.1	2.4	2	0	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Alba	PF01918.21	gi|227827535|ref|YP_002829315.1|	-	2e-22	78.8	0.8	2.7e-22	78.3	0.8	1.2	1	0	0	1	1	1	1	Alba
DUF3954	PF13128.6	gi|227827535|ref|YP_002829315.1|	-	0.053	13.3	0.4	0.29	11.0	0.4	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3954)
SIS	PF01380.22	gi|227827538|ref|YP_002829318.1|	-	0.07	13.0	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	SIS	domain
ResIII	PF04851.15	gi|227827539|ref|YP_002829319.1|	-	2.4e-23	83.0	0.0	6.6e-23	81.6	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|227827539|ref|YP_002829319.1|	-	1.8e-22	79.8	0.2	3.8e-22	78.7	0.1	1.6	1	1	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|227827539|ref|YP_002829319.1|	-	1.5e-21	76.8	0.9	2.1e-20	73.1	0.1	2.7	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|227827539|ref|YP_002829319.1|	-	5.2e-07	29.6	0.1	5.8e-06	26.2	0.0	2.8	3	2	1	4	4	4	1	DEAD/DEAH	box	helicase
DDE_Tnp_IS66_C	PF13817.6	gi|227827539|ref|YP_002829319.1|	-	0.00028	21.0	0.0	0.013	15.7	0.0	2.8	2	0	0	2	2	2	1	IS66	C-terminal	element
Sigma70_ECF	PF07638.11	gi|227827539|ref|YP_002829319.1|	-	0.0084	16.0	0.1	0.017	15.0	0.1	1.5	1	0	0	1	1	1	1	ECF	sigma	factor
AAA_25	PF13481.6	gi|227827539|ref|YP_002829319.1|	-	0.22	11.1	0.0	6	6.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Arg_decarbox_C	PF17944.1	gi|227827539|ref|YP_002829319.1|	-	0.81	10.3	5.0	2.2	8.9	0.1	4.0	5	0	0	5	5	5	0	Arginine	decarboxylase	C-terminal	helical	extension
Glu-tRNAGln	PF02686.15	gi|227827541|ref|YP_002829321.1|	-	5.3e-18	65.1	0.1	7.5e-18	64.6	0.1	1.2	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
RIO1	PF01163.22	gi|227827541|ref|YP_002829321.1|	-	0.013	15.1	0.1	0.018	14.6	0.1	1.3	1	0	0	1	1	1	0	RIO1	family
Amidase	PF01425.21	gi|227827542|ref|YP_002829322.1|	-	1.2e-143	479.3	0.0	1.4e-143	479.2	0.0	1.0	1	0	0	1	1	1	1	Amidase
HEPN_RiboL-PSP	PF18735.1	gi|227827542|ref|YP_002829322.1|	-	0.51	10.2	5.2	5.1	7.0	2.2	2.4	2	0	0	2	2	2	0	RiboL-PSP-HEPN
Wyosine_form	PF08608.12	gi|227827543|ref|YP_002829323.1|	-	2e-23	82.5	0.0	7.7e-23	80.6	0.0	2.1	2	0	0	2	2	2	1	Wyosine	base	formation
Radical_SAM	PF04055.21	gi|227827543|ref|YP_002829323.1|	-	2.9e-21	76.6	0.1	1.2e-20	74.6	0.0	2.0	2	1	0	2	2	2	1	Radical	SAM	superfamily
HAD	PF12710.7	gi|227827543|ref|YP_002829323.1|	-	0.13	12.6	0.0	4.4	7.7	0.0	2.3	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
CTP-dep_RFKase	PF01982.16	gi|227827544|ref|YP_002829324.1|	-	1.9e-39	134.5	0.0	2.8e-39	133.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_1	PF00126.27	gi|227827544|ref|YP_002829324.1|	-	0.0028	17.6	0.0	0.0045	16.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Crp_2	PF13545.6	gi|227827544|ref|YP_002829324.1|	-	0.0059	16.6	0.1	0.013	15.5	0.1	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF4364	PF14277.6	gi|227827544|ref|YP_002829324.1|	-	0.0071	16.1	0.1	0.015	15.0	0.1	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4364)
MazE_antitoxin	PF04014.18	gi|227827544|ref|YP_002829324.1|	-	0.023	14.7	0.7	0.14	12.2	0.0	2.5	2	1	0	2	2	2	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
HxlR	PF01638.17	gi|227827544|ref|YP_002829324.1|	-	0.034	14.0	0.0	0.055	13.3	0.0	1.4	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_45	PF14947.6	gi|227827544|ref|YP_002829324.1|	-	0.048	13.7	0.0	0.077	13.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|227827544|ref|YP_002829324.1|	-	0.08	12.9	0.0	0.2	11.6	0.0	1.7	2	0	0	2	2	2	0	MarR	family
DUF357	PF04010.13	gi|227827545|ref|YP_002829325.1|	-	1.9e-15	56.7	0.6	4.4e-15	55.5	0.6	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
CTP_transf_like	PF01467.26	gi|227827545|ref|YP_002829325.1|	-	9.5e-13	48.6	0.1	2.2e-12	47.4	0.0	1.6	2	0	0	2	2	2	1	Cytidylyltransferase-like
Phage_Mu_Gam	PF07352.12	gi|227827545|ref|YP_002829325.1|	-	0.052	13.5	0.5	1.2	9.1	0.0	2.4	2	0	0	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
RPN7	PF10602.9	gi|227827545|ref|YP_002829325.1|	-	0.09	12.5	0.5	0.16	11.7	0.5	1.3	1	0	0	1	1	1	0	26S	proteasome	subunit	RPN7
FAD_syn	PF06574.12	gi|227827545|ref|YP_002829325.1|	-	0.15	11.9	0.0	0.64	9.9	0.0	1.9	2	0	0	2	2	2	0	FAD	synthetase
TP_methylase	PF00590.20	gi|227827546|ref|YP_002829326.1|	-	3.1e-21	76.3	0.0	4.1e-21	75.9	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Metallophos	PF00149.28	gi|227827547|ref|YP_002829327.1|	-	1.3e-08	35.6	0.1	1.8e-08	35.1	0.1	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|227827547|ref|YP_002829327.1|	-	1.2e-05	25.6	0.0	2.1e-05	24.8	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Ribosomal_L4	PF00573.22	gi|227827547|ref|YP_002829327.1|	-	0.0063	16.2	0.1	0.0095	15.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Cpn60_TCP1	PF00118.24	gi|227827547|ref|YP_002829327.1|	-	0.075	11.6	0.1	0.088	11.4	0.1	1.2	1	0	0	1	1	1	0	TCP-1/cpn60	chaperonin	family
Hydant_A_N	PF05378.13	gi|227827547|ref|YP_002829327.1|	-	0.082	12.6	0.1	0.17	11.6	0.1	1.4	1	1	0	1	1	1	0	Hydantoinase/oxoprolinase	N-terminal	region
TBP	PF00352.21	gi|227827548|ref|YP_002829328.1|	-	8e-58	192.4	0.2	7e-30	102.8	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|227827548|ref|YP_002829328.1|	-	1.6e-08	34.6	0.0	0.0033	17.5	0.0	2.5	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
DUF155	PF02582.14	gi|227827548|ref|YP_002829328.1|	-	0.013	15.6	0.2	1.7	8.7	0.1	2.4	2	0	0	2	2	2	0	Uncharacterised	ACR,	YagE	family	COG1723
RTT107_BRCT_5	PF16770.5	gi|227827548|ref|YP_002829328.1|	-	0.021	14.7	0.3	0.25	11.2	0.2	2.0	2	0	0	2	2	2	0	Regulator	of	Ty1	transposition	protein	107	BRCT	domain
BcrAD_BadFG	PF01869.20	gi|227827549|ref|YP_002829329.1|	-	1.4e-13	51.0	0.0	2.2e-13	50.3	0.0	1.2	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
C4	PF01413.19	gi|227827549|ref|YP_002829329.1|	-	0.012	15.9	0.1	0.021	15.2	0.1	1.3	1	0	0	1	1	1	0	C-terminal	tandem	repeated	domain	in	type	4	procollagen
Hydantoinase_A	PF01968.18	gi|227827549|ref|YP_002829329.1|	-	0.03	13.6	0.0	0.063	12.5	0.0	1.6	1	1	0	1	1	1	0	Hydantoinase/oxoprolinase
Pan_kinase	PF03309.14	gi|227827549|ref|YP_002829329.1|	-	0.032	14.1	0.0	0.082	12.7	0.0	1.8	2	0	0	2	2	2	0	Type	III	pantothenate	kinase
DUF4468	PF14730.6	gi|227827549|ref|YP_002829329.1|	-	0.06	13.6	0.0	0.13	12.6	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4468)	with	TBP-like	fold
DOG1	PF14144.6	gi|227827549|ref|YP_002829329.1|	-	0.11	12.8	0.1	0.35	11.1	0.0	1.9	2	0	0	2	2	2	0	Seed	dormancy	control
DUF3658	PF12395.8	gi|227827549|ref|YP_002829329.1|	-	0.16	11.9	0.0	0.34	10.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function
DUF5622	PF18533.1	gi|227827550|ref|YP_002829330.1|	-	5e-25	87.4	4.3	5.4e-25	87.3	4.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5622)
DUF373	PF04123.13	gi|227827551|ref|YP_002829331.1|	-	6.7e-85	285.5	21.6	7.9e-85	285.3	21.6	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
HsbA	PF12296.8	gi|227827552|ref|YP_002829332.1|	-	4.4e-05	23.9	7.1	0.66	10.4	0.0	4.3	3	1	2	5	5	5	2	Hydrophobic	surface	binding	protein	A
Cluap1	PF10234.9	gi|227827552|ref|YP_002829332.1|	-	9e-05	22.0	23.7	9e-05	22.0	23.7	2.8	1	1	2	3	3	3	1	Clusterin-associated	protein-1
TMF_DNA_bd	PF12329.8	gi|227827552|ref|YP_002829332.1|	-	0.0015	18.5	16.4	0.0015	18.5	16.4	5.8	3	1	2	5	5	2	1	TATA	element	modulatory	factor	1	DNA	binding
APG6_N	PF17675.1	gi|227827552|ref|YP_002829332.1|	-	0.0036	17.8	12.2	0.0036	17.8	12.2	3.8	1	1	3	4	4	4	1	Apg6	coiled-coil	region
FliJ	PF02050.16	gi|227827552|ref|YP_002829332.1|	-	0.016	15.4	11.0	0.016	15.4	11.0	3.8	1	1	3	4	4	3	0	Flagellar	FliJ	protein
Baculo_PEP_C	PF04513.12	gi|227827552|ref|YP_002829332.1|	-	0.018	15.1	11.4	0.018	15.1	11.4	3.5	1	1	2	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ZapB	PF06005.12	gi|227827552|ref|YP_002829332.1|	-	0.025	15.0	12.4	0.025	15.0	12.4	5.3	3	1	2	5	5	5	0	Cell	division	protein	ZapB
Atg14	PF10186.9	gi|227827552|ref|YP_002829332.1|	-	0.032	13.3	60.0	0.02	14.0	29.4	3.0	1	1	2	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
TPR_MLP1_2	PF07926.12	gi|227827552|ref|YP_002829332.1|	-	0.14	12.2	56.1	1.2	9.2	16.5	4.4	1	1	1	3	3	3	0	TPR/MLP1/MLP2-like	protein
LPP	PF04728.13	gi|227827552|ref|YP_002829332.1|	-	0.17	12.3	20.6	0.19	12.1	1.2	5.6	3	2	1	4	4	4	0	Lipoprotein	leucine-zipper
Spc7	PF08317.11	gi|227827552|ref|YP_002829332.1|	-	0.18	10.7	63.3	2	7.2	19.7	3.0	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Terminase_6C	PF17289.2	gi|227827552|ref|YP_002829332.1|	-	0.21	11.7	7.8	0.71	9.9	1.2	2.4	2	1	0	2	2	2	0	Terminase	RNaseH-like	domain
DUF1664	PF07889.12	gi|227827552|ref|YP_002829332.1|	-	0.22	11.6	42.3	1	9.4	8.4	4.2	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Ocular_alb	PF02101.15	gi|227827552|ref|YP_002829332.1|	-	0.38	9.6	0.7	0.63	8.9	0.7	1.3	1	0	0	1	1	1	0	Ocular	albinism	type	1	protein
MCPsignal	PF00015.21	gi|227827552|ref|YP_002829332.1|	-	0.56	10.0	24.4	1.1	9.0	4.9	3.6	1	1	2	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
MAP65_ASE1	PF03999.12	gi|227827552|ref|YP_002829332.1|	-	0.74	8.4	54.9	0.73	8.5	15.5	2.7	1	1	2	3	3	3	0	Microtubule	associated	protein	(MAP65/ASE1	family)
DUF948	PF06103.11	gi|227827552|ref|YP_002829332.1|	-	0.77	10.1	24.4	0.63	10.3	1.5	4.3	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
UPF0242	PF06785.11	gi|227827552|ref|YP_002829332.1|	-	0.88	9.6	62.8	0.59	10.2	15.9	3.5	1	1	2	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF3450	PF11932.8	gi|227827552|ref|YP_002829332.1|	-	0.9	8.8	39.1	0.022	14.1	9.7	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
OmpH	PF03938.14	gi|227827552|ref|YP_002829332.1|	-	1	9.7	60.7	1.3	9.4	15.5	3.2	1	1	2	3	3	3	0	Outer	membrane	protein	(OmpH-like)
kleA_kleC	PF17383.2	gi|227827552|ref|YP_002829332.1|	-	1	9.7	20.3	0.93	9.9	0.8	5.0	1	1	5	6	6	6	0	Uncharacterized	KorC	regulated	protein	A
Tup_N	PF08581.10	gi|227827552|ref|YP_002829332.1|	-	1.4	9.3	47.3	0.093	13.1	9.2	5.8	1	1	2	4	4	4	0	Tup	N-terminal
T3SSipB	PF16535.5	gi|227827552|ref|YP_002829332.1|	-	1.6	9.2	25.2	0.088	13.3	3.2	2.6	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
DUF2203	PF09969.9	gi|227827552|ref|YP_002829332.1|	-	1.6	9.5	39.3	1.5	9.5	8.7	3.9	1	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
Tropomyosin_1	PF12718.7	gi|227827552|ref|YP_002829332.1|	-	1.7	8.8	62.2	6.8	6.8	28.8	3.4	1	1	2	3	3	3	0	Tropomyosin	like
TMPIT	PF07851.13	gi|227827552|ref|YP_002829332.1|	-	1.8	7.7	47.0	0.29	10.3	12.2	3.2	1	1	1	3	3	3	0	TMPIT-like	protein
EzrA	PF06160.12	gi|227827552|ref|YP_002829332.1|	-	2	6.5	59.7	2.9	5.9	17.8	2.5	1	1	1	2	2	2	0	Septation	ring	formation	regulator,	EzrA
DUF4201	PF13870.6	gi|227827552|ref|YP_002829332.1|	-	2.1	8.1	64.8	0.77	9.5	17.3	4.1	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4201)
DUF3584	PF12128.8	gi|227827552|ref|YP_002829332.1|	-	2.1	5.7	47.0	4.1	4.8	47.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
KASH_CCD	PF14662.6	gi|227827552|ref|YP_002829332.1|	-	2.4	7.9	65.8	0.82	9.5	37.4	3.1	1	1	2	3	3	3	0	Coiled-coil	region	of	CCDC155	or	KASH
Laminin_I	PF06008.14	gi|227827552|ref|YP_002829332.1|	-	2.6	7.7	47.8	3.9	7.1	30.0	2.2	1	1	1	2	2	2	0	Laminin	Domain	I
HemX	PF04375.14	gi|227827552|ref|YP_002829332.1|	-	3.1	7.0	33.8	0.39	10.0	6.7	4.0	1	1	3	4	4	4	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
ATG16	PF08614.11	gi|227827552|ref|YP_002829332.1|	-	3.5	7.8	55.9	0.97	9.6	15.3	3.6	1	1	3	4	4	4	0	Autophagy	protein	16	(ATG16)
MbeD_MobD	PF04899.12	gi|227827552|ref|YP_002829332.1|	-	5.7	7.1	9.8	2	8.6	0.1	4.0	3	1	2	5	5	5	0	MbeD/MobD	like
Nup88	PF10168.9	gi|227827552|ref|YP_002829332.1|	-	5.9	4.6	54.1	4	5.1	36.9	2.1	1	1	1	2	2	2	0	Nuclear	pore	component
Sec34	PF04136.15	gi|227827552|ref|YP_002829332.1|	-	5.9	6.7	37.2	0.7	9.8	7.7	4.2	1	1	1	3	3	3	0	Sec34-like	family
COG2	PF06148.11	gi|227827552|ref|YP_002829332.1|	-	6.8	6.8	39.4	0.35	10.9	1.5	4.6	1	1	3	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
MAD	PF05557.13	gi|227827552|ref|YP_002829332.1|	-	8	4.7	62.9	9.8	4.4	37.6	2.2	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
CALCOCO1	PF07888.11	gi|227827552|ref|YP_002829332.1|	-	8	5.2	51.0	4.9	5.9	45.6	2.1	1	1	1	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
ApoO	PF09769.9	gi|227827552|ref|YP_002829332.1|	-	9.6	6.2	12.5	23	5.0	2.1	3.7	1	1	1	2	2	2	0	Apolipoprotein	O
Gar1	PF04410.14	gi|227827553|ref|YP_002829333.1|	-	1.5e-07	31.3	0.2	1.7e-07	31.1	0.2	1.1	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
PRC	PF05239.16	gi|227827553|ref|YP_002829333.1|	-	0.00038	20.5	0.5	0.00058	19.9	0.1	1.6	2	0	0	2	2	2	1	PRC-barrel	domain
PUA_3	PF17785.1	gi|227827553|ref|YP_002829333.1|	-	0.067	13.0	0.0	0.31	10.9	0.0	1.9	1	1	1	2	2	2	0	PUA-like	domain
TFIIB	PF00382.19	gi|227827554|ref|YP_002829334.1|	-	2.9e-21	75.3	0.0	1.6e-11	44.1	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|227827554|ref|YP_002829334.1|	-	2e-17	62.4	2.2	3.1e-17	61.8	2.2	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Lar_restr_allev	PF14354.6	gi|227827554|ref|YP_002829334.1|	-	0.002	18.4	0.7	0.0039	17.5	0.7	1.5	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Sigma70_r4	PF04545.16	gi|227827554|ref|YP_002829334.1|	-	0.0038	16.7	0.0	0.0079	15.7	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
Prim_Zn_Ribbon	PF08273.12	gi|227827554|ref|YP_002829334.1|	-	0.0093	16.2	0.3	0.017	15.4	0.3	1.4	1	0	0	1	1	1	1	Zinc-binding	domain	of	primase-helicase
zinc_ribbon_2	PF13240.6	gi|227827554|ref|YP_002829334.1|	-	0.021	14.5	5.6	0.14	11.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|227827554|ref|YP_002829334.1|	-	0.026	13.9	2.5	2.1	7.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Ntox8	PF15545.6	gi|227827554|ref|YP_002829334.1|	-	0.027	14.6	0.1	2.2	8.4	0.1	2.4	2	0	0	2	2	2	0	Bacterial	toxin	8
Elf1	PF05129.13	gi|227827554|ref|YP_002829334.1|	-	0.032	14.3	0.4	0.082	13.0	0.4	1.7	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-RRN7	PF11781.8	gi|227827554|ref|YP_002829334.1|	-	0.034	13.8	1.0	0.066	12.9	1.0	1.5	1	1	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Sigma70_r4_2	PF08281.12	gi|227827554|ref|YP_002829334.1|	-	0.074	12.7	0.0	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
Ribosomal_S27e	PF01667.17	gi|227827554|ref|YP_002829334.1|	-	0.094	12.4	0.5	0.16	11.7	0.5	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
Zn_Tnp_IS1595	PF12760.7	gi|227827554|ref|YP_002829334.1|	-	0.1	12.6	0.2	0.18	11.8	0.2	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|227827554|ref|YP_002829334.1|	-	0.11	12.6	3.3	0.77	9.9	3.3	2.4	1	1	0	1	1	1	0	Acetyl-coA	carboxylase	zinc	finger	domain
OrfB_Zn_ribbon	PF07282.11	gi|227827554|ref|YP_002829334.1|	-	0.16	11.9	0.3	0.29	11.1	0.3	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.10	gi|227827554|ref|YP_002829334.1|	-	0.25	11.1	3.7	2.7	7.8	0.3	2.5	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
DUF2089	PF09862.9	gi|227827554|ref|YP_002829334.1|	-	0.53	10.3	2.8	0.73	9.9	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2089)
RNA_pol_Rpc34	PF05158.12	gi|227827555|ref|YP_002829335.1|	-	1.3e-09	37.9	4.2	1.5e-06	27.8	2.6	2.0	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
HTH_24	PF13412.6	gi|227827555|ref|YP_002829335.1|	-	6.1e-06	25.7	1.0	8.7e-05	22.0	0.3	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
B-block_TFIIIC	PF04182.12	gi|227827555|ref|YP_002829335.1|	-	8.3e-05	22.7	0.3	0.00012	22.1	0.3	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.22	gi|227827555|ref|YP_002829335.1|	-	0.0005	19.9	0.1	0.00095	19.1	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_3	PF01381.22	gi|227827555|ref|YP_002829335.1|	-	0.0011	18.9	0.9	0.0048	16.9	0.2	2.2	3	0	0	3	3	3	1	Helix-turn-helix
MarR_2	PF12802.7	gi|227827555|ref|YP_002829335.1|	-	0.0016	18.3	0.0	0.0049	16.7	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|227827555|ref|YP_002829335.1|	-	0.0049	16.8	0.0	0.0098	15.9	0.0	1.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
RPA_C	PF08784.11	gi|227827555|ref|YP_002829335.1|	-	0.013	16.1	0.1	0.019	15.6	0.1	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
TFIIE_alpha	PF02002.17	gi|227827555|ref|YP_002829335.1|	-	0.017	15.0	0.1	0.022	14.6	0.1	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
PaRep2b	PF07775.11	gi|227827555|ref|YP_002829335.1|	-	0.041	12.4	0.1	0.046	12.2	0.1	1.0	1	0	0	1	1	1	0	PaRep2b	protein
TrmB	PF01978.19	gi|227827555|ref|YP_002829335.1|	-	0.055	13.4	0.2	0.094	12.6	0.2	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
RepC	PF06504.11	gi|227827555|ref|YP_002829335.1|	-	0.057	12.6	0.1	0.076	12.2	0.1	1.2	1	0	0	1	1	1	0	Replication	protein	C	(RepC)
HTH_19	PF12844.7	gi|227827555|ref|YP_002829335.1|	-	0.094	12.7	0.4	0.17	11.9	0.4	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
TRM	PF02005.16	gi|227827556|ref|YP_002829336.1|	-	4.4e-94	315.8	0.0	4.9e-94	315.6	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
zf-CCHC_5	PF14787.6	gi|227827556|ref|YP_002829336.1|	-	0.38	10.5	1.5	1.1	9.0	1.5	1.8	1	0	0	1	1	1	0	GAG-polyprotein	viral	zinc-finger
ShK	PF01549.24	gi|227827556|ref|YP_002829336.1|	-	1	9.9	4.8	2.1	9.0	4.8	1.5	1	0	0	1	1	1	0	ShK	domain-like
zf-ribbon_3	PF13248.6	gi|227827556|ref|YP_002829336.1|	-	8.7	5.9	8.5	8e+02	-0.3	8.6	2.4	1	1	0	1	1	1	0	zinc-ribbon	domain
HTH_3	PF01381.22	gi|227827557|ref|YP_002829337.1|	-	1.6e-11	44.1	0.1	8e-11	41.8	0.0	2.2	3	0	0	3	3	2	1	Helix-turn-helix
HTH_31	PF13560.6	gi|227827557|ref|YP_002829337.1|	-	2.5e-06	27.7	0.0	6.2e-06	26.5	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|227827557|ref|YP_002829337.1|	-	0.00012	22.1	0.6	0.00067	19.6	0.0	2.6	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|227827557|ref|YP_002829337.1|	-	0.00019	21.1	0.0	0.003	17.3	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
MerR	PF00376.23	gi|227827557|ref|YP_002829337.1|	-	0.00047	19.9	0.0	0.0016	18.2	0.0	2.0	1	0	0	1	1	1	1	MerR	family	regulatory	protein
HTH_25	PF13413.6	gi|227827557|ref|YP_002829337.1|	-	0.0027	17.5	0.1	0.087	12.7	0.0	2.9	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|227827557|ref|YP_002829337.1|	-	0.0079	16.4	0.0	0.024	14.8	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
PASTA	PF03793.19	gi|227827557|ref|YP_002829337.1|	-	0.013	15.4	0.3	0.13	12.2	0.1	2.5	2	0	0	2	2	2	0	PASTA	domain
HTH_6	PF01418.17	gi|227827557|ref|YP_002829337.1|	-	0.015	15.3	0.0	0.11	12.5	0.0	2.4	3	0	0	3	3	3	0	Helix-turn-helix	domain,	rpiR	family
HTH_22	PF13309.6	gi|227827557|ref|YP_002829337.1|	-	0.021	14.9	0.0	0.12	12.4	0.0	2.3	2	0	0	2	2	2	0	HTH	domain
HTH_7	PF02796.15	gi|227827557|ref|YP_002829337.1|	-	0.031	14.4	0.6	0.16	12.1	0.0	2.5	4	0	0	4	4	4	0	Helix-turn-helix	domain	of	resolvase
GP3_package	PF16677.5	gi|227827557|ref|YP_002829337.1|	-	0.032	14.4	0.0	0.093	12.9	0.0	1.8	1	0	0	1	1	1	0	DNA-packaging	protein	gp3
HTH_29	PF13551.6	gi|227827557|ref|YP_002829337.1|	-	0.05	13.6	0.0	0.13	12.3	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn	helix
MerR_1	PF13411.6	gi|227827557|ref|YP_002829337.1|	-	0.072	13.2	0.2	0.68	10.1	0.0	2.7	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_26	PF13443.6	gi|227827557|ref|YP_002829337.1|	-	0.1	13.0	0.0	0.35	11.3	0.0	1.9	2	0	0	2	2	1	0	Cro/C1-type	HTH	DNA-binding	domain
DUF61	PF01886.16	gi|227827558|ref|YP_002829338.1|	-	3e-24	85.5	0.3	3.5e-24	85.3	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF61
Fibrillarin	PF01269.17	gi|227827559|ref|YP_002829339.1|	-	1.1e-101	338.8	0.1	1.2e-101	338.5	0.1	1.0	1	0	0	1	1	1	1	Fibrillarin
DUF1447	PF07288.11	gi|227827559|ref|YP_002829339.1|	-	0.0023	17.9	0.0	0.096	12.7	0.0	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1447)
Tudor_2	PF18104.1	gi|227827559|ref|YP_002829339.1|	-	0.025	14.2	0.6	0.38	10.5	0.1	2.8	3	0	0	3	3	3	0	Jumonji	domain-containing	protein	2A	Tudor	domain
PCMT	PF01135.19	gi|227827559|ref|YP_002829339.1|	-	0.087	12.6	0.1	0.19	11.5	0.0	1.5	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Nop	PF01798.18	gi|227827560|ref|YP_002829340.1|	-	3.6e-73	245.8	0.0	4.9e-73	245.4	0.0	1.2	1	0	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
RuvA_C	PF07499.13	gi|227827560|ref|YP_002829340.1|	-	0.0062	17.0	0.1	0.039	14.4	0.0	2.3	2	0	0	2	2	2	1	RuvA,	C-terminal	domain
DUF4763	PF15960.5	gi|227827560|ref|YP_002829340.1|	-	0.031	13.6	1.7	0.061	12.6	1.7	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4763)
DUF3215	PF11503.8	gi|227827560|ref|YP_002829340.1|	-	0.065	13.1	0.1	0.8	9.6	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3215)
DUF573	PF04504.14	gi|227827560|ref|YP_002829340.1|	-	0.14	12.8	0.3	2	9.1	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF573
Ribosomal_S30	PF04758.14	gi|227827561|ref|YP_002829341.1|	-	5.5e-14	52.1	6.1	6.2e-14	51.9	6.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S30
Sas10	PF09368.10	gi|227827561|ref|YP_002829341.1|	-	0.18	12.3	7.9	0.32	11.5	7.7	1.6	1	1	1	2	2	2	0	Sas10	C-terminal	domain
Asparaginase	PF00710.20	gi|227827562|ref|YP_002829342.1|	-	7.1e-60	201.8	0.2	1e-59	201.3	0.2	1.2	1	0	0	1	1	1	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|227827562|ref|YP_002829342.1|	-	2.5e-29	101.8	0.0	4.1e-28	97.9	0.0	2.2	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|227827562|ref|YP_002829342.1|	-	2.1e-19	68.6	3.8	3.9e-19	67.7	3.8	1.5	1	0	0	1	1	1	1	GatD	N-terminal	domain
Gly_reductase	PF09338.11	gi|227827562|ref|YP_002829342.1|	-	0.064	11.6	0.0	0.13	10.6	0.0	1.5	2	0	0	2	2	2	0	Glycine/sarcosine/betaine	reductase	component	B	subunits
GatB_N	PF02934.15	gi|227827563|ref|YP_002829343.1|	-	3.8e-74	249.5	0.0	6.1e-74	248.8	0.0	1.3	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|227827563|ref|YP_002829343.1|	-	1.6e-25	89.7	6.6	1.6e-25	89.7	6.6	2.4	3	0	0	3	3	3	1	GatB	domain
GAD	PF02938.14	gi|227827563|ref|YP_002829343.1|	-	9.3e-10	38.6	0.4	2.1e-08	34.3	0.0	3.0	2	1	0	3	3	3	1	GAD	domain
YqeY	PF09424.10	gi|227827563|ref|YP_002829343.1|	-	2.5e-05	24.4	2.1	5.9e-05	23.2	2.1	1.7	1	0	0	1	1	1	1	Yqey-like	protein
Ctf8	PF09696.10	gi|227827563|ref|YP_002829343.1|	-	0.047	14.0	0.2	0.39	11.1	0.0	2.3	2	0	0	2	2	2	0	Ctf8
RB_A	PF01858.17	gi|227827563|ref|YP_002829343.1|	-	0.052	13.4	0.2	0.12	12.2	0.2	1.6	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	A	domain
HTH_37	PF13744.6	gi|227827565|ref|YP_002829345.1|	-	0.0016	18.3	0.0	0.0025	17.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|227827565|ref|YP_002829345.1|	-	0.01	15.9	0.2	0.019	15.0	0.2	1.4	1	0	0	1	1	1	0	Helix-turn-helix
DUF483	PF04467.12	gi|227827565|ref|YP_002829345.1|	-	0.019	14.9	0.1	0.024	14.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF483)
UPF0175	PF03683.13	gi|227827565|ref|YP_002829345.1|	-	0.022	14.5	0.0	0.031	14.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
Ribonuc_red_lgC	PF02867.15	gi|227827566|ref|YP_002829346.1|	-	1.6e-181	604.4	0.0	2.2e-181	603.9	0.0	1.2	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|227827566|ref|YP_002829346.1|	-	2.6e-27	94.6	0.2	6.2e-27	93.4	0.2	1.7	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.16	gi|227827566|ref|YP_002829346.1|	-	6.6e-10	39.4	2.3	1.2e-09	38.7	0.8	2.3	2	0	0	2	2	2	1	ATP	cone	domain
RHH_1	PF01402.21	gi|227827567|ref|YP_002829347.1|	-	7.6e-07	28.8	0.8	7.6e-07	28.8	0.8	1.5	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|227827567|ref|YP_002829347.1|	-	0.051	13.5	1.0	0.076	13.0	1.0	1.3	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
UPF0051	PF01458.17	gi|227827568|ref|YP_002829348.1|	-	2.9e-42	144.8	0.7	4.3e-42	144.3	0.7	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|227827569|ref|YP_002829349.1|	-	4.6e-64	216.1	0.0	5.8e-64	215.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
DUF4295	PF14128.6	gi|227827569|ref|YP_002829349.1|	-	0.072	12.9	0.2	0.47	10.3	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4295)
ABC_tran	PF00005.27	gi|227827570|ref|YP_002829350.1|	-	1.6e-23	83.7	0.1	2.1e-23	83.3	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227827570|ref|YP_002829350.1|	-	1.7e-06	28.1	0.1	0.019	14.8	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227827570|ref|YP_002829350.1|	-	3.9e-05	23.2	0.2	0.00069	19.1	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227827570|ref|YP_002829350.1|	-	0.029	14.1	0.1	0.073	12.8	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|227827570|ref|YP_002829350.1|	-	0.046	13.6	0.1	0.098	12.6	0.1	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_13	PF13166.6	gi|227827570|ref|YP_002829350.1|	-	0.068	11.8	0.3	0.53	8.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|227827570|ref|YP_002829350.1|	-	0.083	12.6	0.0	0.093	12.4	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|227827570|ref|YP_002829350.1|	-	0.11	13.0	0.1	0.11	13.0	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|227827570|ref|YP_002829350.1|	-	0.11	12.9	0.3	0.39	11.2	0.3	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|227827570|ref|YP_002829350.1|	-	0.12	11.9	0.1	0.37	10.3	0.1	1.5	1	1	0	2	2	2	0	AAA	domain
MazE_antitoxin	PF04014.18	gi|227827571|ref|YP_002829351.1|	-	2.6e-08	33.6	0.1	7.7e-08	32.1	0.1	1.8	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
HSP20	PF00011.21	gi|227827572|ref|YP_002829352.1|	-	0.0099	16.0	0.3	0.13	12.4	0.3	2.3	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
PAC2	PF09754.9	gi|227827573|ref|YP_002829353.1|	-	4.9e-39	134.6	0.1	5.7e-39	134.3	0.1	1.1	1	0	0	1	1	1	1	PAC2	family
GCV_H	PF01597.19	gi|227827574|ref|YP_002829354.1|	-	2.5e-43	146.9	1.1	2.8e-43	146.7	1.1	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|227827574|ref|YP_002829354.1|	-	0.0033	17.2	0.4	0.0069	16.2	0.4	1.5	1	0	0	1	1	1	1	Biotin-requiring	enzyme
RnfC_N	PF13375.6	gi|227827574|ref|YP_002829354.1|	-	0.019	14.9	0.2	0.037	14.0	0.1	1.5	1	1	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
GCV_T	PF01571.21	gi|227827575|ref|YP_002829355.1|	-	9.7e-61	205.4	0.0	1.2e-60	205.1	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|227827575|ref|YP_002829355.1|	-	3.5e-16	58.9	0.0	5.6e-16	58.2	0.0	1.3	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
CAT_RBD	PF03123.15	gi|227827575|ref|YP_002829355.1|	-	0.095	12.7	2.5	0.1	12.6	0.0	2.1	2	0	0	2	2	2	0	CAT	RNA	binding	domain
CspB_prodomain	PF18425.1	gi|227827575|ref|YP_002829355.1|	-	0.11	12.5	0.2	0.34	10.9	0.1	1.8	2	0	0	2	2	2	0	Csp	protease	B	prodomain
GDC-P	PF02347.16	gi|227827576|ref|YP_002829356.1|	-	6.7e-116	387.6	0.0	8.4e-116	387.3	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
GDC-P	PF02347.16	gi|227827577|ref|YP_002829357.1|	-	1.3e-11	44.0	0.0	1.1e-10	40.9	0.0	2.0	2	0	0	2	2	2	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.19	gi|227827577|ref|YP_002829357.1|	-	4.8e-09	35.6	0.2	1.2e-08	34.3	0.2	1.6	1	1	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|227827577|ref|YP_002829357.1|	-	0.037	13.3	0.1	0.063	12.6	0.1	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
Peptidase_S24	PF00717.23	gi|227827578|ref|YP_002829358.1|	-	0.00042	20.2	0.2	0.00066	19.6	0.2	1.4	1	0	0	1	1	1	1	Peptidase	S24-like
TF_Zn_Ribbon	PF08271.12	gi|227827579|ref|YP_002829359.1|	-	6.5e-06	25.6	0.6	0.13	11.8	0.1	2.5	2	0	0	2	2	2	2	TFIIB	zinc-binding
FYDLN_acid	PF09538.10	gi|227827579|ref|YP_002829359.1|	-	4.2e-05	24.2	2.2	0.056	14.1	0.2	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(FYDLN_acid)
zf-NADH-PPase	PF09297.11	gi|227827579|ref|YP_002829359.1|	-	4.6e-05	23.0	0.8	0.04	13.6	0.1	2.2	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227827579|ref|YP_002829359.1|	-	9.2e-05	22.5	0.2	0.17	12.0	0.1	2.5	2	0	0	2	2	2	2	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227827579|ref|YP_002829359.1|	-	0.00012	21.7	5.2	0.047	13.4	0.5	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|227827579|ref|YP_002829359.1|	-	0.00014	21.8	0.4	0.23	11.4	0.0	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
DZR	PF12773.7	gi|227827579|ref|YP_002829359.1|	-	0.00016	21.6	0.0	0.00035	20.6	0.0	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|227827579|ref|YP_002829359.1|	-	0.00017	20.9	4.0	0.13	11.7	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|227827579|ref|YP_002829359.1|	-	0.0003	20.7	1.8	0.044	13.7	0.1	2.2	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
zinc_ribbon_5	PF13719.6	gi|227827579|ref|YP_002829359.1|	-	0.00068	19.3	1.6	0.066	13.0	0.1	2.5	2	0	0	2	2	2	1	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|227827579|ref|YP_002829359.1|	-	0.00089	18.8	1.3	0.27	10.8	0.1	2.4	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
OrfB_Zn_ribbon	PF07282.11	gi|227827579|ref|YP_002829359.1|	-	0.0011	18.9	0.4	1.6	8.7	0.0	2.3	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-ISL3	PF14690.6	gi|227827579|ref|YP_002829359.1|	-	0.0012	19.5	0.9	0.99	10.1	0.1	2.3	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
CpXC	PF14353.6	gi|227827579|ref|YP_002829359.1|	-	0.0012	18.9	0.1	0.002	18.1	0.1	1.4	1	0	0	1	1	1	1	CpXC	protein
Nudix_N_2	PF14803.6	gi|227827579|ref|YP_002829359.1|	-	0.0012	18.7	1.0	1.1	9.2	0.2	2.5	2	0	0	2	2	2	2	Nudix	N-terminal
zinc_ribbon_10	PF10058.9	gi|227827579|ref|YP_002829359.1|	-	0.0014	18.3	1.2	1.4	8.7	0.1	2.2	2	0	0	2	2	2	2	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-FPG_IleRS	PF06827.14	gi|227827579|ref|YP_002829359.1|	-	0.0035	17.2	0.5	2.5	8.0	0.1	2.4	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
DNA_ligase_ZBD	PF03119.16	gi|227827579|ref|YP_002829359.1|	-	0.0039	17.2	3.4	0.078	13.0	0.1	2.6	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF4428	PF14471.6	gi|227827579|ref|YP_002829359.1|	-	0.005	16.7	1.9	1.6	8.7	0.1	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4428)
zf_Rg	PF17915.1	gi|227827579|ref|YP_002829359.1|	-	0.0053	16.1	0.5	2.3	7.7	0.1	2.4	2	0	0	2	2	2	1	Reverse	gyrase	zinc	finger
UPF0547	PF10571.9	gi|227827579|ref|YP_002829359.1|	-	0.0058	16.7	5.7	0.18	11.9	0.8	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-RRN7	PF11781.8	gi|227827579|ref|YP_002829359.1|	-	0.0076	15.9	1.9	2.5	7.9	0.2	2.3	2	0	0	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-nanos	PF05741.13	gi|227827579|ref|YP_002829359.1|	-	0.01	16.0	0.1	6.5	7.1	0.0	2.2	2	0	0	2	2	2	0	Nanos	RNA	binding	domain
zf-Mss51	PF13824.6	gi|227827579|ref|YP_002829359.1|	-	0.011	15.9	0.6	1.2	9.3	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-3CxxC_2	PF17180.4	gi|227827579|ref|YP_002829359.1|	-	0.011	16.5	4.9	0.028	15.1	0.7	2.4	2	1	0	2	2	2	0	Zinc-binding	domain
DUF1610	PF07754.11	gi|227827579|ref|YP_002829359.1|	-	0.011	15.6	11.2	0.16	11.9	2.4	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-IS66	PF13005.7	gi|227827579|ref|YP_002829359.1|	-	0.012	16.0	1.5	0.63	10.5	2.8	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
TFIIS_C	PF01096.18	gi|227827579|ref|YP_002829359.1|	-	0.012	15.5	3.5	0.17	11.8	0.3	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Sgf11	PF08209.11	gi|227827579|ref|YP_002829359.1|	-	0.012	15.1	1.7	3.5	7.3	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF4379	PF14311.6	gi|227827579|ref|YP_002829359.1|	-	0.016	15.5	1.8	0.056	13.8	0.1	2.2	2	0	0	2	2	2	0	Probable	Zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|227827579|ref|YP_002829359.1|	-	0.016	14.8	0.5	4.2	7.1	0.1	2.5	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-3CxxC	PF13695.6	gi|227827579|ref|YP_002829359.1|	-	0.017	15.6	1.0	0.022	15.2	0.1	1.7	2	0	0	2	2	1	0	Zinc-binding	domain
HypA	PF01155.19	gi|227827579|ref|YP_002829359.1|	-	0.023	14.7	0.2	0.046	13.7	0.1	1.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|227827579|ref|YP_002829359.1|	-	0.023	14.4	2.5	4.2	7.2	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Rubredoxin	PF00301.20	gi|227827579|ref|YP_002829359.1|	-	0.026	14.5	2.8	3.2	7.9	0.2	2.4	2	0	0	2	2	2	0	Rubredoxin
Zn_ribbon_SprT	PF17283.2	gi|227827579|ref|YP_002829359.1|	-	0.032	14.2	1.9	0.54	10.2	0.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|227827579|ref|YP_002829359.1|	-	0.032	14.2	5.2	0.89	9.5	0.5	2.7	2	1	0	2	2	2	0	zinc-ribbon	domain
GcpE	PF04551.14	gi|227827579|ref|YP_002829359.1|	-	0.032	13.3	0.1	0.038	13.1	0.1	1.1	1	0	0	1	1	1	0	GcpE	protein
zf-HIT	PF04438.16	gi|227827579|ref|YP_002829359.1|	-	0.038	13.9	1.4	0.85	9.5	0.3	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
Acetone_carb_G	PF08882.11	gi|227827579|ref|YP_002829359.1|	-	0.04	14.1	0.2	3	8.0	0.0	2.5	3	0	0	3	3	2	0	Acetone	carboxylase	gamma	subunit
zf-ZPR1	PF03367.13	gi|227827579|ref|YP_002829359.1|	-	0.042	13.7	1.1	0.12	12.2	1.1	1.9	1	1	0	1	1	1	0	ZPR1	zinc-finger	domain
DUF1272	PF06906.11	gi|227827579|ref|YP_002829359.1|	-	0.057	13.5	0.5	10	6.3	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Ogr_Delta	PF04606.12	gi|227827579|ref|YP_002829359.1|	-	0.061	13.3	1.5	9.1	6.4	0.2	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Prok-RING_1	PF14446.6	gi|227827579|ref|YP_002829359.1|	-	0.07	13.1	1.2	2.5	8.1	0.1	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-LITAF-like	PF10601.9	gi|227827579|ref|YP_002829359.1|	-	0.074	13.3	0.3	15	6.0	0.1	2.2	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|227827579|ref|YP_002829359.1|	-	0.075	12.4	0.3	9.8	5.6	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Cys_rich_CPXG	PF14255.6	gi|227827579|ref|YP_002829359.1|	-	0.079	12.9	2.3	5.2	7.0	0.0	2.6	3	0	0	3	3	2	0	Cysteine-rich	CPXCG
Gin	PF10764.9	gi|227827579|ref|YP_002829359.1|	-	0.079	12.9	0.1	0.76	9.8	0.0	2.2	2	0	0	2	2	2	0	Inhibitor	of	sigma-G	Gin
A2L_zn_ribbon	PF08792.10	gi|227827579|ref|YP_002829359.1|	-	0.08	12.7	2.3	2.8	7.7	0.1	2.4	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-Di19	PF05605.12	gi|227827579|ref|YP_002829359.1|	-	0.1	12.9	0.4	16	5.8	0.1	2.2	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Trm112p	PF03966.16	gi|227827579|ref|YP_002829359.1|	-	0.12	12.9	0.3	0.45	11.1	0.3	1.9	1	1	0	1	1	1	0	Trm112p-like	protein
Elf1	PF05129.13	gi|227827579|ref|YP_002829359.1|	-	0.13	12.3	1.3	1.5	8.9	0.1	2.3	2	1	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
zinc_ribbon_9	PF14369.6	gi|227827579|ref|YP_002829359.1|	-	0.16	12.3	1.2	18	5.7	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon
zinc-ribbons_6	PF07191.12	gi|227827579|ref|YP_002829359.1|	-	0.2	11.7	1.5	2.2	8.3	1.5	2.1	1	1	1	2	2	2	0	zinc-ribbons
Nop10p	PF04135.12	gi|227827579|ref|YP_002829359.1|	-	0.21	11.7	0.5	11	6.2	0.1	2.3	2	0	0	2	2	2	0	Nucleolar	RNA-binding	protein,	Nop10p	family
zf-H2C2_2	PF13465.6	gi|227827579|ref|YP_002829359.1|	-	0.22	12.0	3.1	4.2	8.0	0.6	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
GFA	PF04828.14	gi|227827579|ref|YP_002829359.1|	-	0.28	11.6	1.8	3.2	8.1	0.1	2.3	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
YacG	PF03884.14	gi|227827579|ref|YP_002829359.1|	-	0.29	10.9	3.1	3	7.6	0.4	2.5	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
zf-C2H2	PF00096.26	gi|227827579|ref|YP_002829359.1|	-	0.34	11.5	2.4	16	6.2	0.2	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
ADK_lid	PF05191.14	gi|227827579|ref|YP_002829359.1|	-	0.5	10.4	2.8	18	5.4	0.2	2.3	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Prim_Zn_Ribbon	PF08273.12	gi|227827579|ref|YP_002829359.1|	-	0.54	10.6	3.5	17	5.8	0.1	2.4	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-RING_7	PF02591.15	gi|227827579|ref|YP_002829359.1|	-	0.7	10.1	3.7	28	5.0	0.2	3.0	3	0	0	3	3	2	0	C4-type	zinc	ribbon	domain
zf-ACC	PF17848.1	gi|227827579|ref|YP_002829359.1|	-	1.3	9.2	8.0	7.2	6.8	0.6	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Enolase_C	PF00113.22	gi|227827580|ref|YP_002829360.1|	-	4e-94	315.2	0.0	6.1e-94	314.6	0.0	1.2	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|227827580|ref|YP_002829360.1|	-	3.3e-38	130.8	0.2	4.7e-38	130.3	0.2	1.2	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|227827580|ref|YP_002829360.1|	-	0.0023	17.5	0.0	0.0035	16.9	0.0	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
DUF5084	PF16894.5	gi|227827581|ref|YP_002829361.1|	-	0.042	14.3	5.3	0.045	14.2	5.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5084)
DUF4131	PF13567.6	gi|227827581|ref|YP_002829361.1|	-	0.78	9.4	5.6	1	9.0	5.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DHHC	PF01529.20	gi|227827581|ref|YP_002829361.1|	-	1.5	8.9	3.4	2.5	8.2	3.4	1.3	1	1	0	1	1	1	0	DHHC	palmitoyltransferase
TarH	PF02203.15	gi|227827581|ref|YP_002829361.1|	-	2.8	7.9	7.1	0.13	12.2	0.9	1.8	1	1	1	2	2	2	0	Tar	ligand	binding	domain	homologue
TssN	PF17555.2	gi|227827581|ref|YP_002829361.1|	-	4.3	6.7	8.0	5.2	6.4	8.0	1.2	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
CdvA	PF18822.1	gi|227827582|ref|YP_002829362.1|	-	3.2e-39	133.6	10.7	4.9e-39	133.0	10.7	1.2	1	0	0	1	1	1	1	CdvA-like	coiled-coil	domain
Syntaxin-6_N	PF09177.11	gi|227827582|ref|YP_002829362.1|	-	0.05	14.2	1.3	0.17	12.4	1.0	2.1	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
YojJ	PF10372.9	gi|227827582|ref|YP_002829362.1|	-	0.097	12.8	1.3	1.2	9.2	0.3	2.7	3	0	0	3	3	3	0	Bacterial	membrane-spanning	protein	N-terminus
DUF1640	PF07798.11	gi|227827582|ref|YP_002829362.1|	-	0.1	12.7	5.1	0.15	12.1	5.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
Ribosomal_L19e	PF01280.20	gi|227827582|ref|YP_002829362.1|	-	0.23	11.5	3.2	0.47	10.5	1.4	2.3	3	0	0	3	3	3	0	Ribosomal	protein	L19e
Golgin_A5	PF09787.9	gi|227827582|ref|YP_002829362.1|	-	0.33	10.4	8.2	0.31	10.5	6.9	1.5	1	1	0	1	1	1	0	Golgin	subfamily	A	member	5
Fmp27_WPPW	PF10359.9	gi|227827582|ref|YP_002829362.1|	-	4.2	6.1	10.9	71	2.1	10.9	2.0	1	1	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Snf7	PF03357.21	gi|227827583|ref|YP_002829363.1|	-	5e-06	26.2	1.0	6.9e-06	25.8	0.2	1.6	2	0	0	2	2	2	1	Snf7
Baculo_PEP_C	PF04513.12	gi|227827583|ref|YP_002829363.1|	-	0.0027	17.7	0.6	0.52	10.3	0.4	2.3	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
MarR_2	PF12802.7	gi|227827583|ref|YP_002829363.1|	-	0.016	15.1	0.0	0.036	13.9	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DivIVA	PF05103.13	gi|227827583|ref|YP_002829363.1|	-	0.05	13.7	2.6	0.25	11.5	1.1	2.4	2	0	0	2	2	2	0	DivIVA	protein
HTH_27	PF13463.6	gi|227827583|ref|YP_002829363.1|	-	0.41	11.2	2.0	37	4.9	0.1	3.0	2	1	1	3	3	3	0	Winged	helix	DNA-binding	domain
AAA	PF00004.29	gi|227827584|ref|YP_002829364.1|	-	2.3e-39	134.8	0.0	1.2e-38	132.5	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.18	gi|227827584|ref|YP_002829364.1|	-	1e-10	41.5	4.3	2.6e-10	40.2	4.3	1.7	1	0	0	1	1	1	1	MIT	(microtubule	interacting	and	transport)	domain
AAA_lid_3	PF17862.1	gi|227827584|ref|YP_002829364.1|	-	1.1e-08	34.7	0.0	3.3e-08	33.2	0.0	1.8	2	0	0	2	2	1	1	AAA+	lid	domain
Vps4_C	PF09336.10	gi|227827584|ref|YP_002829364.1|	-	2.1e-07	30.9	0.4	1.1e-06	28.5	0.1	2.3	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_14	PF13173.6	gi|227827584|ref|YP_002829364.1|	-	2.2e-07	31.0	0.0	6.2e-07	29.5	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_2	PF07724.14	gi|227827584|ref|YP_002829364.1|	-	4.5e-07	30.1	0.0	1.3e-06	28.7	0.0	1.7	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
AAA_24	PF13479.6	gi|227827584|ref|YP_002829364.1|	-	2.5e-06	27.4	0.0	1.1e-05	25.2	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|227827584|ref|YP_002829364.1|	-	8.3e-06	25.6	0.0	2.8e-05	23.9	0.0	1.9	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|227827584|ref|YP_002829364.1|	-	1.2e-05	25.8	0.0	0.0013	19.2	0.0	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|227827584|ref|YP_002829364.1|	-	1.5e-05	25.1	0.8	0.00032	20.7	0.1	3.2	3	1	0	3	3	2	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|227827584|ref|YP_002829364.1|	-	2.1e-05	24.8	0.0	0.00097	19.4	0.0	2.6	1	1	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|227827584|ref|YP_002829364.1|	-	0.0006	19.1	0.1	0.0015	17.8	0.0	1.6	1	1	0	1	1	1	1	TIP49	P-loop	domain
ATPase_2	PF01637.18	gi|227827584|ref|YP_002829364.1|	-	0.00098	19.1	4.8	0.24	11.3	0.3	3.0	2	1	1	3	3	3	2	ATPase	domain	predominantly	from	Archaea
AAA_25	PF13481.6	gi|227827584|ref|YP_002829364.1|	-	0.0016	18.1	0.0	0.058	13.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|227827584|ref|YP_002829364.1|	-	0.0018	17.7	0.0	0.0041	16.5	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
TPR_1	PF00515.28	gi|227827584|ref|YP_002829364.1|	-	0.0024	17.6	0.4	0.0063	16.3	0.4	1.8	1	0	0	1	1	1	1	Tetratricopeptide	repeat
AAA_18	PF13238.6	gi|227827584|ref|YP_002829364.1|	-	0.0034	17.9	0.0	0.013	16.0	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
Bac_DnaA	PF00308.18	gi|227827584|ref|YP_002829364.1|	-	0.0042	17.0	0.0	0.0072	16.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	dnaA	protein
RNA_helicase	PF00910.22	gi|227827584|ref|YP_002829364.1|	-	0.0071	16.7	0.0	0.022	15.1	0.0	1.9	1	0	0	1	1	1	1	RNA	helicase
AAA_28	PF13521.6	gi|227827584|ref|YP_002829364.1|	-	0.0095	16.2	0.0	0.041	14.1	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|227827584|ref|YP_002829364.1|	-	0.021	14.0	0.0	0.043	13.0	0.0	1.6	1	0	0	1	1	1	0	NB-ARC	domain
Viral_helicase1	PF01443.18	gi|227827584|ref|YP_002829364.1|	-	0.022	14.5	0.0	0.04	13.7	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
ATP-synt_ab	PF00006.25	gi|227827584|ref|YP_002829364.1|	-	0.024	14.3	0.0	0.05	13.2	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
KAP_NTPase	PF07693.14	gi|227827584|ref|YP_002829364.1|	-	0.031	13.5	0.3	0.57	9.4	0.0	2.5	2	1	1	3	3	3	0	KAP	family	P-loop	domain
Zeta_toxin	PF06414.12	gi|227827584|ref|YP_002829364.1|	-	0.032	13.5	0.0	0.079	12.2	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_7	PF12775.7	gi|227827584|ref|YP_002829364.1|	-	0.034	13.7	0.0	0.099	12.1	0.0	1.8	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|227827584|ref|YP_002829364.1|	-	0.035	14.6	0.0	0.27	11.8	0.0	2.1	2	0	0	2	2	2	0	ABC	transporter
IstB_IS21	PF01695.17	gi|227827584|ref|YP_002829364.1|	-	0.035	13.8	0.0	0.066	12.9	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|227827584|ref|YP_002829364.1|	-	0.041	14.0	0.0	0.072	13.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|227827584|ref|YP_002829364.1|	-	0.042	13.9	0.0	0.25	11.3	0.0	2.1	1	1	1	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
TPR_7	PF13176.6	gi|227827584|ref|YP_002829364.1|	-	0.049	13.7	0.0	0.83	9.8	0.0	2.5	2	0	0	2	2	2	0	Tetratricopeptide	repeat
NACHT	PF05729.12	gi|227827584|ref|YP_002829364.1|	-	0.051	13.5	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
DUF815	PF05673.13	gi|227827584|ref|YP_002829364.1|	-	0.057	12.6	0.0	0.13	11.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
TPR_2	PF07719.17	gi|227827584|ref|YP_002829364.1|	-	0.058	13.5	1.3	0.12	12.5	0.2	2.2	2	0	0	2	2	1	0	Tetratricopeptide	repeat
Parvo_NS1	PF01057.17	gi|227827584|ref|YP_002829364.1|	-	0.077	12.1	0.0	0.14	11.2	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
TPR_8	PF13181.6	gi|227827584|ref|YP_002829364.1|	-	0.082	13.2	2.4	0.74	10.2	0.3	2.9	2	0	0	2	2	2	0	Tetratricopeptide	repeat
AAA_30	PF13604.6	gi|227827584|ref|YP_002829364.1|	-	0.097	12.4	0.0	0.31	10.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|227827584|ref|YP_002829364.1|	-	0.11	12.1	0.0	0.6	9.8	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Rad17	PF03215.15	gi|227827584|ref|YP_002829364.1|	-	0.12	12.2	0.1	1.2	9.0	0.0	2.4	1	1	1	2	2	2	0	Rad17	P-loop	domain
TPR_11	PF13414.6	gi|227827584|ref|YP_002829364.1|	-	0.25	11.1	0.1	0.25	11.1	0.1	1.8	2	0	0	2	2	1	0	TPR	repeat
Topoisom_bac	PF01131.20	gi|227827585|ref|YP_002829365.1|	-	2.6e-103	346.2	0.0	3.4e-103	345.9	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|227827585|ref|YP_002829365.1|	-	3.4e-14	52.9	1.3	2e-13	50.5	0.0	2.6	2	1	1	3	3	3	1	Toprim	domain
Mnd1	PF03962.15	gi|227827585|ref|YP_002829365.1|	-	0.024	14.9	0.3	13	6.1	0.0	3.5	3	0	0	3	3	3	0	Mnd1	HTH	domain
DUF4362	PF14275.6	gi|227827585|ref|YP_002829365.1|	-	0.057	13.7	0.1	0.25	11.6	0.1	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4362)
ABC_tran_Xtn	PF12848.7	gi|227827585|ref|YP_002829365.1|	-	0.065	13.3	0.4	9.6	6.3	0.0	2.6	2	0	0	2	2	2	0	ABC	transporter
RNA_pol_Rpb6	PF01192.22	gi|227827586|ref|YP_002829366.1|	-	9.5e-13	47.9	0.1	1.2e-12	47.5	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
Aminotran_5	PF00266.19	gi|227827587|ref|YP_002829367.1|	-	1.1e-28	100.2	0.0	1.4e-28	100.0	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|227827587|ref|YP_002829367.1|	-	4.6e-05	22.1	0.0	7e-05	21.5	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|227827587|ref|YP_002829367.1|	-	0.00033	20.0	0.0	0.00052	19.3	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|227827587|ref|YP_002829367.1|	-	0.01	15.1	0.0	0.02	14.2	0.0	1.5	1	0	0	1	1	1	0	Beta-eliminating	lyase
Pyridoxal_deC	PF00282.19	gi|227827587|ref|YP_002829367.1|	-	0.022	13.5	0.0	0.18	10.4	0.0	2.0	2	0	0	2	2	2	0	Pyridoxal-dependent	decarboxylase	conserved	domain
DUF684	PF05075.14	gi|227827587|ref|YP_002829367.1|	-	0.031	13.3	0.0	0.051	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF684)
Fer2_BFD	PF04324.15	gi|227827587|ref|YP_002829367.1|	-	0.046	14.1	0.6	0.42	11.0	0.2	2.6	2	0	0	2	2	2	0	BFD-like	[2Fe-2S]	binding	domain
NadA	PF02445.16	gi|227827587|ref|YP_002829367.1|	-	0.14	11.3	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	Quinolinate	synthetase	A	protein
2-Hacid_dh_C	PF02826.19	gi|227827588|ref|YP_002829368.1|	-	3e-46	157.0	0.2	5.6e-46	156.1	0.2	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|227827588|ref|YP_002829368.1|	-	4.5e-32	110.5	1.1	5.4e-32	110.3	1.1	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|227827588|ref|YP_002829368.1|	-	1.2e-09	38.6	0.5	2.6e-09	37.4	0.5	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|227827588|ref|YP_002829368.1|	-	1.2e-06	28.7	0.8	1.2e-06	28.7	0.8	1.6	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|227827588|ref|YP_002829368.1|	-	9.8e-05	21.7	1.6	0.00023	20.5	1.1	1.8	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|227827588|ref|YP_002829368.1|	-	0.0013	18.4	0.3	0.0025	17.4	0.3	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|227827588|ref|YP_002829368.1|	-	0.0033	18.0	0.2	0.01	16.4	0.2	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
DpaA_N	PF16924.5	gi|227827588|ref|YP_002829368.1|	-	0.0043	17.1	0.1	0.014	15.5	0.1	1.9	1	0	0	1	1	1	1	Dipicolinate	synthase	subunit	A	N-terminal	domain
3HCDH_N	PF02737.18	gi|227827588|ref|YP_002829368.1|	-	0.006	16.5	0.5	0.014	15.3	0.5	1.7	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
PrpR_N	PF06506.11	gi|227827588|ref|YP_002829368.1|	-	0.011	15.3	0.8	0.13	11.9	0.0	2.7	3	0	0	3	3	3	0	Propionate	catabolism	activator
DapB_N	PF01113.20	gi|227827588|ref|YP_002829368.1|	-	0.013	15.6	0.7	0.082	13.0	0.3	2.5	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
CoA_binding	PF02629.19	gi|227827588|ref|YP_002829368.1|	-	0.021	15.5	0.5	0.068	13.9	0.5	1.9	1	0	0	1	1	1	0	CoA	binding	domain
XdhC_C	PF13478.6	gi|227827588|ref|YP_002829368.1|	-	0.025	15.1	0.2	3.6	8.1	0.1	3.3	3	1	0	3	3	2	0	XdhC	Rossmann	domain
NAD_binding_7	PF13241.6	gi|227827588|ref|YP_002829368.1|	-	0.29	11.6	3.6	0.15	12.5	0.6	2.0	3	0	0	3	3	2	0	Putative	NAD(P)-binding
HhH-GPD	PF00730.25	gi|227827589|ref|YP_002829369.1|	-	0.00066	20.1	0.1	0.0011	19.3	0.1	1.4	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
DZR	PF12773.7	gi|227827591|ref|YP_002829371.1|	-	0.00074	19.5	5.6	0.15	12.1	5.2	2.2	1	1	1	2	2	2	2	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|227827591|ref|YP_002829371.1|	-	0.0016	18.3	4.9	0.025	14.5	1.6	2.2	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	1
DUF4379	PF14311.6	gi|227827591|ref|YP_002829371.1|	-	0.0098	16.2	1.3	0.0098	16.2	1.3	1.6	2	0	0	2	2	2	1	Probable	Zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|227827591|ref|YP_002829371.1|	-	0.018	15.0	9.0	6.1	6.8	1.6	3.2	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227827591|ref|YP_002829371.1|	-	0.019	15.1	4.5	0.064	13.4	3.4	2.0	2	0	0	2	2	2	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|227827591|ref|YP_002829371.1|	-	0.038	14.0	4.4	0.22	11.6	0.7	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C2HC5	PF06221.13	gi|227827591|ref|YP_002829371.1|	-	0.042	13.8	4.9	1.8	8.6	4.9	2.5	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
zf-C4_Topoisom	PF01396.19	gi|227827591|ref|YP_002829371.1|	-	0.046	13.5	7.3	0.83	9.5	0.4	3.1	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Rep_fac-A_C	PF08646.10	gi|227827591|ref|YP_002829371.1|	-	0.046	13.5	2.6	0.06	13.1	2.6	1.1	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
zf-AN1	PF01428.16	gi|227827591|ref|YP_002829371.1|	-	0.057	13.6	8.5	0.82	9.9	3.4	2.5	1	1	1	2	2	2	0	AN1-like	Zinc	finger
DUF1272	PF06906.11	gi|227827591|ref|YP_002829371.1|	-	0.06	13.4	7.4	0.33	11.1	7.4	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-BED	PF02892.15	gi|227827591|ref|YP_002829371.1|	-	0.079	13.0	11.1	1.1	9.3	0.4	3.2	1	1	2	3	3	3	0	BED	zinc	finger
zinc_ribbon_2	PF13240.6	gi|227827591|ref|YP_002829371.1|	-	0.082	12.6	0.5	0.082	12.6	0.5	3.5	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|227827591|ref|YP_002829371.1|	-	0.11	12.4	9.4	25	4.8	9.5	2.4	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-tcix	PF14952.6	gi|227827591|ref|YP_002829371.1|	-	0.11	12.1	0.4	0.11	12.1	0.4	2.4	2	1	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-ribbon_3	PF13248.6	gi|227827591|ref|YP_002829371.1|	-	0.14	11.6	0.5	0.14	11.6	0.5	3.1	2	1	0	2	2	2	0	zinc-ribbon	domain
Mu-like_Com	PF10122.9	gi|227827591|ref|YP_002829371.1|	-	0.16	11.4	7.2	1.9	8.0	0.3	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
A2L_zn_ribbon	PF08792.10	gi|227827591|ref|YP_002829371.1|	-	0.24	11.2	8.4	0.26	11.1	1.5	2.5	2	1	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|227827591|ref|YP_002829371.1|	-	0.24	10.8	5.6	1.7	8.0	0.1	2.5	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
C1_2	PF03107.16	gi|227827591|ref|YP_002829371.1|	-	0.29	11.5	9.1	1	9.7	7.2	2.3	1	1	1	2	2	2	0	C1	domain
ADK_lid	PF05191.14	gi|227827591|ref|YP_002829371.1|	-	0.39	10.7	9.5	0.59	10.2	5.5	2.3	2	1	0	2	2	2	0	Adenylate	kinase,	active	site	lid
TF_Zn_Ribbon	PF08271.12	gi|227827591|ref|YP_002829371.1|	-	0.79	9.3	10.4	2.3	7.8	0.5	3.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
zf-B_box	PF00643.24	gi|227827591|ref|YP_002829371.1|	-	0.96	9.7	9.9	4.4	7.5	5.8	2.8	2	1	0	2	2	2	0	B-box	zinc	finger
DiS_P_DiS	PF06750.13	gi|227827591|ref|YP_002829371.1|	-	1.6	8.9	5.3	9.7	6.4	0.0	2.7	2	1	0	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
zf-IS66	PF13005.7	gi|227827591|ref|YP_002829371.1|	-	1.7	9.1	0.2	1.7	9.1	0.2	3.0	2	1	1	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
zf-H2C2_2	PF13465.6	gi|227827591|ref|YP_002829371.1|	-	1.7	9.2	12.6	0.39	11.2	2.8	3.0	2	1	1	3	3	3	0	Zinc-finger	double	domain
zf-C2H2_4	PF13894.6	gi|227827591|ref|YP_002829371.1|	-	1.8	9.6	13.5	27	6.0	0.2	3.3	3	0	0	3	3	3	0	C2H2-type	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|227827591|ref|YP_002829371.1|	-	2.1	8.4	11.3	0.57	10.2	0.8	2.6	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|227827591|ref|YP_002829371.1|	-	3.9	7.4	8.8	0.88	9.5	0.5	2.7	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
FANCL_C	PF11793.8	gi|227827591|ref|YP_002829371.1|	-	7.1	6.9	9.9	3	8.1	0.3	2.6	2	1	0	2	2	2	0	FANCL	C-terminal	domain
zf-C2H2	PF00096.26	gi|227827591|ref|YP_002829371.1|	-	8.3	7.1	15.1	28	5.4	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-Di19	PF05605.12	gi|227827591|ref|YP_002829371.1|	-	9	6.7	12.0	4.9	7.5	0.4	3.1	2	1	1	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
Met_10	PF02475.16	gi|227827594|ref|YP_002829374.1|	-	0.038	13.7	0.6	0.059	13.1	0.4	1.5	1	1	0	1	1	1	0	Met-10+	like-protein
NAD_binding_8	PF13450.6	gi|227827595|ref|YP_002829375.1|	-	0.0001	22.5	0.0	0.00024	21.3	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|227827595|ref|YP_002829375.1|	-	0.0028	18.2	0.0	0.0076	16.8	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|227827595|ref|YP_002829375.1|	-	0.0042	16.7	0.1	0.01	15.4	0.1	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|227827595|ref|YP_002829375.1|	-	0.0044	16.6	0.0	0.0075	15.9	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|227827595|ref|YP_002829375.1|	-	0.0076	15.6	0.0	0.0097	15.2	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|227827595|ref|YP_002829375.1|	-	0.038	13.2	0.0	0.055	12.7	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|227827595|ref|YP_002829375.1|	-	0.11	12.4	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|227827595|ref|YP_002829375.1|	-	0.14	12.1	0.0	0.22	11.5	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.18	gi|227827595|ref|YP_002829375.1|	-	0.19	12.0	0.0	0.38	11.0	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
tRNA-synt_1	PF00133.22	gi|227827596|ref|YP_002829376.1|	-	3.6e-120	402.0	0.5	6e-119	398.0	0.5	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|227827596|ref|YP_002829376.1|	-	2.9e-31	108.5	3.9	8.6e-31	107.0	3.9	1.9	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|227827596|ref|YP_002829376.1|	-	2.2e-21	76.0	0.1	1.2e-09	37.5	0.0	3.6	3	0	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|227827596|ref|YP_002829376.1|	-	1e-05	25.1	0.2	0.0015	18.1	0.2	3.1	1	1	2	3	3	3	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|227827596|ref|YP_002829376.1|	-	0.0028	17.0	0.0	0.25	10.7	0.0	2.5	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
Ribosomal_S8	PF00410.19	gi|227827596|ref|YP_002829376.1|	-	0.04	13.9	0.7	0.13	12.2	0.7	1.8	1	0	0	1	1	1	0	Ribosomal	protein	S8
Aminotran_1_2	PF00155.21	gi|227827597|ref|YP_002829377.1|	-	3.1e-81	273.3	0.0	3.6e-81	273.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|227827597|ref|YP_002829377.1|	-	1e-09	38.2	0.0	1.5e-09	37.7	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|227827597|ref|YP_002829377.1|	-	5.9e-07	28.8	0.0	1.4e-06	27.5	0.0	1.5	2	0	0	2	2	2	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|227827597|ref|YP_002829377.1|	-	0.0011	17.6	0.0	0.0018	16.9	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|227827597|ref|YP_002829377.1|	-	0.023	14.0	0.0	0.036	13.3	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
IGPS	PF00218.21	gi|227827598|ref|YP_002829378.1|	-	3.3e-83	278.8	0.5	3.7e-83	278.6	0.5	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
His_biosynth	PF00977.21	gi|227827598|ref|YP_002829378.1|	-	5.9e-06	25.9	0.2	0.0018	17.8	0.0	2.7	1	1	2	3	3	3	2	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|227827598|ref|YP_002829378.1|	-	0.041	13.3	0.0	2	7.7	0.0	2.2	2	0	0	2	2	2	0	Nitronate	monooxygenase
ThiG	PF05690.14	gi|227827598|ref|YP_002829378.1|	-	0.073	12.4	0.0	0.55	9.5	0.0	2.1	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
TMP-TENI	PF02581.17	gi|227827598|ref|YP_002829378.1|	-	0.083	12.2	0.0	0.33	10.3	0.0	2.1	2	1	0	2	2	2	0	Thiamine	monophosphate	synthase
YAF2_RYBP	PF17219.3	gi|227827598|ref|YP_002829378.1|	-	0.16	11.6	0.0	0.26	10.9	0.0	1.3	1	0	0	1	1	1	0	Yaf2/RYBP	C-terminal	binding	motif
GATase	PF00117.28	gi|227827599|ref|YP_002829379.1|	-	7.8e-47	159.5	0.0	8.7e-47	159.4	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|227827599|ref|YP_002829379.1|	-	4.8e-14	52.6	0.0	9.6e-14	51.6	0.0	1.6	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.18	gi|227827600|ref|YP_002829380.1|	-	2.2e-96	322.4	0.0	2.7e-96	322.1	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|227827600|ref|YP_002829380.1|	-	4.7e-19	69.0	0.2	1.7e-17	63.9	0.1	3.2	3	1	0	3	3	3	1	Anthranilate	synthase	component	I,	N	terminal	region
DUF4512	PF14975.6	gi|227827600|ref|YP_002829380.1|	-	0.017	15.9	0.0	0.034	14.9	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4512)
PRAI	PF00697.22	gi|227827601|ref|YP_002829381.1|	-	2.7e-40	138.2	0.0	3e-40	138.1	0.0	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
CYTH	PF01928.21	gi|227827601|ref|YP_002829381.1|	-	0.12	12.3	0.0	0.16	11.9	0.0	1.1	1	0	0	1	1	1	0	CYTH	domain
Glycos_transf_3	PF00591.21	gi|227827602|ref|YP_002829382.1|	-	7.7e-74	248.5	0.0	1.1e-73	248.0	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|227827602|ref|YP_002829382.1|	-	2.4e-17	62.5	0.3	5.1e-17	61.5	0.3	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
Trp_syntA	PF00290.20	gi|227827603|ref|YP_002829383.1|	-	6.2e-33	113.7	0.0	7.4e-33	113.5	0.0	1.1	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|227827603|ref|YP_002829383.1|	-	6.4e-05	22.5	0.2	0.00018	21.0	0.1	1.7	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|227827603|ref|YP_002829383.1|	-	0.00017	21.1	0.1	0.00066	19.2	0.0	1.8	2	0	0	2	2	2	1	Nitronate	monooxygenase
TMP-TENI	PF02581.17	gi|227827603|ref|YP_002829383.1|	-	0.0099	15.2	0.0	0.021	14.2	0.0	1.5	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
PALP	PF00291.25	gi|227827604|ref|YP_002829384.1|	-	1.3e-41	142.9	0.0	1.7e-41	142.5	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Acylphosphatase	PF00708.18	gi|227827605|ref|YP_002829385.1|	-	5.4e-29	100.4	0.1	5.9e-29	100.3	0.1	1.0	1	0	0	1	1	1	1	Acylphosphatase
DUF2730	PF10805.8	gi|227827605|ref|YP_002829385.1|	-	0.18	11.9	0.0	0.18	11.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Inos-1-P_synth	PF01658.17	gi|227827606|ref|YP_002829386.1|	-	1.4e-29	102.5	0.0	2.4e-29	101.8	0.0	1.4	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
DAGK_cat	PF00781.24	gi|227827606|ref|YP_002829386.1|	-	0.13	11.9	0.0	0.36	10.5	0.0	1.7	2	0	0	2	2	2	0	Diacylglycerol	kinase	catalytic	domain
FYVE	PF01363.21	gi|227827607|ref|YP_002829387.1|	-	0.016	15.4	33.1	17	5.6	19.5	3.8	1	1	1	2	2	2	0	FYVE	zinc	finger
Sgf11	PF08209.11	gi|227827607|ref|YP_002829387.1|	-	0.059	12.9	1.8	0.059	12.9	1.8	5.2	3	2	3	6	6	6	0	Sgf11	(transcriptional	regulation	protein)
zf-B_box	PF00643.24	gi|227827607|ref|YP_002829387.1|	-	0.23	11.6	34.5	0.42	10.8	3.7	4.0	2	1	2	4	4	4	0	B-box	zinc	finger
zf-AN1	PF01428.16	gi|227827607|ref|YP_002829387.1|	-	0.94	9.7	28.5	0.38	11.0	6.1	3.7	2	1	2	4	4	4	0	AN1-like	Zinc	finger
Prok-RING_2	PF14445.6	gi|227827607|ref|YP_002829387.1|	-	6	7.1	23.0	1.2	9.4	5.5	2.5	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	2
zf-RING_2	PF13639.6	gi|227827607|ref|YP_002829387.1|	-	6.2	7.2	26.4	5.7	7.3	7.9	2.4	2	0	0	2	2	2	0	Ring	finger	domain
PPDK_N	PF01326.19	gi|227827608|ref|YP_002829388.1|	-	8.1e-112	373.7	2.6	1.3e-111	373.1	2.6	1.2	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|227827608|ref|YP_002829388.1|	-	1.1e-84	284.0	0.0	1.8e-84	283.3	0.0	1.3	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|227827608|ref|YP_002829388.1|	-	3e-27	94.1	0.5	8e-27	92.8	0.5	1.8	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Apo-VLDL-II	PF05418.11	gi|227827608|ref|YP_002829388.1|	-	0.0011	19.4	0.9	0.0072	16.9	0.1	2.8	2	1	0	2	2	2	1	Apovitellenin	I	(Apo-VLDL-II)
cIII	PF08134.11	gi|227827608|ref|YP_002829388.1|	-	0.19	11.5	0.3	7.9	6.3	0.1	2.8	3	0	0	3	3	3	0	cIII	protein	family
Snf7	PF03357.21	gi|227827609|ref|YP_002829389.1|	-	7.8e-05	22.3	1.5	0.0001	22.0	1.5	1.3	1	1	0	1	1	1	1	Snf7
LOH1CR12	PF10158.9	gi|227827609|ref|YP_002829389.1|	-	0.001	19.1	0.2	0.0021	18.1	0.2	1.6	1	0	0	1	1	1	1	Tumour	suppressor	protein
ThrE	PF06738.12	gi|227827609|ref|YP_002829389.1|	-	0.036	13.4	0.1	0.054	12.8	0.1	1.2	1	0	0	1	1	1	0	Putative	threonine/serine	exporter
BLOC1S3	PF15753.5	gi|227827609|ref|YP_002829389.1|	-	0.084	13.0	1.2	0.44	10.7	0.9	2.1	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex	1	subunit	3
UbiD	PF01977.16	gi|227827611|ref|YP_002829391.1|	-	1.6e-130	435.7	0.0	1.8e-130	435.5	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
DUF3420	PF11900.8	gi|227827611|ref|YP_002829391.1|	-	0.039	14.1	0.1	0.33	11.1	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3420)
SUB1_ProdP9	PF18213.1	gi|227827611|ref|YP_002829391.1|	-	0.066	13.1	1.7	15	5.5	0.1	3.4	4	0	0	4	4	4	0	SUB1	protease	Prodomain	ProdP9
PALP	PF00291.25	gi|227827612|ref|YP_002829392.1|	-	3.8e-75	253.0	0.6	4.4e-75	252.8	0.6	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Zn-ribbon_8	PF09723.10	gi|227827612|ref|YP_002829392.1|	-	0.011	15.8	0.2	0.018	15.1	0.2	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|227827612|ref|YP_002829392.1|	-	0.019	15.0	0.1	0.033	14.2	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|227827612|ref|YP_002829392.1|	-	0.04	13.8	0.9	1.9	8.5	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Prok-RING_1	PF14446.6	gi|227827612|ref|YP_002829392.1|	-	0.086	12.8	1.0	0.14	12.1	1.0	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.6	gi|227827612|ref|YP_002829392.1|	-	0.13	12.1	1.0	0.32	10.8	1.0	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
Mu-like_Com	PF10122.9	gi|227827612|ref|YP_002829392.1|	-	0.24	10.9	0.4	0.49	9.9	0.4	1.5	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
TF_Zn_Ribbon	PF08271.12	gi|227827612|ref|YP_002829392.1|	-	0.33	10.5	1.0	0.73	9.4	1.0	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|227827612|ref|YP_002829392.1|	-	0.36	10.3	2.1	0.94	9.0	2.1	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF4774	PF15999.5	gi|227827612|ref|YP_002829392.1|	-	1.5	8.7	10.0	1.4	8.8	0.2	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4774)
AA_kinase	PF00696.28	gi|227827613|ref|YP_002829393.1|	-	6.6e-46	156.9	0.5	8.7e-46	156.5	0.1	1.4	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT	PF01842.25	gi|227827613|ref|YP_002829393.1|	-	0.00019	21.1	1.5	0.036	13.8	0.1	3.3	3	0	0	3	3	3	2	ACT	domain
MSP7_C	PF12948.7	gi|227827613|ref|YP_002829393.1|	-	0.072	13.7	1.7	0.2	12.3	1.7	1.7	1	0	0	1	1	1	0	MSP7-like	protein	C-terminal	domain
TBK1_CCD1	PF18394.1	gi|227827613|ref|YP_002829393.1|	-	0.086	12.4	0.8	0.14	11.7	0.2	1.6	2	0	0	2	2	2	0	TANK-binding	kinase	1	coiled-coil	domain	1
DUF1327	PF07041.11	gi|227827613|ref|YP_002829393.1|	-	0.1	12.7	0.5	0.27	11.2	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1327)
T2SSM	PF04612.12	gi|227827613|ref|YP_002829393.1|	-	0.11	12.6	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
Semialdhyde_dh	PF01118.24	gi|227827614|ref|YP_002829394.1|	-	1.8e-33	115.6	0.0	3.3e-33	114.7	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|227827614|ref|YP_002829394.1|	-	2.4e-26	93.0	0.0	3.5e-26	92.4	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.20	gi|227827614|ref|YP_002829394.1|	-	0.0067	16.5	0.0	0.013	15.6	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.16	gi|227827614|ref|YP_002829394.1|	-	0.035	14.8	0.0	1	10.1	0.0	2.6	3	0	0	3	3	3	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Ldh_1_N	PF00056.23	gi|227827614|ref|YP_002829394.1|	-	0.06	13.4	0.0	0.15	12.2	0.0	1.6	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|227827614|ref|YP_002829394.1|	-	0.15	12.8	0.0	0.29	11.8	0.0	1.4	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|227827614|ref|YP_002829394.1|	-	0.16	12.2	0.0	0.45	10.8	0.0	1.8	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
PHP_C	PF13263.6	gi|227827615|ref|YP_002829395.1|	-	5.6e-12	45.2	0.0	1.1e-11	44.2	0.0	1.6	1	0	0	1	1	1	1	PHP-associated
PHP	PF02811.19	gi|227827615|ref|YP_002829395.1|	-	0.0014	18.9	0.1	0.0021	18.4	0.1	1.6	1	1	0	1	1	1	1	PHP	domain
DUF3135	PF11333.8	gi|227827615|ref|YP_002829395.1|	-	0.0026	18.0	0.3	0.005	17.1	0.3	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3135)
Nre_N	PF04894.12	gi|227827616|ref|YP_002829396.1|	-	3.3e-95	319.0	0.0	4.2e-95	318.6	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|227827616|ref|YP_002829396.1|	-	3.1e-34	117.2	0.1	5.5e-34	116.4	0.1	1.4	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
OTCace	PF00185.24	gi|227827617|ref|YP_002829397.1|	-	7.2e-54	182.1	0.0	9.7e-54	181.7	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|227827617|ref|YP_002829397.1|	-	7.4e-40	136.4	0.0	1.2e-39	135.6	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
DUF4056	PF13265.6	gi|227827617|ref|YP_002829397.1|	-	0.026	13.8	0.0	0.047	13.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4056)
HTH_45	PF14947.6	gi|227827618|ref|YP_002829398.1|	-	0.0043	17.0	0.1	0.0087	16.0	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
Ribosomal_S19e	PF01090.19	gi|227827618|ref|YP_002829398.1|	-	0.021	14.5	0.1	0.037	13.7	0.1	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S19e
HTH_24	PF13412.6	gi|227827618|ref|YP_002829398.1|	-	0.099	12.2	1.1	0.22	11.1	0.3	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
SporV_AA	PF12164.8	gi|227827618|ref|YP_002829398.1|	-	0.13	12.6	0.5	2	8.8	0.1	2.6	3	0	0	3	3	3	0	Stage	V	sporulation	protein	AA
NAD_kinase	PF01513.21	gi|227827619|ref|YP_002829399.1|	-	3.6e-74	249.6	0.0	4e-74	249.4	0.0	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|227827619|ref|YP_002829399.1|	-	1.2e-07	31.4	0.1	3.3e-07	29.9	0.0	1.8	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
Rrf2	PF02082.20	gi|227827620|ref|YP_002829400.1|	-	0.0019	18.5	0.0	0.052	13.9	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_45	PF14947.6	gi|227827620|ref|YP_002829400.1|	-	0.0022	17.9	1.9	0.015	15.3	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|227827620|ref|YP_002829400.1|	-	0.018	14.9	0.0	0.053	13.4	0.0	1.7	2	0	0	2	2	2	0	MarR	family
TrmB	PF01978.19	gi|227827620|ref|YP_002829400.1|	-	0.021	14.7	0.4	0.17	11.8	0.0	2.5	2	2	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|227827620|ref|YP_002829400.1|	-	0.026	14.7	0.0	4	7.6	0.0	2.3	2	0	0	2	2	2	0	DprA	winged	helix	domain
MarR	PF01047.22	gi|227827620|ref|YP_002829400.1|	-	0.037	13.9	0.0	0.85	9.6	0.0	2.4	2	0	0	2	2	2	0	MarR	family
HTH_5	PF01022.20	gi|227827620|ref|YP_002829400.1|	-	0.087	12.7	0.1	0.29	11.0	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF4065	PF13274.6	gi|227827620|ref|YP_002829400.1|	-	1.7	9.5	8.6	0.46	11.4	5.0	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4065)
DUF5301	PF17225.3	gi|227827620|ref|YP_002829400.1|	-	5.6	7.5	10.5	15	6.1	0.3	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5300)
Cnd1_N	PF12922.7	gi|227827622|ref|YP_002829402.1|	-	0.38	10.6	2.2	0.42	10.4	1.2	1.5	2	0	0	2	2	2	0	non-SMC	mitotic	condensation	complex	subunit	1,	N-term
zinc_ribbon_15	PF17032.5	gi|227827623|ref|YP_002829403.1|	-	0.0042	17.8	3.6	0.038	14.7	0.2	2.4	2	0	0	2	2	2	1	zinc-ribbon	family
Zn_Tnp_IS91	PF14319.6	gi|227827623|ref|YP_002829403.1|	-	0.022	14.8	3.5	1.8	8.7	0.5	2.3	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
DZR	PF12773.7	gi|227827623|ref|YP_002829403.1|	-	0.63	10.1	4.7	1.1	9.3	0.3	2.2	2	0	0	2	2	2	0	Double	zinc	ribbon
Cpn60_TCP1	PF00118.24	gi|227827624|ref|YP_002829404.1|	-	3.1e-172	573.6	13.0	3.5e-172	573.4	13.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
SapB_1	PF05184.15	gi|227827625|ref|YP_002829405.1|	-	0.012	15.6	1.2	0.024	14.7	1.2	1.5	1	0	0	1	1	1	0	Saposin-like	type	B,	region	1
LPD38	PF18857.1	gi|227827625|ref|YP_002829405.1|	-	0.069	13.3	0.0	0.13	12.4	0.0	1.2	1	1	0	1	1	1	0	Large	polyvalent	protein	associated	domain	38
MIF4G_like_2	PF09090.11	gi|227827625|ref|YP_002829405.1|	-	0.074	12.5	0.4	0.12	11.9	0.4	1.2	1	0	0	1	1	1	0	MIF4G	like
ANAPC2	PF08672.11	gi|227827626|ref|YP_002829406.1|	-	0.0025	18.3	0.5	0.0078	16.7	0.2	1.9	1	1	1	2	2	2	1	Anaphase	promoting	complex	(APC)	subunit	2
DUF1500	PF07389.12	gi|227827626|ref|YP_002829406.1|	-	0.013	15.6	0.0	0.016	15.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1500)
DUF4423	PF14394.6	gi|227827626|ref|YP_002829406.1|	-	0.015	15.0	0.1	0.02	14.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|227827626|ref|YP_002829406.1|	-	0.021	14.7	0.1	0.032	14.1	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TBPIP	PF07106.13	gi|227827626|ref|YP_002829406.1|	-	0.026	14.5	0.1	0.046	13.7	0.1	1.4	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
Stork_head	PF10264.9	gi|227827626|ref|YP_002829406.1|	-	0.045	13.9	0.0	6.9	6.9	0.0	2.1	1	1	1	2	2	2	0	Winged	helix	Storkhead-box1	domain
RPA_C	PF08784.11	gi|227827626|ref|YP_002829406.1|	-	0.072	13.8	0.1	0.098	13.3	0.1	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
EF-hand_8	PF13833.6	gi|227827626|ref|YP_002829406.1|	-	0.1	12.4	0.5	2	8.3	0.1	2.2	1	1	0	2	2	2	0	EF-hand	domain	pair
MIase	PF02426.16	gi|227827626|ref|YP_002829406.1|	-	0.15	12.2	0.0	0.34	11.1	0.0	1.6	1	1	0	1	1	1	0	Muconolactone	delta-isomerase
zf-CCCH_4	PF18044.1	gi|227827627|ref|YP_002829407.1|	-	0.12	12.3	5.6	1.6	8.6	1.2	3.1	3	0	0	3	3	3	0	CCCH-type	zinc	finger
zf_CCCH_4	PF18345.1	gi|227827627|ref|YP_002829407.1|	-	6	7.1	12.1	2	8.6	2.2	3.5	4	0	0	4	4	4	0	Zinc	finger	domain
tRNA-synt_1d	PF00750.19	gi|227827629|ref|YP_002829409.1|	-	1.1e-33	116.6	1.7	1.7e-17	63.4	0.4	2.6	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|227827629|ref|YP_002829409.1|	-	5.5e-29	100.8	0.2	2.8e-28	98.5	0.1	2.3	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
tRNA-synt_1e	PF01406.19	gi|227827629|ref|YP_002829409.1|	-	0.00019	20.9	0.6	0.48	9.7	0.1	3.0	2	2	1	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|227827629|ref|YP_002829409.1|	-	0.00029	19.7	0.1	0.037	12.8	0.1	2.7	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.18	gi|227827629|ref|YP_002829409.1|	-	0.016	14.2	0.4	0.18	10.7	0.0	2.5	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(K)
Arg_tRNA_synt_N	PF03485.16	gi|227827629|ref|YP_002829409.1|	-	0.13	12.8	0.4	0.76	10.4	0.1	2.6	2	1	0	2	2	2	0	Arginyl	tRNA	synthetase	N	terminal	domain
APG6_N	PF17675.1	gi|227827629|ref|YP_002829409.1|	-	0.23	12.0	2.5	0.51	10.9	2.5	1.5	1	0	0	1	1	1	0	Apg6	coiled-coil	region
UPF0147	PF03685.13	gi|227827630|ref|YP_002829410.1|	-	2.6e-35	120.3	2.0	2.9e-35	120.2	2.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
UPF0253	PF06786.12	gi|227827630|ref|YP_002829410.1|	-	0.04	14.2	0.3	0.35	11.2	0.1	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0253)
Auto_anti-p27	PF06677.12	gi|227827631|ref|YP_002829411.1|	-	3.2e-14	52.8	0.3	4.5e-14	52.3	0.3	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Prok-RING_1	PF14446.6	gi|227827631|ref|YP_002829411.1|	-	0.12	12.3	0.2	0.18	11.7	0.2	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Thymidylate_kin	PF02223.17	gi|227827632|ref|YP_002829412.1|	-	5.1e-43	146.9	0.1	5.9e-43	146.7	0.1	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|227827632|ref|YP_002829412.1|	-	6.1e-10	39.3	1.9	0.00024	21.0	0.3	2.2	2	0	0	2	2	2	2	Deoxynucleoside	kinase
AAA_18	PF13238.6	gi|227827632|ref|YP_002829412.1|	-	1.1e-06	29.2	0.0	3.1e-06	27.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|227827632|ref|YP_002829412.1|	-	1.8e-06	28.3	0.0	2.3e-06	27.9	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
SKI	PF01202.22	gi|227827632|ref|YP_002829412.1|	-	6.6e-05	23.1	0.3	0.0042	17.2	0.1	2.1	2	0	0	2	2	2	1	Shikimate	kinase
AAA_17	PF13207.6	gi|227827632|ref|YP_002829412.1|	-	0.0015	19.0	0.2	0.084	13.3	0.0	2.8	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|227827632|ref|YP_002829412.1|	-	0.0096	16.2	0.0	0.017	15.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|227827632|ref|YP_002829412.1|	-	0.013	14.9	0.2	0.089	12.1	0.0	2.0	2	0	0	2	2	2	0	KaiC
AAA_16	PF13191.6	gi|227827632|ref|YP_002829412.1|	-	0.013	15.9	0.0	0.016	15.6	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|227827632|ref|YP_002829412.1|	-	0.017	15.2	0.1	0.047	13.8	0.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
KTI12	PF08433.10	gi|227827632|ref|YP_002829412.1|	-	0.017	14.6	0.1	0.071	12.6	0.0	1.9	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
AAA_14	PF13173.6	gi|227827632|ref|YP_002829412.1|	-	0.034	14.2	1.5	0.039	14.0	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|227827632|ref|YP_002829412.1|	-	0.04	13.5	0.2	0.18	11.4	0.0	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|227827632|ref|YP_002829412.1|	-	0.041	13.6	0.0	0.052	13.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|227827632|ref|YP_002829412.1|	-	0.046	13.6	0.0	0.078	12.9	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
PRK	PF00485.18	gi|227827632|ref|YP_002829412.1|	-	0.052	13.3	0.1	0.8	9.4	0.0	2.2	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
ATP_bind_1	PF03029.17	gi|227827632|ref|YP_002829412.1|	-	0.053	13.3	0.1	0.24	11.2	0.0	1.9	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
RNA_helicase	PF00910.22	gi|227827632|ref|YP_002829412.1|	-	0.058	13.8	0.1	0.22	11.9	0.0	2.0	2	1	0	3	3	2	0	RNA	helicase
cobW	PF02492.19	gi|227827632|ref|YP_002829412.1|	-	0.06	12.9	0.4	0.25	10.9	0.1	2.0	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.27	gi|227827632|ref|YP_002829412.1|	-	0.062	13.8	0.0	0.13	12.8	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_33	PF13671.6	gi|227827632|ref|YP_002829412.1|	-	0.08	13.1	0.0	0.39	10.9	0.0	2.0	2	1	1	3	3	3	0	AAA	domain
ADK	PF00406.22	gi|227827632|ref|YP_002829412.1|	-	0.11	12.6	0.1	1.6	8.8	0.1	2.2	2	0	0	2	2	2	0	Adenylate	kinase
NACHT	PF05729.12	gi|227827632|ref|YP_002829412.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Zeta_toxin	PF06414.12	gi|227827632|ref|YP_002829412.1|	-	0.12	11.6	0.0	0.21	10.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
RNA_pol_L	PF01193.24	gi|227827632|ref|YP_002829412.1|	-	0.13	11.7	0.0	0.35	10.3	0.0	1.7	1	1	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RuvB_N	PF05496.12	gi|227827632|ref|YP_002829412.1|	-	0.14	11.9	0.2	0.34	10.7	0.0	1.8	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NTPase_1	PF03266.15	gi|227827632|ref|YP_002829412.1|	-	0.15	11.9	0.6	0.54	10.1	0.0	2.2	3	0	0	3	3	3	0	NTPase
DUF87	PF01935.17	gi|227827632|ref|YP_002829412.1|	-	0.17	11.9	3.5	0.91	9.6	0.2	2.4	3	0	0	3	3	2	0	Helicase	HerA,	central	domain
CLP1_P	PF16575.5	gi|227827633|ref|YP_002829413.1|	-	3e-21	76.1	0.0	4.7e-21	75.4	0.0	1.3	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
CLP1_N	PF16573.5	gi|227827633|ref|YP_002829413.1|	-	0.0081	16.4	0.0	0.02	15.1	0.0	1.6	1	0	0	1	1	1	1	N-terminal	beta-sandwich	domain	of	polyadenylation	factor
PduV-EutP	PF10662.9	gi|227827633|ref|YP_002829413.1|	-	0.052	13.3	0.0	0.14	11.9	0.0	1.7	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
CoaE	PF01121.20	gi|227827633|ref|YP_002829413.1|	-	0.12	12.0	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Dephospho-CoA	kinase
AAA_24	PF13479.6	gi|227827635|ref|YP_002829415.1|	-	1.2e-06	28.4	0.0	1.7e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|227827635|ref|YP_002829415.1|	-	7.3e-06	25.7	0.0	3.7e-05	23.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|227827635|ref|YP_002829415.1|	-	8.3e-05	22.0	1.1	0.13	11.6	0.1	2.1	1	1	1	2	2	2	2	KaiC
AAA_16	PF13191.6	gi|227827635|ref|YP_002829415.1|	-	0.00018	22.0	0.1	0.00027	21.4	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad51	PF08423.11	gi|227827635|ref|YP_002829415.1|	-	0.00018	20.9	1.1	0.01	15.1	0.8	2.9	1	1	1	2	2	2	1	Rad51
AAA_22	PF13401.6	gi|227827635|ref|YP_002829415.1|	-	0.00038	20.8	0.3	0.002	18.4	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|227827635|ref|YP_002829415.1|	-	0.0017	18.8	0.0	0.0023	18.3	0.0	1.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|227827635|ref|YP_002829415.1|	-	0.0089	16.5	0.2	0.011	16.2	0.1	1.3	1	1	0	1	1	1	1	ABC	transporter
RNA_helicase	PF00910.22	gi|227827635|ref|YP_002829415.1|	-	0.011	16.1	0.1	0.09	13.2	0.1	2.1	1	1	1	2	2	2	0	RNA	helicase
ATPase_2	PF01637.18	gi|227827635|ref|YP_002829415.1|	-	0.044	13.7	0.8	0.057	13.3	0.7	1.3	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
RsgA_GTPase	PF03193.16	gi|227827635|ref|YP_002829415.1|	-	0.077	12.9	0.1	0.15	12.0	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_18	PF13238.6	gi|227827635|ref|YP_002829415.1|	-	0.08	13.5	0.0	0.14	12.7	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|227827635|ref|YP_002829415.1|	-	0.12	12.3	0.0	0.28	11.1	0.0	1.6	2	0	0	2	2	2	0	NACHT	domain
CarS-like	PF01864.17	gi|227827636|ref|YP_002829416.1|	-	5e-39	134.1	9.0	2.5e-38	131.8	9.0	1.8	1	1	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|227827636|ref|YP_002829416.1|	-	3.8e-05	23.6	3.5	3.8e-05	23.6	3.5	1.6	1	1	0	1	1	1	1	Cytidylyltransferase	family
E2	PF08199.11	gi|227827636|ref|YP_002829416.1|	-	0.12	12.4	0.6	6.7	6.7	0.1	2.7	2	0	0	2	2	2	0	Bacteriophage	E2-like	protein
TssN	PF17555.2	gi|227827637|ref|YP_002829417.1|	-	0.013	14.9	11.4	0.015	14.7	11.4	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
RhodobacterPufX	PF11511.8	gi|227827637|ref|YP_002829417.1|	-	0.14	11.8	0.3	0.14	11.8	0.3	2.3	3	0	0	3	3	3	0	Intrinsic	membrane	protein	PufX
TssO	PF17561.2	gi|227827637|ref|YP_002829417.1|	-	0.15	12.2	0.0	0.15	12.2	0.0	1.9	2	1	1	3	3	3	0	Type	VI	secretion	system,	TssO
FUSC	PF04632.12	gi|227827637|ref|YP_002829417.1|	-	0.23	10.0	1.0	0.29	9.6	1.0	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF2116	PF09889.9	gi|227827637|ref|YP_002829417.1|	-	0.41	10.7	0.1	0.41	10.7	0.1	3.0	2	1	1	3	3	3	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Fig1	PF12351.8	gi|227827637|ref|YP_002829417.1|	-	0.48	10.3	9.8	16	5.4	9.8	2.0	1	1	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
DUF2070	PF09843.9	gi|227827637|ref|YP_002829417.1|	-	1.4	7.2	9.4	1.4	7.1	9.4	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
LptF_LptG	PF03739.14	gi|227827637|ref|YP_002829417.1|	-	2.2	7.0	13.3	3.4	6.4	13.3	1.4	1	1	0	1	1	1	0	Lipopolysaccharide	export	system	permease	LptF/LptG
DUF4064	PF13273.6	gi|227827637|ref|YP_002829417.1|	-	8.6	6.7	20.4	0.78	10.1	1.3	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4064)
MCM	PF00493.23	gi|227827639|ref|YP_002829419.1|	-	2e-97	324.7	0.1	8.5e-97	322.6	0.0	2.0	2	0	0	2	2	2	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|227827639|ref|YP_002829419.1|	-	1.3e-35	121.9	0.1	2.6e-35	121.0	0.1	1.4	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|227827639|ref|YP_002829419.1|	-	4.3e-28	97.6	1.4	9.7e-28	96.4	1.4	1.6	1	0	0	1	1	1	1	MCM	AAA-lid	domain
MCM_N	PF14551.6	gi|227827639|ref|YP_002829419.1|	-	2.5e-18	66.6	0.5	6.6e-18	65.2	0.5	1.8	1	0	0	1	1	1	1	MCM	N-terminal	domain
AAA_5	PF07728.14	gi|227827639|ref|YP_002829419.1|	-	6.6e-08	32.6	0.0	1.7e-07	31.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|227827639|ref|YP_002829419.1|	-	3.3e-07	29.9	0.1	0.00012	21.6	0.0	2.5	1	1	1	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.11	gi|227827639|ref|YP_002829419.1|	-	1.5e-05	24.8	0.0	3.3e-05	23.8	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|227827639|ref|YP_002829419.1|	-	6.4e-05	22.7	0.1	0.00033	20.4	0.1	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
DUF3987	PF13148.6	gi|227827639|ref|YP_002829419.1|	-	0.017	14.2	0.0	0.64	9.0	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
FAM167	PF11652.8	gi|227827639|ref|YP_002829419.1|	-	0.061	13.8	6.4	5.2	7.6	0.5	4.2	5	1	1	6	6	6	0	FAM167
AAA_30	PF13604.6	gi|227827639|ref|YP_002829419.1|	-	0.71	9.6	3.0	2	8.1	2.3	2.0	2	0	0	2	2	2	0	AAA	domain
Sld5	PF05916.11	gi|227827640|ref|YP_002829420.1|	-	8.9e-12	45.4	2.4	1.4e-11	44.8	2.4	1.3	1	0	0	1	1	1	1	GINS	complex	protein
THUMP	PF02926.17	gi|227827641|ref|YP_002829421.1|	-	4.5e-16	59.2	1.1	5.3e-16	59.0	1.1	1.1	1	0	0	1	1	1	1	THUMP	domain
Cdc6_C	PF09079.11	gi|227827642|ref|YP_002829422.1|	-	5e-19	68.1	0.3	1.2e-18	66.9	0.3	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|227827642|ref|YP_002829422.1|	-	4.7e-13	49.6	0.0	1.4e-12	48.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|227827642|ref|YP_002829422.1|	-	2.5e-06	28.0	0.1	1.8e-05	25.2	0.1	2.4	1	1	0	1	1	1	1	AAA	ATPase	domain
TniB	PF05621.11	gi|227827642|ref|YP_002829422.1|	-	3.8e-06	26.4	0.0	7.8e-06	25.4	0.0	1.5	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA	PF00004.29	gi|227827642|ref|YP_002829422.1|	-	0.0002	21.8	0.0	0.0006	20.2	0.0	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|227827642|ref|YP_002829422.1|	-	0.0046	17.5	0.0	0.041	14.4	0.0	2.4	3	0	0	3	3	2	1	ABC	transporter
ORC4_C	PF14629.6	gi|227827642|ref|YP_002829422.1|	-	0.02	14.2	0.0	0.031	13.7	0.0	1.3	1	0	0	1	1	1	0	Origin	recognition	complex	(ORC)	subunit	4	C-terminus
AAA_19	PF13245.6	gi|227827642|ref|YP_002829422.1|	-	0.031	14.6	0.1	0.25	11.7	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|227827642|ref|YP_002829422.1|	-	0.034	13.7	0.0	0.1	12.1	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
ATPase_2	PF01637.18	gi|227827642|ref|YP_002829422.1|	-	0.041	13.8	6.3	0.13	12.1	0.6	2.8	1	1	1	3	3	3	0	ATPase	domain	predominantly	from	Archaea
Roc	PF08477.13	gi|227827642|ref|YP_002829422.1|	-	0.071	13.3	0.1	0.21	11.8	0.1	1.9	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ResIII	PF04851.15	gi|227827642|ref|YP_002829422.1|	-	0.074	13.1	0.0	0.23	11.5	0.0	1.8	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
ThiP_synth	PF10120.9	gi|227827642|ref|YP_002829422.1|	-	0.076	12.6	0.0	0.19	11.3	0.0	1.7	1	0	0	1	1	1	0	Thiamine-phosphate	synthase
AIG1	PF04548.16	gi|227827642|ref|YP_002829422.1|	-	0.077	12.3	0.0	0.2	10.9	0.0	1.7	1	0	0	1	1	1	0	AIG1	family
NB-ARC	PF00931.22	gi|227827642|ref|YP_002829422.1|	-	0.1	11.8	0.0	0.21	10.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
DUF87	PF01935.17	gi|227827642|ref|YP_002829422.1|	-	0.11	12.5	2.3	1.1	9.4	2.1	2.7	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_5	PF07728.14	gi|227827642|ref|YP_002829422.1|	-	0.14	12.2	0.3	4.8	7.2	0.0	3.1	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|227827642|ref|YP_002829422.1|	-	0.2	11.4	0.0	0.53	10.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
TrmB	PF01978.19	gi|227827643|ref|YP_002829423.1|	-	0.00082	19.2	0.2	0.001	18.9	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MoaC	PF01967.21	gi|227827644|ref|YP_002829424.1|	-	1.2e-47	161.4	3.0	1.3e-47	161.3	3.0	1.0	1	0	0	1	1	1	1	MoaC	family
AAA	PF00004.29	gi|227827645|ref|YP_002829425.1|	-	1.7e-14	54.3	0.0	3e-14	53.6	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|227827645|ref|YP_002829425.1|	-	5.2e-09	36.0	0.0	9.2e-09	35.2	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|227827645|ref|YP_002829425.1|	-	1.1e-07	31.9	0.0	2.3e-07	30.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Rad17	PF03215.15	gi|227827645|ref|YP_002829425.1|	-	1.5e-07	31.5	0.0	4.8e-07	29.9	0.0	1.9	1	1	1	2	2	2	1	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|227827645|ref|YP_002829425.1|	-	1.7e-06	28.5	0.0	3.4e-06	27.5	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|227827645|ref|YP_002829425.1|	-	2.2e-06	27.7	0.0	4.6e-06	26.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|227827645|ref|YP_002829425.1|	-	3.7e-06	26.3	0.0	7.8e-06	25.2	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_22	PF13401.6	gi|227827645|ref|YP_002829425.1|	-	1e-05	25.8	0.0	9.2e-05	22.7	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
AAA_assoc_2	PF16193.5	gi|227827645|ref|YP_002829425.1|	-	2.1e-05	24.7	0.4	8.7e-05	22.8	0.1	2.3	2	1	0	2	2	1	1	AAA	C-terminal	domain
IstB_IS21	PF01695.17	gi|227827645|ref|YP_002829425.1|	-	5e-05	23.1	0.1	0.00018	21.3	0.0	1.9	2	1	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|227827645|ref|YP_002829425.1|	-	8.3e-05	23.1	0.1	0.00037	21.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|227827645|ref|YP_002829425.1|	-	0.00013	21.9	0.0	0.018	14.9	0.0	3.0	1	1	2	3	3	3	1	NACHT	domain
RNA_helicase	PF00910.22	gi|227827645|ref|YP_002829425.1|	-	0.00014	22.2	0.0	0.0004	20.7	0.0	1.8	1	0	0	1	1	1	1	RNA	helicase
AAA_33	PF13671.6	gi|227827645|ref|YP_002829425.1|	-	0.00037	20.7	0.0	0.00065	19.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|227827645|ref|YP_002829425.1|	-	0.00051	20.5	0.0	0.0021	18.5	0.0	2.1	2	0	0	2	2	1	1	AAA	domain
NB-ARC	PF00931.22	gi|227827645|ref|YP_002829425.1|	-	0.00053	19.3	0.0	0.0022	17.3	0.0	1.9	2	0	0	2	2	2	1	NB-ARC	domain
AAA_2	PF07724.14	gi|227827645|ref|YP_002829425.1|	-	0.00069	19.8	0.0	0.0018	18.4	0.0	1.6	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
AAA_25	PF13481.6	gi|227827645|ref|YP_002829425.1|	-	0.0016	18.1	0.0	0.0033	17.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DNA_pol3_delta	PF06144.13	gi|227827645|ref|YP_002829425.1|	-	0.002	17.9	1.0	0.0059	16.4	0.0	2.3	3	0	0	3	3	2	1	DNA	polymerase	III,	delta	subunit
Mg_chelatase	PF01078.21	gi|227827645|ref|YP_002829425.1|	-	0.0049	16.3	0.0	0.0073	15.7	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.6	gi|227827645|ref|YP_002829425.1|	-	0.0055	17.0	0.0	0.012	15.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|227827645|ref|YP_002829425.1|	-	0.0091	16.5	0.0	0.044	14.3	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
RsgA_GTPase	PF03193.16	gi|227827645|ref|YP_002829425.1|	-	0.01	15.7	0.0	0.026	14.4	0.0	1.6	2	0	0	2	2	1	0	RsgA	GTPase
AAA_24	PF13479.6	gi|227827645|ref|YP_002829425.1|	-	0.015	15.0	0.0	0.032	14.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|227827645|ref|YP_002829425.1|	-	0.017	15.1	0.0	0.032	14.2	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_23	PF13476.6	gi|227827645|ref|YP_002829425.1|	-	0.02	15.4	0.1	0.34	11.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Hydin_ADK	PF17213.3	gi|227827645|ref|YP_002829425.1|	-	0.023	15.0	0.0	0.039	14.2	0.0	1.3	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
TIP49	PF06068.13	gi|227827645|ref|YP_002829425.1|	-	0.027	13.7	0.0	0.045	13.0	0.0	1.3	1	0	0	1	1	1	0	TIP49	P-loop	domain
Sigma54_activat	PF00158.26	gi|227827645|ref|YP_002829425.1|	-	0.028	14.1	0.0	0.073	12.8	0.0	1.7	1	1	0	1	1	1	0	Sigma-54	interaction	domain
NTPase_1	PF03266.15	gi|227827645|ref|YP_002829425.1|	-	0.029	14.3	0.0	0.3	11.0	0.0	2.1	2	0	0	2	2	2	0	NTPase
AAA_7	PF12775.7	gi|227827645|ref|YP_002829425.1|	-	0.034	13.7	0.0	0.056	12.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_11	PF13086.6	gi|227827645|ref|YP_002829425.1|	-	0.048	13.4	0.1	0.1	12.3	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
Parvo_NS1	PF01057.17	gi|227827645|ref|YP_002829425.1|	-	0.05	12.7	0.1	0.22	10.6	0.0	1.9	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
TIP49_C	PF17856.1	gi|227827645|ref|YP_002829425.1|	-	0.053	13.7	0.0	0.2	11.8	0.0	2.0	1	0	0	1	1	1	0	TIP49	AAA-lid	domain
MeaB	PF03308.16	gi|227827645|ref|YP_002829425.1|	-	0.069	12.1	0.0	0.13	11.2	0.0	1.5	1	1	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_3	PF07726.11	gi|227827645|ref|YP_002829425.1|	-	0.097	12.5	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|227827645|ref|YP_002829425.1|	-	0.099	11.9	0.0	0.16	11.2	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_30	PF13604.6	gi|227827645|ref|YP_002829425.1|	-	0.11	12.2	0.1	0.24	11.1	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|227827645|ref|YP_002829425.1|	-	0.13	11.6	0.0	0.22	10.8	0.0	1.5	1	0	0	1	1	1	0	KaiC
Sigma54_activ_2	PF14532.6	gi|227827645|ref|YP_002829425.1|	-	0.14	12.3	0.0	0.28	11.3	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Rep_fac_C	PF08542.11	gi|227827646|ref|YP_002829426.1|	-	4.8e-25	87.8	2.1	6.5e-25	87.4	0.5	2.1	2	0	0	2	2	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|227827646|ref|YP_002829426.1|	-	3.1e-15	56.8	0.0	1e-14	55.1	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|227827646|ref|YP_002829426.1|	-	4.5e-14	52.6	0.0	6.3e-10	39.1	0.0	2.4	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
RuvB_N	PF05496.12	gi|227827646|ref|YP_002829426.1|	-	9.3e-07	28.7	0.0	3.6e-06	26.8	0.0	2.0	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|227827646|ref|YP_002829426.1|	-	1.3e-05	25.7	0.1	0.015	15.7	0.0	3.2	2	1	1	3	3	3	1	AAA	ATPase	domain
Rad17	PF03215.15	gi|227827646|ref|YP_002829426.1|	-	1.4e-05	25.1	0.0	2.9e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_3	PF07726.11	gi|227827646|ref|YP_002829426.1|	-	1.5e-05	24.9	0.0	3.1e-05	23.8	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|227827646|ref|YP_002829426.1|	-	1.5e-05	25.3	0.2	0.11	12.7	0.0	3.0	2	1	1	3	3	3	2	AAA	domain
AAA_14	PF13173.6	gi|227827646|ref|YP_002829426.1|	-	1.9e-05	24.7	0.1	0.00014	21.9	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
DNA_pol3_delta	PF06144.13	gi|227827646|ref|YP_002829426.1|	-	3.2e-05	23.8	1.4	0.0052	16.6	0.2	2.5	2	1	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
TIP49	PF06068.13	gi|227827646|ref|YP_002829426.1|	-	5.9e-05	22.4	0.0	0.00048	19.4	0.0	2.1	1	1	0	1	1	1	1	TIP49	P-loop	domain
ResIII	PF04851.15	gi|227827646|ref|YP_002829426.1|	-	0.0001	22.4	0.0	0.00082	19.4	0.0	2.1	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_assoc_2	PF16193.5	gi|227827646|ref|YP_002829426.1|	-	0.00027	21.2	0.1	0.00074	19.8	0.1	2.0	1	1	0	1	1	1	1	AAA	C-terminal	domain
ATPase_2	PF01637.18	gi|227827646|ref|YP_002829426.1|	-	0.00033	20.7	0.1	0.00059	19.8	0.1	1.5	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|227827646|ref|YP_002829426.1|	-	0.00044	20.8	0.0	0.0016	19.0	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|227827646|ref|YP_002829426.1|	-	0.00059	19.9	0.1	0.0065	16.5	0.0	2.7	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_11	PF13086.6	gi|227827646|ref|YP_002829426.1|	-	0.0006	19.7	0.0	0.0008	19.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_7	PF12775.7	gi|227827646|ref|YP_002829426.1|	-	0.0015	18.1	0.0	0.0027	17.2	0.0	1.5	1	1	0	1	1	1	1	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|227827646|ref|YP_002829426.1|	-	0.0023	17.3	0.0	0.13	11.6	0.0	2.5	3	0	0	3	3	2	1	Magnesium	chelatase,	subunit	ChlI
PhoH	PF02562.16	gi|227827646|ref|YP_002829426.1|	-	0.0025	17.3	0.0	0.24	10.8	0.0	2.5	2	0	0	2	2	2	1	PhoH-like	protein
IstB_IS21	PF01695.17	gi|227827646|ref|YP_002829426.1|	-	0.0027	17.5	0.0	0.0071	16.1	0.0	1.7	2	0	0	2	2	1	1	IstB-like	ATP	binding	protein
TniB	PF05621.11	gi|227827646|ref|YP_002829426.1|	-	0.0036	16.7	0.0	0.12	11.8	0.0	2.4	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_24	PF13479.6	gi|227827646|ref|YP_002829426.1|	-	0.0054	16.5	0.0	0.019	14.7	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
T2SSE	PF00437.20	gi|227827646|ref|YP_002829426.1|	-	0.0058	15.7	0.0	0.012	14.7	0.0	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_25	PF13481.6	gi|227827646|ref|YP_002829426.1|	-	0.0097	15.5	0.1	0.025	14.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|227827646|ref|YP_002829426.1|	-	0.0097	15.1	0.0	0.02	14.1	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
FtsK_SpoIIIE	PF01580.18	gi|227827646|ref|YP_002829426.1|	-	0.011	15.0	0.0	0.041	13.2	0.0	1.9	2	1	1	3	3	3	0	FtsK/SpoIIIE	family
DUF2075	PF09848.9	gi|227827646|ref|YP_002829426.1|	-	0.019	14.2	0.1	0.19	11.0	0.1	2.1	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_33	PF13671.6	gi|227827646|ref|YP_002829426.1|	-	0.031	14.4	0.2	0.099	12.8	0.2	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|227827646|ref|YP_002829426.1|	-	0.053	13.8	0.0	0.14	12.4	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|227827646|ref|YP_002829426.1|	-	0.057	13.1	0.0	1.3	8.7	0.0	2.4	2	0	0	2	2	2	0	Sigma-54	interaction	domain
DEAD	PF00270.29	gi|227827646|ref|YP_002829426.1|	-	0.058	13.2	0.7	8.1	6.2	0.0	3.1	3	1	1	4	4	4	0	DEAD/DEAH	box	helicase
Sigma54_activ_2	PF14532.6	gi|227827646|ref|YP_002829426.1|	-	0.076	13.1	0.0	0.39	10.8	0.0	2.0	1	1	0	1	1	1	0	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|227827646|ref|YP_002829426.1|	-	0.08	13.3	0.4	0.63	10.4	0.0	2.3	2	1	1	3	3	3	0	AAA	domain
Viral_helicase1	PF01443.18	gi|227827646|ref|YP_002829426.1|	-	0.1	12.3	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|227827646|ref|YP_002829426.1|	-	0.14	11.9	0.9	0.34	10.6	0.1	2.2	2	2	1	3	3	2	0	AAA	domain
PBP	PF01161.20	gi|227827647|ref|YP_002829427.1|	-	1.6e-32	112.6	0.1	2e-32	112.3	0.1	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Proteasome	PF00227.26	gi|227827648|ref|YP_002829428.1|	-	2.7e-50	170.5	0.5	3.1e-50	170.3	0.5	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Amidase	PF01425.21	gi|227827649|ref|YP_002829429.1|	-	1.7e-78	264.6	0.4	6.9e-78	262.6	0.4	1.7	1	1	0	1	1	1	1	Amidase
ADH_N	PF08240.12	gi|227827650|ref|YP_002829430.1|	-	3.2e-26	91.4	0.1	6.4e-26	90.4	0.1	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227827650|ref|YP_002829430.1|	-	7.4e-24	84.2	0.2	1.4e-23	83.3	0.2	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227827650|ref|YP_002829430.1|	-	1.8e-13	51.7	0.1	4.1e-13	50.5	0.1	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|227827650|ref|YP_002829430.1|	-	0.00013	21.3	2.0	0.00025	20.4	2.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
CMAS	PF02353.20	gi|227827650|ref|YP_002829430.1|	-	0.00031	20.1	0.0	0.00046	19.6	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
ELFV_dehydrog	PF00208.21	gi|227827650|ref|YP_002829430.1|	-	0.0026	17.5	0.4	0.0042	16.8	0.4	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
SIS_2	PF13580.6	gi|227827650|ref|YP_002829430.1|	-	0.0064	16.5	0.2	0.013	15.6	0.2	1.4	1	0	0	1	1	1	1	SIS	domain
adh_short	PF00106.25	gi|227827650|ref|YP_002829430.1|	-	0.0086	15.5	0.6	0.014	14.9	0.6	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
LDcluster4	PF18306.1	gi|227827650|ref|YP_002829430.1|	-	0.018	14.6	0.6	0.042	13.4	0.6	1.6	1	0	0	1	1	1	0	SLOG	cluster4	family
Eno-Rase_NADH_b	PF12242.8	gi|227827650|ref|YP_002829430.1|	-	0.018	14.8	0.8	0.04	13.7	0.8	1.5	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
NAD_binding_10	PF13460.6	gi|227827650|ref|YP_002829430.1|	-	0.02	14.8	0.2	0.039	13.9	0.2	1.5	1	0	0	1	1	1	0	NAD(P)H-binding
2-Hacid_dh_C	PF02826.19	gi|227827650|ref|YP_002829430.1|	-	0.034	13.5	0.3	0.058	12.8	0.3	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|227827650|ref|YP_002829430.1|	-	0.037	13.5	0.1	0.055	12.9	0.1	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|227827650|ref|YP_002829430.1|	-	0.058	12.7	0.8	0.1	11.9	0.8	1.3	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
E1-N	PF14463.6	gi|227827650|ref|YP_002829430.1|	-	0.072	12.9	0.1	0.17	11.7	0.1	1.6	1	0	0	1	1	1	0	E1	N-terminal	domain
ADH_N_assoc	PF13823.6	gi|227827650|ref|YP_002829430.1|	-	0.18	11.8	4.1	3.3	7.7	4.1	2.8	1	1	0	1	1	1	0	Alcohol	dehydrogenase	GroES-associated
RmlD_sub_bind	PF04321.17	gi|227827650|ref|YP_002829430.1|	-	0.21	10.7	0.5	3.8	6.5	0.2	2.2	1	1	1	2	2	2	0	RmlD	substrate	binding	domain
Beta-Casp	PF10996.8	gi|227827653|ref|YP_002829433.1|	-	6.3e-24	84.4	0.0	1.5e-23	83.2	0.0	1.7	1	0	0	1	1	1	1	Beta-Casp	domain
KH_7	PF17214.3	gi|227827653|ref|YP_002829433.1|	-	2.2e-18	66.0	9.3	1.7e-17	63.1	1.2	3.1	3	0	0	3	3	3	2	KH	domain
RMMBL	PF07521.12	gi|227827653|ref|YP_002829433.1|	-	1.2e-17	63.6	0.2	8.8e-17	60.8	0.0	2.6	3	0	0	3	3	3	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_6	PF16661.5	gi|227827653|ref|YP_002829433.1|	-	2.8e-14	53.0	0.0	1.9e-13	50.3	0.0	2.3	3	0	0	3	3	3	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|227827653|ref|YP_002829433.1|	-	2.5e-13	50.5	0.2	5.1e-12	46.2	0.2	2.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227827653|ref|YP_002829433.1|	-	1.9e-12	47.1	0.0	3.3e-12	46.3	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|227827653|ref|YP_002829433.1|	-	0.00043	20.1	10.3	0.0034	17.2	0.6	3.0	1	1	1	2	2	2	2	KH	domain
Lactamase_B_3	PF13483.6	gi|227827653|ref|YP_002829433.1|	-	0.00054	19.9	0.0	0.0039	17.1	0.0	2.3	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
PG_binding_4	PF12229.8	gi|227827653|ref|YP_002829433.1|	-	0.02	15.2	0.3	0.047	14.0	0.3	1.6	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
KH_1	PF00013.29	gi|227827653|ref|YP_002829433.1|	-	0.39	10.6	3.5	0.77	9.6	0.0	2.6	2	0	0	2	2	2	0	KH	domain
Fe-ADH_2	PF13685.6	gi|227827654|ref|YP_002829434.1|	-	1.3e-62	211.7	0.0	1.6e-62	211.4	0.0	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|227827654|ref|YP_002829434.1|	-	3.1e-22	78.9	0.2	1.6e-21	76.6	0.2	1.8	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|227827654|ref|YP_002829434.1|	-	5.8e-08	32.2	0.1	1.5e-06	27.6	0.1	2.5	1	1	0	1	1	1	1	3-dehydroquinate	synthase
Malic_M	PF03949.15	gi|227827654|ref|YP_002829434.1|	-	0.089	12.1	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Malic	enzyme,	NAD	binding	domain
FKBP_C	PF00254.28	gi|227827655|ref|YP_002829435.1|	-	1.7e-12	47.5	0.0	3.5e-12	46.5	0.0	1.6	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
FKBP26_C	PF18046.1	gi|227827655|ref|YP_002829435.1|	-	3.8e-06	26.9	0.1	8e-06	25.9	0.1	1.6	1	0	0	1	1	1	1	FKBP26_C-terminal
LSM	PF01423.22	gi|227827656|ref|YP_002829436.1|	-	7.9e-25	86.3	0.6	8.8e-25	86.2	0.6	1.0	1	0	0	1	1	1	1	LSM	domain
DUF150_C	PF17384.2	gi|227827656|ref|YP_002829436.1|	-	0.043	13.9	0.0	0.054	13.6	0.0	1.3	1	1	0	1	1	1	0	RimP	C-terminal	SH3	domain
HydF_dimer	PF18128.1	gi|227827656|ref|YP_002829436.1|	-	0.044	13.9	0.1	0.39	10.8	0.0	1.9	2	0	0	2	2	2	0	Hydrogen	maturase	F	dimerization	domain
Pirin_C	PF05726.13	gi|227827656|ref|YP_002829436.1|	-	0.17	12.3	0.1	0.18	12.1	0.1	1.0	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
Ribosomal_L37e	PF01907.19	gi|227827657|ref|YP_002829437.1|	-	9.2e-25	86.6	11.6	1e-24	86.4	11.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
NOB1_Zn_bind	PF08772.11	gi|227827657|ref|YP_002829437.1|	-	0.0032	17.6	2.1	0.0038	17.3	2.1	1.2	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
Stc1	PF12898.7	gi|227827657|ref|YP_002829437.1|	-	0.0034	17.9	0.7	0.0036	17.8	0.7	1.1	1	0	0	1	1	1	1	Stc1	domain
Ephrin_rec_like	PF07699.13	gi|227827657|ref|YP_002829437.1|	-	0.01	15.6	1.0	0.013	15.2	1.0	1.3	1	0	0	1	1	1	0	Putative	ephrin-receptor	like
Cript	PF10235.9	gi|227827657|ref|YP_002829437.1|	-	0.018	15.6	1.7	0.022	15.3	1.7	1.2	1	0	0	1	1	1	0	Microtubule-associated	protein	CRIPT
HypA	PF01155.19	gi|227827657|ref|YP_002829437.1|	-	0.023	14.7	0.4	0.026	14.6	0.4	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|227827657|ref|YP_002829437.1|	-	0.024	14.7	1.6	0.031	14.3	1.6	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L32p	PF01783.23	gi|227827657|ref|YP_002829437.1|	-	0.23	11.7	8.3	0.24	11.7	7.0	1.7	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
Spermine_synth	PF01564.17	gi|227827658|ref|YP_002829438.1|	-	2.2e-48	164.2	0.0	3.3e-48	163.6	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Spermine_synt_N	PF17284.2	gi|227827658|ref|YP_002829438.1|	-	1.3e-08	34.6	0.1	3.5e-08	33.2	0.1	1.7	1	0	0	1	1	1	1	Spermidine	synthase	tetramerisation	domain
Methyltransf_12	PF08242.12	gi|227827658|ref|YP_002829438.1|	-	7.1e-05	23.5	0.0	0.00012	22.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827658|ref|YP_002829438.1|	-	0.00042	21.0	0.0	0.00074	20.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_30	PF05430.11	gi|227827658|ref|YP_002829438.1|	-	0.00059	19.7	0.0	0.0013	18.6	0.0	1.6	1	1	0	1	1	1	1	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.14	gi|227827658|ref|YP_002829438.1|	-	0.0016	18.1	0.0	0.0023	17.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|227827658|ref|YP_002829438.1|	-	0.0018	18.1	0.0	0.0027	17.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227827658|ref|YP_002829438.1|	-	0.0028	17.5	0.0	0.0048	16.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_5	PF01795.19	gi|227827658|ref|YP_002829438.1|	-	0.012	15.1	0.0	0.019	14.5	0.0	1.2	1	0	0	1	1	1	0	MraW	methylase	family
Methyltransf_18	PF12847.7	gi|227827658|ref|YP_002829438.1|	-	0.034	14.1	0.0	0.064	13.2	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF43	PF01861.16	gi|227827658|ref|YP_002829438.1|	-	0.037	13.2	0.0	0.074	12.3	0.0	1.5	1	0	0	1	1	1	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
Methyltransf_2	PF00891.18	gi|227827658|ref|YP_002829438.1|	-	0.061	12.6	0.0	0.13	11.5	0.0	1.6	1	1	0	1	1	1	0	O-methyltransferase	domain
AdoHcyase	PF05221.17	gi|227827659|ref|YP_002829439.1|	-	5.1e-74	249.1	0.0	1.3e-42	146.0	0.1	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|227827659|ref|YP_002829439.1|	-	2.4e-61	206.5	1.0	4.1e-61	205.8	1.0	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
IlvN	PF07991.12	gi|227827659|ref|YP_002829439.1|	-	1.2e-07	31.4	0.2	2.3e-07	30.5	0.2	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|227827659|ref|YP_002829439.1|	-	2.6e-07	30.2	0.3	5.4e-07	29.1	0.3	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|227827659|ref|YP_002829439.1|	-	0.012	15.9	0.1	0.027	14.7	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
THF_DHG_CYH_C	PF02882.19	gi|227827659|ref|YP_002829439.1|	-	0.035	13.4	1.4	0.3	10.4	1.4	2.1	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DUF2120	PF09893.9	gi|227827659|ref|YP_002829439.1|	-	0.069	13.3	0.2	0.42	10.7	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
DUF4013	PF13197.6	gi|227827660|ref|YP_002829440.1|	-	0.0096	15.8	0.2	0.29	10.9	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF4013)
Ribosomal_L21e	PF01157.18	gi|227827661|ref|YP_002829441.1|	-	2.9e-36	123.4	1.4	3.2e-36	123.2	1.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
CSD2	PF17876.1	gi|227827661|ref|YP_002829441.1|	-	0.0024	18.0	0.0	0.0039	17.3	0.0	1.3	1	0	0	1	1	1	1	Cold	shock	domain
Cobl	PF09469.10	gi|227827661|ref|YP_002829441.1|	-	0.098	12.9	0.0	0.16	12.3	0.0	1.4	1	0	0	1	1	1	0	Cordon-bleu	ubiquitin-like	domain
RNA_pol_Rpb4	PF03874.16	gi|227827662|ref|YP_002829442.1|	-	8.2e-08	32.6	0.7	9.6e-08	32.4	0.7	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
UTRA	PF07702.13	gi|227827662|ref|YP_002829442.1|	-	0.014	15.2	0.1	0.02	14.7	0.1	1.4	1	1	0	1	1	1	0	UTRA	domain
DDE_3	PF13358.6	gi|227827662|ref|YP_002829442.1|	-	0.015	15.1	0.0	0.02	14.6	0.0	1.2	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
SPO22	PF08631.10	gi|227827662|ref|YP_002829442.1|	-	0.03	13.8	0.1	0.035	13.6	0.1	1.1	1	0	0	1	1	1	0	Meiosis	protein	SPO22/ZIP4	like
DUF655	PF04919.12	gi|227827663|ref|YP_002829443.1|	-	1.3e-69	233.8	4.0	1.5e-69	233.6	4.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|227827663|ref|YP_002829443.1|	-	0.0013	18.9	0.1	0.0032	17.7	0.1	1.6	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
RrnaAD	PF00398.20	gi|227827664|ref|YP_002829444.1|	-	1.6e-13	50.3	0.2	4.1e-12	45.7	0.2	2.0	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|227827664|ref|YP_002829444.1|	-	0.052	14.3	0.0	0.1	13.3	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227827664|ref|YP_002829444.1|	-	0.15	12.8	0.0	0.52	11.1	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	domain
MTS	PF05175.14	gi|227827665|ref|YP_002829445.1|	-	4.5e-11	42.6	0.0	1.4e-10	41.0	0.0	1.7	1	1	1	2	2	2	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|227827665|ref|YP_002829445.1|	-	3.3e-07	30.0	0.0	4.6e-07	29.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Cons_hypoth95	PF03602.15	gi|227827665|ref|YP_002829445.1|	-	0.0021	17.7	0.0	0.003	17.2	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
PCMT	PF01135.19	gi|227827665|ref|YP_002829445.1|	-	0.0041	16.9	0.0	0.0059	16.4	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RepA_N	PF06970.11	gi|227827665|ref|YP_002829445.1|	-	0.016	15.2	0.1	0.031	14.2	0.1	1.4	1	0	0	1	1	1	0	Replication	initiator	protein	A	(RepA)	N-terminus
Methyltransf_16	PF10294.9	gi|227827665|ref|YP_002829445.1|	-	0.044	13.5	0.1	0.071	12.8	0.1	1.3	1	0	0	1	1	1	0	Lysine	methyltransferase
Methyltransf_23	PF13489.6	gi|227827665|ref|YP_002829445.1|	-	0.1	12.4	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827665|ref|YP_002829445.1|	-	0.13	12.9	0.0	0.21	12.3	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
SpoU_methylase	PF00588.19	gi|227827666|ref|YP_002829446.1|	-	6.1e-34	117.2	0.0	9.4e-34	116.6	0.0	1.3	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|227827666|ref|YP_002829446.1|	-	3.3e-05	23.8	0.0	0.0015	18.4	0.0	2.2	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
DUF5071	PF16804.5	gi|227827666|ref|YP_002829446.1|	-	0.05	13.9	0.1	0.079	13.2	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5071)
Ribosomal_S3Ae	PF01015.18	gi|227827667|ref|YP_002829447.1|	-	2e-66	223.4	2.7	2.3e-66	223.2	2.7	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
NTP_transferase	PF00483.23	gi|227827668|ref|YP_002829448.1|	-	1.9e-36	125.9	0.0	2.6e-36	125.5	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|227827668|ref|YP_002829448.1|	-	1.8e-18	65.4	22.4	1.1e-07	31.3	0.8	5.1	3	1	2	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|227827668|ref|YP_002829448.1|	-	7.5e-14	52.4	0.0	1e-13	51.9	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|227827668|ref|YP_002829448.1|	-	2.3e-07	30.5	11.7	3.9e-05	23.3	0.1	4.1	4	0	0	4	4	4	3	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|227827668|ref|YP_002829448.1|	-	6.3e-06	26.1	0.1	0.00038	20.3	0.0	2.1	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
NTP_transf_4	PF13562.6	gi|227827668|ref|YP_002829448.1|	-	0.0039	17.4	0.2	1.3	9.2	0.0	3.1	2	1	0	2	2	2	1	Sugar	nucleotidyl	transferase
MMR_HSR1_C	PF08438.10	gi|227827669|ref|YP_002829449.1|	-	1.8e-37	128.3	0.1	3.1e-37	127.6	0.1	1.4	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|227827669|ref|YP_002829449.1|	-	5.8e-23	81.1	0.1	1.4e-20	73.5	0.0	3.1	2	1	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|227827669|ref|YP_002829449.1|	-	2.7e-16	59.3	0.0	5.7e-16	58.3	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|227827669|ref|YP_002829449.1|	-	1.6e-06	27.7	1.8	0.00022	20.8	0.1	2.7	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|227827669|ref|YP_002829449.1|	-	0.0056	16.2	0.2	3.9	6.9	0.0	3.0	3	0	0	3	3	3	2	Elongation	factor	Tu	GTP	binding	domain
YchF-GTPase_C	PF06071.13	gi|227827669|ref|YP_002829449.1|	-	0.017	15.3	0.1	0.46	10.7	0.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF933)
Sec3_C	PF09763.9	gi|227827669|ref|YP_002829449.1|	-	0.06	11.7	1.0	0.079	11.3	1.0	1.1	1	0	0	1	1	1	0	Exocyst	complex	component	Sec3
Ribosomal_L15e	PF00827.17	gi|227827670|ref|YP_002829450.1|	-	1.5e-75	253.2	6.1	1.9e-75	252.8	6.1	1.1	1	0	0	1	1	1	1	Ribosomal	L15
DUF4720	PF15846.5	gi|227827670|ref|YP_002829450.1|	-	0.064	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4720)
RNA_binding	PF01877.17	gi|227827671|ref|YP_002829451.1|	-	1.3e-27	96.4	0.9	2e-27	95.8	0.9	1.3	1	0	0	1	1	1	1	RNA	binding
Lipoxygenase	PF00305.19	gi|227827671|ref|YP_002829451.1|	-	0.052	12.0	0.2	0.068	11.6	0.2	1.1	1	0	0	1	1	1	0	Lipoxygenase
MSA-2c	PF12238.8	gi|227827671|ref|YP_002829451.1|	-	0.13	12.3	3.1	0.18	11.8	0.6	2.2	1	1	2	3	3	3	0	Merozoite	surface	antigen	2c
RNase_P_p30	PF01876.16	gi|227827672|ref|YP_002829452.1|	-	3.9e-06	26.5	0.0	0.027	13.9	0.1	2.1	2	0	0	2	2	2	2	RNase	P	subunit	p30
RNase_P_Rpp14	PF01900.19	gi|227827673|ref|YP_002829453.1|	-	9.3e-14	51.5	0.0	1.4e-13	50.9	0.0	1.2	1	0	0	1	1	1	1	Rpp14/Pop5	family
TCR_zetazeta	PF11628.8	gi|227827673|ref|YP_002829453.1|	-	0.0031	17.1	3.6	0.0055	16.3	3.6	1.4	1	0	0	1	1	1	1	T-cell	surface	glycoprotein	CD3	zeta	chain
Proteasome	PF00227.26	gi|227827674|ref|YP_002829454.1|	-	3.7e-63	212.5	0.1	5.4e-63	211.9	0.1	1.2	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|227827674|ref|YP_002829454.1|	-	3.5e-13	49.0	0.9	8.6e-13	47.7	0.5	1.9	2	0	0	2	2	2	1	Proteasome	subunit	A	N-terminal	signature
SBDS	PF01172.18	gi|227827675|ref|YP_002829455.1|	-	3.9e-25	87.7	0.1	8.5e-25	86.7	0.1	1.6	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|227827675|ref|YP_002829455.1|	-	1.4e-21	76.7	1.1	2e-21	76.1	1.1	1.2	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
EFG_C	PF00679.24	gi|227827675|ref|YP_002829455.1|	-	0.0084	16.1	0.0	0.021	14.9	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
UPF0262	PF06793.12	gi|227827675|ref|YP_002829455.1|	-	0.056	13.5	0.1	0.086	12.9	0.1	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0262)
KH_6	PF15985.5	gi|227827676|ref|YP_002829456.1|	-	1.7e-05	25.1	0.0	4.8e-05	23.6	0.0	1.8	1	0	0	1	1	1	1	KH	domain
S1	PF00575.23	gi|227827676|ref|YP_002829456.1|	-	0.00056	20.2	1.0	0.00069	19.9	0.1	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
KH_1	PF00013.29	gi|227827676|ref|YP_002829456.1|	-	0.013	15.3	0.0	0.037	13.9	0.0	1.9	1	1	0	1	1	1	0	KH	domain
NotI	PF12183.8	gi|227827676|ref|YP_002829456.1|	-	0.16	11.3	0.2	1.2	8.4	0.0	1.9	1	1	1	2	2	2	0	Restriction	endonuclease	NotI
RNase_PH	PF01138.21	gi|227827677|ref|YP_002829457.1|	-	1.9e-34	119.0	0.0	2.4e-34	118.7	0.0	1.2	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|227827677|ref|YP_002829457.1|	-	4.7e-14	52.2	0.0	9.4e-14	51.2	0.0	1.5	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.21	gi|227827678|ref|YP_002829458.1|	-	5.2e-28	98.2	0.0	7.5e-28	97.7	0.0	1.3	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|227827678|ref|YP_002829458.1|	-	8.7e-11	41.7	0.1	2.2e-10	40.4	0.1	1.7	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
Ribosomal_L37ae	PF01780.19	gi|227827679|ref|YP_002829459.1|	-	2.5e-25	88.3	6.3	2.7e-25	88.2	6.3	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|227827679|ref|YP_002829459.1|	-	0.0001	22.2	3.9	0.00012	22.0	3.4	1.4	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
DnaJ_CXXCXGXG	PF00684.19	gi|227827679|ref|YP_002829459.1|	-	0.0023	18.2	0.6	0.0031	17.9	0.6	1.2	1	0	0	1	1	1	1	DnaJ	central	domain
Rep_fac-A_C	PF08646.10	gi|227827679|ref|YP_002829459.1|	-	0.0034	17.1	1.7	0.0041	16.9	1.7	1.2	1	0	0	1	1	1	1	Replication	factor-A	C	terminal	domain
DUF4379	PF14311.6	gi|227827679|ref|YP_002829459.1|	-	0.0086	16.4	6.9	0.53	10.7	0.2	2.1	2	0	0	2	2	2	2	Probable	Zinc-ribbon	domain
zf-RRPl_C4	PF17026.5	gi|227827679|ref|YP_002829459.1|	-	0.0093	16.1	0.5	0.013	15.6	0.5	1.2	1	0	0	1	1	1	1	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
OrfB_Zn_ribbon	PF07282.11	gi|227827679|ref|YP_002829459.1|	-	0.017	15.0	0.8	0.021	14.7	0.8	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-TFIIB	PF13453.6	gi|227827679|ref|YP_002829459.1|	-	0.027	13.8	0.5	0.042	13.2	0.5	1.3	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
HMG_CoA_synt_C	PF08540.10	gi|227827679|ref|YP_002829459.1|	-	0.056	13.1	0.0	0.056	13.1	0.0	1.0	1	0	0	1	1	1	0	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
CpXC	PF14353.6	gi|227827679|ref|YP_002829459.1|	-	0.22	11.6	1.6	0.66	10.0	1.8	1.7	1	1	1	2	2	2	0	CpXC	protein
Pcc1	PF09341.10	gi|227827681|ref|YP_002829461.1|	-	0.021	15.0	0.0	0.03	14.5	0.0	1.3	1	0	0	1	1	1	0	Transcription	factor	Pcc1
Melibiase	PF02065.18	gi|227827681|ref|YP_002829461.1|	-	0.052	12.5	0.1	0.059	12.3	0.1	1.0	1	0	0	1	1	1	0	Melibiase
Prefoldin_2	PF01920.20	gi|227827682|ref|YP_002829462.1|	-	2.9e-26	91.5	15.9	3.2e-26	91.3	15.9	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
WXG100	PF06013.12	gi|227827682|ref|YP_002829462.1|	-	0.012	15.9	1.8	2.2	8.6	0.1	2.3	2	0	0	2	2	2	0	Proteins	of	100	residues	with	WXG
MerR-DNA-bind	PF09278.11	gi|227827682|ref|YP_002829462.1|	-	0.026	15.0	9.6	0.17	12.4	1.7	2.6	3	0	0	3	3	3	0	MerR,	DNA	binding
TEX12	PF15219.6	gi|227827682|ref|YP_002829462.1|	-	0.03	14.6	6.0	0.5	10.7	0.2	3.0	1	1	2	3	3	3	0	Testis-expressed	12
Nup54	PF13874.6	gi|227827682|ref|YP_002829462.1|	-	0.049	13.7	3.0	0.32	11.1	0.4	2.2	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
FlaC_arch	PF05377.11	gi|227827682|ref|YP_002829462.1|	-	0.069	13.5	8.7	1.7	9.1	2.3	2.5	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4777	PF16007.5	gi|227827682|ref|YP_002829462.1|	-	0.083	13.2	0.1	2.1	8.7	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4777)
CDC37_C	PF08564.10	gi|227827682|ref|YP_002829462.1|	-	0.087	13.0	5.2	0.11	12.6	4.5	1.6	1	1	0	1	1	1	0	Cdc37	C	terminal	domain
NPV_P10	PF05531.12	gi|227827682|ref|YP_002829462.1|	-	0.091	13.2	7.3	0.093	13.2	1.7	2.4	1	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF424	PF04242.13	gi|227827682|ref|YP_002829462.1|	-	0.13	12.5	1.3	0.47	10.8	0.8	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF424)
TPR_MLP1_2	PF07926.12	gi|227827682|ref|YP_002829462.1|	-	0.13	12.3	12.7	0.47	10.5	4.3	2.2	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
Mod_r	PF07200.13	gi|227827682|ref|YP_002829462.1|	-	0.22	11.6	13.2	6.2	6.9	13.0	2.0	1	1	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF3450	PF11932.8	gi|227827682|ref|YP_002829462.1|	-	1	8.6	10.3	0.59	9.4	0.7	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Nas2_N	PF18265.1	gi|227827682|ref|YP_002829462.1|	-	1.2	9.2	6.8	2.3	8.2	0.3	3.0	2	1	1	3	3	3	0	Nas2	N_terminal	domain
DHR10	PF18595.1	gi|227827682|ref|YP_002829462.1|	-	2.2	8.4	14.0	4	7.5	1.8	2.3	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
DUF2203	PF09969.9	gi|227827682|ref|YP_002829462.1|	-	2.4	8.9	7.1	2.3e+02	2.5	7.1	2.1	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Prefoldin	PF02996.17	gi|227827682|ref|YP_002829462.1|	-	2.6	8.0	11.8	1.8e+02	2.1	11.8	2.3	1	1	0	1	1	1	0	Prefoldin	subunit
DUF4140	PF13600.6	gi|227827682|ref|YP_002829462.1|	-	3.4	8.2	6.5	14	6.2	1.2	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
YabA	PF06156.13	gi|227827682|ref|YP_002829462.1|	-	9.6	6.9	10.1	1.9e+02	2.8	10.1	2.1	1	1	0	1	1	1	0	Initiation	control	protein	YabA
ERCC4	PF02732.15	gi|227827683|ref|YP_002829463.1|	-	8.9e-23	81.2	0.2	1.4e-22	80.5	0.2	1.3	1	0	0	1	1	1	1	ERCC4	domain
HHH_2	PF12826.7	gi|227827683|ref|YP_002829463.1|	-	0.00063	19.8	0.0	0.0016	18.5	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|227827683|ref|YP_002829463.1|	-	0.001	19.6	0.1	0.0059	17.2	0.1	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DUF3641	PF12345.8	gi|227827683|ref|YP_002829463.1|	-	0.14	12.2	0.0	0.32	11.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3641)
GTP_EFTU	PF00009.27	gi|227827684|ref|YP_002829464.1|	-	2.7e-61	206.5	0.0	5.2e-61	205.6	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.18	gi|227827684|ref|YP_002829464.1|	-	2.8e-29	101.4	0.0	2.1e-28	98.6	0.0	2.5	1	1	1	2	2	2	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.6	gi|227827684|ref|YP_002829464.1|	-	3.1e-23	81.7	0.0	7.6e-23	80.4	0.0	1.7	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
EFG_C	PF00679.24	gi|227827684|ref|YP_002829464.1|	-	1.8e-22	79.2	0.0	4.8e-22	77.8	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
GTP_EFTU_D2	PF03144.25	gi|227827684|ref|YP_002829464.1|	-	5.8e-13	49.0	0.0	3.7e-12	46.4	0.0	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|227827684|ref|YP_002829464.1|	-	0.00045	20.3	0.1	0.0013	18.8	0.1	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
RF3_C	PF16658.5	gi|227827684|ref|YP_002829464.1|	-	0.12	12.2	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Class	II	release	factor	RF3,	C-terminal	domain
HAD_2	PF13419.6	gi|227827685|ref|YP_002829465.1|	-	3.8e-25	89.0	0.8	8.6e-25	87.8	0.8	1.6	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|227827685|ref|YP_002829465.1|	-	3.6e-13	50.3	0.0	5.7e-13	49.6	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|227827685|ref|YP_002829465.1|	-	5.5e-07	29.6	0.0	8.9e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|227827685|ref|YP_002829465.1|	-	0.0074	16.4	0.0	0.1	12.7	0.0	2.3	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|227827685|ref|YP_002829465.1|	-	0.048	14.1	0.0	0.15	12.4	0.0	1.9	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
PGM_PMM_II	PF02879.16	gi|227827685|ref|YP_002829465.1|	-	0.072	13.7	0.0	0.17	12.5	0.0	1.6	1	0	0	1	1	1	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
DUF4159	PF13709.6	gi|227827685|ref|YP_002829465.1|	-	0.12	11.8	0.0	0.17	11.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4159)
Peptidase_M28	PF04389.17	gi|227827686|ref|YP_002829466.1|	-	2e-07	30.9	0.1	1.5e-06	28.0	0.1	2.2	1	1	0	1	1	1	1	Peptidase	family	M28
DUF447	PF04289.12	gi|227827687|ref|YP_002829467.1|	-	2.5e-35	121.8	0.1	2.9e-35	121.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Iso_dh	PF00180.20	gi|227827688|ref|YP_002829468.1|	-	8.4e-94	314.6	1.5	9.8e-94	314.3	1.5	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
PdxA	PF04166.12	gi|227827688|ref|YP_002829468.1|	-	0.0075	15.7	0.0	0.019	14.4	0.0	1.7	2	0	0	2	2	2	1	Pyridoxal	phosphate	biosynthetic	protein	PdxA
tRNA-synt_1	PF00133.22	gi|227827689|ref|YP_002829469.1|	-	1.2e-180	601.8	1.3	1.6e-180	601.4	1.3	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|227827689|ref|YP_002829469.1|	-	7.8e-26	90.8	4.9	1.7e-25	89.8	4.9	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|227827689|ref|YP_002829469.1|	-	6.3e-21	74.6	0.9	2.6e-07	29.7	0.0	4.4	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|227827689|ref|YP_002829469.1|	-	0.0021	17.6	0.5	0.007	15.9	0.1	2.0	2	0	0	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|227827689|ref|YP_002829469.1|	-	0.0069	15.8	0.0	0.028	13.8	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
Rpr2	PF04032.16	gi|227827689|ref|YP_002829469.1|	-	0.094	13.0	0.1	0.094	13.0	0.1	2.3	3	0	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-TFIIB	PF13453.6	gi|227827689|ref|YP_002829469.1|	-	1.6	8.1	3.6	7.2	6.0	0.0	3.2	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
Methyltrn_RNA_3	PF02598.17	gi|227827690|ref|YP_002829470.1|	-	1.4e-12	47.7	0.1	1.1e-08	34.9	0.1	2.1	1	1	0	2	2	2	2	Putative	RNA	methyltransferase
Ribosomal_L3	PF00297.22	gi|227827691|ref|YP_002829471.1|	-	1.3e-70	238.2	0.0	1.5e-70	238.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.22	gi|227827692|ref|YP_002829472.1|	-	1.3e-38	132.6	0.1	1.5e-38	132.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Hexokinase_1	PF00349.21	gi|227827692|ref|YP_002829472.1|	-	0.12	12.2	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	Hexokinase
Ribosomal_L23	PF00276.20	gi|227827693|ref|YP_002829473.1|	-	1.1e-12	48.1	4.5	1.3e-11	44.7	4.5	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L23
RepC	PF06504.11	gi|227827693|ref|YP_002829473.1|	-	0.025	13.8	0.1	0.027	13.7	0.1	1.1	1	0	0	1	1	1	0	Replication	protein	C	(RepC)
TusA	PF01206.17	gi|227827693|ref|YP_002829473.1|	-	0.036	13.9	0.1	0.045	13.6	0.1	1.2	1	0	0	1	1	1	0	Sulfurtransferase	TusA
Ribosomal_L2_C	PF03947.18	gi|227827694|ref|YP_002829474.1|	-	2.4e-44	150.6	2.1	3.7e-44	150.0	2.1	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|227827694|ref|YP_002829474.1|	-	6.6e-16	58.0	0.0	2.8e-15	56.0	0.0	2.1	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_S19	PF00203.21	gi|227827695|ref|YP_002829475.1|	-	1.1e-30	105.3	0.8	1.4e-30	105.0	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S19
RNA_pol_Rpb2_4	PF04566.13	gi|227827695|ref|YP_002829475.1|	-	0.009	16.3	0.4	0.017	15.4	0.4	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
Ribosomal_L22	PF00237.19	gi|227827696|ref|YP_002829476.1|	-	3.3e-27	94.7	0.3	5.5e-27	94.0	0.3	1.4	1	1	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S3_C	PF00189.20	gi|227827697|ref|YP_002829477.1|	-	5.9e-24	84.4	1.6	1.1e-23	83.6	1.6	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|227827697|ref|YP_002829477.1|	-	2.3e-15	56.2	0.1	2.3e-15	56.2	0.1	1.9	3	0	0	3	3	3	1	KH	domain
KH_1	PF00013.29	gi|227827697|ref|YP_002829477.1|	-	0.026	14.4	0.8	0.061	13.2	0.3	2.0	2	0	0	2	2	2	0	KH	domain
AtuA	PF07287.11	gi|227827697|ref|YP_002829477.1|	-	0.12	11.1	0.0	0.18	10.5	0.0	1.2	1	0	0	1	1	1	0	Acyclic	terpene	utilisation	family	protein	AtuA
Ribosomal_L29	PF00831.23	gi|227827698|ref|YP_002829478.1|	-	3.1e-20	71.9	7.2	3.7e-20	71.6	7.2	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
DUF29	PF01724.16	gi|227827698|ref|YP_002829478.1|	-	0.057	13.7	0.9	0.061	13.5	0.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF29
UPF0086	PF01868.16	gi|227827699|ref|YP_002829479.1|	-	1.6e-11	44.0	0.0	1.6e-11	43.9	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_S17	PF00366.20	gi|227827700|ref|YP_002829480.1|	-	8.7e-24	83.4	0.5	1.2e-23	83.0	0.5	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_L14	PF00238.19	gi|227827701|ref|YP_002829481.1|	-	1.2e-38	131.9	0.0	1.4e-38	131.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
PAS_3	PF08447.12	gi|227827701|ref|YP_002829481.1|	-	0.072	13.4	0.0	0.13	12.6	0.0	1.4	1	0	0	1	1	1	0	PAS	fold
Ribosomal_L26	PF16906.5	gi|227827702|ref|YP_002829482.1|	-	1.3e-26	92.8	2.9	2.6e-26	91.9	2.9	1.4	1	1	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|227827702|ref|YP_002829482.1|	-	6.2e-07	29.2	0.9	1.3e-06	28.2	0.9	1.7	1	1	0	1	1	1	1	KOW	motif
GTP_EFTU_D2	PF03144.25	gi|227827702|ref|YP_002829482.1|	-	0.0085	16.5	0.2	0.013	15.8	0.2	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
DUF2340	PF10209.9	gi|227827702|ref|YP_002829482.1|	-	0.1	13.1	0.0	0.14	12.6	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2340)
Peptidase_A4	PF01828.17	gi|227827702|ref|YP_002829482.1|	-	0.2	11.1	0.0	0.24	10.9	0.0	1.2	1	0	0	1	1	1	0	Peptidase	A4	family
Ribosomal_S4e	PF00900.20	gi|227827703|ref|YP_002829483.1|	-	4.3e-23	81.0	0.1	9.4e-23	79.9	0.1	1.6	1	0	0	1	1	1	1	Ribosomal	family	S4e
S4	PF01479.25	gi|227827703|ref|YP_002829483.1|	-	5.2e-14	51.7	0.4	2.2e-13	49.7	0.2	2.1	2	0	0	2	2	2	1	S4	domain
RS4NT	PF08071.12	gi|227827703|ref|YP_002829483.1|	-	2.9e-06	27.3	0.3	4.9e-06	26.6	0.3	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4_2	PF13275.6	gi|227827703|ref|YP_002829483.1|	-	0.028	14.2	0.1	0.089	12.6	0.0	1.8	2	0	0	2	2	2	0	S4	domain
DUF5474	PF17568.2	gi|227827703|ref|YP_002829483.1|	-	0.057	13.5	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5474)
Ribosomal_L5_C	PF00673.21	gi|227827704|ref|YP_002829484.1|	-	6.5e-26	90.3	0.0	2e-25	88.8	0.0	1.8	2	0	0	2	2	2	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|227827704|ref|YP_002829484.1|	-	1.1e-20	73.8	0.0	1.9e-20	72.9	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Rho_RNA_bind	PF07497.12	gi|227827704|ref|YP_002829484.1|	-	0.091	12.6	0.0	0.22	11.4	0.0	1.7	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
Ribosomal_S14	PF00253.21	gi|227827705|ref|YP_002829485.1|	-	2.3e-11	43.3	1.9	2.9e-11	42.9	1.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zf-HYPF	PF07503.12	gi|227827705|ref|YP_002829485.1|	-	0.0071	16.1	0.9	0.23	11.3	0.0	2.1	2	0	0	2	2	2	2	HypF	finger
Ribosomal_S8	PF00410.19	gi|227827706|ref|YP_002829486.1|	-	8.1e-26	90.5	0.1	1.3e-25	89.8	0.1	1.3	1	1	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L6	PF00347.23	gi|227827707|ref|YP_002829487.1|	-	1.4e-26	92.9	6.9	8.4e-16	58.4	0.7	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
DNA_pol3_beta	PF00712.19	gi|227827707|ref|YP_002829487.1|	-	0.075	13.2	0.5	3	8.0	0.0	2.7	2	1	0	2	2	2	0	DNA	polymerase	III	beta	subunit,	N-terminal	domain
Ribosomal_L32e	PF01655.18	gi|227827708|ref|YP_002829488.1|	-	3.1e-35	120.9	0.1	4e-35	120.5	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
DDR_swiveling	PF18427.1	gi|227827708|ref|YP_002829488.1|	-	0.075	13.0	0.1	0.11	12.6	0.1	1.2	1	0	0	1	1	1	0	DD-reactivating	factor	swiveling	domain
Ribosomal_L19e	PF01280.20	gi|227827709|ref|YP_002829489.1|	-	2.1e-45	154.3	12.0	2.4e-45	154.2	12.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
MitMem_reg	PF13012.6	gi|227827709|ref|YP_002829489.1|	-	0.08	13.4	0.4	7	7.1	0.0	2.1	1	1	0	2	2	2	0	Maintenance	of	mitochondrial	structure	and	function
Ribosomal_L5e	PF17144.4	gi|227827710|ref|YP_002829490.1|	-	3.5e-29	101.9	3.5	1.5e-19	70.6	1.6	2.5	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18_c	PF14204.6	gi|227827710|ref|YP_002829490.1|	-	1.7e-09	38.5	0.0	3.3e-09	37.6	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	L18	C-terminal	region
Ribosomal_L18p	PF00861.22	gi|227827710|ref|YP_002829490.1|	-	1.3e-05	25.5	0.2	2.2e-05	24.8	0.1	1.5	1	1	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Ribosomal_S5	PF00333.20	gi|227827711|ref|YP_002829491.1|	-	1.3e-23	82.7	1.9	2.2e-23	82.0	1.5	1.6	2	0	0	2	2	2	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.15	gi|227827711|ref|YP_002829491.1|	-	6.4e-19	67.2	0.0	1.7e-18	65.9	0.0	1.7	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L30	PF00327.20	gi|227827712|ref|YP_002829492.1|	-	2.7e-12	46.4	0.1	7.4e-12	45.0	0.0	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L30p/L7e
Ribosomal_L27A	PF00828.19	gi|227827713|ref|YP_002829493.1|	-	1e-15	58.6	0.5	1.4e-15	58.1	0.5	1.2	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
SecY	PF00344.20	gi|227827714|ref|YP_002829494.1|	-	7.7e-56	189.6	28.9	1.1e-55	189.0	28.9	1.2	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|227827714|ref|YP_002829494.1|	-	3.1e-08	33.3	3.1	4.3e-08	32.9	0.6	2.7	2	0	0	2	2	2	1	Plug	domain	of	Sec61p
AAA_17	PF13207.6	gi|227827715|ref|YP_002829495.1|	-	7.5e-31	107.4	0.0	9.9e-31	107.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|227827715|ref|YP_002829495.1|	-	3.6e-07	30.8	0.0	5.5e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|227827715|ref|YP_002829495.1|	-	0.00012	21.8	0.1	0.088	12.5	0.0	2.3	2	1	0	2	2	2	2	Thymidylate	kinase
AAA_28	PF13521.6	gi|227827715|ref|YP_002829495.1|	-	0.00095	19.4	0.0	0.0017	18.6	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|227827715|ref|YP_002829495.1|	-	0.0055	17.1	0.0	0.0078	16.6	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|227827715|ref|YP_002829495.1|	-	0.0057	16.6	0.3	0.013	15.4	0.3	1.5	1	0	0	1	1	1	1	NTPase
AAA_30	PF13604.6	gi|227827715|ref|YP_002829495.1|	-	0.011	15.5	1.0	0.021	14.5	0.1	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|227827715|ref|YP_002829495.1|	-	0.024	14.9	0.3	0.027	14.8	0.3	1.5	1	1	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|227827715|ref|YP_002829495.1|	-	0.077	12.0	0.5	0.13	11.2	0.4	1.4	1	1	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF4224	PF13986.6	gi|227827715|ref|YP_002829495.1|	-	0.15	12.0	0.1	29	4.6	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4224)
AAA_19	PF13245.6	gi|227827715|ref|YP_002829495.1|	-	0.25	11.6	2.2	0.46	10.8	0.7	2.0	1	1	1	2	2	2	0	AAA	domain
SNARE_assoc	PF09335.11	gi|227827716|ref|YP_002829496.1|	-	0.0076	16.7	0.7	0.0076	16.7	0.7	1.5	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
EMC3_TMCO1	PF01956.16	gi|227827716|ref|YP_002829496.1|	-	0.022	14.5	1.0	0.03	14.1	1.0	1.2	1	0	0	1	1	1	0	Integral	membrane	protein	EMC3/TMCO1-like
RGS	PF00615.19	gi|227827716|ref|YP_002829496.1|	-	0.027	14.7	1.7	0.049	13.9	1.7	1.4	1	0	0	1	1	1	0	Regulator	of	G	protein	signaling	domain
DDE_Tnp_1_6	PF13751.6	gi|227827716|ref|YP_002829496.1|	-	0.068	13.4	0.0	0.089	13.0	0.0	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain
DUF2681	PF10883.8	gi|227827716|ref|YP_002829496.1|	-	0.1	13.0	0.1	0.2	12.1	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2681)
Ribosomal_L34e	PF01199.18	gi|227827717|ref|YP_002829497.1|	-	1.8e-20	73.1	0.7	2.2e-20	72.8	0.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L34e
PHD	PF00628.29	gi|227827717|ref|YP_002829497.1|	-	0.066	13.1	0.6	0.22	11.5	0.6	1.7	1	1	0	1	1	1	0	PHD-finger
PurK_C	PF17769.1	gi|227827717|ref|YP_002829497.1|	-	0.11	12.2	0.2	0.15	11.8	0.2	1.3	1	0	0	1	1	1	0	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
Cytidylate_kin2	PF13189.6	gi|227827718|ref|YP_002829498.1|	-	5.5e-20	72.2	0.5	3.9e-18	66.2	0.5	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|227827718|ref|YP_002829498.1|	-	4.1e-16	59.7	0.0	5.6e-16	59.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|227827718|ref|YP_002829498.1|	-	1.9e-11	44.5	0.0	2.4e-11	44.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|227827718|ref|YP_002829498.1|	-	2.3e-11	43.9	0.2	2.8e-08	33.7	0.0	2.1	1	1	1	2	2	2	2	Cytidylate	kinase
AAA	PF00004.29	gi|227827718|ref|YP_002829498.1|	-	1.9e-05	25.1	0.0	4.1e-05	24.0	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SKI	PF01202.22	gi|227827718|ref|YP_002829498.1|	-	1.9e-05	24.8	0.3	3.5e-05	24.0	0.3	1.5	1	1	0	1	1	1	1	Shikimate	kinase
ADK	PF00406.22	gi|227827718|ref|YP_002829498.1|	-	3e-05	24.2	0.0	5.8e-05	23.2	0.0	1.5	2	0	0	2	2	2	1	Adenylate	kinase
AAA_11	PF13086.6	gi|227827718|ref|YP_002829498.1|	-	9.8e-05	22.3	0.0	0.0013	18.6	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|227827718|ref|YP_002829498.1|	-	0.00024	21.3	0.0	0.0007	19.8	0.0	1.6	1	1	1	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|227827718|ref|YP_002829498.1|	-	0.0014	17.9	0.1	0.0021	17.4	0.1	1.4	1	0	0	1	1	1	1	TIP49	P-loop	domain
RNA_helicase	PF00910.22	gi|227827718|ref|YP_002829498.1|	-	0.0022	18.3	0.1	0.011	16.1	0.0	2.1	2	0	0	2	2	2	1	RNA	helicase
AAA_16	PF13191.6	gi|227827718|ref|YP_002829498.1|	-	0.0023	18.3	0.0	0.0051	17.2	0.0	1.6	2	0	0	2	2	2	1	AAA	ATPase	domain
DUF2075	PF09848.9	gi|227827718|ref|YP_002829498.1|	-	0.0025	17.1	0.0	0.0033	16.7	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
KTI12	PF08433.10	gi|227827718|ref|YP_002829498.1|	-	0.0032	17.0	0.2	0.024	14.1	0.0	2.0	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_28	PF13521.6	gi|227827718|ref|YP_002829498.1|	-	0.0043	17.3	0.0	0.0051	17.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Zot	PF05707.12	gi|227827718|ref|YP_002829498.1|	-	0.0049	16.5	0.0	0.0076	15.9	0.0	1.3	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
NTPase_1	PF03266.15	gi|227827718|ref|YP_002829498.1|	-	0.0052	16.7	0.0	0.0082	16.1	0.0	1.4	1	0	0	1	1	1	1	NTPase
RuvB_N	PF05496.12	gi|227827718|ref|YP_002829498.1|	-	0.0055	16.5	0.0	0.0085	15.9	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|227827718|ref|YP_002829498.1|	-	0.0063	16.8	0.0	0.0093	16.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Hydin_ADK	PF17213.3	gi|227827718|ref|YP_002829498.1|	-	0.0079	16.5	0.1	0.012	15.9	0.1	1.3	1	0	0	1	1	1	1	Hydin	Adenylate	kinase-like	domain
CoaE	PF01121.20	gi|227827718|ref|YP_002829498.1|	-	0.011	15.4	0.1	1.4	8.5	0.1	2.1	1	1	1	2	2	2	0	Dephospho-CoA	kinase
Rad17	PF03215.15	gi|227827718|ref|YP_002829498.1|	-	0.015	15.2	0.1	0.031	14.2	0.0	1.7	2	0	0	2	2	2	0	Rad17	P-loop	domain
IPT	PF01745.16	gi|227827718|ref|YP_002829498.1|	-	0.016	14.6	0.2	0.035	13.5	0.0	1.7	2	0	0	2	2	2	0	Isopentenyl	transferase
DUF2532	PF10811.8	gi|227827718|ref|YP_002829498.1|	-	0.021	14.9	1.0	0.056	13.5	0.5	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2532)
CbiA	PF01656.23	gi|227827718|ref|YP_002829498.1|	-	0.021	14.9	0.3	0.23	11.5	0.0	2.3	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|227827718|ref|YP_002829498.1|	-	0.026	13.8	0.1	0.041	13.2	0.1	1.3	1	0	0	1	1	1	0	Zeta	toxin
dNK	PF01712.19	gi|227827718|ref|YP_002829498.1|	-	0.035	14.0	1.2	1.2	9.0	0.0	2.2	2	0	0	2	2	2	0	Deoxynucleoside	kinase
T2SSE	PF00437.20	gi|227827718|ref|YP_002829498.1|	-	0.054	12.5	0.1	0.24	10.4	0.1	1.9	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|227827718|ref|YP_002829498.1|	-	0.063	13.2	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
IstB_IS21	PF01695.17	gi|227827718|ref|YP_002829498.1|	-	0.12	12.1	0.1	0.32	10.7	0.0	1.7	1	1	1	2	2	2	0	IstB-like	ATP	binding	protein
APS_kinase	PF01583.20	gi|227827718|ref|YP_002829498.1|	-	0.13	12.1	0.0	0.23	11.3	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_30	PF13604.6	gi|227827718|ref|YP_002829498.1|	-	0.15	11.8	0.1	1.8	8.2	0.1	2.0	1	1	1	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|227827718|ref|YP_002829498.1|	-	0.15	11.6	0.0	0.21	11.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|227827718|ref|YP_002829498.1|	-	0.16	11.9	0.0	0.28	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Viral_helicase1	PF01443.18	gi|227827718|ref|YP_002829498.1|	-	0.21	11.3	0.0	0.28	10.9	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Archease	PF01951.16	gi|227827721|ref|YP_002829501.1|	-	2.3e-45	154.2	0.3	2.6e-45	154.1	0.3	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
Peptidase_M54	PF07998.11	gi|227827722|ref|YP_002829502.1|	-	2.8e-61	206.9	2.8	3.2e-61	206.7	2.8	1.0	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.24	gi|227827722|ref|YP_002829502.1|	-	0.0029	17.5	0.0	0.003	17.4	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Peptidase_M43	PF05572.13	gi|227827722|ref|YP_002829502.1|	-	0.0058	16.6	0.1	0.009	15.9	0.1	1.3	1	0	0	1	1	1	1	Pregnancy-associated	plasma	protein-A
DUF4953	PF16313.5	gi|227827722|ref|YP_002829502.1|	-	0.021	14.1	0.1	0.03	13.5	0.1	1.2	1	0	0	1	1	1	0	Met-zincin
Peptidase_M66	PF10462.9	gi|227827722|ref|YP_002829502.1|	-	0.046	12.7	0.0	0.061	12.3	0.0	1.2	1	0	0	1	1	1	0	Peptidase	M66
Metallopep	PF12044.8	gi|227827722|ref|YP_002829502.1|	-	0.049	12.2	0.1	0.063	11.9	0.1	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
Reprolysin_5	PF13688.6	gi|227827722|ref|YP_002829502.1|	-	0.087	13.0	0.0	0.12	12.6	0.0	1.3	1	0	0	1	1	1	0	Metallo-peptidase	family	M12
Reprolysin_4	PF13583.6	gi|227827722|ref|YP_002829502.1|	-	0.17	11.5	0.0	0.25	11.0	0.0	1.2	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
MacB_PCD	PF12704.7	gi|227827723|ref|YP_002829503.1|	-	6.5e-18	65.8	9.4	6.5e-18	65.8	9.4	2.2	2	1	1	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|227827723|ref|YP_002829503.1|	-	8.2e-13	48.7	9.8	8.2e-13	48.7	9.8	4.3	3	1	1	4	4	4	1	FtsX-like	permease	family
Glu_synthase	PF01645.17	gi|227827724|ref|YP_002829504.1|	-	5.9e-102	341.5	1.4	2.2e-98	329.8	0.6	2.1	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.14	gi|227827724|ref|YP_002829504.1|	-	3.3e-19	69.4	0.9	1.6e-06	27.8	0.0	3.3	3	0	0	3	3	3	3	Glutamate	synthase	central	domain
FMN_dh	PF01070.18	gi|227827724|ref|YP_002829504.1|	-	4.6e-06	25.9	13.6	1.7e-05	24.0	5.7	3.1	4	0	0	4	4	4	2	FMN-dependent	dehydrogenase
DHO_dh	PF01180.21	gi|227827724|ref|YP_002829504.1|	-	0.0041	16.4	2.0	0.0098	15.1	2.0	1.6	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
NanE	PF04131.14	gi|227827724|ref|YP_002829504.1|	-	0.0059	15.8	0.2	0.073	12.3	0.1	2.3	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
IMPDH	PF00478.25	gi|227827724|ref|YP_002829504.1|	-	0.038	13.0	9.5	0.014	14.4	5.8	2.1	3	0	0	3	3	3	0	IMP	dehydrogenase	/	GMP	reductase	domain
GDPD_2	PF13653.6	gi|227827724|ref|YP_002829504.1|	-	0.11	13.0	0.9	5.6	7.5	0.0	3.5	4	0	0	4	4	4	0	Glycerophosphoryl	diester	phosphodiesterase	family
Fibroin_P25	PF07294.11	gi|227827724|ref|YP_002829504.1|	-	0.16	12.1	0.0	0.25	11.4	0.0	1.2	1	0	0	1	1	1	0	Fibroin	P25
NMO	PF03060.15	gi|227827724|ref|YP_002829504.1|	-	0.22	10.9	4.7	0.45	9.8	4.7	1.5	1	0	0	1	1	1	0	Nitronate	monooxygenase
GXGXG	PF01493.19	gi|227827725|ref|YP_002829505.1|	-	2.7e-23	82.5	7.6	5.1e-23	81.6	7.6	1.3	1	0	0	1	1	1	1	GXGXG	motif
GATase_2	PF00310.21	gi|227827725|ref|YP_002829505.1|	-	3.9e-08	32.4	0.0	2.7e-06	26.4	0.0	2.3	1	1	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.6	gi|227827725|ref|YP_002829505.1|	-	1.2e-07	32.0	0.0	2.1e-06	28.0	0.0	2.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
SHOCT	PF09851.9	gi|227827725|ref|YP_002829505.1|	-	0.029	14.1	5.9	0.046	13.5	0.2	2.8	2	0	0	2	2	2	0	Short	C-terminal	domain
GATase_7	PF13537.6	gi|227827725|ref|YP_002829505.1|	-	0.07	13.0	0.0	0.85	9.5	0.0	2.3	1	1	0	1	1	1	0	Glutamine	amidotransferase	domain
RRM_1	PF00076.22	gi|227827725|ref|YP_002829505.1|	-	0.11	12.3	0.0	0.44	10.4	0.0	2.1	1	1	0	1	1	1	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
Glycos_transf_1	PF00534.20	gi|227827726|ref|YP_002829506.1|	-	9.3e-21	74.1	0.7	1.7e-20	73.3	0.7	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227827726|ref|YP_002829506.1|	-	3e-07	30.9	0.0	5.2e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227827726|ref|YP_002829506.1|	-	0.0015	18.5	0.1	0.0029	17.6	0.1	1.6	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|227827726|ref|YP_002829506.1|	-	0.0055	17.1	0.0	0.013	15.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF3206	PF11472.8	gi|227827726|ref|YP_002829506.1|	-	0.12	12.4	0.2	0.43	10.6	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3206)
Glycos_transf_2	PF00535.26	gi|227827727|ref|YP_002829507.1|	-	3e-10	40.2	0.3	4.5e-10	39.6	0.3	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|227827727|ref|YP_002829507.1|	-	1.7e-05	24.4	3.2	2.8e-05	23.7	0.5	2.2	2	1	1	3	3	3	1	Glycosyltransferase	like	family	2
Anp1	PF03452.14	gi|227827727|ref|YP_002829507.1|	-	0.00018	21.0	0.8	0.00024	20.6	0.8	1.1	1	0	0	1	1	1	1	Anp1
Glyco_tranf_2_3	PF13641.6	gi|227827727|ref|YP_002829507.1|	-	0.0006	19.8	0.2	0.0012	18.8	0.1	1.5	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|227827727|ref|YP_002829507.1|	-	0.00065	19.7	0.4	0.96	9.3	0.1	2.2	1	1	1	2	2	2	2	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.6	gi|227827727|ref|YP_002829507.1|	-	0.0034	17.9	0.2	0.0057	17.1	0.2	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|227827727|ref|YP_002829507.1|	-	0.021	14.3	0.1	0.051	13.1	0.1	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	family	21
Amidohydro_1	PF01979.20	gi|227827728|ref|YP_002829508.1|	-	9.6e-61	206.0	0.1	1.1e-60	205.8	0.1	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|227827728|ref|YP_002829508.1|	-	1.3e-14	54.6	0.0	2.8e-12	46.9	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|227827728|ref|YP_002829508.1|	-	0.00025	20.5	0.0	0.00046	19.6	0.0	1.4	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Diphthami_syn_2	PF01902.17	gi|227827729|ref|YP_002829509.1|	-	1.8e-56	191.1	0.0	2.1e-56	190.9	0.0	1.0	1	0	0	1	1	1	1	Diphthamide	synthase
QueC	PF06508.13	gi|227827729|ref|YP_002829509.1|	-	0.018	14.5	0.0	0.068	12.7	0.0	1.9	1	1	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
DAHP_snth_FXD	PF18152.1	gi|227827729|ref|YP_002829509.1|	-	0.054	13.3	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	DAHP	synthase	ferredoxin-like	domain
NTP_transf_3	PF12804.7	gi|227827730|ref|YP_002829510.1|	-	4.7e-19	69.3	0.0	5.6e-19	69.0	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
MoeA_N	PF03453.17	gi|227827731|ref|YP_002829511.1|	-	6.7e-34	116.9	0.0	9.8e-34	116.4	0.0	1.2	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|227827731|ref|YP_002829511.1|	-	8e-17	61.2	0.1	1.3e-16	60.5	0.1	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|227827731|ref|YP_002829511.1|	-	0.03	14.5	0.0	0.17	12.1	0.0	2.2	2	0	0	2	2	2	0	MoeA	C-terminal	region	(domain	IV)
7TMR-HDED	PF07697.11	gi|227827731|ref|YP_002829511.1|	-	0.053	13.6	0.1	0.17	12.0	0.1	1.8	1	0	0	1	1	1	0	7TM-HD	extracellular
MobB	PF03205.14	gi|227827732|ref|YP_002829512.1|	-	8.3e-20	71.0	0.3	1.3e-19	70.4	0.3	1.4	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_7	PF12775.7	gi|227827732|ref|YP_002829512.1|	-	0.0037	16.8	0.0	0.0061	16.1	0.0	1.2	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
NTPase_1	PF03266.15	gi|227827732|ref|YP_002829512.1|	-	0.021	14.8	0.3	0.099	12.6	0.0	1.9	2	0	0	2	2	2	0	NTPase
ATPase_2	PF01637.18	gi|227827732|ref|YP_002829512.1|	-	0.023	14.6	0.8	0.032	14.2	0.8	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|227827732|ref|YP_002829512.1|	-	0.03	14.7	0.0	0.046	14.1	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|227827732|ref|YP_002829512.1|	-	0.033	14.6	0.1	0.066	13.6	0.1	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TrwB_AAD_bind	PF10412.9	gi|227827732|ref|YP_002829512.1|	-	0.043	12.7	0.0	0.065	12.1	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CbiA	PF01656.23	gi|227827732|ref|YP_002829512.1|	-	0.047	13.8	0.1	0.067	13.3	0.1	1.3	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBS	PF00571.28	gi|227827733|ref|YP_002829513.1|	-	8.4e-24	83.8	7.8	5.3e-09	36.4	0.1	4.1	4	0	0	4	4	4	3	CBS	domain
Methyltransf_11	PF08241.12	gi|227827734|ref|YP_002829514.1|	-	4.3e-16	59.3	0.0	6.9e-16	58.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827734|ref|YP_002829514.1|	-	1.8e-12	47.8	0.0	3.2e-12	47.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227827734|ref|YP_002829514.1|	-	2.6e-08	33.8	0.0	4.4e-08	33.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227827734|ref|YP_002829514.1|	-	4.7e-08	33.7	0.0	8.7e-08	32.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227827734|ref|YP_002829514.1|	-	4.5e-06	26.6	0.0	6.5e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227827734|ref|YP_002829514.1|	-	0.00049	19.5	0.0	0.0007	19.0	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|227827734|ref|YP_002829514.1|	-	0.026	14.4	0.0	0.053	13.4	0.0	1.6	2	0	0	2	2	2	0	Hypothetical	methyltransferase
DUF2407_C	PF13373.6	gi|227827735|ref|YP_002829515.1|	-	4.2	7.5	5.6	0.54	10.4	1.0	1.8	2	1	1	3	3	3	0	DUF2407	C-terminal	domain
DUF456	PF04306.13	gi|227827736|ref|YP_002829516.1|	-	0.00022	21.5	2.8	0.00031	21.1	2.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
Gly-zipper_Omp	PF13488.6	gi|227827736|ref|YP_002829516.1|	-	0.0029	17.6	8.0	0.0042	17.0	8.0	1.3	1	0	0	1	1	1	1	Glycine	zipper
Bacteriocin_IIc	PF10439.9	gi|227827736|ref|YP_002829516.1|	-	0.0039	17.3	5.7	0.0067	16.5	5.7	1.4	1	0	0	1	1	1	1	Bacteriocin	class	II	with	double-glycine	leader	peptide
Rick_17kDa_Anti	PF05433.15	gi|227827736|ref|YP_002829516.1|	-	7.9	6.4	16.2	26	4.8	16.5	1.8	1	1	0	1	1	1	0	Glycine	zipper	2TM	domain
PP_kinase_C_1	PF17941.1	gi|227827737|ref|YP_002829517.1|	-	0.0089	15.6	0.1	0.011	15.3	0.1	1.1	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain	1
DUF2232	PF09991.9	gi|227827737|ref|YP_002829517.1|	-	0.034	13.3	0.1	0.036	13.3	0.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2232)
Fe_dep_repr_C	PF02742.15	gi|227827738|ref|YP_002829518.1|	-	1.4e-27	95.5	1.2	3.4e-27	94.3	0.3	2.0	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|227827738|ref|YP_002829518.1|	-	1.4e-11	44.4	0.1	2.3e-10	40.5	0.1	2.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|227827738|ref|YP_002829518.1|	-	2.6e-08	33.7	0.0	1.3e-07	31.4	0.1	2.1	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|227827738|ref|YP_002829518.1|	-	2.2e-07	30.6	0.0	5.2e-07	29.4	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|227827738|ref|YP_002829518.1|	-	3.1e-07	29.8	0.1	3.5e-05	23.3	0.1	2.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|227827738|ref|YP_002829518.1|	-	6.6e-07	29.1	0.0	2.6e-06	27.2	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_DeoR	PF08220.12	gi|227827738|ref|YP_002829518.1|	-	2e-05	24.2	0.0	4.5e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|227827738|ref|YP_002829518.1|	-	2.8e-05	24.5	0.0	6.9e-05	23.3	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|227827738|ref|YP_002829518.1|	-	2.8e-05	24.0	0.2	8.2e-05	22.5	0.2	1.9	1	1	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|227827738|ref|YP_002829518.1|	-	7.1e-05	22.6	0.1	0.00018	21.3	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_41	PF14502.6	gi|227827738|ref|YP_002829518.1|	-	7.5e-05	22.3	0.3	0.0013	18.4	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|227827738|ref|YP_002829518.1|	-	8.8e-05	22.3	0.1	0.00015	21.5	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
GntR	PF00392.21	gi|227827738|ref|YP_002829518.1|	-	0.00012	21.7	0.0	0.00066	19.3	0.0	2.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|227827738|ref|YP_002829518.1|	-	0.00034	20.5	0.3	0.0014	18.6	0.1	2.2	1	1	1	2	2	2	1	Crp-like	helix-turn-helix	domain
FeoA	PF04023.14	gi|227827738|ref|YP_002829518.1|	-	0.00047	20.4	2.0	0.0009	19.5	0.7	2.1	2	1	0	2	2	2	1	FeoA	domain
DUF2250	PF10007.9	gi|227827738|ref|YP_002829518.1|	-	0.00066	19.7	0.3	0.0014	18.7	0.3	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_36	PF13730.6	gi|227827738|ref|YP_002829518.1|	-	0.0012	18.8	0.0	0.0032	17.4	0.1	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
Phage_rep_org_N	PF09681.10	gi|227827738|ref|YP_002829518.1|	-	0.0015	18.4	0.1	0.0026	17.7	0.1	1.4	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Mrr_N	PF14338.6	gi|227827738|ref|YP_002829518.1|	-	0.0023	18.0	0.0	0.005	16.9	0.0	1.7	1	0	0	1	1	1	1	Mrr	N-terminal	domain
DUF505	PF04458.12	gi|227827738|ref|YP_002829518.1|	-	0.0024	16.3	0.1	0.0034	15.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
B-block_TFIIIC	PF04182.12	gi|227827738|ref|YP_002829518.1|	-	0.0026	17.9	0.0	0.0056	16.8	0.0	1.5	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
PadR	PF03551.14	gi|227827738|ref|YP_002829518.1|	-	0.0034	17.3	0.2	0.015	15.2	0.1	2.3	2	1	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
Ribosomal_S19e	PF01090.19	gi|227827738|ref|YP_002829518.1|	-	0.0036	17.0	0.0	0.0057	16.4	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S19e
HTH_20	PF12840.7	gi|227827738|ref|YP_002829518.1|	-	0.006	16.6	0.0	0.015	15.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|227827738|ref|YP_002829518.1|	-	0.0076	16.4	0.1	0.017	15.3	0.1	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_28	PF13518.6	gi|227827738|ref|YP_002829518.1|	-	0.014	15.5	0.0	0.049	13.8	0.0	1.9	2	1	0	2	2	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|227827738|ref|YP_002829518.1|	-	0.015	15.2	0.0	0.052	13.5	0.0	1.9	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_11	PF08279.12	gi|227827738|ref|YP_002829518.1|	-	0.018	15.0	0.2	0.13	12.2	0.1	2.5	1	1	1	2	2	2	0	HTH	domain
Rrf2	PF02082.20	gi|227827738|ref|YP_002829518.1|	-	0.027	14.8	0.1	0.093	13.1	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
AAA_assoc_C	PF09821.9	gi|227827738|ref|YP_002829518.1|	-	0.027	15.0	0.1	0.057	14.0	0.1	1.6	1	0	0	1	1	1	0	C-terminal	AAA-associated	domain
HTH_micro	PF17007.5	gi|227827738|ref|YP_002829518.1|	-	0.028	13.2	0.1	0.041	12.7	0.1	1.3	1	0	0	1	1	1	0	HTH-like
FeoC	PF09012.10	gi|227827738|ref|YP_002829518.1|	-	0.05	13.7	0.1	0.098	12.7	0.1	1.5	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HrcA_DNA-bdg	PF03444.15	gi|227827738|ref|YP_002829518.1|	-	0.054	13.2	0.0	0.16	11.7	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
EAP30	PF04157.16	gi|227827738|ref|YP_002829518.1|	-	0.14	11.4	0.0	2.1	7.5	0.0	2.1	1	1	0	1	1	1	0	EAP30/Vps36	family
HTH_IclR	PF09339.10	gi|227827738|ref|YP_002829518.1|	-	0.15	11.8	0.2	0.56	10.1	0.0	2.1	3	0	0	3	3	1	0	IclR	helix-turn-helix	domain
TrkA_C	PF02080.21	gi|227827738|ref|YP_002829518.1|	-	0.24	11.3	0.1	0.24	11.3	0.1	2.4	3	0	0	3	3	3	0	TrkA-C	domain
DUF2250	PF10007.9	gi|227827739|ref|YP_002829519.1|	-	2.4e-05	24.4	0.2	6.5e-05	23.0	0.2	1.7	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Exotox-A_cataly	PF09009.10	gi|227827739|ref|YP_002829519.1|	-	0.054	13.3	0.0	0.065	13.0	0.0	1.1	1	0	0	1	1	1	0	Exotoxin	A	catalytic
DUF4147	PF13660.6	gi|227827740|ref|YP_002829520.1|	-	2.1e-55	187.8	0.0	2.8e-55	187.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|227827740|ref|YP_002829520.1|	-	7e-25	87.3	0.3	1.6e-24	86.2	0.3	1.7	1	0	0	1	1	1	1	MOFRL	family
Oxidored_q6	PF01058.22	gi|227827741|ref|YP_002829521.1|	-	8e-20	71.0	0.0	1e-19	70.6	0.0	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Sua5_yciO_yrdC	PF01300.18	gi|227827742|ref|YP_002829522.1|	-	9.3e-57	191.4	0.1	1.3e-56	190.9	0.1	1.2	1	0	0	1	1	1	1	Telomere	recombination
SUA5	PF03481.13	gi|227827742|ref|YP_002829522.1|	-	1.5e-25	90.3	0.0	3e-25	89.4	0.0	1.5	1	0	0	1	1	1	1	Putative	GTP-binding	controlling	metal-binding
Glyco_trans_4_2	PF13477.6	gi|227827742|ref|YP_002829522.1|	-	0.0049	16.9	0.0	0.01	15.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_28	PF03033.20	gi|227827742|ref|YP_002829522.1|	-	0.023	14.8	0.0	0.055	13.5	0.0	1.6	1	0	0	1	1	1	0	Glycosyltransferase	family	28	N-terminal	domain
Glyco_transf_4	PF13439.6	gi|227827742|ref|YP_002829522.1|	-	0.056	13.4	0.0	0.12	12.4	0.0	1.5	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Oxidored_nitro	PF00148.19	gi|227827742|ref|YP_002829522.1|	-	0.098	11.4	0.0	0.15	10.8	0.0	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
BPL_LplA_LipB	PF03099.19	gi|227827743|ref|YP_002829523.1|	-	4.7e-14	52.4	0.0	6.5e-14	52.0	0.0	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
PmbA_TldD	PF01523.16	gi|227827744|ref|YP_002829524.1|	-	9.5e-31	107.7	0.1	2.1e-30	106.6	0.0	1.5	2	0	0	2	2	2	1	Putative	modulator	of	DNA	gyrase
DUF3148	PF11347.8	gi|227827744|ref|YP_002829524.1|	-	0.083	12.7	0.0	0.72	9.6	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3148)
PmbA_TldD	PF01523.16	gi|227827745|ref|YP_002829525.1|	-	6e-40	137.8	1.3	8.7e-40	137.3	1.3	1.2	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
Lipase_GDSL_3	PF14606.6	gi|227827745|ref|YP_002829525.1|	-	0.036	14.2	1.1	2.1	8.4	0.0	2.7	2	1	0	2	2	2	0	GDSL-like	Lipase/Acylhydrolase	family
NikR_C	PF08753.11	gi|227827746|ref|YP_002829526.1|	-	3.9e-23	81.4	0.8	5.5e-23	80.9	0.8	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|227827746|ref|YP_002829526.1|	-	0.00039	20.2	0.0	0.0008	19.3	0.0	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF2811	PF10929.8	gi|227827746|ref|YP_002829526.1|	-	0.0015	18.8	0.0	0.0021	18.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2811)
Urm1	PF09138.11	gi|227827746|ref|YP_002829526.1|	-	0.063	13.6	0.1	0.09	13.1	0.1	1.2	1	0	0	1	1	1	0	Urm1	(Ubiquitin	related	modifier)
IFNGR1	PF07140.11	gi|227827746|ref|YP_002829526.1|	-	0.11	12.6	0.1	0.15	12.2	0.1	1.3	1	0	0	1	1	1	0	Interferon	gamma	receptor	(IFNGR1)
B3_4	PF03483.17	gi|227827747|ref|YP_002829527.1|	-	2.8e-31	108.5	0.0	4.5e-31	107.9	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
BING4CT	PF08149.11	gi|227827747|ref|YP_002829527.1|	-	0.022	14.5	0.1	0.071	12.9	0.1	1.8	1	1	0	1	1	1	0	BING4CT	(NUC141)	domain
Homoserine_dh	PF00742.19	gi|227827748|ref|YP_002829528.1|	-	7.1e-49	166.1	0.0	9.4e-49	165.7	0.0	1.2	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.16	gi|227827748|ref|YP_002829528.1|	-	1.6e-11	44.8	0.0	2.8e-11	44.1	0.0	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
SLH	PF00395.20	gi|227827748|ref|YP_002829528.1|	-	0.013	15.5	0.0	0.095	12.7	0.0	2.5	2	0	0	2	2	2	0	S-layer	homology	domain
UbiA	PF01040.18	gi|227827749|ref|YP_002829529.1|	-	6.4e-46	156.7	24.1	8.5e-46	156.3	24.1	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
G0-G1_switch_2	PF15103.6	gi|227827749|ref|YP_002829529.1|	-	0.68	10.4	1.8	0.77	10.2	0.1	1.9	2	0	0	2	2	2	0	G0/G1	switch	protein	2
ECH_1	PF00378.20	gi|227827751|ref|YP_002829531.1|	-	7.6e-60	202.3	0.0	8.4e-60	202.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|227827751|ref|YP_002829531.1|	-	4e-38	131.7	0.0	4.8e-38	131.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
SDH_sah	PF01972.16	gi|227827751|ref|YP_002829531.1|	-	0.012	14.7	0.0	0.32	10.0	0.0	2.1	2	0	0	2	2	2	0	Serine	dehydrogenase	proteinase
Radical_SAM	PF04055.21	gi|227827752|ref|YP_002829532.1|	-	7.2e-18	65.5	0.1	1.5e-16	61.2	0.0	2.6	3	0	0	3	3	3	1	Radical	SAM	superfamily
zf-ribbon_3	PF13248.6	gi|227827752|ref|YP_002829532.1|	-	0.017	14.5	6.4	0.089	12.2	0.1	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Fer4_12	PF13353.6	gi|227827752|ref|YP_002829532.1|	-	0.026	14.8	0.0	0.066	13.5	0.0	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
DZR	PF12773.7	gi|227827752|ref|YP_002829532.1|	-	0.14	12.2	5.1	0.23	11.5	0.0	2.9	3	0	0	3	3	3	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|227827752|ref|YP_002829532.1|	-	0.36	10.4	6.4	0.22	11.0	2.4	2.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-C2H2_11	PF16622.5	gi|227827752|ref|YP_002829532.1|	-	1.1	9.0	4.8	0.84	9.5	0.2	2.6	2	0	0	2	2	2	0	zinc-finger	C2H2-type
DpnI	PF06044.12	gi|227827752|ref|YP_002829532.1|	-	1.1	8.8	3.4	0.31	10.7	0.2	1.6	2	0	0	2	2	2	0	Dam-replacing	family
NOB1_Zn_bind	PF08772.11	gi|227827752|ref|YP_002829532.1|	-	1.5	9.1	5.8	1.6	8.9	0.7	2.8	2	1	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF309	PF03745.14	gi|227827753|ref|YP_002829533.1|	-	1e-14	53.9	0.1	1.4e-14	53.5	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
DUF2851	PF11013.8	gi|227827753|ref|YP_002829533.1|	-	0.027	13.5	0.0	0.031	13.3	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2851)
FRP	PF18032.1	gi|227827753|ref|YP_002829533.1|	-	0.031	14.9	0.2	0.043	14.4	0.2	1.2	1	0	0	1	1	1	0	Photoprotection	regulator	fluorescence	recovery	protein
PurS	PF02700.14	gi|227827753|ref|YP_002829533.1|	-	0.059	13.6	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	Phosphoribosylformylglycinamidine	(FGAM)	synthase
Adenosine_kin	PF04008.14	gi|227827754|ref|YP_002829534.1|	-	2.5e-78	261.2	0.3	2.8e-78	261.0	0.3	1.0	1	0	0	1	1	1	1	Adenosine	specific	kinase
DUF5625	PF18539.1	gi|227827755|ref|YP_002829535.1|	-	0.026	14.8	1.1	0.14	12.5	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5625)
DUF4198	PF10670.9	gi|227827755|ref|YP_002829535.1|	-	0.1	13.0	0.0	0.24	11.7	0.0	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4198)
Lipocalin_4	PF13648.6	gi|227827755|ref|YP_002829535.1|	-	0.36	11.8	7.0	2.8	9.0	2.8	2.1	1	1	1	2	2	2	0	Lipocalin-like	domain
DUF658	PF04936.12	gi|227827756|ref|YP_002829536.1|	-	0.0046	16.7	0.0	0.0066	16.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF658)
Pam17	PF08566.10	gi|227827756|ref|YP_002829536.1|	-	0.26	11.1	0.6	0.42	10.4	0.3	1.6	1	1	0	1	1	1	0	Mitochondrial	import	protein	Pam17
Cupin_2	PF07883.11	gi|227827757|ref|YP_002829537.1|	-	2.1e-15	56.2	0.1	2.8e-15	55.8	0.1	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|227827757|ref|YP_002829537.1|	-	6.3e-09	35.6	0.1	1.1e-08	34.9	0.1	1.3	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.19	gi|227827757|ref|YP_002829537.1|	-	2.6e-08	33.8	0.0	4.2e-08	33.2	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.8	gi|227827757|ref|YP_002829537.1|	-	0.00024	21.2	0.0	0.00041	20.5	0.0	1.3	1	0	0	1	1	1	1	Mif2/CENP-C	like
ARD	PF03079.14	gi|227827757|ref|YP_002829537.1|	-	0.0017	18.5	1.1	0.0034	17.6	0.1	1.8	2	0	0	2	2	2	1	ARD/ARD'	family
DMSP_lyase	PF16867.5	gi|227827757|ref|YP_002829537.1|	-	0.0042	16.8	0.0	0.0056	16.3	0.0	1.2	1	0	0	1	1	1	1	Dimethlysulfonioproprionate	lyase
Auxin_BP	PF02041.16	gi|227827757|ref|YP_002829537.1|	-	0.0062	16.2	0.1	0.017	14.8	0.1	1.7	1	1	0	1	1	1	1	Auxin	binding	protein
Asp_Arg_Hydrox	PF05118.15	gi|227827757|ref|YP_002829537.1|	-	0.016	15.0	0.1	0.037	13.8	0.1	1.9	1	1	0	1	1	1	0	Aspartyl/Asparaginyl	beta-hydroxylase
Cupin_7	PF12973.7	gi|227827757|ref|YP_002829537.1|	-	0.066	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	ChrR	Cupin-like	domain
GPI	PF06560.11	gi|227827757|ref|YP_002829537.1|	-	0.089	12.1	0.0	0.15	11.3	0.0	1.4	1	0	0	1	1	1	0	Glucose-6-phosphate	isomerase	(GPI)
MannoseP_isomer	PF01050.18	gi|227827757|ref|YP_002829537.1|	-	0.12	12.2	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
3HCDH_N	PF02737.18	gi|227827758|ref|YP_002829538.1|	-	5.2e-50	169.8	0.0	7.3e-50	169.3	0.0	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|227827758|ref|YP_002829538.1|	-	9.6e-20	71.0	0.1	2.4e-19	69.7	0.1	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|227827758|ref|YP_002829538.1|	-	8.5e-06	26.0	0.1	0.00011	22.4	0.0	2.2	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|227827758|ref|YP_002829538.1|	-	0.00042	20.3	0.0	0.00081	19.4	0.0	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.27	gi|227827758|ref|YP_002829538.1|	-	0.016	15.8	0.1	0.049	14.2	0.1	1.9	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|227827758|ref|YP_002829538.1|	-	0.019	15.4	0.1	0.043	14.3	0.0	1.6	2	0	0	2	2	2	0	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|227827758|ref|YP_002829538.1|	-	0.037	13.7	0.3	0.071	12.7	0.0	1.7	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_2	PF07992.14	gi|227827758|ref|YP_002829538.1|	-	0.068	12.4	0.0	0.12	11.5	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.20	gi|227827758|ref|YP_002829538.1|	-	0.12	12.4	0.7	0.8	9.8	0.7	2.3	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
AAA_14	PF13173.6	gi|227827758|ref|YP_002829538.1|	-	0.13	12.3	0.2	0.3	11.1	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
Translin	PF01997.16	gi|227827759|ref|YP_002829539.1|	-	2.8e-05	24.2	0.2	0.0014	18.6	0.0	2.2	1	1	1	2	2	2	1	Translin	family
CREPT	PF16566.5	gi|227827759|ref|YP_002829539.1|	-	0.03	14.5	0.6	0.05	13.8	0.1	1.6	2	0	0	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
PhoU	PF01895.19	gi|227827759|ref|YP_002829539.1|	-	0.087	13.3	1.1	0.26	11.8	0.1	2.2	2	1	0	2	2	2	0	PhoU	domain
RimK	PF08443.11	gi|227827760|ref|YP_002829540.1|	-	5.3e-33	114.2	0.1	2e-32	112.3	0.0	1.7	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|227827760|ref|YP_002829540.1|	-	1.8e-09	37.9	0.0	3.2e-09	37.1	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|227827760|ref|YP_002829540.1|	-	3.1e-09	36.4	0.1	6e-09	35.5	0.0	1.5	2	0	0	2	2	2	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|227827760|ref|YP_002829540.1|	-	0.00022	20.6	0.0	0.044	13.0	0.0	2.2	2	0	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
ATP-grasp	PF02222.22	gi|227827760|ref|YP_002829540.1|	-	0.0019	17.8	0.0	0.015	14.9	0.0	2.0	2	0	0	2	2	2	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|227827760|ref|YP_002829540.1|	-	0.0091	15.6	0.0	0.29	10.6	0.0	2.2	2	0	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.17	gi|227827760|ref|YP_002829540.1|	-	0.02	14.4	0.0	0.032	13.7	0.0	1.5	1	1	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|227827760|ref|YP_002829540.1|	-	0.021	14.3	0.0	0.045	13.2	0.0	1.5	1	0	0	1	1	1	0	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|227827761|ref|YP_002829541.1|	-	6.2e-96	319.9	0.0	4.9e-65	219.0	0.0	2.5	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|227827761|ref|YP_002829541.1|	-	2.9e-33	114.8	1.1	8.3e-33	113.3	0.5	2.2	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp	PF02222.22	gi|227827761|ref|YP_002829541.1|	-	5.5e-18	65.1	0.0	5.1e-09	35.9	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|227827761|ref|YP_002829541.1|	-	2e-14	53.4	0.0	4.4e-07	29.7	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.13	gi|227827761|ref|YP_002829541.1|	-	4.6e-13	49.2	0.2	1.6e-06	27.8	0.1	2.6	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|227827761|ref|YP_002829541.1|	-	1e-08	35.4	1.3	6.3e-05	23.1	0.2	3.0	2	1	0	2	2	2	2	ATP-grasp	domain
GARS_A	PF01071.19	gi|227827761|ref|YP_002829541.1|	-	1.4e-07	31.4	0.1	4.1e-05	23.4	0.0	2.8	2	1	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RimK	PF08443.11	gi|227827761|ref|YP_002829541.1|	-	4.5e-06	26.4	0.1	0.0013	18.4	0.0	3.1	3	0	0	3	3	3	1	RimK-like	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|227827761|ref|YP_002829541.1|	-	6.6e-05	22.5	0.1	0.2	11.1	0.0	3.6	2	1	1	3	3	3	2	ATP-grasp	domain
MGS	PF02142.22	gi|227827761|ref|YP_002829541.1|	-	0.0018	18.4	0.1	4.3	7.6	0.1	3.7	3	0	0	3	3	3	1	MGS-like	domain
HTH_23	PF13384.6	gi|227827761|ref|YP_002829541.1|	-	0.0051	16.6	0.0	0.099	12.5	0.0	2.7	2	0	0	2	2	2	1	Homeodomain-like	domain
UBA_6	PF18039.1	gi|227827761|ref|YP_002829541.1|	-	0.01	15.8	0.0	0.11	12.4	0.0	2.6	2	0	0	2	2	2	1	UBA-like	domain
ATP-grasp_2	PF08442.10	gi|227827761|ref|YP_002829541.1|	-	0.011	15.3	0.0	2.8	7.5	0.0	3.0	3	0	0	3	3	3	0	ATP-grasp	domain
ATP-synt_F	PF01990.17	gi|227827761|ref|YP_002829541.1|	-	0.082	13.2	1.4	4.9	7.5	0.0	4.1	5	1	0	5	5	4	0	ATP	synthase	(F/14-kDa)	subunit
CPSase_sm_chain	PF00988.22	gi|227827762|ref|YP_002829542.1|	-	2.3e-47	160.0	0.1	3.4e-47	159.4	0.1	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.28	gi|227827762|ref|YP_002829542.1|	-	5.8e-45	153.4	0.0	8.2e-45	152.9	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|227827762|ref|YP_002829542.1|	-	1.3e-06	28.3	0.2	0.00017	21.4	0.1	2.2	1	1	1	2	2	2	2	Peptidase	C26
Lyase_1	PF00206.20	gi|227827763|ref|YP_002829543.1|	-	3.9e-47	161.2	0.1	5.9e-47	160.6	0.1	1.2	1	0	0	1	1	1	1	Lyase
Arginosuc_synth	PF00764.19	gi|227827764|ref|YP_002829544.1|	-	5.6e-145	483.5	0.3	6.4e-145	483.3	0.3	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|227827764|ref|YP_002829544.1|	-	2.6e-05	23.8	0.1	0.00036	20.1	0.1	2.1	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|227827764|ref|YP_002829544.1|	-	0.11	11.3	0.1	0.19	10.5	0.1	1.5	1	1	0	1	1	1	0	tRNA	methyl	transferase
RHH_1	PF01402.21	gi|227827765|ref|YP_002829545.1|	-	1.6e-07	31.0	0.0	1.8e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
PapB	PF03333.13	gi|227827766|ref|YP_002829546.1|	-	0.0093	16.0	0.1	0.053	13.5	0.0	2.0	2	0	0	2	2	2	1	Adhesin	biosynthesis	transcription	regulatory	protein
DUF4423	PF14394.6	gi|227827766|ref|YP_002829546.1|	-	0.035	13.8	0.1	0.06	13.0	0.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
OrsD	PF12013.8	gi|227827766|ref|YP_002829546.1|	-	0.075	13.5	0.1	0.13	12.8	0.1	1.3	1	0	0	1	1	1	0	Orsellinic	acid/F9775	biosynthesis	cluster	protein	D
DUF1677	PF07911.13	gi|227827766|ref|YP_002829546.1|	-	0.098	13.1	0.1	0.15	12.4	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1677)
DUF1967	PF09269.11	gi|227827766|ref|YP_002829546.1|	-	0.1	12.6	0.1	0.36	10.8	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1967)
AIRS_C	PF02769.22	gi|227827767|ref|YP_002829547.1|	-	1.4e-24	87.0	0.0	3.8e-24	85.6	0.0	1.7	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|227827767|ref|YP_002829547.1|	-	1.9e-17	63.7	3.0	1.1e-16	61.3	1.9	2.1	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
SLD5_C	PF16922.5	gi|227827767|ref|YP_002829547.1|	-	0.11	12.7	0.0	0.28	11.4	0.0	1.7	1	0	0	1	1	1	0	DNA	replication	complex	GINS	protein	SLD5	C-terminus
GARS_A	PF01071.19	gi|227827768|ref|YP_002829548.1|	-	1.4e-43	148.9	0.0	2.5e-43	148.1	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|227827768|ref|YP_002829548.1|	-	1.1e-21	77.4	0.0	2e-21	76.6	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|227827768|ref|YP_002829548.1|	-	2.1e-09	37.5	0.0	4.3e-09	36.5	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.6	gi|227827768|ref|YP_002829548.1|	-	0.00019	21.1	0.0	0.00055	19.6	0.0	1.7	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|227827768|ref|YP_002829548.1|	-	0.0012	18.4	0.0	0.0031	17.0	0.0	1.7	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.6	gi|227827768|ref|YP_002829548.1|	-	0.0033	16.7	0.0	0.0055	16.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
Pribosyltran	PF00156.27	gi|227827769|ref|YP_002829549.1|	-	6.2e-11	42.1	0.9	3e-10	39.9	0.3	2.3	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|227827769|ref|YP_002829549.1|	-	0.0087	15.6	0.1	0.017	14.7	0.1	1.5	1	1	0	1	1	1	1	Phosphoribosyl	transferase
GATase_7	PF13537.6	gi|227827769|ref|YP_002829549.1|	-	0.015	15.2	0.0	0.033	14.1	0.0	1.5	1	1	0	1	1	1	0	Glutamine	amidotransferase	domain
Ca_bind_SSO6904	PF18249.1	gi|227827769|ref|YP_002829549.1|	-	0.064	13.6	0.3	0.19	12.1	0.3	1.7	1	0	0	1	1	1	0	Calcium	binding	protein	SSO6904
NTR	PF01759.21	gi|227827769|ref|YP_002829549.1|	-	0.14	11.9	0.1	0.28	11.0	0.1	1.4	1	0	0	1	1	1	0	UNC-6/NTR/C345C	module
GATase_7	PF13537.6	gi|227827770|ref|YP_002829550.1|	-	1.5e-09	37.8	0.0	1.1e-08	35.0	0.0	2.2	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|227827770|ref|YP_002829550.1|	-	4.7e-09	36.5	0.0	1.6e-08	34.8	0.0	1.9	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|227827770|ref|YP_002829550.1|	-	1e-08	34.9	0.2	2.4e-08	33.6	0.2	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|227827770|ref|YP_002829550.1|	-	0.023	14.2	0.0	0.039	13.5	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase
AIRS_C	PF02769.22	gi|227827771|ref|YP_002829551.1|	-	1.8e-42	145.1	1.0	7.4e-29	100.9	0.7	2.3	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|227827771|ref|YP_002829551.1|	-	2.1e-40	137.3	1.4	3.2e-22	79.0	0.3	2.4	2	0	0	2	2	2	2	AIR	synthase	related	protein,	N-terminal	domain
FGAR-AT_linker	PF18072.1	gi|227827771|ref|YP_002829551.1|	-	6.5e-10	39.4	0.0	1.5e-09	38.2	0.0	1.7	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
GATase_5	PF13507.6	gi|227827772|ref|YP_002829552.1|	-	6.1e-43	146.8	0.0	7.7e-43	146.5	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|227827772|ref|YP_002829552.1|	-	8.8e-11	41.9	0.0	1.3e-10	41.4	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|227827772|ref|YP_002829552.1|	-	5.4e-07	29.4	0.0	7.8e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|227827772|ref|YP_002829552.1|	-	4.1e-06	26.7	0.0	5.7e-06	26.2	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
PurS	PF02700.14	gi|227827773|ref|YP_002829553.1|	-	1e-18	67.2	1.0	1.2e-18	67.1	1.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
SAICAR_synt	PF01259.18	gi|227827774|ref|YP_002829554.1|	-	4.6e-54	183.7	0.8	5.1e-54	183.5	0.8	1.0	1	0	0	1	1	1	1	SAICAR	synthetase
tRNA_bind	PF01588.20	gi|227827775|ref|YP_002829555.1|	-	2.4e-26	91.7	0.0	2.8e-26	91.5	0.0	1.1	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
NOG1_N	PF17835.1	gi|227827776|ref|YP_002829556.1|	-	4.4e-44	150.3	2.9	8.9e-44	149.3	2.9	1.5	1	0	0	1	1	1	1	NOG1	N-terminal	helical	domain
MMR_HSR1	PF01926.23	gi|227827776|ref|YP_002829556.1|	-	1.3e-19	70.4	0.1	2.8e-19	69.3	0.1	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
NOG1	PF06858.14	gi|227827776|ref|YP_002829556.1|	-	8.1e-16	57.5	0.4	1.6e-15	56.6	0.4	1.5	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
FeoB_N	PF02421.18	gi|227827776|ref|YP_002829556.1|	-	2.9e-14	52.9	0.0	4.8e-14	52.2	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|227827776|ref|YP_002829556.1|	-	3.7e-06	26.6	0.2	0.0032	17.1	0.2	3.0	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|227827776|ref|YP_002829556.1|	-	3.5e-05	23.8	4.0	0.11	12.3	0.2	3.2	1	1	1	2	2	2	2	RsgA	GTPase
MMR_HSR1_Xtn	PF16897.5	gi|227827776|ref|YP_002829556.1|	-	3.5e-05	23.8	0.4	3.5e-05	23.8	0.4	2.2	2	1	2	4	4	4	1	C-terminal	region	of	MMR_HSR1	domain
PduV-EutP	PF10662.9	gi|227827776|ref|YP_002829556.1|	-	3.6e-05	23.5	0.6	0.00076	19.2	0.2	2.9	2	1	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.10	gi|227827776|ref|YP_002829556.1|	-	6.2e-05	22.5	0.2	6.2e-05	22.5	0.2	1.9	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
AIG1	PF04548.16	gi|227827776|ref|YP_002829556.1|	-	6.7e-05	22.3	0.3	0.00012	21.4	0.1	1.5	2	0	0	2	2	2	1	AIG1	family
Ras	PF00071.22	gi|227827776|ref|YP_002829556.1|	-	0.00028	20.5	0.1	0.00085	18.9	0.0	1.8	2	0	0	2	2	2	1	Ras	family
AAA_18	PF13238.6	gi|227827776|ref|YP_002829556.1|	-	0.00042	20.9	0.1	0.006	17.1	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
Dynamin_N	PF00350.23	gi|227827776|ref|YP_002829556.1|	-	0.0039	17.3	3.7	0.04	14.0	0.2	2.7	2	1	1	3	3	3	1	Dynamin	family
AAA_16	PF13191.6	gi|227827776|ref|YP_002829556.1|	-	0.0087	16.5	0.1	0.23	11.8	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
Roc	PF08477.13	gi|227827776|ref|YP_002829556.1|	-	0.011	16.0	0.0	0.16	12.2	0.0	2.7	2	1	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NTPase_1	PF03266.15	gi|227827776|ref|YP_002829556.1|	-	0.025	14.5	1.4	0.051	13.5	0.1	2.2	3	0	0	3	3	3	0	NTPase
DnaB_C	PF03796.15	gi|227827776|ref|YP_002829556.1|	-	0.025	13.9	0.6	0.076	12.3	0.1	1.9	1	1	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
Fer4_14	PF13394.6	gi|227827777|ref|YP_002829557.1|	-	5.1e-15	55.6	0.1	1.3e-14	54.4	0.1	1.6	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.21	gi|227827777|ref|YP_002829557.1|	-	6.3e-13	49.4	0.1	1.6e-12	48.1	0.1	1.5	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227827777|ref|YP_002829557.1|	-	4.6e-10	39.9	0.0	8.2e-10	39.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TYW3	PF02676.14	gi|227827778|ref|YP_002829558.1|	-	2.4e-32	112.1	0.1	3.9e-32	111.3	0.1	1.3	1	1	0	1	1	1	1	Methyltransferase	TYW3
DUF1199	PF06712.11	gi|227827778|ref|YP_002829558.1|	-	0.11	12.5	0.0	0.33	11.0	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1199)
PSP1	PF04468.12	gi|227827778|ref|YP_002829558.1|	-	0.13	12.6	0.0	0.29	11.4	0.0	1.7	1	0	0	1	1	1	0	PSP1	C-terminal	conserved	region
HTH_5	PF01022.20	gi|227827780|ref|YP_002829560.1|	-	2.2e-10	40.2	0.1	3.2e-10	39.7	0.1	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|227827780|ref|YP_002829560.1|	-	0.00013	22.0	0.0	0.00025	21.0	0.0	1.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|227827780|ref|YP_002829560.1|	-	0.0013	18.6	0.0	0.002	18.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|227827780|ref|YP_002829560.1|	-	0.0031	17.5	0.4	0.0046	16.9	0.4	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|227827780|ref|YP_002829560.1|	-	0.0093	15.5	0.1	0.02	14.4	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_40	PF14493.6	gi|227827780|ref|YP_002829560.1|	-	0.018	15.5	0.0	0.026	15.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|227827780|ref|YP_002829560.1|	-	0.078	13.0	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
IL2	PF00715.17	gi|227827781|ref|YP_002829561.1|	-	0.15	12.0	2.4	0.31	11.0	0.7	2.3	1	1	0	2	2	2	0	Interleukin	2
PhoU	PF01895.19	gi|227827782|ref|YP_002829562.1|	-	3.6e-23	81.8	8.6	2.8e-18	66.1	1.0	2.4	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|227827782|ref|YP_002829562.1|	-	3.8e-12	45.8	0.0	7.6e-12	44.9	0.0	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
OMPdecase	PF00215.24	gi|227827783|ref|YP_002829563.1|	-	2.2e-22	79.7	0.0	2.7e-22	79.5	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Pribosyltran	PF00156.27	gi|227827784|ref|YP_002829564.1|	-	3.5e-17	62.4	0.1	4.6e-17	62.0	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|227827784|ref|YP_002829564.1|	-	0.072	12.5	0.0	0.081	12.4	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
OTCace_N	PF02729.21	gi|227827785|ref|YP_002829565.1|	-	1.7e-40	138.4	0.0	4.3e-40	137.1	0.0	1.7	2	1	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|227827785|ref|YP_002829565.1|	-	1.2e-23	84.0	0.0	8.8e-23	81.1	0.0	2.1	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
PyrI	PF01948.18	gi|227827786|ref|YP_002829566.1|	-	2e-32	111.3	2.3	3e-32	110.7	2.3	1.3	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|227827786|ref|YP_002829566.1|	-	1.4e-16	60.1	3.5	2.4e-16	59.4	3.5	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-U1	PF06220.12	gi|227827786|ref|YP_002829566.1|	-	0.083	12.7	0.2	0.14	11.9	0.2	1.4	1	0	0	1	1	1	0	U1	zinc	finger
DHODB_Fe-S_bind	PF10418.9	gi|227827787|ref|YP_002829567.1|	-	0.00025	20.8	4.2	0.00055	19.7	4.2	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
Amidohydro_1	PF01979.20	gi|227827788|ref|YP_002829568.1|	-	6.6e-15	55.3	0.0	1.1e-12	47.9	0.0	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|227827788|ref|YP_002829568.1|	-	0.0011	18.5	0.0	1.4	8.3	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
DHO_dh	PF01180.21	gi|227827789|ref|YP_002829569.1|	-	1e-44	153.0	2.2	1.4e-44	152.5	2.2	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Dus	PF01207.17	gi|227827789|ref|YP_002829569.1|	-	8.8e-05	21.7	0.1	0.00061	19.0	0.1	1.9	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|227827789|ref|YP_002829569.1|	-	0.0088	15.5	0.3	0.018	14.5	0.3	1.4	1	0	0	1	1	1	1	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|227827789|ref|YP_002829569.1|	-	0.01	14.8	0.6	0.021	13.8	0.1	1.7	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
His_biosynth	PF00977.21	gi|227827789|ref|YP_002829569.1|	-	0.023	14.1	0.4	0.71	9.3	0.0	2.4	3	0	0	3	3	3	0	Histidine	biosynthesis	protein
NeuB	PF03102.14	gi|227827789|ref|YP_002829569.1|	-	0.097	12.1	0.2	0.3	10.5	0.2	1.7	2	0	0	2	2	2	0	NeuB	family
FMN_dh	PF01070.18	gi|227827789|ref|YP_002829569.1|	-	0.16	11.0	2.5	0.28	10.2	0.8	1.9	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
RRM_8	PF11835.8	gi|227827789|ref|YP_002829569.1|	-	0.17	12.1	0.1	0.29	11.4	0.1	1.3	1	0	0	1	1	1	0	RRM-like	domain
RPN7	PF10602.9	gi|227827791|ref|YP_002829571.1|	-	0.00046	19.9	2.1	0.00053	19.7	2.1	1.0	1	0	0	1	1	1	1	26S	proteasome	subunit	RPN7
DUF677	PF05055.12	gi|227827791|ref|YP_002829571.1|	-	0.004	16.1	0.8	0.0053	15.7	0.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF677)
DUF1664	PF07889.12	gi|227827791|ref|YP_002829571.1|	-	0.054	13.5	1.7	0.096	12.7	1.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
ZapB	PF06005.12	gi|227827791|ref|YP_002829571.1|	-	0.12	12.9	6.4	0.74	10.3	0.8	2.3	2	1	0	2	2	2	0	Cell	division	protein	ZapB
CLZ	PF16526.5	gi|227827791|ref|YP_002829571.1|	-	0.17	12.3	0.5	0.17	12.3	0.5	2.3	2	1	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Phage_GP20	PF06810.11	gi|227827791|ref|YP_002829571.1|	-	0.22	11.3	6.2	2.2	8.1	6.2	2.2	1	1	0	1	1	1	0	Phage	minor	structural	protein	GP20
DASH_Dad1	PF08649.10	gi|227827791|ref|YP_002829571.1|	-	0.3	11.3	0.3	0.3	11.3	0.3	2.3	2	1	1	3	3	3	0	DASH	complex	subunit	Dad1
COG5	PF10392.9	gi|227827791|ref|YP_002829571.1|	-	0.52	10.5	5.7	1	9.6	5.7	1.6	1	1	0	1	1	1	0	Golgi	transport	complex	subunit	5
DivIC	PF04977.15	gi|227827791|ref|YP_002829571.1|	-	0.7	9.7	7.8	1.4	8.7	0.2	2.6	2	1	1	3	3	3	0	Septum	formation	initiator
FlaC_arch	PF05377.11	gi|227827791|ref|YP_002829571.1|	-	1.5	9.3	9.5	1.4	9.3	0.9	2.6	2	1	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
DUF724	PF05266.14	gi|227827791|ref|YP_002829571.1|	-	3.4	7.4	8.7	1.2	8.9	5.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
MarC	PF01914.17	gi|227827792|ref|YP_002829572.1|	-	2.3e-34	118.6	18.8	2.7e-34	118.4	18.8	1.0	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
DUF3693	PF12472.8	gi|227827792|ref|YP_002829572.1|	-	0.037	13.7	0.1	0.44	10.3	0.0	2.3	2	0	0	2	2	2	0	Phage	related	protein
Proton_antipo_N	PF00662.20	gi|227827792|ref|YP_002829572.1|	-	0.05	13.7	0.4	0.89	9.7	0.0	2.8	3	0	0	3	3	3	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF4239	PF14023.6	gi|227827792|ref|YP_002829572.1|	-	0.96	9.1	5.1	0.11	12.2	0.8	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4239)
AsnC_trans_reg	PF01037.21	gi|227827793|ref|YP_002829573.1|	-	4.3e-18	65.1	0.3	8.4e-18	64.1	0.3	1.5	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|227827793|ref|YP_002829573.1|	-	5.1e-13	48.3	3.2	1.7e-12	46.7	0.3	2.6	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|227827793|ref|YP_002829573.1|	-	7.9e-12	44.8	3.9	1.4e-11	44.0	3.4	1.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|227827793|ref|YP_002829573.1|	-	1.8e-05	24.5	0.2	3.1e-05	23.8	0.2	1.3	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|227827793|ref|YP_002829573.1|	-	0.0021	18.3	0.0	0.0059	16.9	0.0	1.8	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_50	PF18024.1	gi|227827793|ref|YP_002829573.1|	-	0.0022	17.6	0.2	0.011	15.4	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|227827793|ref|YP_002829573.1|	-	0.0026	17.6	0.7	0.0044	16.9	0.2	1.6	2	0	0	2	2	1	1	MarR	family
HTH_11	PF08279.12	gi|227827793|ref|YP_002829573.1|	-	0.0027	17.6	0.1	0.0057	16.6	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_10	PF04967.12	gi|227827793|ref|YP_002829573.1|	-	0.0076	16.0	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|227827793|ref|YP_002829573.1|	-	0.013	15.6	0.1	0.037	14.2	0.1	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|227827793|ref|YP_002829573.1|	-	0.02	14.7	0.3	0.033	14.0	0.3	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|227827793|ref|YP_002829573.1|	-	0.025	14.4	0.1	0.041	13.7	0.1	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|227827793|ref|YP_002829573.1|	-	0.026	14.5	0.3	0.05	13.6	0.3	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|227827793|ref|YP_002829573.1|	-	0.027	14.2	0.6	0.052	13.3	0.6	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
ANAPC2	PF08672.11	gi|227827793|ref|YP_002829573.1|	-	0.035	14.6	0.1	9.9	6.8	0.0	2.3	2	0	0	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
HTH_20	PF12840.7	gi|227827793|ref|YP_002829573.1|	-	0.038	14.1	0.5	0.061	13.4	0.5	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_30	PF13556.6	gi|227827793|ref|YP_002829573.1|	-	0.05	13.4	0.6	0.1	12.4	0.3	1.7	1	1	1	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
GntR	PF00392.21	gi|227827793|ref|YP_002829573.1|	-	0.065	12.9	0.2	0.1	12.3	0.2	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
SpoIIID	PF12116.8	gi|227827793|ref|YP_002829573.1|	-	0.11	12.6	0.0	0.27	11.4	0.0	1.7	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
TetR_N	PF00440.23	gi|227827793|ref|YP_002829573.1|	-	0.13	12.1	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_7	PF02796.15	gi|227827793|ref|YP_002829573.1|	-	0.13	12.4	0.1	5.2	7.2	0.0	2.3	1	1	1	2	2	2	0	Helix-turn-helix	domain	of	resolvase
RNA_POL_M_15KD	PF02150.16	gi|227827794|ref|YP_002829574.1|	-	1.9e-09	37.2	2.8	2.1e-09	37.1	1.5	1.8	2	0	0	2	2	1	1	RNA	polymerases	M/15	Kd	subunit
zf-NADH-PPase	PF09297.11	gi|227827794|ref|YP_002829574.1|	-	0.0002	20.9	0.4	0.06	13.0	0.1	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
IBR	PF01485.21	gi|227827794|ref|YP_002829574.1|	-	0.00023	21.3	0.5	0.00034	20.8	0.5	1.4	1	0	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
zf-TFIIB	PF13453.6	gi|227827794|ref|YP_002829574.1|	-	0.00073	18.8	1.3	0.0012	18.1	1.3	1.4	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
Zn_ribbon_recom	PF13408.6	gi|227827794|ref|YP_002829574.1|	-	0.0015	19.0	3.1	0.43	11.1	0.2	2.3	1	1	1	2	2	2	2	Recombinase	zinc	beta	ribbon	domain
zf-ribbon_3	PF13248.6	gi|227827794|ref|YP_002829574.1|	-	0.0046	16.3	2.2	0.26	10.7	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.7	gi|227827794|ref|YP_002829574.1|	-	0.0066	16.4	0.2	0.011	15.7	0.2	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|227827794|ref|YP_002829574.1|	-	0.007	16.0	6.5	0.75	9.6	1.7	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
C1_1	PF00130.22	gi|227827794|ref|YP_002829574.1|	-	0.0085	16.0	0.5	0.013	15.4	0.5	1.2	1	0	0	1	1	1	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn_Tnp_IS1595	PF12760.7	gi|227827794|ref|YP_002829574.1|	-	0.0097	15.9	0.3	0.017	15.1	0.3	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|227827794|ref|YP_002829574.1|	-	0.011	15.7	2.7	0.16	11.9	3.2	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
zf-C4_Topoisom	PF01396.19	gi|227827794|ref|YP_002829574.1|	-	0.013	15.3	5.0	0.33	10.8	0.6	2.3	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF2387	PF09526.10	gi|227827794|ref|YP_002829574.1|	-	0.015	15.4	1.3	0.03	14.5	1.1	1.5	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Lar_restr_allev	PF14354.6	gi|227827794|ref|YP_002829574.1|	-	0.017	15.5	0.5	0.037	14.4	0.5	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-C3HC	PF07967.13	gi|227827794|ref|YP_002829574.1|	-	0.019	15.0	0.5	0.021	14.8	0.5	1.3	1	0	0	1	1	1	0	C3HC	zinc	finger-like
zf-piccolo	PF05715.13	gi|227827794|ref|YP_002829574.1|	-	0.022	14.9	0.4	1.4	9.1	0.0	2.2	1	1	1	2	2	2	0	Piccolo	Zn-finger
zinc_ribbon_15	PF17032.5	gi|227827794|ref|YP_002829574.1|	-	0.027	15.2	2.7	0.57	11.0	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	family
UPF0547	PF10571.9	gi|227827794|ref|YP_002829574.1|	-	0.14	12.2	4.5	6.9	6.8	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.11	gi|227827794|ref|YP_002829574.1|	-	0.16	11.9	2.4	0.2	11.6	0.6	1.9	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
GFA	PF04828.14	gi|227827794|ref|YP_002829574.1|	-	0.21	11.9	1.2	13	6.2	0.1	2.3	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Ribosomal_L33	PF00471.20	gi|227827794|ref|YP_002829574.1|	-	0.31	11.5	5.9	3.1	8.3	0.2	2.5	2	0	0	2	2	2	0	Ribosomal	protein	L33
zf-IS66	PF13005.7	gi|227827794|ref|YP_002829574.1|	-	0.45	11.0	0.2	0.45	11.0	0.2	2.9	2	2	2	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
Zn-ribbon_8	PF09723.10	gi|227827794|ref|YP_002829574.1|	-	0.57	10.4	3.6	9.3	6.5	0.2	2.3	1	1	0	2	2	2	0	Zinc	ribbon	domain
zf-tcix	PF14952.6	gi|227827794|ref|YP_002829574.1|	-	0.78	9.4	4.6	10	5.9	0.2	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
A2L_zn_ribbon	PF08792.10	gi|227827794|ref|YP_002829574.1|	-	1.3	8.8	5.7	3.3	7.5	0.5	2.3	1	1	0	2	2	2	0	A2L	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|227827794|ref|YP_002829574.1|	-	8.6	6.1	7.8	13	5.5	0.2	2.7	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
Radical_SAM	PF04055.21	gi|227827796|ref|YP_002829576.1|	-	2.6e-17	63.7	0.1	5.8e-17	62.6	0.1	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|227827796|ref|YP_002829576.1|	-	0.094	12.8	0.0	0.32	11.1	0.0	1.8	2	0	0	2	2	2	0	B12	binding	domain
tRNA-synt_2b	PF00587.25	gi|227827797|ref|YP_002829577.1|	-	5.3e-38	130.8	0.0	8.8e-38	130.1	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.22	gi|227827797|ref|YP_002829577.1|	-	9.1e-22	77.3	12.2	3e-21	75.7	11.0	2.3	3	0	0	3	3	3	1	Seryl-tRNA	synthetase	N-terminal	domain
FYRC	PF05965.14	gi|227827797|ref|YP_002829577.1|	-	0.04	14.1	0.2	0.15	12.3	0.1	2.0	2	0	0	2	2	2	0	F/Y	rich	C-terminus
Spectrin	PF00435.21	gi|227827797|ref|YP_002829577.1|	-	0.67	10.5	7.5	0.65	10.5	3.0	2.4	1	1	1	2	2	2	0	Spectrin	repeat
YkyA	PF10368.9	gi|227827797|ref|YP_002829577.1|	-	0.74	9.5	7.1	0.7	9.5	5.5	1.7	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
Cep57_MT_bd	PF06657.13	gi|227827797|ref|YP_002829577.1|	-	1.4	9.5	7.9	2.3	8.7	6.8	2.0	1	1	1	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
APG6_N	PF17675.1	gi|227827797|ref|YP_002829577.1|	-	2	9.0	12.9	8	7.0	10.4	2.6	2	1	0	2	2	2	0	Apg6	coiled-coil	region
FeS_assembly_P	PF01883.19	gi|227827798|ref|YP_002829578.1|	-	5.2e-21	74.6	0.3	7.6e-21	74.1	0.3	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
YqhG	PF11079.8	gi|227827798|ref|YP_002829578.1|	-	0.015	14.3	0.0	0.041	12.8	0.0	1.6	2	0	0	2	2	2	0	Bacterial	protein	YqhG	of	unknown	function
NifU	PF01106.17	gi|227827798|ref|YP_002829578.1|	-	0.04	14.1	0.0	0.064	13.4	0.0	1.4	1	1	0	1	1	1	0	NifU-like	domain
PRA-CH	PF01502.18	gi|227827799|ref|YP_002829579.1|	-	2.4e-30	104.2	0.1	3.3e-30	103.7	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
W_rich_C	PF07483.11	gi|227827799|ref|YP_002829579.1|	-	0.038	14.2	0.1	0.048	13.8	0.1	1.2	1	0	0	1	1	1	0	Tryptophan-rich	Synechocystis	species	C-terminal	domain
GATase	PF00117.28	gi|227827800|ref|YP_002829580.1|	-	2.4e-23	82.9	0.0	3e-23	82.6	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|227827800|ref|YP_002829580.1|	-	0.0009	18.9	0.0	0.0021	17.7	0.0	1.5	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|227827800|ref|YP_002829580.1|	-	0.0084	16.0	0.0	0.42	10.4	0.0	2.0	2	0	0	2	2	2	1	SNO	glutamine	amidotransferase	family
GATase_5	PF13507.6	gi|227827800|ref|YP_002829580.1|	-	0.047	12.8	0.1	0.086	11.9	0.1	1.5	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
PRA-PH	PF01503.17	gi|227827801|ref|YP_002829581.1|	-	7e-20	71.3	0.1	7.8e-20	71.1	0.1	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
Histidinol_dh	PF00815.20	gi|227827802|ref|YP_002829582.1|	-	1.2e-132	442.8	3.4	5e-132	440.8	3.4	1.7	1	1	0	1	1	1	1	Histidinol	dehydrogenase
RloB	PF13707.6	gi|227827802|ref|YP_002829582.1|	-	0.042	14.1	2.9	0.047	13.9	0.3	2.0	2	0	0	2	2	2	0	RloB-like	protein
Phage_TAC_8	PF10666.9	gi|227827802|ref|YP_002829582.1|	-	0.38	11.0	6.1	0.96	9.7	0.6	2.3	2	0	0	2	2	2	0	Phage	tail	assembly	chaperone	protein	Gp14	()A118
His_biosynth	PF00977.21	gi|227827803|ref|YP_002829583.1|	-	3e-81	272.3	4.3	3.4e-81	272.1	4.3	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|227827803|ref|YP_002829583.1|	-	1.1e-08	34.9	1.7	0.0012	18.4	0.1	2.1	1	1	1	2	2	2	2	Nitronate	monooxygenase
ThiG	PF05690.14	gi|227827803|ref|YP_002829583.1|	-	9e-07	28.4	0.6	0.0012	18.3	0.2	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|227827803|ref|YP_002829583.1|	-	1.2e-05	24.6	0.0	0.014	14.5	0.0	2.2	1	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
TMP-TENI	PF02581.17	gi|227827803|ref|YP_002829583.1|	-	2.2e-05	23.9	0.2	0.053	12.8	0.0	2.2	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase
G3P_antiterm	PF04309.12	gi|227827803|ref|YP_002829583.1|	-	8.6e-05	22.0	0.1	0.0053	16.2	0.1	2.3	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
Glu_synthase	PF01645.17	gi|227827803|ref|YP_002829583.1|	-	0.0041	16.3	0.1	0.0065	15.6	0.1	1.2	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.21	gi|227827803|ref|YP_002829583.1|	-	0.0075	15.5	0.6	0.14	11.3	0.1	2.3	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
FMN_dh	PF01070.18	gi|227827803|ref|YP_002829583.1|	-	0.034	13.2	0.5	0.1	11.6	0.2	1.8	1	1	1	2	2	2	0	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|227827803|ref|YP_002829583.1|	-	0.04	12.9	1.5	0.13	11.3	0.1	2.0	1	1	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
Trp_syntA	PF00290.20	gi|227827803|ref|YP_002829583.1|	-	0.072	11.9	0.6	0.14	10.9	0.5	1.5	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
IGPD	PF00475.18	gi|227827804|ref|YP_002829584.1|	-	3e-52	176.8	0.1	4.3e-52	176.2	0.1	1.2	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
His_biosynth	PF00977.21	gi|227827805|ref|YP_002829585.1|	-	4.2e-52	176.9	2.6	4.8e-52	176.7	2.6	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PcrB	PF01884.17	gi|227827805|ref|YP_002829585.1|	-	2.8e-05	23.7	3.1	0.0036	16.8	0.1	2.1	2	0	0	2	2	2	2	PcrB	family
HisG	PF01634.18	gi|227827806|ref|YP_002829586.1|	-	3e-46	157.3	0.7	3.8e-46	157.0	0.7	1.1	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|227827806|ref|YP_002829586.1|	-	2.9e-18	65.8	1.5	6.2e-18	64.7	0.3	2.1	2	0	0	2	2	2	1	HisG,	C-terminal	domain
Aminotran_1_2	PF00155.21	gi|227827807|ref|YP_002829587.1|	-	1.7e-43	149.2	0.0	1.9e-43	149.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
IGR	PF09597.10	gi|227827808|ref|YP_002829588.1|	-	0.0031	17.6	0.1	0.57	10.3	0.0	2.4	2	0	0	2	2	2	2	IGR	protein	motif
tRNA-synt_1	PF00133.22	gi|227827809|ref|YP_002829589.1|	-	3.3e-65	220.5	0.0	8.7e-65	219.1	0.0	1.7	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|227827809|ref|YP_002829589.1|	-	1.1e-25	90.3	0.1	9.5e-14	50.9	0.0	2.7	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|227827809|ref|YP_002829589.1|	-	2.4e-23	82.8	4.1	3.9e-23	82.1	2.9	2.1	1	1	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|227827809|ref|YP_002829589.1|	-	4.3e-15	55.9	0.0	2.2e-08	33.8	0.0	2.8	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|227827809|ref|YP_002829589.1|	-	1.2e-12	47.7	0.1	3.7e-12	46.1	0.1	1.8	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
YxiJ	PF14176.6	gi|227827809|ref|YP_002829589.1|	-	0.0066	16.9	0.2	0.11	13.0	0.1	3.0	2	0	0	2	2	2	1	YxiJ-like	protein
Lge1	PF11488.8	gi|227827809|ref|YP_002829589.1|	-	0.16	12.2	1.2	0.55	10.5	1.2	1.9	1	0	0	1	1	1	0	Transcriptional	regulatory	protein	LGE1
Cob_adeno_trans	PF01923.18	gi|227827810|ref|YP_002829590.1|	-	7.5e-46	156.3	0.0	8.9e-46	156.0	0.0	1.1	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
DUF5357	PF17310.2	gi|227827810|ref|YP_002829590.1|	-	0.1	11.1	0.0	0.13	10.8	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5357)
ATP_bind_3	PF01171.20	gi|227827811|ref|YP_002829591.1|	-	6e-13	48.9	0.0	1e-12	48.2	0.0	1.4	1	0	0	1	1	1	1	PP-loop	family
NAD_synthase	PF02540.17	gi|227827811|ref|YP_002829591.1|	-	0.011	14.9	0.0	0.015	14.4	0.0	1.2	1	0	0	1	1	1	0	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|227827811|ref|YP_002829591.1|	-	0.086	11.6	0.0	0.13	11.1	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
zf-C2HC5	PF06221.13	gi|227827811|ref|YP_002829591.1|	-	0.21	11.6	4.3	3.9	7.6	2.2	3.1	2	1	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
DZR	PF12773.7	gi|227827811|ref|YP_002829591.1|	-	0.26	11.4	10.2	0.15	12.1	0.6	2.8	3	0	0	3	3	3	0	Double	zinc	ribbon
Rpr2	PF04032.16	gi|227827811|ref|YP_002829591.1|	-	1.2	9.4	6.5	23	5.4	0.6	3.6	3	1	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zinc_ribbon_15	PF17032.5	gi|227827811|ref|YP_002829591.1|	-	2.4	9.0	6.0	9	7.1	0.2	2.8	3	0	0	3	3	3	0	zinc-ribbon	family
zf-dskA_traR	PF01258.17	gi|227827811|ref|YP_002829591.1|	-	8.9	6.4	8.9	35	4.5	0.1	3.4	2	1	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF211	PF02680.14	gi|227827812|ref|YP_002829592.1|	-	4.4e-35	119.7	3.4	4.9e-35	119.6	3.4	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
AdoMet_dc	PF02675.15	gi|227827813|ref|YP_002829593.1|	-	4.2e-36	123.4	0.0	4.7e-36	123.3	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
UbiA	PF01040.18	gi|227827816|ref|YP_002829596.1|	-	2.6e-37	128.5	19.5	3.5e-37	128.0	19.5	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
MMR_HSR1	PF01926.23	gi|227827818|ref|YP_002829598.1|	-	5.8e-15	55.4	0.1	1.9e-11	44.0	0.0	2.2	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|227827818|ref|YP_002829598.1|	-	6.3e-09	36.0	0.0	1.2e-08	35.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
FeoB_N	PF02421.18	gi|227827818|ref|YP_002829598.1|	-	2.6e-05	23.8	0.1	0.015	14.8	0.0	2.5	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|227827818|ref|YP_002829598.1|	-	0.00015	21.9	1.2	0.012	15.6	0.1	2.6	2	1	1	3	3	3	1	Dynamin	family
AAA_16	PF13191.6	gi|227827818|ref|YP_002829598.1|	-	0.0015	19.0	0.0	0.0024	18.3	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AIG1	PF04548.16	gi|227827818|ref|YP_002829598.1|	-	0.0077	15.6	0.0	0.45	9.8	0.0	2.1	2	0	0	2	2	2	1	AIG1	family
Roc	PF08477.13	gi|227827818|ref|YP_002829598.1|	-	0.011	15.9	0.0	0.049	13.8	0.0	1.9	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
GTP_EFTU	PF00009.27	gi|227827818|ref|YP_002829598.1|	-	0.02	14.4	0.0	0.081	12.5	0.0	1.7	1	1	1	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_23	PF13476.6	gi|227827818|ref|YP_002829598.1|	-	0.063	13.8	0.1	0.14	12.7	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|227827818|ref|YP_002829598.1|	-	0.099	12.1	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
6PF2K	PF01591.18	gi|227827818|ref|YP_002829598.1|	-	0.13	11.5	0.3	5.6	6.2	0.0	2.8	3	0	0	3	3	3	0	6-phosphofructo-2-kinase
Acid_PPase	PF12689.7	gi|227827819|ref|YP_002829599.1|	-	4.7e-11	42.8	0.1	1.3e-10	41.4	0.1	1.7	1	1	0	1	1	1	1	Acid	Phosphatase
HAD_2	PF13419.6	gi|227827819|ref|YP_002829599.1|	-	5.9e-10	39.5	0.1	1.2e-08	35.3	0.0	2.4	1	1	1	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|227827819|ref|YP_002829599.1|	-	2.1e-06	28.2	0.0	0.0019	18.5	0.0	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
NIF	PF03031.18	gi|227827819|ref|YP_002829599.1|	-	0.013	15.3	0.0	0.017	14.9	0.0	1.3	1	0	0	1	1	1	0	NLI	interacting	factor-like	phosphatase
HAD	PF12710.7	gi|227827819|ref|YP_002829599.1|	-	0.085	13.3	0.1	14	6.0	0.0	2.1	1	1	1	2	2	2	0	haloacid	dehalogenase-like	hydrolase
TPP_enzyme_N	PF02776.18	gi|227827820|ref|YP_002829600.1|	-	3.4e-57	192.8	0.0	5.6e-55	185.6	0.0	2.4	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|227827820|ref|YP_002829600.1|	-	1.9e-46	157.6	0.0	1.1e-45	155.2	0.0	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|227827820|ref|YP_002829600.1|	-	1.2e-38	132.0	0.0	2.4e-38	131.0	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.19	gi|227827820|ref|YP_002829600.1|	-	0.0026	17.5	0.0	0.0054	16.5	0.0	1.5	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
ACT_5	PF13710.6	gi|227827821|ref|YP_002829601.1|	-	0.0083	15.9	0.0	0.013	15.3	0.0	1.3	1	0	0	1	1	1	1	ACT	domain
HicB-like_2	PF15970.5	gi|227827821|ref|YP_002829601.1|	-	0.03	14.5	0.1	0.046	13.9	0.1	1.3	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
IlvN	PF07991.12	gi|227827822|ref|YP_002829602.1|	-	2.7e-71	238.5	0.1	4.2e-71	237.8	0.1	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|227827822|ref|YP_002829602.1|	-	1.5e-52	177.7	2.8	2.1e-52	177.2	2.8	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.17	gi|227827822|ref|YP_002829602.1|	-	2.5e-08	34.4	0.0	6.4e-08	33.1	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|227827822|ref|YP_002829602.1|	-	2e-06	28.1	0.0	9.9e-06	25.8	0.0	2.0	2	1	1	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|227827822|ref|YP_002829602.1|	-	2.9e-05	23.5	0.0	6e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|227827822|ref|YP_002829602.1|	-	0.00049	20.2	0.2	0.012	15.6	0.0	2.2	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|227827822|ref|YP_002829602.1|	-	0.00065	19.7	0.6	1.7	8.6	0.1	2.9	3	0	0	3	3	3	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|227827822|ref|YP_002829602.1|	-	0.043	13.5	0.1	0.097	12.3	0.1	1.7	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Oxidored_nitro	PF00148.19	gi|227827822|ref|YP_002829602.1|	-	0.08	11.7	0.1	0.17	10.6	0.0	1.6	2	1	0	2	2	2	0	Nitrogenase	component	1	type	Oxidoreductase
Hjc	PF01870.18	gi|227827823|ref|YP_002829603.1|	-	5.8e-29	99.9	0.1	9.8e-29	99.2	0.1	1.4	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
AHJR-like	PF18743.1	gi|227827823|ref|YP_002829603.1|	-	0.0039	16.7	0.0	0.0078	15.8	0.0	1.5	1	1	0	1	1	1	1	REase_AHJR-like
TruB_C_2	PF16198.5	gi|227827823|ref|YP_002829603.1|	-	0.13	12.4	0.0	0.19	11.9	0.0	1.2	1	0	0	1	1	1	0	tRNA	pseudouridylate	synthase	B	C-terminal	domain
PDDEXK_5	PF11645.8	gi|227827823|ref|YP_002829603.1|	-	0.15	12.0	0.0	0.21	11.6	0.0	1.2	1	0	0	1	1	1	0	PD-(D/E)XK	endonuclease
T2SSE	PF00437.20	gi|227827824|ref|YP_002829604.1|	-	7.9e-09	35.0	0.0	1.3e-08	34.3	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
IstB_IS21	PF01695.17	gi|227827824|ref|YP_002829604.1|	-	0.0012	18.7	0.0	0.0025	17.6	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|227827824|ref|YP_002829604.1|	-	0.0012	19.4	2.7	0.0021	18.6	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
DnaB_C	PF03796.15	gi|227827824|ref|YP_002829604.1|	-	0.0018	17.7	0.0	0.0047	16.3	0.0	1.7	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
RuvB_N	PF05496.12	gi|227827824|ref|YP_002829604.1|	-	0.003	17.3	0.2	0.035	13.9	0.0	2.6	3	0	0	3	3	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NTPase_1	PF03266.15	gi|227827824|ref|YP_002829604.1|	-	0.0048	16.8	0.5	0.12	12.2	0.0	2.8	3	0	0	3	3	3	1	NTPase
AAA_16	PF13191.6	gi|227827824|ref|YP_002829604.1|	-	0.0066	16.8	0.0	0.013	15.9	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.6	gi|227827824|ref|YP_002829604.1|	-	0.008	16.4	0.0	0.014	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|227827824|ref|YP_002829604.1|	-	0.012	16.1	0.0	0.035	14.5	0.0	1.9	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|227827824|ref|YP_002829604.1|	-	0.013	15.7	0.1	0.29	11.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|227827824|ref|YP_002829604.1|	-	0.014	15.0	0.0	0.023	14.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|227827824|ref|YP_002829604.1|	-	0.015	15.2	0.0	0.025	14.5	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|227827824|ref|YP_002829604.1|	-	0.021	15.0	0.0	0.074	13.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|227827824|ref|YP_002829604.1|	-	0.023	14.4	0.1	0.32	10.7	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|227827824|ref|YP_002829604.1|	-	0.027	14.5	0.0	0.18	11.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|227827824|ref|YP_002829604.1|	-	0.031	14.3	0.0	0.059	13.4	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SRP54	PF00448.22	gi|227827824|ref|YP_002829604.1|	-	0.039	13.6	0.5	0.15	11.7	0.1	2.0	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_5	PF07728.14	gi|227827824|ref|YP_002829604.1|	-	0.046	13.7	0.0	0.15	12.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ResIII	PF04851.15	gi|227827824|ref|YP_002829604.1|	-	0.047	13.7	0.0	0.13	12.3	0.0	1.7	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Zeta_toxin	PF06414.12	gi|227827824|ref|YP_002829604.1|	-	0.058	12.7	0.0	0.13	11.5	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
MeaB	PF03308.16	gi|227827824|ref|YP_002829604.1|	-	0.064	12.2	0.0	0.11	11.5	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATP_bind_1	PF03029.17	gi|227827824|ref|YP_002829604.1|	-	0.065	13.0	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RNA_helicase	PF00910.22	gi|227827824|ref|YP_002829604.1|	-	0.1	13.0	0.0	0.29	11.6	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
AAA_19	PF13245.6	gi|227827824|ref|YP_002829604.1|	-	0.11	12.9	0.0	0.34	11.2	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Hydin_ADK	PF17213.3	gi|227827824|ref|YP_002829604.1|	-	0.13	12.6	0.1	0.22	11.8	0.1	1.3	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
AAA_30	PF13604.6	gi|227827824|ref|YP_002829604.1|	-	0.19	11.4	0.0	0.34	10.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SNO	PF01174.19	gi|227827825|ref|YP_002829605.1|	-	1.2e-47	162.2	0.0	1.4e-47	161.9	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|227827825|ref|YP_002829605.1|	-	9e-12	45.0	0.1	2e-11	43.8	0.1	1.7	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|227827825|ref|YP_002829605.1|	-	9.3e-09	35.2	0.0	1.2e-08	34.8	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.28	gi|227827825|ref|YP_002829605.1|	-	1.3e-06	28.3	0.1	1.5e-05	24.9	0.1	2.0	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|227827825|ref|YP_002829605.1|	-	0.0011	18.9	0.1	0.0016	18.3	0.1	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
SOR_SNZ	PF01680.17	gi|227827826|ref|YP_002829606.1|	-	7.4e-100	332.9	3.3	9.4e-100	332.6	3.3	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|227827826|ref|YP_002829606.1|	-	5.5e-06	25.9	2.8	5e-05	22.7	0.1	2.4	3	0	0	3	3	3	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.21	gi|227827826|ref|YP_002829606.1|	-	5.8e-05	22.4	0.0	0.13	11.5	0.0	2.3	2	0	0	2	2	2	2	Indole-3-glycerol	phosphate	synthase
Dus	PF01207.17	gi|227827826|ref|YP_002829606.1|	-	0.0029	16.7	0.4	0.38	9.8	0.0	2.8	2	2	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
OMPdecase	PF00215.24	gi|227827826|ref|YP_002829606.1|	-	0.0037	16.9	0.5	2	8.0	0.1	2.7	2	1	1	3	3	3	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
NanE	PF04131.14	gi|227827826|ref|YP_002829606.1|	-	0.016	14.4	0.3	0.4	9.8	0.0	2.4	2	1	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
NMO	PF03060.15	gi|227827826|ref|YP_002829606.1|	-	0.025	14.0	0.1	0.025	14.0	0.1	2.1	2	1	0	2	2	2	0	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|227827826|ref|YP_002829606.1|	-	0.034	13.6	0.5	1.5	8.2	0.1	2.8	2	2	0	2	2	2	0	Histidine	biosynthesis	protein
TetR_C_27	PF17935.1	gi|227827826|ref|YP_002829606.1|	-	0.038	14.0	0.0	0.1	12.7	0.0	1.7	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Ribosomal_S26e	PF01283.19	gi|227827827|ref|YP_002829607.1|	-	1.3e-22	80.3	3.7	1.5e-22	80.1	3.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
Lar_restr_allev	PF14354.6	gi|227827827|ref|YP_002829607.1|	-	0.018	15.4	2.4	0.23	11.8	0.2	2.1	1	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
zf_UBZ	PF18439.1	gi|227827827|ref|YP_002829607.1|	-	0.072	12.7	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|227827827|ref|YP_002829607.1|	-	0.12	11.8	0.8	0.12	11.8	0.8	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|227827827|ref|YP_002829607.1|	-	1.1	9.4	5.6	3.4	7.9	0.5	2.3	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
tRNA-synt_2b	PF00587.25	gi|227827828|ref|YP_002829608.1|	-	2.2e-26	92.9	0.0	3.4e-26	92.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|227827828|ref|YP_002829608.1|	-	5.4e-18	64.9	0.6	1.1e-17	63.9	0.6	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.11	gi|227827828|ref|YP_002829608.1|	-	1.3e-14	54.2	0.4	2.8e-14	53.1	0.4	1.6	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
tRNA-synt_2	PF00152.20	gi|227827828|ref|YP_002829608.1|	-	0.0045	16.1	1.5	0.013	14.6	1.5	1.9	1	1	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
ATP-synt_C	PF00137.21	gi|227827829|ref|YP_002829609.1|	-	3.6e-14	52.8	19.8	3.6e-14	52.8	19.8	1.6	2	0	0	2	2	2	1	ATP	synthase	subunit	C
Nitrate_red_gam	PF02665.14	gi|227827829|ref|YP_002829609.1|	-	0.34	10.4	3.9	0.39	10.2	3.9	1.3	1	1	0	1	1	1	0	Nitrate	reductase	gamma	subunit
ATP-synt_E_2	PF08112.11	gi|227827830|ref|YP_002829610.1|	-	5e-25	87.5	12.3	5.4e-25	87.4	12.3	1.0	1	0	0	1	1	1	1	ATP	synthase	epsilon	subunit
Orthopox_B11R	PF07033.11	gi|227827830|ref|YP_002829610.1|	-	1	9.2	4.0	0.65	9.8	1.4	1.8	1	1	1	2	2	2	0	Orthopoxvirus	B11R	protein
ATP-synt_D	PF01813.17	gi|227827831|ref|YP_002829611.1|	-	5.1e-44	150.5	8.0	5.7e-44	150.3	8.0	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
GPAT_N	PF14829.6	gi|227827831|ref|YP_002829611.1|	-	9.9e-05	22.3	0.6	9.9e-05	22.3	0.6	1.9	2	0	0	2	2	2	1	Glycerol-3-phosphate	acyltransferase	N-terminal
DUF4763	PF15960.5	gi|227827831|ref|YP_002829611.1|	-	0.0098	15.2	0.6	0.028	13.7	0.0	1.9	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4763)
NHR2	PF08788.11	gi|227827831|ref|YP_002829611.1|	-	0.011	15.5	0.0	1.8	8.4	0.0	2.4	2	0	0	2	2	2	0	NHR2	domain	like
DUF3829	PF12889.7	gi|227827831|ref|YP_002829611.1|	-	0.016	14.7	3.9	0.042	13.3	3.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
DNTTIP1_dimer	PF18192.1	gi|227827831|ref|YP_002829611.1|	-	0.04	14.3	2.6	0.088	13.2	0.4	2.4	2	1	0	2	2	2	0	DNTTIP1	dimerisation	domain
EDR1	PF14381.6	gi|227827831|ref|YP_002829611.1|	-	0.055	13.2	0.0	0.091	12.5	0.0	1.4	1	1	0	1	1	1	0	Ethylene-responsive	protein	kinase	Le-CTR1
Anoctamin	PF04547.12	gi|227827831|ref|YP_002829611.1|	-	0.18	10.6	1.3	0.19	10.5	0.8	1.4	1	1	0	1	1	1	0	Calcium-activated	chloride	channel
KIP1	PF07765.12	gi|227827831|ref|YP_002829611.1|	-	0.25	11.5	2.4	0.32	11.1	0.1	2.3	2	1	0	2	2	2	0	KIP1-like	protein
ATP-synt_ab	PF00006.25	gi|227827832|ref|YP_002829612.1|	-	2e-65	220.4	0.0	2.6e-65	220.1	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|227827832|ref|YP_002829612.1|	-	2.1e-12	47.4	1.1	7.1e-12	45.7	0.7	2.1	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|227827832|ref|YP_002829612.1|	-	0.036	14.2	0.0	0.14	12.3	0.1	2.0	2	0	0	2	2	2	0	HAS	barrel	domain
ATP-synt_ab	PF00006.25	gi|227827833|ref|YP_002829613.1|	-	8.1e-85	283.8	0.0	1.1e-84	283.4	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|227827833|ref|YP_002829613.1|	-	2.5e-46	156.5	0.1	4.3e-46	155.7	0.1	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|227827833|ref|YP_002829613.1|	-	4.5e-15	55.9	0.3	1.1e-14	54.6	0.3	1.7	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.6	gi|227827833|ref|YP_002829613.1|	-	0.015	15.6	0.2	0.04	14.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Biotin_lipoyl	PF00364.22	gi|227827833|ref|YP_002829613.1|	-	0.14	12.0	0.3	0.39	10.6	0.3	1.8	1	0	0	1	1	1	0	Biotin-requiring	enzyme
vATP-synt_E	PF01991.18	gi|227827834|ref|YP_002829614.1|	-	9.9e-10	38.2	14.2	1.4e-08	34.4	14.1	2.8	1	1	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
FliH	PF02108.16	gi|227827834|ref|YP_002829614.1|	-	0.0033	17.5	1.9	0.031	14.3	0.2	2.4	1	1	1	2	2	2	1	Flagellar	assembly	protein	FliH
V-ATPase_G_2	PF16999.5	gi|227827834|ref|YP_002829614.1|	-	0.016	15.6	3.2	0.023	15.1	2.6	1.5	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
Phage_sheath_1	PF04984.14	gi|227827834|ref|YP_002829614.1|	-	0.035	14.0	0.4	0.41	10.5	0.1	2.3	2	1	0	2	2	2	0	Phage	tail	sheath	protein	subtilisin-like	domain
DUF445	PF04286.12	gi|227827834|ref|YP_002829614.1|	-	0.057	13.2	10.0	0.32	10.8	0.7	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF445)
RB_A	PF01858.17	gi|227827834|ref|YP_002829614.1|	-	0.5	10.2	5.5	0.7	9.7	5.0	1.5	1	1	0	1	1	1	0	Retinoblastoma-associated	protein	A	domain
DUF3298	PF11738.8	gi|227827834|ref|YP_002829614.1|	-	0.56	11.3	4.3	2	9.5	0.1	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3298)
YtxH	PF12732.7	gi|227827834|ref|YP_002829614.1|	-	0.57	10.8	6.5	10	6.7	6.4	2.3	1	1	0	1	1	1	0	YtxH-like	protein
Spore_II_R	PF09551.10	gi|227827834|ref|YP_002829614.1|	-	1.5	9.3	9.1	4.5	7.7	2.2	2.2	1	1	1	2	2	2	0	Stage	II	sporulation	protein	R	(spore_II_R)
HSCB_C	PF07743.13	gi|227827834|ref|YP_002829614.1|	-	5.4	7.6	10.2	7.4	7.1	6.0	2.8	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
ATP-synt_F	PF01990.17	gi|227827835|ref|YP_002829615.1|	-	9.8e-14	51.5	0.1	1.2e-13	51.2	0.1	1.1	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
V_ATPase_I	PF01496.19	gi|227827836|ref|YP_002829616.1|	-	1.1e-35	122.8	18.4	1e-26	93.2	0.0	3.9	3	1	0	4	4	4	3	V-type	ATPase	116kDa	subunit	family
Sec34	PF04136.15	gi|227827836|ref|YP_002829616.1|	-	0.32	10.9	2.7	0.82	9.5	0.3	2.2	2	0	0	2	2	2	0	Sec34-like	family
DUF3450	PF11932.8	gi|227827836|ref|YP_002829616.1|	-	0.4	9.9	4.3	0.75	9.0	1.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
APG6_N	PF17675.1	gi|227827836|ref|YP_002829616.1|	-	1.1	9.8	6.1	0.37	11.3	0.8	2.2	2	0	0	2	2	2	0	Apg6	coiled-coil	region
GAS	PF13851.6	gi|227827836|ref|YP_002829616.1|	-	2	7.8	12.9	0.51	9.7	1.3	2.2	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
KASH_CCD	PF14662.6	gi|227827836|ref|YP_002829616.1|	-	3.6	7.4	10.2	1.2	8.9	1.8	2.4	2	0	0	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
DUF4140	PF13600.6	gi|227827836|ref|YP_002829616.1|	-	3.6	8.1	4.5	2.6	8.5	0.4	2.4	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
GrpE	PF01025.19	gi|227827836|ref|YP_002829616.1|	-	3.6	7.2	8.9	8.2	6.1	0.7	2.4	2	0	0	2	2	2	0	GrpE
tRNA-synt_1g	PF09334.11	gi|227827837|ref|YP_002829617.1|	-	6.3e-154	512.4	0.1	7.8e-154	512.1	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|227827837|ref|YP_002829617.1|	-	1.2e-10	40.3	0.7	5.4e-06	24.9	0.0	3.0	2	1	1	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|227827837|ref|YP_002829617.1|	-	1.8e-05	24.8	0.1	3.5e-05	23.8	0.1	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
DZR	PF12773.7	gi|227827837|ref|YP_002829617.1|	-	0.42	10.7	3.9	0.75	9.9	3.1	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-C2HC5	PF06221.13	gi|227827837|ref|YP_002829617.1|	-	1	9.4	4.2	0.54	10.3	0.7	2.0	2	0	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-ribbon_3	PF13248.6	gi|227827837|ref|YP_002829617.1|	-	1.4	8.4	12.0	14	5.3	3.9	3.3	2	1	1	3	3	3	0	zinc-ribbon	domain
DNA_primase_lrg	PF04104.14	gi|227827838|ref|YP_002829618.1|	-	5.8e-14	52.1	5.0	3.1e-07	30.1	0.1	2.9	2	1	1	3	3	3	2	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
VP4_helical	PF17478.2	gi|227827838|ref|YP_002829618.1|	-	0.028	13.8	0.6	0.044	13.2	0.6	1.3	1	0	0	1	1	1	0	Rotavirus	VP4	helical	domain
CDP-OH_P_transf	PF01066.21	gi|227827839|ref|YP_002829619.1|	-	2.9e-13	50.4	1.6	2.9e-13	50.4	1.6	2.6	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
Methyltransf_31	PF13847.6	gi|227827841|ref|YP_002829621.1|	-	1.1e-10	41.5	0.0	1.8e-10	40.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
DOT1	PF08123.13	gi|227827841|ref|YP_002829621.1|	-	6.3e-09	35.7	0.1	9.7e-08	31.8	0.1	2.0	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
PrmA	PF06325.13	gi|227827841|ref|YP_002829621.1|	-	8.4e-09	35.2	0.3	1e-08	34.9	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|227827841|ref|YP_002829621.1|	-	1.3e-08	35.5	0.0	2e-08	34.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|227827841|ref|YP_002829621.1|	-	1.6e-07	31.4	0.1	2e-07	31.1	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|227827841|ref|YP_002829621.1|	-	6.4e-07	28.9	0.0	7.8e-07	28.7	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.17	gi|227827841|ref|YP_002829621.1|	-	6.5e-07	29.0	0.1	9.1e-07	28.5	0.1	1.3	1	1	0	1	1	1	1	Putative	methyltransferase
MTS	PF05175.14	gi|227827841|ref|YP_002829621.1|	-	3.1e-05	23.6	0.1	4.1e-05	23.2	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|227827841|ref|YP_002829621.1|	-	0.00011	22.8	0.0	0.00017	22.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|227827841|ref|YP_002829621.1|	-	0.00016	21.1	0.0	0.00019	20.8	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
tRNA_U5-meth_tr	PF05958.11	gi|227827841|ref|YP_002829621.1|	-	0.00022	20.3	0.0	0.00024	20.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
TrmK	PF04816.12	gi|227827841|ref|YP_002829621.1|	-	0.0023	17.5	0.2	0.009	15.6	0.1	1.7	1	1	1	2	2	2	1	tRNA	(adenine(22)-N(1))-methyltransferase
MetW	PF07021.12	gi|227827841|ref|YP_002829621.1|	-	0.0023	17.5	0.1	0.0028	17.3	0.1	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_15	PF09445.10	gi|227827841|ref|YP_002829621.1|	-	0.0025	17.4	0.0	0.0027	17.3	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_12	PF08242.12	gi|227827841|ref|YP_002829621.1|	-	0.0029	18.3	0.1	0.0082	16.9	0.1	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|227827841|ref|YP_002829621.1|	-	0.0046	16.4	0.0	0.0065	15.9	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
N6_N4_Mtase	PF01555.18	gi|227827841|ref|YP_002829621.1|	-	0.0064	16.2	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	DNA	methylase
Met_10	PF02475.16	gi|227827841|ref|YP_002829621.1|	-	0.0079	16.0	0.2	0.01	15.6	0.2	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
UPF0020	PF01170.18	gi|227827841|ref|YP_002829621.1|	-	0.011	15.4	0.1	0.36	10.5	0.1	2.1	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.6	gi|227827841|ref|YP_002829621.1|	-	0.02	14.7	0.0	0.035	13.9	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|227827841|ref|YP_002829621.1|	-	0.021	14.7	0.0	0.031	14.1	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
Methyltransf_2	PF00891.18	gi|227827841|ref|YP_002829621.1|	-	0.024	14.0	0.0	0.026	13.8	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
PCMT	PF01135.19	gi|227827841|ref|YP_002829621.1|	-	0.036	13.8	0.0	0.045	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_32	PF13679.6	gi|227827841|ref|YP_002829621.1|	-	0.094	12.7	0.0	0.11	12.5	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
DUF2286	PF10051.9	gi|227827842|ref|YP_002829622.1|	-	2.6e-52	176.2	8.3	3e-52	176.0	8.3	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2286)
Thr_synth_N	PF14821.6	gi|227827842|ref|YP_002829622.1|	-	0.04	14.1	0.2	0.12	12.6	0.1	1.8	2	0	0	2	2	2	0	Threonine	synthase	N	terminus
DUF2027	PF09640.10	gi|227827842|ref|YP_002829622.1|	-	0.1	12.2	2.3	3	7.4	0.8	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2027)
DNA_pol_B	PF00136.21	gi|227827843|ref|YP_002829623.1|	-	1.1e-54	185.9	1.6	1.8e-54	185.2	1.6	1.3	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|227827843|ref|YP_002829623.1|	-	3.4e-29	102.0	1.4	3.4e-29	102.0	1.4	1.9	2	0	0	2	2	2	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_exo2	PF10108.9	gi|227827843|ref|YP_002829623.1|	-	8.3e-06	25.6	0.0	2.5e-05	24.0	0.0	1.8	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_H_2	PF13482.6	gi|227827843|ref|YP_002829623.1|	-	9.6e-06	25.7	0.3	5.7e-05	23.2	0.3	2.4	1	1	0	1	1	1	1	RNase_H	superfamily
ACT_6	PF13740.6	gi|227827843|ref|YP_002829623.1|	-	0.012	15.5	0.1	0.045	13.7	0.0	2.0	2	0	0	2	2	2	0	ACT	domain
Ribo_biogen_C	PF04034.13	gi|227827844|ref|YP_002829624.1|	-	5.1e-40	136.1	0.1	6.1e-40	135.9	0.1	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|227827844|ref|YP_002829624.1|	-	1.2e-12	47.4	0.3	1.9e-12	46.8	0.3	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
MS_channel	PF00924.18	gi|227827845|ref|YP_002829625.1|	-	2.4e-19	69.7	0.5	2.4e-19	69.7	0.5	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
SAM_DrpA	PF18255.1	gi|227827846|ref|YP_002829626.1|	-	0.018	15.3	2.6	0.034	14.4	0.3	2.5	2	0	0	2	2	2	0	DNA	processing	protein	A	sterile	alpha	motif	domain
Herpes_UL24	PF01646.16	gi|227827846|ref|YP_002829626.1|	-	0.11	12.4	0.3	0.38	10.7	0.1	1.7	2	0	0	2	2	2	0	Herpes	virus	proteins	UL24	and	UL76
PGK	PF00162.19	gi|227827847|ref|YP_002829627.1|	-	7.9e-102	341.0	0.1	8.9e-102	340.8	0.1	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Fe-ADH	PF00465.19	gi|227827847|ref|YP_002829627.1|	-	0.12	11.2	0.0	0.19	10.5	0.0	1.2	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
Gp_dh_C	PF02800.20	gi|227827848|ref|YP_002829628.1|	-	5.8e-20	71.5	5.8	8.9e-20	70.9	5.8	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|227827848|ref|YP_002829628.1|	-	6.5e-11	42.4	0.2	2e-10	40.9	0.0	1.9	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|227827848|ref|YP_002829628.1|	-	1.2e-05	25.5	2.5	0.0001	22.6	0.0	3.1	3	1	0	3	3	3	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|227827848|ref|YP_002829628.1|	-	0.0045	17.6	0.3	0.025	15.2	0.0	2.5	3	1	0	3	3	3	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|227827848|ref|YP_002829628.1|	-	0.0051	16.2	0.7	0.31	10.4	0.1	3.0	2	1	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|227827848|ref|YP_002829628.1|	-	0.041	14.1	1.5	0.21	11.9	0.0	2.7	2	2	1	3	3	3	0	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_2	PF03446.15	gi|227827848|ref|YP_002829628.1|	-	0.15	12.2	0.8	3.2	7.9	0.0	2.7	2	1	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Usp	PF00582.26	gi|227827849|ref|YP_002829629.1|	-	1.5e-19	70.9	0.0	3.8e-18	66.3	0.0	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
Lip_prot_lig_C	PF10437.9	gi|227827849|ref|YP_002829629.1|	-	0.073	13.1	0.5	0.11	12.5	0.5	1.3	1	0	0	1	1	1	0	Bacterial	lipoate	protein	ligase	C-terminus
SHMT	PF00464.19	gi|227827850|ref|YP_002829630.1|	-	1.6e-65	221.3	0.1	2.2e-65	220.8	0.1	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|227827850|ref|YP_002829630.1|	-	7.5e-09	35.2	0.0	2.8e-08	33.3	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|227827850|ref|YP_002829630.1|	-	1.6e-06	27.6	0.0	2.4e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|227827850|ref|YP_002829630.1|	-	0.00025	20.1	0.0	0.0014	17.7	0.0	1.9	2	0	0	2	2	2	1	Aminotransferase	class-V
DUF3867	PF12983.7	gi|227827850|ref|YP_002829630.1|	-	0.019	15.0	2.9	0.019	15.0	2.9	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3867)
Adenine_glyco	PF03352.13	gi|227827850|ref|YP_002829630.1|	-	0.049	13.4	2.0	0.43	10.3	0.0	3.1	4	0	0	4	4	4	0	Methyladenine	glycosylase
DUF919	PF06034.11	gi|227827850|ref|YP_002829630.1|	-	4.1	7.3	6.8	2.2	8.2	1.0	2.9	3	0	0	3	3	3	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF919)
HMG-CoA_red	PF00368.18	gi|227827851|ref|YP_002829631.1|	-	1.1e-130	436.0	0.4	1.2e-130	435.8	0.4	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
OB_aCoA_assoc	PF01796.17	gi|227827852|ref|YP_002829632.1|	-	3.8e-15	55.6	0.0	4.8e-15	55.3	0.0	1.1	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|227827852|ref|YP_002829632.1|	-	4.1e-07	29.7	0.3	6.7e-07	29.1	0.3	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TackOD1	PF18551.1	gi|227827852|ref|YP_002829632.1|	-	0.0016	18.2	0.7	0.0021	17.8	0.7	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
TLP1_add_C	PF18313.1	gi|227827852|ref|YP_002829632.1|	-	0.0045	16.9	0.0	0.006	16.5	0.0	1.3	1	0	0	1	1	1	1	Thiolase-like	protein	type	1	additional	C-terminal	domain
NOB1_Zn_bind	PF08772.11	gi|227827852|ref|YP_002829632.1|	-	0.0068	16.5	1.4	0.018	15.2	1.4	1.6	1	1	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
DZR	PF12773.7	gi|227827852|ref|YP_002829632.1|	-	0.011	15.8	0.5	0.015	15.3	0.5	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|227827852|ref|YP_002829632.1|	-	0.012	15.5	1.7	0.98	9.4	0.1	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|227827852|ref|YP_002829632.1|	-	0.013	15.1	0.3	5.7	6.7	0.1	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
HypA	PF01155.19	gi|227827852|ref|YP_002829632.1|	-	0.11	12.5	0.4	0.18	11.9	0.4	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|227827852|ref|YP_002829632.1|	-	0.16	12.1	3.2	0.6	10.3	3.2	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227827852|ref|YP_002829632.1|	-	0.22	11.3	7.4	0.68	9.7	1.3	2.2	1	1	2	3	3	3	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|227827852|ref|YP_002829632.1|	-	2.6	8.2	5.6	2.4	8.3	0.3	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zn-ribbon_14	PF16503.5	gi|227827852|ref|YP_002829632.1|	-	3.5	7.2	6.5	3.3	7.3	0.5	2.3	2	0	0	2	2	2	0	Zinc-ribbon
Thiolase_N	PF00108.23	gi|227827853|ref|YP_002829633.1|	-	5.5e-12	45.6	0.0	1.2e-11	44.5	0.0	1.5	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|227827853|ref|YP_002829633.1|	-	0.0001	22.1	0.1	0.0028	17.4	0.0	2.6	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
ketoacyl-synt	PF00109.26	gi|227827853|ref|YP_002829633.1|	-	0.12	11.9	0.0	0.26	10.8	0.0	1.5	2	0	0	2	2	2	0	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III_C	PF08541.10	gi|227827854|ref|YP_002829634.1|	-	6e-12	45.6	0.0	6.5e-11	42.3	0.0	2.4	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
HMG_CoA_synt_C	PF08540.10	gi|227827854|ref|YP_002829634.1|	-	7.7e-05	22.4	0.2	0.016	14.8	0.0	2.2	1	1	1	2	2	2	2	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
ACP_syn_III	PF08545.10	gi|227827854|ref|YP_002829634.1|	-	0.00029	20.6	1.7	0.00035	20.4	0.6	1.7	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Thiolase_C	PF02803.18	gi|227827854|ref|YP_002829634.1|	-	0.043	13.5	0.0	0.088	12.5	0.0	1.5	1	0	0	1	1	1	0	Thiolase,	C-terminal	domain
AdoMet_dc	PF02675.15	gi|227827855|ref|YP_002829635.1|	-	5.1e-33	113.5	0.0	5.8e-33	113.3	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
YbaB_DNA_bd	PF02575.16	gi|227827855|ref|YP_002829635.1|	-	0.016	15.4	0.0	0.026	14.7	0.0	1.3	1	0	0	1	1	1	0	YbaB/EbfC	DNA-binding	family
MazE_antitoxin	PF04014.18	gi|227827857|ref|YP_002829637.1|	-	3.8e-08	33.1	3.4	4.6e-08	32.8	2.9	1.4	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PIN	PF01850.21	gi|227827858|ref|YP_002829638.1|	-	2.1e-19	70.2	1.0	2.5e-19	70.0	1.0	1.1	1	0	0	1	1	1	1	PIN	domain
DDE_Tnp_IS240	PF13610.6	gi|227827859|ref|YP_002829639.1|	-	1.3e-05	25.5	1.2	2.1e-05	24.8	1.0	1.4	2	0	0	2	2	2	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227827859|ref|YP_002829639.1|	-	0.011	15.2	0.2	0.021	14.3	0.2	1.4	1	0	0	1	1	1	0	Transposase	IS66	family
TypeIII_RM_meth	PF12564.8	gi|227827864|ref|YP_002829644.1|	-	0.013	15.6	1.9	0.11	12.6	0.5	2.3	2	0	0	2	2	2	0	Type	III	restriction/modification	enzyme	methylation	subunit
TPR_12	PF13424.6	gi|227827865|ref|YP_002829645.1|	-	1e-10	41.7	10.7	0.0013	18.9	1.1	5.4	4	2	1	6	6	6	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|227827865|ref|YP_002829645.1|	-	2.4e-06	27.3	28.8	0.12	12.7	1.2	7.8	8	0	0	8	8	8	4	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|227827865|ref|YP_002829645.1|	-	2.3e-05	24.1	13.9	3.6	7.6	0.2	7.3	8	0	0	8	8	8	1	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|227827865|ref|YP_002829645.1|	-	0.00012	22.5	1.5	21	6.3	0.0	6.4	5	3	3	8	8	8	0	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|227827865|ref|YP_002829645.1|	-	0.00014	22.2	12.5	2.9	8.7	0.0	6.8	7	1	1	8	8	8	1	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|227827865|ref|YP_002829645.1|	-	0.00015	21.9	3.8	0.00015	21.9	3.8	4.2	3	2	2	5	5	5	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_2	PF07719.17	gi|227827865|ref|YP_002829645.1|	-	0.0014	18.6	16.3	1.6	9.1	0.0	6.4	7	1	0	7	7	5	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|227827865|ref|YP_002829645.1|	-	0.0019	18.1	8.8	5.6	7.2	0.3	6.3	5	2	0	5	5	5	1	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|227827865|ref|YP_002829645.1|	-	0.0062	17.2	0.1	13	6.5	0.0	3.5	2	1	1	3	3	3	0	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|227827865|ref|YP_002829645.1|	-	0.0084	16.6	15.2	0.55	10.8	0.2	5.9	3	1	4	7	7	6	2	Tetratricopeptide	repeat
TPR_15	PF13429.6	gi|227827865|ref|YP_002829645.1|	-	0.015	14.5	7.1	0.1	11.8	1.7	3.2	1	1	2	3	3	3	0	Tetratricopeptide	repeat
TPR_20	PF14561.6	gi|227827865|ref|YP_002829645.1|	-	0.031	14.6	0.1	0.031	14.6	0.1	2.6	4	0	0	4	4	4	0	Tetratricopeptide	repeat
Titin_Ig-rpts	PF06582.12	gi|227827865|ref|YP_002829645.1|	-	0.34	10.9	4.7	1.4	8.9	0.1	2.6	2	0	0	2	2	2	0	Titin	repeat
TPR_1	PF00515.28	gi|227827865|ref|YP_002829645.1|	-	0.57	10.1	19.7	5.4	7.0	0.6	6.0	7	1	1	8	8	8	0	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|227827865|ref|YP_002829645.1|	-	0.76	9.5	6.5	14	5.4	0.1	3.9	4	0	0	4	4	4	0	TPR	repeat
MazE_antitoxin	PF04014.18	gi|227827866|ref|YP_002829646.1|	-	1.9e-09	37.2	0.2	2.2e-09	37.0	0.2	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|227827866|ref|YP_002829646.1|	-	0.0029	18.0	0.1	0.0033	17.8	0.1	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
eIF-1a	PF01176.19	gi|227827866|ref|YP_002829646.1|	-	0.006	16.4	0.2	0.0071	16.1	0.2	1.3	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
IU_nuc_hydro	PF01156.19	gi|227827867|ref|YP_002829647.1|	-	8.7e-75	252.1	0.1	1e-74	251.9	0.1	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
tRNA-synt_1	PF00133.22	gi|227827868|ref|YP_002829648.1|	-	1.5e-58	198.5	1.6	7.6e-47	159.9	1.2	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|227827868|ref|YP_002829648.1|	-	1.7e-25	89.6	0.8	2.6e-12	46.2	0.0	3.9	3	1	0	4	4	4	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|227827868|ref|YP_002829648.1|	-	4.8e-21	75.3	2.9	1.4e-20	73.8	2.9	1.8	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|227827868|ref|YP_002829648.1|	-	1.4e-15	57.5	3.8	8.7e-09	35.1	0.0	3.2	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|227827868|ref|YP_002829648.1|	-	5.2e-09	35.9	3.7	2e-08	34.0	0.5	2.8	3	0	0	3	3	3	1	Leucyl-tRNA	synthetase,	Domain	2
LysE	PF01810.18	gi|227827869|ref|YP_002829649.1|	-	0.0013	18.2	0.5	0.0013	18.2	0.5	2.2	2	0	0	2	2	2	1	LysE	type	translocator
DUF5373	PF17343.2	gi|227827870|ref|YP_002829650.1|	-	0.032	14.1	2.3	0.039	13.8	2.3	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5373)
RseC_MucC	PF04246.12	gi|227827870|ref|YP_002829650.1|	-	0.044	13.7	2.7	0.051	13.5	2.7	1.1	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
Baculo_11_kDa	PF06143.11	gi|227827870|ref|YP_002829650.1|	-	0.073	12.7	3.0	0.067	12.8	2.4	1.3	1	1	0	1	1	1	0	Baculovirus	11	kDa	family
EOS1	PF12326.8	gi|227827870|ref|YP_002829650.1|	-	0.18	11.7	2.3	0.18	11.7	2.3	1.2	1	0	0	1	1	1	0	N-glycosylation	protein
DUF5542	PF17696.1	gi|227827870|ref|YP_002829650.1|	-	1.7	8.8	4.4	2.6	8.2	4.4	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5542)
UPF0542	PF15086.6	gi|227827870|ref|YP_002829650.1|	-	3.7	7.5	6.7	1.6	8.8	4.4	1.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0542
PriX	PF18689.1	gi|227827871|ref|YP_002829651.1|	-	4.3e-39	132.8	4.0	7e-39	132.2	4.0	1.3	1	0	0	1	1	1	1	Primase	X
ResB	PF05140.14	gi|227827873|ref|YP_002829653.1|	-	0.1	11.3	0.0	0.13	11.0	0.0	1.1	1	0	0	1	1	1	0	ResB-like	family
DUF4384	PF14326.6	gi|227827876|ref|YP_002829656.1|	-	0.31	11.2	3.7	2.7	8.2	0.1	3.8	5	1	0	5	5	5	0	Domain	of	unknown	function	(DUF4384)
P5CR_dimer	PF14748.6	gi|227827878|ref|YP_002829658.1|	-	1.2e-28	99.4	0.1	1.9e-28	98.7	0.1	1.4	1	0	0	1	1	1	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.17	gi|227827878|ref|YP_002829658.1|	-	1.2e-19	70.6	0.2	2.8e-19	69.5	0.2	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|227827878|ref|YP_002829658.1|	-	8.8e-06	25.2	0.0	1.4e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|227827878|ref|YP_002829658.1|	-	1.5e-05	25.1	2.4	0.00018	21.6	1.8	2.5	1	1	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Rossmann-like	PF10727.9	gi|227827878|ref|YP_002829658.1|	-	0.00011	22.1	0.1	0.00018	21.4	0.1	1.4	1	0	0	1	1	1	1	Rossmann-like	domain
DapB_N	PF01113.20	gi|227827878|ref|YP_002829658.1|	-	0.00038	20.6	0.1	0.00081	19.5	0.1	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
PDH	PF02153.17	gi|227827878|ref|YP_002829658.1|	-	0.0004	19.5	0.9	0.0038	16.3	0.2	2.2	2	0	0	2	2	2	1	Prephenate	dehydrogenase
NAD_binding_2	PF03446.15	gi|227827878|ref|YP_002829658.1|	-	0.00077	19.7	0.2	0.002	18.3	0.0	2.0	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.16	gi|227827878|ref|YP_002829658.1|	-	0.0039	16.9	0.3	0.013	15.1	0.3	1.9	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.20	gi|227827878|ref|YP_002829658.1|	-	0.0057	16.7	0.2	0.012	15.6	0.1	1.7	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|227827878|ref|YP_002829658.1|	-	0.03	14.6	0.1	0.056	13.7	0.1	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
SH3_14	PF18343.1	gi|227827878|ref|YP_002829658.1|	-	0.066	13.3	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	Dda	helicase	SH3	domain
Gp_dh_N	PF00044.24	gi|227827878|ref|YP_002829658.1|	-	0.088	13.2	0.2	0.32	11.3	0.1	2.0	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|227827878|ref|YP_002829658.1|	-	0.12	13.1	0.0	0.23	12.3	0.0	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DUF72	PF01904.18	gi|227827879|ref|YP_002829659.1|	-	1.7e-36	126.4	2.0	2e-36	126.2	2.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
PALP	PF00291.25	gi|227827880|ref|YP_002829660.1|	-	3.3e-65	220.4	0.1	3.9e-65	220.2	0.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Zn-ribbon_8	PF09723.10	gi|227827880|ref|YP_002829660.1|	-	0.0095	16.0	0.1	0.0095	16.0	0.1	1.8	2	0	0	2	2	2	1	Zinc	ribbon	domain
DFP	PF04127.15	gi|227827880|ref|YP_002829660.1|	-	0.066	13.0	0.2	0.12	12.2	0.2	1.3	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
BPD_transp_1	PF00528.22	gi|227827881|ref|YP_002829661.1|	-	1.5e-12	47.6	22.0	1.5e-12	47.6	22.0	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|227827882|ref|YP_002829662.1|	-	8e-11	42.0	19.3	8e-11	42.0	19.3	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|227827883|ref|YP_002829663.1|	-	2.1e-50	172.0	6.8	2.1e-50	172.0	6.8	1.6	1	1	1	2	2	2	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|227827883|ref|YP_002829663.1|	-	1.4e-08	35.1	6.6	2.2e-08	34.4	6.6	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.7	gi|227827883|ref|YP_002829663.1|	-	3.8e-07	29.4	0.0	8.3e-07	28.3	0.0	1.6	1	1	0	1	1	1	1	PBP	superfamily	domain
Pilin_N	PF07790.11	gi|227827883|ref|YP_002829663.1|	-	0.074	14.0	3.6	0.2	12.6	3.6	1.8	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
DUF4834	PF16118.5	gi|227827883|ref|YP_002829663.1|	-	0.11	13.5	1.0	0.19	12.7	1.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
DUF2749	PF10907.8	gi|227827883|ref|YP_002829663.1|	-	0.16	12.2	1.9	0.4	10.9	1.9	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2749)
ABC_tran	PF00005.27	gi|227827884|ref|YP_002829664.1|	-	8.8e-35	120.2	0.0	1.2e-34	119.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227827884|ref|YP_002829664.1|	-	3.7e-09	36.8	0.4	0.0013	18.6	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227827884|ref|YP_002829664.1|	-	1e-08	34.9	1.2	1.3e-07	31.3	1.2	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227827884|ref|YP_002829664.1|	-	0.0003	20.5	0.1	0.00095	18.9	0.0	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|227827884|ref|YP_002829664.1|	-	0.00049	20.0	0.3	0.0027	17.6	0.0	2.2	2	1	0	3	3	3	1	RsgA	GTPase
AAA_30	PF13604.6	gi|227827884|ref|YP_002829664.1|	-	0.00071	19.4	0.0	0.042	13.6	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|227827884|ref|YP_002829664.1|	-	0.0014	17.9	0.0	0.0017	17.6	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
ABC_ATPase	PF09818.9	gi|227827884|ref|YP_002829664.1|	-	0.002	17.0	0.1	0.72	8.6	0.0	2.2	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA	PF00004.29	gi|227827884|ref|YP_002829664.1|	-	0.0021	18.5	0.4	0.013	15.9	0.4	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|227827884|ref|YP_002829664.1|	-	0.0025	18.4	0.2	0.009	16.6	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|227827884|ref|YP_002829664.1|	-	0.0036	17.1	1.5	0.098	12.3	1.4	2.0	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227827884|ref|YP_002829664.1|	-	0.0036	17.6	0.1	0.016	15.5	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|227827884|ref|YP_002829664.1|	-	0.0051	16.2	0.8	0.12	11.8	0.2	2.1	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_23	PF13476.6	gi|227827884|ref|YP_002829664.1|	-	0.0071	16.9	3.5	0.016	15.7	3.5	1.8	1	1	0	1	1	1	1	AAA	domain
DUF87	PF01935.17	gi|227827884|ref|YP_002829664.1|	-	0.013	15.6	0.2	0.077	13.1	0.0	2.0	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
Rad17	PF03215.15	gi|227827884|ref|YP_002829664.1|	-	0.018	15.0	0.0	0.035	14.0	0.0	1.5	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|227827884|ref|YP_002829664.1|	-	0.022	15.2	0.1	0.035	14.5	0.1	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
T2SSE	PF00437.20	gi|227827884|ref|YP_002829664.1|	-	0.043	12.9	0.1	0.12	11.4	0.0	1.7	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
MeaB	PF03308.16	gi|227827884|ref|YP_002829664.1|	-	0.076	12.0	0.0	0.14	11.1	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_24	PF13479.6	gi|227827884|ref|YP_002829664.1|	-	0.089	12.5	0.1	0.2	11.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
DUF3987	PF13148.6	gi|227827884|ref|YP_002829664.1|	-	0.09	11.8	0.0	0.34	9.9	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
ATPase_2	PF01637.18	gi|227827884|ref|YP_002829664.1|	-	0.12	12.2	1.8	0.35	10.7	1.8	1.9	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
ABC_tran	PF00005.27	gi|227827885|ref|YP_002829665.1|	-	2e-13	51.0	0.0	4.9e-13	49.8	0.0	1.6	1	1	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227827885|ref|YP_002829665.1|	-	1.1e-12	48.4	1.1	1e-06	28.8	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227827885|ref|YP_002829665.1|	-	6.2e-10	38.9	2.1	0.00027	20.5	0.2	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|227827885|ref|YP_002829665.1|	-	6e-08	33.4	1.3	9.5e-08	32.8	1.3	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|227827885|ref|YP_002829665.1|	-	5.6e-07	28.6	1.3	0.0022	16.7	0.1	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|227827885|ref|YP_002829665.1|	-	9.9e-05	22.2	0.7	0.00016	21.5	0.7	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|227827885|ref|YP_002829665.1|	-	0.00034	20.4	0.0	0.00044	20.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227827885|ref|YP_002829665.1|	-	0.00042	20.0	0.2	0.00095	18.9	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|227827885|ref|YP_002829665.1|	-	0.00087	18.9	0.0	0.0017	18.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|227827885|ref|YP_002829665.1|	-	0.0014	18.6	2.3	0.0052	16.7	2.0	2.1	1	1	1	2	2	2	1	ATPase	domain	predominantly	from	Archaea
NTPase_1	PF03266.15	gi|227827885|ref|YP_002829665.1|	-	0.0033	17.3	0.1	0.0064	16.4	0.1	1.5	1	1	0	1	1	1	1	NTPase
AAA_33	PF13671.6	gi|227827885|ref|YP_002829665.1|	-	0.0053	16.9	0.0	0.025	14.7	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|227827885|ref|YP_002829665.1|	-	0.006	15.7	0.2	0.013	14.6	0.1	1.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
ABC_ATPase	PF09818.9	gi|227827885|ref|YP_002829665.1|	-	0.0062	15.4	0.1	0.026	13.4	0.1	1.8	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
Zeta_toxin	PF06414.12	gi|227827885|ref|YP_002829665.1|	-	0.0067	15.7	0.1	1.9	7.7	0.1	2.2	2	0	0	2	2	2	1	Zeta	toxin
Adeno_IVa2	PF02456.15	gi|227827885|ref|YP_002829665.1|	-	0.0072	15.2	1.0	0.011	14.6	0.5	1.5	2	0	0	2	2	2	1	Adenovirus	IVa2	protein
NACHT	PF05729.12	gi|227827885|ref|YP_002829665.1|	-	0.0084	16.0	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
cobW	PF02492.19	gi|227827885|ref|YP_002829665.1|	-	0.01	15.5	0.2	0.021	14.4	0.1	1.6	2	0	0	2	2	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA	PF00004.29	gi|227827885|ref|YP_002829665.1|	-	0.016	15.7	0.0	0.03	14.7	0.0	1.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|227827885|ref|YP_002829665.1|	-	0.026	15.1	0.3	0.083	13.4	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|227827885|ref|YP_002829665.1|	-	0.029	14.7	0.2	0.044	14.1	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|227827885|ref|YP_002829665.1|	-	0.035	14.4	0.1	0.046	14.0	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|227827885|ref|YP_002829665.1|	-	0.07	13.5	0.0	0.13	12.6	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|227827885|ref|YP_002829665.1|	-	0.073	13.0	0.6	0.2	11.6	0.2	1.8	2	0	0	2	2	2	0	RsgA	GTPase
AAA_14	PF13173.6	gi|227827885|ref|YP_002829665.1|	-	0.076	13.1	0.2	0.14	12.2	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|227827885|ref|YP_002829665.1|	-	0.15	12.3	0.0	0.24	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|227827885|ref|YP_002829665.1|	-	0.15	12.3	0.1	3	8.2	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
IstB_IS21	PF01695.17	gi|227827885|ref|YP_002829665.1|	-	0.18	11.5	0.3	2.7	7.7	0.1	2.2	1	1	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF3584	PF12128.8	gi|227827885|ref|YP_002829665.1|	-	0.19	9.2	0.2	0.28	8.6	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FecCD	PF01032.18	gi|227827886|ref|YP_002829666.1|	-	1.2e-68	231.4	42.5	1.5e-68	231.1	42.5	1.0	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|227827886|ref|YP_002829666.1|	-	0.0013	18.3	25.8	0.0013	18.3	25.8	1.8	2	1	0	2	2	2	1	ABC	3	transport	family
Peripla_BP_2	PF01497.18	gi|227827887|ref|YP_002829667.1|	-	1.4e-15	57.6	0.0	1.8e-15	57.1	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TatC	PF00902.18	gi|227827888|ref|YP_002829668.1|	-	2.5e-45	154.9	25.8	2.5e-45	154.9	25.8	1.3	1	1	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
Erp_C	PF06780.11	gi|227827889|ref|YP_002829669.1|	-	0.0027	17.7	1.1	0.0033	17.4	1.1	1.0	1	0	0	1	1	1	1	Erp	protein	C-terminus
DUF4407	PF14362.6	gi|227827889|ref|YP_002829669.1|	-	0.0057	16.1	0.5	0.0081	15.5	0.5	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
DUF16	PF01519.16	gi|227827889|ref|YP_002829669.1|	-	0.008	16.6	0.9	0.011	16.2	0.9	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
DUF3375	PF11855.8	gi|227827889|ref|YP_002829669.1|	-	0.0083	15.1	0.5	0.0083	15.1	0.5	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3375)
FapA	PF03961.13	gi|227827889|ref|YP_002829669.1|	-	0.01	14.5	0.8	0.012	14.3	0.8	1.0	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
FlxA	PF14282.6	gi|227827889|ref|YP_002829669.1|	-	0.011	15.7	2.0	0.014	15.4	0.7	1.7	1	1	0	1	1	1	0	FlxA-like	protein
Cob_adeno_trans	PF01923.18	gi|227827889|ref|YP_002829669.1|	-	0.015	15.4	0.7	0.023	14.8	0.5	1.5	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
bZIP_2	PF07716.15	gi|227827889|ref|YP_002829669.1|	-	0.016	15.3	3.2	0.016	15.3	3.2	2.1	2	0	0	2	2	2	0	Basic	region	leucine	zipper
Phasin	PF05597.11	gi|227827889|ref|YP_002829669.1|	-	0.019	15.0	0.3	0.022	14.7	0.3	1.1	1	0	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF4140	PF13600.6	gi|227827889|ref|YP_002829669.1|	-	0.025	15.0	1.1	0.036	14.5	1.1	1.4	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
TolA_bind_tri	PF16331.5	gi|227827889|ref|YP_002829669.1|	-	0.032	14.3	1.7	5.8	7.1	0.7	2.1	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
DUF1192	PF06698.11	gi|227827889|ref|YP_002829669.1|	-	0.033	14.2	1.4	0.033	14.2	1.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
CEP63	PF17045.5	gi|227827889|ref|YP_002829669.1|	-	0.038	13.9	3.9	0.058	13.3	3.9	1.3	1	1	0	1	1	1	0	Centrosomal	protein	of	63	kDa
DUF5082	PF16888.5	gi|227827889|ref|YP_002829669.1|	-	0.045	14.0	1.7	0.048	13.9	0.6	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
HalX	PF08663.10	gi|227827889|ref|YP_002829669.1|	-	0.05	13.9	1.7	0.14	12.5	0.8	1.9	2	0	0	2	2	2	0	HalX	domain
TMF_TATA_bd	PF12325.8	gi|227827889|ref|YP_002829669.1|	-	0.053	13.7	4.0	0.17	12.1	4.0	1.7	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
DMPK_coil	PF08826.10	gi|227827889|ref|YP_002829669.1|	-	0.056	13.6	7.3	0.22	11.7	7.3	1.9	1	1	0	1	1	1	0	DMPK	coiled	coil	domain	like
DUF1664	PF07889.12	gi|227827889|ref|YP_002829669.1|	-	0.064	13.3	0.5	0.13	12.3	0.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DivIC	PF04977.15	gi|227827889|ref|YP_002829669.1|	-	0.069	12.9	0.7	0.069	12.9	0.7	2.0	3	0	0	3	3	2	0	Septum	formation	initiator
DUF2802	PF10975.8	gi|227827889|ref|YP_002829669.1|	-	0.095	12.8	2.5	0.22	11.7	1.4	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
CtIP_N	PF10482.9	gi|227827889|ref|YP_002829669.1|	-	0.11	12.5	6.7	1.3	9.0	1.4	2.1	1	1	1	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
MttA_Hcf106	PF02416.16	gi|227827889|ref|YP_002829669.1|	-	0.13	11.6	2.3	0.24	10.7	2.3	1.7	1	1	0	1	1	1	0	mttA/Hcf106	family
DUF5320	PF17253.2	gi|227827889|ref|YP_002829669.1|	-	0.14	13.2	0.4	0.2	12.8	0.4	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5320)
DUF4446	PF14584.6	gi|227827889|ref|YP_002829669.1|	-	0.26	11.2	2.6	9	6.3	0.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
DUF5595	PF18077.1	gi|227827889|ref|YP_002829669.1|	-	0.34	11.0	4.3	0.18	11.9	2.0	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5595)
PKcGMP_CC	PF16808.5	gi|227827889|ref|YP_002829669.1|	-	0.64	9.9	6.6	0.35	10.8	3.9	1.8	2	0	0	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
TSC22	PF01166.18	gi|227827889|ref|YP_002829669.1|	-	1.3	9.4	5.7	0.88	9.9	0.7	2.1	2	0	0	2	2	2	0	TSC-22/dip/bun	family
MttA_Hcf106	PF02416.16	gi|227827890|ref|YP_002829670.1|	-	4.5e-12	45.1	2.1	8.9e-12	44.2	2.1	1.7	1	1	0	1	1	1	1	mttA/Hcf106	family
DUF4834	PF16118.5	gi|227827890|ref|YP_002829670.1|	-	0.00053	20.9	0.4	0.00067	20.6	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4834)
Blo-t-5	PF11642.8	gi|227827890|ref|YP_002829670.1|	-	0.027	14.4	2.6	0.039	13.9	2.6	1.3	1	0	0	1	1	1	0	Mite	allergen	Blo	t	5
Amj	PF10997.8	gi|227827890|ref|YP_002829670.1|	-	0.028	13.8	0.0	0.032	13.6	0.0	1.0	1	0	0	1	1	1	0	Alternate	to	MurJ
DUF5320	PF17253.2	gi|227827890|ref|YP_002829670.1|	-	0.033	15.2	1.6	0.045	14.8	1.6	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5320)
Nup54_57_C	PF18570.1	gi|227827890|ref|YP_002829670.1|	-	0.04	13.5	4.8	0.071	12.7	4.8	1.4	1	0	0	1	1	1	0	NUP57/Nup54	C-terminal	domain
HECT	PF00632.25	gi|227827890|ref|YP_002829670.1|	-	0.043	13.3	0.1	0.043	13.3	0.1	1.0	1	0	0	1	1	1	0	HECT-domain	(ubiquitin-transferase)
DUF4330	PF14221.6	gi|227827890|ref|YP_002829670.1|	-	0.07	13.3	0.0	0.079	13.2	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4330)
DUF3573	PF12097.8	gi|227827890|ref|YP_002829670.1|	-	0.24	10.2	1.0	0.25	10.1	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
DUF4140	PF13600.6	gi|227827890|ref|YP_002829670.1|	-	0.27	11.7	3.5	0.36	11.3	3.5	1.2	1	0	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4094	PF13334.6	gi|227827890|ref|YP_002829670.1|	-	0.3	11.5	4.1	0.49	10.8	4.1	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
ZnuA	PF01297.17	gi|227827890|ref|YP_002829670.1|	-	0.33	10.3	3.4	0.4	10.0	3.4	1.1	1	0	0	1	1	1	0	Zinc-uptake	complex	component	A	periplasmic
ATP-synt_G	PF04718.15	gi|227827890|ref|YP_002829670.1|	-	0.5	11.2	2.7	0.73	10.7	2.7	1.3	1	0	0	1	1	1	0	Mitochondrial	ATP	synthase	g	subunit
SlyX	PF04102.12	gi|227827890|ref|YP_002829670.1|	-	1.4	9.5	12.7	2	9.1	12.7	1.2	1	0	0	1	1	1	0	SlyX
DUF4407	PF14362.6	gi|227827890|ref|YP_002829670.1|	-	2.9	7.2	7.0	3.7	6.8	7.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Prominin	PF05478.11	gi|227827890|ref|YP_002829670.1|	-	4.3	5.2	8.9	0.63	7.9	4.8	1.5	1	1	1	2	2	2	0	Prominin
Spc24	PF08286.11	gi|227827890|ref|YP_002829670.1|	-	6.2	7.1	9.8	1.4	9.2	4.5	2.0	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
HAD_2	PF13419.6	gi|227827891|ref|YP_002829671.1|	-	3.8e-29	102.0	0.0	4.6e-29	101.8	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|227827891|ref|YP_002829671.1|	-	2.2e-14	54.2	0.6	3.6e-12	47.0	0.6	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|227827891|ref|YP_002829671.1|	-	1.4e-07	32.1	0.0	2.6e-07	31.2	0.0	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|227827891|ref|YP_002829671.1|	-	0.00012	22.1	0.0	0.00032	20.7	0.0	1.8	1	0	0	1	1	1	1	HAD-hyrolase-like
NIF	PF03031.18	gi|227827891|ref|YP_002829671.1|	-	0.0025	17.6	0.2	0.043	13.6	0.2	2.2	1	1	0	1	1	1	1	NLI	interacting	factor-like	phosphatase
Hydrolase_6	PF13344.6	gi|227827891|ref|YP_002829671.1|	-	0.0053	16.8	0.0	1.2	9.3	0.0	2.3	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|227827891|ref|YP_002829671.1|	-	0.54	10.0	2.0	2.7	7.7	0.2	2.5	2	1	2	4	4	4	0	haloacid	dehalogenase-like	hydrolase
Radical_SAM_C	PF16199.5	gi|227827892|ref|YP_002829672.1|	-	5.7e-25	87.2	0.3	1.1e-24	86.3	0.3	1.5	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Radical_SAM	PF04055.21	gi|227827892|ref|YP_002829672.1|	-	3.8e-22	79.4	0.0	7.5e-22	78.5	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.25	gi|227827892|ref|YP_002829672.1|	-	1.4e-09	38.2	0.3	3.2e-09	37.0	0.3	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|227827892|ref|YP_002829672.1|	-	1.9e-05	24.6	0.2	0.00014	21.8	0.1	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|227827892|ref|YP_002829672.1|	-	0.013	15.9	0.1	0.031	14.7	0.1	1.7	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Methyltransf_11	PF08241.12	gi|227827893|ref|YP_002829673.1|	-	1e-19	71.0	0.0	1.5e-19	70.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827893|ref|YP_002829673.1|	-	1.3e-14	54.6	0.0	1.8e-14	54.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227827893|ref|YP_002829673.1|	-	4.1e-12	46.2	0.0	5.2e-12	45.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227827893|ref|YP_002829673.1|	-	1.6e-11	44.2	0.1	2.2e-11	43.8	0.1	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227827893|ref|YP_002829673.1|	-	1.5e-07	32.1	0.1	2.3e-07	31.5	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227827893|ref|YP_002829673.1|	-	3.9e-07	29.6	0.0	6.1e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|227827893|ref|YP_002829673.1|	-	9.9e-06	25.6	0.0	1.5e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
CMAS	PF02353.20	gi|227827893|ref|YP_002829673.1|	-	0.00098	18.5	0.0	0.0013	18.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.12	gi|227827893|ref|YP_002829673.1|	-	0.0012	18.5	0.1	0.0015	18.2	0.1	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_15	PF09445.10	gi|227827893|ref|YP_002829673.1|	-	0.0048	16.5	0.1	0.0084	15.7	0.1	1.4	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_9	PF08003.11	gi|227827893|ref|YP_002829673.1|	-	0.086	11.8	0.1	0.18	10.7	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|227827893|ref|YP_002829673.1|	-	0.088	12.6	0.1	0.24	11.1	0.1	1.7	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|227827893|ref|YP_002829673.1|	-	0.29	10.7	0.6	1.5	8.3	0.6	1.9	1	1	0	1	1	1	0	Methyltransferase	small	domain
PmbA_TldD	PF01523.16	gi|227827894|ref|YP_002829674.1|	-	1.1e-16	61.5	0.1	1.5e-16	61.1	0.1	1.4	1	1	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
Radical_SAM	PF04055.21	gi|227827895|ref|YP_002829675.1|	-	2.7e-15	57.2	0.0	8.1e-15	55.6	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|227827895|ref|YP_002829675.1|	-	0.037	14.1	0.0	0.098	12.7	0.0	1.7	2	0	0	2	2	2	0	B12	binding	domain
DUF790	PF05626.11	gi|227827896|ref|YP_002829676.1|	-	2.2e-116	388.8	4.3	2.7e-116	388.5	4.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
ResIII	PF04851.15	gi|227827897|ref|YP_002829677.1|	-	2.6e-24	86.1	0.0	9.2e-24	84.4	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|227827897|ref|YP_002829677.1|	-	1.9e-19	70.0	0.1	1.7e-18	67.0	0.1	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ERCC3_RAD25_C	PF16203.5	gi|227827897|ref|YP_002829677.1|	-	1.1e-18	67.3	0.4	1.8e-18	66.6	0.4	1.3	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
DEAD	PF00270.29	gi|227827897|ref|YP_002829677.1|	-	9.4e-10	38.5	0.3	1.2e-08	34.9	0.1	2.6	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
XPB_DRD	PF18458.1	gi|227827897|ref|YP_002829677.1|	-	2.5e-07	30.5	0.0	5.7e-07	29.3	0.0	1.7	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
SNF2_N	PF00176.23	gi|227827897|ref|YP_002829677.1|	-	2.5e-06	26.4	0.1	0.00026	19.8	0.0	2.9	1	1	1	2	2	2	2	SNF2	family	N-terminal	domain
DUF1617	PF07761.12	gi|227827897|ref|YP_002829677.1|	-	0.015	15.4	0.3	0.033	14.3	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1617)
Helicase_C_2	PF13307.6	gi|227827897|ref|YP_002829677.1|	-	0.022	14.9	0.3	0.92	9.6	0.0	2.5	2	0	0	2	2	2	0	Helicase	C-terminal	domain
ADH_N	PF08240.12	gi|227827898|ref|YP_002829678.1|	-	1.1e-29	102.6	2.7	2.5e-29	101.3	0.1	2.3	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227827898|ref|YP_002829678.1|	-	1.3e-29	102.8	0.4	2.6e-29	101.9	0.4	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227827898|ref|YP_002829678.1|	-	3.4e-10	41.1	0.0	1.3e-09	39.2	0.0	1.9	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|227827898|ref|YP_002829678.1|	-	1.6e-07	31.0	1.7	3.2e-07	30.0	1.7	1.5	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
2-Hacid_dh_C	PF02826.19	gi|227827898|ref|YP_002829678.1|	-	0.012	15.0	0.2	0.031	13.7	0.3	1.5	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|227827898|ref|YP_002829678.1|	-	0.015	16.0	1.8	0.025	15.2	1.8	1.3	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
DUF131	PF01998.17	gi|227827899|ref|YP_002829679.1|	-	9.8e-15	54.0	10.1	9.8e-15	54.0	10.1	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
DUF4064	PF13273.6	gi|227827899|ref|YP_002829679.1|	-	0.0026	18.0	7.9	0.0032	17.7	7.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4064)
Phage_holin_3_6	PF07332.11	gi|227827899|ref|YP_002829679.1|	-	0.0038	17.2	4.9	0.0054	16.8	4.9	1.3	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Adeno_E3_CR2	PF02439.15	gi|227827899|ref|YP_002829679.1|	-	0.016	15.0	2.5	0.016	15.0	2.5	2.1	2	0	0	2	2	2	0	Adenovirus	E3	region	protein	CR2
DUF872	PF05915.12	gi|227827899|ref|YP_002829679.1|	-	0.016	15.4	2.7	0.016	15.4	2.7	1.9	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
SecE	PF00584.20	gi|227827899|ref|YP_002829679.1|	-	0.059	13.3	4.0	0.059	13.3	4.0	2.2	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
DUF4131	PF13567.6	gi|227827899|ref|YP_002829679.1|	-	0.1	12.3	0.3	0.1	12.3	0.3	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF2207	PF09972.9	gi|227827899|ref|YP_002829679.1|	-	0.22	10.3	8.6	0.25	10.1	8.6	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3185	PF11381.8	gi|227827899|ref|YP_002829679.1|	-	0.83	9.7	12.2	0.29	11.2	7.0	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3185)
Orf78	PF06024.12	gi|227827899|ref|YP_002829679.1|	-	0.94	9.8	3.7	0.75	10.1	1.6	1.7	2	0	0	2	2	2	0	Orf78	(ac78)
TMEM107	PF14995.6	gi|227827899|ref|YP_002829679.1|	-	4	7.9	11.4	5.5	7.5	3.0	2.2	1	1	0	2	2	2	0	Transmembrane	protein
Insulin_TMD	PF17870.1	gi|227827899|ref|YP_002829679.1|	-	4.4	7.4	12.2	0.22	11.6	5.0	2.1	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
OAD_gamma	PF04277.13	gi|227827899|ref|YP_002829679.1|	-	5	7.8	10.2	4.3	8.0	3.8	2.3	3	0	0	3	3	2	0	Oxaloacetate	decarboxylase,	gamma	chain
DUF2070	PF09843.9	gi|227827899|ref|YP_002829679.1|	-	6.2	5.0	8.2	6.7	4.9	8.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Glycophorin_A	PF01102.18	gi|227827899|ref|YP_002829679.1|	-	6.8	7.0	5.7	1.6	9.0	2.3	1.7	2	0	0	2	2	2	0	Glycophorin	A
DUF87	PF01935.17	gi|227827902|ref|YP_002829682.1|	-	2.7e-19	70.2	0.9	2.7e-19	70.2	0.9	2.0	1	1	1	2	2	2	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|227827902|ref|YP_002829682.1|	-	0.0058	16.9	0.4	2	8.7	0.1	3.2	3	1	0	3	3	3	1	AAA	domain
AAA	PF00004.29	gi|227827902|ref|YP_002829682.1|	-	0.011	16.1	0.1	1.6	9.1	0.0	3.1	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SWI2_SNF2	PF18766.1	gi|227827902|ref|YP_002829682.1|	-	0.013	15.2	0.0	3	7.4	0.0	2.3	2	0	0	2	2	2	0	SWI2/SNF2	ATPase
AAA_14	PF13173.6	gi|227827902|ref|YP_002829682.1|	-	0.027	14.5	4.1	9.2	6.3	0.0	3.8	4	0	0	4	4	4	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|227827902|ref|YP_002829682.1|	-	0.19	11.1	0.0	0.83	9.0	0.0	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
NurA	PF09376.10	gi|227827903|ref|YP_002829683.1|	-	2.5e-08	33.9	0.8	3.5e-06	26.9	0.0	2.2	1	1	1	2	2	2	2	NurA	domain
ThiP_synth	PF10120.9	gi|227827904|ref|YP_002829684.1|	-	1.6e-50	170.9	0.2	2.1e-50	170.5	0.2	1.1	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|227827904|ref|YP_002829684.1|	-	0.0028	17.7	0.6	0.035	14.1	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix
HTH_37	PF13744.6	gi|227827904|ref|YP_002829684.1|	-	0.0038	17.2	0.1	0.01	15.8	0.1	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|227827904|ref|YP_002829684.1|	-	0.012	15.4	0.0	0.099	12.5	0.0	2.3	2	1	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
DUF1864	PF08933.11	gi|227827904|ref|YP_002829684.1|	-	0.013	14.3	0.1	0.021	13.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1864)
HTH_24	PF13412.6	gi|227827904|ref|YP_002829684.1|	-	0.014	14.9	0.0	0.16	11.5	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MoCF_biosynth	PF00994.24	gi|227827904|ref|YP_002829684.1|	-	0.016	14.9	0.1	0.052	13.2	0.1	1.8	2	0	0	2	2	2	0	Probable	molybdopterin	binding	domain
HTH_Crp_2	PF13545.6	gi|227827904|ref|YP_002829684.1|	-	0.02	14.8	0.1	0.18	11.8	0.0	2.4	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
MerR-DNA-bind	PF09278.11	gi|227827904|ref|YP_002829684.1|	-	0.028	14.9	0.1	0.29	11.7	0.0	2.4	2	0	0	2	2	2	0	MerR,	DNA	binding
P22_Cro	PF14549.6	gi|227827904|ref|YP_002829684.1|	-	0.054	13.4	0.0	0.2	11.5	0.0	1.9	2	0	0	2	2	2	0	DNA-binding	transcriptional	regulator	Cro
Phage_TAC_7	PF10109.9	gi|227827904|ref|YP_002829684.1|	-	0.059	13.5	0.2	0.64	10.2	0.0	2.3	2	0	0	2	2	2	0	Phage	tail	assembly	chaperone	proteins,	E,	or	41	or	14
RepB	PF07506.11	gi|227827904|ref|YP_002829684.1|	-	0.064	13.3	0.0	0.93	9.6	0.0	2.3	1	1	1	2	2	2	0	RepB	plasmid	partitioning	protein
Sigma70_r4_2	PF08281.12	gi|227827904|ref|YP_002829684.1|	-	0.065	12.9	0.0	0.19	11.4	0.0	1.8	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|227827904|ref|YP_002829684.1|	-	0.11	11.9	0.0	0.22	11.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Ribosomal_60s	PF00428.19	gi|227827904|ref|YP_002829684.1|	-	0.13	12.8	0.5	0.35	11.5	0.1	1.9	2	0	0	2	2	2	0	60s	Acidic	ribosomal	protein
MMPL	PF03176.15	gi|227827905|ref|YP_002829685.1|	-	5.1e-50	170.3	18.8	3.3e-28	98.6	6.6	2.1	2	0	0	2	2	2	2	MMPL	family
EMG1	PF03587.14	gi|227827905|ref|YP_002829685.1|	-	0.008	15.9	0.5	0.019	14.7	0.5	1.5	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
DUF5392	PF17370.2	gi|227827905|ref|YP_002829685.1|	-	8.7	6.4	9.2	0.87	9.7	3.0	2.5	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5392)
Sterol-sensing	PF12349.8	gi|227827905|ref|YP_002829685.1|	-	9	6.1	19.0	0.067	13.0	5.7	3.2	3	1	0	3	3	3	0	Sterol-sensing	domain	of	SREBP	cleavage-activation
Med10	PF09748.9	gi|227827906|ref|YP_002829686.1|	-	0.06	13.3	0.3	0.069	13.1	0.3	1.1	1	0	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
Peptidase_M50	PF02163.22	gi|227827908|ref|YP_002829688.1|	-	1.5e-06	27.7	10.2	0.00072	18.9	0.7	3.2	1	1	1	2	2	2	2	Peptidase	family	M50
CRCB	PF02537.15	gi|227827908|ref|YP_002829688.1|	-	2.3	8.6	10.9	1.3	9.4	8.4	2.1	2	1	0	2	2	2	0	CrcB-like	protein,	Camphor	Resistance	(CrcB)
Rhomboid	PF01694.22	gi|227827909|ref|YP_002829689.1|	-	4e-16	59.4	14.6	4e-16	59.4	14.6	2.1	2	0	0	2	2	2	1	Rhomboid	family
DUF1751	PF08551.10	gi|227827909|ref|YP_002829689.1|	-	3.9	8.1	13.2	0.055	14.0	2.2	2.9	2	1	1	3	3	3	0	Eukaryotic	integral	membrane	protein	(DUF1751)
DUF805	PF05656.14	gi|227827909|ref|YP_002829689.1|	-	8.7	6.8	9.8	0.53	10.7	0.6	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF805)
AAA_18	PF13238.6	gi|227827911|ref|YP_002829691.1|	-	6.5e-19	68.8	0.0	1e-18	68.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|227827911|ref|YP_002829691.1|	-	1.9e-06	28.3	0.1	2.6e-05	24.7	0.0	2.1	1	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|227827911|ref|YP_002829691.1|	-	3.2e-05	24.0	0.0	0.00015	21.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|227827911|ref|YP_002829691.1|	-	0.00013	22.4	0.2	0.00096	19.6	0.0	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|227827911|ref|YP_002829691.1|	-	0.00055	19.9	2.0	0.0093	15.9	0.1	2.9	1	1	2	3	3	3	1	NTPase
KTI12	PF08433.10	gi|227827911|ref|YP_002829691.1|	-	0.00061	19.3	0.6	0.0039	16.7	0.1	2.1	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_22	PF13401.6	gi|227827911|ref|YP_002829691.1|	-	0.0014	18.9	0.2	0.0035	17.6	0.1	1.8	2	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|227827911|ref|YP_002829691.1|	-	0.0037	17.4	0.0	0.0051	17.0	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|227827911|ref|YP_002829691.1|	-	0.0061	15.8	0.0	0.0066	15.7	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Hydin_ADK	PF17213.3	gi|227827911|ref|YP_002829691.1|	-	0.021	15.1	0.0	0.043	14.1	0.0	1.5	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
AAA_28	PF13521.6	gi|227827911|ref|YP_002829691.1|	-	0.021	15.1	0.1	0.047	13.9	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|227827911|ref|YP_002829691.1|	-	0.025	14.6	0.2	0.072	13.1	0.2	1.7	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|227827911|ref|YP_002829691.1|	-	0.025	15.0	0.0	0.062	13.7	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
AAA_16	PF13191.6	gi|227827911|ref|YP_002829691.1|	-	0.038	14.4	0.0	0.082	13.3	0.0	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
Cytidylate_kin	PF02224.18	gi|227827911|ref|YP_002829691.1|	-	0.04	13.6	0.4	8.9	6.0	0.1	2.3	2	1	0	2	2	2	0	Cytidylate	kinase
AAA_3	PF07726.11	gi|227827911|ref|YP_002829691.1|	-	0.041	13.7	0.0	0.082	12.8	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SKI	PF01202.22	gi|227827911|ref|YP_002829691.1|	-	0.056	13.6	0.2	0.26	11.4	0.2	2.0	1	1	0	1	1	1	0	Shikimate	kinase
NACHT	PF05729.12	gi|227827911|ref|YP_002829691.1|	-	0.059	13.3	0.0	0.16	11.8	0.0	1.7	1	1	0	2	2	2	0	NACHT	domain
PIN_12	PF16289.5	gi|227827911|ref|YP_002829691.1|	-	0.067	13.7	0.6	0.067	13.7	0.6	2.0	1	1	1	2	2	2	0	PIN	domain
AAA_26	PF13500.6	gi|227827911|ref|YP_002829691.1|	-	0.074	12.9	2.5	0.56	10.0	2.5	2.1	1	1	0	1	1	1	0	AAA	domain
DnaB_C	PF03796.15	gi|227827911|ref|YP_002829691.1|	-	0.087	12.1	0.2	4.1	6.7	0.0	2.4	1	1	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
AAA_2	PF07724.14	gi|227827911|ref|YP_002829691.1|	-	0.13	12.4	1.1	1.1	9.4	0.0	2.3	2	1	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
ATPase	PF06745.13	gi|227827911|ref|YP_002829691.1|	-	0.18	11.1	3.9	4.3	6.6	0.1	2.4	1	1	1	2	2	2	0	KaiC
ATP_bind_2	PF03668.15	gi|227827911|ref|YP_002829691.1|	-	0.23	10.7	1.6	2.1	7.6	0.1	2.7	2	1	0	3	3	3	0	P-loop	ATPase	protein	family
ParA	PF10609.9	gi|227827912|ref|YP_002829692.1|	-	1.3e-98	329.4	0.2	1.5e-98	329.2	0.2	1.0	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|227827912|ref|YP_002829692.1|	-	1.5e-12	47.7	0.0	6.2e-11	42.5	0.0	2.9	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.18	gi|227827912|ref|YP_002829692.1|	-	1.5e-09	37.7	0.1	5.9e-05	22.6	0.3	2.4	2	1	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_31	PF13614.6	gi|227827912|ref|YP_002829692.1|	-	1.7e-09	37.8	0.3	2.5e-06	27.5	0.2	2.4	2	0	0	2	2	2	2	AAA	domain
MipZ	PF09140.11	gi|227827912|ref|YP_002829692.1|	-	1.1e-05	24.9	0.0	2e-05	24.0	0.0	1.4	1	1	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|227827912|ref|YP_002829692.1|	-	6.2e-05	22.3	3.4	0.00015	21.0	1.2	2.2	2	1	0	2	2	2	1	Anion-transporting	ATPase
MeaB	PF03308.16	gi|227827912|ref|YP_002829692.1|	-	0.00088	18.3	0.3	0.0015	17.6	0.3	1.3	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_25	PF13481.6	gi|227827912|ref|YP_002829692.1|	-	0.0018	17.9	0.0	0.0053	16.3	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_26	PF13500.6	gi|227827912|ref|YP_002829692.1|	-	0.008	16.0	1.1	2.6	7.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
DsrD	PF08679.11	gi|227827913|ref|YP_002829693.1|	-	0.039	14.2	0.6	0.058	13.7	0.1	1.6	2	0	0	2	2	2	0	Dissimilatory	sulfite	reductase	D	(DsrD)
TrmB	PF01978.19	gi|227827914|ref|YP_002829694.1|	-	3e-13	49.5	0.1	5.4e-13	48.6	0.1	1.5	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|227827914|ref|YP_002829694.1|	-	5.6e-07	29.3	0.0	8.8e-07	28.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.17	gi|227827914|ref|YP_002829694.1|	-	5.7e-05	22.9	0.1	6.6e-05	22.7	0.1	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR	PF01047.22	gi|227827914|ref|YP_002829694.1|	-	0.00011	22.0	0.0	0.00021	21.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|227827914|ref|YP_002829694.1|	-	0.00026	20.8	0.0	0.00052	19.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|227827914|ref|YP_002829694.1|	-	0.00028	20.9	0.0	0.0005	20.1	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227827914|ref|YP_002829694.1|	-	0.00042	20.5	0.1	0.00082	19.5	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|227827914|ref|YP_002829694.1|	-	0.0017	17.9	0.1	0.0034	16.9	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|227827914|ref|YP_002829694.1|	-	0.003	17.5	0.1	0.0043	17.0	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|227827914|ref|YP_002829694.1|	-	0.004	17.6	0.0	0.0067	16.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|227827914|ref|YP_002829694.1|	-	0.008	16.3	0.1	0.012	15.8	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|227827914|ref|YP_002829694.1|	-	0.01	16.2	0.0	0.017	15.5	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
DUF2250	PF10007.9	gi|227827914|ref|YP_002829694.1|	-	0.01	15.9	0.2	0.022	14.8	0.2	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_Crp_2	PF13545.6	gi|227827914|ref|YP_002829694.1|	-	0.011	15.6	0.0	0.024	14.6	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|227827914|ref|YP_002829694.1|	-	0.016	15.1	0.8	0.033	14.1	0.1	1.9	2	1	0	2	2	2	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|227827914|ref|YP_002829694.1|	-	0.027	14.2	0.1	0.061	13.0	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_23	PF13384.6	gi|227827914|ref|YP_002829694.1|	-	0.031	14.1	0.0	0.069	13.0	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|227827914|ref|YP_002829694.1|	-	0.033	14.0	0.0	0.048	13.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|227827914|ref|YP_002829694.1|	-	0.05	13.2	0.1	0.073	12.6	0.1	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
SgrR_N	PF12793.7	gi|227827914|ref|YP_002829694.1|	-	0.067	13.4	0.0	0.083	13.1	0.0	1.1	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
TnsD	PF15978.5	gi|227827914|ref|YP_002829694.1|	-	0.076	12.0	0.1	0.091	11.7	0.1	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
5-FTHF_cyc-lig	PF01812.20	gi|227827915|ref|YP_002829695.1|	-	2e-36	125.6	0.0	2.5e-36	125.3	0.0	1.1	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
LysE	PF01810.18	gi|227827916|ref|YP_002829696.1|	-	8.4e-14	51.5	14.6	1.4e-13	50.8	14.6	1.4	1	0	0	1	1	1	1	LysE	type	translocator
DPM3	PF08285.11	gi|227827916|ref|YP_002829696.1|	-	0.26	11.5	5.4	0.19	11.9	3.2	1.9	2	0	0	2	2	2	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
DUF72	PF01904.18	gi|227827917|ref|YP_002829697.1|	-	1.2e-25	91.0	1.7	1.5e-25	90.6	1.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
HTH_7	PF02796.15	gi|227827918|ref|YP_002829698.1|	-	2.1e-16	59.7	8.0	0.00012	22.0	0.3	3.2	3	0	0	3	3	3	3	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.6	gi|227827918|ref|YP_002829698.1|	-	2.3e-14	52.7	0.1	2.2e-05	24.1	0.0	3.2	2	1	0	3	3	3	3	Homeodomain-like	domain
HTH_38	PF13936.6	gi|227827918|ref|YP_002829698.1|	-	4.1e-13	48.9	6.8	2.8e-05	23.8	0.9	3.2	3	0	0	3	3	3	3	Helix-turn-helix	domain
GcrA	PF07750.11	gi|227827918|ref|YP_002829698.1|	-	1.3e-10	41.9	0.3	0.00032	21.1	0.1	3.0	1	1	1	3	3	3	2	GcrA	cell	cycle	regulator
GerE	PF00196.19	gi|227827918|ref|YP_002829698.1|	-	1.7e-09	37.1	2.9	0.018	14.6	0.1	3.2	3	0	0	3	3	3	3	Bacterial	regulatory	proteins,	luxR	family
HTH_40	PF14493.6	gi|227827918|ref|YP_002829698.1|	-	2.7e-09	37.3	1.2	0.00083	19.8	0.1	3.2	1	1	2	3	3	3	2	Helix-turn-helix	domain
TnsD	PF15978.5	gi|227827918|ref|YP_002829698.1|	-	1.1e-08	34.5	3.9	0.0082	15.2	0.2	3.0	1	1	2	3	3	3	3	Tn7-like	transposition	protein	D
HTH_28	PF13518.6	gi|227827918|ref|YP_002829698.1|	-	1.9e-07	31.1	0.0	0.17	12.1	0.0	3.1	3	0	0	3	3	3	2	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|227827918|ref|YP_002829698.1|	-	3.2e-07	29.8	0.0	0.14	11.7	0.0	3.3	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|227827918|ref|YP_002829698.1|	-	3.3e-07	29.9	0.8	0.001	18.7	0.1	3.2	3	0	0	3	3	3	1	Sigma-70,	region	4
Recombinase	PF07508.13	gi|227827918|ref|YP_002829698.1|	-	1.8e-06	28.3	6.4	0.038	14.4	0.1	3.8	2	1	1	3	3	3	2	Recombinase
HTH_Tnp_1	PF01527.20	gi|227827918|ref|YP_002829698.1|	-	3e-06	27.5	0.7	0.08	13.3	0.1	3.0	2	1	1	3	3	3	2	Transposase
HTH_29	PF13551.6	gi|227827918|ref|YP_002829698.1|	-	3e-06	27.2	0.1	0.0044	17.0	0.0	3.1	2	1	1	3	3	3	1	Winged	helix-turn	helix
Sigma70_r4	PF04545.16	gi|227827918|ref|YP_002829698.1|	-	7e-06	25.5	2.6	0.00048	19.6	0.7	2.8	3	0	0	3	3	3	1	Sigma-70,	region	4
Terminase_5	PF06056.12	gi|227827918|ref|YP_002829698.1|	-	9.4e-06	25.4	0.3	0.12	12.3	0.0	3.2	2	1	0	3	3	3	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_Tnp_ISL3	PF13542.6	gi|227827918|ref|YP_002829698.1|	-	1e-05	24.8	0.0	0.049	13.1	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_11	PF08279.12	gi|227827918|ref|YP_002829698.1|	-	1.7e-05	24.7	1.8	0.73	9.8	0.0	3.2	3	0	0	3	3	3	1	HTH	domain
IF2_N	PF04760.15	gi|227827918|ref|YP_002829698.1|	-	1.8e-05	24.5	7.1	0.018	14.9	0.1	4.2	1	1	2	4	4	4	2	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_6	PF01418.17	gi|227827918|ref|YP_002829698.1|	-	1.8e-05	24.6	0.2	0.78	9.8	0.0	3.2	2	1	1	3	3	3	2	Helix-turn-helix	domain,	rpiR	family
HTH_10	PF04967.12	gi|227827918|ref|YP_002829698.1|	-	2.5e-05	24.0	0.1	0.064	13.1	0.0	3.2	3	0	0	3	3	3	1	HTH	DNA	binding	domain
Phage_antitermQ	PF06530.12	gi|227827918|ref|YP_002829698.1|	-	7.3e-05	22.7	3.9	0.022	14.7	0.2	2.5	1	1	0	2	2	2	2	Phage	antitermination	protein	Q
HTH_50	PF18024.1	gi|227827918|ref|YP_002829698.1|	-	0.00011	21.8	1.6	0.59	9.8	0.0	3.1	3	0	0	3	3	3	2	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|227827918|ref|YP_002829698.1|	-	0.00011	22.2	4.7	0.00011	22.2	4.7	1.7	1	1	1	2	2	2	1	Transposase
Phage_terminase	PF10668.9	gi|227827918|ref|YP_002829698.1|	-	0.00021	21.3	2.3	0.64	10.1	0.0	3.0	2	1	1	3	3	3	2	Phage	terminase	small	subunit
HTH_5	PF01022.20	gi|227827918|ref|YP_002829698.1|	-	0.00027	20.7	0.0	1.2	9.0	0.0	2.7	3	0	0	3	3	2	2	Bacterial	regulatory	protein,	arsR	family
Sigma70_ECF	PF07638.11	gi|227827918|ref|YP_002829698.1|	-	0.00029	20.8	0.5	0.13	12.1	0.1	2.9	1	1	2	3	3	3	1	ECF	sigma	factor
PAX	PF00292.18	gi|227827918|ref|YP_002829698.1|	-	0.0003	20.7	0.2	0.0087	16.0	0.0	2.5	1	1	2	3	3	3	1	'Paired	box'	domain
HTH_Tnp_IS1	PF12759.7	gi|227827918|ref|YP_002829698.1|	-	0.00052	19.6	0.2	0.021	14.4	0.0	2.5	3	0	0	3	3	2	1	InsA	C-terminal	domain
RPA_C	PF08784.11	gi|227827918|ref|YP_002829698.1|	-	0.0011	19.6	0.1	0.49	11.1	0.0	3.0	1	1	2	3	3	3	1	Replication	protein	A	C	terminal
HTH_25	PF13413.6	gi|227827918|ref|YP_002829698.1|	-	0.0022	17.8	0.3	6.7	6.7	0.0	3.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|227827918|ref|YP_002829698.1|	-	0.0026	17.8	4.0	7.6	6.7	0.3	3.3	2	1	1	3	3	3	0	Helix-turn-helix
NUMOD1	PF07453.13	gi|227827918|ref|YP_002829698.1|	-	0.0029	17.8	3.4	1	9.7	0.3	3.3	3	0	0	3	3	3	1	NUMOD1	domain
DUF3791	PF12668.7	gi|227827918|ref|YP_002829698.1|	-	0.0037	17.3	6.0	2.9	8.0	0.1	3.8	4	0	0	4	4	4	1	Protein	of	unknown	function	(DUF3791)
CENP-B_N	PF04218.13	gi|227827918|ref|YP_002829698.1|	-	0.0042	16.7	8.9	0.62	9.7	0.1	3.2	3	0	0	3	3	3	1	CENP-B	N-terminal	DNA-binding	domain
DUF2802	PF10975.8	gi|227827918|ref|YP_002829698.1|	-	0.0089	16.1	0.0	3.4	7.9	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2802)
TrmB	PF01978.19	gi|227827918|ref|YP_002829698.1|	-	0.012	15.5	0.5	4.8	7.2	0.0	3.6	3	1	1	4	4	4	0	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r3	PF04539.16	gi|227827918|ref|YP_002829698.1|	-	0.018	15.1	0.5	4.2	7.5	0.1	3.3	3	1	0	3	3	3	0	Sigma-70	region	3
HTH_30	PF13556.6	gi|227827918|ref|YP_002829698.1|	-	0.018	14.8	0.0	5.5	6.9	0.0	3.1	3	0	0	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
DUF1699	PF08004.11	gi|227827918|ref|YP_002829698.1|	-	0.02	14.5	8.2	1.7	8.3	0.3	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1699)
HTH_IclR	PF09339.10	gi|227827918|ref|YP_002829698.1|	-	0.026	14.3	0.0	0.063	13.1	0.0	1.6	2	0	0	2	2	1	0	IclR	helix-turn-helix	domain
HTH_AraC	PF00165.23	gi|227827918|ref|YP_002829698.1|	-	0.033	14.3	0.0	4.3	7.6	0.0	2.8	3	0	0	3	3	3	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
Ribosomal_S13	PF00416.22	gi|227827918|ref|YP_002829698.1|	-	0.034	14.6	2.8	0.044	14.2	1.5	1.8	1	1	1	2	2	2	0	Ribosomal	protein	S13/S18
Homeodomain	PF00046.29	gi|227827918|ref|YP_002829698.1|	-	0.038	13.8	1.7	9.3	6.2	0.0	3.4	2	1	2	4	4	4	0	Homeodomain
Rep_fac_C	PF08542.11	gi|227827918|ref|YP_002829698.1|	-	0.054	13.9	0.8	2.3	8.7	0.1	2.8	2	1	1	3	3	3	0	Replication	factor	C	C-terminal	domain
Cadherin_2	PF08266.12	gi|227827918|ref|YP_002829698.1|	-	0.056	13.3	0.2	3.7	7.5	0.0	2.9	2	1	0	3	3	3	0	Cadherin-like
DUF2316	PF10078.9	gi|227827918|ref|YP_002829698.1|	-	0.061	13.6	0.1	17	5.7	0.0	3.1	1	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
HTH_AsnC-type	PF13404.6	gi|227827918|ref|YP_002829698.1|	-	0.073	12.9	0.0	3.5	7.5	0.0	3.2	4	0	0	4	4	4	0	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|227827918|ref|YP_002829698.1|	-	0.073	13.0	0.0	9.2	6.3	0.0	2.6	3	0	0	3	3	2	0	MarR	family
Cpn60_TCP1	PF00118.24	gi|227827918|ref|YP_002829698.1|	-	0.075	11.6	0.7	0.089	11.4	0.7	1.1	1	0	0	1	1	1	0	TCP-1/cpn60	chaperonin	family
ANT	PF03374.14	gi|227827918|ref|YP_002829698.1|	-	0.081	13.2	0.1	2.2	8.7	0.0	2.3	2	1	0	2	2	2	0	Phage	antirepressor	protein	KilAC	domain
Trp_repressor	PF01371.19	gi|227827918|ref|YP_002829698.1|	-	0.081	13.1	2.3	5.8	7.1	0.1	3.0	2	1	1	3	3	3	0	Trp	repressor	protein
Ribosomal_S13_N	PF08069.12	gi|227827918|ref|YP_002829698.1|	-	0.094	12.8	0.9	9	6.4	0.1	2.8	2	0	0	2	2	2	0	Ribosomal	S13/S15	N-terminal	domain
DUF4314	PF14192.6	gi|227827918|ref|YP_002829698.1|	-	0.095	12.6	0.6	9.8	6.2	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4314)
HTH_17	PF12728.7	gi|227827918|ref|YP_002829698.1|	-	0.1	12.8	0.9	6.6	7.0	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
Mga	PF05043.13	gi|227827918|ref|YP_002829698.1|	-	0.12	12.9	3.1	8.9	7.0	0.1	2.9	2	1	1	3	3	3	0	Mga	helix-turn-helix	domain
HTH_22	PF13309.6	gi|227827918|ref|YP_002829698.1|	-	0.2	11.7	3.3	25	5.1	0.2	3.8	2	2	1	3	3	3	0	HTH	domain
MerR_1	PF13411.6	gi|227827918|ref|YP_002829698.1|	-	0.22	11.6	5.9	8.8	6.5	0.1	3.8	4	0	0	4	4	4	0	MerR	HTH	family	regulatory	protein
DUF2089	PF09862.9	gi|227827918|ref|YP_002829698.1|	-	0.47	10.5	3.9	5.2	7.1	0.1	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2089)
tRNA-synt_1b	PF00579.25	gi|227827919|ref|YP_002829699.1|	-	8e-26	91.0	0.0	1.3e-25	90.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Snf7	PF03357.21	gi|227827920|ref|YP_002829700.1|	-	0.00055	19.6	0.1	0.00064	19.4	0.1	1.3	1	0	0	1	1	1	1	Snf7
LOH1CR12	PF10158.9	gi|227827920|ref|YP_002829700.1|	-	0.0038	17.2	0.5	0.0071	16.4	0.5	1.5	1	0	0	1	1	1	1	Tumour	suppressor	protein
tRNA-synt_2c	PF01411.19	gi|227827921|ref|YP_002829701.1|	-	5.5e-14	51.6	0.1	7.9e-14	51.1	0.1	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|227827921|ref|YP_002829701.1|	-	1e-12	47.9	0.3	3.6e-12	46.2	0.1	2.0	2	0	0	2	2	2	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DPM2	PF07297.12	gi|227827921|ref|YP_002829701.1|	-	0.16	12.3	0.0	0.34	11.2	0.0	1.5	1	0	0	1	1	1	0	Dolichol	phosphate-mannose	biosynthesis	regulatory	protein	(DPM2)
GtrA	PF04138.14	gi|227827922|ref|YP_002829702.1|	-	3.8e-22	78.7	14.4	5.5e-22	78.2	14.4	1.2	1	0	0	1	1	1	1	GtrA-like	protein
Aminotran_1_2	PF00155.21	gi|227827923|ref|YP_002829703.1|	-	1.4e-14	54.0	0.0	8e-14	51.6	0.0	1.9	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
FATC	PF02260.20	gi|227827923|ref|YP_002829703.1|	-	0.12	12.2	0.0	1.6	8.7	0.0	2.4	2	0	0	2	2	2	0	FATC	domain
HTH_10	PF04967.12	gi|227827924|ref|YP_002829704.1|	-	1.4e-21	76.0	0.0	2.4e-21	75.3	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.6	gi|227827924|ref|YP_002829704.1|	-	0.00011	21.7	0.4	0.00038	20.0	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Mga	PF08280.11	gi|227827924|ref|YP_002829704.1|	-	0.0012	18.9	0.0	0.012	15.7	0.0	2.3	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
TFIIE_alpha	PF02002.17	gi|227827924|ref|YP_002829704.1|	-	0.0012	18.7	1.1	0.0049	16.7	0.3	2.1	2	0	0	2	2	2	1	TFIIE	alpha	subunit
MarR	PF01047.22	gi|227827924|ref|YP_002829704.1|	-	0.0015	18.4	0.0	0.0039	17.1	0.0	1.7	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|227827924|ref|YP_002829704.1|	-	0.0039	17.4	0.0	0.0076	16.4	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_3	PF01381.22	gi|227827924|ref|YP_002829704.1|	-	0.0052	16.8	0.0	0.012	15.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
MarR_2	PF12802.7	gi|227827924|ref|YP_002829704.1|	-	0.0072	16.2	0.1	0.014	15.3	0.1	1.6	1	1	0	1	1	1	1	MarR	family
DUF4470	PF14737.6	gi|227827924|ref|YP_002829704.1|	-	0.13	12.4	0.0	0.21	11.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4470)
HTH_18	PF12833.7	gi|227827924|ref|YP_002829704.1|	-	0.14	12.4	0.0	7.6	6.9	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
TFIIB	PF00382.19	gi|227827925|ref|YP_002829705.1|	-	5.2e-38	128.9	4.8	1.1e-18	67.0	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|227827925|ref|YP_002829705.1|	-	7.2e-11	41.4	0.1	1.3e-10	40.6	0.1	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_AsnC-type	PF13404.6	gi|227827925|ref|YP_002829705.1|	-	6.5e-06	25.9	0.1	0.00013	21.7	0.1	2.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|227827925|ref|YP_002829705.1|	-	2.2e-05	23.9	1.0	0.00049	19.6	0.3	3.2	3	0	0	3	3	3	1	Sigma-70,	region	4
Cyclin_C	PF02984.19	gi|227827925|ref|YP_002829705.1|	-	3.7e-05	23.8	0.0	0.094	12.8	0.0	2.2	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
HTH_Tnp_ISL3	PF13542.6	gi|227827925|ref|YP_002829705.1|	-	0.0002	20.7	0.2	0.01	15.2	0.0	3.2	3	1	1	4	4	4	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.12	gi|227827925|ref|YP_002829705.1|	-	0.00055	19.6	0.2	0.0095	15.6	0.0	2.8	2	0	0	2	2	2	1	Sigma-70,	region	4
DUF3562	PF12085.8	gi|227827925|ref|YP_002829705.1|	-	0.0055	16.3	0.6	1.4	8.6	0.1	2.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3562)
HTH_24	PF13412.6	gi|227827925|ref|YP_002829705.1|	-	0.01	15.4	0.4	0.051	13.2	0.1	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|227827925|ref|YP_002829705.1|	-	0.013	15.4	0.3	0.038	13.9	0.1	1.9	2	0	0	2	2	1	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|227827925|ref|YP_002829705.1|	-	0.021	14.8	2.4	0.81	9.7	0.0	3.0	3	0	0	3	3	3	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|227827925|ref|YP_002829705.1|	-	0.026	14.3	0.1	0.026	14.3	0.1	3.2	3	0	0	3	3	3	0	Homeodomain-like	domain
RB_B	PF01857.20	gi|227827925|ref|YP_002829705.1|	-	0.033	14.2	0.1	0.08	13.0	0.1	1.6	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Cyclin_N	PF00134.23	gi|227827925|ref|YP_002829705.1|	-	0.059	13.1	0.3	1.7	8.4	0.2	2.2	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
HU-CCDC81_euk_2	PF18289.1	gi|227827925|ref|YP_002829705.1|	-	0.17	12.1	0.1	5.1	7.3	0.0	2.3	2	0	0	2	2	2	0	CCDC81	eukaryotic	HU	domain	2
UPF0253	PF06786.12	gi|227827925|ref|YP_002829705.1|	-	0.24	11.7	1.6	0.55	10.5	0.0	2.4	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0253)
SUI1	PF01253.22	gi|227827926|ref|YP_002829706.1|	-	4.6e-21	75.1	1.5	5.7e-21	74.8	1.5	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|227827926|ref|YP_002829706.1|	-	0.0015	18.8	0.9	0.002	18.4	0.9	1.3	1	0	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
P-mevalo_kinase	PF04275.14	gi|227827926|ref|YP_002829706.1|	-	0.0056	16.6	0.1	0.0084	16.0	0.1	1.3	1	1	0	1	1	1	1	Phosphomevalonate	kinase
DNA_RNApol_7kD	PF03604.13	gi|227827927|ref|YP_002829707.1|	-	9.2e-06	25.2	2.5	1.9e-05	24.3	2.5	1.5	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF2072	PF09845.9	gi|227827927|ref|YP_002829707.1|	-	0.00058	20.1	0.4	0.00062	20.0	0.4	1.0	1	0	0	1	1	1	1	Zn-ribbon	containing	protein
zf-C2H2	PF00096.26	gi|227827927|ref|YP_002829707.1|	-	0.0017	18.7	3.5	0.1	13.1	0.3	2.1	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
Zn-ribbon_8	PF09723.10	gi|227827927|ref|YP_002829707.1|	-	0.0023	18.0	0.3	0.0032	17.5	0.3	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|227827927|ref|YP_002829707.1|	-	0.015	15.3	0.1	0.015	15.3	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Baculo_IE-1	PF05290.11	gi|227827927|ref|YP_002829707.1|	-	0.021	14.8	0.4	0.022	14.7	0.4	1.1	1	0	0	1	1	1	0	Baculovirus	immediate-early	protein	(IE-0)
zinc_ribbon_4	PF13717.6	gi|227827927|ref|YP_002829707.1|	-	0.045	13.7	1.6	4.6	7.2	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|227827927|ref|YP_002829707.1|	-	0.047	13.7	1.8	0.28	11.2	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|227827927|ref|YP_002829707.1|	-	0.049	13.4	3.2	3.1	7.6	0.5	2.3	1	1	2	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|227827927|ref|YP_002829707.1|	-	0.093	12.2	0.7	0.093	12.2	0.7	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227827927|ref|YP_002829707.1|	-	0.15	11.8	0.4	0.15	11.8	0.4	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|227827927|ref|YP_002829707.1|	-	0.21	12.1	2.9	2.1	8.9	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-BED	PF02892.15	gi|227827927|ref|YP_002829707.1|	-	0.64	10.1	3.8	6.6	6.8	0.2	2.1	1	1	1	2	2	2	0	BED	zinc	finger
Arginase	PF00491.21	gi|227827928|ref|YP_002829708.1|	-	4.6e-75	252.7	0.0	5.2e-75	252.5	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
HGTP_anticodon	PF03129.20	gi|227827929|ref|YP_002829709.1|	-	1e-19	70.5	0.1	2.8e-19	69.0	0.1	1.8	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|227827929|ref|YP_002829709.1|	-	3.1e-07	30.5	1.1	2.1e-06	27.8	0.1	2.6	3	0	0	3	3	3	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zf-RING_7	PF02591.15	gi|227827929|ref|YP_002829709.1|	-	0.056	13.6	1.1	10	6.4	0.1	2.8	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-BED	PF02892.15	gi|227827929|ref|YP_002829709.1|	-	0.18	11.8	0.1	5.1	7.2	0.0	2.5	2	0	0	2	2	2	0	BED	zinc	finger
DNA_RNApol_7kD	PF03604.13	gi|227827929|ref|YP_002829709.1|	-	2.6	7.8	4.7	0.41	10.4	0.4	1.9	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Molydop_binding	PF01568.21	gi|227827930|ref|YP_002829710.1|	-	7.1e-06	26.0	0.1	0.078	13.0	0.0	2.1	1	1	1	2	2	2	2	Molydopterin	dinucleotide	binding	domain
CDC48_N	PF02359.18	gi|227827930|ref|YP_002829710.1|	-	0.06	13.5	0.2	0.29	11.3	0.2	2.0	1	1	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
HGTP_anticodon	PF03129.20	gi|227827931|ref|YP_002829711.1|	-	0.0065	16.6	1.3	0.24	11.6	0.3	2.1	1	1	1	2	2	2	2	Anticodon	binding	domain
Prominin	PF05478.11	gi|227827931|ref|YP_002829711.1|	-	0.059	11.3	1.2	0.065	11.2	1.2	1.0	1	0	0	1	1	1	0	Prominin
Nuc_rec_co-act	PF08815.10	gi|227827931|ref|YP_002829711.1|	-	0.12	12.2	1.1	0.32	10.9	0.2	2.0	2	0	0	2	2	2	0	Nuclear	receptor	coactivator
PhoU_div	PF01865.16	gi|227827932|ref|YP_002829712.1|	-	0.00032	20.1	10.7	0.0088	15.4	3.1	2.6	1	1	1	2	2	2	2	Protein	of	unknown	function	DUF47
Arg_decarb_HB	PF17810.1	gi|227827932|ref|YP_002829712.1|	-	0.012	15.9	1.1	0.31	11.3	0.1	2.6	2	1	0	2	2	2	0	Arginine	decarboxylase	helical	bundle	domain
Zn_protease	PF05618.11	gi|227827932|ref|YP_002829712.1|	-	0.045	13.6	0.1	0.083	12.8	0.1	1.4	1	0	0	1	1	1	0	Putative	ATP-dependant	zinc	protease
CRIC_ras_sig	PF10534.9	gi|227827932|ref|YP_002829712.1|	-	0.59	10.3	3.6	6.4	7.0	0.7	2.3	2	0	0	2	2	2	0	Connector	enhancer	of	kinase	suppressor	of	ras
PhoU	PF01895.19	gi|227827932|ref|YP_002829712.1|	-	0.79	10.2	11.5	0.2	12.1	1.6	3.2	1	1	2	3	3	3	0	PhoU	domain
tRNA_int_endo	PF01974.17	gi|227827933|ref|YP_002829713.1|	-	1.7e-28	98.5	0.6	2.8e-28	97.8	0.1	1.6	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|227827933|ref|YP_002829713.1|	-	7.8e-19	67.1	0.2	6.6e-18	64.1	0.2	2.0	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	N-terminal	domain
Rrp40_N	PF18311.1	gi|227827933|ref|YP_002829713.1|	-	0.18	11.8	0.0	0.32	11.0	0.0	1.4	1	0	0	1	1	1	0	Exosome	complex	exonuclease	Rrp40	N-terminal	domain
DUF2083	PF09856.9	gi|227827934|ref|YP_002829714.1|	-	0.27	11.1	2.1	2	8.2	0.0	2.1	1	1	1	2	2	2	0	Predicted	transcriptional	regulator	(DUF2083)
Flavoprotein	PF02441.19	gi|227827935|ref|YP_002829715.1|	-	6.2e-26	91.0	0.3	8.2e-26	90.6	0.3	1.1	1	0	0	1	1	1	1	Flavoprotein
CoA_binding	PF02629.19	gi|227827935|ref|YP_002829715.1|	-	0.02	15.6	0.3	0.074	13.7	0.1	1.9	2	0	0	2	2	2	0	CoA	binding	domain
Ploopntkinase2	PF18747.1	gi|227827935|ref|YP_002829715.1|	-	0.12	11.6	0.1	0.15	11.3	0.1	1.2	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase2
Arc_trans_TRASH	PF08394.10	gi|227827936|ref|YP_002829716.1|	-	1.2e-05	25.5	3.4	1.9e-05	24.9	3.4	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
Corona_NS8	PF12093.8	gi|227827936|ref|YP_002829716.1|	-	0.0057	17.2	0.9	0.0063	17.1	0.9	1.1	1	0	0	1	1	1	1	Coronavirus	NS8	protein
zf-SNAP50_C	PF12251.8	gi|227827936|ref|YP_002829716.1|	-	0.058	13.1	1.8	0.06	13.0	1.8	1.1	1	0	0	1	1	1	0	snRNA-activating	protein	of	50kDa	MW	C	terminal
zf-FCS	PF06467.14	gi|227827936|ref|YP_002829716.1|	-	1.2	9.1	10.7	2.6	8.0	10.7	1.7	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Thi4	PF01946.17	gi|227827937|ref|YP_002829717.1|	-	1.7e-83	279.5	2.7	1.9e-83	279.3	2.7	1.0	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.24	gi|227827937|ref|YP_002829717.1|	-	6.5e-15	55.6	5.1	8.3e-09	35.5	0.7	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|227827937|ref|YP_002829717.1|	-	1.3e-10	41.2	2.1	1.7e-10	40.9	2.1	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|227827937|ref|YP_002829717.1|	-	6.4e-10	39.1	0.5	2.7e-09	37.1	0.5	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|227827937|ref|YP_002829717.1|	-	9.2e-10	38.2	8.6	1.6e-06	27.5	1.3	3.1	3	0	0	3	3	3	3	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227827937|ref|YP_002829717.1|	-	4.2e-08	32.8	0.1	6.4e-08	32.2	0.1	1.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|227827937|ref|YP_002829717.1|	-	7.2e-07	28.8	0.1	1.2e-06	28.1	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|227827937|ref|YP_002829717.1|	-	1.2e-05	24.3	0.2	1.6e-05	23.8	0.2	1.3	1	0	0	1	1	1	1	HI0933-like	protein
GIDA	PF01134.22	gi|227827937|ref|YP_002829717.1|	-	4.1e-05	22.8	0.6	9.1e-05	21.7	0.6	1.5	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|227827937|ref|YP_002829717.1|	-	0.00018	20.9	0.0	0.00032	20.1	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227827937|ref|YP_002829717.1|	-	0.00018	22.0	0.5	0.00085	19.8	0.2	2.5	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|227827937|ref|YP_002829717.1|	-	0.00046	19.6	0.1	0.00082	18.8	0.1	1.4	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
K_oxygenase	PF13434.6	gi|227827937|ref|YP_002829717.1|	-	0.0046	16.2	0.0	0.0083	15.3	0.0	1.3	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.12	gi|227827937|ref|YP_002829717.1|	-	0.011	14.8	0.7	0.027	13.5	0.7	1.8	1	1	0	1	1	1	0	Lycopene	cyclase	protein
ThiF	PF00899.21	gi|227827937|ref|YP_002829717.1|	-	0.034	13.5	0.0	0.082	12.2	0.0	1.5	1	0	0	1	1	1	0	ThiF	family
NAD_binding_9	PF13454.6	gi|227827937|ref|YP_002829717.1|	-	0.041	13.9	0.9	0.1	12.6	0.1	2.1	2	1	0	2	2	2	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.14	gi|227827937|ref|YP_002829717.1|	-	0.078	11.8	3.2	0.39	9.5	0.7	2.2	2	1	0	2	2	2	0	Tryptophan	halogenase
GMC_oxred_N	PF00732.19	gi|227827937|ref|YP_002829717.1|	-	0.14	11.5	0.0	0.26	10.6	0.0	1.3	1	0	0	1	1	1	0	GMC	oxidoreductase
Ribosomal_S24e	PF01282.19	gi|227827938|ref|YP_002829718.1|	-	9.3e-21	73.6	0.1	1.3e-20	73.1	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S24e
SHS2_FTSA	PF02491.20	gi|227827938|ref|YP_002829718.1|	-	0.054	13.9	0.3	7.7	7.0	0.0	2.3	2	1	0	2	2	2	0	SHS2	domain	inserted	in	FTSA
Ribosomal_S27	PF01599.19	gi|227827939|ref|YP_002829719.1|	-	4.4e-14	52.4	1.9	6e-14	51.9	1.9	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
Zn_Tnp_IS1595	PF12760.7	gi|227827939|ref|YP_002829719.1|	-	0.00024	21.0	2.6	0.00031	20.6	2.6	1.2	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|227827939|ref|YP_002829719.1|	-	0.00032	20.6	0.7	0.00037	20.3	0.7	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_ribbon_SprT	PF17283.2	gi|227827939|ref|YP_002829719.1|	-	0.00094	19.0	0.9	0.0014	18.5	0.9	1.3	1	0	0	1	1	1	1	SprT-like	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227827939|ref|YP_002829719.1|	-	0.0038	16.9	3.8	0.069	12.9	0.3	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
FAM72	PF14976.6	gi|227827939|ref|YP_002829719.1|	-	0.0073	16.5	0.3	0.0078	16.4	0.3	1.1	1	0	0	1	1	1	1	FAM72	protein
Lar_restr_allev	PF14354.6	gi|227827939|ref|YP_002829719.1|	-	0.009	16.4	1.0	0.013	15.9	1.0	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
RNA_POL_M_15KD	PF02150.16	gi|227827939|ref|YP_002829719.1|	-	0.012	15.5	0.3	0.022	14.6	0.3	1.6	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
UPF0179	PF03684.13	gi|227827939|ref|YP_002829719.1|	-	0.013	15.3	0.4	0.015	15.2	0.4	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0179)
Nudix_N_2	PF14803.6	gi|227827939|ref|YP_002829719.1|	-	0.019	14.8	1.8	0.05	13.5	1.8	1.7	1	1	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_13	PF09855.9	gi|227827939|ref|YP_002829719.1|	-	0.053	13.7	2.1	0.34	11.1	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
GFA	PF04828.14	gi|227827939|ref|YP_002829719.1|	-	0.053	13.9	1.1	0.94	9.9	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
FlhC	PF05280.11	gi|227827939|ref|YP_002829719.1|	-	0.068	12.9	0.1	0.068	12.9	0.1	1.1	1	0	0	1	1	1	0	Flagellar	transcriptional	activator	(FlhC)
zf_UBZ	PF18439.1	gi|227827939|ref|YP_002829719.1|	-	0.069	12.8	2.1	0.42	10.3	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
YhfH	PF14149.6	gi|227827939|ref|YP_002829719.1|	-	0.075	13.0	0.5	0.075	13.0	0.5	2.1	2	0	0	2	2	2	0	YhfH-like	protein
DUF1451	PF07295.11	gi|227827939|ref|YP_002829719.1|	-	0.082	12.9	0.4	0.088	12.9	0.4	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
HalOD2	PF18547.1	gi|227827939|ref|YP_002829719.1|	-	0.11	12.4	1.9	2.5	8.0	0.3	2.1	2	0	0	2	2	2	0	Halobacterial	output	domain	2
ADK_lid	PF05191.14	gi|227827939|ref|YP_002829719.1|	-	0.19	11.8	3.1	6.9	6.7	0.6	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
UPF0547	PF10571.9	gi|227827939|ref|YP_002829719.1|	-	0.19	11.8	4.1	0.5	10.5	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf_C2H2_10	PF18414.1	gi|227827939|ref|YP_002829719.1|	-	0.25	10.9	2.2	4.4	6.9	0.1	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
zf-ribbon_3	PF13248.6	gi|227827939|ref|YP_002829719.1|	-	0.33	10.4	6.2	0.34	10.4	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227827939|ref|YP_002829719.1|	-	0.83	9.8	4.1	1.1	9.4	0.3	2.1	1	1	2	3	3	3	0	Zinc	ribbon	domain
Mu-like_Com	PF10122.9	gi|227827939|ref|YP_002829719.1|	-	1.4	8.4	6.2	0.6	9.6	2.9	1.9	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
Peptidase_M22	PF00814.25	gi|227827940|ref|YP_002829720.1|	-	2.3e-74	250.5	0.0	2.8e-74	250.2	0.0	1.0	1	0	0	1	1	1	1	Glycoprotease	family
Carbam_trans_N	PF02543.15	gi|227827940|ref|YP_002829720.1|	-	0.00096	18.9	0.0	0.0051	16.5	0.0	1.9	2	0	0	2	2	2	1	Carbamoyltransferase	N-terminus
CheX	PF13690.6	gi|227827940|ref|YP_002829720.1|	-	0.086	13.0	0.0	1.9	8.7	0.0	2.5	2	1	0	2	2	2	0	Chemotaxis	phosphatase	CheX
Pkinase	PF00069.25	gi|227827941|ref|YP_002829721.1|	-	1.6e-10	40.8	0.2	1.8e-10	40.6	0.2	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.14	gi|227827941|ref|YP_002829721.1|	-	1.9e-07	30.7	0.0	3e-07	30.0	0.0	1.4	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase_Tyr	PF07714.17	gi|227827941|ref|YP_002829721.1|	-	3.1e-07	30.0	0.0	3.6e-07	29.7	0.0	1.1	1	0	0	1	1	1	1	Protein	tyrosine	kinase
APH	PF01636.23	gi|227827941|ref|YP_002829721.1|	-	4.1e-07	30.2	0.0	0.0076	16.2	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
RIO1	PF01163.22	gi|227827941|ref|YP_002829721.1|	-	4.5e-06	26.4	0.1	6.4e-06	25.9	0.1	1.2	1	0	0	1	1	1	1	RIO1	family
WaaY	PF06176.11	gi|227827941|ref|YP_002829721.1|	-	1.6e-05	24.7	0.7	2e-05	24.3	0.7	1.2	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Choline_kinase	PF01633.20	gi|227827941|ref|YP_002829721.1|	-	0.00013	21.6	0.1	0.00032	20.3	0.0	1.4	1	1	0	1	1	1	1	Choline/ethanolamine	kinase
EcKinase	PF02958.20	gi|227827941|ref|YP_002829721.1|	-	0.0076	15.6	0.0	0.011	15.1	0.0	1.2	1	0	0	1	1	1	1	Ecdysteroid	kinase
Ham1p_like	PF01725.16	gi|227827942|ref|YP_002829722.1|	-	5.1e-47	160.2	0.0	5.7e-47	160.1	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
Aldo_ket_red	PF00248.21	gi|227827943|ref|YP_002829723.1|	-	7.8e-46	156.6	0.0	1.1e-45	156.1	0.0	1.2	1	0	0	1	1	1	1	Aldo/keto	reductase	family
vATP-synt_AC39	PF01992.16	gi|227827945|ref|YP_002829725.1|	-	1.9e-20	73.7	10.6	2.2e-20	73.4	10.6	1.1	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
ER	PF01133.17	gi|227827945|ref|YP_002829725.1|	-	5.6	7.0	8.5	2.2	8.3	1.4	3.1	2	2	1	3	3	3	0	Enhancer	of	rudimentary
OmpH	PF03938.14	gi|227827946|ref|YP_002829726.1|	-	0.0058	17.0	9.1	0.0076	16.6	9.1	1.1	1	0	0	1	1	1	1	Outer	membrane	protein	(OmpH-like)
CHASE3	PF05227.13	gi|227827946|ref|YP_002829726.1|	-	0.014	15.3	3.8	0.021	14.7	3.8	1.3	1	0	0	1	1	1	0	CHASE3	domain
Ntox15	PF15604.6	gi|227827946|ref|YP_002829726.1|	-	0.026	14.6	4.9	0.033	14.3	4.9	1.1	1	0	0	1	1	1	0	Novel	toxin	15
V-ATPase_G_2	PF16999.5	gi|227827946|ref|YP_002829726.1|	-	0.028	14.8	7.4	0.099	13.1	7.2	1.8	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
DUF3435	PF11917.8	gi|227827946|ref|YP_002829726.1|	-	0.039	12.9	4.0	0.048	12.6	4.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
Sec15	PF04091.12	gi|227827946|ref|YP_002829726.1|	-	0.039	13.4	2.9	0.041	13.3	1.3	1.7	1	1	1	2	2	2	0	Exocyst	complex	subunit	Sec15-like
Focal_AT	PF03623.13	gi|227827946|ref|YP_002829726.1|	-	0.065	13.2	3.6	0.095	12.7	3.6	1.4	1	1	0	1	1	1	0	Focal	adhesion	targeting	region
DUF842	PF05811.13	gi|227827946|ref|YP_002829726.1|	-	0.066	12.9	0.9	0.091	12.5	0.9	1.3	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF842)
V-ATPase_G	PF03179.15	gi|227827946|ref|YP_002829726.1|	-	0.083	13.4	9.6	0.25	11.9	6.2	2.2	1	1	1	2	2	2	0	Vacuolar	(H+)-ATPase	G	subunit
7TMR-HDED	PF07697.11	gi|227827946|ref|YP_002829726.1|	-	0.086	12.9	6.5	0.13	12.4	6.5	1.2	1	0	0	1	1	1	0	7TM-HD	extracellular
MtaB	PF12176.8	gi|227827946|ref|YP_002829726.1|	-	0.088	11.6	1.7	0.096	11.5	1.7	1.1	1	0	0	1	1	1	0	Methanol-cobalamin	methyltransferase	B	subunit
MEDS	PF14417.6	gi|227827946|ref|YP_002829726.1|	-	0.12	12.2	0.6	0.15	11.9	0.6	1.1	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
Peptidase_S46	PF10459.9	gi|227827946|ref|YP_002829726.1|	-	0.18	10.4	5.0	0.21	10.2	5.0	1.0	1	0	0	1	1	1	0	Peptidase	S46
DUF4407	PF14362.6	gi|227827946|ref|YP_002829726.1|	-	0.2	11.0	4.3	0.29	10.5	4.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Fib_alpha	PF08702.10	gi|227827946|ref|YP_002829726.1|	-	0.29	11.3	8.6	0.7	10.1	4.4	2.0	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
CelTOS	PF18659.1	gi|227827946|ref|YP_002829726.1|	-	0.29	11.6	5.1	0.33	11.4	4.4	1.4	1	1	0	1	1	1	0	Cell-traversal	protein	for	ookinetes	and	sporozoites
DUF883	PF05957.13	gi|227827946|ref|YP_002829726.1|	-	0.32	11.6	7.4	1.6	9.4	2.0	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF5401	PF17380.2	gi|227827946|ref|YP_002829726.1|	-	0.81	7.7	11.7	0.93	7.5	11.7	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5401)
TMPIT	PF07851.13	gi|227827946|ref|YP_002829726.1|	-	0.93	8.7	3.9	1.3	8.2	3.9	1.3	1	0	0	1	1	1	0	TMPIT-like	protein
Ribosomal_L29	PF00831.23	gi|227827946|ref|YP_002829726.1|	-	1.3	9.0	16.0	0.63	10.1	0.8	3.3	2	1	1	3	3	3	0	Ribosomal	L29	protein
PhoU	PF01895.19	gi|227827946|ref|YP_002829726.1|	-	1.4	9.4	12.0	1.9	9.0	4.6	2.2	1	1	1	2	2	2	0	PhoU	domain
CorA	PF01544.18	gi|227827946|ref|YP_002829726.1|	-	1.8	7.8	8.1	2.1	7.6	8.1	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
YtxH	PF12732.7	gi|227827946|ref|YP_002829726.1|	-	8.6	7.0	8.0	87	3.8	8.0	2.2	1	1	0	1	1	1	0	YtxH-like	protein
GCD14	PF08704.10	gi|227827947|ref|YP_002829727.1|	-	4.3e-32	111.8	0.0	5.9e-32	111.3	0.0	1.0	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|227827947|ref|YP_002829727.1|	-	7e-10	38.9	0.0	9e-10	38.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|227827947|ref|YP_002829727.1|	-	9.4e-08	31.5	0.4	2.4e-07	30.1	0.1	1.7	1	1	0	2	2	2	1	O-methyltransferase
PCMT	PF01135.19	gi|227827947|ref|YP_002829727.1|	-	1.6e-06	28.0	0.0	2.4e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|227827947|ref|YP_002829727.1|	-	9.7e-06	25.2	0.4	1.8e-05	24.3	0.3	1.5	1	1	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
GCD14_N	PF14801.6	gi|227827947|ref|YP_002829727.1|	-	4.7e-05	23.1	0.0	9e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit	N-term
MTS	PF05175.14	gi|227827947|ref|YP_002829727.1|	-	0.00013	21.6	0.0	0.0002	21.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_32	PF13679.6	gi|227827947|ref|YP_002829727.1|	-	0.00014	21.9	0.0	0.0002	21.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827947|ref|YP_002829727.1|	-	0.00035	21.2	0.0	0.00056	20.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|227827947|ref|YP_002829727.1|	-	0.00044	20.0	0.1	0.0008	19.2	0.1	1.5	1	1	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_18	PF12847.7	gi|227827947|ref|YP_002829727.1|	-	0.00095	19.1	0.0	0.0018	18.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|227827947|ref|YP_002829727.1|	-	0.0045	16.6	0.0	0.0094	15.5	0.0	1.5	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
UPF0020	PF01170.18	gi|227827947|ref|YP_002829727.1|	-	0.027	14.2	0.0	0.045	13.4	0.0	1.3	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_24	PF13578.6	gi|227827947|ref|YP_002829727.1|	-	0.029	15.4	0.0	0.071	14.1	0.0	1.6	2	0	0	2	2	2	0	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227827947|ref|YP_002829727.1|	-	0.035	13.4	0.0	0.046	13.1	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.20	gi|227827947|ref|YP_002829727.1|	-	0.059	12.4	0.0	0.083	11.9	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
RHH_1	PF01402.21	gi|227827948|ref|YP_002829728.1|	-	1.9e-08	34.0	0.0	2.4e-08	33.6	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParD_antitoxin	PF03693.14	gi|227827948|ref|YP_002829728.1|	-	3.6e-06	27.3	0.0	3.6e-06	27.3	0.0	1.1	1	0	0	1	1	1	1	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
RHH_8	PF17723.1	gi|227827948|ref|YP_002829728.1|	-	0.00018	21.7	0.0	0.00018	21.7	0.0	1.1	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
HicB_lk_antitox	PF15919.5	gi|227827948|ref|YP_002829728.1|	-	0.094	12.8	0.0	0.1	12.7	0.0	1.1	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
TrmB	PF01978.19	gi|227827949|ref|YP_002829729.1|	-	1.5e-21	76.0	0.9	2.3e-21	75.4	0.2	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|227827949|ref|YP_002829729.1|	-	0.0012	19.1	0.1	0.0027	18.1	0.0	1.6	2	0	0	2	2	2	1	Penicillinase	repressor
HTH_9	PF08221.11	gi|227827949|ref|YP_002829729.1|	-	0.0016	18.5	0.0	0.005	16.9	0.0	1.8	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|227827949|ref|YP_002829729.1|	-	0.021	14.6	0.0	0.049	13.5	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|227827949|ref|YP_002829729.1|	-	0.049	13.2	0.0	0.1	12.2	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|227827949|ref|YP_002829729.1|	-	0.1	13.1	0.0	0.2	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Ribosomal_S25	PF03297.15	gi|227827950|ref|YP_002829730.1|	-	2.1e-22	79.2	10.0	2.4e-22	79.0	10.0	1.0	1	0	0	1	1	1	1	S25	ribosomal	protein
HTH_24	PF13412.6	gi|227827950|ref|YP_002829730.1|	-	4.4e-07	29.3	1.5	4.5e-07	29.3	0.4	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TFIIF_alpha	PF05793.12	gi|227827950|ref|YP_002829730.1|	-	0.0032	16.1	3.4	0.0032	16.1	3.4	1.1	1	0	0	1	1	1	1	Transcription	initiation	factor	IIF,	alpha	subunit	(TFIIF-alpha)
MarR	PF01047.22	gi|227827950|ref|YP_002829730.1|	-	0.0078	16.1	0.1	0.013	15.4	0.1	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|227827950|ref|YP_002829730.1|	-	0.0085	16.4	0.9	0.054	13.8	0.3	2.0	1	1	1	2	2	2	1	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|227827950|ref|YP_002829730.1|	-	0.013	15.4	0.5	0.013	15.4	0.5	1.8	2	0	0	2	2	2	0	TFIIE	alpha	subunit
HTH_11	PF08279.12	gi|227827950|ref|YP_002829730.1|	-	0.017	15.1	1.8	0.017	15.0	0.7	1.6	2	0	0	2	2	2	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|227827950|ref|YP_002829730.1|	-	0.02	14.9	0.5	0.32	11.0	0.1	2.1	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|227827950|ref|YP_002829730.1|	-	0.058	13.3	0.6	0.1	12.5	0.4	1.6	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
FANCI_S2	PF14676.6	gi|227827950|ref|YP_002829730.1|	-	0.092	13.1	0.8	0.11	12.7	0.8	1.3	1	1	0	1	1	1	0	FANCI	solenoid	2
MarR_2	PF12802.7	gi|227827950|ref|YP_002829730.1|	-	0.096	12.6	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	MarR	family
CN_hydrolase	PF00795.22	gi|227827951|ref|YP_002829731.1|	-	1.1e-23	83.9	0.0	1.4e-23	83.5	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Topoisom_bac	PF01131.20	gi|227827952|ref|YP_002829732.1|	-	1.9e-73	247.9	6.1	3.8e-73	246.9	6.1	1.5	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|227827952|ref|YP_002829732.1|	-	5.2e-27	94.1	0.5	2e-26	92.2	0.1	2.4	2	0	0	2	2	1	1	Toprim	domain
DEAD	PF00270.29	gi|227827952|ref|YP_002829732.1|	-	2e-14	53.8	0.1	5.1e-13	49.2	0.0	2.7	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
zf_Rg	PF17915.1	gi|227827952|ref|YP_002829732.1|	-	3.3e-10	39.2	6.1	5.2e-10	38.6	0.8	2.8	3	0	0	3	3	3	1	Reverse	gyrase	zinc	finger
ResIII	PF04851.15	gi|227827952|ref|YP_002829732.1|	-	6.1e-07	29.6	0.3	2.2e-06	27.8	0.3	2.0	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|227827952|ref|YP_002829732.1|	-	7.8e-07	29.4	2.0	0.031	14.6	0.1	4.8	6	0	0	6	6	4	1	Helicase	conserved	C-terminal	domain
AAA_11	PF13086.6	gi|227827952|ref|YP_002829732.1|	-	0.00013	21.8	0.0	0.00044	20.1	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
zf-ribbon_3	PF13248.6	gi|227827952|ref|YP_002829732.1|	-	0.0017	17.7	2.0	1.4	8.4	0.1	2.6	2	0	0	2	2	2	2	zinc-ribbon	domain
AAA_25	PF13481.6	gi|227827952|ref|YP_002829732.1|	-	0.042	13.4	0.0	0.079	12.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DNA_ligase_ZBD	PF03119.16	gi|227827952|ref|YP_002829732.1|	-	0.085	12.9	2.3	0.24	11.4	0.1	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Rad50_zn_hook	PF04423.14	gi|227827952|ref|YP_002829732.1|	-	0.12	12.3	0.6	1.7	8.6	0.0	3.2	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
Zn-ribbon_8	PF09723.10	gi|227827952|ref|YP_002829732.1|	-	0.17	12.0	1.5	16	5.7	0.4	2.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|227827952|ref|YP_002829732.1|	-	0.22	11.5	2.4	16	5.5	0.6	2.5	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF4428	PF14471.6	gi|227827952|ref|YP_002829732.1|	-	0.7	9.9	5.2	5.9	6.9	0.6	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
zf-C4_Topoisom	PF01396.19	gi|227827952|ref|YP_002829732.1|	-	0.87	9.4	5.1	11	5.9	0.2	2.7	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
YhfH	PF14149.6	gi|227827952|ref|YP_002829732.1|	-	1.2	9.2	3.6	16	5.5	0.5	2.7	2	0	0	2	2	2	0	YhfH-like	protein
TF_Zn_Ribbon	PF08271.12	gi|227827952|ref|YP_002829732.1|	-	4.3	6.9	6.4	8.2	6.0	0.1	2.7	2	0	0	2	2	2	0	TFIIB	zinc-binding
AAA	PF00004.29	gi|227827953|ref|YP_002829733.1|	-	7.3e-101	333.8	0.0	4.4e-49	166.3	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|227827953|ref|YP_002829733.1|	-	1.1e-28	98.8	1.9	5.9e-16	58.0	0.1	3.0	2	1	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|227827953|ref|YP_002829733.1|	-	1.1e-23	83.2	0.8	4e-23	81.4	0.8	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.17	gi|227827953|ref|YP_002829733.1|	-	2.1e-17	62.6	0.1	6.2e-14	51.5	0.1	2.7	2	0	0	2	2	2	2	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.12	gi|227827953|ref|YP_002829733.1|	-	5.1e-17	62.1	0.0	6.3e-09	35.8	0.0	3.0	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|227827953|ref|YP_002829733.1|	-	1.3e-15	57.9	0.0	1.1e-07	32.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|227827953|ref|YP_002829733.1|	-	7.4e-14	52.5	0.1	4.6e-06	27.1	0.0	3.8	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227827953|ref|YP_002829733.1|	-	2.3e-12	47.3	0.5	0.0099	16.2	0.0	4.5	2	2	1	4	4	4	3	AAA	domain
AAA_5	PF07728.14	gi|227827953|ref|YP_002829733.1|	-	4.9e-12	46.0	1.8	0.00017	21.6	0.1	4.4	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.13	gi|227827953|ref|YP_002829733.1|	-	1.5e-11	44.1	0.1	0.00018	20.9	0.0	3.3	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|227827953|ref|YP_002829733.1|	-	1.1e-10	41.8	0.0	0.00075	19.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|227827953|ref|YP_002829733.1|	-	5.7e-10	39.3	0.0	0.00023	21.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|227827953|ref|YP_002829733.1|	-	2.8e-09	37.6	0.1	0.0017	18.9	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
Vps4_C	PF09336.10	gi|227827953|ref|YP_002829733.1|	-	1.5e-08	34.5	3.0	0.00093	19.1	0.1	3.1	3	0	0	3	3	2	2	Vps4	C	terminal	oligomerisation	domain
IstB_IS21	PF01695.17	gi|227827953|ref|YP_002829733.1|	-	1.8e-08	34.3	0.0	0.0078	16.0	0.0	2.7	3	0	0	3	3	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|227827953|ref|YP_002829733.1|	-	1.4e-07	31.1	0.6	0.0083	15.5	0.1	2.8	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|227827953|ref|YP_002829733.1|	-	1.9e-07	31.4	0.0	0.0056	17.1	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
AAA_28	PF13521.6	gi|227827953|ref|YP_002829733.1|	-	2.6e-07	31.0	0.0	0.033	14.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|227827953|ref|YP_002829733.1|	-	2.3e-06	27.5	0.0	0.087	12.5	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|227827953|ref|YP_002829733.1|	-	2.3e-06	27.6	0.1	0.092	12.8	0.0	2.8	2	1	1	3	3	3	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|227827953|ref|YP_002829733.1|	-	5.2e-06	26.5	0.6	0.32	10.9	0.0	3.8	4	0	0	4	4	4	2	NACHT	domain
AAA_25	PF13481.6	gi|227827953|ref|YP_002829733.1|	-	6e-06	26.0	4.1	0.2	11.2	0.3	3.8	2	2	1	3	3	3	2	AAA	domain
AAA_3	PF07726.11	gi|227827953|ref|YP_002829733.1|	-	7.1e-06	25.9	0.0	0.042	13.7	0.0	2.9	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|227827953|ref|YP_002829733.1|	-	7.1e-06	26.6	0.0	1	9.9	0.0	3.7	3	0	0	3	3	3	2	ABC	transporter
DUF815	PF05673.13	gi|227827953|ref|YP_002829733.1|	-	1.1e-05	24.7	0.0	0.063	12.4	0.0	2.6	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|227827953|ref|YP_002829733.1|	-	1.4e-05	24.9	1.0	0.79	9.4	0.0	4.5	4	1	0	4	4	3	2	Sigma-54	interaction	domain
Bac_DnaA	PF00308.18	gi|227827953|ref|YP_002829733.1|	-	1.5e-05	25.0	0.0	0.0073	16.2	0.0	3.5	2	2	1	3	3	3	1	Bacterial	dnaA	protein
Molydop_binding	PF01568.21	gi|227827953|ref|YP_002829733.1|	-	1.9e-05	24.7	0.1	9e-05	22.5	0.0	2.2	2	0	0	2	2	1	1	Molydopterin	dinucleotide	binding	domain
ATPase_2	PF01637.18	gi|227827953|ref|YP_002829733.1|	-	3.1e-05	24.0	0.2	0.059	13.3	0.0	3.7	3	1	1	4	4	3	1	ATPase	domain	predominantly	from	Archaea
AAA_7	PF12775.7	gi|227827953|ref|YP_002829733.1|	-	4.6e-05	23.0	0.0	0.48	9.9	0.0	2.8	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
Zeta_toxin	PF06414.12	gi|227827953|ref|YP_002829733.1|	-	9.8e-05	21.7	0.1	0.23	10.7	0.0	2.7	2	0	0	2	2	2	2	Zeta	toxin
AAA_11	PF13086.6	gi|227827953|ref|YP_002829733.1|	-	0.00028	20.8	0.9	0.33	10.7	0.8	3.1	2	1	0	2	2	2	1	AAA	domain
ATPase	PF06745.13	gi|227827953|ref|YP_002829733.1|	-	0.00029	20.3	7.9	0.46	9.8	0.0	5.0	5	0	0	5	5	5	1	KaiC
Parvo_NS1	PF01057.17	gi|227827953|ref|YP_002829733.1|	-	0.00036	19.7	0.1	0.8	8.7	0.0	2.4	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_17	PF13207.6	gi|227827953|ref|YP_002829733.1|	-	0.0005	20.5	0.0	0.68	10.4	0.0	2.9	2	0	0	2	2	2	1	AAA	domain
PhoH	PF02562.16	gi|227827953|ref|YP_002829733.1|	-	0.00086	18.8	0.5	0.43	10.0	0.1	2.8	2	0	0	2	2	2	1	PhoH-like	protein
Sigma54_activ_2	PF14532.6	gi|227827953|ref|YP_002829733.1|	-	0.0019	18.3	0.0	1.5	8.9	0.0	2.8	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Rad17	PF03215.15	gi|227827953|ref|YP_002829733.1|	-	0.002	18.1	0.0	3.9	7.4	0.0	3.4	2	1	0	2	2	2	0	Rad17	P-loop	domain
AAA_19	PF13245.6	gi|227827953|ref|YP_002829733.1|	-	0.0051	17.2	2.3	3.4	8.0	0.0	3.4	2	1	0	2	2	2	0	AAA	domain
TniB	PF05621.11	gi|227827953|ref|YP_002829733.1|	-	0.0052	16.2	0.1	4	6.8	0.0	3.8	5	0	0	5	5	3	0	Bacterial	TniB	protein
AFG1_ATPase	PF03969.16	gi|227827953|ref|YP_002829733.1|	-	0.0054	15.7	0.0	2.9	6.7	0.0	2.6	2	0	0	2	2	2	1	AFG1-like	ATPase
AAA_30	PF13604.6	gi|227827953|ref|YP_002829733.1|	-	0.0064	16.2	0.3	3.1	7.4	0.1	2.9	3	0	0	3	3	2	0	AAA	domain
NB-ARC	PF00931.22	gi|227827953|ref|YP_002829733.1|	-	0.0073	15.5	1.3	1.7	7.8	0.0	2.9	3	0	0	3	3	3	1	NB-ARC	domain
AAA_29	PF13555.6	gi|227827953|ref|YP_002829733.1|	-	0.009	15.7	0.1	14	5.5	0.0	3.9	4	0	0	4	4	4	0	P-loop	containing	region	of	AAA	domain
DUF2075	PF09848.9	gi|227827953|ref|YP_002829733.1|	-	0.016	14.5	0.0	2.6	7.2	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Guanylate_kin	PF00625.21	gi|227827953|ref|YP_002829733.1|	-	0.021	14.5	0.2	13	5.4	0.0	3.8	2	2	2	4	4	4	0	Guanylate	kinase
IPT	PF01745.16	gi|227827953|ref|YP_002829733.1|	-	0.026	13.9	0.2	1.4	8.2	0.1	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
NTPase_1	PF03266.15	gi|227827953|ref|YP_002829733.1|	-	0.032	14.1	4.0	12	5.7	0.0	4.3	3	1	1	4	4	3	0	NTPase
Cytidylate_kin	PF02224.18	gi|227827953|ref|YP_002829733.1|	-	0.035	13.8	2.2	6.4	6.5	0.0	3.5	4	0	0	4	4	3	0	Cytidylate	kinase
ATP-synt_ab	PF00006.25	gi|227827953|ref|YP_002829733.1|	-	0.038	13.6	0.0	0.95	9.1	0.0	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
PduV-EutP	PF10662.9	gi|227827953|ref|YP_002829733.1|	-	0.039	13.7	0.0	10	5.8	0.0	2.6	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Viral_helicase1	PF01443.18	gi|227827953|ref|YP_002829733.1|	-	0.045	13.5	0.0	3.3	7.4	0.0	2.5	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
SKI	PF01202.22	gi|227827953|ref|YP_002829733.1|	-	0.045	13.9	0.0	12	6.0	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
MMR_HSR1	PF01926.23	gi|227827953|ref|YP_002829733.1|	-	0.059	13.4	0.0	2.9	8.0	0.0	2.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
T2SSE	PF00437.20	gi|227827953|ref|YP_002829733.1|	-	0.09	11.8	0.0	5.2	6.1	0.0	2.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
RsgA_GTPase	PF03193.16	gi|227827953|ref|YP_002829733.1|	-	0.11	12.4	0.0	2.9	7.8	0.0	2.9	2	0	0	2	2	2	0	RsgA	GTPase
Cytidylate_kin2	PF13189.6	gi|227827953|ref|YP_002829733.1|	-	0.11	12.6	0.0	16	5.6	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
PhosphMutase	PF10143.9	gi|227827954|ref|YP_002829734.1|	-	6.2e-53	179.1	0.0	1.1e-52	178.4	0.0	1.4	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.18	gi|227827954|ref|YP_002829734.1|	-	1.5e-40	139.2	0.1	1.7e-40	139.0	0.1	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Sulfatase	PF00884.23	gi|227827954|ref|YP_002829734.1|	-	0.0013	18.2	0.0	0.0017	17.8	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|227827954|ref|YP_002829734.1|	-	0.0018	17.9	0.0	0.0032	17.1	0.0	1.4	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
HEPPP_synt_1	PF07307.11	gi|227827954|ref|YP_002829734.1|	-	0.081	12.5	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Heptaprenyl	diphosphate	synthase	(HEPPP	synthase)	subunit	1
DUF359	PF04019.12	gi|227827955|ref|YP_002829735.1|	-	1.4e-34	118.5	0.9	1.7e-34	118.2	0.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
BspA_v	PF18220.1	gi|227827955|ref|YP_002829735.1|	-	0.032	14.3	0.2	0.89	9.7	0.0	2.2	1	1	1	2	2	2	0	Adhesin	BspA	variable	domain
SUKH_6	PF14568.6	gi|227827955|ref|YP_002829735.1|	-	0.049	14.0	0.0	0.068	13.6	0.0	1.3	1	0	0	1	1	1	0	SMI1-KNR4	cell-wall
Spt4	PF06093.13	gi|227827956|ref|YP_002829736.1|	-	2.6e-15	56.3	0.7	3.1e-15	56.0	0.7	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
zf-ribbon_3	PF13248.6	gi|227827956|ref|YP_002829736.1|	-	0.00056	19.2	1.8	0.00079	18.8	1.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|227827956|ref|YP_002829736.1|	-	0.0013	18.4	1.4	0.0022	17.6	0.1	1.8	2	0	0	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DZR	PF12773.7	gi|227827956|ref|YP_002829736.1|	-	0.0018	18.2	1.8	0.0025	17.8	1.8	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
RecR	PF02132.15	gi|227827956|ref|YP_002829736.1|	-	0.0034	16.9	0.9	0.0046	16.5	0.9	1.2	1	0	0	1	1	1	1	RecR	protein
HypA	PF01155.19	gi|227827956|ref|YP_002829736.1|	-	0.0045	17.0	0.5	0.0047	16.9	0.5	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|227827956|ref|YP_002829736.1|	-	0.0068	17.1	2.0	0.0088	16.8	2.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
zf-C3HC4_3	PF13920.6	gi|227827956|ref|YP_002829736.1|	-	0.018	14.9	1.1	0.025	14.4	1.1	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
TF_Zn_Ribbon	PF08271.12	gi|227827956|ref|YP_002829736.1|	-	0.023	14.2	3.7	0.13	11.8	0.4	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
DNA_ligase_ZBD	PF03119.16	gi|227827956|ref|YP_002829736.1|	-	0.024	14.6	0.1	0.048	13.7	0.0	1.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TackOD1	PF18551.1	gi|227827956|ref|YP_002829736.1|	-	0.043	13.5	1.1	0.053	13.2	1.1	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
NRDD	PF13597.6	gi|227827956|ref|YP_002829736.1|	-	0.048	12.4	0.8	0.054	12.3	0.8	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zinc_ribbon_2	PF13240.6	gi|227827956|ref|YP_002829736.1|	-	0.059	13.1	2.6	0.088	12.6	2.6	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227827956|ref|YP_002829736.1|	-	0.19	11.9	4.3	0.8	9.9	4.3	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|227827956|ref|YP_002829736.1|	-	0.68	10.2	3.3	2	8.7	3.5	1.7	1	1	1	2	2	2	0	zinc-ribbon
S1	PF00575.23	gi|227827957|ref|YP_002829737.1|	-	6.3e-17	61.7	3.1	1.2e-16	60.8	3.1	1.4	1	0	0	1	1	1	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.17	gi|227827957|ref|YP_002829737.1|	-	1.7e-16	60.4	0.0	3.5e-16	59.3	0.0	1.6	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
RNA_pol_Rbc25	PF08292.12	gi|227827957|ref|YP_002829737.1|	-	0.0088	16.3	0.0	0.015	15.5	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	Rpc25
PIN_9	PF18477.1	gi|227827958|ref|YP_002829738.1|	-	6.1e-11	42.7	0.0	8.3e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	PIN	like	domain
PIN	PF01850.21	gi|227827958|ref|YP_002829738.1|	-	8.8e-07	29.5	1.1	1.1e-06	29.1	1.1	1.2	1	0	0	1	1	1	1	PIN	domain
PIN_4	PF13638.6	gi|227827958|ref|YP_002829738.1|	-	0.00024	21.4	0.8	0.0052	17.1	0.8	2.0	1	1	0	1	1	1	1	PIN	domain
GTP_EFTU	PF00009.27	gi|227827959|ref|YP_002829739.1|	-	1.5e-30	106.2	0.3	6.5e-30	104.1	0.3	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|227827959|ref|YP_002829739.1|	-	2.6e-29	101.3	2.4	5.1e-29	100.4	1.7	1.9	2	0	0	2	2	2	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|227827959|ref|YP_002829739.1|	-	6.2e-09	36.1	0.7	8.3e-08	32.5	0.1	2.7	2	1	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|227827959|ref|YP_002829739.1|	-	6.8e-05	22.9	0.0	0.00013	22.0	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|227827959|ref|YP_002829739.1|	-	7.8e-05	22.6	1.1	0.0022	17.9	0.0	2.6	3	0	0	3	3	3	1	RsgA	GTPase
PduV-EutP	PF10662.9	gi|227827959|ref|YP_002829739.1|	-	0.001	18.8	1.6	1.2	8.9	0.1	2.7	3	0	0	3	3	3	2	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1_Xtn	PF16897.5	gi|227827959|ref|YP_002829739.1|	-	0.0022	18.0	0.1	0.0049	16.9	0.1	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
MeaB	PF03308.16	gi|227827959|ref|YP_002829739.1|	-	0.012	14.7	0.2	0.12	11.4	0.0	2.1	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ProQ_C	PF17516.2	gi|227827959|ref|YP_002829739.1|	-	0.026	14.0	0.6	0.18	11.3	0.0	2.6	3	0	0	3	3	3	0	ProQ	C-terminal	domain
NRDD	PF13597.6	gi|227827959|ref|YP_002829739.1|	-	0.051	12.3	0.2	0.6	8.8	0.1	2.0	2	0	0	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
FeoB_N	PF02421.18	gi|227827959|ref|YP_002829739.1|	-	0.085	12.4	0.5	6.5	6.3	0.0	2.6	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
cobW	PF02492.19	gi|227827959|ref|YP_002829739.1|	-	0.1	12.1	0.1	6.5	6.3	0.0	2.3	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Ribosomal_S6e	PF01092.19	gi|227827960|ref|YP_002829740.1|	-	1.3e-29	102.7	1.3	6.4e-28	97.2	0.0	2.3	2	1	0	2	2	2	2	Ribosomal	protein	S6e
eIF3g	PF12353.8	gi|227827960|ref|YP_002829740.1|	-	0.1	13.0	2.0	0.14	12.6	0.7	1.8	1	1	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	G
CbiX	PF01903.17	gi|227827961|ref|YP_002829741.1|	-	2.8e-27	95.1	0.0	3.2e-27	94.9	0.0	1.0	1	0	0	1	1	1	1	CbiX
CbiK	PF06180.11	gi|227827961|ref|YP_002829741.1|	-	9.8e-06	25.1	0.0	1.1e-05	24.9	0.0	1.0	1	0	0	1	1	1	1	Cobalt	chelatase	(CbiK)
Ribosomal_S13_N	PF08069.12	gi|227827962|ref|YP_002829742.1|	-	1.5e-23	82.5	0.2	9.6e-23	80.0	0.1	2.1	2	0	0	2	2	2	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|227827962|ref|YP_002829742.1|	-	1.5e-12	47.5	0.0	2e-12	47.1	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S15
YozD	PF14162.6	gi|227827962|ref|YP_002829742.1|	-	0.11	12.8	0.0	0.24	11.7	0.0	1.6	1	0	0	1	1	1	0	YozD-like	protein
Meth_synt_2	PF01717.18	gi|227827963|ref|YP_002829743.1|	-	2.5e-64	217.6	0.0	2.9e-64	217.4	0.0	1.0	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.12	gi|227827963|ref|YP_002829743.1|	-	9.9e-16	58.1	0.6	4.6e-15	55.9	0.7	1.8	2	0	0	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.17	gi|227827963|ref|YP_002829743.1|	-	0.00031	20.0	0.0	0.0005	19.3	0.0	1.3	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
BLYB	PF05289.11	gi|227827963|ref|YP_002829743.1|	-	0.055	13.7	2.0	0.27	11.5	0.4	2.3	2	0	0	2	2	2	0	Borrelia	hemolysin	accessory	protein
Phage_sheath_1C	PF17482.2	gi|227827963|ref|YP_002829743.1|	-	0.062	13.3	0.3	42	4.2	0.0	3.2	3	0	0	3	3	3	0	Phage	tail	sheath	C-terminal	domain
Meth_synt_1	PF08267.12	gi|227827964|ref|YP_002829744.1|	-	5e-22	78.8	1.1	2.2e-20	73.4	0.5	2.1	2	0	0	2	2	2	2	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.18	gi|227827964|ref|YP_002829744.1|	-	7.3e-06	25.5	0.0	3.5e-05	23.2	0.0	2.0	2	1	0	2	2	2	1	Cobalamin-independent	synthase,	Catalytic	domain
PCNA_N	PF00705.18	gi|227827965|ref|YP_002829745.1|	-	1.2e-15	57.3	1.7	2.5e-15	56.3	0.6	1.9	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|227827965|ref|YP_002829745.1|	-	8.3e-11	42.2	1.1	3.5e-08	33.7	0.1	2.5	2	1	0	2	2	2	2	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.16	gi|227827965|ref|YP_002829745.1|	-	4.8e-06	25.8	1.7	0.0011	18.1	0.2	2.1	1	1	1	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
Rad9	PF04139.13	gi|227827965|ref|YP_002829745.1|	-	2.6e-05	23.8	1.9	4.2e-05	23.1	1.9	1.5	1	1	0	1	1	1	1	Rad9
DNA_pol3_beta_3	PF02768.15	gi|227827965|ref|YP_002829745.1|	-	3.5e-05	23.6	3.5	0.027	14.3	1.1	2.5	2	1	0	2	2	2	2	DNA	polymerase	III	beta	subunit,	C-terminal	domain
Hus1	PF04005.12	gi|227827965|ref|YP_002829745.1|	-	0.0073	15.5	0.1	0.017	14.3	0.1	1.5	1	0	0	1	1	1	1	Hus1-like	protein
ocr	PF08684.10	gi|227827965|ref|YP_002829745.1|	-	0.028	14.9	0.8	0.11	13.0	0.1	2.2	2	1	0	2	2	2	0	DNA	mimic	ocr
RNA_pol_A_bac	PF01000.26	gi|227827965|ref|YP_002829745.1|	-	0.072	13.5	0.2	0.25	11.7	0.3	1.9	2	0	0	2	2	2	0	RNA	polymerase	Rpb3/RpoA	insert	domain
GATase_3	PF07685.14	gi|227827966|ref|YP_002829746.1|	-	5.5e-42	143.6	0.1	8.1e-42	143.0	0.1	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
AAA_26	PF13500.6	gi|227827966|ref|YP_002829746.1|	-	1.4e-14	54.4	0.6	9.3e-10	38.7	0.1	2.5	2	0	0	2	2	2	2	AAA	domain
CbiA	PF01656.23	gi|227827966|ref|YP_002829746.1|	-	1.5e-13	50.9	0.0	3.8e-13	49.6	0.0	1.7	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF2208	PF09973.9	gi|227827967|ref|YP_002829747.1|	-	1.1e-69	234.6	18.9	1.3e-69	234.4	18.9	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2208)
EMC3_TMCO1	PF01956.16	gi|227827967|ref|YP_002829747.1|	-	5.9e-06	26.1	1.6	5.9e-06	26.1	1.6	2.2	1	1	1	2	2	2	1	Integral	membrane	protein	EMC3/TMCO1-like
ApoC-I	PF04691.12	gi|227827967|ref|YP_002829747.1|	-	0.16	11.9	1.0	0.66	9.9	0.2	2.0	2	0	0	2	2	2	0	Apolipoprotein	C-I	(ApoC-1)
DHBP_synthase	PF00926.19	gi|227827968|ref|YP_002829748.1|	-	2e-47	161.2	0.0	2.5e-47	160.9	0.0	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
HTH_38	PF13936.6	gi|227827968|ref|YP_002829748.1|	-	0.07	12.9	0.0	0.26	11.1	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
DMRL_synthase	PF00885.19	gi|227827969|ref|YP_002829749.1|	-	1e-10	41.6	0.0	1.2e-10	41.4	0.0	1.1	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
FUN14	PF04930.15	gi|227827969|ref|YP_002829749.1|	-	0.022	15.1	0.2	0.031	14.7	0.2	1.3	1	0	0	1	1	1	0	FUN14	family
DMRL_synthase	PF00885.19	gi|227827970|ref|YP_002829750.1|	-	6.6e-37	126.5	1.3	7.7e-37	126.3	1.3	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
UPF0669	PF17065.5	gi|227827970|ref|YP_002829750.1|	-	0.0067	16.2	0.0	0.0098	15.7	0.0	1.3	1	0	0	1	1	1	1	Putative	cytokine,	C6ORF120
GCH_III	PF05165.12	gi|227827971|ref|YP_002829751.1|	-	5.4e-37	127.4	0.0	8e-37	126.8	0.0	1.3	1	1	0	1	1	1	1	GTP	cyclohydrolase	III
mCpol	PF18182.1	gi|227827971|ref|YP_002829751.1|	-	0.00088	19.6	0.5	0.025	14.9	0.2	2.3	1	1	1	2	2	2	1	minimal	CRISPR	polymerase	domain
Amidohydro_1	PF01979.20	gi|227827972|ref|YP_002829752.1|	-	5.2e-19	68.8	0.0	6e-17	62.0	0.0	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
DUF5601	PF18151.1	gi|227827972|ref|YP_002829752.1|	-	0.036	14.4	0.0	0.1	12.9	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5601)
Amidohydro_3	PF07969.11	gi|227827972|ref|YP_002829752.1|	-	0.053	13.0	0.0	7.1	6.0	0.0	2.1	2	0	0	2	2	2	0	Amidohydrolase	family
CARD_2	PF16739.5	gi|227827972|ref|YP_002829752.1|	-	0.19	11.7	0.4	0.94	9.5	0.0	2.2	2	1	0	2	2	2	0	Caspase	recruitment	domain
PCNA_N	PF00705.18	gi|227827973|ref|YP_002829753.1|	-	3.8e-06	26.6	1.0	3e-05	23.7	0.1	2.2	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad9	PF04139.13	gi|227827973|ref|YP_002829753.1|	-	0.00027	20.5	1.0	0.00032	20.2	1.0	1.0	1	0	0	1	1	1	1	Rad9
DUF1735	PF08522.10	gi|227827973|ref|YP_002829753.1|	-	0.00091	19.8	1.0	0.0018	18.9	0.9	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1735)
Hus1	PF04005.12	gi|227827973|ref|YP_002829753.1|	-	0.0037	16.4	0.2	0.0068	15.6	0.1	1.5	1	1	0	1	1	1	1	Hus1-like	protein
MazE_antitoxin	PF04014.18	gi|227827973|ref|YP_002829753.1|	-	0.44	10.5	1.9	1.1	9.3	0.0	2.5	3	0	0	3	3	3	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
RNA_pol_Rpo13	PF12136.8	gi|227827974|ref|YP_002829754.1|	-	4.2e-17	61.8	15.0	9.7e-16	57.4	15.0	2.3	1	1	0	1	1	1	1	RNA	polymerase	Rpo13	subunit	HTH	domain
Merozoite_SPAM	PF07133.11	gi|227827974|ref|YP_002829754.1|	-	6.1	6.8	22.5	1.3e+02	2.4	22.5	2.0	1	1	0	1	1	1	0	Merozoite	surface	protein	(SPAM)
DUF87	PF01935.17	gi|227827975|ref|YP_002829755.1|	-	2.2e-10	41.1	0.7	4.5e-10	40.0	0.7	1.5	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
ABC_tran	PF00005.27	gi|227827975|ref|YP_002829755.1|	-	0.0002	21.9	0.0	0.00045	20.8	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|227827975|ref|YP_002829755.1|	-	0.0003	21.1	0.0	0.58	10.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_10	PF12846.7	gi|227827975|ref|YP_002829755.1|	-	0.00038	19.5	0.1	0.16	10.8	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
TrwB_AAD_bind	PF10412.9	gi|227827975|ref|YP_002829755.1|	-	0.00048	19.2	0.0	0.65	8.8	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Pox_A32	PF04665.12	gi|227827975|ref|YP_002829755.1|	-	0.0029	17.1	0.2	0.22	11.0	0.1	2.3	2	0	0	2	2	2	1	Poxvirus	A32	protein
AAA_29	PF13555.6	gi|227827975|ref|YP_002829755.1|	-	0.014	15.1	0.2	0.014	15.1	0.2	1.8	2	0	0	2	2	1	0	P-loop	containing	region	of	AAA	domain
TraG-D_C	PF12696.7	gi|227827975|ref|YP_002829755.1|	-	0.015	15.3	0.0	0.063	13.3	0.0	2.0	2	1	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
AAA_18	PF13238.6	gi|227827975|ref|YP_002829755.1|	-	0.024	15.2	0.0	0.07	13.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|227827975|ref|YP_002829755.1|	-	0.028	14.4	0.0	0.082	12.8	0.0	1.7	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|227827975|ref|YP_002829755.1|	-	0.036	13.2	0.0	0.067	12.4	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
G-alpha	PF00503.20	gi|227827975|ref|YP_002829755.1|	-	0.037	13.2	0.5	0.17	11.0	0.0	1.9	2	0	0	2	2	2	0	G-protein	alpha	subunit
AAA_24	PF13479.6	gi|227827975|ref|YP_002829755.1|	-	0.037	13.7	0.0	0.067	12.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AIG1	PF04548.16	gi|227827975|ref|YP_002829755.1|	-	0.054	12.8	0.1	0.099	11.9	0.1	1.4	1	0	0	1	1	1	0	AIG1	family
FtsK_SpoIIIE	PF01580.18	gi|227827975|ref|YP_002829755.1|	-	0.062	12.6	0.1	0.11	11.9	0.1	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF815	PF05673.13	gi|227827975|ref|YP_002829755.1|	-	0.062	12.4	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
RsgA_GTPase	PF03193.16	gi|227827975|ref|YP_002829755.1|	-	0.07	13.0	0.1	0.17	11.8	0.1	1.6	1	0	0	1	1	1	0	RsgA	GTPase
IstB_IS21	PF01695.17	gi|227827975|ref|YP_002829755.1|	-	0.076	12.7	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_32	PF13654.6	gi|227827975|ref|YP_002829755.1|	-	0.081	11.7	0.0	0.13	11.0	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|227827975|ref|YP_002829755.1|	-	0.11	12.6	0.1	0.33	11.1	0.1	1.8	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_23	PF13476.6	gi|227827975|ref|YP_002829755.1|	-	0.12	12.9	2.3	0.13	12.7	0.5	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|227827975|ref|YP_002829755.1|	-	0.12	11.9	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
T2SSE	PF00437.20	gi|227827975|ref|YP_002829755.1|	-	0.16	11.0	0.0	0.33	10.0	0.0	1.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
SMC_N	PF02463.19	gi|227827975|ref|YP_002829755.1|	-	0.37	10.2	1.0	0.64	9.4	1.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
DEAD	PF00270.29	gi|227827976|ref|YP_002829756.1|	-	5.2e-35	120.8	0.0	1.7e-34	119.1	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|227827976|ref|YP_002829756.1|	-	1.2e-23	83.5	2.7	2.3e-20	73.0	0.8	3.3	2	1	1	3	3	3	2	Helicase	conserved	C-terminal	domain
DEAD_assoc	PF08494.11	gi|227827976|ref|YP_002829756.1|	-	8.6e-12	45.2	0.0	4.6e-11	42.9	0.0	2.2	1	1	0	1	1	1	1	DEAD/H	associated
ResIII	PF04851.15	gi|227827976|ref|YP_002829756.1|	-	0.00012	22.1	0.0	0.0004	20.4	0.0	1.9	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|227827976|ref|YP_002829756.1|	-	0.0044	17.4	0.0	0.014	15.8	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
UvrD-helicase	PF00580.21	gi|227827976|ref|YP_002829756.1|	-	0.095	12.2	0.0	0.23	11.0	0.0	1.8	1	1	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
Ribosomal_L14e	PF01929.17	gi|227827977|ref|YP_002829757.1|	-	0.00083	19.8	0.1	0.0012	19.3	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L14
KOW	PF00467.29	gi|227827977|ref|YP_002829757.1|	-	0.0032	17.4	1.4	0.006	16.5	1.4	1.5	1	0	0	1	1	1	1	KOW	motif
XisI	PF08869.11	gi|227827977|ref|YP_002829757.1|	-	0.0033	17.7	0.1	0.0041	17.5	0.1	1.1	1	0	0	1	1	1	1	XisI	protein
TruB_N	PF01509.18	gi|227827978|ref|YP_002829758.1|	-	4.4e-27	95.3	0.5	1.9e-23	83.5	0.5	3.3	1	1	0	1	1	1	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
TruB_C_2	PF16198.5	gi|227827978|ref|YP_002829758.1|	-	8.7e-24	83.5	0.1	2.2e-23	82.1	0.1	1.7	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
PUA	PF01472.20	gi|227827978|ref|YP_002829758.1|	-	3.4e-19	68.6	0.4	2.4e-18	65.8	0.1	2.1	2	0	0	2	2	2	1	PUA	domain
DKCLD	PF08068.12	gi|227827978|ref|YP_002829758.1|	-	1.4e-15	57.1	0.3	3.8e-15	55.7	0.3	1.7	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
UPF0113	PF03657.13	gi|227827978|ref|YP_002829758.1|	-	0.015	15.6	0.6	0.11	12.7	0.1	2.3	2	0	0	2	2	2	0	UPF0113	PUA	domain
DUF4172	PF13776.6	gi|227827978|ref|YP_002829758.1|	-	0.13	12.6	0.0	0.35	11.2	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4172)
MTS	PF05175.14	gi|227827979|ref|YP_002829759.1|	-	4.8e-36	123.8	0.0	5.5e-36	123.7	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|227827979|ref|YP_002829759.1|	-	1.2e-11	44.6	0.0	2.3e-11	43.7	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|227827979|ref|YP_002829759.1|	-	8.6e-10	38.5	0.0	1.1e-09	38.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.7	gi|227827979|ref|YP_002829759.1|	-	7.1e-08	32.5	0.0	1.1e-07	31.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227827979|ref|YP_002829759.1|	-	2.9e-07	31.1	0.0	4.6e-07	30.5	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|227827979|ref|YP_002829759.1|	-	3.2e-06	27.0	0.5	6.9e-06	26.0	0.2	1.6	1	1	1	2	2	2	1	Met-10+	like-protein
Methyltransf_15	PF09445.10	gi|227827979|ref|YP_002829759.1|	-	2.8e-05	23.8	0.1	3.3e-05	23.5	0.1	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_12	PF08242.12	gi|227827979|ref|YP_002829759.1|	-	4.3e-05	24.2	0.0	7.4e-05	23.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|227827979|ref|YP_002829759.1|	-	0.00021	21.1	0.1	0.00041	20.1	0.1	1.6	1	1	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_4	PF02390.17	gi|227827979|ref|YP_002829759.1|	-	0.0003	20.3	0.1	0.00052	19.5	0.1	1.4	2	0	0	2	2	2	1	Putative	methyltransferase
GidB	PF02527.15	gi|227827979|ref|YP_002829759.1|	-	0.0003	20.2	0.2	0.00056	19.3	0.2	1.4	1	1	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Cons_hypoth95	PF03602.15	gi|227827979|ref|YP_002829759.1|	-	0.00033	20.4	0.0	0.00037	20.2	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_11	PF08241.12	gi|227827979|ref|YP_002829759.1|	-	0.0011	19.6	0.0	0.0027	18.3	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227827979|ref|YP_002829759.1|	-	0.003	17.4	0.0	0.0034	17.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|227827979|ref|YP_002829759.1|	-	0.005	16.3	0.2	0.016	14.6	0.1	1.8	2	0	0	2	2	2	1	Tellurite	resistance	protein	TehB
N6_Mtase	PF02384.16	gi|227827979|ref|YP_002829759.1|	-	0.0064	15.8	0.0	0.0069	15.7	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_2	PF00891.18	gi|227827979|ref|YP_002829759.1|	-	0.0069	15.7	0.0	0.01	15.2	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
TRM	PF02005.16	gi|227827979|ref|YP_002829759.1|	-	0.025	13.7	0.0	0.031	13.4	0.0	1.2	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
UPF0020	PF01170.18	gi|227827979|ref|YP_002829759.1|	-	0.029	14.0	0.0	0.044	13.5	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
CMAS	PF02353.20	gi|227827979|ref|YP_002829759.1|	-	0.05	12.9	0.0	0.059	12.6	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_32	PF13679.6	gi|227827979|ref|YP_002829759.1|	-	0.091	12.7	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Helicase_RecD	PF05127.14	gi|227827980|ref|YP_002829760.1|	-	9.3e-51	172.2	0.0	1.7e-50	171.3	0.0	1.5	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|227827980|ref|YP_002829760.1|	-	3.2e-34	118.3	0.1	1.9e-24	86.3	0.0	2.3	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|227827980|ref|YP_002829760.1|	-	5.2e-19	68.0	0.0	1.1e-18	67.0	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_7	PF13508.7	gi|227827980|ref|YP_002829760.1|	-	1.8e-06	28.3	0.0	6.4e-06	26.5	0.0	2.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|227827980|ref|YP_002829760.1|	-	5.2e-05	23.5	0.0	0.00012	22.3	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
AAA_30	PF13604.6	gi|227827980|ref|YP_002829760.1|	-	8e-05	22.4	0.0	0.00019	21.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|227827980|ref|YP_002829760.1|	-	0.00011	22.4	0.1	0.0008	19.7	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
Acetyltransf_10	PF13673.7	gi|227827980|ref|YP_002829760.1|	-	0.0066	16.4	0.0	0.015	15.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|227827980|ref|YP_002829760.1|	-	0.036	14.2	0.0	0.24	11.5	0.0	2.2	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
AAA_19	PF13245.6	gi|227827980|ref|YP_002829760.1|	-	0.1	13.0	0.0	0.48	10.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ADIP	PF11559.8	gi|227827981|ref|YP_002829761.1|	-	1.3e-09	38.3	4.3	7.6e-06	26.1	0.2	2.2	1	1	1	2	2	2	2	Afadin-	and	alpha	-actinin-Binding
DivIC	PF04977.15	gi|227827981|ref|YP_002829761.1|	-	7.1e-08	32.1	0.8	0.096	12.5	0.0	3.3	1	1	2	3	3	3	2	Septum	formation	initiator
CENP-F_leu_zip	PF10473.9	gi|227827981|ref|YP_002829761.1|	-	9.9e-08	32.1	1.4	1.8e-05	24.8	0.7	2.1	1	1	1	2	2	2	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
FlaC_arch	PF05377.11	gi|227827981|ref|YP_002829761.1|	-	1.9e-07	31.4	7.0	0.0076	16.6	1.6	3.9	1	1	2	3	3	3	2	Flagella	accessory	protein	C	(FlaC)
Baculo_PEP_C	PF04513.12	gi|227827981|ref|YP_002829761.1|	-	3.4e-07	30.4	25.8	3.4e-07	30.4	25.8	2.7	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
SHE3	PF17078.5	gi|227827981|ref|YP_002829761.1|	-	4e-07	30.0	1.1	5.5e-07	29.5	1.1	1.1	1	0	0	1	1	1	1	SWI5-dependent	HO	expression	protein	3
TolA_bind_tri	PF16331.5	gi|227827981|ref|YP_002829761.1|	-	6e-07	29.4	1.0	0.0015	18.5	0.6	3.1	1	1	2	3	3	3	1	TolA	binding	protein	trimerisation
TMF_DNA_bd	PF12329.8	gi|227827981|ref|YP_002829761.1|	-	6.1e-07	29.3	8.0	0.0021	18.0	3.4	2.2	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	DNA	binding
ATG16	PF08614.11	gi|227827981|ref|YP_002829761.1|	-	1.6e-06	28.5	1.6	2.5e-06	27.9	1.6	1.2	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
LPP	PF04728.13	gi|227827981|ref|YP_002829761.1|	-	1.7e-06	28.3	17.6	0.047	14.1	1.1	5.0	2	1	4	6	6	5	3	Lipoprotein	leucine-zipper
DUF3450	PF11932.8	gi|227827981|ref|YP_002829761.1|	-	1.8e-06	27.4	2.1	0.0065	15.8	1.2	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3450)
IFT57	PF10498.9	gi|227827981|ref|YP_002829761.1|	-	1.9e-06	27.1	0.9	3e-06	26.5	0.9	1.3	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
MscS_porin	PF12795.7	gi|227827981|ref|YP_002829761.1|	-	2.8e-06	27.1	5.3	4.9e-06	26.3	5.3	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
TMF_TATA_bd	PF12325.8	gi|227827981|ref|YP_002829761.1|	-	2.8e-06	27.5	1.4	0.00071	19.8	0.9	2.3	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	TATA	binding
SlyX	PF04102.12	gi|227827981|ref|YP_002829761.1|	-	4.1e-06	27.3	0.3	0.0096	16.5	0.1	2.4	1	1	1	2	2	2	1	SlyX
AAA_13	PF13166.6	gi|227827981|ref|YP_002829761.1|	-	6.3e-06	25.1	1.9	8.4e-06	24.7	1.9	1.1	1	0	0	1	1	1	1	AAA	domain
DUF4349	PF14257.6	gi|227827981|ref|YP_002829761.1|	-	9.7e-06	25.2	3.1	4.9e-05	22.9	1.4	2.4	2	1	1	3	3	2	1	Domain	of	unknown	function	(DUF4349)
BRE1	PF08647.11	gi|227827981|ref|YP_002829761.1|	-	1.4e-05	25.1	10.0	0.00032	20.7	1.5	1.8	1	1	1	2	2	2	2	BRE1	E3	ubiquitin	ligase
NPV_P10	PF05531.12	gi|227827981|ref|YP_002829761.1|	-	1.4e-05	25.5	7.7	0.053	14.0	0.3	2.8	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
BST2	PF16716.5	gi|227827981|ref|YP_002829761.1|	-	1.7e-05	25.3	4.8	0.0012	19.4	1.7	2.2	1	1	1	2	2	2	2	Bone	marrow	stromal	antigen	2
Spc7	PF08317.11	gi|227827981|ref|YP_002829761.1|	-	1.9e-05	23.7	1.1	4e-05	22.6	1.1	1.4	1	1	0	1	1	1	1	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|227827981|ref|YP_002829761.1|	-	2.1e-05	24.6	3.8	0.00061	19.8	0.6	2.7	2	1	1	3	3	2	1	Protein	of	unknown	function	(DUF1664)
GIT_CC	PF16559.5	gi|227827981|ref|YP_002829761.1|	-	2.4e-05	24.1	7.5	0.0019	18.0	1.7	2.6	2	0	0	2	2	2	1	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
KASH_CCD	PF14662.6	gi|227827981|ref|YP_002829761.1|	-	3.3e-05	23.8	1.0	4.9e-05	23.2	1.0	1.2	1	0	0	1	1	1	1	Coiled-coil	region	of	CCDC155	or	KASH
Laminin_II	PF06009.12	gi|227827981|ref|YP_002829761.1|	-	3.7e-05	23.7	8.6	0.0046	17.0	4.8	2.2	1	1	1	2	2	2	2	Laminin	Domain	II
BLOC1_2	PF10046.9	gi|227827981|ref|YP_002829761.1|	-	3.9e-05	23.9	5.0	0.047	14.0	4.3	2.9	1	1	2	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF5082	PF16888.5	gi|227827981|ref|YP_002829761.1|	-	7e-05	23.1	8.7	0.077	13.3	3.0	2.9	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF5082)
FPP	PF05911.11	gi|227827981|ref|YP_002829761.1|	-	7e-05	21.2	0.3	9.2e-05	20.8	0.3	1.0	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
Rab5-bind	PF09311.11	gi|227827981|ref|YP_002829761.1|	-	7.1e-05	22.3	0.4	0.0001	21.8	0.4	1.1	1	0	0	1	1	1	1	Rabaptin-like	protein
EzrA	PF06160.12	gi|227827981|ref|YP_002829761.1|	-	7.3e-05	21.1	0.8	7.3e-05	21.1	0.8	1.5	2	0	0	2	2	1	1	Septation	ring	formation	regulator,	EzrA
APG6_N	PF17675.1	gi|227827981|ref|YP_002829761.1|	-	7.5e-05	23.3	0.0	0.00011	22.7	0.0	1.1	1	0	0	1	1	1	1	Apg6	coiled-coil	region
Cast	PF10174.9	gi|227827981|ref|YP_002829761.1|	-	9.6e-05	20.8	2.3	0.00015	20.2	2.3	1.2	1	0	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
TPR_MLP1_2	PF07926.12	gi|227827981|ref|YP_002829761.1|	-	0.00011	22.2	2.3	0.0044	17.1	2.8	2.1	1	1	1	2	2	2	2	TPR/MLP1/MLP2-like	protein
DUF4795	PF16043.5	gi|227827981|ref|YP_002829761.1|	-	0.0002	21.1	3.8	0.026	14.2	1.2	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4795)
DUF2730	PF10805.8	gi|227827981|ref|YP_002829761.1|	-	0.00021	21.3	3.7	0.004	17.2	0.3	3.1	1	1	2	3	3	2	1	Protein	of	unknown	function	(DUF2730)
Filament	PF00038.21	gi|227827981|ref|YP_002829761.1|	-	0.00024	20.8	0.6	0.0012	18.5	0.6	1.6	1	1	0	1	1	1	1	Intermediate	filament	protein
ABC_tran_CTD	PF16326.5	gi|227827981|ref|YP_002829761.1|	-	0.00025	21.2	0.0	0.071	13.4	0.1	2.3	1	1	1	2	2	2	2	ABC	transporter	C-terminal	domain
DUF4988	PF16378.5	gi|227827981|ref|YP_002829761.1|	-	0.00028	20.6	6.6	0.34	10.6	2.2	3.4	1	1	2	3	3	3	1	Domain	of	unknown	function
GAS	PF13851.6	gi|227827981|ref|YP_002829761.1|	-	0.00028	20.3	0.6	0.00053	19.4	0.6	1.4	1	1	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
Phage_GP20	PF06810.11	gi|227827981|ref|YP_002829761.1|	-	0.0003	20.6	1.9	0.025	14.4	0.8	2.1	1	1	1	2	2	2	1	Phage	minor	structural	protein	GP20
FlxA	PF14282.6	gi|227827981|ref|YP_002829761.1|	-	0.00037	20.5	10.3	0.0047	16.9	2.1	2.4	1	1	1	2	2	2	1	FlxA-like	protein
XhlA	PF10779.9	gi|227827981|ref|YP_002829761.1|	-	0.00039	20.6	2.7	0.46	10.7	0.0	2.8	2	0	0	2	2	2	1	Haemolysin	XhlA
Tektin	PF03148.14	gi|227827981|ref|YP_002829761.1|	-	0.00047	19.0	2.3	0.0089	14.8	2.3	2.0	1	1	0	1	1	1	1	Tektin	family
Prefoldin_2	PF01920.20	gi|227827981|ref|YP_002829761.1|	-	0.00049	20.0	1.1	0.58	10.1	0.1	2.7	1	1	2	3	3	3	1	Prefoldin	subunit
CarboxypepD_reg	PF13620.6	gi|227827981|ref|YP_002829761.1|	-	0.00051	20.3	1.2	0.00051	20.3	1.2	2.6	2	1	0	2	2	1	1	Carboxypeptidase	regulatory-like	domain
Mod_r	PF07200.13	gi|227827981|ref|YP_002829761.1|	-	0.00077	19.6	1.0	0.0012	19.0	1.0	1.2	1	0	0	1	1	1	1	Modifier	of	rudimentary	(Mod(r))	protein
bZIP_1	PF00170.21	gi|227827981|ref|YP_002829761.1|	-	0.00085	19.4	5.6	3.3	7.9	0.1	3.2	1	1	2	3	3	3	0	bZIP	transcription	factor
PspA_IM30	PF04012.12	gi|227827981|ref|YP_002829761.1|	-	0.00086	19.0	0.9	1.2	8.7	0.3	2.0	1	1	1	2	2	2	0	PspA/IM30	family
FAM76	PF16046.5	gi|227827981|ref|YP_002829761.1|	-	0.00088	18.7	0.1	0.0012	18.2	0.1	1.2	1	0	0	1	1	1	1	FAM76	protein
Seryl_tRNA_N	PF02403.22	gi|227827981|ref|YP_002829761.1|	-	0.0011	19.2	3.4	0.013	15.7	3.4	2.1	1	1	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
DUF4201	PF13870.6	gi|227827981|ref|YP_002829761.1|	-	0.0012	18.6	1.2	0.0061	16.3	1.0	1.8	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4201)
Cep57_MT_bd	PF06657.13	gi|227827981|ref|YP_002829761.1|	-	0.0013	19.2	0.0	0.41	11.1	0.0	2.6	1	1	1	2	2	2	1	Centrosome	microtubule-binding	domain	of	Cep57
Fib_alpha	PF08702.10	gi|227827981|ref|YP_002829761.1|	-	0.0015	18.7	4.3	0.0092	16.2	4.5	1.8	1	1	1	2	2	2	2	Fibrinogen	alpha/beta	chain	family
HAP1_N	PF04849.13	gi|227827981|ref|YP_002829761.1|	-	0.0015	17.8	0.9	0.0033	16.7	0.9	1.4	1	1	0	1	1	1	1	HAP1	N-terminal	conserved	region
COG5	PF10392.9	gi|227827981|ref|YP_002829761.1|	-	0.0016	18.6	7.1	0.02	15.1	7.3	2.1	1	1	1	2	2	2	1	Golgi	transport	complex	subunit	5
HemX	PF04375.14	gi|227827981|ref|YP_002829761.1|	-	0.0016	17.8	4.1	0.022	14.0	1.2	2.3	1	1	1	2	2	2	2	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
CLZ	PF16526.5	gi|227827981|ref|YP_002829761.1|	-	0.0017	18.7	1.0	2.6	8.5	0.1	3.0	1	1	2	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
FliJ	PF02050.16	gi|227827981|ref|YP_002829761.1|	-	0.0017	18.6	2.2	0.024	14.9	0.3	1.8	1	1	1	2	2	2	2	Flagellar	FliJ	protein
Fez1	PF06818.15	gi|227827981|ref|YP_002829761.1|	-	0.0017	18.8	0.2	0.0025	18.3	0.2	1.1	1	0	0	1	1	1	1	Fez1
Snapin_Pallidin	PF14712.6	gi|227827981|ref|YP_002829761.1|	-	0.0017	18.7	2.2	0.23	11.9	0.9	2.4	1	1	1	2	2	2	2	Snapin/Pallidin
Nup54	PF13874.6	gi|227827981|ref|YP_002829761.1|	-	0.0019	18.3	0.3	0.0026	17.9	0.3	1.2	1	0	0	1	1	1	1	Nucleoporin	complex	subunit	54
TRAF_BIRC3_bd	PF16673.5	gi|227827981|ref|YP_002829761.1|	-	0.0019	18.0	0.1	0.43	10.4	0.1	2.4	1	1	2	3	3	3	1	TNF	receptor-associated	factor	BIRC3	binding	domain
Lebercilin	PF15619.6	gi|227827981|ref|YP_002829761.1|	-	0.0021	17.8	0.3	0.0035	17.0	0.3	1.3	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Not3	PF04065.15	gi|227827981|ref|YP_002829761.1|	-	0.0021	17.5	1.5	0.0053	16.2	1.4	1.6	1	1	1	2	2	2	1	Not1	N-terminal	domain,	CCR4-Not	complex	component
MbeD_MobD	PF04899.12	gi|227827981|ref|YP_002829761.1|	-	0.0021	18.1	5.2	0.14	12.3	0.8	4.1	2	1	2	4	4	3	1	MbeD/MobD	like
DUF4527	PF15030.6	gi|227827981|ref|YP_002829761.1|	-	0.0022	17.5	0.1	0.0039	16.7	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4527)
Csm1_N	PF18504.1	gi|227827981|ref|YP_002829761.1|	-	0.0022	18.3	3.3	1.3	9.4	0.2	3.7	2	1	2	4	4	3	0	Csm1	N-terminal	domain
Myosin_tail_1	PF01576.19	gi|227827981|ref|YP_002829761.1|	-	0.0026	15.7	0.0	0.0035	15.2	0.0	1.0	1	0	0	1	1	1	1	Myosin	tail
DUF4763	PF15960.5	gi|227827981|ref|YP_002829761.1|	-	0.0027	17.1	2.2	0.29	10.4	0.4	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4763)
DUF4140	PF13600.6	gi|227827981|ref|YP_002829761.1|	-	0.0027	18.1	1.1	0.53	10.7	0.0	3.2	2	1	1	3	3	2	1	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4618	PF15397.6	gi|227827981|ref|YP_002829761.1|	-	0.0027	17.2	1.3	0.038	13.4	1.4	2.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4618)
Atg14	PF10186.9	gi|227827981|ref|YP_002829761.1|	-	0.0029	16.7	1.6	0.0029	16.7	1.6	2.1	2	1	0	2	2	2	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF812	PF05667.11	gi|227827981|ref|YP_002829761.1|	-	0.003	16.5	0.3	0.0046	15.9	0.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
DUF724	PF05266.14	gi|227827981|ref|YP_002829761.1|	-	0.003	17.4	0.1	0.0058	16.5	0.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF724)
TssO	PF17561.2	gi|227827981|ref|YP_002829761.1|	-	0.004	17.3	0.4	0.004	17.3	0.4	1.5	2	0	0	2	2	1	1	Type	VI	secretion	system,	TssO
Spc42p	PF11544.8	gi|227827981|ref|YP_002829761.1|	-	0.004	17.1	1.2	0.31	11.1	0.4	2.3	1	1	1	2	2	2	1	Spindle	pole	body	component	Spc42p
Spc24	PF08286.11	gi|227827981|ref|YP_002829761.1|	-	0.004	17.4	6.8	0.82	9.9	1.6	2.7	1	1	1	2	2	2	2	Spc24	subunit	of	Ndc80
DUF4407	PF14362.6	gi|227827981|ref|YP_002829761.1|	-	0.0041	16.5	3.6	0.023	14.1	1.7	2.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
PI3K_P85_iSH2	PF16454.5	gi|227827981|ref|YP_002829761.1|	-	0.0042	16.7	0.8	0.17	11.4	0.5	2.1	1	1	1	2	2	2	1	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
HlyD_2	PF12700.7	gi|227827981|ref|YP_002829761.1|	-	0.0045	15.8	1.2	0.0068	15.2	1.2	1.2	1	0	0	1	1	1	1	HlyD	family	secretion	protein
DUF16	PF01519.16	gi|227827981|ref|YP_002829761.1|	-	0.0046	17.4	0.9	0.087	13.3	0.4	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF16
HOOK	PF05622.12	gi|227827981|ref|YP_002829761.1|	-	0.0048	15.1	0.8	0.0066	14.7	0.8	1.1	1	0	0	1	1	1	1	HOOK	protein
CENP-Q	PF13094.6	gi|227827981|ref|YP_002829761.1|	-	0.0055	16.9	1.2	1.3	9.2	0.3	2.1	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Yuri_gagarin	PF15934.5	gi|227827981|ref|YP_002829761.1|	-	0.0055	16.6	0.3	0.011	15.6	0.3	1.3	1	1	0	1	1	1	1	Yuri	gagarin
CdvA	PF18822.1	gi|227827981|ref|YP_002829761.1|	-	0.0057	16.5	0.7	0.45	10.4	0.1	2.2	1	1	1	2	2	2	1	CdvA-like	coiled-coil	domain
Tropomyosin_1	PF12718.7	gi|227827981|ref|YP_002829761.1|	-	0.0057	16.8	0.3	0.018	15.2	0.3	1.7	1	1	0	1	1	1	1	Tropomyosin	like
MG2	PF01835.19	gi|227827981|ref|YP_002829761.1|	-	0.0062	17.0	0.3	0.37	11.3	0.1	2.5	2	0	0	2	2	2	1	MG2	domain
HMMR_N	PF15905.5	gi|227827981|ref|YP_002829761.1|	-	0.0063	16.0	0.6	0.0088	15.6	0.6	1.1	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
DUF4200	PF13863.6	gi|227827981|ref|YP_002829761.1|	-	0.0064	16.9	0.2	0.26	11.7	0.2	2.7	1	1	1	2	2	1	1	Domain	of	unknown	function	(DUF4200)
LXG	PF04740.12	gi|227827981|ref|YP_002829761.1|	-	0.0066	16.2	5.3	0.39	10.4	1.6	2.4	1	1	1	2	2	2	1	LXG	domain	of	WXG	superfamily
MAD	PF05557.13	gi|227827981|ref|YP_002829761.1|	-	0.007	14.8	0.1	0.01	14.2	0.1	1.2	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
DUF603	PF04645.12	gi|227827981|ref|YP_002829761.1|	-	0.0072	16.1	0.6	0.0072	16.1	0.6	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function,	DUF603
Jnk-SapK_ap_N	PF09744.9	gi|227827981|ref|YP_002829761.1|	-	0.0075	16.5	0.8	1.3	9.2	0.3	2.1	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
TSC22	PF01166.18	gi|227827981|ref|YP_002829761.1|	-	0.008	16.5	0.9	21	5.5	0.0	3.2	1	1	2	3	3	3	0	TSC-22/dip/bun	family
JIP_LZII	PF16471.5	gi|227827981|ref|YP_002829761.1|	-	0.0085	16.2	3.2	1.2	9.4	0.8	2.4	1	1	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
DUF3584	PF12128.8	gi|227827981|ref|YP_002829761.1|	-	0.0091	13.6	0.1	0.012	13.1	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
ZapB	PF06005.12	gi|227827981|ref|YP_002829761.1|	-	0.0092	16.4	3.4	0.99	9.9	1.4	2.6	1	1	2	3	3	3	0	Cell	division	protein	ZapB
IFT20	PF14931.6	gi|227827981|ref|YP_002829761.1|	-	0.0097	16.1	0.6	0.83	9.8	0.3	2.3	1	1	1	2	2	2	1	Intraflagellar	transport	complex	B,	subunit	20
YabA	PF06156.13	gi|227827981|ref|YP_002829761.1|	-	0.01	16.5	3.1	1.3	9.7	3.1	2.3	1	1	0	1	1	1	0	Initiation	control	protein	YabA
FapA	PF03961.13	gi|227827981|ref|YP_002829761.1|	-	0.011	14.4	6.1	0.024	13.3	6.1	1.9	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
CCDC158	PF15921.5	gi|227827981|ref|YP_002829761.1|	-	0.011	13.6	0.2	0.015	13.2	0.2	1.0	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	158
Prefoldin	PF02996.17	gi|227827981|ref|YP_002829761.1|	-	0.011	15.7	3.7	3.7	7.5	0.6	3.2	1	1	2	3	3	3	0	Prefoldin	subunit
APG17	PF04108.12	gi|227827981|ref|YP_002829761.1|	-	0.013	14.7	3.4	0.02	14.0	2.3	1.6	1	1	0	1	1	1	0	Autophagy	protein	Apg17
DUF4686	PF15742.5	gi|227827981|ref|YP_002829761.1|	-	0.013	14.6	0.4	0.018	14.2	0.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4686)
Exonuc_VII_L	PF02601.15	gi|227827981|ref|YP_002829761.1|	-	0.014	15.0	0.1	0.019	14.5	0.1	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
TMPIT	PF07851.13	gi|227827981|ref|YP_002829761.1|	-	0.014	14.7	0.3	0.029	13.6	0.3	1.5	1	0	0	1	1	1	0	TMPIT-like	protein
WEMBL	PF05701.11	gi|227827981|ref|YP_002829761.1|	-	0.015	14.0	0.7	0.023	13.4	0.7	1.2	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
DUF713	PF05218.14	gi|227827981|ref|YP_002829761.1|	-	0.015	15.0	0.1	0.03	14.1	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF713)
DUF489	PF04356.12	gi|227827981|ref|YP_002829761.1|	-	0.017	15.1	1.0	0.034	14.2	1.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF489)
Lectin_N	PF03954.14	gi|227827981|ref|YP_002829761.1|	-	0.017	14.8	6.8	0.48	10.2	2.2	2.6	1	1	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
Swi5	PF07061.11	gi|227827981|ref|YP_002829761.1|	-	0.018	15.1	3.7	0.85	9.7	1.1	2.8	1	1	1	2	2	2	0	Swi5
FliD_C	PF07195.12	gi|227827981|ref|YP_002829761.1|	-	0.018	14.4	7.5	0.36	10.2	1.8	2.3	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
UPF0242	PF06785.11	gi|227827981|ref|YP_002829761.1|	-	0.019	15.1	0.4	0.038	14.1	0.4	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
CC2-LZ	PF16516.5	gi|227827981|ref|YP_002829761.1|	-	0.02	15.3	0.3	0.2	12.1	0.1	2.0	1	1	1	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
DUF2968	PF11180.8	gi|227827981|ref|YP_002829761.1|	-	0.02	14.5	0.1	0.039	13.6	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
DHR10	PF18595.1	gi|227827981|ref|YP_002829761.1|	-	0.021	14.9	0.3	0.66	10.1	0.1	2.1	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
CALCOCO1	PF07888.11	gi|227827981|ref|YP_002829761.1|	-	0.022	13.7	1.7	0.036	12.9	1.7	1.3	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
HIP1_clath_bdg	PF16515.5	gi|227827981|ref|YP_002829761.1|	-	0.023	15.3	5.2	0.069	13.8	1.1	2.3	1	1	2	3	3	3	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
Uso1_p115_C	PF04871.13	gi|227827981|ref|YP_002829761.1|	-	0.023	15.0	4.1	0.28	11.6	1.2	2.1	1	1	1	2	2	2	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
COG6	PF06419.11	gi|227827981|ref|YP_002829761.1|	-	0.024	12.9	7.6	0.032	12.4	2.7	2.0	1	1	1	2	2	2	0	Conserved	oligomeric	complex	COG6
Golgin_A5	PF09787.9	gi|227827981|ref|YP_002829761.1|	-	0.024	14.1	0.1	0.033	13.6	0.1	1.1	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
HAUS-augmin3	PF14932.6	gi|227827981|ref|YP_002829761.1|	-	0.024	14.2	4.3	0.046	13.3	4.3	1.4	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
HALZ	PF02183.18	gi|227827981|ref|YP_002829761.1|	-	0.025	14.8	1.4	24	5.3	0.0	3.4	2	1	2	4	4	4	0	Homeobox	associated	leucine	zipper
Lzipper-MIP1	PF14389.6	gi|227827981|ref|YP_002829761.1|	-	0.026	14.8	0.2	2.1	8.7	0.0	2.4	1	1	1	2	2	2	0	Leucine-zipper	of	ternary	complex	factor	MIP1
Prominin	PF05478.11	gi|227827981|ref|YP_002829761.1|	-	0.026	12.5	5.0	0.039	11.9	5.0	1.2	1	0	0	1	1	1	0	Prominin
DUF4472	PF14739.6	gi|227827981|ref|YP_002829761.1|	-	0.027	15.2	0.3	0.042	14.6	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4472)
Fmp27_WPPW	PF10359.9	gi|227827981|ref|YP_002829761.1|	-	0.027	13.3	0.4	0.044	12.6	0.4	1.3	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Laminin_I	PF06008.14	gi|227827981|ref|YP_002829761.1|	-	0.028	14.1	6.4	0.044	13.5	6.4	1.2	1	0	0	1	1	1	0	Laminin	Domain	I
DUF641	PF04859.12	gi|227827981|ref|YP_002829761.1|	-	0.029	14.7	0.5	1.1	9.6	0.1	2.3	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
Leu_zip	PF15294.6	gi|227827981|ref|YP_002829761.1|	-	0.03	13.8	1.3	0.044	13.3	1.3	1.2	1	0	0	1	1	1	0	Leucine	zipper
Allexi_40kDa	PF05549.11	gi|227827981|ref|YP_002829761.1|	-	0.031	13.8	3.4	0.052	13.1	3.4	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
GrpE	PF01025.19	gi|227827981|ref|YP_002829761.1|	-	0.031	13.9	0.4	5.3	6.7	0.2	2.2	1	1	1	2	2	2	0	GrpE
Sec34	PF04136.15	gi|227827981|ref|YP_002829761.1|	-	0.036	14.0	7.6	0.22	11.4	3.1	2.3	1	1	1	2	2	2	0	Sec34-like	family
RasGAP_C	PF03836.15	gi|227827981|ref|YP_002829761.1|	-	0.036	14.2	2.8	1.6	8.9	0.5	2.2	1	1	1	2	2	2	0	RasGAP	C-terminus
DASH_Duo1	PF08651.10	gi|227827981|ref|YP_002829761.1|	-	0.043	13.6	9.5	0.38	10.6	2.7	3.1	1	1	2	3	3	3	0	DASH	complex	subunit	Duo1
DUF1192	PF06698.11	gi|227827981|ref|YP_002829761.1|	-	0.045	13.8	0.1	3.9	7.6	0.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1192)
Spc29	PF17082.5	gi|227827981|ref|YP_002829761.1|	-	0.046	13.6	1.0	0.092	12.6	0.9	1.4	1	1	0	1	1	1	0	Spindle	Pole	Component	29
FmiP_Thoc5	PF09766.9	gi|227827981|ref|YP_002829761.1|	-	0.046	13.0	5.3	0.27	10.5	2.1	2.0	1	1	1	2	2	2	0	Fms-interacting	protein/Thoc5
DASH_Spc34	PF08657.10	gi|227827981|ref|YP_002829761.1|	-	0.049	13.4	0.4	7.3	6.3	0.2	2.3	1	1	1	2	2	2	0	DASH	complex	subunit	Spc34
Nsp1_C	PF05064.13	gi|227827981|ref|YP_002829761.1|	-	0.049	13.4	1.5	0.13	12.1	1.5	1.6	1	1	0	1	1	1	0	Nsp1-like	C-terminal	region
Taxilin	PF09728.9	gi|227827981|ref|YP_002829761.1|	-	0.049	12.8	0.1	0.074	12.2	0.1	1.2	1	0	0	1	1	1	0	Myosin-like	coiled-coil	protein
SYCE1	PF15233.6	gi|227827981|ref|YP_002829761.1|	-	0.051	13.6	0.3	0.17	12.0	0.4	1.7	1	1	0	1	1	1	0	Synaptonemal	complex	central	element	protein	1
YlqD	PF11068.8	gi|227827981|ref|YP_002829761.1|	-	0.052	13.9	0.1	0.13	12.6	0.1	1.7	1	1	0	1	1	1	0	YlqD	protein
Helo_like_N	PF17111.5	gi|227827981|ref|YP_002829761.1|	-	0.053	12.9	2.6	0.83	9.0	0.5	2.5	1	1	1	2	2	2	0	Fungal	N-terminal	domain	of	STAND	proteins
Herpes_UL6	PF01763.16	gi|227827981|ref|YP_002829761.1|	-	0.062	11.8	3.2	0.092	11.2	3.2	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
AIP3	PF03915.13	gi|227827981|ref|YP_002829761.1|	-	0.07	12.2	0.3	0.093	11.8	0.3	1.1	1	0	0	1	1	1	0	Actin	interacting	protein	3
SseC	PF04888.12	gi|227827981|ref|YP_002829761.1|	-	0.074	12.6	0.2	0.074	12.6	0.2	2.6	3	0	0	3	3	2	0	Secretion	system	effector	C	(SseC)	like	family
EMP24_GP25L	PF01105.24	gi|227827981|ref|YP_002829761.1|	-	0.075	13.0	1.3	1.3	8.9	1.3	2.8	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
Uds1	PF15456.6	gi|227827981|ref|YP_002829761.1|	-	0.078	13.2	0.4	0.13	12.4	0.4	1.3	1	0	0	1	1	1	0	Up-regulated	During	Septation
THOC7	PF05615.13	gi|227827981|ref|YP_002829761.1|	-	0.083	13.2	0.5	0.13	12.5	0.5	1.2	1	0	0	1	1	1	0	Tho	complex	subunit	7
TBK1_CCD1	PF18394.1	gi|227827981|ref|YP_002829761.1|	-	0.084	12.4	3.8	3.2	7.3	1.3	2.7	1	1	1	2	2	2	0	TANK-binding	kinase	1	coiled-coil	domain	1
SKA1	PF07160.12	gi|227827981|ref|YP_002829761.1|	-	0.085	12.7	3.0	0.83	9.5	2.7	1.9	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
OmpH	PF03938.14	gi|227827981|ref|YP_002829761.1|	-	0.087	13.2	0.0	0.16	12.3	0.0	1.4	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Sec2p	PF06428.11	gi|227827981|ref|YP_002829761.1|	-	0.087	12.8	2.7	0.56	10.2	0.8	2.1	1	1	1	2	2	2	0	GDP/GTP	exchange	factor	Sec2p
Tropomyosin	PF00261.20	gi|227827981|ref|YP_002829761.1|	-	0.093	12.1	0.2	0.31	10.4	0.1	1.6	1	1	1	2	2	2	0	Tropomyosin
Bacillus_HBL	PF05791.11	gi|227827981|ref|YP_002829761.1|	-	0.097	12.5	11.8	0.15	11.8	2.9	2.8	2	1	1	3	3	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
YkyA	PF10368.9	gi|227827981|ref|YP_002829761.1|	-	0.1	12.2	0.1	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
Lipoprotein_7	PF01540.16	gi|227827981|ref|YP_002829761.1|	-	0.11	11.8	3.2	0.051	12.9	1.0	1.5	2	0	0	2	2	1	0	Adhesin	lipoprotein
Fzo_mitofusin	PF04799.13	gi|227827981|ref|YP_002829761.1|	-	0.11	12.1	2.3	1	8.9	2.3	2.4	1	1	0	1	1	1	0	fzo-like	conserved	region
Cluap1	PF10234.9	gi|227827981|ref|YP_002829761.1|	-	0.11	11.9	1.4	0.68	9.3	0.7	1.9	1	1	1	2	2	2	0	Clusterin-associated	protein-1
RIFIN	PF02009.16	gi|227827981|ref|YP_002829761.1|	-	0.12	12.2	4.6	0.26	11.2	4.6	1.5	1	0	0	1	1	1	0	Rifin
CENP-H	PF05837.12	gi|227827981|ref|YP_002829761.1|	-	0.14	12.6	6.3	1.2	9.6	6.3	2.1	1	1	0	1	1	1	0	Centromere	protein	H	(CENP-H)
CK2S	PF15011.6	gi|227827981|ref|YP_002829761.1|	-	0.14	12.0	0.4	1.2	9.0	0.2	2.4	2	1	0	2	2	1	0	Casein	Kinase	2	substrate
HAUS5	PF14817.6	gi|227827981|ref|YP_002829761.1|	-	0.15	10.8	0.0	0.22	10.2	0.0	1.2	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	5
Cnn_1N	PF07989.11	gi|227827981|ref|YP_002829761.1|	-	0.16	12.2	0.8	1.3	9.2	0.8	2.1	1	1	0	1	1	1	0	Centrosomin	N-terminal	motif	1
Snf7	PF03357.21	gi|227827981|ref|YP_002829761.1|	-	0.17	11.5	1.2	0.35	10.5	1.2	1.5	1	1	0	1	1	1	0	Snf7
CEP63	PF17045.5	gi|227827981|ref|YP_002829761.1|	-	0.18	11.7	0.0	0.25	11.2	0.0	1.1	1	0	0	1	1	1	0	Centrosomal	protein	of	63	kDa
DLP_helical	PF18709.1	gi|227827981|ref|YP_002829761.1|	-	0.19	10.9	1.4	1.2	8.3	1.4	1.9	1	1	1	2	2	2	0	Dynamin-like	helical	domain
Rootletin	PF15035.6	gi|227827981|ref|YP_002829761.1|	-	0.19	11.7	0.3	0.29	11.1	0.3	1.1	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Occludin_ELL	PF07303.13	gi|227827981|ref|YP_002829761.1|	-	0.2	12.4	0.0	1.3	9.8	0.0	2.3	2	1	1	3	3	2	0	Occludin	homology	domain
LidA_Long_CC	PF18641.1	gi|227827981|ref|YP_002829761.1|	-	0.2	11.7	0.3	1.1	9.4	0.3	1.9	1	1	1	2	2	2	0	LidA	long	coiled-coil	domain
HCMV_UL139	PF12507.8	gi|227827981|ref|YP_002829761.1|	-	0.2	12.1	0.1	12	6.3	0.1	2.5	1	1	0	1	1	1	0	Human	Cytomegalovirus	UL139	protein
Syntaxin-6_N	PF09177.11	gi|227827981|ref|YP_002829761.1|	-	0.2	12.2	3.4	5	7.7	0.7	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
HrpB7	PF09486.10	gi|227827981|ref|YP_002829761.1|	-	0.21	12.0	0.0	0.41	11.0	0.0	1.4	1	1	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
Fungal_TACC	PF12709.7	gi|227827981|ref|YP_002829761.1|	-	0.21	12.0	1.1	38	4.8	0.1	3.1	1	1	2	3	3	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF4094	PF13334.6	gi|227827981|ref|YP_002829761.1|	-	0.22	12.0	5.6	5.1	7.6	0.4	3.1	1	1	2	3	3	2	0	Domain	of	unknown	function	(DUF4094)
HsbA	PF12296.8	gi|227827981|ref|YP_002829761.1|	-	0.23	11.9	16.4	5.3	7.5	6.8	3.4	1	1	1	2	2	2	0	Hydrophobic	surface	binding	protein	A
CCDC144C	PF14915.6	gi|227827981|ref|YP_002829761.1|	-	0.24	10.5	6.0	2.6	7.1	1.3	1.9	1	1	0	1	1	1	0	CCDC144C	protein	coiled-coil	region
HAUS6_N	PF14661.6	gi|227827981|ref|YP_002829761.1|	-	0.24	10.9	0.1	1.5	8.4	0.0	1.6	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Med9	PF07544.13	gi|227827981|ref|YP_002829761.1|	-	0.25	11.5	0.4	2.5	8.3	0.2	2.2	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
COG2	PF06148.11	gi|227827981|ref|YP_002829761.1|	-	0.28	11.3	2.3	8	6.6	0.1	2.2	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Sec3_C	PF09763.9	gi|227827981|ref|YP_002829761.1|	-	0.28	9.5	4.0	0.4	9.0	4.0	1.2	1	0	0	1	1	1	0	Exocyst	complex	component	Sec3
Med4	PF10018.9	gi|227827981|ref|YP_002829761.1|	-	0.28	10.8	1.1	1.8	8.2	1.1	2.0	1	1	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Vps51	PF08700.11	gi|227827981|ref|YP_002829761.1|	-	0.32	11.1	7.2	3.3	7.8	0.3	3.5	2	1	1	4	4	3	0	Vps51/Vps67
DivIVA	PF05103.13	gi|227827981|ref|YP_002829761.1|	-	0.32	11.1	2.1	21	5.2	0.6	2.5	1	1	0	2	2	2	0	DivIVA	protein
V-SNARE	PF05008.15	gi|227827981|ref|YP_002829761.1|	-	0.32	11.4	1.2	0.78	10.2	1.2	1.7	1	1	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
CHDCT2	PF08074.11	gi|227827981|ref|YP_002829761.1|	-	0.33	11.1	1.8	5.6	7.1	0.6	2.2	1	1	1	2	2	2	0	CHDCT2	(NUC038)	domain
SF-assemblin	PF06705.11	gi|227827981|ref|YP_002829761.1|	-	0.34	10.2	6.0	1	8.7	6.0	1.6	1	1	0	1	1	1	0	SF-assemblin/beta	giardin
MPS2	PF17060.5	gi|227827981|ref|YP_002829761.1|	-	0.36	10.0	2.3	1.9	7.7	2.3	2.0	1	1	0	1	1	1	0	Monopolar	spindle	protein	2
DASH_Dam1	PF08653.10	gi|227827981|ref|YP_002829761.1|	-	0.37	10.6	5.7	28	4.6	0.3	3.5	1	1	3	4	4	4	0	DASH	complex	subunit	Dam1
GCN5L1	PF06320.13	gi|227827981|ref|YP_002829761.1|	-	0.39	10.9	1.8	8.9	6.5	0.4	2.1	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
Rho_Binding	PF08912.11	gi|227827981|ref|YP_002829761.1|	-	0.47	11.3	2.2	16	6.4	0.6	2.3	1	1	1	2	2	2	0	Rho	Binding
LURAP	PF14854.6	gi|227827981|ref|YP_002829761.1|	-	0.57	10.2	5.1	1.2	9.1	1.4	2.1	1	1	1	2	2	2	0	Leucine	rich	adaptor	protein
Flagellin_C	PF00700.21	gi|227827981|ref|YP_002829761.1|	-	0.57	10.6	10.3	0.27	11.6	1.4	2.6	1	1	1	2	2	2	0	Bacterial	flagellin	C-terminal	helical	region
Sec8_exocyst	PF04048.14	gi|227827981|ref|YP_002829761.1|	-	0.57	10.1	8.7	0.48	10.3	2.9	2.2	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
RmuC	PF02646.16	gi|227827981|ref|YP_002829761.1|	-	0.61	9.2	3.7	6.1	5.9	0.5	2.0	1	1	1	2	2	2	0	RmuC	family
Dynactin_p22	PF07426.11	gi|227827981|ref|YP_002829761.1|	-	0.66	9.8	5.4	1.3	8.9	2.2	2.0	1	1	1	2	2	2	0	Dynactin	subunit	p22
DASH_Hsk3	PF08227.11	gi|227827981|ref|YP_002829761.1|	-	0.7	10.3	13.1	2.1	8.8	0.5	3.9	1	1	3	4	4	4	0	DASH	complex	subunit	Hsk3	like
DASH_Dad2	PF08654.10	gi|227827981|ref|YP_002829761.1|	-	0.72	10.3	6.5	1.8	9.0	1.7	3.0	1	1	2	3	3	3	0	DASH	complex	subunit	Dad2
Paramyx_P_V_C	PF03210.13	gi|227827981|ref|YP_002829761.1|	-	1.4	8.6	7.0	1.1	9.0	1.3	2.9	2	1	0	3	3	3	0	Paramyxovirus	P/V	phosphoprotein	C-terminal
Cep57_CLD_2	PF14197.6	gi|227827981|ref|YP_002829761.1|	-	1.5	8.9	5.6	21	5.3	0.2	2.5	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
Syntaxin_2	PF14523.6	gi|227827981|ref|YP_002829761.1|	-	1.7	9.1	13.2	5.8	7.3	6.6	2.3	1	1	1	2	2	2	0	Syntaxin-like	protein
DASH_Dad3	PF08656.10	gi|227827981|ref|YP_002829761.1|	-	1.7	8.8	10.0	2.6e+03	-1.4	10.0	3.5	1	1	0	1	1	0	0	DASH	complex	subunit	Dad3
Vps5	PF09325.10	gi|227827981|ref|YP_002829761.1|	-	1.8	8.1	7.8	1.6	8.2	0.7	2.1	1	1	1	2	2	2	0	Vps5	C	terminal	like
Muted	PF14942.6	gi|227827981|ref|YP_002829761.1|	-	2.3	8.6	3.9	7.1	7.0	3.9	1.7	1	1	0	1	1	1	0	Organelle	biogenesis,	Muted-like	protein
Phage_holin_2_4	PF16082.5	gi|227827981|ref|YP_002829761.1|	-	4	7.2	6.1	4.4	7.1	3.0	2.7	2	0	0	2	2	1	0	Bacteriophage	holin	family,	superfamily	II-like
APC_N_CC	PF16689.5	gi|227827981|ref|YP_002829761.1|	-	4.2	7.5	7.1	9.6	6.4	2.8	2.7	2	1	0	2	2	2	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DUF948	PF06103.11	gi|227827981|ref|YP_002829761.1|	-	7.2	6.9	20.2	0.31	11.3	4.7	3.6	2	1	1	3	3	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Arylesterase	PF01731.20	gi|227827982|ref|YP_002829762.1|	-	1.1	9.6	6.1	1.6	8.9	0.5	3.5	2	0	0	2	2	2	0	Arylesterase
HTH_3	PF01381.22	gi|227827983|ref|YP_002829763.1|	-	5.1e-10	39.3	0.1	1e-08	35.1	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.7	gi|227827983|ref|YP_002829763.1|	-	6.9e-07	29.2	0.1	2e-06	27.7	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|227827983|ref|YP_002829763.1|	-	9.6e-05	22.7	0.2	0.00017	21.8	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|227827983|ref|YP_002829763.1|	-	0.017	15.1	0.0	1.4	8.9	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|227827983|ref|YP_002829763.1|	-	0.14	12.0	0.0	0.49	10.3	0.0	1.8	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
Beta-Casp	PF10996.8	gi|227827984|ref|YP_002829764.1|	-	5.7e-15	55.6	0.0	1.4e-14	54.3	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|227827984|ref|YP_002829764.1|	-	2.5e-14	52.9	0.0	4.6e-14	52.1	0.0	1.4	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_6	PF16661.5	gi|227827984|ref|YP_002829764.1|	-	6.4e-11	42.1	0.0	1.1e-10	41.3	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|227827984|ref|YP_002829764.1|	-	3.4e-05	23.4	0.0	0.0003	20.4	0.0	2.2	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|227827984|ref|YP_002829764.1|	-	3.7e-05	23.8	0.0	0.00013	22.1	0.0	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
PDEase_II	PF02112.15	gi|227827984|ref|YP_002829764.1|	-	0.0011	18.1	0.0	0.0018	17.5	0.0	1.3	1	0	0	1	1	1	1	cAMP	phosphodiesterases	class-II
CheB_methylest	PF01339.17	gi|227827984|ref|YP_002829764.1|	-	0.093	12.5	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	CheB	methylesterase
tRNA-Thr_ED	PF08915.11	gi|227827985|ref|YP_002829765.1|	-	1.9e-50	170.5	2.1	2.7e-50	170.0	0.2	2.0	2	0	0	2	2	2	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|227827985|ref|YP_002829765.1|	-	2.6e-24	85.2	0.9	5e-24	84.3	0.9	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
HGTP_anticodon2	PF12745.7	gi|227827985|ref|YP_002829765.1|	-	0.00084	18.9	0.4	0.0014	18.2	0.4	1.3	1	0	0	1	1	1	1	Anticodon	binding	domain	of	tRNAs
RapH_N	PF18801.1	gi|227827985|ref|YP_002829765.1|	-	0.0098	16.0	0.9	0.057	13.5	0.7	2.4	2	0	0	2	2	2	1	response	regulator	aspartate	phosphatase	H,	N	terminal
DUF2853	PF11015.8	gi|227827985|ref|YP_002829765.1|	-	2	9.1	4.7	5.1	7.8	0.6	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2853)
GHMP_kinases_N	PF00288.26	gi|227827986|ref|YP_002829766.1|	-	2.8e-13	49.9	0.0	5.2e-13	49.0	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|227827986|ref|YP_002829766.1|	-	1.5e-08	34.8	0.1	3.6e-08	33.7	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
SIS	PF01380.22	gi|227827987|ref|YP_002829767.1|	-	6.5e-45	152.2	1.0	1.3e-25	89.7	0.2	2.5	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|227827987|ref|YP_002829767.1|	-	1.8e-20	73.5	0.0	4.2e-20	72.3	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|227827987|ref|YP_002829767.1|	-	5e-19	68.4	0.0	1.8e-18	66.6	0.0	1.9	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|227827987|ref|YP_002829767.1|	-	0.00024	21.1	0.3	0.0011	19.0	0.0	2.2	3	0	0	3	3	3	1	SIS	domain
GATase_4	PF13230.6	gi|227827987|ref|YP_002829767.1|	-	0.00044	19.2	0.1	0.00079	18.4	0.1	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
NTP_transferase	PF00483.23	gi|227827988|ref|YP_002829768.1|	-	2.7e-15	56.6	0.5	2.4e-13	50.3	0.1	2.1	1	1	1	2	2	2	2	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|227827988|ref|YP_002829768.1|	-	1.2e-13	50.2	7.9	0.00011	21.8	1.0	5.1	2	1	1	4	4	4	3	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|227827988|ref|YP_002829768.1|	-	4.7e-09	36.8	0.0	5.9e-09	36.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|227827988|ref|YP_002829768.1|	-	0.0068	16.1	5.5	3.3	7.5	0.6	4.1	4	1	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Glycos_transf_2	PF00535.26	gi|227827988|ref|YP_002829768.1|	-	0.013	15.4	0.1	0.02	14.7	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
IspD	PF01128.19	gi|227827988|ref|YP_002829768.1|	-	0.018	14.8	0.3	0.028	14.2	0.3	1.3	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Fucokinase	PF07959.12	gi|227827988|ref|YP_002829768.1|	-	0.11	11.4	0.1	1.5	7.7	0.0	2.0	1	1	1	2	2	2	0	L-fucokinase
RIFIN	PF02009.16	gi|227827989|ref|YP_002829769.1|	-	0.0027	17.6	11.7	0.0043	17.0	11.7	1.3	1	0	0	1	1	1	1	Rifin
Stevor	PF17410.2	gi|227827989|ref|YP_002829769.1|	-	0.012	15.2	12.0	0.025	14.2	12.0	1.5	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
SOG2	PF10428.9	gi|227827989|ref|YP_002829769.1|	-	0.025	13.8	21.0	0.04	13.1	21.0	1.3	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
Amnionless	PF14828.6	gi|227827989|ref|YP_002829769.1|	-	0.67	8.7	4.0	1.4	7.7	4.0	1.5	1	0	0	1	1	1	0	Amnionless
RAP1	PF07218.11	gi|227827989|ref|YP_002829769.1|	-	3.3	5.9	12.2	5.6	5.1	12.2	1.3	1	0	0	1	1	1	0	Rhoptry-associated	protein	1	(RAP-1)
OCD_Mu_crystall	PF02423.15	gi|227827990|ref|YP_002829770.1|	-	1.7e-43	148.7	0.2	2.3e-43	148.4	0.2	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|227827990|ref|YP_002829770.1|	-	6.1e-05	23.1	0.0	0.0001	22.4	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|227827990|ref|YP_002829770.1|	-	0.00037	19.9	0.1	0.00064	19.1	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Cob_adeno_trans	PF01923.18	gi|227827991|ref|YP_002829771.1|	-	9.4e-48	162.4	0.0	1.1e-47	162.3	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
Na_H_Exchanger	PF00999.21	gi|227827992|ref|YP_002829772.1|	-	6.6e-31	107.4	47.3	9.6e-31	106.9	47.3	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
CBS	PF00571.28	gi|227827992|ref|YP_002829772.1|	-	2.6e-06	27.8	1.7	5.1e-05	23.6	0.1	3.0	2	0	0	2	2	2	1	CBS	domain
DUF2614	PF11023.8	gi|227827992|ref|YP_002829772.1|	-	0.027	14.5	0.3	0.027	14.5	0.3	4.4	3	1	1	4	4	4	0	Zinc-ribbon	containing	domain
Phage_integrase	PF00589.22	gi|227827993|ref|YP_002829773.1|	-	1.6e-34	119.1	3.7	8.4e-34	116.8	2.7	2.2	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|227827993|ref|YP_002829773.1|	-	7.4e-13	48.8	0.0	2.5e-07	31.0	0.0	2.7	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|227827993|ref|YP_002829773.1|	-	9.1e-06	25.9	0.3	0.00066	19.9	0.0	2.9	2	1	1	3	3	3	2	Phage	integrase,	N-terminal	SAM-like	domain
Integrase_1	PF12835.7	gi|227827993|ref|YP_002829773.1|	-	0.00054	20.1	0.4	0.00054	20.1	0.4	1.6	2	0	0	2	2	2	1	Integrase
Phage_integr_3	PF16795.5	gi|227827993|ref|YP_002829773.1|	-	0.013	15.4	5.1	0.15	11.9	1.7	2.3	2	1	0	2	2	2	0	Archaeal	phage	integrase
HTH_37	PF13744.6	gi|227827993|ref|YP_002829773.1|	-	0.051	13.5	0.4	0.49	10.4	0.0	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
IZUMO	PF15005.6	gi|227827993|ref|YP_002829773.1|	-	1.7	9.2	4.7	2	9.0	1.9	2.4	2	1	1	3	3	3	0	Izumo	sperm-egg	fusion,	Ig	domain-associated
Radical_SAM	PF04055.21	gi|227827994|ref|YP_002829774.1|	-	2.4e-15	57.3	0.0	7.1e-14	52.5	0.0	2.1	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|227827994|ref|YP_002829774.1|	-	5.6e-09	36.4	0.0	1.1e-08	35.5	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|227827994|ref|YP_002829774.1|	-	3.3e-08	33.7	0.0	1.4e-07	31.7	0.0	2.1	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|227827994|ref|YP_002829774.1|	-	0.02	15.4	0.0	0.09	13.3	0.0	2.1	2	0	0	2	2	2	0	Iron-sulfur	cluster-binding	domain
DUF5452	PF17533.2	gi|227827994|ref|YP_002829774.1|	-	0.048	13.7	0.7	0.048	13.7	0.7	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5452)
Hexapep	PF00132.24	gi|227827995|ref|YP_002829775.1|	-	1.3e-19	69.1	13.6	2.9e-07	29.9	1.5	4.4	4	1	1	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|227827995|ref|YP_002829775.1|	-	8.6e-08	31.8	9.8	0.00068	19.3	1.4	4.1	3	1	1	4	4	4	3	Hexapeptide	repeat	of	succinyl-transferase
DUF4954	PF16314.5	gi|227827995|ref|YP_002829775.1|	-	0.18	9.9	2.2	0.29	9.2	1.8	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
Methyltr_RsmB-F	PF01189.17	gi|227827996|ref|YP_002829776.1|	-	1.6e-36	125.9	0.1	7.7e-34	117.1	0.0	2.2	1	1	1	2	2	2	2	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_31	PF13847.6	gi|227827996|ref|YP_002829776.1|	-	4.8e-05	23.2	0.0	7.4e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltr_RsmF_N	PF17125.5	gi|227827996|ref|YP_002829776.1|	-	0.00035	21.0	0.0	0.047	14.2	0.0	2.8	2	1	0	2	2	2	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
Methyltransf_5	PF01795.19	gi|227827996|ref|YP_002829776.1|	-	0.001	18.7	0.0	0.0018	17.9	0.0	1.3	1	0	0	1	1	1	1	MraW	methylase	family
MTS	PF05175.14	gi|227827996|ref|YP_002829776.1|	-	0.0049	16.4	0.0	0.022	14.3	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	small	domain
DUF2431	PF10354.9	gi|227827996|ref|YP_002829776.1|	-	0.007	16.6	0.0	0.016	15.5	0.0	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2431)
PUA	PF01472.20	gi|227827996|ref|YP_002829776.1|	-	0.012	15.5	0.1	0.025	14.5	0.1	1.5	1	0	0	1	1	1	0	PUA	domain
Methyltransf_25	PF13649.6	gi|227827996|ref|YP_002829776.1|	-	0.067	13.9	0.0	0.53	11.0	0.0	2.4	2	1	0	2	2	2	0	Methyltransferase	domain
UPF0113	PF03657.13	gi|227827996|ref|YP_002829776.1|	-	0.07	13.4	0.2	0.19	12.0	0.2	1.7	1	0	0	1	1	1	0	UPF0113	PUA	domain
GHMP_kinases_N	PF00288.26	gi|227827997|ref|YP_002829777.1|	-	0.03	14.5	0.0	0.05	13.8	0.0	1.4	1	0	0	1	1	1	0	GHMP	kinases	N	terminal	domain
AMP-binding	PF00501.28	gi|227827998|ref|YP_002829778.1|	-	3.9e-62	210.2	0.0	5e-62	209.9	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227827998|ref|YP_002829778.1|	-	1.5e-09	38.7	0.2	2.8e-09	37.8	0.2	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Thioredoxin	PF00085.20	gi|227827999|ref|YP_002829779.1|	-	5.8e-28	96.9	0.1	7.9e-28	96.5	0.1	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|227827999|ref|YP_002829779.1|	-	1.1e-06	29.1	0.4	2.9e-05	24.5	0.4	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|227827999|ref|YP_002829779.1|	-	2.6e-06	27.7	0.4	0.001	19.4	0.1	2.4	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_3	PF13192.6	gi|227827999|ref|YP_002829779.1|	-	3.2e-05	23.9	0.3	0.00012	22.1	0.1	1.9	1	1	1	2	2	2	1	Thioredoxin	domain
OST3_OST6	PF04756.13	gi|227827999|ref|YP_002829779.1|	-	0.00015	21.2	0.0	0.00017	21.0	0.0	1.2	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|227827999|ref|YP_002829779.1|	-	0.00042	20.2	0.9	0.12	12.3	0.2	2.4	1	1	1	2	2	2	2	AhpC/TSA	family
HyaE	PF07449.11	gi|227827999|ref|YP_002829779.1|	-	0.00072	19.5	0.0	0.025	14.5	0.0	2.2	2	0	0	2	2	2	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_7	PF13899.6	gi|227827999|ref|YP_002829779.1|	-	0.0082	16.3	0.2	0.018	15.2	0.2	1.6	1	1	0	1	1	1	1	Thioredoxin-like
Nucleolin_bd	PF16725.5	gi|227827999|ref|YP_002829779.1|	-	0.0087	15.7	0.2	0.016	14.8	0.2	1.4	1	0	0	1	1	1	1	Nucleolin	binding	domain
Thioredoxin_6	PF13848.6	gi|227827999|ref|YP_002829779.1|	-	0.02	14.8	0.1	0.057	13.3	0.1	1.8	1	1	1	2	2	2	0	Thioredoxin-like	domain
Redoxin	PF08534.10	gi|227827999|ref|YP_002829779.1|	-	0.029	14.1	0.7	0.1	12.3	0.2	1.8	1	1	0	2	2	2	0	Redoxin
DIM1	PF02966.16	gi|227827999|ref|YP_002829779.1|	-	0.07	12.9	0.1	0.14	12.0	0.0	1.4	2	0	0	2	2	2	0	Mitosis	protein	DIM1
ABC_tran	PF00005.27	gi|227828000|ref|YP_002829780.1|	-	1.4e-23	83.9	0.1	2.1e-23	83.3	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_29	PF13555.6	gi|227828000|ref|YP_002829780.1|	-	2e-07	30.7	0.2	4e-07	29.7	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|227828000|ref|YP_002829780.1|	-	1.4e-06	28.9	3.7	2.5e-06	28.1	3.7	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|227828000|ref|YP_002829780.1|	-	2.5e-05	24.2	1.7	0.00028	20.8	1.2	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|227828000|ref|YP_002829780.1|	-	7.1e-05	22.7	0.9	9.3e-05	22.3	0.8	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|227828000|ref|YP_002829780.1|	-	0.00016	22.1	0.0	0.0002	21.8	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
T2SSE	PF00437.20	gi|227828000|ref|YP_002829780.1|	-	0.00017	20.8	0.0	0.0003	19.9	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
NB-ARC	PF00931.22	gi|227828000|ref|YP_002829780.1|	-	0.0013	17.9	0.8	0.0076	15.5	0.8	1.9	1	1	0	1	1	1	1	NB-ARC	domain
SMC_N	PF02463.19	gi|227828000|ref|YP_002829780.1|	-	0.0033	16.9	2.0	0.0055	16.2	0.9	1.8	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|227828000|ref|YP_002829780.1|	-	0.0037	17.5	0.3	0.0074	16.6	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
KAP_NTPase	PF07693.14	gi|227828000|ref|YP_002829780.1|	-	0.0066	15.7	0.0	0.0071	15.6	0.0	1.1	1	0	0	1	1	1	1	KAP	family	P-loop	domain
NTPase_1	PF03266.15	gi|227828000|ref|YP_002829780.1|	-	0.0068	16.3	0.9	0.026	14.4	0.1	2.0	2	0	0	2	2	2	1	NTPase
Zeta_toxin	PF06414.12	gi|227828000|ref|YP_002829780.1|	-	0.0071	15.7	0.0	0.014	14.7	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
RsgA_GTPase	PF03193.16	gi|227828000|ref|YP_002829780.1|	-	0.0077	16.1	0.3	0.015	15.2	0.1	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_30	PF13604.6	gi|227828000|ref|YP_002829780.1|	-	0.0079	15.9	0.0	0.012	15.4	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|227828000|ref|YP_002829780.1|	-	0.016	15.2	0.1	0.023	14.6	0.1	1.2	1	0	0	1	1	1	0	NACHT	domain
MMR_HSR1	PF01926.23	gi|227828000|ref|YP_002829780.1|	-	0.016	15.3	1.5	0.022	14.8	1.4	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ATPase_2	PF01637.18	gi|227828000|ref|YP_002829780.1|	-	0.018	14.9	0.5	0.047	13.6	0.1	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|227828000|ref|YP_002829780.1|	-	0.028	14.9	0.8	0.052	14.1	0.8	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|227828000|ref|YP_002829780.1|	-	0.029	14.4	0.4	0.12	12.5	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.23	gi|227828000|ref|YP_002829780.1|	-	0.031	14.4	0.7	0.18	11.8	0.1	2.0	2	0	0	2	2	2	0	Dynamin	family
ABC_ATPase	PF09818.9	gi|227828000|ref|YP_002829780.1|	-	0.05	12.4	0.7	0.084	11.7	0.7	1.2	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
Thioredoxin_8	PF13905.6	gi|227828000|ref|YP_002829780.1|	-	0.083	13.2	0.4	0.33	11.3	0.3	2.0	1	1	1	2	2	2	0	Thioredoxin-like
PRK	PF00485.18	gi|227828000|ref|YP_002829780.1|	-	0.087	12.6	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
MukB	PF04310.12	gi|227828000|ref|YP_002829780.1|	-	0.093	12.5	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	MukB	N-terminal
Gln-synt_C	PF00120.24	gi|227828001|ref|YP_002829781.1|	-	7.7e-132	439.5	0.0	8.9e-132	439.3	0.0	1.0	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|227828001|ref|YP_002829781.1|	-	1.2e-26	92.3	0.0	2.8e-26	91.1	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
HTH_24	PF13412.6	gi|227828002|ref|YP_002829782.1|	-	1e-07	31.4	2.7	3.2e-07	29.8	0.2	2.9	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|227828002|ref|YP_002829782.1|	-	1.8e-07	31.0	0.1	4.6e-07	29.7	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|227828002|ref|YP_002829782.1|	-	7.8e-05	22.6	0.0	0.00018	21.4	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|227828002|ref|YP_002829782.1|	-	0.00079	19.3	0.1	0.0016	18.3	0.1	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|227828002|ref|YP_002829782.1|	-	0.002	18.0	0.7	0.002	18.0	0.7	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.6	gi|227828002|ref|YP_002829782.1|	-	0.015	15.5	0.3	0.049	13.8	0.1	1.9	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|227828002|ref|YP_002829782.1|	-	0.017	14.9	0.0	0.03	14.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|227828002|ref|YP_002829782.1|	-	0.022	14.7	0.2	0.05	13.6	0.2	1.6	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
DprA_WH	PF17782.1	gi|227828002|ref|YP_002829782.1|	-	0.036	14.2	0.0	0.052	13.7	0.0	1.2	1	0	0	1	1	1	0	DprA	winged	helix	domain
Rio2_N	PF09202.11	gi|227828002|ref|YP_002829782.1|	-	0.063	13.5	0.1	0.19	11.9	0.1	1.8	1	0	0	1	1	1	0	Rio2,	N-terminal
GntR	PF00392.21	gi|227828002|ref|YP_002829782.1|	-	0.064	12.9	0.2	0.15	11.7	0.2	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
LysR_substrate	PF03466.20	gi|227828002|ref|YP_002829782.1|	-	0.065	12.6	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	LysR	substrate	binding	domain
TFIIE_alpha	PF02002.17	gi|227828002|ref|YP_002829782.1|	-	0.067	13.1	1.6	0.071	13.0	0.2	1.7	2	0	0	2	2	2	0	TFIIE	alpha	subunit
Rrf2	PF02082.20	gi|227828002|ref|YP_002829782.1|	-	0.12	12.7	0.2	0.24	11.8	0.2	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
GTP_cyclohydroI	PF01227.22	gi|227828003|ref|YP_002829783.1|	-	1e-66	223.8	0.0	1.2e-66	223.6	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
FlpD	PF02662.16	gi|227828003|ref|YP_002829783.1|	-	0.11	12.5	0.1	7.1	6.6	0.0	2.4	2	0	0	2	2	2	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Peptidase_M24	PF00557.24	gi|227828004|ref|YP_002829784.1|	-	1.8e-68	230.3	0.9	2.5e-68	229.9	0.9	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|227828004|ref|YP_002829784.1|	-	1.7e-12	48.1	0.0	2.8e-12	47.4	0.0	1.3	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Radical_SAM	PF04055.21	gi|227828005|ref|YP_002829785.1|	-	3.6e-27	95.8	0.2	5.5e-26	91.9	0.1	2.2	1	1	1	2	2	2	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|227828005|ref|YP_002829785.1|	-	2.4e-25	88.9	0.0	3.8e-25	88.3	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_12	PF13353.6	gi|227828005|ref|YP_002829785.1|	-	1.4e-07	31.8	0.1	6.5e-07	29.7	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|227828005|ref|YP_002829785.1|	-	6.2e-06	26.3	0.1	2.3e-05	24.5	0.0	1.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
zf-ribbon_3	PF13248.6	gi|227828006|ref|YP_002829786.1|	-	0.0091	15.4	0.1	0.014	14.8	0.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|227828006|ref|YP_002829786.1|	-	0.1	12.1	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|227828006|ref|YP_002829786.1|	-	0.16	11.6	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
RIO1	PF01163.22	gi|227828007|ref|YP_002829787.1|	-	0.024	14.2	0.2	0.062	12.9	0.1	1.6	1	1	1	2	2	2	0	RIO1	family
PALP	PF00291.25	gi|227828009|ref|YP_002829789.1|	-	2.5e-52	178.1	0.0	5.3e-52	177.0	0.0	1.5	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
TusA	PF01206.17	gi|227828010|ref|YP_002829790.1|	-	4.4e-07	29.6	0.0	5.4e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE_2	PF13686.6	gi|227828011|ref|YP_002829791.1|	-	2.1e-11	43.9	0.0	4.8e-05	23.3	0.0	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|227828011|ref|YP_002829791.1|	-	3.2e-05	24.3	0.0	4.3e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Cpn10	PF00166.21	gi|227828011|ref|YP_002829791.1|	-	0.1	12.6	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Chaperonin	10	Kd	subunit
DUF711	PF05167.12	gi|227828012|ref|YP_002829792.1|	-	1.1e-29	103.6	0.0	1.3e-27	96.7	0.0	2.8	2	1	0	2	2	2	2	Uncharacterised	ACR	(DUF711)
MazE_antitoxin	PF04014.18	gi|227828013|ref|YP_002829793.1|	-	3.3e-08	33.3	0.0	1.3e-07	31.3	0.0	2.1	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PhoU	PF01895.19	gi|227828013|ref|YP_002829793.1|	-	4.9e-07	30.1	15.4	7.2e-07	29.6	4.9	2.5	2	0	0	2	2	2	2	PhoU	domain
DUF4455	PF14643.6	gi|227828013|ref|YP_002829793.1|	-	0.0037	16.0	0.8	0.0037	16.0	0.8	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4455)
CENP-R	PF06729.12	gi|227828013|ref|YP_002829793.1|	-	0.03	14.3	0.2	0.098	12.6	0.0	1.9	1	1	0	2	2	2	0	Kinetochore	component,	CENP-R
RICTOR_M	PF14666.6	gi|227828013|ref|YP_002829793.1|	-	0.032	14.0	0.3	0.1	12.4	0.3	1.9	1	0	0	1	1	1	0	Rapamycin-insensitive	companion	of	mTOR,	middle	domain
QRPTase_C	PF01729.19	gi|227828014|ref|YP_002829794.1|	-	1.2e-21	77.2	0.0	1.7e-21	76.8	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NAPRTase_C	PF17956.1	gi|227828014|ref|YP_002829794.1|	-	1.4e-06	28.7	0.1	5.5e-06	26.8	0.0	1.8	1	1	1	2	2	2	1	Nicotinate	phosphoribosyltransferase	C-terminal	domain
QRPTase_N	PF02749.16	gi|227828014|ref|YP_002829794.1|	-	0.0015	18.5	0.0	0.0027	17.7	0.0	1.4	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribosomal_S19e	PF01090.19	gi|227828015|ref|YP_002829795.1|	-	3.3e-48	162.9	0.0	3.7e-48	162.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
Herpes_UL92	PF03048.14	gi|227828015|ref|YP_002829795.1|	-	0.15	11.8	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	UL92	family
dsDNA_bind	PF01984.20	gi|227828016|ref|YP_002829796.1|	-	1.9e-26	92.5	14.6	2.4e-26	92.2	14.6	1.1	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
4HB_MCP_1	PF12729.7	gi|227828016|ref|YP_002829796.1|	-	0.037	13.6	6.0	0.049	13.2	6.0	1.1	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
ANAPC2	PF08672.11	gi|227828016|ref|YP_002829796.1|	-	0.051	14.1	0.7	9.8	6.8	0.0	2.4	2	0	0	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
Acetyltransf_6	PF13480.7	gi|227828016|ref|YP_002829796.1|	-	0.13	12.4	0.7	8.5	6.5	0.1	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Rsc14	PF08586.10	gi|227828016|ref|YP_002829796.1|	-	0.19	12.5	2.8	4.1	8.3	0.7	2.2	2	0	0	2	2	2	0	RSC	complex,	Rsc14/Ldb7	subunit
DUF2897	PF11446.8	gi|227828016|ref|YP_002829796.1|	-	0.47	10.4	5.7	4.3	7.3	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2897)
Ribosomal_L39	PF00832.20	gi|227828017|ref|YP_002829797.1|	-	1.6e-20	72.5	7.5	2.1e-20	72.0	7.5	1.2	1	0	0	1	1	1	1	Ribosomal	L39	protein
Ribosomal_L31e	PF01198.19	gi|227828018|ref|YP_002829798.1|	-	1.4e-07	31.6	2.1	1.8e-07	31.3	2.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
eIF-6	PF01912.18	gi|227828019|ref|YP_002829799.1|	-	2.1e-69	232.9	3.8	2.5e-69	232.7	3.8	1.0	1	0	0	1	1	1	1	eIF-6	family
Nicastrin	PF05450.15	gi|227828019|ref|YP_002829799.1|	-	0.023	14.1	0.0	0.035	13.6	0.0	1.2	1	0	0	1	1	1	0	Nicastrin
Ribosomal_L18A	PF01775.17	gi|227828020|ref|YP_002829800.1|	-	2e-10	40.8	1.3	4.6e-10	39.6	0.9	1.7	1	1	1	2	2	2	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
Prefoldin	PF02996.17	gi|227828021|ref|YP_002829801.1|	-	6.3e-28	97.1	3.9	7.3e-28	96.9	3.9	1.1	1	0	0	1	1	1	1	Prefoldin	subunit
DUF1664	PF07889.12	gi|227828021|ref|YP_002829801.1|	-	0.0008	19.5	1.6	0.06	13.4	0.5	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1664)
Prefoldin_2	PF01920.20	gi|227828021|ref|YP_002829801.1|	-	0.0023	17.9	5.1	0.0061	16.5	0.7	2.1	2	0	0	2	2	2	1	Prefoldin	subunit
Lyase_1	PF00206.20	gi|227828021|ref|YP_002829801.1|	-	0.0034	16.8	0.4	0.0039	16.6	0.4	1.2	1	0	0	1	1	1	1	Lyase
Dynactin_p22	PF07426.11	gi|227828021|ref|YP_002829801.1|	-	0.016	15.0	2.9	1.1	9.2	0.4	2.1	2	0	0	2	2	2	0	Dynactin	subunit	p22
HAMP	PF00672.25	gi|227828021|ref|YP_002829801.1|	-	0.035	14.5	0.0	2.6	8.5	0.0	2.6	2	1	0	2	2	2	0	HAMP	domain
eIF3_N	PF09440.10	gi|227828021|ref|YP_002829801.1|	-	0.042	14.3	1.8	6.1	7.3	0.5	2.1	2	0	0	2	2	2	0	eIF3	subunit	6	N	terminal	domain
BAR	PF03114.18	gi|227828021|ref|YP_002829801.1|	-	0.052	13.2	2.7	1.4	8.5	1.0	2.0	2	0	0	2	2	2	0	BAR	domain
APG17	PF04108.12	gi|227828021|ref|YP_002829801.1|	-	0.055	12.6	3.8	0.1	11.7	0.7	2.0	2	0	0	2	2	2	0	Autophagy	protein	Apg17
Spc24	PF08286.11	gi|227828021|ref|YP_002829801.1|	-	0.055	13.7	2.6	0.93	9.8	1.6	2.1	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
DUF3450	PF11932.8	gi|227828021|ref|YP_002829801.1|	-	0.061	12.6	7.0	0.28	10.5	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Serine_rich	PF08824.10	gi|227828021|ref|YP_002829801.1|	-	0.08	12.9	3.1	0.14	12.1	0.8	2.0	2	0	0	2	2	2	0	Serine	rich	protein	interaction	domain
DUF1759	PF03564.15	gi|227828021|ref|YP_002829801.1|	-	0.13	12.2	1.8	0.22	11.5	0.6	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1759)
Sec8_exocyst	PF04048.14	gi|227828021|ref|YP_002829801.1|	-	0.16	11.9	4.5	0.2	11.6	1.1	2.1	2	0	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Fib_alpha	PF08702.10	gi|227828021|ref|YP_002829801.1|	-	0.22	11.7	6.3	0.13	12.4	1.8	2.0	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
BLOC1_2	PF10046.9	gi|227828021|ref|YP_002829801.1|	-	0.3	11.4	6.8	0.76	10.1	1.1	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
V-ATPase_C	PF03223.15	gi|227828021|ref|YP_002829801.1|	-	0.92	8.8	5.9	3.1	7.1	5.9	1.7	1	1	0	1	1	1	0	V-ATPase	subunit	C
LPP	PF04728.13	gi|227828021|ref|YP_002829801.1|	-	8	6.9	11.9	7.2	7.1	5.6	2.2	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
SecE	PF00584.20	gi|227828022|ref|YP_002829802.1|	-	0.019	14.8	1.2	0.023	14.6	1.2	1.3	1	1	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
TNFR_16_TM	PF18422.1	gi|227828022|ref|YP_002829802.1|	-	1.4	8.9	4.7	2.8	8.0	4.7	1.5	1	0	0	1	1	1	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
Spt5-NGN	PF03439.13	gi|227828023|ref|YP_002829803.1|	-	1.3e-21	76.2	0.1	2.6e-21	75.3	0.0	1.5	2	0	0	2	2	2	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|227828023|ref|YP_002829803.1|	-	1.6e-07	31.1	0.8	1.6e-07	31.1	0.8	2.2	2	0	0	2	2	2	1	KOW	motif
Ribosomal_L11_N	PF03946.14	gi|227828024|ref|YP_002829804.1|	-	1.7e-20	72.6	0.4	3.5e-20	71.6	0.4	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.19	gi|227828024|ref|YP_002829804.1|	-	3.8e-20	72.2	2.0	6.4e-20	71.4	2.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Levi_coat	PF01819.17	gi|227828024|ref|YP_002829804.1|	-	0.059	13.4	0.1	0.069	13.2	0.1	1.3	1	0	0	1	1	1	0	Levivirus	coat	protein
Ribosomal_L1	PF00687.21	gi|227828025|ref|YP_002829805.1|	-	5e-34	117.8	1.6	6e-34	117.6	1.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.20	gi|227828026|ref|YP_002829806.1|	-	1e-24	86.6	0.8	1e-24	86.6	0.8	2.6	3	0	0	3	3	3	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|227828026|ref|YP_002829806.1|	-	3.4e-17	62.2	0.2	6.8e-17	61.2	0.2	1.6	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
Ribosomal_60s	PF00428.19	gi|227828026|ref|YP_002829806.1|	-	0.00051	20.6	3.6	0.00051	20.6	3.6	2.1	2	0	0	2	2	2	1	60s	Acidic	ribosomal	protein
ERK-JNK_inhib	PF15002.6	gi|227828026|ref|YP_002829806.1|	-	1.2	8.8	5.8	1.6	8.4	1.7	2.3	2	0	0	2	2	2	0	ERK	and	JNK	pathways,	inhibitor
Ribosomal_60s	PF00428.19	gi|227828027|ref|YP_002829807.1|	-	4.4e-19	68.9	13.3	5.1e-19	68.7	13.3	1.0	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
EF-hand_14	PF17959.1	gi|227828027|ref|YP_002829807.1|	-	0.0061	16.9	0.2	0.0087	16.4	0.0	1.4	2	0	0	2	2	2	1	EF-hand	domain
DUF3391	PF11871.8	gi|227828027|ref|YP_002829807.1|	-	0.17	12.4	3.5	0.23	12.0	3.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3391)
DUF3484	PF11983.8	gi|227828027|ref|YP_002829807.1|	-	0.53	11.4	4.6	0.67	11.1	4.6	1.4	1	1	0	1	1	1	0	Membrane-attachment	and	polymerisation-promoting	switch
tRNA-synt_2c	PF01411.19	gi|227828028|ref|YP_002829808.1|	-	8.7e-114	381.0	0.1	2.1e-113	379.7	0.0	1.6	2	0	0	2	2	2	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|227828028|ref|YP_002829808.1|	-	6.4e-14	51.8	0.4	1.5e-13	50.6	0.4	1.6	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DUF5616	PF18481.1	gi|227828029|ref|YP_002829809.1|	-	1.4e-22	80.6	1.1	2.1e-22	80.0	1.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5616)
DUF434	PF04256.12	gi|227828029|ref|YP_002829809.1|	-	4.2e-20	71.2	1.0	8.2e-20	70.2	1.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF434)
Arg_repressor	PF01316.21	gi|227828029|ref|YP_002829809.1|	-	0.054	13.3	1.6	0.079	12.7	0.1	2.0	2	0	0	2	2	2	0	Arginine	repressor,	DNA	binding	domain
KH_8	PF17903.1	gi|227828029|ref|YP_002829809.1|	-	0.14	12.3	2.4	1.2	9.2	0.4	2.4	1	1	1	2	2	2	0	Krr1	KH1	domain
DivIC	PF04977.15	gi|227828031|ref|YP_002829811.1|	-	0.12	12.1	4.1	0.31	10.8	4.1	1.7	1	0	0	1	1	1	0	Septum	formation	initiator
LprI	PF07007.12	gi|227828031|ref|YP_002829811.1|	-	0.38	11.5	2.4	0.68	10.6	2.4	1.3	1	0	0	1	1	1	0	Lysozyme	inhibitor	LprI
ThiI	PF02568.14	gi|227828032|ref|YP_002829812.1|	-	6.4e-54	182.5	0.2	2.2e-53	180.8	0.0	1.8	2	0	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|227828032|ref|YP_002829812.1|	-	4.4e-20	72.2	2.6	4.4e-20	72.2	2.6	1.7	2	0	0	2	2	2	1	THUMP	domain
QueC	PF06508.13	gi|227828032|ref|YP_002829812.1|	-	2.5e-06	27.2	0.0	0.00052	19.6	0.0	2.7	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
NAD_synthase	PF02540.17	gi|227828032|ref|YP_002829812.1|	-	0.0013	17.9	0.7	0.063	12.4	0.0	2.4	2	0	0	2	2	2	1	NAD	synthase
ATP_bind_3	PF01171.20	gi|227828032|ref|YP_002829812.1|	-	0.005	16.6	0.0	0.099	12.4	0.0	2.3	1	1	0	1	1	1	1	PP-loop	family
Diphthami_syn_2	PF01902.17	gi|227828032|ref|YP_002829812.1|	-	0.028	13.9	0.1	0.34	10.4	0.0	2.3	2	0	0	2	2	2	0	Diphthamide	synthase
Inos-1-P_synth	PF01658.17	gi|227828033|ref|YP_002829813.1|	-	3.2e-19	69.2	0.2	6.4e-19	68.2	0.0	1.6	2	0	0	2	2	2	1	Myo-inositol-1-phosphate	synthase
NAD_binding_5	PF07994.12	gi|227828033|ref|YP_002829813.1|	-	7.5e-07	28.8	0.9	1.6e-05	24.5	0.0	2.6	2	1	1	3	3	3	1	Myo-inositol-1-phosphate	synthase
Proton_antipo_M	PF00361.20	gi|227828034|ref|YP_002829814.1|	-	2.1e-42	145.3	28.3	2.1e-42	145.3	28.3	2.5	2	1	0	2	2	2	2	Proton-conducting	membrane	transporter
Proton_antipo_M	PF00361.20	gi|227828035|ref|YP_002829815.1|	-	8.3e-78	261.5	67.6	1.4e-47	162.3	31.1	6.0	5	1	2	7	7	7	3	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|227828035|ref|YP_002829815.1|	-	7.6e-08	32.3	9.3	2.4e-05	24.3	1.8	5.5	5	1	0	5	5	5	2	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.24	gi|227828036|ref|YP_002829816.1|	-	5.3e-12	45.3	6.9	7.8e-12	44.8	6.9	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Tetraspanin	PF00335.20	gi|227828036|ref|YP_002829816.1|	-	0.71	9.5	7.2	0.8	9.4	7.2	1.0	1	0	0	1	1	1	0	Tetraspanin	family
Oxidored_q3	PF00499.20	gi|227828037|ref|YP_002829817.1|	-	3.4e-13	49.5	16.7	4.6e-13	49.1	16.7	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF998	PF06197.13	gi|227828037|ref|YP_002829817.1|	-	0.29	10.7	14.5	0.49	10.0	14.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
Trp_oprn_chp	PF09534.10	gi|227828037|ref|YP_002829817.1|	-	0.31	10.8	1.3	0.37	10.6	1.3	1.2	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Fer4	PF00037.27	gi|227828038|ref|YP_002829818.1|	-	8.7e-15	53.8	12.8	3.9e-09	35.9	3.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828038|ref|YP_002829818.1|	-	7.1e-11	42.1	6.8	1.3e-10	41.2	6.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828038|ref|YP_002829818.1|	-	7.1e-10	39.3	9.7	1.3e-09	38.5	9.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828038|ref|YP_002829818.1|	-	2.2e-09	38.1	4.7	0.00024	22.0	0.1	2.4	2	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|227828038|ref|YP_002829818.1|	-	1e-08	35.1	8.0	2.3e-08	34.0	8.2	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828038|ref|YP_002829818.1|	-	1.6e-08	34.6	7.3	2.5e-08	33.9	7.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828038|ref|YP_002829818.1|	-	1e-07	31.7	14.8	0.00033	20.6	2.9	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227828038|ref|YP_002829818.1|	-	1.3e-06	28.1	10.6	0.0038	17.2	2.6	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|227828038|ref|YP_002829818.1|	-	1.5e-05	25.1	9.6	0.021	15.3	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227828038|ref|YP_002829818.1|	-	7.7e-05	23.1	6.5	0.021	15.2	0.4	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|227828038|ref|YP_002829818.1|	-	0.00022	21.9	16.5	0.032	15.2	4.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|227828038|ref|YP_002829818.1|	-	0.00073	20.0	6.4	0.29	11.7	0.7	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|227828038|ref|YP_002829818.1|	-	0.047	13.9	1.3	0.047	13.9	1.3	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
RalF_SCD	PF18248.1	gi|227828038|ref|YP_002829818.1|	-	0.082	12.9	0.0	0.2	11.6	0.0	1.9	1	1	1	2	2	2	0	RalF	C-terminal	Sec-7	capping	domain
Fer4_13	PF13370.6	gi|227828038|ref|YP_002829818.1|	-	0.17	12.5	11.8	0.81	10.3	3.3	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|227828038|ref|YP_002829818.1|	-	0.33	11.8	11.3	1.4	9.8	1.5	2.3	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227828038|ref|YP_002829818.1|	-	0.37	11.6	10.7	1.1	10.0	0.6	2.7	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
ETF_QO	PF05187.13	gi|227828038|ref|YP_002829818.1|	-	0.78	9.9	3.2	1.2	9.4	2.2	1.7	1	1	1	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
NADHdh	PF00146.21	gi|227828039|ref|YP_002829819.1|	-	4.9e-79	265.8	25.7	6.3e-79	265.4	25.7	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Complex1_49kDa	PF00346.19	gi|227828040|ref|YP_002829820.1|	-	9.2e-91	303.7	0.0	1.2e-90	303.3	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|227828040|ref|YP_002829820.1|	-	0.16	10.8	0.0	0.39	9.6	0.0	1.6	2	0	0	2	2	2	0	Nickel-dependent	hydrogenase
Complex1_30kDa	PF00329.19	gi|227828041|ref|YP_002829821.1|	-	4e-33	114.6	0.0	5.8e-33	114.1	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Oxidored_q4	PF00507.19	gi|227828042|ref|YP_002829822.1|	-	1.6e-10	41.0	2.1	2.1e-10	40.6	2.1	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
MWFE	PF15879.5	gi|227828042|ref|YP_002829822.1|	-	0.29	11.3	1.3	0.3	11.3	0.1	1.8	1	1	1	2	2	2	0	NADH-ubiquinone	oxidoreductase	MWFE	subunit
Thy1	PF02511.15	gi|227828043|ref|YP_002829823.1|	-	6.6e-63	211.9	0.7	8.2e-63	211.6	0.7	1.1	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
DUF2175	PF09943.9	gi|227828044|ref|YP_002829824.1|	-	7.7e-29	99.9	2.9	8.6e-29	99.7	2.9	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
Ca_bind_SSO6904	PF18249.1	gi|227828044|ref|YP_002829824.1|	-	0.0099	16.2	1.2	0.04	14.3	0.5	1.9	1	1	1	2	2	2	1	Calcium	binding	protein	SSO6904
V-SNARE	PF05008.15	gi|227828044|ref|YP_002829824.1|	-	0.041	14.3	5.5	0.15	12.4	5.5	1.8	1	1	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
GlcNAc-1_reg	PF18440.1	gi|227828044|ref|YP_002829824.1|	-	0.082	13.2	1.7	0.7	10.2	1.5	2.0	1	1	1	2	2	2	0	Putative	GlcNAc-1	phosphotransferase	regulatory	domain
Vps39_2	PF10367.9	gi|227828044|ref|YP_002829824.1|	-	0.12	12.9	0.6	0.63	10.5	0.0	2.0	2	0	0	2	2	2	0	Vacuolar	sorting	protein	39	domain	2
RapH_N	PF18801.1	gi|227828044|ref|YP_002829824.1|	-	0.16	12.1	2.8	3.5	7.8	0.1	2.2	1	1	1	2	2	2	0	response	regulator	aspartate	phosphatase	H,	N	terminal
Thioredoxin_2	PF13098.6	gi|227828045|ref|YP_002829825.1|	-	0.0061	17.0	1.4	0.15	12.5	0.1	3.0	3	1	1	4	4	4	1	Thioredoxin-like	domain
C5-epim_C	PF06662.13	gi|227828045|ref|YP_002829825.1|	-	0.013	15.0	0.1	13	5.2	0.0	3.3	2	1	1	3	3	3	0	D-glucuronyl	C5-epimerase	C-terminus
Glyco_hydro_88	PF07470.13	gi|227828045|ref|YP_002829825.1|	-	0.062	12.4	0.0	0.44	9.6	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	Hydrolase	Family	88
Iron_permease	PF04120.12	gi|227828045|ref|YP_002829825.1|	-	0.13	12.0	0.2	4.5	7.1	0.0	2.6	3	0	0	3	3	3	0	Low	affinity	iron	permease
DUF364	PF04016.12	gi|227828046|ref|YP_002829826.1|	-	4.9e-25	87.8	0.0	6.8e-25	87.4	0.0	1.2	1	0	0	1	1	1	1	Putative	heavy-metal	chelation
DUF4213	PF13938.6	gi|227828046|ref|YP_002829826.1|	-	4.4e-11	42.9	0.0	7e-11	42.2	0.0	1.3	1	0	0	1	1	1	1	Putative	heavy-metal	chelation
NTP_transferase	PF00483.23	gi|227828047|ref|YP_002829827.1|	-	4.1e-33	115.0	0.0	5.3e-33	114.6	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|227828047|ref|YP_002829827.1|	-	8.4e-11	41.2	4.1	2.1e-05	24.0	0.5	3.5	1	1	2	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|227828047|ref|YP_002829827.1|	-	6.3e-08	33.1	0.0	8.3e-08	32.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Fucokinase	PF07959.12	gi|227828047|ref|YP_002829827.1|	-	0.0015	17.6	0.1	0.0026	16.8	0.1	1.4	1	0	0	1	1	1	1	L-fucokinase
Sod_Fe_C	PF02777.18	gi|227828048|ref|YP_002829828.1|	-	4.6e-33	113.4	1.1	6.8e-33	112.9	1.1	1.2	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.22	gi|227828048|ref|YP_002829828.1|	-	2.7e-29	101.4	0.1	2.7e-29	101.4	0.1	2.0	3	0	0	3	3	3	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
DUF948	PF06103.11	gi|227828049|ref|YP_002829829.1|	-	0.026	14.8	5.3	0.3	11.4	0.8	4.1	3	1	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
PCRF	PF03462.18	gi|227828049|ref|YP_002829829.1|	-	2	8.2	7.2	2.2	8.1	0.4	3.0	2	1	1	3	3	3	0	PCRF	domain
TusA	PF01206.17	gi|227828050|ref|YP_002829830.1|	-	2.3e-05	24.1	0.1	3.4e-05	23.6	0.1	1.5	1	1	0	1	1	1	1	Sulfurtransferase	TusA
Thioredoxin_3	PF13192.6	gi|227828051|ref|YP_002829831.1|	-	8.9e-10	38.5	0.0	2.1e-09	37.3	0.0	1.7	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|227828051|ref|YP_002829831.1|	-	0.00045	20.4	0.0	0.0016	18.6	0.0	2.0	1	1	0	1	1	1	1	Glutaredoxin
Thioredoxin_4	PF13462.6	gi|227828051|ref|YP_002829831.1|	-	0.027	14.6	0.0	0.13	12.4	0.0	2.1	2	0	0	2	2	2	0	Thioredoxin
TetR_C_26	PF17934.1	gi|227828051|ref|YP_002829831.1|	-	0.053	13.9	0.9	1.3	9.4	0.0	2.7	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
Thioredoxin_2	PF13098.6	gi|227828051|ref|YP_002829831.1|	-	0.1	13.1	0.2	5	7.6	0.0	2.7	1	1	1	2	2	2	0	Thioredoxin-like	domain
SesA	PF17107.5	gi|227828051|ref|YP_002829831.1|	-	0.12	12.6	0.1	22	5.3	0.0	2.3	2	0	0	2	2	2	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
Helicase_C_2	PF13307.6	gi|227828052|ref|YP_002829832.1|	-	6.8e-25	88.2	0.2	2.5e-24	86.4	0.0	2.0	2	0	0	2	2	2	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|227828052|ref|YP_002829832.1|	-	1.1e-19	70.7	0.1	3.3e-19	69.2	0.1	1.8	1	1	0	1	1	1	1	DEAD_2
ResIII	PF04851.15	gi|227828052|ref|YP_002829832.1|	-	6.5e-08	32.8	1.0	5.3e-07	29.8	0.1	2.7	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|227828052|ref|YP_002829832.1|	-	2.4e-05	24.2	0.3	0.017	14.9	0.0	3.3	3	1	0	3	3	3	2	DEAD/DEAH	box	helicase
PhoH	PF02562.16	gi|227828052|ref|YP_002829832.1|	-	0.00052	19.5	0.6	0.018	14.5	0.0	3.1	2	1	0	3	3	3	1	PhoH-like	protein
HBB	PF06777.11	gi|227828052|ref|YP_002829832.1|	-	0.0018	18.0	0.4	0.0071	16.0	0.1	2.1	2	1	0	2	2	2	1	Helical	and	beta-bridge	domain
AAA_34	PF13872.6	gi|227828052|ref|YP_002829832.1|	-	0.015	14.2	0.0	0.073	11.9	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	NTP	hydrolase	pore-1
DpaA_N	PF16924.5	gi|227828052|ref|YP_002829832.1|	-	0.08	13.0	0.0	0.65	10.1	0.0	2.4	2	0	0	2	2	2	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
SNF2_N	PF00176.23	gi|227828052|ref|YP_002829832.1|	-	0.18	10.5	0.1	0.31	9.7	0.1	1.3	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
UvrD-helicase	PF00580.21	gi|227828052|ref|YP_002829832.1|	-	0.23	11.0	2.5	7.6	6.0	0.6	3.0	3	0	0	3	3	3	0	UvrD/REP	helicase	N-terminal	domain
Stealth_CR2	PF11380.8	gi|227828052|ref|YP_002829832.1|	-	0.24	11.6	5.5	0.28	11.4	1.0	2.9	4	0	0	4	4	4	0	Stealth	protein	CR2,	conserved	region	2
Rieske	PF00355.26	gi|227828054|ref|YP_002829834.1|	-	9.1e-13	48.0	0.0	1.1e-12	47.7	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|227828054|ref|YP_002829834.1|	-	6.6e-05	22.8	0.0	8.7e-05	22.4	0.0	1.2	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
DHquinase_I	PF01487.15	gi|227828055|ref|YP_002829835.1|	-	6.9e-13	49.4	0.0	1.3e-12	48.4	0.0	1.4	1	1	0	1	1	1	1	Type	I	3-dehydroquinase
tRNA-synt_His	PF13393.6	gi|227828055|ref|YP_002829835.1|	-	0.13	11.5	0.2	1.2	8.3	0.0	2.0	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
EPSP_synthase	PF00275.20	gi|227828056|ref|YP_002829836.1|	-	2.2e-67	227.6	0.0	2.6e-67	227.4	0.0	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
GHMP_kinases_N	PF00288.26	gi|227828057|ref|YP_002829837.1|	-	1e-08	35.3	0.5	2.5e-08	34.0	0.3	1.7	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|227828057|ref|YP_002829837.1|	-	0.00025	21.3	0.1	0.00084	19.7	0.0	1.9	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
Chorismate_synt	PF01264.21	gi|227828058|ref|YP_002829838.1|	-	2.9e-124	414.0	0.0	3.4e-124	413.8	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
Shikimate_dh_N	PF08501.11	gi|227828059|ref|YP_002829839.1|	-	2.5e-23	82.1	0.1	8e-23	80.5	0.0	1.9	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.20	gi|227828059|ref|YP_002829839.1|	-	4.2e-08	33.3	0.1	1.1e-07	31.9	0.0	1.7	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
SDH_C	PF18317.1	gi|227828059|ref|YP_002829839.1|	-	0.00015	21.4	0.0	0.00029	20.5	0.0	1.5	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
DUF1827	PF08860.10	gi|227828059|ref|YP_002829839.1|	-	0.034	14.4	1.5	8.3	6.7	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1827)
Sacchrp_dh_NADP	PF03435.18	gi|227828059|ref|YP_002829839.1|	-	0.084	13.1	0.1	0.17	12.2	0.1	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
DHQ_synthase	PF01761.20	gi|227828060|ref|YP_002829840.1|	-	4.5e-92	307.9	0.0	5.4e-92	307.7	0.0	1.1	1	0	0	1	1	1	1	3-dehydroquinate	synthase
Fe-ADH	PF00465.19	gi|227828060|ref|YP_002829840.1|	-	6.5e-09	35.1	0.4	8.7e-07	28.1	0.0	2.4	2	1	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|227828060|ref|YP_002829840.1|	-	6e-07	29.4	0.0	1.2e-06	28.4	0.0	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DAHP_synth_1	PF00793.20	gi|227828061|ref|YP_002829841.1|	-	2.3e-72	243.2	0.0	3e-72	242.8	0.0	1.1	1	0	0	1	1	1	1	DAHP	synthetase	I	family
NeuB	PF03102.14	gi|227828061|ref|YP_002829841.1|	-	7.9e-10	38.6	0.2	0.00014	21.4	0.0	3.0	2	1	1	3	3	3	3	NeuB	family
PDH	PF02153.17	gi|227828062|ref|YP_002829842.1|	-	1.8e-21	76.3	0.0	3.3e-21	75.5	0.0	1.4	1	0	0	1	1	1	1	Prephenate	dehydrogenase
CM_2	PF01817.21	gi|227828062|ref|YP_002829842.1|	-	2.2e-15	56.7	0.2	4.7e-15	55.7	0.2	1.6	1	0	0	1	1	1	1	Chorismate	mutase	type	II
F420_oxidored	PF03807.17	gi|227828062|ref|YP_002829842.1|	-	4e-12	46.6	0.0	9.1e-12	45.4	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|227828062|ref|YP_002829842.1|	-	3.8e-06	27.0	0.1	1.2e-05	25.4	0.0	1.9	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_2	PF03446.15	gi|227828062|ref|YP_002829842.1|	-	0.0036	17.5	0.0	0.0096	16.1	0.0	1.7	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|227828062|ref|YP_002829842.1|	-	0.0051	16.4	0.0	0.0098	15.5	0.0	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
3HCDH_N	PF02737.18	gi|227828062|ref|YP_002829842.1|	-	0.023	14.6	0.1	1.2	9.0	0.0	2.5	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
PglD_N	PF17836.1	gi|227828062|ref|YP_002829842.1|	-	0.024	15.2	0.7	0.12	13.0	0.1	2.5	3	0	0	3	3	3	0	PglD	N-terminal	domain
HHH_4	PF14490.6	gi|227828062|ref|YP_002829842.1|	-	0.12	12.4	0.1	0.34	10.9	0.1	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	containing	domain
2-Hacid_dh_C	PF02826.19	gi|227828062|ref|YP_002829842.1|	-	0.16	11.3	0.0	0.3	10.4	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF1359	PF07097.11	gi|227828062|ref|YP_002829842.1|	-	0.26	11.6	4.1	6.2	7.1	0.5	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1359)
Transket_pyr	PF02779.24	gi|227828063|ref|YP_002829843.1|	-	3.9e-36	124.4	0.0	6e-36	123.8	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|227828063|ref|YP_002829843.1|	-	2.5e-28	98.4	0.1	8.1e-28	96.8	0.0	1.9	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|227828063|ref|YP_002829843.1|	-	0.00051	20.3	0.0	0.001	19.3	0.0	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Imm75	PF15660.6	gi|227828063|ref|YP_002829843.1|	-	0.086	13.1	0.1	5	7.5	0.0	2.4	2	0	0	2	2	2	0	Putative	Immunity	protein	75
Transketolase_N	PF00456.21	gi|227828064|ref|YP_002829844.1|	-	2.4e-38	132.0	0.1	4.7e-38	131.0	0.1	1.4	1	1	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.6	gi|227828064|ref|YP_002829844.1|	-	6.2e-09	35.5	0.2	3.4e-06	26.5	0.2	2.2	1	1	1	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.21	gi|227828064|ref|YP_002829844.1|	-	9.5e-08	32.0	0.9	2.1e-06	27.6	0.8	2.4	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.20	gi|227828064|ref|YP_002829844.1|	-	3.9e-07	29.3	0.0	6.5e-07	28.6	0.0	1.3	1	0	0	1	1	1	1	Dehydrogenase	E1	component
XFP_N	PF09364.10	gi|227828064|ref|YP_002829844.1|	-	0.0036	16.2	0.1	0.0046	15.8	0.1	1.2	1	0	0	1	1	1	1	XFP	N-terminal	domain
ThiF	PF00899.21	gi|227828065|ref|YP_002829845.1|	-	5.4e-50	170.0	0.3	7.3e-50	169.6	0.3	1.1	1	0	0	1	1	1	1	ThiF	family
TrkA_N	PF02254.18	gi|227828065|ref|YP_002829845.1|	-	0.0068	16.7	0.2	0.016	15.4	0.2	1.6	1	0	0	1	1	1	1	TrkA-N	domain
2-Hacid_dh_C	PF02826.19	gi|227828065|ref|YP_002829845.1|	-	0.017	14.5	0.0	0.036	13.4	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|227828065|ref|YP_002829845.1|	-	0.022	15.0	1.9	0.12	12.6	1.9	2.1	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Shikimate_DH	PF01488.20	gi|227828065|ref|YP_002829845.1|	-	0.069	13.2	0.4	0.15	12.1	0.4	1.7	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.16	gi|227828065|ref|YP_002829845.1|	-	0.076	12.7	0.1	0.12	12.0	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|227828065|ref|YP_002829845.1|	-	0.17	11.7	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Plasmod_dom_1	PF09715.10	gi|227828065|ref|YP_002829845.1|	-	1.9	8.6	4.9	12	6.0	0.9	2.8	1	1	1	2	2	2	0	Plasmodium	protein	of	unknown	function	(Plasmod_dom_1)
LPG_synthase_TM	PF03706.13	gi|227828066|ref|YP_002829846.1|	-	2.5e-07	30.5	11.6	4.3e-07	29.8	11.3	1.5	1	1	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Pcc1	PF09341.10	gi|227828068|ref|YP_002829848.1|	-	0.0051	16.9	0.0	0.0063	16.6	0.0	1.3	1	1	0	1	1	1	1	Transcription	factor	Pcc1
Ribosomal_L16	PF00252.18	gi|227828069|ref|YP_002829849.1|	-	1.7e-30	105.7	0.1	2e-30	105.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
Diphthamide_syn	PF01866.17	gi|227828070|ref|YP_002829850.1|	-	1.1e-79	268.0	0.0	1.3e-79	267.8	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
TraT	PF05818.12	gi|227828070|ref|YP_002829850.1|	-	0.00053	19.7	0.0	0.0018	18.0	0.0	1.8	2	0	0	2	2	2	1	Enterobacterial	TraT	complement	resistance	protein
UPF0180	PF03698.13	gi|227828070|ref|YP_002829850.1|	-	0.037	14.2	0.0	2.1	8.6	0.0	2.8	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0180)
Abhydrolase_5	PF12695.7	gi|227828070|ref|YP_002829850.1|	-	0.058	13.1	0.0	2.1	8.1	0.0	2.9	2	1	1	3	3	3	0	Alpha/beta	hydrolase	family
B12-binding	PF02310.19	gi|227828070|ref|YP_002829850.1|	-	0.16	12.0	0.0	26	4.9	0.0	3.4	3	2	1	4	4	4	0	B12	binding	domain
ECR1_N	PF14382.6	gi|227828071|ref|YP_002829851.1|	-	1.6e-09	37.4	0.0	2.9e-09	36.6	0.0	1.5	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
S1	PF00575.23	gi|227828071|ref|YP_002829851.1|	-	0.00041	20.6	0.3	0.0026	18.0	0.3	2.1	1	1	0	1	1	1	1	S1	RNA	binding	domain
Mu-like_Com	PF10122.9	gi|227828071|ref|YP_002829851.1|	-	0.0056	16.1	0.4	0.012	15.1	0.4	1.5	1	0	0	1	1	1	1	Mu-like	prophage	protein	Com
OrfB_Zn_ribbon	PF07282.11	gi|227828071|ref|YP_002829851.1|	-	0.0059	16.5	0.9	0.01	15.7	0.9	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|227828071|ref|YP_002829851.1|	-	0.012	15.6	0.2	0.025	14.6	0.2	1.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF2318	PF10080.9	gi|227828071|ref|YP_002829851.1|	-	0.023	14.8	0.3	0.04	14.1	0.3	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
TF_Zn_Ribbon	PF08271.12	gi|227828071|ref|YP_002829851.1|	-	0.32	10.5	1.2	2.9	7.5	1.2	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|227828071|ref|YP_002829851.1|	-	0.38	10.7	4.6	8.5	6.4	0.3	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
zn-ribbon_14	PF16503.5	gi|227828071|ref|YP_002829851.1|	-	0.41	10.2	5.1	2.4	7.8	0.6	2.4	2	0	0	2	2	2	0	Zinc-ribbon
RNA_POL_M_15KD	PF02150.16	gi|227828071|ref|YP_002829851.1|	-	1.6	8.7	4.2	13	5.8	4.6	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
RecR	PF02132.15	gi|227828071|ref|YP_002829851.1|	-	2.1	8.0	4.9	3.8	7.1	0.4	2.3	1	1	1	2	2	2	0	RecR	protein
zinc_ribbon_2	PF13240.6	gi|227828071|ref|YP_002829851.1|	-	5.3	6.9	5.5	31	4.5	0.3	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
RNA_pol_L_2	PF13656.6	gi|227828072|ref|YP_002829852.1|	-	4.6e-21	74.4	0.0	5.4e-21	74.1	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|227828072|ref|YP_002829852.1|	-	1.5e-09	37.1	0.0	2.2e-09	36.6	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
DUF5411	PF17424.2	gi|227828073|ref|YP_002829853.1|	-	0.022	14.7	0.1	0.026	14.5	0.1	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5411)
TFIIS_C	PF01096.18	gi|227828074|ref|YP_002829854.1|	-	5.8e-22	77.3	14.1	4.1e-21	74.6	2.1	3.2	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|227828074|ref|YP_002829854.1|	-	1.1e-10	41.2	4.9	1.1e-10	41.2	4.9	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|227828074|ref|YP_002829854.1|	-	1.7e-06	27.9	10.5	0.0015	18.4	0.8	2.4	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
DUF2387	PF09526.10	gi|227828074|ref|YP_002829854.1|	-	1.9e-05	24.7	8.7	0.0033	17.5	2.7	2.3	1	1	1	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
TF_Zn_Ribbon	PF08271.12	gi|227828074|ref|YP_002829854.1|	-	2.3e-05	23.8	8.4	0.017	14.6	3.2	2.9	2	1	0	2	2	2	2	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|227828074|ref|YP_002829854.1|	-	0.00061	19.9	13.0	0.58	10.3	0.1	4.3	3	1	0	4	4	4	1	Zinc	ribbon	domain
Desulfoferrod_N	PF06397.12	gi|227828074|ref|YP_002829854.1|	-	0.0022	17.6	2.3	1.4	8.6	0.1	2.5	2	0	0	2	2	2	2	Desulfoferrodoxin,	N-terminal	domain
zf-TFIIB	PF13453.6	gi|227828074|ref|YP_002829854.1|	-	0.0026	17.1	1.7	0.0026	17.1	1.7	2.7	2	1	0	2	2	2	1	Transcription	factor	zinc-finger
DZR	PF12773.7	gi|227828074|ref|YP_002829854.1|	-	0.003	17.5	11.6	0.008	16.2	1.6	2.9	2	1	1	3	3	3	1	Double	zinc	ribbon
Rep_fac-A_C	PF08646.10	gi|227828074|ref|YP_002829854.1|	-	0.0052	16.5	1.4	0.0052	16.5	1.4	2.1	1	1	0	2	2	2	1	Replication	factor-A	C	terminal	domain
Zn_ribbon_recom	PF13408.6	gi|227828074|ref|YP_002829854.1|	-	0.007	16.8	1.0	0.007	16.8	1.0	2.3	2	1	0	2	2	2	1	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_10	PF10058.9	gi|227828074|ref|YP_002829854.1|	-	0.01	15.6	12.4	0.11	12.2	3.4	2.9	2	2	0	2	2	2	2	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
eIF-5_eIF-2B	PF01873.17	gi|227828074|ref|YP_002829854.1|	-	0.022	14.6	7.3	0.11	12.4	0.2	2.4	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
IBR	PF01485.21	gi|227828074|ref|YP_002829854.1|	-	0.027	14.7	3.8	0.027	14.7	3.8	2.9	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
Zn_Tnp_IS1	PF03811.13	gi|227828074|ref|YP_002829854.1|	-	0.029	14.1	8.8	0.9	9.3	1.7	3.2	3	1	0	3	3	3	0	InsA	N-terminal	domain
DNA_ligase_ZBD	PF03119.16	gi|227828074|ref|YP_002829854.1|	-	0.03	14.3	4.3	0.067	13.2	0.2	2.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-Mss51	PF13824.6	gi|227828074|ref|YP_002829854.1|	-	0.033	14.3	7.0	1.8	8.7	0.3	2.3	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
OrfB_Zn_ribbon	PF07282.11	gi|227828074|ref|YP_002829854.1|	-	0.037	14.0	12.0	0.15	12.0	3.0	2.8	2	1	1	3	3	3	0	Putative	transposase	DNA-binding	domain
C1_1	PF00130.22	gi|227828074|ref|YP_002829854.1|	-	0.046	13.6	7.2	0.087	12.7	1.8	2.8	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zinc-ribbons_6	PF07191.12	gi|227828074|ref|YP_002829854.1|	-	0.058	13.4	1.3	0.058	13.4	1.3	2.8	2	1	0	2	2	2	0	zinc-ribbons
Nudix_N_2	PF14803.6	gi|227828074|ref|YP_002829854.1|	-	0.08	12.9	11.0	0.25	11.3	2.8	3.4	3	1	0	3	3	3	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|227828074|ref|YP_002829854.1|	-	0.1	12.2	13.5	3	7.5	0.2	4.2	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|227828074|ref|YP_002829854.1|	-	0.25	11.1	20.4	2.7	7.8	0.9	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|227828074|ref|YP_002829854.1|	-	0.25	10.8	17.1	1.1	8.8	0.3	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|227828074|ref|YP_002829854.1|	-	0.26	11.4	12.4	1.4	9.0	0.2	3.9	2	2	2	4	4	4	0	Transposase	zinc-binding	domain
PHD_Oberon	PF07227.11	gi|227828074|ref|YP_002829854.1|	-	0.31	10.9	5.2	0.11	12.4	1.2	1.9	1	1	1	2	2	2	0	PHD	-	plant	homeodomain	finger	protein
UCH_1	PF13423.6	gi|227828074|ref|YP_002829854.1|	-	0.45	10.1	2.9	0.5	9.9	2.9	1.2	1	0	0	1	1	1	0	Ubiquitin	carboxyl-terminal	hydrolase
zf-H2C2_2	PF13465.6	gi|227828074|ref|YP_002829854.1|	-	0.46	11.0	16.7	3	8.4	0.6	4.1	4	0	0	4	4	4	0	Zinc-finger	double	domain
RNHCP	PF12647.7	gi|227828074|ref|YP_002829854.1|	-	0.5	10.4	4.3	3.5	7.7	0.5	2.7	3	0	0	3	3	2	0	RNHCP	domain
zf-C4_Topoisom	PF01396.19	gi|227828074|ref|YP_002829854.1|	-	0.63	9.9	15.5	0.28	11.0	4.2	3.5	3	1	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ACC	PF17848.1	gi|227828074|ref|YP_002829854.1|	-	0.73	10.0	14.3	7.5	6.7	0.2	4.2	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_ribbon_SprT	PF17283.2	gi|227828074|ref|YP_002829854.1|	-	1.9	8.4	17.2	1.4	8.9	4.1	3.5	2	2	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|227828074|ref|YP_002829854.1|	-	2.4	8.1	21.3	0.57	10.1	0.8	4.5	3	2	0	3	3	3	0	zinc-ribbon	domain
PADR1	PF08063.12	gi|227828074|ref|YP_002829854.1|	-	2.8	7.8	10.6	10	6.0	3.5	3.3	3	1	0	3	3	3	0	PADR1	(NUC008)	domain
HalOD2	PF18547.1	gi|227828074|ref|YP_002829854.1|	-	3.1	7.8	0.0	3.1	7.8	0.0	3.0	4	0	0	4	4	3	0	Halobacterial	output	domain	2
zf-piccolo	PF05715.13	gi|227828074|ref|YP_002829854.1|	-	4.1	7.6	11.0	4.1	7.6	2.5	2.6	2	1	0	2	2	2	0	Piccolo	Zn-finger
zf-NADH-PPase	PF09297.11	gi|227828074|ref|YP_002829854.1|	-	4.7	6.9	9.2	12	5.7	0.0	3.7	4	0	0	4	4	4	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C2H2_11	PF16622.5	gi|227828074|ref|YP_002829854.1|	-	4.8	7.0	8.6	1.3	8.9	0.2	2.6	3	0	0	3	3	2	0	zinc-finger	C2H2-type
Rubredoxin_2	PF18073.1	gi|227828074|ref|YP_002829854.1|	-	6.5	6.6	19.2	0.89	9.3	0.7	4.1	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
PhnA_Zn_Ribbon	PF08274.12	gi|227828074|ref|YP_002829854.1|	-	9.9	6.2	11.3	42	4.2	1.2	3.5	2	2	0	2	2	2	0	PhnA	Zinc-Ribbon
Sugar_tr	PF00083.24	gi|227828075|ref|YP_002829855.1|	-	9.8e-43	146.6	21.4	1.3e-42	146.2	21.4	1.2	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227828075|ref|YP_002829855.1|	-	6.7e-29	100.9	50.7	6.2e-25	87.9	22.7	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1129	PF06570.11	gi|227828075|ref|YP_002829855.1|	-	0.74	9.3	7.5	0.34	10.4	3.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
Phage_integr_3	PF16795.5	gi|227828076|ref|YP_002829856.1|	-	9.8e-57	191.3	1.7	1.5e-56	190.7	0.2	1.9	1	1	2	3	3	3	1	Archaeal	phage	integrase
HHH_9	PF17674.1	gi|227828076|ref|YP_002829856.1|	-	0.0011	19.8	0.1	8.2	7.4	0.0	3.3	3	0	0	3	3	3	2	HHH	domain
USP8_dimer	PF08969.11	gi|227828076|ref|YP_002829856.1|	-	0.0038	17.4	1.9	0.0098	16.1	2.0	1.6	2	0	0	2	2	2	1	USP8	dimerisation	domain
BAF	PF02961.14	gi|227828076|ref|YP_002829856.1|	-	0.005	17.2	0.5	7.3	7.1	0.0	3.4	2	2	1	3	3	3	1	Barrier	to	autointegration	factor
Phage_integrase	PF00589.22	gi|227828076|ref|YP_002829856.1|	-	0.009	15.8	0.4	5.1	6.9	0.1	2.7	2	1	1	3	3	3	2	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|227828076|ref|YP_002829856.1|	-	0.08	13.4	1.7	0.24	11.9	0.1	2.6	3	1	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|227828076|ref|YP_002829856.1|	-	0.12	12.7	0.7	2.3	8.6	0.1	2.7	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
Zot	PF05707.12	gi|227828077|ref|YP_002829857.1|	-	0.002	17.8	2.4	0.086	12.5	2.4	2.2	1	1	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_22	PF13401.6	gi|227828077|ref|YP_002829857.1|	-	0.034	14.4	0.3	0.13	12.5	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|227828077|ref|YP_002829857.1|	-	0.065	12.9	0.9	0.11	12.2	0.9	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|227828077|ref|YP_002829857.1|	-	0.1	13.0	0.0	0.22	11.9	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|227828077|ref|YP_002829857.1|	-	0.13	12.8	0.4	0.55	10.8	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
Proteasom_PSMB	PF10508.9	gi|227828078|ref|YP_002829858.1|	-	0.014	13.9	0.0	0.015	13.8	0.0	1.0	1	0	0	1	1	1	0	Proteasome	non-ATPase	26S	subunit
SlyX	PF04102.12	gi|227828078|ref|YP_002829858.1|	-	0.019	15.6	0.6	0.039	14.6	0.6	1.5	1	0	0	1	1	1	0	SlyX
Myc-LZ	PF02344.15	gi|227828078|ref|YP_002829858.1|	-	0.019	15.1	1.1	0.046	13.8	1.1	1.6	1	0	0	1	1	1	0	Myc	leucine	zipper	domain
IFP_35_N	PF07334.13	gi|227828078|ref|YP_002829858.1|	-	0.023	14.8	1.1	0.041	14.0	1.1	1.5	1	0	0	1	1	1	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
Herpes_UL6	PF01763.16	gi|227828078|ref|YP_002829858.1|	-	0.061	11.8	0.3	0.073	11.6	0.3	1.1	1	0	0	1	1	1	0	Herpesvirus	UL6	like
bZIP_2	PF07716.15	gi|227828078|ref|YP_002829858.1|	-	0.095	12.8	4.1	0.21	11.7	4.1	1.6	1	0	0	1	1	1	0	Basic	region	leucine	zipper
HALZ	PF02183.18	gi|227828078|ref|YP_002829858.1|	-	0.11	12.8	3.7	0.21	11.8	3.7	1.5	1	0	0	1	1	1	0	Homeobox	associated	leucine	zipper
NYD-SP28_assoc	PF14775.6	gi|227828078|ref|YP_002829858.1|	-	0.32	11.1	2.9	0.42	10.8	1.9	1.7	2	0	0	2	2	2	0	Sperm	tail	C-terminal	domain
DivIC	PF04977.15	gi|227828078|ref|YP_002829858.1|	-	0.6	9.9	5.7	1.2	9.0	5.7	1.5	1	0	0	1	1	1	0	Septum	formation	initiator
B277	PF17623.2	gi|227828079|ref|YP_002829859.1|	-	2.1e-157	522.3	4.1	2.3e-157	522.2	4.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function
FtsX_ECD	PF18075.1	gi|227828079|ref|YP_002829859.1|	-	0.38	11.4	3.8	0.71	10.5	3.8	1.4	1	0	0	1	1	1	0	FtsX	extracellular	domain
Cation_ATPase_C	PF00689.21	gi|227828080|ref|YP_002829860.1|	-	0.074	12.8	0.1	0.09	12.5	0.1	1.2	1	0	0	1	1	1	0	Cation	transporting	ATPase,	C-terminus
DUF5493	PF17597.2	gi|227828081|ref|YP_002829861.1|	-	7e-43	144.8	9.3	7.7e-43	144.7	9.3	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5493)
DUF4337	PF14235.6	gi|227828081|ref|YP_002829861.1|	-	0.04	14.0	1.4	0.04	14.0	1.4	1.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4337)
DUF2530	PF10745.9	gi|227828081|ref|YP_002829861.1|	-	1.5	9.1	3.9	0.81	10.0	1.6	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
DUF1035	PF06281.12	gi|227828082|ref|YP_002829862.1|	-	4e-40	135.7	8.4	5.8e-40	135.2	8.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1035)
TMEM208_SND2	PF05620.11	gi|227828082|ref|YP_002829862.1|	-	3	7.6	7.2	4.4	7.1	1.3	2.1	1	1	1	2	2	2	0	SRP-independent	targeting	protein	2/TMEM208
HTH_24	PF13412.6	gi|227828083|ref|YP_002829863.1|	-	5.6e-07	29.0	1.0	5.6e-07	29.0	1.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|227828083|ref|YP_002829863.1|	-	7.8e-06	25.7	2.5	1.5e-05	24.7	2.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|227828083|ref|YP_002829863.1|	-	2e-05	24.6	0.2	2.9e-05	24.0	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|227828083|ref|YP_002829863.1|	-	0.003	17.5	0.7	0.003	17.5	0.7	1.7	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|227828083|ref|YP_002829863.1|	-	0.0056	16.5	0.5	0.013	15.4	0.5	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|227828083|ref|YP_002829863.1|	-	0.011	15.8	0.2	0.02	15.0	0.2	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|227828083|ref|YP_002829863.1|	-	0.014	15.5	0.5	0.025	14.7	0.4	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.16	gi|227828083|ref|YP_002829863.1|	-	0.018	15.4	0.0	0.026	14.9	0.0	1.4	1	1	0	1	1	1	0	Penicillinase	repressor
Lipoprotein_9	PF03180.14	gi|227828083|ref|YP_002829863.1|	-	0.038	13.1	0.1	0.061	12.4	0.1	1.3	1	0	0	1	1	1	0	NLPA	lipoprotein
SOGA	PF11365.8	gi|227828083|ref|YP_002829863.1|	-	0.066	14.3	0.7	2.9	9.1	0.0	2.2	2	0	0	2	2	2	0	Protein	SOGA
Fe_dep_repress	PF01325.19	gi|227828083|ref|YP_002829863.1|	-	0.07	13.3	0.1	0.14	12.4	0.1	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|227828083|ref|YP_002829863.1|	-	0.1	12.5	0.1	0.16	11.9	0.1	1.3	1	0	0	1	1	1	0	MarR	family
FtsK_gamma	PF09397.10	gi|227828083|ref|YP_002829863.1|	-	0.11	12.4	0.1	0.17	11.7	0.1	1.3	1	0	0	1	1	1	0	Ftsk	gamma	domain
C166	PF17615.2	gi|227828084|ref|YP_002829864.1|	-	3.8e-61	205.8	17.5	4.3e-61	205.7	17.5	1.0	1	0	0	1	1	1	1	Family	of	unknown	function
DUF5489	PF17592.2	gi|227828085|ref|YP_002829865.1|	-	4.6e-36	123.2	12.6	5e-36	123.1	12.6	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5489)
DUF417	PF04224.12	gi|227828085|ref|YP_002829865.1|	-	2.9	7.4	7.1	3.5	7.1	7.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
zf-C2H2_2	PF12756.7	gi|227828089|ref|YP_002829869.1|	-	1.1e-05	25.6	3.6	0.0058	16.9	0.2	2.7	1	1	1	2	2	2	2	C2H2	type	zinc-finger	(2	copies)
zf-C2H2	PF00096.26	gi|227828089|ref|YP_002829869.1|	-	2.3e-05	24.6	12.8	0.00042	20.6	0.3	3.0	3	0	0	3	3	3	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|227828089|ref|YP_002829869.1|	-	0.00011	22.8	10.1	0.0042	17.8	0.2	3.2	3	0	0	3	3	2	2	C2H2-type	zinc	finger
zf-met	PF12874.7	gi|227828089|ref|YP_002829869.1|	-	0.00071	19.9	5.6	0.0051	17.2	0.1	3.2	3	1	0	3	3	3	1	Zinc-finger	of	C2H2	type
Zn-C2H2_12	PF18112.1	gi|227828089|ref|YP_002829869.1|	-	0.00086	19.7	4.5	0.084	13.4	0.3	2.5	2	0	0	2	2	2	2	Autophagy	receptor	zinc	finger-C2H2	domain
zf-C2H2_9	PF16293.5	gi|227828089|ref|YP_002829869.1|	-	0.0017	18.2	2.1	0.32	10.9	0.2	2.4	1	1	1	2	2	2	2	C2H2	type	zinc-finger	(1	copy)
HNH_5	PF14279.6	gi|227828089|ref|YP_002829869.1|	-	0.0059	16.5	1.9	0.026	14.4	0.8	2.1	2	0	0	2	2	2	1	HNH	endonuclease
DUF2256	PF10013.9	gi|227828089|ref|YP_002829869.1|	-	0.0076	16.3	0.9	0.18	12.0	0.1	2.3	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
Rad50_zn_hook	PF04423.14	gi|227828089|ref|YP_002829869.1|	-	0.0077	16.0	5.6	0.06	13.2	0.1	2.7	2	1	1	3	3	3	1	Rad50	zinc	hook	motif
Prok-RING_4	PF14447.6	gi|227828089|ref|YP_002829869.1|	-	0.012	15.5	0.7	0.52	10.2	0.0	2.5	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-H2C2_2	PF13465.6	gi|227828089|ref|YP_002829869.1|	-	0.012	16.0	12.9	0.28	11.7	1.8	3.8	3	1	0	3	3	3	0	Zinc-finger	double	domain
zf-RING_2	PF13639.6	gi|227828089|ref|YP_002829869.1|	-	0.012	15.9	5.2	0.57	10.6	2.2	2.3	2	0	0	2	2	2	0	Ring	finger	domain
zf-C2H2_11	PF16622.5	gi|227828089|ref|YP_002829869.1|	-	0.013	15.3	1.9	0.034	13.9	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	C2H2-type
UBZ_FAAP20	PF15750.5	gi|227828089|ref|YP_002829869.1|	-	0.027	14.4	1.6	0.89	9.5	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin-binding	zinc-finger
zf-MYST	PF17772.1	gi|227828089|ref|YP_002829869.1|	-	0.032	13.8	0.2	0.11	12.1	0.2	1.9	1	1	0	1	1	1	0	MYST	family	zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|227828089|ref|YP_002829869.1|	-	0.048	13.8	0.6	0.12	12.6	0.6	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-Di19	PF05605.12	gi|227828089|ref|YP_002829869.1|	-	0.057	13.7	11.3	0.45	10.8	2.4	2.7	2	1	1	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_jaz	PF12171.8	gi|227828089|ref|YP_002829869.1|	-	0.071	13.4	6.2	0.76	10.1	0.0	3.4	3	1	0	3	3	3	0	Zinc-finger	double-stranded	RNA-binding
zf_UBZ	PF18439.1	gi|227828089|ref|YP_002829869.1|	-	0.074	12.7	0.5	4.6	6.9	0.1	2.4	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|227828089|ref|YP_002829869.1|	-	0.085	12.3	0.1	0.085	12.3	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|227828089|ref|YP_002829869.1|	-	0.27	11.3	3.4	4.3	7.4	4.5	2.0	1	1	1	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|227828089|ref|YP_002829869.1|	-	0.52	9.9	5.7	0.19	11.3	0.6	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-RING_5	PF14634.6	gi|227828089|ref|YP_002829869.1|	-	0.57	10.2	5.6	2.5	8.1	3.1	2.3	2	0	0	2	2	2	0	zinc-RING	finger	domain
zf-C2H2_6	PF13912.6	gi|227828089|ref|YP_002829869.1|	-	0.91	9.6	0.1	0.91	9.6	0.1	3.5	4	0	0	4	4	4	0	C2H2-type	zinc	finger
Cas_Cas4	PF01930.17	gi|227828090|ref|YP_002829870.1|	-	3.5e-07	30.5	0.4	4.4e-07	30.1	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|227828090|ref|YP_002829870.1|	-	2.3e-05	24.5	1.0	3.7e-05	23.8	1.0	1.3	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Dna2	PF08696.11	gi|227828090|ref|YP_002829870.1|	-	0.023	14.5	1.8	0.029	14.2	1.8	1.4	1	1	0	1	1	1	0	DNA	replication	factor	Dna2
DUF3799	PF12684.7	gi|227828090|ref|YP_002829870.1|	-	0.064	13.0	1.2	0.23	11.2	1.2	1.6	1	1	0	1	1	1	0	PDDEXK-like	domain	of	unknown	function	(DUF3799)
RACo_linker	PF17650.1	gi|227828090|ref|YP_002829870.1|	-	0.089	12.7	0.0	0.97	9.3	0.0	2.2	2	0	0	2	2	2	0	RACo	linker	region
zf-C2H2	PF00096.26	gi|227828092|ref|YP_002829872.1|	-	0.079	13.5	0.1	0.12	12.9	0.1	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2H2_3rep	PF18868.1	gi|227828092|ref|YP_002829872.1|	-	0.086	13.5	0.0	0.089	13.5	0.0	1.0	1	0	0	1	1	1	0	Zinc	finger	C2H2-type,	3	repeats
zf-C2H2	PF00096.26	gi|227828093|ref|YP_002829873.1|	-	1.5e-05	25.1	6.1	0.00015	22.0	0.9	2.6	2	1	0	2	2	2	1	Zinc	finger,	C2H2	type
zf-Di19	PF05605.12	gi|227828093|ref|YP_002829873.1|	-	0.00014	22.1	1.8	0.0003	21.0	1.8	1.6	1	1	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.6	gi|227828093|ref|YP_002829873.1|	-	0.00056	20.5	5.4	0.11	13.4	0.5	2.8	2	1	0	2	2	2	2	C2H2-type	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|227828093|ref|YP_002829873.1|	-	0.0019	18.1	0.4	1.4	9.1	0.0	2.3	2	0	0	2	2	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-Mss51	PF13824.6	gi|227828093|ref|YP_002829873.1|	-	0.0046	17.0	1.8	0.49	10.5	0.1	2.1	2	0	0	2	2	2	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TF_Zn_Ribbon	PF08271.12	gi|227828093|ref|YP_002829873.1|	-	0.0064	16.0	0.6	2	8.0	0.1	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-C2H2_9	PF16293.5	gi|227828093|ref|YP_002829873.1|	-	0.013	15.3	1.0	1.1	9.1	0.2	2.3	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
PADR1	PF08063.12	gi|227828093|ref|YP_002829873.1|	-	0.016	15.0	1.7	0.098	12.5	0.6	2.1	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
zf-RRN7	PF11781.8	gi|227828093|ref|YP_002829873.1|	-	0.034	13.8	0.7	5.3	6.8	0.3	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-met	PF12874.7	gi|227828093|ref|YP_002829873.1|	-	0.048	14.1	1.2	1.2	9.7	0.0	2.6	2	0	0	2	2	2	0	Zinc-finger	of	C2H2	type
Rubredoxin_2	PF18073.1	gi|227828093|ref|YP_002829873.1|	-	0.063	13.0	1.3	1.5	8.6	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|227828093|ref|YP_002829873.1|	-	0.074	13.2	0.3	0.22	11.7	0.3	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
Zn_ribbon_recom	PF13408.6	gi|227828093|ref|YP_002829873.1|	-	0.076	13.5	3.9	0.77	10.3	0.6	2.1	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-C2HC_2	PF13913.6	gi|227828093|ref|YP_002829873.1|	-	0.085	12.8	1.9	10	6.1	0.3	2.5	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Pes-10	PF07149.11	gi|227828093|ref|YP_002829873.1|	-	0.087	11.9	0.2	0.088	11.9	0.2	1.2	1	0	0	1	1	1	0	Pes-10
Cys_rich_CPCC	PF14206.6	gi|227828093|ref|YP_002829873.1|	-	0.1	12.4	1.8	0.27	11.1	1.8	1.8	1	1	0	1	1	1	0	Cysteine-rich	CPCC
zf-ribbon_3	PF13248.6	gi|227828093|ref|YP_002829873.1|	-	0.12	11.9	3.4	2.7	7.5	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_6	PF13912.6	gi|227828093|ref|YP_002829873.1|	-	0.16	12.0	4.8	1.8	8.6	0.2	3.0	3	0	0	3	3	3	0	C2H2-type	zinc	finger
Lar_restr_allev	PF14354.6	gi|227828093|ref|YP_002829873.1|	-	0.18	12.2	1.2	2.4	8.6	0.1	2.1	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
zf-H2C2_2	PF13465.6	gi|227828093|ref|YP_002829873.1|	-	0.39	11.2	8.1	6.8	7.3	2.8	3.2	3	1	0	3	3	3	0	Zinc-finger	double	domain
zf-met2	PF12907.7	gi|227828093|ref|YP_002829873.1|	-	0.4	10.9	3.2	1.4	9.1	0.1	2.5	1	1	1	2	2	2	0	Zinc-binding
Zn-C2H2_12	PF18112.1	gi|227828093|ref|YP_002829873.1|	-	1.2	9.6	8.8	3.7	8.1	1.6	2.9	2	1	1	3	3	3	0	Autophagy	receptor	zinc	finger-C2H2	domain
DUF3797	PF12677.7	gi|227828093|ref|YP_002829873.1|	-	1.5	8.8	7.0	0.58	10.1	1.6	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
RNF220	PF15926.5	gi|227828093|ref|YP_002829873.1|	-	2	8.0	3.7	3.1	7.3	0.3	2.0	1	1	1	2	2	2	0	E3	ubiquitin-protein	ligase	RNF220
zf-C3HC4_3	PF13920.6	gi|227828093|ref|YP_002829873.1|	-	4.7	7.2	7.9	3.9	7.4	0.5	2.8	2	1	1	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
RHH_1	PF01402.21	gi|227828094|ref|YP_002829874.1|	-	5e-09	35.8	0.0	8.1e-09	35.1	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|227828094|ref|YP_002829874.1|	-	0.00035	20.5	0.1	0.00061	19.7	0.1	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
TraY	PF05509.11	gi|227828094|ref|YP_002829874.1|	-	0.00058	19.8	0.0	0.00093	19.2	0.0	1.3	1	0	0	1	1	1	1	TraY	domain
Calycin_like	PF13944.6	gi|227828094|ref|YP_002829874.1|	-	0.072	13.4	0.0	0.095	13.0	0.0	1.2	1	1	0	1	1	1	0	Calycin-like	beta-barrel	domain
DUF5517	PF17639.2	gi|227828095|ref|YP_002829875.1|	-	1.6e-33	114.9	4.8	1.8e-33	114.9	4.8	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5517)
SIR4_SID	PF16991.5	gi|227828096|ref|YP_002829876.1|	-	0.039	14.0	0.2	0.046	13.8	0.2	1.1	1	0	0	1	1	1	0	Sir4	SID	domain
FA_desaturase_2	PF03405.14	gi|227828096|ref|YP_002829876.1|	-	0.056	12.3	0.1	0.058	12.2	0.1	1.0	1	0	0	1	1	1	0	Fatty	acid	desaturase
RHH_3	PF12651.7	gi|227828096|ref|YP_002829876.1|	-	0.078	13.0	0.3	0.23	11.5	0.3	1.7	1	1	0	1	1	1	0	Ribbon-helix-helix	domain
SMP_C2CD2L	PF18696.1	gi|227828096|ref|YP_002829876.1|	-	0.079	12.8	0.2	0.092	12.6	0.2	1.1	1	0	0	1	1	1	0	Synaptotagmin-like,	mitochondrial	and	lipid-binding	domain
FliS_cochap	PF16522.5	gi|227828098|ref|YP_002829878.1|	-	0.046	13.7	0.1	0.048	13.6	0.1	1.2	1	0	0	1	1	1	0	Flagellar	FLiS	export	co-chaperone,	HP1076
Vps54	PF07928.12	gi|227828098|ref|YP_002829878.1|	-	0.077	13.4	0.1	0.077	13.4	0.1	1.1	1	0	0	1	1	1	0	Vps54-like	protein
DUF4875	PF16175.5	gi|227828098|ref|YP_002829878.1|	-	0.095	12.8	0.1	0.11	12.7	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4875)
CTD_bind	PF04818.13	gi|227828098|ref|YP_002829878.1|	-	0.099	13.5	0.0	0.11	13.4	0.0	1.3	1	1	0	1	1	1	0	RNA	polymerase	II-binding	domain.
MarR	PF01047.22	gi|227828099|ref|YP_002829879.1|	-	0.0001	22.1	0.1	0.00021	21.2	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|227828099|ref|YP_002829879.1|	-	0.00027	20.8	0.6	0.00053	19.8	0.6	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF2250	PF10007.9	gi|227828099|ref|YP_002829879.1|	-	0.00036	20.6	8.5	0.0011	19.1	1.1	2.8	2	1	1	3	3	3	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_45	PF14947.6	gi|227828099|ref|YP_002829879.1|	-	0.00085	19.3	0.9	0.00085	19.3	0.9	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix
Rrf2	PF02082.20	gi|227828099|ref|YP_002829879.1|	-	0.0018	18.6	0.8	0.0049	17.2	0.1	1.9	2	0	0	2	2	2	1	Transcriptional	regulator
PadR	PF03551.14	gi|227828099|ref|YP_002829879.1|	-	0.0032	17.4	0.6	0.0032	17.4	0.6	2.2	2	2	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HxlR	PF01638.17	gi|227828099|ref|YP_002829879.1|	-	0.0051	16.6	0.4	0.0095	15.8	0.4	1.5	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
Replic_Relax	PF13814.6	gi|227828099|ref|YP_002829879.1|	-	0.0051	16.9	0.9	0.0085	16.2	0.9	1.3	1	0	0	1	1	1	1	Replication-relaxation
DUF1495	PF07381.11	gi|227828099|ref|YP_002829879.1|	-	0.0086	15.9	0.4	0.027	14.3	0.2	2.1	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain	(DUF1495)
TrmB	PF01978.19	gi|227828099|ref|YP_002829879.1|	-	0.063	13.2	3.9	0.081	12.8	0.7	2.5	1	1	2	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4743	PF15916.5	gi|227828099|ref|YP_002829879.1|	-	0.12	12.4	0.3	0.19	11.7	0.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4743)
Mrr_N	PF14338.6	gi|227828099|ref|YP_002829879.1|	-	0.39	10.9	5.3	0.52	10.5	0.1	2.4	1	1	0	2	2	2	0	Mrr	N-terminal	domain
YicC_N	PF03755.13	gi|227828101|ref|YP_002829881.1|	-	0.01	16.3	0.3	0.014	15.9	0.3	1.3	1	0	0	1	1	1	0	YicC-like	family,	N-terminal	region
Phage_connect_1	PF05135.13	gi|227828101|ref|YP_002829881.1|	-	0.019	15.5	0.2	0.025	15.1	0.2	1.4	1	0	0	1	1	1	0	Phage	gp6-like	head-tail	connector	protein
Z1	PF10593.9	gi|227828101|ref|YP_002829881.1|	-	0.023	14.2	0.8	0.026	14.0	0.8	1.1	1	0	0	1	1	1	0	Z1	domain
FAM195	PF14799.6	gi|227828101|ref|YP_002829881.1|	-	0.036	14.4	0.4	0.057	13.8	0.4	1.3	1	0	0	1	1	1	0	FAM195	family
DUF3512	PF12024.8	gi|227828101|ref|YP_002829881.1|	-	0.07	12.6	0.0	0.097	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3512)
CdiA_C	PF18451.1	gi|227828101|ref|YP_002829881.1|	-	0.24	11.6	5.4	0.44	10.8	4.5	2.1	1	1	1	2	2	2	0	Contact-dependent	growth	inhibition	CdiA	C-terminal	domain
TetR_C_19	PF17924.1	gi|227828102|ref|YP_002829882.1|	-	0.049	14.2	0.6	0.05	14.2	0.6	1.1	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
DUF1874	PF08960.10	gi|227828103|ref|YP_002829883.1|	-	6.2e-22	77.6	0.1	7.7e-22	77.3	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1874)
VirArc_Nuclease	PF12187.8	gi|227828104|ref|YP_002829884.1|	-	9.6e-99	328.6	9.6	1.1e-98	328.4	9.6	1.0	1	0	0	1	1	1	1	Viral/Archaeal	nuclease
SSV1_ORF_D-335	PF07935.11	gi|227828105|ref|YP_002829885.1|	-	1.7e-31	108.3	2.1	2.3e-31	107.9	2.1	1.2	1	0	0	1	1	1	1	ORF	D-335-like	protein
ABC_tran	PF00005.27	gi|227828106|ref|YP_002829886.1|	-	2.2e-38	131.9	0.1	4.3e-21	75.9	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|227828106|ref|YP_002829886.1|	-	1.8e-13	50.4	9.1	9.4e-06	25.2	0.1	3.7	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|227828106|ref|YP_002829886.1|	-	4.3e-13	49.7	7.1	0.013	15.4	1.2	4.2	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RLI	PF04068.15	gi|227828106|ref|YP_002829886.1|	-	8e-12	44.8	1.6	2e-11	43.5	1.6	1.8	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
Fer4	PF00037.27	gi|227828106|ref|YP_002829886.1|	-	1e-07	31.4	5.7	1e-07	31.4	5.7	2.7	3	0	0	3	3	2	1	4Fe-4S	binding	domain
AAA	PF00004.29	gi|227828106|ref|YP_002829886.1|	-	3.5e-07	30.7	0.1	0.028	14.8	0.0	2.9	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Fer4_10	PF13237.6	gi|227828106|ref|YP_002829886.1|	-	4e-06	26.8	18.8	0.0003	20.9	1.3	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
AAA_14	PF13173.6	gi|227828106|ref|YP_002829886.1|	-	4.6e-06	26.7	3.8	0.0067	16.5	0.2	3.5	3	1	0	3	3	3	2	AAA	domain
AAA_23	PF13476.6	gi|227828106|ref|YP_002829886.1|	-	2.9e-05	24.7	1.7	0.12	12.8	0.2	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|227828106|ref|YP_002829886.1|	-	3.3e-05	24.3	0.0	0.067	13.6	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
Fer4_2	PF12797.7	gi|227828106|ref|YP_002829886.1|	-	0.00013	21.8	2.1	0.00013	21.8	2.1	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|227828106|ref|YP_002829886.1|	-	0.0002	21.5	7.3	0.00035	20.7	7.3	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_24	PF13479.6	gi|227828106|ref|YP_002829886.1|	-	0.0002	21.1	0.1	0.09	12.5	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Fer4_6	PF12837.7	gi|227828106|ref|YP_002829886.1|	-	0.00023	21.1	13.6	0.00023	21.1	3.7	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227828106|ref|YP_002829886.1|	-	0.00023	21.7	1.3	0.00023	21.7	1.3	2.2	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
NACHT	PF05729.12	gi|227828106|ref|YP_002829886.1|	-	0.00053	19.9	0.4	0.33	10.9	0.0	2.6	2	0	0	2	2	2	1	NACHT	domain
AAA_18	PF13238.6	gi|227828106|ref|YP_002829886.1|	-	0.00057	20.4	5.4	0.89	10.1	0.3	3.6	2	2	1	3	3	3	2	AAA	domain
AAA_22	PF13401.6	gi|227828106|ref|YP_002829886.1|	-	0.00066	20.0	2.5	0.89	9.8	0.0	3.3	2	2	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|227828106|ref|YP_002829886.1|	-	0.0007	20.0	0.1	0.63	10.5	0.0	2.7	2	1	0	2	2	2	1	RNA	helicase
Fer4_21	PF14697.6	gi|227828106|ref|YP_002829886.1|	-	0.00071	19.7	9.0	0.0016	18.5	9.0	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Rad17	PF03215.15	gi|227828106|ref|YP_002829886.1|	-	0.0015	18.4	0.1	0.48	10.3	0.0	2.4	2	0	0	2	2	2	1	Rad17	P-loop	domain
Fer4_16	PF13484.6	gi|227828106|ref|YP_002829886.1|	-	0.0022	18.9	4.2	0.0064	17.4	0.2	2.5	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
AAA_33	PF13671.6	gi|227828106|ref|YP_002829886.1|	-	0.0029	17.8	0.4	2.5	8.2	0.0	3.5	2	2	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|227828106|ref|YP_002829886.1|	-	0.0032	17.2	0.3	0.9	9.3	0.0	2.5	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
RsgA_GTPase	PF03193.16	gi|227828106|ref|YP_002829886.1|	-	0.0049	16.8	1.5	2.2	8.2	0.0	2.8	3	0	0	3	3	2	1	RsgA	GTPase
VirE	PF05272.11	gi|227828106|ref|YP_002829886.1|	-	0.013	15.3	0.0	1.6	8.4	0.0	2.4	2	0	0	2	2	2	0	Virulence-associated	protein	E
AAA_29	PF13555.6	gi|227828106|ref|YP_002829886.1|	-	0.029	14.1	0.2	5.6	6.8	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|227828106|ref|YP_002829886.1|	-	0.047	12.9	7.6	1	8.5	0.2	3.4	3	1	1	4	4	4	0	NB-ARC	domain
MobB	PF03205.14	gi|227828106|ref|YP_002829886.1|	-	0.049	13.5	1.4	6.6	6.6	0.0	2.7	3	0	0	3	3	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_13	PF13166.6	gi|227828106|ref|YP_002829886.1|	-	0.054	12.1	0.4	17	3.9	0.0	3.1	3	0	0	3	3	3	0	AAA	domain
TsaE	PF02367.17	gi|227828106|ref|YP_002829886.1|	-	0.08	12.9	0.7	2.2	8.3	0.1	2.6	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_30	PF13604.6	gi|227828106|ref|YP_002829886.1|	-	0.089	12.5	2.0	17	5.1	0.1	3.3	3	1	0	3	3	3	0	AAA	domain
Fer4_8	PF13183.6	gi|227828106|ref|YP_002829886.1|	-	0.099	13.1	0.2	0.099	13.1	0.2	1.9	2	0	0	2	2	1	0	4Fe-4S	dicluster	domain
dNK	PF01712.19	gi|227828106|ref|YP_002829886.1|	-	0.11	12.3	2.1	8.3	6.2	0.2	3.4	3	1	1	4	4	3	0	Deoxynucleoside	kinase
AAA_19	PF13245.6	gi|227828106|ref|YP_002829886.1|	-	0.5	10.7	4.3	13	6.1	0.1	3.0	3	1	0	3	3	2	0	AAA	domain
SRP54	PF00448.22	gi|227828106|ref|YP_002829886.1|	-	0.51	9.9	2.5	25	4.4	0.0	2.8	3	0	0	3	3	2	0	SRP54-type	protein,	GTPase	domain
AAA_17	PF13207.6	gi|227828106|ref|YP_002829886.1|	-	0.52	10.7	1.9	50	4.3	0.1	3.7	3	1	1	4	4	3	0	AAA	domain
NTPase_1	PF03266.15	gi|227828106|ref|YP_002829886.1|	-	0.62	9.9	7.9	11	5.8	0.3	4.0	5	0	0	5	5	4	0	NTPase
Fer4_17	PF13534.6	gi|227828106|ref|YP_002829886.1|	-	0.67	10.5	7.3	2.5	8.7	7.4	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227828106|ref|YP_002829886.1|	-	0.76	10.4	13.5	0.13	12.8	4.0	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
MMR_HSR1	PF01926.23	gi|227828106|ref|YP_002829886.1|	-	0.77	9.9	5.9	5.1	7.2	0.2	3.5	3	1	0	3	3	3	0	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|227828106|ref|YP_002829886.1|	-	0.9	9.2	12.4	14	5.3	0.1	4.1	2	2	1	4	4	4	0	AAA	ATPase	domain
DUF87	PF01935.17	gi|227828106|ref|YP_002829886.1|	-	1.7	8.7	8.0	2.1	8.4	0.0	3.3	3	1	1	4	4	3	0	Helicase	HerA,	central	domain
Fer4_3	PF12798.7	gi|227828106|ref|YP_002829886.1|	-	2.8	9.1	14.3	0.31	12.1	3.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|227828106|ref|YP_002829886.1|	-	4.7	7.8	6.9	0.39	11.3	1.6	1.9	2	0	0	2	2	1	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
ATPase_2	PF01637.18	gi|227828106|ref|YP_002829886.1|	-	5	7.0	9.5	8.3	6.2	0.5	3.2	2	2	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
FBPase_3	PF01950.16	gi|227828107|ref|YP_002829887.1|	-	1.2e-182	607.0	0.0	1.4e-182	606.8	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
Ribosomal_S17e	PF00833.18	gi|227828108|ref|YP_002829888.1|	-	5.6e-13	48.9	4.2	5.8e-13	48.8	4.2	1.1	1	0	0	1	1	1	1	Ribosomal	S17
BAG6	PF12057.8	gi|227828108|ref|YP_002829888.1|	-	0.024	14.3	0.1	0.036	13.7	0.1	1.3	1	1	0	1	1	1	0	BCL2-associated	athanogene	6
LPD29	PF18847.1	gi|227828108|ref|YP_002829888.1|	-	0.03	15.2	1.4	0.035	15.0	1.4	1.1	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	29
Urm1	PF09138.11	gi|227828109|ref|YP_002829889.1|	-	4.8e-07	30.0	0.6	5.4e-07	29.9	0.6	1.1	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
ThiS	PF02597.20	gi|227828109|ref|YP_002829889.1|	-	0.00069	20.2	0.1	0.00084	19.9	0.1	1.2	1	0	0	1	1	1	1	ThiS	family
DUF87	PF01935.17	gi|227828111|ref|YP_002829891.1|	-	2.4e-32	112.9	2.5	2.4e-32	112.9	2.5	2.2	2	1	0	2	2	2	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|227828111|ref|YP_002829891.1|	-	7.4e-14	51.2	0.4	1.4e-06	27.3	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.9	gi|227828111|ref|YP_002829891.1|	-	1.9e-08	33.7	0.1	3.2e-08	32.9	0.1	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|227828111|ref|YP_002829891.1|	-	2.3e-07	30.1	0.2	0.014	14.3	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
PhoH	PF02562.16	gi|227828111|ref|YP_002829891.1|	-	6.9e-07	28.9	0.5	0.0012	18.3	0.0	2.3	2	0	0	2	2	2	2	PhoH-like	protein
Zot	PF05707.12	gi|227828111|ref|YP_002829891.1|	-	1.9e-05	24.4	0.0	0.00057	19.6	0.0	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_22	PF13401.6	gi|227828111|ref|YP_002829891.1|	-	0.00046	20.5	0.0	1.7	8.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
T4SS-DNA_transf	PF02534.14	gi|227828111|ref|YP_002829891.1|	-	0.00065	18.6	1.0	0.075	11.8	0.1	2.3	2	0	0	2	2	2	2	Type	IV	secretory	system	Conjugative	DNA	transfer
DEAD	PF00270.29	gi|227828111|ref|YP_002829891.1|	-	0.00073	19.4	0.0	0.82	9.4	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
TraG-D_C	PF12696.7	gi|227828111|ref|YP_002829891.1|	-	0.0039	17.2	0.0	0.007	16.4	0.0	1.4	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
CbiA	PF01656.23	gi|227828111|ref|YP_002829891.1|	-	0.004	17.2	0.1	0.035	14.1	0.0	2.4	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IPT	PF01745.16	gi|227828111|ref|YP_002829891.1|	-	0.0099	15.3	0.0	0.024	14.0	0.0	1.6	1	0	0	1	1	1	1	Isopentenyl	transferase
ResIII	PF04851.15	gi|227828111|ref|YP_002829891.1|	-	0.011	15.8	0.2	0.069	13.1	0.0	2.2	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|227828111|ref|YP_002829891.1|	-	0.015	15.0	0.0	0.59	9.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_31	PF13614.6	gi|227828111|ref|YP_002829891.1|	-	0.055	13.4	0.1	0.055	13.4	0.1	2.6	3	1	0	4	4	4	0	AAA	domain
ABC_tran	PF00005.27	gi|227828111|ref|YP_002829891.1|	-	0.088	13.3	0.2	1.1	9.8	0.0	2.7	2	1	1	3	3	3	0	ABC	transporter
APS_kinase	PF01583.20	gi|227828111|ref|YP_002829891.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
LpxK	PF02606.14	gi|227828111|ref|YP_002829891.1|	-	0.19	10.8	0.1	0.3	10.1	0.1	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
Cpn60_TCP1	PF00118.24	gi|227828112|ref|YP_002829892.1|	-	2.7e-174	580.4	12.5	3.1e-174	580.2	12.5	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
FeS_assembly_P	PF01883.19	gi|227828112|ref|YP_002829892.1|	-	6.6	7.0	7.0	44	4.4	0.1	4.0	4	0	0	4	4	4	0	Iron-sulfur	cluster	assembly	protein
TF_Zn_Ribbon	PF08271.12	gi|227828113|ref|YP_002829893.1|	-	1.8e-10	40.1	2.7	3.3e-10	39.3	2.7	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-RRN7	PF11781.8	gi|227828113|ref|YP_002829893.1|	-	0.0017	18.0	0.4	0.0029	17.2	0.4	1.4	1	0	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
A2L_zn_ribbon	PF08792.10	gi|227828113|ref|YP_002829893.1|	-	0.0045	16.7	5.4	0.0059	16.3	3.9	2.0	2	0	0	2	2	2	1	A2L	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|227828113|ref|YP_002829893.1|	-	0.0058	16.5	0.3	0.013	15.4	0.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.6	gi|227828113|ref|YP_002829893.1|	-	0.0083	16.5	0.2	0.013	15.9	0.2	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Ribosomal_S27e	PF01667.17	gi|227828113|ref|YP_002829893.1|	-	0.0083	15.8	0.6	0.014	15.1	0.6	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S27
zf-ribbon_3	PF13248.6	gi|227828113|ref|YP_002829893.1|	-	0.036	13.5	2.4	2.8	7.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2318	PF10080.9	gi|227828113|ref|YP_002829893.1|	-	0.089	12.9	0.6	0.15	12.2	0.6	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
RPA_interact_C	PF14768.6	gi|227828113|ref|YP_002829893.1|	-	0.12	13.0	0.1	0.18	12.4	0.0	1.5	2	0	0	2	2	2	0	Replication	protein	A	interacting	C-terminal
Zn_Tnp_IS1595	PF12760.7	gi|227828113|ref|YP_002829893.1|	-	0.22	11.5	2.9	1.4	9.0	0.0	2.5	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Prim_Zn_Ribbon	PF08273.12	gi|227828113|ref|YP_002829893.1|	-	0.23	11.8	5.0	0.88	9.9	5.0	1.9	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zinc_ribbon_2	PF13240.6	gi|227828113|ref|YP_002829893.1|	-	0.3	10.9	3.9	1.6	8.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|227828113|ref|YP_002829893.1|	-	0.4	10.9	1.3	0.68	10.1	1.3	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
tRNA_int_endo	PF01974.17	gi|227828114|ref|YP_002829894.1|	-	4.7e-11	42.6	0.5	7.9e-11	41.9	0.3	1.4	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
Sen15	PF09631.10	gi|227828114|ref|YP_002829894.1|	-	0.00065	19.9	1.1	0.0016	18.7	1.1	1.6	1	1	0	1	1	1	1	Sen15	protein
rpo132	PF12415.8	gi|227828114|ref|YP_002829894.1|	-	0.032	13.5	0.0	0.076	12.3	0.0	1.7	1	0	0	1	1	1	0	Poxvirus	DNA	dependent	RNA	polymerase
tRNA-synt_His	PF13393.6	gi|227828115|ref|YP_002829895.1|	-	3.1e-65	220.5	0.0	3.7e-65	220.2	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.25	gi|227828115|ref|YP_002829895.1|	-	2.2e-14	53.9	0.1	3e-13	50.1	0.1	2.2	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|227828115|ref|YP_002829895.1|	-	3e-11	43.3	0.2	1e-10	41.6	0.2	1.9	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.20	gi|227828115|ref|YP_002829895.1|	-	3.2e-08	33.4	0.0	1.2e-07	31.5	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|227828115|ref|YP_002829895.1|	-	0.00031	20.3	0.0	0.00052	19.5	0.0	1.3	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
RB_B	PF01857.20	gi|227828115|ref|YP_002829895.1|	-	0.012	15.6	1.0	0.028	14.5	1.0	1.5	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Proteasome	PF00227.26	gi|227828116|ref|YP_002829896.1|	-	1e-50	171.8	0.1	1.2e-50	171.6	0.1	1.0	1	0	0	1	1	1	1	Proteasome	subunit
RNA_pol_RpbG	PF16992.5	gi|227828117|ref|YP_002829897.1|	-	4.4e-40	136.5	5.5	5e-40	136.3	5.5	1.0	1	0	0	1	1	1	1	DNA-directed	RNA	polymerase,	subunit	G
2-ph_phosp	PF04029.14	gi|227828117|ref|YP_002829897.1|	-	0.028	13.6	0.0	0.041	13.1	0.0	1.2	1	0	0	1	1	1	0	2-phosphosulpholactate	phosphatase
RNA_pol_Rpb8	PF03870.15	gi|227828117|ref|YP_002829897.1|	-	0.063	13.5	0.4	0.11	12.7	0.4	1.4	1	1	0	1	1	1	0	RNA	polymerase	Rpb8
DUF1229	PF06797.11	gi|227828117|ref|YP_002829897.1|	-	0.14	12.4	3.1	0.24	11.6	3.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1229)
Lsm_C	PF14894.6	gi|227828118|ref|YP_002829898.1|	-	1.5e-31	107.9	0.1	2.9e-31	107.0	0.1	1.5	1	0	0	1	1	1	1	Lsm	C-terminal
LSM	PF01423.22	gi|227828118|ref|YP_002829898.1|	-	5.6e-05	22.8	1.2	0.00049	19.7	1.2	2.2	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|227828118|ref|YP_002829898.1|	-	0.0014	18.7	0.1	0.0026	17.9	0.1	1.5	1	1	0	1	1	1	1	Ataxin	2	SM	domain
LSM14	PF12701.7	gi|227828118|ref|YP_002829898.1|	-	0.021	14.9	0.7	0.053	13.6	0.6	1.9	1	1	0	1	1	1	0	Scd6-like	Sm	domain
TGT	PF01702.18	gi|227828119|ref|YP_002829899.1|	-	4.1e-61	207.1	0.0	5.5e-61	206.7	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
DUF5591	PF17884.1	gi|227828119|ref|YP_002829899.1|	-	0.00052	19.9	2.1	0.00067	19.6	0.0	2.3	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF5591)
PAC2	PF09754.9	gi|227828120|ref|YP_002829900.1|	-	1.5e-32	113.4	0.0	1.7e-32	113.1	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
PUA	PF01472.20	gi|227828121|ref|YP_002829901.1|	-	5.1e-19	68.0	2.2	7e-19	67.6	2.2	1.2	1	0	0	1	1	1	1	PUA	domain
TGT_C2	PF14810.6	gi|227828121|ref|YP_002829901.1|	-	7.5e-10	38.8	0.0	1.6e-09	37.7	0.0	1.6	2	0	0	2	2	2	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
UPF0113	PF03657.13	gi|227828121|ref|YP_002829901.1|	-	5.8e-08	32.9	0.7	1e-07	32.1	0.3	1.7	2	0	0	2	2	2	1	UPF0113	PUA	domain
PUA_3	PF17785.1	gi|227828121|ref|YP_002829901.1|	-	0.0084	15.9	0.1	0.015	15.1	0.1	1.4	1	0	0	1	1	1	1	PUA-like	domain
MazE_antitoxin	PF04014.18	gi|227828121|ref|YP_002829901.1|	-	0.032	14.2	1.5	0.35	10.8	1.5	2.3	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Hint_2	PF13403.6	gi|227828121|ref|YP_002829901.1|	-	0.069	13.5	0.1	0.11	12.8	0.1	1.3	1	0	0	1	1	1	0	Hint	domain
ART	PF01129.18	gi|227828121|ref|YP_002829901.1|	-	0.17	11.1	0.0	0.24	10.7	0.0	1.2	1	0	0	1	1	1	0	NAD:arginine	ADP-ribosyltransferase
AAA	PF00004.29	gi|227828122|ref|YP_002829902.1|	-	1.3e-42	145.4	0.2	2.8e-42	144.3	0.0	1.7	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|227828122|ref|YP_002829902.1|	-	5.4e-15	54.9	0.1	1.3e-14	53.7	0.1	1.7	1	0	0	1	1	1	1	AAA+	lid	domain
Prot_ATP_ID_OB	PF16450.5	gi|227828122|ref|YP_002829902.1|	-	1.6e-11	44.0	0.5	4.3e-11	42.6	0.5	1.8	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_2	PF07724.14	gi|227828122|ref|YP_002829902.1|	-	7.9e-07	29.3	0.0	2.3e-06	27.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|227828122|ref|YP_002829902.1|	-	2.6e-06	27.9	0.1	0.00012	22.5	0.1	2.4	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|227828122|ref|YP_002829902.1|	-	5.4e-06	26.4	0.1	2.9e-05	24.1	0.1	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|227828122|ref|YP_002829902.1|	-	5.4e-06	26.2	0.0	1.8e-05	24.5	0.0	1.8	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|227828122|ref|YP_002829902.1|	-	0.00011	22.5	0.2	0.0069	16.7	0.0	2.6	1	1	1	2	2	2	1	AAA	domain
Prot_ATP_OB_N	PF17758.1	gi|227828122|ref|YP_002829902.1|	-	0.00021	20.9	0.3	0.00056	19.5	0.3	1.7	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	N-terminal	domain
AAA_14	PF13173.6	gi|227828122|ref|YP_002829902.1|	-	0.00031	20.8	0.1	0.0029	17.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.13	gi|227828122|ref|YP_002829902.1|	-	0.00079	18.7	0.0	0.0017	17.6	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Mg_chelatase	PF01078.21	gi|227828122|ref|YP_002829902.1|	-	0.00098	18.6	0.0	0.0025	17.2	0.0	1.7	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|227828122|ref|YP_002829902.1|	-	0.0013	18.5	0.1	0.0031	17.3	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA_28	PF13521.6	gi|227828122|ref|YP_002829902.1|	-	0.0017	18.7	0.0	0.0034	17.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|227828122|ref|YP_002829902.1|	-	0.0027	17.0	0.0	0.0059	15.9	0.0	1.6	1	0	0	1	1	1	1	TIP49	P-loop	domain
RNA_helicase	PF00910.22	gi|227828122|ref|YP_002829902.1|	-	0.0029	18.0	0.0	0.0071	16.7	0.0	1.7	1	0	0	1	1	1	1	RNA	helicase
AAA_33	PF13671.6	gi|227828122|ref|YP_002829902.1|	-	0.0034	17.5	0.0	0.0066	16.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|227828122|ref|YP_002829902.1|	-	0.0044	16.8	0.0	0.0088	15.8	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|227828122|ref|YP_002829902.1|	-	0.008	16.7	0.0	0.023	15.2	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|227828122|ref|YP_002829902.1|	-	0.0098	15.6	0.1	0.054	13.2	0.1	2.4	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|227828122|ref|YP_002829902.1|	-	0.015	14.8	0.0	0.039	13.5	0.0	1.8	2	0	0	2	2	1	0	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|227828122|ref|YP_002829902.1|	-	0.017	15.0	0.1	0.087	12.7	0.1	2.1	2	0	0	2	2	2	0	NACHT	domain
ATPase_2	PF01637.18	gi|227828122|ref|YP_002829902.1|	-	0.018	15.0	0.6	0.33	10.8	0.0	2.6	2	1	1	3	3	2	0	ATPase	domain	predominantly	from	Archaea
TMF_TATA_bd	PF12325.8	gi|227828122|ref|YP_002829902.1|	-	0.02	15.1	7.1	0.076	13.2	0.7	3.1	3	1	0	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
Zeta_toxin	PF06414.12	gi|227828122|ref|YP_002829902.1|	-	0.032	13.5	0.0	0.061	12.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Parvo_NS1	PF01057.17	gi|227828122|ref|YP_002829902.1|	-	0.038	13.1	0.0	0.076	12.1	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Bac_DnaA	PF00308.18	gi|227828122|ref|YP_002829902.1|	-	0.04	13.7	0.0	0.099	12.5	0.0	1.8	1	1	0	1	1	1	0	Bacterial	dnaA	protein
PhoH	PF02562.16	gi|227828122|ref|YP_002829902.1|	-	0.064	12.7	0.1	0.23	10.9	0.1	1.9	2	0	0	2	2	2	0	PhoH-like	protein
AAA_25	PF13481.6	gi|227828122|ref|YP_002829902.1|	-	0.069	12.7	0.1	0.17	11.5	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
SpoOE-like	PF09388.10	gi|227828122|ref|YP_002829902.1|	-	0.071	13.0	0.6	0.071	13.0	0.6	3.2	3	0	0	3	3	3	0	Spo0E	like	sporulation	regulatory	protein
AAA_30	PF13604.6	gi|227828122|ref|YP_002829902.1|	-	0.099	12.4	0.1	0.21	11.3	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|227828122|ref|YP_002829902.1|	-	0.11	12.1	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.27	gi|227828122|ref|YP_002829902.1|	-	0.12	12.9	0.3	0.86	10.1	0.0	2.4	2	1	1	3	3	2	0	ABC	transporter
AFG1_ATPase	PF03969.16	gi|227828122|ref|YP_002829902.1|	-	0.12	11.2	0.0	0.19	10.6	0.0	1.3	1	0	0	1	1	1	0	AFG1-like	ATPase
TsaE	PF02367.17	gi|227828122|ref|YP_002829902.1|	-	0.13	12.3	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DHHA1	PF02272.19	gi|227828122|ref|YP_002829902.1|	-	0.15	12.5	1.0	1.5	9.2	0.1	2.6	2	0	0	2	2	2	0	DHHA1	domain
ATPase	PF06745.13	gi|227828122|ref|YP_002829902.1|	-	0.44	9.9	5.6	0.19	11.0	0.2	2.9	3	1	0	3	3	3	0	KaiC
DUF16	PF01519.16	gi|227828122|ref|YP_002829902.1|	-	0.64	10.5	3.0	1.8	9.1	0.1	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	DUF16
NTPase_1	PF03266.15	gi|227828122|ref|YP_002829902.1|	-	0.74	9.7	4.4	8.6	6.2	0.0	3.4	2	2	2	4	4	4	0	NTPase
bZIP_1	PF00170.21	gi|227828122|ref|YP_002829902.1|	-	1.9	8.7	9.7	0.096	12.8	1.5	2.6	3	0	0	3	3	2	0	bZIP	transcription	factor
FlaC_arch	PF05377.11	gi|227828122|ref|YP_002829902.1|	-	6.5	7.2	9.8	1.1	9.7	1.4	2.8	3	0	0	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
HTH_3	PF01381.22	gi|227828123|ref|YP_002829903.1|	-	6.8e-12	45.3	1.7	1.1e-11	44.6	1.7	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|227828123|ref|YP_002829903.1|	-	2.5e-07	30.6	1.0	4.6e-07	29.7	1.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|227828123|ref|YP_002829903.1|	-	3.1e-07	30.6	0.0	5.3e-07	29.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|227828123|ref|YP_002829903.1|	-	7.9e-07	28.8	0.2	1.5e-06	27.9	0.2	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|227828123|ref|YP_002829903.1|	-	0.0014	18.6	0.4	0.0023	17.9	0.4	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MqsA_antitoxin	PF15731.5	gi|227828123|ref|YP_002829903.1|	-	0.0018	18.3	2.9	0.016	15.3	2.5	2.1	1	1	0	1	1	1	1	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
HTH_11	PF08279.12	gi|227828123|ref|YP_002829903.1|	-	0.014	15.4	0.1	0.026	14.5	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_23	PF13384.6	gi|227828123|ref|YP_002829903.1|	-	0.014	15.2	0.1	0.033	14.0	0.1	1.7	1	1	0	1	1	1	0	Homeodomain-like	domain
Sof1	PF04158.14	gi|227828123|ref|YP_002829903.1|	-	0.034	14.4	3.7	0.19	12.0	0.3	2.2	2	0	0	2	2	2	0	Sof1-like	domain
HTH_26	PF13443.6	gi|227828123|ref|YP_002829903.1|	-	0.052	14.0	0.1	0.1	13.0	0.1	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
RPA_C	PF08784.11	gi|227828123|ref|YP_002829903.1|	-	0.062	14.0	0.1	0.095	13.4	0.1	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Pou	PF00157.17	gi|227828123|ref|YP_002829903.1|	-	0.066	13.2	0.4	0.18	11.8	0.4	1.7	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
DAGK_acc	PF00609.19	gi|227828123|ref|YP_002829903.1|	-	0.068	13.5	0.0	0.086	13.2	0.0	1.3	1	0	0	1	1	1	0	Diacylglycerol	kinase	accessory	domain
YdaS_antitoxin	PF15943.5	gi|227828123|ref|YP_002829903.1|	-	0.12	12.2	0.2	0.21	11.5	0.2	1.4	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
MMR_HSR1	PF01926.23	gi|227828124|ref|YP_002829904.1|	-	3.2e-19	69.1	0.2	7.4e-19	67.9	0.1	1.7	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|227828124|ref|YP_002829904.1|	-	2.5e-15	56.8	0.3	2.5e-15	56.8	0.3	2.1	2	0	0	2	2	2	1	GTP-binding	GTPase	Middle	Region
FeoB_N	PF02421.18	gi|227828124|ref|YP_002829904.1|	-	2.4e-12	46.6	0.1	6.8e-12	45.2	0.1	1.8	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP-bdg_N	PF13167.6	gi|227828124|ref|YP_002829904.1|	-	8.7e-10	39.2	0.4	1.8e-09	38.1	0.4	1.6	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
GTP_EFTU	PF00009.27	gi|227828124|ref|YP_002829904.1|	-	7.2e-09	35.5	0.0	3.1e-05	23.6	0.0	2.7	1	1	1	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
SRPRB	PF09439.10	gi|227828124|ref|YP_002829904.1|	-	5.2e-07	29.3	2.0	5.6e-07	29.2	0.2	1.9	1	1	1	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
Arf	PF00025.21	gi|227828124|ref|YP_002829904.1|	-	6.8e-05	22.4	0.7	0.0002	20.9	0.2	2.0	2	1	0	2	2	2	1	ADP-ribosylation	factor	family
MMR_HSR1_Xtn	PF16897.5	gi|227828124|ref|YP_002829904.1|	-	0.0001	22.3	0.1	0.00029	20.8	0.1	1.8	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
EcKinase	PF02958.20	gi|227828124|ref|YP_002829904.1|	-	0.003	16.9	0.1	0.0045	16.4	0.1	1.2	1	0	0	1	1	1	1	Ecdysteroid	kinase
AAA_23	PF13476.6	gi|227828124|ref|YP_002829904.1|	-	0.0094	16.5	4.2	0.0094	16.5	4.2	2.8	1	1	1	2	2	2	1	AAA	domain
Tk-SP_N-pro	PF18237.1	gi|227828124|ref|YP_002829904.1|	-	0.011	15.7	0.1	0.047	13.7	0.1	2.1	1	0	0	1	1	1	0	Tk-SP	N-propeptide	domain
Dynamin_N	PF00350.23	gi|227828124|ref|YP_002829904.1|	-	0.014	15.4	0.7	0.48	10.5	0.3	2.7	1	1	1	2	2	2	0	Dynamin	family
ABC_tran	PF00005.27	gi|227828124|ref|YP_002829904.1|	-	0.031	14.8	0.5	0.14	12.7	0.3	2.1	1	1	1	2	2	2	0	ABC	transporter
Roc	PF08477.13	gi|227828124|ref|YP_002829904.1|	-	0.068	13.4	0.1	0.52	10.5	0.1	2.3	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
cobW	PF02492.19	gi|227828124|ref|YP_002829904.1|	-	0.42	10.2	2.4	6.9	6.2	0.4	2.5	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Trm56	PF01994.16	gi|227828125|ref|YP_002829905.1|	-	4.9e-48	162.0	0.2	6.4e-48	161.6	0.2	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
SpoU_methylase	PF00588.19	gi|227828125|ref|YP_002829905.1|	-	0.0026	17.9	0.0	0.0035	17.5	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
TFIIE_alpha	PF02002.17	gi|227828126|ref|YP_002829906.1|	-	9.1e-22	76.9	4.1	9.1e-22	76.9	4.1	2.0	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HTH_20	PF12840.7	gi|227828126|ref|YP_002829906.1|	-	0.00011	22.2	0.0	0.00021	21.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|227828126|ref|YP_002829906.1|	-	0.00053	19.8	0.0	0.0011	18.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_9	PF08221.11	gi|227828126|ref|YP_002829906.1|	-	0.00082	19.4	0.2	0.0068	16.5	0.0	2.3	3	0	0	3	3	3	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227828126|ref|YP_002829906.1|	-	0.0024	18.0	0.0	0.0042	17.2	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|227828126|ref|YP_002829906.1|	-	0.0028	17.4	0.0	0.0042	16.9	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|227828126|ref|YP_002829906.1|	-	0.0035	16.9	0.1	0.0059	16.1	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|227828126|ref|YP_002829906.1|	-	0.0036	16.9	0.2	0.0082	15.8	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Sigma70_r3	PF04539.16	gi|227828126|ref|YP_002829906.1|	-	0.004	17.2	0.0	0.01	15.9	0.0	1.7	1	0	0	1	1	1	1	Sigma-70	region	3
HTH_12	PF08461.10	gi|227828126|ref|YP_002829906.1|	-	0.0043	17.0	1.7	0.0052	16.7	0.2	1.9	2	0	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
DUF4423	PF14394.6	gi|227828126|ref|YP_002829906.1|	-	0.0065	16.2	1.1	0.0091	15.7	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
Phage_rep_org_N	PF09681.10	gi|227828126|ref|YP_002829906.1|	-	0.011	15.6	0.3	0.029	14.3	0.0	1.7	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_5	PF01022.20	gi|227828126|ref|YP_002829906.1|	-	0.012	15.4	0.0	0.03	14.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|227828126|ref|YP_002829906.1|	-	0.02	14.9	0.0	0.036	14.0	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|227828126|ref|YP_002829906.1|	-	0.02	14.8	0.0	0.042	13.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|227828126|ref|YP_002829906.1|	-	0.028	14.3	0.1	0.028	14.3	0.1	1.7	2	0	0	2	2	2	0	HTH	domain
Rrf2	PF02082.20	gi|227828126|ref|YP_002829906.1|	-	0.034	14.5	0.0	0.059	13.7	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
LexA_DNA_bind	PF01726.16	gi|227828126|ref|YP_002829906.1|	-	0.034	13.9	0.1	0.1	12.4	0.0	1.8	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|227828126|ref|YP_002829906.1|	-	0.047	13.5	1.5	0.081	12.7	0.1	2.0	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|227828126|ref|YP_002829906.1|	-	0.081	12.9	0.1	0.23	11.4	0.1	1.7	1	0	0	1	1	1	0	MarR	family
TF_Zn_Ribbon	PF08271.12	gi|227828126|ref|YP_002829906.1|	-	0.087	12.4	0.6	0.36	10.4	0.3	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|227828126|ref|YP_002829906.1|	-	0.1	12.6	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PhnA_Zn_Ribbon	PF08274.12	gi|227828126|ref|YP_002829906.1|	-	0.1	12.6	0.1	2.3	8.3	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zinc_ribbon_10	PF10058.9	gi|227828126|ref|YP_002829906.1|	-	0.1	12.3	0.5	0.25	11.1	0.5	1.7	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
RPA_C	PF08784.11	gi|227828126|ref|YP_002829906.1|	-	0.11	13.2	0.0	0.19	12.4	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HR1	PF02185.16	gi|227828126|ref|YP_002829906.1|	-	2.5	8.3	8.1	2.3	8.4	0.1	2.8	3	0	0	3	3	3	0	Hr1	repeat
DNA_methylase	PF00145.17	gi|227828127|ref|YP_002829907.1|	-	4.5e-56	190.6	0.0	1.8e-53	182.0	0.0	2.1	1	1	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|227828127|ref|YP_002829907.1|	-	0.0016	18.0	0.0	0.0027	17.3	0.0	1.5	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
PrmA	PF06325.13	gi|227828127|ref|YP_002829907.1|	-	0.16	11.3	0.1	0.3	10.5	0.1	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DUF2122	PF09895.9	gi|227828128|ref|YP_002829908.1|	-	2.7e-31	108.1	0.1	3.3e-31	107.8	0.1	1.1	1	0	0	1	1	1	1	RecB-family	nuclease	(DUF2122)
SSV1_ORF_D-335	PF07935.11	gi|227828129|ref|YP_002829909.1|	-	3.6e-32	110.5	1.2	4.3e-32	110.2	1.2	1.1	1	0	0	1	1	1	1	ORF	D-335-like	protein
Prim-Pol	PF09250.11	gi|227828130|ref|YP_002829910.1|	-	6.2e-26	91.6	0.0	1.1e-25	90.8	0.0	1.4	1	0	0	1	1	1	1	Bifunctional	DNA	primase/polymerase,	N-terminal
RPA	PF10134.9	gi|227828130|ref|YP_002829910.1|	-	0.014	14.9	0.1	0.026	14.0	0.1	1.4	1	0	0	1	1	1	0	Replication	initiator	protein	A
DUF2624	PF11116.8	gi|227828130|ref|YP_002829910.1|	-	0.095	13.6	0.3	1.8	9.5	0.1	3.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2624)
PriCT_1	PF08708.11	gi|227828130|ref|YP_002829910.1|	-	0.16	11.7	0.0	0.36	10.6	0.0	1.6	1	0	0	1	1	1	0	Primase	C	terminal	1	(PriCT-1)
RHH_1	PF01402.21	gi|227828132|ref|YP_002829912.1|	-	0.045	13.7	0.7	0.068	13.1	0.6	1.3	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
HTH_27	PF13463.6	gi|227828132|ref|YP_002829912.1|	-	0.051	14.1	0.0	0.052	14.0	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Phage_terminase	PF10668.9	gi|227828132|ref|YP_002829912.1|	-	0.063	13.3	0.3	0.19	11.8	0.2	1.7	1	1	1	2	2	2	0	Phage	terminase	small	subunit
RsgA_N	PF16745.5	gi|227828132|ref|YP_002829912.1|	-	0.14	11.9	0.1	0.21	11.4	0.1	1.3	1	0	0	1	1	1	0	RsgA	N-terminal	domain
SapB_2	PF03489.17	gi|227828133|ref|YP_002829913.1|	-	0.14	12.3	0.8	0.22	11.7	0.1	1.7	2	0	0	2	2	2	0	Saposin-like	type	B,	region	2
DUF5420	PF17457.2	gi|227828134|ref|YP_002829914.1|	-	0.047	13.6	0.1	0.051	13.5	0.1	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5420)
UCR_14kD	PF02271.16	gi|227828135|ref|YP_002829915.1|	-	0.033	14.1	0.3	1.1	9.2	0.0	2.4	3	0	0	3	3	3	0	Ubiquinol-cytochrome	C	reductase	complex	14kD	subunit
MazE_antitoxin	PF04014.18	gi|227828136|ref|YP_002829916.1|	-	0.0011	18.8	0.1	0.0018	18.2	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
RHH_3	PF12651.7	gi|227828137|ref|YP_002829917.1|	-	1.8e-06	27.8	1.3	2.3e-06	27.4	1.3	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
RHH_1	PF01402.21	gi|227828137|ref|YP_002829917.1|	-	7.5e-05	22.5	0.2	9.8e-05	22.1	0.2	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF3782	PF12644.7	gi|227828137|ref|YP_002829917.1|	-	0.0028	17.8	0.1	0.003	17.7	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3782)
Phage_clamp_A	PF16790.5	gi|227828137|ref|YP_002829917.1|	-	0.077	13.5	0.9	0.088	13.3	0.9	1.0	1	0	0	1	1	1	0	Bacteriophage	clamp	loader	A	subunit
CopG_antitoxin	PF12441.8	gi|227828137|ref|YP_002829917.1|	-	0.082	13.4	0.1	0.098	13.2	0.1	1.1	1	0	0	1	1	1	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
Phage_integr_3	PF16795.5	gi|227828138|ref|YP_002829918.1|	-	9e-57	191.4	1.1	1.6e-56	190.7	0.2	1.7	2	0	0	2	2	2	1	Archaeal	phage	integrase
Phage_integrase	PF00589.22	gi|227828138|ref|YP_002829918.1|	-	0.002	18.0	0.0	0.69	9.7	0.0	2.6	3	0	0	3	3	3	2	Phage	integrase	family
SWIM	PF04434.17	gi|227828139|ref|YP_002829919.1|	-	1e-06	28.3	0.2	1.7e-06	27.5	0.2	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
Elf1	PF05129.13	gi|227828140|ref|YP_002829920.1|	-	2.3e-19	69.2	0.2	2.9e-19	68.9	0.2	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.6	gi|227828140|ref|YP_002829920.1|	-	0.0006	20.1	0.1	0.0011	19.3	0.1	1.4	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.6	gi|227828140|ref|YP_002829920.1|	-	0.0084	15.5	2.1	0.14	11.6	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|227828140|ref|YP_002829920.1|	-	0.011	15.3	1.8	0.011	15.3	1.8	1.8	2	1	0	2	2	2	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|227828140|ref|YP_002829920.1|	-	0.022	14.9	0.5	0.041	14.0	0.5	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|227828140|ref|YP_002829920.1|	-	0.028	14.3	0.4	0.045	13.7	0.4	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_4	PF13717.6	gi|227828140|ref|YP_002829920.1|	-	0.028	14.3	3.3	0.11	12.5	3.2	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|227828140|ref|YP_002829920.1|	-	0.04	13.9	1.5	1.6	8.8	0.0	2.2	1	1	1	2	2	2	0	CpXC	protein
zf_UBZ	PF18439.1	gi|227828140|ref|YP_002829920.1|	-	0.071	12.7	1.2	0.41	10.3	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
eIF-5_eIF-2B	PF01873.17	gi|227828140|ref|YP_002829920.1|	-	0.085	12.7	1.4	0.11	12.3	0.6	1.6	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
Ribosomal_L32p	PF01783.23	gi|227828140|ref|YP_002829920.1|	-	0.096	13.0	2.0	1.7	9.0	2.0	2.2	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|227828140|ref|YP_002829920.1|	-	0.13	12.2	1.0	0.31	11.0	1.0	1.6	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.20	gi|227828140|ref|YP_002829920.1|	-	0.15	12.1	1.4	0.24	11.4	0.1	1.9	2	0	0	2	2	2	0	Rubredoxin
zf-Mss51	PF13824.6	gi|227828140|ref|YP_002829920.1|	-	0.79	9.9	2.9	1.5	9.0	0.2	2.2	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
PcrB	PF01884.17	gi|227828141|ref|YP_002829921.1|	-	1.2e-51	175.4	0.6	1.5e-51	175.1	0.6	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|227828141|ref|YP_002829921.1|	-	8.5e-07	28.7	0.1	1.4e-06	28.0	0.1	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|227828141|ref|YP_002829921.1|	-	0.0015	17.8	0.5	0.0021	17.4	0.5	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
G3P_antiterm	PF04309.12	gi|227828141|ref|YP_002829921.1|	-	0.0039	16.6	0.0	0.0067	15.9	0.0	1.4	1	0	0	1	1	1	1	Glycerol-3-phosphate	responsive	antiterminator
IMPDH	PF00478.25	gi|227828141|ref|YP_002829921.1|	-	0.021	13.8	0.0	0.18	10.8	0.0	1.9	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
ThiG	PF05690.14	gi|227828141|ref|YP_002829921.1|	-	0.029	13.7	0.3	0.092	12.0	0.3	1.8	2	1	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
DpaA_N	PF16924.5	gi|227828141|ref|YP_002829921.1|	-	0.045	13.9	0.1	0.13	12.4	0.1	1.7	1	0	0	1	1	1	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
Trp_syntA	PF00290.20	gi|227828141|ref|YP_002829921.1|	-	0.06	12.2	0.3	0.095	11.5	0.3	1.3	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
TMP-TENI	PF02581.17	gi|227828141|ref|YP_002829921.1|	-	0.061	12.6	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	Thiamine	monophosphate	synthase
FMN_dh	PF01070.18	gi|227828141|ref|YP_002829921.1|	-	0.14	11.2	0.1	0.19	10.7	0.1	1.1	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
Sec61_beta	PF03911.16	gi|227828142|ref|YP_002829922.1|	-	2.2e-16	59.6	0.3	2.5e-16	59.4	0.3	1.1	1	0	0	1	1	1	1	Sec61beta	family
AsnC_trans_reg	PF01037.21	gi|227828143|ref|YP_002829923.1|	-	6.6e-19	67.7	0.2	7.4e-19	67.5	0.2	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|227828143|ref|YP_002829923.1|	-	0.0087	16.1	0.2	0.016	15.2	0.2	1.4	1	1	0	1	1	1	1	NapD	protein
PRESAN	PF09687.10	gi|227828143|ref|YP_002829923.1|	-	0.014	15.9	0.4	0.018	15.6	0.4	1.1	1	0	0	1	1	1	0	Plasmodium	RESA	N-terminal
GYD	PF08734.11	gi|227828143|ref|YP_002829923.1|	-	0.036	14.0	0.0	0.039	13.9	0.0	1.2	1	0	0	1	1	1	0	GYD	domain
Spore_YhcN_YlaJ	PF09580.10	gi|227828143|ref|YP_002829923.1|	-	0.044	13.9	0.5	0.053	13.6	0.5	1.1	1	0	0	1	1	1	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
DUF1743	PF08489.11	gi|227828144|ref|YP_002829924.1|	-	3.3e-37	127.1	0.0	5.7e-37	126.3	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
Intein_splicing	PF14890.6	gi|227828144|ref|YP_002829924.1|	-	0.0094	15.9	0.3	0.032	14.2	0.3	1.8	1	1	0	1	1	1	1	Intein	splicing	domain
C1_2	PF03107.16	gi|227828144|ref|YP_002829924.1|	-	0.02	15.2	0.2	0.038	14.3	0.2	1.5	1	0	0	1	1	1	0	C1	domain
OrfB_Zn_ribbon	PF07282.11	gi|227828144|ref|YP_002829924.1|	-	0.03	14.2	0.8	0.059	13.3	0.8	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF3477	PF11963.8	gi|227828144|ref|YP_002829924.1|	-	0.069	12.4	0.0	0.1	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3477)
Zn-ribbon_8	PF09723.10	gi|227828144|ref|YP_002829924.1|	-	0.074	13.2	0.3	3.4	7.9	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|227828144|ref|YP_002829924.1|	-	0.21	11.6	1.9	0.39	10.7	1.9	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf_Rg	PF17915.1	gi|227828144|ref|YP_002829924.1|	-	0.49	9.8	4.4	0.96	8.9	4.4	1.4	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
DUF4428	PF14471.6	gi|227828144|ref|YP_002829924.1|	-	0.94	9.5	5.5	2.6	8.1	5.5	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
Cdc6_C	PF09079.11	gi|227828145|ref|YP_002829925.1|	-	4.4e-24	84.3	0.5	1.5e-23	82.6	0.1	2.1	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|227828145|ref|YP_002829925.1|	-	2.6e-13	50.4	0.0	6.5e-13	49.1	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.6	gi|227828145|ref|YP_002829925.1|	-	1.1e-11	45.4	0.1	9.4e-10	39.1	0.0	2.7	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227828145|ref|YP_002829925.1|	-	3.6e-10	40.4	0.0	7.8e-10	39.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|227828145|ref|YP_002829925.1|	-	1.3e-05	24.5	0.0	7.3e-05	22.1	0.0	2.1	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|227828145|ref|YP_002829925.1|	-	1.8e-05	24.3	0.0	3.1e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|227828145|ref|YP_002829925.1|	-	1.8e-05	24.8	7.2	1.8e-05	24.7	2.7	2.6	1	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|227828145|ref|YP_002829925.1|	-	0.0019	17.4	0.0	0.0027	16.9	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
DEAD	PF00270.29	gi|227828145|ref|YP_002829925.1|	-	0.0053	16.5	0.3	2.4	7.9	0.1	2.4	1	1	1	2	2	2	2	DEAD/DEAH	box	helicase
AAA_24	PF13479.6	gi|227828145|ref|YP_002829925.1|	-	0.0088	15.8	0.4	0.036	13.8	0.1	2.0	2	1	0	2	2	2	1	AAA	domain
ResIII	PF04851.15	gi|227828145|ref|YP_002829925.1|	-	0.0095	16.0	0.0	0.02	14.9	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
PIF1	PF05970.14	gi|227828145|ref|YP_002829925.1|	-	0.0095	15.1	0.1	0.038	13.2	0.0	1.8	2	0	0	2	2	2	1	PIF1-like	helicase
RNA_helicase	PF00910.22	gi|227828145|ref|YP_002829925.1|	-	0.01	16.2	0.2	1.1	9.7	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
AAA_32	PF13654.6	gi|227828145|ref|YP_002829925.1|	-	0.015	14.1	0.0	0.015	14.1	0.0	1.8	3	0	0	3	3	3	0	AAA	domain
RFX_DNA_binding	PF02257.15	gi|227828145|ref|YP_002829925.1|	-	0.019	15.6	0.0	0.053	14.2	0.0	1.7	1	0	0	1	1	1	0	RFX	DNA-binding	domain
SMC_N	PF02463.19	gi|227828145|ref|YP_002829925.1|	-	0.04	13.3	0.2	3.8	6.9	0.1	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
NACHT	PF05729.12	gi|227828145|ref|YP_002829925.1|	-	0.041	13.8	0.0	0.097	12.6	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_14	PF13173.6	gi|227828145|ref|YP_002829925.1|	-	0.046	13.8	0.1	0.097	12.7	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|227828145|ref|YP_002829925.1|	-	0.049	12.5	0.0	0.6	9.0	0.0	2.1	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_7	PF12775.7	gi|227828145|ref|YP_002829925.1|	-	0.052	13.1	0.0	0.09	12.3	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_5	PF07728.14	gi|227828145|ref|YP_002829925.1|	-	0.057	13.4	0.0	0.17	11.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_assoc_2	PF16193.5	gi|227828145|ref|YP_002829925.1|	-	0.1	13.0	0.2	0.3	11.4	0.2	1.8	1	0	0	1	1	1	0	AAA	C-terminal	domain
DUF2075	PF09848.9	gi|227828145|ref|YP_002829925.1|	-	0.11	11.7	0.0	0.15	11.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
KAP_NTPase	PF07693.14	gi|227828145|ref|YP_002829925.1|	-	0.11	11.7	2.9	3	7.0	0.3	2.5	2	1	1	3	3	3	0	KAP	family	P-loop	domain
Pox_A32	PF04665.12	gi|227828145|ref|YP_002829925.1|	-	0.12	11.8	2.5	0.24	10.8	2.5	1.5	1	1	0	1	1	1	0	Poxvirus	A32	protein
Bac_DnaA	PF00308.18	gi|227828145|ref|YP_002829925.1|	-	0.2	11.5	1.2	1.5	8.6	1.2	2.2	1	1	0	1	1	1	0	Bacterial	dnaA	protein
PIG-L	PF02585.17	gi|227828145|ref|YP_002829925.1|	-	0.23	12.1	0.3	14	6.3	0.0	3.2	2	1	1	3	3	3	0	GlcNAc-PI	de-N-acetylase
DUF99	PF01949.16	gi|227828146|ref|YP_002829926.1|	-	1.3e-24	86.6	0.3	3.8e-24	85.1	0.3	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF99
Tugs	PF17840.1	gi|227828146|ref|YP_002829926.1|	-	0.025	14.7	0.5	4.2	7.6	0.0	2.4	2	0	0	2	2	2	0	Tethering	Ubl4a	to	BAGS	domain
CTP_transf_like	PF01467.26	gi|227828147|ref|YP_002829927.1|	-	4.7e-07	30.1	0.0	2e-06	28.0	0.0	1.8	1	1	0	1	1	1	1	Cytidylyltransferase-like
SAM_adeno_trans	PF01887.16	gi|227828148|ref|YP_002829928.1|	-	1.5e-73	247.2	0.0	1.6e-73	247.0	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
Ribosomal_L21e	PF01157.18	gi|227828148|ref|YP_002829928.1|	-	0.11	12.3	0.1	0.38	10.6	0.0	1.8	2	0	0	2	2	2	0	Ribosomal	protein	L21e
CYTH	PF01928.21	gi|227828149|ref|YP_002829929.1|	-	4.2e-29	101.7	2.5	5e-29	101.5	2.5	1.2	1	0	0	1	1	1	1	CYTH	domain
Glyoxalase_4	PF13669.6	gi|227828149|ref|YP_002829929.1|	-	0.015	15.5	0.0	0.029	14.7	0.0	1.4	1	0	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Methyltr_RsmB-F	PF01189.17	gi|227828150|ref|YP_002829930.1|	-	7.5e-54	182.4	0.0	1e-53	181.9	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|227828150|ref|YP_002829930.1|	-	1.6e-14	54.1	0.0	3.4e-14	53.1	0.0	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
FtsJ	PF01728.19	gi|227828150|ref|YP_002829930.1|	-	3.2e-06	27.4	0.0	4.6e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.6	gi|227828150|ref|YP_002829930.1|	-	1e-05	25.4	0.0	1.8e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|227828150|ref|YP_002829930.1|	-	0.00037	20.3	0.0	0.00059	19.6	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.20	gi|227828150|ref|YP_002829930.1|	-	0.0038	16.3	0.0	0.0061	15.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Cons_hypoth95	PF03602.15	gi|227828150|ref|YP_002829930.1|	-	0.008	15.8	0.0	0.015	15.0	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_4	PF02390.17	gi|227828150|ref|YP_002829930.1|	-	0.0093	15.5	0.0	0.027	14.0	0.0	1.8	2	0	0	2	2	2	1	Putative	methyltransferase
MSG	PF02349.15	gi|227828150|ref|YP_002829930.1|	-	0.024	14.8	0.0	0.036	14.3	0.0	1.4	1	0	0	1	1	1	0	Major	surface	glycoprotein
Fibrillarin	PF01269.17	gi|227828150|ref|YP_002829930.1|	-	0.026	13.6	0.0	0.046	12.8	0.0	1.3	1	0	0	1	1	1	0	Fibrillarin
Tn7_TnsC_Int	PF11426.8	gi|227828150|ref|YP_002829930.1|	-	0.06	13.5	0.3	0.41	10.8	0.0	2.4	2	0	0	2	2	2	0	Tn7	transposition	regulator	TnsC
Methyltransf_25	PF13649.6	gi|227828150|ref|YP_002829930.1|	-	0.091	13.5	0.0	0.26	12.0	0.0	1.8	2	0	0	2	2	1	0	Methyltransferase	domain
UPF0113	PF03657.13	gi|227828151|ref|YP_002829931.1|	-	0.00016	21.8	0.5	0.0004	20.6	0.5	1.7	2	0	0	2	2	2	1	UPF0113	PUA	domain
Rad51	PF08423.11	gi|227828152|ref|YP_002829932.1|	-	6.2e-90	300.9	0.0	7.4e-90	300.7	0.0	1.1	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|227828152|ref|YP_002829932.1|	-	6.1e-18	65.2	0.1	8.1e-18	64.8	0.1	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|227828152|ref|YP_002829932.1|	-	1.1e-10	41.3	0.0	1.8e-10	40.6	0.0	1.3	1	0	0	1	1	1	1	KaiC
HHH_5	PF14520.6	gi|227828152|ref|YP_002829932.1|	-	1.1e-08	35.6	0.3	3.4e-08	34.0	0.3	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
AAA_25	PF13481.6	gi|227828152|ref|YP_002829932.1|	-	1.5e-07	31.2	0.0	2.3e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|227828152|ref|YP_002829932.1|	-	2e-05	24.4	0.1	0.00055	19.7	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|227828152|ref|YP_002829932.1|	-	0.0012	19.3	0.0	0.0023	18.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|227828152|ref|YP_002829932.1|	-	0.0096	16.2	0.0	0.018	15.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Cdd1	PF11731.8	gi|227828152|ref|YP_002829932.1|	-	0.048	13.9	0.0	0.1	12.8	0.0	1.5	1	0	0	1	1	1	0	Pathogenicity	locus
HHH_2	PF12826.7	gi|227828152|ref|YP_002829932.1|	-	0.13	12.3	0.1	1.2	9.2	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
HIT	PF01230.23	gi|227828153|ref|YP_002829933.1|	-	1.6e-12	48.0	0.0	3e-12	47.1	0.0	1.5	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|227828153|ref|YP_002829933.1|	-	7e-08	32.9	0.0	1.1e-07	32.3	0.0	1.3	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|227828153|ref|YP_002829933.1|	-	3.2e-07	30.2	0.2	5e-07	29.6	0.2	1.4	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
PALP	PF00291.25	gi|227828154|ref|YP_002829934.1|	-	5.4e-80	269.0	0.1	6.4e-80	268.7	0.1	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|227828154|ref|YP_002829934.1|	-	0.0018	18.0	0.5	0.0059	16.4	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|227828154|ref|YP_002829934.1|	-	0.01	16.4	0.3	0.064	13.8	0.1	2.2	2	0	0	2	2	2	0	ACT	domain
PDT	PF00800.18	gi|227828155|ref|YP_002829935.1|	-	7.3e-49	166.1	0.1	9.3e-49	165.7	0.1	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|227828155|ref|YP_002829935.1|	-	2.2e-08	33.7	0.0	6.6e-08	32.2	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
AsnC_trans_reg2	PF17805.1	gi|227828156|ref|YP_002829936.1|	-	5.4e-37	125.8	0.1	9.5e-18	64.1	0.0	2.5	2	0	0	2	2	2	2	AsnC-like	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|227828156|ref|YP_002829936.1|	-	6.2e-06	26.0	0.0	0.0038	17.0	0.0	2.5	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
ENT	PF03735.14	gi|227828156|ref|YP_002829936.1|	-	0.00098	19.2	0.9	0.38	10.9	0.1	2.7	2	0	0	2	2	2	2	ENT	domain
HTH_24	PF13412.6	gi|227828156|ref|YP_002829936.1|	-	0.0016	17.9	0.3	0.014	14.9	0.1	2.8	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
DUF4342	PF14242.6	gi|227828156|ref|YP_002829936.1|	-	0.036	14.1	6.4	0.037	14.0	0.5	3.0	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4342)
HTH_20	PF12840.7	gi|227828156|ref|YP_002829936.1|	-	0.042	13.9	0.0	0.25	11.4	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF2805	PF10985.8	gi|227828156|ref|YP_002829936.1|	-	0.072	13.5	0.6	6.1	7.3	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2805)
RelE	PF06296.12	gi|227828156|ref|YP_002829936.1|	-	0.099	12.8	0.0	1.1	9.3	0.0	2.4	2	0	0	2	2	2	0	RelE	toxin	of	RelE	/	RelB	toxin-antitoxin	system
Pyr_redox_2	PF07992.14	gi|227828157|ref|YP_002829937.1|	-	2.4e-13	50.0	0.2	1.5e-06	27.7	0.0	3.1	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|227828157|ref|YP_002829937.1|	-	1.1e-09	38.3	0.0	1e-05	25.3	0.0	2.7	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|227828157|ref|YP_002829937.1|	-	1.2e-09	37.7	0.1	4.6e-05	22.7	0.0	2.4	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|227828157|ref|YP_002829937.1|	-	6.9e-09	35.4	1.1	0.0008	18.7	0.0	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|227828157|ref|YP_002829937.1|	-	4.4e-08	32.2	0.0	0.00032	19.5	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|227828157|ref|YP_002829937.1|	-	7.3e-06	25.3	1.1	0.0011	18.1	0.1	2.8	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|227828157|ref|YP_002829937.1|	-	1.4e-05	25.3	0.1	0.00017	21.8	0.0	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.6	gi|227828157|ref|YP_002829937.1|	-	0.0006	19.8	0.0	0.0078	16.2	0.0	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|227828157|ref|YP_002829937.1|	-	0.00093	19.7	0.6	0.37	11.4	0.1	3.0	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|227828157|ref|YP_002829937.1|	-	0.0011	18.3	0.3	0.0035	16.6	0.1	2.0	3	0	0	3	3	3	1	Thi4	family
FAD_binding_3	PF01494.19	gi|227828157|ref|YP_002829937.1|	-	0.0011	18.2	0.0	0.0021	17.4	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|227828157|ref|YP_002829937.1|	-	0.0046	16.1	0.0	0.028	13.5	0.0	1.9	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.14	gi|227828157|ref|YP_002829937.1|	-	0.03	13.2	0.0	0.07	12.0	0.0	1.6	2	0	0	2	2	2	0	Tryptophan	halogenase
FAD_oxidored	PF12831.7	gi|227828157|ref|YP_002829937.1|	-	0.055	12.8	0.0	0.086	12.2	0.0	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Rib_hydrolayse	PF02267.17	gi|227828157|ref|YP_002829937.1|	-	0.099	12.0	0.0	0.15	11.4	0.0	1.2	1	0	0	1	1	1	0	ADP-ribosyl	cyclase
Adenylsucc_synt	PF00709.21	gi|227828158|ref|YP_002829938.1|	-	4.2e-67	226.9	0.3	1.3e-37	129.7	0.1	3.0	1	1	2	3	3	3	3	Adenylosuccinate	synthetase
DUF1297	PF06973.12	gi|227828159|ref|YP_002829939.1|	-	3.4e-79	264.8	0.0	4.4e-79	264.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|227828159|ref|YP_002829939.1|	-	2.2e-47	160.0	0.0	3.4e-47	159.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
DUF1297	PF06973.12	gi|227828160|ref|YP_002829940.1|	-	1.7e-76	256.0	0.4	2.3e-76	255.6	0.4	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|227828160|ref|YP_002829940.1|	-	9.5e-41	138.6	0.1	1.5e-40	138.0	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
GARS_A	PF01071.19	gi|227828160|ref|YP_002829940.1|	-	0.0057	16.4	0.3	0.017	14.9	0.1	1.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp	PF02222.22	gi|227828160|ref|YP_002829940.1|	-	0.036	13.6	0.5	1.5	8.3	0.1	2.2	2	0	0	2	2	2	0	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|227828160|ref|YP_002829940.1|	-	0.072	12.6	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
GSH-S_ATP	PF02955.16	gi|227828160|ref|YP_002829940.1|	-	0.085	12.2	0.1	0.14	11.5	0.1	1.4	1	0	0	1	1	1	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
Lyase_1	PF00206.20	gi|227828161|ref|YP_002829941.1|	-	2.9e-43	148.4	0.0	4.7e-43	147.8	0.0	1.2	1	0	0	1	1	1	1	Lyase
ADSL_C	PF10397.9	gi|227828161|ref|YP_002829941.1|	-	6.2e-17	61.9	0.0	1.9e-16	60.4	0.0	1.9	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminus
ASL_C	PF08328.11	gi|227828161|ref|YP_002829941.1|	-	1.4e-06	28.4	0.5	3.9e-06	26.9	0.5	1.8	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
FumaraseC_C	PF10415.9	gi|227828161|ref|YP_002829941.1|	-	0.0065	16.9	0.1	0.14	12.6	0.0	3.2	4	0	0	4	4	4	1	Fumarase	C	C-terminus
COX3	PF00510.18	gi|227828161|ref|YP_002829941.1|	-	0.066	13.0	0.0	0.099	12.5	0.0	1.2	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	III
AIRS	PF00586.24	gi|227828162|ref|YP_002829942.1|	-	8.7e-11	42.3	0.0	1.5e-10	41.6	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Radical_SAM	PF04055.21	gi|227828163|ref|YP_002829943.1|	-	2.3e-21	76.9	0.0	2.3e-21	76.9	0.0	2.1	3	0	0	3	3	3	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|227828163|ref|YP_002829943.1|	-	1.8e-07	31.3	0.0	1.8e-07	31.3	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|227828163|ref|YP_002829943.1|	-	2.2e-07	31.2	0.0	5.5e-07	29.9	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Peptidase_S13	PF02113.15	gi|227828163|ref|YP_002829943.1|	-	0.15	10.8	0.0	0.33	9.6	0.0	1.5	2	0	0	2	2	2	0	D-Ala-D-Ala	carboxypeptidase	3	(S13)	family
Pribosyltran	PF00156.27	gi|227828165|ref|YP_002829945.1|	-	1.6e-14	53.8	0.2	2.8e-14	52.9	0.2	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|227828165|ref|YP_002829945.1|	-	0.0076	15.8	0.0	0.009	15.5	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase
HTH_Tnp_4	PF13613.6	gi|227828165|ref|YP_002829945.1|	-	0.07	12.9	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
GatB_N	PF02934.15	gi|227828166|ref|YP_002829946.1|	-	6.5e-98	327.5	0.0	9e-98	327.0	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|227828166|ref|YP_002829946.1|	-	1.3e-41	142.0	7.1	2.3e-41	141.1	7.1	1.5	1	0	0	1	1	1	1	GatB	domain
SWIRM	PF04433.17	gi|227828166|ref|YP_002829946.1|	-	0.2	12.0	1.5	0.98	9.8	0.3	2.5	2	0	0	2	2	2	0	SWIRM	domain
UPRTase	PF14681.6	gi|227828167|ref|YP_002829947.1|	-	3.5e-49	167.1	0.0	4e-49	166.9	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|227828167|ref|YP_002829947.1|	-	2.6e-09	36.8	0.4	4.9e-09	35.9	0.3	1.5	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|227828167|ref|YP_002829947.1|	-	0.08	12.4	0.0	0.17	11.3	0.0	1.6	1	1	0	1	1	1	0	Phosphoribosyl	transferase
Ribosomal_S28e	PF01200.18	gi|227828168|ref|YP_002829948.1|	-	1.8e-31	107.9	3.1	2.4e-31	107.5	3.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L24e	PF01246.20	gi|227828169|ref|YP_002829949.1|	-	8.6e-22	77.1	2.5	9.2e-22	77.1	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|227828169|ref|YP_002829949.1|	-	5.1e-07	29.5	1.3	7.9e-07	28.9	1.3	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
YHS	PF04945.13	gi|227828169|ref|YP_002829949.1|	-	0.00031	20.8	0.1	0.00056	20.0	0.1	1.4	1	1	0	1	1	1	1	YHS	domain
zf-MYND	PF01753.18	gi|227828169|ref|YP_002829949.1|	-	0.00034	20.7	0.0	0.0005	20.1	0.0	1.3	1	1	0	1	1	1	1	MYND	finger
zf-FLZ	PF04570.14	gi|227828169|ref|YP_002829949.1|	-	0.0014	18.1	0.6	0.0025	17.3	0.6	1.4	1	1	0	1	1	1	1	zinc-finger	of	the	FCS-type,	C2-C2
DUF3268	PF11672.8	gi|227828169|ref|YP_002829949.1|	-	0.021	15.2	0.6	0.03	14.7	0.5	1.3	1	1	0	1	1	1	0	zinc-finger-containing	domain
DUF2116	PF09889.9	gi|227828169|ref|YP_002829949.1|	-	0.035	14.1	2.5	1.8	8.6	0.3	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
CpXC	PF14353.6	gi|227828169|ref|YP_002829949.1|	-	0.065	13.3	0.1	0.071	13.2	0.1	1.0	1	0	0	1	1	1	0	CpXC	protein
NosL	PF05573.12	gi|227828169|ref|YP_002829949.1|	-	0.13	12.7	0.1	0.13	12.7	0.1	1.1	1	0	0	1	1	1	0	NosL
VATC	PF18716.1	gi|227828169|ref|YP_002829949.1|	-	0.41	10.5	5.4	3.4	7.6	5.4	2.1	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
NDK	PF00334.19	gi|227828170|ref|YP_002829950.1|	-	3.1e-58	195.6	0.0	3.5e-58	195.4	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
GTP_EFTU_D4	PF14578.6	gi|227828171|ref|YP_002829951.1|	-	6e-38	128.6	3.0	6e-38	128.6	3.0	2.2	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
GTP_EFTU	PF00009.27	gi|227828171|ref|YP_002829951.1|	-	2.5e-30	105.5	0.0	1e-29	103.5	0.0	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.8	gi|227828171|ref|YP_002829951.1|	-	2.9e-14	53.1	1.9	2.9e-14	53.1	1.9	2.6	3	0	0	3	3	3	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|227828171|ref|YP_002829951.1|	-	1.5e-11	44.5	0.6	8.3e-11	42.1	0.0	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|227828171|ref|YP_002829951.1|	-	5e-07	29.8	1.0	3.1e-06	27.2	0.0	2.6	2	1	1	3	3	3	1	50S	ribosome-binding	GTPase
Roc	PF08477.13	gi|227828171|ref|YP_002829951.1|	-	6.2e-05	23.2	0.0	0.00013	22.2	0.0	1.5	1	0	0	1	1	1	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Ras	PF00071.22	gi|227828171|ref|YP_002829951.1|	-	0.0029	17.2	0.0	0.014	15.0	0.0	2.2	1	1	0	1	1	1	1	Ras	family
Arf	PF00025.21	gi|227828171|ref|YP_002829951.1|	-	0.0044	16.5	0.3	4	6.8	0.1	3.1	2	1	0	2	2	2	2	ADP-ribosylation	factor	family
Dynamin_N	PF00350.23	gi|227828171|ref|YP_002829951.1|	-	0.013	15.6	0.7	0.1	12.6	0.0	2.6	3	0	0	3	3	3	0	Dynamin	family
RsgA_GTPase	PF03193.16	gi|227828171|ref|YP_002829951.1|	-	0.023	14.6	0.7	3.2	7.6	0.0	3.5	2	1	2	4	4	4	0	RsgA	GTPase
Peripla_BP_4	PF13407.6	gi|227828171|ref|YP_002829951.1|	-	0.049	13.2	0.1	0.14	11.7	0.0	1.7	2	0	0	2	2	2	0	Periplasmic	binding	protein	domain
CRA	PF06589.11	gi|227828171|ref|YP_002829951.1|	-	0.12	12.4	0.9	2.2	8.4	0.0	2.5	2	0	0	2	2	2	0	Circumsporozoite-related	antigen	(CRA)
Ribo_biogen_C	PF04034.13	gi|227828171|ref|YP_002829951.1|	-	0.16	11.7	0.0	0.39	10.4	0.0	1.6	1	0	0	1	1	1	0	Ribosome	biogenesis	protein,	C-terminal
SRPRB	PF09439.10	gi|227828171|ref|YP_002829951.1|	-	0.32	10.4	3.7	1.7	8.1	0.3	3.2	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
RNA_pol_Rpb5_C	PF01191.19	gi|227828172|ref|YP_002829952.1|	-	3.2e-28	97.4	0.2	3.5e-28	97.3	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
Peptidase_C13	PF01650.18	gi|227828172|ref|YP_002829952.1|	-	0.23	11.0	0.0	0.26	10.8	0.0	1.0	1	0	0	1	1	1	0	Peptidase	C13	family
RNA_pol_Rpb2_6	PF00562.28	gi|227828173|ref|YP_002829953.1|	-	1.7e-127	425.7	0.1	2.5e-127	425.2	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.15	gi|227828173|ref|YP_002829953.1|	-	7.3e-56	188.9	0.0	1.1e-55	188.3	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|227828173|ref|YP_002829953.1|	-	2.9e-41	141.2	0.0	4.8e-41	140.5	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_7	PF04560.20	gi|227828173|ref|YP_002829953.1|	-	3.2e-30	104.4	0.0	5.9e-30	103.5	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_3	PF04565.16	gi|227828173|ref|YP_002829953.1|	-	2.3e-25	88.6	0.0	5.6e-25	87.3	0.0	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_4	PF04566.13	gi|227828173|ref|YP_002829953.1|	-	1e-19	70.6	2.8	2.7e-19	69.2	2.8	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|227828173|ref|YP_002829953.1|	-	7.8e-11	42.4	0.0	2.3e-10	40.9	0.0	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
RNA_pol_Rpb2_45	PF10385.9	gi|227828173|ref|YP_002829953.1|	-	0.085	13.1	0.1	0.75	10.1	0.1	2.5	2	0	0	2	2	2	0	RNA	polymerase	beta	subunit	external	1	domain
RNA_pol_Rpb1_1	PF04997.12	gi|227828174|ref|YP_002829954.1|	-	9.6e-102	340.5	0.0	1.4e-101	340.0	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|227828174|ref|YP_002829954.1|	-	1.7e-74	249.6	0.0	3.3e-74	248.6	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.18	gi|227828174|ref|YP_002829954.1|	-	3.2e-38	131.1	0.0	5.3e-38	130.4	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_4	PF05000.17	gi|227828174|ref|YP_002829954.1|	-	3.4e-33	113.8	0.0	7.2e-33	112.8	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_5	PF04998.17	gi|227828174|ref|YP_002829954.1|	-	4.4e-24	85.3	0.1	9e-24	84.3	0.1	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
DZR	PF12773.7	gi|227828174|ref|YP_002829954.1|	-	0.042	13.9	1.4	3.8	7.6	0.2	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.14	gi|227828174|ref|YP_002829954.1|	-	0.067	13.1	7.6	0.85	9.5	0.3	3.5	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Zn-ribbon_8	PF09723.10	gi|227828174|ref|YP_002829954.1|	-	0.21	11.7	3.4	16	5.7	0.1	3.3	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|227828174|ref|YP_002829954.1|	-	0.24	10.9	8.3	0.9	9.0	0.3	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-IS66	PF13005.7	gi|227828174|ref|YP_002829954.1|	-	1	9.8	6.3	5.5	7.5	2.3	2.9	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ISL3	PF14690.6	gi|227828174|ref|YP_002829954.1|	-	1.4	9.7	7.5	9.5	7.0	0.2	3.5	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
HypA	PF01155.19	gi|227828174|ref|YP_002829954.1|	-	1.5	8.8	3.3	15	5.7	3.2	2.5	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF35_N	PF12172.8	gi|227828174|ref|YP_002829954.1|	-	2.2	8.3	8.5	30	4.6	0.1	3.5	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1595	PF12760.7	gi|227828174|ref|YP_002829954.1|	-	2.2	8.3	8.0	1.5	8.8	0.0	3.1	3	0	0	3	3	3	0	Transposase	zinc-ribbon	domain
RNA_pol_Rpb1_5	PF04998.17	gi|227828175|ref|YP_002829955.1|	-	1.3e-58	198.6	4.0	1.9e-58	198.0	4.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
Baculo_FP	PF03258.14	gi|227828175|ref|YP_002829955.1|	-	0.0055	16.9	1.5	0.056	13.6	0.0	2.6	2	0	0	2	2	2	1	Baculovirus	FP	protein
DUF16	PF01519.16	gi|227828175|ref|YP_002829955.1|	-	0.079	13.5	0.2	0.28	11.7	0.2	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
Ribosomal_L7Ae	PF01248.26	gi|227828176|ref|YP_002829956.1|	-	1e-16	60.4	0.0	1.3e-16	60.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
Ribosom_S12_S23	PF00164.25	gi|227828177|ref|YP_002829957.1|	-	2.5e-47	159.2	0.3	3.6e-47	158.7	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
DNase-RNase	PF02577.14	gi|227828178|ref|YP_002829958.1|	-	6.4e-07	29.1	0.1	8.5e-07	28.7	0.1	1.2	1	0	0	1	1	1	1	Bifunctional	nuclease
Ribosomal_S7	PF00177.21	gi|227828179|ref|YP_002829959.1|	-	4.1e-44	149.8	0.3	5.1e-44	149.5	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
GTP_EFTU	PF00009.27	gi|227828180|ref|YP_002829960.1|	-	2.1e-54	184.1	0.0	2.5e-54	183.8	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|227828180|ref|YP_002829960.1|	-	1e-38	132.1	0.0	2.8e-38	130.7	0.0	1.8	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|227828180|ref|YP_002829960.1|	-	5e-19	68.5	5.2	3.6e-18	65.7	2.9	2.7	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|227828180|ref|YP_002829960.1|	-	1.4e-05	25.2	0.1	6.4e-05	23.0	0.1	2.1	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU_D4	PF14578.6	gi|227828180|ref|YP_002829960.1|	-	2.7e-05	24.0	3.7	5.3e-05	23.1	2.6	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
SRPRB	PF09439.10	gi|227828180|ref|YP_002829960.1|	-	0.0034	16.8	0.1	1.5	8.2	0.0	2.3	1	1	1	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
Septin	PF00735.18	gi|227828180|ref|YP_002829960.1|	-	0.013	14.8	0.1	0.058	12.7	0.1	2.0	1	1	0	1	1	1	0	Septin
Dynamin_N	PF00350.23	gi|227828180|ref|YP_002829960.1|	-	0.049	13.7	0.0	7	6.7	0.0	2.4	1	1	1	2	2	2	0	Dynamin	family
HSR	PF03172.13	gi|227828180|ref|YP_002829960.1|	-	0.054	13.7	0.0	0.1	12.8	0.0	1.4	1	0	0	1	1	1	0	HSR	domain
Ribosomal_S10	PF00338.22	gi|227828181|ref|YP_002829961.1|	-	1.2e-25	89.6	0.0	1.3e-25	89.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
DUF1464	PF07318.12	gi|227828183|ref|YP_002829963.1|	-	1.1e-99	333.8	0.2	2.8e-99	332.4	0.2	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1464)
RuvC	PF02075.17	gi|227828183|ref|YP_002829963.1|	-	0.12	12.3	0.0	0.47	10.3	0.0	1.9	2	0	0	2	2	2	0	Crossover	junction	endodeoxyribonuclease	RuvC
NTP_transf_2	PF01909.23	gi|227828184|ref|YP_002829964.1|	-	7.6e-06	26.1	0.1	1.4e-05	25.3	0.1	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227828184|ref|YP_002829964.1|	-	0.00016	21.7	0.4	0.00044	20.3	0.4	1.8	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
THB	PF18362.1	gi|227828184|ref|YP_002829964.1|	-	0.28	10.8	1.3	2	8.1	0.1	2.9	3	0	0	3	3	3	0	Tri-helix	bundle	domain
CitG	PF01874.16	gi|227828185|ref|YP_002829965.1|	-	8.8e-39	133.8	0.0	1e-38	133.6	0.0	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
Phage_Orf51	PF06194.11	gi|227828185|ref|YP_002829965.1|	-	0.029	14.4	0.0	0.059	13.4	0.0	1.5	1	0	0	1	1	1	0	Phage	Conserved	Open	Reading	Frame	51
Metallophos_3	PF14582.6	gi|227828186|ref|YP_002829966.1|	-	2.1e-10	40.4	0.1	5.6e-09	35.7	0.1	2.0	1	1	1	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
Acetyltransf_1	PF00583.25	gi|227828187|ref|YP_002829967.1|	-	4.3e-19	68.9	0.1	5.4e-19	68.6	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|227828187|ref|YP_002829967.1|	-	1.4e-13	51.0	0.0	2.2e-13	50.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|227828187|ref|YP_002829967.1|	-	1.3e-12	47.7	0.1	2.6e-12	46.8	0.1	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|227828187|ref|YP_002829967.1|	-	4.2e-08	33.0	0.1	7.3e-08	32.3	0.1	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.6	gi|227828187|ref|YP_002829967.1|	-	1.6e-06	27.8	0.0	3e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|227828187|ref|YP_002829967.1|	-	1.9e-06	28.0	0.1	7e-06	26.1	0.1	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|227828187|ref|YP_002829967.1|	-	5.5e-06	26.0	0.4	9.8e-06	25.2	0.3	1.5	1	1	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_4	PF13420.7	gi|227828187|ref|YP_002829967.1|	-	5.4e-05	23.4	1.5	0.00023	21.3	1.5	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|227828187|ref|YP_002829967.1|	-	0.0001	23.0	0.0	0.00017	22.3	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|227828187|ref|YP_002829967.1|	-	0.0036	17.2	0.0	0.0083	16.1	0.0	1.6	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
GNAT_acetyltran	PF12746.7	gi|227828187|ref|YP_002829967.1|	-	0.0057	16.2	0.0	0.0087	15.7	0.0	1.3	1	0	0	1	1	1	1	GNAT	acetyltransferase
Acetyltransf_CG	PF14542.6	gi|227828187|ref|YP_002829967.1|	-	0.056	13.6	0.0	0.096	12.8	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
DFP	PF04127.15	gi|227828188|ref|YP_002829968.1|	-	8.3e-57	192.0	0.0	1.3e-54	184.9	0.0	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|227828188|ref|YP_002829968.1|	-	6.1e-38	130.1	1.9	1.3e-37	129.0	0.4	2.0	2	0	0	2	2	2	1	Flavoprotein
PGM_PMM_I	PF02878.16	gi|227828189|ref|YP_002829969.1|	-	1.3e-45	154.4	0.0	3.6e-45	153.1	0.0	1.7	1	1	1	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|227828189|ref|YP_002829969.1|	-	1.1e-22	80.6	0.0	2.4e-22	79.5	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|227828189|ref|YP_002829969.1|	-	1.1e-16	61.1	0.0	2.4e-16	60.0	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|227828189|ref|YP_002829969.1|	-	3e-09	36.9	0.0	9e-09	35.4	0.0	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Propep_M14	PF02244.16	gi|227828189|ref|YP_002829969.1|	-	0.024	15.0	0.0	0.71	10.3	0.0	2.4	2	0	0	2	2	2	0	Carboxypeptidase	activation	peptide
Trm112p	PF03966.16	gi|227828190|ref|YP_002829970.1|	-	1.7e-18	66.9	2.6	2.3e-18	66.5	2.6	1.2	1	0	0	1	1	1	1	Trm112p-like	protein
Pico_P2A	PF00947.19	gi|227828190|ref|YP_002829970.1|	-	0.086	12.9	0.1	0.1	12.6	0.1	1.3	1	0	0	1	1	1	0	Picornavirus	core	protein	2A
zf-RING_7	PF02591.15	gi|227828190|ref|YP_002829970.1|	-	0.66	10.2	7.2	4.7	7.5	3.5	2.9	2	1	0	2	2	2	0	C4-type	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|227828190|ref|YP_002829970.1|	-	3.5	7.7	11.4	4.7	7.2	0.2	3.4	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
DUF2153	PF09921.9	gi|227828191|ref|YP_002829971.1|	-	1.7e-55	186.1	9.4	2e-55	185.8	9.4	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2153)
DUF4248	PF14053.6	gi|227828191|ref|YP_002829971.1|	-	0.042	13.9	1.2	1.1	9.4	0.1	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4248)
Arc_PepC_II	PF06847.11	gi|227828191|ref|YP_002829971.1|	-	0.045	14.3	0.6	0.19	12.2	0.1	1.9	1	1	1	2	2	2	0	Archaeal	Peptidase	A24	C-terminus	Type	II
RE_HindIII	PF09518.10	gi|227828191|ref|YP_002829971.1|	-	0.062	12.5	1.1	0.075	12.3	1.1	1.1	1	0	0	1	1	1	0	HindIII	restriction	endonuclease
VPR	PF00522.18	gi|227828191|ref|YP_002829971.1|	-	0.12	12.4	0.5	0.3	11.1	0.3	1.9	1	1	0	1	1	1	0	VPR/VPX	protein
DUF1912	PF08930.10	gi|227828191|ref|YP_002829971.1|	-	0.18	12.0	1.2	12	6.1	0.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1912)
DUF1411	PF07199.11	gi|227828192|ref|YP_002829972.1|	-	2.7e-05	23.9	1.8	3.1e-05	23.7	1.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1411)
OMPdecase	PF00215.24	gi|227828193|ref|YP_002829973.1|	-	1.1e-18	67.6	2.1	1.5e-18	67.2	2.1	1.2	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
NanE	PF04131.14	gi|227828193|ref|YP_002829973.1|	-	0.00019	20.7	0.5	0.00036	19.8	0.4	1.6	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
QRPTase_C	PF01729.19	gi|227828193|ref|YP_002829973.1|	-	0.0019	18.0	1.8	0.0029	17.4	0.5	1.9	1	1	1	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
PEP_hydrolase	PF09370.10	gi|227828193|ref|YP_002829973.1|	-	0.011	14.9	0.0	0.017	14.3	0.0	1.4	1	0	0	1	1	1	0	Phosphoenolpyruvate	hydrolase-like
4HFCP_synth	PF04476.13	gi|227828193|ref|YP_002829973.1|	-	0.016	14.9	0.1	0.2	11.4	0.0	2.4	1	1	1	2	2	2	0	4-HFC-P	synthase
HMGL-like	PF00682.19	gi|227828193|ref|YP_002829973.1|	-	0.059	12.9	0.6	0.83	9.2	0.2	1.9	1	1	1	2	2	2	0	HMGL-like
CTP_synth_N	PF06418.14	gi|227828194|ref|YP_002829974.1|	-	2e-120	401.0	4.7	3e-120	400.5	4.7	1.3	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|227828194|ref|YP_002829974.1|	-	3.1e-53	180.4	0.0	5.3e-53	179.6	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|227828194|ref|YP_002829974.1|	-	1.3e-09	38.1	0.0	7.1e-09	35.7	0.0	2.1	2	0	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.23	gi|227828194|ref|YP_002829974.1|	-	7.5e-06	26.0	0.0	1.4e-05	25.2	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MeaB	PF03308.16	gi|227828194|ref|YP_002829974.1|	-	0.0031	16.5	0.1	0.0054	15.8	0.1	1.3	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF5603	PF18231.1	gi|227828194|ref|YP_002829974.1|	-	0.0097	16.2	0.1	0.076	13.3	0.0	2.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5603)
HTH_5	PF01022.20	gi|227828195|ref|YP_002829975.1|	-	2.9e-13	49.5	0.9	7.1e-12	45.0	0.6	2.1	1	1	1	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|227828195|ref|YP_002829975.1|	-	5.5e-10	39.2	0.0	7.4e-10	38.7	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|227828195|ref|YP_002829975.1|	-	1.8e-06	27.4	0.8	2.5e-06	26.9	0.1	1.6	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|227828195|ref|YP_002829975.1|	-	5.4e-06	26.2	0.0	7.1e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|227828195|ref|YP_002829975.1|	-	5.7e-06	26.1	0.3	5.8e-05	22.9	0.1	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|227828195|ref|YP_002829975.1|	-	5.8e-06	26.1	0.3	1.1e-05	25.3	0.3	1.5	1	1	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|227828195|ref|YP_002829975.1|	-	2.6e-05	24.3	0.2	4.2e-05	23.6	0.1	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|227828195|ref|YP_002829975.1|	-	0.00018	21.3	0.2	0.00036	20.4	0.2	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.6	gi|227828195|ref|YP_002829975.1|	-	0.00019	21.8	0.1	0.00052	20.4	0.0	1.8	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|227828195|ref|YP_002829975.1|	-	0.00079	19.2	0.0	0.0014	18.3	0.0	1.4	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|227828195|ref|YP_002829975.1|	-	0.00091	19.2	0.2	0.0017	18.3	0.1	1.5	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
HTH_36	PF13730.6	gi|227828195|ref|YP_002829975.1|	-	0.0032	17.4	0.1	0.0058	16.6	0.1	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
UPF0122	PF04297.14	gi|227828195|ref|YP_002829975.1|	-	0.0034	17.6	0.2	0.0043	17.3	0.2	1.2	1	1	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
DprA_WH	PF17782.1	gi|227828195|ref|YP_002829975.1|	-	0.0039	17.3	0.0	0.0053	16.8	0.0	1.1	1	0	0	1	1	1	1	DprA	winged	helix	domain
Sigma70_r4	PF04545.16	gi|227828195|ref|YP_002829975.1|	-	0.008	15.7	0.0	0.015	14.8	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
DUF4423	PF14394.6	gi|227828195|ref|YP_002829975.1|	-	0.012	15.3	0.4	0.026	14.2	0.4	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Fe_dep_repress	PF01325.19	gi|227828195|ref|YP_002829975.1|	-	0.017	15.3	0.3	0.038	14.2	0.3	1.7	1	1	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF2250	PF10007.9	gi|227828195|ref|YP_002829975.1|	-	0.018	15.2	0.3	0.026	14.6	0.3	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Rrf2	PF02082.20	gi|227828195|ref|YP_002829975.1|	-	0.021	15.1	0.1	0.03	14.7	0.1	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_41	PF14502.6	gi|227828195|ref|YP_002829975.1|	-	0.03	14.0	0.1	0.069	12.9	0.1	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|227828195|ref|YP_002829975.1|	-	0.033	14.2	0.1	0.08	12.9	0.1	1.7	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|227828195|ref|YP_002829975.1|	-	0.041	13.5	0.0	0.073	12.7	0.0	1.5	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_45	PF14947.6	gi|227828195|ref|YP_002829975.1|	-	0.057	13.4	1.2	0.082	12.9	1.2	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
Dimerisation2	PF16864.5	gi|227828195|ref|YP_002829975.1|	-	0.065	13.2	0.0	0.085	12.8	0.0	1.1	1	0	0	1	1	1	0	Dimerisation	domain
HTH_40	PF14493.6	gi|227828195|ref|YP_002829975.1|	-	0.094	13.2	0.5	0.18	12.3	0.3	1.7	1	1	1	2	2	2	0	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|227828195|ref|YP_002829975.1|	-	0.095	12.5	0.0	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF4315	PF14193.6	gi|227828195|ref|YP_002829975.1|	-	0.18	11.8	1.1	0.49	10.4	1.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4315)
HTH_1	PF00126.27	gi|227828195|ref|YP_002829975.1|	-	0.22	11.5	0.0	0.33	11.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
LSM	PF01423.22	gi|227828196|ref|YP_002829976.1|	-	4.9e-21	74.2	0.2	5.8e-21	74.0	0.2	1.1	1	0	0	1	1	1	1	LSM	domain
DUF1125	PF06563.11	gi|227828196|ref|YP_002829976.1|	-	0.087	12.7	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1125)
AdoMet_Synthase	PF01941.19	gi|227828197|ref|YP_002829977.1|	-	4.4e-171	569.0	3.4	4.9e-171	568.9	3.4	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
DUF460	PF04312.13	gi|227828198|ref|YP_002829978.1|	-	2e-50	170.2	1.3	5.6e-50	168.7	1.3	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
Cep57_CLD_2	PF14197.6	gi|227828198|ref|YP_002829978.1|	-	0.31	11.2	18.8	0.082	13.0	3.0	3.9	2	1	1	3	3	3	0	Centrosome	localisation	domain	of	PPC89
Zein-binding	PF04576.15	gi|227828198|ref|YP_002829978.1|	-	0.32	11.3	6.9	7	7.0	0.3	3.0	1	1	0	2	2	2	0	Zein-binding
DUF2229	PF09989.9	gi|227828198|ref|YP_002829978.1|	-	0.4	10.3	3.5	0.38	10.4	0.2	2.4	1	1	1	2	2	2	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
SlyX	PF04102.12	gi|227828198|ref|YP_002829978.1|	-	1.2	9.7	4.8	0.83	10.3	0.2	2.9	3	0	0	3	3	3	0	SlyX
DUF3450	PF11932.8	gi|227828198|ref|YP_002829978.1|	-	1.3	8.2	13.6	0.29	10.4	7.0	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3450)
YabA	PF06156.13	gi|227828198|ref|YP_002829978.1|	-	4.3	8.0	18.9	18	6.0	2.1	4.0	2	1	1	3	3	3	0	Initiation	control	protein	YabA
RIO1	PF01163.22	gi|227828199|ref|YP_002829979.1|	-	1.1e-43	149.1	0.1	1.5e-43	148.6	0.1	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|227828199|ref|YP_002829979.1|	-	6.1e-07	29.6	0.0	0.00024	21.1	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|227828199|ref|YP_002829979.1|	-	1.2e-05	24.8	0.1	3.5e-05	23.3	0.1	1.7	1	1	0	1	1	1	1	Protein	kinase	domain
Rio2_N	PF09202.11	gi|227828199|ref|YP_002829979.1|	-	4.6e-05	23.5	0.4	0.00027	21.1	0.1	2.2	1	1	1	2	2	2	1	Rio2,	N-terminal
Kdo	PF06293.14	gi|227828199|ref|YP_002829979.1|	-	0.0002	20.8	0.0	0.22	10.9	0.0	2.1	2	0	0	2	2	2	2	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Choline_kinase	PF01633.20	gi|227828199|ref|YP_002829979.1|	-	0.0037	16.9	0.1	0.84	9.2	0.0	2.3	1	1	1	2	2	2	2	Choline/ethanolamine	kinase
FbpA	PF05833.11	gi|227828200|ref|YP_002829980.1|	-	7.8e-31	107.3	22.5	1.8e-30	106.2	22.5	1.6	1	1	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|227828200|ref|YP_002829980.1|	-	2e-24	86.3	0.0	4.6e-24	85.2	0.0	1.6	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|227828200|ref|YP_002829980.1|	-	0.00013	22.1	0.0	0.00059	20.0	0.0	2.2	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
DUF349	PF03993.12	gi|227828200|ref|YP_002829980.1|	-	0.016	15.5	1.0	0.016	15.5	1.0	2.6	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF349)
Sec34	PF04136.15	gi|227828200|ref|YP_002829980.1|	-	0.23	11.3	7.5	4.7	7.1	0.4	2.5	2	0	0	2	2	2	0	Sec34-like	family
DUF448	PF04296.13	gi|227828200|ref|YP_002829980.1|	-	0.24	11.3	1.3	1.8	8.5	0.0	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF448)
Tweety	PF04906.13	gi|227828200|ref|YP_002829980.1|	-	1.3	7.6	4.4	0.75	8.4	1.5	1.8	1	1	1	2	2	2	0	Tweety
DUF2232	PF09991.9	gi|227828201|ref|YP_002829981.1|	-	0.0077	15.4	9.1	0.0089	15.2	9.1	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2232)
BaxI_1	PF12811.7	gi|227828201|ref|YP_002829981.1|	-	0.015	14.9	4.5	0.017	14.7	4.5	1.0	1	0	0	1	1	1	0	Bax	inhibitor	1	like
DUF543	PF04418.12	gi|227828201|ref|YP_002829981.1|	-	0.065	13.2	0.3	0.065	13.2	0.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF543)
Mut7-C	PF01927.16	gi|227828202|ref|YP_002829982.1|	-	1.1e-32	113.2	4.2	5.2e-30	104.5	4.2	2.2	1	1	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|227828202|ref|YP_002829982.1|	-	9.1e-07	28.5	0.0	1.6e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
NRDD	PF13597.6	gi|227828202|ref|YP_002829982.1|	-	0.00062	18.7	0.2	0.038	12.8	0.1	2.0	2	0	0	2	2	2	1	Anaerobic	ribonucleoside-triphosphate	reductase
OrfB_Zn_ribbon	PF07282.11	gi|227828202|ref|YP_002829982.1|	-	0.0059	16.5	2.0	0.0059	16.5	2.0	1.7	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
IBR	PF01485.21	gi|227828202|ref|YP_002829982.1|	-	0.0096	16.1	1.0	0.018	15.3	1.0	1.4	1	0	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
Zn_ribbon_SprT	PF17283.2	gi|227828202|ref|YP_002829982.1|	-	0.027	14.4	2.8	2.3	8.2	0.0	2.5	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|227828202|ref|YP_002829982.1|	-	0.038	14.0	0.6	0.071	13.1	0.6	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|227828202|ref|YP_002829982.1|	-	0.039	14.0	0.1	0.062	13.3	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rep_fac-A_C	PF08646.10	gi|227828202|ref|YP_002829982.1|	-	0.039	13.7	0.4	0.062	13.1	0.4	1.4	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
C1_1	PF00130.22	gi|227828202|ref|YP_002829982.1|	-	0.04	13.8	0.7	0.075	12.9	0.7	1.4	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
ADK_lid	PF05191.14	gi|227828202|ref|YP_002829982.1|	-	0.041	13.9	0.5	0.32	11.0	0.0	2.3	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zinc-ribbons_6	PF07191.12	gi|227828202|ref|YP_002829982.1|	-	0.061	13.3	1.4	0.11	12.5	1.4	1.3	1	0	0	1	1	1	0	zinc-ribbons
zf_UBZ	PF18439.1	gi|227828202|ref|YP_002829982.1|	-	0.068	12.8	1.6	2.8	7.6	0.2	2.4	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Auto_anti-p27	PF06677.12	gi|227828202|ref|YP_002829982.1|	-	0.075	13.2	1.1	0.14	12.3	1.1	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ACC	PF17848.1	gi|227828202|ref|YP_002829982.1|	-	0.075	13.1	6.7	27	4.9	6.3	3.9	3	1	1	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|227828202|ref|YP_002829982.1|	-	0.08	12.9	2.2	0.16	11.9	2.2	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Rpr2	PF04032.16	gi|227828202|ref|YP_002829982.1|	-	0.082	13.2	1.4	0.16	12.2	1.4	1.6	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-ribbon_3	PF13248.6	gi|227828202|ref|YP_002829982.1|	-	0.098	12.1	5.6	0.61	9.6	5.6	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|227828202|ref|YP_002829982.1|	-	0.11	12.5	3.5	3.4	7.6	0.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-UDP	PF14569.6	gi|227828202|ref|YP_002829982.1|	-	0.26	11.4	1.8	12	6.1	0.0	2.2	1	1	1	2	2	2	0	Zinc-binding	RING-finger
zf-C2H2_3	PF13878.6	gi|227828202|ref|YP_002829982.1|	-	0.49	10.3	2.3	10	6.0	0.1	2.4	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Zn-ribbon_8	PF09723.10	gi|227828202|ref|YP_002829982.1|	-	0.82	9.8	3.9	4.5	7.5	0.2	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|227828202|ref|YP_002829982.1|	-	0.88	9.6	4.9	4.1	7.4	4.9	2.0	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
zf-HIT	PF04438.16	gi|227828202|ref|YP_002829982.1|	-	2.7	8.0	5.8	4.4	7.3	0.8	2.3	2	0	0	2	2	2	0	HIT	zinc	finger
zf-RING_4	PF14570.6	gi|227828202|ref|YP_002829982.1|	-	2.7	7.8	7.3	59	3.6	7.4	2.3	1	1	1	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-H2C2_2	PF13465.6	gi|227828202|ref|YP_002829982.1|	-	3.6	8.2	6.6	1.2	9.7	1.2	2.2	1	1	1	2	2	2	0	Zinc-finger	double	domain
AMMECR1	PF01871.17	gi|227828203|ref|YP_002829983.1|	-	1.3e-47	161.5	0.0	1.5e-47	161.3	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
Thioredoxin_3	PF13192.6	gi|227828204|ref|YP_002829984.1|	-	1.6e-30	104.9	2.5	8.7e-15	54.5	1.4	2.4	2	0	0	2	2	2	2	Thioredoxin	domain
Thioredoxin	PF00085.20	gi|227828204|ref|YP_002829984.1|	-	2.5e-05	24.2	0.7	0.023	14.7	0.4	2.3	2	0	0	2	2	2	2	Thioredoxin
OST3_OST6	PF04756.13	gi|227828204|ref|YP_002829984.1|	-	0.0004	19.8	0.0	0.0044	16.4	0.0	1.9	1	1	1	2	2	2	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_2	PF13098.6	gi|227828204|ref|YP_002829984.1|	-	0.00086	19.7	5.8	0.45	11.0	0.7	3.9	2	2	0	2	2	2	1	Thioredoxin-like	domain
Thioredoxin_5	PF13743.6	gi|227828204|ref|YP_002829984.1|	-	0.0061	16.3	0.0	0.099	12.3	0.0	2.3	2	0	0	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|227828204|ref|YP_002829984.1|	-	0.017	15.3	5.6	6.2	7.1	3.0	3.5	2	2	0	2	2	2	0	Glutaredoxin
Thioredoxin_7	PF13899.6	gi|227828204|ref|YP_002829984.1|	-	0.026	14.7	0.5	0.18	12.0	0.1	2.3	2	0	0	2	2	2	0	Thioredoxin-like
TrbC_Ftype	PF09673.10	gi|227828204|ref|YP_002829984.1|	-	0.06	13.4	0.5	1	9.5	0.1	2.4	2	1	0	2	2	2	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
PDDEXK_1	PF12705.7	gi|227828204|ref|YP_002829984.1|	-	0.071	13.0	0.0	6.3	6.6	0.0	2.2	2	0	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
Thioredoxin_4	PF13462.6	gi|227828204|ref|YP_002829984.1|	-	0.081	13.1	6.4	4.4	7.4	0.1	3.5	2	2	2	4	4	4	0	Thioredoxin
HCV_core	PF01542.18	gi|227828204|ref|YP_002829984.1|	-	0.1	13.0	0.0	0.44	11.0	0.0	1.9	2	0	0	2	2	2	0	Hepatitis	C	virus	core	protein
Herpes_UL6	PF01763.16	gi|227828205|ref|YP_002829985.1|	-	0.0012	17.5	1.4	0.0016	17.1	1.4	1.2	1	0	0	1	1	1	1	Herpesvirus	UL6	like
RHH_1	PF01402.21	gi|227828205|ref|YP_002829985.1|	-	0.0028	17.5	0.1	0.011	15.7	0.1	2.0	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
XhlA	PF10779.9	gi|227828205|ref|YP_002829985.1|	-	0.011	15.9	2.8	0.011	15.9	2.8	2.2	2	0	0	2	2	2	0	Haemolysin	XhlA
Uds1	PF15456.6	gi|227828205|ref|YP_002829985.1|	-	0.025	14.8	1.1	0.025	14.8	1.1	2.1	1	1	1	2	2	2	0	Up-regulated	During	Septation
DUF4407	PF14362.6	gi|227828205|ref|YP_002829985.1|	-	0.031	13.6	0.2	0.04	13.3	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF1664	PF07889.12	gi|227828205|ref|YP_002829985.1|	-	0.053	13.6	2.6	0.12	12.4	2.6	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DASH_Spc19	PF08287.11	gi|227828205|ref|YP_002829985.1|	-	0.093	12.6	2.9	0.19	11.6	2.9	1.5	1	0	0	1	1	1	0	Spc19
Allexi_40kDa	PF05549.11	gi|227828205|ref|YP_002829985.1|	-	0.1	12.1	3.5	0.072	12.6	1.1	1.8	2	0	0	2	2	2	0	Allexivirus	40kDa	protein
Ax_dynein_light	PF10211.9	gi|227828205|ref|YP_002829985.1|	-	0.3	11.0	6.9	0.038	13.9	2.2	1.9	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
TMPIT	PF07851.13	gi|227828205|ref|YP_002829985.1|	-	0.69	9.1	7.3	1.2	8.3	7.3	1.5	1	1	0	1	1	1	0	TMPIT-like	protein
Fib_alpha	PF08702.10	gi|227828205|ref|YP_002829985.1|	-	1	9.6	9.1	0.16	12.1	3.9	2.2	2	1	1	3	3	3	0	Fibrinogen	alpha/beta	chain	family
SlyX	PF04102.12	gi|227828205|ref|YP_002829985.1|	-	1.4	9.6	3.9	0.71	10.5	0.5	2.3	2	1	0	2	2	1	0	SlyX
ZapB	PF06005.12	gi|227828205|ref|YP_002829985.1|	-	1.9	9.0	7.9	0.14	12.6	1.6	2.4	2	0	0	2	2	2	0	Cell	division	protein	ZapB
Tropomyosin_1	PF12718.7	gi|227828205|ref|YP_002829985.1|	-	2.1	8.5	10.3	0.081	13.1	3.7	2.0	2	0	0	2	2	2	0	Tropomyosin	like
BLOC1_2	PF10046.9	gi|227828205|ref|YP_002829985.1|	-	3	8.2	8.6	0.22	11.8	1.6	2.7	3	0	0	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FlxA	PF14282.6	gi|227828205|ref|YP_002829985.1|	-	3.4	7.7	10.3	0.48	10.4	5.2	2.0	2	0	0	2	2	2	0	FlxA-like	protein
YtxH	PF12732.7	gi|227828205|ref|YP_002829985.1|	-	4.9	7.7	5.5	8.4	7.0	2.2	2.7	2	1	0	2	2	2	0	YtxH-like	protein
DUF4710	PF15828.5	gi|227828205|ref|YP_002829985.1|	-	9.4	6.4	9.6	0.3	11.2	0.7	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4710)
dUTPase	PF00692.19	gi|227828206|ref|YP_002829986.1|	-	1.1e-22	80.2	0.0	1.4e-22	79.7	0.0	1.1	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|227828206|ref|YP_002829986.1|	-	3.7e-05	22.7	0.0	0.00044	19.2	0.0	2.3	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
DNA_ligase_A_M	PF01068.21	gi|227828207|ref|YP_002829987.1|	-	2e-63	213.7	0.5	3.2e-63	213.1	0.5	1.3	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|227828207|ref|YP_002829987.1|	-	2e-39	135.7	0.4	3.9e-39	134.7	0.4	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|227828207|ref|YP_002829987.1|	-	3.1e-26	91.8	0.0	5.8e-26	91.0	0.0	1.5	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
RNA_ligase	PF09414.10	gi|227828207|ref|YP_002829987.1|	-	1e-05	25.9	0.7	2.1e-05	24.9	0.7	1.4	1	0	0	1	1	1	1	RNA	ligase
DNA_ligase_OB_2	PF14743.6	gi|227828207|ref|YP_002829987.1|	-	0.037	14.0	0.2	1.8	8.6	0.0	2.6	3	0	0	3	3	3	0	DNA	ligase	OB-like	domain
RMMBL	PF07521.12	gi|227828208|ref|YP_002829988.1|	-	0.0001	22.2	0.0	0.00019	21.3	0.0	1.5	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_2	PF12706.7	gi|227828208|ref|YP_002829988.1|	-	0.016	14.7	0.1	0.032	13.7	0.1	1.5	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DRMBL	PF07522.14	gi|227828208|ref|YP_002829988.1|	-	0.024	14.8	0.3	0.046	13.9	0.3	1.4	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
Lactamase_B	PF00753.27	gi|227828208|ref|YP_002829988.1|	-	0.071	13.1	0.2	0.15	12.0	0.2	1.5	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily
DAO	PF01266.24	gi|227828209|ref|YP_002829989.1|	-	5.7e-42	144.6	0.0	6.4e-42	144.4	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|227828209|ref|YP_002829989.1|	-	6.9e-05	22.9	0.0	0.012	15.6	0.0	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|227828209|ref|YP_002829989.1|	-	7.7e-05	21.9	0.0	0.0019	17.3	0.0	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|227828209|ref|YP_002829989.1|	-	0.0011	19.2	0.0	0.0021	18.3	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|227828209|ref|YP_002829989.1|	-	0.004	16.4	0.0	1.4	8.1	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|227828209|ref|YP_002829989.1|	-	0.02	14.1	0.0	0.038	13.2	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
Trp_halogenase	PF04820.14	gi|227828209|ref|YP_002829989.1|	-	0.021	13.7	0.0	0.66	8.7	0.0	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|227828209|ref|YP_002829989.1|	-	0.034	13.4	0.0	0.21	10.8	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|227828209|ref|YP_002829989.1|	-	0.098	11.3	0.0	1.9	7.1	0.0	2.1	2	0	0	2	2	2	0	HI0933-like	protein
ApbA	PF02558.16	gi|227828209|ref|YP_002829989.1|	-	0.21	11.2	0.0	0.32	10.6	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Fer2_BFD	PF04324.15	gi|227828210|ref|YP_002829990.1|	-	2.6e-08	34.1	0.4	5.2e-08	33.1	0.4	1.5	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
SO_alpha_A3	PF17806.1	gi|227828210|ref|YP_002829990.1|	-	3.1e-06	27.4	0.0	5.7e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	Sarcosine	oxidase	A3	domain
Pyr_redox_2	PF07992.14	gi|227828210|ref|YP_002829990.1|	-	0.0023	17.2	0.0	0.98	8.6	0.0	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227828210|ref|YP_002829990.1|	-	0.0031	16.8	0.3	0.31	10.2	0.3	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Phosphodiest	PF01663.22	gi|227828211|ref|YP_002829991.1|	-	3.9e-33	115.5	0.4	6.2e-32	111.6	0.4	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.12	gi|227828211|ref|YP_002829991.1|	-	0.0073	16.4	0.0	0.28	11.2	0.0	2.5	2	0	0	2	2	2	1	PglZ	domain
Sulfatase	PF00884.23	gi|227828211|ref|YP_002829991.1|	-	0.018	14.5	0.0	0.13	11.6	0.0	2.2	2	0	0	2	2	2	0	Sulfatase
RRM_2	PF04059.12	gi|227828212|ref|YP_002829992.1|	-	0.041	14.1	0.2	0.061	13.6	0.2	1.5	1	1	0	1	1	1	0	RNA	recognition	motif	2
HEM4	PF02602.15	gi|227828213|ref|YP_002829993.1|	-	8.9e-25	87.4	0.0	1.3e-24	86.9	0.0	1.3	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
Porphobil_deam	PF01379.20	gi|227828214|ref|YP_002829994.1|	-	2.8e-59	200.0	0.0	3.5e-59	199.8	0.0	1.1	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|227828214|ref|YP_002829994.1|	-	1e-07	32.2	0.0	2.4e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
PKcGMP_CC	PF16808.5	gi|227828214|ref|YP_002829994.1|	-	0.16	11.8	2.3	0.66	9.9	2.3	2.1	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Aminotran_3	PF00202.21	gi|227828215|ref|YP_002829995.1|	-	2.2e-65	220.9	0.0	2.6e-65	220.7	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
ALAD	PF00490.21	gi|227828216|ref|YP_002829996.1|	-	6.8e-141	469.0	0.3	7.6e-141	468.8	0.3	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
PP_kinase_C_1	PF17941.1	gi|227828216|ref|YP_002829996.1|	-	0.055	13.0	0.1	11	5.6	0.0	3.2	2	1	1	3	3	3	0	Polyphosphate	kinase	C-terminal	domain	1
GlutR_N	PF05201.15	gi|227828217|ref|YP_002829997.1|	-	1.1e-34	119.2	0.2	2.6e-34	118.1	0.0	1.7	2	0	0	2	2	2	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|227828217|ref|YP_002829997.1|	-	2.4e-23	82.7	0.0	6.5e-23	81.3	0.0	1.8	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|227828217|ref|YP_002829997.1|	-	5e-12	46.1	0.1	5e-11	42.9	0.1	2.4	1	1	1	2	2	2	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.17	gi|227828217|ref|YP_002829997.1|	-	4.1e-07	30.5	0.0	1e-06	29.2	0.0	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|227828217|ref|YP_002829997.1|	-	0.00015	22.0	0.0	0.0003	21.1	0.0	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_2	PF03446.15	gi|227828217|ref|YP_002829997.1|	-	0.00021	21.5	0.3	0.00087	19.5	0.1	2.0	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|227828217|ref|YP_002829997.1|	-	0.00066	19.1	0.1	0.0012	18.3	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|227828217|ref|YP_002829997.1|	-	0.00086	19.6	0.4	0.0021	18.3	0.1	1.8	2	0	0	2	2	1	1	TrkA-N	domain
3HCDH_N	PF02737.18	gi|227828217|ref|YP_002829997.1|	-	0.00098	19.1	1.5	0.003	17.4	0.0	2.4	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|227828217|ref|YP_002829997.1|	-	0.0023	18.4	0.0	0.006	17.0	0.0	1.7	1	0	0	1	1	1	1	Putative	NAD(P)-binding
ThiF	PF00899.21	gi|227828217|ref|YP_002829997.1|	-	0.003	17.0	0.0	0.0067	15.8	0.0	1.5	1	0	0	1	1	1	1	ThiF	family
ApbA	PF02558.16	gi|227828217|ref|YP_002829997.1|	-	0.0044	16.7	0.0	0.0081	15.8	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.22	gi|227828217|ref|YP_002829997.1|	-	0.0061	17.4	0.0	0.021	15.6	0.0	1.9	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DapB_N	PF01113.20	gi|227828217|ref|YP_002829997.1|	-	0.0062	16.6	0.0	0.015	15.4	0.0	1.7	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
IlvN	PF07991.12	gi|227828217|ref|YP_002829997.1|	-	0.013	15.0	0.0	0.035	13.7	0.0	1.7	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
DUF2115	PF09888.9	gi|227828217|ref|YP_002829997.1|	-	0.02	15.4	1.6	0.02	15.4	1.6	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2115)
FAD_binding_3	PF01494.19	gi|227828217|ref|YP_002829997.1|	-	0.041	13.1	0.0	0.063	12.5	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
PglD_N	PF17836.1	gi|227828217|ref|YP_002829997.1|	-	0.044	14.4	0.1	0.15	12.7	0.1	2.0	1	0	0	1	1	1	0	PglD	N-terminal	domain
ELFV_dehydrog	PF00208.21	gi|227828217|ref|YP_002829997.1|	-	0.046	13.4	0.6	0.14	11.8	0.1	2.1	2	1	0	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|227828217|ref|YP_002829997.1|	-	0.073	13.0	0.1	0.24	11.3	0.1	1.9	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
KR	PF08659.10	gi|227828217|ref|YP_002829997.1|	-	0.11	12.4	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	KR	domain
Pyr_redox_2	PF07992.14	gi|227828217|ref|YP_002829997.1|	-	0.11	11.7	0.0	0.18	11.0	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Mnd1	PF03962.15	gi|227828217|ref|YP_002829997.1|	-	0.26	11.6	2.3	2	8.8	0.1	3.4	2	1	0	2	2	2	0	Mnd1	HTH	domain
MA3	PF02847.17	gi|227828217|ref|YP_002829997.1|	-	0.52	10.3	3.9	5.2	7.1	3.6	2.8	1	1	0	1	1	1	0	MA3	domain
Pro_sub2	PF18513.1	gi|227828217|ref|YP_002829997.1|	-	0.63	10.2	4.9	7.8	6.8	0.7	3.1	1	1	1	2	2	2	0	Prodomain	subtilisin	2
NAD_binding_7	PF13241.6	gi|227828218|ref|YP_002829998.1|	-	1.1e-24	86.8	0.0	2.1e-24	86.0	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|227828218|ref|YP_002829998.1|	-	6.7e-05	23.1	0.6	0.00019	21.7	0.2	1.9	1	1	1	2	2	2	1	TrkA-N	domain
AdoHcyase_NAD	PF00670.21	gi|227828218|ref|YP_002829998.1|	-	0.00081	19.5	0.3	0.045	13.8	0.1	2.3	2	1	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|227828218|ref|YP_002829998.1|	-	0.0013	19.3	0.1	0.0053	17.3	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|227828218|ref|YP_002829998.1|	-	0.0054	16.0	0.0	0.011	15.0	0.0	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Shikimate_DH	PF01488.20	gi|227828218|ref|YP_002829998.1|	-	0.014	15.5	0.5	0.039	14.0	0.1	1.9	2	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox_2	PF07992.14	gi|227828218|ref|YP_002829998.1|	-	0.018	14.3	0.1	0.037	13.3	0.1	1.3	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227828218|ref|YP_002829998.1|	-	0.032	13.3	0.0	0.055	12.5	0.0	1.5	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
2-Hacid_dh_C	PF02826.19	gi|227828218|ref|YP_002829998.1|	-	0.057	12.8	0.0	0.083	12.3	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|227828218|ref|YP_002829998.1|	-	0.059	12.6	0.0	0.094	11.9	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|227828218|ref|YP_002829998.1|	-	0.06	13.2	0.0	0.098	12.5	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Spermine_synth	PF01564.17	gi|227828218|ref|YP_002829998.1|	-	0.095	12.1	0.3	1.1	8.6	0.1	2.1	1	1	1	2	2	2	0	Spermine/spermidine	synthase	domain
FAD_binding_2	PF00890.24	gi|227828218|ref|YP_002829998.1|	-	0.16	11.0	0.0	0.22	10.5	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
XPG_I	PF00867.18	gi|227828219|ref|YP_002829999.1|	-	3.7e-26	91.3	0.0	8.9e-26	90.1	0.0	1.7	2	0	0	2	2	2	1	XPG	I-region
XPG_N	PF00752.17	gi|227828219|ref|YP_002829999.1|	-	9.5e-11	42.1	0.0	2.2e-10	40.9	0.0	1.6	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|227828219|ref|YP_002829999.1|	-	1.4e-05	25.6	0.1	1.4e-05	25.6	0.1	2.0	2	0	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
Ribosomal_S13	PF00416.22	gi|227828219|ref|YP_002829999.1|	-	0.0054	17.1	0.2	0.0054	17.1	0.2	1.8	2	0	0	2	2	2	1	Ribosomal	protein	S13/S18
DUF2458	PF10454.9	gi|227828219|ref|YP_002829999.1|	-	0.0093	15.6	1.0	0.013	15.2	0.3	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2458)
HHH_5	PF14520.6	gi|227828219|ref|YP_002829999.1|	-	0.023	15.3	0.1	0.08	13.6	0.1	1.9	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
PIN_2	PF10130.9	gi|227828219|ref|YP_002829999.1|	-	0.078	13.2	1.2	0.4	10.9	0.3	2.2	2	0	0	2	2	2	0	PIN	domain
La	PF05383.17	gi|227828220|ref|YP_002830000.1|	-	0.041	13.9	0.2	0.13	12.4	0.0	1.8	1	1	1	2	2	2	0	La	domain
AAA	PF00004.29	gi|227828221|ref|YP_002830001.1|	-	2.1e-97	322.6	0.0	3.9e-48	163.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|227828221|ref|YP_002830001.1|	-	8.3e-34	115.1	1.9	1.5e-15	56.7	0.5	3.2	3	1	0	3	3	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|227828221|ref|YP_002830001.1|	-	5.5e-33	113.0	3.1	1.9e-32	111.3	1.9	2.4	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|227828221|ref|YP_002830001.1|	-	1.3e-16	60.8	0.0	4.6e-08	33.0	0.0	2.9	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CDC48_2	PF02933.17	gi|227828221|ref|YP_002830001.1|	-	7.8e-16	57.6	1.0	7.8e-16	57.6	1.0	2.0	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_2	PF07724.14	gi|227828221|ref|YP_002830001.1|	-	1.2e-13	51.5	0.1	3.6e-06	27.2	0.0	3.3	3	0	0	3	3	3	2	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|227828221|ref|YP_002830001.1|	-	1.6e-12	48.1	0.1	4.8e-06	27.0	0.0	3.5	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_5	PF07728.14	gi|227828221|ref|YP_002830001.1|	-	8.5e-12	45.3	1.0	0.00073	19.5	0.1	4.8	3	2	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|227828221|ref|YP_002830001.1|	-	1e-11	45.2	0.5	0.0045	17.3	0.0	4.4	2	2	2	4	4	4	2	AAA	domain
TIP49	PF06068.13	gi|227828221|ref|YP_002830001.1|	-	1.3e-10	41.1	1.2	0.00016	21.0	0.0	3.1	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|227828221|ref|YP_002830001.1|	-	6.3e-10	39.4	0.0	0.0018	18.4	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|227828221|ref|YP_002830001.1|	-	1.2e-09	38.1	0.0	0.00084	19.1	0.0	2.9	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|227828221|ref|YP_002830001.1|	-	4.9e-09	36.8	0.0	0.0051	17.3	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|227828221|ref|YP_002830001.1|	-	2.1e-08	34.2	0.0	0.0066	16.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Vps4_C	PF09336.10	gi|227828221|ref|YP_002830001.1|	-	7.8e-08	32.2	3.5	3.4e-05	23.7	1.0	3.0	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
Mg_chelatase	PF01078.21	gi|227828221|ref|YP_002830001.1|	-	2.6e-07	30.2	0.7	0.009	15.4	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|227828221|ref|YP_002830001.1|	-	9.9e-07	29.1	0.0	0.022	15.2	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_24	PF13479.6	gi|227828221|ref|YP_002830001.1|	-	1.1e-06	28.5	0.1	0.034	13.9	0.1	2.8	2	1	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.26	gi|227828221|ref|YP_002830001.1|	-	1.6e-06	27.9	0.0	0.25	11.0	0.0	4.2	3	1	0	3	3	3	2	Sigma-54	interaction	domain
AAA_28	PF13521.6	gi|227828221|ref|YP_002830001.1|	-	2e-06	28.2	0.0	0.051	13.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
ATPase_2	PF01637.18	gi|227828221|ref|YP_002830001.1|	-	9.7e-06	25.7	0.4	0.019	14.9	0.1	3.6	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_3	PF07726.11	gi|227828221|ref|YP_002830001.1|	-	1e-05	25.4	0.0	0.069	13.0	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|227828221|ref|YP_002830001.1|	-	1.1e-05	26.0	0.0	0.07	13.6	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
TsaE	PF02367.17	gi|227828221|ref|YP_002830001.1|	-	1.2e-05	25.3	0.0	0.24	11.4	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Zeta_toxin	PF06414.12	gi|227828221|ref|YP_002830001.1|	-	2.1e-05	23.9	3.6	0.097	11.9	0.0	3.9	3	1	1	4	4	4	2	Zeta	toxin
NACHT	PF05729.12	gi|227828221|ref|YP_002830001.1|	-	3.8e-05	23.7	0.4	0.32	10.9	0.0	2.8	2	1	0	2	2	2	2	NACHT	domain
Parvo_NS1	PF01057.17	gi|227828221|ref|YP_002830001.1|	-	4.1e-05	22.8	0.7	0.15	11.1	0.0	2.9	3	0	0	3	3	3	2	Parvovirus	non-structural	protein	NS1
AAA_7	PF12775.7	gi|227828221|ref|YP_002830001.1|	-	5.1e-05	22.9	0.0	0.38	10.2	0.0	2.7	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
DUF815	PF05673.13	gi|227828221|ref|YP_002830001.1|	-	0.00013	21.2	0.0	0.16	11.1	0.0	2.9	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Bac_DnaA	PF00308.18	gi|227828221|ref|YP_002830001.1|	-	0.00025	21.0	0.0	0.047	13.5	0.0	2.9	2	2	0	2	2	2	1	Bacterial	dnaA	protein
NB-ARC	PF00931.22	gi|227828221|ref|YP_002830001.1|	-	0.0003	20.1	0.0	0.18	11.0	0.0	3.0	3	0	0	3	3	3	1	NB-ARC	domain
AAA_17	PF13207.6	gi|227828221|ref|YP_002830001.1|	-	0.00041	20.8	0.1	0.95	9.9	0.0	3.3	3	0	0	3	3	2	1	AAA	domain
ATPase	PF06745.13	gi|227828221|ref|YP_002830001.1|	-	0.00069	19.0	4.3	0.27	10.5	0.0	4.0	5	0	0	5	5	4	1	KaiC
AAA_25	PF13481.6	gi|227828221|ref|YP_002830001.1|	-	0.0012	18.4	6.1	0.44	10.1	0.4	3.7	2	2	0	3	3	3	2	AAA	domain
UFD1	PF03152.14	gi|227828221|ref|YP_002830001.1|	-	0.0015	18.1	0.0	0.0051	16.3	0.0	1.9	1	1	1	2	2	2	1	Ubiquitin	fusion	degradation	protein	UFD1
PhoH	PF02562.16	gi|227828221|ref|YP_002830001.1|	-	0.0015	18.0	0.2	0.38	10.2	0.1	2.6	2	0	0	2	2	2	1	PhoH-like	protein
AFG1_ATPase	PF03969.16	gi|227828221|ref|YP_002830001.1|	-	0.0019	17.2	0.1	1.6	7.6	0.0	2.4	2	1	0	2	2	2	2	AFG1-like	ATPase
AAA_19	PF13245.6	gi|227828221|ref|YP_002830001.1|	-	0.002	18.4	0.5	2.9	8.2	0.0	3.1	2	1	1	3	3	3	1	AAA	domain
Guanylate_kin	PF00625.21	gi|227828221|ref|YP_002830001.1|	-	0.0056	16.4	0.1	15	5.2	0.0	3.9	2	2	2	4	4	4	0	Guanylate	kinase
NTPase_1	PF03266.15	gi|227828221|ref|YP_002830001.1|	-	0.0059	16.5	2.3	4.6	7.1	0.0	4.2	3	1	1	4	4	4	0	NTPase
TniB	PF05621.11	gi|227828221|ref|YP_002830001.1|	-	0.0069	15.8	0.0	1.9	7.8	0.0	2.8	3	0	0	3	3	2	1	Bacterial	TniB	protein
AAA_11	PF13086.6	gi|227828221|ref|YP_002830001.1|	-	0.014	15.2	0.5	1.6	8.4	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
Rad17	PF03215.15	gi|227828221|ref|YP_002830001.1|	-	0.018	15.0	0.0	5.2	6.9	0.0	2.8	2	1	1	3	3	3	0	Rad17	P-loop	domain
PduV-EutP	PF10662.9	gi|227828221|ref|YP_002830001.1|	-	0.019	14.7	0.0	7.3	6.3	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_30	PF13604.6	gi|227828221|ref|YP_002830001.1|	-	0.019	14.7	0.5	3.6	7.3	0.2	2.5	2	0	0	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|227828221|ref|YP_002830001.1|	-	0.022	14.5	0.0	1.7	8.3	0.0	2.4	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
ATP-synt_ab	PF00006.25	gi|227828221|ref|YP_002830001.1|	-	0.022	14.4	0.0	2.5	7.7	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Sigma54_activ_2	PF14532.6	gi|227828221|ref|YP_002830001.1|	-	0.027	14.6	0.0	11	6.1	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
IPT	PF01745.16	gi|227828221|ref|YP_002830001.1|	-	0.034	13.6	0.1	1.4	8.3	0.0	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
DUF2075	PF09848.9	gi|227828221|ref|YP_002830001.1|	-	0.037	13.3	0.0	6	6.0	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_29	PF13555.6	gi|227828221|ref|YP_002830001.1|	-	0.07	12.9	0.0	14	5.5	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|227828221|ref|YP_002830001.1|	-	0.08	13.0	0.0	7.5	6.7	0.0	3.3	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
Roc	PF08477.13	gi|227828221|ref|YP_002830001.1|	-	0.1	12.8	0.0	12	6.1	0.0	2.6	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ResIII	PF04851.15	gi|227828221|ref|YP_002830001.1|	-	0.12	12.4	0.0	15	5.6	0.0	2.6	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
SPT16	PF08644.11	gi|227828221|ref|YP_002830001.1|	-	0.25	11.5	2.1	0.77	9.9	0.1	2.3	2	0	0	2	2	2	0	FACT	complex	subunit	(SPT16/CDC68)
EF1_GNE	PF00736.19	gi|227828222|ref|YP_002830002.1|	-	2.8e-17	62.7	0.0	3.1e-17	62.5	0.0	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF1610	PF07754.11	gi|227828223|ref|YP_002830003.1|	-	7e-18	64.3	11.0	1.3e-13	50.6	5.5	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.6	gi|227828223|ref|YP_002830003.1|	-	2.3e-08	33.2	8.1	0.00093	18.5	0.2	3.1	3	0	0	3	3	3	3	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|227828223|ref|YP_002830003.1|	-	1.1e-06	28.5	4.4	5.2e-05	23.1	1.1	2.1	1	1	1	2	2	2	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|227828223|ref|YP_002830003.1|	-	9.8e-06	25.5	4.1	2.8e-05	24.1	4.3	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-C2HC5	PF06221.13	gi|227828223|ref|YP_002830003.1|	-	0.00016	21.6	8.3	0.00064	19.7	1.7	2.2	1	1	1	2	2	2	2	Putative	zinc	finger	motif,	C2HC5-type
zf-NADH-PPase	PF09297.11	gi|227828223|ref|YP_002830003.1|	-	0.00039	20.0	3.1	0.0039	16.8	0.3	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
DUF35_N	PF12172.8	gi|227828223|ref|YP_002830003.1|	-	0.00045	20.0	6.6	0.72	9.8	0.0	3.1	3	0	0	3	3	3	2	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.12	gi|227828223|ref|YP_002830003.1|	-	0.00058	19.3	12.5	0.045	13.3	6.3	3.1	1	1	0	2	2	2	1	TFIIB	zinc-binding
zf-ACC	PF17848.1	gi|227828223|ref|YP_002830003.1|	-	0.00089	19.3	7.4	0.26	11.4	0.0	3.3	3	0	0	3	3	3	1	Acetyl-coA	carboxylase	zinc	finger	domain
zinc_ribbon_2	PF13240.6	gi|227828223|ref|YP_002830003.1|	-	0.0012	18.5	15.6	0.24	11.1	6.3	3.2	2	1	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_10	PF10058.9	gi|227828223|ref|YP_002830003.1|	-	0.0014	18.3	10.6	0.27	11.0	0.6	2.9	2	1	0	2	2	2	2	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zinc_ribbon_4	PF13717.6	gi|227828223|ref|YP_002830003.1|	-	0.0016	18.3	5.7	0.46	10.4	0.0	3.2	3	0	0	3	3	3	1	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|227828223|ref|YP_002830003.1|	-	0.0021	18.2	15.6	0.023	14.9	1.6	2.1	1	1	1	2	2	2	2	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf_UBZ	PF18439.1	gi|227828223|ref|YP_002830003.1|	-	0.0021	17.6	5.7	2.9	7.6	0.1	3.2	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-RING_7	PF02591.15	gi|227828223|ref|YP_002830003.1|	-	0.0021	18.2	10.3	0.68	10.2	0.3	3.2	3	0	0	3	3	3	1	C4-type	zinc	ribbon	domain
zf-LITAF-like	PF10601.9	gi|227828223|ref|YP_002830003.1|	-	0.0024	18.1	7.5	0.18	12.1	0.0	3.0	2	1	1	3	3	3	1	LITAF-like	zinc	ribbon	domain
DHHC	PF01529.20	gi|227828223|ref|YP_002830003.1|	-	0.0029	17.7	1.2	0.004	17.2	1.2	1.3	1	0	0	1	1	1	1	DHHC	palmitoyltransferase
ADK_lid	PF05191.14	gi|227828223|ref|YP_002830003.1|	-	0.0041	17.1	7.9	0.01	15.8	1.9	2.5	2	1	0	2	2	2	1	Adenylate	kinase,	active	site	lid
HypA	PF01155.19	gi|227828223|ref|YP_002830003.1|	-	0.005	16.9	4.4	0.009	16.0	0.3	2.0	1	1	1	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|227828223|ref|YP_002830003.1|	-	0.011	15.8	10.4	0.11	12.7	4.6	2.4	1	1	2	3	3	3	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|227828223|ref|YP_002830003.1|	-	0.013	15.2	6.9	1.3	8.8	0.1	3.2	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
DUF1272	PF06906.11	gi|227828223|ref|YP_002830003.1|	-	0.023	14.8	8.5	27	4.9	8.5	2.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Nudix_N_2	PF14803.6	gi|227828223|ref|YP_002830003.1|	-	0.024	14.6	9.2	9.4	6.3	0.1	3.3	2	1	0	2	2	2	0	Nudix	N-terminal
NOB1_Zn_bind	PF08772.11	gi|227828223|ref|YP_002830003.1|	-	0.029	14.5	0.8	0.029	14.5	0.8	2.1	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-CHY	PF05495.12	gi|227828223|ref|YP_002830003.1|	-	0.036	14.6	4.9	0.78	10.3	4.9	2.0	1	1	0	1	1	1	0	CHY	zinc	finger
C1_2	PF03107.16	gi|227828223|ref|YP_002830003.1|	-	0.043	14.1	7.3	2.4	8.5	0.9	2.1	1	1	1	2	2	2	0	C1	domain
IBR	PF01485.21	gi|227828223|ref|YP_002830003.1|	-	0.051	13.8	8.1	0.13	12.6	3.4	2.1	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_15	PF17032.5	gi|227828223|ref|YP_002830003.1|	-	0.056	14.2	1.0	0.056	14.2	1.0	2.2	1	1	1	2	2	2	0	zinc-ribbon	family
zf-UDP	PF14569.6	gi|227828223|ref|YP_002830003.1|	-	0.063	13.4	5.1	0.078	13.1	5.1	1.1	1	0	0	1	1	1	0	Zinc-binding	RING-finger
zf-Mss51	PF13824.6	gi|227828223|ref|YP_002830003.1|	-	0.074	13.2	9.5	1.7	8.8	2.6	2.5	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-RRN7	PF11781.8	gi|227828223|ref|YP_002830003.1|	-	0.076	12.7	5.4	4.1	7.2	0.1	3.1	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HscB_4_cys	PF18256.1	gi|227828223|ref|YP_002830003.1|	-	0.088	12.6	1.4	0.088	12.6	1.4	2.4	2	0	0	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
zf_Rg	PF17915.1	gi|227828223|ref|YP_002830003.1|	-	0.091	12.2	5.5	2.2	7.7	0.1	2.6	3	0	0	3	3	2	0	Reverse	gyrase	zinc	finger
Sgf11	PF08209.11	gi|227828223|ref|YP_002830003.1|	-	0.091	12.3	7.3	2.2	7.9	0.2	3.2	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
Acetone_carb_G	PF08882.11	gi|227828223|ref|YP_002830003.1|	-	0.12	12.5	7.0	1.4	9.1	1.2	2.4	1	1	0	2	2	2	0	Acetone	carboxylase	gamma	subunit
NinF	PF05810.12	gi|227828223|ref|YP_002830003.1|	-	0.13	12.2	2.7	0.21	11.5	0.5	2.1	1	1	1	2	2	2	0	NinF	protein
YhfH	PF14149.6	gi|227828223|ref|YP_002830003.1|	-	0.13	12.3	8.4	3.5	7.7	0.6	3.2	2	1	1	3	3	3	0	YhfH-like	protein
C1_1	PF00130.22	gi|227828223|ref|YP_002830003.1|	-	0.16	11.8	5.1	0.089	12.7	1.7	1.9	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-HIT	PF04438.16	gi|227828223|ref|YP_002830003.1|	-	0.17	11.7	8.1	1.5	8.8	0.9	3.1	3	0	0	3	3	3	0	HIT	zinc	finger
PhnA_Zn_Ribbon	PF08274.12	gi|227828223|ref|YP_002830003.1|	-	0.21	11.6	6.6	4.4	7.3	0.1	3.1	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
zf-B_box	PF00643.24	gi|227828223|ref|YP_002830003.1|	-	0.22	11.7	7.0	0.74	10.0	1.6	2.8	2	1	0	2	2	2	0	B-box	zinc	finger
PHD	PF00628.29	gi|227828223|ref|YP_002830003.1|	-	0.23	11.4	8.4	8.8	6.3	2.3	2.9	1	1	1	2	2	2	0	PHD-finger
CK_II_beta	PF01214.18	gi|227828223|ref|YP_002830003.1|	-	0.25	11.1	3.3	0.12	12.2	0.7	1.7	1	1	1	2	2	2	0	Casein	kinase	II	regulatory	subunit
MqsA_antitoxin	PF15731.5	gi|227828223|ref|YP_002830003.1|	-	0.31	11.1	2.8	2.8	8.1	0.1	2.4	1	1	1	2	2	2	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
zf-C2H2	PF00096.26	gi|227828223|ref|YP_002830003.1|	-	0.4	11.2	9.5	0.86	10.2	0.3	3.1	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
DUF2321	PF10083.9	gi|227828223|ref|YP_002830003.1|	-	0.45	10.1	4.4	2.6	7.7	4.7	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
Spt4	PF06093.13	gi|227828223|ref|YP_002830003.1|	-	0.48	10.6	4.9	0.61	10.2	0.7	2.1	1	1	1	2	2	2	0	Spt4/RpoE2	zinc	finger
Ribosomal_L32p	PF01783.23	gi|227828223|ref|YP_002830003.1|	-	0.51	10.6	8.8	14	6.1	5.3	3.0	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
Zn_ribbon_SprT	PF17283.2	gi|227828223|ref|YP_002830003.1|	-	0.58	10.1	12.0	3.4	7.6	2.5	3.0	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
DpnI	PF06044.12	gi|227828223|ref|YP_002830003.1|	-	0.64	9.6	3.3	0.53	9.9	2.6	1.3	1	1	0	1	1	1	0	Dam-replacing	family
zf-MYND	PF01753.18	gi|227828223|ref|YP_002830003.1|	-	0.67	10.1	6.1	0.93	9.6	0.7	2.1	2	0	0	2	2	2	0	MYND	finger
Rubredoxin	PF00301.20	gi|227828223|ref|YP_002830003.1|	-	0.68	10.0	7.0	6.8	6.8	0.1	3.0	2	1	1	3	3	3	0	Rubredoxin
tRNA-synt_1f	PF01921.18	gi|227828223|ref|YP_002830003.1|	-	0.69	8.8	1.6	1.2	8.0	1.6	1.5	1	1	0	1	1	1	0	tRNA	synthetases	class	I	(K)
Anti-TRAP	PF15777.5	gi|227828223|ref|YP_002830003.1|	-	0.86	9.6	7.6	0.21	11.6	1.1	2.1	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zinc_ribbon_9	PF14369.6	gi|227828223|ref|YP_002830003.1|	-	1.6	9.1	13.7	4.9	7.5	2.5	3.5	2	2	1	3	3	3	0	zinc-ribbon
DUF2072	PF09845.9	gi|227828223|ref|YP_002830003.1|	-	1.9	8.7	9.0	0.38	11.0	2.1	2.0	1	1	0	2	2	2	0	Zn-ribbon	containing	protein
Rpr2	PF04032.16	gi|227828223|ref|YP_002830003.1|	-	2.4	8.5	6.8	65	3.9	6.8	2.7	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
CpXC	PF14353.6	gi|227828223|ref|YP_002830003.1|	-	3.2	7.8	8.0	17	5.5	0.5	2.9	1	1	2	3	3	3	0	CpXC	protein
PknG_rubred	PF16919.5	gi|227828223|ref|YP_002830003.1|	-	4.9	7.3	6.3	1	9.6	2.2	1.7	1	1	1	2	2	2	0	Protein	kinase	G	rubredoxin	domain
DNA_ligase_ZBD	PF03119.16	gi|227828223|ref|YP_002830003.1|	-	5.2	7.2	11.6	1.5	9.0	6.6	2.6	1	1	1	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Terminase_GpA	PF05876.12	gi|227828223|ref|YP_002830003.1|	-	5.9	5.3	5.4	33	2.8	0.1	1.8	1	1	1	2	2	2	0	Phage	terminase	large	subunit	(GpA)
zf-H2C2_2	PF13465.6	gi|227828223|ref|YP_002830003.1|	-	7.1	7.2	11.3	2.5	8.7	0.9	3.2	2	2	1	3	3	3	0	Zinc-finger	double	domain
Zn_Tnp_IS1595	PF12760.7	gi|227828223|ref|YP_002830003.1|	-	7.4	6.6	15.1	15	5.6	2.2	3.2	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
PTH2	PF01981.16	gi|227828224|ref|YP_002830004.1|	-	3.7e-42	143.3	0.0	4.1e-42	143.2	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
TruD	PF01142.18	gi|227828225|ref|YP_002830005.1|	-	2.7e-62	210.9	0.2	8.3e-52	176.4	0.1	2.0	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase	D	(TruD)
DUF3979	PF13141.6	gi|227828225|ref|YP_002830005.1|	-	0.06	13.6	1.7	1.3	9.3	1.7	2.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3979)
tRNA-synt_2	PF00152.20	gi|227828226|ref|YP_002830006.1|	-	2.1e-92	309.6	0.0	2.5e-92	309.3	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|227828226|ref|YP_002830006.1|	-	4.9e-13	48.9	0.3	1.2e-12	47.6	0.3	1.7	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
RBD	PF02196.15	gi|227828226|ref|YP_002830006.1|	-	0.046	13.8	0.0	0.11	12.5	0.0	1.6	1	0	0	1	1	1	0	Raf-like	Ras-binding	domain
tRNA-synt_2d	PF01409.20	gi|227828226|ref|YP_002830006.1|	-	0.061	12.8	0.1	5.9	6.3	0.0	2.4	3	0	0	3	3	3	0	tRNA	synthetases	class	II	core	domain	(F)
MAT1	PF06391.13	gi|227828226|ref|YP_002830006.1|	-	0.15	11.9	0.3	0.23	11.2	0.3	1.2	1	0	0	1	1	1	0	CDK-activating	kinase	assembly	factor	MAT1
KH_5	PF13184.6	gi|227828227|ref|YP_002830007.1|	-	0.0014	18.6	0.2	0.0027	17.8	0.2	1.4	1	0	0	1	1	1	1	NusA-like	KH	domain
Ribosomal_L40e	PF01020.17	gi|227828228|ref|YP_002830008.1|	-	2.1e-09	37.1	6.1	2.6e-09	36.8	6.1	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
DUF35_N	PF12172.8	gi|227828228|ref|YP_002830008.1|	-	3.7e-05	23.5	0.8	4.1e-05	23.3	0.8	1.1	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|227828228|ref|YP_002830008.1|	-	0.0028	17.6	0.3	0.0032	17.5	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|227828228|ref|YP_002830008.1|	-	0.0028	17.3	1.8	0.0044	16.7	1.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|227828228|ref|YP_002830008.1|	-	0.007	16.4	0.4	0.0075	16.3	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-tcix	PF14952.6	gi|227828228|ref|YP_002830008.1|	-	0.019	14.6	7.5	0.059	13.0	7.5	1.8	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-RanBP	PF00641.18	gi|227828228|ref|YP_002830008.1|	-	0.02	14.2	3.1	0.026	13.8	3.1	1.2	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
Paired_CXXCH_1	PF09699.10	gi|227828228|ref|YP_002830008.1|	-	0.037	13.8	2.0	0.038	13.7	0.2	1.8	2	0	0	2	2	2	0	Doubled	CXXCH	motif	(Paired_CXXCH_1)
zf-ribbon_3	PF13248.6	gi|227828228|ref|YP_002830008.1|	-	0.062	12.7	1.2	0.089	12.2	1.2	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227828228|ref|YP_002830008.1|	-	0.27	11.4	3.1	1.6	8.9	3.2	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|227828228|ref|YP_002830008.1|	-	0.36	10.6	3.2	0.58	9.9	3.2	1.4	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
RNA_POL_M_15KD	PF02150.16	gi|227828228|ref|YP_002830008.1|	-	0.76	9.7	3.8	1.3	8.9	0.1	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-RRN7	PF11781.8	gi|227828228|ref|YP_002830008.1|	-	2.2	8.0	5.4	17	5.2	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DUF2204	PF09970.9	gi|227828229|ref|YP_002830009.1|	-	5.7e-58	195.5	2.4	6.3e-58	195.4	2.4	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
TPP_enzyme_M	PF00205.22	gi|227828230|ref|YP_002830010.1|	-	1.3e-37	128.6	0.5	7.3e-37	126.2	0.1	2.3	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_N	PF02776.18	gi|227828230|ref|YP_002830010.1|	-	1.3e-21	77.0	0.0	2.1e-21	76.3	0.0	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PNTB	PF02233.16	gi|227828230|ref|YP_002830010.1|	-	0.00029	19.9	0.0	0.00052	19.1	0.0	1.3	1	0	0	1	1	1	1	NAD(P)	transhydrogenase	beta	subunit
ABC_tran	PF00005.27	gi|227828233|ref|YP_002830013.1|	-	6.4e-33	114.2	0.1	3e-17	63.4	0.0	3.2	2	1	1	3	3	3	3	ABC	transporter
AAA_21	PF13304.6	gi|227828233|ref|YP_002830013.1|	-	5.2e-15	56.0	5.3	0.0028	17.5	0.0	4.2	3	1	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|227828233|ref|YP_002830013.1|	-	5.4e-09	35.7	0.3	0.0038	16.9	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|227828233|ref|YP_002830013.1|	-	2.7e-06	27.0	4.7	0.41	10.0	1.4	4.1	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
cobW	PF02492.19	gi|227828233|ref|YP_002830013.1|	-	1.1e-05	25.1	0.1	0.019	14.6	0.0	2.4	2	0	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
Pox_A32	PF04665.12	gi|227828233|ref|YP_002830013.1|	-	1.1e-05	25.0	2.4	0.014	14.9	0.1	2.7	2	1	0	2	2	2	2	Poxvirus	A32	protein
AAA	PF00004.29	gi|227828233|ref|YP_002830013.1|	-	1.3e-05	25.7	0.4	0.0062	17.0	0.0	2.7	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|227828233|ref|YP_002830013.1|	-	1.6e-05	24.9	0.8	0.071	13.1	0.0	3.1	2	1	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|227828233|ref|YP_002830013.1|	-	2.4e-05	23.6	2.0	0.015	14.5	0.0	2.7	2	1	0	2	2	2	2	NB-ARC	domain
AAA_15	PF13175.6	gi|227828233|ref|YP_002830013.1|	-	2.6e-05	24.1	8.7	0.0062	16.3	0.3	2.8	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|227828233|ref|YP_002830013.1|	-	2.7e-05	24.6	0.5	0.022	15.2	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|227828233|ref|YP_002830013.1|	-	3.5e-05	23.8	2.3	0.02	14.8	0.0	2.7	2	1	0	2	2	2	2	NACHT	domain
AAA_24	PF13479.6	gi|227828233|ref|YP_002830013.1|	-	3.5e-05	23.6	0.1	0.2	11.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
G-alpha	PF00503.20	gi|227828233|ref|YP_002830013.1|	-	7.6e-05	22.0	1.0	0.14	11.3	0.2	2.1	1	1	1	2	2	2	2	G-protein	alpha	subunit
AAA_22	PF13401.6	gi|227828233|ref|YP_002830013.1|	-	0.00024	21.4	1.0	0.036	14.4	0.0	2.7	2	1	1	3	3	2	1	AAA	domain
Roc	PF08477.13	gi|227828233|ref|YP_002830013.1|	-	0.00027	21.1	0.1	0.44	10.8	0.0	2.5	2	0	0	2	2	2	2	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_23	PF13476.6	gi|227828233|ref|YP_002830013.1|	-	0.00027	21.5	9.5	0.017	15.6	0.1	2.7	1	1	1	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|227828233|ref|YP_002830013.1|	-	0.00029	20.4	0.0	0.34	10.4	0.0	2.3	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
DUF3584	PF12128.8	gi|227828233|ref|YP_002830013.1|	-	0.00031	18.4	1.3	0.012	13.1	0.1	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3584)
AAA_33	PF13671.6	gi|227828233|ref|YP_002830013.1|	-	0.00045	20.4	0.3	1.6	8.9	0.0	3.0	2	1	1	3	3	3	1	AAA	domain
SRP54	PF00448.22	gi|227828233|ref|YP_002830013.1|	-	0.00052	19.7	0.0	0.37	10.4	0.0	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
TsaE	PF02367.17	gi|227828233|ref|YP_002830013.1|	-	0.00083	19.4	0.1	0.26	11.3	0.0	2.5	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MMR_HSR1	PF01926.23	gi|227828233|ref|YP_002830013.1|	-	0.0012	18.9	0.0	2.4	8.2	0.0	2.6	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
MobB	PF03205.14	gi|227828233|ref|YP_002830013.1|	-	0.0014	18.5	3.6	0.48	10.3	0.1	2.8	3	0	0	3	3	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.15	gi|227828233|ref|YP_002830013.1|	-	0.0017	18.3	0.4	1.5	8.7	0.1	3.1	3	1	0	3	3	2	1	NTPase
Viral_helicase1	PF01443.18	gi|227828233|ref|YP_002830013.1|	-	0.0026	17.5	0.0	0.78	9.4	0.0	2.3	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|227828233|ref|YP_002830013.1|	-	0.0038	17.0	0.0	1	9.0	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
AAA_5	PF07728.14	gi|227828233|ref|YP_002830013.1|	-	0.0046	17.0	0.1	0.63	10.0	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Arf	PF00025.21	gi|227828233|ref|YP_002830013.1|	-	0.005	16.3	0.4	0.25	10.8	0.0	2.3	2	0	0	2	2	2	1	ADP-ribosylation	factor	family
AAA_25	PF13481.6	gi|227828233|ref|YP_002830013.1|	-	0.0061	16.1	0.0	1.1	8.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|227828233|ref|YP_002830013.1|	-	0.0077	16.6	0.2	2.2	8.6	0.0	3.1	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|227828233|ref|YP_002830013.1|	-	0.01	16.4	2.5	1.8	9.1	0.0	2.8	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|227828233|ref|YP_002830013.1|	-	0.011	16.1	2.4	3.4	8.1	0.0	3.5	2	1	1	3	3	3	0	RNA	helicase
PduV-EutP	PF10662.9	gi|227828233|ref|YP_002830013.1|	-	0.012	15.4	0.4	6.2	6.6	0.0	2.6	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
RsgA_GTPase	PF03193.16	gi|227828233|ref|YP_002830013.1|	-	0.015	15.2	1.7	2.2	8.1	0.0	2.9	2	1	1	3	3	3	0	RsgA	GTPase
TrwB_AAD_bind	PF10412.9	gi|227828233|ref|YP_002830013.1|	-	0.016	14.1	0.0	0.85	8.5	0.0	2.2	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Septin	PF00735.18	gi|227828233|ref|YP_002830013.1|	-	0.021	14.1	0.1	4.7	6.4	0.0	2.7	3	0	0	3	3	3	0	Septin
ATP-synt_ab	PF00006.25	gi|227828233|ref|YP_002830013.1|	-	0.023	14.4	0.0	1	9.0	0.0	2.2	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
VirE	PF05272.11	gi|227828233|ref|YP_002830013.1|	-	0.025	14.3	0.1	6.3	6.5	0.0	2.3	2	0	0	2	2	2	0	Virulence-associated	protein	E
SbcCD_C	PF13558.6	gi|227828233|ref|YP_002830013.1|	-	0.029	14.6	0.0	0.22	11.8	0.0	2.3	2	0	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
ATPase_2	PF01637.18	gi|227828233|ref|YP_002830013.1|	-	0.032	14.2	1.8	3.5	7.5	0.1	2.7	2	1	1	3	3	3	0	ATPase	domain	predominantly	from	Archaea
Zeta_toxin	PF06414.12	gi|227828233|ref|YP_002830013.1|	-	0.036	13.4	0.0	7.9	5.7	0.0	2.4	2	0	0	2	2	2	0	Zeta	toxin
AAA_13	PF13166.6	gi|227828233|ref|YP_002830013.1|	-	0.038	12.7	0.2	5.9	5.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|227828233|ref|YP_002830013.1|	-	0.045	14.0	0.4	1.5	9.0	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|227828233|ref|YP_002830013.1|	-	0.073	12.1	0.0	3.2	6.7	0.0	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
CbiA	PF01656.23	gi|227828233|ref|YP_002830013.1|	-	0.089	12.8	0.1	7.1	6.7	0.1	2.5	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PhoH	PF02562.16	gi|227828233|ref|YP_002830013.1|	-	0.099	12.1	0.1	11	5.5	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
AAA_27	PF13514.6	gi|227828233|ref|YP_002830013.1|	-	0.13	11.8	0.0	8.2	6.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|227828233|ref|YP_002830013.1|	-	0.15	11.4	2.2	1.4	8.2	0.0	2.7	3	1	0	3	3	3	0	FtsK/SpoIIIE	family
AAA_17	PF13207.6	gi|227828233|ref|YP_002830013.1|	-	0.16	12.4	0.5	5.7	7.4	0.0	3.1	3	1	0	3	3	3	0	AAA	domain
Epimerase	PF01370.21	gi|227828234|ref|YP_002830014.1|	-	4.2e-46	157.4	0.1	5.7e-46	156.9	0.1	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|227828234|ref|YP_002830014.1|	-	4.3e-44	151.3	0.1	7e-44	150.6	0.1	1.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|227828234|ref|YP_002830014.1|	-	1.9e-12	46.9	0.0	2.4e-12	46.6	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|227828234|ref|YP_002830014.1|	-	4.2e-12	45.6	0.5	5.3e-12	45.3	0.5	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|227828234|ref|YP_002830014.1|	-	5.3e-09	35.6	2.0	6.8e-08	32.0	2.0	2.5	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|227828234|ref|YP_002830014.1|	-	2.3e-07	30.3	0.4	0.0001	21.6	0.0	2.3	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|227828234|ref|YP_002830014.1|	-	0.0018	18.2	0.0	0.0027	17.6	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
KR	PF08659.10	gi|227828234|ref|YP_002830014.1|	-	0.012	15.6	0.1	0.092	12.6	0.1	2.1	2	0	0	2	2	2	0	KR	domain
Bacteriocin_IIi	PF11758.8	gi|227828234|ref|YP_002830014.1|	-	0.21	11.4	1.6	1.9	8.4	0.4	2.5	2	0	0	2	2	2	0	Aureocin-like	type	II	bacteriocin
SRP19	PF01922.17	gi|227828235|ref|YP_002830015.1|	-	1.1e-06	29.5	0.2	1.5e-06	29.0	0.2	1.3	1	0	0	1	1	1	1	SRP19	protein
MRP_L53	PF10780.9	gi|227828235|ref|YP_002830015.1|	-	0.13	12.5	0.2	0.27	11.5	0.1	1.6	2	0	0	2	2	2	0	39S	ribosomal	protein	L53/MRP-L53
Ribosomal_S8e	PF01201.22	gi|227828236|ref|YP_002830016.1|	-	1e-28	100.2	0.4	1.2e-28	100.0	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Prenyltransf	PF01255.19	gi|227828237|ref|YP_002830017.1|	-	3.2e-66	223.1	0.1	3.7e-66	222.9	0.1	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Peptidase_M20	PF01546.28	gi|227828238|ref|YP_002830018.1|	-	8.2e-26	91.0	0.0	1e-25	90.7	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|227828238|ref|YP_002830018.1|	-	9.6e-08	31.9	0.0	1.8e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|227828238|ref|YP_002830018.1|	-	0.0071	16.1	0.0	0.01	15.5	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
Aminotran_3	PF00202.21	gi|227828239|ref|YP_002830019.1|	-	5.3e-109	364.6	0.0	7.1e-109	364.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|227828239|ref|YP_002830019.1|	-	7e-05	22.2	0.0	0.00015	21.0	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|227828239|ref|YP_002830019.1|	-	0.1	11.5	0.0	0.21	10.5	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	class-V
DUF3198	PF11433.8	gi|227828239|ref|YP_002830019.1|	-	0.64	10.0	3.2	2.9	7.9	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3198)
RimK	PF08443.11	gi|227828240|ref|YP_002830020.1|	-	1.7e-32	112.5	0.0	2.3e-32	112.1	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|227828240|ref|YP_002830020.1|	-	6.2e-12	45.3	0.0	9.1e-12	44.7	0.0	1.3	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|227828240|ref|YP_002830020.1|	-	1.1e-06	28.8	0.0	1.8e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|227828240|ref|YP_002830020.1|	-	4e-06	26.3	0.0	0.00046	19.5	0.0	2.3	2	0	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
CPSase_L_D2	PF02786.17	gi|227828240|ref|YP_002830020.1|	-	2.9e-05	23.7	0.0	7.1e-05	22.4	0.0	1.6	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.13	gi|227828240|ref|YP_002830020.1|	-	9.4e-05	22.0	0.1	0.002	17.7	0.0	2.6	2	1	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.6	gi|227828240|ref|YP_002830020.1|	-	0.00016	21.2	0.0	0.00032	20.2	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
Ins134_P3_kin	PF05770.11	gi|227828240|ref|YP_002830020.1|	-	0.0025	17.4	0.2	0.7	9.4	0.0	2.3	1	1	0	2	2	2	2	Inositol	1,3,4-trisphosphate	5/6-kinase	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|227828240|ref|YP_002830020.1|	-	0.0034	17.0	0.0	0.0073	15.9	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|227828240|ref|YP_002830020.1|	-	0.037	13.8	0.1	0.058	13.2	0.1	1.4	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATPgrasp_YheCD	PF14398.6	gi|227828240|ref|YP_002830020.1|	-	0.064	12.5	0.1	2.6	7.2	0.0	2.2	2	0	0	2	2	2	0	YheC/D	like	ATP-grasp
ATP-grasp_2	PF08442.10	gi|227828240|ref|YP_002830020.1|	-	0.092	12.3	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
TF_Zn_Ribbon	PF08271.12	gi|227828241|ref|YP_002830021.1|	-	0.00076	19.0	0.3	0.0011	18.4	0.3	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Lar_restr_allev	PF14354.6	gi|227828241|ref|YP_002830021.1|	-	0.016	15.6	0.1	0.019	15.4	0.1	1.3	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Prok-RING_1	PF14446.6	gi|227828241|ref|YP_002830021.1|	-	0.02	14.8	0.5	0.029	14.3	0.5	1.4	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DNA_ligase_ZBD	PF03119.16	gi|227828241|ref|YP_002830021.1|	-	0.031	14.3	0.7	0.39	10.8	0.2	2.1	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C4_Topoisom	PF01396.19	gi|227828241|ref|YP_002830021.1|	-	0.21	11.4	1.1	1.4	8.8	0.2	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
AsnC_trans_reg	PF01037.21	gi|227828242|ref|YP_002830022.1|	-	1.2e-14	54.0	0.1	2.2e-14	53.1	0.1	1.5	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|227828242|ref|YP_002830022.1|	-	3.5e-13	48.9	3.9	1.6e-12	46.7	1.9	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|227828242|ref|YP_002830022.1|	-	4.5e-12	45.6	0.1	1.2e-11	44.3	0.2	1.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
NapD	PF03927.13	gi|227828242|ref|YP_002830022.1|	-	3.7e-06	26.9	0.2	7.1e-06	26.0	0.2	1.5	1	1	0	1	1	1	1	NapD	protein
HTH_11	PF08279.12	gi|227828242|ref|YP_002830022.1|	-	9.6e-06	25.5	3.6	1.2e-05	25.2	1.0	2.3	3	0	0	3	3	3	1	HTH	domain
HTH_Mga	PF08280.11	gi|227828242|ref|YP_002830022.1|	-	0.00031	20.7	0.3	0.00067	19.6	0.3	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
MarR	PF01047.22	gi|227828242|ref|YP_002830022.1|	-	0.00088	19.2	0.3	0.0025	17.7	0.2	1.8	2	0	0	2	2	2	1	MarR	family
HTH_DeoR	PF08220.12	gi|227828242|ref|YP_002830022.1|	-	0.0016	18.1	0.3	0.0027	17.4	0.3	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
PAX	PF00292.18	gi|227828242|ref|YP_002830022.1|	-	0.0045	16.9	0.4	0.082	12.8	0.4	2.2	1	1	0	1	1	1	1	'Paired	box'	domain
DUF2250	PF10007.9	gi|227828242|ref|YP_002830022.1|	-	0.01	15.9	0.1	0.018	15.1	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TrmB	PF01978.19	gi|227828242|ref|YP_002830022.1|	-	0.013	15.3	0.2	0.03	14.2	0.2	1.6	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|227828242|ref|YP_002830022.1|	-	0.017	15.0	0.1	0.028	14.3	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Cullin_Nedd8	PF10557.9	gi|227828242|ref|YP_002830022.1|	-	0.02	14.9	0.4	0.02	14.9	0.4	1.8	2	0	0	2	2	1	0	Cullin	protein	neddylation	domain
DMAP1_like	PF17024.5	gi|227828242|ref|YP_002830022.1|	-	0.02	15.0	0.1	0.038	14.1	0.1	1.5	1	0	0	1	1	1	0	Putative	DMAP1-like
HTH_36	PF13730.6	gi|227828242|ref|YP_002830022.1|	-	0.024	14.6	0.2	0.042	13.8	0.2	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|227828242|ref|YP_002830022.1|	-	0.028	14.5	0.0	0.044	13.9	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rio2_N	PF09202.11	gi|227828242|ref|YP_002830022.1|	-	0.048	13.9	0.1	0.29	11.4	0.1	2.0	2	0	0	2	2	2	0	Rio2,	N-terminal
AsnC_trans_reg2	PF17805.1	gi|227828242|ref|YP_002830022.1|	-	0.054	13.7	0.0	0.12	12.5	0.0	1.6	2	0	0	2	2	1	0	AsnC-like	ligand	binding	domain
HTH_6	PF01418.17	gi|227828242|ref|YP_002830022.1|	-	0.072	13.1	0.1	0.14	12.1	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_45	PF14947.6	gi|227828242|ref|YP_002830022.1|	-	0.079	13.0	1.5	0.09	12.8	0.4	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix
NTase_sub_bind	PF08780.11	gi|227828242|ref|YP_002830022.1|	-	0.085	12.8	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Nucleotidyltransferase	substrate	binding	protein	like
Rrf2	PF02082.20	gi|227828242|ref|YP_002830022.1|	-	0.098	13.0	0.1	0.24	11.8	0.1	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
FeoC	PF09012.10	gi|227828242|ref|YP_002830022.1|	-	0.1	12.7	0.0	0.16	12.1	0.0	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
YjcQ	PF09639.10	gi|227828242|ref|YP_002830022.1|	-	0.11	12.8	1.1	0.3	11.3	0.3	2.0	1	1	1	2	2	2	0	YjcQ	protein
MarR_2	PF12802.7	gi|227828242|ref|YP_002830022.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_9	PF08221.11	gi|227828242|ref|YP_002830022.1|	-	0.14	12.3	0.1	0.31	11.2	0.1	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
AA_kinase	PF00696.28	gi|227828243|ref|YP_002830023.1|	-	4.2e-31	108.4	4.9	4.8e-31	108.2	4.9	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
PrpR_N	PF06506.11	gi|227828243|ref|YP_002830023.1|	-	0.05	13.2	0.0	0.13	11.8	0.0	1.7	2	0	0	2	2	2	0	Propionate	catabolism	activator
Semialdhyde_dh	PF01118.24	gi|227828244|ref|YP_002830024.1|	-	2.9e-34	118.1	0.0	1.2e-33	116.1	0.0	2.0	3	0	0	3	3	3	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|227828244|ref|YP_002830024.1|	-	2.8e-08	34.1	0.0	3.8e-08	33.6	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Epimerase	PF01370.21	gi|227828244|ref|YP_002830024.1|	-	0.12	11.8	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
AAA_10	PF12846.7	gi|227828246|ref|YP_002830026.1|	-	3.4e-10	39.4	0.1	6.4e-07	28.6	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.17	gi|227828246|ref|YP_002830026.1|	-	2.1e-08	34.5	1.2	2.1e-08	34.5	1.2	3.2	2	2	0	2	2	2	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|227828246|ref|YP_002830026.1|	-	7.8e-06	24.7	0.1	0.0051	15.5	0.0	2.8	3	0	0	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.18	gi|227828246|ref|YP_002830026.1|	-	9.8e-05	21.8	0.1	0.0059	16.0	0.0	2.5	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.9	gi|227828246|ref|YP_002830026.1|	-	0.00018	20.6	0.0	0.0083	15.1	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T4SS-DNA_transf	PF02534.14	gi|227828246|ref|YP_002830026.1|	-	0.00022	20.2	0.3	0.00081	18.3	0.1	1.9	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
AAA_22	PF13401.6	gi|227828246|ref|YP_002830026.1|	-	0.0019	18.5	1.1	0.31	11.3	0.1	3.6	3	1	0	3	3	3	1	AAA	domain
TraG-D_C	PF12696.7	gi|227828246|ref|YP_002830026.1|	-	0.0025	17.8	0.0	0.0059	16.6	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T2SSE	PF00437.20	gi|227828246|ref|YP_002830026.1|	-	0.0046	16.1	0.0	0.012	14.7	0.0	1.6	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
SRPRB	PF09439.10	gi|227828246|ref|YP_002830026.1|	-	0.0076	15.7	1.5	1.4	8.3	0.2	2.3	2	0	0	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
AAA_7	PF12775.7	gi|227828246|ref|YP_002830026.1|	-	0.011	15.3	0.1	0.52	9.8	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|227828246|ref|YP_002830026.1|	-	0.015	15.8	0.0	0.044	14.3	0.0	1.8	2	0	0	2	2	2	0	ABC	transporter
AAA_5	PF07728.14	gi|227828246|ref|YP_002830026.1|	-	0.031	14.3	0.4	1.7	8.6	0.1	3.1	4	0	0	4	4	4	0	AAA	domain	(dynein-related	subfamily)
ResIII	PF04851.15	gi|227828246|ref|YP_002830026.1|	-	0.032	14.2	0.1	0.16	11.9	0.0	2.2	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|227828246|ref|YP_002830026.1|	-	0.058	13.1	0.7	1.5	8.5	0.0	2.9	3	0	0	3	3	3	0	DEAD/DEAH	box	helicase
Med10	PF09748.9	gi|227828246|ref|YP_002830026.1|	-	0.11	12.5	0.3	0.24	11.4	0.3	1.6	1	0	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
AAA_30	PF13604.6	gi|227828246|ref|YP_002830026.1|	-	0.14	11.9	0.0	0.29	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SIS	PF01380.22	gi|227828247|ref|YP_002830027.1|	-	8.9e-17	61.2	0.1	1.6e-16	60.4	0.1	1.4	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.6	gi|227828247|ref|YP_002830027.1|	-	9.3e-08	32.2	2.5	7e-06	26.1	0.5	2.3	1	1	1	2	2	2	2	SIS	domain
PRMT5	PF05185.16	gi|227828247|ref|YP_002830027.1|	-	0.00051	19.9	0.6	0.5	10.2	0.0	2.2	1	1	1	2	2	2	2	PRMT5	arginine-N-methyltransferase
DUF5405	PF17399.2	gi|227828247|ref|YP_002830027.1|	-	0.092	13.0	0.0	0.27	11.5	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5405)
LigB	PF02900.18	gi|227828247|ref|YP_002830027.1|	-	0.096	11.7	0.0	0.17	10.9	0.0	1.4	2	0	0	2	2	2	0	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
DUF4451	PF14616.6	gi|227828248|ref|YP_002830028.1|	-	0.0086	16.3	0.5	0.023	14.9	0.5	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4451)
zf-Di19	PF05605.12	gi|227828248|ref|YP_002830028.1|	-	0.44	10.9	3.2	0.9	9.9	3.0	1.8	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.6	gi|227828248|ref|YP_002830028.1|	-	0.63	11.0	4.0	14	6.8	0.1	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
NAD_binding_8	PF13450.6	gi|227828250|ref|YP_002830030.1|	-	0.0043	17.3	0.0	0.0078	16.4	0.0	1.4	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|227828252|ref|YP_002830032.1|	-	0.11	12.3	0.0	0.13	12.2	0.0	1.0	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
CitMHS	PF03600.16	gi|227828253|ref|YP_002830033.1|	-	1.9e-34	119.3	25.4	1.9e-34	119.3	25.4	2.0	1	1	1	2	2	2	1	Citrate	transporter
ArsB	PF02040.15	gi|227828253|ref|YP_002830033.1|	-	3.8e-10	39.7	27.8	4.8e-10	39.3	27.8	1.1	1	0	0	1	1	1	1	Arsenical	pump	membrane	protein
DUF3488	PF11992.8	gi|227828253|ref|YP_002830033.1|	-	0.068	12.1	13.0	0.28	10.1	1.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3488)
CitMHS_2	PF16980.5	gi|227828253|ref|YP_002830033.1|	-	0.16	10.6	21.5	6.9	5.2	21.5	2.4	1	1	0	1	1	1	0	Putative	citrate	transport
Arc_PepC_II	PF06847.11	gi|227828254|ref|YP_002830034.1|	-	2.7e-23	82.3	2.7	3.1e-22	78.9	0.4	2.3	2	0	0	2	2	2	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|227828254|ref|YP_002830034.1|	-	1.1e-07	32.2	7.7	1.1e-07	32.2	7.7	1.6	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
CbiG_N	PF11760.8	gi|227828255|ref|YP_002830035.1|	-	0.0026	17.7	0.0	0.0048	16.9	0.0	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
Peripla_BP_2	PF01497.18	gi|227828256|ref|YP_002830036.1|	-	3.3e-16	59.6	0.0	4.9e-16	59.0	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
HMGL-like	PF00682.19	gi|227828258|ref|YP_002830038.1|	-	1.4e-55	188.7	0.0	2.2e-55	188.1	0.0	1.3	1	0	0	1	1	1	1	HMGL-like
LeuA_dimer	PF08502.10	gi|227828258|ref|YP_002830038.1|	-	9.4e-23	80.6	0.1	2.2e-22	79.4	0.1	1.6	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
UbiA	PF01040.18	gi|227828259|ref|YP_002830039.1|	-	3e-38	131.6	21.1	3.6e-38	131.3	21.1	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Pyr_redox_2	PF07992.14	gi|227828260|ref|YP_002830040.1|	-	1.1e-13	51.1	0.1	6.7e-10	38.7	0.2	3.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227828260|ref|YP_002830040.1|	-	9e-07	29.4	0.1	0.034	14.7	0.1	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227828260|ref|YP_002830040.1|	-	0.0031	16.8	0.4	0.0054	16.0	0.4	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|227828260|ref|YP_002830040.1|	-	0.0041	15.9	0.3	2.2	6.9	0.0	2.3	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|227828260|ref|YP_002830040.1|	-	0.011	16.0	0.2	0.031	14.5	0.1	1.8	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.17	gi|227828260|ref|YP_002830040.1|	-	0.012	14.9	0.0	0.019	14.2	0.0	1.5	1	0	0	1	1	1	0	Thi4	family
GIDA	PF01134.22	gi|227828260|ref|YP_002830040.1|	-	0.059	12.5	4.6	3.3	6.7	0.3	2.8	2	1	1	3	3	3	0	Glucose	inhibited	division	protein	A
DAO	PF01266.24	gi|227828260|ref|YP_002830040.1|	-	0.15	11.7	0.5	0.28	10.7	0.3	1.6	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
tRNA_bind_2	PF13725.6	gi|227828261|ref|YP_002830041.1|	-	0.041	13.6	0.0	0.064	12.9	0.0	1.3	1	0	0	1	1	1	0	Possible	tRNA	binding	domain
Methyltr_RsmB-F	PF01189.17	gi|227828262|ref|YP_002830042.1|	-	3.6e-29	101.9	0.0	5.2e-29	101.3	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
MTS	PF05175.14	gi|227828262|ref|YP_002830042.1|	-	0.046	13.3	0.0	0.076	12.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
T2SSE	PF00437.20	gi|227828264|ref|YP_002830044.1|	-	2.5e-37	128.4	0.0	4.1e-37	127.7	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_23	PF13476.6	gi|227828264|ref|YP_002830044.1|	-	0.00098	19.7	0.2	0.0026	18.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|227828264|ref|YP_002830044.1|	-	0.0013	19.2	0.0	0.0039	17.7	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
AAA_29	PF13555.6	gi|227828264|ref|YP_002830044.1|	-	0.0054	16.4	0.0	0.011	15.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF87	PF01935.17	gi|227828264|ref|YP_002830044.1|	-	0.0063	16.6	0.3	0.083	13.0	0.1	2.3	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
Pox_A32	PF04665.12	gi|227828264|ref|YP_002830044.1|	-	0.0078	15.7	0.0	0.022	14.2	0.0	1.7	1	0	0	1	1	1	1	Poxvirus	A32	protein
cobW	PF02492.19	gi|227828264|ref|YP_002830044.1|	-	0.0089	15.6	0.0	0.018	14.6	0.0	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CSM2	PF16834.5	gi|227828264|ref|YP_002830044.1|	-	0.0094	15.6	0.4	0.019	14.6	0.4	1.5	1	0	0	1	1	1	1	Shu	complex	component	Csm2,	DNA-binding
AAA_21	PF13304.6	gi|227828264|ref|YP_002830044.1|	-	0.011	15.5	0.1	0.026	14.3	0.1	1.6	1	0	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|227828264|ref|YP_002830044.1|	-	0.012	16.1	0.0	0.022	15.1	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227828264|ref|YP_002830044.1|	-	0.017	15.4	0.0	0.044	14.1	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|227828264|ref|YP_002830044.1|	-	0.02	14.3	0.0	0.035	13.5	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Dynamin_N	PF00350.23	gi|227828264|ref|YP_002830044.1|	-	0.03	14.4	0.2	0.31	11.1	0.0	2.2	2	0	0	2	2	2	0	Dynamin	family
AAA_7	PF12775.7	gi|227828264|ref|YP_002830044.1|	-	0.053	13.0	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RsgA_GTPase	PF03193.16	gi|227828264|ref|YP_002830044.1|	-	0.057	13.3	0.1	0.23	11.4	0.0	2.0	3	0	0	3	3	3	0	RsgA	GTPase
Fructosamin_kin	PF03881.14	gi|227828264|ref|YP_002830044.1|	-	0.067	12.4	0.0	0.11	11.7	0.0	1.2	1	0	0	1	1	1	0	Fructosamine	kinase
NACHT	PF05729.12	gi|227828264|ref|YP_002830044.1|	-	0.089	12.7	0.1	0.2	11.6	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
TrwB_AAD_bind	PF10412.9	gi|227828264|ref|YP_002830044.1|	-	0.15	11.0	0.0	0.24	10.3	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_19	PF13245.6	gi|227828264|ref|YP_002830044.1|	-	0.21	11.9	0.0	0.44	10.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Dor1	PF04124.12	gi|227828265|ref|YP_002830045.1|	-	0.047	12.4	0.2	0.08	11.6	0.2	1.3	1	0	0	1	1	1	0	Dor1-like	family
Pilin_N	PF07790.11	gi|227828266|ref|YP_002830046.1|	-	0.0039	18.1	0.4	0.0063	17.4	0.3	1.4	1	1	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
CPP1-like	PF11833.8	gi|227828266|ref|YP_002830046.1|	-	0.067	12.9	0.5	0.09	12.4	0.5	1.2	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
HTH_45	PF14947.6	gi|227828268|ref|YP_002830048.1|	-	0.00021	21.2	0.0	0.00026	20.9	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF2250	PF10007.9	gi|227828268|ref|YP_002830048.1|	-	0.0095	16.0	0.0	0.68	10.1	0.0	2.1	1	1	1	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF505	PF04458.12	gi|227828268|ref|YP_002830048.1|	-	0.077	11.4	0.1	0.091	11.1	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF1495	PF07381.11	gi|227828268|ref|YP_002830048.1|	-	0.08	12.8	0.0	0.16	11.8	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HhH-GPD	PF00730.25	gi|227828269|ref|YP_002830049.1|	-	2.6e-20	72.9	0.0	3.6e-20	72.4	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|227828269|ref|YP_002830049.1|	-	0.0008	19.2	0.1	0.0022	17.8	0.1	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|227828269|ref|YP_002830049.1|	-	0.0015	19.1	0.5	0.15	12.7	0.0	2.4	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
EndIII_4Fe-2S	PF10576.9	gi|227828269|ref|YP_002830049.1|	-	0.51	10.8	9.0	0.91	9.9	9.0	1.5	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
ParBc	PF02195.18	gi|227828270|ref|YP_002830050.1|	-	1.7e-07	31.4	0.0	4.6e-07	30.0	0.0	1.7	2	0	0	2	2	2	1	ParB-like	nuclease	domain
DUF1015	PF06245.11	gi|227828270|ref|YP_002830050.1|	-	0.00084	18.3	0.1	0.23	10.3	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1015)
Glyco_trans_2_3	PF13632.6	gi|227828271|ref|YP_002830051.1|	-	1.6e-18	67.3	1.2	1.6e-18	67.3	1.2	2.0	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.26	gi|227828271|ref|YP_002830051.1|	-	2.6e-18	66.4	0.0	4.2e-18	65.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227828271|ref|YP_002830051.1|	-	9.4e-16	58.4	0.0	1.3e-15	57.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|227828271|ref|YP_002830051.1|	-	4.9e-12	45.7	0.1	2.5e-11	43.4	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	21
Cellulose_synt	PF03552.14	gi|227828271|ref|YP_002830051.1|	-	4.1e-05	22.3	1.2	7.1e-05	21.5	1.2	1.5	1	0	0	1	1	1	1	Cellulose	synthase
Glyco_tranf_2_2	PF10111.9	gi|227828271|ref|YP_002830051.1|	-	0.0049	16.4	0.0	0.0074	15.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Phage_holin_3_6	PF07332.11	gi|227828271|ref|YP_002830051.1|	-	3.4	7.7	8.1	4.7	7.3	0.6	2.5	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DEAD_assoc	PF08494.11	gi|227828272|ref|YP_002830052.1|	-	7.1e-57	192.3	0.1	1.6e-56	191.2	0.1	1.6	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|227828272|ref|YP_002830052.1|	-	2.7e-29	102.2	0.0	8.4e-28	97.3	0.0	2.9	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|227828272|ref|YP_002830052.1|	-	5.8e-16	58.8	0.2	2.1e-15	57.0	0.2	2.0	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|227828272|ref|YP_002830052.1|	-	5.9e-11	42.7	1.1	7.7e-09	35.8	0.0	3.3	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Transketolase_C	PF02780.20	gi|227828272|ref|YP_002830052.1|	-	1.2e-05	25.1	0.5	0.00015	21.6	0.0	2.9	4	0	0	4	4	4	1	Transketolase,	C-terminal	domain
AAA_19	PF13245.6	gi|227828272|ref|YP_002830052.1|	-	0.0093	16.3	0.1	3.9	7.8	0.0	3.1	2	1	0	2	2	2	1	AAA	domain
T2SSE	PF00437.20	gi|227828272|ref|YP_002830052.1|	-	0.041	12.9	0.1	0.15	11.1	0.0	1.9	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
RPAP1_N	PF08621.10	gi|227828272|ref|YP_002830052.1|	-	0.057	13.2	1.2	0.15	11.9	0.2	2.3	2	0	0	2	2	2	0	RPAP1-like,	N-terminal
Prok-JAB	PF14464.6	gi|227828273|ref|YP_002830053.1|	-	0.09	12.5	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Prokaryotic	homologs	of	the	JAB	domain
HrcA_DNA-bdg	PF03444.15	gi|227828274|ref|YP_002830054.1|	-	1.2e-35	121.0	1.2	2.2e-35	120.1	0.3	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
CBS	PF00571.28	gi|227828274|ref|YP_002830054.1|	-	1.6e-26	92.5	0.8	8e-14	51.8	0.3	2.7	2	0	0	2	2	2	2	CBS	domain
Rrf2	PF02082.20	gi|227828274|ref|YP_002830054.1|	-	2.8e-08	34.0	0.0	9.7e-08	32.3	0.0	2.0	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|227828274|ref|YP_002830054.1|	-	0.019	14.8	0.2	0.27	11.2	0.0	2.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|227828274|ref|YP_002830054.1|	-	0.022	14.6	0.0	0.048	13.5	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|227828274|ref|YP_002830054.1|	-	0.029	14.3	0.0	0.096	12.6	0.0	2.0	2	0	0	2	2	2	0	MarR	family
Sigma70_r4_2	PF08281.12	gi|227828274|ref|YP_002830054.1|	-	0.048	13.4	0.4	3.3	7.5	0.0	2.8	2	0	0	2	2	2	0	Sigma-70,	region	4
PRC	PF05239.16	gi|227828274|ref|YP_002830054.1|	-	0.087	12.9	5.2	15	5.7	0.1	3.9	4	0	0	4	4	4	0	PRC-barrel	domain
Penicillinase_R	PF03965.16	gi|227828274|ref|YP_002830054.1|	-	0.13	12.7	0.0	16	5.9	0.0	2.3	2	0	0	2	2	2	0	Penicillinase	repressor
DUF2192	PF09958.9	gi|227828275|ref|YP_002830055.1|	-	1.2e-79	267.1	7.9	1.3e-79	266.9	7.9	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2192)
Phasin	PF05597.11	gi|227828275|ref|YP_002830055.1|	-	0.048	13.7	0.0	0.087	12.8	0.0	1.3	1	0	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
PhoU	PF01895.19	gi|227828275|ref|YP_002830055.1|	-	0.13	12.8	1.7	0.44	11.1	0.4	2.3	1	1	1	2	2	2	0	PhoU	domain
FlaC_arch	PF05377.11	gi|227828276|ref|YP_002830056.1|	-	0.037	14.4	1.5	0.064	13.7	1.5	1.3	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DivIC	PF04977.15	gi|227828276|ref|YP_002830056.1|	-	0.068	13.0	1.1	0.098	12.4	1.1	1.2	1	0	0	1	1	1	0	Septum	formation	initiator
DUF4446	PF14584.6	gi|227828276|ref|YP_002830056.1|	-	0.1	12.6	0.7	0.14	12.1	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
HTH_3	PF01381.22	gi|227828277|ref|YP_002830057.1|	-	5.6e-10	39.1	0.1	1.9e-09	37.4	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix
HTH_11	PF08279.12	gi|227828277|ref|YP_002830057.1|	-	7.4e-05	22.6	1.0	0.00013	21.8	0.1	1.9	2	1	0	2	2	2	1	HTH	domain
HTH_23	PF13384.6	gi|227828277|ref|YP_002830057.1|	-	0.00032	20.4	0.0	0.0006	19.5	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Trp_repressor	PF01371.19	gi|227828277|ref|YP_002830057.1|	-	0.0013	18.8	0.4	0.011	15.8	0.0	2.3	1	1	2	3	3	3	1	Trp	repressor	protein
HTH_31	PF13560.6	gi|227828277|ref|YP_002830057.1|	-	0.0021	18.3	0.0	0.003	17.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|227828277|ref|YP_002830057.1|	-	0.003	17.4	0.0	0.0086	15.9	0.0	1.8	2	0	0	2	2	2	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
KORA	PF16509.5	gi|227828277|ref|YP_002830057.1|	-	0.0038	17.5	0.1	0.013	15.8	0.0	1.9	1	1	1	2	2	2	1	TrfB	plasmid	transcriptional	repressor
HTH_24	PF13412.6	gi|227828277|ref|YP_002830057.1|	-	0.0045	16.5	1.5	0.0073	15.8	0.0	2.2	2	2	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_10	PF04967.12	gi|227828277|ref|YP_002830057.1|	-	0.0071	16.1	0.2	0.03	14.1	0.0	2.1	2	1	0	2	2	2	1	HTH	DNA	binding	domain
HTH_19	PF12844.7	gi|227828277|ref|YP_002830057.1|	-	0.015	15.3	0.5	0.036	14.1	0.1	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|227828277|ref|YP_002830057.1|	-	0.023	14.6	0.0	0.046	13.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_5	PF01022.20	gi|227828277|ref|YP_002830057.1|	-	0.024	14.5	0.4	0.067	13.1	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.12	gi|227828277|ref|YP_002830057.1|	-	0.072	12.8	0.0	0.16	11.7	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
TTRAP	PF14203.6	gi|227828277|ref|YP_002830057.1|	-	0.49	10.4	5.6	0.33	11.0	3.1	1.9	1	1	1	2	2	2	0	Putative	tranposon-transfer	assisting	protein
ADH_N	PF08240.12	gi|227828278|ref|YP_002830058.1|	-	0.029	14.2	0.0	0.26	11.2	0.0	2.1	1	1	1	2	2	2	0	Alcohol	dehydrogenase	GroES-like	domain
Aminotran_1_2	PF00155.21	gi|227828279|ref|YP_002830059.1|	-	1.5e-40	139.5	0.0	1.7e-40	139.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|227828279|ref|YP_002830059.1|	-	4.2e-13	48.9	0.0	7.2e-13	48.1	0.0	1.3	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Beta_elim_lyase	PF01212.21	gi|227828279|ref|YP_002830059.1|	-	0.029	13.7	0.0	0.046	13.0	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|227828279|ref|YP_002830059.1|	-	0.13	11.5	0.0	0.22	10.8	0.0	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
MoCF_biosynth	PF00994.24	gi|227828280|ref|YP_002830060.1|	-	1.2e-31	109.3	0.0	1.9e-31	108.7	0.0	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MT	PF12777.7	gi|227828280|ref|YP_002830060.1|	-	0.02	13.9	0.1	0.032	13.3	0.1	1.2	1	0	0	1	1	1	0	Microtubule-binding	stalk	of	dynein	motor
DUF3888	PF13027.6	gi|227828280|ref|YP_002830060.1|	-	0.022	15.2	0.8	0.045	14.2	0.8	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3888)
Pallilysin	PF18663.1	gi|227828280|ref|YP_002830060.1|	-	0.1	12.6	0.8	1.2	9.1	0.1	2.7	3	0	0	3	3	3	0	Pallilysin	beta	barrel	domain
LytR_C	PF13399.6	gi|227828280|ref|YP_002830060.1|	-	0.12	13.3	0.0	0.23	12.5	0.0	1.4	1	0	0	1	1	1	0	LytR	cell	envelope-related	transcriptional	attenuator
Abhydrolase_1	PF00561.20	gi|227828281|ref|YP_002830061.1|	-	9.9e-25	87.6	0.0	3.7e-22	79.2	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|227828281|ref|YP_002830061.1|	-	6.2e-15	55.1	0.0	8.2e-15	54.7	0.0	1.1	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|227828281|ref|YP_002830061.1|	-	2.2e-14	54.6	0.0	3e-14	54.2	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Ndr	PF03096.14	gi|227828281|ref|YP_002830061.1|	-	0.00078	18.2	0.0	0.0011	17.8	0.0	1.3	1	0	0	1	1	1	1	Ndr	family
Abhydrolase_5	PF12695.7	gi|227828281|ref|YP_002830061.1|	-	0.0025	17.6	0.1	0.36	10.6	0.0	2.2	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
DUF1057	PF06342.12	gi|227828281|ref|YP_002830061.1|	-	0.012	14.6	0.1	1.8	7.5	0.0	2.5	2	1	1	3	3	3	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Thioesterase	PF00975.20	gi|227828281|ref|YP_002830061.1|	-	0.013	15.6	0.0	0.02	15.0	0.0	1.3	1	0	0	1	1	1	0	Thioesterase	domain
LIDHydrolase	PF10230.9	gi|227828281|ref|YP_002830061.1|	-	0.076	12.6	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	Lipid-droplet	associated	hydrolase
SSB	PF00436.25	gi|227828281|ref|YP_002830061.1|	-	0.11	12.6	0.0	0.25	11.4	0.0	1.6	2	0	0	2	2	2	0	Single-strand	binding	protein	family
tRNA_synthFbeta	PF17759.1	gi|227828282|ref|YP_002830062.1|	-	2.7e-39	134.8	0.0	4.5e-39	134.1	0.0	1.3	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|227828282|ref|YP_002830062.1|	-	4.4e-17	62.1	3.4	3.7e-15	56.0	0.7	3.2	3	0	0	3	3	3	2	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|227828282|ref|YP_002830062.1|	-	1.8e-12	47.2	0.2	5.7e-12	45.7	0.2	1.8	1	1	0	1	1	1	1	B3/4	domain
PhetRS_B1	PF18262.1	gi|227828282|ref|YP_002830062.1|	-	0.00013	22.1	4.5	0.0023	18.1	0.2	4.0	4	2	0	4	4	4	1	Phe-tRNA	synthetase	beta	subunit	B1	domain
tRNA-synt_2d	PF01409.20	gi|227828283|ref|YP_002830063.1|	-	3.6e-84	282.1	0.0	6.9e-84	281.2	0.0	1.5	1	1	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|227828283|ref|YP_002830063.1|	-	1.8e-08	34.1	0.0	5.2e-06	26.1	0.0	2.4	3	0	0	3	3	3	2	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
TrmB	PF01978.19	gi|227828283|ref|YP_002830063.1|	-	2.6e-06	27.2	6.7	5.5e-06	26.2	0.5	3.7	2	1	2	4	4	4	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|227828283|ref|YP_002830063.1|	-	0.00014	21.3	0.2	0.00046	19.7	0.2	2.0	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|227828283|ref|YP_002830063.1|	-	0.00026	21.4	0.4	0.0088	16.5	0.0	3.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
S10_plectin	PF03501.15	gi|227828283|ref|YP_002830063.1|	-	0.0023	17.9	0.1	0.025	14.7	0.0	2.6	2	1	1	3	3	3	1	Plectin/S10	domain
tRNA-synt_2	PF00152.20	gi|227828283|ref|YP_002830063.1|	-	0.0034	16.5	0.2	0.44	9.6	0.0	2.7	3	0	0	3	3	3	1	tRNA	synthetases	class	II	(D,	K	and	N)
Penicillinase_R	PF03965.16	gi|227828283|ref|YP_002830063.1|	-	0.0048	17.2	0.3	0.02	15.2	0.0	2.2	2	0	0	2	2	2	1	Penicillinase	repressor
MarR_2	PF12802.7	gi|227828283|ref|YP_002830063.1|	-	0.007	16.2	1.7	0.14	12.0	0.0	3.2	4	0	0	4	4	4	1	MarR	family
HTH_IclR	PF09339.10	gi|227828283|ref|YP_002830063.1|	-	0.012	15.4	0.0	0.032	14.0	0.0	1.8	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MRP-L28	PF09812.9	gi|227828283|ref|YP_002830063.1|	-	0.018	15.1	0.3	7.8	6.6	0.1	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L28
Rrf2	PF02082.20	gi|227828283|ref|YP_002830063.1|	-	0.053	13.9	1.1	0.28	11.6	0.0	2.6	3	0	0	3	3	2	0	Transcriptional	regulator
MarR	PF01047.22	gi|227828283|ref|YP_002830063.1|	-	0.092	12.7	0.1	0.45	10.5	0.1	2.2	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.14	gi|227828283|ref|YP_002830063.1|	-	0.17	11.9	0.1	0.17	11.9	0.1	2.9	4	0	0	4	4	4	0	Transcriptional	regulator	PadR-like	family
DUF2250	PF10007.9	gi|227828283|ref|YP_002830063.1|	-	0.79	9.9	7.0	4.4	7.5	0.8	3.5	2	2	1	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Lactamase_B_2	PF12706.7	gi|227828284|ref|YP_002830064.1|	-	8.7e-19	67.8	0.0	1.1e-18	67.5	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|227828284|ref|YP_002830064.1|	-	9.4e-19	67.9	0.1	1.3e-18	67.5	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|227828284|ref|YP_002830064.1|	-	4.2e-09	36.7	0.2	5.7e-09	36.3	0.2	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Gln_deamidase_2	PF18626.1	gi|227828284|ref|YP_002830064.1|	-	0.14	12.4	0.0	0.25	11.6	0.0	1.4	1	0	0	1	1	1	0	Glutaminase
Peptidase_M24	PF00557.24	gi|227828285|ref|YP_002830065.1|	-	2e-35	122.4	0.0	2.4e-35	122.1	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
DUF1512	PF07431.12	gi|227828286|ref|YP_002830066.1|	-	1.9e-147	490.9	7.5	2.2e-147	490.7	7.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
N6_N4_Mtase	PF01555.18	gi|227828286|ref|YP_002830066.1|	-	0.13	11.9	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	DNA	methylase
DUF4465	PF14717.6	gi|227828287|ref|YP_002830067.1|	-	0.081	13.3	0.0	0.081	13.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4465)
HD	PF01966.22	gi|227828288|ref|YP_002830068.1|	-	1.9e-08	34.5	0.0	4.2e-08	33.4	0.0	1.6	1	0	0	1	1	1	1	HD	domain
Hydrolase_3	PF08282.12	gi|227828289|ref|YP_002830069.1|	-	3.7e-33	115.3	1.7	1e-19	71.3	0.7	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|227828289|ref|YP_002830069.1|	-	1.9e-09	37.4	0.7	9.2e-05	22.1	0.1	3.0	2	1	1	3	3	3	3	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase	PF00702.26	gi|227828289|ref|YP_002830069.1|	-	6.3e-07	29.9	2.0	0.081	13.2	0.0	3.2	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|227828289|ref|YP_002830069.1|	-	1.1e-05	25.7	2.9	0.002	18.3	0.0	3.4	2	2	1	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|227828289|ref|YP_002830069.1|	-	0.00016	22.1	1.8	0.84	10.0	0.0	3.2	2	1	1	3	3	3	1	haloacid	dehalogenase-like	hydrolase
Flagellin_IN	PF07196.13	gi|227828289|ref|YP_002830069.1|	-	0.0093	16.1	0.2	0.019	15.1	0.2	1.5	1	0	0	1	1	1	1	Flagellin	hook	IN	motif
Hydrolase_6	PF13344.6	gi|227828289|ref|YP_002830069.1|	-	0.032	14.3	0.1	0.88	9.7	0.0	2.6	2	1	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|227828289|ref|YP_002830069.1|	-	0.068	13.2	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	HAD-hyrolase-like
DUF3944	PF13099.6	gi|227828289|ref|YP_002830069.1|	-	0.081	12.8	0.5	0.18	11.7	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3944)
tRNA-synt_1c	PF00749.21	gi|227828290|ref|YP_002830070.1|	-	5.1e-80	268.7	0.8	8.3e-80	268.0	0.0	1.8	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|227828290|ref|YP_002830070.1|	-	2.1e-23	83.1	1.4	4.5e-23	82.0	1.4	1.6	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
Ribosomal_L21p	PF00829.21	gi|227828290|ref|YP_002830070.1|	-	0.003	17.8	1.3	0.0069	16.6	1.3	1.6	1	0	0	1	1	1	1	Ribosomal	prokaryotic	L21	protein
Atg8	PF02991.16	gi|227828290|ref|YP_002830070.1|	-	0.051	13.8	0.3	0.19	12.0	0.3	2.0	1	0	0	1	1	1	0	Autophagy	protein	Atg8	ubiquitin	like
DUF4635	PF15466.6	gi|227828290|ref|YP_002830070.1|	-	6.3	6.3	9.6	19	4.8	0.1	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4635)
Ribosomal_L7Ae	PF01248.26	gi|227828291|ref|YP_002830071.1|	-	6.8e-34	115.5	2.1	8.3e-34	115.2	2.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|227828291|ref|YP_002830071.1|	-	2.5e-05	24.1	0.1	3.7e-05	23.5	0.1	1.3	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
RNase_P_pop3	PF08228.11	gi|227828291|ref|YP_002830071.1|	-	0.0049	16.9	0.0	0.0054	16.8	0.0	1.1	1	0	0	1	1	1	1	RNase	P	subunit	Pop3
DbpA	PF03880.15	gi|227828291|ref|YP_002830071.1|	-	0.034	14.1	1.0	0.27	11.2	0.1	2.6	2	1	1	3	3	3	0	DbpA	RNA	binding	domain
tRNA-synt_2	PF00152.20	gi|227828292|ref|YP_002830072.1|	-	2e-85	286.7	0.2	2.5e-85	286.4	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|227828292|ref|YP_002830072.1|	-	3.6e-11	42.9	0.1	7.4e-11	41.9	0.1	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|227828292|ref|YP_002830072.1|	-	4.9e-08	32.7	0.2	4.1e-05	23.2	0.0	3.1	3	0	0	3	3	3	2	tRNA	synthetases	class	II	core	domain	(F)
LEM	PF03020.15	gi|227828292|ref|YP_002830072.1|	-	0.015	14.9	0.1	0.07	12.7	0.0	2.2	2	0	0	2	2	2	0	LEM	domain
SAP	PF02037.27	gi|227828292|ref|YP_002830072.1|	-	0.033	13.9	0.5	0.98	9.2	0.0	3.0	3	0	0	3	3	3	0	SAP	domain
Peptidase_M50	PF02163.22	gi|227828293|ref|YP_002830073.1|	-	5.4e-20	71.7	5.7	1.7e-19	70.1	5.7	1.8	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|227828293|ref|YP_002830073.1|	-	3.8e-09	36.8	0.0	7.3e-09	35.8	0.0	1.5	1	0	0	1	1	1	1	PDZ	domain
PDZ	PF00595.24	gi|227828293|ref|YP_002830073.1|	-	6.7e-06	26.4	0.0	1.5e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|227828293|ref|YP_002830073.1|	-	5.8e-05	22.9	0.0	0.00011	22.0	0.0	1.4	1	0	0	1	1	1	1	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|227828293|ref|YP_002830073.1|	-	0.063	13.2	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Tricorn	protease	PDZ	domain
DUF4730	PF15873.5	gi|227828293|ref|YP_002830073.1|	-	0.61	10.4	4.5	7.2	7.0	0.0	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4730)
NTP_transf_2	PF01909.23	gi|227828294|ref|YP_002830074.1|	-	3.4e-06	27.2	0.1	7e-06	26.3	0.1	1.7	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|227828294|ref|YP_002830074.1|	-	2.2e-05	24.5	0.0	4.6e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DUF1122	PF06557.11	gi|227828295|ref|YP_002830075.1|	-	3.8e-54	182.8	0.7	4.9e-54	182.4	0.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1122)
DUF3271	PF11675.8	gi|227828295|ref|YP_002830075.1|	-	0.02	14.1	0.3	0.029	13.6	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3271)
CMAS	PF02353.20	gi|227828295|ref|YP_002830075.1|	-	0.16	11.3	0.0	0.18	11.1	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Radical_SAM	PF04055.21	gi|227828296|ref|YP_002830076.1|	-	1.1e-08	35.6	0.4	1.3e-06	29.0	0.0	2.8	3	1	1	4	4	4	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|227828296|ref|YP_002830076.1|	-	2.1e-07	31.1	0.0	5.5e-07	29.7	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|227828296|ref|YP_002830076.1|	-	4.3e-06	27.0	0.1	3.2e-05	24.2	0.0	2.3	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
eRF1_1	PF03463.15	gi|227828297|ref|YP_002830077.1|	-	1.5e-22	80.0	0.4	3.4e-22	78.8	0.4	1.6	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|227828297|ref|YP_002830077.1|	-	2.9e-22	79.3	0.8	1e-21	77.5	0.2	2.1	2	0	0	2	2	2	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|227828297|ref|YP_002830077.1|	-	9.3e-05	22.7	0.1	0.00019	21.8	0.1	1.5	1	0	0	1	1	1	1	eRF1	domain	2
baeRF_family2	PF18844.1	gi|227828297|ref|YP_002830077.1|	-	0.00073	19.6	0.0	0.0013	18.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	2
Resolvase	PF00239.21	gi|227828297|ref|YP_002830077.1|	-	0.014	15.5	0.1	0.19	11.9	0.0	2.4	2	0	0	2	2	2	0	Resolvase,	N	terminal	domain
EutQ	PF06249.12	gi|227828297|ref|YP_002830077.1|	-	0.023	14.4	0.3	1.3	8.8	0.0	2.7	2	1	1	3	3	3	0	Ethanolamine	utilisation	protein	EutQ
YqgF	PF14639.6	gi|227828297|ref|YP_002830077.1|	-	0.076	12.8	0.1	0.84	9.4	0.1	2.4	1	1	0	1	1	1	0	Holliday-junction	resolvase-like	of	SPT6
Acetyltransf_1	PF00583.25	gi|227828298|ref|YP_002830078.1|	-	5.2e-23	81.5	0.1	7e-23	81.1	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|227828298|ref|YP_002830078.1|	-	1.6e-15	57.1	0.1	1.7e-15	57.1	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|227828298|ref|YP_002830078.1|	-	1.3e-14	54.4	0.7	2.3e-14	53.6	0.7	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|227828298|ref|YP_002830078.1|	-	6.1e-07	29.7	1.6	7.8e-07	29.4	1.6	1.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|227828298|ref|YP_002830078.1|	-	2.4e-06	27.7	0.0	5.7e-05	23.2	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|227828298|ref|YP_002830078.1|	-	8e-06	25.7	0.0	1.4e-05	25.0	0.0	1.5	1	1	0	1	1	1	1	FR47-like	protein
GNAT_acetyltr_2	PF13718.6	gi|227828298|ref|YP_002830078.1|	-	0.00062	19.2	0.1	0.022	14.2	0.0	2.1	1	1	1	2	2	2	1	GNAT	acetyltransferase	2
Acetyltransf_3	PF13302.7	gi|227828298|ref|YP_002830078.1|	-	0.034	14.8	0.0	0.047	14.4	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|227828298|ref|YP_002830078.1|	-	0.042	14.0	0.0	0.072	13.2	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.6	gi|227828298|ref|YP_002830078.1|	-	0.057	13.4	0.0	0.092	12.7	0.0	1.3	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
DNA_pol_B_exo1	PF03104.19	gi|227828299|ref|YP_002830079.1|	-	1.1e-43	149.7	7.2	1.1e-43	149.7	3.7	2.6	2	1	0	2	2	2	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B	PF00136.21	gi|227828299|ref|YP_002830079.1|	-	1.1e-20	73.9	1.3	5.9e-13	48.3	0.3	2.6	2	1	1	3	3	3	2	DNA	polymerase	family	B
Toprim_4	PF13662.6	gi|227828300|ref|YP_002830080.1|	-	1.5e-10	41.4	0.1	5.4e-10	39.6	0.1	2.0	1	0	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.6	gi|227828300|ref|YP_002830080.1|	-	2.2e-05	24.8	0.0	0.0003	21.2	0.0	2.4	2	0	0	2	2	2	1	Toprim-like
Toprim	PF01751.22	gi|227828300|ref|YP_002830080.1|	-	0.00013	22.1	2.1	0.00022	21.4	0.1	2.4	2	2	1	3	3	3	1	Toprim	domain
HHH_3	PF12836.7	gi|227828300|ref|YP_002830080.1|	-	0.23	11.7	4.3	0.35	11.2	0.1	2.9	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
tRNA-synt_1b	PF00579.25	gi|227828301|ref|YP_002830081.1|	-	2.9e-49	168.0	0.3	2.9e-35	122.0	0.1	2.1	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
AIRS	PF00586.24	gi|227828303|ref|YP_002830083.1|	-	1.6e-07	31.8	0.1	3.6e-07	30.8	0.1	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|227828303|ref|YP_002830083.1|	-	4.6e-06	26.8	0.0	1.1e-05	25.7	0.0	1.6	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
HrpF	PF06266.12	gi|227828303|ref|YP_002830083.1|	-	0.042	14.1	0.0	0.23	11.8	0.0	2.2	2	0	0	2	2	2	0	HrpF	protein
CbiC	PF02570.15	gi|227828303|ref|YP_002830083.1|	-	0.17	11.6	0.1	0.28	10.8	0.1	1.3	1	0	0	1	1	1	0	Precorrin-8X	methylmutase
Ribosomal_S13	PF00416.22	gi|227828304|ref|YP_002830084.1|	-	3e-45	153.7	0.0	3.7e-45	153.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
HHH_4	PF14490.6	gi|227828304|ref|YP_002830084.1|	-	0.01	15.8	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	0	Helix-hairpin-helix	containing	domain
S4	PF01479.25	gi|227828305|ref|YP_002830085.1|	-	8.1e-18	63.9	0.1	1.7e-17	62.8	0.1	1.6	1	0	0	1	1	1	1	S4	domain
Ribosomal_S4	PF00163.19	gi|227828305|ref|YP_002830085.1|	-	0.00015	22.6	0.7	0.0003	21.6	0.3	1.7	1	1	1	2	2	2	1	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S11	PF00411.19	gi|227828306|ref|YP_002830086.1|	-	8.1e-49	164.6	1.2	1e-48	164.3	1.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
RNA_pol_A_bac	PF01000.26	gi|227828307|ref|YP_002830087.1|	-	5.5e-28	97.6	0.0	1.1e-27	96.6	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|227828307|ref|YP_002830087.1|	-	1e-11	44.1	0.0	1.3e-11	43.7	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Fer4_9	PF13187.6	gi|227828307|ref|YP_002830087.1|	-	9.9e-05	22.4	7.6	0.0029	17.7	2.8	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|227828307|ref|YP_002830087.1|	-	0.018	15.2	2.8	0.3	11.3	0.6	2.2	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828307|ref|YP_002830087.1|	-	1.4	9.0	12.3	3.2	7.9	1.6	2.6	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828307|ref|YP_002830087.1|	-	1.8	9.2	10.8	27	5.4	1.5	3.1	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828307|ref|YP_002830087.1|	-	4.5	7.9	11.4	20	5.8	0.1	2.9	2	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Ribosomal_L18	PF17135.4	gi|227828308|ref|YP_002830088.1|	-	3.4e-07	29.8	0.1	3.7e-07	29.7	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|227828308|ref|YP_002830088.1|	-	4.3e-07	30.6	0.4	1.3e-06	29.1	0.4	1.8	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L13	PF00572.18	gi|227828309|ref|YP_002830089.1|	-	5.6e-12	46.0	1.1	5.2e-10	39.6	1.1	2.3	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_S9	PF00380.19	gi|227828310|ref|YP_002830090.1|	-	3.3e-27	95.4	0.1	3.7e-27	95.2	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
PcrB	PF01884.17	gi|227828310|ref|YP_002830090.1|	-	0.17	11.3	0.0	0.22	11.0	0.0	1.2	1	0	0	1	1	1	0	PcrB	family
RNA_pol_N	PF01194.17	gi|227828311|ref|YP_002830091.1|	-	2.6e-30	104.5	0.3	2.9e-30	104.3	0.3	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Chordopox_RPO7	PF05864.12	gi|227828311|ref|YP_002830091.1|	-	0.055	13.7	0.2	0.095	13.0	0.2	1.4	1	1	0	1	1	1	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
Ribosomal_S2	PF00318.20	gi|227828312|ref|YP_002830092.1|	-	2.4e-25	89.1	0.0	5.6e-15	55.1	0.1	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
Memo	PF01875.17	gi|227828313|ref|YP_002830093.1|	-	5.1e-98	327.5	0.1	5.7e-98	327.4	0.1	1.0	1	0	0	1	1	1	1	Memo-like	protein
AA_kinase	PF00696.28	gi|227828315|ref|YP_002830095.1|	-	5.8e-23	81.7	0.0	8.6e-23	81.2	0.0	1.2	1	0	0	1	1	1	1	Amino	acid	kinase	family
FMN_dh	PF01070.18	gi|227828316|ref|YP_002830096.1|	-	1.4e-23	83.6	0.0	1.7e-20	73.3	0.0	2.1	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|227828316|ref|YP_002830096.1|	-	3.1e-05	23.2	0.7	0.096	11.7	0.3	3.2	3	1	1	4	4	4	2	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.17	gi|227828316|ref|YP_002830096.1|	-	0.015	14.5	0.1	0.032	13.4	0.1	1.5	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.21	gi|227828316|ref|YP_002830096.1|	-	0.092	11.9	0.8	0.53	9.4	0.1	2.4	2	1	0	2	2	2	0	Dihydroorotate	dehydrogenase
polyprenyl_synt	PF00348.17	gi|227828317|ref|YP_002830097.1|	-	1.2e-72	244.1	0.1	1.4e-72	243.8	0.1	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
CPL	PF08144.11	gi|227828317|ref|YP_002830097.1|	-	0.077	13.3	0.5	0.2	12.0	0.5	1.7	1	0	0	1	1	1	0	CPL	(NUC119)	domain
UPF0239	PF06783.11	gi|227828317|ref|YP_002830097.1|	-	0.11	12.7	0.1	0.23	11.7	0.1	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0239)
Glycos_transf_4	PF00953.21	gi|227828318|ref|YP_002830098.1|	-	5.9e-34	117.4	18.2	5.9e-34	117.4	18.2	2.0	3	0	0	3	3	3	1	Glycosyl	transferase	family	4
MNSV_P7B	PF06692.11	gi|227828318|ref|YP_002830098.1|	-	8.6	6.4	8.5	12	5.9	3.7	2.7	2	0	0	2	2	2	0	Melon	necrotic	spot	virus	P7B	protein
PaREP1	PF05942.11	gi|227828319|ref|YP_002830099.1|	-	0.0068	16.3	0.1	0.017	15.1	0.0	1.7	1	1	1	2	2	2	1	Archaeal	PaREP1/PaREP8	family
VASP_tetra	PF08776.11	gi|227828319|ref|YP_002830099.1|	-	0.017	14.7	0.8	0.12	11.9	0.0	2.6	2	0	0	2	2	2	0	VASP	tetramerisation	domain
DUF1614	PF07758.11	gi|227828320|ref|YP_002830100.1|	-	3.1e-47	160.8	12.8	3.1e-47	160.8	12.8	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1614)
K1	PF02960.14	gi|227828320|ref|YP_002830100.1|	-	0.37	10.9	4.7	1.4	9.0	0.1	2.9	1	1	2	3	3	3	0	K1	glycoprotein
NTP_transf_3	PF12804.7	gi|227828321|ref|YP_002830101.1|	-	2.5e-12	47.4	0.0	4.8e-12	46.5	0.0	1.4	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|227828321|ref|YP_002830101.1|	-	0.0074	16.0	0.0	0.0098	15.7	0.0	1.1	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|227828321|ref|YP_002830101.1|	-	0.076	12.9	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Cytidylyltransferase
NTP_transferase	PF00483.23	gi|227828321|ref|YP_002830101.1|	-	0.078	12.5	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	Nucleotidyl	transferase
AIRS	PF00586.24	gi|227828322|ref|YP_002830102.1|	-	1.9e-13	50.9	0.3	4.1e-13	49.8	0.3	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|227828322|ref|YP_002830102.1|	-	3.8e-13	49.9	0.2	6.4e-13	49.1	0.2	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
ABC_tran	PF00005.27	gi|227828323|ref|YP_002830103.1|	-	4.8e-29	101.6	0.0	8.1e-29	100.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828323|ref|YP_002830103.1|	-	6.6e-15	55.7	0.0	7.2e-10	39.2	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|227828323|ref|YP_002830103.1|	-	3.9e-07	30.1	0.0	0.00033	20.5	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|227828323|ref|YP_002830103.1|	-	0.00012	21.6	0.1	0.15	11.5	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|227828323|ref|YP_002830103.1|	-	0.011	15.6	0.0	0.021	14.7	0.0	1.6	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|227828323|ref|YP_002830103.1|	-	0.022	15.3	3.1	0.071	13.6	3.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|227828323|ref|YP_002830103.1|	-	0.038	13.7	0.0	0.11	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|227828323|ref|YP_002830103.1|	-	0.047	13.4	0.0	0.14	11.9	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|227828323|ref|YP_002830103.1|	-	0.055	13.9	0.6	0.33	11.4	0.6	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|227828323|ref|YP_002830103.1|	-	0.063	13.0	0.2	4	7.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|227828323|ref|YP_002830103.1|	-	0.07	12.7	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_5	PF07728.14	gi|227828323|ref|YP_002830103.1|	-	0.13	12.3	0.0	3.6	7.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|227828323|ref|YP_002830103.1|	-	0.15	12.3	0.5	1.9	8.8	0.6	2.6	1	1	0	1	1	1	0	AAA	domain
ABC2_membrane	PF01061.24	gi|227828324|ref|YP_002830104.1|	-	4.4e-12	45.9	34.7	2.8e-10	40.0	20.9	2.7	2	1	1	3	3	3	2	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|227828324|ref|YP_002830104.1|	-	4.8e-12	45.6	41.7	8.9e-12	44.8	41.7	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
FA_desaturase	PF00487.24	gi|227828324|ref|YP_002830104.1|	-	1.5	8.6	4.5	16	5.3	0.7	2.4	2	0	0	2	2	2	0	Fatty	acid	desaturase
ECH_1	PF00378.20	gi|227828325|ref|YP_002830105.1|	-	1.9e-27	96.2	0.0	2.2e-27	96.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|227828325|ref|YP_002830105.1|	-	2.8e-13	50.1	0.0	3.6e-13	49.7	0.0	1.1	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
DUF4822	PF16103.5	gi|227828325|ref|YP_002830105.1|	-	0.063	13.5	0.9	0.19	12.0	0.9	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4822)
PadR	PF03551.14	gi|227828326|ref|YP_002830106.1|	-	4.5e-19	68.2	0.1	9.5e-19	67.1	0.0	1.6	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
RTP	PF02334.16	gi|227828326|ref|YP_002830106.1|	-	4.2e-05	24.2	0.2	0.00016	22.3	0.0	1.9	1	1	1	2	2	2	1	Replication	terminator	protein
DUF4364	PF14277.6	gi|227828326|ref|YP_002830106.1|	-	5.7e-05	22.9	0.1	0.0001	22.1	0.1	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF505	PF04458.12	gi|227828326|ref|YP_002830106.1|	-	0.00064	18.2	0.1	0.0014	17.1	0.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_42	PF06224.12	gi|227828326|ref|YP_002830106.1|	-	0.011	15.4	0.0	0.012	15.2	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|227828326|ref|YP_002830106.1|	-	0.015	15.2	0.1	0.061	13.2	0.0	2.0	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
TBPIP	PF07106.13	gi|227828326|ref|YP_002830106.1|	-	0.018	15.0	0.2	4	7.4	0.4	2.7	2	1	1	3	3	3	0	TBPIP/Hop2	winged	helix	domain
FUR	PF01475.19	gi|227828326|ref|YP_002830106.1|	-	0.037	14.2	0.0	0.049	13.8	0.0	1.4	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
Stork_head	PF10264.9	gi|227828326|ref|YP_002830106.1|	-	0.057	13.6	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	Storkhead-box1	domain
HTH_5	PF01022.20	gi|227828326|ref|YP_002830106.1|	-	0.058	13.3	0.0	1.1	9.2	0.0	2.6	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|227828326|ref|YP_002830106.1|	-	0.072	13.0	0.3	0.51	10.3	0.0	2.5	2	2	1	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|227828327|ref|YP_002830107.1|	-	3.8e-15	55.5	0.1	5.5e-15	55.0	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|227828327|ref|YP_002830107.1|	-	2.7e-06	27.1	0.6	6.6e-06	25.9	0.2	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|227828327|ref|YP_002830107.1|	-	5.6e-06	26.2	0.0	9.4e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|227828327|ref|YP_002830107.1|	-	3e-05	23.9	0.1	5.2e-05	23.1	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|227828327|ref|YP_002830107.1|	-	0.00032	20.7	0.2	0.00078	19.5	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|227828327|ref|YP_002830107.1|	-	0.00054	19.8	0.1	0.00076	19.3	0.1	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|227828327|ref|YP_002830107.1|	-	0.0018	18.8	0.1	0.0027	18.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|227828327|ref|YP_002830107.1|	-	0.0076	16.4	0.1	0.014	15.6	0.1	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.6	gi|227828327|ref|YP_002830107.1|	-	0.014	15.1	0.4	0.021	14.5	0.1	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_24	PF13412.6	gi|227828327|ref|YP_002830107.1|	-	0.024	14.2	0.1	0.068	12.7	0.1	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|227828327|ref|YP_002830107.1|	-	0.043	13.8	0.4	0.1	12.5	0.4	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
RP-C	PF03428.13	gi|227828327|ref|YP_002830107.1|	-	0.064	12.9	0.1	0.099	12.3	0.0	1.4	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
HxlR	PF01638.17	gi|227828327|ref|YP_002830107.1|	-	0.1	12.4	0.1	0.15	12.0	0.1	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF2250	PF10007.9	gi|227828327|ref|YP_002830107.1|	-	0.13	12.4	0.2	0.22	11.6	0.1	1.5	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GntR	PF00392.21	gi|227828327|ref|YP_002830107.1|	-	0.14	11.8	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MazE_antitoxin	PF04014.18	gi|227828328|ref|YP_002830108.1|	-	1e-10	41.3	0.1	1e-10	41.3	0.1	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
eIF-1a	PF01176.19	gi|227828328|ref|YP_002830108.1|	-	0.00029	20.6	0.1	0.00037	20.2	0.1	1.3	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
PrlF_antitoxin	PF15937.5	gi|227828328|ref|YP_002830108.1|	-	0.00044	20.6	0.1	0.00048	20.5	0.1	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
RNA_pol_Rpb5_C	PF01191.19	gi|227828328|ref|YP_002830108.1|	-	0.084	12.7	0.4	0.27	11.1	0.4	1.9	1	1	0	1	1	1	0	RNA	polymerase	Rpb5,	C-terminal	domain
DUF1905	PF08922.11	gi|227828328|ref|YP_002830108.1|	-	0.097	12.7	0.1	0.12	12.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
TatD_DNase	PF01026.21	gi|227828329|ref|YP_002830109.1|	-	5.9e-53	179.8	0.0	6.9e-53	179.6	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
ATP-synt_I	PF03899.15	gi|227828330|ref|YP_002830110.1|	-	0.0068	16.8	2.4	0.0087	16.4	2.4	1.1	1	0	0	1	1	1	1	ATP	synthase	I	chain
NADH-u_ox-rdase	PF10785.9	gi|227828330|ref|YP_002830110.1|	-	0.11	13.2	1.4	0.14	12.9	1.4	1.1	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase	complex	I,	21	kDa	subunit
COX1	PF00115.20	gi|227828332|ref|YP_002830112.1|	-	4.1e-71	240.1	68.6	4.1e-71	240.1	68.6	2.4	1	1	2	3	3	3	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF2976	PF11190.8	gi|227828332|ref|YP_002830112.1|	-	0.095	12.5	0.1	0.095	12.5	0.1	3.8	4	1	1	5	5	5	0	Protein	of	unknown	function	(DUF2976)
ThiP_synth	PF10120.9	gi|227828333|ref|YP_002830113.1|	-	5e-52	175.8	0.0	5.7e-52	175.7	0.0	1.0	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
Med15_fungi	PF05397.12	gi|227828333|ref|YP_002830113.1|	-	0.024	14.9	0.0	0.32	11.3	0.0	2.3	2	0	0	2	2	2	0	Mediator	complex	subunit	15
QIL1	PF15884.5	gi|227828333|ref|YP_002830113.1|	-	0.15	12.6	0.1	0.29	11.8	0.1	1.5	1	0	0	1	1	1	0	MICOS	complex	subunit	MIC13,	QIL1
PadR	PF03551.14	gi|227828334|ref|YP_002830114.1|	-	4.6e-17	61.7	0.3	1e-16	60.6	0.1	1.7	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|227828334|ref|YP_002830114.1|	-	1.3e-05	24.9	1.0	0.0036	17.2	0.6	3.0	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
RTP	PF02334.16	gi|227828334|ref|YP_002830114.1|	-	8.3e-05	23.2	2.9	0.0001	22.9	1.5	1.8	1	1	1	2	2	2	1	Replication	terminator	protein
DUF4364	PF14277.6	gi|227828334|ref|YP_002830114.1|	-	0.00026	20.8	1.6	0.00071	19.4	0.2	2.1	1	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.6	gi|227828334|ref|YP_002830114.1|	-	0.00045	20.2	1.2	0.00097	19.1	0.4	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix
DUF505	PF04458.12	gi|227828334|ref|YP_002830114.1|	-	0.0031	15.9	0.3	0.0044	15.5	0.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
DUF1495	PF07381.11	gi|227828334|ref|YP_002830114.1|	-	0.0031	17.3	1.3	0.018	14.8	0.2	2.4	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain	(DUF1495)
Penicillinase_R	PF03965.16	gi|227828334|ref|YP_002830114.1|	-	0.019	15.3	0.1	0.056	13.8	0.1	2.0	1	1	0	1	1	1	0	Penicillinase	repressor
HTH_27	PF13463.6	gi|227828334|ref|YP_002830114.1|	-	0.047	14.2	0.0	0.12	12.8	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Stork_head	PF10264.9	gi|227828334|ref|YP_002830114.1|	-	0.11	12.7	0.0	0.57	10.4	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	Storkhead-box1	domain
AAA_31	PF13614.6	gi|227828338|ref|YP_002830118.1|	-	5e-30	104.7	0.4	1.2e-29	103.4	0.4	1.6	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|227828338|ref|YP_002830118.1|	-	3.8e-12	46.4	0.1	4.6e-12	46.1	0.1	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|227828338|ref|YP_002830118.1|	-	1.6e-11	44.2	2.9	3.6e-10	39.7	2.9	2.1	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|227828338|ref|YP_002830118.1|	-	5.3e-11	42.3	0.0	6.5e-11	42.0	0.0	1.1	1	0	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|227828338|ref|YP_002830118.1|	-	1.4e-06	27.7	0.6	0.00015	21.0	0.1	2.4	1	1	1	2	2	2	2	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|227828338|ref|YP_002830118.1|	-	0.00069	19.2	0.0	0.11	12.0	0.0	2.1	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|227828338|ref|YP_002830118.1|	-	0.035	13.5	0.1	0.09	12.2	0.1	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SRP54	PF00448.22	gi|227828338|ref|YP_002830118.1|	-	0.18	11.4	0.2	0.74	9.4	0.1	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|227828338|ref|YP_002830118.1|	-	0.2	11.2	0.1	3.1	7.3	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
VirC1	PF07015.11	gi|227828338|ref|YP_002830118.1|	-	0.21	10.9	0.0	0.35	10.1	0.0	1.3	1	0	0	1	1	1	0	VirC1	protein
DIM	PF08194.12	gi|227828339|ref|YP_002830119.1|	-	1.9	8.8	5.2	4.1	7.7	5.2	1.5	1	0	0	1	1	1	0	DIM	protein
CN_hydrolase	PF00795.22	gi|227828341|ref|YP_002830121.1|	-	4.6e-14	52.4	0.0	2.2e-13	50.2	0.0	1.9	1	1	0	1	1	1	1	Carbon-nitrogen	hydrolase
CBS	PF00571.28	gi|227828342|ref|YP_002830122.1|	-	1.3e-33	115.2	3.7	6.8e-08	32.8	0.0	4.4	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.19	gi|227828342|ref|YP_002830122.1|	-	0.00013	22.7	1.7	0.00044	21.0	1.7	1.9	1	0	0	1	1	1	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
Hist_deacetyl	PF00850.19	gi|227828343|ref|YP_002830123.1|	-	5.2e-75	252.8	0.0	6.7e-75	252.4	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
ATP-grasp	PF02222.22	gi|227828344|ref|YP_002830124.1|	-	6.1e-43	146.3	0.0	1.2e-42	145.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|227828344|ref|YP_002830124.1|	-	1.2e-09	38.0	0.0	2.2e-09	37.1	0.0	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.13	gi|227828344|ref|YP_002830124.1|	-	7.3e-09	35.4	0.4	1.5e-08	34.5	0.1	1.6	2	0	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|227828344|ref|YP_002830124.1|	-	3.1e-07	30.6	0.1	5.2e-07	29.8	0.1	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|227828344|ref|YP_002830124.1|	-	0.00049	19.9	0.0	0.0012	18.7	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
2-Hacid_dh_C	PF02826.19	gi|227828344|ref|YP_002830124.1|	-	0.0018	17.6	0.0	0.0034	16.8	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|227828344|ref|YP_002830124.1|	-	0.0056	15.8	0.0	0.0086	15.2	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
PurK_C	PF17769.1	gi|227828344|ref|YP_002830124.1|	-	0.0097	15.6	0.0	0.021	14.5	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
ATP-grasp_4	PF13535.6	gi|227828344|ref|YP_002830124.1|	-	0.012	15.2	0.1	0.04	13.5	0.1	2.0	1	0	0	1	1	1	0	ATP-grasp	domain
LAL_C2	PF18603.1	gi|227828344|ref|YP_002830124.1|	-	0.017	15.2	0.0	0.067	13.4	0.0	2.0	1	0	0	1	1	1	0	L-amino	acid	ligase	C-terminal	domain	2
Pyr_redox	PF00070.27	gi|227828344|ref|YP_002830124.1|	-	0.029	14.9	1.2	0.64	10.6	0.1	3.2	2	1	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|227828344|ref|YP_002830124.1|	-	0.038	13.9	0.1	0.072	13.0	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|227828344|ref|YP_002830124.1|	-	0.039	13.4	0.0	0.06	12.8	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Pyr_redox_2	PF07992.14	gi|227828344|ref|YP_002830124.1|	-	0.045	13.0	0.2	0.26	10.5	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.15	gi|227828344|ref|YP_002830124.1|	-	0.11	12.6	0.2	0.27	11.4	0.2	1.8	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ThiF	PF00899.21	gi|227828344|ref|YP_002830124.1|	-	0.32	10.3	1.0	0.89	8.9	1.0	1.7	1	1	0	1	1	1	0	ThiF	family
Relaxase	PF03432.14	gi|227828344|ref|YP_002830124.1|	-	0.44	10.1	1.8	37	3.8	0.2	3.0	2	2	1	3	3	3	0	Relaxase/Mobilisation	nuclease	domain
PDDEXK_3	PF13366.6	gi|227828346|ref|YP_002830126.1|	-	0.0016	18.8	0.0	0.0025	18.2	0.0	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
McrBC	PF10117.9	gi|227828346|ref|YP_002830126.1|	-	0.019	14.1	0.3	0.025	13.7	0.3	1.1	1	0	0	1	1	1	0	McrBC	5-methylcytosine	restriction	system	component
Arena_glycoprot	PF00798.18	gi|227828346|ref|YP_002830126.1|	-	0.053	12.2	0.1	0.076	11.7	0.1	1.2	1	0	0	1	1	1	0	Arenavirus	glycoprotein
ASFV_p27	PF06556.11	gi|227828349|ref|YP_002830129.1|	-	0.0034	17.5	2.3	0.0051	16.9	2.3	1.2	1	0	0	1	1	1	1	IAP-like	protein	p27	C-terminus
DAO	PF01266.24	gi|227828350|ref|YP_002830130.1|	-	5.9e-12	45.8	0.0	1.8e-06	27.8	0.0	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|227828350|ref|YP_002830130.1|	-	0.0028	18.1	0.0	0.0044	17.4	0.0	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_8	PF13450.6	gi|227828350|ref|YP_002830130.1|	-	0.0053	17.0	0.0	0.01	16.1	0.0	1.4	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|227828350|ref|YP_002830130.1|	-	0.0066	16.4	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|227828350|ref|YP_002830130.1|	-	0.019	14.2	0.0	0.027	13.7	0.0	1.1	1	0	0	1	1	1	0	FAD	binding	domain
ApbA	PF02558.16	gi|227828350|ref|YP_002830130.1|	-	0.036	13.7	0.0	0.058	13.0	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_2	PF07992.14	gi|227828350|ref|YP_002830130.1|	-	0.041	13.1	0.0	0.081	12.1	0.0	1.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|227828350|ref|YP_002830130.1|	-	0.053	12.9	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|227828350|ref|YP_002830130.1|	-	0.058	13.7	0.0	0.13	12.5	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
AlaDh_PNT_C	PF01262.21	gi|227828350|ref|YP_002830130.1|	-	0.13	11.5	0.0	0.22	10.8	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Transposase_28	PF04195.12	gi|227828351|ref|YP_002830131.1|	-	0.16	12.2	0.0	0.5	10.6	0.0	1.8	2	0	0	2	2	2	0	Putative	gypsy	type	transposon
MoCF_biosynth	PF00994.24	gi|227828352|ref|YP_002830132.1|	-	2.8e-30	104.9	0.1	3.2e-30	104.7	0.1	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
Fer4_8	PF13183.6	gi|227828353|ref|YP_002830133.1|	-	6.4e-09	36.1	3.5	1.2e-08	35.2	3.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828353|ref|YP_002830133.1|	-	5.7e-08	33.2	14.5	1e-06	29.2	7.2	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828353|ref|YP_002830133.1|	-	8.6e-08	32.7	5.5	1.8e-07	31.7	5.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828353|ref|YP_002830133.1|	-	1.1e-07	31.3	15.2	0.0011	18.7	4.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|227828353|ref|YP_002830133.1|	-	3.3e-07	30.4	5.6	1.2e-06	28.6	6.0	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|227828353|ref|YP_002830133.1|	-	3.3e-07	30.5	1.6	0.0058	16.8	0.3	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828353|ref|YP_002830133.1|	-	9.2e-07	29.7	2.6	0.051	14.5	0.2	2.7	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|227828353|ref|YP_002830133.1|	-	7.3e-06	26.0	10.4	0.0002	21.4	11.3	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828353|ref|YP_002830133.1|	-	1.2e-05	25.2	14.1	0.0031	17.5	4.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|227828353|ref|YP_002830133.1|	-	2.6e-05	24.8	20.3	0.026	15.5	7.3	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828353|ref|YP_002830133.1|	-	0.00027	21.0	8.8	0.00072	19.6	8.8	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227828353|ref|YP_002830133.1|	-	0.00029	21.1	11.4	0.0083	16.6	2.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227828353|ref|YP_002830133.1|	-	0.00048	20.1	12.6	0.013	15.5	3.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|227828353|ref|YP_002830133.1|	-	0.0035	17.8	2.8	3	8.5	1.1	2.5	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|227828353|ref|YP_002830133.1|	-	0.013	16.3	3.9	2.1	9.2	0.2	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Receptor_IA-2	PF11548.8	gi|227828353|ref|YP_002830133.1|	-	0.1	12.6	0.1	21	5.1	0.1	2.5	2	0	0	2	2	2	0	Protein-tyrosine	phosphatase	receptor	IA-2
Fer4_20	PF14691.6	gi|227828353|ref|YP_002830133.1|	-	0.37	10.6	2.4	1.3	8.8	0.2	2.3	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_15	PF13459.6	gi|227828353|ref|YP_002830133.1|	-	1.1	10.1	4.6	28	5.6	0.2	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DEAD	PF00270.29	gi|227828354|ref|YP_002830134.1|	-	2e-24	86.3	0.0	5.6e-23	81.6	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|227828354|ref|YP_002830134.1|	-	6e-22	78.1	0.0	5.2e-19	68.6	0.0	2.7	2	0	0	2	2	2	2	Helicase	conserved	C-terminal	domain
DUF1998	PF09369.10	gi|227828354|ref|YP_002830134.1|	-	1.5e-13	51.3	0.2	4.5e-13	49.8	0.2	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
ResIII	PF04851.15	gi|227828354|ref|YP_002830134.1|	-	7.5e-08	32.6	0.0	2e-07	31.1	0.0	1.6	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF460	PF04312.13	gi|227828354|ref|YP_002830134.1|	-	0.00062	19.5	0.0	0.0021	17.8	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF460)
SecA_DEAD	PF07517.14	gi|227828354|ref|YP_002830134.1|	-	0.0024	17.2	0.0	0.0048	16.2	0.0	1.5	1	0	0	1	1	1	1	SecA	DEAD-like	domain
Oxidored-like	PF09791.9	gi|227828354|ref|YP_002830134.1|	-	0.18	11.5	3.6	0.46	10.2	3.6	1.6	1	0	0	1	1	1	0	Oxidoreductase-like	protein,	N-terminal
FlgH	PF02107.16	gi|227828355|ref|YP_002830135.1|	-	0.11	12.1	0.1	0.18	11.4	0.1	1.4	2	0	0	2	2	2	0	Flagellar	L-ring	protein
QueC	PF06508.13	gi|227828356|ref|YP_002830136.1|	-	1.1e-59	201.5	0.0	1.5e-59	201.0	0.0	1.2	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
GATase_7	PF13537.6	gi|227828356|ref|YP_002830136.1|	-	7.6e-17	61.4	0.0	1.8e-16	60.2	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|227828356|ref|YP_002830136.1|	-	8.5e-12	45.4	0.0	1.6e-11	44.5	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
ThiI	PF02568.14	gi|227828356|ref|YP_002830136.1|	-	6.6e-10	38.9	0.0	5.2e-09	36.0	0.0	2.3	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.16	gi|227828356|ref|YP_002830136.1|	-	4.5e-07	29.0	0.0	1.5e-06	27.3	0.0	1.8	2	0	0	2	2	2	1	tRNA	methyl	transferase
ATP_bind_3	PF01171.20	gi|227828356|ref|YP_002830136.1|	-	0.00026	20.8	0.0	0.0004	20.2	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
Asn_synthase	PF00733.21	gi|227828356|ref|YP_002830136.1|	-	0.0043	16.8	0.0	0.0067	16.1	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|227828356|ref|YP_002830136.1|	-	0.01	15.0	0.1	0.081	12.0	0.0	2.1	2	0	0	2	2	2	0	NAD	synthase
FeoB_N	PF02421.18	gi|227828356|ref|YP_002830136.1|	-	0.033	13.7	0.1	0.058	12.9	0.1	1.3	1	0	0	1	1	1	0	Ferrous	iron	transport	protein	B
TauE	PF01925.19	gi|227828357|ref|YP_002830137.1|	-	2.7e-41	141.7	28.2	3.5e-41	141.4	28.2	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF1634	PF07843.11	gi|227828358|ref|YP_002830138.1|	-	3.3e-30	104.2	8.0	4e-30	103.9	8.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1634)
DUF4418	PF14387.6	gi|227828358|ref|YP_002830138.1|	-	6.1	7.1	9.3	7	6.9	0.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4418)
Peptidase_M48_N	PF16491.5	gi|227828358|ref|YP_002830138.1|	-	7.5	6.4	10.6	1.9	8.3	6.0	1.9	1	1	1	2	2	2	0	CAAX	prenyl	protease	N-terminal,	five	membrane	helices
TrmB	PF01978.19	gi|227828360|ref|YP_002830140.1|	-	0.031	14.1	0.0	0.036	13.9	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Rio2_N	PF09202.11	gi|227828360|ref|YP_002830140.1|	-	0.047	13.9	0.0	0.053	13.8	0.0	1.0	1	0	0	1	1	1	0	Rio2,	N-terminal
Stork_head	PF10264.9	gi|227828360|ref|YP_002830140.1|	-	0.079	13.1	0.1	0.11	12.7	0.1	1.5	1	1	0	1	1	1	0	Winged	helix	Storkhead-box1	domain
STAT1_TAZ2bind	PF12162.8	gi|227828360|ref|YP_002830140.1|	-	0.13	11.9	0.0	0.19	11.3	0.0	1.3	1	0	0	1	1	1	0	STAT1	TAZ2	binding	domain
UPF0126	PF03458.13	gi|227828361|ref|YP_002830141.1|	-	1e-39	134.3	12.5	5.8e-20	71.0	4.8	2.1	2	0	0	2	2	2	2	UPF0126	domain
TRIC	PF05197.13	gi|227828361|ref|YP_002830141.1|	-	2.5e-05	24.0	2.6	3.9e-05	23.3	2.5	1.4	1	1	0	1	1	1	1	TRIC	channel
EamA	PF00892.20	gi|227828361|ref|YP_002830141.1|	-	0.71	10.0	13.2	0.3	11.2	9.4	2.2	1	1	1	2	2	2	0	EamA-like	transporter	family
NPCBM_assoc	PF10633.9	gi|227828363|ref|YP_002830143.1|	-	3.3e-12	46.5	15.9	0.005	17.1	0.1	8.1	8	1	0	8	8	8	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|227828363|ref|YP_002830143.1|	-	0.0034	17.6	1.7	0.0034	17.6	1.7	6.5	6	2	0	6	6	6	1	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|227828363|ref|YP_002830143.1|	-	0.0099	16.1	0.7	0.0099	16.1	0.7	6.5	7	1	0	7	7	7	1	CARDB
DUF3657	PF12394.8	gi|227828363|ref|YP_002830143.1|	-	0.13	12.8	0.1	34	5.1	0.0	3.4	3	0	0	3	3	3	0	Protein	FAM135
End_beta_barrel	PF12195.8	gi|227828363|ref|YP_002830143.1|	-	0.39	10.7	11.3	5	7.1	0.2	3.9	3	0	0	3	3	3	0	Beta	barrel	domain	of	bacteriophage	endosialidase
PRNT	PF15174.6	gi|227828363|ref|YP_002830143.1|	-	1.1	9.3	7.3	7.2	6.7	0.1	4.5	5	0	0	5	5	5	0	Prion-related	protein	testis-specific
RIFIN	PF02009.16	gi|227828363|ref|YP_002830143.1|	-	6.6	6.5	6.3	9.6	6.0	6.3	1.2	1	0	0	1	1	1	0	Rifin
Peptidase_M24	PF00557.24	gi|227828364|ref|YP_002830144.1|	-	8e-60	202.1	0.1	1e-59	201.8	0.1	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|227828364|ref|YP_002830144.1|	-	1.9e-15	57.7	0.1	3.1e-15	57.0	0.1	1.4	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
CREPT	PF16566.5	gi|227828364|ref|YP_002830144.1|	-	0.089	13.0	0.3	0.2	11.8	0.3	1.5	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Hist_deacetyl	PF00850.19	gi|227828365|ref|YP_002830145.1|	-	1.3e-56	192.4	0.0	1.8e-56	191.9	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
OrfB_Zn_ribbon	PF07282.11	gi|227828366|ref|YP_002830146.1|	-	5.2e-22	77.6	0.3	9.2e-22	76.8	0.3	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RuvC_1	PF18516.1	gi|227828366|ref|YP_002830146.1|	-	0.0065	15.7	0.1	2.7	7.1	0.0	2.7	1	1	0	2	2	2	2	RuvC	nuclease	domain
TF_Zn_Ribbon	PF08271.12	gi|227828366|ref|YP_002830146.1|	-	0.018	14.5	0.2	7.1	6.2	0.0	2.6	2	0	0	2	2	2	0	TFIIB	zinc-binding
DNA_methylase	PF00145.17	gi|227828366|ref|YP_002830146.1|	-	0.024	14.0	0.4	0.042	13.2	0.4	1.3	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
zf-ribbon_3	PF13248.6	gi|227828366|ref|YP_002830146.1|	-	0.037	13.4	2.0	6.2	6.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227828366|ref|YP_002830146.1|	-	0.044	13.5	1.5	7.4	6.4	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_IS605	PF01385.19	gi|227828366|ref|YP_002830146.1|	-	0.065	13.5	0.0	0.12	12.6	0.0	1.4	1	0	0	1	1	1	0	Probable	transposase
DZR	PF12773.7	gi|227828366|ref|YP_002830146.1|	-	0.079	13.0	1.0	0.15	12.1	1.0	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
Rubredoxin_2	PF18073.1	gi|227828366|ref|YP_002830146.1|	-	0.16	11.8	2.7	1.6	8.5	3.2	2.1	1	1	1	2	2	2	0	Rubredoxin	metal	binding	domain
zf-NADH-PPase	PF09297.11	gi|227828366|ref|YP_002830146.1|	-	0.28	10.9	1.4	13	5.6	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|227828366|ref|YP_002830146.1|	-	0.36	10.8	4.9	0.61	10.1	0.5	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.9	gi|227828366|ref|YP_002830146.1|	-	2.4	8.3	4.8	20	5.4	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
GATase_4	PF13230.6	gi|227828367|ref|YP_002830147.1|	-	0.00029	19.8	0.0	0.00039	19.4	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.6	gi|227828367|ref|YP_002830147.1|	-	0.068	13.4	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferase	domain
Lactamase_B_2	PF12706.7	gi|227828368|ref|YP_002830148.1|	-	6.5e-15	55.2	0.0	1.4e-14	54.1	0.0	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|227828368|ref|YP_002830148.1|	-	3.1e-08	33.9	0.0	6.2e-08	32.9	0.0	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DUF2100	PF09873.9	gi|227828368|ref|YP_002830148.1|	-	0.023	14.6	0.2	6.2	6.6	0.1	2.4	1	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2100)
Lactamase_B_3	PF13483.6	gi|227828368|ref|YP_002830148.1|	-	0.068	13.1	0.1	0.19	11.6	0.1	1.7	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
PfkB	PF00294.24	gi|227828369|ref|YP_002830149.1|	-	9.1e-59	199.2	2.0	1.1e-58	199.0	2.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|227828369|ref|YP_002830149.1|	-	2.8e-10	40.0	0.0	4.9e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Phos_pyr_kin	PF08543.12	gi|227828370|ref|YP_002830150.1|	-	1e-76	257.6	0.1	1.3e-76	257.2	0.1	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
PfkB	PF00294.24	gi|227828370|ref|YP_002830150.1|	-	1.1e-12	47.9	0.0	1.6e-12	47.4	0.0	1.3	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.17	gi|227828370|ref|YP_002830150.1|	-	3.3e-08	33.3	0.3	5.5e-08	32.6	0.0	1.4	2	0	0	2	2	2	1	Carbohydrate	kinase
Clathrin	PF00637.20	gi|227828370|ref|YP_002830150.1|	-	0.14	12.1	1.6	4.7	7.1	0.2	2.8	2	1	1	3	3	3	0	Region	in	Clathrin	and	VPS
PDDEXK_1	PF12705.7	gi|227828371|ref|YP_002830151.1|	-	5.5e-10	39.6	0.9	2.8e-08	34.0	1.0	2.6	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|227828371|ref|YP_002830151.1|	-	1.2e-08	35.2	0.1	1.7e-08	34.8	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_3	PF13366.6	gi|227828371|ref|YP_002830151.1|	-	1.7e-05	25.2	0.3	3.5e-05	24.2	0.1	1.6	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
RE_TdeIII	PF09520.10	gi|227828371|ref|YP_002830151.1|	-	0.00016	21.4	0.0	0.00025	20.8	0.0	1.2	1	0	0	1	1	1	1	Type	II	restriction	endonuclease,	TdeIII
Dna2	PF08696.11	gi|227828371|ref|YP_002830151.1|	-	0.082	12.7	0.0	0.17	11.6	0.0	1.6	1	1	0	1	1	1	0	DNA	replication	factor	Dna2
Glyco_tranf_2_3	PF13641.6	gi|227828372|ref|YP_002830152.1|	-	2.4e-35	122.5	0.0	3.1e-35	122.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|227828372|ref|YP_002830152.1|	-	2.1e-28	99.6	0.1	3e-28	99.1	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.26	gi|227828372|ref|YP_002830152.1|	-	3.9e-25	88.6	0.0	5.2e-25	88.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|227828372|ref|YP_002830152.1|	-	9.6e-12	44.7	0.0	1.8e-11	43.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|227828372|ref|YP_002830152.1|	-	1.1e-07	31.6	0.0	1.9e-06	27.6	0.0	2.0	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Cellulose_synt	PF03552.14	gi|227828372|ref|YP_002830152.1|	-	0.00015	20.5	4.7	0.00019	20.1	4.7	1.1	1	0	0	1	1	1	1	Cellulose	synthase
Glyco_tranf_2_4	PF13704.6	gi|227828372|ref|YP_002830152.1|	-	0.00026	21.4	0.0	0.00045	20.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Anp1	PF03452.14	gi|227828372|ref|YP_002830152.1|	-	0.029	13.8	0.0	0.048	13.1	0.0	1.3	1	0	0	1	1	1	0	Anp1
Chitin_synth_2	PF03142.15	gi|227828372|ref|YP_002830152.1|	-	0.42	9.2	7.8	14	4.1	7.2	2.3	2	1	0	2	2	2	0	Chitin	synthase
DUF4481	PF14800.6	gi|227828372|ref|YP_002830152.1|	-	2.1	7.7	5.3	3.4	7.0	5.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4481)
Lactamase_B	PF00753.27	gi|227828374|ref|YP_002830154.1|	-	1.9e-07	31.3	0.8	2.4e-05	24.5	0.9	2.2	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227828374|ref|YP_002830154.1|	-	6e-07	29.2	1.4	1.4e-06	27.9	1.4	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|227828374|ref|YP_002830154.1|	-	5.4e-06	26.4	0.1	8.3e-06	25.8	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DHH	PF01368.20	gi|227828374|ref|YP_002830154.1|	-	0.065	13.5	0.2	0.56	10.5	0.0	2.2	2	0	0	2	2	2	0	DHH	family
VIT1	PF01988.19	gi|227828375|ref|YP_002830155.1|	-	1.6e-45	155.6	0.5	1.9e-45	155.4	0.5	1.1	1	0	0	1	1	1	1	VIT	family
DUF4781	PF16013.5	gi|227828375|ref|YP_002830155.1|	-	0.059	12.2	0.0	0.092	11.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
PGG	PF13962.6	gi|227828375|ref|YP_002830155.1|	-	0.25	11.1	2.1	0.63	9.9	0.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function
Wzy_C	PF04932.15	gi|227828375|ref|YP_002830155.1|	-	0.32	10.6	5.4	0.7	9.5	2.2	2.3	2	1	0	2	2	2	0	O-Antigen	ligase
HTH_22	PF13309.6	gi|227828375|ref|YP_002830155.1|	-	0.39	10.8	2.4	4.7	7.4	0.2	2.4	2	1	0	2	2	2	0	HTH	domain
YqbF	PF14553.6	gi|227828375|ref|YP_002830155.1|	-	0.68	9.8	3.6	0.28	11.1	0.3	2.1	2	0	0	2	2	2	0	YqbF,	hypothetical	protein	domain
Deltameth_res	PF16020.5	gi|227828375|ref|YP_002830155.1|	-	8.5	6.3	10.1	0.4	10.6	0.3	3.0	3	0	0	3	3	3	0	Deltamethrin	resistance
DUF1129	PF06570.11	gi|227828375|ref|YP_002830155.1|	-	9.2	5.7	8.9	2	7.9	2.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
AAA_assoc_C	PF09821.9	gi|227828376|ref|YP_002830156.1|	-	1.2e-28	100.1	0.1	1.4e-28	99.8	0.1	1.1	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
CdvA	PF18822.1	gi|227828376|ref|YP_002830156.1|	-	0.06	13.2	0.5	0.1	12.5	0.5	1.3	1	0	0	1	1	1	0	CdvA-like	coiled-coil	domain
EbsA	PF17255.2	gi|227828376|ref|YP_002830156.1|	-	0.1	12.9	1.9	0.13	12.6	1.5	1.4	1	1	0	1	1	1	0	EbsA-like	protein
Glyco_hydro_80	PF13647.6	gi|227828376|ref|YP_002830156.1|	-	0.21	11.1	0.0	0.28	10.6	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	80	of	chitosanase	A
DDE_Tnp_2	PF04693.12	gi|227828377|ref|YP_002830157.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227828377|ref|YP_002830157.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227828377|ref|YP_002830157.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
AA_permease	PF00324.21	gi|227828378|ref|YP_002830158.1|	-	0.009	14.7	9.4	0.0096	14.5	9.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Fungus-induced	PF10917.8	gi|227828378|ref|YP_002830158.1|	-	0.55	10.6	0.2	0.55	10.6	0.2	2.4	2	0	0	2	2	2	0	Fungus-induced	protein
PaREP1	PF05942.11	gi|227828379|ref|YP_002830159.1|	-	4.5e-05	23.3	0.0	0.00011	22.1	0.0	1.6	1	1	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Aminotran_1_2	PF00155.21	gi|227828380|ref|YP_002830160.1|	-	9e-30	104.0	0.0	1e-29	103.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|227828380|ref|YP_002830160.1|	-	1.8e-08	33.6	0.0	3.1e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
OCD_Mu_crystall	PF02423.15	gi|227828381|ref|YP_002830161.1|	-	3.1e-30	105.2	0.1	3.8e-30	104.9	0.1	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
NAD_binding_2	PF03446.15	gi|227828381|ref|YP_002830161.1|	-	0.00075	19.7	0.0	0.0014	18.9	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PPS_PS	PF02006.16	gi|227828381|ref|YP_002830161.1|	-	0.0015	18.1	0.3	0.051	13.1	0.0	2.5	1	1	0	2	2	2	1	Phosphopantothenate/pantothenate	synthetase
Shikimate_DH	PF01488.20	gi|227828381|ref|YP_002830161.1|	-	0.0048	17.0	0.1	0.0084	16.2	0.1	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|227828381|ref|YP_002830161.1|	-	0.031	13.6	0.0	0.069	12.5	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF4988	PF16378.5	gi|227828381|ref|YP_002830161.1|	-	0.063	12.9	0.1	0.1	12.2	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function
HTH_11	PF08279.12	gi|227828382|ref|YP_002830162.1|	-	1.1e-05	25.2	1.5	7.5e-05	22.6	0.0	2.5	2	1	1	3	3	3	1	HTH	domain
HTH_24	PF13412.6	gi|227828382|ref|YP_002830162.1|	-	1.6e-05	24.4	0.1	1.6e-05	24.4	0.1	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_DeoR	PF08220.12	gi|227828382|ref|YP_002830162.1|	-	9.1e-05	22.1	0.1	0.00026	20.6	0.0	1.9	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|227828382|ref|YP_002830162.1|	-	0.00033	20.5	0.1	0.001	19.0	0.0	1.8	2	0	0	2	2	2	1	MarR	family
Fe_dep_repress	PF01325.19	gi|227828382|ref|YP_002830162.1|	-	0.0011	19.1	0.4	0.0018	18.4	0.0	1.6	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoC	PF09012.10	gi|227828382|ref|YP_002830162.1|	-	0.0027	17.7	0.3	0.056	13.5	0.0	2.1	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
MarR_2	PF12802.7	gi|227828382|ref|YP_002830162.1|	-	0.011	15.7	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_Mga	PF08280.11	gi|227828382|ref|YP_002830162.1|	-	0.018	15.1	0.6	0.057	13.5	0.0	1.9	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF4423	PF14394.6	gi|227828382|ref|YP_002830162.1|	-	0.021	14.6	1.3	0.073	12.8	0.7	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
Bacillus_HBL	PF05791.11	gi|227828382|ref|YP_002830162.1|	-	0.025	14.4	1.0	0.031	14.1	1.0	1.2	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF2250	PF10007.9	gi|227828382|ref|YP_002830162.1|	-	0.045	13.9	3.0	0.063	13.4	0.2	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_5	PF01022.20	gi|227828382|ref|YP_002830162.1|	-	0.052	13.4	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|227828382|ref|YP_002830162.1|	-	0.055	13.8	0.1	0.19	12.1	0.0	1.9	1	1	1	2	2	2	0	Transcriptional	regulator
FlaC_arch	PF05377.11	gi|227828382|ref|YP_002830162.1|	-	0.077	13.4	1.9	0.16	12.4	1.9	1.5	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF3394	PF11874.8	gi|227828382|ref|YP_002830162.1|	-	0.12	12.0	0.1	0.13	12.0	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3394)
HTH_IclR	PF09339.10	gi|227828382|ref|YP_002830162.1|	-	0.13	12.1	0.0	0.54	10.1	0.0	1.9	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_36	PF13730.6	gi|227828382|ref|YP_002830162.1|	-	0.16	12.0	1.0	0.23	11.4	0.1	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF4094	PF13334.6	gi|227828382|ref|YP_002830162.1|	-	0.2	12.1	0.8	0.24	11.9	0.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
Med9	PF07544.13	gi|227828382|ref|YP_002830162.1|	-	0.24	11.5	6.2	9.4	6.4	6.2	2.1	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Glycos_transf_2	PF00535.26	gi|227828383|ref|YP_002830163.1|	-	1.5e-30	106.2	0.2	2.7e-30	105.4	0.1	1.4	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|227828383|ref|YP_002830163.1|	-	4.8e-10	39.7	0.0	5.4e-10	39.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|227828383|ref|YP_002830163.1|	-	7.2e-05	22.4	0.0	9.9e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|227828383|ref|YP_002830163.1|	-	0.024	14.1	0.0	0.037	13.5	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|227828383|ref|YP_002830163.1|	-	0.048	14.2	0.0	0.11	13.0	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glyco_transf_64	PF09258.10	gi|227828383|ref|YP_002830163.1|	-	0.14	11.4	0.0	0.18	11.0	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	family	64	domain
DUF1947	PF09183.10	gi|227828384|ref|YP_002830164.1|	-	1.8e-24	85.8	1.0	3.1e-24	85.0	1.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1947)
PUA	PF01472.20	gi|227828384|ref|YP_002830164.1|	-	8e-17	61.0	0.3	1.4e-16	60.2	0.3	1.4	1	0	0	1	1	1	1	PUA	domain
PSP1	PF04468.12	gi|227828384|ref|YP_002830164.1|	-	0.09	13.1	0.2	0.15	12.3	0.2	1.4	1	0	0	1	1	1	0	PSP1	C-terminal	conserved	region
Ald_Xan_dh_C2	PF02738.18	gi|227828385|ref|YP_002830165.1|	-	4.3e-158	527.2	0.0	5e-158	527.0	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227828385|ref|YP_002830165.1|	-	7.2e-13	48.9	0.0	3.2e-11	43.5	0.0	2.5	1	1	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Peptidase_M48	PF01435.18	gi|227828386|ref|YP_002830166.1|	-	5e-22	78.6	4.6	7.7e-21	74.8	4.6	2.5	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M78	PF06114.13	gi|227828386|ref|YP_002830166.1|	-	0.4	10.6	4.2	0.88	9.5	4.2	1.6	1	1	0	1	1	1	0	IrrE	N-terminal-like	domain
DUF4220	PF13968.6	gi|227828386|ref|YP_002830166.1|	-	2.2	7.6	8.5	3.3	7.0	2.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4220)
ADH_N	PF08240.12	gi|227828387|ref|YP_002830167.1|	-	5e-26	90.7	0.3	5e-26	90.7	0.3	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227828387|ref|YP_002830167.1|	-	1.4e-20	73.6	0.1	2.3e-20	72.9	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|227828387|ref|YP_002830167.1|	-	2.3e-11	43.6	0.5	3.2e-11	43.1	0.5	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|227828387|ref|YP_002830167.1|	-	0.0034	18.4	0.0	0.006	17.6	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Fer4_17	PF13534.6	gi|227828387|ref|YP_002830167.1|	-	0.044	14.3	1.2	0.059	13.9	0.2	1.7	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF4147	PF13660.6	gi|227828387|ref|YP_002830167.1|	-	0.064	12.8	0.3	0.48	9.9	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4147)
CoA_binding	PF02629.19	gi|227828387|ref|YP_002830167.1|	-	0.11	13.2	1.2	0.41	11.3	0.7	2.1	1	1	1	2	2	2	0	CoA	binding	domain
Fer4_8	PF13183.6	gi|227828387|ref|YP_002830167.1|	-	0.33	11.4	2.9	0.29	11.6	0.5	1.9	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
CobD_Cbib	PF03186.13	gi|227828388|ref|YP_002830168.1|	-	1.6e-71	240.7	0.0	2.2e-71	240.3	0.0	1.1	1	0	0	1	1	1	1	CobD/Cbib	protein
C4bp_oligo	PF18453.1	gi|227828388|ref|YP_002830168.1|	-	0.051	13.8	0.1	0.11	12.7	0.1	1.5	1	0	0	1	1	1	0	Oligomerization	domain	of	C4b-binding	protein	alpha
CobS	PF02654.15	gi|227828389|ref|YP_002830169.1|	-	2.2e-34	119.5	6.0	2.6e-34	119.2	6.0	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
GATase_3	PF07685.14	gi|227828390|ref|YP_002830170.1|	-	1.8e-38	132.1	0.1	3.9e-38	131.0	0.0	1.6	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
AAA_26	PF13500.6	gi|227828390|ref|YP_002830170.1|	-	1.4e-13	51.1	0.0	1.2e-07	31.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
CbiA	PF01656.23	gi|227828390|ref|YP_002830170.1|	-	4.1e-12	46.3	0.0	1.2e-11	44.7	0.0	1.8	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase	PF00117.28	gi|227828390|ref|YP_002830170.1|	-	0.0022	17.8	0.0	0.016	15.0	0.0	2.0	2	0	0	2	2	2	1	Glutamine	amidotransferase	class-I
SNO	PF01174.19	gi|227828390|ref|YP_002830170.1|	-	0.003	17.4	0.0	0.0052	16.7	0.0	1.4	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GMP_synt_C	PF00958.22	gi|227828391|ref|YP_002830171.1|	-	8.9e-25	86.6	0.7	2.3e-21	75.6	0.2	2.6	1	1	1	2	2	2	2	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|227828391|ref|YP_002830171.1|	-	2.7e-12	46.4	0.3	1.4e-11	44.0	0.2	2.1	2	1	0	2	2	2	1	NAD	synthase
ATP_bind_3	PF01171.20	gi|227828391|ref|YP_002830171.1|	-	4.9e-08	32.9	0.0	8.1e-08	32.2	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
QueC	PF06508.13	gi|227828391|ref|YP_002830171.1|	-	0.00086	18.9	0.0	0.021	14.3	0.0	2.2	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|227828391|ref|YP_002830171.1|	-	0.0012	17.7	0.0	0.13	11.1	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
ThiI	PF02568.14	gi|227828391|ref|YP_002830171.1|	-	0.043	13.4	0.2	0.22	11.1	0.0	2.4	2	1	0	2	2	2	0	Thiamine	biosynthesis	protein	(ThiI)
Arginosuc_synth	PF00764.19	gi|227828391|ref|YP_002830171.1|	-	0.067	12.5	0.0	0.073	12.3	0.0	1.2	1	0	0	1	1	1	0	Arginosuccinate	synthase
Peptidase_M48	PF01435.18	gi|227828392|ref|YP_002830172.1|	-	1.9e-27	96.3	0.1	3e-26	92.4	0.0	2.0	2	0	0	2	2	2	1	Peptidase	family	M48
Zn_peptidase_2	PF04298.12	gi|227828392|ref|YP_002830172.1|	-	0.0012	18.4	0.2	0.0012	18.4	0.2	2.2	3	0	0	3	3	3	1	Putative	neutral	zinc	metallopeptidase
CBS	PF00571.28	gi|227828393|ref|YP_002830173.1|	-	2.9e-31	107.7	7.0	1.7e-15	57.2	0.3	2.0	2	0	0	2	2	2	2	CBS	domain
IF3_N	PF05198.16	gi|227828393|ref|YP_002830173.1|	-	0.016	15.5	0.8	5.6	7.3	0.0	2.7	2	1	1	3	3	3	0	Translation	initiation	factor	IF-3,	N-terminal	domain
Polysacc_synt	PF01943.17	gi|227828394|ref|YP_002830174.1|	-	1.4e-05	24.7	33.2	1.4e-05	24.7	33.2	3.5	1	1	2	3	3	3	1	Polysaccharide	biosynthesis	protein
BTP	PF05232.12	gi|227828394|ref|YP_002830174.1|	-	0.00076	19.5	1.8	0.00076	19.5	1.8	4.3	4	0	0	4	4	4	1	Chlorhexidine	efflux	transporter
DeoC	PF01791.9	gi|227828395|ref|YP_002830175.1|	-	7.9e-32	110.7	0.0	9.3e-32	110.5	0.0	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
PMT_2	PF13231.6	gi|227828396|ref|YP_002830176.1|	-	1.3e-08	35.2	14.1	1.3e-08	35.2	14.1	2.6	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Mannosyl_trans4	PF15971.5	gi|227828396|ref|YP_002830176.1|	-	0.00021	21.2	2.1	0.00044	20.1	2.1	1.5	1	0	0	1	1	1	1	DolP-mannose	mannosyltransferase
DUF5408	PF17402.2	gi|227828396|ref|YP_002830176.1|	-	0.13	12.2	0.1	28	4.7	0.2	3.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5408)
AA_permease	PF00324.21	gi|227828397|ref|YP_002830177.1|	-	3.4e-21	75.4	54.4	7.5e-21	74.3	54.4	1.6	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|227828397|ref|YP_002830177.1|	-	8.8e-15	54.4	60.5	1.1e-14	54.2	60.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
NTP_transferase	PF00483.23	gi|227828398|ref|YP_002830178.1|	-	8.1e-28	97.7	0.0	1e-27	97.3	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|227828398|ref|YP_002830178.1|	-	1.7e-07	31.7	0.0	2.2e-07	31.4	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
BcrAD_BadFG	PF01869.20	gi|227828399|ref|YP_002830179.1|	-	3.4e-52	177.6	0.1	5.2e-52	177.0	0.1	1.3	1	1	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
ROK	PF00480.20	gi|227828399|ref|YP_002830179.1|	-	0.0022	17.5	0.1	0.0083	15.6	0.0	1.8	2	0	0	2	2	2	1	ROK	family
G_glu_transpept	PF01019.21	gi|227828400|ref|YP_002830180.1|	-	2.6e-82	277.2	0.0	3.3e-82	276.9	0.0	1.1	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
Pep_deformylase	PF01327.21	gi|227828401|ref|YP_002830181.1|	-	0.091	12.4	0.1	0.14	11.7	0.1	1.2	1	0	0	1	1	1	0	Polypeptide	deformylase
KaiA	PF07688.12	gi|227828401|ref|YP_002830181.1|	-	0.1	12.8	0.2	0.12	12.5	0.2	1.1	1	0	0	1	1	1	0	KaiA	C-terminal	domain
MazG	PF03819.17	gi|227828402|ref|YP_002830182.1|	-	9e-14	51.4	0.3	1.3e-13	51.0	0.3	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
MazG-like	PF12643.7	gi|227828402|ref|YP_002830182.1|	-	3.5e-07	30.4	0.3	3.5e-07	30.4	0.3	1.5	2	0	0	2	2	2	1	MazG-like	family
PRA-PH	PF01503.17	gi|227828402|ref|YP_002830182.1|	-	9.5e-06	26.0	0.2	1.1e-05	25.7	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
Helicase_RecD	PF05127.14	gi|227828403|ref|YP_002830183.1|	-	6.5e-48	162.9	0.0	1.1e-47	162.1	0.0	1.4	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|227828403|ref|YP_002830183.1|	-	5.7e-36	124.0	0.0	9.2e-27	93.9	0.0	2.3	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|227828403|ref|YP_002830183.1|	-	9e-24	83.2	0.1	2e-23	82.1	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
AAA_30	PF13604.6	gi|227828403|ref|YP_002830183.1|	-	1.9e-06	27.7	0.1	3.2e-06	27.0	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
Acetyltransf_7	PF13508.7	gi|227828403|ref|YP_002830183.1|	-	0.00017	21.9	0.0	0.00049	20.5	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|227828403|ref|YP_002830183.1|	-	0.00032	20.9	0.1	0.001	19.3	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|227828403|ref|YP_002830183.1|	-	0.011	15.6	0.0	0.029	14.3	0.0	1.6	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DEAD	PF00270.29	gi|227828403|ref|YP_002830183.1|	-	0.022	14.6	0.0	0.055	13.2	0.0	1.7	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
YwiC	PF14256.6	gi|227828404|ref|YP_002830184.1|	-	0.11	12.8	11.2	0.18	12.1	2.0	2.5	1	1	1	2	2	2	0	YwiC-like	protein
Aminotran_3	PF00202.21	gi|227828406|ref|YP_002830186.1|	-	2.5e-110	368.9	0.0	3.1e-110	368.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Topoisom_I	PF01028.20	gi|227828406|ref|YP_002830186.1|	-	0.04	13.2	0.0	0.06	12.6	0.0	1.3	1	0	0	1	1	1	0	Eukaryotic	DNA	topoisomerase	I,	catalytic	core
TPP_enzyme_N	PF02776.18	gi|227828407|ref|YP_002830187.1|	-	2.4e-43	147.7	0.0	5.4e-43	146.6	0.0	1.6	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|227828407|ref|YP_002830187.1|	-	5.3e-11	42.5	0.0	2.3e-10	40.5	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|227828407|ref|YP_002830187.1|	-	2.2e-05	24.2	0.0	0.00019	21.1	0.0	2.5	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
Aldo_ket_red	PF00248.21	gi|227828408|ref|YP_002830188.1|	-	3.1e-69	233.4	0.1	3.1e-67	226.9	0.1	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Terminase_1	PF03354.15	gi|227828408|ref|YP_002830188.1|	-	0.017	13.7	0.0	0.03	12.9	0.0	1.4	1	0	0	1	1	1	0	Phage	Terminase
Pkinase	PF00069.25	gi|227828409|ref|YP_002830189.1|	-	2.6e-26	92.6	0.0	4.6e-26	91.8	0.0	1.4	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|227828409|ref|YP_002830189.1|	-	1.9e-11	43.8	0.1	7.4e-11	41.8	0.0	2.1	2	1	0	2	2	2	1	Protein	tyrosine	kinase
ANAPC3	PF12895.7	gi|227828409|ref|YP_002830189.1|	-	1.1e-07	32.0	3.2	4.1e-06	26.9	0.1	2.8	3	0	0	3	3	3	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_16	PF13432.6	gi|227828409|ref|YP_002830189.1|	-	1.7e-07	31.8	0.1	0.00019	22.0	0.0	3.8	3	1	1	4	4	4	1	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|227828409|ref|YP_002830189.1|	-	1.2e-05	25.0	7.4	0.0048	16.9	0.0	4.7	5	0	0	5	5	5	2	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|227828409|ref|YP_002830189.1|	-	1.3e-05	25.6	0.0	0.0056	17.2	0.0	2.6	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|227828409|ref|YP_002830189.1|	-	0.00025	20.7	3.8	0.033	14.0	0.0	4.3	4	0	0	4	4	4	1	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|227828409|ref|YP_002830189.1|	-	0.00029	20.8	1.1	0.65	10.3	0.0	3.4	3	0	0	3	3	2	2	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|227828409|ref|YP_002830189.1|	-	0.00039	21.0	0.0	0.14	13.0	0.0	3.3	2	1	1	3	3	2	1	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|227828409|ref|YP_002830189.1|	-	0.0024	17.8	0.0	0.9	9.7	0.0	3.6	3	0	0	3	3	3	1	Tetratricopeptide	repeat
FTA2	PF13095.6	gi|227828409|ref|YP_002830189.1|	-	0.0094	15.6	0.4	0.15	11.6	0.1	2.8	3	0	0	3	3	3	1	Kinetochore	Sim4	complex	subunit	FTA2
APH	PF01636.23	gi|227828409|ref|YP_002830189.1|	-	0.01	15.8	0.0	3.9	7.3	0.0	2.5	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
DUF1955	PF09205.10	gi|227828409|ref|YP_002830189.1|	-	0.015	15.0	0.4	1.3	8.8	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1955)
SRP_TPR_like	PF17004.5	gi|227828409|ref|YP_002830189.1|	-	0.025	14.6	5.7	2.5	8.1	0.2	2.9	2	1	0	2	2	2	0	Putative	TPR-like	repeat
HrpB1_HrpK	PF09613.10	gi|227828409|ref|YP_002830189.1|	-	0.033	13.8	0.0	3.2	7.4	0.0	2.7	2	1	1	3	3	3	0	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
TPR_12	PF13424.6	gi|227828409|ref|YP_002830189.1|	-	0.047	14.0	0.2	12	6.3	0.0	3.2	3	1	1	4	4	3	0	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|227828409|ref|YP_002830189.1|	-	0.052	14.2	0.8	18	6.2	0.0	4.4	3	1	1	4	4	4	0	Tetratricopeptide	repeat
PPR	PF01535.20	gi|227828409|ref|YP_002830189.1|	-	1.2	9.6	5.5	61	4.2	0.1	4.6	5	0	0	5	5	4	0	PPR	repeat
Pirin_C	PF05726.13	gi|227828410|ref|YP_002830190.1|	-	0.04	14.3	0.0	0.049	14.0	0.0	1.1	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
Ribonuc_L-PSP	PF01042.21	gi|227828411|ref|YP_002830191.1|	-	2.1e-41	140.7	0.0	2.4e-41	140.6	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Pox_J1	PF03338.15	gi|227828411|ref|YP_002830191.1|	-	0.082	12.8	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Poxvirus	J1	protein
dUTPase_2	PF08761.11	gi|227828411|ref|YP_002830191.1|	-	0.14	12.4	0.0	0.17	12.1	0.0	1.1	1	0	0	1	1	1	0	dUTPase
CBS	PF00571.28	gi|227828412|ref|YP_002830192.1|	-	2.5e-39	133.5	13.3	1.8e-10	41.1	0.1	4.1	4	0	0	4	4	4	4	CBS	domain
Glu_dehyd_C	PF16912.5	gi|227828413|ref|YP_002830193.1|	-	9e-30	103.7	0.0	1.2e-29	103.3	0.0	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|227828413|ref|YP_002830193.1|	-	1e-22	80.1	0.1	1.7e-22	79.4	0.1	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
FAD_binding_3	PF01494.19	gi|227828413|ref|YP_002830193.1|	-	0.006	15.9	0.0	0.0094	15.2	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
ADH_zinc_N	PF00107.26	gi|227828413|ref|YP_002830193.1|	-	0.03	14.3	0.0	0.052	13.5	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
DapB_N	PF01113.20	gi|227828413|ref|YP_002830193.1|	-	0.041	14.0	0.0	0.083	13.0	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
AMP-binding	PF00501.28	gi|227828414|ref|YP_002830194.1|	-	2.7e-83	280.0	0.0	3.5e-83	279.6	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227828414|ref|YP_002830194.1|	-	4.5e-25	88.4	2.4	4.6e-25	88.4	1.0	1.8	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|227828414|ref|YP_002830194.1|	-	2.1e-18	65.9	1.7	4.2e-18	65.0	1.7	1.5	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
TIR	PF01582.20	gi|227828414|ref|YP_002830194.1|	-	0.12	12.1	0.1	37	4.1	0.0	3.2	3	0	0	3	3	3	0	TIR	domain
4HB_MCP_1	PF12729.7	gi|227828414|ref|YP_002830194.1|	-	1.1	8.8	3.1	1.6	8.3	1.0	2.1	2	0	0	2	2	2	0	Four	helix	bundle	sensory	module	for	signal	transduction
Voltage_CLC	PF00654.20	gi|227828415|ref|YP_002830195.1|	-	6.9e-92	308.4	36.7	7.8e-92	308.2	30.0	2.0	2	0	0	2	2	2	2	Voltage	gated	chloride	channel
CBS	PF00571.28	gi|227828415|ref|YP_002830195.1|	-	1.2e-15	57.6	0.1	1.3e-06	28.7	0.0	2.5	2	0	0	2	2	2	2	CBS	domain
Oxidored_molyb	PF00174.19	gi|227828416|ref|YP_002830196.1|	-	6.2e-39	133.4	0.0	7.7e-39	133.1	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
PsiE	PF06146.12	gi|227828417|ref|YP_002830197.1|	-	4.2e-08	33.5	3.2	4.2e-08	33.5	3.2	1.7	2	0	0	2	2	2	1	Phosphate-starvation-inducible	E
MR_MLE_C	PF13378.6	gi|227828418|ref|YP_002830198.1|	-	1.8e-51	174.8	0.6	2.3e-51	174.5	0.0	1.4	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227828418|ref|YP_002830198.1|	-	1.6e-14	54.1	0.0	3.3e-14	53.1	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
DHDPS	PF00701.22	gi|227828419|ref|YP_002830199.1|	-	2.8e-42	144.4	0.0	3.2e-42	144.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
PfkB	PF00294.24	gi|227828420|ref|YP_002830200.1|	-	6.3e-43	147.2	0.0	7.1e-43	147.0	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Aldedh	PF00171.22	gi|227828421|ref|YP_002830201.1|	-	9.6e-113	377.1	0.0	1.1e-112	376.9	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|227828421|ref|YP_002830201.1|	-	1.9e-06	27.2	0.0	3.4e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
Na_Ca_ex	PF01699.24	gi|227828422|ref|YP_002830202.1|	-	9.6e-33	113.3	33.7	2.3e-19	69.8	12.5	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Molybdopterin	PF00384.22	gi|227828423|ref|YP_002830203.1|	-	1.1e-10	41.1	0.0	1.6e-06	27.4	0.0	2.3	2	0	0	2	2	2	2	Molybdopterin	oxidoreductase
DUF1404	PF07185.11	gi|227828424|ref|YP_002830204.1|	-	5.2e-17	62.1	3.4	5.8e-17	61.9	3.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
HTH_24	PF13412.6	gi|227828425|ref|YP_002830205.1|	-	1.1e-06	28.1	0.1	2.1e-06	27.2	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|227828425|ref|YP_002830205.1|	-	2.1e-06	27.5	0.2	6.8e-06	25.9	0.2	1.9	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.22	gi|227828425|ref|YP_002830205.1|	-	1.3e-05	25.0	0.0	3.6e-05	23.6	0.0	1.7	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|227828425|ref|YP_002830205.1|	-	2.1e-05	24.3	0.0	5.7e-05	22.9	0.0	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FaeA	PF04703.12	gi|227828425|ref|YP_002830205.1|	-	3.6e-05	24.1	0.0	8.1e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	FaeA-like	protein
HTH_20	PF12840.7	gi|227828425|ref|YP_002830205.1|	-	0.00024	21.1	0.0	0.00042	20.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|227828425|ref|YP_002830205.1|	-	0.00054	19.7	0.0	0.0011	18.7	0.0	1.5	1	0	0	1	1	1	1	LexA	DNA	binding	domain
PadR	PF03551.14	gi|227828425|ref|YP_002830205.1|	-	0.001	19.0	0.0	0.0022	17.9	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|227828425|ref|YP_002830205.1|	-	0.0011	18.8	0.0	0.002	18.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|227828425|ref|YP_002830205.1|	-	0.0015	19.0	0.0	0.0045	17.5	0.0	1.9	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|227828425|ref|YP_002830205.1|	-	0.0039	17.3	0.1	0.0092	16.1	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|227828425|ref|YP_002830205.1|	-	0.0042	16.8	0.0	0.0097	15.6	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|227828425|ref|YP_002830205.1|	-	0.0056	16.6	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|227828425|ref|YP_002830205.1|	-	0.0087	15.8	0.0	0.02	14.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_10	PF04967.12	gi|227828425|ref|YP_002830205.1|	-	0.012	15.4	0.0	0.024	14.4	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HxlR	PF01638.17	gi|227828425|ref|YP_002830205.1|	-	0.015	15.1	0.0	0.033	14.0	0.0	1.5	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Sulfolobus_pRN	PF05584.11	gi|227828425|ref|YP_002830205.1|	-	0.036	14.1	0.0	0.08	13.0	0.0	1.6	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
SMC_ScpB	PF04079.16	gi|227828425|ref|YP_002830205.1|	-	0.048	13.3	0.1	0.087	12.4	0.1	1.5	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_5	PF01022.20	gi|227828425|ref|YP_002830205.1|	-	0.086	12.7	0.0	0.21	11.5	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4	PF04545.16	gi|227828425|ref|YP_002830205.1|	-	0.12	11.9	0.0	0.24	10.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
AA_permease_2	PF13520.6	gi|227828426|ref|YP_002830206.1|	-	6.2e-24	84.6	62.7	6.2e-24	84.6	62.7	1.6	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227828426|ref|YP_002830206.1|	-	2.9e-06	26.2	54.8	4.2e-06	25.6	54.8	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AC_N	PF16214.5	gi|227828426|ref|YP_002830206.1|	-	0.17	11.0	2.1	0.31	10.1	2.1	1.4	1	0	0	1	1	1	0	Adenylyl	cyclase	N-terminal	extracellular	and	transmembrane	region
Glyco_hydro_1	PF00232.18	gi|227828426|ref|YP_002830206.1|	-	0.2	10.0	0.0	0.3	9.5	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	1
HTH_45	PF14947.6	gi|227828427|ref|YP_002830207.1|	-	7.3e-09	35.5	2.3	1.2e-08	34.8	2.3	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|227828427|ref|YP_002830207.1|	-	3.3e-07	30.1	0.6	5.3e-07	29.5	0.5	1.5	1	1	0	1	1	1	1	HTH	domain
HTH_24	PF13412.6	gi|227828427|ref|YP_002830207.1|	-	1.2e-06	28.0	0.6	2.1e-06	27.2	0.6	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|227828427|ref|YP_002830207.1|	-	6.8e-06	25.8	0.0	1.1e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_12	PF08461.10	gi|227828427|ref|YP_002830207.1|	-	2.5e-05	24.1	1.2	4.4e-05	23.4	1.2	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.19	gi|227828427|ref|YP_002830207.1|	-	3.8e-05	23.5	0.2	5.9e-05	22.9	0.2	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|227828427|ref|YP_002830207.1|	-	0.00015	22.0	0.1	0.00027	21.2	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.20	gi|227828427|ref|YP_002830207.1|	-	0.00016	21.4	0.5	0.00028	20.7	0.5	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.12	gi|227828427|ref|YP_002830207.1|	-	0.00018	21.2	0.2	0.00035	20.3	0.2	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|227828427|ref|YP_002830207.1|	-	0.00024	21.0	0.1	0.00031	20.7	0.1	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|227828427|ref|YP_002830207.1|	-	0.00024	20.7	0.0	0.00041	19.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.7	gi|227828427|ref|YP_002830207.1|	-	0.00033	20.5	0.0	0.0005	19.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
SelB-wing_3	PF09107.11	gi|227828427|ref|YP_002830207.1|	-	0.00044	19.8	0.0	0.00065	19.3	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	SelB,	winged	helix
HTH_23	PF13384.6	gi|227828427|ref|YP_002830207.1|	-	0.00086	19.0	0.0	0.0015	18.2	0.0	1.4	1	1	0	1	1	1	1	Homeodomain-like	domain
HTH_20	PF12840.7	gi|227828427|ref|YP_002830207.1|	-	0.0011	19.0	0.0	0.0014	18.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|227828427|ref|YP_002830207.1|	-	0.0014	18.5	0.3	0.0039	17.1	0.1	1.7	2	0	0	2	2	2	1	MarR	family
GerE	PF00196.19	gi|227828427|ref|YP_002830207.1|	-	0.0021	17.6	0.2	0.0039	16.7	0.1	1.5	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_Crp_2	PF13545.6	gi|227828427|ref|YP_002830207.1|	-	0.0024	17.8	0.0	0.0033	17.4	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227828427|ref|YP_002830207.1|	-	0.0026	17.9	0.2	0.0058	16.8	0.1	1.6	1	1	1	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF505	PF04458.12	gi|227828427|ref|YP_002830207.1|	-	0.0032	15.9	0.2	0.0037	15.7	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_Mga	PF08280.11	gi|227828427|ref|YP_002830207.1|	-	0.0032	17.4	0.3	0.0068	16.4	0.3	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF4423	PF14394.6	gi|227828427|ref|YP_002830207.1|	-	0.0034	17.1	0.1	0.0046	16.7	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
FaeA	PF04703.12	gi|227828427|ref|YP_002830207.1|	-	0.0036	17.6	0.0	0.0059	16.9	0.0	1.2	1	0	0	1	1	1	1	FaeA-like	protein
HTH_29	PF13551.6	gi|227828427|ref|YP_002830207.1|	-	0.0069	16.4	0.0	0.01	15.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
DUF2250	PF10007.9	gi|227828427|ref|YP_002830207.1|	-	0.013	15.6	0.3	0.013	15.6	0.3	1.9	2	1	0	2	2	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Ribosomal_S19e	PF01090.19	gi|227828427|ref|YP_002830207.1|	-	0.014	15.1	0.0	0.021	14.5	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
B-block_TFIIIC	PF04182.12	gi|227828427|ref|YP_002830207.1|	-	0.018	15.2	1.9	0.1	12.7	0.2	2.2	1	1	1	2	2	2	0	B-block	binding	subunit	of	TFIIIC
SgrR_N	PF12793.7	gi|227828427|ref|YP_002830207.1|	-	0.021	15.0	0.0	0.03	14.6	0.0	1.2	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
Sigma70_r4	PF04545.16	gi|227828427|ref|YP_002830207.1|	-	0.023	14.2	0.2	0.29	10.7	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_27	PF13463.6	gi|227828427|ref|YP_002830207.1|	-	0.027	15.0	0.2	0.049	14.1	0.2	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RPA_C	PF08784.11	gi|227828427|ref|YP_002830207.1|	-	0.033	14.8	0.0	0.045	14.4	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Phage_rep_org_N	PF09681.10	gi|227828427|ref|YP_002830207.1|	-	0.049	13.6	0.1	0.15	12.0	0.0	1.7	1	1	1	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_28	PF13518.6	gi|227828427|ref|YP_002830207.1|	-	0.067	13.3	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
BLACT_WH	PF17778.1	gi|227828427|ref|YP_002830207.1|	-	0.088	12.8	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
Mrr_N	PF14338.6	gi|227828427|ref|YP_002830207.1|	-	0.12	12.6	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	Mrr	N-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|227828428|ref|YP_002830208.1|	-	2.6e-31	108.3	0.0	3.6e-31	107.9	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|227828428|ref|YP_002830208.1|	-	3e-18	65.8	0.0	3.6e-18	65.5	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
IlvN	PF07991.12	gi|227828428|ref|YP_002830208.1|	-	0.059	12.9	0.1	0.88	9.1	0.0	2.2	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_7	PF13241.6	gi|227828428|ref|YP_002830208.1|	-	0.076	13.5	0.3	1.2	9.7	0.1	2.4	2	1	0	2	2	2	0	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|227828428|ref|YP_002830208.1|	-	0.24	10.7	1.2	0.93	8.8	1.2	1.8	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF2299	PF10061.9	gi|227828429|ref|YP_002830209.1|	-	1.3e-45	154.6	0.0	1.4e-45	154.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
AA_permease_2	PF13520.6	gi|227828431|ref|YP_002830211.1|	-	1.6e-17	63.5	45.9	1.6e-17	63.5	45.9	2.0	1	1	1	2	2	2	2	Amino	acid	permease
AA_permease	PF00324.21	gi|227828431|ref|YP_002830211.1|	-	2.4e-15	56.1	42.8	2.4e-15	56.1	42.8	1.8	2	1	0	2	2	2	1	Amino	acid	permease
DUF3899	PF13038.6	gi|227828431|ref|YP_002830211.1|	-	0.091	13.3	0.2	0.091	13.3	0.2	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3899)
Usp	PF00582.26	gi|227828432|ref|YP_002830212.1|	-	9.4e-27	94.2	0.2	1.1e-26	94.1	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
PrpR_N	PF06506.11	gi|227828432|ref|YP_002830212.1|	-	0.029	14.0	0.3	0.046	13.3	0.2	1.4	1	1	0	1	1	1	0	Propionate	catabolism	activator
DUF1666	PF07891.12	gi|227828432|ref|YP_002830212.1|	-	0.049	13.3	0.0	0.059	13.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1666)
SapB_1	PF05184.15	gi|227828432|ref|YP_002830212.1|	-	0.13	12.3	1.5	0.44	10.6	0.2	2.2	2	0	0	2	2	2	0	Saposin-like	type	B,	region	1
Pkinase	PF00069.25	gi|227828433|ref|YP_002830213.1|	-	1.3e-30	106.7	0.0	1.8e-30	106.2	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|227828433|ref|YP_002830213.1|	-	4e-09	36.2	0.0	8.7e-09	35.0	0.0	1.6	1	1	0	1	1	1	1	Protein	tyrosine	kinase
Ndc80_HEC	PF03801.13	gi|227828433|ref|YP_002830213.1|	-	0.046	13.4	0.2	0.082	12.5	0.2	1.3	1	0	0	1	1	1	0	HEC/Ndc80p	family
DUF1955	PF09205.10	gi|227828433|ref|YP_002830213.1|	-	0.69	9.6	9.6	3.7	7.3	9.5	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1955)
Sugar_tr	PF00083.24	gi|227828435|ref|YP_002830215.1|	-	1.3e-50	172.6	21.1	1.7e-50	172.2	21.1	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227828435|ref|YP_002830215.1|	-	9.8e-29	100.4	34.7	3.5e-24	85.4	30.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.20	gi|227828435|ref|YP_002830215.1|	-	0.011	14.1	4.5	0.0088	14.4	2.1	2.0	1	1	1	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
BT1	PF03092.16	gi|227828435|ref|YP_002830215.1|	-	0.14	10.3	6.3	0.089	11.0	1.4	2.3	2	0	0	2	2	2	0	BT1	family
ATP-cone	PF03477.16	gi|227828437|ref|YP_002830217.1|	-	7.8e-05	23.2	0.5	9.3e-05	22.9	0.5	1.2	1	0	0	1	1	1	1	ATP	cone	domain
Imm51	PF15595.6	gi|227828439|ref|YP_002830219.1|	-	0.0071	16.3	0.3	0.015	15.2	0.3	1.5	1	0	0	1	1	1	1	Immunity	protein	51
Tudor_3	PF18115.1	gi|227828439|ref|YP_002830219.1|	-	0.027	14.3	0.0	0.06	13.2	0.0	1.5	1	0	0	1	1	1	0	DNA	repair	protein	Crb2	Tudor	domain
T4BSS_DotI_IcmL	PF11393.8	gi|227828439|ref|YP_002830219.1|	-	0.075	12.5	0.2	0.15	11.5	0.2	1.4	1	0	0	1	1	1	0	Type-IV	b	secretion	system,	inner-membrane	complex	component
HTH_23	PF13384.6	gi|227828440|ref|YP_002830220.1|	-	4.7e-10	39.0	0.0	7.8e-10	38.3	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|227828440|ref|YP_002830220.1|	-	8.5e-09	35.3	0.0	1.3e-08	34.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|227828440|ref|YP_002830220.1|	-	3.4e-08	33.5	0.0	7.9e-08	32.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_32	PF13565.6	gi|227828440|ref|YP_002830220.1|	-	3.9e-08	33.8	0.4	8.3e-08	32.7	0.4	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|227828440|ref|YP_002830220.1|	-	7.8e-08	31.9	1.4	1e-07	31.5	0.1	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
LZ_Tnp_IS481	PF13011.6	gi|227828440|ref|YP_002830220.1|	-	4.7e-06	27.0	0.0	9.7e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
Terminase_5	PF06056.12	gi|227828440|ref|YP_002830220.1|	-	0.0013	18.6	0.0	0.0036	17.2	0.0	1.7	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
Sigma70_r4_2	PF08281.12	gi|227828440|ref|YP_002830220.1|	-	0.0053	16.4	0.0	0.01	15.5	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
DDE_3	PF13358.6	gi|227828441|ref|YP_002830221.1|	-	9.2e-08	32.0	0.0	1e-07	31.8	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
PIN	PF01850.21	gi|227828442|ref|YP_002830222.1|	-	2.3e-07	31.4	0.7	2.9e-07	31.0	0.7	1.2	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|227828442|ref|YP_002830222.1|	-	0.0022	18.7	0.0	0.0036	18.0	0.0	1.4	1	1	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|227828443|ref|YP_002830223.1|	-	2.1e-13	49.9	0.1	2.8e-13	49.5	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|227828443|ref|YP_002830223.1|	-	1.8e-06	28.3	0.1	1.9e-06	28.2	0.1	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
SymE_toxin	PF08845.10	gi|227828443|ref|YP_002830223.1|	-	0.0064	16.5	0.1	0.01	15.9	0.1	1.3	1	0	0	1	1	1	1	Toxin	SymE,	type	I	toxin-antitoxin	system
Rap1-DNA-bind	PF09197.10	gi|227828444|ref|YP_002830224.1|	-	0.0041	17.7	0.3	0.005	17.4	0.3	1.1	1	0	0	1	1	1	1	Rap1,	DNA-binding
EH_Signature	PF15611.6	gi|227828444|ref|YP_002830224.1|	-	0.022	14.2	0.1	0.025	14.0	0.1	1.0	1	0	0	1	1	1	0	EH_Signature	domain
Post_transc_reg	PF13797.6	gi|227828444|ref|YP_002830224.1|	-	0.18	11.7	5.4	0.49	10.3	5.4	1.8	1	1	0	1	1	1	0	Post-transcriptional	regulator
RHH_1	PF01402.21	gi|227828444|ref|YP_002830224.1|	-	0.33	10.9	0.4	0.33	10.9	0.4	3.2	4	0	0	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
PIN	PF01850.21	gi|227828445|ref|YP_002830225.1|	-	5.1e-08	33.5	0.0	5.8e-08	33.3	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
TrbL	PF04610.14	gi|227828446|ref|YP_002830226.1|	-	0.04	13.7	5.8	0.13	12.0	5.8	1.7	1	1	0	1	1	1	0	TrbL/VirB6	plasmid	conjugal	transfer	protein
VMA21	PF09446.10	gi|227828446|ref|YP_002830226.1|	-	0.3	11.2	6.8	0.69	10.1	0.5	2.3	1	1	1	2	2	2	0	VMA21-like	domain
DUF2207	PF09972.9	gi|227828446|ref|YP_002830226.1|	-	0.75	8.5	4.7	1.1	7.9	4.3	1.4	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
DEDD_Tnp_IS110	PF01548.17	gi|227828447|ref|YP_002830227.1|	-	0.018	15.0	0.0	0.02	14.8	0.0	1.1	1	0	0	1	1	1	0	Transposase
HxlR	PF01638.17	gi|227828448|ref|YP_002830228.1|	-	6.1e-22	77.3	0.4	8.1e-22	76.9	0.4	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|227828448|ref|YP_002830228.1|	-	0.00036	20.6	0.1	0.00061	19.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|227828448|ref|YP_002830228.1|	-	0.0014	18.4	0.1	0.0028	17.5	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|227828448|ref|YP_002830228.1|	-	0.0016	18.3	0.1	0.0037	17.2	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_36	PF13730.6	gi|227828448|ref|YP_002830228.1|	-	0.0036	17.2	0.3	0.0096	15.9	0.2	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|227828448|ref|YP_002830228.1|	-	0.0087	16.0	0.2	0.014	15.4	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF505	PF04458.12	gi|227828448|ref|YP_002830228.1|	-	0.0099	14.3	0.2	0.011	14.1	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_24	PF13412.6	gi|227828448|ref|YP_002830228.1|	-	0.012	15.2	0.0	0.022	14.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|227828448|ref|YP_002830228.1|	-	0.016	15.3	0.0	0.047	13.8	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|227828448|ref|YP_002830228.1|	-	0.018	15.0	0.1	0.027	14.4	0.1	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_Crp_2	PF13545.6	gi|227828448|ref|YP_002830228.1|	-	0.042	13.8	0.1	0.085	12.8	0.1	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|227828448|ref|YP_002830228.1|	-	0.065	13.1	0.1	0.099	12.5	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.16	gi|227828448|ref|YP_002830228.1|	-	0.069	12.9	0.1	0.13	12.1	0.1	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
RTP	PF02334.16	gi|227828448|ref|YP_002830228.1|	-	0.072	13.7	0.1	0.092	13.4	0.1	1.2	1	0	0	1	1	1	0	Replication	terminator	protein
PolyA_pol_RNAbd	PF12627.7	gi|227828448|ref|YP_002830228.1|	-	0.12	12.2	1.0	0.99	9.2	0.1	2.2	2	0	0	2	2	2	0	Probable	RNA	and	SrmB-	binding	site	of	polymerase	A
MarR_2	PF12802.7	gi|227828448|ref|YP_002830228.1|	-	0.18	11.7	0.0	0.33	10.9	0.0	1.5	1	0	0	1	1	1	0	MarR	family
CBS	PF00571.28	gi|227828450|ref|YP_002830230.1|	-	5.7e-30	103.5	3.5	2.6e-15	56.6	0.7	2.0	2	0	0	2	2	2	2	CBS	domain
IF3_N	PF05198.16	gi|227828450|ref|YP_002830230.1|	-	3.5e-05	24.0	4.3	0.008	16.4	0.4	3.3	2	2	1	3	3	3	3	Translation	initiation	factor	IF-3,	N-terminal	domain
NUMOD1	PF07453.13	gi|227828450|ref|YP_002830230.1|	-	0.11	12.8	0.7	19	5.7	0.1	2.3	2	0	0	2	2	2	0	NUMOD1	domain
TrmO	PF01980.16	gi|227828451|ref|YP_002830231.1|	-	2.7e-29	101.8	0.0	3.6e-29	101.4	0.0	1.1	1	0	0	1	1	1	1	tRNA-methyltransferase	O
ABC_tran	PF00005.27	gi|227828452|ref|YP_002830232.1|	-	5.7e-24	85.2	0.1	8.5e-24	84.6	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828452|ref|YP_002830232.1|	-	2e-12	47.6	0.0	1.7e-07	31.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
NB-ARC	PF00931.22	gi|227828452|ref|YP_002830232.1|	-	0.0018	17.5	0.3	0.022	13.9	0.3	2.0	1	1	0	1	1	1	1	NB-ARC	domain
SMC_N	PF02463.19	gi|227828452|ref|YP_002830232.1|	-	0.0022	17.5	0.1	0.17	11.3	0.1	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|227828452|ref|YP_002830232.1|	-	0.0067	16.2	0.0	0.15	11.7	0.0	2.2	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227828452|ref|YP_002830232.1|	-	0.0089	16.5	0.1	0.022	15.2	0.1	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|227828452|ref|YP_002830232.1|	-	0.014	15.9	0.4	0.03	14.8	0.4	1.5	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|227828452|ref|YP_002830232.1|	-	0.017	15.0	0.3	0.035	14.0	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA_13	PF13166.6	gi|227828452|ref|YP_002830232.1|	-	0.026	13.2	0.1	0.041	12.5	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|227828452|ref|YP_002830232.1|	-	0.032	14.2	0.1	0.061	13.3	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_16	PF13191.6	gi|227828452|ref|YP_002830232.1|	-	0.032	14.6	0.0	0.043	14.2	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227828452|ref|YP_002830232.1|	-	0.037	14.3	0.1	0.093	13.0	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|227828452|ref|YP_002830232.1|	-	0.038	13.7	0.0	0.072	12.8	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
IstB_IS21	PF01695.17	gi|227828452|ref|YP_002830232.1|	-	0.044	13.5	0.0	0.099	12.4	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|227828452|ref|YP_002830232.1|	-	0.1	12.4	0.1	0.18	11.6	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MukB	PF04310.12	gi|227828452|ref|YP_002830232.1|	-	0.1	12.4	0.1	0.19	11.5	0.1	1.4	1	0	0	1	1	1	0	MukB	N-terminal
NACHT	PF05729.12	gi|227828452|ref|YP_002830232.1|	-	0.14	12.0	0.3	0.9	9.4	0.1	2.1	2	0	0	2	2	2	0	NACHT	domain
ABC2_membrane_3	PF12698.7	gi|227828453|ref|YP_002830233.1|	-	3.5e-05	23.1	30.5	3.5e-05	23.1	30.5	1.5	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|227828453|ref|YP_002830233.1|	-	4.2e-05	23.1	24.0	4.2e-05	23.1	24.0	2.3	1	1	1	2	2	2	1	ABC-2	type	transporter
zf-ribbon_3	PF13248.6	gi|227828454|ref|YP_002830234.1|	-	5.7e-06	25.5	1.9	0.062	12.7	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
UPF0547	PF10571.9	gi|227828454|ref|YP_002830234.1|	-	5.1e-05	23.2	3.1	0.0025	17.8	0.1	2.3	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.12	gi|227828454|ref|YP_002830234.1|	-	0.00013	21.4	1.9	0.3	10.6	0.1	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|227828454|ref|YP_002830234.1|	-	0.00013	21.8	1.7	0.00023	21.0	1.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227828454|ref|YP_002830234.1|	-	0.00018	21.6	0.4	0.00037	20.5	0.4	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|227828454|ref|YP_002830234.1|	-	0.00038	20.1	4.1	0.15	11.8	0.4	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|227828454|ref|YP_002830234.1|	-	0.0005	19.9	0.9	0.00084	19.2	0.9	1.5	1	1	0	1	1	1	1	Nudix	N-terminal
DZR	PF12773.7	gi|227828454|ref|YP_002830234.1|	-	0.00069	19.6	0.3	0.001	19.0	0.3	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-tcix	PF14952.6	gi|227828454|ref|YP_002830234.1|	-	0.0022	17.6	5.0	0.069	12.8	0.1	2.2	2	0	0	2	2	2	1	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-H2C2_2	PF13465.6	gi|227828454|ref|YP_002830234.1|	-	0.0029	18.0	1.8	0.62	10.6	0.1	2.3	2	0	0	2	2	2	1	Zinc-finger	double	domain
YhfH	PF14149.6	gi|227828454|ref|YP_002830234.1|	-	0.0032	17.4	4.4	0.3	11.1	0.3	2.2	1	1	1	2	2	2	2	YhfH-like	protein
TackOD1	PF18551.1	gi|227828454|ref|YP_002830234.1|	-	0.0066	16.1	0.4	0.0066	16.1	0.4	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
Lar_restr_allev	PF14354.6	gi|227828454|ref|YP_002830234.1|	-	0.0092	16.3	0.4	0.013	15.9	0.4	1.3	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf_UBZ	PF18439.1	gi|227828454|ref|YP_002830234.1|	-	0.0097	15.5	0.9	0.34	10.5	0.1	2.2	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zf-TFIIB	PF13453.6	gi|227828454|ref|YP_002830234.1|	-	0.0099	15.2	0.9	0.018	14.4	0.9	1.5	1	1	0	1	1	1	1	Transcription	factor	zinc-finger
zf-C4_Topoisom	PF01396.19	gi|227828454|ref|YP_002830234.1|	-	0.01	15.6	1.9	1.5	8.6	0.2	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF2387	PF09526.10	gi|227828454|ref|YP_002830234.1|	-	0.012	15.7	1.0	0.013	15.7	1.0	1.2	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
OrfB_Zn_ribbon	PF07282.11	gi|227828454|ref|YP_002830234.1|	-	0.013	15.4	2.3	0.019	14.9	1.5	1.6	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
ADK_lid	PF05191.14	gi|227828454|ref|YP_002830234.1|	-	0.015	15.3	5.5	0.038	14.0	4.6	2.0	1	1	1	2	2	2	0	Adenylate	kinase,	active	site	lid
IBR	PF01485.21	gi|227828454|ref|YP_002830234.1|	-	0.015	15.5	1.9	0.038	14.2	1.8	1.6	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
DUF35_N	PF12172.8	gi|227828454|ref|YP_002830234.1|	-	0.016	15.1	2.5	2.5	8.1	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
RNA_POL_M_15KD	PF02150.16	gi|227828454|ref|YP_002830234.1|	-	0.02	14.8	1.6	0.055	13.4	1.6	1.8	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
zf-NADH-PPase	PF09297.11	gi|227828454|ref|YP_002830234.1|	-	0.023	14.3	0.4	3.9	7.2	0.0	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
FYDLN_acid	PF09538.10	gi|227828454|ref|YP_002830234.1|	-	0.025	15.3	0.8	1.6	9.4	0.8	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
Zn_Tnp_IS1595	PF12760.7	gi|227828454|ref|YP_002830234.1|	-	0.028	14.4	5.1	1.1	9.3	0.6	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|227828454|ref|YP_002830234.1|	-	0.034	13.9	0.6	3.4	7.5	0.1	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Elf1	PF05129.13	gi|227828454|ref|YP_002830234.1|	-	0.036	14.1	0.7	0.047	13.7	0.7	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-LITAF-like	PF10601.9	gi|227828454|ref|YP_002830234.1|	-	0.039	14.2	3.1	3.3	8.0	0.2	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
DUF2072	PF09845.9	gi|227828454|ref|YP_002830234.1|	-	0.047	13.9	1.5	0.072	13.3	1.5	1.4	1	1	0	1	1	1	0	Zn-ribbon	containing	protein
zf_Rg	PF17915.1	gi|227828454|ref|YP_002830234.1|	-	0.053	12.9	0.8	1.4	8.4	0.1	2.2	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
HypA	PF01155.19	gi|227828454|ref|YP_002830234.1|	-	0.054	13.5	0.2	0.06	13.4	0.2	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PADR1	PF08063.12	gi|227828454|ref|YP_002830234.1|	-	0.075	12.8	0.9	2.3	8.1	0.1	2.1	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
YacG	PF03884.14	gi|227828454|ref|YP_002830234.1|	-	0.081	12.7	0.9	3.3	7.5	0.1	2.4	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
Methyltransf_13	PF08421.11	gi|227828454|ref|YP_002830234.1|	-	0.082	13.2	0.7	0.56	10.5	0.0	2.3	1	1	2	3	3	3	0	Putative	zinc	binding	domain
zinc_ribbon_9	PF14369.6	gi|227828454|ref|YP_002830234.1|	-	0.083	13.2	4.4	0.87	9.9	4.6	2.1	1	1	1	2	2	2	0	zinc-ribbon
DUF1610	PF07754.11	gi|227828454|ref|YP_002830234.1|	-	0.086	12.8	9.0	1	9.4	1.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
CpXC	PF14353.6	gi|227828454|ref|YP_002830234.1|	-	0.089	12.8	2.3	3	7.9	2.3	2.2	1	1	0	1	1	1	0	CpXC	protein
Auto_anti-p27	PF06677.12	gi|227828454|ref|YP_002830234.1|	-	0.1	12.8	2.4	2	8.7	3.7	2.0	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ACC	PF17848.1	gi|227828454|ref|YP_002830234.1|	-	0.1	12.7	3.5	5.5	7.2	0.4	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-C2H2_4	PF13894.6	gi|227828454|ref|YP_002830234.1|	-	0.12	13.2	0.9	21	6.3	0.1	2.6	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ISL3	PF14690.6	gi|227828454|ref|YP_002830234.1|	-	0.13	13.0	6.3	0.74	10.5	0.9	2.3	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PknG_rubred	PF16919.5	gi|227828454|ref|YP_002830234.1|	-	0.13	12.4	0.6	0.17	12.1	0.5	1.3	1	1	0	1	1	1	0	Protein	kinase	G	rubredoxin	domain
zf-RING_7	PF02591.15	gi|227828454|ref|YP_002830234.1|	-	0.13	12.4	1.7	2.4	8.4	0.2	2.2	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-Mss51	PF13824.6	gi|227828454|ref|YP_002830234.1|	-	0.13	12.3	3.0	7.9	6.7	3.2	2.3	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF983	PF06170.12	gi|227828454|ref|YP_002830234.1|	-	0.18	12.3	0.1	5.1	7.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF983)
Cys_rich_CPXG	PF14255.6	gi|227828454|ref|YP_002830234.1|	-	0.24	11.4	2.9	3.1	7.8	2.8	2.1	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
zf-C2H2	PF00096.26	gi|227828454|ref|YP_002830234.1|	-	0.25	11.9	6.4	3.3	8.4	0.8	2.6	2	1	0	2	2	2	0	Zinc	finger,	C2H2	type
zf_C2H2_10	PF18414.1	gi|227828454|ref|YP_002830234.1|	-	0.25	10.9	4.8	2	8.0	0.3	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
zf-IS66	PF13005.7	gi|227828454|ref|YP_002830234.1|	-	0.29	11.6	4.8	2.2	8.7	0.3	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-C2H2_3	PF13878.6	gi|227828454|ref|YP_002830234.1|	-	0.45	10.4	2.4	6.9	6.6	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
TFIIS_C	PF01096.18	gi|227828454|ref|YP_002830234.1|	-	0.55	10.1	3.5	14	5.7	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf_C2H2_13	PF18508.1	gi|227828454|ref|YP_002830234.1|	-	0.89	9.2	4.1	0.5	10.0	1.3	2.1	1	1	1	2	2	2	0	Zinc	finger	domain
Ogr_Delta	PF04606.12	gi|227828454|ref|YP_002830234.1|	-	1.3	9.1	5.1	54	3.9	5.1	2.3	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
Integrase_Zn	PF02022.19	gi|227828454|ref|YP_002830234.1|	-	3.3	7.8	4.6	6.2	6.9	0.3	2.4	2	0	0	2	2	2	0	Integrase	Zinc	binding	domain
Zn-C2H2_12	PF18112.1	gi|227828454|ref|YP_002830234.1|	-	4.8	7.7	10.7	2.4	8.7	0.5	3.2	3	0	0	3	3	3	0	Autophagy	receptor	zinc	finger-C2H2	domain
Mu-like_Com	PF10122.9	gi|227828454|ref|YP_002830234.1|	-	7.5	6.1	6.7	11	5.6	1.0	2.5	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
Ribosomal_S27	PF01599.19	gi|227828454|ref|YP_002830234.1|	-	9.7	6.5	7.9	14	6.0	1.0	2.4	1	1	1	2	2	2	0	Ribosomal	protein	S27a
NUDIX	PF00293.28	gi|227828456|ref|YP_002830236.1|	-	2.1e-18	66.6	0.0	2.7e-18	66.3	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.6	gi|227828456|ref|YP_002830236.1|	-	0.0038	17.2	0.0	0.0057	16.6	0.0	1.3	1	0	0	1	1	1	1	NUDIX	domain
Phage-A118_gp45	PF10653.9	gi|227828457|ref|YP_002830237.1|	-	0.085	12.9	3.7	4.6	7.3	0.2	3.5	3	0	0	3	3	3	0	Protein	gp45	of	Bacteriophage	A118
FAD_binding_4	PF01565.23	gi|227828460|ref|YP_002830240.1|	-	7.5e-22	77.6	0.0	1.3e-21	76.8	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.19	gi|227828460|ref|YP_002830240.1|	-	0.023	14.3	0.0	0.038	13.6	0.0	1.3	1	0	0	1	1	1	0	FAD	linked	oxidases,	C-terminal	domain
BBE	PF08031.12	gi|227828460|ref|YP_002830240.1|	-	0.044	13.9	0.0	0.098	12.8	0.0	1.6	1	0	0	1	1	1	0	Berberine	and	berberine	like
FAD-oxidase_C	PF02913.19	gi|227828461|ref|YP_002830241.1|	-	4e-62	210.1	0.0	5.3e-62	209.7	0.0	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|227828461|ref|YP_002830241.1|	-	1.4e-33	115.6	0.0	3.1e-33	114.4	0.0	1.6	2	0	0	2	2	2	1	FAD	binding	domain
Fer4_7	PF12838.7	gi|227828462|ref|YP_002830242.1|	-	4.1e-11	43.3	9.0	9e-11	42.2	9.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|227828462|ref|YP_002830242.1|	-	8.6e-11	41.9	6.9	6.9e-06	26.2	0.0	2.9	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_17	PF13534.6	gi|227828462|ref|YP_002830242.1|	-	2.5e-10	40.7	6.4	2.5e-10	40.7	6.4	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227828462|ref|YP_002830242.1|	-	7.4e-10	39.1	7.1	7.4e-10	39.1	7.1	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828462|ref|YP_002830242.1|	-	6.4e-08	32.1	11.2	0.0005	19.8	1.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|227828462|ref|YP_002830242.1|	-	4.5e-06	26.7	10.0	9.9e-05	22.4	11.0	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828462|ref|YP_002830242.1|	-	5.3e-06	26.2	13.5	0.0026	17.7	2.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|227828462|ref|YP_002830242.1|	-	1.4e-05	25.1	7.9	6.9e-05	22.9	8.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828462|ref|YP_002830242.1|	-	0.00022	21.2	12.7	0.0099	15.9	1.8	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|227828462|ref|YP_002830242.1|	-	0.0003	21.6	9.9	0.029	15.3	10.4	2.9	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|227828462|ref|YP_002830242.1|	-	0.0012	19.1	11.4	0.062	13.8	2.1	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828462|ref|YP_002830242.1|	-	0.024	14.7	12.1	0.28	11.3	12.2	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
DUF309	PF03745.14	gi|227828462|ref|YP_002830242.1|	-	0.038	13.7	0.0	0.079	12.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF309)
Fer4_3	PF12798.7	gi|227828462|ref|YP_002830242.1|	-	0.12	13.4	17.6	0.89	10.6	4.7	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227828462|ref|YP_002830242.1|	-	0.13	12.5	7.8	0.85	9.8	0.9	2.5	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|227828462|ref|YP_002830242.1|	-	0.56	10.8	8.6	6.1	7.5	1.4	2.4	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_20	PF14691.6	gi|227828462|ref|YP_002830242.1|	-	0.68	9.7	5.9	0.66	9.8	0.2	2.8	3	0	0	3	3	3	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_15	PF13459.6	gi|227828462|ref|YP_002830242.1|	-	1.3	9.8	5.8	2.5	8.9	0.3	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
BPL_LplA_LipB	PF03099.19	gi|227828463|ref|YP_002830243.1|	-	1.3e-12	47.7	0.0	2.2e-12	47.0	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Radical_SAM	PF04055.21	gi|227828464|ref|YP_002830244.1|	-	7.3e-16	59.0	0.1	2.2e-15	57.4	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Biotin_lipoyl	PF00364.22	gi|227828465|ref|YP_002830245.1|	-	3.2e-13	49.3	3.2	4.1e-13	49.0	3.2	1.1	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|227828465|ref|YP_002830245.1|	-	8.3e-10	38.4	2.3	6.9e-05	22.6	0.1	2.1	1	1	1	2	2	2	2	Biotin-lipoyl	like
RnfC_N	PF13375.6	gi|227828465|ref|YP_002830245.1|	-	6.1e-05	22.9	0.2	0.00046	20.1	0.4	1.8	1	1	1	2	2	2	2	RnfC	Barrel	sandwich	hybrid	domain
QRPTase_N	PF02749.16	gi|227828465|ref|YP_002830245.1|	-	0.00063	19.7	0.1	0.57	10.3	0.0	2.1	1	1	1	2	2	2	2	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PTS_EIIA_1	PF00358.20	gi|227828465|ref|YP_002830245.1|	-	0.0021	17.8	0.2	0.79	9.5	0.0	2.0	1	1	1	2	2	2	2	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
GCV_H	PF01597.19	gi|227828465|ref|YP_002830245.1|	-	0.0041	17.0	0.4	0.0048	16.8	0.4	1.2	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
YonK	PF09642.10	gi|227828465|ref|YP_002830245.1|	-	0.0075	16.4	0.1	0.1	12.8	0.1	2.0	2	0	0	2	2	2	1	YonK	protein
PASTA	PF03793.19	gi|227828465|ref|YP_002830245.1|	-	0.0083	16.0	1.0	0.95	9.4	0.1	2.2	2	0	0	2	2	2	1	PASTA	domain
ATP-synt_ab_Xtn	PF16886.5	gi|227828465|ref|YP_002830245.1|	-	0.011	15.6	0.2	0.069	13.0	0.2	1.9	1	1	0	1	1	1	0	ATPsynthase	alpha/beta	subunit	N-term	extension
Peptidase_M23	PF01551.22	gi|227828465|ref|YP_002830245.1|	-	0.037	14.2	0.3	10	6.4	0.0	2.2	1	1	1	2	2	2	0	Peptidase	family	M23
DUF2118	PF09891.9	gi|227828465|ref|YP_002830245.1|	-	0.048	13.6	0.0	2.3	8.2	0.0	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
HlyD_D23	PF16576.5	gi|227828465|ref|YP_002830245.1|	-	0.096	11.9	0.2	4.4	6.5	0.0	2.0	1	1	1	2	2	2	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
BPL_LplA_LipB	PF03099.19	gi|227828466|ref|YP_002830246.1|	-	2.4e-05	24.2	0.1	4.6e-05	23.3	0.1	1.4	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
FMN_red	PF03358.15	gi|227828467|ref|YP_002830247.1|	-	4.2e-16	59.1	0.0	5.9e-16	58.6	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_5	PF12724.7	gi|227828467|ref|YP_002830247.1|	-	7.4e-05	23.0	0.0	0.00013	22.3	0.0	1.5	1	1	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_2	PF02525.17	gi|227828467|ref|YP_002830247.1|	-	0.00039	20.2	0.0	0.00059	19.6	0.0	1.4	1	0	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_1	PF00258.25	gi|227828467|ref|YP_002830247.1|	-	0.11	12.7	0.1	15	5.8	0.0	2.3	1	1	1	2	2	2	0	Flavodoxin
Cu	PF17563.2	gi|227828467|ref|YP_002830247.1|	-	2.5	8.4	6.1	7.9	6.8	0.7	3.1	2	2	0	2	2	2	0	Cupiennin
Paramyxo_ncap	PF00973.19	gi|227828468|ref|YP_002830248.1|	-	0.64	8.9	2.7	0.74	8.7	2.7	1.1	1	0	0	1	1	1	0	Paramyxovirus	nucleocapsid	protein
Holin_SPP1	PF04688.13	gi|227828468|ref|YP_002830248.1|	-	1.4	9.1	4.3	6.1	7.1	2.0	2.6	2	1	0	2	2	2	0	SPP1	phage	holin
DUF981	PF06168.11	gi|227828469|ref|YP_002830249.1|	-	4.5e-36	124.5	17.4	5.3e-36	124.3	17.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF981)
TssN	PF17555.2	gi|227828469|ref|YP_002830249.1|	-	4.5	6.6	13.1	6.6	6.0	13.1	1.3	1	1	0	1	1	1	0	Type	VI	secretion	system,	TssN
MFS_1	PF07690.16	gi|227828471|ref|YP_002830251.1|	-	2.7e-21	75.9	37.0	5.7e-12	45.2	14.9	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|227828471|ref|YP_002830251.1|	-	2.1e-05	23.6	14.4	0.00011	21.2	0.2	2.8	2	2	0	2	2	2	2	MFS_1	like	family
Pyr_redox_2	PF07992.14	gi|227828472|ref|YP_002830252.1|	-	2.2e-41	142.0	0.3	3.3e-41	141.5	0.3	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227828472|ref|YP_002830252.1|	-	3.4e-16	59.6	7.0	6.2e-16	58.7	0.8	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227828472|ref|YP_002830252.1|	-	3.2e-12	46.3	1.0	8.8e-12	44.9	0.1	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|227828472|ref|YP_002830252.1|	-	0.0024	17.8	0.1	0.0049	16.8	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.14	gi|227828472|ref|YP_002830252.1|	-	0.017	13.9	6.3	0.86	8.2	0.1	3.9	4	0	0	4	4	4	0	HI0933-like	protein
DAO	PF01266.24	gi|227828472|ref|YP_002830252.1|	-	0.03	13.9	10.3	0.22	11.1	0.0	3.4	3	1	1	4	4	4	0	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|227828472|ref|YP_002830252.1|	-	0.031	14.5	0.4	0.031	14.5	0.4	2.3	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
DFP	PF04127.15	gi|227828472|ref|YP_002830252.1|	-	0.095	12.5	0.1	0.28	11.0	0.1	1.9	1	1	1	2	2	2	0	DNA	/	pantothenate	metabolism	flavoprotein
NAD_Gly3P_dh_N	PF01210.23	gi|227828472|ref|YP_002830252.1|	-	0.11	12.5	0.0	0.31	11.0	0.0	1.9	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF2431	PF10354.9	gi|227828472|ref|YP_002830252.1|	-	0.14	12.4	0.0	0.22	11.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2431)
AlaDh_PNT_C	PF01262.21	gi|227828472|ref|YP_002830252.1|	-	0.28	10.4	1.9	12	5.1	0.3	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|227828472|ref|YP_002830252.1|	-	0.29	10.1	0.4	9.2	5.2	0.1	2.7	3	0	0	3	3	3	0	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|227828472|ref|YP_002830252.1|	-	0.54	9.4	2.8	0.77	8.9	0.5	2.2	2	1	1	3	3	3	0	FAD	binding	domain
GIDA	PF01134.22	gi|227828472|ref|YP_002830252.1|	-	0.86	8.6	8.2	2.7	7.0	0.5	3.1	2	1	1	3	3	3	0	Glucose	inhibited	division	protein	A
Acyl-CoA_dh_1	PF00441.24	gi|227828474|ref|YP_002830254.1|	-	1.6e-27	96.6	0.0	2.4e-27	96.0	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227828474|ref|YP_002830254.1|	-	6.4e-19	68.0	0.1	1e-18	67.3	0.1	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|227828474|ref|YP_002830254.1|	-	5e-10	39.8	0.0	1e-09	38.8	0.0	1.5	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|227828474|ref|YP_002830254.1|	-	2.6e-07	31.3	0.0	4.9e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
CoA_transf_3	PF02515.17	gi|227828475|ref|YP_002830255.1|	-	3.3e-97	325.9	0.0	3.9e-97	325.7	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
DUF2430	PF10353.9	gi|227828475|ref|YP_002830255.1|	-	0.027	14.8	0.1	0.068	13.6	0.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2430)
PHB_acc_N	PF07879.11	gi|227828475|ref|YP_002830255.1|	-	0.1	12.7	0.2	2.1	8.5	0.0	2.7	2	0	0	2	2	2	0	PHB/PHA	accumulation	regulator	DNA-binding	domain
Sugar_tr	PF00083.24	gi|227828476|ref|YP_002830256.1|	-	4.1e-36	124.8	24.4	4.7e-36	124.6	24.4	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227828476|ref|YP_002830256.1|	-	1e-29	103.6	50.2	1.2e-27	96.8	31.8	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PPR_1	PF12854.7	gi|227828476|ref|YP_002830256.1|	-	0.054	13.2	0.3	0.22	11.3	0.1	2.1	2	0	0	2	2	2	0	PPR	repeat
DUF3464	PF11947.8	gi|227828476|ref|YP_002830256.1|	-	0.18	11.6	0.7	0.42	10.4	0.7	1.6	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
PsbN	PF02468.15	gi|227828477|ref|YP_002830257.1|	-	2.4	8.1	4.6	6	6.8	4.6	1.7	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	N	protein	(psbN)
Wzz	PF02706.15	gi|227828479|ref|YP_002830259.1|	-	0.0092	16.3	0.4	0.0092	16.3	0.4	2.2	2	0	0	2	2	2	1	Chain	length	determinant	protein
Cu_amine_oxidN1	PF07833.11	gi|227828479|ref|YP_002830259.1|	-	3.6	8.2	5.3	4.5	7.8	0.1	3.5	4	1	0	4	4	4	0	Copper	amine	oxidase	N-terminal	domain
DUF3139	PF11337.8	gi|227828480|ref|YP_002830260.1|	-	0.019	15.6	4.9	0.019	15.6	4.9	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3139)
Baculo_11_kDa	PF06143.11	gi|227828480|ref|YP_002830260.1|	-	0.63	9.7	5.6	1.6	8.4	5.6	1.7	1	0	0	1	1	1	0	Baculovirus	11	kDa	family
MaoC_dehydratas	PF01575.19	gi|227828482|ref|YP_002830262.1|	-	1.3e-16	60.3	0.0	1.8e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|227828482|ref|YP_002830262.1|	-	0.0041	17.3	0.0	0.0071	16.5	0.0	1.6	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.22	gi|227828482|ref|YP_002830262.1|	-	0.0073	16.6	0.0	0.012	15.9	0.0	1.4	1	0	0	1	1	1	1	Thioesterase	superfamily
FabA	PF07977.13	gi|227828482|ref|YP_002830262.1|	-	0.023	14.3	0.0	0.046	13.3	0.0	1.5	1	1	1	2	2	2	0	FabA-like	domain
MazE_antitoxin	PF04014.18	gi|227828483|ref|YP_002830263.1|	-	3.4e-11	42.8	0.7	5.9e-11	42.0	0.7	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF104	PF01954.16	gi|227828483|ref|YP_002830263.1|	-	0.012	16.1	0.8	0.017	15.6	0.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF104
Methyltrans_RNA	PF04452.14	gi|227828483|ref|YP_002830263.1|	-	0.019	14.3	0.1	0.022	14.1	0.1	1.0	1	0	0	1	1	1	0	RNA	methyltransferase
PIN	PF01850.21	gi|227828484|ref|YP_002830264.1|	-	5.6e-13	49.5	0.2	6.7e-13	49.2	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
DUF5615	PF18480.1	gi|227828484|ref|YP_002830264.1|	-	0.14	11.9	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
DUF883	PF05957.13	gi|227828485|ref|YP_002830265.1|	-	0.0075	16.8	0.6	0.0086	16.7	0.6	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF883)
Vps53_N	PF04100.12	gi|227828485|ref|YP_002830265.1|	-	0.023	13.6	0.6	0.025	13.6	0.6	1.1	1	0	0	1	1	1	0	Vps53-like,	N-terminal
MT0933_antitox	PF14013.6	gi|227828485|ref|YP_002830265.1|	-	0.041	14.2	0.8	0.58	10.5	0.0	2.3	2	1	0	2	2	2	0	MT0933-like	antitoxin	protein
Laminin_I	PF06008.14	gi|227828485|ref|YP_002830265.1|	-	0.056	13.1	1.4	0.1	12.3	1.4	1.6	1	1	0	1	1	1	0	Laminin	Domain	I
CAP_N	PF01213.19	gi|227828485|ref|YP_002830265.1|	-	0.069	12.6	0.1	0.073	12.5	0.1	1.0	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
PRP9_N	PF16958.5	gi|227828485|ref|YP_002830265.1|	-	0.07	13.2	1.0	0.085	12.9	1.0	1.2	1	0	0	1	1	1	0	Pre-mRNA-splicing	factor	PRP9	N-terminus
RNase_J_C	PF17770.1	gi|227828485|ref|YP_002830265.1|	-	0.087	13.9	0.6	0.14	13.2	0.5	1.4	1	1	0	1	1	1	0	Ribonuclease	J	C-terminal	domain
YkyA	PF10368.9	gi|227828485|ref|YP_002830265.1|	-	0.11	12.2	3.3	0.11	12.1	3.3	1.0	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
SpmSyn_N	PF17950.1	gi|227828485|ref|YP_002830265.1|	-	0.25	11.5	2.7	0.47	10.7	0.7	2.2	1	1	2	3	3	3	0	S-adenosylmethionine	decarboxylase	N	-terminal
Lactamase_B	PF00753.27	gi|227828486|ref|YP_002830266.1|	-	4.3e-31	108.5	0.0	4.9e-31	108.3	0.0	1.0	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227828486|ref|YP_002830266.1|	-	4e-05	23.2	0.0	5.3e-05	22.8	0.0	1.2	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
CCG	PF02754.16	gi|227828487|ref|YP_002830267.1|	-	1.2e-10	41.5	0.0	4.5e-07	30.0	0.1	2.9	3	0	0	3	3	3	2	Cysteine-rich	domain
LUD_dom	PF02589.15	gi|227828488|ref|YP_002830268.1|	-	8.1e-51	172.4	0.1	1.2e-50	171.8	0.1	1.3	1	0	0	1	1	1	1	LUD	domain
Fer4_8	PF13183.6	gi|227828488|ref|YP_002830268.1|	-	1.2e-11	44.9	0.9	2.1e-11	44.1	0.9	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828488|ref|YP_002830268.1|	-	6.1e-07	29.9	2.3	1.7e-06	28.5	2.4	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828488|ref|YP_002830268.1|	-	1.1e-05	25.9	2.5	2.5e-05	24.8	2.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828488|ref|YP_002830268.1|	-	1.2e-05	25.3	7.0	0.0037	17.4	7.9	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828488|ref|YP_002830268.1|	-	0.00011	22.3	0.6	0.083	13.1	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|227828488|ref|YP_002830268.1|	-	0.001	18.8	1.7	0.17	11.7	0.1	2.4	2	0	0	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_2	PF12797.7	gi|227828488|ref|YP_002830268.1|	-	0.0017	18.4	7.9	0.11	12.6	2.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|227828488|ref|YP_002830268.1|	-	0.0022	17.7	8.7	0.0086	15.9	1.8	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|227828488|ref|YP_002830268.1|	-	0.0099	15.9	7.6	0.012	15.7	1.6	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227828488|ref|YP_002830268.1|	-	0.18	12.0	1.1	4.9	7.4	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227828488|ref|YP_002830268.1|	-	0.23	11.6	6.8	3.3	7.9	6.8	2.3	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828488|ref|YP_002830268.1|	-	0.35	11.8	10.0	5.2	8.1	8.7	2.7	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_22	PF17179.4	gi|227828488|ref|YP_002830268.1|	-	1.3	9.9	6.3	1.4	9.9	0.7	2.6	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227828488|ref|YP_002830268.1|	-	1.4	9.7	7.0	1.1	9.9	1.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
MFS_1	PF07690.16	gi|227828489|ref|YP_002830269.1|	-	3.6e-47	161.0	84.6	1.3e-41	142.7	49.6	2.6	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227828489|ref|YP_002830269.1|	-	3.8e-10	39.2	4.3	3.8e-10	39.2	4.3	2.8	3	0	0	3	3	3	2	Sugar	(and	other)	transporter
Raffinose_syn	PF05691.12	gi|227828490|ref|YP_002830270.1|	-	5.1e-45	153.5	5.1	1.6e-25	89.1	0.3	3.1	1	1	1	3	3	3	3	Raffinose	synthase	or	seed	imbibition	protein	Sip1
Melibiase_2	PF16499.5	gi|227828490|ref|YP_002830270.1|	-	0.0012	18.1	0.0	0.0022	17.3	0.0	1.4	1	0	0	1	1	1	1	Alpha	galactosidase	A
HD	PF01966.22	gi|227828491|ref|YP_002830271.1|	-	3.2e-12	46.7	0.2	1e-11	45.1	0.1	1.9	2	0	0	2	2	2	1	HD	domain
HDOD	PF08668.12	gi|227828491|ref|YP_002830271.1|	-	0.027	13.9	0.0	0.051	13.1	0.0	1.4	1	0	0	1	1	1	0	HDOD	domain
MR_MLE_C	PF13378.6	gi|227828492|ref|YP_002830272.1|	-	1.7e-63	214.2	0.0	8e-63	211.9	0.0	1.8	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227828492|ref|YP_002830272.1|	-	7.7e-19	68.0	0.0	1.6e-18	67.0	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Cdd1	PF11731.8	gi|227828493|ref|YP_002830273.1|	-	0.15	12.3	0.0	0.43	10.8	0.0	1.8	1	0	0	1	1	1	0	Pathogenicity	locus
Sugar_tr	PF00083.24	gi|227828494|ref|YP_002830274.1|	-	9.5e-28	97.2	38.1	7.5e-21	74.5	13.4	2.0	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227828494|ref|YP_002830274.1|	-	3.2e-23	82.2	53.4	3.2e-23	82.2	53.4	1.9	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227828495|ref|YP_002830275.1|	-	1e-20	74.1	25.6	1.4e-20	73.6	25.6	1.2	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|227828495|ref|YP_002830275.1|	-	1.7e-20	73.3	45.9	1.7e-20	73.3	45.9	1.6	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
SLATT_6	PF18169.1	gi|227828495|ref|YP_002830275.1|	-	8.8	5.9	10.2	1.7	8.2	0.3	2.8	3	1	0	3	3	3	0	SMODS	and	SLOG-associating	2TM	effector	domain	6
FAA_hydrolase	PF01557.18	gi|227828496|ref|YP_002830276.1|	-	3e-26	92.4	0.0	1.8e-25	89.9	0.0	1.9	1	1	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|227828496|ref|YP_002830276.1|	-	0.13	13.1	0.0	0.43	11.5	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2437)
Aldedh	PF00171.22	gi|227828497|ref|YP_002830277.1|	-	1.6e-166	554.4	0.0	1.8e-166	554.2	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|227828497|ref|YP_002830277.1|	-	0.0077	15.3	0.0	0.036	13.1	0.0	1.9	2	0	0	2	2	2	1	Acyl-CoA	reductase	(LuxC)
Abhydrolase_1	PF00561.20	gi|227828498|ref|YP_002830278.1|	-	8.3e-25	87.9	0.0	1.8e-24	86.8	0.0	1.5	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|227828498|ref|YP_002830278.1|	-	1.4e-19	70.3	0.0	6e-19	68.3	0.0	1.8	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|227828498|ref|YP_002830278.1|	-	2.3e-15	57.8	0.0	3.1e-15	57.4	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|227828498|ref|YP_002830278.1|	-	3.7e-06	26.6	0.0	0.0042	16.6	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_2	PF02230.16	gi|227828498|ref|YP_002830278.1|	-	1.7e-05	24.8	0.0	6.4e-05	22.9	0.0	1.8	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
Lipase_3	PF01764.25	gi|227828498|ref|YP_002830278.1|	-	0.00024	21.0	0.0	0.00076	19.4	0.0	1.7	1	1	0	1	1	1	1	Lipase	(class	3)
Peptidase_S15	PF02129.18	gi|227828498|ref|YP_002830278.1|	-	0.00064	19.4	0.0	0.088	12.4	0.0	2.1	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Thioesterase	PF00975.20	gi|227828498|ref|YP_002830278.1|	-	0.0029	17.8	0.0	0.0039	17.3	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	domain
PAF-AH_p_II	PF03403.13	gi|227828498|ref|YP_002830278.1|	-	0.0079	14.7	0.0	0.013	14.0	0.0	1.3	1	0	0	1	1	1	1	Platelet-activating	factor	acetylhydrolase,	isoform	II
Abhydrolase_3	PF07859.13	gi|227828498|ref|YP_002830278.1|	-	0.0085	16.0	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
PGAP1	PF07819.13	gi|227828498|ref|YP_002830278.1|	-	0.013	15.3	0.0	0.031	14.0	0.0	1.7	2	0	0	2	2	2	0	PGAP1-like	protein
Peptidase_S28	PF05577.12	gi|227828498|ref|YP_002830278.1|	-	0.026	13.4	0.0	0.039	12.8	0.0	1.2	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
DLH	PF01738.18	gi|227828498|ref|YP_002830278.1|	-	0.033	13.7	0.0	0.39	10.2	0.0	2.1	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
Esterase	PF00756.20	gi|227828498|ref|YP_002830278.1|	-	0.043	13.5	0.0	0.061	13.0	0.0	1.3	1	0	0	1	1	1	0	Putative	esterase
DUF1057	PF06342.12	gi|227828498|ref|YP_002830278.1|	-	0.05	12.6	1.3	0.12	11.4	0.1	2.0	2	1	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Chlorophyllase	PF07224.11	gi|227828498|ref|YP_002830278.1|	-	0.067	12.2	0.0	0.092	11.7	0.0	1.2	1	0	0	1	1	1	0	Chlorophyllase
AXE1	PF05448.12	gi|227828498|ref|YP_002830278.1|	-	0.07	11.8	0.3	0.52	8.9	0.1	2.0	1	1	0	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
BAAT_C	PF08840.11	gi|227828498|ref|YP_002830278.1|	-	0.096	12.6	0.0	0.16	11.8	0.0	1.6	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_8	PF06259.12	gi|227828498|ref|YP_002830278.1|	-	0.15	11.7	0.0	0.24	11.0	0.0	1.2	1	0	0	1	1	1	0	Alpha/beta	hydrolase
HTH_10	PF04967.12	gi|227828499|ref|YP_002830279.1|	-	1.3e-17	63.3	0.0	2.6e-17	62.4	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|227828499|ref|YP_002830279.1|	-	0.0025	17.5	0.1	0.28	10.9	0.0	2.6	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|227828499|ref|YP_002830279.1|	-	0.0028	17.2	0.2	0.011	15.2	0.2	2.0	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|227828499|ref|YP_002830279.1|	-	0.023	14.6	0.0	0.072	13.1	0.0	1.9	1	0	0	1	1	1	0	HTH	domain
HTH_17	PF12728.7	gi|227828499|ref|YP_002830279.1|	-	0.027	14.6	0.0	0.15	12.3	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
adh_short_C2	PF13561.6	gi|227828500|ref|YP_002830280.1|	-	6.1e-65	219.0	0.4	7.1e-65	218.8	0.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227828500|ref|YP_002830280.1|	-	3.1e-57	193.2	1.4	3.7e-57	193.0	1.4	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227828500|ref|YP_002830280.1|	-	3.5e-14	53.1	0.2	5.2e-14	52.6	0.2	1.2	1	0	0	1	1	1	1	KR	domain
TPR_8	PF13181.6	gi|227828500|ref|YP_002830280.1|	-	0.011	15.9	0.0	0.025	14.8	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Ribosomal_S13	PF00416.22	gi|227828500|ref|YP_002830280.1|	-	0.048	14.0	0.2	2.6	8.5	0.0	2.3	1	1	1	2	2	2	0	Ribosomal	protein	S13/S18
Epimerase	PF01370.21	gi|227828500|ref|YP_002830280.1|	-	0.079	12.4	0.6	0.57	9.6	0.6	2.1	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|227828500|ref|YP_002830280.1|	-	0.089	12.7	0.1	0.2	11.5	0.1	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Vps16_C	PF04840.12	gi|227828500|ref|YP_002830280.1|	-	0.1	11.7	0.0	0.14	11.1	0.0	1.2	1	0	0	1	1	1	0	Vps16,	C-terminal	region
TPR_1	PF00515.28	gi|227828500|ref|YP_002830280.1|	-	0.15	11.9	0.0	0.35	10.8	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Thiolase_N	PF00108.23	gi|227828501|ref|YP_002830281.1|	-	0.00032	20.2	0.0	0.00046	19.6	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227828501|ref|YP_002830281.1|	-	0.0011	18.6	0.3	0.0026	17.4	0.0	1.7	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
DUF35_N	PF12172.8	gi|227828502|ref|YP_002830282.1|	-	2.6e-09	36.8	0.2	3.8e-09	36.2	0.2	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|227828502|ref|YP_002830282.1|	-	0.00018	21.5	0.0	0.00037	20.4	0.0	1.5	1	1	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
TackOD1	PF18551.1	gi|227828502|ref|YP_002830282.1|	-	0.00048	19.9	0.2	0.00066	19.4	0.2	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
HypA	PF01155.19	gi|227828502|ref|YP_002830282.1|	-	0.0013	18.7	0.1	0.0029	17.6	0.1	1.5	2	0	0	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|227828502|ref|YP_002830282.1|	-	0.011	15.7	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbons
NOB1_Zn_bind	PF08772.11	gi|227828502|ref|YP_002830282.1|	-	0.044	14.0	0.6	0.11	12.7	0.6	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-TFIIB	PF13453.6	gi|227828502|ref|YP_002830282.1|	-	0.099	12.0	0.3	0.38	10.1	0.0	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
TRAM	PF01938.20	gi|227828502|ref|YP_002830282.1|	-	0.11	12.5	0.1	0.17	11.9	0.1	1.3	1	0	0	1	1	1	0	TRAM	domain
FdhE	PF04216.12	gi|227828502|ref|YP_002830282.1|	-	0.28	11.0	0.4	0.39	10.6	0.4	1.1	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
DUF951	PF06107.11	gi|227828502|ref|YP_002830282.1|	-	0.58	10.1	2.9	18	5.4	0.1	2.8	3	1	1	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF951)
DUF998	PF06197.13	gi|227828504|ref|YP_002830284.1|	-	1.4e-20	73.7	9.9	1.9e-20	73.2	9.9	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
DUF4064	PF13273.6	gi|227828504|ref|YP_002830284.1|	-	0.44	10.8	17.5	0.4	11.0	4.2	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
Methyltransf_24	PF13578.6	gi|227828505|ref|YP_002830285.1|	-	1.6e-12	48.4	0.0	2.4e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CmcI	PF04989.12	gi|227828505|ref|YP_002830285.1|	-	0.002	17.9	0.0	0.0037	17.0	0.0	1.4	1	1	0	1	1	1	1	Cephalosporin	hydroxylase
DUF4830	PF16112.5	gi|227828505|ref|YP_002830285.1|	-	0.032	14.7	0.1	0.45	11.0	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4830)
SPC22	PF04573.12	gi|227828505|ref|YP_002830285.1|	-	0.097	12.2	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Signal	peptidase	subunit
TatC	PF00902.18	gi|227828506|ref|YP_002830286.1|	-	1.1e-40	139.7	17.7	1.5e-40	139.3	17.7	1.2	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
OST3_OST6	PF04756.13	gi|227828506|ref|YP_002830286.1|	-	0.89	8.8	0.0	0.89	8.8	0.0	3.1	2	1	1	3	3	3	0	OST3	/	OST6	family,	transporter	family
MttA_Hcf106	PF02416.16	gi|227828507|ref|YP_002830287.1|	-	2.6e-13	49.1	1.4	3.5e-13	48.7	1.4	1.4	1	1	0	1	1	1	1	mttA/Hcf106	family
Lectin_N	PF03954.14	gi|227828507|ref|YP_002830287.1|	-	0.0093	15.7	0.6	0.013	15.3	0.6	1.1	1	0	0	1	1	1	1	Hepatic	lectin,	N-terminal	domain
DUF4834	PF16118.5	gi|227828507|ref|YP_002830287.1|	-	0.0093	16.9	0.3	0.011	16.6	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4834)
DUF724	PF05266.14	gi|227828507|ref|YP_002830287.1|	-	0.012	15.4	5.9	0.014	15.3	5.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
FAM76	PF16046.5	gi|227828507|ref|YP_002830287.1|	-	0.052	12.9	2.6	0.059	12.7	2.6	1.0	1	0	0	1	1	1	0	FAM76	protein
Ribosomal_L29	PF00831.23	gi|227828507|ref|YP_002830287.1|	-	0.2	11.6	5.9	0.11	12.5	3.8	1.6	2	0	0	2	2	2	0	Ribosomal	L29	protein
DUF4094	PF13334.6	gi|227828507|ref|YP_002830287.1|	-	0.27	11.7	3.1	0.29	11.6	3.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
G_path_suppress	PF15991.5	gi|227828507|ref|YP_002830287.1|	-	2	8.5	10.2	2.4	8.2	10.2	1.0	1	0	0	1	1	1	0	G-protein	pathway	suppressor
bZIP_2	PF07716.15	gi|227828507|ref|YP_002830287.1|	-	2.2	8.4	8.3	0.37	10.9	3.0	1.9	2	0	0	2	2	2	0	Basic	region	leucine	zipper
Synaptobrevin	PF00957.21	gi|227828507|ref|YP_002830287.1|	-	4.1	7.3	11.0	0.37	10.6	3.2	2.1	2	0	0	2	2	2	0	Synaptobrevin
ILVD_EDD	PF00920.21	gi|227828508|ref|YP_002830288.1|	-	1.9e-206	686.7	0.8	2.2e-206	686.5	0.8	1.0	1	0	0	1	1	1	1	Dehydratase	family
Peptidase_M32	PF02074.15	gi|227828509|ref|YP_002830289.1|	-	5.9e-146	487.1	0.3	6.6e-146	486.9	0.3	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
Cadherin_5	PF17892.1	gi|227828510|ref|YP_002830290.1|	-	0.088	12.8	2.1	0.23	11.4	0.3	2.3	1	1	1	2	2	2	0	Cadherin-like	domain
Big_9	PF17963.1	gi|227828510|ref|YP_002830290.1|	-	1.3	9.8	8.2	0.5	11.1	2.5	2.6	1	1	2	3	3	3	0	Bacterial	Ig	domain
HTH_IclR	PF09339.10	gi|227828511|ref|YP_002830291.1|	-	1e-09	38.0	0.0	1.7e-09	37.3	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|227828511|ref|YP_002830291.1|	-	9.4e-07	28.6	0.0	1.7e-06	27.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|227828511|ref|YP_002830291.1|	-	1.1e-06	28.4	0.3	2.4e-06	27.3	0.3	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|227828511|ref|YP_002830291.1|	-	8.1e-06	25.3	0.0	1.7e-05	24.2	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|227828511|ref|YP_002830291.1|	-	1.4e-05	25.5	0.2	2.6e-05	24.6	0.2	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|227828511|ref|YP_002830291.1|	-	0.0016	18.4	0.0	0.0038	17.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|227828511|ref|YP_002830291.1|	-	0.0019	18.2	0.0	0.0032	17.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|227828511|ref|YP_002830291.1|	-	0.02	14.8	0.0	0.066	13.1	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|227828511|ref|YP_002830291.1|	-	0.046	13.7	0.0	0.14	12.1	0.0	1.8	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.6	gi|227828511|ref|YP_002830291.1|	-	0.084	13.0	0.0	0.27	11.4	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|227828511|ref|YP_002830291.1|	-	0.16	11.8	0.0	0.31	10.9	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
PA14	PF07691.12	gi|227828512|ref|YP_002830292.1|	-	0.079	12.8	1.7	0.13	12.1	1.7	1.3	1	0	0	1	1	1	0	PA14	domain
Shisa	PF13908.6	gi|227828512|ref|YP_002830292.1|	-	0.11	12.8	1.3	0.15	12.2	1.3	1.2	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Mucin	PF01456.17	gi|227828512|ref|YP_002830292.1|	-	6.3	6.8	17.2	9.1	6.3	17.2	1.2	1	0	0	1	1	1	0	Mucin-like	glycoprotein
TMEM154	PF15102.6	gi|227828513|ref|YP_002830293.1|	-	0.002	18.1	11.7	0.0047	16.8	11.7	1.6	1	0	0	1	1	1	1	TMEM154	protein	family
RIFIN	PF02009.16	gi|227828513|ref|YP_002830293.1|	-	0.03	14.2	8.2	0.05	13.5	8.2	1.4	1	0	0	1	1	1	0	Rifin
Stevor	PF17410.2	gi|227828513|ref|YP_002830293.1|	-	0.043	13.4	4.2	0.11	12.0	4.2	1.7	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
DUF5383	PF17355.2	gi|227828513|ref|YP_002830293.1|	-	0.072	13.5	1.4	0.15	12.5	1.4	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5383)
UL45	PF05473.12	gi|227828513|ref|YP_002830293.1|	-	0.14	11.7	4.9	0.31	10.6	4.9	1.5	1	0	0	1	1	1	0	UL45	protein,	carbohydrate-binding	C-type	lectin-like
Phage_holin_3_6	PF07332.11	gi|227828514|ref|YP_002830294.1|	-	0.038	14.0	0.2	0.038	14.0	0.2	3.5	2	1	1	3	3	3	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
HTH_10	PF04967.12	gi|227828515|ref|YP_002830295.1|	-	2.8e-21	75.0	0.0	4.6e-21	74.4	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|227828515|ref|YP_002830295.1|	-	3.4e-06	26.5	0.0	1.6e-05	24.3	0.0	2.2	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|227828515|ref|YP_002830295.1|	-	0.001	18.8	0.0	0.12	12.2	0.1	2.7	2	0	0	2	2	2	1	Homeodomain-like	domain
Peroxin-22	PF12827.7	gi|227828515|ref|YP_002830295.1|	-	0.0036	17.2	0.2	0.092	12.7	0.0	2.2	2	0	0	2	2	2	1	Peroxisomal	biogenesis	protein	family
MarR_2	PF12802.7	gi|227828515|ref|YP_002830295.1|	-	0.012	15.5	0.0	0.029	14.3	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DUF4449	PF14613.6	gi|227828515|ref|YP_002830295.1|	-	0.013	15.6	0.2	0.021	14.9	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4449)
HTH_24	PF13412.6	gi|227828515|ref|YP_002830295.1|	-	0.021	14.4	0.9	0.39	10.3	0.0	3.1	2	1	1	3	3	3	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|227828515|ref|YP_002830295.1|	-	0.026	14.4	0.0	1.2	9.0	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
NusA_N	PF08529.11	gi|227828515|ref|YP_002830295.1|	-	0.027	14.8	0.1	0.086	13.2	0.1	1.8	1	0	0	1	1	1	0	NusA	N-terminal	domain
GntR	PF00392.21	gi|227828515|ref|YP_002830295.1|	-	0.1	12.3	0.0	0.58	9.8	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
SKA2	PF16740.5	gi|227828515|ref|YP_002830295.1|	-	0.16	11.8	0.1	2.6	7.8	0.0	2.4	2	1	1	3	3	3	0	Spindle	and	kinetochore-associated	protein	2
ABC_tran	PF00005.27	gi|227828517|ref|YP_002830297.1|	-	6.6e-14	52.6	0.0	1.3e-13	51.6	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
MMR_HSR1	PF01926.23	gi|227828517|ref|YP_002830297.1|	-	0.0016	18.5	0.0	0.0025	17.9	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_14	PF13173.6	gi|227828517|ref|YP_002830297.1|	-	0.011	15.8	0.1	0.099	12.7	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
DoxD	PF04173.13	gi|227828519|ref|YP_002830299.1|	-	1.1e-61	207.6	14.3	1.3e-61	207.4	14.3	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
DoxX	PF07681.12	gi|227828519|ref|YP_002830299.1|	-	2.8e-09	37.4	5.1	5.6e-09	36.5	5.1	1.5	1	0	0	1	1	1	1	DoxX
DoxX_3	PF13781.6	gi|227828519|ref|YP_002830299.1|	-	1.2	9.8	9.4	1.8	9.3	4.3	2.7	2	1	1	3	3	3	0	DoxX-like	family
Lactonase	PF10282.9	gi|227828521|ref|YP_002830301.1|	-	0.0002	20.7	0.0	0.18	11.0	0.0	2.6	1	1	1	2	2	2	2	Lactonase,	7-bladed	beta-propeller
ANAPC4_WD40	PF12894.7	gi|227828521|ref|YP_002830301.1|	-	0.073	13.4	0.0	4.9	7.5	0.0	3.3	1	1	0	2	2	2	0	Anaphase-promoting	complex	subunit	4	WD40	domain
DUF3997	PF13162.6	gi|227828521|ref|YP_002830301.1|	-	0.16	12.3	0.2	10	6.4	0.1	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3997)
Insulin_TMD	PF17870.1	gi|227828521|ref|YP_002830301.1|	-	0.19	11.8	1.2	0.75	9.9	0.2	2.5	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
DrsE	PF02635.15	gi|227828522|ref|YP_002830302.1|	-	2e-05	24.9	0.0	2.1e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Coronavirus_5	PF05528.11	gi|227828522|ref|YP_002830302.1|	-	0.15	12.1	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Coronavirus	gene	5	protein
LA-virus_coat	PF09220.10	gi|227828523|ref|YP_002830303.1|	-	0.14	10.7	0.0	0.16	10.5	0.0	1.1	1	0	0	1	1	1	0	L-A	virus,	major	coat	protein
TusA	PF01206.17	gi|227828524|ref|YP_002830304.1|	-	1.9e-14	53.3	0.1	6.1e-14	51.6	0.1	1.9	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Sec16_C	PF12931.7	gi|227828524|ref|YP_002830304.1|	-	0.077	12.6	0.1	0.28	10.8	0.0	1.8	2	0	0	2	2	2	0	Sec23-binding	domain	of	Sec16
SF3A3	PF16837.5	gi|227828524|ref|YP_002830304.1|	-	3.9	8.0	14.3	3.5	8.2	3.8	3.6	3	1	0	3	3	3	0	Pre-mRNA-splicing	factor	SF3A3,	of	SF3a	complex,	Prp9
TusA	PF01206.17	gi|227828525|ref|YP_002830305.1|	-	3.5e-19	68.4	0.1	4e-19	68.2	0.1	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|227828525|ref|YP_002830305.1|	-	0.00044	20.1	0.0	0.00066	19.5	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
Sulf_transp	PF04143.14	gi|227828526|ref|YP_002830306.1|	-	1.1e-67	228.9	23.1	1.5e-67	228.4	23.1	1.2	1	0	0	1	1	1	1	Sulphur	transport
DrsE_2	PF13686.6	gi|227828528|ref|YP_002830308.1|	-	3.1e-12	46.6	0.4	3.2e-05	23.9	0.1	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|227828528|ref|YP_002830308.1|	-	1e-07	32.3	0.0	1.2e-07	32.1	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
NCD1	PF04904.13	gi|227828528|ref|YP_002830308.1|	-	0.02	14.9	0.0	0.038	14.0	0.0	1.6	1	0	0	1	1	1	0	NAB	conserved	region	1	(NCD1)
ABC_tran	PF00005.27	gi|227828529|ref|YP_002830309.1|	-	7.8e-26	91.2	0.0	1.2e-25	90.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828529|ref|YP_002830309.1|	-	2.3e-11	44.1	0.6	6e-06	26.3	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_27	PF13514.6	gi|227828529|ref|YP_002830309.1|	-	1.7e-05	24.5	0.0	2.8e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227828529|ref|YP_002830309.1|	-	2.3e-05	24.0	0.2	5.5e-05	22.8	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|227828529|ref|YP_002830309.1|	-	0.00021	21.8	0.6	0.00046	20.8	0.2	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|227828529|ref|YP_002830309.1|	-	0.00044	20.1	0.9	0.0012	18.6	0.9	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
T2SSE	PF00437.20	gi|227828529|ref|YP_002830309.1|	-	0.0036	16.4	0.0	0.006	15.7	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
RsgA_GTPase	PF03193.16	gi|227828529|ref|YP_002830309.1|	-	0.004	17.1	0.1	0.011	15.6	0.1	1.7	1	0	0	1	1	1	1	RsgA	GTPase
ACT_7	PF13840.6	gi|227828529|ref|YP_002830309.1|	-	0.0058	16.4	0.0	0.024	14.4	0.0	2.0	1	0	0	1	1	1	1	ACT	domain
AAA_22	PF13401.6	gi|227828529|ref|YP_002830309.1|	-	0.007	16.6	0.1	0.024	14.9	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|227828529|ref|YP_002830309.1|	-	0.0086	15.5	1.0	0.057	12.8	0.2	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|227828529|ref|YP_002830309.1|	-	0.016	15.6	0.0	0.022	15.2	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|227828529|ref|YP_002830309.1|	-	0.04	13.6	0.0	0.074	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|227828529|ref|YP_002830309.1|	-	0.048	13.6	0.1	0.13	12.1	0.0	1.7	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_PrkA	PF08298.11	gi|227828529|ref|YP_002830309.1|	-	0.065	12.1	0.4	0.14	11.1	0.1	1.8	2	1	0	2	2	2	0	PrkA	AAA	domain
AAA_25	PF13481.6	gi|227828529|ref|YP_002830309.1|	-	0.11	12.1	0.1	0.85	9.2	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
Cytochrom_B558a	PF05038.13	gi|227828530|ref|YP_002830310.1|	-	0.0056	16.3	0.7	0.01	15.4	0.1	1.7	1	1	1	2	2	2	1	Cytochrome	Cytochrome	b558	alpha-subunit
Gram_pos_anchor	PF00746.21	gi|227828531|ref|YP_002830311.1|	-	0.01	15.8	0.5	0.03	14.3	0.0	1.9	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
CD20	PF04103.15	gi|227828531|ref|YP_002830311.1|	-	0.17	11.9	6.0	0.15	12.1	1.7	2.2	1	1	1	2	2	2	0	CD20-like	family
Saf_2TM	PF18303.1	gi|227828531|ref|YP_002830311.1|	-	0.19	11.3	0.3	0.19	11.3	0.3	2.0	1	1	0	2	2	2	0	SAVED-fused	2TM	effector	domain
DUF3188	PF11384.8	gi|227828531|ref|YP_002830311.1|	-	0.42	10.4	5.0	2	8.2	0.4	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3188)
DUF202	PF02656.15	gi|227828531|ref|YP_002830311.1|	-	0.73	10.3	2.9	13	6.3	2.9	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
CRPA	PF05745.11	gi|227828531|ref|YP_002830311.1|	-	0.91	9.5	3.9	2.9	7.9	0.6	2.1	2	0	0	2	2	2	0	Chlamydia	15	kDa	cysteine-rich	outer	membrane	protein	(CRPA)
DUF3096	PF11295.8	gi|227828531|ref|YP_002830311.1|	-	4.5	7.0	10.8	5.1	6.8	1.7	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3096)
DUF3185	PF11381.8	gi|227828531|ref|YP_002830311.1|	-	5.1	7.2	10.8	7.8	6.6	1.7	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3185)
HTH_10	PF04967.12	gi|227828532|ref|YP_002830312.1|	-	2.2e-22	78.6	0.1	4.7e-22	77.6	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|227828532|ref|YP_002830312.1|	-	0.0039	16.7	0.0	0.01	15.3	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
Fe-S_biosyn	PF01521.20	gi|227828532|ref|YP_002830312.1|	-	0.0041	17.3	0.4	0.4	10.9	0.1	2.2	2	0	0	2	2	2	1	Iron-sulphur	cluster	biosynthesis
HTH_24	PF13412.6	gi|227828532|ref|YP_002830312.1|	-	0.024	14.2	2.1	0.14	11.7	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
BTB_3	PF16017.5	gi|227828532|ref|YP_002830312.1|	-	0.082	13.0	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	BTB/POZ	domain
MFS_1	PF07690.16	gi|227828533|ref|YP_002830313.1|	-	2.3e-44	151.8	49.7	2.3e-44	151.8	49.7	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|227828533|ref|YP_002830313.1|	-	4.5e-11	42.6	30.0	9.1e-11	41.6	30.0	1.4	1	1	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
Sugar_tr	PF00083.24	gi|227828533|ref|YP_002830313.1|	-	1.5e-07	30.7	38.7	7.9e-07	28.3	38.7	2.1	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
DAHP_snth_FXD	PF18152.1	gi|227828534|ref|YP_002830314.1|	-	0.0098	15.7	0.0	0.0098	15.7	0.0	1.0	1	0	0	1	1	1	1	DAHP	synthase	ferredoxin-like	domain
DUF772	PF05598.11	gi|227828535|ref|YP_002830315.1|	-	0.1	12.7	0.0	0.11	12.6	0.0	1.0	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
MazE_antitoxin	PF04014.18	gi|227828536|ref|YP_002830316.1|	-	1.1e-06	28.4	0.1	1.8e-06	27.8	0.1	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF3006	PF11213.8	gi|227828536|ref|YP_002830316.1|	-	0.016	15.4	0.0	0.022	14.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3006)
DUF4258	PF14076.6	gi|227828536|ref|YP_002830316.1|	-	0.042	14.2	1.4	7.3	7.1	0.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4258)
PIN	PF01850.21	gi|227828537|ref|YP_002830317.1|	-	9.4e-15	55.2	2.0	1.1e-14	55.0	2.0	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_9	PF18477.1	gi|227828537|ref|YP_002830317.1|	-	0.0021	18.3	0.7	0.036	14.4	0.7	2.0	1	1	0	1	1	1	1	PIN	like	domain
Orthopox_A49R	PF06489.11	gi|227828537|ref|YP_002830317.1|	-	0.059	13.6	0.6	0.13	12.5	0.6	1.7	1	1	0	1	1	1	0	Orthopoxvirus	A49R	protein
PIN_4	PF13638.6	gi|227828537|ref|YP_002830317.1|	-	0.073	13.4	0.3	0.11	12.8	0.3	1.5	1	1	0	1	1	1	0	PIN	domain
EamA	PF00892.20	gi|227828538|ref|YP_002830318.1|	-	2.4e-19	69.8	41.7	1.1e-13	51.5	13.6	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
Zip	PF02535.22	gi|227828539|ref|YP_002830319.1|	-	0.0062	15.8	19.1	0.023	14.0	1.7	3.1	2	1	1	3	3	3	3	ZIP	Zinc	transporter
DUF3917	PF13055.6	gi|227828539|ref|YP_002830319.1|	-	0.91	10.0	8.2	0.2	12.1	3.7	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3917)
SLATT_fungal	PF18142.1	gi|227828539|ref|YP_002830319.1|	-	7.6	6.6	6.2	0.61	10.1	0.9	1.9	2	1	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain
DHDPS	PF00701.22	gi|227828540|ref|YP_002830320.1|	-	4.5e-59	199.5	0.0	5.2e-59	199.3	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Cyclase	PF04199.13	gi|227828541|ref|YP_002830321.1|	-	2e-22	79.9	0.0	2.9e-22	79.4	0.0	1.2	1	0	0	1	1	1	1	Putative	cyclase
ABC_tran	PF00005.27	gi|227828542|ref|YP_002830322.1|	-	3e-32	112.0	0.0	4.9e-32	111.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
GlcV_C_terminal	PF17847.1	gi|227828542|ref|YP_002830322.1|	-	4.1e-29	100.8	0.9	8.9e-29	99.7	0.9	1.6	1	0	0	1	1	1	1	Glucose	ABC	transporter	C-terminal	domain
AAA_21	PF13304.6	gi|227828542|ref|YP_002830322.1|	-	1.4e-05	25.1	0.0	0.012	15.5	0.0	2.5	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SbcCD_C	PF13558.6	gi|227828542|ref|YP_002830322.1|	-	0.0096	16.1	0.1	0.063	13.5	0.1	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
OB_MalK	PF17912.1	gi|227828542|ref|YP_002830322.1|	-	0.012	16.5	0.2	0.03	15.2	0.2	1.8	1	0	0	1	1	1	0	MalK	OB	fold	domain
AAA	PF00004.29	gi|227828542|ref|YP_002830322.1|	-	0.067	13.6	0.0	3.4	8.1	0.0	2.6	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CysA_C_terminal	PF17850.1	gi|227828542|ref|YP_002830322.1|	-	0.084	13.5	0.0	0.19	12.4	0.0	1.6	1	0	0	1	1	1	0	CysA	C-terminal	regulatory	domain
BPD_transp_1	PF00528.22	gi|227828543|ref|YP_002830323.1|	-	6.2e-15	55.4	30.1	6.2e-15	55.4	30.1	2.6	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|227828544|ref|YP_002830324.1|	-	3.3e-11	43.3	25.5	3.3e-11	43.3	25.5	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
UPF0697	PF15117.6	gi|227828544|ref|YP_002830324.1|	-	0.29	11.2	3.8	0.51	10.4	0.0	2.9	3	1	1	4	4	4	0	Uncharacterised	protein	family	UPF0697
SBP_bac_8	PF13416.6	gi|227828545|ref|YP_002830325.1|	-	7.2e-09	35.9	7.6	1.3e-08	35.0	7.6	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|227828545|ref|YP_002830325.1|	-	0.00058	19.9	6.4	0.00058	19.9	6.4	2.4	1	1	1	3	3	3	1	Bacterial	extracellular	solute-binding	protein
Pilin_N	PF07790.11	gi|227828545|ref|YP_002830325.1|	-	0.23	12.4	2.6	0.57	11.1	2.6	1.6	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
FtsX	PF02687.21	gi|227828545|ref|YP_002830325.1|	-	3.5	8.2	6.9	1.4	9.5	2.5	2.5	2	0	0	2	2	2	0	FtsX-like	permease	family
SSP160	PF06933.11	gi|227828545|ref|YP_002830325.1|	-	3.6	5.7	16.7	5.4	5.1	16.7	1.1	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
AMP-binding	PF00501.28	gi|227828546|ref|YP_002830326.1|	-	3.7e-82	276.2	0.0	4.4e-82	275.9	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227828546|ref|YP_002830326.1|	-	7.8e-24	84.5	0.2	2e-23	83.2	0.2	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
IU_nuc_hydro	PF01156.19	gi|227828547|ref|YP_002830327.1|	-	2e-67	228.0	0.1	2.3e-67	227.8	0.1	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
HTH_10	PF04967.12	gi|227828548|ref|YP_002830328.1|	-	4.9e-19	67.9	0.0	9.9e-19	66.9	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|227828548|ref|YP_002830328.1|	-	0.00093	18.7	0.1	0.002	17.6	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|227828548|ref|YP_002830328.1|	-	0.024	14.5	0.0	0.29	11.0	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
GED	PF02212.18	gi|227828548|ref|YP_002830328.1|	-	0.041	14.0	2.3	0.061	13.5	0.3	2.3	2	1	0	2	2	2	0	Dynamin	GTPase	effector	domain
MAP	PF03642.13	gi|227828548|ref|YP_002830328.1|	-	0.054	13.8	1.9	0.52	10.7	0.5	2.6	2	0	0	2	2	2	0	MAP	domain
GerE	PF00196.19	gi|227828548|ref|YP_002830328.1|	-	0.064	12.8	0.1	0.064	12.8	0.1	2.9	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	luxR	family
Alpha_L_fucos	PF01120.17	gi|227828549|ref|YP_002830329.1|	-	9e-100	334.5	3.1	1.1e-99	334.2	3.1	1.0	1	0	0	1	1	1	1	Alpha-L-fucosidase
Fucosidase_C	PF16757.5	gi|227828549|ref|YP_002830329.1|	-	0.0016	19.0	0.0	0.0032	18.0	0.0	1.4	1	0	0	1	1	1	1	Alpha-L-fucosidase	C-terminal	domain
Alpha-E	PF04168.12	gi|227828549|ref|YP_002830329.1|	-	0.11	12.3	0.0	0.15	11.8	0.0	1.1	1	0	0	1	1	1	0	A	predicted	alpha-helical	domain	with	a	conserved	ER	motif.
BPD_transp_1	PF00528.22	gi|227828550|ref|YP_002830330.1|	-	3.1e-13	49.9	22.6	3.1e-13	49.9	22.6	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|227828550|ref|YP_002830330.1|	-	0.01	15.8	0.4	0.01	15.8	0.4	3.3	4	0	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|227828551|ref|YP_002830331.1|	-	1.7e-34	119.1	17.5	1.7e-34	119.1	17.5	2.6	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
VCPO_N	PF17897.1	gi|227828551|ref|YP_002830331.1|	-	0.13	12.0	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Vanadium	chloroperoxidase	N-terminal	domain
ABC_tran	PF00005.27	gi|227828552|ref|YP_002830332.1|	-	4.1e-64	215.2	0.0	3.4e-33	115.1	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|227828552|ref|YP_002830332.1|	-	1.3e-25	89.6	0.7	3.7e-18	65.8	0.1	2.4	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227828552|ref|YP_002830332.1|	-	7.2e-14	52.3	3.8	0.00044	20.2	0.1	4.2	3	1	0	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828552|ref|YP_002830332.1|	-	2.9e-08	33.4	0.4	0.00081	18.9	0.0	3.2	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|227828552|ref|YP_002830332.1|	-	9.4e-08	32.1	0.5	0.0018	18.2	0.2	2.7	2	0	0	2	2	2	2	RsgA	GTPase
AAA_29	PF13555.6	gi|227828552|ref|YP_002830332.1|	-	1.8e-07	30.8	0.3	0.019	14.7	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|227828552|ref|YP_002830332.1|	-	3.6e-07	30.3	0.1	0.028	14.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.6	gi|227828552|ref|YP_002830332.1|	-	4.4e-06	27.4	1.9	0.015	15.8	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|227828552|ref|YP_002830332.1|	-	1.4e-05	25.0	0.0	0.071	12.8	0.0	2.8	2	1	0	2	2	2	2	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|227828552|ref|YP_002830332.1|	-	6.3e-05	23.3	0.1	0.42	11.0	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_16	PF13191.6	gi|227828552|ref|YP_002830332.1|	-	9.3e-05	22.9	0.0	0.027	14.9	0.0	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227828552|ref|YP_002830332.1|	-	0.00018	22.0	2.0	0.62	10.5	0.0	3.5	2	2	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF87	PF01935.17	gi|227828552|ref|YP_002830332.1|	-	0.00018	21.7	0.4	0.085	12.9	0.1	2.6	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
AAA_25	PF13481.6	gi|227828552|ref|YP_002830332.1|	-	0.00059	19.5	0.1	2.3	7.8	0.0	3.3	3	0	0	3	3	3	1	AAA	domain
AAA_22	PF13401.6	gi|227828552|ref|YP_002830332.1|	-	0.00064	20.0	6.8	1.1	9.5	1.2	3.8	2	2	0	2	2	2	2	AAA	domain
PRK	PF00485.18	gi|227828552|ref|YP_002830332.1|	-	0.00075	19.3	0.0	0.09	12.5	0.0	2.3	2	0	0	2	2	2	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_33	PF13671.6	gi|227828552|ref|YP_002830332.1|	-	0.0008	19.6	0.0	1.4	9.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
APS_kinase	PF01583.20	gi|227828552|ref|YP_002830332.1|	-	0.00089	19.2	0.3	0.85	9.5	0.1	2.3	2	0	0	2	2	2	2	Adenylylsulphate	kinase
NB-ARC	PF00931.22	gi|227828552|ref|YP_002830332.1|	-	0.0031	16.7	0.3	1.1	8.4	0.0	2.8	3	0	0	3	3	3	1	NB-ARC	domain
AAA_18	PF13238.6	gi|227828552|ref|YP_002830332.1|	-	0.0035	17.9	0.0	2.7	8.5	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|227828552|ref|YP_002830332.1|	-	0.0044	16.9	0.1	1.9	8.4	0.0	2.6	2	1	0	2	2	2	1	Rad17	P-loop	domain
AAA_30	PF13604.6	gi|227828552|ref|YP_002830332.1|	-	0.0051	16.5	1.2	0.18	11.5	0.6	2.8	3	0	0	3	3	3	1	AAA	domain
AAA_13	PF13166.6	gi|227828552|ref|YP_002830332.1|	-	0.0055	15.4	0.0	0.071	11.7	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
Zeta_toxin	PF06414.12	gi|227828552|ref|YP_002830332.1|	-	0.0058	15.9	0.2	2.3	7.5	0.2	2.3	2	0	0	2	2	2	1	Zeta	toxin
IstB_IS21	PF01695.17	gi|227828552|ref|YP_002830332.1|	-	0.0059	16.4	0.1	2.1	8.0	0.0	2.7	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
NTPase_1	PF03266.15	gi|227828552|ref|YP_002830332.1|	-	0.007	16.3	0.6	0.3	11.0	0.0	2.7	2	0	0	2	2	2	1	NTPase
TniB	PF05621.11	gi|227828552|ref|YP_002830332.1|	-	0.011	15.2	4.2	4.4	6.7	0.0	3.8	4	0	0	4	4	4	0	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|227828552|ref|YP_002830332.1|	-	0.013	15.2	0.1	1.9	8.1	0.0	2.4	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|227828552|ref|YP_002830332.1|	-	0.013	14.8	0.0	6.8	6.0	0.0	2.6	3	0	0	3	3	2	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|227828552|ref|YP_002830332.1|	-	0.014	15.4	3.3	0.25	11.2	0.0	2.7	2	0	0	2	2	2	0	NACHT	domain
AAA_10	PF12846.7	gi|227828552|ref|YP_002830332.1|	-	0.015	14.3	0.5	0.3	10.0	0.0	2.6	3	0	0	3	3	3	0	AAA-like	domain
MMR_HSR1	PF01926.23	gi|227828552|ref|YP_002830332.1|	-	0.018	15.1	0.4	4.7	7.3	0.0	2.9	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_28	PF13521.6	gi|227828552|ref|YP_002830332.1|	-	0.019	15.2	0.0	1.8	8.8	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
CbiA	PF01656.23	gi|227828552|ref|YP_002830332.1|	-	0.023	14.7	3.1	4.8	7.2	0.1	2.6	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ATPase	PF06745.13	gi|227828552|ref|YP_002830332.1|	-	0.024	14.0	1.2	2.1	7.6	0.0	2.9	3	0	0	3	3	3	0	KaiC
PhoH	PF02562.16	gi|227828552|ref|YP_002830332.1|	-	0.032	13.7	0.4	5	6.5	0.0	2.5	2	0	0	2	2	2	0	PhoH-like	protein
ParA	PF10609.9	gi|227828552|ref|YP_002830332.1|	-	0.038	13.4	0.2	0.98	8.8	0.1	2.2	2	0	0	2	2	2	0	NUBPL	iron-transfer	P-loop	NTPase
ATP-synt_ab	PF00006.25	gi|227828552|ref|YP_002830332.1|	-	0.041	13.5	0.0	1	8.9	0.0	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_19	PF13245.6	gi|227828552|ref|YP_002830332.1|	-	0.06	13.7	1.3	29	5.0	0.5	3.2	3	1	0	3	3	3	0	AAA	domain
AAA_24	PF13479.6	gi|227828552|ref|YP_002830332.1|	-	0.074	12.8	0.8	7.4	6.2	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|227828552|ref|YP_002830332.1|	-	0.075	12.7	0.0	0.47	10.0	0.0	2.4	4	0	0	4	4	2	0	SRP54-type	protein,	GTPase	domain
ABC_ATPase	PF09818.9	gi|227828552|ref|YP_002830332.1|	-	0.081	11.7	9.6	0.84	8.4	0.7	3.9	4	1	0	4	4	4	0	Predicted	ATPase	of	the	ABC	class
Cytidylate_kin	PF02224.18	gi|227828552|ref|YP_002830332.1|	-	0.11	12.2	0.3	7.3	6.3	0.3	2.6	2	0	0	2	2	2	0	Cytidylate	kinase
MobB	PF03205.14	gi|227828552|ref|YP_002830332.1|	-	1.2	9.1	4.2	21	5.0	0.0	3.8	4	0	0	4	4	4	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Aldo_ket_red	PF00248.21	gi|227828553|ref|YP_002830333.1|	-	8.3e-69	232.0	0.0	9.6e-69	231.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
SBP_bac_5	PF00496.22	gi|227828554|ref|YP_002830334.1|	-	1.9e-45	155.5	7.6	3e-45	154.8	7.6	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|227828554|ref|YP_002830334.1|	-	0.0014	18.6	4.1	0.0019	18.1	4.1	1.2	1	0	0	1	1	1	1	Rifin
Podoplanin	PF05808.11	gi|227828554|ref|YP_002830334.1|	-	0.0037	17.4	11.1	0.0058	16.7	11.1	1.3	1	0	0	1	1	1	1	Podoplanin
FSA_C	PF10479.9	gi|227828554|ref|YP_002830334.1|	-	0.027	12.6	5.0	0.037	12.2	5.0	1.1	1	0	0	1	1	1	0	Fragile	site-associated	protein	C-terminus
SSP160	PF06933.11	gi|227828554|ref|YP_002830334.1|	-	0.042	12.1	17.3	0.06	11.5	17.3	1.2	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
VSP	PF03302.13	gi|227828554|ref|YP_002830334.1|	-	0.12	11.2	5.4	0.18	10.6	5.4	1.1	1	0	0	1	1	1	0	Giardia	variant-specific	surface	protein
Stevor	PF17410.2	gi|227828554|ref|YP_002830334.1|	-	0.24	10.9	4.1	0.38	10.3	4.1	1.3	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
Insulin_TMD	PF17870.1	gi|227828554|ref|YP_002830334.1|	-	0.33	11.1	3.8	0.82	9.8	3.8	1.7	1	0	0	1	1	1	0	Insulin	receptor	trans-membrane	segment
DUF5305	PF17231.2	gi|227828554|ref|YP_002830334.1|	-	0.49	9.8	9.2	1.1	8.7	9.2	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
Amnionless	PF14828.6	gi|227828554|ref|YP_002830334.1|	-	0.78	8.5	3.4	1.1	8.0	3.4	1.1	1	0	0	1	1	1	0	Amnionless
TMEM154	PF15102.6	gi|227828554|ref|YP_002830334.1|	-	0.89	9.5	10.6	1.5	8.7	10.6	1.3	1	0	0	1	1	1	0	TMEM154	protein	family
MGC-24	PF05283.11	gi|227828554|ref|YP_002830334.1|	-	0.9	10.0	12.3	1.6	9.2	12.3	1.3	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
Shisa	PF13908.6	gi|227828554|ref|YP_002830334.1|	-	1.3	9.2	3.8	2.7	8.2	3.8	1.6	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Protocadherin	PF08374.11	gi|227828554|ref|YP_002830334.1|	-	3.8	7.4	6.6	5.1	7.0	6.6	1.2	1	0	0	1	1	1	0	Protocadherin
Syndecan	PF01034.20	gi|227828554|ref|YP_002830334.1|	-	4	7.4	4.8	8.2	6.4	4.8	1.6	1	0	0	1	1	1	0	Syndecan	domain
EssA	PF10661.9	gi|227828554|ref|YP_002830334.1|	-	4.4	7.1	4.5	6.8	6.5	4.5	1.2	1	0	0	1	1	1	0	WXG100	protein	secretion	system	(Wss),	protein	EssA
Lipase_GDSL_2	PF13472.6	gi|227828555|ref|YP_002830335.1|	-	2.2e-18	67.3	0.0	2.5e-18	67.1	0.0	1.0	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL	PF00657.22	gi|227828555|ref|YP_002830335.1|	-	9.9e-11	42.0	0.0	1.4e-10	41.5	0.0	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase
Glyco_hydro_31	PF01055.26	gi|227828556|ref|YP_002830336.1|	-	2.2e-131	439.1	0.3	2.8e-131	438.7	0.3	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
Gal_mutarotas_2	PF13802.6	gi|227828556|ref|YP_002830336.1|	-	7e-21	74.3	0.0	2e-20	72.9	0.0	1.8	1	0	0	1	1	1	1	Galactose	mutarotase-like
AP_endonuc_2	PF01261.24	gi|227828557|ref|YP_002830337.1|	-	4.1e-18	65.6	0.2	1.6e-16	60.4	0.2	2.1	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Sigma70_r1_1	PF03979.14	gi|227828557|ref|YP_002830337.1|	-	0.022	14.8	0.6	0.074	13.1	0.7	1.8	2	0	0	2	2	2	0	Sigma-70	factor,	region	1.1
Polysacc_deac_1	PF01522.21	gi|227828557|ref|YP_002830337.1|	-	0.17	11.8	0.1	1.2	9.0	0.0	2.0	1	1	1	2	2	2	0	Polysaccharide	deacetylase
GFO_IDH_MocA	PF01408.22	gi|227828558|ref|YP_002830338.1|	-	1e-29	103.8	0.3	3.8e-29	101.9	0.3	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|227828558|ref|YP_002830338.1|	-	2.3e-08	34.0	0.0	4.5e-08	33.1	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_3	PF03447.16	gi|227828558|ref|YP_002830338.1|	-	4e-06	27.5	0.1	6.9e-06	26.7	0.1	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
ox_reductase_C	PF08635.10	gi|227828558|ref|YP_002830338.1|	-	0.0014	18.3	0.2	0.8	9.4	0.0	2.4	1	1	1	2	2	2	2	Putative	oxidoreductase	C	terminal	domain
2-Hacid_dh_C	PF02826.19	gi|227828558|ref|YP_002830338.1|	-	0.044	13.2	0.0	0.077	12.3	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|227828558|ref|YP_002830338.1|	-	0.06	13.4	0.1	0.1	12.7	0.1	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
BPD_transp_1	PF00528.22	gi|227828559|ref|YP_002830339.1|	-	2.7e-40	138.1	15.7	2.7e-40	138.1	15.7	1.9	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|227828560|ref|YP_002830340.1|	-	4e-14	52.8	20.6	4e-14	52.8	20.6	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|227828560|ref|YP_002830340.1|	-	0.0029	17.5	0.1	0.0029	17.5	0.1	3.4	4	2	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|227828561|ref|YP_002830341.1|	-	9.3e-27	94.2	0.0	1.3e-26	93.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828561|ref|YP_002830341.1|	-	7.8e-18	64.8	0.1	1.4e-17	63.9	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227828561|ref|YP_002830341.1|	-	2.9e-08	33.9	0.9	1.4e-06	28.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828561|ref|YP_002830341.1|	-	8.3e-05	22.1	1.3	0.00035	20.1	1.3	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227828561|ref|YP_002830341.1|	-	0.0019	17.9	0.3	0.0041	16.8	0.3	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|227828561|ref|YP_002830341.1|	-	0.004	17.7	1.0	0.0075	16.8	0.1	1.8	3	0	0	3	3	2	1	AAA	domain
AAA_16	PF13191.6	gi|227828561|ref|YP_002830341.1|	-	0.013	15.9	0.0	0.018	15.4	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
PRK	PF00485.18	gi|227828561|ref|YP_002830341.1|	-	0.044	13.5	0.0	0.072	12.8	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_15	PF13175.6	gi|227828561|ref|YP_002830341.1|	-	0.053	13.2	1.2	4	7.1	0.1	2.1	1	1	1	2	2	2	0	AAA	ATPase	domain
ATPase	PF06745.13	gi|227828561|ref|YP_002830341.1|	-	0.057	12.8	1.2	0.2	11.0	0.2	2.0	2	0	0	2	2	2	0	KaiC
AAA_24	PF13479.6	gi|227828561|ref|YP_002830341.1|	-	0.1	12.3	0.4	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|227828561|ref|YP_002830341.1|	-	0.13	11.8	0.1	0.95	9.0	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|227828561|ref|YP_002830341.1|	-	0.26	11.5	2.6	2.8	8.2	2.6	2.2	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|227828562|ref|YP_002830342.1|	-	6.9e-28	97.9	0.0	9.2e-28	97.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828562|ref|YP_002830342.1|	-	9.8e-06	26.0	0.1	1.8e-05	25.2	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227828562|ref|YP_002830342.1|	-	0.00095	19.1	0.0	0.0017	18.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828562|ref|YP_002830342.1|	-	0.03	13.8	0.0	0.047	13.1	0.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
PhoH	PF02562.16	gi|227828562|ref|YP_002830342.1|	-	0.056	12.9	0.1	0.33	10.4	0.1	2.0	2	0	0	2	2	2	0	PhoH-like	protein
SBP_bac_5	PF00496.22	gi|227828563|ref|YP_002830343.1|	-	6.2e-83	278.8	9.9	6.2e-83	278.8	9.9	1.8	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|227828563|ref|YP_002830343.1|	-	4.8e-05	23.4	10.0	6.8e-05	22.9	10.0	1.2	1	0	0	1	1	1	1	Rifin
Stevor	PF17410.2	gi|227828563|ref|YP_002830343.1|	-	0.13	11.8	9.3	0.18	11.3	9.3	1.2	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
DUF1180	PF06679.12	gi|227828563|ref|YP_002830343.1|	-	0.29	11.5	6.9	0.51	10.7	6.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1180)
AJAP1_PANP_C	PF15298.6	gi|227828563|ref|YP_002830343.1|	-	0.68	10.1	32.4	1.3	9.2	32.4	1.3	1	0	0	1	1	1	0	AJAP1/PANP	C-terminus
Mucin	PF01456.17	gi|227828563|ref|YP_002830343.1|	-	0.72	9.8	52.4	1.7	8.6	52.4	1.6	1	0	0	1	1	1	0	Mucin-like	glycoprotein
DUF5383	PF17355.2	gi|227828563|ref|YP_002830343.1|	-	0.74	10.2	4.1	1.4	9.3	4.1	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5383)
DUF4064	PF13273.6	gi|227828563|ref|YP_002830343.1|	-	0.79	10.0	8.5	3.6	7.9	3.6	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
SOG2	PF10428.9	gi|227828563|ref|YP_002830343.1|	-	1	8.5	15.5	1.4	8.0	15.5	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
Peptidase_M56	PF05569.11	gi|227828563|ref|YP_002830343.1|	-	2.1	7.5	4.9	3.6	6.7	4.9	1.4	1	0	0	1	1	1	0	BlaR1	peptidase	M56
DUF5305	PF17231.2	gi|227828563|ref|YP_002830343.1|	-	2.7	7.3	20.9	5	6.5	20.9	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
Glu_dehyd_C	PF16912.5	gi|227828564|ref|YP_002830344.1|	-	3.1e-24	85.6	0.0	5.6e-24	84.8	0.0	1.4	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|227828564|ref|YP_002830344.1|	-	4.3e-20	71.6	0.3	6.7e-20	71.0	0.3	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
FAD_binding_3	PF01494.19	gi|227828564|ref|YP_002830344.1|	-	0.0014	18.0	0.0	0.0021	17.3	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Shikimate_DH	PF01488.20	gi|227828564|ref|YP_002830344.1|	-	0.036	14.1	0.0	0.085	12.9	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
DUF1188	PF06690.11	gi|227828564|ref|YP_002830344.1|	-	0.11	12.0	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
SGL	PF08450.12	gi|227828565|ref|YP_002830345.1|	-	5.3e-75	252.2	0.0	6.1e-75	252.0	0.0	1.0	1	0	0	1	1	1	1	SMP-30/Gluconolactonase/LRE-like	region
Arylesterase	PF01731.20	gi|227828565|ref|YP_002830345.1|	-	0.14	12.4	0.0	0.37	11.0	0.0	1.8	1	0	0	1	1	1	0	Arylesterase
Str_synth	PF03088.16	gi|227828565|ref|YP_002830345.1|	-	0.14	12.3	0.0	0.54	10.4	0.0	1.9	2	0	0	2	2	2	0	Strictosidine	synthase
DUF608	PF04685.13	gi|227828566|ref|YP_002830346.1|	-	3.4e-37	128.5	4.3	2.4e-28	99.3	0.9	2.7	3	1	0	3	3	3	2	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydr_116N	PF12215.8	gi|227828566|ref|YP_002830346.1|	-	1.6e-26	93.5	0.1	4.8e-18	65.7	0.0	2.3	2	0	0	2	2	2	2	beta-glucosidase	2,	glycosyl-hydrolase	family	116	N-term
Glyco_hydro_36	PF17167.4	gi|227828566|ref|YP_002830346.1|	-	0.0075	15.0	0.1	0.013	14.2	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
DUF2139	PF09910.9	gi|227828567|ref|YP_002830347.1|	-	9.2e-33	113.8	0.3	1.3e-32	113.3	0.3	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2139)
Glyco_hydro_2_C	PF02836.17	gi|227828568|ref|YP_002830348.1|	-	2.3e-69	233.8	0.1	4.4e-69	232.9	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro_2_N	PF02837.18	gi|227828568|ref|YP_002830348.1|	-	6.5e-17	61.9	2.7	6.5e-17	61.9	2.7	2.3	2	2	1	3	3	3	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|227828568|ref|YP_002830348.1|	-	3.8e-11	43.6	0.1	9.6e-11	42.3	0.1	1.7	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
BetaGal_dom4_5	PF13364.6	gi|227828568|ref|YP_002830348.1|	-	0.0054	17.3	0.3	0.01	16.4	0.3	1.4	1	0	0	1	1	1	1	Beta-galactosidase	jelly	roll	domain
Cellulase	PF00150.18	gi|227828568|ref|YP_002830348.1|	-	0.0095	15.4	1.6	0.11	11.9	0.1	2.5	2	1	0	2	2	2	1	Cellulase	(glycosyl	hydrolase	family	5)
PRESAN	PF09687.10	gi|227828568|ref|YP_002830348.1|	-	0.028	15.0	0.8	0.087	13.4	0.8	1.8	1	0	0	1	1	1	0	Plasmodium	RESA	N-terminal
DHDPS	PF00701.22	gi|227828569|ref|YP_002830349.1|	-	1.7e-36	125.4	0.0	2e-36	125.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Glyco_hydro_3	PF00933.21	gi|227828570|ref|YP_002830350.1|	-	6.1e-79	265.7	0.0	8.1e-79	265.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|227828570|ref|YP_002830350.1|	-	9.4e-61	205.3	0.0	1.4e-60	204.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|227828570|ref|YP_002830350.1|	-	4.4e-22	78.0	0.0	1.9e-21	75.9	0.0	2.0	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
CARDB	PF07705.11	gi|227828570|ref|YP_002830350.1|	-	0.065	13.5	0.0	0.15	12.3	0.0	1.5	1	0	0	1	1	1	0	CARDB
B1	PF02246.15	gi|227828571|ref|YP_002830351.1|	-	0.085	12.9	0.0	0.18	11.9	0.0	1.5	1	0	0	1	1	1	0	Protein	L	b1	domain
TLP-20	PF06088.11	gi|227828571|ref|YP_002830351.1|	-	0.15	11.9	0.8	16	5.3	0.3	2.3	2	0	0	2	2	2	0	Nucleopolyhedrovirus	telokin-like	protein-20	(TLP20)
Cytidylate_kin2	PF13189.6	gi|227828572|ref|YP_002830352.1|	-	0.0025	18.0	1.4	0.0035	17.5	1.4	1.2	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
DUF3333	PF11812.8	gi|227828572|ref|YP_002830352.1|	-	0.018	15.2	0.2	0.024	14.9	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3333)
EH_Signature	PF15611.6	gi|227828572|ref|YP_002830352.1|	-	0.034	13.5	0.3	0.042	13.3	0.3	1.0	1	0	0	1	1	1	0	EH_Signature	domain
Post_transc_reg	PF13797.6	gi|227828572|ref|YP_002830352.1|	-	0.067	13.1	3.8	0.073	12.9	3.1	1.5	1	1	0	1	1	1	0	Post-transcriptional	regulator
DUF4795	PF16043.5	gi|227828572|ref|YP_002830352.1|	-	0.12	11.9	2.2	7.7	6.1	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
RHH_1	PF01402.21	gi|227828572|ref|YP_002830352.1|	-	0.24	11.4	6.9	0.53	10.3	0.3	3.2	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
PIN	PF01850.21	gi|227828573|ref|YP_002830353.1|	-	0.0006	20.3	0.1	0.00061	20.3	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
SBP_bac_5	PF00496.22	gi|227828574|ref|YP_002830354.1|	-	2.3e-69	234.2	11.3	2.3e-69	234.2	11.3	1.6	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|227828574|ref|YP_002830354.1|	-	1.3e-05	25.3	5.2	1.8e-05	24.8	5.2	1.2	1	0	0	1	1	1	1	Rifin
TMEM154	PF15102.6	gi|227828574|ref|YP_002830354.1|	-	0.011	15.7	15.3	0.011	15.7	15.3	1.5	2	0	0	2	2	2	0	TMEM154	protein	family
Stevor	PF17410.2	gi|227828574|ref|YP_002830354.1|	-	0.34	10.4	7.4	0.6	9.6	7.4	1.3	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
DUF5305	PF17231.2	gi|227828574|ref|YP_002830354.1|	-	0.35	10.2	13.8	0.65	9.4	13.8	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
AJAP1_PANP_C	PF15298.6	gi|227828574|ref|YP_002830354.1|	-	0.47	10.7	23.3	0.78	9.9	23.3	1.3	1	0	0	1	1	1	0	AJAP1/PANP	C-terminus
DUF4064	PF13273.6	gi|227828574|ref|YP_002830354.1|	-	0.79	10.0	10.2	5.4	7.3	4.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
Peptidase_M56	PF05569.11	gi|227828574|ref|YP_002830354.1|	-	0.88	8.7	4.4	1.7	7.8	4.4	1.5	1	0	0	1	1	1	0	BlaR1	peptidase	M56
MGC-24	PF05283.11	gi|227828574|ref|YP_002830354.1|	-	2.7	8.5	16.7	4.8	7.6	16.7	1.3	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
FSA_C	PF10479.9	gi|227828574|ref|YP_002830354.1|	-	3	5.9	16.4	4	5.4	16.4	1.1	1	0	0	1	1	1	0	Fragile	site-associated	protein	C-terminus
AP_endonuc_2	PF01261.24	gi|227828575|ref|YP_002830355.1|	-	4.7e-32	111.1	0.0	6.5e-32	110.7	0.0	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Cas_APE2256	PF09651.10	gi|227828575|ref|YP_002830355.1|	-	0.088	12.7	0.1	0.16	11.8	0.1	1.4	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_APE2256)
DDE_Tnp_2	PF04693.12	gi|227828576|ref|YP_002830356.1|	-	5.2e-40	137.7	1.8	6e-40	137.5	1.8	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227828576|ref|YP_002830356.1|	-	0.00026	20.7	0.1	0.00032	20.4	0.1	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
SBP_bac_5	PF00496.22	gi|227828577|ref|YP_002830357.1|	-	3.1e-71	240.3	6.4	5.7e-71	239.5	6.4	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|227828577|ref|YP_002830357.1|	-	0.0023	17.9	6.4	0.0038	17.2	6.4	1.3	1	0	0	1	1	1	1	Rifin
Stevor	PF17410.2	gi|227828577|ref|YP_002830357.1|	-	0.31	10.5	7.1	0.56	9.7	7.1	1.4	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
MGC-24	PF05283.11	gi|227828577|ref|YP_002830357.1|	-	0.61	10.5	13.5	1.3	9.5	13.5	1.4	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
DUF4064	PF13273.6	gi|227828577|ref|YP_002830357.1|	-	2.3	8.5	10.2	4.5	7.6	3.7	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF3671	PF12420.8	gi|227828577|ref|YP_002830357.1|	-	4.2	7.5	6.1	17	5.5	3.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function
TrbC	PF04956.13	gi|227828577|ref|YP_002830357.1|	-	5.8	7.2	11.3	8.8	6.6	4.4	2.7	2	0	0	2	2	2	0	TrbC/VIRB2	family
DUF5305	PF17231.2	gi|227828577|ref|YP_002830357.1|	-	6.4	6.1	20.6	0.81	9.1	16.4	1.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5305)
Hydrolase_4	PF12146.8	gi|227828578|ref|YP_002830358.1|	-	2.5e-24	85.9	0.0	2.9e-15	56.2	0.0	2.1	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|227828578|ref|YP_002830358.1|	-	1.2e-16	61.2	0.0	4.3e-11	42.9	0.0	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|227828578|ref|YP_002830358.1|	-	3.4e-11	44.2	0.0	2.2e-08	35.0	0.0	2.0	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
UPF0227	PF05728.12	gi|227828578|ref|YP_002830358.1|	-	5.3e-10	39.5	0.0	7.9e-10	39.0	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0227)
Peptidase_S9	PF00326.21	gi|227828578|ref|YP_002830358.1|	-	5.6e-09	35.8	0.0	8.7e-09	35.2	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
BAAT_C	PF08840.11	gi|227828578|ref|YP_002830358.1|	-	3.7e-08	33.6	0.1	1.3e-06	28.5	0.1	2.1	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_3	PF07859.13	gi|227828578|ref|YP_002830358.1|	-	6.7e-07	29.4	0.0	8.5e-07	29.0	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S15	PF02129.18	gi|227828578|ref|YP_002830358.1|	-	6.7e-06	25.9	0.0	0.0018	18.0	0.0	2.1	2	0	0	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.18	gi|227828578|ref|YP_002830358.1|	-	6.9e-05	22.5	0.0	0.00094	18.8	0.0	2.2	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
AXE1	PF05448.12	gi|227828578|ref|YP_002830358.1|	-	7e-05	21.6	0.0	0.00045	19.0	0.0	1.9	1	1	1	2	2	2	1	Acetyl	xylan	esterase	(AXE1)
FSH1	PF03959.13	gi|227828578|ref|YP_002830358.1|	-	0.00011	21.9	0.1	0.00073	19.3	0.0	2.1	1	1	1	2	2	2	1	Serine	hydrolase	(FSH1)
Abhydrolase_2	PF02230.16	gi|227828578|ref|YP_002830358.1|	-	0.0012	18.7	0.3	1.8	8.3	0.0	2.4	3	0	0	3	3	3	2	Phospholipase/Carboxylesterase
Esterase	PF00756.20	gi|227828578|ref|YP_002830358.1|	-	0.0024	17.5	0.0	0.003	17.2	0.0	1.3	1	0	0	1	1	1	1	Putative	esterase
DUF676	PF05057.14	gi|227828578|ref|YP_002830358.1|	-	0.013	15.1	0.0	0.028	13.9	0.0	1.6	2	0	0	2	2	2	0	Putative	serine	esterase	(DUF676)
Abhydrolase_5	PF12695.7	gi|227828578|ref|YP_002830358.1|	-	0.014	15.1	0.1	0.79	9.5	0.1	2.6	2	1	0	2	2	2	0	Alpha/beta	hydrolase	family
DUF2048	PF09752.9	gi|227828578|ref|YP_002830358.1|	-	0.015	14.5	0.0	0.026	13.6	0.0	1.3	1	0	0	1	1	1	0	Abhydrolase	domain	containing	18
Lipase	PF00151.19	gi|227828578|ref|YP_002830358.1|	-	0.033	13.5	0.0	0.045	13.1	0.0	1.1	1	0	0	1	1	1	0	Lipase
VirJ	PF06057.11	gi|227828578|ref|YP_002830358.1|	-	0.11	12.3	0.0	0.3	10.9	0.0	1.7	2	0	0	2	2	2	0	Bacterial	virulence	protein	(VirJ)
MR_MLE_C	PF13378.6	gi|227828579|ref|YP_002830359.1|	-	8.5e-42	143.2	0.0	1.2e-41	142.7	0.0	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227828579|ref|YP_002830359.1|	-	7.2e-12	45.6	0.0	1.4e-11	44.6	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Bac_rhamnosid6H	PF17389.2	gi|227828580|ref|YP_002830360.1|	-	3.3e-97	325.8	1.6	4.7e-97	325.3	1.6	1.2	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Bac_rhamnosid_N	PF08531.10	gi|227828580|ref|YP_002830360.1|	-	2.3e-48	164.3	0.0	4.4e-48	163.4	0.0	1.4	1	0	0	1	1	1	1	Alpha-L-rhamnosidase	N-terminal	domain
Bac_rhamnosid	PF05592.11	gi|227828580|ref|YP_002830360.1|	-	1.5e-30	105.2	0.0	3.5e-30	104.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	concanavalin-like	domain
Bac_rhamnosid_C	PF17390.2	gi|227828580|ref|YP_002830360.1|	-	1.6e-11	43.8	0.0	4.5e-11	42.4	0.0	1.7	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	C-terminal	domain
Glyco_hydro_31	PF01055.26	gi|227828582|ref|YP_002830362.1|	-	5.3e-134	447.7	1.9	6.5e-134	447.4	1.9	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
DUF5110	PF17137.4	gi|227828582|ref|YP_002830362.1|	-	6.9e-16	58.3	1.6	2.2e-15	56.7	0.2	2.5	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF5110)
Gal_mutarotas_2	PF13802.6	gi|227828582|ref|YP_002830362.1|	-	2.1e-07	31.2	0.8	2.1e-06	27.9	0.5	2.8	2	1	0	2	2	2	1	Galactose	mutarotase-like
DUF4968	PF16338.5	gi|227828582|ref|YP_002830362.1|	-	7.3e-05	23.0	0.1	0.00017	21.8	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4968)
Glyco_hydro_1	PF00232.18	gi|227828584|ref|YP_002830364.1|	-	3e-64	217.1	6.2	5.2e-57	193.3	2.7	2.5	2	1	0	2	2	2	2	Glycosyl	hydrolase	family	1
Cellulase	PF00150.18	gi|227828584|ref|YP_002830364.1|	-	3.9e-05	23.2	0.0	7e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
MFS_1	PF07690.16	gi|227828585|ref|YP_002830365.1|	-	7.1e-16	58.1	26.2	3.6e-09	36.0	7.1	2.0	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
EI24	PF07264.11	gi|227828585|ref|YP_002830365.1|	-	0.25	11.6	19.9	21	5.3	18.8	2.8	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
Amidohydro_2	PF04909.14	gi|227828586|ref|YP_002830366.1|	-	1.8e-25	90.3	0.0	2.5e-25	89.9	0.0	1.2	1	0	0	1	1	1	1	Amidohydrolase
TatD_DNase	PF01026.21	gi|227828586|ref|YP_002830366.1|	-	0.00075	18.9	0.0	0.0014	18.1	0.0	1.4	1	1	0	1	1	1	1	TatD	related	DNase
GFO_IDH_MocA	PF01408.22	gi|227828587|ref|YP_002830367.1|	-	1.8e-28	99.7	0.0	3.1e-28	99.0	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Aldo_ket_red	PF00248.21	gi|227828588|ref|YP_002830368.1|	-	9.3e-73	245.0	0.0	1e-72	244.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.22	gi|227828589|ref|YP_002830369.1|	-	2e-19	70.6	0.0	2.9e-19	70.1	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|227828589|ref|YP_002830369.1|	-	1.7e-05	24.8	0.0	2.9e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
DUF4941	PF16299.5	gi|227828589|ref|YP_002830369.1|	-	0.049	12.9	0.1	0.13	11.6	0.1	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4941)
COG4	PF08318.12	gi|227828589|ref|YP_002830369.1|	-	0.11	11.6	0.0	0.16	11.0	0.0	1.2	1	0	0	1	1	1	0	COG4	transport	protein
DDE_Tnp_IS240	PF13610.6	gi|227828590|ref|YP_002830370.1|	-	1.2e-05	25.5	1.2	2.1e-05	24.8	1.0	1.4	2	0	0	2	2	2	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227828590|ref|YP_002830370.1|	-	0.011	15.2	0.2	0.021	14.3	0.2	1.4	1	0	0	1	1	1	0	Transposase	IS66	family
ABC_membrane	PF00664.23	gi|227828591|ref|YP_002830371.1|	-	6.1e-47	160.6	7.4	6.1e-47	160.6	7.4	1.7	2	0	0	2	2	2	1	ABC	transporter	transmembrane	region
DUF1854	PF08909.11	gi|227828591|ref|YP_002830371.1|	-	1.1e-35	122.2	2.7	2.3e-35	121.2	0.3	2.6	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF1854)
ABC_tran	PF00005.27	gi|227828591|ref|YP_002830371.1|	-	2.2e-35	122.2	0.0	6.5e-35	120.6	0.0	1.9	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828591|ref|YP_002830371.1|	-	1.4e-06	28.3	0.1	0.019	14.8	0.1	2.8	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|227828591|ref|YP_002830371.1|	-	6e-06	26.2	1.5	3.8e-05	23.6	0.2	2.9	2	1	0	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|227828591|ref|YP_002830371.1|	-	5.2e-05	22.8	1.5	0.01	15.3	0.0	2.5	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|227828591|ref|YP_002830371.1|	-	0.0011	19.3	0.0	0.087	13.1	0.0	3.0	3	0	0	3	3	2	1	AAA	domain
DUF87	PF01935.17	gi|227828591|ref|YP_002830371.1|	-	0.0019	18.3	0.4	0.0076	16.4	0.0	2.2	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
AAA_29	PF13555.6	gi|227828591|ref|YP_002830371.1|	-	0.0025	17.5	0.1	0.0061	16.3	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|227828591|ref|YP_002830371.1|	-	0.011	16.2	0.2	0.071	13.7	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|227828591|ref|YP_002830371.1|	-	0.012	16.0	0.0	0.43	11.0	0.0	2.5	2	0	0	2	2	2	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|227828591|ref|YP_002830371.1|	-	0.014	15.5	0.4	0.19	11.8	0.0	2.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|227828591|ref|YP_002830371.1|	-	0.036	13.8	0.3	0.036	13.8	0.3	2.2	2	1	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|227828591|ref|YP_002830371.1|	-	0.04	13.8	0.1	0.5	10.3	0.0	2.5	2	0	0	2	2	2	0	RsgA	GTPase
AAA_5	PF07728.14	gi|227828591|ref|YP_002830371.1|	-	0.048	13.7	0.2	1.2	9.2	0.0	3.0	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|227828591|ref|YP_002830371.1|	-	0.05	13.3	0.0	1.4	8.6	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|227828591|ref|YP_002830371.1|	-	0.052	14.0	4.4	1.5	9.2	0.0	3.2	3	1	0	3	3	2	0	RNA	helicase
ABC_membrane_3	PF13748.6	gi|227828591|ref|YP_002830371.1|	-	0.054	12.7	8.3	0.021	14.0	3.7	2.5	2	1	0	2	2	2	0	ABC	transporter	transmembrane	region
AAA	PF00004.29	gi|227828591|ref|YP_002830371.1|	-	0.067	13.6	0.0	0.64	10.5	0.0	2.7	1	1	1	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|227828591|ref|YP_002830371.1|	-	0.074	12.3	0.0	0.17	11.1	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
IstB_IS21	PF01695.17	gi|227828591|ref|YP_002830371.1|	-	0.17	11.6	0.4	23	4.7	0.0	2.5	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ChitinaseA_N	PF08329.10	gi|227828591|ref|YP_002830371.1|	-	0.24	11.1	0.6	0.7	9.5	0.1	2.0	2	0	0	2	2	2	0	Chitinase	A,	N-terminal	domain
AAA_23	PF13476.6	gi|227828591|ref|YP_002830371.1|	-	0.7	10.4	0.0	0.7	10.4	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
GFO_IDH_MocA	PF01408.22	gi|227828592|ref|YP_002830372.1|	-	2.3e-22	80.1	0.0	3.5e-22	79.5	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|227828592|ref|YP_002830372.1|	-	2.7e-06	27.4	0.0	7.9e-06	25.9	0.0	1.9	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
MFS_1	PF07690.16	gi|227828593|ref|YP_002830373.1|	-	1.1e-18	67.4	42.0	1.9e-10	40.2	15.0	2.0	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Ald_Xan_dh_C2	PF02738.18	gi|227828594|ref|YP_002830374.1|	-	3.2e-152	507.8	0.1	3.8e-152	507.6	0.1	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227828594|ref|YP_002830374.1|	-	9e-17	61.4	1.2	3.9e-15	56.1	0.3	3.1	2	1	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
GFO_IDH_MocA	PF01408.22	gi|227828595|ref|YP_002830375.1|	-	1.2e-14	55.2	0.0	2.3e-14	54.3	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
G6PD_N	PF00479.22	gi|227828595|ref|YP_002830375.1|	-	0.026	15.2	0.1	0.057	14.0	0.0	1.6	2	0	0	2	2	2	0	Glucose-6-phosphate	dehydrogenase,	NAD	binding	domain
DUF4434	PF14488.6	gi|227828596|ref|YP_002830376.1|	-	3.5e-07	30.4	0.0	7.7e-07	29.3	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4434)
Cellulase	PF00150.18	gi|227828596|ref|YP_002830376.1|	-	1.4e-05	24.7	0.0	2.4e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Glyco_hydro_42M	PF08532.10	gi|227828596|ref|YP_002830376.1|	-	0.00027	20.5	0.0	0.00046	19.8	0.0	1.3	1	0	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
Glyco_hydro_42	PF02449.15	gi|227828596|ref|YP_002830376.1|	-	0.00051	19.5	0.0	0.0064	15.9	0.0	2.1	2	0	0	2	2	2	1	Beta-galactosidase
Glyco_hydro_72	PF03198.14	gi|227828596|ref|YP_002830376.1|	-	0.033	13.4	0.0	0.1	11.8	0.0	1.9	1	1	0	1	1	1	0	Glucanosyltransferase
Glyco_hydro_38N	PF01074.22	gi|227828597|ref|YP_002830377.1|	-	6.4e-68	229.2	0.0	1e-67	228.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	38	N-terminal	domain
Glyco_hydro_38C	PF07748.13	gi|227828597|ref|YP_002830377.1|	-	1e-56	192.4	0.0	2e-56	191.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	38	C-terminal	domain
Alpha-mann_mid	PF09261.11	gi|227828597|ref|YP_002830377.1|	-	1.8e-23	82.5	0.2	4.2e-23	81.3	0.2	1.7	1	0	0	1	1	1	1	Alpha	mannosidase	middle	domain
Glyco_hydro38C2	PF17677.1	gi|227828597|ref|YP_002830377.1|	-	1.1e-08	35.0	0.3	3.4e-08	33.5	0.3	1.9	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	38	C-terminal	beta	sandwich	domain
CIA30	PF08547.12	gi|227828597|ref|YP_002830377.1|	-	0.12	12.3	0.0	0.55	10.2	0.0	2.0	2	0	0	2	2	2	0	Complex	I	intermediate-associated	protein	30	(CIA30)
adh_short_C2	PF13561.6	gi|227828598|ref|YP_002830378.1|	-	4.9e-65	219.4	0.0	6.6e-65	218.9	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227828598|ref|YP_002830378.1|	-	7.9e-53	178.8	0.0	1.3e-52	178.1	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227828598|ref|YP_002830378.1|	-	1.6e-08	34.6	0.0	3.3e-08	33.7	0.0	1.4	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.10	gi|227828598|ref|YP_002830378.1|	-	0.00047	19.6	0.2	0.024	14.0	0.0	2.3	3	0	0	3	3	3	1	Fungal	family	of	unknown	function	(DUF1776)
Epimerase	PF01370.21	gi|227828598|ref|YP_002830378.1|	-	0.00073	19.1	0.1	0.0016	18.0	0.1	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
CSN4_RPN5_eIF3a	PF18420.1	gi|227828598|ref|YP_002830378.1|	-	0.1	12.8	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	CSN4/RPN5/eIF3a	helix	turn	helix	domain
Glu_dehyd_C	PF16912.5	gi|227828600|ref|YP_002830380.1|	-	5e-25	88.2	0.0	6.9e-25	87.8	0.0	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|227828600|ref|YP_002830380.1|	-	4.7e-17	61.8	0.0	7.3e-17	61.2	0.0	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
Shikimate_DH	PF01488.20	gi|227828600|ref|YP_002830380.1|	-	7.4e-06	26.1	0.0	1.7e-05	24.9	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
FAD_binding_3	PF01494.19	gi|227828600|ref|YP_002830380.1|	-	0.0069	15.7	0.0	0.011	15.0	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|227828600|ref|YP_002830380.1|	-	0.044	13.1	0.0	0.12	11.7	0.0	1.7	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227828600|ref|YP_002830380.1|	-	0.11	11.7	0.0	0.28	10.4	0.0	1.7	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
DapB_N	PF01113.20	gi|227828600|ref|YP_002830380.1|	-	0.16	12.1	0.0	0.28	11.3	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Glyco_tranf_2_3	PF13641.6	gi|227828601|ref|YP_002830381.1|	-	5.2e-16	59.2	0.0	7.8e-16	58.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|227828601|ref|YP_002830381.1|	-	9.8e-15	55.0	0.2	9.8e-15	55.0	0.2	2.6	3	0	0	3	3	3	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.26	gi|227828601|ref|YP_002830381.1|	-	5e-13	49.2	0.0	8.2e-13	48.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|227828601|ref|YP_002830381.1|	-	7.4e-10	38.6	0.0	1.6e-09	37.5	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|227828601|ref|YP_002830381.1|	-	0.0079	15.7	0.0	0.015	14.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF2517	PF10725.9	gi|227828601|ref|YP_002830381.1|	-	0.061	13.1	0.2	0.13	12.0	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2517)
Chitin_synth_2	PF03142.15	gi|227828601|ref|YP_002830381.1|	-	7	5.1	13.8	0.036	12.7	0.3	3.3	4	1	0	4	4	4	0	Chitin	synthase
Cpn60_TCP1	PF00118.24	gi|227828602|ref|YP_002830382.1|	-	7e-160	532.9	17.1	8.1e-160	532.7	17.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
MR_MLE_C	PF13378.6	gi|227828603|ref|YP_002830383.1|	-	6.1e-52	176.4	0.0	2e-51	174.6	0.0	1.8	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227828603|ref|YP_002830383.1|	-	9.3e-11	42.0	0.0	1.5e-10	41.3	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Dus	PF01207.17	gi|227828603|ref|YP_002830383.1|	-	0.097	11.8	0.0	0.15	11.1	0.0	1.2	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
3HCDH_N	PF02737.18	gi|227828604|ref|YP_002830384.1|	-	1.2e-67	227.3	0.3	1.8e-67	226.7	0.3	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|227828604|ref|YP_002830384.1|	-	1.6e-40	137.6	0.1	1.3e-26	93.0	0.0	2.8	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|227828604|ref|YP_002830384.1|	-	1.7e-05	25.1	0.0	4.1e-05	23.8	0.0	1.7	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|227828604|ref|YP_002830384.1|	-	0.0016	19.0	0.0	0.0047	17.5	0.0	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|227828604|ref|YP_002830384.1|	-	0.012	15.1	0.0	0.022	14.3	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227828604|ref|YP_002830384.1|	-	0.015	14.5	0.0	0.027	13.7	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Methyltransf_12	PF08242.12	gi|227828604|ref|YP_002830384.1|	-	0.028	15.2	0.0	0.064	14.0	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227828604|ref|YP_002830384.1|	-	0.057	14.1	0.0	0.25	12.1	0.0	2.0	2	0	0	2	2	2	0	Methyltransferase	domain
NAD_Gly3P_dh_N	PF01210.23	gi|227828604|ref|YP_002830384.1|	-	0.071	13.1	0.0	0.18	11.8	0.0	1.7	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
2-Hacid_dh_C	PF02826.19	gi|227828604|ref|YP_002830384.1|	-	0.091	12.1	0.3	0.27	10.6	0.2	1.9	1	1	1	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|227828604|ref|YP_002830384.1|	-	0.14	12.4	0.0	0.32	11.3	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Nramp	PF01566.18	gi|227828605|ref|YP_002830385.1|	-	2.1e-42	145.4	20.1	2.8e-42	145.0	20.1	1.2	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
DUF3954	PF13128.6	gi|227828606|ref|YP_002830386.1|	-	1.5	8.7	3.7	10	6.0	0.4	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3954)
DUF2207	PF09972.9	gi|227828607|ref|YP_002830387.1|	-	0.61	8.8	6.8	0.42	9.3	5.7	1.2	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
MDD_C	PF18376.1	gi|227828609|ref|YP_002830389.1|	-	1.9e-36	125.5	0.0	5.7e-34	117.5	0.0	2.2	1	1	1	2	2	2	2	Mevalonate	5-diphosphate	decarboxylase	C-terminal	domain
GHMP_kinases_N	PF00288.26	gi|227828609|ref|YP_002830389.1|	-	8.4e-08	32.3	0.4	1.7e-07	31.4	0.4	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
PAC2	PF09754.9	gi|227828609|ref|YP_002830389.1|	-	0.1	12.6	0.2	0.57	10.2	0.0	2.2	2	1	1	3	3	3	0	PAC2	family
GHMP_kinases_N	PF00288.26	gi|227828610|ref|YP_002830390.1|	-	1.5e-13	50.7	0.7	7.1e-13	48.6	0.2	2.1	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|227828610|ref|YP_002830390.1|	-	4.1e-07	30.3	1.1	2.4e-06	27.8	1.1	2.2	1	1	0	1	1	1	1	GHMP	kinases	C	terminal
V-ATPase_H_C	PF11698.8	gi|227828610|ref|YP_002830390.1|	-	0.0084	16.2	0.7	0.018	15.1	0.7	1.5	1	0	0	1	1	1	1	V-ATPase	subunit	H
Penicillinase_R	PF03965.16	gi|227828611|ref|YP_002830391.1|	-	0.0041	17.5	0.3	0.042	14.2	0.0	2.5	1	1	0	2	2	2	1	Penicillinase	repressor
ACDC	PF14733.6	gi|227828611|ref|YP_002830391.1|	-	0.0066	16.7	1.2	0.015	15.6	0.7	1.9	1	1	0	1	1	1	1	AP2-coincident	C-terminal
TrmB	PF01978.19	gi|227828611|ref|YP_002830391.1|	-	0.0088	15.9	0.3	6.5	6.7	0.0	2.7	2	1	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
TINF2_N	PF14973.6	gi|227828611|ref|YP_002830391.1|	-	0.019	15.3	0.7	0.047	14.0	0.5	1.8	2	0	0	2	2	2	0	TERF1-interacting	nuclear	factor	2	N-terminus
HTH_36	PF13730.6	gi|227828611|ref|YP_002830391.1|	-	0.043	13.8	0.3	0.3	11.1	0.2	2.6	2	1	0	2	2	2	0	Helix-turn-helix	domain
DUF5502	PF17606.2	gi|227828611|ref|YP_002830391.1|	-	0.091	13.5	1.0	0.92	10.2	0.3	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5502)
Muted	PF14942.6	gi|227828611|ref|YP_002830391.1|	-	0.3	11.4	5.0	2.3	8.6	0.3	2.4	1	1	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
HTH_45	PF14947.6	gi|227828612|ref|YP_002830392.1|	-	3.8e-24	84.5	1.3	5.2e-24	84.0	1.3	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|227828612|ref|YP_002830392.1|	-	0.00015	21.5	1.5	0.00041	20.1	1.2	1.7	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.6	gi|227828612|ref|YP_002830392.1|	-	0.00046	19.7	2.0	0.0023	17.5	0.7	2.5	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|227828612|ref|YP_002830392.1|	-	0.0039	17.5	0.0	0.0062	16.9	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.20	gi|227828612|ref|YP_002830392.1|	-	0.007	16.2	0.4	0.028	14.3	0.1	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
DUF505	PF04458.12	gi|227828612|ref|YP_002830392.1|	-	0.0091	14.4	0.2	0.0098	14.3	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
Mrr_N	PF14338.6	gi|227828612|ref|YP_002830392.1|	-	0.0099	16.0	0.0	0.02	15.0	0.0	1.6	1	1	0	1	1	1	1	Mrr	N-terminal	domain
HxlR	PF01638.17	gi|227828612|ref|YP_002830392.1|	-	0.011	15.6	0.1	0.03	14.2	0.1	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
Ribosomal_S25	PF03297.15	gi|227828612|ref|YP_002830392.1|	-	0.016	15.4	0.7	0.031	14.5	0.0	1.8	2	1	0	2	2	2	0	S25	ribosomal	protein
DUF2250	PF10007.9	gi|227828612|ref|YP_002830392.1|	-	0.037	14.1	0.2	0.11	12.6	0.1	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
FokI_C	PF02980.16	gi|227828612|ref|YP_002830392.1|	-	0.067	13.2	0.1	0.081	12.9	0.1	1.2	1	0	0	1	1	1	0	Restriction	endonuclease	FokI,	catalytic	domain
TrmB	PF01978.19	gi|227828612|ref|YP_002830392.1|	-	0.077	12.9	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|227828612|ref|YP_002830392.1|	-	0.096	13.2	0.1	0.27	11.8	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
ANAPC2	PF08672.11	gi|227828612|ref|YP_002830392.1|	-	0.11	13.1	0.3	0.25	11.9	0.3	1.7	1	1	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
SLATT_4	PF18186.1	gi|227828613|ref|YP_002830393.1|	-	1.8	8.2	5.3	0.24	11.0	0.4	1.9	1	1	1	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	family	4
Glycos_transf_1	PF00534.20	gi|227828614|ref|YP_002830394.1|	-	3.3e-12	46.3	0.1	8.3e-12	45.0	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227828614|ref|YP_002830394.1|	-	1.2e-11	45.1	0.1	6.8e-11	42.7	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227828614|ref|YP_002830394.1|	-	2.3e-07	31.0	0.0	4.2e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|227828614|ref|YP_002830394.1|	-	0.0047	17.3	0.0	0.01	16.2	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|227828614|ref|YP_002830394.1|	-	0.15	12.5	0.0	0.22	11.9	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
PAG	PF15347.6	gi|227828614|ref|YP_002830394.1|	-	0.16	10.9	0.1	0.31	10.0	0.1	1.4	1	0	0	1	1	1	0	Phosphoprotein	associated	with	glycosphingolipid-enriched
HTH_24	PF13412.6	gi|227828616|ref|YP_002830396.1|	-	0.0061	16.1	0.2	0.0099	15.4	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Tn7_Tnp_TnsA_C	PF08721.11	gi|227828616|ref|YP_002830396.1|	-	0.027	15.1	0.0	0.036	14.7	0.0	1.3	1	0	0	1	1	1	0	TnsA	endonuclease	C	terminal
HTH_WhiA	PF02650.14	gi|227828616|ref|YP_002830396.1|	-	0.051	13.9	0.0	0.068	13.5	0.0	1.2	1	0	0	1	1	1	0	WhiA	C-terminal	HTH	domain
Epimerase	PF01370.21	gi|227828617|ref|YP_002830397.1|	-	5.9e-11	42.3	0.0	2.2e-10	40.4	0.0	1.9	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|227828617|ref|YP_002830397.1|	-	3.2e-08	33.0	0.0	1.4e-07	30.9	0.0	1.8	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|227828617|ref|YP_002830397.1|	-	6.9e-07	29.0	0.2	0.00025	20.6	0.1	2.1	2	0	0	2	2	2	2	GDP-mannose	4,6	dehydratase
NmrA	PF05368.13	gi|227828617|ref|YP_002830397.1|	-	2.4e-06	27.3	0.0	4.1e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|227828617|ref|YP_002830397.1|	-	0.00021	20.4	0.5	0.0022	17.1	0.5	2.3	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|227828617|ref|YP_002830397.1|	-	0.00027	20.9	0.0	0.0009	19.2	0.0	1.9	1	1	0	1	1	1	1	NAD(P)H-binding
NAD_binding_2	PF03446.15	gi|227828617|ref|YP_002830397.1|	-	0.00042	20.5	0.0	0.00086	19.5	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|227828617|ref|YP_002830397.1|	-	0.096	12.0	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Esterase	PF00756.20	gi|227828619|ref|YP_002830399.1|	-	3.9e-16	59.5	0.0	1.1e-15	58.0	0.0	1.6	1	1	0	1	1	1	1	Putative	esterase
Abhydrolase_1	PF00561.20	gi|227828619|ref|YP_002830399.1|	-	0.0017	18.0	0.0	0.0026	17.4	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
BAAT_C	PF08840.11	gi|227828619|ref|YP_002830399.1|	-	0.002	18.1	0.0	0.0033	17.4	0.0	1.4	1	0	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S9	PF00326.21	gi|227828619|ref|YP_002830399.1|	-	0.0044	16.5	0.0	0.015	14.8	0.0	1.7	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Chlorophyllase	PF07224.11	gi|227828619|ref|YP_002830399.1|	-	0.0047	16.0	0.0	0.0078	15.3	0.0	1.4	1	1	0	1	1	1	1	Chlorophyllase
Chlorophyllase2	PF12740.7	gi|227828619|ref|YP_002830399.1|	-	0.017	14.1	0.0	0.08	11.8	0.0	2.0	1	1	0	1	1	1	0	Chlorophyllase	enzyme
Hydrolase_4	PF12146.8	gi|227828619|ref|YP_002830399.1|	-	0.065	12.5	0.0	0.2	10.9	0.0	1.7	1	1	1	2	2	2	0	Serine	aminopeptidase,	S33
IF-2B	PF01008.17	gi|227828620|ref|YP_002830400.1|	-	4.9e-74	249.1	0.1	5.8e-74	248.8	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
SpoIIM	PF01944.17	gi|227828621|ref|YP_002830401.1|	-	8e-12	45.5	12.3	2.1e-11	44.1	12.3	1.6	1	0	0	1	1	1	1	Stage	II	sporulation	protein	M
MIT	PF04212.18	gi|227828621|ref|YP_002830401.1|	-	0.00092	19.2	0.0	0.0021	18.1	0.0	1.6	1	0	0	1	1	1	1	MIT	(microtubule	interacting	and	transport)	domain
TPR_10	PF13374.6	gi|227828621|ref|YP_002830401.1|	-	0.2	11.6	0.1	0.43	10.5	0.1	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Gemini_mov	PF01708.16	gi|227828623|ref|YP_002830403.1|	-	0.25	11.1	1.9	0.41	10.4	1.9	1.3	1	0	0	1	1	1	0	Geminivirus	putative	movement	protein
Cellulose_synt	PF03552.14	gi|227828623|ref|YP_002830403.1|	-	3.1	6.2	5.5	2.9	6.3	5.5	1.1	1	0	0	1	1	1	0	Cellulose	synthase
DUF1404	PF07185.11	gi|227828624|ref|YP_002830404.1|	-	6e-56	188.8	19.5	7e-56	188.6	19.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
Caa3_CtaG	PF09678.10	gi|227828624|ref|YP_002830404.1|	-	0.05	13.1	14.8	0.013	15.0	6.2	2.1	1	1	1	2	2	2	0	Cytochrome	c	oxidase	caa3	assembly	factor	(Caa3_CtaG)
CPBP	PF02517.16	gi|227828624|ref|YP_002830404.1|	-	2.7	8.4	13.8	38	4.7	13.8	2.5	1	1	0	1	1	1	0	CPBP	intramembrane	metalloprotease
COX1	PF00115.20	gi|227828625|ref|YP_002830405.1|	-	3.9e-120	401.6	61.5	3.9e-120	401.6	61.5	2.8	2	1	1	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.18	gi|227828625|ref|YP_002830405.1|	-	3.1e-16	60.0	21.2	3.1e-16	60.0	21.2	3.0	2	1	0	2	2	2	1	Cytochrome	c	oxidase	subunit	III
SoxE	PF06525.11	gi|227828626|ref|YP_002830406.1|	-	5.4e-71	236.9	6.9	7.3e-71	236.5	6.9	1.2	1	0	0	1	1	1	1	Sulfocyanin	(SoxE)	domain
Cu-oxidase_2	PF07731.14	gi|227828626|ref|YP_002830406.1|	-	0.008	15.9	0.6	0.039	13.7	0.1	2.1	2	0	0	2	2	2	1	Multicopper	oxidase
Copper-bind	PF00127.20	gi|227828626|ref|YP_002830406.1|	-	0.013	15.9	0.0	0.023	15.2	0.0	1.4	1	0	0	1	1	1	0	Copper	binding	proteins,	plastocyanin/azurin	family
DUF2371	PF10177.9	gi|227828626|ref|YP_002830406.1|	-	0.079	13.1	0.1	0.16	12.2	0.1	1.5	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2371)
Rieske	PF00355.26	gi|227828627|ref|YP_002830407.1|	-	1.4e-13	50.6	0.0	2.7e-13	49.7	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
TAT_signal	PF10518.9	gi|227828627|ref|YP_002830407.1|	-	0.091	12.6	0.0	0.21	11.5	0.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cytochrom_B_N_2	PF13631.6	gi|227828628|ref|YP_002830408.1|	-	5.2e-32	111.2	5.4	1.9e-31	109.3	5.4	2.0	1	0	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|227828628|ref|YP_002830408.1|	-	1.1e-23	84.0	10.1	1.1e-23	84.0	10.1	2.2	3	0	0	3	3	3	1	Cytochrome	b/b6/petB
Ni_hydr_CYTB	PF01292.20	gi|227828628|ref|YP_002830408.1|	-	0.00041	20.0	12.3	0.058	13.0	0.4	3.2	2	1	1	3	3	3	2	Prokaryotic	cytochrome	b561
Cytochrom_B_C	PF00032.17	gi|227828628|ref|YP_002830408.1|	-	0.57	10.5	13.4	0.027	14.8	3.9	3.5	2	2	1	3	3	3	0	Cytochrome	b(C-terminal)/b6/petD
COX2	PF00116.20	gi|227828629|ref|YP_002830409.1|	-	1.1e-14	54.4	0.1	8.5e-14	51.5	0.0	2.0	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|227828629|ref|YP_002830409.1|	-	1.1e-05	25.4	0.0	1.5e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
Na_H_Exchanger	PF00999.21	gi|227828633|ref|YP_002830413.1|	-	1.7e-24	86.3	53.8	1.7e-24	86.3	53.8	2.2	3	0	0	3	3	3	1	Sodium/hydrogen	exchanger	family
DUF5412	PF17428.2	gi|227828635|ref|YP_002830415.1|	-	0.03	14.2	0.5	0.038	13.9	0.5	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5412)
DUF565	PF04483.12	gi|227828635|ref|YP_002830415.1|	-	0.11	13.0	0.3	0.13	12.9	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF565)
Methyltransf_11	PF08241.12	gi|227828636|ref|YP_002830416.1|	-	1.1e-09	38.8	0.0	1.6e-09	38.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227828636|ref|YP_002830416.1|	-	7.1e-09	35.6	0.1	9.6e-09	35.2	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|227828636|ref|YP_002830416.1|	-	1.3e-08	35.5	0.0	2.1e-08	34.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|227828636|ref|YP_002830416.1|	-	1.4e-05	24.6	0.2	2.2e-05	23.9	0.2	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|227828636|ref|YP_002830416.1|	-	0.00019	21.0	0.0	0.00053	19.6	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.12	gi|227828636|ref|YP_002830416.1|	-	0.00046	20.9	0.0	0.00085	20.0	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227828636|ref|YP_002830416.1|	-	0.00073	19.4	0.0	0.001	18.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
TPMT	PF05724.11	gi|227828636|ref|YP_002830416.1|	-	0.015	14.9	0.0	0.018	14.7	0.0	1.1	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
CMAS	PF02353.20	gi|227828636|ref|YP_002830416.1|	-	0.028	13.7	0.1	0.042	13.1	0.1	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
PrmA	PF06325.13	gi|227828636|ref|YP_002830416.1|	-	0.091	12.1	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|227828636|ref|YP_002830416.1|	-	0.094	12.5	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.12	gi|227828636|ref|YP_002830416.1|	-	0.1	12.2	0.3	0.28	10.8	0.2	1.8	1	1	1	2	2	2	0	Methionine	biosynthesis	protein	MetW
SBP_bac_5	PF00496.22	gi|227828637|ref|YP_002830417.1|	-	7e-63	212.8	1.7	1.4e-62	211.8	1.7	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
DUF4307	PF14155.6	gi|227828637|ref|YP_002830417.1|	-	0.0041	16.9	0.3	0.0087	15.9	0.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4307)
Shisa	PF13908.6	gi|227828637|ref|YP_002830417.1|	-	0.089	13.0	1.5	0.17	12.1	1.5	1.4	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
ISAV_HA	PF06215.11	gi|227828637|ref|YP_002830417.1|	-	0.31	10.1	2.6	3	6.9	0.3	2.2	1	1	1	2	2	2	0	Infectious	salmon	anaemia	virus	haemagglutinin
B277	PF17623.2	gi|227828637|ref|YP_002830417.1|	-	0.6	9.1	6.6	1	8.4	6.6	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function
BPD_transp_1	PF00528.22	gi|227828638|ref|YP_002830418.1|	-	7.6e-42	143.1	12.6	7.6e-42	143.1	12.6	1.8	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|227828639|ref|YP_002830419.1|	-	8.2e-28	97.4	11.0	8.2e-28	97.4	11.0	2.1	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|227828639|ref|YP_002830419.1|	-	0.029	14.3	0.7	0.029	14.3	0.7	2.5	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
PIG-P	PF08510.12	gi|227828639|ref|YP_002830419.1|	-	0.12	12.3	0.1	0.12	12.3	0.1	1.9	2	0	0	2	2	2	0	PIG-P
ABC_tran	PF00005.27	gi|227828640|ref|YP_002830420.1|	-	1.8e-29	103.0	0.0	3.2e-29	102.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828640|ref|YP_002830420.1|	-	3.8e-16	59.4	0.0	7.4e-16	58.4	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|227828640|ref|YP_002830420.1|	-	9.3e-07	28.5	1.9	2.2e-06	27.3	1.9	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|227828640|ref|YP_002830420.1|	-	0.00013	21.9	5.0	0.0026	17.6	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|227828640|ref|YP_002830420.1|	-	0.0015	18.2	0.0	0.0033	17.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|227828640|ref|YP_002830420.1|	-	0.018	15.3	0.1	0.063	13.6	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|227828640|ref|YP_002830420.1|	-	0.048	13.7	0.1	0.12	12.4	0.1	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
TniB	PF05621.11	gi|227828640|ref|YP_002830420.1|	-	0.092	12.1	0.4	1.4	8.3	0.1	2.3	2	0	0	2	2	2	0	Bacterial	TniB	protein
RsgA_GTPase	PF03193.16	gi|227828640|ref|YP_002830420.1|	-	0.1	12.5	0.3	0.3	11.0	0.1	1.8	2	0	0	2	2	2	0	RsgA	GTPase
NB-ARC	PF00931.22	gi|227828640|ref|YP_002830420.1|	-	0.13	11.4	0.5	0.26	10.4	0.1	1.6	2	0	0	2	2	2	0	NB-ARC	domain
ResIII	PF04851.15	gi|227828640|ref|YP_002830420.1|	-	0.15	12.1	0.1	8.2	6.4	0.0	2.3	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_23	PF13476.6	gi|227828640|ref|YP_002830420.1|	-	0.16	12.5	2.0	0.26	11.7	2.0	1.4	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|227828640|ref|YP_002830420.1|	-	0.16	11.9	0.1	0.36	10.7	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
DUF87	PF01935.17	gi|227828640|ref|YP_002830420.1|	-	0.21	11.6	1.8	0.4	10.7	0.2	1.9	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
ABC_tran	PF00005.27	gi|227828641|ref|YP_002830421.1|	-	2.9e-33	115.3	0.0	5.3e-33	114.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828641|ref|YP_002830421.1|	-	7.3e-16	58.5	0.0	1.5e-15	57.5	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227828641|ref|YP_002830421.1|	-	8.2e-07	29.1	5.5	3.7e-06	27.0	0.7	2.2	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828641|ref|YP_002830421.1|	-	0.00014	21.4	0.6	0.0078	15.7	0.6	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|227828641|ref|YP_002830421.1|	-	0.00028	21.2	1.8	0.0021	18.3	1.8	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|227828641|ref|YP_002830421.1|	-	0.0069	16.8	0.0	0.01	16.3	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|227828641|ref|YP_002830421.1|	-	0.0087	15.8	0.2	0.015	15.0	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_13	PF13166.6	gi|227828641|ref|YP_002830421.1|	-	0.016	13.9	1.4	0.099	11.3	0.2	2.0	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|227828641|ref|YP_002830421.1|	-	0.053	13.2	0.3	0.13	12.0	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ATP-synt_ab	PF00006.25	gi|227828641|ref|YP_002830421.1|	-	0.066	12.9	0.0	0.085	12.5	0.0	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA	PF00004.29	gi|227828641|ref|YP_002830421.1|	-	0.091	13.2	0.1	0.81	10.1	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|227828641|ref|YP_002830421.1|	-	0.092	12.7	0.2	0.18	11.7	0.2	1.5	1	0	0	1	1	1	0	RsgA	GTPase
GvpD	PF07088.11	gi|227828641|ref|YP_002830421.1|	-	0.11	11.2	0.5	0.39	9.3	0.0	1.8	2	0	0	2	2	2	0	GvpD	gas	vesicle	protein
T2SSE	PF00437.20	gi|227828641|ref|YP_002830421.1|	-	0.11	11.6	0.0	0.15	11.1	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
KH_2	PF07650.17	gi|227828641|ref|YP_002830421.1|	-	0.12	12.2	1.9	0.48	10.3	1.9	2.1	1	0	0	1	1	1	0	KH	domain
NACHT	PF05729.12	gi|227828641|ref|YP_002830421.1|	-	0.12	12.3	0.2	0.33	10.8	0.2	1.7	1	0	0	1	1	1	0	NACHT	domain
ResIII	PF04851.15	gi|227828641|ref|YP_002830421.1|	-	0.12	12.3	0.2	1	9.3	0.0	2.1	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|227828641|ref|YP_002830421.1|	-	0.18	11.5	1.2	0.77	9.5	1.2	1.9	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
SbcCD_C	PF13558.6	gi|227828641|ref|YP_002830421.1|	-	0.19	12.0	0.0	1.5	9.1	0.0	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DDE_Tnp_2	PF04693.12	gi|227828642|ref|YP_002830422.1|	-	2.2e-156	520.1	3.2	2.5e-156	519.9	3.2	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227828642|ref|YP_002830422.1|	-	1e-05	25.3	0.1	2.8e-05	23.9	0.1	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227828642|ref|YP_002830422.1|	-	0.047	13.0	0.0	0.32	10.3	0.0	2.0	1	1	0	1	1	1	0	DDE	superfamily	endonuclease
MFS_1	PF07690.16	gi|227828643|ref|YP_002830423.1|	-	2.6e-09	36.5	41.0	1.1e-05	24.6	11.2	3.2	1	1	2	3	3	3	2	Major	Facilitator	Superfamily
dUTPase	PF00692.19	gi|227828644|ref|YP_002830424.1|	-	8.6e-06	25.5	0.0	1.4e-05	24.8	0.0	1.5	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|227828644|ref|YP_002830424.1|	-	0.078	11.8	0.0	0.25	10.1	0.0	1.8	1	1	0	1	1	1	0	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
ESSS	PF10183.9	gi|227828646|ref|YP_002830426.1|	-	0.036	14.3	0.0	0.091	13.0	0.0	1.6	1	0	0	1	1	1	0	ESSS	subunit	of	NADH:ubiquinone	oxidoreductase	(complex	I)
DUF1494	PF07379.11	gi|227828646|ref|YP_002830426.1|	-	0.61	9.9	3.8	11	5.9	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1494)
COX4_pro	PF03626.14	gi|227828647|ref|YP_002830427.1|	-	0.1	13.0	0.3	0.1	13.0	0.3	2.4	2	0	0	2	2	2	0	Prokaryotic	Cytochrome	C	oxidase	subunit	IV
PIN	PF01850.21	gi|227828648|ref|YP_002830428.1|	-	8.5e-09	36.0	0.1	1e-08	35.7	0.1	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_5	PF08745.11	gi|227828648|ref|YP_002830428.1|	-	0.0019	17.7	0.3	0.0052	16.2	0.3	1.7	1	1	0	1	1	1	1	PINc	domain	ribonuclease
PIN_9	PF18477.1	gi|227828648|ref|YP_002830428.1|	-	0.016	15.5	0.1	0.072	13.4	0.0	2.0	2	1	0	2	2	2	0	PIN	like	domain
DUF5615	PF18480.1	gi|227828648|ref|YP_002830428.1|	-	0.083	12.6	0.1	0.18	11.6	0.0	1.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5615)
MazE_antitoxin	PF04014.18	gi|227828649|ref|YP_002830429.1|	-	3.9e-11	42.6	4.1	5.4e-11	42.1	4.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
eIF-1a	PF01176.19	gi|227828649|ref|YP_002830429.1|	-	0.073	12.9	3.7	0.11	12.3	3.7	1.5	1	1	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
Pec_lyase_C	PF00544.19	gi|227828649|ref|YP_002830429.1|	-	0.13	11.9	0.1	0.14	11.7	0.1	1.0	1	0	0	1	1	1	0	Pectate	lyase
PrlF_antitoxin	PF15937.5	gi|227828649|ref|YP_002830429.1|	-	0.15	12.5	0.1	0.19	12.2	0.1	1.2	1	0	0	1	1	1	0	prlF	antitoxin	for	toxin	YhaV_toxin
Ald_Xan_dh_C2	PF02738.18	gi|227828650|ref|YP_002830430.1|	-	7.1e-116	387.9	0.0	3.5e-91	306.4	0.0	2.1	1	1	1	2	2	2	2	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227828650|ref|YP_002830430.1|	-	4e-12	46.5	0.0	1.1e-11	45.1	0.0	1.8	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
FAA_hydrolase	PF01557.18	gi|227828651|ref|YP_002830431.1|	-	4.7e-40	137.6	0.0	5.5e-40	137.4	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Rieske	PF00355.26	gi|227828652|ref|YP_002830432.1|	-	0.00057	19.8	0.0	0.00061	19.7	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Hydantoinase_A	PF01968.18	gi|227828653|ref|YP_002830433.1|	-	9.1e-96	320.5	0.2	2.8e-94	315.6	0.0	2.1	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|227828653|ref|YP_002830433.1|	-	4.9e-51	173.0	0.1	8.4e-51	172.2	0.1	1.4	1	0	0	1	1	1	1	Hydantoinase/oxoprolinase	N-terminal	region
FGGY_N	PF00370.21	gi|227828653|ref|YP_002830433.1|	-	0.15	11.6	0.3	0.44	10.1	0.1	1.9	2	0	0	2	2	2	0	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FtsA	PF14450.6	gi|227828653|ref|YP_002830433.1|	-	0.15	12.5	0.7	1.9	8.9	0.0	2.8	3	0	0	3	3	3	0	Cell	division	protein	FtsA
ROK	PF00480.20	gi|227828653|ref|YP_002830433.1|	-	0.22	11.0	1.4	0.21	11.0	0.2	1.6	2	0	0	2	2	2	0	ROK	family
Hydantoinase_B	PF02538.14	gi|227828654|ref|YP_002830434.1|	-	4.5e-180	599.5	0.4	5.5e-180	599.2	0.4	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
SLAC1	PF03595.17	gi|227828655|ref|YP_002830435.1|	-	7.4e-11	41.9	52.6	2.1e-10	40.4	52.6	1.6	1	1	0	1	1	1	1	Voltage-dependent	anion	channel
DUF4083	PF13314.6	gi|227828656|ref|YP_002830436.1|	-	0.067	13.2	1.2	0.067	13.2	1.2	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4083)
TauE	PF01925.19	gi|227828657|ref|YP_002830437.1|	-	2e-20	73.5	10.7	2e-20	73.5	10.7	1.3	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF4375	PF14300.6	gi|227828658|ref|YP_002830438.1|	-	0.035	14.4	0.0	0.065	13.5	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4375)
RNA_pol_L	PF01193.24	gi|227828658|ref|YP_002830438.1|	-	0.16	11.4	0.1	0.18	11.2	0.1	1.3	1	1	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
ATP-sulfurylase	PF01747.17	gi|227828659|ref|YP_002830439.1|	-	6.8e-77	257.7	0.0	8.9e-77	257.3	0.0	1.2	1	0	0	1	1	1	1	ATP-sulfurylase
PUA_2	PF14306.6	gi|227828659|ref|YP_002830439.1|	-	1e-39	135.8	0.0	1.8e-39	135.0	0.0	1.3	1	0	0	1	1	1	1	PUA-like	domain
TF_Zn_Ribbon	PF08271.12	gi|227828659|ref|YP_002830439.1|	-	0.0039	16.7	0.2	0.01	15.4	0.2	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
PAPS_reduct	PF01507.19	gi|227828660|ref|YP_002830440.1|	-	1.6e-48	165.1	0.0	1.9e-48	164.8	0.0	1.1	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
Pyrophosphatase	PF00719.19	gi|227828660|ref|YP_002830440.1|	-	0.0021	17.9	0.1	0.0033	17.2	0.1	1.3	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
RsfS	PF02410.15	gi|227828660|ref|YP_002830440.1|	-	0.029	14.8	0.0	0.05	14.0	0.0	1.4	1	1	0	1	1	1	0	Ribosomal	silencing	factor	during	starvation
NIR_SIR	PF01077.22	gi|227828661|ref|YP_002830441.1|	-	1.5e-42	144.8	0.0	2.3e-40	137.7	0.0	2.5	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|227828661|ref|YP_002830441.1|	-	3e-21	75.0	0.1	4.1e-09	36.2	0.0	3.6	3	1	0	3	3	3	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
TP_methylase	PF00590.20	gi|227828662|ref|YP_002830442.1|	-	8.1e-44	150.1	0.0	1.1e-43	149.7	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Rhodanese	PF00581.20	gi|227828663|ref|YP_002830443.1|	-	1.2e-40	138.4	0.1	3.6e-20	72.5	0.0	2.2	2	0	0	2	2	2	2	Rhodanese-like	domain
RSD-2	PF07547.13	gi|227828664|ref|YP_002830444.1|	-	0.042	14.4	0.1	0.056	13.9	0.1	1.2	1	0	0	1	1	1	0	RSD-2	N-terminal	domain
Urm1	PF09138.11	gi|227828664|ref|YP_002830444.1|	-	0.067	13.5	0.4	0.091	13.1	0.3	1.4	1	1	0	1	1	1	0	Urm1	(Ubiquitin	related	modifier)
Pyr_redox_2	PF07992.14	gi|227828665|ref|YP_002830445.1|	-	1.3e-21	77.2	0.0	3e-21	75.9	0.0	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|227828665|ref|YP_002830445.1|	-	1.1e-05	25.4	0.5	0.19	11.7	0.0	3.2	2	1	1	3	3	3	2	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|227828665|ref|YP_002830445.1|	-	2.5e-05	24.7	0.3	0.36	11.4	0.0	3.1	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|227828665|ref|YP_002830445.1|	-	0.0015	17.7	1.4	1.3	8.0	0.7	2.6	2	1	1	3	3	3	2	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|227828665|ref|YP_002830445.1|	-	0.0025	16.6	0.2	4.6	5.8	0.0	3.0	3	0	0	3	3	3	1	HI0933-like	protein
Trp_halogenase	PF04820.14	gi|227828665|ref|YP_002830445.1|	-	0.0053	15.7	0.2	0.071	12.0	0.1	2.5	3	0	0	3	3	3	1	Tryptophan	halogenase
GIDA	PF01134.22	gi|227828665|ref|YP_002830445.1|	-	0.008	15.3	2.1	0.039	13.0	0.1	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|227828665|ref|YP_002830445.1|	-	0.024	13.9	1.8	0.62	9.3	0.6	2.7	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|227828665|ref|YP_002830445.1|	-	0.028	14.0	1.1	0.94	9.0	0.3	2.8	3	0	0	3	3	3	0	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|227828665|ref|YP_002830445.1|	-	0.09	12.0	0.2	2.2	7.4	0.1	2.2	2	0	0	2	2	2	0	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|227828665|ref|YP_002830445.1|	-	0.096	13.1	0.0	0.22	12.0	0.0	1.7	1	0	0	1	1	1	0	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|227828665|ref|YP_002830445.1|	-	0.16	12.2	0.1	0.34	11.2	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Rieske	PF00355.26	gi|227828666|ref|YP_002830446.1|	-	1.2e-13	50.8	0.1	1.4e-13	50.6	0.1	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|227828666|ref|YP_002830446.1|	-	1.1e-09	38.2	0.0	1.3e-09	37.9	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Lactamase_B	PF00753.27	gi|227828667|ref|YP_002830447.1|	-	1.7e-25	90.2	1.0	2.3e-25	89.8	1.0	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|227828667|ref|YP_002830447.1|	-	1.6e-05	24.5	0.0	2.6e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Asp_protease_2	PF13650.6	gi|227828667|ref|YP_002830447.1|	-	0.045	14.4	0.0	0.19	12.4	0.0	2.0	2	0	0	2	2	2	0	Aspartyl	protease
Lactamase_B_6	PF16661.5	gi|227828667|ref|YP_002830447.1|	-	0.078	12.4	0.1	0.13	11.7	0.1	1.3	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
DDE_Tnp_2	PF04693.12	gi|227828668|ref|YP_002830448.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227828668|ref|YP_002830448.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227828668|ref|YP_002830448.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
zinc_ribbon_2	PF13240.6	gi|227828669|ref|YP_002830449.1|	-	0.0022	17.7	3.5	0.0033	17.1	3.5	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|227828669|ref|YP_002830449.1|	-	0.006	16.0	1.7	0.0094	15.3	1.7	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|227828669|ref|YP_002830449.1|	-	0.006	17.3	0.2	0.0087	16.8	0.2	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
DZR	PF12773.7	gi|227828669|ref|YP_002830449.1|	-	0.011	15.8	1.3	0.016	15.2	1.3	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-C4_ClpX	PF06689.13	gi|227828669|ref|YP_002830449.1|	-	0.2	11.5	4.1	4.1	7.4	0.3	2.4	2	0	0	2	2	2	0	ClpX	C4-type	zinc	finger
Pho86	PF11124.8	gi|227828669|ref|YP_002830449.1|	-	0.22	11.0	3.5	0.33	10.4	3.5	1.2	1	0	0	1	1	1	0	Inorganic	phosphate	transporter	Pho86
RecR	PF02132.15	gi|227828669|ref|YP_002830449.1|	-	0.52	9.9	1.8	0.8	9.3	1.8	1.2	1	0	0	1	1	1	0	RecR	protein
Aldo_ket_red	PF00248.21	gi|227828670|ref|YP_002830450.1|	-	9.2e-66	222.0	0.0	1e-65	221.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
CMD	PF02627.20	gi|227828671|ref|YP_002830451.1|	-	8.1e-21	73.9	0.0	1.1e-20	73.5	0.0	1.2	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
DUF973	PF06157.11	gi|227828673|ref|YP_002830453.1|	-	0.0029	16.7	0.1	0.0029	16.7	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
XdhC_C	PF13478.6	gi|227828674|ref|YP_002830454.1|	-	3.4e-22	79.3	0.0	4.8e-22	78.8	0.0	1.2	1	0	0	1	1	1	1	XdhC	Rossmann	domain
PglD_N	PF17836.1	gi|227828674|ref|YP_002830454.1|	-	0.11	13.2	1.3	0.25	12.0	1.3	1.6	1	0	0	1	1	1	0	PglD	N-terminal	domain
ADH_N	PF08240.12	gi|227828675|ref|YP_002830455.1|	-	3e-24	85.0	0.2	5.7e-23	80.9	0.2	2.2	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227828675|ref|YP_002830455.1|	-	6.5e-16	58.5	0.0	8.5e-15	54.9	0.0	2.2	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227828675|ref|YP_002830455.1|	-	1.3e-12	48.9	0.0	2.2e-12	48.2	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|227828675|ref|YP_002830455.1|	-	0.00018	21.1	0.0	0.00045	19.8	0.0	1.6	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
Epimerase	PF01370.21	gi|227828675|ref|YP_002830455.1|	-	0.026	14.0	0.0	0.039	13.4	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.15	gi|227828675|ref|YP_002830455.1|	-	0.073	12.2	0.1	0.12	11.5	0.1	1.3	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Acyl-CoA_dh_1	PF00441.24	gi|227828676|ref|YP_002830456.1|	-	1.9e-42	145.0	4.3	3.5e-42	144.1	4.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|227828676|ref|YP_002830456.1|	-	1.5e-33	115.8	0.1	4.5e-33	114.3	0.1	1.9	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227828676|ref|YP_002830456.1|	-	2e-27	95.2	0.0	4e-27	94.3	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|227828676|ref|YP_002830456.1|	-	5.3e-21	75.3	2.7	1e-20	74.4	2.7	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.8	gi|227828676|ref|YP_002830456.1|	-	0.002	17.8	0.1	0.0051	16.5	0.1	1.7	1	1	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
CbbQ_C	PF08406.10	gi|227828676|ref|YP_002830456.1|	-	0.061	13.6	0.4	0.16	12.2	0.4	1.7	1	1	0	1	1	1	0	CbbQ/NirQ/NorQ	C-terminal
Acetyltransf_CG	PF14542.6	gi|227828676|ref|YP_002830456.1|	-	0.11	12.7	0.3	20	5.4	0.0	2.6	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
AMP-binding	PF00501.28	gi|227828677|ref|YP_002830457.1|	-	8.5e-90	301.4	0.0	9.9e-90	301.1	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227828677|ref|YP_002830457.1|	-	1.5e-16	61.1	0.0	2.6e-16	60.3	0.0	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Chalcone	PF02431.15	gi|227828677|ref|YP_002830457.1|	-	0.13	11.7	0.0	0.21	11.0	0.0	1.2	1	0	0	1	1	1	0	Chalcone-flavanone	isomerase
SinI	PF08671.10	gi|227828677|ref|YP_002830457.1|	-	3.3	7.6	6.3	11	6.0	0.3	3.0	3	0	0	3	3	3	0	Anti-repressor	SinI
Thiolase_N	PF00108.23	gi|227828678|ref|YP_002830458.1|	-	9.7e-30	103.8	0.0	2e-29	102.7	0.0	1.6	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227828678|ref|YP_002830458.1|	-	1.6e-07	31.0	0.2	1.8e-06	27.6	0.1	2.5	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|227828678|ref|YP_002830458.1|	-	1.4e-06	28.1	0.9	1.4e-06	28.1	0.9	3.0	3	1	1	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|227828678|ref|YP_002830458.1|	-	6.2e-05	22.8	0.3	0.0052	16.6	0.1	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
SpoVAD	PF07451.11	gi|227828678|ref|YP_002830458.1|	-	0.033	12.9	0.0	0.074	11.7	0.0	1.5	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AD	(SpoVAD)
DUF35_N	PF12172.8	gi|227828679|ref|YP_002830459.1|	-	9.4e-13	47.8	0.1	1.5e-12	47.1	0.1	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|227828679|ref|YP_002830459.1|	-	2.2e-12	46.8	0.4	3.1e-12	46.3	0.4	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
TackOD1	PF18551.1	gi|227828679|ref|YP_002830459.1|	-	0.0079	15.9	0.0	0.0088	15.7	0.0	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zf-TFIIB	PF13453.6	gi|227828679|ref|YP_002830459.1|	-	0.0089	15.3	0.2	5.1	6.5	0.0	2.5	2	0	0	2	2	2	2	Transcription	factor	zinc-finger
Auto_anti-p27	PF06677.12	gi|227828679|ref|YP_002830459.1|	-	0.048	13.8	2.0	0.11	12.6	2.0	1.6	1	1	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
TrpBP	PF02081.15	gi|227828679|ref|YP_002830459.1|	-	0.1	12.4	0.1	0.17	11.8	0.1	1.3	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein
CxC5	PF18718.1	gi|227828679|ref|YP_002830459.1|	-	0.1	12.7	0.1	1.7	8.8	0.0	2.1	1	1	1	2	2	2	0	CxC5	like	cysteine	cluster	associated	with	KDZ	transposases
CpXC	PF14353.6	gi|227828679|ref|YP_002830459.1|	-	0.18	11.8	1.0	0.36	10.9	0.0	1.9	1	1	0	1	1	1	0	CpXC	protein
HypA	PF01155.19	gi|227828679|ref|YP_002830459.1|	-	0.19	11.7	0.1	0.35	10.9	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PhnA_Zn_Ribbon	PF08274.12	gi|227828679|ref|YP_002830459.1|	-	0.22	11.5	2.1	1.2	9.2	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.12	gi|227828679|ref|YP_002830459.1|	-	0.3	10.6	2.2	6.2	6.4	0.5	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.19	gi|227828679|ref|YP_002830459.1|	-	0.35	10.7	4.3	7.5	6.4	0.5	2.3	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ACC	PF17848.1	gi|227828679|ref|YP_002830459.1|	-	1.5	9.0	5.8	0.79	9.9	0.3	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
DUF1936	PF09151.10	gi|227828679|ref|YP_002830459.1|	-	1.5	8.8	5.8	9.3	6.3	0.2	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1936)
Zn-ribbon_8	PF09723.10	gi|227828679|ref|YP_002830459.1|	-	1.6	8.9	6.1	2.9	8.1	0.2	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|227828679|ref|YP_002830459.1|	-	3	7.4	7.6	34	4.0	7.7	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
3HCDH_N	PF02737.18	gi|227828680|ref|YP_002830460.1|	-	1.1e-63	214.4	0.1	1.6e-63	213.9	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|227828680|ref|YP_002830460.1|	-	1e-38	131.8	0.1	2.7e-29	101.6	0.1	2.6	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|227828680|ref|YP_002830460.1|	-	0.00029	21.0	0.1	0.0024	18.0	0.0	2.2	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_2	PF07992.14	gi|227828680|ref|YP_002830460.1|	-	0.044	13.0	0.0	0.066	12.4	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Herpes_BBRF1	PF04793.12	gi|227828680|ref|YP_002830460.1|	-	0.047	12.7	0.0	0.15	11.1	0.1	1.7	2	0	0	2	2	2	0	BRRF1-like	protein
AlaDh_PNT_C	PF01262.21	gi|227828680|ref|YP_002830460.1|	-	0.049	12.9	0.3	0.087	12.1	0.3	1.5	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|227828680|ref|YP_002830460.1|	-	0.06	12.9	0.1	0.1	12.2	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Acetyltransf_1	PF00583.25	gi|227828681|ref|YP_002830461.1|	-	6.1e-20	71.6	0.0	7.3e-20	71.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|227828681|ref|YP_002830461.1|	-	9.9e-16	57.9	0.1	1.5e-15	57.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|227828681|ref|YP_002830461.1|	-	6.1e-15	55.3	0.0	7.5e-15	55.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|227828681|ref|YP_002830461.1|	-	2e-12	47.5	0.1	2.5e-12	47.2	0.1	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|227828681|ref|YP_002830461.1|	-	3.1e-10	40.2	0.0	5.5e-10	39.4	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|227828681|ref|YP_002830461.1|	-	3.3e-07	30.2	0.0	5.1e-07	29.6	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|227828681|ref|YP_002830461.1|	-	9.1e-07	29.6	0.0	1.2e-06	29.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|227828681|ref|YP_002830461.1|	-	0.00023	20.7	0.2	0.025	14.0	0.0	2.1	2	0	0	2	2	2	1	Putative	acetyl-transferase
Acetyltransf_16	PF05301.11	gi|227828681|ref|YP_002830461.1|	-	0.00038	20.3	0.0	0.00082	19.2	0.0	1.7	1	1	0	2	2	2	1	GNAT	acetyltransferase,	Mec-17
Acetyltransf_CG	PF14542.6	gi|227828681|ref|YP_002830461.1|	-	0.0027	17.8	0.0	0.0052	16.9	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_6	PF13480.7	gi|227828681|ref|YP_002830461.1|	-	0.005	17.0	0.0	0.0087	16.2	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|227828681|ref|YP_002830461.1|	-	0.0087	15.8	0.0	0.012	15.3	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_13	PF13880.6	gi|227828681|ref|YP_002830461.1|	-	0.013	15.5	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
AstA	PF04958.12	gi|227828681|ref|YP_002830461.1|	-	0.019	13.6	0.1	0.079	11.5	0.1	1.8	2	0	0	2	2	2	0	Arginine	N-succinyltransferase	beta	subunit
RNA_pol_Rpb2_4	PF04566.13	gi|227828681|ref|YP_002830461.1|	-	0.049	13.9	0.2	0.49	10.7	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
DUF4821	PF16092.5	gi|227828681|ref|YP_002830461.1|	-	0.053	13.2	0.1	0.075	12.7	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4821)
malic	PF00390.19	gi|227828682|ref|YP_002830462.1|	-	2.8e-27	95.7	0.5	1.5e-24	86.8	0.5	2.5	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Malic_M	PF03949.15	gi|227828682|ref|YP_002830462.1|	-	5.1e-23	81.7	0.1	2.9e-22	79.2	0.1	2.0	1	1	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|227828682|ref|YP_002830462.1|	-	0.0091	15.3	0.0	0.019	14.3	0.0	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Ldr_toxin	PF13940.6	gi|227828682|ref|YP_002830462.1|	-	0.091	12.8	0.4	0.22	11.6	0.4	1.6	1	0	0	1	1	1	0	Toxin	Ldr,	type	I	toxin-antitoxin	system
EamA	PF00892.20	gi|227828683|ref|YP_002830463.1|	-	1.6e-36	125.5	34.4	1.7e-22	80.0	12.5	2.3	2	1	0	2	2	2	2	EamA-like	transporter	family
DrsE	PF02635.15	gi|227828684|ref|YP_002830464.1|	-	0.00012	22.4	0.1	0.00018	21.8	0.1	1.3	1	1	0	1	1	1	1	DsrE/DsrF-like	family
ThiP_synth	PF10120.9	gi|227828684|ref|YP_002830464.1|	-	0.094	12.3	0.0	0.1	12.2	0.0	1.2	1	0	0	1	1	1	0	Thiamine-phosphate	synthase
DUF1727	PF08353.10	gi|227828684|ref|YP_002830464.1|	-	0.13	12.2	0.0	0.21	11.5	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1727)
COX15-CtaA	PF02628.15	gi|227828685|ref|YP_002830465.1|	-	0.0095	15.0	9.0	0.15	11.1	6.1	2.1	1	1	1	2	2	2	2	Cytochrome	oxidase	assembly	protein
MtrC	PF04211.13	gi|227828685|ref|YP_002830465.1|	-	0.069	12.2	5.9	0.023	13.8	2.7	1.8	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	C
MIase	PF02426.16	gi|227828686|ref|YP_002830466.1|	-	4.4e-18	65.2	0.0	5.4e-18	64.9	0.0	1.0	1	0	0	1	1	1	1	Muconolactone	delta-isomerase
GYD	PF08734.11	gi|227828686|ref|YP_002830466.1|	-	0.023	14.6	0.0	0.024	14.6	0.0	1.2	1	0	0	1	1	1	0	GYD	domain
AsnC_trans_reg	PF01037.21	gi|227828686|ref|YP_002830466.1|	-	0.033	14.2	0.0	0.047	13.7	0.0	1.4	1	1	0	1	1	1	0	Lrp/AsnC	ligand	binding	domain
RNase_P_Rpp14	PF01900.19	gi|227828686|ref|YP_002830466.1|	-	0.15	12.3	0.0	0.2	11.9	0.0	1.1	1	0	0	1	1	1	0	Rpp14/Pop5	family
Gpr1_Fun34_YaaH	PF01184.19	gi|227828687|ref|YP_002830467.1|	-	5.7e-43	146.9	30.5	1.9e-42	145.3	30.5	1.7	1	1	0	1	1	1	1	GPR1/FUN34/yaaH	family
AMP-binding	PF00501.28	gi|227828688|ref|YP_002830468.1|	-	2.1e-89	300.1	0.0	2.5e-89	299.8	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227828688|ref|YP_002830468.1|	-	5.9e-27	94.5	0.4	1.9e-26	92.8	0.1	2.1	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|227828688|ref|YP_002830468.1|	-	1.1e-20	73.3	2.5	2.4e-20	72.2	2.5	1.7	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
4HBT	PF03061.22	gi|227828689|ref|YP_002830469.1|	-	5.3e-13	49.1	0.0	6.6e-13	48.8	0.0	1.1	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.6	gi|227828689|ref|YP_002830469.1|	-	0.015	15.5	0.0	0.017	15.4	0.0	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
SBP56	PF05694.11	gi|227828690|ref|YP_002830470.1|	-	2.6e-205	682.5	0.0	3e-205	682.3	0.0	1.0	1	0	0	1	1	1	1	56kDa	selenium	binding	protein	(SBP56)
Lactonase	PF10282.9	gi|227828690|ref|YP_002830470.1|	-	0.032	13.5	0.0	0.35	10.1	0.0	2.2	1	1	0	1	1	1	0	Lactonase,	7-bladed	beta-propeller
DUF1264	PF06884.11	gi|227828690|ref|YP_002830470.1|	-	0.15	11.7	0.0	0.27	10.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1264)
Rad54_N	PF08658.10	gi|227828690|ref|YP_002830470.1|	-	0.17	12.1	0.0	0.31	11.2	0.0	1.3	1	0	0	1	1	1	0	Rad54	N	terminal
DDE_Tnp_2	PF04693.12	gi|227828691|ref|YP_002830471.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227828691|ref|YP_002830471.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227828691|ref|YP_002830471.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
MFS_1	PF07690.16	gi|227828693|ref|YP_002830473.1|	-	5.4e-30	104.5	43.7	5.4e-30	104.5	43.7	1.7	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|227828693|ref|YP_002830473.1|	-	1.5e-07	30.2	4.8	1.5e-07	30.2	4.8	2.1	2	0	0	2	2	2	1	Transmembrane	secretion	effector
MFS_1	PF07690.16	gi|227828694|ref|YP_002830474.1|	-	1.6e-25	89.8	56.8	1.7e-22	79.9	23.3	2.3	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227828694|ref|YP_002830474.1|	-	2.6e-21	76.0	33.6	4.7e-17	62.0	9.8	2.2	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
ABC_tran	PF00005.27	gi|227828695|ref|YP_002830475.1|	-	7.9e-33	113.9	0.0	1.6e-32	112.9	0.0	1.5	2	0	0	2	2	1	1	ABC	transporter
GlcV_C_terminal	PF17847.1	gi|227828695|ref|YP_002830475.1|	-	9.4e-30	102.9	2.4	1.2e-29	102.5	0.3	2.2	2	1	0	2	2	2	1	Glucose	ABC	transporter	C-terminal	domain
AAA_21	PF13304.6	gi|227828695|ref|YP_002830475.1|	-	1.1e-09	38.5	0.5	4e-05	23.6	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|227828695|ref|YP_002830475.1|	-	5.4e-07	30.1	0.0	5.4e-06	26.9	0.0	2.5	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
TOBE_2	PF08402.10	gi|227828695|ref|YP_002830475.1|	-	0.00014	22.0	0.0	0.00041	20.5	0.0	1.9	1	0	0	1	1	1	1	TOBE	domain
SMC_N	PF02463.19	gi|227828695|ref|YP_002830475.1|	-	0.0024	17.3	0.5	0.04	13.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.6	gi|227828695|ref|YP_002830475.1|	-	0.0027	17.9	0.4	0.015	15.5	0.4	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
OB_MalK	PF17912.1	gi|227828695|ref|YP_002830475.1|	-	0.012	16.4	0.1	0.061	14.2	0.1	2.3	1	0	0	1	1	1	0	MalK	OB	fold	domain
Cytidylate_kin	PF02224.18	gi|227828695|ref|YP_002830475.1|	-	0.026	14.2	0.0	0.05	13.3	0.0	1.5	1	0	0	1	1	1	0	Cytidylate	kinase
AAA_29	PF13555.6	gi|227828695|ref|YP_002830475.1|	-	0.045	13.5	0.0	0.097	12.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|227828695|ref|YP_002830475.1|	-	0.059	13.9	1.2	0.059	13.9	1.2	1.5	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|227828695|ref|YP_002830475.1|	-	0.069	13.2	0.1	0.18	11.9	0.1	1.7	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_24	PF13479.6	gi|227828695|ref|YP_002830475.1|	-	0.12	12.1	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|227828695|ref|YP_002830475.1|	-	0.19	11.9	0.1	1.1	9.4	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|227828696|ref|YP_002830476.1|	-	2.7e-13	50.1	40.7	1.1e-10	41.6	40.7	2.7	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|227828697|ref|YP_002830477.1|	-	1.5e-14	54.1	26.4	1.5e-14	54.1	26.4	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|227828698|ref|YP_002830478.1|	-	7.2e-11	42.6	12.1	7.2e-11	42.6	12.1	1.6	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Pilin_N	PF07790.11	gi|227828698|ref|YP_002830478.1|	-	0.0053	17.6	3.8	0.012	16.6	3.8	1.6	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
TcpE	PF12648.7	gi|227828698|ref|YP_002830478.1|	-	0.34	11.5	2.2	0.89	10.1	1.3	2.1	2	0	0	2	2	2	0	TcpE	family
B277	PF17623.2	gi|227828698|ref|YP_002830478.1|	-	0.78	8.8	8.7	1.2	8.2	8.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function
DUF3149	PF11346.8	gi|227828698|ref|YP_002830478.1|	-	1.2	8.8	5.8	2.4	7.8	5.8	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3149)
ANF_receptor	PF01094.28	gi|227828699|ref|YP_002830479.1|	-	8.7e-31	107.3	3.0	1.2e-30	106.8	3.0	1.2	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_6	PF13458.6	gi|227828699|ref|YP_002830479.1|	-	5.9e-29	101.8	6.5	9.9e-29	101.1	6.5	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
LppC	PF04348.13	gi|227828699|ref|YP_002830479.1|	-	2.4e-12	46.5	0.6	4.8e-12	45.5	0.4	1.5	1	1	1	2	2	2	1	LppC	putative	lipoprotein
Peripla_BP_5	PF13433.6	gi|227828699|ref|YP_002830479.1|	-	0.00015	20.9	0.5	0.00027	20.0	0.5	1.6	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
Sigma_reg_N	PF13800.6	gi|227828699|ref|YP_002830479.1|	-	0.033	14.5	0.4	0.067	13.5	0.4	1.5	1	0	0	1	1	1	0	Sigma	factor	regulator	N-terminal
CTX_RstB	PF07459.11	gi|227828699|ref|YP_002830479.1|	-	0.05	13.9	0.1	0.11	12.7	0.1	1.5	1	0	0	1	1	1	0	CTX	phage	RstB	protein
DAO_C	PF16901.5	gi|227828699|ref|YP_002830479.1|	-	0.053	13.4	0.1	17	5.3	0.0	3.1	3	0	0	3	3	3	0	C-terminal	domain	of	alpha-glycerophosphate	oxidase
DapB_N	PF01113.20	gi|227828699|ref|YP_002830479.1|	-	0.084	13.0	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
DUF4811	PF16069.5	gi|227828699|ref|YP_002830479.1|	-	0.12	12.2	4.4	0.39	10.6	4.4	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4811)
ABC_tran	PF00005.27	gi|227828700|ref|YP_002830480.1|	-	4.4e-32	111.5	0.0	5.6e-32	111.1	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828700|ref|YP_002830480.1|	-	1.9e-11	44.3	4.1	6.7e-05	22.8	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828700|ref|YP_002830480.1|	-	2.2e-08	33.8	0.1	0.00045	19.7	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227828700|ref|YP_002830480.1|	-	6.5e-07	29.0	0.1	1.3e-06	28.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
BCA_ABC_TP_C	PF12399.8	gi|227828700|ref|YP_002830480.1|	-	1.3e-06	28.2	0.0	2.1e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.6	gi|227828700|ref|YP_002830480.1|	-	4.8e-06	27.2	0.5	8.8e-06	26.4	0.2	1.5	2	0	0	2	2	1	1	AAA	domain
AAA_15	PF13175.6	gi|227828700|ref|YP_002830480.1|	-	7.2e-06	25.9	0.6	0.00012	22.0	0.1	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|227828700|ref|YP_002830480.1|	-	0.0011	18.9	0.1	0.0018	18.2	0.1	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|227828700|ref|YP_002830480.1|	-	0.0078	16.5	0.2	0.045	14.0	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|227828700|ref|YP_002830480.1|	-	0.012	16.0	0.0	0.016	15.6	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|227828700|ref|YP_002830480.1|	-	0.015	14.9	0.0	0.024	14.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|227828700|ref|YP_002830480.1|	-	0.017	14.9	0.0	0.073	12.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Gtr1_RagA	PF04670.12	gi|227828700|ref|YP_002830480.1|	-	0.032	13.6	0.1	1.3	8.4	0.0	2.2	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
Rad17	PF03215.15	gi|227828700|ref|YP_002830480.1|	-	0.032	14.1	0.0	0.051	13.5	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
MMR_HSR1	PF01926.23	gi|227828700|ref|YP_002830480.1|	-	0.062	13.4	0.2	0.15	12.2	0.1	1.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
MukB	PF04310.12	gi|227828700|ref|YP_002830480.1|	-	0.08	12.7	0.0	0.41	10.4	0.0	1.9	2	0	0	2	2	2	0	MukB	N-terminal
AAA_7	PF12775.7	gi|227828700|ref|YP_002830480.1|	-	0.092	12.2	0.1	0.14	11.6	0.1	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|227828700|ref|YP_002830480.1|	-	0.1	11.9	0.0	0.19	11.1	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.29	gi|227828700|ref|YP_002830480.1|	-	0.1	13.0	0.2	0.25	11.7	0.2	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|227828700|ref|YP_002830480.1|	-	0.16	11.9	0.4	0.37	10.7	0.0	1.8	2	1	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_33	PF13671.6	gi|227828700|ref|YP_002830480.1|	-	0.2	11.8	0.0	0.48	10.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|227828701|ref|YP_002830481.1|	-	1.4e-33	116.3	0.0	2.1e-33	115.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828701|ref|YP_002830481.1|	-	3.3e-13	50.1	3.4	5.7e-06	26.4	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828701|ref|YP_002830481.1|	-	3.1e-07	30.1	2.3	4.5e-06	26.3	2.3	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|227828701|ref|YP_002830481.1|	-	1.3e-06	28.4	5.4	0.00035	20.4	0.4	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227828701|ref|YP_002830481.1|	-	1.6e-05	25.2	0.6	0.0001	22.6	0.6	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|227828701|ref|YP_002830481.1|	-	0.0004	20.9	4.8	0.00086	19.9	4.8	1.7	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|227828701|ref|YP_002830481.1|	-	0.0014	18.6	0.2	0.0027	17.6	0.1	1.8	1	1	0	1	1	1	1	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|227828701|ref|YP_002830481.1|	-	0.0015	18.3	0.2	0.0027	17.4	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_24	PF13479.6	gi|227828701|ref|YP_002830481.1|	-	0.0047	16.7	0.1	0.013	15.3	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_27	PF13514.6	gi|227828701|ref|YP_002830481.1|	-	0.0094	15.6	0.0	0.015	14.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|227828701|ref|YP_002830481.1|	-	0.0096	15.7	0.0	0.022	14.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|227828701|ref|YP_002830481.1|	-	0.011	15.1	0.1	0.021	14.2	0.1	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
T2SSE	PF00437.20	gi|227828701|ref|YP_002830481.1|	-	0.011	14.8	0.1	0.02	13.9	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_14	PF13173.6	gi|227828701|ref|YP_002830481.1|	-	0.011	15.7	0.6	0.048	13.7	0.6	2.1	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|227828701|ref|YP_002830481.1|	-	0.012	15.7	0.4	0.027	14.5	0.4	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ATPase_2	PF01637.18	gi|227828701|ref|YP_002830481.1|	-	0.014	15.3	0.5	0.027	14.4	0.4	1.8	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_33	PF13671.6	gi|227828701|ref|YP_002830481.1|	-	0.019	15.1	0.0	0.032	14.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|227828701|ref|YP_002830481.1|	-	0.02	14.7	0.5	0.21	11.3	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|227828701|ref|YP_002830481.1|	-	0.022	15.1	0.0	0.043	14.2	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
Dynamin_N	PF00350.23	gi|227828701|ref|YP_002830481.1|	-	0.025	14.6	1.3	0.096	12.7	1.3	1.9	1	1	0	1	1	1	0	Dynamin	family
RsgA_GTPase	PF03193.16	gi|227828701|ref|YP_002830481.1|	-	0.03	14.2	0.1	0.06	13.2	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
PPV_E1_C	PF00519.17	gi|227828701|ref|YP_002830481.1|	-	0.036	12.9	0.1	0.055	12.3	0.1	1.2	1	0	0	1	1	1	0	Papillomavirus	helicase
NACHT	PF05729.12	gi|227828701|ref|YP_002830481.1|	-	0.041	13.8	0.5	0.1	12.5	0.1	1.8	2	0	0	2	2	2	0	NACHT	domain
AAA_18	PF13238.6	gi|227828701|ref|YP_002830481.1|	-	0.051	14.1	0.3	0.097	13.2	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
Pox_A32	PF04665.12	gi|227828701|ref|YP_002830481.1|	-	0.067	12.6	0.7	0.12	11.8	0.1	1.6	2	0	0	2	2	2	0	Poxvirus	A32	protein
ABC_ATPase	PF09818.9	gi|227828701|ref|YP_002830481.1|	-	0.11	11.3	0.1	0.95	8.2	0.1	2.2	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
SbcCD_C	PF13558.6	gi|227828701|ref|YP_002830481.1|	-	0.14	12.4	0.0	1.6	9.0	0.0	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_7	PF12775.7	gi|227828701|ref|YP_002830481.1|	-	0.15	11.5	0.1	0.29	10.6	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|227828701|ref|YP_002830481.1|	-	0.16	12.3	0.0	0.3	11.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
cobW	PF02492.19	gi|227828701|ref|YP_002830481.1|	-	0.2	11.2	0.6	0.36	10.4	0.6	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NB-ARC	PF00931.22	gi|227828701|ref|YP_002830481.1|	-	0.27	10.4	0.7	0.48	9.6	0.1	1.6	2	0	0	2	2	2	0	NB-ARC	domain
BPD_transp_2	PF02653.16	gi|227828702|ref|YP_002830482.1|	-	5.5e-36	124.1	38.2	7e-36	123.8	38.2	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|227828703|ref|YP_002830483.1|	-	1.5e-41	142.4	36.0	1.7e-41	142.1	36.0	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF2062	PF09835.9	gi|227828703|ref|YP_002830483.1|	-	0.008	16.0	3.0	0.008	16.0	3.0	3.6	2	1	1	3	3	3	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
Coa1	PF08695.10	gi|227828703|ref|YP_002830483.1|	-	0.077	12.8	0.0	0.16	11.7	0.0	1.6	1	0	0	1	1	1	0	Cytochrome	oxidase	complex	assembly	protein	1
PaREP1	PF05942.11	gi|227828705|ref|YP_002830485.1|	-	5.8e-21	74.6	0.0	7.9e-21	74.1	0.0	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Mrpl_C	PF18502.1	gi|227828705|ref|YP_002830485.1|	-	0.011	16.0	3.5	0.62	10.4	0.2	2.3	2	0	0	2	2	2	0	54S	ribosomal	protein	L8	C-terminal	domain
Creatininase	PF02633.14	gi|227828707|ref|YP_002830487.1|	-	1.2e-52	178.8	0.0	1.5e-52	178.5	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
AAA	PF00004.29	gi|227828708|ref|YP_002830488.1|	-	2.2e-75	251.4	0.0	8.2e-37	126.6	0.0	2.6	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|227828708|ref|YP_002830488.1|	-	1.3e-14	54.2	0.0	7.9e-07	28.9	0.0	2.9	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_18	PF13238.6	gi|227828708|ref|YP_002830488.1|	-	3.3e-14	53.6	0.0	1e-05	26.1	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_5	PF07728.14	gi|227828708|ref|YP_002830488.1|	-	4.6e-14	52.6	2.6	1.4e-05	25.1	0.5	4.2	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|227828708|ref|YP_002830488.1|	-	4.6e-13	49.9	0.3	5.2e-05	23.7	0.0	3.4	2	2	0	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227828708|ref|YP_002830488.1|	-	5.5e-13	49.4	7.0	0.0018	18.5	2.5	5.0	2	2	2	4	4	3	2	AAA	domain
AAA_lid_3	PF17862.1	gi|227828708|ref|YP_002830488.1|	-	1e-12	47.6	0.0	7e-06	25.8	0.0	2.6	2	0	0	2	2	2	2	AAA+	lid	domain
AAA_14	PF13173.6	gi|227828708|ref|YP_002830488.1|	-	1.5e-11	44.5	0.0	1.7e-05	24.9	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|227828708|ref|YP_002830488.1|	-	4.5e-11	43.1	0.0	1.8e-05	24.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|227828708|ref|YP_002830488.1|	-	6.2e-11	42.1	0.1	0.00019	20.8	0.0	2.7	2	1	1	3	3	3	2	TIP49	P-loop	domain
AAA_28	PF13521.6	gi|227828708|ref|YP_002830488.1|	-	8.5e-10	39.1	0.1	0.00095	19.4	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
RNA_helicase	PF00910.22	gi|227828708|ref|YP_002830488.1|	-	9e-10	38.9	0.0	0.0012	19.2	0.0	3.0	3	0	0	3	3	2	2	RNA	helicase
AAA_7	PF12775.7	gi|227828708|ref|YP_002830488.1|	-	3.3e-09	36.5	0.0	0.00043	19.9	0.0	3.4	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_2	PF07724.14	gi|227828708|ref|YP_002830488.1|	-	4.1e-09	36.8	0.0	0.00015	21.9	0.0	2.9	2	1	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_24	PF13479.6	gi|227828708|ref|YP_002830488.1|	-	5.8e-09	35.9	1.2	0.0039	16.9	0.0	3.5	2	2	0	2	2	2	2	AAA	domain
DUF815	PF05673.13	gi|227828708|ref|YP_002830488.1|	-	6.3e-09	35.4	0.0	0.0021	17.3	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
IstB_IS21	PF01695.17	gi|227828708|ref|YP_002830488.1|	-	6.6e-09	35.7	0.2	0.003	17.3	0.0	3.5	3	1	1	4	4	3	2	IstB-like	ATP	binding	protein
Sigma54_activ_2	PF14532.6	gi|227828708|ref|YP_002830488.1|	-	9e-09	35.6	0.0	3.3e-05	24.0	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
Cytidylate_kin	PF02224.18	gi|227828708|ref|YP_002830488.1|	-	3.1e-08	33.6	0.0	0.0049	16.6	0.0	2.8	3	0	0	3	3	2	2	Cytidylate	kinase
SKI	PF01202.22	gi|227828708|ref|YP_002830488.1|	-	1.1e-07	32.1	0.0	0.02	15.0	0.0	2.7	2	0	0	2	2	2	2	Shikimate	kinase
Sigma54_activat	PF00158.26	gi|227828708|ref|YP_002830488.1|	-	1.3e-07	31.5	0.3	0.58	9.8	0.0	3.7	4	0	0	4	4	3	2	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|227828708|ref|YP_002830488.1|	-	1.6e-07	31.3	0.0	0.015	15.3	0.0	2.5	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Mg_chelatase	PF01078.21	gi|227828708|ref|YP_002830488.1|	-	3e-07	30.0	0.1	0.024	14.0	0.0	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_17	PF13207.6	gi|227828708|ref|YP_002830488.1|	-	5.8e-07	30.0	0.0	0.055	13.9	0.0	3.1	3	0	0	3	3	2	2	AAA	domain
Zeta_toxin	PF06414.12	gi|227828708|ref|YP_002830488.1|	-	1.2e-06	28.0	0.1	0.26	10.5	0.0	3.2	3	0	0	3	3	3	2	Zeta	toxin
TniB	PF05621.11	gi|227828708|ref|YP_002830488.1|	-	1.9e-06	27.4	1.0	0.0059	16.0	0.0	3.9	4	0	0	4	4	4	1	Bacterial	TniB	protein
Rad17	PF03215.15	gi|227828708|ref|YP_002830488.1|	-	7.2e-06	26.1	0.1	0.1	12.5	0.0	3.6	3	2	0	3	3	3	2	Rad17	P-loop	domain
Parvo_NS1	PF01057.17	gi|227828708|ref|YP_002830488.1|	-	8.2e-06	25.1	0.1	0.054	12.6	0.0	2.3	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
ATPase_2	PF01637.18	gi|227828708|ref|YP_002830488.1|	-	9.8e-06	25.6	1.1	0.12	12.3	0.1	4.1	3	2	0	3	3	3	1	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|227828708|ref|YP_002830488.1|	-	1.3e-05	24.5	0.1	0.21	10.7	0.0	4.2	4	1	0	4	4	4	1	NB-ARC	domain
ABC_tran	PF00005.27	gi|227828708|ref|YP_002830488.1|	-	2.1e-05	25.1	0.0	0.19	12.3	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
AAA_25	PF13481.6	gi|227828708|ref|YP_002830488.1|	-	3.2e-05	23.6	3.4	0.18	11.4	0.0	3.8	4	0	0	4	4	4	2	AAA	domain
Cytidylate_kin2	PF13189.6	gi|227828708|ref|YP_002830488.1|	-	6.4e-05	23.2	0.0	0.074	13.2	0.0	2.7	3	0	0	3	3	2	1	Cytidylate	kinase-like	family
AAA_3	PF07726.11	gi|227828708|ref|YP_002830488.1|	-	9.3e-05	22.3	0.0	0.65	9.9	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|227828708|ref|YP_002830488.1|	-	9.6e-05	22.2	4.4	0.083	12.6	0.4	3.6	2	2	0	2	2	2	2	AAA	domain
AAA_11	PF13086.6	gi|227828708|ref|YP_002830488.1|	-	0.0001	22.2	0.0	0.5	10.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
NTPase_1	PF03266.15	gi|227828708|ref|YP_002830488.1|	-	0.00013	21.9	0.3	0.37	10.7	0.0	3.4	3	0	0	3	3	3	1	NTPase
NACHT	PF05729.12	gi|227828708|ref|YP_002830488.1|	-	0.00016	21.6	0.6	0.74	9.7	0.1	3.4	3	1	1	4	4	2	2	NACHT	domain
PhoH	PF02562.16	gi|227828708|ref|YP_002830488.1|	-	0.00018	21.0	0.2	0.3	10.5	0.1	2.9	2	0	0	2	2	2	1	PhoH-like	protein
Bac_DnaA	PF00308.18	gi|227828708|ref|YP_002830488.1|	-	0.00021	21.2	0.1	1	9.1	0.0	2.9	2	1	0	2	2	2	2	Bacterial	dnaA	protein
KTI12	PF08433.10	gi|227828708|ref|YP_002830488.1|	-	0.00033	20.2	0.6	0.28	10.6	0.0	2.9	3	0	0	3	3	2	1	Chromatin	associated	protein	KTI12
ATPase	PF06745.13	gi|227828708|ref|YP_002830488.1|	-	0.00053	19.4	4.4	3.4	7.0	0.1	4.3	3	1	1	4	4	4	0	KaiC
dNK	PF01712.19	gi|227828708|ref|YP_002830488.1|	-	0.00078	19.4	0.0	0.2	11.5	0.0	2.5	2	0	0	2	2	2	1	Deoxynucleoside	kinase
Vps4_C	PF09336.10	gi|227828708|ref|YP_002830488.1|	-	0.00079	19.4	0.1	0.16	12.0	0.0	3.2	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_19	PF13245.6	gi|227828708|ref|YP_002830488.1|	-	0.00084	19.7	6.8	0.34	11.2	0.0	3.8	3	1	0	4	4	4	2	AAA	domain
PduV-EutP	PF10662.9	gi|227828708|ref|YP_002830488.1|	-	0.0012	18.6	0.0	1.7	8.4	0.0	2.5	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_6	PF12774.7	gi|227828708|ref|YP_002830488.1|	-	0.0014	17.7	0.0	0.8	8.6	0.0	2.6	2	0	0	2	2	2	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Viral_helicase1	PF01443.18	gi|227828708|ref|YP_002830488.1|	-	0.0014	18.4	0.0	0.13	12.0	0.0	2.7	3	0	0	3	3	2	1	Viral	(Superfamily	1)	RNA	helicase
KAP_NTPase	PF07693.14	gi|227828708|ref|YP_002830488.1|	-	0.0019	17.5	1.4	0.34	10.1	0.1	3.4	2	2	1	4	4	4	1	KAP	family	P-loop	domain
RsgA_GTPase	PF03193.16	gi|227828708|ref|YP_002830488.1|	-	0.0019	18.1	0.0	1.3	8.9	0.0	2.9	3	0	0	3	3	2	1	RsgA	GTPase
IPT	PF01745.16	gi|227828708|ref|YP_002830488.1|	-	0.0029	17.0	0.0	1.8	7.9	0.0	2.5	2	0	0	2	2	2	1	Isopentenyl	transferase
MMR_HSR1	PF01926.23	gi|227828708|ref|YP_002830488.1|	-	0.0031	17.6	0.3	2.7	8.1	0.0	3.1	3	0	0	3	3	2	0	50S	ribosome-binding	GTPase
CPT	PF07931.12	gi|227828708|ref|YP_002830488.1|	-	0.0033	17.3	0.0	2.1	8.2	0.0	2.4	2	0	0	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
AAA_29	PF13555.6	gi|227828708|ref|YP_002830488.1|	-	0.0042	16.8	0.1	3.9	7.3	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
T2SSE	PF00437.20	gi|227828708|ref|YP_002830488.1|	-	0.006	15.7	0.0	0.5	9.4	0.0	2.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
Phg_2220_C	PF09524.10	gi|227828708|ref|YP_002830488.1|	-	0.0061	16.6	0.1	1.3	9.1	0.0	2.9	2	1	0	2	2	2	1	Conserved	phage	C-terminus	(Phg_2220_C)
ADK	PF00406.22	gi|227828708|ref|YP_002830488.1|	-	0.0066	16.6	0.0	2.4	8.2	0.0	3.0	2	0	0	2	2	2	1	Adenylate	kinase
Hydin_ADK	PF17213.3	gi|227828708|ref|YP_002830488.1|	-	0.0079	16.5	0.0	1.6	9.0	0.0	2.3	2	0	0	2	2	2	1	Hydin	Adenylate	kinase-like	domain
6PF2K	PF01591.18	gi|227828708|ref|YP_002830488.1|	-	0.0082	15.5	0.0	1.1	8.5	0.0	3.1	3	0	0	3	3	2	1	6-phosphofructo-2-kinase
DUF2075	PF09848.9	gi|227828708|ref|YP_002830488.1|	-	0.009	15.3	0.0	3	7.0	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
APS_kinase	PF01583.20	gi|227828708|ref|YP_002830488.1|	-	0.01	15.7	0.0	3.9	7.3	0.0	2.4	2	0	0	2	2	2	0	Adenylylsulphate	kinase
MCM	PF00493.23	gi|227828708|ref|YP_002830488.1|	-	0.012	14.8	0.0	15	4.5	0.0	3.3	3	1	0	3	3	3	0	MCM	P-loop	domain
MIG-14_Wnt-bd	PF06664.12	gi|227828708|ref|YP_002830488.1|	-	0.012	14.8	0.9	0.02	14.1	0.9	1.2	1	0	0	1	1	1	0	Wnt-binding	factor	required	for	Wnt	secretion
SRP54	PF00448.22	gi|227828708|ref|YP_002830488.1|	-	0.015	15.0	0.4	3.8	7.1	0.1	2.8	3	0	0	3	3	2	0	SRP54-type	protein,	GTPase	domain
Roc	PF08477.13	gi|227828708|ref|YP_002830488.1|	-	0.025	14.8	0.2	12	6.1	0.0	2.9	3	0	0	3	3	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_23	PF13476.6	gi|227828708|ref|YP_002830488.1|	-	0.031	14.8	6.3	1.4	9.3	0.0	3.1	4	0	0	4	4	2	0	AAA	domain
Guanylate_kin	PF00625.21	gi|227828708|ref|YP_002830488.1|	-	0.032	13.9	0.0	7.9	6.1	0.0	2.9	2	0	0	2	2	2	0	Guanylate	kinase
ResIII	PF04851.15	gi|227828708|ref|YP_002830488.1|	-	0.037	14.0	0.4	11	5.9	0.0	2.9	3	1	0	3	3	2	0	Type	III	restriction	enzyme,	res	subunit
CLP1_P	PF16575.5	gi|227828708|ref|YP_002830488.1|	-	0.084	12.7	0.1	9.3	6.0	0.0	2.6	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
SMC_N	PF02463.19	gi|227828708|ref|YP_002830488.1|	-	0.19	11.1	0.5	11	5.4	0.0	2.8	3	0	0	3	3	2	0	RecF/RecN/SMC	N	terminal	domain
DEAD	PF00270.29	gi|227828708|ref|YP_002830488.1|	-	0.24	11.2	2.3	32	4.2	0.0	3.8	4	0	0	4	4	4	0	DEAD/DEAH	box	helicase
AAA_21	PF13304.6	gi|227828708|ref|YP_002830488.1|	-	2	8.2	10.3	3.1	7.5	0.1	3.9	3	2	2	5	5	4	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
MS_channel	PF00924.18	gi|227828710|ref|YP_002830490.1|	-	3.3e-18	66.0	9.3	3.3e-18	66.0	9.3	1.7	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Strabismus	PF06638.11	gi|227828710|ref|YP_002830490.1|	-	1.5	7.4	7.6	2.1	6.9	7.6	1.1	1	0	0	1	1	1	0	Strabismus	protein
DUF3211	PF11485.8	gi|227828711|ref|YP_002830491.1|	-	9.6e-26	90.6	0.0	1.1e-25	90.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
HTH_45	PF14947.6	gi|227828712|ref|YP_002830492.1|	-	2.6e-17	62.6	0.4	3.4e-17	62.2	0.4	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|227828712|ref|YP_002830492.1|	-	1.4e-05	24.9	0.1	1.7e-05	24.7	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF1495	PF07381.11	gi|227828712|ref|YP_002830492.1|	-	0.026	14.3	0.2	0.04	13.7	0.1	1.5	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_IclR	PF09339.10	gi|227828712|ref|YP_002830492.1|	-	0.062	13.1	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|227828712|ref|YP_002830492.1|	-	0.074	12.9	0.1	0.32	10.9	0.0	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF3781	PF12636.7	gi|227828712|ref|YP_002830492.1|	-	0.35	10.8	2.7	4.2	7.3	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3781)
TrkA_N	PF02254.18	gi|227828713|ref|YP_002830493.1|	-	2.4e-13	50.4	0.3	4.3e-13	49.5	0.3	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|227828713|ref|YP_002830493.1|	-	8.7e-08	31.9	0.5	3e-07	30.2	0.0	2.2	3	0	0	3	3	3	1	TrkA-C	domain
Ion_trans_2	PF07885.16	gi|227828713|ref|YP_002830493.1|	-	1	9.4	8.3	2	8.4	8.3	1.5	1	0	0	1	1	1	0	Ion	channel
Oxidored_molyb	PF00174.19	gi|227828714|ref|YP_002830494.1|	-	1.1e-34	119.5	0.1	2.2e-34	118.5	0.1	1.4	1	1	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
TMEM154	PF15102.6	gi|227828715|ref|YP_002830495.1|	-	8.3	6.3	10.6	0.36	10.7	0.4	2.8	2	1	1	3	3	3	0	TMEM154	protein	family
Molybdopterin	PF00384.22	gi|227828716|ref|YP_002830496.1|	-	1.6e-87	294.2	0.0	2.1e-87	293.9	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|227828716|ref|YP_002830496.1|	-	5.7e-21	74.6	0.0	2.6e-20	72.5	0.0	2.0	2	0	0	2	2	2	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|227828716|ref|YP_002830496.1|	-	2.6e-18	65.7	0.3	2.6e-18	65.7	0.3	2.3	2	0	0	2	2	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer2_4	PF13510.6	gi|227828716|ref|YP_002830496.1|	-	2.2e-16	59.7	0.0	4.9e-16	58.6	0.0	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4	PF00037.27	gi|227828716|ref|YP_002830496.1|	-	2.9e-11	42.7	19.4	4.4e-06	26.3	3.5	3.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828716|ref|YP_002830496.1|	-	1.4e-08	34.7	6.4	1.4e-08	34.7	6.4	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer2	PF00111.27	gi|227828716|ref|YP_002830496.1|	-	1.7e-07	31.1	4.2	2.3e-07	30.7	0.1	2.8	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_10	PF13237.6	gi|227828716|ref|YP_002830496.1|	-	2e-07	31.0	12.5	0.00029	20.9	2.2	3.1	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|227828716|ref|YP_002830496.1|	-	4.3e-07	29.4	0.8	4.3e-07	29.4	0.8	2.1	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Fer4_6	PF12837.7	gi|227828716|ref|YP_002830496.1|	-	7.5e-07	29.0	20.3	0.00027	20.9	3.3	3.2	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227828716|ref|YP_002830496.1|	-	2.1e-05	25.0	12.4	2.1e-05	25.0	12.4	3.6	1	1	3	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828716|ref|YP_002830496.1|	-	0.00014	21.9	23.5	0.00018	21.6	12.8	3.8	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828716|ref|YP_002830496.1|	-	0.00096	20.0	16.9	0.006	17.5	3.6	3.8	3	1	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|227828716|ref|YP_002830496.1|	-	0.0022	18.0	15.2	0.0071	16.4	1.9	3.6	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227828716|ref|YP_002830496.1|	-	0.0026	17.9	7.9	0.075	13.2	0.9	2.8	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|227828716|ref|YP_002830496.1|	-	0.0061	17.1	6.5	0.63	10.6	0.2	2.8	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|227828716|ref|YP_002830496.1|	-	0.0062	17.0	10.8	0.0062	17.0	10.8	3.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227828716|ref|YP_002830496.1|	-	0.046	14.5	5.6	0.72	10.6	1.7	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|227828716|ref|YP_002830496.1|	-	0.15	12.9	12.1	1.1	10.2	1.1	3.1	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828716|ref|YP_002830496.1|	-	0.3	11.7	19.1	0.67	10.5	2.5	3.1	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
DUF1641	PF07849.11	gi|227828717|ref|YP_002830497.1|	-	9.4e-15	54.2	0.1	1.7e-14	53.4	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
TIMELESS	PF04821.14	gi|227828717|ref|YP_002830497.1|	-	0.037	13.3	0.1	0.81	8.9	0.1	2.0	1	1	1	2	2	2	0	Timeless	protein
CARD_2	PF16739.5	gi|227828717|ref|YP_002830497.1|	-	0.12	12.4	0.0	0.25	11.3	0.0	1.6	2	1	0	2	2	2	0	Caspase	recruitment	domain
FdhD-NarQ	PF02634.15	gi|227828718|ref|YP_002830498.1|	-	2.2e-73	246.8	0.0	2.6e-73	246.6	0.0	1.0	1	0	0	1	1	1	1	FdhD/NarQ	family
PPDK_N	PF01326.19	gi|227828719|ref|YP_002830499.1|	-	3.2e-72	243.6	0.5	3.9e-72	243.3	0.5	1.0	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
ETF_QO	PF05187.13	gi|227828720|ref|YP_002830500.1|	-	2e-12	47.2	1.5	2.4e-12	46.9	1.5	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_7	PF12838.7	gi|227828720|ref|YP_002830500.1|	-	2.2e-09	37.8	6.1	0.00013	22.5	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828720|ref|YP_002830500.1|	-	2.8e-08	33.7	9.8	4.9e-08	33.0	9.8	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828720|ref|YP_002830500.1|	-	3.8e-08	33.0	13.3	7.4e-05	22.6	3.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|227828720|ref|YP_002830500.1|	-	2e-07	31.0	9.5	8.6e-07	29.0	10.1	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828720|ref|YP_002830500.1|	-	5.1e-07	29.2	18.7	1.2e-05	24.9	3.6	3.2	3	0	0	3	3	3	3	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|227828720|ref|YP_002830500.1|	-	1.8e-06	27.8	18.2	0.0025	17.8	3.6	2.6	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|227828720|ref|YP_002830500.1|	-	2.9e-06	27.3	11.1	7.5e-05	22.9	1.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227828720|ref|YP_002830500.1|	-	7.1e-05	23.2	4.5	0.0019	18.6	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227828720|ref|YP_002830500.1|	-	0.00098	19.2	13.4	0.0042	17.2	13.4	2.2	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828720|ref|YP_002830500.1|	-	0.0033	18.3	11.2	0.0052	17.7	0.8	2.7	2	1	1	3	3	3	1	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|227828720|ref|YP_002830500.1|	-	0.035	15.0	15.4	0.12	13.4	3.4	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|227828720|ref|YP_002830500.1|	-	0.21	12.2	12.3	8.8	7.0	12.9	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|227828720|ref|YP_002830500.1|	-	3.6	7.8	9.2	9.7	6.4	9.2	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
DAO	PF01266.24	gi|227828721|ref|YP_002830501.1|	-	1.5e-16	61.0	1.6	3e-07	30.3	0.1	2.7	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|227828721|ref|YP_002830501.1|	-	1.1e-11	44.2	3.0	1.4e-07	30.5	0.6	2.4	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|227828721|ref|YP_002830501.1|	-	1.8e-11	43.8	2.7	8.6e-11	41.6	2.7	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|227828721|ref|YP_002830501.1|	-	7.5e-11	42.0	0.5	1.1e-10	41.5	0.5	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|227828721|ref|YP_002830501.1|	-	1e-09	38.0	0.3	1e-09	38.0	0.3	1.7	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|227828721|ref|YP_002830501.1|	-	2.1e-08	33.8	3.1	3.4e-07	29.8	3.1	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|227828721|ref|YP_002830501.1|	-	1.6e-07	30.9	2.9	3.5e-05	23.2	2.9	2.8	2	1	0	2	2	2	1	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|227828721|ref|YP_002830501.1|	-	2.7e-07	30.0	1.3	2.7e-07	30.0	1.3	1.9	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|227828721|ref|YP_002830501.1|	-	5.1e-06	26.6	0.2	1.1e-05	25.5	0.2	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|227828721|ref|YP_002830501.1|	-	1.4e-05	24.4	1.6	3.6e-05	23.0	1.6	1.6	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|227828721|ref|YP_002830501.1|	-	3e-05	24.5	1.6	0.011	16.2	0.2	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|227828721|ref|YP_002830501.1|	-	8.7e-05	21.9	0.2	0.00017	20.9	0.2	1.5	1	0	0	1	1	1	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|227828721|ref|YP_002830501.1|	-	0.001	18.4	0.0	0.0022	17.3	0.0	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Amino_oxidase	PF01593.24	gi|227828721|ref|YP_002830501.1|	-	0.0016	17.8	0.6	0.0029	17.0	0.0	1.6	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.6	gi|227828721|ref|YP_002830501.1|	-	0.0034	17.4	3.4	0.039	14.0	0.3	2.5	2	1	0	2	2	2	1	FAD-NAD(P)-binding
3HCDH_N	PF02737.18	gi|227828721|ref|YP_002830501.1|	-	0.053	13.4	0.4	0.1	12.5	0.4	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ETF	PF01012.21	gi|227828722|ref|YP_002830502.1|	-	4.7e-88	293.8	0.0	3.1e-45	154.3	0.3	2.1	2	0	0	2	2	2	2	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|227828722|ref|YP_002830502.1|	-	5.8e-33	112.8	0.4	1.5e-32	111.4	0.4	1.8	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
GatB_Yqey	PF02637.18	gi|227828722|ref|YP_002830502.1|	-	0.0095	15.8	0.0	0.024	14.5	0.0	1.6	1	1	0	1	1	1	1	GatB	domain
TPP_enzyme_C	PF02775.21	gi|227828723|ref|YP_002830503.1|	-	2.6e-31	108.5	0.1	4.2e-31	107.8	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|227828723|ref|YP_002830503.1|	-	3.2e-24	84.8	0.7	8.6e-24	83.5	0.2	1.9	2	0	0	2	2	2	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Peptidase_M22	PF00814.25	gi|227828723|ref|YP_002830503.1|	-	0.14	11.8	0.1	0.67	9.6	0.1	1.9	1	1	1	2	2	2	0	Glycoprotease	family
POR_N	PF01855.19	gi|227828724|ref|YP_002830504.1|	-	2.2e-63	214.1	0.1	3.7e-63	213.4	0.1	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|227828724|ref|YP_002830504.1|	-	1.6e-31	109.7	0.7	1.8e-30	106.3	0.5	2.4	2	0	0	2	2	2	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|227828724|ref|YP_002830504.1|	-	9.4e-09	35.5	0.0	6e-08	32.9	0.0	2.5	3	0	0	3	3	3	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|227828724|ref|YP_002830504.1|	-	5.3e-07	29.6	0.0	4.8e-06	26.5	0.0	2.5	2	1	1	3	3	3	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|227828724|ref|YP_002830504.1|	-	7e-05	22.5	0.6	0.00024	20.7	0.3	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Ribosomal_S8	PF00410.19	gi|227828724|ref|YP_002830504.1|	-	0.11	12.5	0.8	0.29	11.1	0.8	1.8	1	0	0	1	1	1	0	Ribosomal	protein	S8
TFIIE_beta	PF02186.15	gi|227828724|ref|YP_002830504.1|	-	0.14	12.5	0.4	7.7	6.9	0.1	2.8	2	1	0	2	2	2	0	TFIIE	beta	subunit	core	domain
Cobl	PF09469.10	gi|227828724|ref|YP_002830504.1|	-	0.16	12.3	0.1	0.45	10.8	0.1	1.7	1	0	0	1	1	1	0	Cordon-bleu	ubiquitin-like	domain
Chlorovi_GP_rpt	PF06598.11	gi|227828724|ref|YP_002830504.1|	-	8.6	6.5	6.9	27	4.9	0.7	3.3	3	0	0	3	3	3	0	Chlorovirus	glycoprotein	repeat
Acetyltransf_1	PF00583.25	gi|227828726|ref|YP_002830506.1|	-	8.3e-14	51.8	0.0	1.1e-13	51.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|227828726|ref|YP_002830506.1|	-	1.9e-10	40.8	0.0	2.5e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|227828726|ref|YP_002830506.1|	-	5.4e-08	33.1	0.1	1.3e-07	31.9	0.1	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|227828726|ref|YP_002830506.1|	-	8.5e-07	29.7	0.0	1e-06	29.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|227828726|ref|YP_002830506.1|	-	0.00013	21.9	0.0	0.00029	20.8	0.0	1.6	1	1	1	2	2	2	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|227828726|ref|YP_002830506.1|	-	0.0045	17.1	0.1	0.0066	16.6	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|227828726|ref|YP_002830506.1|	-	0.0097	16.1	0.0	0.02	15.1	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF4821	PF16092.5	gi|227828726|ref|YP_002830506.1|	-	0.019	14.6	0.1	0.024	14.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4821)
Acetyltransf_CG	PF14542.6	gi|227828726|ref|YP_002830506.1|	-	0.035	14.2	0.0	0.067	13.3	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Myb_DNA-binding	PF00249.31	gi|227828726|ref|YP_002830506.1|	-	0.11	12.7	0.3	0.27	11.4	0.1	1.7	2	0	0	2	2	2	0	Myb-like	DNA-binding	domain
FmdA_AmdA	PF03069.15	gi|227828728|ref|YP_002830508.1|	-	2.1e-73	247.3	0.0	5.6e-45	153.8	0.0	2.0	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
AMP-binding	PF00501.28	gi|227828729|ref|YP_002830509.1|	-	1.3e-78	264.5	0.0	1.6e-78	264.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|227828729|ref|YP_002830509.1|	-	2e-18	67.2	0.0	4.4e-18	66.0	0.0	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
DUF1059	PF06348.11	gi|227828730|ref|YP_002830510.1|	-	1.7e-48	162.6	0.1	4.2e-24	84.5	0.0	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1059)
MinE	PF03776.14	gi|227828730|ref|YP_002830510.1|	-	0.029	14.4	0.0	0.5	10.4	0.0	2.3	1	1	1	2	2	2	0	Septum	formation	topological	specificity	factor	MinE
Ogr_Delta	PF04606.12	gi|227828730|ref|YP_002830510.1|	-	0.045	13.7	0.0	1.1	9.2	0.0	2.3	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Imm57	PF15596.6	gi|227828730|ref|YP_002830510.1|	-	0.098	13.0	0.0	0.18	12.2	0.0	1.5	1	0	0	1	1	1	0	Immunity	protein	57
Zn-ribbon_8	PF09723.10	gi|227828730|ref|YP_002830510.1|	-	0.26	11.5	1.6	0.71	10.0	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
PqqA	PF08042.11	gi|227828730|ref|YP_002830510.1|	-	2.2	8.5	3.4	28	4.9	0.4	2.4	2	0	0	2	2	2	0	PqqA	family
DUF1059	PF06348.11	gi|227828731|ref|YP_002830511.1|	-	2.2e-22	79.1	0.8	2.6e-22	78.8	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
HTH_24	PF13412.6	gi|227828732|ref|YP_002830512.1|	-	4e-21	74.3	4.4	1.4e-14	53.4	0.2	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|227828732|ref|YP_002830512.1|	-	2.3e-15	56.1	0.5	1e-08	34.9	0.0	2.6	3	0	0	3	3	3	2	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|227828732|ref|YP_002830512.1|	-	2e-08	34.0	0.3	6.1e-06	26.1	0.3	2.3	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|227828732|ref|YP_002830512.1|	-	8e-07	28.9	0.2	0.05	13.5	0.0	2.5	2	0	0	2	2	2	2	MarR	family
HTH_5	PF01022.20	gi|227828732|ref|YP_002830512.1|	-	5e-06	26.3	0.1	0.099	12.5	0.4	2.8	3	0	0	3	3	3	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|227828732|ref|YP_002830512.1|	-	5.5e-06	26.2	0.0	0.0037	17.1	0.0	2.2	2	0	0	2	2	2	2	MarR	family
Rrf2	PF02082.20	gi|227828732|ref|YP_002830512.1|	-	3.8e-05	24.0	0.1	0.0026	18.1	0.1	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|227828732|ref|YP_002830512.1|	-	3.9e-05	23.6	0.1	0.0033	17.4	0.0	2.3	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|227828732|ref|YP_002830512.1|	-	6.8e-05	22.8	3.2	0.011	15.7	0.2	2.9	3	0	0	3	3	3	2	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_20	PF12840.7	gi|227828732|ref|YP_002830512.1|	-	6.9e-05	22.8	0.0	0.43	10.7	0.0	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|227828732|ref|YP_002830512.1|	-	0.00017	21.7	0.0	1.1	9.5	0.0	3.0	3	0	0	3	3	3	2	Winged	helix	DNA-binding	domain
HTH_28	PF13518.6	gi|227828732|ref|YP_002830512.1|	-	0.00018	21.6	0.0	0.14	12.3	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|227828732|ref|YP_002830512.1|	-	0.0034	17.5	3.6	1	9.5	0.3	3.4	3	1	0	3	3	3	1	B-block	binding	subunit	of	TFIIIC
HTH_23	PF13384.6	gi|227828732|ref|YP_002830512.1|	-	0.0077	16.0	0.1	2.6	7.9	0.0	2.4	2	0	0	2	2	2	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|227828732|ref|YP_002830512.1|	-	0.0086	15.9	0.0	4.3	7.3	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|227828732|ref|YP_002830512.1|	-	0.0097	15.9	0.4	0.042	13.8	0.1	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_9	PF08221.11	gi|227828732|ref|YP_002830512.1|	-	0.01	15.9	0.6	0.43	10.7	0.1	2.3	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|227828732|ref|YP_002830512.1|	-	0.016	14.9	0.2	0.4	10.5	0.1	2.2	2	0	0	2	2	2	0	LexA	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|227828732|ref|YP_002830512.1|	-	0.055	13.1	0.1	4.3	7.1	0.1	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
Fe_dep_repress	PF01325.19	gi|227828732|ref|YP_002830512.1|	-	0.064	13.5	0.0	13	6.1	0.0	2.4	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_ECF	PF07638.11	gi|227828732|ref|YP_002830512.1|	-	0.11	12.4	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	ECF	sigma	factor
HTH_10	PF04967.12	gi|227828732|ref|YP_002830512.1|	-	0.14	12.0	0.1	1.3	8.9	0.0	2.2	2	0	0	2	2	2	0	HTH	DNA	binding	domain
zf-C2H2_jaz	PF12171.8	gi|227828733|ref|YP_002830513.1|	-	0.0048	17.2	1.2	0.0088	16.3	1.2	1.4	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
Fer4_10	PF13237.6	gi|227828734|ref|YP_002830514.1|	-	7.6e-07	29.2	4.7	1.3e-06	28.4	4.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828734|ref|YP_002830514.1|	-	4.2e-06	27.2	5.9	0.02	15.5	0.0	2.5	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828734|ref|YP_002830514.1|	-	0.0006	19.9	4.2	0.0006	19.9	4.2	1.7	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828734|ref|YP_002830514.1|	-	0.0028	17.6	7.5	0.17	12.0	0.2	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828734|ref|YP_002830514.1|	-	0.003	17.6	3.4	0.0067	16.5	3.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828734|ref|YP_002830514.1|	-	0.0048	17.4	2.1	0.4	11.3	0.0	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828734|ref|YP_002830514.1|	-	0.0064	17.4	5.0	0.19	12.7	0.1	2.5	1	1	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_11	PF13247.6	gi|227828734|ref|YP_002830514.1|	-	0.11	12.6	1.2	0.23	11.6	1.2	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|227828734|ref|YP_002830514.1|	-	0.15	11.8	3.6	0.11	12.3	1.5	1.8	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4	PF00037.27	gi|227828734|ref|YP_002830514.1|	-	0.67	9.9	11.2	0.25	11.2	0.5	3.0	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|227828734|ref|YP_002830514.1|	-	1.9	9.6	11.9	4.7	8.4	0.8	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|227828734|ref|YP_002830514.1|	-	3	8.6	8.5	0.84	10.3	2.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227828734|ref|YP_002830514.1|	-	9.1	6.8	14.3	2.9	8.4	0.2	3.1	3	1	0	4	4	4	0	4Fe-4S	dicluster	domain
DUF2561	PF10812.8	gi|227828735|ref|YP_002830515.1|	-	0.023	14.7	0.9	0.042	13.9	0.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2561)
DUF4330	PF14221.6	gi|227828735|ref|YP_002830515.1|	-	0.21	11.8	4.5	0.44	10.7	4.5	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4330)
Mucin	PF01456.17	gi|227828735|ref|YP_002830515.1|	-	5.7	6.9	33.8	15	5.6	33.8	1.7	1	0	0	1	1	1	0	Mucin-like	glycoprotein
DUF929	PF06053.11	gi|227828736|ref|YP_002830516.1|	-	1.5e-60	204.6	13.7	2.4e-60	203.9	13.7	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
Thioredoxin_2	PF13098.6	gi|227828736|ref|YP_002830516.1|	-	0.044	14.2	0.0	0.14	12.7	0.0	1.7	1	0	0	1	1	1	0	Thioredoxin-like	domain
Thioredoxin_7	PF13899.6	gi|227828736|ref|YP_002830516.1|	-	0.083	13.1	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	Thioredoxin-like
HMA	PF00403.26	gi|227828737|ref|YP_002830517.1|	-	4.3e-09	36.7	0.7	1.4e-08	35.0	0.7	1.9	1	1	0	1	1	1	1	Heavy-metal-associated	domain
Imm3	PF14425.6	gi|227828737|ref|YP_002830517.1|	-	0.1	12.6	0.1	0.18	11.9	0.1	1.5	1	1	0	1	1	1	0	Immunity	protein	Imm3
ABM	PF03992.16	gi|227828738|ref|YP_002830518.1|	-	1.8e-15	56.8	0.0	2.1e-15	56.6	0.0	1.1	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
SOR	PF07682.11	gi|227828738|ref|YP_002830518.1|	-	0.0097	14.8	0.0	0.16	10.8	0.0	1.9	1	1	1	2	2	2	2	Sulphur	oxygenase	reductase
DUF3291	PF11695.8	gi|227828738|ref|YP_002830518.1|	-	0.17	11.6	0.0	0.21	11.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3291)
Cytochrom_B_N_2	PF13631.6	gi|227828739|ref|YP_002830519.1|	-	5.6e-56	189.2	6.7	5.6e-56	189.2	6.7	4.0	2	2	1	3	3	3	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|227828739|ref|YP_002830519.1|	-	7.2e-23	81.4	14.2	7.2e-23	81.4	14.2	2.2	2	0	0	2	2	2	1	Cytochrome	b/b6/petB
DUF4079	PF13301.6	gi|227828739|ref|YP_002830519.1|	-	0.18	11.9	10.3	0.043	14.0	1.7	3.4	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF4079)
Rieske	PF00355.26	gi|227828740|ref|YP_002830520.1|	-	3.8e-08	33.2	0.2	2.7e-07	30.4	0.2	2.0	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
DUF2070	PF09843.9	gi|227828741|ref|YP_002830521.1|	-	0.027	12.8	1.5	0.026	12.8	1.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
S_4TM	PF18159.1	gi|227828741|ref|YP_002830521.1|	-	0.17	11.1	0.3	0.19	11.0	0.3	1.1	1	0	0	1	1	1	0	SMODS-associating	4TM	effector	domain
EB_dh	PF09459.10	gi|227828742|ref|YP_002830522.1|	-	1.7e-29	103.5	0.7	2.6e-29	102.9	0.7	1.3	1	0	0	1	1	1	1	Ethylbenzene	dehydrogenase
RIFIN	PF02009.16	gi|227828742|ref|YP_002830522.1|	-	0.06	13.2	2.7	0.082	12.8	2.7	1.2	1	0	0	1	1	1	0	Rifin
Stevor	PF17410.2	gi|227828742|ref|YP_002830522.1|	-	1.1	8.7	2.5	1.6	8.2	2.5	1.2	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
ADH_N	PF08240.12	gi|227828743|ref|YP_002830523.1|	-	8.2e-27	93.3	0.2	1.6e-26	92.3	0.2	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|227828743|ref|YP_002830523.1|	-	1.1e-23	83.6	1.1	2.8e-23	82.3	0.1	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|227828743|ref|YP_002830523.1|	-	1.6e-08	35.7	0.0	2.8e-08	34.9	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
PALP	PF00291.25	gi|227828743|ref|YP_002830523.1|	-	0.0024	17.3	0.0	0.0039	16.6	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
RmlD_sub_bind	PF04321.17	gi|227828743|ref|YP_002830523.1|	-	0.018	14.2	0.0	0.03	13.4	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Pyr_redox	PF00070.27	gi|227828743|ref|YP_002830523.1|	-	0.029	14.9	0.2	1.5	9.4	0.2	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ELFV_dehydrog	PF00208.21	gi|227828743|ref|YP_002830523.1|	-	0.12	12.1	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ADH_N_2	PF16884.5	gi|227828743|ref|YP_002830523.1|	-	0.15	12.0	0.0	0.88	9.5	0.0	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	oxidoreductase
SIS_2	PF13580.6	gi|227828743|ref|YP_002830523.1|	-	0.17	11.9	0.0	0.51	10.4	0.0	1.8	2	0	0	2	2	2	0	SIS	domain
TrmB	PF01978.19	gi|227828745|ref|YP_002830525.1|	-	5.4e-05	23.0	0.0	0.0001	22.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF4571	PF15137.6	gi|227828745|ref|YP_002830525.1|	-	0.094	12.3	0.2	0.13	11.9	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4571)
NrfD	PF03916.14	gi|227828746|ref|YP_002830526.1|	-	4.6e-11	42.9	32.4	6.7e-10	39.1	25.9	2.4	2	1	0	2	2	2	2	Polysulphide	reductase,	NrfD
TPR_19	PF14559.6	gi|227828747|ref|YP_002830527.1|	-	9e-21	74.2	4.7	1e-05	25.9	0.0	4.4	2	1	3	5	5	5	5	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|227828747|ref|YP_002830527.1|	-	2.5e-20	70.9	22.7	0.00026	20.9	0.1	8.2	8	1	1	9	9	9	4	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|227828747|ref|YP_002830527.1|	-	7.4e-17	61.7	2.1	0.00022	21.8	0.1	4.3	3	1	1	4	4	4	3	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|227828747|ref|YP_002830527.1|	-	2.5e-15	56.5	13.6	8.6e-05	22.7	0.0	4.2	2	1	2	4	4	4	4	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_11	PF13414.6	gi|227828747|ref|YP_002830527.1|	-	3.4e-14	52.3	14.3	3.6e-05	23.4	3.2	6.2	6	1	0	6	6	5	3	TPR	repeat
TPR_17	PF13431.6	gi|227828747|ref|YP_002830527.1|	-	4.5e-13	48.6	13.9	0.0044	17.3	0.1	6.8	7	0	0	7	7	7	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|227828747|ref|YP_002830527.1|	-	5.5e-11	41.8	25.5	0.0054	16.8	0.0	7.8	8	1	0	8	8	8	2	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|227828747|ref|YP_002830527.1|	-	1e-10	41.5	1.9	0.14	13.0	0.0	5.6	4	2	3	7	7	6	3	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|227828747|ref|YP_002830527.1|	-	1.1e-10	40.9	28.1	0.0021	17.8	0.1	8.3	8	1	0	8	8	8	3	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|227828747|ref|YP_002830527.1|	-	1.1e-08	35.1	0.0	0.00082	19.5	0.0	4.0	2	1	3	5	5	5	2	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|227828747|ref|YP_002830527.1|	-	6.8e-08	32.7	14.1	0.00084	19.6	0.6	5.3	3	2	2	5	5	5	3	Tetratricopeptide	repeat
ChAPs	PF09295.10	gi|227828747|ref|YP_002830527.1|	-	1.8e-07	30.5	1.3	0.0023	17.0	0.0	2.2	1	1	1	2	2	2	2	ChAPs	(Chs5p-Arf1p-binding	proteins)
NARP1	PF12569.8	gi|227828747|ref|YP_002830527.1|	-	1.6e-05	24.0	9.8	0.00066	18.7	0.4	3.6	1	1	3	4	4	4	3	NMDA	receptor-regulated	protein	1
SRP_TPR_like	PF17004.5	gi|227828747|ref|YP_002830527.1|	-	1.6e-05	24.9	14.1	0.0022	18.0	0.2	3.9	1	1	3	4	4	4	2	Putative	TPR-like	repeat
TPR_6	PF13174.6	gi|227828747|ref|YP_002830527.1|	-	4.8e-05	23.7	9.9	3.1	8.6	1.2	6.2	6	0	0	6	6	6	1	Tetratricopeptide	repeat
TPR_15	PF13429.6	gi|227828747|ref|YP_002830527.1|	-	0.00029	20.2	2.5	0.51	9.5	0.1	3.0	1	1	2	3	3	3	1	Tetratricopeptide	repeat
TPR_20	PF14561.6	gi|227828747|ref|YP_002830527.1|	-	0.00088	19.6	3.3	2.3	8.6	0.1	3.8	2	1	3	5	5	5	1	Tetratricopeptide	repeat
BTAD	PF03704.17	gi|227828747|ref|YP_002830527.1|	-	0.0018	18.7	3.5	2.2	8.7	0.0	3.8	3	2	2	5	5	4	1	Bacterial	transcriptional	activator	domain
Coatomer_E	PF04733.14	gi|227828747|ref|YP_002830527.1|	-	0.0042	16.5	5.9	0.099	12.0	1.7	3.4	1	1	1	2	2	2	1	Coatomer	epsilon	subunit
HrpB1_HrpK	PF09613.10	gi|227828747|ref|YP_002830527.1|	-	0.0069	16.0	0.1	0.044	13.4	0.0	2.3	3	0	0	3	3	3	1	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
TPR_MalT	PF17874.1	gi|227828747|ref|YP_002830527.1|	-	0.042	13.2	0.4	1.8	7.9	0.1	3.1	2	1	0	2	2	2	0	MalT-like	TPR	region
TPR_7	PF13176.6	gi|227828747|ref|YP_002830527.1|	-	0.055	13.5	7.2	78	3.7	0.0	5.6	6	0	0	6	6	6	0	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.6	gi|227828747|ref|YP_002830527.1|	-	0.077	13.1	14.1	0.45	10.6	3.3	4.2	3	1	2	5	5	4	0	Fis1	C-terminal	tetratricopeptide	repeat
DUF3856	PF12968.7	gi|227828747|ref|YP_002830527.1|	-	0.39	10.8	3.8	2.5	8.2	0.1	3.6	3	2	1	4	4	4	0	Domain	of	Unknown	Function	(DUF3856)
MIT	PF04212.18	gi|227828747|ref|YP_002830527.1|	-	0.43	10.7	13.0	0.9	9.7	0.5	5.0	3	2	2	5	5	5	0	MIT	(microtubule	interacting	and	transport)	domain
Molybdopterin	PF00384.22	gi|227828748|ref|YP_002830528.1|	-	4.7e-06	25.8	0.0	0.17	10.8	0.0	3.6	4	0	0	4	4	4	2	Molybdopterin	oxidoreductase
TAT_signal	PF10518.9	gi|227828748|ref|YP_002830528.1|	-	1e-05	25.2	0.4	2.4e-05	24.0	0.4	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Molydop_binding	PF01568.21	gi|227828748|ref|YP_002830528.1|	-	0.017	15.1	0.0	0.047	13.7	0.0	1.7	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|227828748|ref|YP_002830528.1|	-	0.091	12.8	0.2	0.21	11.6	0.2	1.6	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_11	PF13247.6	gi|227828749|ref|YP_002830529.1|	-	1e-18	67.3	7.3	1e-18	67.3	7.3	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828749|ref|YP_002830529.1|	-	7.2e-12	45.7	11.8	1.8e-05	25.3	4.0	3.0	2	2	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828749|ref|YP_002830529.1|	-	3.1e-08	33.6	16.3	1.5e-05	25.0	5.7	3.3	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828749|ref|YP_002830529.1|	-	3.6e-08	33.5	11.7	0.00026	21.1	4.6	3.0	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227828749|ref|YP_002830529.1|	-	6.3e-06	26.5	11.0	1.3e-05	25.5	0.8	3.1	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828749|ref|YP_002830529.1|	-	0.0013	18.4	24.4	0.044	13.6	0.8	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|227828749|ref|YP_002830529.1|	-	0.0044	17.4	30.8	0.02	15.4	1.3	4.7	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227828749|ref|YP_002830529.1|	-	0.0092	16.0	24.6	0.14	12.3	0.9	4.6	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|227828749|ref|YP_002830529.1|	-	0.02	15.4	16.7	0.13	12.8	0.2	3.8	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227828749|ref|YP_002830529.1|	-	0.24	11.5	23.1	0.27	11.4	1.1	3.6	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|227828749|ref|YP_002830529.1|	-	0.72	10.9	32.7	0.23	12.5	6.4	4.4	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|227828749|ref|YP_002830529.1|	-	6.5	7.7	14.3	0.88	10.5	0.3	3.3	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828749|ref|YP_002830529.1|	-	6.8	7.7	21.6	1.3	10.0	0.2	3.8	2	1	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Nitrate_red_del	PF02613.15	gi|227828750|ref|YP_002830530.1|	-	2.8e-18	66.2	0.0	4.3e-18	65.6	0.0	1.3	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Fer4_7	PF12838.7	gi|227828751|ref|YP_002830531.1|	-	5.1e-08	33.4	12.6	0.0037	17.8	0.9	3.6	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828751|ref|YP_002830531.1|	-	4.3e-06	26.8	16.9	0.017	15.3	0.2	3.8	4	0	0	4	4	4	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828751|ref|YP_002830531.1|	-	6.1e-05	22.7	3.9	6.1e-05	22.7	3.9	5.0	6	0	0	6	6	6	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|227828751|ref|YP_002830531.1|	-	0.00014	22.3	10.9	0.38	11.3	0.2	4.2	4	1	1	5	5	5	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828751|ref|YP_002830531.1|	-	0.00016	21.6	4.7	0.00016	21.6	4.7	4.0	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828751|ref|YP_002830531.1|	-	0.00031	20.8	6.2	0.00031	20.8	6.2	2.9	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828751|ref|YP_002830531.1|	-	0.00041	20.3	21.9	0.0024	17.9	3.3	4.8	4	0	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|227828751|ref|YP_002830531.1|	-	0.0019	18.3	26.2	0.0075	16.4	2.2	3.9	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227828751|ref|YP_002830531.1|	-	0.016	15.9	13.0	3.3	8.5	6.4	4.2	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|227828751|ref|YP_002830531.1|	-	0.16	12.5	17.5	0.53	10.8	1.6	3.5	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_19	PF06902.11	gi|227828751|ref|YP_002830531.1|	-	0.25	11.4	4.8	12	6.1	0.1	3.3	3	0	0	3	3	3	0	Divergent	4Fe-4S	mono-cluster
Fer4_22	PF17179.4	gi|227828751|ref|YP_002830531.1|	-	0.32	11.9	8.5	4.1	8.3	0.1	3.4	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
HAD_2	PF13419.6	gi|227828752|ref|YP_002830532.1|	-	0.0017	18.5	0.0	0.0021	18.1	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
DUF2299	PF10061.9	gi|227828753|ref|YP_002830533.1|	-	4.6e-36	123.6	0.1	5.2e-36	123.4	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
DDE_Tnp_2	PF04693.12	gi|227828754|ref|YP_002830534.1|	-	2.4e-157	523.3	1.9	2.8e-157	523.1	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|227828754|ref|YP_002830534.1|	-	4.3e-05	23.2	0.1	0.00011	22.0	0.1	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_5	PF13546.6	gi|227828754|ref|YP_002830534.1|	-	0.0017	17.8	0.0	0.011	15.1	0.0	2.0	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
FliMN_C	PF01052.20	gi|227828755|ref|YP_002830535.1|	-	0.11	12.4	0.1	0.17	11.9	0.1	1.3	1	0	0	1	1	1	0	Type	III	flagellar	switch	regulator	(C-ring)	FliN	C-term
HTH_23	PF13384.6	gi|227828756|ref|YP_002830536.1|	-	5.4e-09	35.6	0.1	8.4e-09	35.0	0.1	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
Zn_Tnp_IS1	PF03811.13	gi|227828756|ref|YP_002830536.1|	-	7.8e-06	25.5	9.0	1.4e-05	24.7	9.0	1.4	1	0	0	1	1	1	1	InsA	N-terminal	domain
HTH_28	PF13518.6	gi|227828756|ref|YP_002830536.1|	-	0.00025	21.1	0.1	0.00043	20.4	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|227828756|ref|YP_002830536.1|	-	0.00065	19.5	0.1	0.001	18.9	0.1	1.3	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_29	PF13551.6	gi|227828756|ref|YP_002830536.1|	-	0.0014	18.6	0.0	0.0022	18.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_38	PF13936.6	gi|227828756|ref|YP_002830536.1|	-	0.0042	16.8	0.0	0.008	15.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-ribbon_3	PF13248.6	gi|227828756|ref|YP_002830536.1|	-	0.0046	16.3	2.5	0.33	10.4	0.2	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Sigma70_r4_2	PF08281.12	gi|227828756|ref|YP_002830536.1|	-	0.014	15.1	0.0	0.024	14.3	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
Zn_Tnp_IS1595	PF12760.7	gi|227828756|ref|YP_002830536.1|	-	0.014	15.3	5.8	0.022	14.7	5.8	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
HTH_Tnp_IS630	PF01710.16	gi|227828756|ref|YP_002830536.1|	-	0.021	14.9	0.1	0.025	14.6	0.1	1.2	1	0	0	1	1	1	0	Transposase
Zn-ribbon_8	PF09723.10	gi|227828756|ref|YP_002830536.1|	-	0.065	13.4	5.0	1.3	9.2	0.9	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
HTH_Tnp_1	PF01527.20	gi|227828756|ref|YP_002830536.1|	-	0.07	13.4	0.0	0.11	12.9	0.0	1.3	1	0	0	1	1	1	0	Transposase
HTH_24	PF13412.6	gi|227828756|ref|YP_002830536.1|	-	0.083	12.5	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Phage_terminase	PF10668.9	gi|227828756|ref|YP_002830536.1|	-	0.12	12.4	0.0	0.24	11.5	0.0	1.6	1	1	0	1	1	1	0	Phage	terminase	small	subunit
Nudix_N_2	PF14803.6	gi|227828756|ref|YP_002830536.1|	-	0.46	10.5	6.0	1.1	9.2	6.0	1.7	1	1	0	1	1	1	0	Nudix	N-terminal
DZR	PF12773.7	gi|227828756|ref|YP_002830536.1|	-	0.52	10.4	3.8	3.9	7.6	0.3	2.1	1	1	1	2	2	2	0	Double	zinc	ribbon
Zn_Tnp_IS91	PF14319.6	gi|227828756|ref|YP_002830536.1|	-	1.2	9.2	4.0	1.4	9.0	0.4	2.2	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|227828756|ref|YP_002830536.1|	-	2	8.0	4.3	10	5.8	4.5	2.0	1	1	1	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|227828756|ref|YP_002830536.1|	-	2.6	7.9	5.6	10	6.0	0.2	2.8	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|227828756|ref|YP_002830536.1|	-	3.1	8.5	10.9	12	6.6	1.1	2.8	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Glycos_transf_1	PF00534.20	gi|227828758|ref|YP_002830538.1|	-	2.8e-23	82.3	1.3	4.6e-23	81.6	1.3	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227828758|ref|YP_002830538.1|	-	9.4e-18	64.9	0.0	1.7e-17	64.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227828758|ref|YP_002830538.1|	-	0.0013	19.1	0.0	0.0027	18.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF2340	PF10209.9	gi|227828758|ref|YP_002830538.1|	-	0.012	16.0	1.4	0.04	14.4	0.3	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2340)
Transposase_mut	PF00872.18	gi|227828759|ref|YP_002830539.1|	-	1.9e-56	191.6	1.2	5.3e-56	190.1	1.2	1.6	1	1	0	1	1	1	1	Transposase,	Mutator	family
MULE	PF10551.9	gi|227828759|ref|YP_002830539.1|	-	2.7e-08	34.1	0.0	1.1e-07	32.1	0.0	2.0	2	0	0	2	2	2	1	MULE	transposase	domain
DDE_Tnp_IS240	PF13610.6	gi|227828759|ref|YP_002830539.1|	-	0.0034	17.6	0.0	0.012	15.8	0.0	2.0	1	1	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.14	gi|227828759|ref|YP_002830539.1|	-	0.0065	16.0	0.0	0.039	13.4	0.0	2.1	2	0	0	2	2	2	1	Transposase	IS66	family
ATP-cone	PF03477.16	gi|227828759|ref|YP_002830539.1|	-	0.0095	16.5	2.1	0.021	15.4	0.9	2.2	3	0	0	3	3	3	1	ATP	cone	domain
Phage_sheath_1C	PF17482.2	gi|227828759|ref|YP_002830539.1|	-	0.15	12.0	0.4	1.1	9.3	0.1	2.4	3	0	0	3	3	3	0	Phage	tail	sheath	C-terminal	domain
GATase_4	PF13230.6	gi|227828760|ref|YP_002830540.1|	-	0.00012	21.1	0.0	0.00015	20.7	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.6	gi|227828760|ref|YP_002830540.1|	-	0.042	14.1	0.0	0.056	13.6	0.0	1.2	1	0	0	1	1	1	0	Glutamine	amidotransferase	domain
SSV1_ORF_D-335	PF07935.11	gi|227828761|ref|YP_002830541.1|	-	6.5e-26	90.4	1.5	7.2e-26	90.3	1.5	1.0	1	0	0	1	1	1	1	ORF	D-335-like	protein
DUF4909	PF16253.5	gi|227828761|ref|YP_002830541.1|	-	0.026	14.3	0.0	0.032	14.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4909)
RalF_SCD	PF18248.1	gi|227828763|ref|YP_002830543.1|	-	0.011	15.7	0.3	0.019	15.0	0.3	1.3	1	0	0	1	1	1	0	RalF	C-terminal	Sec-7	capping	domain
AAA_14	PF13173.6	gi|227828765|ref|YP_002830545.1|	-	8.1e-31	106.8	0.3	7.1e-30	103.7	0.1	2.4	2	0	0	2	2	2	1	AAA	domain
DUF4143	PF13635.6	gi|227828765|ref|YP_002830545.1|	-	1e-13	51.5	2.8	2.1e-13	50.5	0.4	2.4	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4143)
AAA_22	PF13401.6	gi|227828765|ref|YP_002830545.1|	-	0.016	15.5	0.0	1.8	8.8	0.0	2.7	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|227828765|ref|YP_002830545.1|	-	0.018	15.4	0.0	0.49	10.7	0.0	2.6	1	1	0	2	2	2	0	AAA	ATPase	domain
MS_channel	PF00924.18	gi|227828766|ref|YP_002830546.1|	-	1.1e-17	64.3	7.8	1.1e-17	64.3	7.8	1.9	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Peptidase_U4	PF03419.13	gi|227828766|ref|YP_002830546.1|	-	0.29	10.4	10.5	0.31	10.3	10.0	1.3	1	1	0	1	1	1	0	Sporulation	factor	SpoIIGA
SNARE_assoc	PF09335.11	gi|227828767|ref|YP_002830547.1|	-	1.2e-20	74.2	6.4	1.2e-20	74.2	6.4	1.9	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
Transketolase_C	PF02780.20	gi|227828768|ref|YP_002830548.1|	-	1.6e-36	124.9	0.0	2.1e-36	124.5	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Transket_pyr	PF02779.24	gi|227828768|ref|YP_002830548.1|	-	2e-20	73.2	0.0	3.6e-20	72.4	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
PFOR_II	PF17147.4	gi|227828768|ref|YP_002830548.1|	-	0.0004	20.7	0.1	0.0008	19.7	0.0	1.5	2	0	0	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
DUF4322	PF14210.6	gi|227828769|ref|YP_002830549.1|	-	5.2e-26	90.3	0.1	1.7e-25	88.7	0.1	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|227828769|ref|YP_002830549.1|	-	1.4e-09	38.0	0.3	2.9e-09	36.9	0.3	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
HTH_23	PF13384.6	gi|227828769|ref|YP_002830549.1|	-	0.086	12.7	0.0	0.33	10.8	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
Transgly	PF00912.22	gi|227828769|ref|YP_002830549.1|	-	1.4	8.4	4.0	15	5.0	0.2	2.4	2	1	0	2	2	2	0	Transglycosylase
Transket_pyr	PF02779.24	gi|227828770|ref|YP_002830550.1|	-	2e-12	47.1	0.0	2.3e-12	46.9	0.0	1.1	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Aldo_ket_red	PF00248.21	gi|227828771|ref|YP_002830551.1|	-	3e-63	213.8	0.0	2.5e-61	207.5	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Usp	PF00582.26	gi|227828772|ref|YP_002830552.1|	-	1.7e-38	132.3	0.1	1.8e-38	132.2	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
EF_assoc_2	PF08356.12	gi|227828772|ref|YP_002830552.1|	-	0.12	12.4	0.1	0.2	11.6	0.1	1.3	1	0	0	1	1	1	0	EF	hand	associated
FIBP	PF05427.11	gi|227828773|ref|YP_002830553.1|	-	0.0043	16.4	0.1	0.0046	16.3	0.1	1.0	1	0	0	1	1	1	1	Acidic	fibroblast	growth	factor	binding	(FIBP)
PCRF	PF03462.18	gi|227828773|ref|YP_002830553.1|	-	0.012	15.5	0.1	0.014	15.3	0.1	1.1	1	0	0	1	1	1	0	PCRF	domain
DAO	PF01266.24	gi|227828774|ref|YP_002830554.1|	-	5.5e-16	59.1	0.0	2.5e-07	30.6	0.1	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|227828774|ref|YP_002830554.1|	-	3.9e-12	46.3	0.0	5.2e-12	45.9	0.0	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|227828774|ref|YP_002830554.1|	-	9.2e-11	41.4	0.2	1.4e-10	40.9	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|227828774|ref|YP_002830554.1|	-	1.2e-09	37.8	0.5	1.6e-05	24.3	0.2	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|227828774|ref|YP_002830554.1|	-	2.3e-08	33.5	0.0	3.3e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|227828774|ref|YP_002830554.1|	-	3e-08	32.8	0.4	4.3e-07	29.0	0.4	2.2	1	1	0	1	1	1	1	HI0933-like	protein
Trp_halogenase	PF04820.14	gi|227828774|ref|YP_002830554.1|	-	8.9e-08	31.4	0.8	0.0003	19.8	0.0	3.0	2	1	1	3	3	3	2	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|227828774|ref|YP_002830554.1|	-	1.1e-07	31.4	1.9	0.00035	19.9	0.3	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|227828774|ref|YP_002830554.1|	-	1.5e-06	27.6	0.3	8.6e-06	25.2	0.3	2.0	1	1	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.19	gi|227828774|ref|YP_002830554.1|	-	7.2e-06	25.5	0.1	1.2e-05	24.8	0.0	1.4	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|227828774|ref|YP_002830554.1|	-	2.3e-05	24.5	0.3	8.1e-05	22.8	0.3	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|227828774|ref|YP_002830554.1|	-	9.1e-05	21.7	0.4	0.00016	20.9	0.4	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.21	gi|227828774|ref|YP_002830554.1|	-	0.0031	16.8	1.7	0.0096	15.2	0.8	2.0	2	1	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|227828774|ref|YP_002830554.1|	-	0.0042	17.6	3.5	0.024	15.2	0.5	3.0	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_7	PF12838.7	gi|227828775|ref|YP_002830555.1|	-	3.4e-09	37.1	2.3	0.0007	20.1	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828775|ref|YP_002830555.1|	-	1.8e-07	31.2	7.4	2.5e-07	30.7	7.4	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828775|ref|YP_002830555.1|	-	2.8e-07	30.6	5.2	4e-07	30.1	5.2	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|227828775|ref|YP_002830555.1|	-	2.4e-06	27.6	2.4	4.3e-06	26.8	2.4	1.4	1	1	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_21	PF14697.6	gi|227828775|ref|YP_002830555.1|	-	4e-06	26.9	2.8	0.023	14.8	0.9	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828775|ref|YP_002830555.1|	-	5.7e-06	26.1	13.1	4.9e-05	23.2	3.5	2.6	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_11	PF13247.6	gi|227828775|ref|YP_002830555.1|	-	6.9e-06	26.1	1.7	7.8e-06	25.9	1.7	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828775|ref|YP_002830555.1|	-	8.4e-06	25.6	10.9	0.001	19.0	2.4	2.6	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|227828775|ref|YP_002830555.1|	-	0.00013	22.3	2.7	0.18	12.3	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828775|ref|YP_002830555.1|	-	0.00013	22.8	3.2	0.2	12.6	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_20	PF14691.6	gi|227828775|ref|YP_002830555.1|	-	0.0031	17.3	8.0	0.012	15.4	2.1	2.1	1	1	1	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.7	gi|227828775|ref|YP_002830555.1|	-	0.0078	17.1	13.8	0.099	13.6	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|227828775|ref|YP_002830555.1|	-	0.0088	15.8	14.9	0.036	13.9	2.0	3.9	3	1	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227828775|ref|YP_002830555.1|	-	0.046	13.9	2.0	0.083	13.1	2.0	1.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227828775|ref|YP_002830555.1|	-	0.082	13.5	10.1	2.1	9.0	2.1	2.5	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|227828775|ref|YP_002830555.1|	-	0.14	12.7	6.8	3.3	8.3	0.3	2.1	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Glycos_transf_1	PF00534.20	gi|227828776|ref|YP_002830556.1|	-	1.8e-31	109.0	1.3	2.1e-31	108.8	0.3	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227828776|ref|YP_002830556.1|	-	2.2e-23	83.2	0.0	5.5e-23	81.9	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|227828776|ref|YP_002830556.1|	-	2.2e-19	70.1	1.3	4.7e-19	69.0	1.3	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|227828776|ref|YP_002830556.1|	-	2.3e-09	37.5	0.0	8.2e-09	35.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|227828776|ref|YP_002830556.1|	-	8.4e-06	26.3	0.0	4.8e-05	23.8	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
TPP_enzyme_N	PF02776.18	gi|227828777|ref|YP_002830557.1|	-	5.3e-47	159.6	0.0	7.6e-46	155.9	0.0	2.3	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|227828777|ref|YP_002830557.1|	-	5.2e-33	114.0	0.0	2.8e-32	111.6	0.1	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|227828777|ref|YP_002830557.1|	-	1.2e-20	73.7	0.0	2.9e-20	72.4	0.0	1.7	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
FAA_hydrolase	PF01557.18	gi|227828778|ref|YP_002830558.1|	-	2.2e-71	240.0	0.0	2.7e-71	239.7	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
OFeT_1	PF16955.5	gi|227828779|ref|YP_002830559.1|	-	1.2e-106	355.0	18.3	1.4e-106	354.9	18.3	1.0	1	0	0	1	1	1	1	Ferrous	iron	uptake	permease,	iron-lead	transporter
TerC	PF03741.16	gi|227828779|ref|YP_002830559.1|	-	0.092	12.4	8.9	0.21	11.3	8.5	1.8	1	1	0	1	1	1	0	Integral	membrane	protein	TerC	family
UPF0016	PF01169.19	gi|227828779|ref|YP_002830559.1|	-	0.93	9.9	16.6	2.3	8.6	3.6	2.4	2	1	0	2	2	2	0	Uncharacterized	protein	family	UPF0016
MASE5	PF17178.4	gi|227828779|ref|YP_002830559.1|	-	2.2	8.1	13.5	0.12	12.2	3.0	2.2	2	0	0	2	2	2	0	Membrane-associated	sensor
Amidohydro_3	PF07969.11	gi|227828780|ref|YP_002830560.1|	-	1.6e-27	97.1	0.0	5.9e-23	82.1	0.0	2.5	1	1	0	2	2	2	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|227828780|ref|YP_002830560.1|	-	1.7e-11	44.0	0.0	4.4e-11	42.7	0.0	1.6	1	1	0	1	1	1	1	Amidohydrolase	family
MS_channel	PF00924.18	gi|227828781|ref|YP_002830561.1|	-	1.9e-28	99.4	1.3	3.8e-28	98.5	1.3	1.5	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
FokI_C	PF02980.16	gi|227828781|ref|YP_002830561.1|	-	0.036	14.1	0.1	0.059	13.4	0.1	1.3	1	0	0	1	1	1	0	Restriction	endonuclease	FokI,	catalytic	domain
RseC_MucC	PF04246.12	gi|227828782|ref|YP_002830562.1|	-	1.5	8.8	3.7	2.9	7.9	3.7	1.5	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
FAM184	PF15665.5	gi|227828783|ref|YP_002830563.1|	-	0.0017	18.2	10.7	0.017	14.9	2.8	2.2	2	0	0	2	2	2	2	Family	with	sequence	similarity	184,	A	and	B
FCH	PF00611.23	gi|227828783|ref|YP_002830563.1|	-	0.0027	17.9	0.4	0.019	15.2	0.4	2.4	2	0	0	2	2	1	1	Fes/CIP4,	and	EFC/F-BAR	homology	domain
LPD39	PF18858.1	gi|227828783|ref|YP_002830563.1|	-	0.003	17.7	5.0	0.082	13.0	1.3	2.6	2	1	1	3	3	3	1	Large	polyvalent	protein	associated	domain	39
Spectrin	PF00435.21	gi|227828783|ref|YP_002830563.1|	-	0.0041	17.6	6.4	0.2	12.2	0.5	2.6	2	0	0	2	2	2	2	Spectrin	repeat
DCB	PF16213.5	gi|227828783|ref|YP_002830563.1|	-	0.0076	15.9	3.6	0.0095	15.6	0.1	2.7	2	1	0	2	2	2	1	Dimerisation	and	cyclophilin-binding	domain	of	Mon2
DUF1664	PF07889.12	gi|227828783|ref|YP_002830563.1|	-	0.0078	16.2	9.7	0.62	10.1	2.5	2.9	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1664)
DUF2203	PF09969.9	gi|227828783|ref|YP_002830563.1|	-	0.012	16.3	8.4	0.21	12.3	0.5	2.9	2	1	0	3	3	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4407	PF14362.6	gi|227828783|ref|YP_002830563.1|	-	0.019	14.3	3.8	0.03	13.7	3.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Baculo_PEP_C	PF04513.12	gi|227828783|ref|YP_002830563.1|	-	0.022	14.8	1.4	0.022	14.8	1.4	3.4	3	1	1	4	4	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF883	PF05957.13	gi|227828783|ref|YP_002830563.1|	-	0.042	14.4	4.3	0.72	10.5	0.2	3.2	2	2	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
CENP-F_leu_zip	PF10473.9	gi|227828783|ref|YP_002830563.1|	-	0.05	13.6	14.3	0.057	13.4	3.0	2.5	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Cep57_MT_bd	PF06657.13	gi|227828783|ref|YP_002830563.1|	-	0.061	13.8	8.4	0.11	13.0	0.9	3.1	2	1	1	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
Fzo_mitofusin	PF04799.13	gi|227828783|ref|YP_002830563.1|	-	0.064	12.8	8.7	0.06	12.9	1.1	2.8	2	1	0	2	2	2	0	fzo-like	conserved	region
YlqD	PF11068.8	gi|227828783|ref|YP_002830563.1|	-	0.069	13.5	6.0	0.24	11.8	0.8	2.7	2	0	0	2	2	2	0	YlqD	protein
Syntaxin-6_N	PF09177.11	gi|227828783|ref|YP_002830563.1|	-	0.08	13.5	15.6	0.24	12.0	4.0	3.9	2	1	1	3	3	2	0	Syntaxin	6,	N-terminal
DUF948	PF06103.11	gi|227828783|ref|YP_002830563.1|	-	0.082	13.2	9.2	0.24	11.7	0.1	4.2	4	1	0	4	4	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Aminopep	PF10023.9	gi|227828783|ref|YP_002830563.1|	-	0.082	12.3	2.2	0.44	9.9	0.2	2.2	2	0	0	2	2	2	0	Putative	aminopeptidase
Goodbye	PF17109.5	gi|227828783|ref|YP_002830563.1|	-	0.1	13.0	6.1	0.79	10.2	0.5	3.1	2	2	1	3	3	3	0	fungal	STAND	N-terminal	Goodbye	domain
COMM_domain	PF07258.14	gi|227828783|ref|YP_002830563.1|	-	0.15	12.2	1.8	0.63	10.2	0.0	3.0	3	0	0	3	3	2	0	COMM	domain
MCR_C	PF04609.12	gi|227828783|ref|YP_002830563.1|	-	0.17	10.9	2.7	0.15	11.1	0.5	2.0	2	0	0	2	2	2	0	Methyl-coenzyme	M	reductase	operon	protein	C
DUF2935	PF11155.8	gi|227828783|ref|YP_002830563.1|	-	0.26	11.6	9.8	0.57	10.5	0.2	3.7	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF2935)
Cytochrom_B562	PF07361.11	gi|227828783|ref|YP_002830563.1|	-	0.26	12.0	7.8	1.4	9.6	0.3	3.7	2	1	2	4	4	3	0	Cytochrome	b562
APG6_N	PF17675.1	gi|227828783|ref|YP_002830563.1|	-	0.3	11.6	14.2	2.6	8.6	5.8	3.0	2	1	0	2	2	2	0	Apg6	coiled-coil	region
Prominin	PF05478.11	gi|227828783|ref|YP_002830563.1|	-	0.78	7.6	29.1	0.012	13.6	3.3	2.4	3	0	0	3	3	3	0	Prominin
Cor1	PF04803.12	gi|227828783|ref|YP_002830563.1|	-	0.79	9.9	15.3	2.9	8.1	3.7	3.3	3	0	0	3	3	3	0	Cor1/Xlr/Xmr	conserved	region
Exonuc_VII_L	PF02601.15	gi|227828783|ref|YP_002830563.1|	-	0.86	9.1	9.8	3.9	6.9	9.8	2.0	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Phe_tRNA-synt_N	PF02912.18	gi|227828783|ref|YP_002830563.1|	-	2.1	8.3	10.6	13	5.8	0.6	3.6	2	1	1	3	3	3	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
HIP1_clath_bdg	PF16515.5	gi|227828783|ref|YP_002830563.1|	-	2.6	8.7	8.3	4	8.1	1.3	3.0	2	1	0	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
Phasin	PF05597.11	gi|227828783|ref|YP_002830563.1|	-	3.1	7.8	8.1	2.2	8.3	1.5	3.3	2	1	2	4	4	4	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF1640	PF07798.11	gi|227828783|ref|YP_002830563.1|	-	3.6	7.6	21.0	0.31	11.1	4.8	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1640)
DUF5595	PF18077.1	gi|227828783|ref|YP_002830563.1|	-	3.9	7.6	14.8	0.079	13.0	1.3	3.9	2	2	0	3	3	3	0	Domain	of	unknown	function	(DUF5595)
DUF4735	PF15882.5	gi|227828783|ref|YP_002830563.1|	-	4.2	6.7	5.3	2.9	7.3	1.9	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4735)
TMPIT	PF07851.13	gi|227828783|ref|YP_002830563.1|	-	4.9	6.3	13.6	0.33	10.1	2.3	2.2	1	1	1	2	2	2	0	TMPIT-like	protein
ACCA	PF03255.14	gi|227828783|ref|YP_002830563.1|	-	5.9	6.8	9.5	11	5.8	0.7	3.0	2	1	1	3	3	3	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
CpxA_peri	PF16527.5	gi|227828783|ref|YP_002830563.1|	-	6	7.3	10.0	0.4	11.0	1.6	2.6	1	1	1	2	2	2	0	Two-component	sensor	protein	CpxA,	periplasmic	domain
Tup_N	PF08581.10	gi|227828783|ref|YP_002830563.1|	-	7.1	7.0	16.9	1.8	8.9	4.8	4.2	2	2	0	2	2	2	0	Tup	N-terminal
60KD_IMP	PF02096.20	gi|227828783|ref|YP_002830563.1|	-	7.3	6.5	5.8	4.1	7.3	2.2	2.1	2	0	0	2	2	2	0	60Kd	inner	membrane	protein
Pyr_redox_2	PF07992.14	gi|227828784|ref|YP_002830564.1|	-	1.4e-39	136.1	2.4	1.6e-39	135.9	2.4	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|227828784|ref|YP_002830564.1|	-	1.2e-19	70.7	1.4	1e-15	57.8	0.4	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227828784|ref|YP_002830564.1|	-	1.5e-08	35.1	3.1	0.00011	22.6	0.0	3.0	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|227828784|ref|YP_002830564.1|	-	2.8e-08	33.7	0.6	0.0004	20.1	0.2	2.4	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|227828784|ref|YP_002830564.1|	-	2.1e-06	27.1	0.8	3.3e-05	23.2	0.2	2.4	2	1	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|227828784|ref|YP_002830564.1|	-	8.4e-06	25.2	0.3	0.0075	15.5	0.0	2.4	2	0	0	2	2	2	2	Thi4	family
NAD_binding_8	PF13450.6	gi|227828784|ref|YP_002830564.1|	-	4.5e-05	23.6	0.4	0.0001	22.5	0.3	1.6	1	1	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|227828784|ref|YP_002830564.1|	-	0.0001	21.5	7.1	0.00082	18.6	0.1	3.2	2	2	1	3	3	3	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|227828784|ref|YP_002830564.1|	-	0.0002	20.2	0.5	0.093	11.4	0.0	2.9	3	0	0	3	3	3	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|227828784|ref|YP_002830564.1|	-	0.0013	18.1	0.5	0.0028	17.1	0.1	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|227828784|ref|YP_002830564.1|	-	0.065	12.3	0.5	0.33	9.9	0.1	2.2	3	0	0	3	3	3	0	Lycopene	cyclase	protein
RTX_C	PF08339.10	gi|227828784|ref|YP_002830564.1|	-	0.07	13.2	2.4	0.18	11.9	0.6	2.1	2	0	0	2	2	2	0	RTX	C-terminal	domain
K_oxygenase	PF13434.6	gi|227828784|ref|YP_002830564.1|	-	0.094	11.8	0.0	16	4.5	0.0	2.8	2	1	0	3	3	3	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Fer4_10	PF13237.6	gi|227828785|ref|YP_002830565.1|	-	1e-05	25.5	4.5	1e-05	25.5	4.5	1.6	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828785|ref|YP_002830565.1|	-	0.00019	21.1	12.0	0.00042	20.0	0.8	3.0	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|227828785|ref|YP_002830565.1|	-	0.00081	19.4	9.2	0.017	15.1	0.4	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227828785|ref|YP_002830565.1|	-	0.001	19.6	11.4	0.004	17.7	9.3	2.5	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828785|ref|YP_002830565.1|	-	0.0017	18.5	4.1	0.0017	18.5	4.1	1.7	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828785|ref|YP_002830565.1|	-	0.036	14.6	4.0	0.34	11.5	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828785|ref|YP_002830565.1|	-	0.083	13.0	13.5	0.19	11.9	0.2	2.7	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Phage_holin_3_5	PF16085.5	gi|227828785|ref|YP_002830565.1|	-	0.26	11.4	2.0	1	9.5	0.3	2.8	2	0	0	2	2	2	0	Bacteriophage	holin	Hol,	superfamily	III
Fer4_16	PF13484.6	gi|227828785|ref|YP_002830565.1|	-	0.53	11.3	7.3	7.9	7.5	0.3	2.3	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|227828785|ref|YP_002830565.1|	-	0.53	10.8	6.8	4.8	7.7	0.0	3.0	4	0	0	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|227828785|ref|YP_002830565.1|	-	0.54	10.5	2.5	1.1	9.5	2.5	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|227828785|ref|YP_002830565.1|	-	2.6	7.9	5.0	1.7	8.5	1.6	2.1	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_4	PF12800.7	gi|227828785|ref|YP_002830565.1|	-	8.8	7.1	9.6	4.6	8.0	0.6	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
ETF	PF01012.21	gi|227828786|ref|YP_002830566.1|	-	6.2e-36	124.0	0.1	7.9e-36	123.6	0.1	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
SUB1_ProdP9	PF18213.1	gi|227828786|ref|YP_002830566.1|	-	0.048	13.5	1.6	0.69	9.8	0.0	2.9	2	1	1	3	3	3	0	SUB1	protease	Prodomain	ProdP9
ETF_alpha	PF00766.19	gi|227828787|ref|YP_002830567.1|	-	1.2e-31	108.5	0.8	2.5e-31	107.6	0.4	1.8	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|227828787|ref|YP_002830567.1|	-	1e-16	61.3	0.1	2e-16	60.4	0.1	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
Acyl-CoA_dh_1	PF00441.24	gi|227828788|ref|YP_002830568.1|	-	1.2e-38	132.7	0.6	1.9e-38	132.0	0.6	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|227828788|ref|YP_002830568.1|	-	6.3e-24	84.8	0.0	1.4e-23	83.7	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|227828788|ref|YP_002830568.1|	-	4.8e-22	78.0	0.0	1e-21	76.9	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|227828788|ref|YP_002830568.1|	-	2e-17	63.7	0.0	3.4e-17	63.0	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Ald_Xan_dh_C2	PF02738.18	gi|227828789|ref|YP_002830569.1|	-	6.2e-133	444.1	0.0	7.4e-133	443.9	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227828789|ref|YP_002830569.1|	-	8.8e-15	55.0	0.0	1.8e-14	54.0	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF167	PF02594.16	gi|227828789|ref|YP_002830569.1|	-	0.023	14.8	2.5	1.2	9.3	0.1	3.5	4	0	0	4	4	4	0	Uncharacterised	ACR,	YggU	family	COG1872
RepB-RCR_reg	PF10723.9	gi|227828790|ref|YP_002830570.1|	-	0.046	13.7	0.4	0.21	11.6	0.1	1.9	2	0	0	2	2	2	0	Replication	regulatory	protein	RepB
Fer4_11	PF13247.6	gi|227828791|ref|YP_002830571.1|	-	2.1e-20	72.7	9.1	2.1e-20	72.7	9.1	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828791|ref|YP_002830571.1|	-	5.5e-13	48.1	39.1	1.4e-07	31.0	2.1	5.3	6	0	0	6	6	5	4	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|227828791|ref|YP_002830571.1|	-	1.7e-12	47.7	27.5	2.9e-06	27.8	10.2	3.0	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828791|ref|YP_002830571.1|	-	5.7e-11	42.4	24.1	4.3e-06	26.8	11.2	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828791|ref|YP_002830571.1|	-	1.6e-10	40.6	37.6	1e-06	28.5	1.8	4.7	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|227828791|ref|YP_002830571.1|	-	4.5e-08	33.1	33.4	1e-05	25.5	9.1	3.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227828791|ref|YP_002830571.1|	-	1.7e-07	31.3	26.1	0.00044	20.3	6.2	2.9	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828791|ref|YP_002830571.1|	-	4.4e-07	30.7	25.6	0.043	14.8	2.3	4.4	3	1	1	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|227828791|ref|YP_002830571.1|	-	6e-06	26.0	35.3	4.6e-05	23.3	1.5	4.5	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|227828791|ref|YP_002830571.1|	-	3.4e-05	24.5	39.8	0.07	14.1	2.3	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
DmsC	PF04976.12	gi|227828791|ref|YP_002830571.1|	-	6.7e-05	22.5	10.5	0.00011	21.8	10.5	1.3	1	0	0	1	1	1	1	DMSO	reductase	anchor	subunit	(DmsC)
Fer4_4	PF12800.7	gi|227828791|ref|YP_002830571.1|	-	0.00034	20.9	32.3	0.0022	18.3	3.1	4.4	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227828791|ref|YP_002830571.1|	-	0.011	15.9	1.6	0.011	15.9	1.6	3.4	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828791|ref|YP_002830571.1|	-	0.03	14.9	25.1	3.7	8.1	0.7	4.2	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
DUF997	PF06196.12	gi|227828791|ref|YP_002830571.1|	-	0.073	13.1	0.2	0.073	13.1	0.2	3.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF997)
Fer4_8	PF13183.6	gi|227828791|ref|YP_002830571.1|	-	1.1	9.7	31.4	0.27	11.7	2.1	4.0	2	2	2	4	4	4	0	4Fe-4S	dicluster	domain
DUF2427	PF10348.9	gi|227828791|ref|YP_002830571.1|	-	1.5	8.7	13.5	17	5.3	0.1	3.3	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF2427)
Fer4_15	PF13459.6	gi|227828791|ref|YP_002830571.1|	-	2.7	8.8	20.2	0.17	12.6	0.7	3.8	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain
POR	PF01558.18	gi|227828792|ref|YP_002830572.1|	-	7.6e-36	123.8	0.0	1.1e-35	123.2	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.27	gi|227828793|ref|YP_002830573.1|	-	3.9e-15	54.9	16.2	7e-09	35.1	4.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|227828793|ref|YP_002830573.1|	-	1.5e-12	47.0	15.3	4.1e-06	26.6	4.3	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828793|ref|YP_002830573.1|	-	9.8e-12	44.8	9.5	1.3e-11	44.4	9.5	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828793|ref|YP_002830573.1|	-	9.7e-11	41.6	22.4	1.1e-07	31.8	12.3	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828793|ref|YP_002830573.1|	-	2.4e-10	40.8	22.3	2.4e-08	34.4	12.8	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828793|ref|YP_002830573.1|	-	1.8e-09	37.1	13.7	0.00013	21.9	2.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|227828793|ref|YP_002830573.1|	-	8.3e-09	36.3	10.2	0.00013	22.8	2.5	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|227828793|ref|YP_002830573.1|	-	1e-08	35.2	10.7	1.4e-08	34.7	10.7	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227828793|ref|YP_002830573.1|	-	4.5e-08	33.0	13.0	0.00033	20.9	1.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|227828793|ref|YP_002830573.1|	-	1.1e-05	25.9	10.0	0.003	18.1	1.1	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|227828793|ref|YP_002830573.1|	-	1.2e-05	25.9	10.0	0.044	14.5	0.3	2.9	2	1	1	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|227828793|ref|YP_002830573.1|	-	4e-05	24.1	6.8	0.029	14.9	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|227828793|ref|YP_002830573.1|	-	0.00039	21.2	8.1	0.091	13.6	1.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227828793|ref|YP_002830573.1|	-	0.0012	19.2	14.6	0.51	10.8	3.2	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|227828793|ref|YP_002830573.1|	-	0.0053	17.6	19.6	0.18	12.8	8.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|227828793|ref|YP_002830573.1|	-	0.54	10.5	11.5	1.7	8.8	1.3	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
POR_N	PF01855.19	gi|227828794|ref|YP_002830574.1|	-	9.9e-69	231.6	0.0	1.3e-68	231.2	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|227828794|ref|YP_002830574.1|	-	1.1e-27	96.3	0.1	2.5e-27	95.2	0.0	1.7	2	0	0	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|227828794|ref|YP_002830574.1|	-	2e-07	30.9	0.0	3.8e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|227828794|ref|YP_002830574.1|	-	0.0007	19.3	0.2	0.0012	18.5	0.2	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
SHOCT	PF09851.9	gi|227828794|ref|YP_002830574.1|	-	0.16	11.8	0.3	0.41	10.4	0.3	1.8	1	0	0	1	1	1	0	Short	C-terminal	domain
TPP_enzyme_C	PF02775.21	gi|227828795|ref|YP_002830575.1|	-	5.9e-23	81.3	0.5	7.8e-23	81.0	0.5	1.1	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.20	gi|227828795|ref|YP_002830575.1|	-	0.00057	18.9	0.1	0.00082	18.4	0.1	1.2	1	0	0	1	1	1	1	Dehydrogenase	E1	component
Peptidase_M24_C	PF16188.5	gi|227828795|ref|YP_002830575.1|	-	0.024	14.7	0.1	0.045	13.8	0.1	1.4	1	0	0	1	1	1	0	C-terminal	region	of	peptidase_M24
DXP_synthase_N	PF13292.6	gi|227828795|ref|YP_002830575.1|	-	0.048	12.8	0.5	0.14	11.3	0.2	1.7	1	1	1	2	2	2	0	1-deoxy-D-xylulose-5-phosphate	synthase
Glycos_transf_1	PF00534.20	gi|227828796|ref|YP_002830576.1|	-	5.4e-35	120.4	0.2	1.6e-34	118.9	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227828796|ref|YP_002830576.1|	-	9.9e-24	84.3	0.0	1.8e-23	83.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227828796|ref|YP_002830576.1|	-	3.6e-05	24.1	0.0	8.9e-05	22.8	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_20	PF00982.21	gi|227828796|ref|YP_002830576.1|	-	0.003	16.3	0.2	0.029	13.1	0.1	2.2	2	1	0	2	2	2	1	Glycosyltransferase	family	20
Glyco_hydro_15	PF00723.21	gi|227828797|ref|YP_002830577.1|	-	2.9e-53	181.3	0.4	6.7e-50	170.2	0.8	2.0	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
TPR_8	PF13181.6	gi|227828797|ref|YP_002830577.1|	-	0.043	14.1	2.0	3.4	8.1	0.0	3.9	4	0	0	4	4	4	0	Tetratricopeptide	repeat
DUF1803	PF08820.10	gi|227828798|ref|YP_002830578.1|	-	0.045	13.8	0.3	0.09	12.8	0.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
FtsX_ECD	PF18075.1	gi|227828799|ref|YP_002830579.1|	-	0.0049	17.5	1.3	4.6	7.9	0.0	3.2	3	0	0	3	3	3	1	FtsX	extracellular	domain
DUF1803	PF08820.10	gi|227828799|ref|YP_002830579.1|	-	0.0055	16.7	1.7	0.0055	16.7	1.7	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1803)
SelB-wing_2	PF09106.11	gi|227828799|ref|YP_002830579.1|	-	0.011	16.0	0.2	3	8.1	0.0	2.7	3	0	0	3	3	3	0	Elongation	factor	SelB,	winged	helix
TBPIP	PF07106.13	gi|227828799|ref|YP_002830579.1|	-	0.017	15.1	1.1	0.035	14.0	0.4	1.9	2	0	0	2	2	2	0	TBPIP/Hop2	winged	helix	domain
LexA_DNA_bind	PF01726.16	gi|227828799|ref|YP_002830579.1|	-	0.061	13.1	0.5	0.63	9.9	0.1	2.6	2	1	0	2	2	2	0	LexA	DNA	binding	domain
ESCRT-II	PF05871.12	gi|227828799|ref|YP_002830579.1|	-	0.067	13.5	0.2	0.087	13.1	0.2	1.3	1	0	0	1	1	1	0	ESCRT-II	complex	subunit
AAA_16	PF13191.6	gi|227828800|ref|YP_002830580.1|	-	2.4e-05	24.8	0.0	6.1e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|227828800|ref|YP_002830580.1|	-	6.2e-05	23.5	0.0	0.00024	21.6	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_22	PF13401.6	gi|227828800|ref|YP_002830580.1|	-	0.00014	22.1	0.0	0.00077	19.7	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|227828800|ref|YP_002830580.1|	-	0.00053	20.3	0.2	0.011	16.0	0.2	2.4	1	1	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|227828800|ref|YP_002830580.1|	-	0.00061	19.7	0.2	0.01	15.8	0.2	2.6	3	0	0	3	3	2	1	NTPase
AAA	PF00004.29	gi|227828800|ref|YP_002830580.1|	-	0.0015	18.9	0.2	0.0078	16.6	0.0	2.3	2	2	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Img2	PF05046.14	gi|227828800|ref|YP_002830580.1|	-	0.0021	18.3	0.1	0.25	11.7	0.0	3.4	3	0	0	3	3	3	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
AAA_30	PF13604.6	gi|227828800|ref|YP_002830580.1|	-	0.003	17.3	0.0	0.0062	16.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|227828800|ref|YP_002830580.1|	-	0.0051	16.7	0.0	0.014	15.3	0.0	1.7	2	0	0	2	2	2	1	NACHT	domain
AAA_14	PF13173.6	gi|227828800|ref|YP_002830580.1|	-	0.0076	16.3	2.3	0.041	13.9	0.1	2.9	2	2	2	4	4	3	1	AAA	domain
NB-ARC	PF00931.22	gi|227828800|ref|YP_002830580.1|	-	0.0094	15.2	0.1	0.029	13.6	0.0	1.8	2	0	0	2	2	2	1	NB-ARC	domain
ATP_bind_1	PF03029.17	gi|227828800|ref|YP_002830580.1|	-	0.01	15.7	0.1	0.046	13.5	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|227828800|ref|YP_002830580.1|	-	0.019	14.9	0.0	0.047	13.6	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|227828800|ref|YP_002830580.1|	-	0.02	14.2	0.0	0.057	12.7	0.0	1.8	1	0	0	1	1	1	0	Zeta	toxin
MCM	PF00493.23	gi|227828800|ref|YP_002830580.1|	-	0.044	12.9	0.0	0.075	12.1	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
AAA_5	PF07728.14	gi|227828800|ref|YP_002830580.1|	-	0.044	13.8	0.0	0.23	11.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.6	gi|227828800|ref|YP_002830580.1|	-	0.047	13.3	0.0	0.2	11.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|227828800|ref|YP_002830580.1|	-	0.071	12.7	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Roc	PF08477.13	gi|227828800|ref|YP_002830580.1|	-	0.08	13.2	0.1	0.28	11.4	0.0	1.9	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_17	PF13207.6	gi|227828800|ref|YP_002830580.1|	-	0.083	13.3	0.1	0.36	11.3	0.0	2.1	2	0	0	2	2	1	0	AAA	domain
TniB	PF05621.11	gi|227828800|ref|YP_002830580.1|	-	0.1	12.0	0.2	4.5	6.6	0.0	2.6	2	1	0	2	2	2	0	Bacterial	TniB	protein
SRP54	PF00448.22	gi|227828800|ref|YP_002830580.1|	-	0.13	11.8	0.2	0.52	9.9	0.1	2.0	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
IL2	PF00715.17	gi|227828800|ref|YP_002830580.1|	-	0.16	11.9	6.7	1.4	8.8	0.8	2.7	2	1	0	2	2	2	0	Interleukin	2
U3snoRNP10	PF12397.8	gi|227828800|ref|YP_002830580.1|	-	0.17	12.3	0.2	23	5.4	0.0	2.8	2	1	0	2	2	2	0	U3	small	nucleolar	RNA-associated	protein	10
DUF4795	PF16043.5	gi|227828800|ref|YP_002830580.1|	-	1.5	8.3	5.2	4.9	6.7	5.2	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
Linocin_M18	PF04454.12	gi|227828801|ref|YP_002830581.1|	-	1.5e-36	126.0	0.0	2.1e-36	125.5	0.0	1.1	1	0	0	1	1	1	1	Encapsulating	protein	for	peroxidase
Rubrerythrin	PF02915.17	gi|227828801|ref|YP_002830581.1|	-	0.00072	20.0	0.6	0.0014	19.0	0.6	1.5	1	0	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|227828801|ref|YP_002830581.1|	-	0.0043	17.0	0.1	0.0075	16.2	0.1	1.4	1	0	0	1	1	1	1	Ferritin-like	domain
Baculo_VP1054	PF05789.11	gi|227828801|ref|YP_002830581.1|	-	0.058	12.6	0.5	0.58	9.3	0.5	2.1	1	1	0	1	1	1	0	Baculovirus	VP1054	protein
DUF4162	PF13732.6	gi|227828802|ref|YP_002830582.1|	-	0.018	15.8	1.2	7	7.5	0.1	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4162)
Aldose_epim	PF01263.20	gi|227828803|ref|YP_002830583.1|	-	1.6e-34	119.6	0.0	3.1e-34	118.7	0.0	1.4	1	1	0	1	1	1	1	Aldose	1-epimerase
MFS_1	PF07690.16	gi|227828804|ref|YP_002830584.1|	-	1e-19	70.7	44.4	1.8e-11	43.6	19.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|227828804|ref|YP_002830584.1|	-	8.4e-09	34.8	28.3	3.3e-08	32.8	28.3	1.8	1	1	0	1	1	1	1	MFS_1	like	family
MFS_3	PF05977.13	gi|227828804|ref|YP_002830584.1|	-	0.5	8.7	10.8	0.54	8.6	3.4	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
DUF2173	PF09941.9	gi|227828805|ref|YP_002830585.1|	-	9e-40	135.3	0.3	1e-39	135.1	0.3	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
FlgM	PF04316.13	gi|227828805|ref|YP_002830585.1|	-	0.054	13.9	0.0	0.23	11.8	0.0	2.0	2	0	0	2	2	2	0	Anti-sigma-28	factor,	FlgM
Radical_SAM	PF04055.21	gi|227828806|ref|YP_002830586.1|	-	3.6e-13	50.2	0.0	4.7e-13	49.8	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|227828806|ref|YP_002830586.1|	-	0.011	15.5	3.4	0.21	11.3	0.0	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1848)
AP_endonuc_2	PF01261.24	gi|227828806|ref|YP_002830586.1|	-	0.11	12.0	0.1	0.46	9.9	0.0	2.1	3	1	0	3	3	3	0	Xylose	isomerase-like	TIM	barrel
Nre_N	PF04894.12	gi|227828807|ref|YP_002830587.1|	-	4.6e-92	308.7	0.0	6.1e-92	308.3	0.0	1.2	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|227828807|ref|YP_002830587.1|	-	3.4e-35	120.3	0.0	5.5e-35	119.6	0.0	1.3	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
Glyco_hydro_15	PF00723.21	gi|227828808|ref|YP_002830588.1|	-	8.8e-60	202.7	0.0	7.4e-56	189.8	0.0	2.1	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
TPR_8	PF13181.6	gi|227828808|ref|YP_002830588.1|	-	0.043	14.0	0.1	1.6	9.2	0.0	2.5	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Glyco_hydro_125	PF06824.11	gi|227828808|ref|YP_002830588.1|	-	0.051	12.4	0.0	0.37	9.6	0.0	2.1	2	0	0	2	2	2	0	Metal-independent	alpha-mannosidase	(GH125)
TPR_19	PF14559.6	gi|227828808|ref|YP_002830588.1|	-	0.058	13.9	0.0	0.35	11.4	0.0	2.0	2	0	0	2	2	2	0	Tetratricopeptide	repeat
CBS	PF00571.28	gi|227828810|ref|YP_002830590.1|	-	1.9e-52	175.5	12.4	2.1e-14	53.7	0.1	4.1	4	0	0	4	4	4	4	CBS	domain
Ribosomal_L9_C	PF03948.14	gi|227828810|ref|YP_002830590.1|	-	0.0097	16.4	0.1	2.8	8.5	0.0	3.1	3	0	0	3	3	3	1	Ribosomal	protein	L9,	C-terminal	domain
Acetyltransf_1	PF00583.25	gi|227828810|ref|YP_002830590.1|	-	0.15	12.3	0.0	2.5	8.4	0.0	2.3	2	1	0	2	2	2	0	Acetyltransferase	(GNAT)	family
HpaB_N	PF11794.8	gi|227828811|ref|YP_002830591.1|	-	5.2e-91	305.1	0.4	5.2e-91	305.1	0.4	1.4	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.13	gi|227828811|ref|YP_002830591.1|	-	1.3e-63	213.8	0.0	1.9e-63	213.2	0.0	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Peptidase_M20	PF01546.28	gi|227828812|ref|YP_002830592.1|	-	1.1e-39	136.3	0.0	1.5e-39	135.8	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|227828812|ref|YP_002830592.1|	-	8.9e-17	61.0	0.0	7.7e-16	58.0	0.0	2.2	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
DUF433	PF04255.14	gi|227828813|ref|YP_002830593.1|	-	4.9e-17	61.5	0.0	9e-12	44.7	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF433)
Tox-REase-3	PF15647.6	gi|227828813|ref|YP_002830593.1|	-	0.013	15.8	1.4	0.16	12.2	0.5	2.2	1	1	1	2	2	2	0	Restriction	endonuclease	fold	toxin	3
Pro_CA	PF00484.19	gi|227828814|ref|YP_002830594.1|	-	9.9e-09	35.7	0.0	5.4e-08	33.3	0.0	1.9	2	0	0	2	2	2	1	Carbonic	anhydrase
STAR_dimer	PF16544.5	gi|227828815|ref|YP_002830595.1|	-	0.11	12.1	0.0	0.28	10.8	0.0	1.7	2	0	0	2	2	2	0	Homodimerisation	region	of	STAR	domain	protein
DUF1398	PF07166.11	gi|227828816|ref|YP_002830596.1|	-	0.051	13.6	0.1	0.067	13.3	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1398)
UDG	PF03167.19	gi|227828817|ref|YP_002830597.1|	-	3.3e-33	114.9	0.0	4e-33	114.6	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
Arginase	PF00491.21	gi|227828818|ref|YP_002830598.1|	-	1.5e-78	264.1	0.0	1.8e-78	263.9	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
DUF2396	PF09654.10	gi|227828818|ref|YP_002830598.1|	-	0.053	13.6	0.3	0.091	12.9	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2396)
AA_permease	PF00324.21	gi|227828819|ref|YP_002830599.1|	-	1.7e-98	330.3	48.1	2.2e-98	329.9	48.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|227828819|ref|YP_002830599.1|	-	4e-12	45.7	53.1	5.4e-12	45.3	53.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Aminotran_3	PF00202.21	gi|227828820|ref|YP_002830600.1|	-	2.3e-104	349.3	0.0	2.6e-104	349.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
ATP-grasp_6	PF18419.1	gi|227828820|ref|YP_002830600.1|	-	0.00075	19.1	0.0	0.21	11.2	0.0	3.2	4	0	0	4	4	4	2	ATP-grasp-like	domain
PIN_6	PF17146.4	gi|227828820|ref|YP_002830600.1|	-	0.16	12.5	0.1	0.79	10.3	0.1	2.0	2	0	0	2	2	2	0	PIN	domain	of	ribonuclease
AA_permease_2	PF13520.6	gi|227828821|ref|YP_002830601.1|	-	2.6e-53	181.4	71.8	3.2e-53	181.1	71.8	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227828821|ref|YP_002830601.1|	-	0.63	8.6	65.8	0.11	11.1	56.9	2.1	1	1	1	2	2	2	0	Amino	acid	permease
Metallophos	PF00149.28	gi|227828822|ref|YP_002830602.1|	-	6.3e-08	33.4	1.0	3.3e-07	31.0	1.0	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|227828822|ref|YP_002830602.1|	-	5.2e-07	30.0	0.0	0.0042	17.3	0.0	2.3	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|227828822|ref|YP_002830602.1|	-	9.7e-05	21.8	0.5	0.021	14.1	0.1	2.9	2	2	0	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
Aminotran_3	PF00202.21	gi|227828823|ref|YP_002830603.1|	-	1.3e-88	297.4	0.0	1.5e-88	297.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Peptidase_M20	PF01546.28	gi|227828824|ref|YP_002830604.1|	-	7.3e-31	107.5	0.0	9.8e-31	107.1	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|227828824|ref|YP_002830604.1|	-	1.7e-07	31.2	0.1	4.2e-07	29.9	0.0	1.7	1	1	1	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|227828824|ref|YP_002830604.1|	-	2e-05	24.4	0.0	3.3e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
AurF	PF11583.8	gi|227828825|ref|YP_002830605.1|	-	0.11	11.8	0.0	0.17	11.2	0.0	1.2	1	0	0	1	1	1	0	P-aminobenzoate	N-oxygenase	AurF
MFS_1	PF07690.16	gi|227828826|ref|YP_002830606.1|	-	1.1e-45	156.1	28.6	1.8e-45	155.4	28.6	1.3	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|227828826|ref|YP_002830606.1|	-	4.8e-08	32.7	0.2	4.8e-08	32.7	0.2	2.7	3	0	0	3	3	3	1	Uncharacterised	MFS-type	transporter	YbfB
OATP	PF03137.20	gi|227828826|ref|YP_002830606.1|	-	0.00065	18.1	10.7	0.16	10.2	0.3	2.8	1	1	1	2	2	2	2	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Herpes_LMP1	PF05297.11	gi|227828826|ref|YP_002830606.1|	-	0.17	11.1	2.3	0.34	10.1	2.3	1.4	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
ADH_N	PF08240.12	gi|227828827|ref|YP_002830607.1|	-	1.4e-21	76.5	0.7	6.2e-21	74.3	0.7	2.0	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ApbA	PF02558.16	gi|227828827|ref|YP_002830607.1|	-	0.0076	15.9	0.1	0.012	15.3	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ADH_zinc_N	PF00107.26	gi|227828827|ref|YP_002830607.1|	-	0.022	14.7	0.0	0.17	11.9	0.0	2.2	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
TrkA_N	PF02254.18	gi|227828827|ref|YP_002830607.1|	-	0.12	12.7	3.7	0.15	12.3	0.3	2.3	1	1	1	2	2	2	0	TrkA-N	domain
FAD_binding_3	PF01494.19	gi|227828827|ref|YP_002830607.1|	-	0.12	11.6	0.1	0.16	11.2	0.1	1.2	1	0	0	1	1	1	0	FAD	binding	domain
MFS_1	PF07690.16	gi|227828828|ref|YP_002830608.1|	-	8.7e-52	176.2	48.6	8.7e-52	176.2	48.6	2.2	2	1	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227828828|ref|YP_002830608.1|	-	7.6e-10	38.2	15.8	7.6e-10	38.2	15.8	3.0	2	1	1	3	3	3	1	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|227828828|ref|YP_002830608.1|	-	1e-05	24.2	11.4	1e-05	24.2	11.4	2.3	2	0	0	2	2	2	2	Transmembrane	secretion	effector
BPD_transp_1	PF00528.22	gi|227828829|ref|YP_002830609.1|	-	1.4e-10	41.2	22.9	1.4e-10	41.2	22.9	4.3	2	2	1	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|227828830|ref|YP_002830610.1|	-	2.1e-35	122.2	0.0	3.5e-35	121.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828830|ref|YP_002830610.1|	-	1.2e-10	41.7	0.1	0.00029	20.7	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|227828830|ref|YP_002830610.1|	-	0.00015	22.4	3.5	0.00073	20.1	0.6	2.4	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|227828830|ref|YP_002830610.1|	-	0.00027	20.4	3.4	0.0017	17.8	3.4	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TOBE_2	PF08402.10	gi|227828830|ref|YP_002830610.1|	-	0.0003	20.9	0.0	0.0013	18.8	0.0	2.0	2	0	0	2	2	2	1	TOBE	domain
AAA_13	PF13166.6	gi|227828830|ref|YP_002830610.1|	-	0.00056	18.7	0.0	0.068	11.8	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|227828830|ref|YP_002830610.1|	-	0.0012	18.7	0.4	0.004	16.9	0.5	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|227828830|ref|YP_002830610.1|	-	0.0022	17.7	0.2	0.0062	16.3	0.2	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|227828830|ref|YP_002830610.1|	-	0.0035	17.6	0.0	0.0094	16.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|227828830|ref|YP_002830610.1|	-	0.0068	16.3	0.7	0.013	15.4	0.1	1.7	2	0	0	2	2	2	1	RsgA	GTPase
AAA_18	PF13238.6	gi|227828830|ref|YP_002830610.1|	-	0.008	16.7	0.1	0.018	15.6	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
PIF1	PF05970.14	gi|227828830|ref|YP_002830610.1|	-	0.013	14.7	0.2	0.14	11.3	0.1	2.1	2	0	0	2	2	2	0	PIF1-like	helicase
ATPase_2	PF01637.18	gi|227828830|ref|YP_002830610.1|	-	0.014	15.3	0.4	0.031	14.2	0.4	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|227828830|ref|YP_002830610.1|	-	0.02	14.8	0.1	0.036	14.0	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.6	gi|227828830|ref|YP_002830610.1|	-	0.041	14.3	0.0	0.075	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|227828830|ref|YP_002830610.1|	-	0.073	12.3	0.7	0.21	10.7	0.7	1.7	1	1	0	1	1	1	0	NB-ARC	domain
ABC_ATPase	PF09818.9	gi|227828830|ref|YP_002830610.1|	-	0.077	11.8	0.3	13	4.4	0.2	2.8	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.6	gi|227828830|ref|YP_002830610.1|	-	0.087	12.5	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DnaB_C	PF03796.15	gi|227828830|ref|YP_002830610.1|	-	0.095	12.0	0.5	0.38	10.0	0.5	2.1	1	1	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
AAA_33	PF13671.6	gi|227828830|ref|YP_002830610.1|	-	0.13	12.4	0.1	0.26	11.4	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
SBP_bac_8	PF13416.6	gi|227828831|ref|YP_002830611.1|	-	4e-17	62.9	0.2	9.6e-17	61.7	0.2	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|227828831|ref|YP_002830611.1|	-	6.6e-13	49.3	0.9	3.2e-12	47.0	0.1	2.4	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|227828831|ref|YP_002830611.1|	-	0.0002	21.2	0.2	0.0045	16.8	0.0	2.5	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Pilin_N	PF07790.11	gi|227828831|ref|YP_002830611.1|	-	0.014	16.3	3.5	0.028	15.4	3.5	1.4	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
DUF4330	PF14221.6	gi|227828831|ref|YP_002830611.1|	-	0.041	14.1	2.2	0.074	13.3	2.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4330)
DUF4307	PF14155.6	gi|227828831|ref|YP_002830611.1|	-	0.055	13.3	2.0	0.11	12.3	2.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
CxxCxxCC	PF03692.15	gi|227828832|ref|YP_002830612.1|	-	3.9e-09	37.1	1.7	5.6e-09	36.6	1.7	1.3	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
TPR_11	PF13414.6	gi|227828833|ref|YP_002830613.1|	-	9.1e-28	95.7	30.1	2.9e-07	30.1	0.2	6.5	5	2	2	7	7	6	6	TPR	repeat
TPR_1	PF00515.28	gi|227828833|ref|YP_002830613.1|	-	3.9e-27	92.9	26.2	1.2e-07	31.3	0.6	6.8	7	0	0	7	7	7	5	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|227828833|ref|YP_002830613.1|	-	9.5e-27	90.9	24.5	1e-05	25.2	0.1	7.5	7	1	0	7	7	7	5	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|227828833|ref|YP_002830613.1|	-	1.1e-24	86.5	11.5	9.9e-08	32.1	1.1	3.2	2	1	1	3	3	3	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_8	PF13181.6	gi|227828833|ref|YP_002830613.1|	-	8.3e-22	75.5	29.7	2.7e-06	27.2	0.3	7.0	7	1	0	7	7	7	5	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|227828833|ref|YP_002830613.1|	-	8.9e-22	77.4	3.9	1.1e-07	32.2	0.0	4.1	3	1	1	4	4	4	3	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|227828833|ref|YP_002830613.1|	-	9.2e-19	67.8	0.3	0.00014	22.5	0.0	4.0	3	2	1	4	4	4	4	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|227828833|ref|YP_002830613.1|	-	5.9e-16	57.8	0.6	0.0017	19.0	0.0	5.6	4	3	2	6	6	5	3	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|227828833|ref|YP_002830613.1|	-	1.1e-12	48.1	9.5	0.0061	16.8	1.0	5.0	2	2	1	4	4	4	4	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|227828833|ref|YP_002830613.1|	-	4e-12	46.1	0.0	0.0015	18.7	0.0	3.6	3	1	0	3	3	3	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|227828833|ref|YP_002830613.1|	-	3.2e-11	42.4	9.9	0.00036	20.4	0.1	5.7	5	1	1	6	6	5	3	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|227828833|ref|YP_002830613.1|	-	4.2e-11	42.4	13.1	0.011	16.1	0.0	6.7	7	1	1	8	8	7	3	Tetratricopeptide	repeat
TPR_15	PF13429.6	gi|227828833|ref|YP_002830613.1|	-	4.2e-10	39.3	0.8	3.6e-05	23.1	0.2	3.1	2	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_21	PF09976.9	gi|227828833|ref|YP_002830613.1|	-	4e-08	33.2	2.2	5.9e-06	26.1	0.2	2.7	2	1	0	2	2	2	1	Tetratricopeptide	repeat-like	domain
TPR_20	PF14561.6	gi|227828833|ref|YP_002830613.1|	-	5.6e-08	33.0	0.7	0.00079	19.7	0.0	3.8	2	1	1	4	4	4	1	Tetratricopeptide	repeat
NARP1	PF12569.8	gi|227828833|ref|YP_002830613.1|	-	9e-08	31.5	13.0	0.0012	17.8	0.3	3.2	2	1	1	3	3	3	3	NMDA	receptor-regulated	protein	1
TPR_6	PF13174.6	gi|227828833|ref|YP_002830613.1|	-	2e-07	31.2	14.2	0.039	14.6	0.2	5.7	6	0	0	6	6	5	2	Tetratricopeptide	repeat
SRP_TPR_like	PF17004.5	gi|227828833|ref|YP_002830613.1|	-	8e-06	25.9	21.1	0.0028	17.7	3.9	3.6	1	1	3	4	4	4	3	Putative	TPR-like	repeat
Fis1_TPR_C	PF14853.6	gi|227828833|ref|YP_002830613.1|	-	0.00018	21.5	20.2	0.046	13.8	0.3	5.3	6	0	0	6	6	6	2	Fis1	C-terminal	tetratricopeptide	repeat
TPR_10	PF13374.6	gi|227828833|ref|YP_002830613.1|	-	0.00058	19.6	9.1	0.27	11.2	0.1	5.0	6	0	0	6	6	4	1	Tetratricopeptide	repeat
DUF627	PF04781.12	gi|227828833|ref|YP_002830613.1|	-	0.0015	18.5	1.1	2	8.5	0.0	3.9	3	2	2	5	5	5	1	Protein	of	unknown	function	(DUF627)
CLTH	PF10607.9	gi|227828833|ref|YP_002830613.1|	-	0.0017	18.2	6.1	0.99	9.3	0.2	3.2	2	1	1	3	3	3	2	CTLH/CRA	C-terminal	to	LisH	motif	domain
Phage_term_smal	PF05944.12	gi|227828833|ref|YP_002830613.1|	-	0.0052	16.7	0.6	0.035	14.1	0.1	2.6	2	2	0	2	2	2	1	Phage	small	terminase	subunit
TPR_3	PF07720.12	gi|227828833|ref|YP_002830613.1|	-	0.023	14.7	24.0	0.028	14.4	3.0	6.1	6	0	0	6	6	6	0	Tetratricopeptide	repeat
TPR_MalT	PF17874.1	gi|227828833|ref|YP_002830613.1|	-	0.026	13.9	0.0	0.56	9.5	0.0	2.6	2	1	0	2	2	2	0	MalT-like	TPR	region
DUF5113	PF17140.4	gi|227828833|ref|YP_002830613.1|	-	0.03	14.1	9.1	0.34	10.7	0.6	3.8	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF5113)
RPN7	PF10602.9	gi|227828833|ref|YP_002830613.1|	-	0.032	14.0	14.8	0.44	10.2	2.3	3.3	2	1	1	3	3	3	0	26S	proteasome	subunit	RPN7
HemY_N	PF07219.13	gi|227828833|ref|YP_002830613.1|	-	0.13	12.5	0.1	22	5.3	0.0	2.9	2	1	1	3	3	3	0	HemY	protein	N-terminus
HEAT_2	PF13646.6	gi|227828833|ref|YP_002830613.1|	-	0.14	12.5	0.0	0.62	10.5	0.0	2.1	2	0	0	2	2	1	0	HEAT	repeats
Glyoxalase_4	PF13669.6	gi|227828833|ref|YP_002830613.1|	-	0.18	12.1	0.0	0.72	10.2	0.0	2.0	2	0	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF3856	PF12968.7	gi|227828833|ref|YP_002830613.1|	-	0.46	10.5	3.5	7.6	6.6	0.1	4.0	3	1	2	5	5	5	0	Domain	of	Unknown	Function	(DUF3856)
Rep_fac_C	PF08542.11	gi|227828833|ref|YP_002830613.1|	-	0.5	10.8	2.1	41	4.7	0.1	3.5	3	0	0	3	3	3	0	Replication	factor	C	C-terminal	domain
YfdX	PF10938.8	gi|227828833|ref|YP_002830613.1|	-	1.3	9.0	4.2	57	3.6	0.1	3.9	5	0	0	5	5	4	0	YfdX	protein
DUF2225	PF09986.9	gi|227828833|ref|YP_002830613.1|	-	3.4	7.3	16.8	0.33	10.7	0.2	3.5	2	1	2	4	4	4	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
MIT	PF04212.18	gi|227828833|ref|YP_002830613.1|	-	5.6	7.1	23.1	4.6	7.4	1.0	7.0	6	2	0	7	7	7	0	MIT	(microtubule	interacting	and	transport)	domain
AIRS_C	PF02769.22	gi|227828834|ref|YP_002830614.1|	-	1.7e-21	77.0	0.1	3e-21	76.2	0.1	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|227828834|ref|YP_002830614.1|	-	5.8e-12	46.1	0.1	1e-11	45.3	0.1	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
DoxX	PF07681.12	gi|227828835|ref|YP_002830615.1|	-	1.1e-11	45.1	4.5	1.1e-11	45.1	4.5	1.6	2	0	0	2	2	2	1	DoxX
DoxX_2	PF13564.6	gi|227828835|ref|YP_002830615.1|	-	0.00059	19.9	5.8	0.00074	19.6	4.7	1.8	1	1	1	2	2	2	1	DoxX-like	family
DUF417	PF04224.12	gi|227828835|ref|YP_002830615.1|	-	0.66	9.5	6.6	0.81	9.2	6.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
PNP_UDP_1	PF01048.20	gi|227828836|ref|YP_002830616.1|	-	1.3e-37	129.3	0.0	1.5e-37	129.1	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
SGL	PF08450.12	gi|227828837|ref|YP_002830617.1|	-	1.6e-81	273.6	0.1	1.8e-81	273.4	0.1	1.0	1	0	0	1	1	1	1	SMP-30/Gluconolactonase/LRE-like	region
Arylesterase	PF01731.20	gi|227828837|ref|YP_002830617.1|	-	7.6e-05	22.8	0.0	0.0002	21.5	0.0	1.7	1	0	0	1	1	1	1	Arylesterase
Reg_prop	PF07494.11	gi|227828837|ref|YP_002830617.1|	-	0.012	15.8	1.2	2.9	8.4	0.1	3.4	3	0	0	3	3	3	0	Two	component	regulator	propeller
Str_synth	PF03088.16	gi|227828837|ref|YP_002830617.1|	-	0.071	13.2	0.0	0.15	12.2	0.0	1.5	1	0	0	1	1	1	0	Strictosidine	synthase
Ldl_recept_b	PF00058.17	gi|227828837|ref|YP_002830617.1|	-	0.1	13.1	0.0	0.95	10.0	0.0	2.3	2	0	0	2	2	2	0	Low-density	lipoprotein	receptor	repeat	class	B
MFS_1	PF07690.16	gi|227828838|ref|YP_002830618.1|	-	7.1e-40	137.0	61.9	5.6e-26	91.3	25.3	3.1	1	1	1	3	3	3	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227828838|ref|YP_002830618.1|	-	1.4e-07	30.8	36.5	7.4e-06	25.1	16.1	2.7	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|227828838|ref|YP_002830618.1|	-	0.0014	17.1	2.5	0.0014	17.1	2.5	2.6	3	0	0	3	3	3	2	Transmembrane	secretion	effector
DUF2583	PF10762.9	gi|227828838|ref|YP_002830618.1|	-	0.74	10.3	8.6	0.26	11.7	0.5	3.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
OATP	PF03137.20	gi|227828838|ref|YP_002830618.1|	-	5.1	5.3	20.8	0.3	9.3	1.8	3.7	3	1	0	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF3671	PF12420.8	gi|227828840|ref|YP_002830620.1|	-	0.015	15.4	0.1	0.015	15.3	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function
B277	PF17623.2	gi|227828840|ref|YP_002830620.1|	-	0.87	8.6	3.0	0.93	8.5	3.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function
MFS_1	PF07690.16	gi|227828842|ref|YP_002830622.1|	-	3.1e-20	72.4	36.0	1.9e-11	43.5	16.4	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|227828842|ref|YP_002830622.1|	-	0.00015	20.8	0.7	0.00015	20.8	0.7	2.6	2	1	1	3	3	3	1	MFS_1	like	family
Sugar_tr	PF00083.24	gi|227828842|ref|YP_002830622.1|	-	0.00026	20.0	10.9	0.00026	20.0	10.9	2.7	1	1	2	3	3	3	1	Sugar	(and	other)	transporter
TENA_THI-4	PF03070.16	gi|227828843|ref|YP_002830623.1|	-	3.2e-50	170.9	0.2	4.2e-50	170.5	0.2	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
zf-C2H2_9	PF16293.5	gi|227828843|ref|YP_002830623.1|	-	3.2e-28	97.3	2.5	9.5e-28	95.8	2.5	1.9	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
Haem_oxygenas_2	PF14518.6	gi|227828843|ref|YP_002830623.1|	-	6.5e-16	58.6	0.1	9.3e-16	58.1	0.1	1.2	1	0	0	1	1	1	1	Iron-containing	redox	enzyme
zf-C2H2	PF00096.26	gi|227828843|ref|YP_002830623.1|	-	0.0041	17.5	0.0	0.0099	16.3	0.0	1.7	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|227828843|ref|YP_002830623.1|	-	0.032	15.1	0.0	0.086	13.7	0.0	1.7	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-met	PF12874.7	gi|227828843|ref|YP_002830623.1|	-	0.083	13.3	0.0	0.17	12.3	0.0	1.5	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
FeoA	PF04023.14	gi|227828843|ref|YP_002830623.1|	-	0.1	12.9	0.0	0.19	12.0	0.0	1.4	1	0	0	1	1	1	0	FeoA	domain
zf-C2H2_2	PF12756.7	gi|227828843|ref|YP_002830623.1|	-	0.14	12.5	0.0	1.5	9.2	0.0	2.3	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(2	copies)
Peptidase_S78_2	PF14550.6	gi|227828843|ref|YP_002830623.1|	-	0.15	12.2	0.5	0.36	10.9	0.1	1.8	2	0	0	2	2	2	0	Putative	phage	serine	protease	XkdF
Ta0938	PF11494.8	gi|227828844|ref|YP_002830624.1|	-	3.3e-59	197.6	6.9	3.7e-59	197.5	6.9	1.0	1	0	0	1	1	1	1	Ta0938
AGT	PF11440.8	gi|227828844|ref|YP_002830624.1|	-	0.02	14.0	0.0	0.023	13.8	0.0	1.1	1	0	0	1	1	1	0	DNA	alpha-glucosyltransferase
HpuA	PF16960.5	gi|227828844|ref|YP_002830624.1|	-	0.15	11.2	1.9	0.36	9.9	0.1	1.9	1	1	1	2	2	2	0	Haemoglobin-haptoglobin	utilisation,	porphyrin	transporter
DUF35_N	PF12172.8	gi|227828845|ref|YP_002830625.1|	-	1.3e-06	28.1	2.0	3.8e-06	26.6	1.1	2.0	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|227828845|ref|YP_002830625.1|	-	0.013	15.5	1.5	0.015	15.3	0.9	1.5	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|227828845|ref|YP_002830625.1|	-	0.018	14.5	1.9	4.1	7.0	0.2	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|227828845|ref|YP_002830625.1|	-	0.054	13.2	0.2	0.054	13.2	0.2	2.4	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|227828845|ref|YP_002830625.1|	-	0.13	12.4	3.6	0.41	10.8	3.6	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
TFIIS_C	PF01096.18	gi|227828845|ref|YP_002830625.1|	-	0.42	10.5	4.8	2.9	7.8	0.9	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-C3HC4_3	PF13920.6	gi|227828845|ref|YP_002830625.1|	-	0.69	9.8	5.0	0.19	11.6	1.8	1.7	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Rubredoxin_2	PF18073.1	gi|227828845|ref|YP_002830625.1|	-	1.2	8.9	11.1	1	9.2	8.7	2.2	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-C2H2	PF00096.26	gi|227828845|ref|YP_002830625.1|	-	4	8.1	7.2	4.3	8.0	1.8	2.6	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Thiolase_N	PF00108.23	gi|227828846|ref|YP_002830626.1|	-	2.1e-25	89.5	0.0	4.9e-25	88.4	0.0	1.6	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227828846|ref|YP_002830626.1|	-	5.9e-05	22.7	0.6	0.00011	21.8	0.1	1.7	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.10	gi|227828846|ref|YP_002830626.1|	-	0.004	17.0	0.5	0.12	12.2	0.1	2.6	3	0	0	3	3	3	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Ribosomal_L28e	PF01778.17	gi|227828846|ref|YP_002830626.1|	-	0.14	13.0	0.0	9.3	7.0	0.0	2.4	2	0	0	2	2	2	0	Ribosomal	L28e	protein	family
GYD	PF08734.11	gi|227828847|ref|YP_002830627.1|	-	1.5e-25	89.0	0.1	1.7e-25	88.8	0.1	1.0	1	0	0	1	1	1	1	GYD	domain
AsnC_trans_reg	PF01037.21	gi|227828847|ref|YP_002830627.1|	-	0.00015	21.7	0.1	0.00026	20.9	0.1	1.4	1	1	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
DUF4208	PF13907.6	gi|227828847|ref|YP_002830627.1|	-	0.11	12.9	0.0	0.18	12.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4208)
Peptidase_M48	PF01435.18	gi|227828848|ref|YP_002830628.1|	-	2.5e-22	79.6	0.0	5.6e-22	78.5	0.0	1.6	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|227828848|ref|YP_002830628.1|	-	0.024	13.8	6.9	0.019	14.2	3.6	2.3	1	1	1	2	2	2	0	BlaR1	peptidase	M56
YbhQ	PF11076.8	gi|227828848|ref|YP_002830628.1|	-	0.06	13.4	6.6	0.39	10.7	1.0	2.2	2	0	0	2	2	2	0	Putative	inner	membrane	protein	YbhQ
SprT-like	PF10263.9	gi|227828848|ref|YP_002830628.1|	-	0.11	12.4	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
Pho88	PF10032.9	gi|227828848|ref|YP_002830628.1|	-	1.1	8.5	4.2	0.25	10.6	0.3	1.8	2	0	0	2	2	2	0	Phosphate	transport	(Pho88)
Peptidase_S9	PF00326.21	gi|227828849|ref|YP_002830629.1|	-	1.2e-48	165.4	0.0	1.6e-48	165.0	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|227828849|ref|YP_002830629.1|	-	1e-08	35.2	1.9	3.5e-06	26.9	1.5	2.4	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Peptidase_S15	PF02129.18	gi|227828849|ref|YP_002830629.1|	-	2.9e-07	30.3	0.2	0.00027	20.6	0.2	2.3	1	1	0	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Hydrolase_4	PF12146.8	gi|227828849|ref|YP_002830629.1|	-	2.8e-06	26.8	0.2	0.04	13.2	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DLH	PF01738.18	gi|227828849|ref|YP_002830629.1|	-	3.9e-06	26.6	0.1	2.7e-05	23.9	0.1	2.0	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|227828849|ref|YP_002830629.1|	-	0.00059	19.6	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_2	PF02230.16	gi|227828849|ref|YP_002830629.1|	-	0.0048	16.7	0.1	0.023	14.5	0.0	2.0	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
DUF2920	PF11144.8	gi|227828849|ref|YP_002830629.1|	-	0.032	13.4	0.2	0.9	8.6	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2920)
Abhydrolase_6	PF12697.7	gi|227828849|ref|YP_002830629.1|	-	0.059	14.0	0.0	0.089	13.4	0.0	1.3	1	0	0	1	1	1	0	Alpha/beta	hydrolase	family
PhoPQ_related	PF10142.9	gi|227828849|ref|YP_002830629.1|	-	0.068	11.8	0.0	0.099	11.3	0.0	1.2	1	0	0	1	1	1	0	PhoPQ-activated	pathogenicity-related	protein
Peptidase_S28	PF05577.12	gi|227828849|ref|YP_002830629.1|	-	0.082	11.7	0.0	0.16	10.8	0.0	1.4	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
CBS	PF00571.28	gi|227828850|ref|YP_002830630.1|	-	2.8e-22	78.9	3.6	2.2e-10	40.8	0.6	2.1	2	0	0	2	2	2	2	CBS	domain
Rad50_zn_hook	PF04423.14	gi|227828851|ref|YP_002830631.1|	-	0.0021	17.8	2.1	0.0027	17.5	0.0	2.2	3	0	0	3	3	3	1	Rad50	zinc	hook	motif
Anthrax_toxA	PF03497.16	gi|227828851|ref|YP_002830631.1|	-	0.11	12.6	0.8	0.15	12.2	0.8	1.2	1	0	0	1	1	1	0	Anthrax	toxin	LF	subunit
zf-C2H2_9	PF16293.5	gi|227828851|ref|YP_002830631.1|	-	0.38	10.6	2.5	4.4	7.2	0.2	2.5	2	1	0	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
Tropomodulin	PF03250.14	gi|227828851|ref|YP_002830631.1|	-	0.79	9.8	3.8	1.2	9.2	2.3	1.7	1	1	1	2	2	2	0	Tropomodulin
Pyr_redox_2	PF07992.14	gi|227828852|ref|YP_002830632.1|	-	1.7e-59	201.5	0.3	2.3e-59	201.0	0.3	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|227828852|ref|YP_002830632.1|	-	3.1e-29	101.5	0.2	5.7e-29	100.6	0.2	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|227828852|ref|YP_002830632.1|	-	1.3e-16	60.7	7.6	2.6e-15	56.5	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227828852|ref|YP_002830632.1|	-	1.1e-12	48.3	2.2	1.5e-12	47.9	0.0	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|227828852|ref|YP_002830632.1|	-	1.4e-10	40.8	10.7	6.1e-06	25.6	2.7	4.0	2	2	1	3	3	3	3	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|227828852|ref|YP_002830632.1|	-	2.7e-06	26.4	1.0	0.015	14.1	0.0	3.2	3	0	0	3	3	3	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|227828852|ref|YP_002830632.1|	-	0.0012	18.2	0.0	0.0051	16.2	0.0	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|227828852|ref|YP_002830632.1|	-	0.0025	17.0	5.4	0.56	9.2	0.0	2.6	2	1	0	2	2	2	2	FAD	binding	domain
K_oxygenase	PF13434.6	gi|227828852|ref|YP_002830632.1|	-	0.067	12.3	0.2	1	8.5	0.0	2.6	3	0	0	3	3	3	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|227828852|ref|YP_002830632.1|	-	0.099	12.6	0.9	2.1	8.3	0.0	3.2	4	0	0	4	4	4	0	FAD-NAD(P)-binding
zf-FCS	PF06467.14	gi|227828853|ref|YP_002830633.1|	-	1.2e-07	31.6	3.2	2.1e-07	30.8	3.2	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ta0938	PF11494.8	gi|227828853|ref|YP_002830633.1|	-	0.00022	21.4	0.5	0.00023	21.4	0.5	1.1	1	0	0	1	1	1	1	Ta0938
ATPase-cat_bd	PF12156.8	gi|227828853|ref|YP_002830633.1|	-	0.00046	20.9	3.8	0.00046	20.9	3.8	1.3	1	1	0	1	1	1	1	Putative	metal-binding	domain	of	cation	transport	ATPase
YHS	PF04945.13	gi|227828853|ref|YP_002830633.1|	-	0.00072	19.6	2.4	0.00098	19.2	2.4	1.2	1	0	0	1	1	1	1	YHS	domain
zinc_ribbon_2	PF13240.6	gi|227828853|ref|YP_002830633.1|	-	0.0026	17.4	4.6	0.01	15.5	0.2	2.4	2	0	0	2	2	2	1	zinc-ribbon	domain
Arc_trans_TRASH	PF08394.10	gi|227828853|ref|YP_002830633.1|	-	0.0053	17.1	4.8	0.0094	16.3	4.8	1.5	1	0	0	1	1	1	1	Archaeal	TRASH	domain
Zn_ribbon_recom	PF13408.6	gi|227828853|ref|YP_002830633.1|	-	0.035	14.6	4.6	0.041	14.4	4.6	1.2	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
MTTB	PF06253.11	gi|227828853|ref|YP_002830633.1|	-	0.11	10.4	0.0	0.12	10.4	0.0	1.0	1	0	0	1	1	1	0	Trimethylamine	methyltransferase	(MTTB)
HypA	PF01155.19	gi|227828853|ref|YP_002830633.1|	-	1.8	8.6	7.4	5.9	6.9	4.1	1.9	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
HTH_5	PF01022.20	gi|227828854|ref|YP_002830634.1|	-	1.5e-15	56.8	0.3	1.5e-15	56.8	0.3	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|227828854|ref|YP_002830634.1|	-	4.6e-09	36.2	0.0	1.4e-08	34.7	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|227828854|ref|YP_002830634.1|	-	2.7e-06	27.5	0.1	4.8e-06	26.7	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|227828854|ref|YP_002830634.1|	-	3.9e-06	26.7	0.0	1.3e-05	25.0	0.0	1.7	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|227828854|ref|YP_002830634.1|	-	1.1e-05	24.9	0.2	0.00018	21.0	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_9	PF08221.11	gi|227828854|ref|YP_002830634.1|	-	4.5e-05	23.5	0.3	0.008	16.2	0.2	2.2	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Rrf2	PF02082.20	gi|227828854|ref|YP_002830634.1|	-	0.0017	18.6	0.2	0.013	15.8	0.0	2.0	1	1	1	2	2	2	1	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|227828854|ref|YP_002830634.1|	-	0.0033	17.2	0.1	0.0071	16.2	0.1	1.5	1	1	0	1	1	1	1	TFIIE	alpha	subunit
MarR_2	PF12802.7	gi|227828854|ref|YP_002830634.1|	-	0.017	15.0	0.0	0.024	14.5	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF2551	PF10826.8	gi|227828854|ref|YP_002830634.1|	-	0.028	14.6	0.1	0.048	13.9	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2551)
Soyouz_module	PF14313.6	gi|227828854|ref|YP_002830634.1|	-	0.21	11.4	0.3	5.1	7.0	0.0	2.2	2	0	0	2	2	2	0	N-terminal	region	of	Paramyxovirinae	phosphoprotein	(P)
zf_UBZ	PF18439.1	gi|227828855|ref|YP_002830635.1|	-	0.038	13.6	0.1	0.058	13.0	0.1	1.3	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
MJ1316	PF04457.12	gi|227828856|ref|YP_002830636.1|	-	6.9e-15	55.5	1.0	7.5e-15	55.4	1.0	1.0	1	0	0	1	1	1	1	MJ1316	RNA	cyclic	group	end	recognition	domain
DMP12	PF16779.5	gi|227828856|ref|YP_002830636.1|	-	0.0057	16.6	0.9	0.0068	16.4	0.9	1.1	1	0	0	1	1	1	1	DNA-mimic	protein
ATP-cone	PF03477.16	gi|227828856|ref|YP_002830636.1|	-	0.06	13.9	0.2	0.063	13.9	0.2	1.2	1	0	0	1	1	1	0	ATP	cone	domain
zinc_ribbon_2	PF13240.6	gi|227828857|ref|YP_002830637.1|	-	8.7e-08	31.6	3.1	1.2e-07	31.2	3.1	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|227828857|ref|YP_002830637.1|	-	1.9e-05	24.5	0.8	2.8e-05	24.0	0.8	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|227828857|ref|YP_002830637.1|	-	0.0022	17.3	4.4	0.0034	16.7	4.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|227828857|ref|YP_002830637.1|	-	0.0041	16.4	0.3	0.0059	15.9	0.3	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
Nudix_N_2	PF14803.6	gi|227828857|ref|YP_002830637.1|	-	0.035	14.0	1.5	2.2	8.3	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_15	PF17032.5	gi|227828857|ref|YP_002830637.1|	-	0.2	12.4	2.5	0.38	11.5	2.5	1.4	1	0	0	1	1	1	0	zinc-ribbon	family
zn-ribbon_14	PF16503.5	gi|227828857|ref|YP_002830637.1|	-	1.7	8.3	3.5	17	5.0	0.2	2.3	2	0	0	2	2	2	0	Zinc-ribbon
DUF4191	PF13829.6	gi|227828857|ref|YP_002830637.1|	-	2.4	7.4	15.2	2.8	7.2	2.7	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4191)
zf_C2H2_10	PF18414.1	gi|227828857|ref|YP_002830637.1|	-	4.4	6.9	6.2	0.84	9.2	0.8	2.1	2	0	0	2	2	2	0	C2H2	type	zinc-finger
Rax2	PF12768.7	gi|227828857|ref|YP_002830637.1|	-	6.9	6.1	9.3	0.22	11.0	1.8	1.9	1	1	1	2	2	2	0	Cortical	protein	marker	for	cell	polarity
UPF0547	PF10571.9	gi|227828857|ref|YP_002830637.1|	-	7.7	6.7	6.3	65	3.7	6.3	2.1	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
T_Ag_DNA_bind	PF02217.16	gi|227828858|ref|YP_002830638.1|	-	0.013	16.1	0.7	0.013	16.1	0.7	1.7	2	0	0	2	2	2	0	Origin	of	replication	binding	protein
WH1	PF00568.23	gi|227828858|ref|YP_002830638.1|	-	0.06	13.3	2.7	0.069	13.1	1.9	1.6	1	1	0	1	1	1	0	WH1	domain
Pilin_N	PF07790.11	gi|227828858|ref|YP_002830638.1|	-	0.55	11.2	6.7	0.82	10.6	6.3	1.8	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
PspB	PF06667.12	gi|227828859|ref|YP_002830639.1|	-	0.14	12.2	0.2	0.22	11.6	0.2	1.4	1	0	0	1	1	1	0	Phage	shock	protein	B
Cu-oxidase	PF00394.22	gi|227828860|ref|YP_002830640.1|	-	0.00083	19.5	0.9	0.00083	19.5	0.9	1.4	2	0	0	2	2	2	1	Multicopper	oxidase
DUF4981	PF16353.5	gi|227828860|ref|YP_002830640.1|	-	0.0028	18.1	0.0	0.004	17.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function(DUF4981)
FGGY_C	PF02782.16	gi|227828860|ref|YP_002830640.1|	-	0.012	15.3	0.1	0.016	14.9	0.1	1.2	1	0	0	1	1	1	0	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
Cadherin-like	PF12733.7	gi|227828860|ref|YP_002830640.1|	-	0.075	13.6	1.2	0.12	12.9	1.2	1.2	1	0	0	1	1	1	0	Cadherin-like	beta	sandwich	domain
T2SSE	PF00437.20	gi|227828861|ref|YP_002830641.1|	-	1.5e-38	132.4	0.0	2.1e-38	131.9	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_15	PF13175.6	gi|227828861|ref|YP_002830641.1|	-	0.00015	21.6	1.6	0.00071	19.4	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|227828861|ref|YP_002830641.1|	-	0.00073	19.4	1.2	0.0011	18.8	0.0	1.9	3	0	0	3	3	3	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|227828861|ref|YP_002830641.1|	-	0.0009	19.5	0.0	0.0021	18.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227828861|ref|YP_002830641.1|	-	0.001	18.8	0.0	0.0021	17.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|227828861|ref|YP_002830641.1|	-	0.0019	18.7	0.0	0.0089	16.5	0.0	2.1	3	0	0	3	3	2	1	ABC	transporter
AAA_23	PF13476.6	gi|227828861|ref|YP_002830641.1|	-	0.013	16.0	2.8	0.037	14.5	2.8	1.9	1	1	0	1	1	1	0	AAA	domain
DUF3987	PF13148.6	gi|227828861|ref|YP_002830641.1|	-	0.034	13.2	0.0	0.056	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
FtsK_SpoIIIE	PF01580.18	gi|227828861|ref|YP_002830641.1|	-	0.051	12.9	0.1	0.11	11.8	0.1	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_30	PF13604.6	gi|227828861|ref|YP_002830641.1|	-	0.053	13.2	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Pox_A32	PF04665.12	gi|227828861|ref|YP_002830641.1|	-	0.067	12.6	0.8	0.69	9.3	0.1	2.3	2	0	0	2	2	2	0	Poxvirus	A32	protein
cobW	PF02492.19	gi|227828861|ref|YP_002830641.1|	-	0.072	12.7	1.2	0.13	11.8	0.2	1.9	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
SMC_N	PF02463.19	gi|227828861|ref|YP_002830641.1|	-	0.079	12.4	0.0	0.16	11.4	0.0	1.5	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_7	PF12775.7	gi|227828861|ref|YP_002830641.1|	-	0.081	12.4	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_33	PF13671.6	gi|227828861|ref|YP_002830641.1|	-	0.14	12.3	0.0	0.22	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|227828861|ref|YP_002830641.1|	-	0.16	12.3	0.0	0.3	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
SRP54	PF00448.22	gi|227828861|ref|YP_002830641.1|	-	0.19	11.4	0.3	0.65	9.6	0.1	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
TrwB_AAD_bind	PF10412.9	gi|227828861|ref|YP_002830641.1|	-	0.2	10.5	0.0	0.35	9.7	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T2SSF	PF00482.23	gi|227828862|ref|YP_002830642.1|	-	1.1e-16	60.9	0.7	5.2e-10	39.3	0.0	4.3	4	1	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
RuvB_C	PF05491.13	gi|227828865|ref|YP_002830645.1|	-	0.065	13.1	0.0	0.16	11.9	0.0	1.6	2	0	0	2	2	2	0	RuvB	C-terminal	winged	helix	domain
Peptidase_M1	PF01433.20	gi|227828866|ref|YP_002830646.1|	-	1.9e-81	272.8	1.1	1.9e-81	272.8	1.1	1.7	2	0	0	2	2	2	1	Peptidase	family	M1	domain
ERAP1_C	PF11838.8	gi|227828866|ref|YP_002830646.1|	-	1.9e-37	129.5	0.1	3.7e-37	128.6	0.1	1.5	1	0	0	1	1	1	1	ERAP1-like	C-terminal	domain
Peptidase_M1_N	PF17900.1	gi|227828866|ref|YP_002830646.1|	-	9e-33	114.0	0.0	2.1e-32	112.9	0.0	1.6	1	0	0	1	1	1	1	Peptidase	M1	N-terminal	domain
Aminopep	PF10023.9	gi|227828866|ref|YP_002830646.1|	-	0.054	12.8	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	Putative	aminopeptidase
DUF608	PF04685.13	gi|227828867|ref|YP_002830647.1|	-	2.7e-80	270.3	1.0	6.3e-79	265.7	1.0	2.1	1	1	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydr_116N	PF12215.8	gi|227828867|ref|YP_002830647.1|	-	2.8e-05	23.7	3.0	0.0026	17.3	3.0	3.1	1	1	0	1	1	1	1	beta-glucosidase	2,	glycosyl-hydrolase	family	116	N-term
Bac_rhamnosid6H	PF17389.2	gi|227828867|ref|YP_002830647.1|	-	0.00015	21.1	0.1	0.00024	20.5	0.1	1.2	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Amidohydro_1	PF01979.20	gi|227828868|ref|YP_002830648.1|	-	8.1e-22	78.0	0.1	1.2e-21	77.4	0.1	1.2	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|227828868|ref|YP_002830648.1|	-	4.4e-12	46.2	0.0	3.3e-06	26.8	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
ABC_tran	PF00005.27	gi|227828869|ref|YP_002830649.1|	-	4e-30	105.1	0.0	6e-30	104.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828869|ref|YP_002830649.1|	-	4.3e-14	52.8	0.0	8.3e-14	51.9	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|227828869|ref|YP_002830649.1|	-	0.0024	18.1	0.9	0.041	14.2	0.9	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|227828869|ref|YP_002830649.1|	-	0.0031	17.9	0.0	0.005	17.2	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|227828869|ref|YP_002830649.1|	-	0.021	14.7	0.1	0.036	14.0	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|227828869|ref|YP_002830649.1|	-	0.054	13.2	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|227828869|ref|YP_002830649.1|	-	0.15	12.5	0.0	11	6.5	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|227828869|ref|YP_002830649.1|	-	0.19	11.9	0.0	3.6	7.7	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|227828869|ref|YP_002830649.1|	-	0.24	11.1	0.0	0.39	10.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|227828869|ref|YP_002830649.1|	-	0.26	9.9	0.1	1.9	7.1	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|227828870|ref|YP_002830650.1|	-	1.9e-28	99.7	0.0	3e-28	99.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828870|ref|YP_002830650.1|	-	5.4e-14	52.5	0.1	9.2e-14	51.7	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227828870|ref|YP_002830650.1|	-	2e-11	44.3	2.8	3.3e-06	27.1	0.2	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828870|ref|YP_002830650.1|	-	1.7e-07	30.9	1.9	0.00033	20.2	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227828870|ref|YP_002830650.1|	-	1.8e-05	24.4	0.0	3.5e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|227828870|ref|YP_002830650.1|	-	0.00012	22.5	0.0	0.00015	22.2	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|227828870|ref|YP_002830650.1|	-	0.0024	18.1	0.6	0.12	12.7	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|227828870|ref|YP_002830650.1|	-	0.0036	17.2	0.2	0.0086	16.0	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
TniB	PF05621.11	gi|227828870|ref|YP_002830650.1|	-	0.0056	16.1	1.1	0.17	11.3	0.5	2.2	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_23	PF13476.6	gi|227828870|ref|YP_002830650.1|	-	0.0085	16.6	0.0	0.017	15.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|227828870|ref|YP_002830650.1|	-	0.01	14.8	0.2	0.017	14.1	0.2	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
MMR_HSR1	PF01926.23	gi|227828870|ref|YP_002830650.1|	-	0.011	15.8	0.3	0.026	14.6	0.3	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ABC_ATPase	PF09818.9	gi|227828870|ref|YP_002830650.1|	-	0.016	14.0	1.6	2.5	6.8	0.1	2.4	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
IstB_IS21	PF01695.17	gi|227828870|ref|YP_002830650.1|	-	0.023	14.4	0.1	0.13	11.9	0.0	1.9	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF87	PF01935.17	gi|227828870|ref|YP_002830650.1|	-	0.027	14.6	0.6	0.07	13.2	0.3	1.8	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
PIF1	PF05970.14	gi|227828870|ref|YP_002830650.1|	-	0.03	13.5	0.2	0.073	12.2	0.0	1.7	2	0	0	2	2	2	0	PIF1-like	helicase
AAA_15	PF13175.6	gi|227828870|ref|YP_002830650.1|	-	0.045	13.4	0.3	2.5	7.7	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
NACHT	PF05729.12	gi|227828870|ref|YP_002830650.1|	-	0.063	13.2	0.0	0.15	12.0	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
MobB	PF03205.14	gi|227828870|ref|YP_002830650.1|	-	0.068	13.1	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.6	gi|227828870|ref|YP_002830650.1|	-	0.076	12.7	0.2	0.17	11.6	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|227828870|ref|YP_002830650.1|	-	0.082	13.3	0.1	1.4	9.4	0.1	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|227828870|ref|YP_002830650.1|	-	0.09	12.7	0.4	0.19	11.6	0.1	1.6	2	0	0	2	2	1	0	NTPase
NB-ARC	PF00931.22	gi|227828870|ref|YP_002830650.1|	-	0.09	11.9	0.0	0.16	11.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_7	PF12775.7	gi|227828870|ref|YP_002830650.1|	-	0.13	11.8	0.0	0.29	10.6	0.0	1.6	2	0	0	2	2	1	0	P-loop	containing	dynein	motor	region
SAM_4	PF18017.1	gi|227828870|ref|YP_002830650.1|	-	0.19	11.7	0.4	0.41	10.7	0.4	1.5	1	0	0	1	1	1	0	SAM	domain	(Sterile	alpha	motif)
GCD14	PF08704.10	gi|227828870|ref|YP_002830650.1|	-	0.2	11.3	0.1	0.32	10.6	0.1	1.2	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
AAA_19	PF13245.6	gi|227828870|ref|YP_002830650.1|	-	0.37	11.1	1.0	2.5	8.4	1.0	2.1	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|227828871|ref|YP_002830651.1|	-	2.2e-22	79.7	16.6	2.2e-22	79.7	16.6	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|227828871|ref|YP_002830651.1|	-	7.9e-05	22.5	0.2	7.9e-05	22.5	0.2	3.4	4	1	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
UPF0126	PF03458.13	gi|227828871|ref|YP_002830651.1|	-	0.36	10.7	9.8	0.038	13.9	4.5	2.2	2	0	0	2	2	2	0	UPF0126	domain
TRAM_LAG1_CLN8	PF03798.16	gi|227828871|ref|YP_002830651.1|	-	0.41	10.4	8.0	0.059	13.1	3.5	1.8	2	0	0	2	2	2	0	TLC	domain
SBP_bac_5	PF00496.22	gi|227828872|ref|YP_002830652.1|	-	3e-38	131.8	6.3	5.4e-38	130.9	6.3	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
DUF5305	PF17231.2	gi|227828872|ref|YP_002830652.1|	-	0.012	15.0	13.5	0.02	14.3	13.5	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
Stevor	PF17410.2	gi|227828872|ref|YP_002830652.1|	-	0.14	11.6	9.4	0.25	10.8	9.4	1.4	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
RIFIN	PF02009.16	gi|227828872|ref|YP_002830652.1|	-	0.19	11.6	11.4	0.32	10.8	11.4	1.3	1	0	0	1	1	1	0	Rifin
TMEM154	PF15102.6	gi|227828872|ref|YP_002830652.1|	-	0.43	10.5	15.9	1	9.3	15.9	1.6	1	0	0	1	1	1	0	TMEM154	protein	family
MGC-24	PF05283.11	gi|227828872|ref|YP_002830652.1|	-	1.1	9.7	10.1	2.1	8.8	10.1	1.4	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
BPD_transp_1	PF00528.22	gi|227828873|ref|YP_002830653.1|	-	1.2e-34	119.7	12.9	1.2e-34	119.7	12.9	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2897	PF11446.8	gi|227828873|ref|YP_002830653.1|	-	1.2	9.0	6.6	0.32	10.9	0.9	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2897)
DUF1894	PF08979.11	gi|227828875|ref|YP_002830655.1|	-	0.12	12.8	0.6	0.29	11.5	0.1	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1894)
MR_MLE_C	PF13378.6	gi|227828876|ref|YP_002830656.1|	-	4.1e-57	193.3	0.0	5.5e-57	192.9	0.0	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|227828876|ref|YP_002830656.1|	-	5.8e-14	52.3	0.0	1.4e-13	51.0	0.0	1.6	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
adh_short_C2	PF13561.6	gi|227828877|ref|YP_002830657.1|	-	8.3e-43	146.6	0.0	1.1e-42	146.2	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|227828877|ref|YP_002830657.1|	-	1.6e-41	141.9	0.0	2.2e-41	141.4	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|227828877|ref|YP_002830657.1|	-	0.00031	20.7	0.1	0.0014	18.6	0.1	1.9	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|227828877|ref|YP_002830657.1|	-	0.0028	17.2	0.0	0.0074	15.8	0.0	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Pyr_redox	PF00070.27	gi|227828877|ref|YP_002830657.1|	-	0.12	13.0	0.2	0.32	11.6	0.2	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF5614	PF18474.1	gi|227828877|ref|YP_002830657.1|	-	0.17	11.2	0.0	0.25	10.6	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5614)
2-Hacid_dh_C	PF02826.19	gi|227828877|ref|YP_002830657.1|	-	0.23	10.8	0.5	0.42	9.9	0.1	1.7	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF1404	PF07185.11	gi|227828878|ref|YP_002830658.1|	-	3.4e-65	218.9	19.9	4.7e-65	218.4	19.9	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
Rieske	PF00355.26	gi|227828881|ref|YP_002830661.1|	-	1.8e-09	37.4	0.1	5.7e-09	35.8	0.1	1.7	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
COX1	PF00115.20	gi|227828883|ref|YP_002830663.1|	-	1.5e-77	261.3	64.5	1.8e-77	261.0	64.5	1.1	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Cytochrom_B_N_2	PF13631.6	gi|227828884|ref|YP_002830664.1|	-	1.5e-57	194.3	2.7	1.5e-57	194.3	2.7	4.2	4	1	1	5	5	5	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|227828884|ref|YP_002830664.1|	-	1.7e-24	86.7	11.0	1.7e-24	86.7	11.0	2.2	2	0	0	2	2	2	1	Cytochrome	b/b6/petB
Cytochrom_B_C	PF00032.17	gi|227828884|ref|YP_002830664.1|	-	0.001	19.4	1.8	0.001	19.4	1.8	3.5	3	1	0	3	3	3	1	Cytochrome	b(C-terminal)/b6/petD
Doppel	PF11466.8	gi|227828886|ref|YP_002830666.1|	-	0.31	10.7	3.0	13	5.5	0.1	2.5	2	1	0	2	2	2	0	Prion-like	protein	Doppel
Syndecan	PF01034.20	gi|227828886|ref|YP_002830666.1|	-	5.1	7.1	6.0	16	5.5	0.9	2.1	2	0	0	2	2	2	0	Syndecan	domain
DUF2207	PF09972.9	gi|227828886|ref|YP_002830666.1|	-	6.8	5.3	7.5	7.5	5.2	7.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
PAP2	PF01569.21	gi|227828887|ref|YP_002830667.1|	-	1e-23	83.6	3.0	1e-23	83.6	3.0	2.0	3	0	0	3	3	3	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|227828887|ref|YP_002830667.1|	-	0.099	12.3	16.9	0.032	13.9	12.2	2.3	2	1	0	2	2	2	0	PAP2	superfamily
Arc_trans_TRASH	PF08394.10	gi|227828888|ref|YP_002830668.1|	-	2.1e-18	66.3	9.5	4.1e-18	65.4	9.5	1.5	1	0	0	1	1	1	1	Archaeal	TRASH	domain
HTH_24	PF13412.6	gi|227828888|ref|YP_002830668.1|	-	2.9e-12	45.9	1.2	4.6e-12	45.3	1.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|227828888|ref|YP_002830668.1|	-	6.5e-10	38.8	0.2	1e-09	38.2	0.2	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|227828888|ref|YP_002830668.1|	-	1.4e-08	34.5	0.3	2e-08	34.0	0.3	1.3	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|227828888|ref|YP_002830668.1|	-	2e-07	30.8	0.4	4.5e-07	29.7	0.4	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|227828888|ref|YP_002830668.1|	-	4.9e-07	29.5	1.2	7.7e-07	28.8	1.2	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|227828888|ref|YP_002830668.1|	-	7.9e-07	28.8	0.3	1.3e-06	28.1	0.3	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|227828888|ref|YP_002830668.1|	-	2.8e-06	27.1	0.0	5.7e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|227828888|ref|YP_002830668.1|	-	3.3e-05	24.0	0.0	5.9e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|227828888|ref|YP_002830668.1|	-	5e-05	23.0	0.7	7.6e-05	22.4	0.1	1.5	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|227828888|ref|YP_002830668.1|	-	6.6e-05	22.8	0.2	0.00012	22.0	0.2	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Mga	PF05043.13	gi|227828888|ref|YP_002830668.1|	-	0.00012	22.6	0.2	0.00031	21.3	0.2	1.7	1	1	0	1	1	1	1	Mga	helix-turn-helix	domain
HTH_17	PF12728.7	gi|227828888|ref|YP_002830668.1|	-	0.00023	21.3	0.1	0.01	16.0	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|227828888|ref|YP_002830668.1|	-	0.00033	20.4	1.2	0.0005	19.8	0.2	1.8	2	0	0	2	2	1	1	HTH	DNA	binding	domain
HTH_3	PF01381.22	gi|227828888|ref|YP_002830668.1|	-	0.00038	20.4	0.5	0.00077	19.5	0.2	1.6	2	0	0	2	2	1	1	Helix-turn-helix
HTH_26	PF13443.6	gi|227828888|ref|YP_002830668.1|	-	0.00046	20.6	0.4	0.0011	19.3	0.2	1.7	2	0	0	2	2	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|227828888|ref|YP_002830668.1|	-	0.00047	19.9	0.4	0.00083	19.1	0.4	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|227828888|ref|YP_002830668.1|	-	0.00082	19.7	0.1	0.0014	18.9	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_6	PF01418.17	gi|227828888|ref|YP_002830668.1|	-	0.00093	19.1	0.0	0.0017	18.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
HTH_31	PF13560.6	gi|227828888|ref|YP_002830668.1|	-	0.0012	19.1	1.2	0.002	18.4	1.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|227828888|ref|YP_002830668.1|	-	0.0021	17.7	0.3	0.0036	16.9	0.3	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Mga	PF08280.11	gi|227828888|ref|YP_002830668.1|	-	0.0028	17.7	0.2	0.007	16.4	0.2	1.7	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
CENP-B_N	PF04218.13	gi|227828888|ref|YP_002830668.1|	-	0.0044	16.6	0.1	0.012	15.2	0.1	1.7	1	0	0	1	1	1	1	CENP-B	N-terminal	DNA-binding	domain
HTH_36	PF13730.6	gi|227828888|ref|YP_002830668.1|	-	0.0058	16.6	0.2	0.011	15.6	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
FeoC	PF09012.10	gi|227828888|ref|YP_002830668.1|	-	0.0082	16.2	0.0	0.0082	16.2	0.0	2.2	3	0	0	3	3	1	1	FeoC	like	transcriptional	regulator
HTH_29	PF13551.6	gi|227828888|ref|YP_002830668.1|	-	0.0086	16.1	0.1	0.014	15.4	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_5	PF01022.20	gi|227828888|ref|YP_002830668.1|	-	0.011	15.5	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_7	PF02796.15	gi|227828888|ref|YP_002830668.1|	-	0.013	15.5	0.1	0.013	15.5	0.1	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain	of	resolvase
HTH_28	PF13518.6	gi|227828888|ref|YP_002830668.1|	-	0.013	15.6	0.3	0.029	14.5	0.1	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|227828888|ref|YP_002830668.1|	-	0.017	15.1	0.1	0.029	14.4	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
zf-FCS	PF06467.14	gi|227828888|ref|YP_002830668.1|	-	0.022	14.7	3.2	0.059	13.3	3.2	1.7	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
NUMOD1	PF07453.13	gi|227828888|ref|YP_002830668.1|	-	0.023	15.0	0.1	0.063	13.6	0.1	1.8	1	0	0	1	1	1	0	NUMOD1	domain
FtsK_gamma	PF09397.10	gi|227828888|ref|YP_002830668.1|	-	0.025	14.4	0.1	0.041	13.7	0.1	1.3	1	0	0	1	1	1	0	Ftsk	gamma	domain
Ribosomal_S25	PF03297.15	gi|227828888|ref|YP_002830668.1|	-	0.025	14.8	0.1	0.046	13.9	0.1	1.4	1	0	0	1	1	1	0	S25	ribosomal	protein
HTH_37	PF13744.6	gi|227828888|ref|YP_002830668.1|	-	0.025	14.5	0.1	0.045	13.7	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|227828888|ref|YP_002830668.1|	-	0.032	14.7	0.1	0.052	14.1	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sigma70_r4	PF04545.16	gi|227828888|ref|YP_002830668.1|	-	0.035	13.6	0.9	0.097	12.2	0.9	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
DUF5402	PF17393.2	gi|227828888|ref|YP_002830668.1|	-	0.041	13.8	1.2	0.2	11.6	0.1	2.3	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5402)
HTH_38	PF13936.6	gi|227828888|ref|YP_002830668.1|	-	0.044	13.6	1.0	0.078	12.7	1.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
ANT	PF03374.14	gi|227828888|ref|YP_002830668.1|	-	0.052	13.9	0.0	0.082	13.2	0.0	1.3	1	0	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
HTH_AraC	PF00165.23	gi|227828888|ref|YP_002830668.1|	-	0.07	13.3	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
Penicillinase_R	PF03965.16	gi|227828888|ref|YP_002830668.1|	-	0.073	13.4	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_Tnp_ISL3	PF13542.6	gi|227828888|ref|YP_002830668.1|	-	0.085	12.3	0.2	0.12	11.8	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
IF2_N	PF04760.15	gi|227828888|ref|YP_002830668.1|	-	0.11	12.3	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Translation	initiation	factor	IF-2,	N-terminal	region
Put_DNA-bind_N	PF06971.13	gi|227828888|ref|YP_002830668.1|	-	0.11	12.5	0.5	1	9.4	0.2	2.4	1	1	1	2	2	2	0	Putative	DNA-binding	protein	N-terminus
Thump_like	PF18096.1	gi|227828888|ref|YP_002830668.1|	-	0.12	12.4	0.2	0.23	11.4	0.2	1.5	1	0	0	1	1	1	0	THUMP	domain-like
HTH_Tnp_Tc3_2	PF01498.18	gi|227828888|ref|YP_002830668.1|	-	0.14	12.5	0.8	1.9	8.8	0.5	2.1	2	0	0	2	2	2	0	Transposase
HTH_8	PF02954.19	gi|227828888|ref|YP_002830668.1|	-	0.15	11.9	0.3	0.35	10.7	0.3	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
Crp	PF00325.20	gi|227828888|ref|YP_002830668.1|	-	0.16	11.6	0.6	0.38	10.5	0.6	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
LexA_DNA_bind	PF01726.16	gi|227828888|ref|YP_002830668.1|	-	0.17	11.7	0.3	0.36	10.6	0.3	1.6	1	1	0	1	1	1	0	LexA	DNA	binding	domain
SNAD4	PF18750.1	gi|227828888|ref|YP_002830668.1|	-	0.3	11.2	1.5	3.2	7.9	0.1	2.2	2	0	0	2	2	2	0	Secreted	Novel	AID/APOBEC-like	Deaminase	4
HTH_25	PF13413.6	gi|227828888|ref|YP_002830668.1|	-	0.55	10.1	2.1	1.4	8.8	0.7	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
YHS	PF04945.13	gi|227828889|ref|YP_002830669.1|	-	2.7e-20	72.2	1.7	3.1e-20	72.0	1.7	1.0	1	0	0	1	1	1	1	YHS	domain
zf-FCS	PF06467.14	gi|227828889|ref|YP_002830669.1|	-	1.3e-05	25.0	1.2	2.2e-05	24.3	1.2	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.10	gi|227828889|ref|YP_002830669.1|	-	9.8e-05	22.6	2.7	0.00014	22.1	2.7	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
FAP206	PF12018.8	gi|227828889|ref|YP_002830669.1|	-	0.0024	17.4	0.0	0.0025	17.4	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function
NosL	PF05573.12	gi|227828889|ref|YP_002830669.1|	-	0.087	13.2	0.1	0.1	13.0	0.1	1.1	1	0	0	1	1	1	0	NosL
E1-E2_ATPase	PF00122.20	gi|227828890|ref|YP_002830670.1|	-	5.2e-48	163.0	0.2	1.2e-47	161.8	0.2	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|227828890|ref|YP_002830670.1|	-	2.5e-35	122.7	0.4	5.6e-35	121.5	0.4	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|227828890|ref|YP_002830670.1|	-	8.7e-20	70.9	10.3	2.9e-15	56.5	1.9	3.5	3	0	0	3	3	3	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|227828890|ref|YP_002830670.1|	-	1.5e-11	44.6	1.6	1e-05	25.4	0.6	2.4	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|227828890|ref|YP_002830670.1|	-	0.0038	17.7	0.0	0.014	15.9	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|227828890|ref|YP_002830670.1|	-	0.0048	17.0	1.3	0.067	13.3	0.2	2.8	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Peptidase_S8	PF00082.22	gi|227828890|ref|YP_002830670.1|	-	0.16	11.2	0.1	0.44	9.7	0.1	1.7	2	0	0	2	2	2	0	Subtilase	family
zf-Di19	PF05605.12	gi|227828891|ref|YP_002830671.1|	-	0.008	16.5	0.0	0.013	15.8	0.0	1.3	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
ABC_tran	PF00005.27	gi|227828892|ref|YP_002830672.1|	-	4.4e-28	98.5	0.0	6.8e-28	97.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828892|ref|YP_002830672.1|	-	3.5e-15	56.6	0.6	9.4e-09	35.5	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|227828892|ref|YP_002830672.1|	-	4.7e-05	23.3	0.0	0.0097	15.7	0.0	3.0	1	1	2	3	3	3	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|227828892|ref|YP_002830672.1|	-	8.1e-05	22.3	0.1	0.00015	21.4	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|227828892|ref|YP_002830672.1|	-	0.00013	22.0	0.0	0.00019	21.4	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|227828892|ref|YP_002830672.1|	-	0.0013	19.0	0.3	0.015	15.6	0.2	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|227828892|ref|YP_002830672.1|	-	0.0054	17.1	0.0	0.0086	16.5	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|227828892|ref|YP_002830672.1|	-	0.0072	16.1	0.0	0.013	15.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|227828892|ref|YP_002830672.1|	-	0.011	15.2	0.0	0.28	10.6	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|227828892|ref|YP_002830672.1|	-	0.012	16.2	2.1	0.025	15.1	2.2	1.9	1	1	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|227828892|ref|YP_002830672.1|	-	0.057	13.2	0.2	0.16	11.8	0.1	1.7	2	0	0	2	2	2	0	MukB	N-terminal
AAA_24	PF13479.6	gi|227828892|ref|YP_002830672.1|	-	0.064	13.0	0.4	0.13	12.0	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|227828892|ref|YP_002830672.1|	-	0.074	13.6	0.0	0.17	12.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|227828892|ref|YP_002830672.1|	-	0.086	12.7	0.5	0.15	12.0	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
NTPase_1	PF03266.15	gi|227828892|ref|YP_002830672.1|	-	0.097	12.6	1.2	3.3	7.6	0.1	2.6	2	1	1	3	3	3	0	NTPase
AAA	PF00004.29	gi|227828892|ref|YP_002830672.1|	-	0.11	13.0	0.2	0.34	11.3	0.2	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.22	gi|227828892|ref|YP_002830672.1|	-	0.13	11.9	0.1	0.27	10.8	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
IstB_IS21	PF01695.17	gi|227828892|ref|YP_002830672.1|	-	0.17	11.6	0.0	0.91	9.2	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ABC2_membrane	PF01061.24	gi|227828893|ref|YP_002830673.1|	-	1.6e-14	53.8	27.3	1.6e-14	53.8	27.3	1.8	2	1	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|227828893|ref|YP_002830673.1|	-	2.4e-09	36.7	31.6	2.5e-09	36.7	31.1	1.2	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
Romo1	PF10247.9	gi|227828893|ref|YP_002830673.1|	-	0.035	14.5	3.5	0.053	13.9	0.2	2.5	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
LapA_dom	PF06305.11	gi|227828893|ref|YP_002830673.1|	-	0.35	10.7	4.2	3.6	7.5	2.7	2.9	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
DUF4898	PF16239.5	gi|227828894|ref|YP_002830674.1|	-	5e-27	93.7	3.1	7.8e-27	93.0	3.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4898)
DUF3501	PF12007.8	gi|227828895|ref|YP_002830675.1|	-	6.1e-58	195.9	0.3	6.8e-58	195.7	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3501)
Peptidase_U32_C	PF16325.5	gi|227828895|ref|YP_002830675.1|	-	0.068	13.5	0.1	0.24	11.7	0.1	1.8	2	0	0	2	2	2	0	Peptidase	family	U32	C-terminal	domain
CCG	PF02754.16	gi|227828896|ref|YP_002830676.1|	-	2.5e-18	66.0	0.0	1.4e-10	41.3	0.0	2.8	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_7	PF12838.7	gi|227828896|ref|YP_002830676.1|	-	0.00012	22.5	6.5	0.0003	21.3	6.5	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828896|ref|YP_002830676.1|	-	0.0012	19.0	5.0	0.0036	17.4	5.1	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|227828896|ref|YP_002830676.1|	-	0.0069	16.9	10.1	0.054	14.0	10.2	2.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227828896|ref|YP_002830676.1|	-	0.0084	16.5	11.8	0.088	13.3	12.0	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|227828896|ref|YP_002830676.1|	-	0.016	15.7	1.8	0.016	15.7	1.8	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|227828896|ref|YP_002830676.1|	-	0.021	14.9	8.1	0.11	12.6	8.4	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|227828896|ref|YP_002830676.1|	-	0.038	13.8	11.9	0.65	9.9	3.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|227828896|ref|YP_002830676.1|	-	0.2	11.8	12.5	0.43	10.8	2.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|227828896|ref|YP_002830676.1|	-	0.34	11.9	5.3	4.5	8.3	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|227828896|ref|YP_002830676.1|	-	1.3	9.2	12.8	8.8	6.6	2.1	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828896|ref|YP_002830676.1|	-	1.5	9.1	10.0	0.26	11.4	1.2	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Rubrerythrin	PF02915.17	gi|227828897|ref|YP_002830677.1|	-	1.5e-26	93.4	0.7	2.5e-26	92.7	0.7	1.3	1	1	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|227828897|ref|YP_002830677.1|	-	1e-11	44.9	0.1	0.00013	21.9	0.2	2.0	1	1	1	2	2	2	2	Ferritin-like	domain
DUF892	PF05974.12	gi|227828897|ref|YP_002830677.1|	-	0.033	14.2	1.0	0.25	11.3	0.2	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF892)
Ferritin_2	PF13668.6	gi|227828897|ref|YP_002830677.1|	-	0.068	13.4	0.1	0.26	11.5	0.1	1.8	1	1	1	2	2	2	0	Ferritin-like	domain
COQ7	PF03232.13	gi|227828897|ref|YP_002830677.1|	-	0.093	12.5	0.5	1.4	8.6	0.1	2.0	2	0	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
DUF2173	PF09941.9	gi|227828898|ref|YP_002830678.1|	-	0.00026	21.3	0.0	0.0017	18.7	0.0	2.0	1	1	1	2	2	2	1	Uncharacterized	conserved	protein	(DUF2173)
OppC_N	PF12911.7	gi|227828898|ref|YP_002830678.1|	-	0.016	15.1	0.2	0.016	15.1	0.2	2.1	2	1	1	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF2207	PF09972.9	gi|227828898|ref|YP_002830678.1|	-	0.024	13.4	1.8	0.027	13.2	1.8	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF373	PF04123.13	gi|227828898|ref|YP_002830678.1|	-	2.6	7.4	7.1	3.7	6.9	7.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
Deltameth_res	PF16020.5	gi|227828898|ref|YP_002830678.1|	-	8.6	6.3	7.8	6.3	6.8	2.6	2.4	2	0	0	2	2	2	0	Deltamethrin	resistance
DUF2173	PF09941.9	gi|227828899|ref|YP_002830679.1|	-	4.9e-07	30.0	0.0	7.5e-07	29.4	0.0	1.3	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
Phage_sheath_1C	PF17482.2	gi|227828899|ref|YP_002830679.1|	-	0.03	14.3	0.4	0.31	11.0	0.1	2.0	1	1	1	2	2	2	0	Phage	tail	sheath	C-terminal	domain
Ald_Xan_dh_C2	PF02738.18	gi|227828900|ref|YP_002830680.1|	-	4.8e-160	533.6	0.1	5.6e-160	533.4	0.1	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227828900|ref|YP_002830680.1|	-	4.9e-23	81.6	0.0	1.4e-22	80.2	0.0	1.8	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Lipoprot_C	PF08794.10	gi|227828900|ref|YP_002830680.1|	-	0.071	13.1	0.2	0.17	11.9	0.1	1.7	2	0	0	2	2	2	0	Lipoprotein	GNA1870	C	terminal	like
Fer2_2	PF01799.20	gi|227828901|ref|YP_002830681.1|	-	6.5e-31	106.2	1.5	9e-31	105.7	0.0	1.8	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|227828901|ref|YP_002830681.1|	-	0.00012	21.9	2.2	0.00014	21.7	0.2	2.0	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|227828901|ref|YP_002830681.1|	-	0.00071	19.6	1.1	0.00071	19.6	1.1	1.5	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
FAD_binding_5	PF00941.21	gi|227828902|ref|YP_002830682.1|	-	2.2e-49	167.5	0.0	3.3e-49	166.9	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|227828902|ref|YP_002830682.1|	-	4.4e-27	94.3	0.0	1.4e-26	92.6	0.0	1.8	2	0	0	2	2	2	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
DUF4108	PF13390.6	gi|227828902|ref|YP_002830682.1|	-	0.025	14.5	0.0	0.045	13.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4108)
AIRS_C	PF02769.22	gi|227828903|ref|YP_002830683.1|	-	2.1e-05	24.7	0.0	4.5e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
Rhodanese	PF00581.20	gi|227828904|ref|YP_002830684.1|	-	2.5e-10	40.8	0.0	3.4e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	Rhodanese-like	domain
HTH_24	PF13412.6	gi|227828905|ref|YP_002830685.1|	-	2.8e-05	23.6	0.2	3.5e-05	23.3	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|227828905|ref|YP_002830685.1|	-	7.7e-05	22.5	0.3	8.5e-05	22.4	0.3	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
RNA_pol_Rpc34	PF05158.12	gi|227828905|ref|YP_002830685.1|	-	0.00025	20.5	0.1	0.00028	20.4	0.1	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpc34	subunit
MarR_2	PF12802.7	gi|227828905|ref|YP_002830685.1|	-	0.00031	20.5	0.1	0.00035	20.4	0.1	1.1	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|227828905|ref|YP_002830685.1|	-	0.0016	18.3	0.3	0.0018	18.0	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_20	PF12840.7	gi|227828905|ref|YP_002830685.1|	-	0.0031	17.5	0.0	0.004	17.2	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_12	PF08461.10	gi|227828905|ref|YP_002830685.1|	-	0.0041	17.0	0.4	0.0061	16.5	0.4	1.4	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.19	gi|227828905|ref|YP_002830685.1|	-	0.0056	16.5	0.3	0.0074	16.2	0.3	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|227828905|ref|YP_002830685.1|	-	0.0096	15.9	0.1	0.044	13.7	0.1	1.9	1	1	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|227828905|ref|YP_002830685.1|	-	0.01	15.8	0.1	0.013	15.5	0.1	1.1	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|227828905|ref|YP_002830685.1|	-	0.015	15.6	0.1	0.02	15.2	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_5	PF01022.20	gi|227828905|ref|YP_002830685.1|	-	0.02	14.7	0.0	0.025	14.4	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sulfolobus_pRN	PF05584.11	gi|227828905|ref|YP_002830685.1|	-	0.026	14.5	0.3	0.03	14.4	0.3	1.2	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_27	PF13463.6	gi|227828905|ref|YP_002830685.1|	-	0.034	14.6	0.1	0.039	14.5	0.1	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_micro	PF17007.5	gi|227828905|ref|YP_002830685.1|	-	0.05	12.4	0.2	0.051	12.4	0.2	1.1	1	0	0	1	1	1	0	HTH-like
GntR	PF00392.21	gi|227828905|ref|YP_002830685.1|	-	0.1	12.3	0.4	0.14	11.8	0.2	1.4	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_43	PF09904.9	gi|227828905|ref|YP_002830685.1|	-	0.11	12.4	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
5_3_exonuc	PF01367.20	gi|227828906|ref|YP_002830686.1|	-	0.1	13.2	0.5	0.35	11.5	0.5	1.8	2	0	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF1641	PF07849.11	gi|227828907|ref|YP_002830687.1|	-	2.2e-14	53.0	0.0	7.2e-14	51.4	0.0	2.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
DUF5327	PF17261.2	gi|227828907|ref|YP_002830687.1|	-	0.001	19.8	1.0	13	6.6	0.0	3.6	2	1	2	4	4	4	1	Family	of	unknown	function	(DUF5327)
DUF2267	PF10025.9	gi|227828907|ref|YP_002830687.1|	-	0.0039	17.5	0.4	1.9	8.7	0.1	3.1	1	1	2	3	3	3	2	Uncharacterized	conserved	protein	(DUF2267)
DUF3886	PF13025.6	gi|227828907|ref|YP_002830687.1|	-	0.0073	16.5	2.4	15	5.9	0.0	4.6	5	0	0	5	5	5	1	Protein	of	unknown	function	(DUF3886)
Rod-binding	PF10135.9	gi|227828907|ref|YP_002830687.1|	-	0.0083	16.7	0.3	19	5.9	0.1	3.9	4	0	0	4	4	4	1	Rod	binding	protein
DUF4854	PF16146.5	gi|227828907|ref|YP_002830687.1|	-	0.013	15.9	5.0	2.6	8.4	0.2	3.5	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4854)
aGPT-Pplase1	PF18723.1	gi|227828907|ref|YP_002830687.1|	-	0.08	12.4	0.1	0.31	10.4	0.0	1.8	1	1	0	2	2	2	0	alpha-glutamyl/putrescinyl	thymine	pyrophosphorylase	clade	1
DNA_pol3_a_NII	PF11490.8	gi|227828907|ref|YP_002830687.1|	-	0.7	9.8	3.9	4.5	7.2	0.2	2.9	2	1	1	3	3	3	0	DNA	polymerase	III	polC-type	N-terminus	II
GAT	PF03127.14	gi|227828907|ref|YP_002830687.1|	-	0.71	10.2	15.0	0.65	10.4	1.5	5.0	5	2	0	5	5	5	0	GAT	domain
DrsE	PF02635.15	gi|227828908|ref|YP_002830688.1|	-	1.9e-11	44.4	0.0	2.5e-11	44.0	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.6	gi|227828908|ref|YP_002830688.1|	-	9.5e-07	28.8	0.1	2.2e-06	27.6	0.2	1.6	1	1	1	2	2	2	1	DsrE/DsrF/DrsH-like	family
Pyr_redox_2	PF07992.14	gi|227828909|ref|YP_002830689.1|	-	4.2e-12	45.9	0.0	6.2e-11	42.1	0.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227828909|ref|YP_002830689.1|	-	0.12	13.0	0.2	4	8.1	0.0	2.8	2	1	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
TusA	PF01206.17	gi|227828910|ref|YP_002830690.1|	-	5.6e-13	48.5	0.0	6.2e-13	48.4	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE	PF02635.15	gi|227828911|ref|YP_002830691.1|	-	0.00084	19.7	0.0	0.00094	19.5	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Glyco_transf_4	PF13439.6	gi|227828911|ref|YP_002830691.1|	-	0.069	13.2	0.0	0.074	13.1	0.0	1.1	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
AMP-binding_C_2	PF14535.6	gi|227828912|ref|YP_002830692.1|	-	1e-16	61.0	3.1	6.2e-16	58.5	1.7	2.3	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|227828912|ref|YP_002830692.1|	-	9.8e-15	54.1	0.9	4.2e-14	52.0	0.9	2.1	1	1	0	1	1	1	1	AMP-binding	enzyme
DUF35_N	PF12172.8	gi|227828913|ref|YP_002830693.1|	-	1.1e-12	47.5	0.1	1.6e-12	47.0	0.1	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|227828913|ref|YP_002830693.1|	-	1.8e-11	43.8	0.0	2.9e-11	43.2	0.0	1.4	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
NOB1_Zn_bind	PF08772.11	gi|227828913|ref|YP_002830693.1|	-	0.034	14.3	0.1	0.048	13.8	0.1	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|227828913|ref|YP_002830693.1|	-	0.057	13.4	0.3	0.074	13.1	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|227828913|ref|YP_002830693.1|	-	0.091	12.6	1.1	6.6	6.7	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF2688	PF10892.8	gi|227828913|ref|YP_002830693.1|	-	0.5	9.9	3.1	0.33	10.5	0.6	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2688)
zf-CCHC	PF00098.23	gi|227828913|ref|YP_002830693.1|	-	1.5	9.0	8.9	2.2	8.5	2.1	2.3	2	0	0	2	2	2	0	Zinc	knuckle
Thiolase_N	PF00108.23	gi|227828914|ref|YP_002830694.1|	-	5.9e-20	71.7	0.3	1.1e-17	64.3	0.1	2.2	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|227828914|ref|YP_002830694.1|	-	6.6e-10	38.7	0.5	8.1e-09	35.2	0.1	2.7	3	0	0	3	3	3	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|227828914|ref|YP_002830694.1|	-	1.3e-06	28.2	4.2	2.9e-05	23.8	2.6	2.6	1	1	1	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|227828914|ref|YP_002830694.1|	-	0.0052	16.8	0.4	1.1	9.3	0.0	3.4	4	0	0	4	4	4	1	Beta-ketoacyl	synthase,	C-terminal	domain
ECH_1	PF00378.20	gi|227828915|ref|YP_002830695.1|	-	2.8e-83	279.1	0.1	3.4e-83	278.8	0.1	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|227828915|ref|YP_002830695.1|	-	6.8e-41	140.9	0.7	3.7e-38	131.9	0.1	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
Peptidase_S49	PF01343.18	gi|227828915|ref|YP_002830695.1|	-	0.0032	17.4	0.1	0.018	15.0	0.0	2.1	2	0	0	2	2	2	1	Peptidase	family	S49
ACPS	PF01648.20	gi|227828915|ref|YP_002830695.1|	-	0.079	13.1	0.1	0.14	12.3	0.1	1.4	1	0	0	1	1	1	0	4'-phosphopantetheinyl	transferase	superfamily
VapB_antitoxin	PF09957.9	gi|227828915|ref|YP_002830695.1|	-	1.6	8.7	4.8	5.4	7.0	0.5	3.5	3	1	0	3	3	3	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
ECH_1	PF00378.20	gi|227828916|ref|YP_002830696.1|	-	3.4e-44	151.0	0.0	3.8e-44	150.9	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|227828916|ref|YP_002830696.1|	-	6.2e-25	88.4	0.0	5.1e-23	82.1	0.0	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
4HBT	PF03061.22	gi|227828917|ref|YP_002830697.1|	-	1.8e-11	44.2	0.0	2.6e-11	43.7	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|227828917|ref|YP_002830697.1|	-	0.00068	19.8	0.0	0.00092	19.4	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|227828917|ref|YP_002830697.1|	-	0.0049	17.2	0.0	0.0063	16.8	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
Acyl-ACP_TE	PF01643.17	gi|227828917|ref|YP_002830697.1|	-	0.069	12.4	0.1	0.082	12.2	0.1	1.1	1	0	0	1	1	1	0	Acyl-ACP	thioesterase
AurF	PF11583.8	gi|227828918|ref|YP_002830698.1|	-	2.3e-05	23.8	0.1	0.00014	21.3	0.0	2.2	2	1	0	2	2	2	1	P-aminobenzoate	N-oxygenase	AurF
Rubrerythrin	PF02915.17	gi|227828918|ref|YP_002830698.1|	-	0.005	17.2	0.4	0.084	13.3	0.2	2.7	3	1	0	3	3	3	1	Rubrerythrin
RAP-1	PF03085.15	gi|227828918|ref|YP_002830698.1|	-	0.0083	15.9	1.5	0.013	15.2	1.5	1.2	1	0	0	1	1	1	1	Rhoptry-associated	protein	1	(RAP-1)
Ribonuc_red_sm	PF00268.21	gi|227828918|ref|YP_002830698.1|	-	0.032	13.7	4.5	0.08	12.4	4.5	1.5	1	1	0	1	1	1	0	Ribonucleotide	reductase,	small	chain
Ferritin_2	PF13668.6	gi|227828918|ref|YP_002830698.1|	-	0.042	14.1	0.0	0.064	13.5	0.0	1.3	1	0	0	1	1	1	0	Ferritin-like	domain
PhoU	PF01895.19	gi|227828919|ref|YP_002830699.1|	-	1.6e-08	34.9	11.9	0.0001	22.7	3.0	3.1	2	1	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|227828919|ref|YP_002830699.1|	-	1e-07	31.7	0.3	2.4e-07	30.5	0.3	1.7	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Vps54	PF07928.12	gi|227828919|ref|YP_002830699.1|	-	0.0052	17.2	0.9	0.21	12.0	0.8	2.6	1	1	0	1	1	1	1	Vps54-like	protein
DFF-C	PF09033.10	gi|227828919|ref|YP_002830699.1|	-	0.057	13.3	2.0	0.11	12.4	1.5	1.9	1	1	1	2	2	2	0	DNA	Fragmentation	factor	45kDa,	C	terminal	domain
dCache_2	PF08269.11	gi|227828919|ref|YP_002830699.1|	-	0.08	12.1	6.4	0.41	9.8	5.0	2.1	2	0	0	2	2	2	0	Cache	domain
Hom_end_hint	PF05203.16	gi|227828919|ref|YP_002830699.1|	-	0.18	11.7	0.2	0.29	11.0	0.2	1.4	1	0	0	1	1	1	0	Hom_end-associated	Hint
PMC2NT	PF08066.12	gi|227828919|ref|YP_002830699.1|	-	0.21	12.3	1.7	0.39	11.4	0.2	2.1	2	0	0	2	2	2	0	PMC2NT	(NUC016)	domain
SBP_bac_5	PF00496.22	gi|227828920|ref|YP_002830700.1|	-	1.2e-63	215.3	6.8	1.2e-63	215.3	6.8	2.3	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|227828920|ref|YP_002830700.1|	-	0.00064	19.7	2.4	0.00064	19.7	2.4	1.7	2	0	0	2	2	2	1	Rifin
SSP160	PF06933.11	gi|227828920|ref|YP_002830700.1|	-	0.038	12.2	21.9	0.07	11.3	21.9	1.3	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
DUF4064	PF13273.6	gi|227828920|ref|YP_002830700.1|	-	0.056	13.7	4.9	0.043	14.1	1.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
TMEM154	PF15102.6	gi|227828920|ref|YP_002830700.1|	-	0.21	11.5	10.7	0.52	10.2	10.7	1.6	1	0	0	1	1	1	0	TMEM154	protein	family
DUF5305	PF17231.2	gi|227828920|ref|YP_002830700.1|	-	2.5	7.4	10.7	4.8	6.5	10.7	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
MGC-24	PF05283.11	gi|227828920|ref|YP_002830700.1|	-	4	7.9	12.2	9.2	6.7	11.6	1.8	2	0	0	2	2	2	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
Stevor	PF17410.2	gi|227828920|ref|YP_002830700.1|	-	4.6	6.7	9.2	0.41	10.2	4.4	1.7	2	0	0	2	2	2	0	Subtelomeric	Variable	Open	Reading	frame
UL45	PF05473.12	gi|227828920|ref|YP_002830700.1|	-	4.9	6.7	8.0	10	5.7	8.0	1.4	1	0	0	1	1	1	0	UL45	protein,	carbohydrate-binding	C-type	lectin-like
BPD_transp_1	PF00528.22	gi|227828921|ref|YP_002830701.1|	-	4.6e-48	163.4	15.1	4.6e-48	163.4	15.1	2.2	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
MerC	PF03203.14	gi|227828921|ref|YP_002830701.1|	-	7	7.1	11.0	0.37	11.3	2.8	2.7	3	0	0	3	3	3	0	MerC	mercury	resistance	protein
BPD_transp_1	PF00528.22	gi|227828922|ref|YP_002830702.1|	-	1.6e-26	93.2	17.2	1.6e-26	93.2	17.2	1.8	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|227828923|ref|YP_002830703.1|	-	8.2e-28	97.6	0.0	1.2e-27	97.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828923|ref|YP_002830703.1|	-	1.6e-17	63.8	0.0	2.7e-17	63.0	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227828923|ref|YP_002830703.1|	-	2.2e-07	31.0	1.6	0.00024	21.0	0.2	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828923|ref|YP_002830703.1|	-	3.8e-07	29.8	0.1	6.3e-07	29.1	0.1	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|227828923|ref|YP_002830703.1|	-	2.8e-05	23.7	0.0	5.2e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|227828923|ref|YP_002830703.1|	-	0.00055	20.2	0.1	0.011	16.0	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|227828923|ref|YP_002830703.1|	-	0.0014	18.1	0.9	0.029	13.8	0.2	2.5	2	1	1	3	3	3	1	Bacterial	TniB	protein
AAA_18	PF13238.6	gi|227828923|ref|YP_002830703.1|	-	0.0091	16.5	0.1	0.067	13.7	0.0	2.1	1	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|227828923|ref|YP_002830703.1|	-	0.011	16.1	0.0	0.018	15.5	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
PRK	PF00485.18	gi|227828923|ref|YP_002830703.1|	-	0.021	14.5	0.0	0.033	13.9	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_23	PF13476.6	gi|227828923|ref|YP_002830703.1|	-	0.023	15.2	0.0	0.036	14.6	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|227828923|ref|YP_002830703.1|	-	0.024	14.4	0.6	6.3	6.5	0.0	2.8	2	1	1	3	3	3	0	IstB-like	ATP	binding	protein
AAA_15	PF13175.6	gi|227828923|ref|YP_002830703.1|	-	0.067	12.9	0.4	0.44	10.2	0.0	2.0	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|227828923|ref|YP_002830703.1|	-	0.088	13.0	0.0	0.19	11.9	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|227828923|ref|YP_002830703.1|	-	0.12	11.2	0.4	6.7	5.4	0.0	2.2	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
NB-ARC	PF00931.22	gi|227828923|ref|YP_002830703.1|	-	0.15	11.2	0.3	0.39	9.9	0.0	1.7	2	0	0	2	2	2	0	NB-ARC	domain
Mg_chelatase	PF01078.21	gi|227828923|ref|YP_002830703.1|	-	0.16	11.4	0.0	0.52	9.7	0.0	1.8	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
GCD14	PF08704.10	gi|227828923|ref|YP_002830703.1|	-	0.17	11.6	0.4	0.32	10.6	0.0	1.6	2	0	0	2	2	2	0	tRNA	methyltransferase	complex	GCD14	subunit
ABC_tran	PF00005.27	gi|227828924|ref|YP_002830704.1|	-	1.2e-35	123.0	0.0	1.7e-35	122.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|227828924|ref|YP_002830704.1|	-	2.2e-20	72.9	0.1	6.4e-20	71.4	0.1	1.8	2	0	0	2	2	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|227828924|ref|YP_002830704.1|	-	2.3e-08	34.2	0.8	1.7e-05	24.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|227828924|ref|YP_002830704.1|	-	6.9e-06	26.4	0.5	2e-05	24.9	0.5	1.6	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|227828924|ref|YP_002830704.1|	-	0.00019	21.0	2.1	0.0026	17.2	2.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|227828924|ref|YP_002830704.1|	-	0.0014	19.1	0.1	0.0031	17.9	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_13	PF13166.6	gi|227828924|ref|YP_002830704.1|	-	0.0015	17.3	0.0	1.2	7.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA	PF00004.29	gi|227828924|ref|YP_002830704.1|	-	0.0028	18.1	0.7	0.11	12.9	0.7	2.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
dNK	PF01712.19	gi|227828924|ref|YP_002830704.1|	-	0.0057	16.5	0.1	0.0097	15.8	0.1	1.4	1	0	0	1	1	1	1	Deoxynucleoside	kinase
ATPase	PF06745.13	gi|227828924|ref|YP_002830704.1|	-	0.0087	15.4	1.1	0.072	12.4	0.2	2.3	2	1	0	2	2	2	1	KaiC
AAA_25	PF13481.6	gi|227828924|ref|YP_002830704.1|	-	0.013	15.0	0.3	0.073	12.6	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|227828924|ref|YP_002830704.1|	-	0.026	14.3	0.1	0.05	13.4	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|227828924|ref|YP_002830704.1|	-	0.048	14.2	0.7	0.11	13.1	0.7	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|227828924|ref|YP_002830704.1|	-	0.059	13.1	0.0	0.35	10.5	0.0	1.5	1	1	1	2	2	2	0	AAA	ATPase	domain
G-alpha	PF00503.20	gi|227828924|ref|YP_002830704.1|	-	0.06	12.5	0.0	0.087	12.0	0.0	1.3	1	0	0	1	1	1	0	G-protein	alpha	subunit
SbcCD_C	PF13558.6	gi|227828924|ref|YP_002830704.1|	-	0.076	13.3	0.3	0.47	10.7	0.3	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.12	gi|227828924|ref|YP_002830704.1|	-	0.12	12.3	0.1	0.17	11.8	0.1	1.5	1	1	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|227828924|ref|YP_002830704.1|	-	0.16	12.0	0.5	7.6	6.5	0.1	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|227828924|ref|YP_002830704.1|	-	0.17	12.0	0.3	0.46	10.7	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|227828924|ref|YP_002830704.1|	-	0.18	12.3	0.4	0.54	10.7	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
Ntox35	PF15534.6	gi|227828924|ref|YP_002830704.1|	-	2.5	8.6	5.0	3.4	8.2	3.2	2.2	2	1	0	2	2	2	0	Bacterial	toxin	35
bPH_2	PF03703.14	gi|227828925|ref|YP_002830705.1|	-	0.00022	21.3	0.0	0.0014	18.7	0.0	2.2	1	1	0	1	1	1	1	Bacterial	PH	domain
zf-LYAR	PF08790.11	gi|227828925|ref|YP_002830705.1|	-	0.019	14.8	0.1	0.036	14.0	0.1	1.4	1	0	0	1	1	1	0	LYAR-type	C2HC	zinc	finger
AhpC-TSA	PF00578.21	gi|227828926|ref|YP_002830706.1|	-	1.5e-38	131.5	0.2	1.8e-38	131.3	0.2	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|227828926|ref|YP_002830706.1|	-	3.5e-28	98.2	0.2	4.1e-28	98.0	0.2	1.0	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|227828926|ref|YP_002830706.1|	-	0.002	18.4	0.1	0.0035	17.7	0.1	1.4	1	0	0	1	1	1	1	Thioredoxin-like
SCO1-SenC	PF02630.14	gi|227828926|ref|YP_002830706.1|	-	0.0042	17.0	0.2	0.0061	16.5	0.2	1.3	1	0	0	1	1	1	1	SCO1/SenC
AhpC-TSA_2	PF13911.6	gi|227828926|ref|YP_002830706.1|	-	0.13	12.4	0.0	1.4	9.1	0.0	2.0	1	1	1	2	2	2	0	AhpC/TSA	antioxidant	enzyme
Lactococcin	PF04369.13	gi|227828926|ref|YP_002830706.1|	-	0.19	11.9	0.1	0.32	11.1	0.1	1.3	1	0	0	1	1	1	0	Lactococcin-like	family
Trypsin_2	PF13365.6	gi|227828927|ref|YP_002830707.1|	-	1.3e-21	78.1	0.0	1.9e-21	77.5	0.0	1.2	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|227828927|ref|YP_002830707.1|	-	2.2e-13	50.3	0.1	5.7e-13	49.0	0.1	1.8	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|227828927|ref|YP_002830707.1|	-	4.8e-11	42.3	0.0	9.8e-11	41.3	0.0	1.6	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.26	gi|227828927|ref|YP_002830707.1|	-	2.9e-08	33.8	0.1	7.7e-07	29.1	0.1	2.1	1	1	0	1	1	1	1	Trypsin
PDZ	PF00595.24	gi|227828927|ref|YP_002830707.1|	-	6.2e-07	29.7	0.1	1.7e-06	28.3	0.1	1.8	1	0	0	1	1	1	1	PDZ	domain
Peptidase_S32	PF05579.13	gi|227828927|ref|YP_002830707.1|	-	0.0015	17.8	0.1	0.046	12.9	0.1	2.1	1	1	0	1	1	1	1	Equine	arteritis	virus	serine	endopeptidase	S32
Tricorn_PDZ	PF14685.6	gi|227828927|ref|YP_002830707.1|	-	0.0031	17.5	0.1	0.0094	15.9	0.1	1.9	1	1	1	2	2	2	1	Tricorn	protease	PDZ	domain
Peptidase_S46	PF10459.9	gi|227828927|ref|YP_002830707.1|	-	0.029	13.0	0.1	0.041	12.5	0.1	1.2	1	0	0	1	1	1	0	Peptidase	S46
DUF4382	PF14321.6	gi|227828928|ref|YP_002830708.1|	-	1.2e-12	48.2	0.0	1.4e-12	48.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4382)
GCP5-Mod21	PF14609.6	gi|227828928|ref|YP_002830708.1|	-	0.13	10.6	0.3	0.16	10.3	0.3	1.0	1	0	0	1	1	1	0	gamma-Tubulin	ring	complex	non-core	subunit	mod21
BACON	PF13004.7	gi|227828928|ref|YP_002830708.1|	-	0.35	10.9	3.0	0.66	10.0	1.6	2.1	1	1	1	2	2	2	0	Putative	binding	domain,	N-terminal
Glycos_transf_1	PF00534.20	gi|227828930|ref|YP_002830710.1|	-	2.1e-25	89.3	0.0	3.4e-25	88.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|227828930|ref|YP_002830710.1|	-	5.4e-10	39.8	0.0	8.6e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|227828930|ref|YP_002830710.1|	-	2.1e-06	28.0	0.0	3.6e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
CENP-S	PF15630.6	gi|227828932|ref|YP_002830712.1|	-	0.014	15.7	0.2	0.046	14.1	0.0	1.9	2	1	0	2	2	2	0	CENP-S	protein
Sporozoite_P67	PF05642.11	gi|227828932|ref|YP_002830712.1|	-	0.27	9.3	0.4	0.27	9.2	0.4	1.1	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
Cas_DxTHG	PF09455.10	gi|227828933|ref|YP_002830713.1|	-	0.3	10.6	15.5	0.55	9.8	15.5	1.4	1	1	0	1	1	1	0	CRISPR-associated	(Cas)	DxTHG	family
ABC1	PF03109.16	gi|227828934|ref|YP_002830714.1|	-	9.2e-21	74.2	0.1	3.4e-20	72.4	0.0	2.0	2	0	0	2	2	2	1	ABC1	family
RIO1	PF01163.22	gi|227828934|ref|YP_002830714.1|	-	2.8e-06	27.0	0.3	6.5e-06	25.9	0.1	1.6	2	0	0	2	2	2	1	RIO1	family
Pkinase	PF00069.25	gi|227828934|ref|YP_002830714.1|	-	2.4e-05	23.9	1.5	0.0001	21.7	0.9	2.2	2	1	0	2	2	2	1	Protein	kinase	domain
APH	PF01636.23	gi|227828934|ref|YP_002830714.1|	-	0.056	13.4	0.0	0.087	12.7	0.0	1.5	1	1	0	1	1	1	0	Phosphotransferase	enzyme	family
Gp-FAR-1	PF05823.12	gi|227828934|ref|YP_002830714.1|	-	0.063	13.6	0.8	21	5.4	0.0	3.6	4	0	0	4	4	4	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
ArsA_HSP20	PF17886.1	gi|227828935|ref|YP_002830715.1|	-	1.3e-10	40.7	0.0	2.2e-10	39.9	0.0	1.4	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|227828935|ref|YP_002830715.1|	-	5.5e-09	36.1	0.1	6.4e-09	35.9	0.1	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
DUF4403	PF14356.6	gi|227828935|ref|YP_002830715.1|	-	0.007	15.1	0.1	0.025	13.3	0.1	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4403)
12TM_1	PF09847.9	gi|227828937|ref|YP_002830717.1|	-	4.3e-95	319.4	82.7	5e-95	319.2	82.7	1.0	1	0	0	1	1	1	1	Membrane	protein	of	12	TMs
DUF3493	PF11998.8	gi|227828937|ref|YP_002830717.1|	-	0.36	11.0	7.0	7	6.9	1.1	2.7	2	0	0	2	2	2	0	Low	psii	accumulation1	/	Rep27
ABC_tran	PF00005.27	gi|227828938|ref|YP_002830718.1|	-	4.1e-21	75.9	0.0	6.4e-21	75.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|227828938|ref|YP_002830718.1|	-	1.7e-13	51.0	0.5	8.3e-07	29.1	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|227828938|ref|YP_002830718.1|	-	1.3e-05	24.8	0.7	0.0085	15.5	0.1	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|227828938|ref|YP_002830718.1|	-	4.2e-05	23.2	0.0	7e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|227828938|ref|YP_002830718.1|	-	0.00023	21.7	0.0	0.00049	20.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|227828938|ref|YP_002830718.1|	-	0.0029	17.3	0.0	0.0051	16.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|227828938|ref|YP_002830718.1|	-	0.0047	16.7	0.9	0.016	14.9	0.1	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|227828938|ref|YP_002830718.1|	-	0.0079	16.6	0.1	0.025	15.0	0.0	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|227828938|ref|YP_002830718.1|	-	0.013	15.5	0.1	0.024	14.6	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
STAS	PF01740.21	gi|227828938|ref|YP_002830718.1|	-	0.029	14.0	0.0	0.046	13.4	0.0	1.5	1	0	0	1	1	1	0	STAS	domain
AAA_30	PF13604.6	gi|227828938|ref|YP_002830718.1|	-	0.031	14.0	0.0	0.045	13.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|227828938|ref|YP_002830718.1|	-	0.054	13.3	0.1	0.12	12.1	0.0	1.6	2	0	0	2	2	2	0	MukB	N-terminal
NACHT	PF05729.12	gi|227828938|ref|YP_002830718.1|	-	0.055	13.4	0.1	3.6	7.5	0.0	2.6	3	0	0	3	3	3	0	NACHT	domain
AAA_19	PF13245.6	gi|227828938|ref|YP_002830718.1|	-	0.085	13.2	0.0	1.2	9.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|227828938|ref|YP_002830718.1|	-	0.088	12.5	0.0	1.4	8.6	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
PCMT	PF01135.19	gi|227828939|ref|YP_002830719.1|	-	7.1e-41	140.3	0.0	9.5e-41	139.9	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.20	gi|227828939|ref|YP_002830719.1|	-	1.5e-10	40.6	0.3	2.9e-10	39.7	0.1	1.5	1	1	1	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|227828939|ref|YP_002830719.1|	-	7.4e-06	26.6	0.0	1.3e-05	25.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|227828939|ref|YP_002830719.1|	-	0.00052	19.8	0.1	0.0015	18.3	0.0	1.7	2	0	0	2	2	2	1	Met-10+	like-protein
Methyltransf_31	PF13847.6	gi|227828939|ref|YP_002830719.1|	-	0.00062	19.6	0.1	0.0012	18.6	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|227828939|ref|YP_002830719.1|	-	0.0048	16.5	0.0	0.0077	15.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
DOT1	PF08123.13	gi|227828939|ref|YP_002830719.1|	-	0.0049	16.4	0.0	0.0076	15.8	0.0	1.2	1	0	0	1	1	1	1	Histone	methylation	protein	DOT1
Methyltransf_23	PF13489.6	gi|227828939|ref|YP_002830719.1|	-	0.014	15.2	0.0	0.022	14.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|227828939|ref|YP_002830719.1|	-	0.017	15.7	0.0	0.028	15.1	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.20	gi|227828939|ref|YP_002830719.1|	-	0.038	13.3	0.0	0.052	12.8	0.0	1.3	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
PrmA	PF06325.13	gi|227828939|ref|YP_002830719.1|	-	0.053	12.9	0.0	0.065	12.6	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltr_RsmB-F	PF01189.17	gi|227828939|ref|YP_002830719.1|	-	0.065	12.9	0.0	0.52	9.9	0.0	2.0	2	0	0	2	2	2	0	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_4	PF02390.17	gi|227828939|ref|YP_002830719.1|	-	0.079	12.4	0.0	0.18	11.3	0.0	1.6	1	0	0	1	1	1	0	Putative	methyltransferase
TENA_THI-4	PF03070.16	gi|227828940|ref|YP_002830720.1|	-	7.2e-42	143.6	3.0	8.2e-42	143.4	3.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Aminotran_5	PF00266.19	gi|227828941|ref|YP_002830721.1|	-	1.3e-37	129.7	0.0	1.7e-37	129.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
PRP4	PF08799.11	gi|227828941|ref|YP_002830721.1|	-	0.046	13.3	0.3	0.1	12.2	0.3	1.5	1	0	0	1	1	1	0	pre-mRNA	processing	factor	4	(PRP4)	like
DsrH	PF04077.12	gi|227828941|ref|YP_002830721.1|	-	0.074	13.2	0.0	0.39	10.9	0.0	2.1	2	0	0	2	2	2	0	DsrH	like	protein
DUF2194	PF09960.9	gi|227828942|ref|YP_002830722.1|	-	0.0012	17.3	1.2	0.0012	17.3	1.2	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	conserved	in	bacteria	(DUF2194)
DUF5071	PF16804.5	gi|227828942|ref|YP_002830722.1|	-	0.018	15.3	0.4	0.025	14.8	0.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5071)
EVE	PF01878.18	gi|227828943|ref|YP_002830723.1|	-	9.8e-23	80.8	0.8	1.2e-22	80.5	0.8	1.1	1	0	0	1	1	1	1	EVE	domain
DUF2197	PF09963.9	gi|227828943|ref|YP_002830723.1|	-	0.14	12.5	0.5	0.23	11.7	0.1	1.6	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
RET_CLD3	PF17812.1	gi|227828943|ref|YP_002830723.1|	-	0.16	12.2	0.0	0.23	11.7	0.0	1.3	1	0	0	1	1	1	0	RET	Cadherin	like	domain	3
Glu_cyclase_2	PF05096.12	gi|227828944|ref|YP_002830724.1|	-	0.069	12.6	0.5	0.073	12.5	0.5	1.1	1	0	0	1	1	1	0	Glutamine	cyclotransferase
TIM	PF00121.18	gi|227828945|ref|YP_002830725.1|	-	6.2e-14	51.9	0.0	2.2e-13	50.2	0.0	1.7	2	0	0	2	2	2	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|227828945|ref|YP_002830725.1|	-	6.9e-05	22.3	0.3	0.00012	21.5	0.3	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|227828945|ref|YP_002830725.1|	-	7.1e-05	22.4	0.0	0.0001	21.8	0.0	1.3	1	0	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|227828945|ref|YP_002830725.1|	-	7.5e-05	21.9	0.1	0.00013	21.2	0.1	1.3	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|227828945|ref|YP_002830725.1|	-	0.0002	20.9	0.6	0.00082	18.9	0.1	2.1	3	0	0	3	3	3	1	Histidine	biosynthesis	protein
DUF561	PF04481.12	gi|227828945|ref|YP_002830725.1|	-	0.0023	17.2	1.9	0.011	15.0	0.3	2.4	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF561)
IGPS	PF00218.21	gi|227828945|ref|YP_002830725.1|	-	0.0028	16.9	0.0	0.0041	16.3	0.0	1.2	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
Glu_synthase	PF01645.17	gi|227828945|ref|YP_002830725.1|	-	0.0036	16.5	0.1	0.0051	16.0	0.1	1.1	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
G3P_antiterm	PF04309.12	gi|227828945|ref|YP_002830725.1|	-	0.0042	16.5	2.2	0.0082	15.6	0.3	2.1	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
DHO_dh	PF01180.21	gi|227828945|ref|YP_002830725.1|	-	0.0049	16.1	1.2	0.0059	15.9	0.2	1.6	3	0	0	3	3	3	1	Dihydroorotate	dehydrogenase
IMPDH	PF00478.25	gi|227828945|ref|YP_002830725.1|	-	0.016	14.2	0.6	0.023	13.7	0.6	1.2	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
DUF1729	PF08354.10	gi|227828945|ref|YP_002830725.1|	-	0.042	12.8	0.0	0.068	12.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1729)
Trp_syntA	PF00290.20	gi|227828945|ref|YP_002830725.1|	-	0.067	12.0	0.5	0.12	11.2	0.5	1.4	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DUF429	PF04250.13	gi|227828946|ref|YP_002830726.1|	-	4.1e-10	39.8	0.4	0.00014	21.7	0.0	2.6	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF429)
TctB	PF07331.11	gi|227828947|ref|YP_002830727.1|	-	0.74	10.1	22.5	0.93	9.8	22.5	1.2	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
RELT	PF12606.8	gi|227828947|ref|YP_002830727.1|	-	1.3	8.1	4.4	5.1	6.2	4.4	2.0	1	0	0	1	1	1	0	Tumour	necrosis	factor	receptor	superfamily	member	19
Yip1	PF04893.17	gi|227828947|ref|YP_002830727.1|	-	4.9	6.8	33.2	6	6.6	31.7	1.7	1	1	0	1	1	1	0	Yip1	domain
Citrate_synt	PF00285.21	gi|227828948|ref|YP_002830728.1|	-	2.2e-118	395.5	0.0	2.5e-118	395.3	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
CBS	PF00571.28	gi|227828949|ref|YP_002830729.1|	-	3.5e-27	94.6	2.1	2e-14	53.7	0.3	2.1	2	0	0	2	2	2	2	CBS	domain
IF3_N	PF05198.16	gi|227828949|ref|YP_002830729.1|	-	0.0097	16.2	1.5	2.5	8.4	0.2	2.8	2	1	1	3	3	3	2	Translation	initiation	factor	IF-3,	N-terminal	domain
Acetyltransf_10	PF13673.7	gi|227828949|ref|YP_002830729.1|	-	0.034	14.1	0.0	0.078	12.9	0.0	1.6	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
DUF896	PF05979.12	gi|227828949|ref|YP_002830729.1|	-	0.062	13.2	0.3	4	7.4	0.1	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF896)
PEP_mutase	PF13714.6	gi|227828950|ref|YP_002830730.1|	-	5.3e-55	186.5	0.3	6.1e-55	186.3	0.3	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.21	gi|227828950|ref|YP_002830730.1|	-	1.5e-10	40.2	0.4	2.1e-10	39.8	0.4	1.2	1	0	0	1	1	1	1	Isocitrate	lyase	family
DUF881	PF05949.12	gi|227828950|ref|YP_002830730.1|	-	0.022	14.7	0.0	0.041	13.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF881)
ThiG	PF05690.14	gi|227828950|ref|YP_002830730.1|	-	0.093	12.0	0.4	0.28	10.5	0.4	2.0	1	1	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
MmgE_PrpD	PF03972.14	gi|227828951|ref|YP_002830731.1|	-	4.4e-104	348.5	0.0	5.4e-104	348.2	0.0	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
DUF2262	PF10020.9	gi|227828951|ref|YP_002830731.1|	-	0.03	14.7	1.3	0.058	13.8	1.3	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2262)
Ldh_1_N	PF00056.23	gi|227828952|ref|YP_002830732.1|	-	1.4e-29	103.0	0.0	2.7e-29	102.1	0.0	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|227828952|ref|YP_002830732.1|	-	3.4e-08	33.6	0.0	5.3e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
F420_oxidored	PF03807.17	gi|227828952|ref|YP_002830732.1|	-	0.00058	20.4	0.0	0.0014	19.1	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|227828952|ref|YP_002830732.1|	-	0.028	14.6	0.0	0.06	13.5	0.0	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|227828952|ref|YP_002830732.1|	-	0.051	13.5	0.3	0.17	11.9	0.0	2.0	2	1	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.18	gi|227828952|ref|YP_002830732.1|	-	0.055	13.4	0.0	0.094	12.6	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DDR	PF08841.10	gi|227828952|ref|YP_002830732.1|	-	0.072	12.1	0.1	0.11	11.5	0.1	1.2	1	0	0	1	1	1	0	Diol	dehydratase	reactivase	ATPase-like	domain
2-Hacid_dh_C	PF02826.19	gi|227828952|ref|YP_002830732.1|	-	0.1	12.0	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|227828953|ref|YP_002830733.1|	-	1.4e-22	80.3	0.0	4.1e-22	78.8	0.0	1.7	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|227828953|ref|YP_002830733.1|	-	1.4e-18	67.4	0.0	6e-18	65.3	0.0	2.0	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|227828953|ref|YP_002830733.1|	-	2.2e-06	27.0	0.0	6.3e-06	25.5	0.0	1.8	2	1	0	2	2	2	1	RmlD	substrate	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|227828953|ref|YP_002830733.1|	-	0.00015	21.4	0.0	0.00031	20.4	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Polysacc_synt_2	PF02719.15	gi|227828953|ref|YP_002830733.1|	-	0.0039	16.4	0.1	0.0081	15.3	0.0	1.7	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
KR	PF08659.10	gi|227828953|ref|YP_002830733.1|	-	0.012	15.6	0.0	0.021	14.8	0.0	1.3	1	0	0	1	1	1	0	KR	domain
Glyco_transf_4	PF13439.6	gi|227828953|ref|YP_002830733.1|	-	0.031	14.3	0.1	0.067	13.2	0.1	1.5	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Glyco_transf_28	PF03033.20	gi|227828953|ref|YP_002830733.1|	-	0.15	12.1	0.0	0.52	10.4	0.0	1.8	2	0	0	2	2	2	0	Glycosyltransferase	family	28	N-terminal	domain
PDDEXK_3	PF13366.6	gi|227828954|ref|YP_002830734.1|	-	0.067	13.6	1.5	0.21	11.9	0.6	2.1	2	0	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
HTH_24	PF13412.6	gi|227828955|ref|YP_002830735.1|	-	3.7e-20	71.2	0.2	1.7e-10	40.3	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|227828955|ref|YP_002830735.1|	-	2.5e-17	62.4	0.0	1.5e-11	44.0	0.1	2.4	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.20	gi|227828955|ref|YP_002830735.1|	-	2e-07	30.8	0.1	0.00018	21.3	0.1	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|227828955|ref|YP_002830735.1|	-	6.5e-07	29.2	0.3	2.7e-05	24.0	0.2	2.7	3	0	0	3	3	3	1	HTH	domain
MarR	PF01047.22	gi|227828955|ref|YP_002830735.1|	-	2.4e-06	27.4	0.1	0.0035	17.2	0.0	2.9	3	0	0	3	3	3	1	MarR	family
HTH_10	PF04967.12	gi|227828955|ref|YP_002830735.1|	-	3.3e-06	26.8	0.1	0.024	14.4	0.0	2.7	3	0	0	3	3	2	2	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|227828955|ref|YP_002830735.1|	-	5.8e-06	26.1	0.1	0.071	13.0	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_8	PF02954.19	gi|227828955|ref|YP_002830735.1|	-	2.4e-05	24.0	0.1	0.023	14.5	0.0	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	Fis	family
HTH_DeoR	PF08220.12	gi|227828955|ref|YP_002830735.1|	-	4.1e-05	23.2	0.0	0.00019	21.1	0.0	2.1	3	0	0	3	3	2	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|227828955|ref|YP_002830735.1|	-	5.2e-05	23.2	0.0	0.14	12.2	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|227828955|ref|YP_002830735.1|	-	0.0011	18.7	0.0	1.4	8.8	0.0	2.4	2	0	0	2	2	2	2	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|227828955|ref|YP_002830735.1|	-	0.0012	18.5	0.2	0.23	11.1	0.0	2.6	3	0	0	3	3	2	1	Sigma-70,	region	4
GerE	PF00196.19	gi|227828955|ref|YP_002830735.1|	-	0.0013	18.2	0.0	0.12	11.9	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
HTH_28	PF13518.6	gi|227828955|ref|YP_002830735.1|	-	0.0033	17.5	0.0	1.1	9.4	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|227828955|ref|YP_002830735.1|	-	0.0053	16.9	0.0	2.4	8.4	0.0	2.5	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Mga	PF08280.11	gi|227828955|ref|YP_002830735.1|	-	0.0066	16.5	0.0	0.039	14.0	0.1	2.1	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
TFIIE_alpha	PF02002.17	gi|227828955|ref|YP_002830735.1|	-	0.0084	16.0	1.1	0.058	13.3	0.2	2.5	3	0	0	3	3	3	1	TFIIE	alpha	subunit
YdaS_antitoxin	PF15943.5	gi|227828955|ref|YP_002830735.1|	-	0.01	15.7	0.0	3.5	7.6	0.0	2.4	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_Crp_2	PF13545.6	gi|227828955|ref|YP_002830735.1|	-	0.012	15.6	0.0	3.2	7.8	0.0	2.3	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_17	PF12728.7	gi|227828955|ref|YP_002830735.1|	-	0.014	15.5	0.0	0.13	12.5	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|227828955|ref|YP_002830735.1|	-	0.015	15.2	0.0	2.4	8.2	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
GntR	PF00392.21	gi|227828955|ref|YP_002830735.1|	-	0.018	14.7	0.0	0.049	13.3	0.0	1.7	2	0	0	2	2	1	0	Bacterial	regulatory	proteins,	gntR	family
Sigma70_r4	PF04545.16	gi|227828955|ref|YP_002830735.1|	-	0.018	14.5	0.0	0.28	10.7	0.1	2.2	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_50	PF18024.1	gi|227828955|ref|YP_002830735.1|	-	0.022	14.3	0.0	15	5.3	0.0	3.1	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|227828955|ref|YP_002830735.1|	-	0.027	14.5	0.0	16	5.7	0.0	2.9	3	0	0	3	3	2	0	Helix-turn-helix
NUMOD1	PF07453.13	gi|227828955|ref|YP_002830735.1|	-	0.036	14.3	0.0	0.34	11.2	0.0	2.7	3	0	0	3	3	1	0	NUMOD1	domain
SET_assoc	PF11767.8	gi|227828955|ref|YP_002830735.1|	-	0.044	13.4	0.2	0.2	11.3	0.0	2.1	2	0	0	2	2	2	0	Histone	lysine	methyltransferase	SET	associated
HTH_38	PF13936.6	gi|227828955|ref|YP_002830735.1|	-	0.047	13.5	0.6	1.5	8.6	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
MerR	PF00376.23	gi|227828955|ref|YP_002830735.1|	-	0.069	12.9	0.0	0.22	11.3	0.0	1.8	1	0	0	1	1	1	0	MerR	family	regulatory	protein
TrmB	PF01978.19	gi|227828955|ref|YP_002830735.1|	-	0.08	12.8	0.2	2.6	8.0	0.1	3.1	3	1	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_30	PF13556.6	gi|227828955|ref|YP_002830735.1|	-	0.12	12.2	0.0	5.3	6.9	0.0	2.3	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
HTH_36	PF13730.6	gi|227828955|ref|YP_002830735.1|	-	0.14	12.1	0.0	0.52	10.3	0.1	2.0	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_12	PF08461.10	gi|227828955|ref|YP_002830735.1|	-	0.4	10.7	2.6	0.62	10.0	0.1	2.5	3	1	0	3	3	3	0	Ribonuclease	R	winged-helix	domain
PIN	PF01850.21	gi|227828956|ref|YP_002830736.1|	-	4.4e-09	36.9	0.0	4.9e-09	36.7	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
Baculo_LEF-2	PF03041.14	gi|227828956|ref|YP_002830736.1|	-	0.066	12.9	0.1	0.075	12.7	0.1	1.1	1	0	0	1	1	1	0	lef-2
MazE_antitoxin	PF04014.18	gi|227828957|ref|YP_002830737.1|	-	2.3e-11	43.3	0.2	3.4e-11	42.8	0.2	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
CTP-dep_RFKase	PF01982.16	gi|227828957|ref|YP_002830737.1|	-	0.068	13.3	0.1	0.12	12.5	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF120
Thump_like	PF18096.1	gi|227828957|ref|YP_002830737.1|	-	0.078	12.9	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	THUMP	domain-like
AbrB-like	PF14250.6	gi|227828957|ref|YP_002830737.1|	-	0.092	12.8	0.1	0.17	12.0	0.1	1.4	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
DUF2138	PF09909.9	gi|227828958|ref|YP_002830738.1|	-	0.018	13.4	0.0	0.02	13.2	0.0	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2138)
Peptidase_M61	PF05299.12	gi|227828959|ref|YP_002830739.1|	-	7.4e-32	110.2	0.2	1.1e-31	109.6	0.2	1.3	1	0	0	1	1	1	1	M61	glycyl	aminopeptidase
Peptidase_M61_N	PF17899.1	gi|227828959|ref|YP_002830739.1|	-	4.6e-11	43.1	0.1	7.4e-10	39.1	0.1	2.2	1	1	0	1	1	1	1	Peptidase	M61	N-terminal	domain
PDZ_6	PF17820.1	gi|227828959|ref|YP_002830739.1|	-	1.6e-07	31.1	0.1	1.7e-06	27.7	0.0	2.4	2	0	0	2	2	2	1	PDZ	domain
PDZ	PF00595.24	gi|227828959|ref|YP_002830739.1|	-	0.00013	22.3	0.2	0.00028	21.2	0.2	1.5	1	0	0	1	1	1	1	PDZ	domain
PDZ_2	PF13180.6	gi|227828959|ref|YP_002830739.1|	-	0.0016	18.8	0.0	0.0034	17.7	0.0	1.5	1	0	0	1	1	1	1	PDZ	domain
AAA_lid_1	PF17857.1	gi|227828959|ref|YP_002830739.1|	-	0.07	13.4	0.8	0.16	12.2	0.4	1.8	1	1	1	2	2	2	0	AAA+	lid	domain
Fer4	PF00037.27	gi|227828960|ref|YP_002830740.1|	-	4.2e-14	51.7	13.9	4.3e-07	29.5	6.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|227828960|ref|YP_002830740.1|	-	4.2e-09	36.4	6.0	5.7e-09	36.0	6.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828960|ref|YP_002830740.1|	-	3.4e-08	34.0	8.5	9.7e-08	32.5	8.9	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828960|ref|YP_002830740.1|	-	3.4e-08	33.5	7.0	6.2e-08	32.6	7.1	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|227828960|ref|YP_002830740.1|	-	1.5e-07	31.5	6.3	2.2e-07	30.9	6.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828960|ref|YP_002830740.1|	-	2.4e-07	30.6	13.7	0.00025	21.0	5.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|227828960|ref|YP_002830740.1|	-	9.3e-06	26.1	9.8	0.01	16.4	0.3	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|227828960|ref|YP_002830740.1|	-	4.4e-05	23.8	6.8	0.0002	21.7	7.1	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828960|ref|YP_002830740.1|	-	4.5e-05	24.3	8.9	0.0085	17.0	3.1	2.2	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|227828960|ref|YP_002830740.1|	-	7.3e-05	23.0	8.1	0.045	14.3	3.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|227828960|ref|YP_002830740.1|	-	9.8e-05	22.2	10.9	0.03	14.4	4.3	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|227828960|ref|YP_002830740.1|	-	0.00011	22.6	1.1	0.33	11.5	0.5	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|227828960|ref|YP_002830740.1|	-	0.00018	22.2	13.8	0.012	16.5	6.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|227828960|ref|YP_002830740.1|	-	0.00077	19.6	0.8	0.00086	19.4	0.8	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_18	PF13746.6	gi|227828960|ref|YP_002830740.1|	-	0.0035	17.5	9.4	0.016	15.4	2.9	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|227828960|ref|YP_002830740.1|	-	0.035	14.8	10.7	0.75	10.6	0.1	2.7	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|227828960|ref|YP_002830740.1|	-	2.3	9.1	7.8	9.8	7.1	2.4	2.1	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
HTH_34	PF13601.6	gi|227828961|ref|YP_002830741.1|	-	0.0014	18.8	0.5	0.002	18.2	0.5	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|227828961|ref|YP_002830741.1|	-	0.0091	15.9	0.7	0.027	14.3	0.4	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.10	gi|227828961|ref|YP_002830741.1|	-	0.018	14.9	0.2	0.026	14.5	0.2	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_20	PF12840.7	gi|227828961|ref|YP_002830741.1|	-	0.026	14.6	0.0	0.045	13.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|227828961|ref|YP_002830741.1|	-	0.043	13.7	0.0	0.085	12.8	0.0	1.4	1	0	0	1	1	1	0	MarR	family
DUF1495	PF07381.11	gi|227828961|ref|YP_002830741.1|	-	0.047	13.5	0.2	0.4	10.5	0.1	2.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
Peptidase_S66C	PF17676.1	gi|227828961|ref|YP_002830741.1|	-	0.14	12.7	0.3	0.28	11.7	0.3	1.5	1	1	0	1	1	1	0	LD-carboxypeptidase	C-terminal	domain
DAGK_acc	PF00609.19	gi|227828962|ref|YP_002830742.1|	-	0.061	13.6	0.2	0.1	12.9	0.2	1.3	1	0	0	1	1	1	0	Diacylglycerol	kinase	accessory	domain
SfsA	PF03749.13	gi|227828963|ref|YP_002830743.1|	-	6.9e-35	119.9	0.0	1e-34	119.4	0.0	1.3	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
SfsA_N	PF17746.1	gi|227828963|ref|YP_002830743.1|	-	7.8e-15	54.8	0.0	1.8e-14	53.7	0.0	1.6	1	0	0	1	1	1	1	SfsA	N-terminal	OB	domain
eIF-1a	PF01176.19	gi|227828963|ref|YP_002830743.1|	-	0.14	12.0	0.0	0.3	10.9	0.0	1.6	1	0	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
DUF929	PF06053.11	gi|227828964|ref|YP_002830744.1|	-	3.3e-79	265.7	16.6	3.7e-79	265.5	16.6	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
ODV-E18	PF10717.9	gi|227828964|ref|YP_002830744.1|	-	0.04	13.8	1.0	0.04	13.8	1.0	1.9	2	0	0	2	2	2	0	Occlusion-derived	virus	envelope	protein	ODV-E18
VIT1	PF01988.19	gi|227828966|ref|YP_002830746.1|	-	5.8e-39	134.2	5.6	5.8e-39	134.2	5.6	1.7	2	0	0	2	2	2	1	VIT	family
Rubrerythrin	PF02915.17	gi|227828966|ref|YP_002830746.1|	-	1.5e-08	35.1	5.6	2.7e-08	34.3	5.6	1.3	1	0	0	1	1	1	1	Rubrerythrin
FA_desaturase_2	PF03405.14	gi|227828966|ref|YP_002830746.1|	-	0.093	11.6	0.0	0.15	10.9	0.0	1.2	1	0	0	1	1	1	0	Fatty	acid	desaturase
SipA_VBS	PF17985.1	gi|227828966|ref|YP_002830746.1|	-	0.16	11.9	1.3	0.43	10.6	1.3	1.8	1	0	0	1	1	1	0	SipA	vinculin	binding	site
DUF3311	PF11755.8	gi|227828968|ref|YP_002830748.1|	-	0.2	11.6	0.4	0.2	11.6	0.4	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3311)
Nitroreductase	PF00881.24	gi|227828969|ref|YP_002830749.1|	-	4.7e-34	117.9	0.0	5.8e-34	117.6	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|227828969|ref|YP_002830749.1|	-	2.2e-07	30.6	1.4	0.024	14.2	0.0	3.2	2	1	1	3	3	3	3	Putative	TM	nitroreductase
DUF1104	PF06518.11	gi|227828969|ref|YP_002830749.1|	-	0.0035	17.7	0.0	0.007	16.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1104)
SspH	PF08141.12	gi|227828969|ref|YP_002830749.1|	-	0.03	14.4	0.2	2.6	8.2	0.0	2.4	2	0	0	2	2	2	0	Small	acid-soluble	spore	protein	H	family
Pyr_redox_2	PF07992.14	gi|227828970|ref|YP_002830750.1|	-	2.1e-51	174.9	0.2	3.3e-51	174.3	0.2	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|227828970|ref|YP_002830750.1|	-	2.3e-21	76.2	2.6	6.2e-16	58.7	0.2	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|227828970|ref|YP_002830750.1|	-	5.5e-16	58.8	0.3	3.1e-15	56.4	0.3	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
GIDA	PF01134.22	gi|227828970|ref|YP_002830750.1|	-	1.2e-15	57.6	1.8	1.6e-06	27.5	0.5	4.2	3	1	0	3	3	3	3	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|227828970|ref|YP_002830750.1|	-	2.1e-14	53.5	2.1	2.9e-10	39.9	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|227828970|ref|YP_002830750.1|	-	3.6e-08	33.5	0.4	0.015	15.5	0.1	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|227828970|ref|YP_002830750.1|	-	1.7e-07	31.0	0.3	0.00045	19.7	0.0	2.4	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|227828970|ref|YP_002830750.1|	-	4.6e-07	29.4	1.0	0.011	15.0	0.1	2.8	3	0	0	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|227828970|ref|YP_002830750.1|	-	1.4e-06	28.2	2.8	0.021	14.4	0.0	4.0	3	1	0	4	4	4	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|227828970|ref|YP_002830750.1|	-	4e-06	26.2	5.2	3.1e-05	23.2	0.1	3.3	4	0	0	4	4	4	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|227828970|ref|YP_002830750.1|	-	1.3e-05	24.1	3.6	0.0023	16.7	0.2	3.8	3	1	1	4	4	4	1	HI0933-like	protein
Thi4	PF01946.17	gi|227828970|ref|YP_002830750.1|	-	0.00037	19.8	1.7	0.0024	17.1	0.0	2.9	3	1	0	3	3	3	1	Thi4	family
NAD_binding_9	PF13454.6	gi|227828970|ref|YP_002830750.1|	-	0.00044	20.3	0.1	5.5	7.0	0.0	3.3	3	0	0	3	3	3	1	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|227828970|ref|YP_002830750.1|	-	0.011	15.0	0.1	0.22	10.8	0.0	2.5	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.18	gi|227828970|ref|YP_002830750.1|	-	0.026	14.8	2.0	7.8	6.8	0.1	3.3	4	0	0	4	4	4	0	TrkA-N	domain
PP_kinase_C_1	PF17941.1	gi|227828970|ref|YP_002830750.1|	-	0.075	12.6	0.1	0.35	10.4	0.1	1.9	1	1	0	2	2	2	0	Polyphosphate	kinase	C-terminal	domain	1
Amino_oxidase	PF01593.24	gi|227828970|ref|YP_002830750.1|	-	0.083	12.2	0.3	16	4.6	0.0	3.1	3	0	0	3	3	3	0	Flavin	containing	amine	oxidoreductase
MFS_1	PF07690.16	gi|227828971|ref|YP_002830751.1|	-	9.3e-16	57.7	57.6	3.6e-14	52.5	57.8	2.1	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|227828971|ref|YP_002830751.1|	-	5.5e-14	51.9	38.4	9.5e-11	41.2	15.9	2.1	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
TNFR_16_TM	PF18422.1	gi|227828971|ref|YP_002830751.1|	-	0.25	11.4	3.6	14	5.8	0.6	3.4	2	0	0	2	2	2	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
Kinesin_assoc	PF16183.5	gi|227828972|ref|YP_002830752.1|	-	0.029	14.5	0.0	0.032	14.4	0.0	1.2	1	0	0	1	1	1	0	Kinesin-associated
CENP-M	PF11111.8	gi|227828972|ref|YP_002830752.1|	-	0.09	12.0	0.1	0.12	11.6	0.1	1.1	1	0	0	1	1	1	0	Centromere	protein	M	(CENP-M)
Amidohydro_2	PF04909.14	gi|227828974|ref|YP_002830754.1|	-	8.1e-35	121.0	0.0	9.7e-35	120.7	0.0	1.1	1	0	0	1	1	1	1	Amidohydrolase
TatD_DNase	PF01026.21	gi|227828974|ref|YP_002830754.1|	-	0.0015	17.9	0.0	0.0022	17.4	0.0	1.3	1	0	0	1	1	1	1	TatD	related	DNase
YfmQ	PF10787.9	gi|227828974|ref|YP_002830754.1|	-	0.018	14.8	0.4	1.3	8.8	0.0	2.9	3	0	0	3	3	3	0	Uncharacterised	protein	from	bacillus	cereus	group
Ovate	PF04844.13	gi|227828974|ref|YP_002830754.1|	-	0.055	13.5	0.2	0.15	12.1	0.2	1.7	1	0	0	1	1	1	0	Transcriptional	repressor,	ovate
PNGaseA	PF12222.8	gi|227828975|ref|YP_002830755.1|	-	7.3e-32	110.8	4.1	4.6e-30	104.8	4.1	2.2	1	1	0	1	1	1	1	Peptide	N-acetyl-beta-D-glucosaminyl	asparaginase	amidase	A
Pro-kuma_activ	PF09286.11	gi|227828976|ref|YP_002830756.1|	-	1e-10	42.1	0.0	1.9e-10	41.2	0.0	1.4	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
MG2	PF01835.19	gi|227828976|ref|YP_002830756.1|	-	0.0039	17.6	0.0	0.76	10.3	0.0	3.0	2	0	0	2	2	2	1	MG2	domain
Peptidase_S8	PF00082.22	gi|227828976|ref|YP_002830756.1|	-	0.0044	16.3	0.4	0.012	14.9	0.4	1.6	1	0	0	1	1	1	1	Subtilase	family
YjgF_endoribonc	PF14588.6	gi|227828976|ref|YP_002830756.1|	-	0.18	12.0	0.1	0.48	10.5	0.1	1.7	1	0	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
7kD_DNA_binding	PF02294.18	gi|227828977|ref|YP_002830757.1|	-	1.4e-39	133.9	4.0	1.6e-39	133.7	4.0	1.0	1	0	0	1	1	1	1	7kD	DNA-binding	domain
zf-C2H2_4	PF13894.6	gi|227828978|ref|YP_002830758.1|	-	0.0087	16.8	0.7	0.02	15.7	0.7	1.6	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|227828978|ref|YP_002830758.1|	-	0.03	14.8	0.3	0.065	13.7	0.3	1.6	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf_ZIC	PF18366.1	gi|227828978|ref|YP_002830758.1|	-	0.037	14.1	0.1	0.058	13.5	0.1	1.3	1	0	0	1	1	1	0	Zic	proteins	zinc	finger	domain
V_ATPase_I_N	PF18670.1	gi|227828978|ref|YP_002830758.1|	-	0.075	13.4	0.0	0.1	13.0	0.0	1.2	1	0	0	1	1	1	0	V-type	ATPase	subunit	I,	N-terminal	domain
AA_permease_2	PF13520.6	gi|227828979|ref|YP_002830759.1|	-	4.3e-19	68.7	60.8	6.1e-19	68.2	60.8	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|227828979|ref|YP_002830759.1|	-	1.4e-07	30.5	46.8	2.3e-07	29.8	46.8	1.3	1	0	0	1	1	1	1	Amino	acid	permease
Col_cuticle_N	PF01484.17	gi|227828979|ref|YP_002830759.1|	-	0.37	10.9	0.1	0.37	10.9	0.1	5.3	7	0	0	7	7	7	0	Nematode	cuticle	collagen	N-terminal	domain
FixG_C	PF11614.8	gi|227828983|ref|YP_002830763.1|	-	0.04	14.1	0.0	0.053	13.7	0.0	1.2	1	0	0	1	1	1	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
E1_DerP2_DerF2	PF02221.15	gi|227828983|ref|YP_002830763.1|	-	0.16	12.4	0.1	0.25	11.8	0.1	1.3	1	0	0	1	1	1	0	ML	domain
DUF4956	PF16316.5	gi|227828983|ref|YP_002830763.1|	-	0.75	9.4	5.4	0.62	9.7	3.9	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4956)
CARDB	PF07705.11	gi|227828983|ref|YP_002830763.1|	-	1	9.7	6.0	3.8	7.8	6.0	1.8	1	1	0	1	1	1	0	CARDB
DUF1776	PF08643.10	gi|227828984|ref|YP_002830764.1|	-	0.029	13.8	0.1	0.053	12.9	0.1	1.4	1	0	0	1	1	1	0	Fungal	family	of	unknown	function	(DUF1776)
FixG_C	PF11614.8	gi|227828985|ref|YP_002830765.1|	-	0.04	14.1	0.0	0.053	13.7	0.0	1.2	1	0	0	1	1	1	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
E1_DerP2_DerF2	PF02221.15	gi|227828985|ref|YP_002830765.1|	-	0.16	12.4	0.1	0.25	11.8	0.1	1.3	1	0	0	1	1	1	0	ML	domain
DUF4956	PF16316.5	gi|227828985|ref|YP_002830765.1|	-	0.75	9.4	5.4	0.62	9.7	3.9	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4956)
CARDB	PF07705.11	gi|227828985|ref|YP_002830765.1|	-	1	9.7	6.0	3.8	7.8	6.0	1.8	1	1	0	1	1	1	0	CARDB
DUF2203	PF09969.9	gi|227828986|ref|YP_002830766.1|	-	8.9e-29	100.7	0.1	6.8e-28	97.8	0.1	1.9	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2203)
Ribosomal_S20p	PF01649.18	gi|227828986|ref|YP_002830766.1|	-	0.18	12.5	0.1	0.26	12.0	0.1	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S20
DUF2114	PF09887.9	gi|227828986|ref|YP_002830766.1|	-	0.21	10.1	0.0	0.23	9.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2114)
Ald_Xan_dh_C2	PF02738.18	gi|227828987|ref|YP_002830767.1|	-	1.4e-155	518.9	0.0	1.7e-155	518.6	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|227828987|ref|YP_002830767.1|	-	5.7e-32	110.3	0.1	1.6e-31	108.9	0.1	1.8	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Tenui_NS4	PF03300.13	gi|227828987|ref|YP_002830767.1|	-	0.092	12.2	0.0	11	5.4	0.0	2.2	2	0	0	2	2	2	0	Tenuivirus	non-structural,	movement	protein	NS4
Rhodanese	PF00581.20	gi|227828988|ref|YP_002830768.1|	-	4.1e-13	49.8	0.0	6e-13	49.2	0.0	1.2	1	0	0	1	1	1	1	Rhodanese-like	domain
Peptidase_M1	PF01433.20	gi|227828990|ref|YP_002830770.1|	-	3.6e-82	275.2	3.1	5.6e-82	274.5	3.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M1	domain
Peptidase_M1_N	PF17900.1	gi|227828990|ref|YP_002830770.1|	-	5.5e-35	121.2	0.2	1.1e-34	120.2	0.1	1.6	2	0	0	2	2	2	1	Peptidase	M1	N-terminal	domain
ERAP1_C	PF11838.8	gi|227828990|ref|YP_002830770.1|	-	5.8e-30	104.9	0.1	9.3e-30	104.2	0.1	1.3	1	0	0	1	1	1	1	ERAP1-like	C-terminal	domain
Aminopep	PF10023.9	gi|227828990|ref|YP_002830770.1|	-	0.004	16.6	0.4	0.02	14.2	0.1	2.0	2	0	0	2	2	2	1	Putative	aminopeptidase
AP_endonuc_2	PF01261.24	gi|227828992|ref|YP_002830772.1|	-	2.4e-27	95.7	0.1	3.1e-27	95.4	0.1	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UvdE	PF03851.14	gi|227828992|ref|YP_002830772.1|	-	0.0015	17.9	0.0	0.0018	17.6	0.0	1.2	1	0	0	1	1	1	1	UV-endonuclease	UvdE
Amidohydro_1	PF01979.20	gi|227828992|ref|YP_002830772.1|	-	0.031	13.6	0.3	5.9	6.1	0.1	2.2	1	1	1	2	2	2	0	Amidohydrolase	family
DeoC	PF01791.9	gi|227828992|ref|YP_002830772.1|	-	0.068	12.8	0.2	0.095	12.3	0.2	1.3	1	0	0	1	1	1	0	DeoC/LacD	family	aldolase
Hydrolase_3	PF08282.12	gi|227828993|ref|YP_002830773.1|	-	1.5e-25	90.4	0.3	3.2e-16	59.8	0.2	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|227828993|ref|YP_002830773.1|	-	1.2e-06	28.2	0.0	0.0046	16.5	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
BsuBI_PstI_RE	PF06616.11	gi|227828993|ref|YP_002830773.1|	-	0.017	14.4	0.9	12	5.1	0.1	3.0	2	1	1	3	3	3	0	BsuBI/PstI	restriction	endonuclease	domain
HAD	PF12710.7	gi|227828993|ref|YP_002830773.1|	-	0.044	14.2	0.0	6.1	7.2	0.0	2.8	2	1	1	3	3	3	0	haloacid	dehalogenase-like	hydrolase
Cas_Cas6	PF01881.16	gi|227828993|ref|YP_002830773.1|	-	0.13	12.9	0.8	0.19	12.3	0.8	1.4	1	1	0	1	1	1	0	CRISPR	associated	protein	Cas6
HAD_2	PF13419.6	gi|227828994|ref|YP_002830774.1|	-	2e-17	63.9	0.0	2.8e-17	63.4	0.0	1.3	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|227828994|ref|YP_002830774.1|	-	8.1e-15	55.7	0.0	3e-14	53.8	0.0	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|227828994|ref|YP_002830774.1|	-	1.7e-05	24.7	0.0	5.1e-05	23.3	0.0	1.8	2	0	0	2	2	2	1	HAD-hyrolase-like
ATPgrasp_N	PF18130.1	gi|227828994|ref|YP_002830774.1|	-	0.014	15.9	0.1	1.9	9.1	0.0	3.3	3	1	1	4	4	4	0	ATP-grasp	N-terminal	domain
HAD	PF12710.7	gi|227828994|ref|YP_002830774.1|	-	0.037	14.4	0.0	0.05	14.0	0.0	1.4	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
HypA	PF01155.19	gi|227828995|ref|YP_002830775.1|	-	0.00015	21.8	0.1	0.00018	21.5	0.1	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
HTH_20	PF12840.7	gi|227828995|ref|YP_002830775.1|	-	0.00021	21.3	0.0	0.00034	20.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn-ribbon_8	PF09723.10	gi|227828995|ref|YP_002830775.1|	-	0.0044	17.1	2.4	0.0095	16.0	2.4	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
HTH_11	PF08279.12	gi|227828995|ref|YP_002830775.1|	-	0.018	15.0	0.1	0.027	14.4	0.1	1.4	1	1	0	1	1	1	0	HTH	domain
NRDD	PF13597.6	gi|227828995|ref|YP_002830775.1|	-	0.033	13.0	0.3	0.038	12.8	0.3	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
CENP-B_N	PF04218.13	gi|227828995|ref|YP_002830775.1|	-	0.041	13.5	0.5	0.074	12.7	0.1	1.7	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|227828995|ref|YP_002830775.1|	-	0.046	13.5	0.0	0.064	13.0	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
TF_Zn_Ribbon	PF08271.12	gi|227828995|ref|YP_002830775.1|	-	0.079	12.5	1.4	4.8	6.8	0.4	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-H2C2_2	PF13465.6	gi|227828995|ref|YP_002830775.1|	-	0.09	13.2	2.1	0.82	10.2	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
Cys_rich_CPCC	PF14206.6	gi|227828995|ref|YP_002830775.1|	-	0.1	12.4	0.6	0.16	11.8	0.6	1.3	1	0	0	1	1	1	0	Cysteine-rich	CPCC
Zn_ribbon_SprT	PF17283.2	gi|227828995|ref|YP_002830775.1|	-	0.13	12.1	4.3	0.15	12.0	3.1	1.7	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
DUF1451	PF07295.11	gi|227828995|ref|YP_002830775.1|	-	0.24	11.4	1.6	0.31	11.1	1.3	1.3	1	1	0	1	1	1	0	Zinc-ribbon	containing	domain
ADK_lid	PF05191.14	gi|227828995|ref|YP_002830775.1|	-	0.37	10.8	4.5	0.34	10.9	2.6	1.8	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Rubredoxin	PF00301.20	gi|227828995|ref|YP_002830775.1|	-	1.7	8.7	4.6	13	5.9	0.2	2.2	1	1	1	2	2	2	0	Rubredoxin
Rubredoxin_2	PF18073.1	gi|227828995|ref|YP_002830775.1|	-	2.4	8.0	7.3	1.9	8.3	0.7	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-trcl	PF13451.6	gi|227828995|ref|YP_002830775.1|	-	3.5	7.6	7.9	2.8	7.9	0.9	2.3	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
RmlD_sub_bind	PF04321.17	gi|227828996|ref|YP_002830776.1|	-	3.7e-15	55.8	0.0	5.2e-15	55.3	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
FAD_binding_4	PF01565.23	gi|227828997|ref|YP_002830777.1|	-	1e-32	112.8	0.0	2.3e-32	111.6	0.0	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|227828997|ref|YP_002830777.1|	-	2.1e-08	34.6	2.0	3.9e-08	33.7	2.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|227828997|ref|YP_002830777.1|	-	1.3e-07	32.0	0.9	2.3e-07	31.2	0.9	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|227828997|ref|YP_002830777.1|	-	1.7e-05	25.3	3.9	3.8e-05	24.2	3.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|227828997|ref|YP_002830777.1|	-	0.00016	21.8	5.9	0.0017	18.5	6.9	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|227828997|ref|YP_002830777.1|	-	0.0002	22.2	3.3	0.00057	20.8	3.3	1.9	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|227828997|ref|YP_002830777.1|	-	0.00076	19.7	2.2	0.23	11.7	0.3	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|227828997|ref|YP_002830777.1|	-	0.001	19.1	9.7	0.018	15.1	10.5	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|227828997|ref|YP_002830777.1|	-	0.0054	16.7	1.5	0.0054	16.7	1.5	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
FAD-oxidase_C	PF02913.19	gi|227828997|ref|YP_002830777.1|	-	0.0092	15.6	0.1	0.19	11.3	0.0	2.5	2	1	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
Fer4	PF00037.27	gi|227828997|ref|YP_002830777.1|	-	0.01	15.6	15.0	0.045	13.6	2.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|227828997|ref|YP_002830777.1|	-	0.051	13.7	8.6	0.43	10.7	1.0	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
CelTOS	PF18659.1	gi|227828997|ref|YP_002830777.1|	-	0.39	11.1	7.0	0.087	13.3	0.4	2.7	1	1	1	2	2	2	0	Cell-traversal	protein	for	ookinetes	and	sporozoites
Fer4_20	PF14691.6	gi|227828997|ref|YP_002830777.1|	-	0.48	10.2	2.3	21	4.9	0.4	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_22	PF17179.4	gi|227828997|ref|YP_002830777.1|	-	2.7	8.9	7.5	15	6.5	0.5	3.0	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|227828997|ref|YP_002830777.1|	-	3.6	7.8	15.6	0.027	14.5	2.9	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
HIT	PF01230.23	gi|227828998|ref|YP_002830778.1|	-	3.3e-25	88.7	0.0	4.6e-25	88.2	0.0	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|227828998|ref|YP_002830778.1|	-	5.4e-13	49.4	0.1	8.8e-13	48.7	0.0	1.4	1	1	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|227828998|ref|YP_002830778.1|	-	0.014	15.2	0.1	0.02	14.7	0.1	1.4	1	1	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
Asp_protease_2	PF13650.6	gi|227828999|ref|YP_002830779.1|	-	0.00014	22.4	0.0	0.00019	22.0	0.0	1.4	1	1	0	1	1	1	1	Aspartyl	protease
gag-asp_proteas	PF13975.6	gi|227828999|ref|YP_002830779.1|	-	0.016	15.7	0.0	0.023	15.2	0.0	1.2	1	0	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
RHH_1	PF01402.21	gi|227829000|ref|YP_002830780.1|	-	0.00045	20.0	0.1	0.00096	19.0	0.1	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|227829000|ref|YP_002830780.1|	-	0.14	12.2	0.1	0.22	11.5	0.1	1.3	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
Pox_A9	PF04835.12	gi|227829002|ref|YP_002830782.1|	-	0.35	11.0	0.3	0.35	11.0	0.3	2.6	3	1	1	4	4	4	0	A9	protein	conserved	region
SVM_signal	PF12113.8	gi|227829002|ref|YP_002830782.1|	-	0.75	9.8	7.5	4.9	7.1	7.5	2.4	1	0	0	1	1	1	0	SVM	protein	signal	sequence
Reticulon	PF02453.17	gi|227829002|ref|YP_002830782.1|	-	1.5	8.7	9.7	2	8.4	0.2	3.1	2	1	0	2	2	2	0	Reticulon
NUDIX	PF00293.28	gi|227829003|ref|YP_002830783.1|	-	9.3e-14	51.6	0.0	1.1e-13	51.3	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
Chlor_dismutase	PF06778.12	gi|227829005|ref|YP_002830785.1|	-	4.7e-48	163.4	0.9	5e-48	163.3	0.2	1.3	1	1	0	1	1	1	1	Chlorite	dismutase
GYD	PF08734.11	gi|227829005|ref|YP_002830785.1|	-	0.16	11.9	0.0	1.5	8.8	0.0	2.2	2	0	0	2	2	2	0	GYD	domain
DUF5474	PF17568.2	gi|227829006|ref|YP_002830786.1|	-	0.004	17.2	0.1	0.062	13.4	0.0	2.9	2	1	0	2	2	2	1	Family	of	unknown	function	(DUF5474)
CNP_C_terminal	PF17839.1	gi|227829006|ref|YP_002830786.1|	-	0.083	13.6	0.6	0.26	12.0	0.0	2.1	2	0	0	2	2	2	0	C-terminal	domain	of	cyclic	nucleotide	phosphodiesterase
Drf_GBD	PF06371.13	gi|227829006|ref|YP_002830786.1|	-	0.11	12.0	0.0	0.26	10.8	0.0	1.5	1	0	0	1	1	1	0	Diaphanous	GTPase-binding	Domain
NTPase_1	PF03266.15	gi|227829007|ref|YP_002830787.1|	-	8.5e-52	175.5	0.4	1e-51	175.2	0.4	1.1	1	0	0	1	1	1	1	NTPase
AAA	PF00004.29	gi|227829007|ref|YP_002830787.1|	-	6.2e-06	26.7	0.0	8.8e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|227829007|ref|YP_002830787.1|	-	1e-05	25.9	0.0	0.0005	20.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|227829007|ref|YP_002830787.1|	-	6.5e-05	23.2	0.0	0.00016	21.9	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|227829007|ref|YP_002830787.1|	-	0.00026	20.1	0.0	0.00056	19.0	0.0	1.6	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|227829007|ref|YP_002830787.1|	-	0.00032	20.5	0.0	0.00072	19.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|227829007|ref|YP_002830787.1|	-	0.00061	19.6	0.0	0.41	10.4	0.0	2.3	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ATPase_2	PF01637.18	gi|227829007|ref|YP_002830787.1|	-	0.00072	19.5	0.6	0.0016	18.4	0.5	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|227829007|ref|YP_002830787.1|	-	0.00084	19.9	0.0	0.0012	19.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|227829007|ref|YP_002830787.1|	-	0.0011	19.0	0.2	0.0024	17.9	0.2	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_16	PF13191.6	gi|227829007|ref|YP_002830787.1|	-	0.0012	19.3	0.0	0.002	18.6	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_26	PF13500.6	gi|227829007|ref|YP_002830787.1|	-	0.0028	17.5	0.0	0.0045	16.8	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.14	gi|227829007|ref|YP_002830787.1|	-	0.0037	17.2	0.0	0.01	15.8	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_14	PF13173.6	gi|227829007|ref|YP_002830787.1|	-	0.0056	16.7	0.3	0.13	12.3	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|227829007|ref|YP_002830787.1|	-	0.0063	15.8	0.1	0.0064	15.8	0.1	1.3	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_7	PF12775.7	gi|227829007|ref|YP_002830787.1|	-	0.007	15.9	0.0	0.021	14.3	0.0	1.7	2	0	0	2	2	1	1	P-loop	containing	dynein	motor	region
DAP3	PF10236.9	gi|227829007|ref|YP_002830787.1|	-	0.0075	15.5	0.0	0.016	14.4	0.0	1.5	1	0	0	1	1	1	1	Mitochondrial	ribosomal	death-associated	protein	3
IstB_IS21	PF01695.17	gi|227829007|ref|YP_002830787.1|	-	0.0086	15.8	0.0	1.8	8.3	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|227829007|ref|YP_002830787.1|	-	0.013	15.7	0.0	0.016	15.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|227829007|ref|YP_002830787.1|	-	0.018	15.1	0.1	0.54	10.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Pox_A32	PF04665.12	gi|227829007|ref|YP_002830787.1|	-	0.018	14.5	0.1	0.21	11.0	0.0	2.0	2	0	0	2	2	2	0	Poxvirus	A32	protein
ABC_tran	PF00005.27	gi|227829007|ref|YP_002830787.1|	-	0.02	15.4	0.6	0.078	13.5	0.1	2.1	2	1	1	3	3	2	0	ABC	transporter
APS_kinase	PF01583.20	gi|227829007|ref|YP_002830787.1|	-	0.021	14.7	0.0	0.04	13.8	0.0	1.5	2	0	0	2	2	1	0	Adenylylsulphate	kinase
NACHT	PF05729.12	gi|227829007|ref|YP_002830787.1|	-	0.024	14.5	0.0	0.04	13.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
FeoB_N	PF02421.18	gi|227829007|ref|YP_002830787.1|	-	0.029	13.9	0.3	0.049	13.2	0.2	1.5	1	1	0	1	1	1	0	Ferrous	iron	transport	protein	B
Arf	PF00025.21	gi|227829007|ref|YP_002830787.1|	-	0.031	13.7	0.3	0.11	11.9	0.0	1.9	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
ATPase	PF06745.13	gi|227829007|ref|YP_002830787.1|	-	0.032	13.6	0.2	0.06	12.7	0.2	1.6	1	1	0	1	1	1	0	KaiC
cobW	PF02492.19	gi|227829007|ref|YP_002830787.1|	-	0.037	13.6	0.1	0.11	12.1	0.0	1.8	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.23	gi|227829007|ref|YP_002830787.1|	-	0.039	14.0	1.2	0.12	12.5	1.2	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|227829007|ref|YP_002830787.1|	-	0.045	12.9	0.0	0.072	12.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_24	PF13479.6	gi|227829007|ref|YP_002830787.1|	-	0.052	13.3	0.2	0.14	11.8	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|227829007|ref|YP_002830787.1|	-	0.07	12.3	0.0	0.21	10.7	0.0	1.6	2	0	0	2	2	2	0	Anion-transporting	ATPase
RNA_helicase	PF00910.22	gi|227829007|ref|YP_002830787.1|	-	0.074	13.5	0.0	0.26	11.7	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
ResIII	PF04851.15	gi|227829007|ref|YP_002830787.1|	-	0.084	12.9	0.1	0.25	11.4	0.0	1.7	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Sigma54_activat	PF00158.26	gi|227829007|ref|YP_002830787.1|	-	0.12	12.1	0.0	0.94	9.2	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|227829007|ref|YP_002830787.1|	-	0.12	12.1	0.0	0.15	11.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
Roc	PF08477.13	gi|227829007|ref|YP_002830787.1|	-	0.14	12.4	0.0	0.25	11.6	0.0	1.5	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_29	PF13555.6	gi|227829007|ref|YP_002830787.1|	-	0.17	11.6	0.1	0.33	10.7	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|227829007|ref|YP_002830787.1|	-	0.21	12.0	1.4	0.43	11.1	1.3	1.5	1	1	0	1	1	1	0	AAA	domain
NAD_synthase	PF02540.17	gi|227829008|ref|YP_002830788.1|	-	4.4e-72	242.1	0.0	5.2e-72	241.9	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|227829008|ref|YP_002830788.1|	-	5.8e-05	22.1	0.0	0.0039	16.0	0.0	2.3	2	0	0	2	2	2	2	tRNA	methyl	transferase
Sigma70_r4	PF04545.16	gi|227829008|ref|YP_002830788.1|	-	0.019	14.5	0.1	0.064	12.8	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
CN_hydrolase	PF00795.22	gi|227829009|ref|YP_002830789.1|	-	7.6e-23	81.2	0.0	9.3e-23	80.9	0.0	1.0	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
DUF5603	PF18231.1	gi|227829009|ref|YP_002830789.1|	-	0.074	13.4	0.5	0.14	12.5	0.5	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5603)
DUF1298	PF06974.13	gi|227829009|ref|YP_002830789.1|	-	0.18	11.8	0.0	0.39	10.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1298)
HTH_5	PF01022.20	gi|227829011|ref|YP_002830791.1|	-	6.2e-12	45.2	0.0	9.9e-12	44.5	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|227829011|ref|YP_002830791.1|	-	2e-09	37.3	0.0	3.1e-09	36.8	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|227829011|ref|YP_002830791.1|	-	6.5e-08	32.3	0.1	1e-07	31.7	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|227829011|ref|YP_002830791.1|	-	1.5e-05	24.5	0.1	5.1e-05	22.7	0.1	1.9	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|227829011|ref|YP_002830791.1|	-	4.3e-05	23.4	2.8	0.015	15.2	0.4	2.1	1	1	1	2	2	2	2	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|227829011|ref|YP_002830791.1|	-	7.2e-05	22.6	0.1	0.00011	22.0	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
ArsR	PF09824.9	gi|227829011|ref|YP_002830791.1|	-	0.00051	19.7	0.3	0.0006	19.4	0.3	1.1	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
MarR_2	PF12802.7	gi|227829011|ref|YP_002830791.1|	-	0.00062	19.6	0.0	0.00079	19.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_12	PF08461.10	gi|227829011|ref|YP_002830791.1|	-	0.00086	19.2	0.2	0.0021	18.0	0.2	1.9	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
MarR	PF01047.22	gi|227829011|ref|YP_002830791.1|	-	0.0015	18.4	0.0	0.0023	17.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Phage_rep_org_N	PF09681.10	gi|227829011|ref|YP_002830791.1|	-	0.0087	16.0	0.1	0.01	15.8	0.1	1.2	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Penicillinase_R	PF03965.16	gi|227829011|ref|YP_002830791.1|	-	0.012	15.9	0.2	0.016	15.5	0.2	1.4	1	1	0	1	1	1	0	Penicillinase	repressor
Fe_dep_repress	PF01325.19	gi|227829011|ref|YP_002830791.1|	-	0.014	15.6	1.0	0.017	15.3	0.0	1.6	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
LexA_DNA_bind	PF01726.16	gi|227829011|ref|YP_002830791.1|	-	0.015	15.0	0.0	0.022	14.5	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|227829011|ref|YP_002830791.1|	-	0.016	15.0	0.0	0.026	14.3	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_10	PF04967.12	gi|227829011|ref|YP_002830791.1|	-	0.016	15.0	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF2089	PF09862.9	gi|227829011|ref|YP_002830791.1|	-	0.026	14.5	0.5	0.13	12.3	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2089)
HTH_28	PF13518.6	gi|227829011|ref|YP_002830791.1|	-	0.036	14.2	0.0	0.077	13.1	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
MazG-like	PF12643.7	gi|227829011|ref|YP_002830791.1|	-	0.039	14.2	0.1	0.072	13.3	0.0	1.6	1	1	0	1	1	1	0	MazG-like	family
GerE	PF00196.19	gi|227829011|ref|YP_002830791.1|	-	0.099	12.2	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
DprA_WH	PF17782.1	gi|227829011|ref|YP_002830791.1|	-	0.19	11.8	0.0	0.25	11.5	0.0	1.2	1	0	0	1	1	1	0	DprA	winged	helix	domain
Lys_export	PF03956.13	gi|227829012|ref|YP_002830792.1|	-	6.4e-42	143.2	18.3	6.4e-42	143.2	18.3	2.1	2	0	0	2	2	2	1	Lysine	exporter	LysO
TNFR_16_TM	PF18422.1	gi|227829012|ref|YP_002830792.1|	-	0.077	13.0	0.4	0.077	13.0	0.4	4.2	3	0	0	3	3	3	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
T_cell_tran_alt	PF15128.6	gi|227829012|ref|YP_002830792.1|	-	4.2	7.2	5.1	1.6	8.6	0.4	2.6	2	0	0	2	2	2	0	T-cell	leukemia	translocation-altered
DUF5455	PF17537.2	gi|227829012|ref|YP_002830792.1|	-	5.7	7.4	18.0	1.1	9.7	5.7	3.7	2	1	1	3	3	3	0	Family	of	unknown	function	(DUF5455)
DUF1478	PF07349.11	gi|227829013|ref|YP_002830793.1|	-	0.048	13.6	0.2	0.37	10.7	0.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1478)
TMEM154	PF15102.6	gi|227829013|ref|YP_002830793.1|	-	0.083	12.8	0.5	0.15	11.9	0.5	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
Methyltransf_25	PF13649.6	gi|227829014|ref|YP_002830794.1|	-	2.8e-16	60.0	0.0	5e-16	59.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|227829014|ref|YP_002830794.1|	-	1.5e-12	47.5	0.0	2e-12	47.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|227829014|ref|YP_002830794.1|	-	2.6e-10	40.8	0.0	4.4e-10	40.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|227829014|ref|YP_002830794.1|	-	2.6e-10	40.4	0.0	1.3e-09	38.1	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|227829014|ref|YP_002830794.1|	-	2.1e-07	31.6	0.0	3.4e-07	30.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|227829014|ref|YP_002830794.1|	-	2.5e-07	30.3	0.2	3.6e-07	29.8	0.2	1.3	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
MTS	PF05175.14	gi|227829014|ref|YP_002830794.1|	-	5e-06	26.2	0.0	8.2e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
NodS	PF05401.11	gi|227829014|ref|YP_002830794.1|	-	5.1e-05	23.0	0.0	7.3e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Ubie_methyltran	PF01209.18	gi|227829014|ref|YP_002830794.1|	-	9.8e-05	21.8	0.0	0.00014	21.2	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MethyltransfD12	PF02086.15	gi|227829014|ref|YP_002830794.1|	-	0.00012	21.9	1.7	0.00016	21.4	1.7	1.2	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
CMAS	PF02353.20	gi|227829014|ref|YP_002830794.1|	-	0.0022	17.3	0.1	0.0059	15.9	0.0	1.7	2	0	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
N2227	PF07942.12	gi|227829014|ref|YP_002830794.1|	-	0.0024	17.1	0.8	0.057	12.6	0.0	2.4	2	1	0	2	2	2	1	N2227-like	protein
Methyltransf_32	PF13679.6	gi|227829014|ref|YP_002830794.1|	-	0.0031	17.5	0.0	0.0041	17.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
TPMT	PF05724.11	gi|227829014|ref|YP_002830794.1|	-	0.0045	16.7	0.0	0.0066	16.1	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
AdoMet_MTase	PF07757.13	gi|227829014|ref|YP_002830794.1|	-	0.0045	17.3	0.1	0.012	16.0	0.1	1.7	1	1	0	1	1	1	1	Predicted	AdoMet-dependent	methyltransferase
MetW	PF07021.12	gi|227829014|ref|YP_002830794.1|	-	0.0047	16.5	0.1	0.0069	16.0	0.1	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
tRNA_U5-meth_tr	PF05958.11	gi|227829014|ref|YP_002830794.1|	-	0.012	14.6	0.0	0.021	13.8	0.0	1.4	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
PrmA	PF06325.13	gi|227829014|ref|YP_002830794.1|	-	0.018	14.5	0.0	0.028	13.8	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DREV	PF05219.12	gi|227829014|ref|YP_002830794.1|	-	0.043	12.9	0.1	0.06	12.4	0.1	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_15	PF09445.10	gi|227829014|ref|YP_002830794.1|	-	0.046	13.3	0.1	0.084	12.5	0.0	1.4	1	1	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_18	PF12847.7	gi|227829014|ref|YP_002830794.1|	-	0.054	13.4	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|227829014|ref|YP_002830794.1|	-	0.069	12.2	0.1	0.35	9.9	0.0	1.9	2	0	0	2	2	2	0	Ribosomal	RNA	adenine	dimethylase
Mur_ligase	PF01225.25	gi|227829014|ref|YP_002830794.1|	-	0.085	13.2	0.0	0.14	12.5	0.0	1.4	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
Semialdhyde_dh	PF01118.24	gi|227829015|ref|YP_002830795.1|	-	1.1e-30	106.5	0.0	2.5e-30	105.4	0.0	1.6	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|227829015|ref|YP_002830795.1|	-	5.5e-21	75.5	0.0	7.8e-21	75.0	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
His_Phos_1	PF00300.22	gi|227829017|ref|YP_002830797.1|	-	0.2	11.3	0.0	0.25	11.0	0.0	1.1	1	0	0	1	1	1	0	Histidine	phosphatase	superfamily	(branch	1)
Pro-kuma_activ	PF09286.11	gi|227829018|ref|YP_002830798.1|	-	1e-08	35.6	0.1	2.4e-08	34.4	0.1	1.5	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
Peptidase_S8	PF00082.22	gi|227829018|ref|YP_002830798.1|	-	0.0068	15.7	0.0	0.013	14.8	0.0	1.4	1	0	0	1	1	1	1	Subtilase	family
HRG	PF16954.5	gi|227829018|ref|YP_002830798.1|	-	0.12	12.7	0.6	0.44	11.0	0.6	2.1	1	0	0	1	1	1	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
Iso_dh	PF00180.20	gi|227829019|ref|YP_002830799.1|	-	8.1e-105	350.8	0.1	9.6e-105	350.5	0.1	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_M_14_25_uid58849/NC_012588.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_M_14_25_uid58849/NC_012588.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_M_14_25_uid58849/NC_012588.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_M_14_25_uid58849/NC_012588.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:13:34 2019
# [ok]