# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|297526029|ref|YP_003668053.1| - 8e-21 73.8 1.1 3.5e-19 68.5 0.1 3.5 3 1 1 4 4 4 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|297526029|ref|YP_003668053.1| - 8.8e-10 39.2 0.4 1.2e-08 35.5 0.2 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|297526029|ref|YP_003668053.1| - 4.9e-09 36.7 0.0 1.5e-08 35.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|297526029|ref|YP_003668053.1| - 1.6e-08 34.2 0.2 8e-08 31.9 0.0 1.9 2 0 0 2 2 2 1 Bacterial TniB protein AAA_22 PF13401.6 gi|297526029|ref|YP_003668053.1| - 2.4e-08 34.3 0.0 5e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|297526029|ref|YP_003668053.1| - 1.6e-06 28.2 0.2 4.2e-06 26.8 0.2 1.8 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|297526029|ref|YP_003668053.1| - 0.00034 20.6 0.1 0.00099 19.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|297526029|ref|YP_003668053.1| - 0.0013 18.7 0.0 0.0024 17.8 0.0 1.5 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.9 gi|297526029|ref|YP_003668053.1| - 0.0024 17.2 0.0 0.0036 16.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.13 gi|297526029|ref|YP_003668053.1| - 0.0034 16.6 0.0 0.0057 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|297526029|ref|YP_003668053.1| - 0.0037 16.5 0.3 0.01 15.0 0.3 1.6 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_7 PF12775.7 gi|297526029|ref|YP_003668053.1| - 0.0038 16.8 0.1 0.014 14.9 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|297526029|ref|YP_003668053.1| - 0.0042 16.8 0.0 0.0086 15.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|297526029|ref|YP_003668053.1| - 0.0046 17.5 0.0 0.009 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|297526029|ref|YP_003668053.1| - 0.014 15.2 0.0 1.4 8.6 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|297526029|ref|YP_003668053.1| - 0.019 14.2 0.0 0.039 13.2 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_assoc_2 PF16193.5 gi|297526029|ref|YP_003668053.1| - 0.022 15.1 0.1 0.062 13.6 0.1 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_30 PF13604.6 gi|297526029|ref|YP_003668053.1| - 0.027 14.2 0.0 0.061 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|297526029|ref|YP_003668053.1| - 0.03 14.3 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.12 gi|297526029|ref|YP_003668053.1| - 0.046 13.0 0.0 0.09 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TIP49_C PF17856.1 gi|297526029|ref|YP_003668053.1| - 0.05 13.7 0.4 0.16 12.2 0.1 2.0 2 0 0 2 2 1 0 TIP49 AAA-lid domain DEAD PF00270.29 gi|297526029|ref|YP_003668053.1| - 0.06 13.1 0.6 5.1 6.8 0.2 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_32 PF13654.6 gi|297526029|ref|YP_003668053.1| - 0.072 11.9 0.5 4.6 5.9 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|297526029|ref|YP_003668053.1| - 0.079 13.5 1.5 2.8 8.4 0.1 3.1 2 2 1 3 3 3 0 ABC transporter RNA_helicase PF00910.22 gi|297526029|ref|YP_003668053.1| - 0.084 13.3 0.0 0.23 11.8 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.18 gi|297526029|ref|YP_003668053.1| - 0.087 12.6 0.0 8 6.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein TsaE PF02367.17 gi|297526029|ref|YP_003668053.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 gi|297526029|ref|YP_003668053.1| - 0.13 11.5 0.0 0.33 10.2 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain AAA_24 PF13479.6 gi|297526029|ref|YP_003668053.1| - 0.13 11.9 0.1 0.48 10.1 0.1 2.0 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|297526029|ref|YP_003668053.1| - 0.14 11.8 0.8 7.6 6.1 0.2 2.9 2 1 1 3 3 3 0 AAA domain DUF99 PF01949.16 gi|297526030|ref|YP_003668054.1| - 3.5e-52 176.5 0.0 4.1e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF1233 PF06806.12 gi|297526030|ref|YP_003668054.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Putative excisionase (DUF1233) Radical_SAM PF04055.21 gi|297526031|ref|YP_003668055.1| - 2.2e-22 80.2 0.0 2.2e-22 80.2 0.0 3.1 4 0 0 4 4 4 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|297526031|ref|YP_003668055.1| - 6.1e-08 33.0 0.4 1.3e-07 32.0 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|297526031|ref|YP_003668055.1| - 8.2e-08 32.4 0.7 2.2e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-CHC2 PF01807.20 gi|297526031|ref|YP_003668055.1| - 0.05 13.4 0.5 6.4 6.7 0.3 2.5 2 0 0 2 2 2 0 CHC2 zinc finger Raf1_N PF18578.1 gi|297526032|ref|YP_003668056.1| - 0.086 13.3 0.2 0.17 12.3 0.2 1.5 2 0 0 2 2 2 0 Rubisco accumulation factor 1 alpha helical domain PAPS_reduct PF01507.19 gi|297526033|ref|YP_003668057.1| - 8.1e-31 107.4 0.0 1.4e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|297526033|ref|YP_003668057.1| - 0.019 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|297526033|ref|YP_003668057.1| - 0.023 14.4 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 PP-loop family NAD_synthase PF02540.17 gi|297526033|ref|YP_003668057.1| - 0.082 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD synthase DUF1152 PF06626.12 gi|297526034|ref|YP_003668058.1| - 2.6e-112 374.8 0.1 3e-112 374.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) AAA_18 PF13238.6 gi|297526035|ref|YP_003668059.1| - 2e-24 86.6 0.0 2.9e-24 86.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|297526035|ref|YP_003668059.1| - 8.5e-09 35.9 0.1 3.9e-08 33.8 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|297526035|ref|YP_003668059.1| - 2.1e-06 28.1 0.0 5.1e-06 26.8 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|297526035|ref|YP_003668059.1| - 6e-06 26.7 0.1 2.2e-05 24.9 0.0 1.9 1 1 1 2 2 2 1 AAA domain KTI12 PF08433.10 gi|297526035|ref|YP_003668059.1| - 0.00012 21.7 0.8 0.00068 19.2 0.3 1.9 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|297526035|ref|YP_003668059.1| - 0.00014 22.0 0.0 0.00025 21.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|297526035|ref|YP_003668059.1| - 0.00018 20.8 0.0 0.0003 20.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|297526035|ref|YP_003668059.1| - 0.00027 20.7 0.7 0.00049 19.9 0.6 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|297526035|ref|YP_003668059.1| - 0.00044 20.3 0.2 0.00091 19.3 0.2 1.5 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|297526035|ref|YP_003668059.1| - 0.00057 20.2 0.3 0.001 19.4 0.3 1.4 1 0 0 1 1 1 1 Hydin Adenylate kinase-like domain AAA_22 PF13401.6 gi|297526035|ref|YP_003668059.1| - 0.0018 18.5 0.2 0.0043 17.3 0.2 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|297526035|ref|YP_003668059.1| - 0.0045 16.8 0.7 3.1 7.5 0.0 2.4 2 1 0 2 2 2 2 Cytidylate kinase T2SSE PF00437.20 gi|297526035|ref|YP_003668059.1| - 0.0068 15.5 0.1 0.01 14.9 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein SKI PF01202.22 gi|297526035|ref|YP_003668059.1| - 0.0076 16.4 0.5 0.06 13.5 0.5 2.3 1 1 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|297526035|ref|YP_003668059.1| - 0.0078 16.1 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Deoxynucleoside kinase CPT PF07931.12 gi|297526035|ref|YP_003668059.1| - 0.008 16.0 0.0 0.35 10.7 0.0 2.1 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein ABC_tran PF00005.27 gi|297526035|ref|YP_003668059.1| - 0.01 16.3 0.5 0.013 16.0 0.5 1.5 1 1 0 1 1 1 0 ABC transporter AAA_5 PF07728.14 gi|297526035|ref|YP_003668059.1| - 0.01 15.8 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|297526035|ref|YP_003668059.1| - 0.011 16.1 0.4 0.021 15.2 0.4 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|297526035|ref|YP_003668059.1| - 0.015 14.5 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RuvB_N PF05496.12 gi|297526035|ref|YP_003668059.1| - 0.016 14.9 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|297526035|ref|YP_003668059.1| - 0.017 15.5 0.0 0.019 15.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.17 gi|297526035|ref|YP_003668059.1| - 0.018 14.7 3.1 0.56 9.9 0.1 2.9 1 1 1 2 2 2 0 Thymidylate kinase AAA_30 PF13604.6 gi|297526035|ref|YP_003668059.1| - 0.02 14.6 0.2 0.035 13.8 0.2 1.4 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|297526035|ref|YP_003668059.1| - 0.021 14.2 7.0 1.2 8.5 4.4 2.8 2 1 0 2 2 2 0 KaiC TIP49 PF06068.13 gi|297526035|ref|YP_003668059.1| - 0.026 13.8 0.2 0.049 12.8 0.1 1.5 2 0 0 2 2 1 0 TIP49 P-loop domain Rad17 PF03215.15 gi|297526035|ref|YP_003668059.1| - 0.03 14.2 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|297526035|ref|YP_003668059.1| - 0.046 14.1 0.0 0.085 13.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DnaB_C PF03796.15 gi|297526035|ref|YP_003668059.1| - 0.048 13.0 0.0 0.18 11.1 0.0 1.9 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain APS_kinase PF01583.20 gi|297526035|ref|YP_003668059.1| - 0.049 13.5 0.1 0.26 11.2 0.1 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase ADK PF00406.22 gi|297526035|ref|YP_003668059.1| - 0.057 13.5 0.3 0.33 11.1 0.1 2.1 1 1 1 2 2 2 0 Adenylate kinase PRK PF00485.18 gi|297526035|ref|YP_003668059.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family cobW PF02492.19 gi|297526035|ref|YP_003668059.1| - 0.065 12.8 0.1 0.15 11.6 0.1 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_3 PF07726.11 gi|297526035|ref|YP_003668059.1| - 0.074 12.9 0.0 0.32 10.8 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Cellulase PF00150.18 gi|297526035|ref|YP_003668059.1| - 0.076 12.4 0.1 0.089 12.2 0.1 1.2 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) NACHT PF05729.12 gi|297526035|ref|YP_003668059.1| - 0.087 12.7 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 1 0 NACHT domain SRP54 PF00448.22 gi|297526035|ref|YP_003668059.1| - 0.11 12.1 0.3 0.11 12.1 0.3 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Sulfotransfer_1 PF00685.27 gi|297526035|ref|YP_003668059.1| - 0.14 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Sulfotransferase domain Viral_helicase1 PF01443.18 gi|297526035|ref|YP_003668059.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.4 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase AAA_25 PF13481.6 gi|297526035|ref|YP_003668059.1| - 0.21 11.1 4.7 0.23 11.0 0.8 2.2 1 1 1 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|297526035|ref|YP_003668059.1| - 0.24 10.3 0.8 0.3 9.9 0.1 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|297526035|ref|YP_003668059.1| - 1.7 8.6 6.9 28 4.7 5.3 2.4 2 1 1 3 3 2 0 Helicase HerA, central domain NTPase_1 PF03266.15 gi|297526035|ref|YP_003668059.1| - 1.8 8.5 9.2 0.11 12.3 0.8 2.6 2 1 1 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|297526036|ref|YP_003668060.1| - 1.8e-15 57.0 0.0 2.2e-11 43.9 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|297526036|ref|YP_003668060.1| - 1.2e-14 54.5 0.0 1.8e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|297526036|ref|YP_003668060.1| - 4.2e-11 42.6 0.1 6.8e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|297526036|ref|YP_003668060.1| - 1.6e-07 31.5 1.0 0.011 15.9 0.1 3.1 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|297526036|ref|YP_003668060.1| - 3.9e-05 23.3 0.5 0.00067 19.3 0.1 2.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|297526036|ref|YP_003668060.1| - 0.0016 18.0 0.0 0.03 13.9 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain IIGP PF05049.13 gi|297526036|ref|YP_003668060.1| - 0.02 14.0 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) MeaB PF03308.16 gi|297526036|ref|YP_003668060.1| - 0.032 13.2 0.1 0.3 10.0 0.1 2.1 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 gi|297526036|ref|YP_003668060.1| - 0.036 13.8 0.0 0.43 10.3 0.0 2.2 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|297526036|ref|YP_003668060.1| - 0.071 13.5 0.0 0.14 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|297526036|ref|YP_003668060.1| - 0.076 13.6 0.0 0.25 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AIG1 PF04548.16 gi|297526036|ref|YP_003668060.1| - 0.11 11.8 0.0 0.23 10.7 0.0 1.5 2 0 0 2 2 2 0 AIG1 family AAA_28 PF13521.6 gi|297526036|ref|YP_003668060.1| - 0.16 12.2 0.3 1.9 8.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|297526036|ref|YP_003668060.1| - 0.19 11.0 0.2 1.3 8.3 0.1 2.1 1 1 1 2 2 2 0 Zeta toxin ThiF PF00899.21 gi|297526037|ref|YP_003668061.1| - 1.2e-66 224.6 0.0 1.4e-66 224.3 0.0 1.0 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|297526037|ref|YP_003668061.1| - 0.031 13.6 0.1 0.047 13.0 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YjeF_N PF03853.15 gi|297526037|ref|YP_003668061.1| - 0.14 12.0 0.1 0.32 10.9 0.1 1.5 1 1 0 1 1 1 0 YjeF-related protein N-terminus Sacchrp_dh_NADP PF03435.18 gi|297526037|ref|YP_003668061.1| - 0.18 12.1 0.6 1.9 8.7 0.6 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DAO PF01266.24 gi|297526037|ref|YP_003668061.1| - 1.1 8.7 3.0 1.7 8.1 1.8 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase ThiS PF02597.20 gi|297526038|ref|YP_003668062.1| - 0.00019 22.0 0.1 0.00021 21.9 0.1 1.0 1 0 0 1 1 1 1 ThiS family DUF432 PF04254.13 gi|297526039|ref|YP_003668063.1| - 3.5e-34 117.6 1.8 4e-34 117.4 0.5 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF432) DUF273 PF03314.14 gi|297526039|ref|YP_003668063.1| - 0.088 12.4 0.3 0.13 11.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF273 MS_channel PF00924.18 gi|297526040|ref|YP_003668064.1| - 1.7e-56 191.1 2.6 1.7e-56 191.1 2.6 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF202 PF02656.15 gi|297526040|ref|YP_003668064.1| - 2.8 8.4 7.2 8 7.0 7.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF202) NTP_transferase PF00483.23 gi|297526041|ref|YP_003668065.1| - 8.7e-16 58.2 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|297526041|ref|YP_003668065.1| - 4.5e-15 54.7 6.5 3.1e-07 29.9 0.1 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|297526041|ref|YP_003668065.1| - 1.5e-06 28.6 0.0 1.9e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|297526041|ref|YP_003668065.1| - 7.9e-05 22.3 6.3 5.6 6.8 0.2 4.5 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|297526042|ref|YP_003668066.1| - 1.3e-41 141.6 0.2 3.2e-23 82.0 0.4 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|297526042|ref|YP_003668066.1| - 3.8e-18 66.0 0.0 7.4e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|297526042|ref|YP_003668066.1| - 4.3e-15 55.7 0.0 7.2e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|297526042|ref|YP_003668066.1| - 0.00012 22.1 0.3 0.00035 20.6 0.0 1.9 2 0 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|297526042|ref|YP_003668066.1| - 0.0013 17.7 0.0 0.002 17.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF4350 PF14258.6 gi|297526042|ref|YP_003668066.1| - 0.051 14.0 0.1 0.75 10.3 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) AA_kinase PF00696.28 gi|297526043|ref|YP_003668067.1| - 3.4e-22 79.2 0.2 1.2e-21 77.5 0.2 1.7 1 1 0 1 1 1 1 Amino acid kinase family SpoU_methylase PF00588.19 gi|297526044|ref|YP_003668068.1| - 8.8e-32 110.2 0.0 1.1e-31 109.9 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|297526044|ref|YP_003668068.1| - 1.5e-05 24.9 0.0 0.014 15.3 0.0 2.3 1 1 1 2 2 2 2 SAM-dependent RNA methyltransferase Semialdhyde_dh PF01118.24 gi|297526044|ref|YP_003668068.1| - 0.0068 16.8 0.0 0.012 16.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain RPW8 PF05659.11 gi|297526044|ref|YP_003668068.1| - 0.023 14.4 0.5 0.043 13.5 0.5 1.4 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 MTS PF05175.14 gi|297526045|ref|YP_003668069.1| - 9.2e-14 51.3 0.0 6.3e-13 48.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|297526045|ref|YP_003668069.1| - 3.9e-07 29.8 0.0 5.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|297526045|ref|YP_003668069.1| - 3.3e-06 27.8 0.0 6.5e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297526045|ref|YP_003668069.1| - 4.8e-06 27.2 0.0 9.3e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|297526045|ref|YP_003668069.1| - 4.1e-05 23.6 0.0 0.00027 20.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|297526045|ref|YP_003668069.1| - 7.3e-05 22.5 0.0 0.0011 18.7 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|297526045|ref|YP_003668069.1| - 9.3e-05 22.3 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|297526045|ref|YP_003668069.1| - 0.00017 21.5 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297526045|ref|YP_003668069.1| - 0.0012 19.4 0.0 0.0021 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|297526045|ref|YP_003668069.1| - 0.01 15.6 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase TrmK PF04816.12 gi|297526045|ref|YP_003668069.1| - 0.1 12.1 0.0 4.6 6.7 0.0 2.0 2 0 0 2 2 2 0 tRNA (adenine(22)-N(1))-methyltransferase RrnaAD PF00398.20 gi|297526046|ref|YP_003668070.1| - 1e-33 116.5 0.0 1.3e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|297526046|ref|YP_003668070.1| - 0.014 16.1 0.0 0.036 14.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|297526046|ref|YP_003668070.1| - 0.025 14.4 0.0 0.11 12.3 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297526046|ref|YP_003668070.1| - 0.12 13.0 0.0 0.36 11.5 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Dam PF05869.11 gi|297526046|ref|YP_003668070.1| - 0.19 11.3 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) DUF655 PF04919.12 gi|297526047|ref|YP_003668071.1| - 3.5e-64 216.1 1.8 4e-64 215.9 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|297526047|ref|YP_003668071.1| - 0.00082 19.6 0.2 0.0025 18.0 0.2 1.8 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|297526047|ref|YP_003668071.1| - 0.0032 17.7 0.1 0.0062 16.8 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|297526047|ref|YP_003668071.1| - 0.14 12.0 0.1 0.39 10.7 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif Fn3-like PF14310.6 gi|297526047|ref|YP_003668071.1| - 0.18 12.0 0.0 0.38 10.9 0.0 1.5 1 0 0 1 1 1 0 Fibronectin type III-like domain RNA_pol_Rpb4 PF03874.16 gi|297526048|ref|YP_003668072.1| - 6.2e-16 58.8 4.9 1.2e-15 58.0 4.9 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 HRDC PF00570.23 gi|297526048|ref|YP_003668072.1| - 0.0012 18.8 0.4 0.02 14.8 0.1 2.2 1 1 1 2 2 2 1 HRDC domain DUF1822 PF08852.11 gi|297526048|ref|YP_003668072.1| - 0.011 14.8 0.2 0.012 14.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) YjcZ PF13990.6 gi|297526048|ref|YP_003668072.1| - 0.015 14.7 0.2 0.016 14.6 0.2 1.1 1 0 0 1 1 1 0 YjcZ-like protein F-box PF00646.33 gi|297526048|ref|YP_003668072.1| - 0.16 11.9 0.1 0.59 10.1 0.0 2.0 2 0 0 2 2 2 0 F-box domain Ribosomal_L21e PF01157.18 gi|297526049|ref|YP_003668073.1| - 7.9e-39 131.6 1.9 8.7e-39 131.5 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.17 gi|297526050|ref|YP_003668074.1| - 1.7e-10 41.1 0.3 5e-10 39.7 0.3 1.8 1 0 0 1 1 1 1 THUMP domain Rad50_zn_hook PF04423.14 gi|297526050|ref|YP_003668074.1| - 0.0012 18.6 0.4 0.0099 15.7 0.4 2.7 1 0 0 1 1 1 1 Rad50 zinc hook motif SRP54 PF00448.22 gi|297526052|ref|YP_003668076.1| - 4.2e-75 251.7 0.0 6e-75 251.2 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|297526052|ref|YP_003668076.1| - 4.5e-28 97.8 0.3 1.2e-27 96.4 0.3 1.7 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|297526052|ref|YP_003668076.1| - 7.2e-14 51.8 0.1 7.2e-14 51.8 0.1 3.1 4 0 0 4 4 3 1 SRP54-type protein, helical bundle domain AAA_33 PF13671.6 gi|297526052|ref|YP_003668076.1| - 1.1e-07 32.1 0.0 3.3e-07 30.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|297526052|ref|YP_003668076.1| - 1.7e-07 30.8 0.0 3.9e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|297526052|ref|YP_003668076.1| - 3.9e-07 30.2 0.0 4e-06 26.9 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|297526052|ref|YP_003668076.1| - 2.8e-05 23.8 0.3 0.00033 20.3 0.3 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|297526052|ref|YP_003668076.1| - 4.7e-05 23.7 0.0 0.00017 21.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|297526052|ref|YP_003668076.1| - 0.00012 21.9 0.1 0.0003 20.6 0.0 1.7 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.23 gi|297526052|ref|YP_003668076.1| - 0.00041 20.4 0.1 0.0018 18.4 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_17 PF13207.6 gi|297526052|ref|YP_003668076.1| - 0.00061 20.2 0.0 0.00061 20.2 0.0 3.0 3 1 1 4 4 3 1 AAA domain ResIII PF04851.15 gi|297526052|ref|YP_003668076.1| - 0.0007 19.6 0.3 0.045 13.7 0.0 2.5 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|297526052|ref|YP_003668076.1| - 0.0015 18.9 0.0 0.0056 17.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|297526052|ref|YP_003668076.1| - 0.0024 17.6 0.0 0.047 13.4 0.0 2.6 3 0 0 3 3 3 1 AAA domain ParA PF10609.9 gi|297526052|ref|YP_003668076.1| - 0.0042 16.6 0.0 0.008 15.7 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase 6PF2K PF01591.18 gi|297526052|ref|YP_003668076.1| - 0.0056 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase MeaB PF03308.16 gi|297526052|ref|YP_003668076.1| - 0.0073 15.3 0.1 0.13 11.2 0.1 2.3 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase PF06745.13 gi|297526052|ref|YP_003668076.1| - 0.0074 15.7 0.1 0.026 13.9 0.1 1.9 1 1 0 1 1 1 1 KaiC MobB PF03205.14 gi|297526052|ref|YP_003668076.1| - 0.0088 15.9 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 gi|297526052|ref|YP_003668076.1| - 0.018 15.0 0.0 0.045 13.7 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA PF00004.29 gi|297526052|ref|YP_003668076.1| - 0.031 14.7 1.0 0.18 12.2 0.3 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.6 gi|297526052|ref|YP_003668076.1| - 0.032 14.2 0.1 0.12 12.3 0.0 1.9 1 1 0 2 2 2 0 AAA domain PFOR_II PF17147.4 gi|297526052|ref|YP_003668076.1| - 0.037 14.3 0.1 0.36 11.1 0.0 2.5 3 0 0 3 3 2 0 Pyruvate:ferredoxin oxidoreductase core domain II Thymidylate_kin PF02223.17 gi|297526052|ref|YP_003668076.1| - 0.052 13.2 0.3 0.3 10.7 0.1 2.3 2 0 0 2 2 2 0 Thymidylate kinase ATP_bind_1 PF03029.17 gi|297526052|ref|YP_003668076.1| - 0.075 12.8 0.1 0.54 10.0 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|297526052|ref|YP_003668076.1| - 0.14 12.4 0.3 0.39 11.0 0.1 2.0 2 1 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|297526052|ref|YP_003668076.1| - 0.15 12.6 0.0 0.4 11.2 0.0 1.7 2 0 0 2 2 1 0 ABC transporter VirC1 PF07015.11 gi|297526052|ref|YP_003668076.1| - 0.17 11.1 0.0 0.36 10.1 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein RHH_3 PF12651.7 gi|297526052|ref|YP_003668076.1| - 0.21 11.6 2.8 24 5.0 0.7 3.4 3 0 0 3 3 3 0 Ribbon-helix-helix domain AAA_25 PF13481.6 gi|297526052|ref|YP_003668076.1| - 0.38 10.3 1.8 2.2 7.8 1.7 2.3 1 1 0 1 1 1 0 AAA domain Chordopox_RPO7 PF05864.12 gi|297526053|ref|YP_003668077.1| - 0.2 11.9 0.0 0.65 10.3 0.0 1.8 2 0 0 2 2 2 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) NTP_transf_2 PF01909.23 gi|297526054|ref|YP_003668078.1| - 1.4e-09 38.1 0.1 2.4e-09 37.4 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|297526054|ref|YP_003668078.1| - 3.3e-09 36.7 0.1 7.9e-09 35.5 0.0 1.7 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase RlaP PF10127.9 gi|297526054|ref|YP_003668078.1| - 0.011 15.4 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family Radical_SAM PF04055.21 gi|297526054|ref|YP_003668078.1| - 0.016 15.6 0.3 0.023 15.1 0.3 1.3 1 0 0 1 1 1 0 Radical SAM superfamily Adenyl_transf PF04439.12 gi|297526054|ref|YP_003668078.1| - 0.063 12.4 0.0 0.12 11.4 0.0 1.5 1 1 0 1 1 1 0 Streptomycin adenylyltransferase DUF294 PF03445.13 gi|297526054|ref|YP_003668078.1| - 0.18 11.6 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|297526055|ref|YP_003668079.1| - 2e-28 98.9 1.6 2.3e-28 98.7 1.6 1.0 1 0 0 1 1 1 1 HEPN domain Lyase_1 PF00206.20 gi|297526056|ref|YP_003668080.1| - 9e-50 169.8 0.1 9e-50 169.8 0.1 1.4 2 0 0 2 2 2 1 Lyase ADSL_C PF10397.9 gi|297526056|ref|YP_003668080.1| - 1.6e-14 54.1 4.1 2e-14 53.9 0.5 2.8 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|297526056|ref|YP_003668080.1| - 2.8e-07 30.6 0.6 8.8e-07 29.0 0.6 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DNA_pol3_finger PF17657.1 gi|297526056|ref|YP_003668080.1| - 0.016 14.5 2.1 0.53 9.6 0.5 2.5 2 0 0 2 2 2 0 Bacterial DNA polymerase III alpha subunit finger domain FumaraseC_C PF10415.9 gi|297526056|ref|YP_003668080.1| - 0.049 14.1 1.4 0.48 10.9 0.1 2.8 2 0 0 2 2 2 0 Fumarase C C-terminus DUF5073 PF16817.5 gi|297526056|ref|YP_003668080.1| - 0.16 12.0 0.1 0.63 10.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5073) ASL_C2 PF14698.6 gi|297526056|ref|YP_003668080.1| - 0.18 12.6 1.3 0.5 11.2 0.0 2.5 3 0 0 3 3 3 0 Argininosuccinate lyase C-terminal Pyr_redox_2 PF07992.14 gi|297526057|ref|YP_003668081.1| - 1.5e-13 50.7 0.1 0.0001 21.7 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|297526057|ref|YP_003668081.1| - 3e-12 46.4 0.6 6.1e-06 25.7 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|297526057|ref|YP_003668081.1| - 1.1e-09 37.5 2.7 0.00055 18.7 0.1 2.7 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|297526057|ref|YP_003668081.1| - 5.7e-09 36.0 0.6 0.0002 21.0 0.1 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|297526057|ref|YP_003668081.1| - 4.9e-06 25.9 4.2 0.0057 15.8 0.0 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|297526057|ref|YP_003668081.1| - 0.00019 21.5 0.6 0.11 12.5 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|297526057|ref|YP_003668081.1| - 0.00066 18.9 3.4 0.0041 16.3 0.3 2.6 3 0 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 gi|297526057|ref|YP_003668081.1| - 0.0033 16.7 0.1 0.0053 16.1 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|297526057|ref|YP_003668081.1| - 0.0075 16.5 0.3 0.028 14.6 0.3 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|297526057|ref|YP_003668081.1| - 0.012 14.7 0.2 0.052 12.6 0.1 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|297526057|ref|YP_003668081.1| - 0.025 13.8 0.1 0.053 12.8 0.1 1.5 1 0 0 1 1 1 0 Thi4 family Pyr_redox PF00070.27 gi|297526057|ref|YP_003668081.1| - 0.048 14.2 1.1 2 9.0 0.2 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Adenylsucc_synt PF00709.21 gi|297526058|ref|YP_003668082.1| - 2.3e-74 250.8 0.3 4.3e-39 134.6 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Pribosyltran PF00156.27 gi|297526059|ref|YP_003668083.1| - 7e-24 84.1 0.0 1.3e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|297526059|ref|YP_003668083.1| - 0.00016 21.2 0.0 0.00023 20.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|297526059|ref|YP_003668083.1| - 0.17 11.4 0.1 0.25 10.8 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase GATase PF00117.28 gi|297526060|ref|YP_003668084.1| - 3.5e-36 124.8 0.0 5.4e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|297526060|ref|YP_003668084.1| - 5.2e-34 116.2 0.4 5.2e-34 116.2 0.4 1.9 2 0 0 2 2 2 1 GMP synthase C terminal domain Peptidase_C26 PF07722.13 gi|297526060|ref|YP_003668084.1| - 3e-12 46.8 0.6 2.7e-11 43.6 0.2 2.5 2 1 0 2 2 2 1 Peptidase C26 NAD_synthase PF02540.17 gi|297526060|ref|YP_003668084.1| - 2.8e-11 43.0 0.1 6e-06 25.6 0.0 2.6 3 0 0 3 3 3 2 NAD synthase tRNA_Me_trans PF03054.16 gi|297526060|ref|YP_003668084.1| - 0.00014 20.8 0.1 0.0014 17.5 0.1 2.0 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|297526060|ref|YP_003668084.1| - 0.0003 20.4 0.0 0.026 14.0 0.0 2.3 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|297526060|ref|YP_003668084.1| - 0.00052 19.8 0.0 0.00092 19.0 0.0 1.4 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.14 gi|297526060|ref|YP_003668084.1| - 0.016 14.8 0.0 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.19 gi|297526060|ref|YP_003668084.1| - 0.085 12.1 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|297526060|ref|YP_003668084.1| - 0.16 12.0 0.0 0.38 10.8 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family SdpI PF13630.6 gi|297526061|ref|YP_003668085.1| - 2e-10 40.6 5.0 2e-10 40.6 5.0 4.1 4 1 0 4 4 4 1 SdpI/YhfL protein family DUF1648 PF07853.11 gi|297526061|ref|YP_003668085.1| - 6.5e-09 35.3 0.8 6.5e-09 35.3 0.8 4.1 4 0 0 4 4 4 1 Protein of unknown function (DUF1648) DUF3043 PF11241.8 gi|297526061|ref|YP_003668085.1| - 2.8 8.0 12.1 8.3 6.4 4.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) PadR PF03551.14 gi|297526062|ref|YP_003668086.1| - 0.0016 18.4 0.0 0.0018 18.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF3687 PF12459.8 gi|297526062|ref|YP_003668086.1| - 0.2 11.2 2.7 0.44 10.1 2.7 1.6 1 1 0 1 1 1 0 D-Ala-teichoic acid biosynthesis protein HKR_ArcB_TM PF18415.1 gi|297526063|ref|YP_003668087.1| - 0.011 16.6 1.8 0.011 16.6 1.8 2.2 2 2 0 2 2 2 0 Histidine kinase receptor ArcB trans-membrane domain CbtA PF09490.10 gi|297526063|ref|YP_003668087.1| - 0.079 12.7 7.3 4.3 7.0 7.3 2.3 1 1 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) DUF5455 PF17537.2 gi|297526063|ref|YP_003668087.1| - 0.72 10.3 7.2 0.21 12.0 3.7 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5455) DUF1427 PF07235.11 gi|297526063|ref|YP_003668087.1| - 4.4 7.3 9.0 0.14 12.1 2.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) YbjQ_1 PF01906.17 gi|297526065|ref|YP_003668089.1| - 1.1e-38 132.0 1.4 1.2e-38 131.9 1.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|297526065|ref|YP_003668089.1| - 2.1e-05 24.9 1.2 0.11 13.0 1.2 2.1 1 1 0 1 1 1 1 Selenium binding protein DUF4156 PF13698.6 gi|297526065|ref|YP_003668089.1| - 0.013 15.8 0.0 0.019 15.3 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) Pribosyltran PF00156.27 gi|297526066|ref|YP_003668090.1| - 1.5e-18 66.8 0.0 2.1e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|297526066|ref|YP_003668090.1| - 0.017 14.5 0.0 0.04 13.3 0.0 1.5 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase PNP_UDP_1 PF01048.20 gi|297526067|ref|YP_003668091.1| - 1.8e-45 155.0 0.0 2e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PE-PPE PF08237.11 gi|297526067|ref|YP_003668091.1| - 0.18 11.3 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain DUF1072 PF06380.11 gi|297526069|ref|YP_003668093.1| - 0.026 14.4 0.2 0.051 13.5 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1072) Yip1 PF04893.17 gi|297526069|ref|YP_003668093.1| - 0.13 11.9 13.1 0.18 11.5 13.1 1.3 1 0 0 1 1 1 0 Yip1 domain IncD PF17628.2 gi|297526069|ref|YP_003668093.1| - 0.13 12.0 2.5 0.26 11.1 0.3 1.9 1 1 1 2 2 2 0 Inclusion membrane protein D DUF1772 PF08592.11 gi|297526069|ref|YP_003668093.1| - 1.3 9.4 5.7 0.34 11.2 1.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) S_4TM PF18159.1 gi|297526069|ref|YP_003668093.1| - 2.9 7.1 7.2 0.22 10.8 1.5 1.8 1 1 0 1 1 1 0 SMODS-associating 4TM effector domain DUF2070 PF09843.9 gi|297526069|ref|YP_003668093.1| - 3.3 5.9 18.9 3.5 5.8 18.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TspO_MBR PF03073.15 gi|297526069|ref|YP_003668093.1| - 9.7 6.3 12.3 2.1 8.4 6.1 2.0 1 1 1 2 2 2 0 TspO/MBR family RimK PF08443.11 gi|297526070|ref|YP_003668094.1| - 3e-28 98.7 0.0 4.1e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|297526070|ref|YP_003668094.1| - 7.4e-10 38.5 0.0 1.2e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|297526070|ref|YP_003668094.1| - 4.9e-08 33.2 0.0 1.6e-07 31.5 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|297526070|ref|YP_003668094.1| - 3.1e-07 30.1 0.7 0.00018 21.1 0.1 2.4 1 1 1 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain ATPgrasp_ST PF14397.6 gi|297526070|ref|YP_003668094.1| - 8.8e-06 25.2 0.0 0.11 11.7 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|297526070|ref|YP_003668094.1| - 1.5e-05 24.4 0.0 0.0049 16.2 0.0 2.2 2 0 0 2 2 2 2 YheC/D like ATP-grasp Rimk_N PF18030.1 gi|297526070|ref|YP_003668094.1| - 0.043 14.2 0.0 0.071 13.5 0.0 1.5 1 0 0 1 1 1 0 RimK PreATP-grasp domain CPSase_L_D2 PF02786.17 gi|297526070|ref|YP_003668094.1| - 0.16 11.4 0.0 0.4 10.1 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1614 PF07758.11 gi|297526071|ref|YP_003668095.1| - 1.9e-13 50.7 15.2 4.1e-13 49.7 13.9 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1614) DUF2070 PF09843.9 gi|297526071|ref|YP_003668095.1| - 4.8 5.4 20.4 5.8 5.1 20.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Rhomboid PF01694.22 gi|297526073|ref|YP_003668097.1| - 2.1e-36 125.2 17.2 2.1e-36 125.2 17.2 1.4 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|297526073|ref|YP_003668097.1| - 0.00018 22.0 1.0 0.00018 22.0 1.0 2.3 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Metallophos PF00149.28 gi|297526074|ref|YP_003668098.1| - 2.7e-16 60.7 0.4 3.5e-16 60.3 0.4 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|297526074|ref|YP_003668098.1| - 5.8e-07 29.8 0.0 7.2e-06 26.3 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Glyco_transf_4 PF13439.6 gi|297526074|ref|YP_003668098.1| - 0.073 13.1 0.0 0.17 11.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyltransferase Family 4 DUF4428 PF14471.6 gi|297526075|ref|YP_003668099.1| - 0.00011 22.1 1.3 0.00011 22.1 1.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) zf-C3HC4_3 PF13920.6 gi|297526075|ref|YP_003668099.1| - 0.00084 19.2 5.6 0.057 13.3 5.6 2.2 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-MYND PF01753.18 gi|297526075|ref|YP_003668099.1| - 0.0026 17.8 0.6 0.014 15.5 0.6 2.0 1 1 0 1 1 1 1 MYND finger Prok-RING_1 PF14446.6 gi|297526075|ref|YP_003668099.1| - 0.0029 17.5 2.2 0.3 11.0 0.5 2.3 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|297526075|ref|YP_003668099.1| - 0.0032 17.5 5.2 0.068 13.3 0.4 2.3 1 1 1 2 2 2 1 Zinc ribbon domain DZR PF12773.7 gi|297526075|ref|YP_003668099.1| - 0.0038 17.2 5.7 0.13 12.3 6.0 2.5 1 1 1 2 2 2 1 Double zinc ribbon C1_2 PF03107.16 gi|297526075|ref|YP_003668099.1| - 0.0045 17.3 4.8 0.077 13.3 0.3 2.2 2 0 0 2 2 2 1 C1 domain DUF1272 PF06906.11 gi|297526075|ref|YP_003668099.1| - 0.0069 16.4 7.5 0.077 13.1 7.5 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) zf-C6H2 PF15801.5 gi|297526075|ref|YP_003668099.1| - 0.0088 16.3 5.8 0.066 13.5 0.2 2.9 2 1 1 3 3 3 1 zf-MYND-like zinc finger, mRNA-binding PyrI_C PF02748.15 gi|297526075|ref|YP_003668099.1| - 0.011 15.6 3.1 0.071 13.0 1.1 2.2 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.15 gi|297526075|ref|YP_003668099.1| - 0.018 15.1 3.1 1.2 9.2 0.2 2.4 2 0 0 2 2 2 0 BED zinc finger zf-ribbon_3 PF13248.6 gi|297526075|ref|YP_003668099.1| - 0.066 12.6 8.4 0.23 10.9 0.4 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|297526075|ref|YP_003668099.1| - 0.071 12.5 4.4 2.9 7.3 0.1 2.3 2 1 0 2 2 2 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|297526075|ref|YP_003668099.1| - 0.078 12.6 5.9 7.1 6.3 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|297526075|ref|YP_003668099.1| - 0.11 12.3 4.7 2.3 8.0 0.4 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|297526075|ref|YP_003668099.1| - 0.21 11.4 7.0 1.8 8.4 0.7 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HypA PF01155.19 gi|297526075|ref|YP_003668099.1| - 0.21 11.6 4.0 6.9 6.7 4.0 2.1 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|297526075|ref|YP_003668099.1| - 0.21 11.3 8.2 3.6 7.4 1.4 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|297526075|ref|YP_003668099.1| - 0.24 11.5 4.3 5.2 7.3 5.5 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HscB_4_cys PF18256.1 gi|297526075|ref|YP_003668099.1| - 0.28 11.0 0.2 0.28 11.0 0.2 3.2 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zf-CHY PF05495.12 gi|297526075|ref|YP_003668099.1| - 0.3 11.6 5.7 0.55 10.8 5.7 1.4 1 1 0 1 1 1 0 CHY zinc finger Metallothio_Pro PF02069.16 gi|297526075|ref|YP_003668099.1| - 0.38 11.0 6.8 0.93 9.8 6.8 1.8 1 1 0 1 1 1 0 Prokaryotic metallothionein Zn_ribbon_SprT PF17283.2 gi|297526075|ref|YP_003668099.1| - 0.4 10.6 13.6 6.9 6.7 8.6 2.9 1 1 1 2 2 2 0 SprT-like zinc ribbon domain zf-H2C2_2 PF13465.6 gi|297526075|ref|YP_003668099.1| - 0.43 11.1 6.8 4.6 7.9 0.3 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf_Rg PF17915.1 gi|297526075|ref|YP_003668099.1| - 0.52 9.8 3.7 0.68 9.4 0.0 2.5 2 1 0 2 2 2 0 Reverse gyrase zinc finger OrfB_Zn_ribbon PF07282.11 gi|297526075|ref|YP_003668099.1| - 0.53 10.2 4.3 1.7 8.6 1.6 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-LITAF-like PF10601.9 gi|297526075|ref|YP_003668099.1| - 0.83 10.0 9.9 68 3.8 9.9 2.9 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain BIR PF00653.21 gi|297526075|ref|YP_003668099.1| - 0.85 10.3 7.1 5.1 7.8 0.2 2.5 1 1 2 3 3 3 0 Inhibitor of Apoptosis domain Zn_Tnp_IS1595 PF12760.7 gi|297526075|ref|YP_003668099.1| - 1.3 9.0 9.3 1.3e+02 2.6 9.3 2.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-RING_5 PF14634.6 gi|297526075|ref|YP_003668099.1| - 1.4 8.9 8.3 1.2e+02 2.8 8.4 2.7 1 1 0 1 1 1 0 zinc-RING finger domain Mu-like_Com PF10122.9 gi|297526075|ref|YP_003668099.1| - 1.4 8.4 8.2 2.1 7.9 0.4 2.4 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-Di19 PF05605.12 gi|297526075|ref|YP_003668099.1| - 1.7 9.0 12.0 1.6 9.1 0.7 3.1 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|297526075|ref|YP_003668099.1| - 1.7 8.2 10.2 1.2 8.7 0.6 2.4 2 1 1 3 3 3 0 TFIIB zinc-binding Anti-TRAP PF15777.5 gi|297526075|ref|YP_003668099.1| - 1.9 8.5 5.0 3.6 7.6 2.6 2.0 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Cys_rich_CPXG PF14255.6 gi|297526075|ref|YP_003668099.1| - 2.2 8.3 10.2 2.2 8.2 0.6 2.8 2 1 1 3 3 3 0 Cysteine-rich CPXCG zf-nanos PF05741.13 gi|297526075|ref|YP_003668099.1| - 2.3 8.5 8.3 8.9 6.6 0.3 3.1 2 1 1 3 3 3 0 Nanos RNA binding domain zinc_ribbon_9 PF14369.6 gi|297526075|ref|YP_003668099.1| - 5.9 7.2 8.3 8.2 6.8 0.3 2.8 2 1 1 3 3 3 0 zinc-ribbon zf-C2H2_4 PF13894.6 gi|297526075|ref|YP_003668099.1| - 8.8 7.5 10.1 3.8 8.6 0.6 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger PHP_C PF13263.6 gi|297526076|ref|YP_003668100.1| - 4.7e-16 58.3 0.0 8.2e-16 57.5 0.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|297526076|ref|YP_003668100.1| - 1.7e-09 38.2 0.0 2.8e-09 37.5 0.0 1.5 1 1 0 1 1 1 1 PHP domain tRNA-synt_1 PF00133.22 gi|297526077|ref|YP_003668101.1| - 3.3e-123 412.1 0.1 5.5e-122 408.0 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|297526077|ref|YP_003668101.1| - 7.4e-32 110.6 4.8 3.8e-16 58.8 0.1 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|297526077|ref|YP_003668101.1| - 5.8e-29 101.0 5.3 1.3e-28 99.9 5.3 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|297526077|ref|YP_003668101.1| - 0.00014 21.5 0.0 0.083 12.4 0.0 2.5 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 zf-ISL3 PF14690.6 gi|297526077|ref|YP_003668101.1| - 0.011 16.4 4.6 4.6 8.0 0.4 3.7 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.6 gi|297526077|ref|YP_003668101.1| - 0.018 14.3 2.4 3.7 7.0 0.0 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger tRNA-synt_1f PF01921.18 gi|297526077|ref|YP_003668101.1| - 0.032 13.2 0.0 0.85 8.5 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (K) Mut7-C PF01927.16 gi|297526077|ref|YP_003668101.1| - 0.054 13.6 2.3 11 6.1 0.2 4.1 2 2 0 2 2 2 0 Mut7-C RNAse domain DZR PF12773.7 gi|297526077|ref|YP_003668101.1| - 0.056 13.5 1.3 4.9 7.3 0.2 3.1 3 0 0 3 3 3 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|297526077|ref|YP_003668101.1| - 0.096 12.2 2.6 13 5.3 0.0 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|297526077|ref|YP_003668101.1| - 0.14 12.2 1.6 2.2 8.5 0.3 2.9 2 1 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|297526077|ref|YP_003668101.1| - 0.5 10.4 3.1 2.1 8.5 0.2 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ACC PF17848.1 gi|297526077|ref|YP_003668101.1| - 0.64 10.2 7.8 8.3 6.6 0.1 4.0 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF4147 PF13660.6 gi|297526078|ref|YP_003668102.1| - 3.1e-76 255.9 0.0 3.8e-76 255.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|297526078|ref|YP_003668102.1| - 1.2e-30 105.9 0.0 2.5e-30 104.9 0.0 1.5 1 0 0 1 1 1 1 MOFRL family Radical_SAM PF04055.21 gi|297526080|ref|YP_003668104.1| - 6.2e-12 46.2 0.4 1.8e-11 44.7 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|297526080|ref|YP_003668104.1| - 5.5e-07 29.9 0.0 1.3e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|297526080|ref|YP_003668104.1| - 0.00091 19.4 0.0 0.0028 17.8 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Maf PF02545.14 gi|297526081|ref|YP_003668105.1| - 2.8e-46 157.4 0.0 3.2e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein AP_endonuc_2 PF01261.24 gi|297526081|ref|YP_003668105.1| - 0.098 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel ABC_tran PF00005.27 gi|297526082|ref|YP_003668106.1| - 4.1e-17 63.0 0.0 1.3e-16 61.4 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526082|ref|YP_003668106.1| - 6.7e-08 32.7 0.1 0.0015 18.4 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Acetyltransf_1 PF00583.25 gi|297526082|ref|YP_003668106.1| - 1.1e-05 25.6 0.1 2.4e-05 24.5 0.2 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family SMC_N PF02463.19 gi|297526082|ref|YP_003668106.1| - 0.00025 20.5 0.0 0.016 14.7 0.0 1.9 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|297526082|ref|YP_003668106.1| - 0.00044 20.5 0.0 0.001 19.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.7 gi|297526082|ref|YP_003668106.1| - 0.00051 20.4 0.0 0.0014 19.0 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_16 PF13191.6 gi|297526082|ref|YP_003668106.1| - 0.0032 17.9 0.1 0.0087 16.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|297526082|ref|YP_003668106.1| - 0.0046 16.7 0.8 0.027 14.2 0.8 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|297526082|ref|YP_003668106.1| - 0.0047 16.8 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.6 gi|297526082|ref|YP_003668106.1| - 0.0089 16.2 0.0 0.022 14.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|297526082|ref|YP_003668106.1| - 0.017 15.1 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase FtsK_SpoIIIE PF01580.18 gi|297526082|ref|YP_003668106.1| - 0.017 14.5 0.4 0.12 11.7 0.1 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|297526082|ref|YP_003668106.1| - 0.027 14.5 0.0 0.054 13.6 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|297526082|ref|YP_003668106.1| - 0.033 13.8 0.1 0.41 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|297526082|ref|YP_003668106.1| - 0.034 14.5 0.5 0.17 12.2 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|297526082|ref|YP_003668106.1| - 0.039 14.5 0.0 0.082 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|297526082|ref|YP_003668106.1| - 0.073 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Acetyltransf_10 PF13673.7 gi|297526082|ref|YP_003668106.1| - 0.074 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TsaE PF02367.17 gi|297526082|ref|YP_003668106.1| - 0.075 13.0 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vps36-NZF-N PF16988.5 gi|297526082|ref|YP_003668106.1| - 0.081 12.3 1.3 0.19 11.1 1.3 1.6 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain cobW PF02492.19 gi|297526082|ref|YP_003668106.1| - 0.091 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|297526082|ref|YP_003668106.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|297526082|ref|YP_003668106.1| - 0.13 12.6 0.0 0.71 10.3 0.0 2.2 2 0 0 2 2 2 0 RNA helicase FR47 PF08445.10 gi|297526082|ref|YP_003668106.1| - 0.14 12.2 0.0 0.37 10.8 0.0 1.8 1 0 0 1 1 1 0 FR47-like protein Creatininase PF02633.14 gi|297526083|ref|YP_003668107.1| - 3.5e-25 88.9 0.0 4.8e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 Creatinine amidohydrolase PMBR PF09373.10 gi|297526083|ref|YP_003668107.1| - 0.014 15.5 0.0 0.051 13.8 0.0 2.0 1 0 0 1 1 1 0 Pseudomurein-binding repeat AGOG PF09171.10 gi|297526084|ref|YP_003668108.1| - 8.3e-70 234.9 1.1 1e-69 234.6 1.1 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Nitro_FeMo-Co PF02579.17 gi|297526085|ref|YP_003668109.1| - 0.00011 22.5 0.0 0.00016 21.9 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF1892 PF08987.10 gi|297526085|ref|YP_003668109.1| - 0.0072 16.5 0.5 0.0086 16.2 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1892) Response_reg PF00072.24 gi|297526085|ref|YP_003668109.1| - 0.028 14.6 0.0 0.032 14.4 0.0 1.3 1 1 0 1 1 1 0 Response regulator receiver domain DUF2283 PF10049.9 gi|297526087|ref|YP_003668111.1| - 7.5e-11 42.1 0.8 1e-10 41.7 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Methyltransf_11 PF08241.12 gi|297526089|ref|YP_003668113.1| - 1.9e-17 63.7 0.0 2.9e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297526089|ref|YP_003668113.1| - 6.7e-13 49.2 0.0 1e-12 48.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|297526089|ref|YP_003668113.1| - 1.1e-10 41.7 0.0 1.3e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|297526089|ref|YP_003668113.1| - 2.3e-09 37.0 0.0 3.5e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|297526089|ref|YP_003668113.1| - 5.5e-08 32.7 0.0 1.1e-07 31.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|297526089|ref|YP_003668113.1| - 5.6e-08 33.4 0.0 1e-07 32.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|297526089|ref|YP_003668113.1| - 0.00022 20.9 0.0 0.0003 20.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|297526089|ref|YP_003668113.1| - 0.0016 17.4 0.1 0.003 16.5 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) DREV PF05219.12 gi|297526089|ref|YP_003668113.1| - 0.013 14.7 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase Methyltr_RsmB-F PF01189.17 gi|297526090|ref|YP_003668114.1| - 2.2e-39 135.2 0.0 3e-39 134.7 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|297526090|ref|YP_003668114.1| - 1.5e-12 47.3 0.3 3.1e-12 46.3 0.3 1.6 1 0 0 1 1 1 1 PUA domain Cons_hypoth95 PF03602.15 gi|297526090|ref|YP_003668114.1| - 0.0096 15.6 0.0 0.024 14.3 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltr_RsmF_N PF17125.5 gi|297526090|ref|YP_003668114.1| - 0.031 14.8 0.0 0.49 10.9 0.0 2.5 3 0 0 3 3 3 0 N-terminal domain of 16S rRNA methyltransferase RsmF PIN_6 PF17146.4 gi|297526091|ref|YP_003668115.1| - 2.5e-19 69.6 0.3 3.4e-19 69.1 0.3 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease zf-ribbon_3 PF13248.6 gi|297526091|ref|YP_003668115.1| - 0.00014 21.1 3.2 0.00025 20.4 3.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|297526091|ref|YP_003668115.1| - 0.00061 19.8 4.5 0.017 15.1 0.2 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain RecR PF02132.15 gi|297526091|ref|YP_003668115.1| - 0.007 15.9 0.8 0.014 15.0 0.1 1.8 2 0 0 2 2 2 1 RecR protein DZR PF12773.7 gi|297526091|ref|YP_003668115.1| - 0.0097 15.9 0.3 0.017 15.1 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|297526091|ref|YP_003668115.1| - 0.011 15.8 0.3 0.025 14.7 0.3 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.19 gi|297526091|ref|YP_003668115.1| - 0.016 15.0 2.6 0.045 13.5 0.5 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 gi|297526091|ref|YP_003668115.1| - 0.046 13.4 2.5 7.3 6.5 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|297526091|ref|YP_003668115.1| - 0.053 13.1 1.6 8.1 6.1 0.4 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding DUF836 PF05768.14 gi|297526091|ref|YP_003668115.1| - 0.059 13.8 0.0 2.1 8.8 0.0 2.3 1 1 1 2 2 2 0 Glutaredoxin-like domain (DUF836) Zn-ribbon_8 PF09723.10 gi|297526091|ref|YP_003668115.1| - 0.062 13.4 3.3 0.87 9.8 3.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|297526091|ref|YP_003668115.1| - 0.089 12.8 0.2 0.13 12.3 0.2 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|297526091|ref|YP_003668115.1| - 0.15 12.0 2.8 2.7 8.0 0.3 2.4 2 0 0 2 2 2 0 Nudix N-terminal Cys_rich_CPCC PF14206.6 gi|297526091|ref|YP_003668115.1| - 0.29 11.0 2.5 0.84 9.5 2.4 1.8 2 0 0 2 2 2 0 Cysteine-rich CPCC Auto_anti-p27 PF06677.12 gi|297526091|ref|YP_003668115.1| - 0.58 10.4 5.3 3.5 7.8 0.1 2.6 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prim_Zn_Ribbon PF08273.12 gi|297526091|ref|YP_003668115.1| - 1.7 9.0 4.9 16 5.8 0.7 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase OrfB_Zn_ribbon PF07282.11 gi|297526091|ref|YP_003668115.1| - 1.7 8.6 3.7 8 6.5 0.1 2.6 2 1 1 3 3 2 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.14 gi|297526091|ref|YP_003668115.1| - 3 7.8 5.9 3.9 7.4 0.2 3.0 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn-C2H2_12 PF18112.1 gi|297526091|ref|YP_003668115.1| - 5.5 7.5 6.0 38 4.9 0.6 2.5 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain NAD_kinase PF01513.21 gi|297526092|ref|YP_003668116.1| - 1.5e-27 96.6 0.1 1.8e-27 96.3 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|297526092|ref|YP_003668116.1| - 0.00022 20.9 0.0 0.00033 20.3 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Glyco_hydro_42M PF08532.10 gi|297526092|ref|YP_003668116.1| - 0.071 12.6 0.0 0.14 11.6 0.0 1.4 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain Met_10 PF02475.16 gi|297526093|ref|YP_003668117.1| - 2.4e-37 128.6 0.1 4.6e-37 127.7 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|297526093|ref|YP_003668117.1| - 5.8e-12 45.3 2.5 6.6e-12 45.1 0.1 2.4 3 0 0 3 3 3 1 tRNA methyltransferase 5 N-terminal domain Methyltr_RsmB-F PF01189.17 gi|297526093|ref|YP_003668117.1| - 0.00013 21.7 0.0 0.00024 20.8 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F tRNA_U5-meth_tr PF05958.11 gi|297526093|ref|YP_003668117.1| - 0.001 18.1 0.1 0.0035 16.4 0.0 1.8 2 0 0 2 2 2 1 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.17 gi|297526093|ref|YP_003668117.1| - 0.0062 15.9 0.0 0.0095 15.3 0.0 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase TRM PF02005.16 gi|297526093|ref|YP_003668117.1| - 0.044 13.0 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|297526093|ref|YP_003668117.1| - 0.048 13.3 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|297526093|ref|YP_003668117.1| - 0.051 13.2 0.1 0.1 12.2 0.0 1.6 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|297526093|ref|YP_003668117.1| - 0.078 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF371 PF04027.13 gi|297526094|ref|YP_003668118.1| - 1.3e-48 164.4 0.2 1.6e-48 164.1 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.19 gi|297526095|ref|YP_003668119.1| - 1.1e-69 234.4 0.0 1.3e-69 234.1 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|297526095|ref|YP_003668119.1| - 6.6e-08 32.5 0.0 8.7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|297526095|ref|YP_003668119.1| - 4.4e-06 26.6 0.0 6e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|297526095|ref|YP_003668119.1| - 2.6e-05 24.8 0.0 4.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|297526095|ref|YP_003668119.1| - 4.4e-05 24.5 0.0 6.6e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297526095|ref|YP_003668119.1| - 0.00036 21.1 0.0 0.00057 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|297526095|ref|YP_003668119.1| - 0.0016 17.7 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|297526095|ref|YP_003668119.1| - 0.011 14.9 0.0 0.013 14.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Met_10 PF02475.16 gi|297526095|ref|YP_003668119.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|297526095|ref|YP_003668119.1| - 0.013 15.5 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|297526095|ref|YP_003668119.1| - 0.027 14.1 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|297526095|ref|YP_003668119.1| - 0.04 13.9 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|297526095|ref|YP_003668119.1| - 0.072 12.9 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|297526095|ref|YP_003668119.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain XPG_I PF00867.18 gi|297526096|ref|YP_003668120.1| - 3.7e-26 91.3 0.0 6.7e-26 90.5 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|297526096|ref|YP_003668120.1| - 2.9e-22 79.1 0.0 5.5e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|297526096|ref|YP_003668120.1| - 3.5e-07 30.7 0.5 1.3e-06 28.9 0.0 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|297526096|ref|YP_003668120.1| - 2.1e-05 25.0 0.1 0.00073 20.1 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc_N PF02739.16 gi|297526096|ref|YP_003668120.1| - 0.0038 17.1 0.2 0.022 14.6 0.0 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain HHH_2 PF12826.7 gi|297526096|ref|YP_003668120.1| - 0.041 14.0 0.0 0.13 12.4 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif HTH_20 PF12840.7 gi|297526097|ref|YP_003668121.1| - 0.021 14.8 0.0 0.026 14.6 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|297526097|ref|YP_003668121.1| - 0.048 13.6 0.3 0.063 13.3 0.3 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family AAA PF00004.29 gi|297526098|ref|YP_003668122.1| - 7e-100 330.6 0.0 7e-50 168.9 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|297526098|ref|YP_003668122.1| - 3.5e-38 129.2 1.7 1.9e-18 66.0 0.2 2.9 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|297526098|ref|YP_003668122.1| - 2.8e-26 91.5 0.1 3e-25 88.2 0.8 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|297526098|ref|YP_003668122.1| - 6e-16 58.6 0.0 2e-07 30.9 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|297526098|ref|YP_003668122.1| - 1e-14 55.3 0.2 2.4e-06 28.0 0.0 3.9 2 2 1 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|297526098|ref|YP_003668122.1| - 1.6e-13 50.2 0.8 4.3e-13 48.8 0.2 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|297526098|ref|YP_003668122.1| - 3.5e-12 46.8 0.0 3.4e-06 27.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|297526098|ref|YP_003668122.1| - 9.6e-12 45.3 0.8 0.00016 22.0 0.1 4.2 2 2 0 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|297526098|ref|YP_003668122.1| - 3.4e-11 43.3 1.9 0.0002 21.4 0.0 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|297526098|ref|YP_003668122.1| - 8.1e-11 41.7 0.0 0.00013 21.4 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|297526098|ref|YP_003668122.1| - 2.2e-10 40.9 0.0 0.00048 20.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|297526098|ref|YP_003668122.1| - 4.9e-09 36.3 0.0 0.00082 19.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|297526098|ref|YP_003668122.1| - 8.2e-09 36.1 0.0 0.0059 17.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|297526098|ref|YP_003668122.1| - 4.1e-08 33.2 0.0 0.0097 15.7 0.0 2.6 2 1 0 2 2 2 2 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|297526098|ref|YP_003668122.1| - 3e-07 30.3 0.0 0.03 14.0 0.0 3.8 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|297526098|ref|YP_003668122.1| - 3.8e-07 30.0 0.1 0.021 14.6 0.0 2.6 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|297526098|ref|YP_003668122.1| - 5.4e-07 30.0 0.0 0.043 14.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|297526098|ref|YP_003668122.1| - 6.3e-07 29.0 0.6 0.037 13.4 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|297526098|ref|YP_003668122.1| - 9.5e-07 29.2 0.0 0.06 13.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|297526098|ref|YP_003668122.1| - 3.9e-06 26.4 0.9 0.18 11.1 0.0 3.5 2 1 0 3 3 3 2 KaiC Vps4_C PF09336.10 gi|297526098|ref|YP_003668122.1| - 4.1e-06 26.7 0.0 0.003 17.5 0.0 3.3 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain TsaE PF02367.17 gi|297526098|ref|YP_003668122.1| - 1e-05 25.5 0.0 0.21 11.6 0.0 2.8 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|297526098|ref|YP_003668122.1| - 2.4e-05 24.4 0.4 0.077 12.9 0.1 3.4 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|297526098|ref|YP_003668122.1| - 2.8e-05 23.4 0.0 0.16 11.1 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|297526098|ref|YP_003668122.1| - 3.1e-05 23.6 0.0 0.2 11.2 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|297526098|ref|YP_003668122.1| - 5.3e-05 22.4 0.2 0.23 10.5 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|297526098|ref|YP_003668122.1| - 6e-05 22.9 0.0 0.39 10.6 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|297526098|ref|YP_003668122.1| - 6.5e-05 22.5 1.2 0.48 9.8 0.1 3.1 3 0 0 3 3 3 2 PhoH-like protein NACHT PF05729.12 gi|297526098|ref|YP_003668122.1| - 0.00011 22.2 0.2 1.2 9.0 0.1 3.1 3 0 0 3 3 3 2 NACHT domain Zeta_toxin PF06414.12 gi|297526098|ref|YP_003668122.1| - 0.00022 20.5 0.1 0.58 9.4 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.6 gi|297526098|ref|YP_003668122.1| - 0.00024 20.7 3.9 1.2 8.7 0.2 3.6 3 1 0 4 4 3 2 AAA domain ABC_tran PF00005.27 gi|297526098|ref|YP_003668122.1| - 0.00032 21.2 0.0 1.3 9.6 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Bac_DnaA PF00308.18 gi|297526098|ref|YP_003668122.1| - 0.00064 19.6 0.0 0.35 10.7 0.0 3.1 2 2 0 2 2 2 1 Bacterial dnaA protein DUF2075 PF09848.9 gi|297526098|ref|YP_003668122.1| - 0.00075 18.8 0.0 0.61 9.3 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|297526098|ref|YP_003668122.1| - 0.00093 19.0 0.2 1.3 8.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|297526098|ref|YP_003668122.1| - 0.0012 18.1 0.0 1.2 8.2 0.0 2.6 3 0 0 3 3 2 2 NB-ARC domain AAA_11 PF13086.6 gi|297526098|ref|YP_003668122.1| - 0.0017 18.2 0.0 2.1 8.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|297526098|ref|YP_003668122.1| - 0.0022 18.3 1.7 2.3 8.5 0.1 3.0 2 1 1 3 3 3 1 AAA domain AAA_17 PF13207.6 gi|297526098|ref|YP_003668122.1| - 0.0042 17.5 0.0 5 7.6 0.0 3.0 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|297526098|ref|YP_003668122.1| - 0.0053 16.9 0.0 3 7.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AFG1_ATPase PF03969.16 gi|297526098|ref|YP_003668122.1| - 0.0071 15.3 0.1 4.6 6.0 0.0 2.8 3 0 0 3 3 3 0 AFG1-like ATPase Rad17 PF03215.15 gi|297526098|ref|YP_003668122.1| - 0.013 15.4 0.0 7.9 6.3 0.0 3.1 2 1 1 3 3 3 0 Rad17 P-loop domain IPT PF01745.16 gi|297526098|ref|YP_003668122.1| - 0.018 14.4 0.2 2.6 7.4 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase Guanylate_kin PF00625.21 gi|297526098|ref|YP_003668122.1| - 0.023 14.4 0.3 60 3.3 0.0 4.0 3 2 2 5 5 3 0 Guanylate kinase Cytidylate_kin PF02224.18 gi|297526098|ref|YP_003668122.1| - 0.024 14.3 0.1 8.3 6.1 0.0 2.9 2 0 0 2 2 2 0 Cytidylate kinase NTPase_1 PF03266.15 gi|297526098|ref|YP_003668122.1| - 0.035 14.0 2.9 11 5.9 0.0 3.9 3 1 1 4 4 4 0 NTPase Zot PF05707.12 gi|297526098|ref|YP_003668122.1| - 0.045 13.4 0.1 1.5 8.4 0.0 3.0 2 1 0 3 3 3 0 Zonular occludens toxin (Zot) ADSL_C PF10397.9 gi|297526098|ref|YP_003668122.1| - 0.051 14.1 0.3 0.43 11.2 0.1 2.6 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus cobW PF02492.19 gi|297526098|ref|YP_003668122.1| - 0.052 13.1 0.0 9 5.8 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|297526098|ref|YP_003668122.1| - 0.063 12.3 0.0 5.8 5.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein SKI PF01202.22 gi|297526098|ref|YP_003668122.1| - 0.075 13.1 0.1 15 5.6 0.0 2.8 3 0 0 3 3 2 0 Shikimate kinase AAA_29 PF13555.6 gi|297526098|ref|YP_003668122.1| - 0.14 11.9 0.0 23 4.8 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF3221 PF11518.8 gi|297526098|ref|YP_003668122.1| - 0.14 12.5 0.3 0.58 10.5 0.1 2.1 2 0 0 2 2 1 0 Protein of unknown function (DUF3221) PduV-EutP PF10662.9 gi|297526098|ref|YP_003668122.1| - 0.15 11.8 0.0 8.7 6.1 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|297526098|ref|YP_003668122.1| - 0.2 11.4 0.0 9 6.0 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase EF1_GNE PF00736.19 gi|297526099|ref|YP_003668123.1| - 2.7e-19 69.1 0.1 3e-19 69.0 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain RNR_inhib PF08591.10 gi|297526099|ref|YP_003668123.1| - 0.14 13.5 0.0 0.17 13.2 0.0 1.3 1 1 0 1 1 1 0 Ribonucleotide reductase inhibitor DUF1610 PF07754.11 gi|297526100|ref|YP_003668124.1| - 2e-11 43.6 12.7 1.2e-09 37.9 4.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-CHY PF05495.12 gi|297526100|ref|YP_003668124.1| - 9e-05 22.9 4.3 0.00011 22.7 4.3 1.2 1 0 0 1 1 1 1 CHY zinc finger DZR PF12773.7 gi|297526100|ref|YP_003668124.1| - 0.00024 21.1 20.5 0.0016 18.4 11.4 2.1 1 1 1 2 2 2 2 Double zinc ribbon zf_UBZ PF18439.1 gi|297526100|ref|YP_003668124.1| - 0.012 15.2 15.7 0.78 9.4 0.5 4.0 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger DUF1272 PF06906.11 gi|297526100|ref|YP_003668124.1| - 0.014 15.4 10.9 2.5 8.3 10.9 3.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-UDP PF14569.6 gi|297526100|ref|YP_003668124.1| - 0.021 15.0 4.7 0.025 14.7 4.7 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger OrfB_Zn_ribbon PF07282.11 gi|297526100|ref|YP_003668124.1| - 0.036 14.0 10.1 0.059 13.3 2.2 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|297526100|ref|YP_003668124.1| - 0.053 13.0 2.5 0.053 13.0 2.5 3.3 3 1 0 3 3 3 0 TFIIB zinc-binding HypA PF01155.19 gi|297526100|ref|YP_003668124.1| - 0.079 13.0 8.4 0.14 12.2 0.4 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_9 PF13901.6 gi|297526100|ref|YP_003668124.1| - 0.08 12.9 5.8 0.097 12.6 5.8 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon zinc_ribbon_10 PF10058.9 gi|297526100|ref|YP_003668124.1| - 0.086 12.6 15.0 0.62 9.8 2.3 3.6 2 2 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|297526100|ref|YP_003668124.1| - 0.088 12.7 15.3 1.1 9.2 2.0 4.1 3 1 0 3 3 3 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|297526100|ref|YP_003668124.1| - 0.35 8.7 3.3 0.33 8.7 3.3 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.11 gi|297526100|ref|YP_003668124.1| - 0.37 11.0 9.4 0.1 12.8 3.3 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|297526100|ref|YP_003668124.1| - 0.39 10.2 17.6 1 8.9 0.7 3.5 3 1 0 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|297526100|ref|YP_003668124.1| - 0.48 10.2 11.8 1.5 8.6 0.2 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain Rubredoxin_2 PF18073.1 gi|297526100|ref|YP_003668124.1| - 0.52 10.1 0.3 0.52 10.1 0.3 4.0 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-MYND PF01753.18 gi|297526100|ref|YP_003668124.1| - 0.79 9.9 9.4 1.4 9.0 0.3 2.5 1 1 1 3 3 3 0 MYND finger zinc_ribbon_15 PF17032.5 gi|297526100|ref|YP_003668124.1| - 0.79 10.5 9.9 0.62 10.9 0.4 2.4 1 1 1 2 2 2 0 zinc-ribbon family DUF2321 PF10083.9 gi|297526100|ref|YP_003668124.1| - 1 9.0 7.8 0.11 12.2 2.8 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) FYVE_2 PF02318.16 gi|297526100|ref|YP_003668124.1| - 1 9.6 5.2 2.3 8.5 5.2 1.6 1 1 0 1 1 1 0 FYVE-type zinc finger zinc_ribbon_2 PF13240.6 gi|297526100|ref|YP_003668124.1| - 1 9.2 21.9 1.9 8.3 4.0 4.0 2 2 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|297526100|ref|YP_003668124.1| - 1.1 9.6 14.4 0.9 9.8 2.4 2.9 1 1 2 3 3 3 0 Ribosomal L32p protein family zf-AN1 PF01428.16 gi|297526100|ref|YP_003668124.1| - 1.2 9.3 12.4 3.4 7.9 2.6 2.7 2 1 1 3 3 3 0 AN1-like Zinc finger DUF35_N PF12172.8 gi|297526100|ref|YP_003668124.1| - 1.4 8.9 18.6 0.24 11.3 4.3 3.7 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Acetone_carb_G PF08882.11 gi|297526100|ref|YP_003668124.1| - 1.6 8.9 3.7 3.5 7.8 0.2 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zinc_ribbon_9 PF14369.6 gi|297526100|ref|YP_003668124.1| - 2.2 8.6 14.0 0.57 10.5 4.5 2.6 1 1 1 2 2 2 0 zinc-ribbon zf-Mss51 PF13824.6 gi|297526100|ref|YP_003668124.1| - 2.3 8.4 11.4 4.8 7.4 1.7 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|297526100|ref|YP_003668124.1| - 2.6 8.2 16.6 3.6 7.8 2.5 3.6 1 1 2 3 3 3 0 Zinc ribbon domain zf-ACC PF17848.1 gi|297526100|ref|YP_003668124.1| - 3.4 7.8 0.0 3.4 7.8 0.0 3.8 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-HIT PF04438.16 gi|297526100|ref|YP_003668124.1| - 4.9 7.1 14.3 9.1 6.3 6.1 3.3 3 1 0 3 3 3 0 HIT zinc finger Nudix_N_2 PF14803.6 gi|297526100|ref|YP_003668124.1| - 5.2 7.1 16.5 7.6 6.6 0.2 3.8 2 1 1 4 4 4 0 Nudix N-terminal TackOD1 PF18551.1 gi|297526100|ref|YP_003668124.1| - 7.5 6.2 11.1 5.1 6.7 3.5 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-B_box PF00643.24 gi|297526100|ref|YP_003668124.1| - 7.9 6.7 15.2 1 9.5 5.2 2.6 1 1 1 2 2 2 0 B-box zinc finger Nop10p PF04135.12 gi|297526100|ref|YP_003668124.1| - 8 6.6 10.6 0.29 11.2 1.7 2.5 2 1 1 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family PTH2 PF01981.16 gi|297526101|ref|YP_003668125.1| - 8.5e-39 132.5 0.0 9.4e-39 132.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TruD PF01142.18 gi|297526102|ref|YP_003668126.1| - 2.3e-49 168.3 1.7 4.7e-44 150.9 2.4 2.9 2 1 0 2 2 2 2 tRNA pseudouridine synthase D (TruD) Ribosomal_S7e PF01251.18 gi|297526103|ref|YP_003668127.1| - 0.00015 21.6 0.5 0.028 14.2 0.0 2.2 1 1 1 2 2 2 2 Ribosomal protein S7e DHHA1 PF02272.19 gi|297526103|ref|YP_003668127.1| - 0.016 15.6 0.7 0.024 15.1 0.7 1.2 1 0 0 1 1 1 0 DHHA1 domain GvpK PF05121.12 gi|297526103|ref|YP_003668127.1| - 0.087 12.9 0.0 0.47 10.5 0.0 2.0 2 0 0 2 2 2 0 Gas vesicle protein K GPHR_N PF12537.8 gi|297526104|ref|YP_003668128.1| - 0.11 12.5 3.0 0.1 12.7 0.9 2.1 2 0 0 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal ABC_tran PF00005.27 gi|297526105|ref|YP_003668129.1| - 1.8e-28 99.8 0.0 9.6e-28 97.4 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|297526105|ref|YP_003668129.1| - 5e-15 56.1 1.3 1.5e-10 41.4 0.0 2.6 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system KdpD PF02702.17 gi|297526105|ref|YP_003668129.1| - 2.1e-05 24.1 0.4 5.6e-05 22.7 0.2 1.7 1 1 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain AAA_15 PF13175.6 gi|297526105|ref|YP_003668129.1| - 0.00019 21.2 0.1 0.079 12.6 0.0 2.7 2 1 1 3 3 3 2 AAA ATPase domain DUF4162 PF13732.6 gi|297526105|ref|YP_003668129.1| - 0.0015 19.2 0.3 0.0036 18.0 0.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) Rad17 PF03215.15 gi|297526105|ref|YP_003668129.1| - 0.0016 18.4 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|297526105|ref|YP_003668129.1| - 0.0026 18.3 0.1 0.0083 16.6 0.1 1.8 2 1 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|297526105|ref|YP_003668129.1| - 0.036 12.7 0.1 0.24 10.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|297526105|ref|YP_003668129.1| - 0.041 14.3 0.3 0.22 12.0 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|297526105|ref|YP_003668129.1| - 0.073 12.5 0.4 3.4 7.1 0.0 2.4 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF520 PF04461.13 gi|297526105|ref|YP_003668129.1| - 0.093 12.8 0.3 0.26 11.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF520) MFS_2 PF13347.6 gi|297526106|ref|YP_003668130.1| - 7.4e-59 199.4 34.7 9.7e-59 199.0 34.7 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 gi|297526106|ref|YP_003668130.1| - 2e-16 59.9 41.5 3.5e-08 32.7 24.0 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily PIRT PF15099.6 gi|297526106|ref|YP_003668130.1| - 2.5 7.7 8.5 0.14 11.8 1.0 2.5 2 1 1 3 3 3 0 Phosphoinositide-interacting protein family PIG-L PF02585.17 gi|297526107|ref|YP_003668131.1| - 4.4e-28 98.5 0.0 7.1e-28 97.8 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase ETC_C1_NDUFA5 PF04716.14 gi|297526107|ref|YP_003668131.1| - 0.089 12.6 0.1 0.23 11.3 0.1 1.7 1 0 0 1 1 1 0 ETC complex I subunit conserved region NAGidase PF07555.13 gi|297526108|ref|YP_003668132.1| - 1.5e-89 300.2 0.0 2e-89 299.8 0.0 1.2 1 0 0 1 1 1 1 beta-N-acetylglucosaminidase Acetyltransf_1 PF00583.25 gi|297526109|ref|YP_003668133.1| - 1.5e-07 31.6 1.3 0.00011 22.4 0.1 2.7 2 1 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|297526109|ref|YP_003668133.1| - 1.4e-05 25.5 0.3 0.00054 20.3 0.1 2.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|297526109|ref|YP_003668133.1| - 0.0015 18.6 0.0 0.018 15.1 0.0 2.5 3 0 0 3 3 3 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|297526109|ref|YP_003668133.1| - 0.0037 17.3 0.0 0.22 11.6 0.0 2.8 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|297526109|ref|YP_003668133.1| - 0.004 17.1 0.0 0.4 10.6 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain UPF0113 PF03657.13 gi|297526109|ref|YP_003668133.1| - 0.0068 16.7 0.1 7.2 7.0 0.0 2.8 2 1 0 2 2 2 2 UPF0113 PUA domain Acetyltransf_4 PF13420.7 gi|297526109|ref|YP_003668133.1| - 0.14 12.3 3.2 0.18 11.9 1.6 2.0 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain SAM_DrpA PF18255.1 gi|297526109|ref|YP_003668133.1| - 0.21 11.8 3.8 0.38 11.0 0.1 3.0 3 0 0 3 3 3 0 DNA processing protein A sterile alpha motif domain Glyco_hydro_4 PF02056.16 gi|297526110|ref|YP_003668134.1| - 5e-47 159.8 0.1 8.1e-47 159.1 0.1 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|297526110|ref|YP_003668134.1| - 5.1e-43 147.6 0.0 9.9e-43 146.6 0.0 1.5 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|297526110|ref|YP_003668134.1| - 0.009 16.1 0.2 6.2 6.9 0.1 2.4 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain HupE_UreJ_2 PF13795.6 gi|297526110|ref|YP_003668134.1| - 0.061 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 HupE / UreJ protein OTCace PF00185.24 gi|297526110|ref|YP_003668134.1| - 0.13 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Nitro_FeMo-Co PF02579.17 gi|297526111|ref|YP_003668135.1| - 6.9e-20 71.2 0.1 7.8e-20 71.0 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.23 gi|297526112|ref|YP_003668136.1| - 3.9e-21 75.4 0.0 5.4e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|297526112|ref|YP_003668136.1| - 5.5e-18 65.3 0.1 3.9e-10 39.6 0.0 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|297526112|ref|YP_003668136.1| - 1e-12 47.3 14.8 2.9e-08 33.2 5.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297526112|ref|YP_003668136.1| - 3.4e-11 43.6 2.9 2.9e-06 27.8 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297526112|ref|YP_003668136.1| - 4.8e-10 39.1 13.1 1.4e-06 28.1 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297526112|ref|YP_003668136.1| - 1.8e-09 37.6 11.6 2.3e-09 37.3 10.6 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297526112|ref|YP_003668136.1| - 4e-09 37.3 4.0 0.0016 19.3 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|297526112|ref|YP_003668136.1| - 4.3e-09 35.9 10.8 5.6e-05 23.0 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297526112|ref|YP_003668136.1| - 1.1e-08 35.1 11.6 4.2e-07 30.0 12.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|297526112|ref|YP_003668136.1| - 1.4e-07 31.5 10.8 2.5e-07 30.8 10.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|297526112|ref|YP_003668136.1| - 1.3e-06 28.4 0.0 9.8e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|297526112|ref|YP_003668136.1| - 1.9e-06 27.3 0.3 7.2e-06 25.4 0.1 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|297526112|ref|YP_003668136.1| - 2.9e-05 23.7 0.0 0.2 11.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|297526112|ref|YP_003668136.1| - 3.7e-05 23.3 0.0 0.12 11.8 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_3 PF12798.7 gi|297526112|ref|YP_003668136.1| - 5.3e-05 23.9 16.7 0.003 18.4 4.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|297526112|ref|YP_003668136.1| - 0.0042 17.9 4.9 0.65 10.9 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|297526112|ref|YP_003668136.1| - 0.0075 16.8 1.4 0.0075 16.8 1.4 2.4 1 1 2 3 3 3 1 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|297526112|ref|YP_003668136.1| - 0.0091 15.9 0.6 1.7 8.6 0.3 2.3 2 0 0 2 2 2 1 RsgA GTPase Fer4_4 PF12800.7 gi|297526112|ref|YP_003668136.1| - 0.011 16.2 3.9 0.011 16.2 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain MipZ PF09140.11 gi|297526112|ref|YP_003668136.1| - 0.024 13.9 0.1 0.037 13.3 0.1 1.2 1 0 0 1 1 1 0 ATPase MipZ Fer4_8 PF13183.6 gi|297526112|ref|YP_003668136.1| - 0.026 15.0 15.2 10 6.7 15.2 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|297526112|ref|YP_003668136.1| - 0.042 13.4 0.1 0.073 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|297526112|ref|YP_003668136.1| - 0.044 13.3 0.0 0.56 9.7 0.0 2.5 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain Bul1_N PF04425.12 gi|297526112|ref|YP_003668136.1| - 0.081 11.7 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Bul1 N terminus Fer4_13 PF13370.6 gi|297526112|ref|YP_003668136.1| - 1.2 9.8 10.6 0.18 12.4 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|297526112|ref|YP_003668136.1| - 2.3 8.5 10.6 0.82 9.9 2.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain CbiA PF01656.23 gi|297526113|ref|YP_003668137.1| - 8e-20 71.2 0.0 9.7e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|297526113|ref|YP_003668137.1| - 2.8e-14 53.2 0.9 1.7e-08 34.2 0.0 3.0 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|297526113|ref|YP_003668137.1| - 2.5e-13 49.2 13.1 1.7e-06 27.6 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|297526113|ref|YP_003668137.1| - 9.7e-11 41.3 12.0 1.4e-05 24.9 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|297526113|ref|YP_003668137.1| - 1.8e-08 34.4 3.9 0.0012 18.9 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|297526113|ref|YP_003668137.1| - 1.2e-07 31.7 3.3 0.0037 17.3 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297526113|ref|YP_003668137.1| - 1.4e-07 32.4 7.0 0.0036 18.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|297526113|ref|YP_003668137.1| - 3.6e-07 30.2 6.6 6.2e-07 29.5 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297526113|ref|YP_003668137.1| - 1.5e-06 27.9 11.3 0.0036 17.3 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297526113|ref|YP_003668137.1| - 2.1e-06 28.2 12.3 1.5e-05 25.4 13.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain AAA_31 PF13614.6 gi|297526113|ref|YP_003668137.1| - 1e-05 25.5 0.1 0.0076 16.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_8 PF13183.6 gi|297526113|ref|YP_003668137.1| - 0.00012 22.4 3.6 0.21 12.0 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|297526113|ref|YP_003668137.1| - 0.0002 21.8 5.7 0.097 13.2 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|297526113|ref|YP_003668137.1| - 0.00041 20.6 16.1 0.0085 16.5 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain CBP_BcsQ PF06564.12 gi|297526113|ref|YP_003668137.1| - 0.016 14.7 0.0 3.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Fer4_15 PF13459.6 gi|297526113|ref|YP_003668137.1| - 0.02 15.7 3.8 2.2 9.1 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_25 PF13481.6 gi|297526113|ref|YP_003668137.1| - 0.027 14.0 0.1 0.098 12.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 gi|297526113|ref|YP_003668137.1| - 0.028 13.6 0.8 0.057 12.6 0.1 1.8 2 1 0 2 2 2 0 Anion-transporting ATPase MipZ PF09140.11 gi|297526113|ref|YP_003668137.1| - 0.037 13.3 0.2 0.076 12.3 0.0 1.5 2 0 0 2 2 2 0 ATPase MipZ NAD_binding_10 PF13460.6 gi|297526113|ref|YP_003668137.1| - 0.04 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding Fer4_NifH PF00142.18 gi|297526113|ref|YP_003668137.1| - 0.045 13.2 0.2 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.16 gi|297526113|ref|YP_003668137.1| - 0.058 12.8 0.2 0.15 11.5 0.2 1.7 1 0 0 1 1 1 0 PhoH-like protein Fer4_3 PF12798.7 gi|297526113|ref|YP_003668137.1| - 0.11 13.5 17.6 0.18 12.8 5.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_30 PF13604.6 gi|297526113|ref|YP_003668137.1| - 0.18 11.5 1.1 11 5.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain Fer4_22 PF17179.4 gi|297526113|ref|YP_003668137.1| - 1.6 9.6 6.8 5.6 7.9 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|297526113|ref|YP_003668137.1| - 3.5 8.2 14.8 8.9 6.9 4.8 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF4065 PF13274.6 gi|297526114|ref|YP_003668138.1| - 0.00029 21.7 0.5 0.00085 20.2 0.5 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4065) GDPD PF03009.17 gi|297526115|ref|YP_003668139.1| - 9.6e-07 28.8 0.1 2e-06 27.7 0.1 1.6 2 1 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|297526115|ref|YP_003668139.1| - 0.1 13.1 0.1 0.25 11.9 0.1 1.7 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family EamA PF00892.20 gi|297526116|ref|YP_003668140.1| - 2.6e-39 134.5 33.3 5.7e-20 71.9 11.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|297526116|ref|YP_003668140.1| - 3.5e-06 26.6 6.6 0.0028 17.0 1.3 2.1 1 1 1 2 2 2 2 Triose-phosphate Transporter family DUF2070 PF09843.9 gi|297526116|ref|YP_003668140.1| - 2 6.6 13.9 0.058 11.7 7.5 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) NTP_transf_2 PF01909.23 gi|297526117|ref|YP_003668141.1| - 6.1e-11 42.5 0.4 1.2e-10 41.5 0.4 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|297526117|ref|YP_003668141.1| - 2.4e-07 30.7 0.0 4.6e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|297526117|ref|YP_003668141.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.6 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 CinA_KH PF18146.1 gi|297526117|ref|YP_003668141.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain HEPN PF05168.14 gi|297526118|ref|YP_003668142.1| - 2.8e-22 79.1 0.3 3.4e-22 78.8 0.3 1.0 1 0 0 1 1 1 1 HEPN domain MFS_1 PF07690.16 gi|297526119|ref|YP_003668143.1| - 7.6e-20 71.1 46.6 1.2e-19 70.5 46.6 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily PNP_UDP_1 PF01048.20 gi|297526120|ref|YP_003668144.1| - 3.4e-31 108.3 0.0 4e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ADH_N PF08240.12 gi|297526121|ref|YP_003668145.1| - 4.6e-31 106.9 1.3 7.1e-31 106.3 1.3 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|297526121|ref|YP_003668145.1| - 1.6e-16 60.5 0.0 2.9e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|297526121|ref|YP_003668145.1| - 4e-13 49.3 0.0 6e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N_assoc PF13823.6 gi|297526121|ref|YP_003668145.1| - 1.3e-05 25.0 0.0 4.9e-05 23.2 0.0 2.1 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.6 gi|297526121|ref|YP_003668145.1| - 0.001 20.1 0.1 0.0031 18.5 0.1 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Radical_SAM PF04055.21 gi|297526122|ref|YP_003668146.1| - 1.3e-15 58.2 0.1 2.8e-15 57.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|297526122|ref|YP_003668146.1| - 0.019 14.3 7.3 0.24 10.9 0.0 3.5 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|297526122|ref|YP_003668146.1| - 0.051 13.6 0.1 0.051 13.6 0.1 2.8 3 1 0 3 3 3 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|297526122|ref|YP_003668146.1| - 0.071 12.6 5.3 8.9 5.9 0.0 3.8 4 0 0 4 4 4 0 TFIIB zinc-binding DiS_P_DiS PF06750.13 gi|297526122|ref|YP_003668146.1| - 0.12 12.5 0.5 0.12 12.5 0.5 1.9 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_2 PF13240.6 gi|297526122|ref|YP_003668146.1| - 0.8 9.5 10.2 2.1 8.2 0.4 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|297526122|ref|YP_003668146.1| - 1.4 8.6 5.7 20 4.9 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF3797 PF12677.7 gi|297526122|ref|YP_003668146.1| - 3.4 7.6 9.6 30 4.6 3.5 3.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1595 PF12760.7 gi|297526122|ref|YP_003668146.1| - 5.5 7.1 16.9 6.9 6.7 0.7 3.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-LITAF-like PF10601.9 gi|297526122|ref|YP_003668146.1| - 5.5 7.3 10.6 2.9 8.2 0.1 3.7 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|297526122|ref|YP_003668146.1| - 7.2 6.6 10.9 0.12 12.3 2.6 2.4 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf_C2H2_10 PF18414.1 gi|297526122|ref|YP_003668146.1| - 10 5.8 10.1 3.5 7.2 0.2 3.3 3 0 0 3 3 3 0 C2H2 type zinc-finger DUF2204 PF09970.9 gi|297526123|ref|YP_003668147.1| - 8.9e-66 221.0 1.4 1e-65 220.8 1.4 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) ApoB100_C PF12491.8 gi|297526123|ref|YP_003668147.1| - 0.12 12.3 0.8 0.28 11.2 0.1 1.9 2 0 0 2 2 2 0 Apolipoprotein B100 C terminal NTP_transf_5 PF14907.6 gi|297526123|ref|YP_003668147.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.4 1 1 0 1 1 1 0 Uncharacterised nucleotidyltransferase DUF308 PF03729.13 gi|297526124|ref|YP_003668148.1| - 0.01 16.1 1.5 0.011 16.0 1.5 1.0 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) Ribosomal_L40e PF01020.17 gi|297526126|ref|YP_003668150.1| - 7.1e-08 32.2 4.5 8e-08 32.1 4.5 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|297526126|ref|YP_003668150.1| - 0.0014 18.3 3.1 0.002 17.8 3.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|297526126|ref|YP_003668150.1| - 0.0015 17.8 4.8 0.0015 17.8 4.8 1.5 1 1 1 2 2 2 2 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|297526126|ref|YP_003668150.1| - 0.0021 18.0 0.6 0.0022 18.0 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|297526126|ref|YP_003668150.1| - 0.003 17.4 3.3 0.0039 17.0 3.3 1.1 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|297526126|ref|YP_003668150.1| - 0.0036 17.3 0.2 0.0037 17.3 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|297526126|ref|YP_003668150.1| - 0.0077 15.9 0.2 0.0083 15.8 0.2 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|297526126|ref|YP_003668150.1| - 0.022 14.2 3.2 0.029 13.8 3.2 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DUF2688 PF10892.8 gi|297526126|ref|YP_003668150.1| - 0.55 9.8 5.2 7.8 6.0 1.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zf-ACC PF17848.1 gi|297526126|ref|YP_003668150.1| - 0.73 10.0 7.2 1.6 8.9 1.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-CCHC_2 PF13696.6 gi|297526126|ref|YP_003668150.1| - 3.8 7.4 9.2 5.8 6.8 0.7 2.2 2 0 0 2 2 2 0 Zinc knuckle GDPD PF03009.17 gi|297526127|ref|YP_003668151.1| - 1.8e-28 100.0 0.0 1.6e-26 93.6 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|297526127|ref|YP_003668151.1| - 0.0048 17.3 0.0 0.037 14.5 0.0 2.2 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|297526127|ref|YP_003668151.1| - 0.061 12.9 0.1 0.54 9.8 0.0 2.1 2 0 0 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain Peptidase_C15 PF01470.17 gi|297526128|ref|YP_003668152.1| - 4.3e-09 36.8 0.0 5.7e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Pyroglutamyl peptidase UPF0180 PF03698.13 gi|297526128|ref|YP_003668152.1| - 0.18 12.0 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) N6_N4_Mtase PF01555.18 gi|297526129|ref|YP_003668153.1| - 1.5e-41 142.6 0.0 2.1e-41 142.1 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_25 PF13649.6 gi|297526129|ref|YP_003668153.1| - 5e-07 30.4 0.0 0.02 15.6 0.0 3.5 4 0 0 4 4 4 2 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297526129|ref|YP_003668153.1| - 1.7e-06 28.6 0.0 0.029 15.0 0.0 2.7 2 1 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.18 gi|297526129|ref|YP_003668153.1| - 0.00043 20.0 0.0 0.005 16.5 0.0 2.1 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|297526129|ref|YP_003668153.1| - 0.00084 19.2 0.0 0.042 13.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Phage_attach PF05354.11 gi|297526129|ref|YP_003668153.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Phage Head-Tail Attachment Met_10 PF02475.16 gi|297526129|ref|YP_003668153.1| - 0.14 11.8 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein FinO_N PF12602.8 gi|297526129|ref|YP_003668153.1| - 0.15 12.4 0.7 3.7 7.9 0.2 2.3 2 0 0 2 2 2 0 Fertility inhibition protein N terminal TFIIE_alpha PF02002.17 gi|297526132|ref|YP_003668156.1| - 8.9e-05 22.3 1.0 0.00042 20.1 0.1 2.3 2 1 0 2 2 2 1 TFIIE alpha subunit TrmB PF01978.19 gi|297526132|ref|YP_003668156.1| - 0.018 14.9 0.3 0.037 13.9 0.3 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2582 PF10771.9 gi|297526132|ref|YP_003668156.1| - 0.025 14.7 0.0 0.071 13.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) DUF4423 PF14394.6 gi|297526132|ref|YP_003668156.1| - 0.085 12.6 2.1 0.33 10.7 0.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4423) DUF1841 PF08897.11 gi|297526134|ref|YP_003668158.1| - 0.011 15.7 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1841) HEPN PF05168.14 gi|297526135|ref|YP_003668159.1| - 3.6e-24 85.2 0.1 4.6e-24 84.8 0.1 1.1 1 0 0 1 1 1 1 HEPN domain Polbeta PF18765.1 gi|297526136|ref|YP_003668160.1| - 9.5e-10 38.4 0.6 1.3e-09 38.0 0.6 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|297526136|ref|YP_003668160.1| - 4.7e-09 36.4 0.0 5.7e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.7 gi|297526136|ref|YP_003668160.1| - 0.0022 18.0 0.0 0.0024 17.8 0.0 1.1 1 0 0 1 1 1 1 Adenylate cyclase NT domain DNA_pol_B_palm PF14792.6 gi|297526136|ref|YP_003668160.1| - 0.13 12.5 0.0 0.16 12.2 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase beta palm Transglut_core PF01841.19 gi|297526137|ref|YP_003668161.1| - 0.00011 22.6 0.0 0.00088 19.7 0.0 2.3 1 1 1 2 2 2 1 Transglutaminase-like superfamily NCE101 PF11654.8 gi|297526138|ref|YP_003668162.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Non-classical export protein 1 Big_7 PF17957.1 gi|297526138|ref|YP_003668162.1| - 0.025 15.3 2.1 0.061 14.1 1.7 1.9 1 1 0 1 1 1 0 Bacterial Ig domain MazE_antitoxin PF04014.18 gi|297526141|ref|YP_003668165.1| - 3.1e-09 36.6 0.0 5.4e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|297526141|ref|YP_003668165.1| - 6.5e-05 23.3 0.0 9.4e-05 22.8 0.0 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin Chaperone_III PF07824.12 gi|297526141|ref|YP_003668165.1| - 0.023 14.9 0.0 0.03 14.5 0.0 1.2 1 0 0 1 1 1 0 Type III secretion chaperone domain ExbD PF02472.16 gi|297526141|ref|YP_003668165.1| - 0.12 12.5 0.0 0.13 12.4 0.0 1.2 1 1 0 1 1 1 0 Biopolymer transport protein ExbD/TolR PHO4 PF01384.20 gi|297526142|ref|YP_003668166.1| - 3.1e-72 243.5 40.2 3.7e-72 243.2 40.2 1.1 1 0 0 1 1 1 1 Phosphate transporter family DUF4326 PF14216.6 gi|297526143|ref|YP_003668167.1| - 0.11 13.2 0.0 1.1 10.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4326) AFOR_C PF01314.18 gi|297526144|ref|YP_003668168.1| - 5.4e-146 486.5 0.0 6.7e-146 486.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|297526144|ref|YP_003668168.1| - 3.9e-77 258.6 0.0 9.3e-77 257.4 0.0 1.6 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain EamA PF00892.20 gi|297526145|ref|YP_003668169.1| - 2.7e-24 85.9 55.5 3.7e-16 59.6 21.5 2.4 2 1 0 2 2 2 2 EamA-like transporter family B12-binding PF02310.19 gi|297526146|ref|YP_003668170.1| - 3.1e-24 85.3 0.0 6e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 gi|297526146|ref|YP_003668170.1| - 5.1e-22 79.0 0.2 2.1e-21 77.0 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|297526146|ref|YP_003668170.1| - 0.00016 22.0 0.1 0.00042 20.6 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM_N PF08497.10 gi|297526146|ref|YP_003668170.1| - 0.0054 16.0 0.0 0.96 8.6 0.0 2.4 2 0 0 2 2 2 2 Radical SAM N-terminal Fer4_14 PF13394.6 gi|297526146|ref|YP_003668170.1| - 0.025 14.7 0.1 0.081 13.1 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Pneumo_ncap PF03246.13 gi|297526146|ref|YP_003668170.1| - 0.071 11.9 0.0 0.19 10.4 0.0 1.6 2 0 0 2 2 2 0 Pneumovirus nucleocapsid protein Radical_SAM PF04055.21 gi|297526147|ref|YP_003668171.1| - 7.5e-26 91.5 0.0 1.5e-25 90.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|297526147|ref|YP_003668171.1| - 1.6e-09 38.1 0.0 1e-08 35.5 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|297526147|ref|YP_003668171.1| - 1.2e-07 32.1 0.3 3e-07 30.8 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|297526147|ref|YP_003668171.1| - 8.3e-07 29.2 0.0 3.4e-06 27.2 0.0 2.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|297526147|ref|YP_003668171.1| - 0.00015 21.4 0.0 0.00024 20.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|297526147|ref|YP_003668171.1| - 0.014 14.9 0.0 0.043 13.2 0.0 1.8 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Usp PF00582.26 gi|297526148|ref|YP_003668172.1| - 5.2e-24 85.4 0.5 6.8e-24 85.0 0.5 1.2 1 0 0 1 1 1 1 Universal stress protein family SBF PF01758.16 gi|297526149|ref|YP_003668173.1| - 1.1e-38 132.9 26.6 1.1e-38 132.9 26.6 3.3 3 1 0 3 3 3 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|297526149|ref|YP_003668173.1| - 5.8e-16 58.7 26.9 1.1e-15 57.7 26.9 1.5 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Sec62 PF03839.16 gi|297526149|ref|YP_003668173.1| - 0.03 13.9 6.5 0.083 12.4 6.5 1.7 1 0 0 1 1 1 0 Translocation protein Sec62 ApoO PF09769.9 gi|297526149|ref|YP_003668173.1| - 0.047 13.7 0.3 0.13 12.3 0.3 1.7 1 0 0 1 1 1 0 Apolipoprotein O Na_H_Exchanger PF00999.21 gi|297526150|ref|YP_003668174.1| - 9.8e-48 162.8 46.7 1.2e-47 162.6 46.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CitMHS PF03600.16 gi|297526151|ref|YP_003668175.1| - 6.3e-46 156.9 21.8 6.3e-46 156.9 21.8 1.8 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|297526151|ref|YP_003668175.1| - 1.2e-11 44.4 35.2 6e-06 25.6 15.6 2.2 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region DctM PF06808.12 gi|297526151|ref|YP_003668175.1| - 2.6e-06 26.5 33.5 0.00027 19.9 8.0 2.2 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component NADHdh PF00146.21 gi|297526152|ref|YP_003668176.1| - 4.4e-65 219.9 22.7 5.4e-65 219.6 22.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Glucos_trans_II PF14264.6 gi|297526153|ref|YP_003668177.1| - 0.0003 20.2 1.4 0.00033 20.1 1.4 1.0 1 0 0 1 1 1 1 Glucosyl transferase GtrII Yip1 PF04893.17 gi|297526153|ref|YP_003668177.1| - 0.0006 19.6 0.9 0.6 9.8 0.1 2.0 2 0 0 2 2 2 2 Yip1 domain MNHE PF01899.16 gi|297526154|ref|YP_003668178.1| - 2e-37 128.1 3.1 2.4e-37 128.0 3.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DUF3792 PF12670.7 gi|297526154|ref|YP_003668178.1| - 0.032 14.4 5.7 0.045 13.9 5.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) ANAPC10 PF03256.16 gi|297526154|ref|YP_003668178.1| - 0.044 13.4 0.0 0.086 12.5 0.1 1.5 2 0 0 2 2 2 0 Anaphase-promoting complex, subunit 10 (APC10) Pex2_Pex12 PF04757.14 gi|297526154|ref|YP_003668178.1| - 0.33 10.5 2.7 6.4 6.3 0.0 2.1 1 1 1 2 2 2 0 Pex2 / Pex12 amino terminal region DPM3 PF08285.11 gi|297526154|ref|YP_003668178.1| - 4.2 7.6 5.8 4.7 7.5 2.5 2.3 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Oxidored_q2 PF00420.24 gi|297526155|ref|YP_003668179.1| - 2.2e-19 69.0 3.9 2.7e-19 68.7 3.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2207 PF09972.9 gi|297526155|ref|YP_003668179.1| - 3.1 6.5 4.2 0.78 8.4 0.1 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) MnhB PF04039.13 gi|297526156|ref|YP_003668180.1| - 4.9e-15 55.9 16.0 4.9e-15 55.9 16.0 2.3 2 2 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|297526156|ref|YP_003668180.1| - 0.015 14.9 0.0 0.015 14.9 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2106) PGF-CTERM PF18204.1 gi|297526156|ref|YP_003668180.1| - 0.52 10.4 3.9 1.8 8.7 0.9 3.0 1 1 1 2 2 2 0 PGF-CTERM motif DUF4040 PF13244.6 gi|297526157|ref|YP_003668181.1| - 1.2e-10 41.4 9.3 1.6e-10 40.9 9.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|297526157|ref|YP_003668181.1| - 0.005 16.6 1.9 0.005 16.6 1.9 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TCR_zetazeta PF11628.8 gi|297526157|ref|YP_003668181.1| - 0.0086 15.7 2.0 0.0086 15.7 2.0 1.9 2 0 0 2 2 2 1 T-cell surface glycoprotein CD3 zeta chain DUF2070 PF09843.9 gi|297526157|ref|YP_003668181.1| - 0.022 13.0 6.3 0.022 13.0 6.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Rnf-Nqr PF02508.14 gi|297526157|ref|YP_003668181.1| - 0.041 13.9 4.9 0.073 13.1 4.9 1.4 1 1 0 1 1 1 0 Rnf-Nqr subunit, membrane protein PhaG_MnhG_YufB PF03334.14 gi|297526158|ref|YP_003668182.1| - 3e-17 62.6 7.5 3.8e-17 62.3 7.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4282 PF14110.6 gi|297526158|ref|YP_003668182.1| - 6.3 7.6 9.7 4.7e+02 1.6 9.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) MrpF_PhaF PF04066.13 gi|297526159|ref|YP_003668183.1| - 2.7e-09 37.3 4.0 2.7e-09 37.3 4.0 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Fer4 PF00037.27 gi|297526160|ref|YP_003668184.1| - 1e-17 63.1 12.1 7.8e-10 38.2 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297526160|ref|YP_003668184.1| - 1.2e-13 51.0 17.8 7.7e-10 38.7 9.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|297526160|ref|YP_003668184.1| - 1.6e-12 47.8 9.0 2.7e-12 47.1 9.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297526160|ref|YP_003668184.1| - 3e-11 44.1 5.1 2.5e-05 25.1 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|297526160|ref|YP_003668184.1| - 5.7e-11 42.4 18.4 1.4e-07 31.6 9.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|297526160|ref|YP_003668184.1| - 7.1e-11 42.1 7.3 1.1e-10 41.5 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297526160|ref|YP_003668184.1| - 1.1e-10 41.1 14.4 1.2e-05 25.2 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|297526160|ref|YP_003668184.1| - 3.3e-10 39.4 11.9 2.4e-05 24.1 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|297526160|ref|YP_003668184.1| - 5.9e-09 36.3 3.1 0.00093 19.7 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|297526160|ref|YP_003668184.1| - 1.5e-08 35.0 29.8 3.6e-05 24.1 11.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|297526160|ref|YP_003668184.1| - 9.4e-08 32.0 9.7 0.00029 21.1 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|297526160|ref|YP_003668184.1| - 3.1e-06 27.7 19.0 0.0014 19.4 5.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|297526160|ref|YP_003668184.1| - 0.00071 20.3 9.8 0.014 16.2 0.1 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|297526160|ref|YP_003668184.1| - 0.001 19.2 1.2 0.53 10.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|297526160|ref|YP_003668184.1| - 0.0014 19.2 12.4 0.067 13.7 1.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|297526160|ref|YP_003668184.1| - 0.14 12.3 0.4 0.14 12.3 0.4 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|297526160|ref|YP_003668184.1| - 0.17 12.7 10.9 1.9 9.4 1.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Complex1_49kDa PF00346.19 gi|297526161|ref|YP_003668185.1| - 9.5e-61 205.3 0.0 3.7e-49 167.2 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|297526161|ref|YP_003668185.1| - 0.0003 19.8 0.2 0.00079 18.4 0.0 1.8 3 0 0 3 3 3 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|297526162|ref|YP_003668186.1| - 4.9e-28 98.2 0.0 6.9e-28 97.7 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|297526163|ref|YP_003668187.1| - 2.1e-16 59.9 0.0 2.8e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Proton_antipo_M PF00361.20 gi|297526164|ref|YP_003668188.1| - 2.1e-49 168.3 19.8 2.1e-49 168.3 19.8 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Nop10p PF04135.12 gi|297526165|ref|YP_003668189.1| - 3.4e-22 78.2 1.1 3.8e-22 78.1 1.1 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.11 gi|297526165|ref|YP_003668189.1| - 0.008 16.2 1.8 0.01 15.9 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.7 gi|297526165|ref|YP_003668189.1| - 0.046 13.7 0.4 0.06 13.4 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 gi|297526165|ref|YP_003668189.1| - 0.051 13.8 2.4 0.051 13.8 2.4 1.4 1 1 0 1 1 1 0 Ribosomal L32p protein family DUF1258 PF06869.12 gi|297526165|ref|YP_003668189.1| - 0.095 12.2 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) RecR PF02132.15 gi|297526165|ref|YP_003668189.1| - 0.14 11.8 1.4 0.18 11.4 1.4 1.2 1 0 0 1 1 1 0 RecR protein Fer4 PF00037.27 gi|297526165|ref|YP_003668189.1| - 0.16 11.9 3.9 5.5 7.0 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain zf-ribbon_3 PF13248.6 gi|297526165|ref|YP_003668189.1| - 0.24 10.9 3.1 0.26 10.8 0.3 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|297526165|ref|YP_003668189.1| - 2.1 8.2 6.8 37 4.2 6.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|297526165|ref|YP_003668189.1| - 4.2 6.9 6.3 4.8 6.7 3.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com EIF_2_alpha PF07541.12 gi|297526166|ref|YP_003668190.1| - 9.2e-23 80.5 0.0 3.1e-22 78.9 0.0 1.8 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|297526166|ref|YP_003668190.1| - 5.8e-13 49.0 0.4 2.3e-12 47.1 0.1 2.0 2 0 0 2 2 2 1 S1 RNA binding domain GYD PF08734.11 gi|297526166|ref|YP_003668190.1| - 0.013 15.4 0.0 0.034 14.1 0.0 1.6 1 0 0 1 1 1 0 GYD domain S1_2 PF13509.6 gi|297526166|ref|YP_003668190.1| - 0.039 14.0 0.0 0.59 10.2 0.0 2.4 2 0 0 2 2 2 0 S1 domain Lipocalin_5 PF13924.6 gi|297526166|ref|YP_003668190.1| - 0.15 11.9 0.1 4.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Lipocalin-like domain Microcin PF03526.13 gi|297526167|ref|YP_003668191.1| - 0.027 14.3 2.1 0.05 13.4 0.3 2.5 2 0 0 2 2 2 0 Colicin E1 (microcin) immunity protein DUF2207 PF09972.9 gi|297526168|ref|YP_003668192.1| - 4.9 5.8 5.5 5.4 5.7 5.2 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DNA_primase_S PF01896.19 gi|297526170|ref|YP_003668194.1| - 4.8e-15 56.0 0.4 2.1e-13 50.7 0.1 2.5 2 0 0 2 2 2 2 DNA primase small subunit PCNA_N PF00705.18 gi|297526171|ref|YP_003668195.1| - 7.1e-14 51.6 0.0 1.3e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|297526171|ref|YP_003668195.1| - 2e-08 34.5 0.0 3.4e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|297526171|ref|YP_003668195.1| - 0.00031 19.9 0.0 0.00087 18.4 0.1 1.6 2 0 0 2 2 2 1 Repair protein Rad1/Rec1/Rad17 TFIIS_C PF01096.18 gi|297526173|ref|YP_003668197.1| - 2.6e-20 72.0 8.9 2.7e-19 68.7 3.5 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|297526173|ref|YP_003668197.1| - 1e-05 25.4 4.2 0.00036 20.4 2.5 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|297526173|ref|YP_003668197.1| - 0.00017 21.1 7.5 0.21 11.3 0.1 3.3 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|297526173|ref|YP_003668197.1| - 0.00026 20.8 3.9 1.2 9.1 0.0 3.3 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|297526173|ref|YP_003668197.1| - 0.00055 19.9 0.7 0.016 15.2 0.7 2.3 1 1 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|297526173|ref|YP_003668197.1| - 0.00065 19.2 7.9 0.34 10.5 0.1 3.4 3 1 1 4 4 4 2 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|297526173|ref|YP_003668197.1| - 0.0037 17.1 7.1 0.91 9.5 0.2 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 gi|297526173|ref|YP_003668197.1| - 0.0048 17.0 8.5 0.33 11.2 0.2 3.2 3 0 0 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.10 gi|297526173|ref|YP_003668197.1| - 0.0062 16.6 5.4 4.4 7.5 0.0 3.3 3 0 0 3 3 3 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|297526173|ref|YP_003668197.1| - 0.0083 16.0 7.2 0.12 12.3 2.3 2.8 1 1 1 2 2 2 1 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|297526173|ref|YP_003668197.1| - 0.011 15.8 9.7 0.18 11.9 0.3 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-CSL PF05207.13 gi|297526173|ref|YP_003668197.1| - 0.028 14.2 0.0 0.028 14.2 0.0 3.0 2 1 1 3 3 2 0 CSL zinc finger zf_UBZ PF18439.1 gi|297526173|ref|YP_003668197.1| - 0.032 13.8 7.5 1.9 8.2 0.0 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 gi|297526173|ref|YP_003668197.1| - 0.064 14.0 4.6 2.3 9.0 4.6 2.5 1 1 0 1 1 1 0 zinc-ribbon family Terminase_GpA PF05876.12 gi|297526173|ref|YP_003668197.1| - 0.068 11.7 3.3 0.46 9.0 1.7 2.0 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) HypA PF01155.19 gi|297526173|ref|YP_003668197.1| - 0.068 13.2 3.0 1.5 8.9 3.2 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|297526173|ref|YP_003668197.1| - 0.073 13.2 5.6 14 5.9 0.5 3.2 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.6 gi|297526173|ref|YP_003668197.1| - 0.16 11.9 6.7 15 5.6 0.1 3.8 4 0 0 4 4 4 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|297526173|ref|YP_003668197.1| - 0.17 11.4 9.0 1.7 8.1 0.3 3.3 3 0 0 3 3 3 0 zinc-ribbon domain YhfH PF14149.6 gi|297526173|ref|YP_003668197.1| - 0.22 11.5 2.8 16 5.5 0.1 3.2 3 0 0 3 3 3 0 YhfH-like protein RPA_interact_C PF14768.6 gi|297526173|ref|YP_003668197.1| - 0.32 11.6 3.1 1.9 9.1 0.8 2.6 1 1 1 2 2 2 0 Replication protein A interacting C-terminal Baculo_LEF5_C PF11792.8 gi|297526173|ref|YP_003668197.1| - 0.34 10.6 0.3 0.34 10.6 0.3 2.5 2 1 1 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain Mu-like_Com PF10122.9 gi|297526173|ref|YP_003668197.1| - 0.35 10.4 4.4 6.7 6.2 0.2 3.1 3 0 0 3 3 3 0 Mu-like prophage protein Com DUF2387 PF09526.10 gi|297526173|ref|YP_003668197.1| - 0.36 11.0 5.3 8.3 6.6 1.7 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) eIF-5_eIF-2B PF01873.17 gi|297526173|ref|YP_003668197.1| - 0.44 10.4 3.5 3.7 7.5 0.1 2.7 1 1 2 3 3 3 0 Domain found in IF2B/IF5 zn-ribbon_14 PF16503.5 gi|297526173|ref|YP_003668197.1| - 0.47 10.0 14.3 2.4 7.7 0.9 3.2 3 0 0 3 3 3 0 Zinc-ribbon FdhE PF04216.12 gi|297526173|ref|YP_003668197.1| - 0.51 10.2 2.7 0.31 10.9 0.5 1.7 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation DNA_RNApol_7kD PF03604.13 gi|297526173|ref|YP_003668197.1| - 0.59 9.9 9.3 9 6.1 0.1 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_ribbon_SprT PF17283.2 gi|297526173|ref|YP_003668197.1| - 0.65 10.0 12.2 2.6 8.0 5.7 2.6 2 1 0 2 2 2 0 SprT-like zinc ribbon domain DUF2688 PF10892.8 gi|297526173|ref|YP_003668197.1| - 0.73 9.4 6.3 10 5.7 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2688) Sgf11 PF08209.11 gi|297526173|ref|YP_003668197.1| - 0.76 9.4 5.0 15 5.3 0.1 3.0 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) CpXC PF14353.6 gi|297526173|ref|YP_003668197.1| - 0.9 9.6 7.1 5.6 7.0 0.3 2.9 1 1 1 3 3 3 0 CpXC protein Rubredoxin PF00301.20 gi|297526173|ref|YP_003668197.1| - 1.4 9.1 8.9 11 6.2 1.7 3.2 3 0 0 3 3 3 0 Rubredoxin Rubredoxin_2 PF18073.1 gi|297526173|ref|YP_003668197.1| - 1.6 8.5 12.2 5.8 6.7 1.9 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain Ogr_Delta PF04606.12 gi|297526173|ref|YP_003668197.1| - 3 7.9 8.7 5 7.2 0.0 2.7 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger A2L_zn_ribbon PF08792.10 gi|297526173|ref|YP_003668197.1| - 3.6 7.4 5.7 21 5.0 0.2 3.0 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-HIT PF04438.16 gi|297526173|ref|YP_003668197.1| - 8.2 6.4 12.8 7.7 6.5 0.5 3.0 3 0 0 3 3 3 0 HIT zinc finger RNA_pol_L_2 PF13656.6 gi|297526174|ref|YP_003668198.1| - 1.9e-19 69.2 0.1 2.4e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.9 gi|297526175|ref|YP_003668199.1| - 9e-43 146.0 2.5 1e-42 145.9 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Phage_ABA_S PF18066.1 gi|297526175|ref|YP_003668199.1| - 0.0085 16.8 1.2 1 10.1 0.1 2.5 1 1 1 2 2 2 2 Phage ABA sandwich domain ECR1_N PF14382.6 gi|297526176|ref|YP_003668200.1| - 1.6e-09 37.4 0.1 4e-09 36.1 0.1 1.7 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.23 gi|297526176|ref|YP_003668200.1| - 5.7e-06 26.6 0.2 9.6e-05 22.7 0.2 2.3 1 1 0 1 1 1 1 S1 RNA binding domain EXOSC1 PF10447.9 gi|297526176|ref|YP_003668200.1| - 5.8e-06 26.9 0.3 0.0083 16.7 0.0 2.5 1 1 1 2 2 2 2 Exosome component EXOSC1/CSL4 Prok-RING_1 PF14446.6 gi|297526176|ref|YP_003668200.1| - 7.4e-05 22.6 1.3 0.00013 21.8 1.3 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|297526176|ref|YP_003668200.1| - 0.00018 21.1 0.8 0.0003 20.4 0.8 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|297526176|ref|YP_003668200.1| - 0.00022 21.2 0.5 0.00035 20.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|297526176|ref|YP_003668200.1| - 0.00084 19.0 2.5 0.0016 18.1 2.5 1.5 1 1 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|297526176|ref|YP_003668200.1| - 0.0026 17.7 0.4 0.0042 17.0 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|297526176|ref|YP_003668200.1| - 0.0048 17.0 1.2 0.0072 16.5 1.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_POL_M_15KD PF02150.16 gi|297526176|ref|YP_003668200.1| - 0.0053 16.6 1.4 0.0097 15.8 1.4 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|297526176|ref|YP_003668200.1| - 0.006 16.6 0.2 0.012 15.7 0.2 1.6 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|297526176|ref|YP_003668200.1| - 0.027 14.4 4.1 0.23 11.4 4.1 2.1 1 1 0 1 1 1 0 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|297526176|ref|YP_003668200.1| - 0.028 14.2 1.3 0.088 12.6 1.3 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|297526176|ref|YP_003668200.1| - 0.058 12.8 4.5 1.1 8.8 4.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|297526176|ref|YP_003668200.1| - 0.075 13.2 3.0 0.67 10.1 3.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|297526176|ref|YP_003668200.1| - 0.18 12.0 2.2 0.57 10.4 2.2 1.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like 2-oxogl_dehyd_N PF16078.5 gi|297526176|ref|YP_003668200.1| - 0.18 11.4 0.2 0.34 10.5 0.2 1.4 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus ADK_lid PF05191.14 gi|297526176|ref|YP_003668200.1| - 0.2 11.7 1.0 3.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.12 gi|297526176|ref|YP_003668200.1| - 0.2 11.2 4.2 0.63 9.6 4.2 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C3HC4 PF00097.25 gi|297526176|ref|YP_003668200.1| - 0.29 11.0 1.5 0.48 10.3 1.5 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RRN7 PF11781.8 gi|297526176|ref|YP_003668200.1| - 0.35 10.6 1.6 1.2 8.9 0.2 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 MTS PF05175.14 gi|297526177|ref|YP_003668201.1| - 4.8e-07 29.5 0.0 6.9e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|297526177|ref|YP_003668201.1| - 4e-05 23.4 0.0 5.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|297526177|ref|YP_003668201.1| - 8.2e-05 21.7 0.0 0.00011 21.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|297526177|ref|YP_003668201.1| - 0.00012 21.6 0.2 0.00014 21.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|297526177|ref|YP_003668201.1| - 0.00064 19.4 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DUF43 PF01861.16 gi|297526177|ref|YP_003668201.1| - 0.0016 17.7 0.0 0.0041 16.4 0.0 1.7 1 1 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain UPF0020 PF01170.18 gi|297526177|ref|YP_003668201.1| - 0.0025 17.5 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|297526177|ref|YP_003668201.1| - 0.0035 18.0 0.0 0.0054 17.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|297526177|ref|YP_003668201.1| - 0.0083 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|297526177|ref|YP_003668201.1| - 0.012 16.4 0.0 0.018 15.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain SDH_sah PF01972.16 gi|297526178|ref|YP_003668202.1| - 8.5e-126 418.7 1.6 9.2e-126 418.6 1.6 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|297526178|ref|YP_003668202.1| - 2.8e-06 27.3 0.1 1.6e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.18 gi|297526178|ref|YP_003668202.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 Dak1_2 PF13684.6 gi|297526178|ref|YP_003668202.1| - 0.06 12.4 0.6 2.5 7.1 0.1 2.1 2 0 0 2 2 2 0 Dihydroxyacetone kinase family Diphthamide_syn PF01866.17 gi|297526179|ref|YP_003668203.1| - 1.2e-69 235.1 0.1 1.5e-69 234.8 0.1 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MCC-bdg_PDZ PF10506.9 gi|297526179|ref|YP_003668203.1| - 0.069 13.2 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF2007 PF09413.10 gi|297526179|ref|YP_003668203.1| - 0.15 12.2 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein Ribosomal_L16 PF00252.18 gi|297526180|ref|YP_003668204.1| - 7.3e-41 139.3 0.1 8.3e-41 139.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e UPF0020 PF01170.18 gi|297526181|ref|YP_003668205.1| - 2.3e-47 161.2 0.0 7.3e-47 159.6 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|297526181|ref|YP_003668205.1| - 7.2e-15 55.3 0.2 1.5e-14 54.3 0.2 1.5 1 1 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|297526181|ref|YP_003668205.1| - 5e-10 39.2 0.0 7.9e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|297526181|ref|YP_003668205.1| - 3.2e-06 27.0 0.0 1e-05 25.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.16 gi|297526181|ref|YP_003668205.1| - 8.2e-06 25.3 0.0 1.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_25 PF13649.6 gi|297526181|ref|YP_003668205.1| - 2.8e-05 24.7 0.0 0.00017 22.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297526181|ref|YP_003668205.1| - 0.002 18.7 0.0 0.007 17.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|297526181|ref|YP_003668205.1| - 0.0035 17.1 0.0 0.0076 16.0 0.0 1.5 1 0 0 1 1 1 1 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|297526181|ref|YP_003668205.1| - 0.0079 15.9 0.1 0.18 11.5 0.0 2.3 2 1 0 2 2 2 1 DNA methylase Methyltransf_15 PF09445.10 gi|297526181|ref|YP_003668205.1| - 0.037 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AviRa PF11599.8 gi|297526181|ref|YP_003668205.1| - 0.098 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Ubie_methyltran PF01209.18 gi|297526181|ref|YP_003668205.1| - 0.13 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Cas_DxTHG PF09455.10 gi|297526182|ref|YP_003668206.1| - 1e-27 97.7 2.2 1.3e-27 97.4 2.2 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Cas_APE2256 PF09651.10 gi|297526184|ref|YP_003668208.1| - 1.1e-27 96.6 0.0 1.5e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF402 PF04167.13 gi|297526185|ref|YP_003668209.1| - 2.7e-14 53.1 0.8 5.1e-14 52.2 0.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|297526185|ref|YP_003668209.1| - 1.2e-08 34.7 0.1 2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease E/G family BAR_3 PF16746.5 gi|297526185|ref|YP_003668209.1| - 0.025 14.3 0.3 0.037 13.7 0.3 1.2 1 0 0 1 1 1 0 BAR domain of APPL family UPF0147 PF03685.13 gi|297526186|ref|YP_003668210.1| - 7e-36 122.1 2.6 7.9e-36 122.0 2.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|297526186|ref|YP_003668210.1| - 0.034 14.4 0.2 5.6 7.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|297526187|ref|YP_003668211.1| - 8.9e-14 51.4 0.6 1.2e-13 50.9 0.6 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) KAP_NTPase PF07693.14 gi|297526187|ref|YP_003668211.1| - 0.0049 16.1 0.1 0.0049 16.1 0.1 1.1 1 0 0 1 1 1 1 KAP family P-loop domain Rieske PF00355.26 gi|297526187|ref|YP_003668211.1| - 0.028 14.4 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain Thymidylate_kin PF02223.17 gi|297526188|ref|YP_003668212.1| - 1.8e-40 138.6 0.0 2.1e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|297526188|ref|YP_003668212.1| - 4.4e-06 27.0 0.0 5.3e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 gi|297526188|ref|YP_003668212.1| - 1.5e-05 24.9 0.5 0.00014 21.8 0.5 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|297526188|ref|YP_003668212.1| - 0.00022 21.8 0.0 0.00074 20.1 0.0 1.8 1 1 1 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|297526188|ref|YP_003668212.1| - 0.032 14.1 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase HisKA PF00512.25 gi|297526188|ref|YP_003668212.1| - 0.067 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain AAA_17 PF13207.6 gi|297526188|ref|YP_003668212.1| - 0.14 12.6 0.0 0.66 10.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|297526188|ref|YP_003668212.1| - 0.16 11.7 0.1 0.37 10.5 0.0 1.6 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|297526188|ref|YP_003668212.1| - 0.18 12.1 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain OrfB_Zn_ribbon PF07282.11 gi|297526189|ref|YP_003668213.1| - 2.5e-23 81.8 0.0 5.2e-23 80.7 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|297526189|ref|YP_003668213.1| - 0.0003 21.0 0.6 0.00081 19.6 0.1 1.9 2 0 0 2 2 2 1 Probable transposase DZR PF12773.7 gi|297526189|ref|YP_003668213.1| - 0.0075 16.3 0.4 0.017 15.2 0.4 1.6 1 0 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|297526189|ref|YP_003668213.1| - 0.044 13.7 1.0 0.11 12.4 1.0 1.7 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit C1_1 PF00130.22 gi|297526189|ref|YP_003668213.1| - 9.1 6.3 7.7 0.53 10.2 0.1 2.5 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF126 PF01989.16 gi|297526190|ref|YP_003668214.1| - 1e-23 82.9 0.1 1.5e-23 82.4 0.1 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain TGBp3 PF02495.17 gi|297526190|ref|YP_003668214.1| - 0.02 14.5 0.4 0.12 12.1 0.1 2.1 2 0 0 2 2 2 0 Triple gene block 3 DUF521 PF04412.13 gi|297526191|ref|YP_003668215.1| - 3.5e-115 384.9 0.0 3.9e-115 384.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|297526192|ref|YP_003668216.1| - 3.2e-76 256.8 0.0 4e-76 256.5 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLP1_P PF16575.5 gi|297526193|ref|YP_003668217.1| - 1.8e-35 122.4 0.0 2.8e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|297526193|ref|YP_003668217.1| - 0.0042 16.8 0.0 0.013 15.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain CLP1_N PF16573.5 gi|297526193|ref|YP_003668217.1| - 0.014 15.6 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 N-terminal beta-sandwich domain of polyadenylation factor Chlam_OMP PF01308.17 gi|297526193|ref|YP_003668217.1| - 0.1 11.3 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Chlamydia major outer membrane protein Pyr_redox_2 PF07992.14 gi|297526194|ref|YP_003668218.1| - 0.0026 17.1 0.0 0.0044 16.3 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|297526194|ref|YP_003668218.1| - 0.0084 16.7 0.5 0.021 15.4 0.0 2.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase RuvX PF03652.15 gi|297526194|ref|YP_003668218.1| - 0.15 12.4 0.1 0.42 11.0 0.0 1.7 2 0 0 2 2 2 0 Holliday junction resolvase ATPase PF06745.13 gi|297526195|ref|YP_003668219.1| - 4.1e-08 32.9 0.0 6.7e-06 25.6 0.0 2.4 1 1 1 2 2 2 1 KaiC AAA_24 PF13479.6 gi|297526195|ref|YP_003668219.1| - 2.5e-05 24.1 0.0 5.7e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 AAA domain Rad51 PF08423.11 gi|297526195|ref|YP_003668219.1| - 6.9e-05 22.2 0.0 0.00068 19.0 0.0 2.4 2 1 0 2 2 2 1 Rad51 AAA_16 PF13191.6 gi|297526195|ref|YP_003668219.1| - 0.00077 19.9 0.0 0.0012 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|297526195|ref|YP_003668219.1| - 0.0023 17.9 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|297526195|ref|YP_003668219.1| - 0.0039 16.8 0.0 0.0075 15.9 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|297526195|ref|YP_003668219.1| - 0.0069 16.4 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|297526195|ref|YP_003668219.1| - 0.011 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial dnaA protein T2SSE PF00437.20 gi|297526195|ref|YP_003668219.1| - 0.016 14.3 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|297526195|ref|YP_003668219.1| - 0.02 15.3 0.0 0.036 14.5 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 gi|297526195|ref|YP_003668219.1| - 0.021 14.2 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|297526195|ref|YP_003668219.1| - 0.022 14.0 0.0 0.26 10.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Terminase_6 PF03237.15 gi|297526195|ref|YP_003668219.1| - 0.036 13.7 0.0 0.098 12.3 0.0 1.6 1 1 1 2 2 2 0 Terminase-like family NACHT PF05729.12 gi|297526195|ref|YP_003668219.1| - 0.037 14.0 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|297526195|ref|YP_003668219.1| - 0.039 13.7 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|297526195|ref|YP_003668219.1| - 0.049 13.4 0.2 0.094 12.5 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|297526195|ref|YP_003668219.1| - 0.053 13.9 0.0 0.086 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|297526195|ref|YP_003668219.1| - 0.07 13.6 0.0 0.11 13.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Viral_helicase1 PF01443.18 gi|297526195|ref|YP_003668219.1| - 0.073 12.8 0.0 0.091 12.5 0.0 1.1 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_7 PF12775.7 gi|297526195|ref|YP_003668219.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region GvpD PF07088.11 gi|297526195|ref|YP_003668219.1| - 0.13 10.8 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_30 PF13604.6 gi|297526195|ref|YP_003668219.1| - 0.24 11.1 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain CarS-like PF01864.17 gi|297526196|ref|YP_003668220.1| - 1.6e-31 109.6 3.5 4.2e-31 108.3 3.5 1.6 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|297526196|ref|YP_003668220.1| - 3.1e-08 33.7 1.4 3.1e-08 33.7 1.4 1.8 1 1 1 2 2 2 1 Cytidylyltransferase family Ribosomal_L44 PF00935.19 gi|297526197|ref|YP_003668221.1| - 6.4e-26 90.6 12.0 9.7e-26 90.1 12.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 RNA_POL_M_15KD PF02150.16 gi|297526197|ref|YP_003668221.1| - 0.0064 16.3 0.3 0.12 12.3 0.1 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit zf-ACC PF17848.1 gi|297526197|ref|YP_003668221.1| - 0.074 13.1 1.5 4.2 7.5 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain PHD_4 PF16866.5 gi|297526197|ref|YP_003668221.1| - 0.092 12.9 0.1 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 PHD-finger zinc_ribbon_4 PF13717.6 gi|297526197|ref|YP_003668221.1| - 0.11 12.5 4.5 1.1 9.2 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|297526197|ref|YP_003668221.1| - 0.18 11.7 7.0 0.56 10.1 1.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L33 PF00471.20 gi|297526197|ref|YP_003668221.1| - 0.21 12.0 0.9 0.21 12.0 0.9 3.2 2 1 1 3 3 3 0 Ribosomal protein L33 CxC5 PF18718.1 gi|297526197|ref|YP_003668221.1| - 1.5 8.9 5.5 6.7 6.8 1.4 2.1 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Mu-like_Com PF10122.9 gi|297526197|ref|YP_003668221.1| - 2.7 7.5 7.0 3.2 7.3 0.2 2.4 2 1 0 2 2 2 0 Mu-like prophage protein Com Ribosomal_S27e PF01667.17 gi|297526198|ref|YP_003668222.1| - 7.8e-19 67.1 1.1 8.8e-19 67.0 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|297526198|ref|YP_003668222.1| - 2.2e-05 23.9 2.0 3.8e-05 23.1 2.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|297526198|ref|YP_003668222.1| - 0.015 15.3 0.1 0.017 15.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|297526198|ref|YP_003668222.1| - 0.026 14.7 0.4 0.89 9.8 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Sec23_Sec24 PF04810.15 gi|297526198|ref|YP_003668222.1| - 0.027 14.5 1.7 1.4 9.0 0.3 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DZR PF12773.7 gi|297526198|ref|YP_003668222.1| - 0.028 14.4 0.2 0.038 14.0 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_3 PF13878.6 gi|297526198|ref|YP_003668222.1| - 0.04 13.8 0.3 8.1 6.4 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-RING_9 PF13901.6 gi|297526198|ref|YP_003668222.1| - 0.049 13.6 0.5 0.061 13.3 0.5 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon A2L_zn_ribbon PF08792.10 gi|297526198|ref|YP_003668222.1| - 0.081 12.7 4.6 1.2 8.9 4.7 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|297526198|ref|YP_003668222.1| - 0.093 12.4 0.9 3.8 7.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_4 PF13717.6 gi|297526198|ref|YP_003668222.1| - 0.094 12.7 2.0 1.9 8.5 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|297526198|ref|YP_003668222.1| - 0.12 12.5 1.0 0.31 11.2 1.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|297526198|ref|YP_003668222.1| - 0.13 12.3 0.2 0.18 11.9 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon zinc_ribbon_2 PF13240.6 gi|297526198|ref|YP_003668222.1| - 0.13 12.0 2.6 0.47 10.2 2.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-BED PF02892.15 gi|297526198|ref|YP_003668222.1| - 0.13 12.3 0.3 16 5.6 0.1 2.2 2 0 0 2 2 2 0 BED zinc finger DNA_RNApol_7kD PF03604.13 gi|297526198|ref|YP_003668222.1| - 0.31 10.7 5.7 2.6 7.8 5.7 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-trcl PF13451.6 gi|297526198|ref|YP_003668222.1| - 2 8.4 4.8 71 3.4 4.8 2.1 1 1 0 1 1 1 0 Probable zinc-ribbon domain Integrase_Zn PF02022.19 gi|297526199|ref|YP_003668223.1| - 0.098 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Integrase Zinc binding domain ECF_trnsprt PF12822.7 gi|297526201|ref|YP_003668225.1| - 0.29 11.2 17.8 0.39 10.8 17.8 1.2 1 0 0 1 1 1 0 ECF transporter, substrate-specific component DUF3341 PF11821.8 gi|297526201|ref|YP_003668225.1| - 2 8.0 7.2 0.76 9.4 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) adh_short_C2 PF13561.6 gi|297526202|ref|YP_003668226.1| - 4.1e-49 167.3 0.0 6.1e-49 166.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|297526202|ref|YP_003668226.1| - 5.4e-39 133.7 0.0 6.5e-39 133.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|297526202|ref|YP_003668226.1| - 2.8e-05 24.1 0.0 4.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|297526202|ref|YP_003668226.1| - 0.00056 19.8 0.2 0.0015 18.5 0.0 1.7 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1776 PF08643.10 gi|297526202|ref|YP_003668226.1| - 0.0069 15.8 0.0 0.0087 15.5 0.0 1.3 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Shikimate_DH PF01488.20 gi|297526202|ref|YP_003668226.1| - 0.13 12.3 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PRA-PH PF01503.17 gi|297526203|ref|YP_003668227.1| - 0.2 12.1 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase SHIRT PF18655.1 gi|297526206|ref|YP_003668230.1| - 0.032 14.8 0.1 0.063 13.9 0.1 1.5 1 0 0 1 1 1 0 SHIRT domain CARDB PF07705.11 gi|297526206|ref|YP_003668230.1| - 0.077 13.3 3.6 7.5 6.9 0.0 3.1 2 1 1 3 3 3 0 CARDB Peptidase_S24 PF00717.23 gi|297526207|ref|YP_003668231.1| - 0.00024 21.0 0.3 0.00078 19.3 0.1 2.1 2 0 0 2 2 2 1 Peptidase S24-like MerC PF03203.14 gi|297526207|ref|YP_003668231.1| - 0.055 13.9 0.6 0.055 13.9 0.6 1.9 2 0 0 2 2 2 0 MerC mercury resistance protein DUF2530 PF10745.9 gi|297526208|ref|YP_003668232.1| - 0.23 11.7 2.0 11 6.3 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) AGOG PF09171.10 gi|297526210|ref|YP_003668234.1| - 0.17 11.1 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 N-glycosylase/DNA lyase H2O2_YaaD PF03883.14 gi|297526211|ref|YP_003668235.1| - 0.0012 18.4 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Peroxide stress protein YaaA PDDEXK_7 PF04411.12 gi|297526213|ref|YP_003668237.1| - 0.0052 16.8 0.1 0.016 15.2 0.0 2.0 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Mrr_cat PF04471.12 gi|297526213|ref|YP_003668237.1| - 0.017 15.2 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease AAA_5 PF07728.14 gi|297526214|ref|YP_003668238.1| - 5.1e-17 62.2 0.0 1.4e-16 60.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|297526214|ref|YP_003668238.1| - 2.7e-08 34.3 0.0 1.3e-07 32.1 0.0 2.2 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|297526214|ref|YP_003668238.1| - 9.4e-05 22.6 0.1 0.00032 20.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|297526214|ref|YP_003668238.1| - 0.0001 22.6 0.4 0.0022 18.3 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|297526214|ref|YP_003668238.1| - 0.00011 22.7 0.0 0.00034 21.1 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|297526214|ref|YP_003668238.1| - 0.0005 19.8 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|297526214|ref|YP_003668238.1| - 0.0012 18.7 0.0 0.24 11.2 0.0 3.0 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|297526214|ref|YP_003668238.1| - 0.0016 18.6 6.1 0.68 10.0 0.4 3.2 3 0 0 3 3 3 2 Helicase HerA, central domain Rad17 PF03215.15 gi|297526214|ref|YP_003668238.1| - 0.0016 18.4 0.0 0.0052 16.7 0.0 1.9 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|297526214|ref|YP_003668238.1| - 0.0017 18.9 0.1 0.0074 16.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|297526214|ref|YP_003668238.1| - 0.0021 17.6 0.0 0.0082 15.7 0.0 2.1 3 0 0 3 3 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|297526214|ref|YP_003668238.1| - 0.0022 17.4 0.0 0.0056 16.1 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|297526214|ref|YP_003668238.1| - 0.0027 18.1 0.0 0.017 15.5 0.0 2.4 1 0 0 1 1 1 1 RNA helicase ABC_tran PF00005.27 gi|297526214|ref|YP_003668238.1| - 0.0053 17.3 1.1 0.018 15.5 0.0 2.4 3 1 0 3 3 2 1 ABC transporter IstB_IS21 PF01695.17 gi|297526214|ref|YP_003668238.1| - 0.006 16.3 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein PPV_E1_C PF00519.17 gi|297526214|ref|YP_003668238.1| - 0.0075 15.1 0.0 0.02 13.7 0.0 1.6 2 0 0 2 2 2 1 Papillomavirus helicase 6PF2K PF01591.18 gi|297526214|ref|YP_003668238.1| - 0.0081 15.5 0.3 0.032 13.5 0.0 2.1 2 0 0 2 2 2 1 6-phosphofructo-2-kinase PIF1 PF05970.14 gi|297526214|ref|YP_003668238.1| - 0.0088 15.2 0.0 0.02 14.1 0.0 1.5 1 0 0 1 1 1 1 PIF1-like helicase ATPase PF06745.13 gi|297526214|ref|YP_003668238.1| - 0.022 14.1 0.0 0.085 12.2 0.0 1.9 1 0 0 1 1 1 0 KaiC AAA_28 PF13521.6 gi|297526214|ref|YP_003668238.1| - 0.023 15.0 0.0 0.063 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|297526214|ref|YP_003668238.1| - 0.03 14.1 0.5 0.11 12.2 0.0 2.1 3 0 0 3 3 2 0 Cytidylate kinase AAA_8 PF12780.7 gi|297526214|ref|YP_003668238.1| - 0.031 13.6 0.0 0.089 12.1 0.0 1.8 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 AAA_25 PF13481.6 gi|297526214|ref|YP_003668238.1| - 0.04 13.5 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|297526214|ref|YP_003668238.1| - 0.058 13.8 0.3 0.19 12.1 0.0 2.0 2 0 0 2 2 1 0 AAA domain TIP49 PF06068.13 gi|297526214|ref|YP_003668238.1| - 0.059 12.6 0.0 0.32 10.2 0.0 2.0 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_14 PF13173.6 gi|297526214|ref|YP_003668238.1| - 0.081 13.0 1.4 1.2 9.2 0.1 3.3 2 1 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|297526214|ref|YP_003668238.1| - 0.083 12.6 1.1 0.42 10.3 0.1 2.4 3 0 0 3 3 2 0 AAA domain Sigma54_activat PF00158.26 gi|297526214|ref|YP_003668238.1| - 0.15 11.8 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|297526214|ref|YP_003668238.1| - 0.21 11.3 0.1 0.84 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|297526214|ref|YP_003668238.1| - 0.26 11.0 0.8 2.5 7.8 0.0 2.6 3 0 0 3 3 3 0 AAA domain DUF499 PF04465.12 gi|297526216|ref|YP_003668240.1| - 0 1231.8 48.4 0 1231.4 48.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF499) SGS PF05002.15 gi|297526216|ref|YP_003668240.1| - 0.12 12.5 0.0 0.35 11.0 0.0 1.7 1 0 0 1 1 1 0 SGS domain DUF1156 PF06634.12 gi|297526217|ref|YP_003668241.1| - 1.2e-09 38.2 0.0 2.8e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Cons_hypoth95 PF03602.15 gi|297526217|ref|YP_003668241.1| - 5.7e-07 29.3 0.0 0.0043 16.7 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|297526217|ref|YP_003668241.1| - 0.00076 19.2 0.0 0.68 9.6 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|297526217|ref|YP_003668241.1| - 0.044 13.5 0.0 0.044 13.5 0.0 3.2 4 0 0 4 4 4 0 DNA methylase AAA_11 PF13086.6 gi|297526218|ref|YP_003668242.1| - 2.7e-06 27.4 0.0 0.00086 19.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_12 PF13087.6 gi|297526218|ref|YP_003668242.1| - 0.0001 22.0 0.0 0.00072 19.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|297526218|ref|YP_003668242.1| - 0.0023 17.7 0.0 0.024 14.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|297526218|ref|YP_003668242.1| - 0.013 15.9 0.0 0.15 12.4 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|297526218|ref|YP_003668242.1| - 0.046 14.1 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain DEAD PF00270.29 gi|297526218|ref|YP_003668242.1| - 0.046 13.5 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase PDDEXK_1 PF12705.7 gi|297526219|ref|YP_003668243.1| - 3.4e-06 27.2 0.0 8.8e-06 25.8 0.0 1.7 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1418 PF07214.12 gi|297526220|ref|YP_003668244.1| - 0.069 13.0 0.2 0.069 13.0 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) Zn_Tnp_IS1595 PF12760.7 gi|297526222|ref|YP_003668246.1| - 0.0057 16.6 3.0 0.2 11.6 3.9 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain CpXC PF14353.6 gi|297526222|ref|YP_003668246.1| - 0.012 15.7 0.4 1.2 9.1 0.4 2.0 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|297526222|ref|YP_003668246.1| - 0.012 15.5 2.6 1.7 8.6 2.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|297526222|ref|YP_003668246.1| - 0.031 13.6 1.4 0.24 10.8 1.4 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-H2C2_2 PF13465.6 gi|297526222|ref|YP_003668246.1| - 0.031 14.7 4.1 1.8 9.1 0.7 2.3 2 0 0 2 2 2 0 Zinc-finger double domain PhnA_Zn_Ribbon PF08274.12 gi|297526222|ref|YP_003668246.1| - 0.039 13.9 0.7 1.7 8.7 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf_Rg PF17915.1 gi|297526222|ref|YP_003668246.1| - 0.056 12.9 0.2 8.3 5.9 0.0 2.1 2 0 0 2 2 2 0 Reverse gyrase zinc finger DnaJ_CXXCXGXG PF00684.19 gi|297526222|ref|YP_003668246.1| - 0.072 13.5 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 DnaJ central domain zf-C2H2_4 PF13894.6 gi|297526222|ref|YP_003668246.1| - 0.077 13.9 1.6 8.2 7.6 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.6 gi|297526222|ref|YP_003668246.1| - 0.11 11.9 5.5 0.17 11.3 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|297526222|ref|YP_003668246.1| - 0.16 12.0 0.1 0.2 11.7 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|297526222|ref|YP_003668246.1| - 0.17 12.0 5.7 0.18 11.9 0.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.6 gi|297526222|ref|YP_003668246.1| - 0.18 11.6 2.3 1 9.1 2.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain ADK_lid PF05191.14 gi|297526222|ref|YP_003668246.1| - 0.19 11.8 0.3 0.19 11.8 0.3 1.8 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.6 gi|297526222|ref|YP_003668246.1| - 0.65 9.8 7.7 0.57 10.0 1.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Anti-TRAP PF15777.5 gi|297526222|ref|YP_003668246.1| - 0.82 9.7 3.1 5.1 7.1 3.1 2.0 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF4065 PF13274.6 gi|297526223|ref|YP_003668247.1| - 2.5e-11 44.5 0.1 3.8e-11 43.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) RTP PF02334.16 gi|297526223|ref|YP_003668247.1| - 0.002 18.7 0.2 0.0035 18.0 0.1 1.6 1 1 0 1 1 1 1 Replication terminator protein GUN4_N PF16416.5 gi|297526224|ref|YP_003668248.1| - 0.037 14.0 0.0 0.046 13.7 0.0 1.1 1 0 0 1 1 1 0 ARM-like repeat domain, GUN4-N terminal Mad3_BUB1_I PF08311.12 gi|297526225|ref|YP_003668249.1| - 0.063 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 GST_C_2 PF13410.6 gi|297526225|ref|YP_003668249.1| - 0.15 12.1 0.0 0.36 10.9 0.0 1.6 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain N6_N4_Mtase PF01555.18 gi|297526226|ref|YP_003668250.1| - 1.2e-26 93.9 0.2 3.7e-16 59.5 0.0 2.2 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|297526226|ref|YP_003668250.1| - 2.8e-10 40.2 0.0 2.5e-09 37.1 0.0 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|297526226|ref|YP_003668250.1| - 0.00079 20.0 0.1 0.94 10.2 0.0 3.1 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297526226|ref|YP_003668250.1| - 0.0066 17.1 0.1 6.1 7.6 0.0 3.2 2 1 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.16 gi|297526226|ref|YP_003668250.1| - 0.087 12.1 0.0 0.32 10.2 0.0 1.8 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_15 PF09445.10 gi|297526226|ref|YP_003668250.1| - 0.12 11.9 0.0 0.31 10.6 0.0 1.8 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase fn3 PF00041.21 gi|297526227|ref|YP_003668251.1| - 2.4e-09 37.4 2.4 9.2e-09 35.5 2.4 2.1 1 0 0 1 1 1 1 Fibronectin type III domain DUF5122 PF17164.4 gi|297526227|ref|YP_003668251.1| - 1.4e-06 28.5 14.4 0.018 15.3 0.2 5.5 5 0 0 5 5 5 3 Domain of unknown function (DUF5122) beta-propeller Tissue_fac PF01108.17 gi|297526227|ref|YP_003668251.1| - 0.0031 17.3 0.7 0.0082 16.0 0.7 1.6 1 0 0 1 1 1 1 Tissue factor Yqai PF09466.10 gi|297526227|ref|YP_003668251.1| - 1.4 9.3 3.4 19 5.7 0.0 3.8 5 0 0 5 5 4 0 Hypothetical protein Yqai DUF5305 PF17231.2 gi|297526227|ref|YP_003668251.1| - 1.9 7.9 10.8 3.1 7.1 10.8 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) RIFIN PF02009.16 gi|297526227|ref|YP_003668251.1| - 3.2 7.6 3.7 4.5 7.1 3.7 1.2 1 0 0 1 1 1 0 Rifin NHL PF01436.21 gi|297526227|ref|YP_003668251.1| - 4.8 7.4 11.3 66 3.8 0.1 6.0 6 0 0 6 6 6 0 NHL repeat TMEM154 PF15102.6 gi|297526227|ref|YP_003668251.1| - 6 6.8 19.0 0.095 12.6 11.0 2.1 2 1 0 2 2 2 0 TMEM154 protein family Alpha_GJ PF03229.13 gi|297526227|ref|YP_003668251.1| - 6.4 7.3 13.4 20 5.8 13.4 1.8 1 0 0 1 1 1 0 Alphavirus glycoprotein J DUF5427 PF10310.9 gi|297526227|ref|YP_003668251.1| - 7.6 5.4 7.9 8 5.3 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5427) EVI2A PF05399.11 gi|297526227|ref|YP_003668251.1| - 8.8 5.8 14.5 0.36 10.4 8.0 1.9 2 0 0 2 2 2 0 Ectropic viral integration site 2A protein (EVI2A) ABC_ATPase PF09818.9 gi|297526228|ref|YP_003668252.1| - 3.3e-140 467.8 0.0 4.3e-140 467.5 0.0 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|297526228|ref|YP_003668252.1| - 0.0011 19.5 0.0 0.002 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|297526228|ref|YP_003668252.1| - 0.029 14.6 0.0 0.052 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|297526228|ref|YP_003668252.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad51 PF08423.11 gi|297526228|ref|YP_003668252.1| - 0.11 11.7 0.0 0.72 9.1 0.0 1.9 2 0 0 2 2 2 0 Rad51 DHO_dh PF01180.21 gi|297526229|ref|YP_003668253.1| - 3.5e-43 147.9 0.1 4.1e-43 147.7 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|297526229|ref|YP_003668253.1| - 0.018 14.4 0.1 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase IMPDH PF00478.25 gi|297526229|ref|YP_003668253.1| - 0.036 13.1 2.1 0.083 11.9 0.2 2.4 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain IreB PF06135.12 gi|297526229|ref|YP_003668253.1| - 0.055 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 IreB regulatory phosphoprotein Amidohydro_1 PF01979.20 gi|297526230|ref|YP_003668254.1| - 2.7e-17 63.1 0.0 4.3e-10 39.4 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|297526230|ref|YP_003668254.1| - 0.00034 20.2 0.0 0.72 9.2 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DHODB_Fe-S_bind PF10418.9 gi|297526231|ref|YP_003668255.1| - 1.7e-08 34.2 0.4 3.8e-08 33.0 0.4 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|297526231|ref|YP_003668255.1| - 0.0011 19.6 0.1 0.049 14.3 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|297526231|ref|YP_003668255.1| - 0.19 12.1 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain Fer2_3 PF13085.6 gi|297526231|ref|YP_003668255.1| - 0.2 11.7 0.1 0.36 10.8 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PyrI PF01948.18 gi|297526232|ref|YP_003668256.1| - 2.2e-34 117.6 4.9 3.8e-34 116.8 4.9 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|297526232|ref|YP_003668256.1| - 9.9e-16 57.4 0.7 9.9e-16 57.4 0.7 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|297526233|ref|YP_003668257.1| - 3.4e-42 144.0 0.0 5e-42 143.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|297526233|ref|YP_003668257.1| - 7.7e-20 71.5 0.0 1.2e-19 70.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MLD PF11647.8 gi|297526233|ref|YP_003668257.1| - 0.03 14.6 1.5 1 9.7 0.2 2.7 3 0 0 3 3 3 0 Membrane Localization Domain Pribosyltran PF00156.27 gi|297526234|ref|YP_003668258.1| - 2e-19 69.6 0.2 2.8e-19 69.2 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|297526234|ref|YP_003668258.1| - 0.00092 18.7 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Mur_ligase_C PF02875.21 gi|297526234|ref|YP_003668258.1| - 0.13 12.6 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain OMPdecase PF00215.24 gi|297526235|ref|YP_003668259.1| - 1.9e-21 76.7 0.0 2.2e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family CTP_synth_N PF06418.14 gi|297526236|ref|YP_003668260.1| - 5.8e-121 402.8 1.8 7.9e-121 402.4 1.8 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|297526236|ref|YP_003668260.1| - 6.3e-45 153.3 0.0 1e-44 152.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|297526236|ref|YP_003668260.1| - 7.1e-08 32.5 0.0 1.8e-07 31.1 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|297526236|ref|YP_003668260.1| - 0.04 14.0 0.0 0.075 13.1 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Pribosyltran PF00156.27 gi|297526237|ref|YP_003668261.1| - 6e-23 81.1 0.0 8e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|297526237|ref|YP_003668261.1| - 0.0009 18.7 0.0 0.0032 17.0 0.0 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase CBS PF00571.28 gi|297526239|ref|YP_003668263.1| - 3.3e-08 33.8 2.5 4.7e-06 26.9 0.1 3.2 3 0 0 3 3 3 1 CBS domain DUF1858 PF08984.11 gi|297526239|ref|YP_003668263.1| - 0.087 13.0 0.0 3.7 7.8 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF1858) OrfB_Zn_ribbon PF07282.11 gi|297526240|ref|YP_003668264.1| - 3.7e-18 65.2 0.1 1e-17 63.8 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Cys_rich_CPCC PF14206.6 gi|297526240|ref|YP_003668264.1| - 0.007 16.2 0.3 0.015 15.1 0.3 1.5 1 0 0 1 1 1 1 Cysteine-rich CPCC zf-ribbon_3 PF13248.6 gi|297526240|ref|YP_003668264.1| - 0.046 13.1 1.7 1 8.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|297526240|ref|YP_003668264.1| - 0.09 12.9 0.3 0.28 11.3 0.3 1.9 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.9 gi|297526240|ref|YP_003668264.1| - 0.28 11.3 2.0 2.6 8.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2716 PF10898.8 gi|297526240|ref|YP_003668264.1| - 0.31 11.4 2.5 1.9 8.8 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2716) zinc_ribbon_2 PF13240.6 gi|297526240|ref|YP_003668264.1| - 0.52 10.1 2.8 1.4 8.7 2.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain CBS PF00571.28 gi|297526241|ref|YP_003668265.1| - 1e-41 141.2 18.0 1.6e-10 41.3 0.8 5.2 5 0 0 5 5 5 5 CBS domain IF3_N PF05198.16 gi|297526241|ref|YP_003668265.1| - 0.00018 21.7 4.8 0.26 11.6 0.2 4.0 4 0 0 4 4 4 2 Translation initiation factor IF-3, N-terminal domain Acetyltransf_4 PF13420.7 gi|297526241|ref|YP_003668265.1| - 0.0043 17.2 0.0 0.11 12.7 0.0 2.6 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|297526241|ref|YP_003668265.1| - 0.0055 16.9 0.1 22 5.3 0.0 3.7 3 1 1 4 4 4 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|297526241|ref|YP_003668265.1| - 0.0069 16.3 0.0 10 6.1 0.0 3.3 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain DUF3659 PF12396.8 gi|297526241|ref|YP_003668265.1| - 0.02 14.8 3.4 8.5 6.4 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) PRC PF05239.16 gi|297526241|ref|YP_003668265.1| - 0.031 14.4 3.7 5.4 7.2 0.2 3.3 2 1 0 2 2 2 0 PRC-barrel domain Translin PF01997.16 gi|297526242|ref|YP_003668266.1| - 9.8e-07 28.9 0.0 1.7e-05 24.9 0.0 2.2 1 1 0 1 1 1 1 Translin family SRP_TPR_like PF17004.5 gi|297526242|ref|YP_003668266.1| - 0.0075 16.3 0.2 0.018 15.1 0.1 1.6 2 0 0 2 2 2 1 Putative TPR-like repeat Dehydratase_SU PF02287.15 gi|297526242|ref|YP_003668266.1| - 0.082 13.0 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Dehydratase small subunit TPR_2 PF07719.17 gi|297526242|ref|YP_003668266.1| - 0.14 12.4 0.1 35 4.8 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|297526242|ref|YP_003668266.1| - 0.88 9.5 3.1 63 3.6 0.0 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF4346 PF14251.6 gi|297526243|ref|YP_003668267.1| - 0.095 12.7 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) DUF1843 PF08898.10 gi|297526244|ref|YP_003668268.1| - 0.11 13.0 0.4 1.1 9.8 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1843) SpoVT_C PF15714.5 gi|297526245|ref|YP_003668269.1| - 0.03 14.4 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor BALF1 PF06861.11 gi|297526245|ref|YP_003668269.1| - 0.047 13.3 0.0 0.056 13.1 0.0 1.2 1 0 0 1 1 1 0 BALF1 protein PIN_9 PF18477.1 gi|297526245|ref|YP_003668269.1| - 0.051 13.9 0.3 0.076 13.3 0.3 1.2 1 0 0 1 1 1 0 PIN like domain HTH_31 PF13560.6 gi|297526246|ref|YP_003668270.1| - 5e-06 26.8 0.0 1.3e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|297526246|ref|YP_003668270.1| - 6.7e-06 26.1 0.0 1.4e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|297526246|ref|YP_003668270.1| - 0.002 18.1 0.1 0.0039 17.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|297526246|ref|YP_003668270.1| - 0.024 14.7 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Alpha-amylase PF00128.24 gi|297526247|ref|YP_003668271.1| - 1.7e-60 205.3 0.7 2.6e-60 204.8 0.7 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|297526247|ref|YP_003668271.1| - 0.0013 18.9 0.0 0.0034 17.6 0.0 1.7 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase CbiX PF01903.17 gi|297526247|ref|YP_003668271.1| - 0.15 12.4 0.0 1.9 8.9 0.0 2.3 2 0 0 2 2 2 0 CbiX DUF2848 PF11010.8 gi|297526247|ref|YP_003668271.1| - 0.26 10.9 0.0 0.38 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2848) Voltage_CLC PF00654.20 gi|297526248|ref|YP_003668272.1| - 5.8e-61 206.7 22.5 5.8e-61 206.7 22.5 1.7 1 1 1 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|297526248|ref|YP_003668272.1| - 1.2e-07 32.1 0.3 0.0038 17.6 0.1 2.7 1 1 1 2 2 2 2 CBS domain PTS_2-RNA PF01885.16 gi|297526249|ref|YP_003668273.1| - 4.5e-31 108.3 0.0 5.6e-31 108.0 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|297526249|ref|YP_003668273.1| - 0.018 14.6 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase catalytic domain Desulfoferrod_N PF06397.12 gi|297526249|ref|YP_003668273.1| - 0.026 14.2 0.8 0.048 13.3 0.8 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Scs3p PF10261.9 gi|297526250|ref|YP_003668274.1| - 1.3 8.4 6.7 4.4 6.7 6.7 1.8 1 1 0 1 1 1 0 Inositol phospholipid synthesis and fat-storage-inducing TM EamA PF00892.20 gi|297526251|ref|YP_003668275.1| - 1.4e-34 119.2 32.9 3.1e-22 79.2 12.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family S1FA PF04689.13 gi|297526251|ref|YP_003668275.1| - 0.096 12.8 1.7 2.6 8.2 0.0 3.0 2 1 0 2 2 2 0 DNA binding protein S1FA DUF5603 PF18231.1 gi|297526252|ref|YP_003668276.1| - 7.2e-53 177.4 6.6 2.1e-52 175.9 5.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|297526252|ref|YP_003668276.1| - 2e-15 56.8 0.0 4.3e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|297526252|ref|YP_003668276.1| - 2e-08 33.5 0.2 0.0002 20.4 0.0 2.8 2 1 1 3 3 3 2 Protein of unknown function (DUF1015) 2-Hacid_dh_C PF02826.19 gi|297526254|ref|YP_003668278.1| - 4.5e-71 237.9 0.0 8.1e-71 237.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|297526254|ref|YP_003668278.1| - 1.7e-38 131.3 0.1 1.9e-38 131.1 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|297526254|ref|YP_003668278.1| - 9.6e-05 22.6 0.2 0.00028 21.1 0.1 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Nitro_FeMo-Co PF02579.17 gi|297526254|ref|YP_003668278.1| - 0.0012 19.2 0.8 3.7 7.9 0.1 3.5 2 1 2 4 4 4 2 Dinitrogenase iron-molybdenum cofactor AlaDh_PNT_C PF01262.21 gi|297526254|ref|YP_003668278.1| - 0.0012 18.2 1.9 0.0021 17.4 0.5 2.0 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|297526254|ref|YP_003668278.1| - 0.003 17.8 1.3 0.74 10.1 0.0 2.5 2 0 0 2 2 2 2 TrkA-N domain NmrA PF05368.13 gi|297526254|ref|YP_003668278.1| - 0.012 15.2 0.1 0.028 14.0 0.1 1.6 1 0 0 1 1 1 0 NmrA-like family F420_oxidored PF03807.17 gi|297526254|ref|YP_003668278.1| - 0.014 15.9 1.0 0.29 11.7 0.1 2.5 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|297526254|ref|YP_003668278.1| - 0.052 13.1 0.3 0.16 11.5 0.0 2.0 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Gp_dh_N PF00044.24 gi|297526254|ref|YP_003668278.1| - 0.11 12.8 0.1 0.27 11.6 0.1 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aminotran_5 PF00266.19 gi|297526255|ref|YP_003668279.1| - 1.6e-38 132.7 0.0 2e-38 132.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|297526255|ref|YP_003668279.1| - 9.6e-05 21.7 0.0 0.00014 21.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.16 gi|297526255|ref|YP_003668279.1| - 0.0016 17.3 0.0 0.0022 16.9 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein ORF_2_N PF18492.1 gi|297526255|ref|YP_003668279.1| - 0.16 12.2 0.0 0.54 10.5 0.0 1.9 2 0 0 2 2 2 0 Open reading frame 2 N-terminal domain Ntox8 PF15545.6 gi|297526255|ref|YP_003668279.1| - 0.17 12.0 0.0 2.3 8.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial toxin 8 UDPG_MGDP_dh_C PF03720.15 gi|297526257|ref|YP_003668281.1| - 0.11 12.9 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DND1_DSRM PF14709.7 gi|297526258|ref|YP_003668282.1| - 0.045 14.0 0.0 0.055 13.7 0.0 1.1 1 0 0 1 1 1 0 double strand RNA binding domain from DEAD END PROTEIN 1 zf-Mss51 PF13824.6 gi|297526258|ref|YP_003668282.1| - 0.053 13.6 0.6 2.3 8.4 0.6 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 PRP21_like_P PF12230.8 gi|297526258|ref|YP_003668282.1| - 0.084 12.7 0.0 0.095 12.6 0.0 1.1 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein Peptidase_M24 PF00557.24 gi|297526259|ref|YP_003668283.1| - 1.9e-55 187.8 0.0 2.5e-55 187.4 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|297526259|ref|YP_003668283.1| - 2.6e-07 31.4 0.0 4.3e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain ATP-cone PF03477.16 gi|297526259|ref|YP_003668283.1| - 0.029 14.9 2.2 1 10.0 0.2 2.4 2 0 0 2 2 2 0 ATP cone domain Inositol_P PF00459.25 gi|297526260|ref|YP_003668284.1| - 1.4e-18 67.4 0.0 1.8e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|297526260|ref|YP_003668284.1| - 1.6e-06 27.8 0.0 2.2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Flavin_Reduct PF01613.18 gi|297526262|ref|YP_003668286.1| - 0.015 15.3 0.0 0.015 15.3 0.0 1.0 1 0 0 1 1 1 0 Flavin reductase like domain VWA PF00092.28 gi|297526263|ref|YP_003668287.1| - 1.2e-14 54.9 0.0 2.2e-14 54.1 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|297526263|ref|YP_003668287.1| - 3.6e-11 43.7 0.0 9.8e-11 42.3 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|297526263|ref|YP_003668287.1| - 3.6e-05 23.8 0.0 0.00014 21.8 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain PucR PF07905.11 gi|297526263|ref|YP_003668287.1| - 0.014 15.7 0.1 0.049 13.9 0.0 2.0 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family Helicase_C_3 PF13625.6 gi|297526263|ref|YP_003668287.1| - 0.069 13.3 0.1 0.77 9.9 0.0 2.4 3 0 0 3 3 3 0 Helicase conserved C-terminal domain Glyco_tran_WecB PF03808.13 gi|297526263|ref|YP_003668287.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Copine PF07002.16 gi|297526263|ref|YP_003668287.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 2 0 0 2 2 2 0 Copine FHA PF00498.26 gi|297526264|ref|YP_003668288.1| - 1.4e-19 70.2 0.1 1.9e-19 69.8 0.1 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|297526264|ref|YP_003668288.1| - 7.1e-16 58.3 0.0 9.3e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Pkinase PF00069.25 gi|297526265|ref|YP_003668289.1| - 4.5e-16 59.0 0.0 9.2e-16 58.0 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|297526265|ref|YP_003668289.1| - 1.7e-06 27.5 0.0 4.3e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase PhoU PF01895.19 gi|297526266|ref|YP_003668290.1| - 1.2e-24 86.6 14.5 1.5e-23 83.1 3.6 2.7 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|297526266|ref|YP_003668290.1| - 4.2e-11 42.5 0.2 1.5e-10 40.8 0.0 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Repressor_Mnt PF11423.8 gi|297526266|ref|YP_003668290.1| - 0.11 12.2 0.1 4.7 7.1 0.0 2.7 2 0 0 2 2 2 0 Regulatory protein Mnt TrkA_C PF02080.21 gi|297526268|ref|YP_003668292.1| - 1.8e-17 62.9 0.7 8.2e-08 32.0 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|297526268|ref|YP_003668292.1| - 2e-12 47.4 15.2 4.3e-06 27.1 2.6 2.6 2 0 0 2 2 2 2 PhoU domain eRF1_2 PF03464.15 gi|297526269|ref|YP_003668293.1| - 6.7e-44 149.4 0.0 1.1e-43 148.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|297526269|ref|YP_003668293.1| - 1.9e-21 76.7 0.1 5.1e-20 72.1 0.1 2.5 1 1 0 1 1 1 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|297526269|ref|YP_003668293.1| - 1.1e-14 54.8 0.0 3e-14 53.4 0.0 1.8 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|297526269|ref|YP_003668293.1| - 8e-11 42.4 0.0 1.5e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|297526269|ref|YP_003668293.1| - 0.003 17.6 0.0 0.0056 16.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Sua5_yciO_yrdC PF01300.18 gi|297526270|ref|YP_003668294.1| - 6.1e-40 136.6 0.0 7.1e-40 136.4 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination Orexin PF02072.15 gi|297526271|ref|YP_003668295.1| - 0.044 13.7 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 Prepro-orexin Tfb5 PF06331.12 gi|297526271|ref|YP_003668295.1| - 0.059 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Transcription factor TFIIH complex subunit Tfb5 Glyco_hydro_114 PF03537.13 gi|297526274|ref|YP_003668298.1| - 1.7e-30 106.1 0.1 2e-30 105.8 0.1 1.0 1 0 0 1 1 1 1 Glycoside-hydrolase family GH114 ATG16 PF08614.11 gi|297526275|ref|YP_003668299.1| - 5.3e-06 26.8 4.7 6.5e-06 26.5 4.7 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) HOOK PF05622.12 gi|297526275|ref|YP_003668299.1| - 0.00011 20.6 8.2 0.00016 20.0 8.2 1.2 1 0 0 1 1 1 1 HOOK protein GIT_CC PF16559.5 gi|297526275|ref|YP_003668299.1| - 0.00018 21.3 2.6 0.00018 21.3 2.6 1.8 2 0 0 2 2 1 1 GIT coiled-coil Rho guanine nucleotide exchange factor Baculo_PEP_C PF04513.12 gi|297526275|ref|YP_003668299.1| - 0.0002 21.4 0.1 0.00035 20.6 0.1 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus LRRFIP PF09738.9 gi|297526275|ref|YP_003668299.1| - 0.00035 20.1 3.0 0.0004 20.0 3.0 1.1 1 0 0 1 1 1 1 LRRFIP family BLOC1_2 PF10046.9 gi|297526275|ref|YP_003668299.1| - 0.00068 19.9 7.9 0.0014 18.9 7.9 1.6 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|297526275|ref|YP_003668299.1| - 0.00085 18.3 11.0 0.0012 17.8 11.0 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein HAUS-augmin3 PF14932.6 gi|297526275|ref|YP_003668299.1| - 0.00098 18.8 7.7 0.0011 18.6 6.2 1.8 2 0 0 2 2 2 1 HAUS augmin-like complex subunit 3 DUF812 PF05667.11 gi|297526275|ref|YP_003668299.1| - 0.001 18.0 6.0 0.0011 18.0 6.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) TolA_bind_tri PF16331.5 gi|297526275|ref|YP_003668299.1| - 0.0013 18.7 4.5 0.0031 17.6 4.5 1.7 1 0 0 1 1 1 1 TolA binding protein trimerisation YabA PF06156.13 gi|297526275|ref|YP_003668299.1| - 0.0016 19.0 9.0 0.0034 18.0 9.0 1.5 1 0 0 1 1 1 1 Initiation control protein YabA TSNAXIP1_N PF15739.5 gi|297526275|ref|YP_003668299.1| - 0.0018 18.7 8.3 0.0034 17.7 8.3 1.5 1 0 0 1 1 1 1 Translin-associated factor X-interacting N-terminus FPP PF05911.11 gi|297526275|ref|YP_003668299.1| - 0.0023 16.2 7.5 0.003 15.9 7.5 1.2 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil AAA_13 PF13166.6 gi|297526275|ref|YP_003668299.1| - 0.0039 15.9 4.4 0.004 15.9 4.4 1.1 1 0 0 1 1 1 1 AAA domain DUF1664 PF07889.12 gi|297526275|ref|YP_003668299.1| - 0.0046 17.0 3.8 0.0095 16.0 3.8 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF2968 PF11180.8 gi|297526275|ref|YP_003668299.1| - 0.0046 16.6 0.8 0.0063 16.2 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2968) Cep57_CLD_2 PF14197.6 gi|297526275|ref|YP_003668299.1| - 0.0047 17.0 13.8 0.0092 16.1 13.3 1.7 1 1 0 1 1 1 1 Centrosome localisation domain of PPC89 CENP-F_leu_zip PF10473.9 gi|297526275|ref|YP_003668299.1| - 0.0054 16.8 11.9 0.01 15.9 11.9 1.5 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_TATA_bd PF12325.8 gi|297526275|ref|YP_003668299.1| - 0.0058 16.8 8.0 0.012 15.8 8.0 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding Wtap PF17098.5 gi|297526275|ref|YP_003668299.1| - 0.0061 16.5 6.6 0.012 15.5 6.6 1.5 1 0 0 1 1 1 1 WTAP/Mum2p family UPF0242 PF06785.11 gi|297526275|ref|YP_003668299.1| - 0.0065 16.6 8.2 0.0091 16.1 8.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus eIF3_N PF09440.10 gi|297526275|ref|YP_003668299.1| - 0.0078 16.7 3.4 0.014 15.8 3.4 1.5 1 0 0 1 1 1 1 eIF3 subunit 6 N terminal domain KfrA_N PF11740.8 gi|297526275|ref|YP_003668299.1| - 0.0079 16.9 0.9 0.019 15.6 0.8 1.7 1 1 0 1 1 1 1 Plasmid replication region DNA-binding N-term DUF3450 PF11932.8 gi|297526275|ref|YP_003668299.1| - 0.0086 15.4 4.1 0.015 14.6 4.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) RTBV_P46 PF06216.11 gi|297526275|ref|YP_003668299.1| - 0.01 14.8 1.2 0.016 14.2 1.2 1.2 1 0 0 1 1 1 0 Rice tungro bacilliform virus P46 protein HIP1_clath_bdg PF16515.5 gi|297526275|ref|YP_003668299.1| - 0.012 16.2 5.1 0.028 15.0 5.1 1.6 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 HAUS6_N PF14661.6 gi|297526275|ref|YP_003668299.1| - 0.014 15.0 3.8 0.016 14.8 3.8 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Tektin PF03148.14 gi|297526275|ref|YP_003668299.1| - 0.015 14.1 7.7 0.022 13.5 7.7 1.2 1 0 0 1 1 1 0 Tektin family Snapin_Pallidin PF14712.6 gi|297526275|ref|YP_003668299.1| - 0.019 15.4 7.0 0.019 15.4 7.0 2.3 1 1 1 2 2 2 0 Snapin/Pallidin COG6 PF06419.11 gi|297526275|ref|YP_003668299.1| - 0.019 13.2 5.8 0.027 12.7 5.8 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 FapA PF03961.13 gi|297526275|ref|YP_003668299.1| - 0.027 13.1 7.9 0.034 12.8 7.9 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF4795 PF16043.5 gi|297526275|ref|YP_003668299.1| - 0.027 14.1 6.1 0.04 13.5 6.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) APG6_N PF17675.1 gi|297526275|ref|YP_003668299.1| - 0.028 15.0 8.8 0.046 14.2 8.8 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region ADIP PF11559.8 gi|297526275|ref|YP_003668299.1| - 0.028 14.5 8.3 0.055 13.6 8.0 1.6 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding HTH_7 PF02796.15 gi|297526275|ref|YP_003668299.1| - 0.032 14.3 0.0 0.1 12.7 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF4404 PF14357.6 gi|297526275|ref|YP_003668299.1| - 0.033 14.8 6.7 0.033 14.8 6.7 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF4404) FmiP_Thoc5 PF09766.9 gi|297526275|ref|YP_003668299.1| - 0.034 13.4 9.4 0.045 13.1 9.4 1.2 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 Prominin PF05478.11 gi|297526275|ref|YP_003668299.1| - 0.035 12.1 2.0 0.043 11.8 2.0 1.2 1 0 0 1 1 1 0 Prominin Bacillus_HBL PF05791.11 gi|297526275|ref|YP_003668299.1| - 0.038 13.8 3.4 0.067 13.0 3.4 1.5 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) HTH_23 PF13384.6 gi|297526275|ref|YP_003668299.1| - 0.044 13.6 0.1 0.13 12.0 0.1 1.8 1 0 0 1 1 1 0 Homeodomain-like domain LMBR1 PF04791.16 gi|297526275|ref|YP_003668299.1| - 0.045 12.6 2.7 0.059 12.3 2.7 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4407 PF14362.6 gi|297526275|ref|YP_003668299.1| - 0.05 13.0 2.8 0.078 12.3 2.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) AAA_23 PF13476.6 gi|297526275|ref|YP_003668299.1| - 0.05 14.1 10.3 0.074 13.5 10.3 1.3 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|297526275|ref|YP_003668299.1| - 0.052 13.9 6.5 0.052 13.9 6.5 3.0 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) DUF16 PF01519.16 gi|297526275|ref|YP_003668299.1| - 0.053 14.0 11.4 0.2 12.1 11.3 2.0 1 1 1 2 2 1 0 Protein of unknown function DUF16 DUF1241 PF06840.11 gi|297526275|ref|YP_003668299.1| - 0.054 13.1 7.5 0.081 12.6 6.4 1.9 2 1 0 2 2 1 0 Protein of unknown function (DUF1241) Troponin PF00992.20 gi|297526275|ref|YP_003668299.1| - 0.054 13.8 13.1 0.087 13.1 13.1 1.4 1 0 0 1 1 1 0 Troponin BRE1 PF08647.11 gi|297526275|ref|YP_003668299.1| - 0.057 13.5 13.0 0.1 12.7 13.0 1.4 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase ERM PF00769.19 gi|297526275|ref|YP_003668299.1| - 0.057 13.2 10.9 0.093 12.5 10.9 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family CCDC92 PF14916.6 gi|297526275|ref|YP_003668299.1| - 0.062 13.1 4.9 0.12 12.2 4.9 1.5 1 0 0 1 1 1 0 Coiled-coil domain of unknown function CENP-H PF05837.12 gi|297526275|ref|YP_003668299.1| - 0.068 13.6 8.0 0.14 12.5 8.0 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Fib_alpha PF08702.10 gi|297526275|ref|YP_003668299.1| - 0.069 13.3 5.5 0.16 12.1 5.5 1.7 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family TMPIT PF07851.13 gi|297526275|ref|YP_003668299.1| - 0.07 12.4 5.8 0.098 11.9 5.8 1.2 1 0 0 1 1 1 0 TMPIT-like protein Jnk-SapK_ap_N PF09744.9 gi|297526275|ref|YP_003668299.1| - 0.07 13.3 11.6 0.12 12.6 11.4 1.5 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 ZnuA PF01297.17 gi|297526275|ref|YP_003668299.1| - 0.075 12.4 2.2 0.16 11.4 2.2 1.5 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic NPV_P10 PF05531.12 gi|297526275|ref|YP_003668299.1| - 0.08 13.4 3.2 0.85 10.1 2.7 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.13 gi|297526275|ref|YP_003668299.1| - 0.08 13.7 10.0 0.058 14.1 8.2 1.7 2 0 0 2 2 1 0 Occludin homology domain HTH_38 PF13936.6 gi|297526275|ref|YP_003668299.1| - 0.08 12.7 0.9 0.21 11.3 0.1 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain IMD PF08397.11 gi|297526275|ref|YP_003668299.1| - 0.089 12.2 6.9 0.12 11.7 6.9 1.2 1 0 0 1 1 1 0 IRSp53/MIM homology domain bZIP_1 PF00170.21 gi|297526275|ref|YP_003668299.1| - 0.09 12.9 16.9 0.1 12.7 10.9 2.7 1 1 1 2 2 2 0 bZIP transcription factor GLTP PF08718.11 gi|297526275|ref|YP_003668299.1| - 0.094 13.0 0.4 0.16 12.2 0.4 1.4 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) Sec2p PF06428.11 gi|297526275|ref|YP_003668299.1| - 0.1 12.5 12.1 1.3 9.0 12.1 2.4 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF1633 PF07794.11 gi|297526275|ref|YP_003668299.1| - 0.11 10.6 2.2 0.11 10.6 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) V-SNARE PF05008.15 gi|297526275|ref|YP_003668299.1| - 0.13 12.6 13.2 2.7 8.4 7.8 2.6 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus ApoLp-III PF07464.11 gi|297526275|ref|YP_003668299.1| - 0.14 12.3 9.2 0.26 11.4 9.1 1.6 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Atg14 PF10186.9 gi|297526275|ref|YP_003668299.1| - 0.15 11.1 6.8 0.21 10.7 6.8 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Exonuc_VII_L PF02601.15 gi|297526275|ref|YP_003668299.1| - 0.16 11.5 2.6 0.19 11.3 2.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DivIC PF04977.15 gi|297526275|ref|YP_003668299.1| - 0.22 11.3 13.4 0.18 11.6 7.8 2.7 1 1 1 2 2 2 0 Septum formation initiator Tho2 PF11262.8 gi|297526275|ref|YP_003668299.1| - 0.22 10.7 5.1 0.36 10.0 5.1 1.3 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 DUF724 PF05266.14 gi|297526275|ref|YP_003668299.1| - 0.26 11.1 12.0 0.32 10.8 11.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF724) DUF2203 PF09969.9 gi|297526275|ref|YP_003668299.1| - 0.34 11.6 3.4 0.76 10.5 3.4 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Swi5 PF07061.11 gi|297526275|ref|YP_003668299.1| - 0.38 10.9 10.6 0.19 11.8 7.2 2.2 1 1 1 2 2 2 0 Swi5 DUF948 PF06103.11 gi|297526275|ref|YP_003668299.1| - 0.39 11.0 1.7 0.99 9.7 1.7 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) HTH_40 PF14493.6 gi|297526275|ref|YP_003668299.1| - 0.41 11.1 10.2 8.3 6.9 8.1 2.9 2 1 0 2 2 1 0 Helix-turn-helix domain CEP63 PF17045.5 gi|297526275|ref|YP_003668299.1| - 0.44 10.4 16.1 0.13 12.1 12.1 1.9 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa zf-C4H2 PF10146.9 gi|297526275|ref|YP_003668299.1| - 0.49 10.7 7.6 0.69 10.2 7.6 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein OmpH PF03938.14 gi|297526275|ref|YP_003668299.1| - 0.59 10.5 11.3 0.89 9.9 10.9 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF4806 PF16064.5 gi|297526275|ref|YP_003668299.1| - 0.69 10.2 4.3 2.2 8.6 2.2 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4806) MCC-bdg_PDZ PF10506.9 gi|297526275|ref|YP_003668299.1| - 0.75 9.9 8.1 0.57 10.2 0.8 3.4 3 0 0 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome DUF641 PF04859.12 gi|297526275|ref|YP_003668299.1| - 0.78 10.1 10.7 1.2 9.4 8.6 2.0 1 1 0 2 2 2 0 Plant protein of unknown function (DUF641) GDPD PF03009.17 gi|297526275|ref|YP_003668299.1| - 0.93 9.2 3.4 4 7.1 3.1 1.8 1 1 1 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family ZapB PF06005.12 gi|297526275|ref|YP_003668299.1| - 0.95 10.0 18.7 0.84 10.1 16.0 2.4 2 1 0 2 2 1 0 Cell division protein ZapB FAM76 PF16046.5 gi|297526275|ref|YP_003668299.1| - 0.97 8.7 6.3 1.1 8.6 6.3 1.1 1 0 0 1 1 1 0 FAM76 protein DUF2205 PF10224.9 gi|297526275|ref|YP_003668299.1| - 1.2 9.2 11.8 3.2 7.8 10.1 2.3 1 1 1 2 2 2 0 Short coiled-coil protein Vps51 PF08700.11 gi|297526275|ref|YP_003668299.1| - 1.2 9.2 8.7 2.6 8.2 8.6 1.6 1 1 0 1 1 1 0 Vps51/Vps67 USP8_interact PF08941.10 gi|297526275|ref|YP_003668299.1| - 1.3 8.8 4.9 2.6 7.8 3.5 2.0 2 0 0 2 2 2 0 USP8 interacting V_ATPase_I PF01496.19 gi|297526275|ref|YP_003668299.1| - 1.4 6.8 6.6 1.6 6.5 6.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Trimer_CC PF08954.11 gi|297526275|ref|YP_003668299.1| - 1.7 8.3 6.7 2.9 7.5 5.5 2.1 1 1 0 1 1 1 0 Trimerisation motif XhlA PF10779.9 gi|297526275|ref|YP_003668299.1| - 2.6 8.3 17.2 0.42 10.9 5.9 2.8 2 1 1 3 3 2 0 Haemolysin XhlA DUF4140 PF13600.6 gi|297526275|ref|YP_003668299.1| - 2.8 8.5 5.9 8.2 6.9 5.1 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Spc29 PF17082.5 gi|297526275|ref|YP_003668299.1| - 3.1 7.6 10.5 2.5 7.9 3.8 2.6 1 1 2 3 3 3 0 Spindle Pole Component 29 eIF-4B PF06273.11 gi|297526275|ref|YP_003668299.1| - 3.5 6.6 6.0 3.9 6.4 6.0 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B DUF4482 PF14818.6 gi|297526275|ref|YP_003668299.1| - 5.4 7.9 12.4 19 6.1 12.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4482) DUF1192 PF06698.11 gi|297526275|ref|YP_003668299.1| - 9 6.4 9.9 28 4.8 7.0 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) TatD_DNase PF01026.21 gi|297526278|ref|YP_003668302.1| - 2e-46 158.5 0.1 2.4e-46 158.2 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Microvir_lysis PF04517.12 gi|297526278|ref|YP_003668302.1| - 0.0065 16.4 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 Microvirus lysis protein (E), C terminus ECH_2 PF16113.5 gi|297526279|ref|YP_003668303.1| - 0.03 13.8 0.0 0.062 12.8 0.0 1.4 1 1 1 2 2 2 0 Enoyl-CoA hydratase/isomerase AAA_lid_11 PF18198.1 gi|297526279|ref|YP_003668303.1| - 0.053 13.3 0.0 0.058 13.2 0.0 1.1 1 0 0 1 1 1 0 Dynein heavy chain AAA lid domain HAD_2 PF13419.6 gi|297526280|ref|YP_003668304.1| - 2e-16 60.6 0.0 6.1e-16 59.0 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|297526280|ref|YP_003668304.1| - 8.1e-15 55.7 0.1 1.1e-14 55.3 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|297526280|ref|YP_003668304.1| - 3e-05 24.0 0.0 5.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like ADH_zinc_N PF00107.26 gi|297526280|ref|YP_003668304.1| - 0.021 14.8 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Hydrolase PF00702.26 gi|297526280|ref|YP_003668304.1| - 0.095 13.0 0.0 0.2 11.9 0.0 1.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF4423 PF14394.6 gi|297526281|ref|YP_003668305.1| - 0.0033 17.1 0.0 0.0058 16.4 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) Rad1 PF02144.16 gi|297526281|ref|YP_003668305.1| - 0.076 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Repair protein Rad1/Rec1/Rad17 Radical_SAM PF04055.21 gi|297526282|ref|YP_003668306.1| - 2.2e-24 86.7 0.1 3.7e-24 86.0 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|297526282|ref|YP_003668306.1| - 2.2e-05 24.5 0.0 4.8e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain DUF167 PF02594.16 gi|297526283|ref|YP_003668307.1| - 4.6e-19 68.3 0.0 7.3e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 KH_7 PF17214.3 gi|297526283|ref|YP_003668307.1| - 0.096 12.7 0.9 0.34 10.9 0.0 2.3 2 1 1 3 3 3 0 KH domain Zn-ribbon_8 PF09723.10 gi|297526284|ref|YP_003668308.1| - 0.00084 19.4 1.6 0.0015 18.6 1.6 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|297526284|ref|YP_003668308.1| - 0.00087 19.2 0.1 0.0014 18.6 0.1 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type HypA PF01155.19 gi|297526284|ref|YP_003668308.1| - 0.0014 18.6 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIE_beta PF02186.15 gi|297526284|ref|YP_003668308.1| - 0.0014 18.8 0.1 0.0021 18.3 0.1 1.2 1 0 0 1 1 1 1 TFIIE beta subunit core domain HTH_5 PF01022.20 gi|297526284|ref|YP_003668308.1| - 0.0027 17.5 0.0 0.0058 16.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|297526284|ref|YP_003668308.1| - 0.0078 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|297526284|ref|YP_003668308.1| - 0.069 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DZR PF12773.7 gi|297526284|ref|YP_003668308.1| - 0.079 13.0 1.5 0.25 11.4 1.5 1.7 1 1 1 2 2 2 0 Double zinc ribbon TFIIS_C PF01096.18 gi|297526284|ref|YP_003668308.1| - 0.085 12.7 0.8 14 5.7 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4777 PF16007.5 gi|297526284|ref|YP_003668308.1| - 0.09 13.1 0.0 0.43 10.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) DprA_WH PF17782.1 gi|297526284|ref|YP_003668308.1| - 0.21 11.7 0.0 0.31 11.2 0.0 1.3 1 0 0 1 1 1 0 DprA winged helix domain FYDLN_acid PF09538.10 gi|297526284|ref|YP_003668308.1| - 0.22 12.2 2.3 0.33 11.6 2.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) UPF0547 PF10571.9 gi|297526284|ref|YP_003668308.1| - 1.3 9.1 5.6 2.5 8.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|297526284|ref|YP_003668308.1| - 1.9 8.5 3.8 3.3 7.7 0.4 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PALP PF00291.25 gi|297526285|ref|YP_003668309.1| - 1e-83 281.2 0.5 1.2e-83 280.9 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|297526285|ref|YP_003668309.1| - 6.7e-06 25.8 0.2 4.9e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 ACT domain PCMT PF01135.19 gi|297526285|ref|YP_003668309.1| - 0.0064 16.3 0.1 0.012 15.4 0.1 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF4368 PF14287.6 gi|297526285|ref|YP_003668309.1| - 0.14 12.5 0.3 0.45 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) ACT_6 PF13740.6 gi|297526285|ref|YP_003668309.1| - 0.15 12.0 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 ACT domain HAD PF12710.7 gi|297526286|ref|YP_003668310.1| - 3.4e-16 60.2 0.0 4.1e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|297526286|ref|YP_003668310.1| - 1.3e-15 58.3 0.0 6.1e-14 52.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|297526286|ref|YP_003668310.1| - 6.7e-11 42.6 0.0 1.6e-10 41.3 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|297526286|ref|YP_003668310.1| - 2.2e-06 27.6 0.0 0.00032 20.5 0.0 2.7 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|297526286|ref|YP_003668310.1| - 0.0018 17.7 0.0 0.026 13.9 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_6 PF13344.6 gi|297526286|ref|YP_003668310.1| - 0.0057 16.8 0.2 0.047 13.8 0.2 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|297526286|ref|YP_003668310.1| - 0.0098 15.8 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Acid_phosphat_B PF03767.14 gi|297526286|ref|YP_003668310.1| - 0.08 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) RUN PF02759.19 gi|297526286|ref|YP_003668310.1| - 0.38 10.7 1.4 8.8 6.3 0.0 2.9 2 1 1 3 3 3 0 RUN domain RmuC PF02646.16 gi|297526287|ref|YP_003668311.1| - 0.02 14.0 2.0 3.2 6.8 0.6 2.4 1 1 0 2 2 2 0 RmuC family DHR10 PF18595.1 gi|297526287|ref|YP_003668311.1| - 0.028 14.5 1.1 9.4 6.3 0.0 2.6 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain Laminin_I PF06008.14 gi|297526287|ref|YP_003668311.1| - 0.062 13.0 3.6 0.041 13.6 1.5 1.8 2 1 0 2 2 2 0 Laminin Domain I SAVED PF18145.1 gi|297526287|ref|YP_003668311.1| - 0.087 12.6 0.4 13 5.5 0.0 2.4 1 1 1 2 2 2 0 SMODS-associated and fused to various effectors sensor domain Fib_alpha PF08702.10 gi|297526287|ref|YP_003668311.1| - 0.5 10.6 3.8 0.45 10.7 0.5 2.4 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Adenosine_kin PF04008.14 gi|297526290|ref|YP_003668314.1| - 1.4e-74 249.0 0.1 1.7e-74 248.8 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Lentiviral_Tat PF02998.14 gi|297526291|ref|YP_003668315.1| - 0.016 15.2 1.7 0.017 15.1 0.0 1.9 2 0 0 2 2 2 0 Lentiviral Tat protein ROK PF00480.20 gi|297526291|ref|YP_003668315.1| - 0.13 11.7 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 ROK family PNP_UDP_1 PF01048.20 gi|297526292|ref|YP_003668316.1| - 4.4e-44 150.5 0.1 5e-44 150.3 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily tRNA-synt_1e PF01406.19 gi|297526293|ref|YP_003668317.1| - 4.3e-125 417.1 0.1 5.5e-125 416.7 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|297526293|ref|YP_003668317.1| - 7.5e-13 48.0 1.1 1.3e-07 30.7 0.3 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|297526293|ref|YP_003668317.1| - 5e-08 33.3 0.2 1.7e-07 31.6 0.0 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1 PF00133.22 gi|297526293|ref|YP_003668317.1| - 9.9e-06 24.1 0.0 0.00013 20.4 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|297526293|ref|YP_003668317.1| - 0.00093 18.2 0.8 0.0024 16.8 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) ArsA_ATPase PF02374.15 gi|297526293|ref|YP_003668317.1| - 0.037 13.2 0.5 0.079 12.1 0.5 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase tRNA-synt_1c PF00749.21 gi|297526293|ref|YP_003668317.1| - 0.042 12.7 0.5 0.24 10.2 0.1 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain DUF948 PF06103.11 gi|297526293|ref|YP_003668317.1| - 0.33 11.2 1.3 6.1 7.2 0.1 2.8 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) UPF0102 PF02021.17 gi|297526294|ref|YP_003668318.1| - 7.9e-05 22.8 0.4 7.9e-05 22.8 0.4 1.8 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 HTH_24 PF13412.6 gi|297526294|ref|YP_003668318.1| - 0.00015 21.2 0.9 0.002 17.7 0.1 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Dodecin PF07311.12 gi|297526294|ref|YP_003668318.1| - 0.001 19.2 0.5 0.0029 17.8 0.5 1.7 1 0 0 1 1 1 1 Dodecin HTH_Crp_2 PF13545.6 gi|297526294|ref|YP_003668318.1| - 0.0051 16.8 0.1 0.054 13.5 0.1 2.4 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|297526294|ref|YP_003668318.1| - 0.012 15.5 0.7 0.039 13.9 0.1 2.3 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.16 gi|297526294|ref|YP_003668318.1| - 0.013 15.8 1.8 0.48 10.8 0.5 2.4 1 1 1 2 2 2 0 Penicillinase repressor GerE PF00196.19 gi|297526294|ref|YP_003668318.1| - 0.047 13.2 0.1 0.14 11.7 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SfsA PF03749.13 gi|297526294|ref|YP_003668318.1| - 0.048 13.6 0.4 0.17 11.8 0.1 1.9 2 1 0 2 2 2 0 Sugar fermentation stimulation protein RE domain DUF3791 PF12668.7 gi|297526294|ref|YP_003668318.1| - 0.05 13.6 1.1 0.25 11.4 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) IF2_N PF04760.15 gi|297526294|ref|YP_003668318.1| - 0.052 13.4 0.7 0.89 9.4 0.1 2.9 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF4143 PF13635.6 gi|297526294|ref|YP_003668318.1| - 0.058 13.5 0.5 0.12 12.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4143) Hydantoinase_A PF01968.18 gi|297526294|ref|YP_003668318.1| - 0.063 12.5 0.3 0.22 10.7 0.1 1.9 1 1 1 2 2 2 0 Hydantoinase/oxoprolinase LexA_DNA_bind PF01726.16 gi|297526294|ref|YP_003668318.1| - 0.11 12.3 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_11 PF08279.12 gi|297526294|ref|YP_003668318.1| - 0.24 11.4 4.1 0.92 9.5 0.1 3.3 4 0 0 4 4 4 0 HTH domain HTH_10 PF04967.12 gi|297526294|ref|YP_003668318.1| - 0.35 10.7 3.4 5.5 6.9 0.2 2.8 3 0 0 3 3 3 0 HTH DNA binding domain Mga PF05043.13 gi|297526294|ref|YP_003668318.1| - 1.1 9.9 7.7 5.3 7.7 0.2 3.1 2 1 1 3 3 3 0 Mga helix-turn-helix domain Glyco_trans_1_4 PF13692.6 gi|297526295|ref|YP_003668319.1| - 0.00072 20.0 0.0 0.0013 19.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Radical_SAM PF04055.21 gi|297526296|ref|YP_003668320.1| - 1.3e-07 32.1 2.9 6.2e-07 29.9 0.5 3.0 3 2 0 3 3 3 1 Radical SAM superfamily DUF1848 PF08902.11 gi|297526296|ref|YP_003668320.1| - 0.024 14.3 1.6 3.5 7.3 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1848) DUF2795 PF11387.8 gi|297526296|ref|YP_003668320.1| - 0.064 13.5 0.8 14 6.0 0.0 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF2795) AA_kinase PF00696.28 gi|297526299|ref|YP_003668323.1| - 8.4e-28 97.6 0.0 1e-27 97.3 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family LisH_2 PF16045.5 gi|297526299|ref|YP_003668323.1| - 0.41 9.7 1.6 0.41 9.7 0.3 1.7 2 0 0 2 2 2 0 LisH DUF3755 PF12579.8 gi|297526299|ref|YP_003668323.1| - 5.2 6.8 4.7 0.59 9.8 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3755) TMEM220 PF15071.6 gi|297526300|ref|YP_003668324.1| - 0.16 12.8 4.4 0.17 12.6 1.0 2.8 2 0 0 2 2 2 0 Transmembrane family 220, helix TP_methylase PF00590.20 gi|297526301|ref|YP_003668325.1| - 5.4e-26 91.9 0.0 6.4e-26 91.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peripla_BP_2 PF01497.18 gi|297526302|ref|YP_003668326.1| - 2.4e-25 89.5 0.1 3.5e-25 88.9 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF999 PF06198.11 gi|297526302|ref|YP_003668326.1| - 0.00088 19.3 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF999) TMEM154 PF15102.6 gi|297526302|ref|YP_003668326.1| - 0.05 13.5 9.3 0.11 12.4 9.3 1.6 1 0 0 1 1 1 0 TMEM154 protein family Polbeta PF18765.1 gi|297526302|ref|YP_003668326.1| - 0.056 13.5 0.2 0.12 12.5 0.2 1.5 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Mucin PF01456.17 gi|297526302|ref|YP_003668326.1| - 0.31 11.0 38.4 0.57 10.2 38.4 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein AIP3 PF03915.13 gi|297526302|ref|YP_003668326.1| - 0.39 9.8 0.0 0.39 9.8 0.0 1.5 2 0 0 2 2 2 0 Actin interacting protein 3 DUF5305 PF17231.2 gi|297526302|ref|YP_003668326.1| - 1.3 8.4 17.7 0.22 10.9 12.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5305) FecCD PF01032.18 gi|297526303|ref|YP_003668327.1| - 5.1e-58 196.5 40.8 6.5e-58 196.2 40.8 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|297526304|ref|YP_003668328.1| - 1.6e-26 93.4 0.0 2.1e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526304|ref|YP_003668328.1| - 3.7e-14 53.3 1.3 4.4e-06 26.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|297526304|ref|YP_003668328.1| - 6e-08 32.8 0.0 1.8e-06 27.9 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|297526304|ref|YP_003668328.1| - 2.7e-06 27.0 0.1 4.2e-05 23.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|297526304|ref|YP_003668328.1| - 1.5e-05 25.6 1.0 2.5e-05 24.9 0.4 1.6 1 1 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|297526304|ref|YP_003668328.1| - 2.5e-05 24.5 1.0 0.00049 20.4 1.0 2.2 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|297526304|ref|YP_003668328.1| - 6.2e-05 23.0 0.0 0.00015 21.7 0.0 1.7 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|297526304|ref|YP_003668328.1| - 9.4e-05 22.5 0.2 0.0037 17.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|297526304|ref|YP_003668328.1| - 0.00015 21.5 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|297526304|ref|YP_003668328.1| - 0.00028 21.3 0.0 0.00041 20.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|297526304|ref|YP_003668328.1| - 0.0004 20.0 0.1 0.00085 19.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|297526304|ref|YP_003668328.1| - 0.00058 20.3 0.0 0.00097 19.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|297526304|ref|YP_003668328.1| - 0.0014 18.6 0.1 0.0018 18.3 0.1 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|297526304|ref|YP_003668328.1| - 0.0046 16.9 0.7 0.019 14.9 0.1 2.0 2 0 0 2 2 2 1 NACHT domain AAA_27 PF13514.6 gi|297526304|ref|YP_003668328.1| - 0.005 16.5 0.0 0.013 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|297526304|ref|YP_003668328.1| - 0.005 17.4 0.3 0.063 13.8 0.3 2.2 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|297526304|ref|YP_003668328.1| - 0.0056 15.5 0.3 0.0087 14.9 0.3 1.2 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|297526304|ref|YP_003668328.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|297526304|ref|YP_003668328.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|297526304|ref|YP_003668328.1| - 0.015 14.9 0.2 0.032 13.8 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|297526304|ref|YP_003668328.1| - 0.017 14.4 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATP-synt_ab PF00006.25 gi|297526304|ref|YP_003668328.1| - 0.021 14.5 0.0 0.026 14.2 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF4894 PF16235.5 gi|297526304|ref|YP_003668328.1| - 0.033 14.5 0.2 0.72 10.2 0.0 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4894) NB-ARC PF00931.22 gi|297526304|ref|YP_003668328.1| - 0.034 13.3 0.0 0.043 13.0 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|297526304|ref|YP_003668328.1| - 0.04 13.9 0.1 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|297526304|ref|YP_003668328.1| - 0.045 14.0 0.0 0.076 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|297526304|ref|YP_003668328.1| - 0.054 13.7 0.1 0.16 12.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.7 gi|297526304|ref|YP_003668328.1| - 0.081 11.8 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain KH_2 PF07650.17 gi|297526304|ref|YP_003668328.1| - 0.086 12.7 0.2 0.24 11.2 0.2 1.7 1 0 0 1 1 1 0 KH domain AAA_5 PF07728.14 gi|297526304|ref|YP_003668328.1| - 0.092 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 gi|297526304|ref|YP_003668328.1| - 0.11 11.7 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SRP54 PF00448.22 gi|297526304|ref|YP_003668328.1| - 0.11 12.1 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|297526304|ref|YP_003668328.1| - 0.12 12.7 0.8 0.26 11.6 0.7 1.8 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|297526304|ref|YP_003668328.1| - 0.13 11.7 0.2 0.2 11.1 0.2 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DEAD PF00270.29 gi|297526304|ref|YP_003668328.1| - 0.15 11.9 0.1 0.33 10.7 0.1 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase T2SSE PF00437.20 gi|297526304|ref|YP_003668328.1| - 0.15 11.1 0.5 0.31 10.1 0.3 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein DUF3584 PF12128.8 gi|297526304|ref|YP_003668328.1| - 0.16 9.5 0.2 0.22 9.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|297526304|ref|YP_003668328.1| - 0.24 10.0 0.1 0.36 9.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain Isochorismatase PF00857.20 gi|297526306|ref|YP_003668330.1| - 3.3e-50 170.7 0.0 3.7e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Radical_SAM PF04055.21 gi|297526307|ref|YP_003668331.1| - 3.9e-11 43.6 0.2 1.2e-10 42.0 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily RHH_1 PF01402.21 gi|297526308|ref|YP_003668332.1| - 0.018 15.0 2.4 0.24 11.4 0.8 3.2 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family YpzI PF14140.6 gi|297526308|ref|YP_003668332.1| - 0.038 13.8 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 YpzI-like protein DUF3333 PF11812.8 gi|297526308|ref|YP_003668332.1| - 0.059 13.6 0.1 0.072 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) DUF188 PF02639.14 gi|297526308|ref|YP_003668332.1| - 0.092 12.4 0.5 0.11 12.1 0.1 1.4 2 0 0 2 2 2 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Pesticin PF16754.5 gi|297526308|ref|YP_003668332.1| - 0.12 12.3 0.0 0.14 12.1 0.0 1.0 1 0 0 1 1 1 0 Bacterial toxin homologue of phage lysozyme, C-term ODV-E18 PF10717.9 gi|297526309|ref|YP_003668333.1| - 0.64 9.9 2.4 14 5.6 0.2 2.3 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 OrfB_Zn_ribbon PF07282.11 gi|297526310|ref|YP_003668334.1| - 4.9e-18 64.8 0.0 1.1e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Hydrolase_3 PF08282.12 gi|297526311|ref|YP_003668335.1| - 5.4e-18 65.7 5.7 7.7e-18 65.2 5.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|297526311|ref|YP_003668335.1| - 0.0074 16.6 0.0 0.12 12.6 0.0 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|297526311|ref|YP_003668335.1| - 0.032 14.3 0.0 0.073 13.2 0.0 1.8 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Osmo_MPGsynth PF09488.10 gi|297526312|ref|YP_003668336.1| - 1.1e-152 508.3 0.0 1.2e-152 508.1 0.0 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) ELFV_dehydrog PF00208.21 gi|297526313|ref|YP_003668337.1| - 1.8e-78 263.6 0.6 2.3e-78 263.3 0.6 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|297526313|ref|YP_003668337.1| - 6.8e-53 178.0 0.0 1.3e-52 177.1 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|297526313|ref|YP_003668337.1| - 3.4e-05 23.3 0.6 5.8e-05 22.5 0.6 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|297526313|ref|YP_003668337.1| - 0.0028 17.7 1.0 0.0057 16.7 0.7 1.6 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Bac_GDH PF05088.12 gi|297526313|ref|YP_003668337.1| - 0.0091 13.5 0.0 0.012 13.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.12 gi|297526313|ref|YP_003668337.1| - 0.05 13.2 0.4 0.11 12.1 0.4 1.7 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|297526313|ref|YP_003668337.1| - 0.056 13.9 0.1 0.11 12.9 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|297526313|ref|YP_003668337.1| - 0.085 12.9 0.2 0.29 11.2 0.2 1.9 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|297526313|ref|YP_003668337.1| - 0.12 12.6 0.6 0.56 10.5 0.6 2.2 1 1 0 1 1 1 0 TrkA-N domain Dimerisation PF08100.11 gi|297526313|ref|YP_003668337.1| - 0.16 12.0 0.0 0.96 9.5 0.0 2.4 2 0 0 2 2 2 0 Dimerisation domain DUF3158 PF11358.8 gi|297526313|ref|YP_003668337.1| - 0.17 11.6 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3158) MJ1316 PF04457.12 gi|297526314|ref|YP_003668338.1| - 3.9e-10 40.3 1.2 4.5e-10 40.1 1.2 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain DUF134 PF02001.16 gi|297526315|ref|YP_003668339.1| - 4e-16 59.4 0.0 5.2e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|297526315|ref|YP_003668339.1| - 4.1e-07 29.6 0.0 6.7e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|297526315|ref|YP_003668339.1| - 9.4e-06 25.1 0.1 1.5e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|297526315|ref|YP_003668339.1| - 0.00073 19.6 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_psq PF05225.16 gi|297526315|ref|YP_003668339.1| - 0.0018 18.0 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_23 PF13384.6 gi|297526315|ref|YP_003668339.1| - 0.0032 17.2 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_31 PF13560.6 gi|297526315|ref|YP_003668339.1| - 0.0052 17.1 0.0 0.0069 16.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|297526315|ref|YP_003668339.1| - 0.0077 16.3 0.1 0.015 15.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|297526315|ref|YP_003668339.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_8 PF02954.19 gi|297526315|ref|YP_003668339.1| - 0.043 13.6 0.1 0.09 12.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_10 PF04967.12 gi|297526315|ref|YP_003668339.1| - 0.085 12.7 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain polyprenyl_synt PF00348.17 gi|297526316|ref|YP_003668340.1| - 2.8e-58 197.0 0.0 4e-58 196.5 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF4890 PF16231.5 gi|297526316|ref|YP_003668340.1| - 0.029 14.8 0.3 0.049 14.1 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4890) EcoEI_R_C PF08463.10 gi|297526316|ref|YP_003668340.1| - 0.038 14.1 0.5 0.099 12.8 0.5 1.7 2 0 0 2 2 2 0 EcoEI R protein C-terminal 5-FTHF_cyc-lig PF01812.20 gi|297526317|ref|YP_003668341.1| - 2.4e-36 125.3 0.0 2.9e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family OMPdecase PF00215.24 gi|297526318|ref|YP_003668342.1| - 1.2e-23 83.9 0.5 1.5e-23 83.6 0.5 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.21 gi|297526318|ref|YP_003668342.1| - 2.4e-05 23.9 0.1 3.8e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.19 gi|297526318|ref|YP_003668342.1| - 2.6e-05 23.7 0.6 3.9e-05 23.1 0.6 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family NanE PF04131.14 gi|297526318|ref|YP_003668342.1| - 5.7e-05 22.4 0.2 0.0002 20.6 0.1 1.9 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|297526318|ref|YP_003668342.1| - 0.00024 20.5 0.3 0.00041 19.7 0.3 1.3 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|297526318|ref|YP_003668342.1| - 0.0016 18.0 0.4 0.0037 16.8 0.3 1.6 2 0 0 2 2 2 1 PcrB family IMPDH PF00478.25 gi|297526318|ref|YP_003668342.1| - 0.0016 17.5 0.9 0.002 17.2 0.9 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain PEP_hydrolase PF09370.10 gi|297526318|ref|YP_003668342.1| - 0.012 14.8 0.1 2.1 7.5 0.0 2.4 1 1 1 2 2 2 0 Phosphoenolpyruvate hydrolase-like TMP-TENI PF02581.17 gi|297526318|ref|YP_003668342.1| - 0.014 14.8 0.2 0.02 14.2 0.2 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase FMN_dh PF01070.18 gi|297526318|ref|YP_003668342.1| - 0.017 14.1 0.1 0.022 13.8 0.1 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Trp_syntA PF00290.20 gi|297526318|ref|YP_003668342.1| - 0.023 13.6 0.4 0.035 13.0 0.3 1.4 1 1 0 1 1 1 0 Tryptophan synthase alpha chain QRPTase_C PF01729.19 gi|297526318|ref|YP_003668342.1| - 0.082 12.7 0.1 0.11 12.3 0.1 1.3 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain tRNA-synt_1b PF00579.25 gi|297526319|ref|YP_003668343.1| - 1.1e-44 153.0 0.0 1.6e-44 152.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|297526319|ref|YP_003668343.1| - 0.021 13.7 0.0 0.57 9.0 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF4392 PF14336.6 gi|297526319|ref|YP_003668343.1| - 0.047 13.1 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) Glyco_hydro_70 PF02324.16 gi|297526319|ref|YP_003668343.1| - 0.26 9.4 0.0 0.37 8.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 Amidohydro_1 PF01979.20 gi|297526320|ref|YP_003668344.1| - 2.6e-07 30.3 0.0 2.5e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 Amidohydrolase family DHBP_synthase PF00926.19 gi|297526321|ref|YP_003668345.1| - 7.3e-43 146.3 0.0 9.2e-43 146.0 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.19 gi|297526322|ref|YP_003668346.1| - 7.2e-12 45.3 0.1 8.4e-12 45.1 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|297526323|ref|YP_003668347.1| - 6.3e-38 129.8 0.1 7.1e-38 129.6 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase GCH_III PF05165.12 gi|297526324|ref|YP_003668348.1| - 4.3e-39 134.2 0.0 7.1e-39 133.5 0.0 1.3 1 1 0 1 1 1 1 GTP cyclohydrolase III Peptidase_A2E PF12382.8 gi|297526325|ref|YP_003668349.1| - 0.0019 18.2 2.1 0.0056 16.7 2.1 1.8 1 0 0 1 1 1 1 Retrotransposon peptidase MG4 PF17789.1 gi|297526325|ref|YP_003668349.1| - 0.014 15.5 1.5 0.043 14.0 0.0 2.5 2 0 0 2 2 2 0 Macroglobulin domain MG4 DUF4198 PF10670.9 gi|297526325|ref|YP_003668349.1| - 0.022 15.2 0.1 0.072 13.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) DUF2149 PF09919.9 gi|297526325|ref|YP_003668349.1| - 0.024 14.9 0.3 0.088 13.1 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) CutA1 PF03091.15 gi|297526326|ref|YP_003668350.1| - 2.8e-21 75.2 0.0 3.3e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein MazE_antitoxin PF04014.18 gi|297526327|ref|YP_003668351.1| - 2e-07 30.8 0.0 2.8e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|297526327|ref|YP_003668351.1| - 0.02 15.3 0.0 0.02 15.3 0.0 1.0 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PDZ_6 PF17820.1 gi|297526327|ref|YP_003668351.1| - 0.05 13.5 0.0 0.093 12.6 0.0 1.4 2 0 0 2 2 2 0 PDZ domain TOBE PF03459.17 gi|297526327|ref|YP_003668351.1| - 0.054 13.8 0.0 0.068 13.5 0.0 1.1 1 0 0 1 1 1 0 TOBE domain DUF4943 PF16301.5 gi|297526328|ref|YP_003668352.1| - 0.057 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4943) SapB_1 PF05184.15 gi|297526328|ref|YP_003668352.1| - 0.15 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Saposin-like type B, region 1 GFRP PF06399.13 gi|297526329|ref|YP_003668353.1| - 0.16 11.8 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) Snf7 PF03357.21 gi|297526331|ref|YP_003668355.1| - 0.00084 19.0 2.8 0.0014 18.3 2.8 1.5 1 1 0 1 1 1 1 Snf7 DUF4125 PF13526.6 gi|297526331|ref|YP_003668355.1| - 0.024 14.2 0.3 0.045 13.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4125) BLOC1S3 PF15753.5 gi|297526331|ref|YP_003668355.1| - 0.038 14.1 0.3 0.16 12.1 0.2 2.0 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 HisK_N PF09385.10 gi|297526331|ref|YP_003668355.1| - 0.055 13.4 0.5 0.11 12.5 0.5 1.5 1 0 0 1 1 1 0 Histidine kinase N terminal ArnB_C PF18677.1 gi|297526331|ref|YP_003668355.1| - 0.087 12.9 2.0 0.14 12.3 0.2 2.2 2 1 1 3 3 3 0 Archaellum regulatory network B, C-terminal domain UCH PF00443.29 gi|297526331|ref|YP_003668355.1| - 0.11 12.0 0.1 0.13 11.7 0.1 1.1 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase LOH1CR12 PF10158.9 gi|297526331|ref|YP_003668355.1| - 0.14 12.1 1.9 0.19 11.8 0.2 2.1 3 0 0 3 3 3 0 Tumour suppressor protein Peptidase_M41 PF01434.18 gi|297526331|ref|YP_003668355.1| - 0.39 10.5 3.6 0.63 9.9 0.1 2.3 2 1 0 2 2 2 0 Peptidase family M41 MnmE_helical PF12631.7 gi|297526331|ref|YP_003668355.1| - 1.5 8.9 4.4 16 5.6 0.3 2.5 2 1 0 2 2 2 0 MnmE helical domain Lectin_legB PF00139.19 gi|297526332|ref|YP_003668356.1| - 0.22 11.0 0.0 0.3 10.6 0.0 1.1 1 0 0 1 1 1 0 Legume lectin domain AIRS PF00586.24 gi|297526333|ref|YP_003668357.1| - 9.9e-17 61.4 0.0 3.1e-16 59.8 0.0 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|297526333|ref|YP_003668357.1| - 1e-14 55.0 0.0 2.4e-14 53.8 0.0 1.6 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain zf-B_box PF00643.24 gi|297526334|ref|YP_003668358.1| - 2.5e-06 27.5 31.5 0.0011 19.1 5.4 3.9 2 1 2 4 4 4 3 B-box zinc finger zf-HIT PF04438.16 gi|297526334|ref|YP_003668358.1| - 4.9e-05 23.1 6.2 4.9e-05 23.1 6.2 4.9 2 1 2 4 4 4 1 HIT zinc finger Prok-RING_2 PF14445.6 gi|297526334|ref|YP_003668358.1| - 0.0078 16.4 23.8 0.23 11.6 8.6 2.6 1 1 1 2 2 2 2 Prokaryotic RING finger family 2 PHF5 PF03660.14 gi|297526334|ref|YP_003668358.1| - 0.51 10.6 20.1 27 5.0 19.6 2.3 1 1 0 1 1 1 0 PHF5-like protein Ribosomal_L28 PF00830.19 gi|297526334|ref|YP_003668358.1| - 3 8.1 8.1 18 5.6 0.2 4.0 3 2 1 4 4 4 0 Ribosomal L28 family TatD_DNase PF01026.21 gi|297526336|ref|YP_003668360.1| - 6.5e-18 65.0 0.0 7.8e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase HHH_5 PF14520.6 gi|297526336|ref|YP_003668360.1| - 0.088 13.4 0.2 29 5.4 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix domain Amidohydro_1 PF01979.20 gi|297526336|ref|YP_003668360.1| - 0.093 12.0 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase family GAS PF13851.6 gi|297526337|ref|YP_003668361.1| - 0.00018 21.0 0.6 0.00018 21.0 0.6 1.7 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding Herpes_UL6 PF01763.16 gi|297526337|ref|YP_003668361.1| - 0.0026 16.4 0.4 0.0032 16.1 0.4 1.3 1 0 0 1 1 1 1 Herpesvirus UL6 like TEX12 PF15219.6 gi|297526337|ref|YP_003668361.1| - 0.0045 17.3 0.1 5.4 7.4 0.0 2.6 2 0 0 2 2 2 2 Testis-expressed 12 DUF1664 PF07889.12 gi|297526337|ref|YP_003668361.1| - 0.0054 16.8 1.2 0.011 15.8 1.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|297526337|ref|YP_003668361.1| - 0.019 15.4 5.8 0.026 15.0 3.3 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein HSBP1 PF06825.12 gi|297526337|ref|YP_003668361.1| - 0.021 14.7 0.5 0.061 13.2 0.5 1.8 1 0 0 1 1 1 0 Heat shock factor binding protein 1 FAM76 PF16046.5 gi|297526337|ref|YP_003668361.1| - 0.027 13.8 0.9 0.034 13.5 0.9 1.1 1 0 0 1 1 1 0 FAM76 protein DUF4665 PF15679.5 gi|297526337|ref|YP_003668361.1| - 0.065 13.9 1.0 0.15 12.7 1.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4665) Rootletin PF15035.6 gi|297526337|ref|YP_003668361.1| - 0.078 13.0 0.6 0.13 12.3 0.6 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion SlyX PF04102.12 gi|297526337|ref|YP_003668361.1| - 0.09 13.4 1.5 0.15 12.7 0.2 2.1 2 1 0 2 2 2 0 SlyX Baculo_PEP_C PF04513.12 gi|297526337|ref|YP_003668361.1| - 0.091 12.8 0.2 0.16 12.0 0.2 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|297526337|ref|YP_003668361.1| - 0.11 12.8 1.9 0.2 11.9 1.9 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1465 PF07323.12 gi|297526337|ref|YP_003668361.1| - 0.11 12.3 0.5 0.18 11.6 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) ApoLp-III PF07464.11 gi|297526337|ref|YP_003668361.1| - 0.12 12.5 1.8 0.14 12.2 0.3 1.7 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Fib_alpha PF08702.10 gi|297526337|ref|YP_003668361.1| - 0.16 12.2 2.1 0.29 11.3 2.1 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4164 PF13747.6 gi|297526337|ref|YP_003668361.1| - 0.41 11.0 3.3 0.33 11.3 0.4 2.4 3 1 0 3 3 2 0 Domain of unknown function (DUF4164) MIP-T3_C PF17749.1 gi|297526337|ref|YP_003668361.1| - 0.43 10.5 5.4 3.5 7.6 1.1 2.4 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Bacillus_HBL PF05791.11 gi|297526337|ref|YP_003668361.1| - 0.55 10.0 5.7 10 5.9 0.1 3.1 3 1 0 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) CCDC-167 PF15188.6 gi|297526337|ref|YP_003668361.1| - 0.71 10.3 4.9 22 5.5 4.9 2.6 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 Osmo_CC PF08946.10 gi|297526337|ref|YP_003668361.1| - 4.8 7.5 7.3 0.44 10.8 2.0 2.1 2 1 0 2 2 1 0 Osmosensory transporter coiled coil Lactamase_B_2 PF12706.7 gi|297526338|ref|YP_003668362.1| - 4.4e-06 26.4 0.0 8.1e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|297526338|ref|YP_003668362.1| - 1.1e-05 25.6 0.2 2.5e-05 24.4 0.2 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|297526338|ref|YP_003668362.1| - 0.00013 21.8 0.0 0.00049 20.0 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain DUF5482 PF17579.2 gi|297526338|ref|YP_003668362.1| - 0.067 13.1 0.0 0.18 11.6 0.0 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5482) Glucodextran_B PF09136.10 gi|297526339|ref|YP_003668363.1| - 0.14 12.5 0.1 0.5 10.8 0.1 1.9 2 0 0 2 2 2 0 Glucodextranase, domain B Pyrophosphatase PF00719.19 gi|297526340|ref|YP_003668364.1| - 2.8e-59 199.5 0.1 3.2e-59 199.3 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF5622 PF18533.1 gi|297526340|ref|YP_003668364.1| - 0.13 12.4 1.8 3.2 8.0 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF5622) FUSC PF04632.12 gi|297526341|ref|YP_003668365.1| - 0.00018 20.2 0.1 0.0002 20.0 0.1 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family BLOC1_2 PF10046.9 gi|297526341|ref|YP_003668365.1| - 0.0076 16.5 2.4 1.3 9.3 0.3 2.3 1 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1993 PF09351.10 gi|297526341|ref|YP_003668365.1| - 0.0081 16.3 1.2 0.4 10.8 0.1 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF1993) RasGAP_C PF03836.15 gi|297526341|ref|YP_003668365.1| - 0.01 15.9 4.9 0.015 15.4 0.9 2.1 1 1 1 2 2 2 0 RasGAP C-terminus CLZ PF16526.5 gi|297526341|ref|YP_003668365.1| - 0.011 16.1 4.8 0.24 11.8 0.1 2.4 1 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels NOG1_N PF17835.1 gi|297526341|ref|YP_003668365.1| - 0.023 14.7 1.9 1.9 8.4 0.1 2.3 1 1 0 2 2 2 0 NOG1 N-terminal helical domain Fib_alpha PF08702.10 gi|297526341|ref|YP_003668365.1| - 0.031 14.5 5.2 0.04 14.1 5.2 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DciA PF05258.12 gi|297526341|ref|YP_003668365.1| - 0.034 14.6 0.3 0.064 13.7 0.3 1.5 1 0 0 1 1 1 0 Dna[CI] antecedent, DciA FliJ PF02050.16 gi|297526341|ref|YP_003668365.1| - 0.039 14.2 4.3 0.05 13.8 0.9 2.0 2 0 0 2 2 2 0 Flagellar FliJ protein Uds1 PF15456.6 gi|297526341|ref|YP_003668365.1| - 0.056 13.6 5.1 0.089 13.0 5.1 1.3 1 1 0 1 1 1 0 Up-regulated During Septation DHC_N2 PF08393.13 gi|297526341|ref|YP_003668365.1| - 0.068 12.3 3.5 0.13 11.4 3.5 1.4 1 1 0 1 1 1 0 Dynein heavy chain, N-terminal region 2 Prefoldin PF02996.17 gi|297526341|ref|YP_003668365.1| - 0.068 13.1 5.3 1 9.3 0.1 2.3 2 1 0 2 2 2 0 Prefoldin subunit DASH_Dad4 PF08650.10 gi|297526341|ref|YP_003668365.1| - 0.069 13.1 2.1 0.19 11.7 0.3 2.0 2 0 0 2 2 2 0 DASH complex subunit Dad4 MitMem_reg PF13012.6 gi|297526341|ref|YP_003668365.1| - 0.073 13.5 2.3 0.35 11.3 2.3 1.9 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function DUF5082 PF16888.5 gi|297526341|ref|YP_003668365.1| - 0.075 13.3 4.2 0.14 12.5 4.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Rx_N PF18052.1 gi|297526341|ref|YP_003668365.1| - 0.079 13.2 3.9 0.24 11.7 0.7 2.1 2 0 0 2 2 2 0 Rx N-terminal domain CK2S PF15011.6 gi|297526341|ref|YP_003668365.1| - 0.088 12.7 2.8 0.27 11.1 0.1 2.2 1 1 1 2 2 2 0 Casein Kinase 2 substrate YabA PF06156.13 gi|297526341|ref|YP_003668365.1| - 0.11 13.1 3.6 0.33 11.6 0.9 2.1 2 0 0 2 2 2 0 Initiation control protein YabA DUF1043 PF06295.12 gi|297526341|ref|YP_003668365.1| - 0.11 12.4 2.7 0.28 11.2 1.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF3375 PF11855.8 gi|297526341|ref|YP_003668365.1| - 0.13 11.2 6.6 1.6 7.6 0.2 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF3375) DUF4795 PF16043.5 gi|297526341|ref|YP_003668365.1| - 0.15 11.6 7.7 0.25 10.9 7.7 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) V_ATPase_I PF01496.19 gi|297526341|ref|YP_003668365.1| - 0.16 9.9 2.0 0.19 9.6 2.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CorA PF01544.18 gi|297526341|ref|YP_003668365.1| - 0.19 11.0 5.4 0.25 10.6 5.4 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SWI-SNF_Ssr4 PF08549.10 gi|297526341|ref|YP_003668365.1| - 0.19 10.3 2.5 0.21 10.2 2.5 1.0 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) COG2 PF06148.11 gi|297526341|ref|YP_003668365.1| - 0.23 11.6 5.9 0.25 11.4 1.1 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.12 gi|297526341|ref|YP_003668365.1| - 0.28 11.2 3.5 12 6.0 3.5 2.2 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fzo_mitofusin PF04799.13 gi|297526341|ref|YP_003668365.1| - 0.81 9.2 5.9 5.4 6.5 0.3 2.1 1 1 0 2 2 2 0 fzo-like conserved region SSFA2_C PF14723.6 gi|297526341|ref|YP_003668365.1| - 1.2 9.0 6.2 12 5.7 0.7 2.1 1 1 1 2 2 2 0 Sperm-specific antigen 2 C-terminus DUF2203 PF09969.9 gi|297526341|ref|YP_003668365.1| - 1.3 9.7 4.1 6.7 7.5 4.2 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) APG6_N PF17675.1 gi|297526341|ref|YP_003668365.1| - 1.9 9.0 8.9 3.8 8.1 8.9 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region XhlA PF10779.9 gi|297526341|ref|YP_003668365.1| - 6.8 7.0 8.7 3.7 7.8 0.7 2.4 1 1 1 2 2 2 0 Haemolysin XhlA CoA_binding PF02629.19 gi|297526342|ref|YP_003668366.1| - 7.4e-31 106.7 3.1 1.8e-30 105.5 1.7 2.2 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|297526342|ref|YP_003668366.1| - 7.5e-16 58.2 0.0 7.3e-15 55.0 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.19 gi|297526342|ref|YP_003668366.1| - 8.3e-16 58.2 0.0 1.4e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|297526342|ref|YP_003668366.1| - 1.2e-06 29.0 0.0 3.5e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.12 gi|297526342|ref|YP_003668366.1| - 0.0018 17.9 0.4 0.0032 17.1 0.4 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain DapB_N PF01113.20 gi|297526342|ref|YP_003668366.1| - 0.1 12.7 0.7 0.19 11.9 0.7 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Radical_SAM PF04055.21 gi|297526342|ref|YP_003668366.1| - 0.17 12.3 0.1 0.8 10.1 0.0 2.1 2 1 0 2 2 2 0 Radical SAM superfamily ATP-grasp_2 PF08442.10 gi|297526343|ref|YP_003668367.1| - 5.7e-58 195.8 0.1 1.1e-57 194.9 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|297526343|ref|YP_003668367.1| - 1.9e-18 66.7 0.2 3.1e-18 66.1 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|297526343|ref|YP_003668367.1| - 1.3e-09 37.8 0.1 3.2e-09 36.6 0.1 1.7 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|297526343|ref|YP_003668367.1| - 1.4e-05 25.0 0.5 3.2e-05 23.8 0.1 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF1848 PF08902.11 gi|297526343|ref|YP_003668367.1| - 0.0056 16.4 0.0 0.0082 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) ATP-grasp PF02222.22 gi|297526343|ref|YP_003668367.1| - 0.0095 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain NAD_binding_10 PF13460.6 gi|297526343|ref|YP_003668367.1| - 0.015 15.2 0.1 0.024 14.5 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding CPSase_L_D2 PF02786.17 gi|297526343|ref|YP_003668367.1| - 0.015 14.8 0.1 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peripla_BP_4 PF13407.6 gi|297526343|ref|YP_003668367.1| - 0.02 14.5 0.0 0.036 13.6 0.0 1.5 1 1 0 1 1 1 0 Periplasmic binding protein domain Succ_CoA_lig PF13607.6 gi|297526343|ref|YP_003668367.1| - 0.065 13.0 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Dak1 PF02733.17 gi|297526343|ref|YP_003668367.1| - 0.17 10.7 1.0 30 3.3 0.0 3.6 3 1 1 4 4 4 0 Dak1 domain DUF1317 PF07026.11 gi|297526343|ref|YP_003668367.1| - 0.2 11.5 0.6 6.1 6.7 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1317) TetR_C_27 PF17935.1 gi|297526346|ref|YP_003668370.1| - 0.024 14.7 0.4 7.7 6.6 0.1 3.1 1 1 2 3 3 3 0 Tetracyclin repressor-like, C-terminal domain zf-CCCH_7 PF18586.1 gi|297526346|ref|YP_003668370.1| - 0.052 13.9 0.4 0.15 12.4 0.4 1.9 1 1 0 1 1 1 0 Chromatin remodeling factor Mit1 C-terminal Zn finger 1 PfkB PF00294.24 gi|297526347|ref|YP_003668371.1| - 4.8e-36 124.6 0.0 6.2e-36 124.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PNP_UDP_1 PF01048.20 gi|297526348|ref|YP_003668372.1| - 8.9e-40 136.4 0.2 1.1e-39 136.0 0.2 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily DUF4258 PF14076.6 gi|297526349|ref|YP_003668373.1| - 9.4e-10 38.7 0.0 1.3e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) Forkhead PF00250.18 gi|297526349|ref|YP_003668373.1| - 0.015 15.5 0.1 0.032 14.5 0.1 1.5 1 1 0 1 1 1 0 Forkhead domain Metallophos_2 PF12850.7 gi|297526350|ref|YP_003668374.1| - 3.3e-28 98.9 0.0 3.8e-28 98.7 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|297526350|ref|YP_003668374.1| - 3.7e-11 43.9 4.7 9.7e-09 36.0 4.7 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Nfu_N PF08712.11 gi|297526350|ref|YP_003668374.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal HSP20 PF00011.21 gi|297526351|ref|YP_003668375.1| - 2.1e-11 43.9 1.7 8.7e-10 38.7 1.7 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|297526351|ref|YP_003668375.1| - 1.2e-10 40.8 0.1 1.8e-10 40.2 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|297526351|ref|YP_003668375.1| - 0.00036 21.5 0.3 0.00055 20.9 0.3 1.3 1 0 0 1 1 1 1 CS domain DPCD PF14913.6 gi|297526351|ref|YP_003668375.1| - 0.0064 15.9 0.5 0.029 13.7 0.2 1.9 1 1 0 2 2 2 1 DPCD protein family GvpH PF05455.11 gi|297526351|ref|YP_003668375.1| - 0.0073 16.4 0.0 0.01 16.0 0.0 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|297526351|ref|YP_003668375.1| - 0.058 13.8 0.1 0.087 13.2 0.1 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain RibD_C PF01872.17 gi|297526352|ref|YP_003668376.1| - 1.6e-38 132.6 0.0 1.9e-38 132.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Amido_AtzD_TrzD PF09663.10 gi|297526352|ref|YP_003668376.1| - 0.28 10.2 0.0 0.38 9.7 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) UPF0047 PF01894.17 gi|297526353|ref|YP_003668377.1| - 5.7e-34 116.7 0.0 6.6e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 QRPTase_C PF01729.19 gi|297526354|ref|YP_003668378.1| - 2.7e-27 95.6 0.0 3.5e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|297526354|ref|YP_003668378.1| - 5.9e-07 29.9 0.0 1.3e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|297526354|ref|YP_003668378.1| - 5.1e-06 26.4 0.0 9.1e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|297526354|ref|YP_003668378.1| - 0.0022 18.4 0.0 0.29 11.5 0.0 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HAD_2 PF13419.6 gi|297526355|ref|YP_003668379.1| - 8.6e-08 32.5 0.0 1.2e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|297526355|ref|YP_003668379.1| - 0.00012 21.6 0.9 0.038 13.5 0.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2608) Hydrolase PF00702.26 gi|297526355|ref|YP_003668379.1| - 0.0033 17.7 0.0 0.045 14.0 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|297526355|ref|YP_003668379.1| - 0.04 14.3 0.0 0.094 13.1 0.0 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Baculo_FP PF03258.14 gi|297526355|ref|YP_003668379.1| - 0.049 13.8 0.3 0.076 13.2 0.3 1.3 1 0 0 1 1 1 0 Baculovirus FP protein ThiS PF02597.20 gi|297526356|ref|YP_003668380.1| - 2.4e-12 47.3 0.1 2.8e-12 47.1 0.1 1.1 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|297526356|ref|YP_003668380.1| - 0.00028 20.8 1.2 0.00077 19.5 1.2 1.8 1 1 0 1 1 1 1 ThiS-like ubiquitin Ub-Mut7C PF14451.6 gi|297526356|ref|YP_003668380.1| - 0.0046 16.8 0.1 0.019 14.8 0.0 1.8 2 0 0 2 2 2 1 Mut7-C ubiquitin S4 PF01479.25 gi|297526356|ref|YP_003668380.1| - 0.032 14.0 0.2 0.075 12.8 0.3 1.6 2 0 0 2 2 2 0 S4 domain TGS PF02824.21 gi|297526356|ref|YP_003668380.1| - 0.055 13.5 0.1 0.087 12.9 0.1 1.4 1 0 0 1 1 1 0 TGS domain MoaE PF02391.17 gi|297526357|ref|YP_003668381.1| - 3e-27 95.1 0.0 3.5e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 MoaE protein Metallophos_3 PF14582.6 gi|297526359|ref|YP_003668383.1| - 1.8e-09 37.3 0.1 0.00017 21.0 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|297526359|ref|YP_003668383.1| - 0.00018 21.8 0.0 0.00024 21.3 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AP_endonuc_2 PF01261.24 gi|297526360|ref|YP_003668384.1| - 2.1e-09 37.1 0.0 8.3e-09 35.2 0.0 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1194 PF06707.11 gi|297526360|ref|YP_003668384.1| - 0.087 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1194) ResIII PF04851.15 gi|297526361|ref|YP_003668385.1| - 4e-23 82.3 0.4 4.4e-22 78.9 0.1 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|297526361|ref|YP_003668385.1| - 2e-17 63.5 0.0 4.8e-17 62.3 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|297526361|ref|YP_003668385.1| - 3.2e-17 62.9 0.2 8.2e-12 45.5 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|297526361|ref|YP_003668385.1| - 8.8e-08 31.7 0.0 1.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase SWI2_SNF2 PF18766.1 gi|297526361|ref|YP_003668385.1| - 2.4e-05 24.1 0.0 5.3e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase AAA_19 PF13245.6 gi|297526361|ref|YP_003668385.1| - 0.00049 20.4 0.2 0.0013 19.1 0.2 1.7 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|297526361|ref|YP_003668385.1| - 0.0023 17.4 0.0 0.0052 16.3 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein TrmB PF01978.19 gi|297526361|ref|YP_003668385.1| - 0.0032 17.3 0.0 0.0074 16.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Flavi_DEAD PF07652.14 gi|297526361|ref|YP_003668385.1| - 0.0067 16.4 0.3 0.023 14.7 0.3 1.9 1 1 0 1 1 1 1 Flavivirus DEAD domain AAA_22 PF13401.6 gi|297526361|ref|YP_003668385.1| - 0.0076 16.5 0.0 0.029 14.6 0.0 2.0 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.20 gi|297526361|ref|YP_003668385.1| - 0.017 15.0 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|297526361|ref|YP_003668385.1| - 0.02 14.4 0.1 0.099 12.2 0.0 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|297526361|ref|YP_003668385.1| - 0.028 14.1 0.0 0.11 12.1 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|297526361|ref|YP_003668385.1| - 0.032 14.1 0.0 0.11 12.5 0.0 1.8 1 0 0 1 1 1 0 MarR family DUF87 PF01935.17 gi|297526361|ref|YP_003668385.1| - 0.044 13.9 1.1 0.88 9.6 0.1 2.9 3 0 0 3 3 3 0 Helicase HerA, central domain LPD22 PF18834.1 gi|297526361|ref|YP_003668385.1| - 0.045 14.0 0.0 2.4 8.4 0.0 2.8 2 1 1 3 3 3 0 Large polyvalent protein associated domain 22 Sulfolobus_pRN PF05584.11 gi|297526361|ref|YP_003668385.1| - 0.076 13.1 0.0 0.3 11.2 0.0 2.0 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DprA_WH PF17782.1 gi|297526361|ref|YP_003668385.1| - 0.092 12.9 0.3 0.47 10.6 0.0 2.3 2 0 0 2 2 2 0 DprA winged helix domain AAA_11 PF13086.6 gi|297526361|ref|YP_003668385.1| - 0.1 12.3 0.1 12 5.5 0.0 2.3 1 1 0 2 2 2 0 AAA domain Succ_CoA_lig PF13607.6 gi|297526363|ref|YP_003668387.1| - 5e-53 178.6 0.5 4.3e-52 175.6 0.1 2.5 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|297526363|ref|YP_003668387.1| - 5.2e-26 91.4 0.1 1.9e-25 89.6 0.1 2.0 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|297526363|ref|YP_003668387.1| - 7.1e-18 65.1 0.3 5.3e-17 62.3 0.4 2.4 2 0 0 2 2 2 1 CoA binding domain tRNA_bind PF01588.20 gi|297526364|ref|YP_003668388.1| - 8.2e-27 93.2 0.0 9.3e-27 93.0 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain ThiI PF02568.14 gi|297526365|ref|YP_003668389.1| - 4.5e-38 130.8 0.0 8.6e-38 129.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|297526365|ref|YP_003668389.1| - 3e-06 27.4 0.2 7.2e-06 26.2 0.2 1.6 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|297526365|ref|YP_003668389.1| - 2.2e-05 24.1 0.0 0.0012 18.4 0.0 2.4 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|297526365|ref|YP_003668389.1| - 0.00073 18.4 0.0 0.0017 17.2 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase TYW3 PF02676.14 gi|297526366|ref|YP_003668390.1| - 1.4e-29 103.0 0.0 2e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 tRNA_deacylase PF04414.12 gi|297526367|ref|YP_003668391.1| - 1.7e-64 217.1 0.1 2.2e-64 216.8 0.1 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase CARDB PF07705.11 gi|297526368|ref|YP_003668392.1| - 1.6e-05 25.1 0.0 7.5e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 CARDB Wzt_C PF14524.6 gi|297526368|ref|YP_003668392.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Wzt C-terminal domain Phage_holin_3_6 PF07332.11 gi|297526369|ref|YP_003668393.1| - 0.0097 15.9 0.5 0.012 15.7 0.5 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III MadM PF03818.13 gi|297526369|ref|YP_003668393.1| - 0.042 13.7 4.3 0.057 13.3 4.3 1.2 1 0 0 1 1 1 0 Malonate/sodium symporter MadM subunit COX14 PF14880.6 gi|297526369|ref|YP_003668393.1| - 0.11 12.3 0.3 2 8.3 0.0 2.0 2 0 0 2 2 2 0 Cytochrome oxidase c assembly LapA_dom PF06305.11 gi|297526369|ref|YP_003668393.1| - 0.14 12.0 4.2 2.9 7.8 0.8 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF3683 PF12447.8 gi|297526370|ref|YP_003668394.1| - 0.0009 19.4 0.3 0.0024 18.0 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3683) DUF58 PF01882.18 gi|297526371|ref|YP_003668395.1| - 3.2e-24 85.0 0.0 9.7e-24 83.5 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|297526372|ref|YP_003668396.1| - 4.6e-62 207.7 0.0 6.9e-62 207.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|297526372|ref|YP_003668396.1| - 3.1e-22 78.2 0.0 5.4e-22 77.4 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|297526372|ref|YP_003668396.1| - 4.1e-15 56.0 0.0 7.2e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|297526372|ref|YP_003668396.1| - 5.1e-08 33.4 0.0 1.2e-07 32.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|297526372|ref|YP_003668396.1| - 5.2e-07 29.0 0.0 1.8e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|297526372|ref|YP_003668396.1| - 9.3e-07 28.4 0.5 0.0091 15.4 0.0 2.9 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|297526372|ref|YP_003668396.1| - 8.5e-05 22.4 0.1 0.00065 19.5 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|297526372|ref|YP_003668396.1| - 0.0002 21.1 0.0 0.034 13.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|297526372|ref|YP_003668396.1| - 0.0035 17.5 0.0 0.0058 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|297526372|ref|YP_003668396.1| - 0.025 15.0 0.0 0.084 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|297526372|ref|YP_003668396.1| - 0.18 11.3 0.0 0.35 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF4350 PF14258.6 gi|297526373|ref|YP_003668397.1| - 0.013 16.0 0.0 0.027 14.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DUF4129 PF13559.6 gi|297526374|ref|YP_003668398.1| - 2.4e-06 27.7 0.1 3.6e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CLTH PF10607.9 gi|297526374|ref|YP_003668398.1| - 0.0018 18.2 1.8 0.0049 16.8 1.9 1.6 1 1 0 1 1 1 1 CTLH/CRA C-terminal to LisH motif domain MapZ_EC1 PF18041.1 gi|297526374|ref|YP_003668398.1| - 0.077 13.2 3.0 0.18 12.1 3.0 1.5 1 0 0 1 1 1 0 MapZ extracellular domain 1 Tetraspanin PF00335.20 gi|297526374|ref|YP_003668398.1| - 0.27 10.9 2.5 0.31 10.7 0.5 1.8 2 0 0 2 2 2 0 Tetraspanin family BtpA PF03437.15 gi|297526375|ref|YP_003668399.1| - 4.6e-67 226.1 0.0 5.3e-67 225.9 0.0 1.0 1 0 0 1 1 1 1 BtpA family PcrB PF01884.17 gi|297526375|ref|YP_003668399.1| - 5.9e-05 22.6 0.1 0.00011 21.8 0.1 1.6 1 0 0 1 1 1 1 PcrB family Bac_DNA_binding PF00216.21 gi|297526376|ref|YP_003668400.1| - 0.0045 17.2 1.9 0.29 11.3 0.3 2.4 1 1 1 2 2 2 2 Bacterial DNA-binding protein Cnd1 PF12717.7 gi|297526376|ref|YP_003668400.1| - 0.013 15.6 0.1 0.019 15.0 0.1 1.3 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 RapH_N PF18801.1 gi|297526376|ref|YP_003668400.1| - 0.033 14.3 0.2 0.14 12.3 0.0 2.1 2 0 0 2 2 2 0 response regulator aspartate phosphatase H, N terminal CxxCxxCC PF03692.15 gi|297526377|ref|YP_003668401.1| - 2.9e-11 43.9 0.3 4.8e-11 43.2 0.3 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain AFT PF08731.11 gi|297526378|ref|YP_003668402.1| - 0.065 13.6 0.4 0.081 13.3 0.4 1.1 1 0 0 1 1 1 0 Transcription factor AFT OAD_gamma PF04277.13 gi|297526378|ref|YP_003668402.1| - 0.18 12.4 0.1 0.21 12.2 0.1 1.1 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Peptidase_S8 PF00082.22 gi|297526379|ref|YP_003668403.1| - 2.6e-31 109.0 4.1 1.3e-23 83.7 1.2 2.6 2 0 0 2 2 2 2 Subtilase family Big_1 PF02369.16 gi|297526379|ref|YP_003668403.1| - 3e-18 65.6 0.0 0.0074 16.3 0.0 8.6 8 0 0 8 8 8 4 Bacterial Ig-like domain (group 1) Big_3_5 PF16640.5 gi|297526379|ref|YP_003668403.1| - 5.2e-18 65.0 24.4 2.2e-06 27.7 1.0 7.3 7 0 0 7 7 7 5 Bacterial Ig-like domain (group 3) DUF4198 PF10670.9 gi|297526379|ref|YP_003668403.1| - 0.0015 18.9 0.0 0.17 12.3 0.0 3.2 4 0 0 4 4 4 1 Domain of unknown function (DUF4198) Transthyretin PF00576.21 gi|297526379|ref|YP_003668403.1| - 0.017 15.8 0.0 1.3e+02 3.3 0.0 4.6 4 1 1 5 5 5 0 HIUase/Transthyretin family DUF4497 PF14924.6 gi|297526379|ref|YP_003668403.1| - 0.17 12.4 0.0 0.52 10.8 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF4497) CBM65_1 PF18259.1 gi|297526379|ref|YP_003668403.1| - 0.43 10.7 3.5 21 5.3 0.0 4.1 4 0 0 4 4 4 0 Carbohydrate binding module 65 domain 1 LTD PF00932.19 gi|297526379|ref|YP_003668403.1| - 0.51 10.7 6.8 4.6 7.6 0.2 3.9 3 0 0 3 3 3 0 Lamin Tail Domain Carb_kinase PF01256.17 gi|297526380|ref|YP_003668404.1| - 1.7e-51 175.0 0.1 2.6e-51 174.5 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|297526380|ref|YP_003668404.1| - 5.5e-38 130.5 0.0 1.2e-37 129.4 0.0 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|297526380|ref|YP_003668404.1| - 8.7e-06 25.3 0.3 1.8e-05 24.3 0.1 1.6 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Flavoprotein PF02441.19 gi|297526380|ref|YP_003668404.1| - 0.024 14.4 0.0 0.18 11.5 0.0 2.3 2 0 0 2 2 2 0 Flavoprotein PfkB PF00294.24 gi|297526380|ref|YP_003668404.1| - 0.044 13.1 0.0 0.073 12.4 0.0 1.3 1 0 0 1 1 1 0 pfkB family carbohydrate kinase Glyco_tran_WecB PF03808.13 gi|297526380|ref|YP_003668404.1| - 0.069 13.1 0.0 3.3 7.6 0.0 3.1 3 1 0 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family FANCI_HD2 PF14680.6 gi|297526381|ref|YP_003668405.1| - 0.086 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 FANCI helical domain 2 Mucin PF01456.17 gi|297526383|ref|YP_003668407.1| - 1.4e-05 25.1 17.1 3.2e-05 23.9 17.4 1.4 2 0 0 2 2 2 1 Mucin-like glycoprotein Glycophorin_A PF01102.18 gi|297526383|ref|YP_003668407.1| - 0.0076 16.5 5.4 0.017 15.3 5.1 1.9 1 1 0 1 1 1 1 Glycophorin A MGC-24 PF05283.11 gi|297526383|ref|YP_003668407.1| - 0.029 14.8 8.0 0.045 14.2 8.0 1.2 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin AJAP1_PANP_C PF15298.6 gi|297526383|ref|YP_003668407.1| - 0.72 10.0 15.1 1.2 9.3 15.1 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus OppC_N PF12911.7 gi|297526383|ref|YP_003668407.1| - 3.2 7.8 10.5 1.4 9.0 0.1 2.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C TMEM154 PF15102.6 gi|297526383|ref|YP_003668407.1| - 5.8 6.8 12.5 2.5 8.0 9.2 2.0 2 0 0 2 2 2 0 TMEM154 protein family SOG2 PF10428.9 gi|297526383|ref|YP_003668407.1| - 6.8 5.8 11.9 9.3 5.3 11.9 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein MarR_2 PF12802.7 gi|297526384|ref|YP_003668408.1| - 1e-05 25.3 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|297526384|ref|YP_003668408.1| - 9.6e-05 22.1 0.0 0.00021 21.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|297526384|ref|YP_003668408.1| - 9.7e-05 21.9 0.0 0.00025 20.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|297526384|ref|YP_003668408.1| - 0.0011 19.4 0.1 0.0022 18.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|297526384|ref|YP_003668408.1| - 0.0021 17.9 0.2 0.005 16.7 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|297526384|ref|YP_003668408.1| - 0.003 17.5 0.0 0.0063 16.4 0.0 1.5 1 0 0 1 1 1 1 MarR family ODV-E18 PF10717.9 gi|297526384|ref|YP_003668408.1| - 0.034 14.0 0.2 0.034 14.0 0.2 2.1 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Fe_dep_repress PF01325.19 gi|297526384|ref|YP_003668408.1| - 0.051 13.8 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|297526384|ref|YP_003668408.1| - 0.099 12.8 0.1 0.27 11.4 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|297526384|ref|YP_003668408.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4307 PF14155.6 gi|297526384|ref|YP_003668408.1| - 0.17 11.7 0.2 0.39 10.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF4245 PF14030.6 gi|297526384|ref|YP_003668408.1| - 0.17 11.8 0.9 2.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) FeoB_associated PF12669.7 gi|297526384|ref|YP_003668408.1| - 2.4 8.6 4.2 2.2 8.7 0.5 2.6 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DNA_primase_lrg PF04104.14 gi|297526386|ref|YP_003668410.1| - 1.1e-33 116.8 0.3 1.5e-33 116.3 0.3 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit ThrE PF06738.12 gi|297526387|ref|YP_003668411.1| - 1.1e-05 25.0 2.2 1.1e-05 25.0 2.2 2.0 2 0 0 2 2 2 1 Putative threonine/serine exporter PAP2 PF01569.21 gi|297526387|ref|YP_003668411.1| - 9.1e-05 22.2 16.3 0.00074 19.3 16.3 2.4 1 1 0 1 1 1 1 PAP2 superfamily 60KD_IMP PF02096.20 gi|297526387|ref|YP_003668411.1| - 0.17 11.7 10.9 0.2 11.6 2.6 2.1 1 1 1 2 2 2 0 60Kd inner membrane protein Phage_holin_2_3 PF16080.5 gi|297526387|ref|YP_003668411.1| - 1.7 8.5 7.7 0.19 11.5 1.5 2.5 2 0 0 2 2 2 0 Bacteriophage holin family HP1 Methyltr_RsmB-F PF01189.17 gi|297526389|ref|YP_003668413.1| - 4.3e-49 166.9 0.0 6.4e-49 166.3 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|297526389|ref|YP_003668413.1| - 0.00022 21.4 0.0 0.00045 20.4 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltr_RsmF_N PF17125.5 gi|297526389|ref|YP_003668413.1| - 0.017 15.6 0.0 0.08 13.4 0.0 2.3 2 1 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|297526389|ref|YP_003668413.1| - 0.025 14.4 0.0 0.043 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.10 gi|297526389|ref|YP_003668413.1| - 0.19 11.4 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Glyco_trans_1_4 PF13692.6 gi|297526390|ref|YP_003668414.1| - 3.9e-09 37.0 0.0 6.6e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|297526390|ref|YP_003668414.1| - 1e-07 32.1 0.5 2.2e-07 31.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|297526390|ref|YP_003668414.1| - 0.0019 17.8 0.0 0.004 16.7 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|297526390|ref|YP_003668414.1| - 0.09 13.2 0.1 0.31 11.5 0.0 2.0 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Macro PF01661.21 gi|297526391|ref|YP_003668415.1| - 1.7e-25 89.4 0.1 2.2e-25 89.0 0.1 1.2 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.6 gi|297526391|ref|YP_003668415.1| - 6.9e-05 22.3 0.1 0.00072 19.0 0.1 2.1 1 1 0 1 1 1 1 Macro-like domain ThiS PF02597.20 gi|297526392|ref|YP_003668416.1| - 9.9e-11 42.1 0.0 1.1e-10 41.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|297526392|ref|YP_003668416.1| - 0.0053 16.8 1.2 0.011 15.8 0.6 1.8 1 1 1 2 2 2 1 ThiS-like ubiquitin S4 PF01479.25 gi|297526392|ref|YP_003668416.1| - 0.1 12.4 0.2 0.16 11.7 0.2 1.4 1 0 0 1 1 1 0 S4 domain MTHFR PF02219.17 gi|297526393|ref|YP_003668417.1| - 0.055 12.8 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase Meth_synt_2 PF01717.18 gi|297526394|ref|YP_003668418.1| - 1.4e-05 24.5 0.0 2.8e-05 23.5 0.0 1.4 2 0 0 2 2 2 1 Cobalamin-independent synthase, Catalytic domain B12-binding PF02310.19 gi|297526395|ref|YP_003668419.1| - 3e-25 88.6 0.8 4.9e-25 87.9 0.6 1.5 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.17 gi|297526395|ref|YP_003668419.1| - 1.5e-15 57.4 1.1 2.8e-15 56.5 0.2 1.9 2 0 0 2 2 2 1 B12 binding domain NIR_SIR PF01077.22 gi|297526395|ref|YP_003668419.1| - 0.03 13.8 0.1 0.041 13.4 0.1 1.3 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain AF2331-like PF14556.6 gi|297526395|ref|YP_003668419.1| - 0.045 14.3 0.6 3.8 8.2 0.1 2.3 2 0 0 2 2 2 0 AF2331-like Peripla_BP_4 PF13407.6 gi|297526395|ref|YP_003668419.1| - 0.046 13.3 0.5 0.5 9.9 0.1 2.1 1 1 1 2 2 2 0 Periplasmic binding protein domain RACo_C_ter PF14574.6 gi|297526396|ref|YP_003668420.1| - 1.3e-54 185.0 0.0 3.6e-54 183.6 0.0 1.7 2 0 0 2 2 2 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|297526396|ref|YP_003668420.1| - 3.8e-24 85.2 0.1 1.2e-22 80.4 0.1 2.9 2 1 0 2 2 2 1 RACo middle region Fer2 PF00111.27 gi|297526396|ref|YP_003668420.1| - 9.6e-06 25.5 0.4 1.7e-05 24.6 0.4 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pan_kinase PF03309.14 gi|297526396|ref|YP_003668420.1| - 0.063 13.1 0.5 0.72 9.6 0.0 2.6 3 0 0 3 3 3 0 Type III pantothenate kinase MtrH PF02007.18 gi|297526397|ref|YP_003668421.1| - 2.3e-41 141.9 0.0 3e-41 141.5 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MatE PF01554.18 gi|297526398|ref|YP_003668422.1| - 8.6e-56 188.0 29.3 1.9e-30 105.6 8.8 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|297526398|ref|YP_003668422.1| - 7.8e-09 35.7 5.2 7.8e-09 35.7 5.2 4.6 2 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Peptidase_S9 PF00326.21 gi|297526399|ref|YP_003668423.1| - 2.2e-56 190.7 0.0 3e-56 190.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|297526399|ref|YP_003668423.1| - 4.8e-12 46.0 0.2 4.3e-08 33.1 0.2 2.3 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|297526399|ref|YP_003668423.1| - 3.5e-10 39.1 0.0 1.6e-08 33.6 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|297526399|ref|YP_003668423.1| - 5.9e-09 35.9 0.1 2.4e-07 30.7 0.1 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold PD40 PF07676.12 gi|297526399|ref|YP_003668423.1| - 4.4e-08 32.9 5.8 0.47 10.4 0.0 4.7 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|297526399|ref|YP_003668423.1| - 5e-07 28.8 0.1 0.15 10.8 0.0 4.0 3 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.18 gi|297526399|ref|YP_003668423.1| - 2e-05 24.3 0.0 5.8e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|297526399|ref|YP_003668423.1| - 9.2e-05 21.8 0.0 0.027 13.6 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.8 gi|297526399|ref|YP_003668423.1| - 0.00016 21.0 0.0 0.37 10.0 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|297526399|ref|YP_003668423.1| - 0.001 19.7 0.0 0.0018 18.9 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|297526399|ref|YP_003668423.1| - 0.0054 16.6 0.0 1.3 8.8 0.0 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold Kelch_3 PF13415.6 gi|297526399|ref|YP_003668423.1| - 0.034 14.4 0.6 0.38 11.1 0.0 3.0 3 0 0 3 3 3 0 Galactose oxidase, central domain PhoPQ_related PF10142.9 gi|297526399|ref|YP_003668423.1| - 0.084 11.5 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein ANAPC4_WD40 PF12894.7 gi|297526399|ref|YP_003668423.1| - 0.089 13.1 0.0 9.8 6.6 0.0 2.9 4 0 0 4 4 2 0 Anaphase-promoting complex subunit 4 WD40 domain AIM24 PF01987.17 gi|297526400|ref|YP_003668424.1| - 3.8e-57 193.3 0.0 4.3e-57 193.2 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF1634 PF07843.11 gi|297526401|ref|YP_003668425.1| - 0.00058 19.9 19.4 0.022 14.8 11.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1634) TMEM238 PF15125.6 gi|297526401|ref|YP_003668425.1| - 0.0043 17.2 8.1 0.0043 17.2 8.1 2.0 1 1 1 2 2 2 1 TMEM238 protein family DUF423 PF04241.15 gi|297526401|ref|YP_003668425.1| - 0.64 10.3 3.0 0.73 10.1 2.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF423) TauE PF01925.19 gi|297526402|ref|YP_003668426.1| - 4.2e-54 183.7 32.6 4.8e-54 183.5 32.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Apq12 PF12716.7 gi|297526402|ref|YP_003668426.1| - 1.6 8.7 9.0 4.5 7.3 1.5 3.5 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis DUF998 PF06197.13 gi|297526403|ref|YP_003668427.1| - 1.2e-09 38.0 15.6 1.5e-09 37.7 15.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Adeno_E3_14_5 PF04834.12 gi|297526403|ref|YP_003668427.1| - 2.5 8.7 8.8 6.4 7.4 0.4 2.4 2 0 0 2 2 2 0 Early E3 14.5 kDa protein DUF962 PF06127.11 gi|297526403|ref|YP_003668427.1| - 4.3 7.5 9.1 0.6 10.2 4.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF962) Meckelin PF09773.9 gi|297526403|ref|YP_003668427.1| - 9.7 4.1 6.9 11 3.9 6.5 1.3 1 1 0 1 1 1 0 Meckelin (Transmembrane protein 67) TrmO PF01980.16 gi|297526404|ref|YP_003668428.1| - 1.2e-25 90.0 0.0 2.2e-25 89.2 0.0 1.4 1 1 0 1 1 1 1 tRNA-methyltransferase O ABC_tran PF00005.27 gi|297526405|ref|YP_003668429.1| - 8.8e-28 97.5 0.0 1.3e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526405|ref|YP_003668429.1| - 2.1e-13 50.7 0.5 1.2e-05 25.3 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_14 PF13173.6 gi|297526405|ref|YP_003668429.1| - 5.7e-05 23.2 0.6 0.41 10.7 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|297526405|ref|YP_003668429.1| - 0.00011 22.8 0.3 0.00018 22.1 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|297526405|ref|YP_003668429.1| - 0.00021 21.1 0.0 0.0015 18.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|297526405|ref|YP_003668429.1| - 0.00089 18.7 0.1 0.02 14.3 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|297526405|ref|YP_003668429.1| - 0.0023 17.7 0.1 0.0042 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|297526405|ref|YP_003668429.1| - 0.0056 15.4 0.1 0.0079 14.9 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|297526405|ref|YP_003668429.1| - 0.0058 16.4 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain DLIC PF05783.11 gi|297526405|ref|YP_003668429.1| - 0.009 14.9 0.0 0.012 14.5 0.0 1.1 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) ATPase_2 PF01637.18 gi|297526405|ref|YP_003668429.1| - 0.014 15.4 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|297526405|ref|YP_003668429.1| - 0.017 15.0 0.7 0.072 13.0 0.1 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|297526405|ref|YP_003668429.1| - 0.034 14.6 0.2 0.14 12.6 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|297526405|ref|YP_003668429.1| - 0.037 13.1 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|297526405|ref|YP_003668429.1| - 0.048 14.0 0.0 0.083 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|297526405|ref|YP_003668429.1| - 0.061 13.3 0.1 0.36 10.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|297526405|ref|YP_003668429.1| - 0.068 13.1 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|297526405|ref|YP_003668429.1| - 0.12 11.9 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|297526405|ref|YP_003668429.1| - 0.12 11.9 0.2 0.2 11.2 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|297526405|ref|YP_003668429.1| - 0.13 9.8 0.1 0.2 9.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NMD3 PF04981.13 gi|297526407|ref|YP_003668431.1| - 1e-39 136.5 0.0 1.2e-39 136.3 0.0 1.0 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|297526407|ref|YP_003668431.1| - 0.0062 16.5 3.0 3 7.9 3.7 2.9 2 1 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|297526407|ref|YP_003668431.1| - 0.73 9.3 3.8 47 3.6 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|297526407|ref|YP_003668431.1| - 1 9.2 11.3 0.36 10.6 0.4 3.3 3 0 0 3 3 3 0 zinc-ribbon domain GFA PF04828.14 gi|297526407|ref|YP_003668431.1| - 3.5 8.0 5.4 5 7.5 0.0 2.8 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme HTH_AsnC-type PF13404.6 gi|297526408|ref|YP_003668432.1| - 1e-09 38.0 0.1 1.6e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|297526408|ref|YP_003668432.1| - 2.3e-08 33.4 0.3 5.1e-08 32.3 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|297526408|ref|YP_003668432.1| - 0.00017 21.5 0.2 0.00034 20.5 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.11 gi|297526408|ref|YP_003668432.1| - 0.00053 20.0 0.5 0.0013 18.7 0.1 1.8 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_40 PF14493.6 gi|297526408|ref|YP_003668432.1| - 0.012 16.1 0.2 0.035 14.6 0.2 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|297526408|ref|YP_003668432.1| - 0.02 14.6 0.2 0.039 13.7 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain CSN8_PSD8_EIF3K PF10075.9 gi|297526408|ref|YP_003668432.1| - 0.028 14.4 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 CSN8/PSMD8/EIF3K family HTH_IclR PF09339.10 gi|297526408|ref|YP_003668432.1| - 0.03 14.1 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|297526408|ref|YP_003668432.1| - 0.032 14.1 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|297526408|ref|YP_003668432.1| - 0.037 14.5 0.0 0.077 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|297526408|ref|YP_003668432.1| - 0.059 13.5 0.1 0.4 10.8 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|297526408|ref|YP_003668432.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DUF2089 PF09862.9 gi|297526408|ref|YP_003668432.1| - 0.07 13.2 0.1 0.11 12.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) Mga PF05043.13 gi|297526408|ref|YP_003668432.1| - 0.082 13.5 0.0 0.19 12.4 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain MarR PF01047.22 gi|297526408|ref|YP_003668432.1| - 0.088 12.8 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|297526408|ref|YP_003668432.1| - 0.13 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family IF2_N PF04760.15 gi|297526408|ref|YP_003668432.1| - 0.14 12.0 0.1 0.53 10.1 0.0 1.9 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region ADK PF00406.22 gi|297526410|ref|YP_003668434.1| - 2.6e-51 173.7 0.0 3.2e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|297526410|ref|YP_003668434.1| - 5.7e-24 85.1 0.0 1e-23 84.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|297526410|ref|YP_003668434.1| - 1.9e-15 56.5 2.8 3.2e-15 55.8 2.8 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|297526410|ref|YP_003668434.1| - 4.4e-07 30.5 0.0 8.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain TF_Zn_Ribbon PF08271.12 gi|297526410|ref|YP_003668434.1| - 0.00034 20.1 0.7 0.00098 18.6 0.8 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding Hydin_ADK PF17213.3 gi|297526410|ref|YP_003668434.1| - 0.00043 20.6 0.0 0.45 10.8 0.0 2.2 2 0 0 2 2 2 2 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|297526410|ref|YP_003668434.1| - 0.00058 20.0 0.0 0.00089 19.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|297526410|ref|YP_003668434.1| - 0.0084 15.9 0.0 0.017 14.8 0.0 1.4 1 1 0 1 1 1 1 Cytidylate kinase AAA_28 PF13521.6 gi|297526410|ref|YP_003668434.1| - 0.027 14.7 0.0 0.066 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|297526410|ref|YP_003668434.1| - 0.039 14.2 0.0 0.11 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|297526410|ref|YP_003668434.1| - 0.069 12.8 0.0 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.6 gi|297526410|ref|YP_003668434.1| - 0.098 12.4 0.2 0.3 10.8 0.1 1.8 1 1 0 2 2 2 0 AAA domain PAPS_reduct PF01507.19 gi|297526411|ref|YP_003668435.1| - 5.6e-34 117.7 0.0 9.7e-34 116.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|297526411|ref|YP_003668435.1| - 0.0017 17.6 0.0 0.003 16.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Diphthami_syn_2 PF01902.17 gi|297526411|ref|YP_003668435.1| - 0.0085 15.6 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|297526411|ref|YP_003668435.1| - 0.01 15.3 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|297526412|ref|YP_003668436.1| - 7.5e-16 58.4 0.0 4.3e-15 55.9 0.0 2.2 2 1 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|297526412|ref|YP_003668436.1| - 0.00086 18.2 0.0 0.0013 17.6 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|297526412|ref|YP_003668436.1| - 0.0031 17.0 1.9 0.0031 17.0 1.9 3.5 4 0 0 4 4 4 1 RecR protein PAPS_reduct PF01507.19 gi|297526412|ref|YP_003668436.1| - 0.0048 17.0 0.0 0.017 15.2 0.0 1.9 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|297526412|ref|YP_003668436.1| - 0.0048 16.0 0.2 0.016 14.3 0.0 1.8 2 0 0 2 2 2 1 NAD synthase Vps36-NZF-N PF16988.5 gi|297526412|ref|YP_003668436.1| - 0.0054 16.1 3.7 0.51 9.8 0.0 3.5 3 0 0 3 3 3 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain QueC PF06508.13 gi|297526412|ref|YP_003668436.1| - 0.0063 16.0 0.0 0.31 10.5 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC C1_2 PF03107.16 gi|297526412|ref|YP_003668436.1| - 0.03 14.6 3.8 0.32 11.3 0.1 3.1 3 0 0 3 3 3 0 C1 domain Ribosomal_S14 PF00253.21 gi|297526412|ref|YP_003668436.1| - 1.5 8.7 6.7 4.8 7.0 0.1 2.8 3 0 0 3 3 3 0 Ribosomal protein S14p/S29e CitG PF01874.16 gi|297526413|ref|YP_003668437.1| - 1e-57 195.9 0.0 1.2e-57 195.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Peptidase_M4_C PF02868.15 gi|297526413|ref|YP_003668437.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Thermolysin metallopeptidase, alpha-helical domain TPR_19 PF14559.6 gi|297526414|ref|YP_003668438.1| - 1.6e-06 28.5 3.8 0.39 11.3 0.2 4.2 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|297526414|ref|YP_003668438.1| - 2.1e-05 24.8 6.0 0.49 11.1 0.3 4.8 4 0 0 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|297526414|ref|YP_003668438.1| - 4e-05 23.8 1.0 1.3 9.3 0.3 3.8 3 0 0 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 HEPN_STY4199 PF18729.1 gi|297526414|ref|YP_003668438.1| - 0.01 15.0 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 STY4199-like HEPN Type_III_YscG PF09477.10 gi|297526414|ref|YP_003668438.1| - 0.026 14.6 0.4 8.2 6.5 0.1 2.7 2 0 0 2 2 2 0 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_16 PF13432.6 gi|297526414|ref|YP_003668438.1| - 0.031 14.9 0.1 0.031 14.9 0.1 3.7 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|297526414|ref|YP_003668438.1| - 0.046 14.0 0.6 0.23 11.8 0.0 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|297526414|ref|YP_003668438.1| - 0.052 13.8 15.7 1.6 9.1 0.4 5.3 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|297526414|ref|YP_003668438.1| - 0.12 12.6 21.0 0.36 11.0 0.8 6.1 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|297526414|ref|YP_003668438.1| - 0.16 12.9 2.6 49 5.1 0.3 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat DUF1722 PF08349.11 gi|297526414|ref|YP_003668438.1| - 0.23 11.8 8.0 0.67 10.2 0.1 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1722) TPR_12 PF13424.6 gi|297526414|ref|YP_003668438.1| - 1 9.7 16.5 0.35 11.2 0.2 5.0 5 1 1 6 6 5 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|297526414|ref|YP_003668438.1| - 1.5 8.6 4.8 2.3 8.0 0.1 3.3 3 0 0 3 3 3 0 TPR repeat TPR_7 PF13176.6 gi|297526414|ref|YP_003668438.1| - 1.6 8.9 7.2 1 9.6 0.1 4.1 5 0 0 5 5 5 0 Tetratricopeptide repeat Peptidase_M29 PF02073.15 gi|297526415|ref|YP_003668439.1| - 5.3e-108 361.4 0.0 6e-108 361.2 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Herpes_U47 PF05467.11 gi|297526416|ref|YP_003668440.1| - 0.11 10.6 0.8 0.15 10.2 0.8 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein U47 ABC_tran PF00005.27 gi|297526417|ref|YP_003668441.1| - 1.7e-21 77.2 0.0 2.8e-21 76.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526417|ref|YP_003668441.1| - 1.3e-11 44.9 1.1 3.8e-05 23.7 0.6 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526417|ref|YP_003668441.1| - 6.6e-07 29.0 0.0 8.2e-05 22.1 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|297526417|ref|YP_003668441.1| - 0.0003 21.3 0.4 0.00055 20.5 0.4 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|297526417|ref|YP_003668441.1| - 0.00045 19.9 0.1 0.0016 18.2 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|297526417|ref|YP_003668441.1| - 0.00086 19.4 0.0 0.0016 18.5 0.0 1.5 2 0 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|297526417|ref|YP_003668441.1| - 0.0029 17.5 0.3 0.015 15.2 0.2 2.1 3 0 0 3 3 2 1 NACHT domain AAA_15 PF13175.6 gi|297526417|ref|YP_003668441.1| - 0.0041 16.9 0.0 0.0086 15.8 0.1 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|297526417|ref|YP_003668441.1| - 0.0052 16.4 0.0 0.0084 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|297526417|ref|YP_003668441.1| - 0.0082 15.9 0.0 0.03 14.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|297526417|ref|YP_003668441.1| - 0.012 16.0 0.0 0.02 15.3 0.0 1.5 2 0 0 2 2 1 0 AAA ATPase domain cobW PF02492.19 gi|297526417|ref|YP_003668441.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|297526417|ref|YP_003668441.1| - 0.013 16.0 0.2 0.4 11.2 0.1 2.1 1 1 1 2 2 2 0 AAA domain T2SSE PF00437.20 gi|297526417|ref|YP_003668441.1| - 0.016 14.3 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|297526417|ref|YP_003668441.1| - 0.026 14.9 0.0 0.15 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|297526417|ref|YP_003668441.1| - 0.031 14.6 0.1 0.6 10.4 0.3 2.3 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|297526417|ref|YP_003668441.1| - 0.034 13.9 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|297526417|ref|YP_003668441.1| - 0.058 13.3 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|297526417|ref|YP_003668441.1| - 0.063 12.8 0.0 0.14 11.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|297526417|ref|YP_003668441.1| - 0.065 13.4 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|297526417|ref|YP_003668441.1| - 0.066 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|297526417|ref|YP_003668441.1| - 0.074 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|297526417|ref|YP_003668441.1| - 0.084 13.1 0.0 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|297526417|ref|YP_003668441.1| - 0.12 11.5 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.29 gi|297526417|ref|YP_003668441.1| - 0.14 12.6 0.2 0.4 11.1 0.1 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|297526417|ref|YP_003668441.1| - 0.16 10.6 0.0 0.55 8.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|297526417|ref|YP_003668441.1| - 0.17 11.5 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3584 PF12128.8 gi|297526417|ref|YP_003668441.1| - 0.41 8.1 0.6 0.55 7.7 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) QueT PF06177.11 gi|297526418|ref|YP_003668442.1| - 5.6e-32 111.0 17.4 6.4e-32 110.8 17.4 1.0 1 0 0 1 1 1 1 QueT transporter Gal4_dimer PF03902.13 gi|297526420|ref|YP_003668444.1| - 0.066 13.4 1.0 0.18 12.0 1.0 1.8 1 0 0 1 1 1 0 Gal4-like dimerisation domain CCDC53 PF10152.9 gi|297526420|ref|YP_003668444.1| - 0.26 11.7 1.9 0.4 11.1 1.9 1.3 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex FlaC_arch PF05377.11 gi|297526421|ref|YP_003668445.1| - 0.014 15.8 1.3 0.027 14.9 1.3 1.7 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) FliS PF02561.14 gi|297526421|ref|YP_003668445.1| - 0.064 13.5 0.1 0.08 13.2 0.1 1.2 1 0 0 1 1 1 0 Flagellar protein FliS LETM1 PF07766.13 gi|297526421|ref|YP_003668445.1| - 0.1 11.9 0.7 0.13 11.6 0.7 1.1 1 0 0 1 1 1 0 LETM1-like protein SIS PF01380.22 gi|297526422|ref|YP_003668446.1| - 8.3e-18 64.5 0.0 1.8e-17 63.4 0.0 1.6 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|297526422|ref|YP_003668446.1| - 1.3e-11 44.7 2.6 5.1e-08 33.0 0.6 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|297526422|ref|YP_003668446.1| - 0.0014 18.5 1.7 0.43 10.4 0.1 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase 2-Hacid_dh_C PF02826.19 gi|297526422|ref|YP_003668446.1| - 0.11 11.9 1.6 2.8 7.3 0.3 2.2 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Anti-adapt_IraP PF10796.9 gi|297526422|ref|YP_003668446.1| - 0.17 12.5 1.6 1.8 9.1 0.1 2.4 2 0 0 2 2 2 0 Sigma-S stabilisation anti-adaptor protein Radical_SAM PF04055.21 gi|297526423|ref|YP_003668447.1| - 1.3e-12 48.4 0.0 1.4e-11 45.1 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|297526423|ref|YP_003668447.1| - 9.3e-10 38.7 1.8 0.0004 20.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) zf-ZPR1 PF03367.13 gi|297526424|ref|YP_003668448.1| - 6.9e-31 107.3 0.0 8.3e-31 107.0 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|297526424|ref|YP_003668448.1| - 0.0037 16.8 0.8 0.91 9.1 0.2 3.2 3 0 0 3 3 3 1 TFIIB zinc-binding DiS_P_DiS PF06750.13 gi|297526424|ref|YP_003668448.1| - 0.012 15.8 0.1 0.026 14.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain UPF0547 PF10571.9 gi|297526424|ref|YP_003668448.1| - 0.021 14.9 0.7 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rad50_zn_hook PF04423.14 gi|297526424|ref|YP_003668448.1| - 0.04 13.8 0.6 0.22 11.4 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc_ribbon_2 PF13240.6 gi|297526424|ref|YP_003668448.1| - 0.054 13.2 1.1 3.7 7.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|297526424|ref|YP_003668448.1| - 0.067 13.2 0.5 0.16 12.0 0.1 1.8 2 0 0 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|297526424|ref|YP_003668448.1| - 0.079 13.0 0.3 0.2 11.7 0.3 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF983 PF06170.12 gi|297526424|ref|YP_003668448.1| - 0.097 13.1 0.3 5.5 7.5 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF983) OrfB_Zn_ribbon PF07282.11 gi|297526424|ref|YP_003668448.1| - 0.17 11.9 2.3 2.8 7.9 0.1 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2116 PF09889.9 gi|297526424|ref|YP_003668448.1| - 0.2 11.6 0.8 10 6.2 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn-ribbon_8 PF09723.10 gi|297526424|ref|YP_003668448.1| - 0.23 11.6 2.2 4.3 7.5 0.1 2.9 3 0 0 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|297526424|ref|YP_003668448.1| - 1 9.0 2.9 14 5.3 0.1 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Adenine_deam_C PF13382.6 gi|297526425|ref|YP_003668449.1| - 3.6e-62 208.7 0.1 5.5e-62 208.1 0.1 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|297526425|ref|YP_003668449.1| - 2.2e-22 79.8 0.3 6e-21 75.1 0.1 2.4 2 1 0 2 2 2 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|297526425|ref|YP_003668449.1| - 4.1e-09 36.4 0.7 0.00035 20.2 0.2 2.5 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|297526426|ref|YP_003668450.1| - 3.1e-66 224.0 0.1 3.7e-66 223.8 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|297526426|ref|YP_003668450.1| - 2.8e-16 60.1 0.4 5.6e-12 45.9 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Aminotran_5 PF00266.19 gi|297526428|ref|YP_003668452.1| - 2.7e-138 461.0 0.0 3.1e-138 460.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|297526428|ref|YP_003668452.1| - 2.2e-09 37.1 0.0 3.2e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|297526428|ref|YP_003668452.1| - 5.2e-09 35.1 0.5 2.3e-08 33.0 0.2 1.9 1 1 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|297526428|ref|YP_003668452.1| - 3.7e-06 26.4 0.0 5.1e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|297526428|ref|YP_003668452.1| - 0.0012 17.9 0.0 0.0026 16.8 0.0 1.6 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase PalH PF08733.10 gi|297526428|ref|YP_003668452.1| - 0.013 14.5 0.1 0.031 13.3 0.0 1.6 2 0 0 2 2 2 0 PalH/RIM21 DUF296 PF03479.15 gi|297526429|ref|YP_003668453.1| - 1.8e-22 79.8 0.2 2.1e-22 79.5 0.2 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Polysacc_deac_1 PF01522.21 gi|297526430|ref|YP_003668454.1| - 3.5e-19 68.9 0.0 7.4e-19 67.9 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|297526430|ref|YP_003668454.1| - 1.2e-09 38.2 0.1 4.5e-09 36.3 0.1 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Methyltr_RsmB-F PF01189.17 gi|297526431|ref|YP_003668455.1| - 2.6e-64 216.6 0.0 3.9e-64 216.0 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|297526431|ref|YP_003668455.1| - 3.9e-08 33.7 0.0 8.4e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|297526431|ref|YP_003668455.1| - 7.5e-08 32.7 0.0 1.3e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|297526431|ref|YP_003668455.1| - 3.9e-07 30.0 0.0 6.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|297526431|ref|YP_003668455.1| - 0.027 13.6 0.0 0.047 12.8 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin NusB PF01029.18 gi|297526431|ref|YP_003668455.1| - 0.055 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 NusB family Methyltransf_25 PF13649.6 gi|297526431|ref|YP_003668455.1| - 0.12 13.1 0.1 0.47 11.2 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain EamA PF00892.20 gi|297526432|ref|YP_003668456.1| - 1.4e-19 70.6 22.0 1.6e-19 70.5 22.0 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|297526432|ref|YP_003668456.1| - 0.00051 19.2 4.1 0.00051 19.2 4.1 1.5 1 1 0 1 1 1 1 Magnesium transporter NIPA Mem_trans PF03547.18 gi|297526433|ref|YP_003668457.1| - 6.3e-10 38.0 27.3 2.9e-05 22.7 10.2 2.1 1 1 1 2 2 2 2 Membrane transport protein PA14 PF07691.12 gi|297526434|ref|YP_003668458.1| - 2.3e-15 56.7 0.0 3e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|297526434|ref|YP_003668458.1| - 0.0015 18.9 0.1 0.0024 18.3 0.1 1.3 1 0 0 1 1 1 1 GLEYA domain EPF PF17181.4 gi|297526435|ref|YP_003668459.1| - 0.074 13.1 0.4 0.2 11.7 0.2 1.8 2 0 0 2 2 2 0 Epidermal patterning factor proteins RNA12 PF10443.9 gi|297526436|ref|YP_003668460.1| - 4.8e-05 22.3 0.1 0.00085 18.2 0.1 2.0 2 0 0 2 2 2 2 RNA12 protein HD PF01966.22 gi|297526436|ref|YP_003668460.1| - 0.00031 21.0 0.1 0.00055 20.2 0.1 1.4 1 0 0 1 1 1 1 HD domain Q_salvage PF10343.9 gi|297526438|ref|YP_003668462.1| - 0.0053 16.4 0.0 0.019 14.6 0.0 1.9 2 0 0 2 2 2 1 Potential Queuosine, Q, salvage protein family Methyltransf_11 PF08241.12 gi|297526440|ref|YP_003668464.1| - 2.1e-05 25.1 0.0 0.00019 22.0 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297526440|ref|YP_003668464.1| - 2.6e-05 24.9 0.0 5.6e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|297526440|ref|YP_003668464.1| - 3.7e-05 23.3 0.0 5.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|297526440|ref|YP_003668464.1| - 0.00015 21.2 0.0 0.0004 19.8 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|297526440|ref|YP_003668464.1| - 0.0019 17.9 0.0 0.0027 17.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|297526440|ref|YP_003668464.1| - 0.0033 17.2 0.0 0.006 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|297526440|ref|YP_003668464.1| - 0.0039 16.8 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|297526440|ref|YP_003668464.1| - 0.0099 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|297526440|ref|YP_003668464.1| - 0.073 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|297526440|ref|YP_003668464.1| - 0.093 12.4 0.0 7.4 6.2 0.0 2.6 3 0 0 3 3 3 0 DNA methylase Methyltransf_23 PF13489.6 gi|297526440|ref|YP_003668464.1| - 0.12 12.2 0.0 0.41 10.5 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_30 PF05430.11 gi|297526440|ref|YP_003668464.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase RHH_1 PF01402.21 gi|297526441|ref|YP_003668465.1| - 8.3e-09 35.1 0.3 2.1e-08 33.8 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|297526441|ref|YP_003668465.1| - 4.2e-06 26.6 0.0 7.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.11 gi|297526441|ref|YP_003668465.1| - 0.00013 22.1 0.1 0.00034 20.7 0.0 1.8 2 0 0 2 2 2 1 NikR C terminal nickel binding domain HicB_lk_antitox PF15919.5 gi|297526441|ref|YP_003668465.1| - 0.083 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system RhoGAP PF00620.27 gi|297526441|ref|YP_003668465.1| - 0.13 12.1 0.0 0.48 10.2 0.0 1.7 1 1 1 2 2 2 0 RhoGAP domain RHH_5 PF07878.11 gi|297526441|ref|YP_003668465.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DUF2610 PF11020.8 gi|297526441|ref|YP_003668465.1| - 0.15 11.9 0.0 0.4 10.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2610) ABC-3 PF00950.17 gi|297526442|ref|YP_003668466.1| - 2.4e-19 69.8 38.1 3.3e-19 69.4 38.1 1.2 1 0 0 1 1 1 1 ABC 3 transport family ZnuA PF01297.17 gi|297526443|ref|YP_003668467.1| - 6.7e-16 58.5 0.3 1.1e-15 57.8 0.3 1.3 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic PucR PF07905.11 gi|297526443|ref|YP_003668467.1| - 0.022 15.0 0.1 0.041 14.2 0.1 1.5 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family ABC_tran PF00005.27 gi|297526444|ref|YP_003668468.1| - 2.4e-28 99.3 0.0 3.4e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526444|ref|YP_003668468.1| - 2.3e-10 40.8 0.0 0.00078 19.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526444|ref|YP_003668468.1| - 6.3e-05 22.5 0.0 0.24 10.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|297526444|ref|YP_003668468.1| - 0.00022 20.9 0.0 0.00031 20.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|297526444|ref|YP_003668468.1| - 0.00041 20.9 0.2 0.00065 20.3 0.2 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|297526444|ref|YP_003668468.1| - 0.0033 17.3 0.7 0.13 12.1 0.2 2.3 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 gi|297526444|ref|YP_003668468.1| - 0.0075 16.7 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|297526444|ref|YP_003668468.1| - 0.0099 15.6 0.0 0.94 9.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|297526444|ref|YP_003668468.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|297526444|ref|YP_003668468.1| - 0.014 14.5 0.1 0.022 13.8 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|297526444|ref|YP_003668468.1| - 0.031 14.7 0.0 0.15 12.5 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|297526444|ref|YP_003668468.1| - 0.039 13.5 0.1 0.073 12.6 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|297526444|ref|YP_003668468.1| - 0.047 13.0 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|297526444|ref|YP_003668468.1| - 0.062 13.6 0.1 0.13 12.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|297526444|ref|YP_003668468.1| - 0.076 13.0 0.0 3.4 7.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|297526444|ref|YP_003668468.1| - 0.084 10.4 0.3 0.11 10.0 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.22 gi|297526444|ref|YP_003668468.1| - 0.098 11.8 0.2 0.21 10.8 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.6 gi|297526444|ref|YP_003668468.1| - 0.2 11.9 0.0 2.4 8.4 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF711 PF05167.12 gi|297526445|ref|YP_003668469.1| - 3.2e-31 108.7 0.0 7.8e-26 90.9 0.0 2.0 2 0 0 2 2 2 2 Uncharacterised ACR (DUF711) YtxH PF12732.7 gi|297526446|ref|YP_003668470.1| - 0.074 13.6 0.0 0.12 13.0 0.0 1.3 1 0 0 1 1 1 0 YtxH-like protein DUF4372 PF14294.6 gi|297526447|ref|YP_003668471.1| - 0.12 12.5 0.0 6 7.1 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4372) SMC_N PF02463.19 gi|297526447|ref|YP_003668471.1| - 0.2 11.0 0.0 0.34 10.3 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain HTH_45 PF14947.6 gi|297526450|ref|YP_003668474.1| - 1.3e-06 28.2 3.0 3e-06 27.1 3.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|297526450|ref|YP_003668474.1| - 1.6e-06 27.9 0.5 3.7e-06 26.8 0.2 1.8 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain LexA_DNA_bind PF01726.16 gi|297526450|ref|YP_003668474.1| - 0.0017 18.1 0.0 0.0034 17.1 0.0 1.5 1 1 0 1 1 1 1 LexA DNA binding domain DUF4364 PF14277.6 gi|297526450|ref|YP_003668474.1| - 0.0026 17.5 0.2 0.0052 16.5 0.1 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) Penicillinase_R PF03965.16 gi|297526450|ref|YP_003668474.1| - 0.0027 18.0 0.0 0.005 17.2 0.0 1.6 1 1 0 1 1 1 1 Penicillinase repressor HxlR PF01638.17 gi|297526450|ref|YP_003668474.1| - 0.0058 16.5 0.1 0.022 14.6 0.0 1.9 1 1 1 2 2 2 1 HxlR-like helix-turn-helix Mrr_N PF14338.6 gi|297526450|ref|YP_003668474.1| - 0.0095 16.1 0.1 0.033 14.3 0.1 1.8 1 1 1 2 2 2 1 Mrr N-terminal domain FUR PF01475.19 gi|297526450|ref|YP_003668474.1| - 0.026 14.6 0.1 0.032 14.4 0.1 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.14 gi|297526450|ref|YP_003668474.1| - 0.029 14.3 0.0 0.083 12.9 0.0 1.8 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|297526450|ref|YP_003668474.1| - 0.036 12.5 0.0 0.038 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TrmB PF01978.19 gi|297526450|ref|YP_003668474.1| - 0.041 13.8 0.0 0.083 12.8 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Ribosomal_S19e PF01090.19 gi|297526450|ref|YP_003668474.1| - 0.043 13.5 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e N6_Mtase PF02384.16 gi|297526451|ref|YP_003668475.1| - 2.7e-10 40.0 2.6 3.6e-06 26.5 2.7 2.2 1 1 1 2 2 2 2 N-6 DNA Methylase Eco57I PF07669.11 gi|297526451|ref|YP_003668475.1| - 4e-05 24.1 5.4 0.00022 21.7 2.3 3.1 2 1 0 2 2 2 1 Eco57I restriction-modification methylase Methyltransf_23 PF13489.6 gi|297526451|ref|YP_003668475.1| - 0.00039 20.3 0.0 0.00068 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF2684 PF10885.8 gi|297526451|ref|YP_003668475.1| - 0.058 13.5 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2684) RE_R_Pab1 PF09522.10 gi|297526452|ref|YP_003668476.1| - 1.9e-14 53.8 0.1 9.2e-14 51.6 0.1 2.1 1 1 2 3 3 3 1 R.Pab1 restriction endonuclease Ald_Xan_dh_C2 PF02738.18 gi|297526453|ref|YP_003668477.1| - 2.1e-178 594.3 0.0 2.5e-178 594.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|297526453|ref|YP_003668477.1| - 4.2e-27 94.7 0.3 8.2e-27 93.7 0.3 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|297526454|ref|YP_003668478.1| - 2.4e-24 85.1 0.0 2.4e-24 85.1 0.0 1.5 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|297526454|ref|YP_003668478.1| - 4e-08 33.1 1.2 8e-08 32.1 0.2 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|297526454|ref|YP_003668478.1| - 0.00012 22.0 1.0 0.00016 21.7 0.3 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|297526454|ref|YP_003668478.1| - 0.011 15.8 0.3 0.14 12.3 0.3 2.4 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|297526455|ref|YP_003668479.1| - 1.8e-25 89.6 0.0 2.9e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|297526455|ref|YP_003668479.1| - 2.1e-12 47.1 0.0 3.6e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain DUF2996 PF11210.8 gi|297526455|ref|YP_003668479.1| - 0.052 14.0 0.0 0.19 12.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2996) PALP PF00291.25 gi|297526456|ref|YP_003668480.1| - 2.4e-67 227.5 0.0 2.7e-67 227.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABM PF03992.16 gi|297526456|ref|YP_003668480.1| - 0.19 11.9 0.0 0.36 11.0 0.0 1.4 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase VCBS PF13517.6 gi|297526457|ref|YP_003668481.1| - 6.6e-22 77.9 35.5 1.1e-05 25.9 4.1 6.4 2 2 4 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|297526457|ref|YP_003668481.1| - 4.4e-15 55.5 39.4 0.025 14.7 0.0 8.0 8 0 0 8 8 8 6 FG-GAP repeat PQQ PF01011.21 gi|297526457|ref|YP_003668481.1| - 4.6e-12 45.3 7.1 2.2e-05 24.2 0.1 5.4 5 0 0 5 5 5 3 PQQ enzyme repeat BBS2_Mid PF14783.6 gi|297526457|ref|YP_003668481.1| - 3.6e-08 33.4 10.0 0.021 14.8 0.0 7.2 6 2 0 8 8 8 2 Ciliary BBSome complex subunit 2, middle region PQQ_3 PF13570.6 gi|297526457|ref|YP_003668481.1| - 6.8e-07 29.6 16.7 0.012 16.1 0.9 6.2 6 1 0 6 6 6 2 PQQ-like domain PQQ_2 PF13360.6 gi|297526457|ref|YP_003668481.1| - 1.3e-06 28.2 0.1 0.035 13.7 0.0 3.0 1 1 2 3 3 3 2 PQQ-like domain Itfg2 PF15907.5 gi|297526457|ref|YP_003668481.1| - 5.8e-06 25.6 15.8 0.94 8.5 0.0 6.1 3 1 3 6 6 6 3 Integrin-alpha FG-GAP repeat-containing protein 2 Tachylectin PF14517.6 gi|297526457|ref|YP_003668481.1| - 0.023 14.3 2.0 0.069 12.7 2.0 1.7 1 1 0 1 1 1 0 Tachylectin Atrophin-1 PF03154.15 gi|297526457|ref|YP_003668481.1| - 0.17 10.2 2.3 0.22 9.8 2.3 1.0 1 0 0 1 1 1 0 Atrophin-1 family Dicty_REP PF05086.12 gi|297526457|ref|YP_003668481.1| - 0.31 9.0 4.7 0.42 8.5 4.7 1.1 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Mucin PF01456.17 gi|297526457|ref|YP_003668481.1| - 0.43 10.6 27.2 0.77 9.7 27.2 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein TMEM154 PF15102.6 gi|297526457|ref|YP_003668481.1| - 0.53 10.2 6.5 1 9.2 6.5 1.5 1 0 0 1 1 1 0 TMEM154 protein family PliI PF16743.5 gi|297526457|ref|YP_003668481.1| - 1.4 8.7 8.8 3.3 7.5 0.1 4.6 4 2 2 6 6 6 0 Periplasmic lysozyme inhibitor of I-type lysozyme AJAP1_PANP_C PF15298.6 gi|297526457|ref|YP_003668481.1| - 2.3 8.4 13.8 3.7 7.7 13.8 1.2 1 0 0 1 1 1 0 AJAP1/PANP C-terminus ABC_tran PF00005.27 gi|297526458|ref|YP_003668482.1| - 2.6e-30 105.7 0.0 4.3e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526458|ref|YP_003668482.1| - 4.7e-11 43.0 4.1 3.2e-05 23.9 0.1 2.9 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|297526458|ref|YP_003668482.1| - 0.00015 22.3 0.1 0.00033 21.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|297526458|ref|YP_003668482.1| - 0.00039 20.1 0.0 0.0008 19.1 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|297526458|ref|YP_003668482.1| - 0.0036 17.1 0.1 0.0089 15.8 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|297526458|ref|YP_003668482.1| - 0.0037 17.7 0.3 0.02 15.3 0.1 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|297526458|ref|YP_003668482.1| - 0.011 15.5 0.3 0.02 14.6 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|297526458|ref|YP_003668482.1| - 0.012 15.1 0.4 0.93 8.9 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|297526458|ref|YP_003668482.1| - 0.014 15.0 0.0 0.033 13.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|297526458|ref|YP_003668482.1| - 0.021 14.1 0.0 0.041 13.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|297526458|ref|YP_003668482.1| - 0.024 14.6 0.2 0.061 13.3 0.2 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|297526458|ref|YP_003668482.1| - 0.037 14.4 0.1 0.089 13.2 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|297526458|ref|YP_003668482.1| - 0.12 12.2 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 MukB N-terminal DUF4162 PF13732.6 gi|297526458|ref|YP_003668482.1| - 0.12 13.1 0.0 0.29 11.9 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_14 PF13173.6 gi|297526458|ref|YP_003668482.1| - 0.13 12.3 0.1 1.3 9.1 0.0 2.5 1 1 2 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|297526458|ref|YP_003668482.1| - 0.18 12.1 0.4 0.52 10.6 0.4 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|297526458|ref|YP_003668482.1| - 0.18 11.7 0.6 0.72 9.8 0.0 2.2 2 1 0 2 2 2 0 NACHT domain ABC2_membrane PF01061.24 gi|297526459|ref|YP_003668483.1| - 1.4e-14 54.0 32.1 1.4e-14 54.0 32.1 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|297526459|ref|YP_003668483.1| - 1.4e-07 31.0 40.3 1.4e-07 31.0 40.3 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|297526459|ref|YP_003668483.1| - 0.0021 17.4 29.8 0.0049 16.2 29.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|297526459|ref|YP_003668483.1| - 0.0031 17.1 42.8 0.036 13.6 42.8 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4931 PF16285.5 gi|297526459|ref|YP_003668483.1| - 0.14 11.5 0.1 0.21 10.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4931) Fer4_15 PF13459.6 gi|297526460|ref|YP_003668484.1| - 1.8e-17 63.8 2.8 2.1e-17 63.6 2.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|297526460|ref|YP_003668484.1| - 3.7e-16 59.4 1.4 4.9e-16 59.0 1.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|297526460|ref|YP_003668484.1| - 6.8e-05 22.9 1.6 0.00032 20.7 1.7 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|297526460|ref|YP_003668484.1| - 0.015 15.1 11.7 0.039 13.8 1.2 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297526460|ref|YP_003668484.1| - 0.026 15.1 4.4 0.52 10.9 0.9 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF2114 PF09887.9 gi|297526460|ref|YP_003668484.1| - 0.028 12.9 0.0 0.028 12.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) Fer4_8 PF13183.6 gi|297526460|ref|YP_003668484.1| - 0.045 14.2 0.3 0.087 13.3 0.3 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297526460|ref|YP_003668484.1| - 0.047 13.8 0.7 0.047 13.8 0.7 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297526460|ref|YP_003668484.1| - 0.05 13.7 4.3 0.36 11.0 4.4 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297526460|ref|YP_003668484.1| - 0.083 13.0 2.2 0.083 13.0 2.2 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|297526460|ref|YP_003668484.1| - 0.16 12.9 2.3 9.9 7.2 0.2 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain HTH_20 PF12840.7 gi|297526461|ref|YP_003668485.1| - 4.9e-08 32.9 0.0 1.1e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|297526461|ref|YP_003668485.1| - 0.0068 15.9 0.0 0.016 14.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|297526461|ref|YP_003668485.1| - 0.015 15.2 0.1 0.041 13.9 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.17 gi|297526461|ref|YP_003668485.1| - 0.16 11.8 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Nre_N PF04894.12 gi|297526462|ref|YP_003668486.1| - 3.7e-110 368.0 0.0 6.4e-110 367.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|297526462|ref|YP_003668486.1| - 5.6e-37 126.0 0.0 8.6e-37 125.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Radical_SAM PF04055.21 gi|297526463|ref|YP_003668487.1| - 3.7e-07 30.7 0.1 1e-06 29.3 0.0 1.6 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|297526463|ref|YP_003668487.1| - 1.7 8.3 7.4 12 5.6 6.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) SBP_bac_5 PF00496.22 gi|297526465|ref|YP_003668489.1| - 2.2e-66 224.4 6.8 2.2e-66 224.4 6.8 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Mucin PF01456.17 gi|297526465|ref|YP_003668489.1| - 7.2 6.6 24.4 12 5.8 24.4 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein BPD_transp_1 PF00528.22 gi|297526466|ref|YP_003668490.1| - 9e-44 149.4 13.8 9e-44 149.4 13.8 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PAP2_3 PF14378.6 gi|297526466|ref|YP_003668490.1| - 0.022 14.5 1.0 0.022 14.5 1.0 3.0 2 1 0 3 3 3 0 PAP2 superfamily BPD_transp_1 PF00528.22 gi|297526467|ref|YP_003668491.1| - 1.3e-32 113.1 10.5 1.3e-32 113.1 10.5 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|297526467|ref|YP_003668491.1| - 2.2e-08 34.0 3.2 2.2e-08 34.0 3.2 4.0 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|297526468|ref|YP_003668492.1| - 1.5e-24 87.1 0.0 2.2e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297526468|ref|YP_003668492.1| - 2.5e-21 76.0 0.4 4.6e-21 75.1 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|297526468|ref|YP_003668492.1| - 1.3e-07 31.8 0.0 1.5e-05 25.0 0.0 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526468|ref|YP_003668492.1| - 0.0031 17.0 0.2 0.043 13.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|297526468|ref|YP_003668492.1| - 0.0043 17.5 0.1 0.88 10.0 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|297526468|ref|YP_003668492.1| - 0.0059 16.3 0.1 0.0081 15.8 0.1 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.6 gi|297526468|ref|YP_003668492.1| - 0.013 15.8 0.9 0.078 13.2 0.9 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|297526468|ref|YP_003668492.1| - 0.052 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Herpes_ori_bp PF02399.15 gi|297526468|ref|YP_003668492.1| - 0.078 11.0 0.1 0.1 10.7 0.1 1.1 1 0 0 1 1 1 0 Origin of replication binding protein AAA_5 PF07728.14 gi|297526468|ref|YP_003668492.1| - 0.09 12.8 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|297526468|ref|YP_003668492.1| - 0.13 11.9 0.0 13 5.3 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|297526468|ref|YP_003668492.1| - 0.15 11.4 0.0 0.87 8.9 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|297526468|ref|YP_003668492.1| - 0.17 11.3 0.1 0.34 10.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region GETHR PF05671.11 gi|297526468|ref|YP_003668492.1| - 0.34 10.3 1.9 0.66 9.4 1.9 1.4 1 0 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) ABC_tran PF00005.27 gi|297526469|ref|YP_003668493.1| - 1e-33 116.8 0.0 1.3e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297526469|ref|YP_003668493.1| - 1e-20 74.0 0.6 2e-20 73.1 0.6 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|297526469|ref|YP_003668493.1| - 5.3e-09 36.3 1.1 5.1e-07 29.8 0.1 2.3 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526469|ref|YP_003668493.1| - 3.1e-06 26.8 0.1 1.4e-05 24.7 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|297526469|ref|YP_003668493.1| - 5.2e-05 23.7 0.1 0.0008 19.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|297526469|ref|YP_003668493.1| - 6.1e-05 22.9 0.0 9.4e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|297526469|ref|YP_003668493.1| - 9.7e-05 22.7 0.8 0.00052 20.3 0.8 1.9 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|297526469|ref|YP_003668493.1| - 0.0044 16.5 0.3 0.31 10.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein Mg_chelatase PF01078.21 gi|297526469|ref|YP_003668493.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|297526469|ref|YP_003668493.1| - 0.023 14.7 0.3 0.28 11.2 0.2 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|297526469|ref|YP_003668493.1| - 0.025 15.0 1.8 0.1 13.0 1.8 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|297526469|ref|YP_003668493.1| - 0.04 13.5 0.1 6 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|297526469|ref|YP_003668493.1| - 0.045 14.0 0.0 0.56 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|297526469|ref|YP_003668493.1| - 0.067 11.8 0.0 0.27 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|297526469|ref|YP_003668493.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain tRNA_lig_kinase PF08303.11 gi|297526469|ref|YP_003668493.1| - 0.14 12.2 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 tRNA ligase kinase domain ATP-synt_ab PF00006.25 gi|297526469|ref|YP_003668493.1| - 0.16 11.6 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|297526469|ref|YP_003668493.1| - 0.18 11.5 0.1 0.33 10.7 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|297526469|ref|YP_003668493.1| - 0.2 11.0 0.6 3.1 7.1 0.2 2.3 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.22 gi|297526469|ref|YP_003668493.1| - 0.25 10.5 0.2 0.46 9.6 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain PYC_OADA PF02436.18 gi|297526470|ref|YP_003668494.1| - 3.4e-54 183.6 0.0 5.9e-54 182.8 0.0 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|297526470|ref|YP_003668494.1| - 3e-41 141.8 0.0 4.1e-41 141.3 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|297526470|ref|YP_003668494.1| - 5.2e-20 71.1 5.7 1.2e-19 69.9 5.7 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|297526470|ref|YP_003668494.1| - 2.9e-11 43.0 1.7 1.2e-05 25.1 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|297526470|ref|YP_003668494.1| - 2.8e-06 27.2 1.6 1.8e-05 24.6 0.3 2.8 3 1 1 4 4 4 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|297526470|ref|YP_003668494.1| - 9.7e-06 26.2 0.3 0.0078 16.9 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|297526470|ref|YP_003668494.1| - 7.3e-05 22.1 0.1 0.083 12.1 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|297526470|ref|YP_003668494.1| - 0.00052 19.9 1.0 0.0011 18.9 0.5 1.8 2 0 0 2 2 2 1 Glycine cleavage H-protein ADH_zinc_N PF00107.26 gi|297526470|ref|YP_003668494.1| - 0.0012 18.8 0.1 0.095 12.7 0.0 2.9 2 1 1 3 3 3 1 Zinc-binding dehydrogenase Peptidase_M23 PF01551.22 gi|297526470|ref|YP_003668494.1| - 0.044 14.0 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Peptidase family M23 PTS_EIIA_1 PF00358.20 gi|297526470|ref|YP_003668494.1| - 0.056 13.2 0.3 1.3 8.8 0.1 2.5 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PYNP_C PF07831.13 gi|297526470|ref|YP_003668494.1| - 0.062 13.0 3.2 1.9 8.2 0.1 2.5 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain YqfD PF06898.11 gi|297526470|ref|YP_003668494.1| - 0.17 10.7 5.0 9.3 5.0 1.8 3.0 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD Phosphodiest PF01663.22 gi|297526471|ref|YP_003668495.1| - 2.6e-56 191.8 0.4 3.2e-56 191.4 0.4 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|297526471|ref|YP_003668495.1| - 0.00096 18.6 0.0 0.0014 18.1 0.0 1.4 1 1 0 1 1 1 1 Sulfatase DUF229 PF02995.17 gi|297526471|ref|YP_003668495.1| - 0.039 12.6 0.0 0.052 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) APS_kinase PF01583.20 gi|297526472|ref|YP_003668496.1| - 9.9e-61 204.2 0.0 1.2e-60 204.0 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase KTI12 PF08433.10 gi|297526472|ref|YP_003668496.1| - 4.5e-09 36.2 0.0 5e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|297526472|ref|YP_003668496.1| - 3.2e-08 33.9 0.0 3.9e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|297526472|ref|YP_003668496.1| - 3e-07 31.0 0.0 4.6e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|297526472|ref|YP_003668496.1| - 8.9e-06 24.9 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|297526472|ref|YP_003668496.1| - 1.6e-05 24.9 0.0 4.8e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 NTPase CbiA PF01656.23 gi|297526472|ref|YP_003668496.1| - 1.6e-05 25.0 0.0 1.8e-05 24.8 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|297526472|ref|YP_003668496.1| - 7.5e-05 22.4 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_31 PF13614.6 gi|297526472|ref|YP_003668496.1| - 0.00017 21.6 0.0 0.00024 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|297526472|ref|YP_003668496.1| - 0.00038 20.4 0.0 0.00064 19.6 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 gi|297526472|ref|YP_003668496.1| - 0.00042 20.8 0.0 0.0011 19.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|297526472|ref|YP_003668496.1| - 0.00045 20.1 0.0 0.00071 19.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|297526472|ref|YP_003668496.1| - 0.00047 19.9 0.0 0.00055 19.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|297526472|ref|YP_003668496.1| - 0.0015 18.1 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|297526472|ref|YP_003668496.1| - 0.0049 17.3 0.0 0.0053 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|297526472|ref|YP_003668496.1| - 0.0056 17.1 0.0 0.0079 16.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|297526472|ref|YP_003668496.1| - 0.0059 16.5 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Thymidylate_kin PF02223.17 gi|297526472|ref|YP_003668496.1| - 0.0088 15.7 0.0 0.046 13.4 0.0 1.9 2 0 0 2 2 2 1 Thymidylate kinase MipZ PF09140.11 gi|297526472|ref|YP_003668496.1| - 0.016 14.5 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ ParA PF10609.9 gi|297526472|ref|YP_003668496.1| - 0.022 14.2 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase RNA_helicase PF00910.22 gi|297526472|ref|YP_003668496.1| - 0.026 14.9 0.0 0.041 14.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.21 gi|297526472|ref|YP_003668496.1| - 0.029 13.8 0.0 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|297526472|ref|YP_003668496.1| - 0.03 13.9 0.2 0.044 13.4 0.2 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|297526472|ref|YP_003668496.1| - 0.037 13.2 0.0 0.062 12.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.6 gi|297526472|ref|YP_003668496.1| - 0.037 14.3 0.0 0.056 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|297526472|ref|YP_003668496.1| - 0.048 13.7 0.0 0.095 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|297526472|ref|YP_003668496.1| - 0.048 12.9 0.0 0.08 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|297526472|ref|YP_003668496.1| - 0.057 13.1 0.0 0.057 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|297526472|ref|YP_003668496.1| - 0.059 13.7 0.0 0.13 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain LytR_C PF13399.6 gi|297526472|ref|YP_003668496.1| - 0.065 14.2 0.0 0.11 13.5 0.0 1.5 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator LpxK PF02606.14 gi|297526472|ref|YP_003668496.1| - 0.15 11.1 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase CheR_N PF03705.15 gi|297526473|ref|YP_003668497.1| - 4.5e-05 23.1 0.0 8.3e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain POTRA PF07244.15 gi|297526473|ref|YP_003668497.1| - 0.005 17.4 0.2 0.025 15.1 0.1 1.8 1 1 1 2 2 2 1 Surface antigen variable number repeat RelB_N PF18506.1 gi|297526473|ref|YP_003668497.1| - 0.0072 16.1 0.4 0.082 12.7 0.0 2.2 2 0 0 2 2 2 1 RelB Antitoxin alpha helical domain Imm74 PF15603.6 gi|297526473|ref|YP_003668497.1| - 0.039 14.1 0.3 0.045 13.9 0.3 1.2 1 1 0 1 1 1 0 Immunity protein 74 HMA PF00403.26 gi|297526473|ref|YP_003668497.1| - 0.16 12.4 1.0 13 6.3 0.1 2.3 2 1 0 2 2 2 0 Heavy-metal-associated domain ATP-sulfurylase PF01747.17 gi|297526474|ref|YP_003668498.1| - 4.8e-87 290.9 0.1 6.2e-87 290.5 0.1 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|297526474|ref|YP_003668498.1| - 4.5e-57 192.2 0.0 7.4e-57 191.5 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain RHH_1 PF01402.21 gi|297526475|ref|YP_003668499.1| - 0.0034 17.3 0.1 0.038 13.9 0.0 2.2 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family Trans_coact PF16805.5 gi|297526475|ref|YP_003668499.1| - 0.02 15.0 1.3 0.14 12.2 0.1 2.1 2 0 0 2 2 2 0 Phage late-transcription coactivator Na_sulph_symp PF00939.19 gi|297526476|ref|YP_003668500.1| - 1e-33 117.2 35.6 1.4e-33 116.7 35.6 1.1 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|297526476|ref|YP_003668500.1| - 2.5e-27 95.9 41.1 1.8e-17 63.5 14.7 2.3 2 0 0 2 2 2 2 Citrate transporter Metallophos_2 PF12850.7 gi|297526477|ref|YP_003668501.1| - 5.7e-24 85.2 0.0 7.3e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|297526477|ref|YP_003668501.1| - 7.9e-13 49.4 3.1 2.4e-12 47.8 3.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|297526477|ref|YP_003668501.1| - 0.00092 17.6 0.6 0.0051 15.2 0.2 1.9 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase tRNA-synt_2 PF00152.20 gi|297526478|ref|YP_003668502.1| - 5.2e-49 167.0 0.0 6.6e-49 166.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) PhosphMutase PF10143.9 gi|297526479|ref|YP_003668503.1| - 4.7e-49 166.5 0.0 6.9e-49 166.0 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|297526479|ref|YP_003668503.1| - 9.8e-29 100.4 0.0 1.2e-28 100.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|297526479|ref|YP_003668503.1| - 0.0027 17.3 0.0 0.021 14.4 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 gi|297526479|ref|YP_003668503.1| - 0.033 13.2 0.0 0.053 12.5 0.0 1.2 1 0 0 1 1 1 0 Alkaline phosphatase PglZ PF08665.12 gi|297526479|ref|YP_003668503.1| - 0.13 12.4 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 PglZ domain DeoC PF01791.9 gi|297526480|ref|YP_003668504.1| - 5.8e-14 52.3 0.5 7.1e-14 52.0 0.5 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|297526480|ref|YP_003668504.1| - 7.1e-06 25.4 3.0 1.2e-05 24.7 2.0 1.7 1 1 1 2 2 2 1 Dihydroorotate dehydrogenase FumaraseC_C PF10415.9 gi|297526480|ref|YP_003668504.1| - 0.055 13.9 0.1 0.25 11.8 0.1 2.2 2 0 0 2 2 2 0 Fumarase C C-terminus CRISPR_Cas6 PF10040.9 gi|297526482|ref|YP_003668506.1| - 2e-13 50.8 0.0 4.3e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|297526482|ref|YP_003668506.1| - 1.1e-08 35.3 0.0 2.1e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Cas6 N-terminal domain PIN PF01850.21 gi|297526484|ref|YP_003668508.1| - 3.9e-06 27.4 0.8 5e-06 27.0 0.8 1.1 1 0 0 1 1 1 1 PIN domain AAA_lid_9 PF17871.1 gi|297526484|ref|YP_003668508.1| - 0.1 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 AAA lid domain MazE_antitoxin PF04014.18 gi|297526485|ref|YP_003668509.1| - 2.6e-08 33.6 3.0 5.4e-08 32.6 3.0 1.6 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Ribosomal_L18 PF17135.4 gi|297526485|ref|YP_003668509.1| - 0.39 10.1 2.1 0.49 9.8 2.1 1.1 1 0 0 1 1 1 0 Ribosomal protein 60S L18 and 50S L18e Swm2 PF17083.5 gi|297526487|ref|YP_003668511.1| - 0.05 13.6 0.4 0.099 12.6 0.2 1.7 1 1 1 2 2 2 0 Nucleolar protein Swm2 Phe_tRNA-synt_N PF02912.18 gi|297526487|ref|YP_003668511.1| - 0.1 12.5 0.8 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain Pkinase PF00069.25 gi|297526489|ref|YP_003668513.1| - 1.2e-45 156.0 0.0 2.1e-45 155.2 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|297526489|ref|YP_003668513.1| - 8.8e-28 97.3 0.0 1.4e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 gi|297526489|ref|YP_003668513.1| - 3.9e-06 27.0 0.0 6.7e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family ABC1 PF03109.16 gi|297526489|ref|YP_003668513.1| - 0.0027 17.9 0.2 0.59 10.3 0.0 2.5 2 0 0 2 2 2 1 ABC1 family RIO1 PF01163.22 gi|297526489|ref|YP_003668513.1| - 0.0076 15.9 0.0 0.049 13.2 0.0 2.3 1 1 1 2 2 2 1 RIO1 family Kinase-like PF14531.6 gi|297526489|ref|YP_003668513.1| - 0.0099 15.2 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Kinase-like AAA PF00004.29 gi|297526490|ref|YP_003668514.1| - 1.6e-16 61.0 0.3 3.2e-15 56.7 0.0 2.7 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|297526490|ref|YP_003668514.1| - 0.00015 22.1 0.0 0.00032 21.0 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.6 gi|297526490|ref|YP_003668514.1| - 0.00025 21.2 0.0 0.00073 19.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain Myosin_head PF00063.21 gi|297526490|ref|YP_003668514.1| - 0.00033 19.0 0.0 0.0005 18.4 0.0 1.2 1 0 0 1 1 1 1 Myosin head (motor domain) AAA_22 PF13401.6 gi|297526490|ref|YP_003668514.1| - 0.00048 20.4 0.5 0.0025 18.1 0.0 2.4 3 1 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|297526490|ref|YP_003668514.1| - 0.0011 18.6 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|297526490|ref|YP_003668514.1| - 0.0013 18.8 1.9 0.024 14.7 0.0 3.1 4 0 0 4 4 4 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|297526490|ref|YP_003668514.1| - 0.0016 18.2 0.1 2.4 7.9 0.0 2.6 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|297526490|ref|YP_003668514.1| - 0.0024 18.3 0.1 0.0064 16.9 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|297526490|ref|YP_003668514.1| - 0.0028 17.4 0.0 0.006 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain MIT PF04212.18 gi|297526490|ref|YP_003668514.1| - 0.0044 17.0 0.4 0.0044 17.0 0.4 1.9 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain CLP1_P PF16575.5 gi|297526490|ref|YP_003668514.1| - 0.0055 16.5 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ATPase PF06745.13 gi|297526490|ref|YP_003668514.1| - 0.0064 15.9 0.1 0.027 13.8 0.0 2.1 2 0 0 2 2 2 1 KaiC AAA_18 PF13238.6 gi|297526490|ref|YP_003668514.1| - 0.0075 16.8 0.4 0.026 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|297526490|ref|YP_003668514.1| - 0.01 16.3 0.0 0.026 15.0 0.0 1.7 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|297526490|ref|YP_003668514.1| - 0.015 15.2 0.1 0.039 13.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.16 gi|297526490|ref|YP_003668514.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_7 PF12775.7 gi|297526490|ref|YP_003668514.1| - 0.027 14.0 0.0 0.053 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|297526490|ref|YP_003668514.1| - 0.032 14.0 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein PPV_E1_C PF00519.17 gi|297526490|ref|YP_003668514.1| - 0.047 12.5 0.0 0.11 11.3 0.0 1.6 2 0 0 2 2 2 0 Papillomavirus helicase SRP54 PF00448.22 gi|297526490|ref|YP_003668514.1| - 0.051 13.2 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Sigma54_activat PF00158.26 gi|297526490|ref|YP_003668514.1| - 0.067 12.9 0.0 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|297526490|ref|YP_003668514.1| - 0.071 12.8 0.1 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|297526490|ref|YP_003668514.1| - 0.077 12.0 0.0 0.26 10.3 0.0 2.0 1 1 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|297526490|ref|YP_003668514.1| - 0.088 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CbiA PF01656.23 gi|297526490|ref|YP_003668514.1| - 0.094 12.8 0.0 0.24 11.4 0.0 1.9 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain RsgA_GTPase PF03193.16 gi|297526490|ref|YP_003668514.1| - 0.13 12.2 0.0 0.38 10.7 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|297526490|ref|YP_003668514.1| - 4.5 7.7 6.6 2 8.9 0.1 2.6 3 1 0 3 3 2 0 AAA domain Herpes_UL21 PF03252.13 gi|297526491|ref|YP_003668515.1| - 0.081 11.7 0.2 0.1 11.3 0.2 1.1 1 0 0 1 1 1 0 Herpesvirus UL21 INSIG PF07281.12 gi|297526491|ref|YP_003668515.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Insulin-induced protein (INSIG) GLTSCR1 PF15249.6 gi|297526491|ref|YP_003668515.1| - 0.35 11.3 4.6 2.5 8.6 0.1 2.5 2 1 0 2 2 2 0 Conserved region of unknown function on GLTSCR protein ATP-synt_ab PF00006.25 gi|297526492|ref|YP_003668516.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF3134 PF11332.8 gi|297526492|ref|YP_003668516.1| - 0.6 10.5 0.1 0.6 10.5 0.1 2.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3134) mRNA_decap_C PF16741.5 gi|297526493|ref|YP_003668517.1| - 0.0038 16.5 0.1 0.0088 15.3 0.1 1.6 1 0 0 1 1 1 1 mRNA-decapping enzyme C-terminus RasGAP_C PF03836.15 gi|297526495|ref|YP_003668519.1| - 0.00016 21.8 0.5 0.0015 18.7 0.3 2.4 3 0 0 3 3 3 1 RasGAP C-terminus ATP-synt_D PF01813.17 gi|297526495|ref|YP_003668519.1| - 0.00025 20.9 0.3 0.068 13.0 0.0 2.2 2 0 0 2 2 2 2 ATP synthase subunit D LZ3wCH PF18517.1 gi|297526495|ref|YP_003668519.1| - 0.062 13.4 0.6 7.3 6.8 0.1 3.1 3 1 0 3 3 3 0 Leucine zipper with capping helix domain NleF_casp_inhib PF16809.5 gi|297526495|ref|YP_003668519.1| - 0.079 12.9 5.5 0.15 11.9 1.0 3.0 2 1 0 3 3 3 0 NleF caspase inhibitor PPP1R26_N PF15740.5 gi|297526495|ref|YP_003668519.1| - 0.15 10.7 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein phosphatase 1 regulatory subunit 26 N-terminus Mt_ATP-synt_D PF05873.12 gi|297526495|ref|YP_003668519.1| - 0.33 10.8 2.7 4.7 7.0 0.2 2.6 1 1 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) DUF4200 PF13863.6 gi|297526495|ref|YP_003668519.1| - 0.41 11.0 2.6 0.54 10.7 0.2 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) LMP PF04778.12 gi|297526496|ref|YP_003668520.1| - 0.012 15.5 10.0 0.038 13.9 10.0 1.8 1 0 0 1 1 1 0 LMP repeated region Bacillus_HBL PF05791.11 gi|297526496|ref|YP_003668520.1| - 0.15 11.9 3.3 0.25 11.1 2.0 2.0 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF4777 PF16007.5 gi|297526496|ref|YP_003668520.1| - 0.2 12.0 1.5 6.4 7.1 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) ERM PF00769.19 gi|297526496|ref|YP_003668520.1| - 0.33 10.7 35.9 0.3 10.9 27.5 2.5 2 0 0 2 2 2 0 Ezrin/radixin/moesin family CotJB PF12652.7 gi|297526496|ref|YP_003668520.1| - 0.56 10.5 1.9 1.7 8.9 0.0 2.7 2 1 0 2 2 2 0 CotJB protein Y2_Tnp PF04986.13 gi|297526496|ref|YP_003668520.1| - 2.2 8.3 5.1 0.77 9.8 0.2 2.5 1 1 1 2 2 2 0 Putative transposase ExsD PF16806.5 gi|297526496|ref|YP_003668520.1| - 3.9 7.3 11.8 1.9 8.3 7.9 2.1 2 0 0 2 2 2 0 Antiactivator protein ExsD Pkinase PF00069.25 gi|297526497|ref|YP_003668521.1| - 2.7e-47 161.4 0.0 4.5e-47 160.6 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|297526497|ref|YP_003668521.1| - 4.7e-32 111.3 0.0 8.2e-32 110.5 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase PQQ_3 PF13570.6 gi|297526497|ref|YP_003668521.1| - 1.2e-31 108.4 33.9 6.5e-07 29.7 0.5 7.5 7 0 0 7 7 7 7 PQQ-like domain PQQ PF01011.21 gi|297526497|ref|YP_003668521.1| - 5.9e-29 98.6 22.1 1.7e-06 27.6 0.1 8.0 8 0 0 8 8 7 4 PQQ enzyme repeat WD40 PF00400.32 gi|297526497|ref|YP_003668521.1| - 3.9e-20 71.8 19.7 0.0014 19.4 0.0 7.4 7 0 0 7 7 7 6 WD domain, G-beta repeat PQQ_2 PF13360.6 gi|297526497|ref|YP_003668521.1| - 3.5e-19 69.3 3.7 1e-09 38.3 0.4 2.4 1 1 1 2 2 2 2 PQQ-like domain BBS2_Mid PF14783.6 gi|297526497|ref|YP_003668521.1| - 3.9e-07 30.1 0.0 0.16 12.1 0.0 4.3 1 1 2 3 3 3 2 Ciliary BBSome complex subunit 2, middle region CPSF_A PF03178.15 gi|297526497|ref|YP_003668521.1| - 2.3e-05 23.8 0.0 0.0022 17.3 0.0 2.4 2 0 0 2 2 2 1 CPSF A subunit region RAB3GAP2_N PF14655.6 gi|297526497|ref|YP_003668521.1| - 0.00055 19.3 0.4 2.6 7.2 0.0 3.8 2 2 3 5 5 5 2 Rab3 GTPase-activating protein regulatory subunit N-terminus APH PF01636.23 gi|297526497|ref|YP_003668521.1| - 0.00074 19.5 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Phosphotransferase enzyme family SGL PF08450.12 gi|297526497|ref|YP_003668521.1| - 0.00083 19.0 0.3 0.64 9.5 0.0 3.1 2 1 0 3 3 3 1 SMP-30/Gluconolactonase/LRE-like region DUF4988 PF16378.5 gi|297526497|ref|YP_003668521.1| - 0.0075 16.0 2.8 10 5.7 0.0 4.3 3 1 0 3 3 3 0 Domain of unknown function WD40_like PF17005.5 gi|297526497|ref|YP_003668521.1| - 0.0094 15.3 11.4 5.7 6.2 0.7 4.6 3 1 1 4 4 4 1 WD40-like domain Kinase-like PF14531.6 gi|297526497|ref|YP_003668521.1| - 0.011 15.1 0.0 0.037 13.3 0.0 1.9 1 1 0 1 1 1 0 Kinase-like DUF4859 PF16151.5 gi|297526497|ref|YP_003668521.1| - 0.013 15.3 6.0 0.23 11.4 0.2 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4859) DsbC_N PF10411.9 gi|297526497|ref|YP_003668521.1| - 0.041 13.3 1.8 68 3.0 0.1 5.1 5 0 0 5 5 5 0 Disulfide bond isomerase protein N-terminus VID27 PF08553.10 gi|297526497|ref|YP_003668521.1| - 0.057 12.5 1.1 10 5.0 0.0 3.8 1 1 4 5 5 5 0 VID27 C-terminal WD40-like domain FixG_C PF11614.8 gi|297526497|ref|YP_003668521.1| - 0.06 13.6 0.1 0.14 12.3 0.1 1.6 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase ABC1 PF03109.16 gi|297526497|ref|YP_003668521.1| - 0.097 12.8 0.7 0.59 10.3 0.0 2.4 2 0 0 2 2 2 0 ABC1 family RAP PF08373.10 gi|297526497|ref|YP_003668521.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 RAP domain Ge1_WD40 PF16529.5 gi|297526497|ref|YP_003668521.1| - 0.16 10.9 5.9 8.7 5.2 0.0 4.0 2 2 2 4 4 4 0 WD40 region of Ge1, enhancer of mRNA-decapping protein DUF4363 PF14276.6 gi|297526497|ref|YP_003668521.1| - 0.21 11.7 0.0 0.21 11.7 0.0 3.2 4 1 1 5 5 3 0 Domain of unknown function (DUF4363) Lipoprotein_15 PF03640.15 gi|297526497|ref|YP_003668521.1| - 0.3 10.7 1.6 2.5 7.7 0.0 3.4 5 1 1 6 6 6 0 Secreted repeat of unknown function Hrs_helical PF12210.8 gi|297526497|ref|YP_003668521.1| - 1 10.0 4.5 1.8 9.1 0.6 2.4 2 0 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate CW_binding_1 PF01473.20 gi|297526497|ref|YP_003668521.1| - 6.3 7.3 7.2 1.5e+02 2.9 0.0 4.7 5 0 0 5 5 5 0 Putative cell wall binding repeat WW PF00397.26 gi|297526497|ref|YP_003668521.1| - 7.7 6.7 9.9 27 5.0 0.1 4.2 4 0 0 4 4 4 0 WW domain WD40 PF00400.32 gi|297526498|ref|YP_003668522.1| - 0.011 16.6 0.9 0.05 14.5 0.1 2.0 1 1 1 2 2 2 0 WD domain, G-beta repeat Kelch_6 PF13964.6 gi|297526498|ref|YP_003668522.1| - 0.15 12.4 0.2 0.27 11.6 0.1 1.6 1 1 1 2 2 2 0 Kelch motif LMBR1 PF04791.16 gi|297526499|ref|YP_003668523.1| - 1.2e-06 27.7 0.0 0.025 13.5 0.0 2.3 1 1 1 2 2 2 1 LMBR1-like membrane protein DUF2935 PF11155.8 gi|297526499|ref|YP_003668523.1| - 0.00027 21.3 6.0 0.0053 17.1 1.5 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF2935) Baculo_PEP_C PF04513.12 gi|297526499|ref|YP_003668523.1| - 0.046 13.8 5.8 0.52 10.3 1.7 3.2 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus FtsK_SpoIIIE PF01580.18 gi|297526499|ref|YP_003668523.1| - 0.25 10.7 4.4 0.15 11.4 1.1 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF373 PF04123.13 gi|297526499|ref|YP_003668523.1| - 0.46 9.9 5.3 0.72 9.2 5.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Prominin PF05478.11 gi|297526499|ref|YP_003668523.1| - 1.1 7.2 19.1 0.28 9.1 0.1 3.2 2 1 1 3 3 3 0 Prominin DUF883 PF05957.13 gi|297526499|ref|YP_003668523.1| - 2.5 8.8 13.4 2.9 8.6 1.3 3.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4407 PF14362.6 gi|297526499|ref|YP_003668523.1| - 3.4 7.0 20.2 12 5.1 19.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Hormone_1 PF00103.20 gi|297526499|ref|YP_003668523.1| - 4.4 7.0 9.2 1.7 8.3 2.4 3.1 2 1 1 3 3 3 0 Somatotropin hormone family FapA PF03961.13 gi|297526500|ref|YP_003668524.1| - 0.0063 15.2 8.6 0.0063 15.2 8.6 2.0 1 1 1 2 2 2 1 Flagellar Assembly Protein A DUF3494 PF11999.8 gi|297526500|ref|YP_003668524.1| - 0.098 12.3 0.6 0.79 9.3 0.2 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3494) Bactofilin PF04519.13 gi|297526500|ref|YP_003668524.1| - 0.31 11.4 13.3 2.1 8.7 13.0 2.5 1 1 1 2 2 2 0 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|297526500|ref|YP_003668524.1| - 0.62 9.9 31.3 0.16 11.7 2.5 5.3 6 1 0 6 6 6 0 Bacterial transferase hexapeptide (six repeats) RecR PF02132.15 gi|297526501|ref|YP_003668525.1| - 0.021 14.4 0.7 0.045 13.3 0.7 1.6 1 0 0 1 1 1 0 RecR protein zf-ribbon_3 PF13248.6 gi|297526501|ref|YP_003668525.1| - 0.13 11.8 7.5 3.2 7.3 7.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|297526501|ref|YP_003668525.1| - 0.66 9.9 2.9 1.2 9.1 2.9 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PTS_IIA PF02255.16 gi|297526502|ref|YP_003668526.1| - 0.049 13.7 0.4 0.31 11.1 0.1 2.0 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit SusD-like_2 PF12771.7 gi|297526502|ref|YP_003668526.1| - 0.065 12.2 0.1 0.072 12.0 0.1 1.1 1 0 0 1 1 1 0 Starch-binding associating with outer membrane DUF4398 PF14346.6 gi|297526502|ref|YP_003668526.1| - 0.38 11.4 3.5 1.7 9.3 0.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Pkinase PF00069.25 gi|297526503|ref|YP_003668527.1| - 2.6e-46 158.1 0.0 9e-46 156.4 0.0 1.9 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|297526503|ref|YP_003668527.1| - 1.8e-28 99.5 0.0 3.9e-28 98.4 0.0 1.5 1 0 0 1 1 1 1 Protein tyrosine kinase HEPN PF05168.14 gi|297526503|ref|YP_003668527.1| - 0.0002 21.4 1.9 0.0002 21.4 1.9 3.1 3 1 0 3 3 3 1 HEPN domain APH PF01636.23 gi|297526503|ref|YP_003668527.1| - 0.0024 17.8 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family TPR_1 PF00515.28 gi|297526503|ref|YP_003668527.1| - 0.073 12.9 3.7 12 6.0 1.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat SRP68 PF16969.5 gi|297526503|ref|YP_003668527.1| - 0.27 10.2 10.4 0.6 9.0 0.1 2.6 3 0 0 3 3 3 0 RNA-binding signal recognition particle 68 Sec2p PF06428.11 gi|297526503|ref|YP_003668527.1| - 0.42 10.6 6.0 3.6 7.6 0.1 3.1 3 0 0 3 3 3 0 GDP/GTP exchange factor Sec2p TPR_2 PF07719.17 gi|297526503|ref|YP_003668527.1| - 0.51 10.6 5.9 15 6.0 0.1 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|297526503|ref|YP_003668527.1| - 4.5 7.7 11.8 2.3 8.6 0.1 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF4363 PF14276.6 gi|297526503|ref|YP_003668527.1| - 4.9 7.3 18.0 2 8.6 1.5 4.7 3 2 3 6 6 6 0 Domain of unknown function (DUF4363) DUF2564 PF10819.8 gi|297526503|ref|YP_003668527.1| - 9.5 6.7 6.3 9 6.8 0.1 3.0 3 1 2 5 5 5 0 Protein of unknown function (DUF2564) TPR_16 PF13432.6 gi|297526504|ref|YP_003668528.1| - 0.03 15.0 5.8 0.51 11.0 0.1 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|297526504|ref|YP_003668528.1| - 0.077 13.2 6.5 0.54 10.5 0.1 3.8 3 1 1 4 4 4 0 Tetratricopeptide repeat AROS PF15684.5 gi|297526504|ref|YP_003668528.1| - 0.092 13.3 0.0 0.13 12.8 0.0 1.3 1 1 0 1 1 1 0 Active regulator of SIRT1, or 40S ribosomal protein S19-binding 1 SHNi-TPR PF10516.9 gi|297526504|ref|YP_003668528.1| - 0.78 9.2 5.9 1.8 8.1 0.2 3.3 3 1 0 3 3 3 0 SHNi-TPR KH_9 PF17904.1 gi|297526506|ref|YP_003668530.1| - 0.13 12.6 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 FMRP KH0 domain CcdA PF07362.12 gi|297526508|ref|YP_003668532.1| - 0.00044 20.6 1.0 0.0077 16.6 0.3 2.0 1 1 1 2 2 2 1 Post-segregation antitoxin CcdA Ribosomal_L9_C PF03948.14 gi|297526508|ref|YP_003668532.1| - 0.0017 18.8 0.4 0.019 15.4 0.1 2.0 1 1 1 2 2 2 1 Ribosomal protein L9, C-terminal domain PSK_trans_fac PF07704.11 gi|297526508|ref|YP_003668532.1| - 0.0049 17.6 2.2 0.0065 17.2 2.2 1.3 1 0 0 1 1 1 1 Rv0623-like transcription factor G-gamma PF00631.22 gi|297526508|ref|YP_003668532.1| - 0.014 15.3 1.0 0.56 10.2 0.0 2.1 1 1 1 2 2 2 0 GGL domain Fer2_BFD PF04324.15 gi|297526508|ref|YP_003668532.1| - 0.38 11.1 1.8 1.5 9.2 0.2 2.2 2 0 0 2 2 2 0 BFD-like [2Fe-2S] binding domain RHH_1 PF01402.21 gi|297526508|ref|YP_003668532.1| - 8.1 6.5 14.4 0.082 12.9 2.1 3.2 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF2797 PF10977.8 gi|297526509|ref|YP_003668533.1| - 1.2e-06 28.6 0.4 2.2e-06 27.7 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) Csm1_B PF18211.1 gi|297526511|ref|YP_003668535.1| - 9.9e-14 51.0 0.9 1.3e-12 47.4 0.1 3.0 2 0 0 2 2 2 1 Csm1 subunit domain B HD PF01966.22 gi|297526511|ref|YP_003668535.1| - 2.3e-08 34.3 0.9 8.8e-08 32.4 0.1 2.4 2 0 0 2 2 2 1 HD domain DUF5063 PF16702.5 gi|297526511|ref|YP_003668535.1| - 0.035 14.5 0.4 0.14 12.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5063) DUF2408 PF10303.9 gi|297526511|ref|YP_003668535.1| - 0.088 13.4 0.9 20 5.7 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2408) RAMPs PF03787.15 gi|297526512|ref|YP_003668536.1| - 4.9e-07 30.0 0.1 8.4e-07 29.2 0.1 1.6 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|297526513|ref|YP_003668537.1| - 8.4e-05 22.7 0.3 0.00021 21.4 0.3 1.7 1 1 0 1 1 1 1 RAMP superfamily Csm4_C PF17953.1 gi|297526513|ref|YP_003668537.1| - 0.028 14.3 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 CRISPR Csm4 C-terminal domain RAMPs PF03787.15 gi|297526514|ref|YP_003668538.1| - 8.8e-13 48.8 0.7 1.3e-12 48.3 0.7 1.2 1 0 0 1 1 1 1 RAMP superfamily Polbeta PF18765.1 gi|297526514|ref|YP_003668538.1| - 0.039 14.0 0.2 0.53 10.4 0.0 2.2 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase TcdB_N PF12918.7 gi|297526515|ref|YP_003668539.1| - 0.025 14.8 2.5 0.43 10.9 1.2 2.5 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain NUMOD1 PF07453.13 gi|297526516|ref|YP_003668540.1| - 0.026 14.8 0.7 0.11 12.8 0.3 2.3 2 0 0 2 2 2 0 NUMOD1 domain Peripla_BP_7 PF18610.1 gi|297526516|ref|YP_003668540.1| - 0.49 10.6 2.7 8.3 6.6 0.0 3.0 3 0 0 3 3 3 0 Periplasmic binding protein domain Thioredoxin PF00085.20 gi|297526517|ref|YP_003668541.1| - 0.0025 17.8 0.4 0.0067 16.4 0.4 1.8 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|297526517|ref|YP_003668541.1| - 0.083 13.0 0.2 10 6.3 0.1 2.2 2 0 0 2 2 2 0 Thioredoxin MoCF_biosynth PF00994.24 gi|297526518|ref|YP_003668542.1| - 8.1e-29 100.1 0.0 9.7e-29 99.9 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain MutL PF13941.6 gi|297526518|ref|YP_003668542.1| - 0.0034 16.0 0.0 0.0044 15.7 0.0 1.0 1 0 0 1 1 1 1 MutL protein HTH_34 PF13601.6 gi|297526518|ref|YP_003668542.1| - 0.082 13.1 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain S-AdoMet_synt_N PF00438.20 gi|297526518|ref|YP_003668542.1| - 0.17 12.6 0.1 0.29 11.8 0.1 1.3 1 0 0 1 1 1 0 S-adenosylmethionine synthetase, N-terminal domain ABC_tran PF00005.27 gi|297526519|ref|YP_003668543.1| - 8.5e-33 113.8 0.0 1.4e-32 113.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|297526519|ref|YP_003668543.1| - 1.3e-15 57.9 0.0 4.3e-15 56.3 0.0 2.0 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|297526519|ref|YP_003668543.1| - 2.4e-06 27.6 0.0 8.1e-06 25.9 0.0 2.0 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.6 gi|297526519|ref|YP_003668543.1| - 2.5e-06 27.5 0.1 0.013 15.4 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|297526519|ref|YP_003668543.1| - 0.00065 20.2 0.0 0.0024 18.4 0.0 2.0 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|297526519|ref|YP_003668543.1| - 0.0009 19.7 0.0 0.022 15.2 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TOBE PF03459.17 gi|297526519|ref|YP_003668543.1| - 0.0011 19.3 0.0 0.0039 17.5 0.0 1.9 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.6 gi|297526519|ref|YP_003668543.1| - 0.0019 18.6 0.0 0.0044 17.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|297526519|ref|YP_003668543.1| - 0.0021 18.0 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|297526519|ref|YP_003668543.1| - 0.0051 17.1 0.5 0.016 15.5 0.5 1.9 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|297526519|ref|YP_003668543.1| - 0.018 15.4 0.0 0.17 12.3 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|297526519|ref|YP_003668543.1| - 0.02 15.2 0.1 0.044 14.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|297526519|ref|YP_003668543.1| - 0.022 14.7 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|297526519|ref|YP_003668543.1| - 0.032 14.0 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|297526519|ref|YP_003668543.1| - 0.065 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Ribosomal_S17 PF00366.20 gi|297526519|ref|YP_003668543.1| - 0.073 13.2 0.1 0.23 11.6 0.1 1.8 1 0 0 1 1 1 0 Ribosomal protein S17 DLIC PF05783.11 gi|297526519|ref|YP_003668543.1| - 0.11 11.3 0.0 0.4 9.5 0.0 1.8 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|297526519|ref|YP_003668543.1| - 0.13 12.9 0.0 0.32 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|297526519|ref|YP_003668543.1| - 0.13 12.1 0.1 0.32 10.9 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_23 PF13476.6 gi|297526519|ref|YP_003668543.1| - 0.18 12.3 0.3 0.18 12.3 0.3 1.7 2 0 0 2 2 1 0 AAA domain BPD_transp_1 PF00528.22 gi|297526520|ref|YP_003668544.1| - 2.9e-19 69.5 21.7 2.9e-19 69.5 21.7 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|297526521|ref|YP_003668545.1| - 1.1e-11 44.8 19.4 1.1e-11 44.8 19.4 2.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|297526522|ref|YP_003668546.1| - 9.6e-39 133.9 0.3 9.6e-39 133.9 0.3 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|297526522|ref|YP_003668546.1| - 3.4e-34 119.2 5.7 5e-34 118.7 5.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|297526522|ref|YP_003668546.1| - 1.1e-07 31.6 0.2 2.3e-06 27.2 0.1 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|297526522|ref|YP_003668546.1| - 0.0053 16.5 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Wzz PF02706.15 gi|297526522|ref|YP_003668546.1| - 0.097 13.0 1.1 0.5 10.7 0.4 2.5 2 0 0 2 2 2 0 Chain length determinant protein Inos-1-P_synth PF01658.17 gi|297526523|ref|YP_003668547.1| - 1.2e-21 77.0 0.0 3.9e-21 75.3 0.0 1.9 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|297526523|ref|YP_003668547.1| - 6e-05 22.6 0.0 0.00011 21.7 0.0 1.5 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase ACT_6 PF13740.6 gi|297526523|ref|YP_003668547.1| - 0.16 11.9 0.1 0.87 9.6 0.0 2.0 2 0 0 2 2 2 0 ACT domain PadR PF03551.14 gi|297526524|ref|YP_003668548.1| - 2.3e-06 27.4 1.5 4.4e-06 26.6 1.5 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|297526524|ref|YP_003668548.1| - 0.0027 17.5 0.1 0.0042 16.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_12 PF08461.10 gi|297526524|ref|YP_003668548.1| - 0.034 14.1 2.3 0.1 12.6 2.3 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|297526524|ref|YP_003668548.1| - 0.064 13.2 1.1 0.084 12.9 0.2 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix TrmB PF01978.19 gi|297526524|ref|YP_003668548.1| - 0.097 12.6 0.2 0.24 11.3 0.2 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SlpA PF03217.14 gi|297526524|ref|YP_003668548.1| - 0.098 13.3 3.5 0.22 12.1 3.5 1.6 1 0 0 1 1 1 0 Surface later protein A domain Mrr_N PF14338.6 gi|297526524|ref|YP_003668548.1| - 0.099 12.8 0.1 2.4 8.3 0.1 2.3 1 1 1 2 2 2 0 Mrr N-terminal domain YPEB PF14620.6 gi|297526524|ref|YP_003668548.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 YpeB sporulation HTH_27 PF13463.6 gi|297526524|ref|YP_003668548.1| - 0.15 12.6 0.7 0.38 11.3 0.0 2.0 3 0 0 3 3 3 0 Winged helix DNA-binding domain SPG48 PF14764.6 gi|297526524|ref|YP_003668548.1| - 0.19 12.2 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 AP-5 complex subunit, vesicle trafficking tRNA-synt_2 PF00152.20 gi|297526525|ref|YP_003668549.1| - 6e-85 285.1 0.1 7.5e-85 284.8 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|297526525|ref|YP_003668549.1| - 0.013 15.0 0.4 0.044 13.3 0.2 2.0 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) PaRep2b PF07775.11 gi|297526525|ref|YP_003668549.1| - 0.079 11.4 0.1 0.29 9.6 0.1 1.7 2 0 0 2 2 2 0 PaRep2b protein ADPrib_exo_Tox PF03496.14 gi|297526525|ref|YP_003668549.1| - 0.12 11.7 0.2 0.22 10.9 0.2 1.3 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme NOG1 PF06858.14 gi|297526525|ref|YP_003668549.1| - 0.18 11.6 0.0 22 4.9 0.0 2.4 2 0 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) Ribosomal_L35Ae PF01247.18 gi|297526526|ref|YP_003668550.1| - 1.8e-09 37.6 0.2 3.1e-09 36.9 0.2 1.4 1 1 0 1 1 1 1 Ribosomal protein L35Ae DUF4777 PF16007.5 gi|297526528|ref|YP_003668552.1| - 0.02 15.1 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) PI-TkoII_IV PF18714.1 gi|297526528|ref|YP_003668552.1| - 0.065 12.7 0.1 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 DNA polymerase II intein Domain IV DUF505 PF04458.12 gi|297526528|ref|YP_003668552.1| - 0.13 10.6 0.0 0.17 10.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TPP_enzyme_C PF02775.21 gi|297526529|ref|YP_003668553.1| - 7.2e-24 84.3 0.8 3.6e-23 82.1 0.3 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|297526529|ref|YP_003668553.1| - 7e-14 52.1 0.2 4.8e-13 49.4 0.1 2.1 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|297526529|ref|YP_003668553.1| - 5.6e-11 41.8 11.0 8.8e-08 31.7 3.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297526529|ref|YP_003668553.1| - 7.4e-08 32.9 6.6 1.7e-05 25.3 8.3 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297526529|ref|YP_003668553.1| - 9.1e-08 31.9 11.0 3.3e-05 23.8 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|297526529|ref|YP_003668553.1| - 2.1e-07 30.6 10.5 0.00048 20.0 1.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297526529|ref|YP_003668553.1| - 3.1e-06 27.2 11.8 0.0019 18.3 3.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|297526529|ref|YP_003668553.1| - 4.2e-06 26.8 7.3 1.1e-05 25.5 7.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297526529|ref|YP_003668553.1| - 4.5e-05 24.3 5.1 0.00074 20.4 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|297526529|ref|YP_003668553.1| - 4.9e-05 23.4 10.0 0.0011 19.0 11.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Transket_pyr PF02779.24 gi|297526529|ref|YP_003668553.1| - 0.00032 20.4 0.0 0.0009 19.0 0.0 1.8 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Fer4_4 PF12800.7 gi|297526529|ref|YP_003668553.1| - 0.00041 20.6 11.3 0.056 14.0 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|297526529|ref|YP_003668553.1| - 0.00045 19.9 0.5 0.002 17.8 0.1 2.1 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_8 PF13183.6 gi|297526529|ref|YP_003668553.1| - 0.0063 16.9 4.2 0.28 11.7 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|297526529|ref|YP_003668553.1| - 0.37 11.4 10.3 0.23 12.0 1.6 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|297526529|ref|YP_003668553.1| - 0.72 10.6 10.5 4.1 8.2 1.5 2.9 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|297526529|ref|YP_003668553.1| - 2.3 8.9 10.3 8.6 7.0 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|297526529|ref|YP_003668553.1| - 3 8.7 5.1 3.9 8.4 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|297526529|ref|YP_003668553.1| - 5.9 8.1 18.7 0.29 12.1 6.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|297526530|ref|YP_003668554.1| - 3.9e-37 128.0 0.0 4.7e-37 127.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase GDP_Man_Dehyd PF16363.5 gi|297526531|ref|YP_003668555.1| - 1.3e-58 199.0 0.0 5.6e-58 196.9 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|297526531|ref|YP_003668555.1| - 1.8e-56 191.3 0.0 2.5e-56 190.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|297526531|ref|YP_003668555.1| - 5.8e-25 87.8 0.0 7.5e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|297526531|ref|YP_003668555.1| - 2e-17 63.2 0.0 2.5e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|297526531|ref|YP_003668555.1| - 1.6e-16 60.4 0.0 8.4e-16 57.9 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|297526531|ref|YP_003668555.1| - 7.8e-10 38.3 0.1 1.7e-07 30.7 0.1 2.7 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|297526531|ref|YP_003668555.1| - 1.9e-09 37.5 0.0 2e-08 34.1 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|297526531|ref|YP_003668555.1| - 1.8e-08 34.5 0.0 2.8e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|297526531|ref|YP_003668555.1| - 4.1e-07 29.6 0.0 0.00022 20.8 0.0 2.3 2 0 0 2 2 2 2 short chain dehydrogenase KR PF08659.10 gi|297526531|ref|YP_003668555.1| - 0.039 13.9 0.2 0.21 11.5 0.2 2.0 1 1 0 1 1 1 0 KR domain Sacchrp_dh_NADP PF03435.18 gi|297526531|ref|YP_003668555.1| - 0.15 12.4 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Prefoldin_2 PF01920.20 gi|297526532|ref|YP_003668556.1| - 0.00011 22.1 4.5 0.00011 22.1 4.5 1.9 2 0 0 2 2 1 1 Prefoldin subunit DUF5320 PF17253.2 gi|297526532|ref|YP_003668556.1| - 0.0016 19.5 5.6 0.0019 19.2 0.4 2.5 1 1 1 2 2 2 1 Family of unknown function (DUF5320) DUF812 PF05667.11 gi|297526532|ref|YP_003668556.1| - 0.0021 17.1 0.4 0.0025 16.8 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DUF16 PF01519.16 gi|297526532|ref|YP_003668556.1| - 0.0072 16.8 0.6 0.0072 16.8 0.6 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF16 RasGAP_C PF03836.15 gi|297526532|ref|YP_003668556.1| - 0.0085 16.2 0.8 0.0085 16.2 0.8 1.4 2 0 0 2 2 1 1 RasGAP C-terminus DUF2205 PF10224.9 gi|297526532|ref|YP_003668556.1| - 0.0086 16.0 1.1 0.0086 16.0 1.1 1.5 2 0 0 2 2 1 1 Short coiled-coil protein HemX PF04375.14 gi|297526532|ref|YP_003668556.1| - 0.015 14.6 0.5 0.018 14.3 0.5 1.1 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Fib_alpha PF08702.10 gi|297526532|ref|YP_003668556.1| - 0.015 15.5 0.1 0.076 13.2 0.0 1.7 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family XhlA PF10779.9 gi|297526532|ref|YP_003668556.1| - 0.015 15.5 3.4 0.023 14.9 3.4 1.1 1 0 0 1 1 1 0 Haemolysin XhlA Helo_like_N PF17111.5 gi|297526532|ref|YP_003668556.1| - 0.018 14.4 0.5 0.027 13.8 0.5 1.2 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins DUF4175 PF13779.6 gi|297526532|ref|YP_003668556.1| - 0.019 12.9 5.8 0.024 12.6 5.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) AAA_32 PF13654.6 gi|297526532|ref|YP_003668556.1| - 0.022 13.5 0.1 0.03 13.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|297526532|ref|YP_003668556.1| - 0.028 14.9 1.0 0.035 14.6 1.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|297526532|ref|YP_003668556.1| - 0.029 13.0 1.1 0.035 12.8 1.1 1.1 1 0 0 1 1 1 0 AAA domain Tektin PF03148.14 gi|297526532|ref|YP_003668556.1| - 0.034 12.9 2.8 0.049 12.4 2.8 1.2 1 0 0 1 1 1 0 Tektin family Sec2p PF06428.11 gi|297526532|ref|YP_003668556.1| - 0.034 14.1 2.4 0.034 14.1 2.4 1.4 2 0 0 2 2 1 0 GDP/GTP exchange factor Sec2p APG6_N PF17675.1 gi|297526532|ref|YP_003668556.1| - 0.043 14.3 7.3 0.043 14.3 7.3 1.7 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4140 PF13600.6 gi|297526532|ref|YP_003668556.1| - 0.063 13.7 2.5 0.088 13.2 2.5 1.4 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) ATP-synt_D PF01813.17 gi|297526532|ref|YP_003668556.1| - 0.07 13.0 2.2 0.098 12.5 2.2 1.1 1 0 0 1 1 1 0 ATP synthase subunit D TFIIA PF03153.13 gi|297526532|ref|YP_003668556.1| - 0.072 13.1 4.5 0.076 13.0 4.5 1.0 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit TPD52 PF04201.15 gi|297526532|ref|YP_003668556.1| - 0.079 12.6 1.1 0.1 12.2 1.1 1.2 1 0 0 1 1 1 0 Tumour protein D52 family DUF4407 PF14362.6 gi|297526532|ref|YP_003668556.1| - 0.079 12.3 0.2 0.098 12.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FapA PF03961.13 gi|297526532|ref|YP_003668556.1| - 0.088 11.4 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A SidC_N PF18219.1 gi|297526532|ref|YP_003668556.1| - 0.12 11.3 1.7 0.16 10.9 1.7 1.2 1 0 0 1 1 1 0 SidC N-terminal domain EMP24_GP25L PF01105.24 gi|297526532|ref|YP_003668556.1| - 0.22 11.4 0.4 0.33 10.9 0.4 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD GrpE PF01025.19 gi|297526532|ref|YP_003668556.1| - 0.95 9.1 5.9 1 9.0 5.9 1.2 1 1 0 1 1 1 0 GrpE MobC PF05713.11 gi|297526532|ref|YP_003668556.1| - 2 9.0 3.8 0.4 11.2 0.6 1.5 2 0 0 2 2 1 0 Bacterial mobilisation protein (MobC) UPF0242 PF06785.11 gi|297526532|ref|YP_003668556.1| - 3 7.9 11.1 5.6 7.0 11.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF1730 PF08331.10 gi|297526532|ref|YP_003668556.1| - 3.4 7.7 6.0 0.75 9.8 0.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1730) Prefoldin PF02996.17 gi|297526532|ref|YP_003668556.1| - 3.6 7.5 8.2 0.07 13.0 1.2 1.7 2 0 0 2 2 2 0 Prefoldin subunit Nitro_FeMo-Co PF02579.17 gi|297526535|ref|YP_003668559.1| - 2.9e-15 56.4 0.0 3.9e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor MarC PF01914.17 gi|297526536|ref|YP_003668560.1| - 6.3e-39 133.5 16.1 8e-39 133.1 16.1 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein ABC_tran PF00005.27 gi|297526538|ref|YP_003668562.1| - 2.2e-29 102.7 0.0 3.5e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|297526538|ref|YP_003668562.1| - 3.1e-05 23.5 0.1 0.00027 20.5 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|297526538|ref|YP_003668562.1| - 0.00015 21.7 0.2 0.053 13.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|297526538|ref|YP_003668562.1| - 0.023 14.9 0.0 0.46 10.8 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|297526538|ref|YP_003668562.1| - 0.027 14.7 0.0 0.061 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|297526538|ref|YP_003668562.1| - 0.032 14.6 0.0 0.036 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|297526538|ref|YP_003668562.1| - 0.033 14.1 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|297526538|ref|YP_003668562.1| - 0.072 13.0 0.1 0.16 11.9 0.0 1.5 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|297526538|ref|YP_003668562.1| - 0.099 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|297526538|ref|YP_003668562.1| - 0.12 12.1 0.1 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|297526538|ref|YP_003668562.1| - 0.13 12.5 0.0 0.18 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|297526539|ref|YP_003668563.1| - 3.8e-19 69.2 14.0 3.8e-19 69.2 14.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|297526540|ref|YP_003668564.1| - 3.4e-32 112.0 0.0 4.4e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|297526540|ref|YP_003668564.1| - 3.8e-08 33.6 0.0 6.3e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|297526541|ref|YP_003668565.1| - 1.2e-45 155.1 0.0 1.6e-45 154.6 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|297526541|ref|YP_003668565.1| - 2.1e-09 37.2 0.1 3.5e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family OTCace PF00185.24 gi|297526542|ref|YP_003668566.1| - 1.8e-41 141.8 0.0 4.4e-41 140.6 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|297526542|ref|YP_003668566.1| - 9.9e-37 126.2 0.0 1.8e-36 125.4 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Acetyltransf_1 PF00583.25 gi|297526542|ref|YP_003668566.1| - 0.051 13.8 1.4 0.85 9.9 0.4 2.7 2 1 1 3 3 3 0 Acetyltransferase (GNAT) family Myelin_PLP PF01275.19 gi|297526543|ref|YP_003668567.1| - 0.2 11.5 6.8 0.24 11.3 6.8 1.2 1 0 0 1 1 1 0 Myelin proteolipid protein (PLP or lipophilin) Aminotran_1_2 PF00155.21 gi|297526544|ref|YP_003668568.1| - 2.3e-73 247.4 0.0 2.7e-73 247.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|297526544|ref|YP_003668568.1| - 1.1e-11 44.7 0.0 2e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|297526544|ref|YP_003668568.1| - 2.3e-08 33.4 0.0 6.3e-08 32.0 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|297526544|ref|YP_003668568.1| - 2.7e-07 30.2 0.0 4e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|297526544|ref|YP_003668568.1| - 3.1e-06 26.0 0.0 5e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF89 PF01937.19 gi|297526545|ref|YP_003668569.1| - 1.2e-37 129.7 0.0 1.6e-37 129.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 MafB19-deam PF14437.6 gi|297526545|ref|YP_003668569.1| - 0.14 11.9 0.1 0.34 10.7 0.1 1.6 1 0 0 1 1 1 0 MafB19-like deaminase SBP_bac_5 PF00496.22 gi|297526546|ref|YP_003668570.1| - 4.9e-07 29.0 0.0 5.4e-07 28.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1654 PF07867.11 gi|297526548|ref|YP_003668572.1| - 0.017 14.8 0.1 0.023 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) DNA_pol_B PF00136.21 gi|297526549|ref|YP_003668573.1| - 1.6e-22 79.9 0.1 9.7e-22 77.3 0.1 2.0 1 1 0 1 1 1 1 DNA polymerase family B DSX_dimer PF08828.10 gi|297526549|ref|YP_003668573.1| - 0.053 13.2 0.0 0.23 11.1 0.0 2.1 2 0 0 2 2 2 0 Doublesex dimerisation domain N_formyltrans_C PF18216.1 gi|297526549|ref|YP_003668573.1| - 0.12 12.0 0.8 0.32 10.7 0.1 2.2 2 0 0 2 2 2 0 N-formyltransferase dimerization C-terminal domain ODV-E18 PF10717.9 gi|297526550|ref|YP_003668574.1| - 0.93 9.4 3.0 1.5 8.7 3.0 1.3 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF4064 PF13273.6 gi|297526551|ref|YP_003668575.1| - 0.032 14.5 1.6 4.2 7.7 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) LapA_dom PF06305.11 gi|297526551|ref|YP_003668575.1| - 8.9 6.2 8.6 0.98 9.3 0.1 2.5 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain ABC_tran PF00005.27 gi|297526554|ref|YP_003668578.1| - 2e-23 83.4 0.0 3.5e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526554|ref|YP_003668578.1| - 7.2e-10 39.1 3.2 0.00016 21.6 0.5 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526554|ref|YP_003668578.1| - 1e-07 31.6 0.7 4.6e-05 23.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|297526554|ref|YP_003668578.1| - 1.2e-06 29.2 0.7 1.3e-06 29.1 0.7 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|297526554|ref|YP_003668578.1| - 1.3e-05 25.1 2.5 1.9e-05 24.5 2.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|297526554|ref|YP_003668578.1| - 0.0025 17.5 0.1 0.0074 16.0 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|297526554|ref|YP_003668578.1| - 0.0052 15.5 2.1 0.011 14.4 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|297526554|ref|YP_003668578.1| - 0.0072 16.1 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|297526554|ref|YP_003668578.1| - 0.013 15.9 0.3 0.078 13.4 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|297526554|ref|YP_003668578.1| - 0.019 15.3 0.3 0.073 13.3 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|297526554|ref|YP_003668578.1| - 0.019 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|297526554|ref|YP_003668578.1| - 0.024 13.7 0.0 0.044 12.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|297526554|ref|YP_003668578.1| - 0.062 13.2 0.6 0.35 10.8 0.1 2.0 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|297526554|ref|YP_003668578.1| - 0.088 12.1 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.6 gi|297526554|ref|YP_003668578.1| - 0.09 13.2 0.7 15 6.0 0.1 2.6 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|297526554|ref|YP_003668578.1| - 0.092 11.9 0.6 0.3 10.2 0.6 1.8 1 1 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.6 gi|297526554|ref|YP_003668578.1| - 0.12 12.7 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.6 gi|297526554|ref|YP_003668578.1| - 0.15 12.4 0.2 0.3 11.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain FGGY_N PF00370.21 gi|297526555|ref|YP_003668579.1| - 6.3e-72 242.1 0.0 1e-71 241.4 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|297526555|ref|YP_003668579.1| - 9.2e-61 205.0 0.0 6.4e-60 202.3 0.0 2.0 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|297526555|ref|YP_003668579.1| - 0.00041 19.9 0.1 0.049 13.1 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MFS_1 PF07690.16 gi|297526556|ref|YP_003668580.1| - 1.5e-33 116.2 41.2 1.5e-33 116.2 41.2 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily Peptidase_S15 PF02129.18 gi|297526557|ref|YP_003668581.1| - 1.7e-21 77.0 0.1 1.9e-14 53.9 0.1 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|297526557|ref|YP_003668581.1| - 5.5e-20 71.7 0.0 1.4e-13 50.7 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|297526557|ref|YP_003668581.1| - 1.3e-17 64.0 0.2 1.3e-16 60.7 0.2 2.0 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|297526557|ref|YP_003668581.1| - 3.7e-13 49.7 0.0 3.8e-10 39.9 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|297526557|ref|YP_003668581.1| - 5.3e-13 49.0 0.2 3.1e-11 43.3 0.2 2.2 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|297526557|ref|YP_003668581.1| - 3.1e-10 40.1 0.0 3e-09 36.9 0.0 2.0 1 1 0 2 2 2 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 gi|297526557|ref|YP_003668581.1| - 1.8e-09 38.6 0.0 2.3e-09 38.2 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|297526557|ref|YP_003668581.1| - 8.2e-09 35.7 0.1 4.3e-08 33.3 0.1 2.0 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal AXE1 PF05448.12 gi|297526557|ref|YP_003668581.1| - 4.5e-07 28.9 0.2 8.2e-05 21.4 0.0 2.9 2 1 1 3 3 3 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.16 gi|297526557|ref|YP_003668581.1| - 0.00024 21.0 0.1 1.4 8.7 0.0 2.8 2 1 0 3 3 3 2 Phospholipase/Carboxylesterase DUF676 PF05057.14 gi|297526557|ref|YP_003668581.1| - 0.00046 19.8 0.0 0.00065 19.3 0.0 1.4 1 1 0 1 1 1 1 Putative serine esterase (DUF676) Abhydrolase_7 PF12715.7 gi|297526557|ref|YP_003668581.1| - 0.00093 18.5 0.0 0.0015 17.8 0.0 1.3 1 0 0 1 1 1 1 Abhydrolase family PhoPQ_related PF10142.9 gi|297526557|ref|YP_003668581.1| - 0.0012 17.5 0.2 0.002 16.9 0.0 1.4 2 0 0 2 2 2 1 PhoPQ-activated pathogenicity-related protein Esterase PF00756.20 gi|297526557|ref|YP_003668581.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 Putative esterase DUF829 PF05705.14 gi|297526557|ref|YP_003668581.1| - 0.0017 18.3 0.0 0.0037 17.2 0.0 1.5 1 1 1 2 2 2 1 Eukaryotic protein of unknown function (DUF829) PGAP1 PF07819.13 gi|297526557|ref|YP_003668581.1| - 0.003 17.3 0.0 0.0058 16.4 0.0 1.4 1 0 0 1 1 1 1 PGAP1-like protein Abhydrolase_5 PF12695.7 gi|297526557|ref|YP_003668581.1| - 0.013 15.2 0.2 4.8 6.9 0.0 2.6 3 0 0 3 3 3 0 Alpha/beta hydrolase family Chlorophyllase2 PF12740.7 gi|297526557|ref|YP_003668581.1| - 0.023 13.6 0.0 0.04 12.8 0.0 1.4 1 0 0 1 1 1 0 Chlorophyllase enzyme Abhydro_lipase PF04083.16 gi|297526557|ref|YP_003668581.1| - 0.048 13.2 0.0 0.094 12.3 0.0 1.5 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region LIP PF03583.14 gi|297526557|ref|YP_003668581.1| - 0.092 12.1 0.1 1.9 7.7 0.0 2.1 2 0 0 2 2 2 0 Secretory lipase Abhydrolase_3 PF07859.13 gi|297526557|ref|YP_003668581.1| - 0.11 12.4 0.0 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 alpha/beta hydrolase fold Lipase PF00151.19 gi|297526557|ref|YP_003668581.1| - 0.19 11.0 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Lipase GDPD PF03009.17 gi|297526558|ref|YP_003668582.1| - 2.4e-25 89.7 0.0 8.8e-24 84.6 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Glyco_hydro_10 PF00331.20 gi|297526558|ref|YP_003668582.1| - 0.014 14.5 0.0 0.018 14.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 10 PI-PLC-X PF00388.19 gi|297526558|ref|YP_003668582.1| - 0.073 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain DUF1667 PF07892.11 gi|297526559|ref|YP_003668583.1| - 8.2e-32 109.1 1.6 1.2e-31 108.6 1.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.16 gi|297526559|ref|YP_003668583.1| - 0.00039 20.3 2.5 0.0011 18.9 2.5 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Pyr_redox_2 PF07992.14 gi|297526560|ref|YP_003668584.1| - 7.6e-31 107.4 0.3 2e-30 106.1 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|297526560|ref|YP_003668584.1| - 1.4e-14 54.1 1.1 5.8e-07 29.1 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|297526560|ref|YP_003668584.1| - 2.5e-12 46.6 9.0 2.9e-06 26.7 0.3 4.6 2 2 3 5 5 5 3 FAD binding domain NAD_binding_8 PF13450.6 gi|297526560|ref|YP_003668584.1| - 4.4e-12 46.0 0.3 1.1e-08 35.2 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|297526560|ref|YP_003668584.1| - 6.7e-09 35.4 2.9 2.2e-05 23.9 0.0 2.5 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|297526560|ref|YP_003668584.1| - 4.3e-08 33.1 11.4 0.00044 20.0 0.9 4.1 2 2 2 4 4 4 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|297526560|ref|YP_003668584.1| - 5.1e-08 33.4 4.4 0.029 14.9 0.0 4.2 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|297526560|ref|YP_003668584.1| - 1.4e-07 31.1 0.1 4.5e-06 26.2 0.1 2.4 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase FAD_oxidored PF12831.7 gi|297526560|ref|YP_003668584.1| - 1.5e-07 31.1 0.0 4.4e-07 29.6 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|297526560|ref|YP_003668584.1| - 1.6e-07 30.4 2.9 6e-05 21.9 0.1 4.3 5 0 0 5 5 5 1 HI0933-like protein Thi4 PF01946.17 gi|297526560|ref|YP_003668584.1| - 5e-05 22.7 0.5 0.0029 16.9 0.0 2.8 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.22 gi|297526560|ref|YP_003668584.1| - 6.6e-05 22.2 3.2 0.0066 15.6 0.1 3.6 3 1 1 4 4 4 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|297526560|ref|YP_003668584.1| - 6.9e-05 23.2 0.1 0.013 16.0 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|297526560|ref|YP_003668584.1| - 0.0052 16.8 0.5 0.75 9.8 0.5 2.4 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 gi|297526560|ref|YP_003668584.1| - 0.0064 15.6 5.1 0.035 13.1 0.4 2.4 3 0 0 3 3 3 1 Lycopene cyclase protein ELFV_dehydrog PF00208.21 gi|297526560|ref|YP_003668584.1| - 0.0079 15.9 0.3 0.023 14.4 0.0 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.17 gi|297526560|ref|YP_003668584.1| - 0.038 14.6 1.6 1 10.0 0.2 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|297526560|ref|YP_003668584.1| - 0.052 13.2 1.9 1.2 8.8 0.1 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|297526560|ref|YP_003668584.1| - 0.099 12.2 0.9 0.82 9.2 0.4 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|297526560|ref|YP_003668584.1| - 0.43 10.9 2.9 33 4.8 1.4 2.7 3 0 0 3 3 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|297526560|ref|YP_003668584.1| - 0.53 10.3 5.3 0.31 11.0 0.3 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding GMC_oxred_N PF00732.19 gi|297526560|ref|YP_003668584.1| - 0.76 9.1 1.8 12 5.1 0.0 3.2 3 1 1 4 4 4 0 GMC oxidoreductase AlaDh_PNT_C PF01262.21 gi|297526560|ref|YP_003668584.1| - 0.77 9.0 3.5 18 4.6 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|297526561|ref|YP_003668585.1| - 2.2e-64 218.2 0.0 2.7e-64 218.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|297526561|ref|YP_003668585.1| - 1.5e-09 38.1 0.5 4.3e-09 36.6 0.5 1.9 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|297526561|ref|YP_003668585.1| - 3e-08 33.3 0.1 0.0013 18.0 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|297526561|ref|YP_003668585.1| - 3e-07 30.9 2.7 0.0055 17.2 0.1 2.9 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|297526561|ref|YP_003668585.1| - 1.3e-06 28.5 0.0 3e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|297526561|ref|YP_003668585.1| - 6.2e-06 26.5 0.8 0.0003 21.0 0.1 2.8 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox_3 PF13738.6 gi|297526561|ref|YP_003668585.1| - 0.00014 21.2 1.6 0.23 10.7 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|297526561|ref|YP_003668585.1| - 0.00016 22.0 0.3 0.0019 18.5 0.0 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_9 PF13454.6 gi|297526561|ref|YP_003668585.1| - 0.00051 20.1 1.5 0.052 13.5 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 gi|297526561|ref|YP_003668585.1| - 0.00059 19.2 2.8 0.0018 17.5 0.1 2.5 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|297526561|ref|YP_003668585.1| - 0.00061 19.2 0.2 0.005 16.2 0.2 2.2 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|297526561|ref|YP_003668585.1| - 0.0018 17.2 0.4 1.5 7.5 0.1 2.8 3 0 0 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|297526561|ref|YP_003668585.1| - 0.0021 17.2 0.1 0.048 12.7 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.6 gi|297526561|ref|YP_003668585.1| - 0.013 14.7 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|297526561|ref|YP_003668585.1| - 0.019 13.7 0.3 0.28 9.8 0.0 2.2 2 0 0 2 2 2 0 HI0933-like protein Phage_cap_E PF03864.15 gi|297526561|ref|YP_003668585.1| - 0.046 12.9 0.0 0.069 12.3 0.0 1.2 1 0 0 1 1 1 0 Phage major capsid protein E 3HCDH_N PF02737.18 gi|297526561|ref|YP_003668585.1| - 0.048 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|297526561|ref|YP_003668585.1| - 0.066 12.3 0.0 0.21 10.6 0.0 1.8 1 1 0 1 1 1 0 FAD binding domain DUF1188 PF06690.11 gi|297526561|ref|YP_003668585.1| - 0.067 12.7 1.5 0.28 10.7 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1188) Amino_oxidase PF01593.24 gi|297526561|ref|YP_003668585.1| - 0.073 12.3 0.0 0.22 10.8 0.1 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 gi|297526561|ref|YP_003668585.1| - 0.084 12.1 0.1 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain UPF0180 PF03698.13 gi|297526561|ref|YP_003668585.1| - 0.6 10.3 3.7 1.2 9.3 0.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) tRNA-synt_2d PF01409.20 gi|297526562|ref|YP_003668586.1| - 2.9e-77 259.5 0.0 3.9e-77 259.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|297526562|ref|YP_003668586.1| - 2.3e-06 27.2 0.0 0.001 18.6 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|297526562|ref|YP_003668586.1| - 2.4e-06 26.9 0.7 0.021 13.9 0.1 3.1 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) MarR PF01047.22 gi|297526562|ref|YP_003668586.1| - 8.5e-06 25.6 0.7 0.0002 21.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|297526562|ref|YP_003668586.1| - 2.8e-05 23.8 0.3 8.8e-05 22.2 0.1 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|297526562|ref|YP_003668586.1| - 0.00025 20.9 1.4 0.00076 19.3 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|297526562|ref|YP_003668586.1| - 0.00042 20.2 2.4 0.0081 16.1 0.0 3.0 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|297526562|ref|YP_003668586.1| - 0.0006 19.8 0.2 0.0021 18.1 0.2 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|297526562|ref|YP_003668586.1| - 0.0052 16.7 1.9 0.0072 16.3 0.1 2.1 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|297526562|ref|YP_003668586.1| - 0.013 15.4 1.9 0.15 12.0 0.2 2.8 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|297526562|ref|YP_003668586.1| - 0.018 15.2 0.2 0.042 14.0 0.2 1.6 1 0 0 1 1 1 0 DprA winged helix domain HTH_5 PF01022.20 gi|297526562|ref|YP_003668586.1| - 0.076 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|297526562|ref|YP_003668586.1| - 0.1 12.4 0.1 0.35 10.7 0.1 1.9 1 0 0 1 1 1 0 LexA DNA binding domain IF2_N PF04760.15 gi|297526562|ref|YP_003668586.1| - 0.18 11.6 0.1 0.66 9.8 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_36 PF13730.6 gi|297526562|ref|YP_003668586.1| - 0.2 11.7 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PIN_5 PF08745.11 gi|297526563|ref|YP_003668587.1| - 1.7e-65 220.4 0.3 1.9e-65 220.2 0.3 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Methyltr_RsmB-F PF01189.17 gi|297526564|ref|YP_003668588.1| - 1.8e-31 109.4 0.0 2.5e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MAGE PF01454.19 gi|297526564|ref|YP_003668588.1| - 0.032 13.9 0.1 2.6 7.7 0.1 2.2 2 0 0 2 2 2 0 MAGE family STN1_2 PF09170.10 gi|297526564|ref|YP_003668588.1| - 0.041 14.1 0.0 0.081 13.1 0.0 1.4 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Sigma_reg_C PF13791.6 gi|297526564|ref|YP_003668588.1| - 0.054 13.7 0.1 0.2 11.9 0.1 1.8 1 1 0 1 1 1 0 Sigma factor regulator C-terminal Radical_SAM PF04055.21 gi|297526565|ref|YP_003668589.1| - 1.3e-09 38.7 0.0 2e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|297526565|ref|YP_003668589.1| - 0.011 16.0 0.0 0.23 11.7 0.0 2.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|297526565|ref|YP_003668589.1| - 0.013 15.6 0.1 0.1 12.7 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain bZIP_2 PF07716.15 gi|297526566|ref|YP_003668590.1| - 0.0042 17.1 1.4 0.0048 17.0 1.4 1.1 1 0 0 1 1 1 1 Basic region leucine zipper XhlA PF10779.9 gi|297526566|ref|YP_003668590.1| - 0.0081 16.3 1.4 0.0092 16.2 1.4 1.1 1 0 0 1 1 1 1 Haemolysin XhlA DUF4988 PF16378.5 gi|297526566|ref|YP_003668590.1| - 0.011 15.4 0.8 0.012 15.3 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function CLZ PF16526.5 gi|297526566|ref|YP_003668590.1| - 0.012 16.0 0.1 0.012 16.0 0.1 1.1 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3847 PF12958.7 gi|297526566|ref|YP_003668590.1| - 0.016 15.3 0.6 0.017 15.2 0.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3847) PspB PF06667.12 gi|297526566|ref|YP_003668590.1| - 0.017 15.2 2.0 0.019 15.0 2.0 1.2 1 0 0 1 1 1 0 Phage shock protein B Prefoldin_2 PF01920.20 gi|297526566|ref|YP_003668590.1| - 0.033 14.2 0.7 0.034 14.1 0.7 1.1 1 0 0 1 1 1 0 Prefoldin subunit Sugarporin_N PF11471.8 gi|297526566|ref|YP_003668590.1| - 0.04 13.9 0.3 0.046 13.7 0.3 1.2 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension FlaC_arch PF05377.11 gi|297526566|ref|YP_003668590.1| - 0.04 14.3 1.7 0.046 14.1 1.7 1.1 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) HSBP1 PF06825.12 gi|297526566|ref|YP_003668590.1| - 0.048 13.5 5.7 0.32 10.9 5.7 1.9 1 1 0 1 1 1 0 Heat shock factor binding protein 1 DUF16 PF01519.16 gi|297526566|ref|YP_003668590.1| - 0.05 14.1 0.3 0.053 14.0 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF16 Prefoldin PF02996.17 gi|297526566|ref|YP_003668590.1| - 0.06 13.3 0.4 0.061 13.2 0.4 1.0 1 0 0 1 1 1 0 Prefoldin subunit Tropomyosin_1 PF12718.7 gi|297526566|ref|YP_003668590.1| - 0.061 13.5 0.3 0.061 13.5 0.3 1.0 1 0 0 1 1 1 0 Tropomyosin like ABC_tran_CTD PF16326.5 gi|297526566|ref|YP_003668590.1| - 0.078 13.2 2.4 0.15 12.3 2.4 1.6 1 1 0 1 1 1 0 ABC transporter C-terminal domain DUF1192 PF06698.11 gi|297526566|ref|YP_003668590.1| - 0.081 13.0 4.1 0.11 12.6 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DUF3450 PF11932.8 gi|297526566|ref|YP_003668590.1| - 0.11 11.8 0.4 0.099 11.9 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) BRI3BP PF14965.6 gi|297526566|ref|YP_003668590.1| - 0.13 11.8 0.6 0.15 11.6 0.6 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 MetOD2 PF18548.1 gi|297526566|ref|YP_003668590.1| - 0.13 12.4 3.5 0.15 12.2 3.5 1.1 1 0 0 1 1 1 0 Metanogen output domain 2 Fib_alpha PF08702.10 gi|297526566|ref|YP_003668590.1| - 0.14 12.4 0.6 0.13 12.4 0.6 1.0 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF5082 PF16888.5 gi|297526566|ref|YP_003668590.1| - 0.17 12.2 3.2 0.18 12.1 3.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) GreA_GreB_N PF03449.15 gi|297526566|ref|YP_003668590.1| - 0.3 11.3 5.2 2 8.6 0.7 2.0 1 1 1 2 2 2 0 Transcription elongation factor, N-terminal MRF_C1 PF13887.6 gi|297526566|ref|YP_003668590.1| - 0.31 10.2 3.8 1.9 7.7 0.4 2.2 1 1 0 2 2 2 0 Myelin gene regulatory factor -C-terminal domain 1 DUF5446 PF17522.2 gi|297526566|ref|YP_003668590.1| - 0.35 11.1 4.2 0.54 10.5 4.2 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5446) DUF5320 PF17253.2 gi|297526566|ref|YP_003668590.1| - 0.42 11.7 0.6 0.42 11.7 0.6 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5320) PKcGMP_CC PF16808.5 gi|297526566|ref|YP_003668590.1| - 0.49 10.3 7.8 6.3 6.7 7.8 2.2 1 1 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Paralemmin PF03285.15 gi|297526566|ref|YP_003668590.1| - 0.53 9.8 1.8 0.5 9.9 1.8 1.0 1 0 0 1 1 1 0 Paralemmin YvrJ PF12841.7 gi|297526566|ref|YP_003668590.1| - 1.2 8.8 4.8 0.81 9.3 0.7 2.1 1 1 1 2 2 2 0 YvrJ protein family LBP_C PF17386.2 gi|297526567|ref|YP_003668591.1| - 0.068 13.1 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Lacto-N-biose phosphorylase C-terminal domain PQQ_2 PF13360.6 gi|297526567|ref|YP_003668591.1| - 0.1 12.2 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 PQQ-like domain Na_H_Exchanger PF00999.21 gi|297526569|ref|YP_003668593.1| - 4.3e-47 160.7 41.1 5.3e-47 160.4 41.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family tRNA_synthFbeta PF17759.1 gi|297526570|ref|YP_003668594.1| - 6.8e-38 130.3 0.0 2.8e-37 128.2 0.0 2.0 2 1 1 3 3 3 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|297526570|ref|YP_003668594.1| - 6e-20 71.3 3.2 8.6e-16 58.0 0.6 3.1 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|297526570|ref|YP_003668594.1| - 3.5e-15 56.1 0.0 7.5e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|297526570|ref|YP_003668594.1| - 2.8e-05 24.2 0.2 0.0074 16.5 0.0 3.1 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain Peptidase_M28 PF04389.17 gi|297526571|ref|YP_003668595.1| - 2.2e-10 40.6 0.0 3.2e-06 27.0 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 DUF4910 PF16254.5 gi|297526571|ref|YP_003668595.1| - 1.4e-05 24.1 0.2 0.00015 20.7 0.2 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4910) Isochorismatase PF00857.20 gi|297526572|ref|YP_003668596.1| - 1.5e-28 100.2 0.1 2.5e-28 99.4 0.1 1.4 1 1 0 1 1 1 1 Isochorismatase family Phosphorylase PF00343.20 gi|297526573|ref|YP_003668597.1| - 2e-14 52.8 1.4 2.2e-11 42.8 0.0 3.2 2 1 1 3 3 3 3 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|297526573|ref|YP_003668597.1| - 2.1e-07 30.6 0.0 5.8e-07 29.2 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297526573|ref|YP_003668597.1| - 4.3e-05 24.0 0.0 7.6e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Sigma70_ner PF04546.13 gi|297526573|ref|YP_003668597.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, non-essential region Glyco_trans_1_2 PF13524.6 gi|297526573|ref|YP_003668597.1| - 0.16 12.4 0.0 1 9.8 0.0 2.4 1 1 0 1 1 1 0 Glycosyl transferases group 1 Phage_TAC_8 PF10666.9 gi|297526573|ref|YP_003668597.1| - 0.2 12.0 2.5 0.34 11.2 0.0 2.5 3 0 0 3 3 3 0 Phage tail assembly chaperone protein Gp14 ()A118 ATLF PF07737.11 gi|297526574|ref|YP_003668598.1| - 0.019 14.3 0.8 0.023 14.0 0.8 1.2 1 0 0 1 1 1 0 Anthrax toxin lethal factor, N- and C-terminal domain Cupin_2 PF07883.11 gi|297526575|ref|YP_003668599.1| - 6.6e-19 67.4 0.6 9e-19 67.0 0.6 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|297526575|ref|YP_003668599.1| - 1.4e-07 31.5 0.1 1.6e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|297526575|ref|YP_003668599.1| - 3.8e-07 30.1 0.5 6.4e-07 29.4 0.5 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|297526575|ref|YP_003668599.1| - 1.9e-05 24.5 0.1 2.6e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|297526575|ref|YP_003668599.1| - 0.00035 20.2 0.0 0.00062 19.4 0.0 1.3 1 1 0 1 1 1 1 Cupin Asp_Arg_Hydrox PF05118.15 gi|297526575|ref|YP_003668599.1| - 0.0063 16.4 0.0 0.026 14.4 0.0 1.8 1 1 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase ARD PF03079.14 gi|297526575|ref|YP_003668599.1| - 0.21 11.8 0.6 0.38 10.9 0.4 1.5 1 1 1 2 2 2 0 ARD/ARD' family NAD_binding_2 PF03446.15 gi|297526576|ref|YP_003668600.1| - 6.3e-22 78.4 0.0 8.6e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|297526576|ref|YP_003668600.1| - 3.7e-08 33.9 0.0 2.5e-07 31.2 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|297526576|ref|YP_003668600.1| - 1.6e-07 31.4 0.0 3.2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|297526576|ref|YP_003668600.1| - 2.3e-07 30.3 0.0 4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|297526576|ref|YP_003668600.1| - 4.3e-05 23.5 0.0 0.00021 21.2 0.0 1.9 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|297526576|ref|YP_003668600.1| - 0.0016 18.0 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|297526576|ref|YP_003668600.1| - 0.0048 16.6 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|297526576|ref|YP_003668600.1| - 0.0095 15.2 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|297526576|ref|YP_003668600.1| - 0.012 15.9 0.1 0.023 14.9 0.1 1.4 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|297526576|ref|YP_003668600.1| - 0.015 15.3 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_11 PF14833.6 gi|297526576|ref|YP_003668600.1| - 0.028 14.7 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|297526576|ref|YP_003668600.1| - 0.041 13.4 0.2 0.11 12.1 0.1 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|297526576|ref|YP_003668600.1| - 0.048 13.9 0.0 0.42 10.9 0.0 2.1 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|297526576|ref|YP_003668600.1| - 0.052 13.0 0.0 0.099 12.1 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.22 gi|297526576|ref|YP_003668600.1| - 0.088 13.6 0.0 0.26 12.1 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Usp PF00582.26 gi|297526577|ref|YP_003668601.1| - 2e-23 83.5 0.2 2.4e-22 80.0 0.2 1.9 1 1 0 1 1 1 1 Universal stress protein family Polysacc_deac_2 PF04748.13 gi|297526577|ref|YP_003668601.1| - 0.0098 15.1 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 Divergent polysaccharide deacetylase OTCace PF00185.24 gi|297526577|ref|YP_003668601.1| - 0.13 12.4 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Gp_dh_C PF02800.20 gi|297526578|ref|YP_003668602.1| - 6e-25 87.7 0.2 8.5e-25 87.2 0.2 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|297526578|ref|YP_003668602.1| - 2.1e-09 37.6 0.1 5.5e-09 36.2 0.1 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|297526578|ref|YP_003668602.1| - 8.4e-06 26.1 0.4 3.6e-05 24.0 0.4 2.2 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|297526578|ref|YP_003668602.1| - 0.0037 18.1 0.1 0.013 16.3 0.0 2.0 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold COX2 PF00116.20 gi|297526578|ref|YP_003668602.1| - 0.0064 16.4 0.0 2 8.3 0.0 2.5 2 1 0 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain 2-Hacid_dh_C PF02826.19 gi|297526578|ref|YP_003668602.1| - 0.013 14.9 0.4 0.16 11.3 0.4 2.2 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|297526578|ref|YP_003668602.1| - 0.016 15.6 0.0 0.035 14.5 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|297526578|ref|YP_003668602.1| - 0.039 14.6 1.4 0.13 13.0 0.1 2.4 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Methyltransf_15 PF09445.10 gi|297526578|ref|YP_003668602.1| - 0.049 13.2 0.1 0.11 12.1 0.1 1.7 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase CoA_binding PF02629.19 gi|297526578|ref|YP_003668602.1| - 0.34 11.6 3.9 0.18 12.5 0.4 2.3 2 1 0 2 2 2 0 CoA binding domain PGK PF00162.19 gi|297526579|ref|YP_003668603.1| - 9.7e-99 330.8 0.0 1.1e-98 330.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DHO_dh PF01180.21 gi|297526580|ref|YP_003668604.1| - 9.2e-36 123.6 0.1 3.1e-30 105.4 0.1 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Fer4 PF00037.27 gi|297526580|ref|YP_003668604.1| - 2.5e-13 49.2 18.1 1.5e-07 30.9 0.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297526580|ref|YP_003668604.1| - 4.2e-13 49.2 7.0 9.1e-13 48.1 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|297526580|ref|YP_003668604.1| - 6e-12 46.0 9.4 1.3e-11 44.9 9.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297526580|ref|YP_003668604.1| - 6.6e-10 38.5 12.2 0.00015 21.6 2.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|297526580|ref|YP_003668604.1| - 4.4e-09 36.4 8.3 7.9e-09 35.5 8.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297526580|ref|YP_003668604.1| - 6.9e-09 35.4 17.7 6.7e-05 22.8 1.4 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|297526580|ref|YP_003668604.1| - 1.3e-07 32.4 4.0 0.00067 20.5 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|297526580|ref|YP_003668604.1| - 4.3e-07 29.9 18.7 6.7e-06 26.1 9.9 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain NMO PF03060.15 gi|297526580|ref|YP_003668604.1| - 1.1e-06 28.2 0.3 1.9e-06 27.5 0.3 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_8 PF13183.6 gi|297526580|ref|YP_003668604.1| - 0.00012 22.4 10.3 0.0011 19.4 9.9 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|297526580|ref|YP_003668604.1| - 0.00025 20.6 0.1 0.0025 17.3 0.0 2.5 4 0 0 4 4 4 1 Histidine biosynthesis protein Fer4_22 PF17179.4 gi|297526580|ref|YP_003668604.1| - 0.00076 20.3 5.9 0.36 11.7 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|297526580|ref|YP_003668604.1| - 0.0013 19.2 11.1 0.055 14.0 11.1 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain FMN_dh PF01070.18 gi|297526580|ref|YP_003668604.1| - 0.0018 17.4 2.9 0.0048 16.0 2.3 2.0 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Fer4_15 PF13459.6 gi|297526580|ref|YP_003668604.1| - 0.0049 17.6 6.8 0.36 11.6 0.7 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|297526580|ref|YP_003668604.1| - 0.0072 17.2 20.6 0.055 14.4 4.6 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|297526580|ref|YP_003668604.1| - 0.0094 16.5 8.4 0.28 11.8 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I IMPDH PF00478.25 gi|297526580|ref|YP_003668604.1| - 0.029 13.4 0.5 0.029 13.4 0.5 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Fer4_4 PF12800.7 gi|297526580|ref|YP_003668604.1| - 0.037 14.5 17.9 0.064 13.8 2.4 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain G3P_antiterm PF04309.12 gi|297526580|ref|YP_003668604.1| - 0.069 12.6 0.3 0.29 10.5 0.1 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF561 PF04481.12 gi|297526580|ref|YP_003668604.1| - 0.13 11.4 0.6 0.47 9.6 0.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF561) Cren7 PF11520.8 gi|297526582|ref|YP_003668606.1| - 4.3e-35 119.4 3.4 4.8e-35 119.3 3.4 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF4585 PF15232.6 gi|297526582|ref|YP_003668606.1| - 0.03 14.4 0.1 0.086 12.9 0.0 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4585) Amidohydro_1 PF01979.20 gi|297526583|ref|YP_003668607.1| - 2.2e-54 185.1 0.1 2.6e-54 184.8 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|297526583|ref|YP_003668607.1| - 1.3e-20 74.4 0.0 3.4e-14 53.2 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|297526583|ref|YP_003668607.1| - 0.13 11.7 0.3 1.5 8.1 0.3 2.3 1 1 0 1 1 1 0 TatD related DNase AA_kinase PF00696.28 gi|297526584|ref|YP_003668608.1| - 5.3e-30 104.8 0.0 1.3e-29 103.5 0.0 1.6 1 1 0 1 1 1 1 Amino acid kinase family Radical_SAM PF04055.21 gi|297526585|ref|YP_003668609.1| - 1.3e-20 74.5 0.0 2.1e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|297526585|ref|YP_003668609.1| - 1.4e-10 41.6 0.0 2.1e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|297526585|ref|YP_003668609.1| - 1.9e-07 31.2 0.0 4e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Acetyltransf_CG PF14542.6 gi|297526586|ref|YP_003668610.1| - 4.9e-21 74.7 0.0 8e-21 74.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|297526586|ref|YP_003668610.1| - 5.3e-06 26.6 0.1 1.1e-05 25.6 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|297526586|ref|YP_003668610.1| - 0.00011 22.6 0.0 0.00018 21.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|297526586|ref|YP_003668610.1| - 0.00021 21.4 0.3 0.00095 19.2 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|297526586|ref|YP_003668610.1| - 0.00022 20.8 0.2 0.00033 20.2 0.2 1.5 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_10 PF13673.7 gi|297526586|ref|YP_003668610.1| - 0.0003 20.7 0.0 0.00046 20.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|297526586|ref|YP_003668610.1| - 0.048 13.7 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Lactamase_B_2 PF12706.7 gi|297526587|ref|YP_003668611.1| - 7.4e-06 25.6 0.0 1.2e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|297526587|ref|YP_003668611.1| - 1.2e-05 25.4 0.3 2.8e-05 24.2 0.3 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|297526587|ref|YP_003668611.1| - 5.6e-05 23.1 0.0 0.0002 21.3 0.0 1.8 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Ribosomal_L10 PF00466.20 gi|297526587|ref|YP_003668611.1| - 0.017 15.3 1.2 0.073 13.2 0.3 2.6 2 1 0 2 2 2 0 Ribosomal protein L10 Arc_PepC PF06819.11 gi|297526587|ref|YP_003668611.1| - 0.21 11.7 8.5 0.041 14.0 3.7 2.2 2 1 0 2 2 2 0 Archaeal Peptidase A24 C-terminal Domain PIN PF01850.21 gi|297526588|ref|YP_003668612.1| - 8.5e-10 39.2 0.3 4.2e-09 37.0 0.3 1.8 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|297526588|ref|YP_003668612.1| - 0.00023 20.8 0.0 0.00091 18.9 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF5615) YqaH PF17448.2 gi|297526589|ref|YP_003668613.1| - 0.037 14.3 0.1 0.04 14.2 0.1 1.0 1 0 0 1 1 1 0 Uncharacterized YqaH-like PP1 PF07430.11 gi|297526590|ref|YP_003668614.1| - 0.19 11.8 1.0 0.53 10.4 0.0 2.2 2 1 0 3 3 3 0 Phloem filament protein PP1 cystatin-like domain OTCace PF00185.24 gi|297526591|ref|YP_003668615.1| - 8e-38 130.0 0.0 1.2e-37 129.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|297526591|ref|YP_003668615.1| - 3.4e-33 114.8 0.0 5e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RuvA_C PF07499.13 gi|297526591|ref|YP_003668615.1| - 0.1 13.1 0.3 0.25 11.9 0.3 1.7 1 0 0 1 1 1 0 RuvA, C-terminal domain Baculo_PEP_C PF04513.12 gi|297526593|ref|YP_003668617.1| - 0.00013 22.1 8.9 0.02 14.9 0.4 3.4 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|297526593|ref|YP_003668617.1| - 0.0073 16.2 10.0 0.055 13.4 6.9 2.1 1 1 0 2 2 2 1 Apolipoprotein A1/A4/E domain FokI_C PF02980.16 gi|297526593|ref|YP_003668617.1| - 0.0099 15.9 2.4 0.088 12.8 0.5 2.5 1 1 0 2 2 2 1 Restriction endonuclease FokI, catalytic domain HBD PF18534.1 gi|297526593|ref|YP_003668617.1| - 0.019 15.1 1.4 0.09 12.9 0.5 2.5 2 0 0 2 2 2 0 Helical bundle domain T3SSipB PF16535.5 gi|297526593|ref|YP_003668617.1| - 0.072 13.6 1.7 0.12 12.8 1.7 1.4 1 0 0 1 1 1 0 Type III cell invasion protein SipB TACC_C PF05010.14 gi|297526593|ref|YP_003668617.1| - 0.084 12.7 18.4 0.96 9.2 10.8 2.5 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Hemerythrin PF01814.23 gi|297526593|ref|YP_003668617.1| - 0.13 12.9 2.7 18 6.0 3.6 3.1 2 1 1 3 3 3 0 Hemerythrin HHE cation binding domain DUF4407 PF14362.6 gi|297526593|ref|YP_003668617.1| - 0.39 10.0 3.5 0.57 9.5 3.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Uso1_p115_C PF04871.13 gi|297526593|ref|YP_003668617.1| - 0.62 10.4 7.4 0.6 10.5 5.4 2.0 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region FliD_C PF07195.12 gi|297526593|ref|YP_003668617.1| - 0.82 9.0 9.8 11 5.4 9.0 2.8 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus YtxH PF12732.7 gi|297526593|ref|YP_003668617.1| - 1.1 9.9 2.6 75 4.0 2.6 3.0 1 1 0 1 1 1 0 YtxH-like protein DUF3450 PF11932.8 gi|297526593|ref|YP_003668617.1| - 1.5 8.0 13.2 1.5 8.0 6.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Lectin_N PF03954.14 gi|297526593|ref|YP_003668617.1| - 1.7 8.4 7.1 0.54 10.0 2.6 2.2 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain DUF1664 PF07889.12 gi|297526593|ref|YP_003668617.1| - 1.7 8.7 14.3 2.2 8.3 2.2 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) FlgN PF05130.12 gi|297526593|ref|YP_003668617.1| - 2.4 8.7 14.0 0.86 10.1 7.6 2.4 1 1 1 2 2 2 0 FlgN protein DUF3135 PF11333.8 gi|297526593|ref|YP_003668617.1| - 2.6 8.3 5.2 5.5 7.3 0.8 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3135) Snapin_Pallidin PF14712.6 gi|297526593|ref|YP_003668617.1| - 3.6 8.1 17.6 7.7 7.0 5.5 4.7 1 1 3 5 5 5 0 Snapin/Pallidin FlxA PF14282.6 gi|297526593|ref|YP_003668617.1| - 6.2 6.9 12.9 7.5 6.6 1.2 2.7 2 1 1 3 3 3 0 FlxA-like protein Nbl1_Borealin_N PF10444.9 gi|297526593|ref|YP_003668617.1| - 8.5 6.1 11.6 15 5.3 2.1 3.2 2 1 0 2 2 2 0 Nbl1 / Borealin N terminal MFS_1 PF07690.16 gi|297526594|ref|YP_003668618.1| - 6.5e-30 104.2 38.6 8.4e-17 61.1 16.0 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily OTCace PF00185.24 gi|297526595|ref|YP_003668619.1| - 6.9e-56 188.7 0.0 9.3e-56 188.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|297526595|ref|YP_003668619.1| - 3.6e-50 169.8 0.0 1e-49 168.3 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Glyco_hydro_101 PF12905.7 gi|297526595|ref|YP_003668619.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase STT3 PF02516.14 gi|297526596|ref|YP_003668620.1| - 2.1e-22 79.7 35.9 4.1e-22 78.8 35.9 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF2371 PF10177.9 gi|297526596|ref|YP_003668620.1| - 0.97 9.6 0.0 0.97 9.6 0.0 2.4 3 1 0 3 3 3 0 Uncharacterised conserved protein (DUF2371) LOH1CR12 PF10158.9 gi|297526597|ref|YP_003668621.1| - 0.00023 21.2 0.6 0.00061 19.8 0.4 1.7 1 1 1 2 2 2 1 Tumour suppressor protein HU-CCDC81_bac_2 PF18175.1 gi|297526597|ref|YP_003668621.1| - 0.0097 15.8 0.1 0.039 13.8 0.0 2.0 2 0 0 2 2 2 1 CCDC81-like prokaryotic HU domain 2 DUF4201 PF13870.6 gi|297526597|ref|YP_003668621.1| - 0.17 11.6 5.1 0.99 9.1 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4201) Occludin_ELL PF07303.13 gi|297526597|ref|YP_003668621.1| - 0.21 12.3 2.2 8.2 7.2 0.9 2.8 2 1 0 2 2 2 0 Occludin homology domain ParA PF10609.9 gi|297526599|ref|YP_003668623.1| - 1.8e-85 286.3 0.0 2.1e-85 286.1 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|297526599|ref|YP_003668623.1| - 1.9e-13 50.6 0.0 1.5e-12 47.7 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|297526599|ref|YP_003668623.1| - 9.1e-09 35.5 0.4 2.1e-07 31.1 0.4 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|297526599|ref|YP_003668623.1| - 1.2e-06 28.0 0.4 7.4e-06 25.4 0.2 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|297526599|ref|YP_003668623.1| - 5.2e-06 26.1 0.1 0.017 14.6 0.0 2.4 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|297526599|ref|YP_003668623.1| - 1.2e-05 25.2 1.0 0.075 12.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|297526599|ref|YP_003668623.1| - 0.00038 20.0 0.2 0.03 13.8 0.1 2.8 3 0 0 3 3 3 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|297526599|ref|YP_003668623.1| - 0.00082 18.7 0.0 0.0024 17.2 0.0 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_30 PF13604.6 gi|297526599|ref|YP_003668623.1| - 0.0039 16.9 0.1 0.01 15.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|297526599|ref|YP_003668623.1| - 0.011 15.0 0.1 0.02 14.2 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_16 PF13191.6 gi|297526599|ref|YP_003668623.1| - 0.014 15.8 0.0 0.042 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain ResIII PF04851.15 gi|297526599|ref|YP_003668623.1| - 0.024 14.7 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|297526599|ref|YP_003668623.1| - 0.05 13.3 0.0 0.13 12.0 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|297526599|ref|YP_003668623.1| - 0.052 12.8 0.0 0.084 12.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|297526599|ref|YP_003668623.1| - 0.058 13.0 0.1 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|297526599|ref|YP_003668623.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NB-ARC PF00931.22 gi|297526599|ref|YP_003668623.1| - 0.074 12.2 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain PIF1 PF05970.14 gi|297526599|ref|YP_003668623.1| - 0.076 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase PhoH PF02562.16 gi|297526599|ref|YP_003668623.1| - 0.093 12.2 0.1 0.52 9.7 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein Mu-like_Com PF10122.9 gi|297526599|ref|YP_003668623.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com SRP54 PF00448.22 gi|297526599|ref|YP_003668623.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|297526599|ref|YP_003668623.1| - 0.15 12.0 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase RuvB_N PF05496.12 gi|297526599|ref|YP_003668623.1| - 0.16 11.7 0.1 1.7 8.3 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MgtE PF01769.16 gi|297526600|ref|YP_003668624.1| - 6.8e-25 87.9 26.0 2.3e-14 53.8 5.0 3.7 4 0 0 4 4 4 2 Divalent cation transporter GHMP_kinases_N PF00288.26 gi|297526601|ref|YP_003668625.1| - 2.5e-19 69.3 0.1 4.9e-19 68.3 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|297526601|ref|YP_003668625.1| - 1.6e-10 41.2 0.2 6.9e-10 39.2 0.1 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal DUF43 PF01861.16 gi|297526602|ref|YP_003668626.1| - 0.18 11.0 0.9 0.23 10.6 0.9 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain PNP_phzG_C PF10590.9 gi|297526602|ref|YP_003668626.1| - 0.7 10.0 0.0 0.7 10.0 0.0 2.2 3 0 0 3 3 3 0 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Amidohydro_1 PF01979.20 gi|297526603|ref|YP_003668627.1| - 8.7e-28 97.6 0.0 1.1e-27 97.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|297526603|ref|YP_003668627.1| - 1.7e-05 24.5 0.0 3.7e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Amidohydrolase family CN_hydrolase PF00795.22 gi|297526605|ref|YP_003668629.1| - 4.7e-29 101.5 0.0 5.4e-29 101.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF2258 PF10015.9 gi|297526606|ref|YP_003668630.1| - 8.6e-27 93.1 3.5 8.6e-27 93.1 3.5 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) XisI PF08869.11 gi|297526606|ref|YP_003668630.1| - 0.09 13.1 1.6 0.11 12.8 1.6 1.1 1 0 0 1 1 1 0 XisI protein DUF4234 PF14018.6 gi|297526608|ref|YP_003668632.1| - 0.0015 18.6 0.1 0.0015 18.6 0.1 2.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4234) PBP_like PF12727.7 gi|297526609|ref|YP_003668633.1| - 5.3e-60 201.9 0.0 8.5e-60 201.2 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|297526609|ref|YP_003668633.1| - 1.7e-41 141.6 0.0 4e-41 140.4 0.1 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|297526609|ref|YP_003668633.1| - 1.3e-25 89.8 0.1 3.6e-25 88.3 0.0 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|297526609|ref|YP_003668633.1| - 1.7e-08 34.5 0.0 4.8e-08 33.1 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|297526609|ref|YP_003668633.1| - 7.3e-07 29.2 0.0 1.4e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|297526609|ref|YP_003668633.1| - 0.0077 15.9 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DEAD PF00270.29 gi|297526610|ref|YP_003668634.1| - 5.5e-23 81.6 0.0 1.5e-22 80.2 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|297526610|ref|YP_003668634.1| - 7.6e-12 45.7 0.3 5.4e-11 42.9 0.0 2.7 4 0 0 4 4 4 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|297526610|ref|YP_003668634.1| - 2.2e-09 37.5 0.0 4.1e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|297526610|ref|YP_003668634.1| - 4.2e-06 27.1 0.7 4.2e-05 23.9 0.2 2.8 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|297526610|ref|YP_003668634.1| - 0.00037 20.3 0.0 0.004 17.0 0.0 2.8 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda T2SSE PF00437.20 gi|297526610|ref|YP_003668634.1| - 0.12 11.4 0.1 0.23 10.5 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.27 gi|297526611|ref|YP_003668635.1| - 1.4e-29 103.3 0.0 3.5e-29 102.1 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|297526611|ref|YP_003668635.1| - 2.3e-08 34.2 0.3 0.00024 21.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526611|ref|YP_003668635.1| - 4.7e-07 29.5 0.1 0.00017 21.1 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain GvpG PF05120.12 gi|297526611|ref|YP_003668635.1| - 0.00011 22.1 0.8 0.00023 21.1 0.8 1.5 1 0 0 1 1 1 1 Gas vesicle protein G AAA_16 PF13191.6 gi|297526611|ref|YP_003668635.1| - 0.00014 22.3 0.1 0.00028 21.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|297526611|ref|YP_003668635.1| - 0.0017 18.2 1.0 0.0028 17.6 0.2 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|297526611|ref|YP_003668635.1| - 0.0049 16.6 0.1 0.011 15.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|297526611|ref|YP_003668635.1| - 0.007 16.1 4.2 0.13 11.9 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_23 PF13476.6 gi|297526611|ref|YP_003668635.1| - 0.027 15.0 4.0 0.085 13.4 0.2 2.2 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|297526611|ref|YP_003668635.1| - 0.028 13.2 0.0 0.04 12.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PI3K_P85_iSH2 PF16454.5 gi|297526611|ref|YP_003668635.1| - 0.029 14.0 0.4 0.042 13.4 0.4 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF1707 PF08044.11 gi|297526611|ref|YP_003668635.1| - 0.029 14.4 0.0 0.092 12.8 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) AAA_25 PF13481.6 gi|297526611|ref|YP_003668635.1| - 0.038 13.6 0.1 0.67 9.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain TAFH PF07531.14 gi|297526611|ref|YP_003668635.1| - 0.056 13.5 0.1 0.094 12.8 0.1 1.3 1 0 0 1 1 1 0 NHR1 homology to TAF T2SSE PF00437.20 gi|297526611|ref|YP_003668635.1| - 0.056 12.5 0.5 0.25 10.3 0.1 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|297526611|ref|YP_003668635.1| - 0.067 13.4 0.7 1.7 8.9 1.1 2.4 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|297526611|ref|YP_003668635.1| - 0.067 12.8 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|297526611|ref|YP_003668635.1| - 0.069 13.4 2.4 0.29 11.4 0.3 2.6 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|297526611|ref|YP_003668635.1| - 0.084 12.6 1.9 0.17 11.6 0.4 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|297526611|ref|YP_003668635.1| - 0.091 12.5 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein SHOCT PF09851.9 gi|297526611|ref|YP_003668635.1| - 0.16 11.8 0.9 0.34 10.7 0.9 1.6 1 0 0 1 1 1 0 Short C-terminal domain AAA_18 PF13238.6 gi|297526611|ref|YP_003668635.1| - 0.16 12.5 1.1 0.7 10.4 0.2 2.3 3 0 0 3 3 2 0 AAA domain RPN1_C PF18051.1 gi|297526611|ref|YP_003668635.1| - 0.19 11.8 0.6 2.4 8.3 0.0 2.5 2 0 0 2 2 2 0 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal Med9 PF07544.13 gi|297526611|ref|YP_003668635.1| - 0.19 11.9 1.0 0.36 10.9 1.0 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 AAA_24 PF13479.6 gi|297526611|ref|YP_003668635.1| - 0.19 11.4 0.6 0.38 10.4 0.6 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|297526611|ref|YP_003668635.1| - 0.68 8.5 2.9 45 2.5 0.0 2.9 3 0 0 3 3 3 0 AAA domain FtsX PF02687.21 gi|297526612|ref|YP_003668636.1| - 2.3e-06 28.0 27.2 7.9e-05 23.0 9.9 6.2 5 1 1 6 6 6 2 FtsX-like permease family TM_helix PF05552.12 gi|297526613|ref|YP_003668637.1| - 2.2e-16 59.6 16.8 2.9e-08 33.5 0.9 6.6 5 1 1 6 6 6 3 Conserved TM helix Phage_holin_2_4 PF16082.5 gi|297526613|ref|YP_003668637.1| - 0.19 11.5 0.2 0.19 11.5 0.2 3.1 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like Radical_SAM PF04055.21 gi|297526614|ref|YP_003668638.1| - 2.8e-17 63.6 0.1 2.9e-16 60.3 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily AsnC_trans_reg PF01037.21 gi|297526615|ref|YP_003668639.1| - 6.1e-10 38.9 0.6 6.9e-10 38.8 0.6 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|297526615|ref|YP_003668639.1| - 1.2e-05 25.2 0.1 1.6e-05 24.8 0.1 1.1 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|297526615|ref|YP_003668639.1| - 0.0029 18.2 0.7 0.97 10.1 0.0 2.2 2 0 0 2 2 2 2 ACT domain CBS PF00571.28 gi|297526615|ref|YP_003668639.1| - 0.05 14.0 0.6 0.12 12.9 0.6 1.8 1 1 0 1 1 1 0 CBS domain Orn_Arg_deC_N PF02784.16 gi|297526616|ref|YP_003668640.1| - 1.8e-24 86.5 0.0 2.9e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DUF5460 PF17544.2 gi|297526616|ref|YP_003668640.1| - 0.021 13.9 0.2 0.034 13.2 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5460) DUF357 PF04010.13 gi|297526617|ref|YP_003668641.1| - 7.4e-22 77.2 1.9 1.2e-21 76.6 1.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|297526617|ref|YP_003668641.1| - 2e-12 47.5 0.0 3e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like Urm1 PF09138.11 gi|297526617|ref|YP_003668641.1| - 0.14 12.5 0.3 0.37 11.2 0.1 1.8 2 0 0 2 2 2 0 Urm1 (Ubiquitin related modifier) FMN_red PF03358.15 gi|297526618|ref|YP_003668642.1| - 5.1e-26 91.3 0.0 8.2e-26 90.6 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|297526618|ref|YP_003668642.1| - 1e-11 44.9 0.0 2.3e-11 43.8 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin-like fold NTP_transferase PF00483.23 gi|297526619|ref|YP_003668643.1| - 6e-52 176.7 0.0 1.1e-51 175.9 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase PGM_PMM_I PF02878.16 gi|297526619|ref|YP_003668643.1| - 2.7e-22 79.0 0.4 1.6e-20 73.2 0.0 3.0 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Hexapep PF00132.24 gi|297526619|ref|YP_003668643.1| - 1.7e-15 56.0 16.3 2.7e-07 30.0 2.9 4.3 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) PGM_PMM_II PF02879.16 gi|297526619|ref|YP_003668643.1| - 1.6e-11 44.7 0.0 3.5e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NTP_transf_3 PF12804.7 gi|297526619|ref|YP_003668643.1| - 2.5e-10 41.0 0.0 4.1e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain PGM_PMM_III PF02880.16 gi|297526619|ref|YP_003668643.1| - 5.7e-10 39.4 0.0 1.2e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Hexapep_2 PF14602.6 gi|297526619|ref|YP_003668643.1| - 0.0087 15.8 0.5 0.0087 15.8 0.5 3.7 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|297526619|ref|YP_003668643.1| - 0.034 13.9 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|297526619|ref|YP_003668643.1| - 0.037 12.2 1.8 0.065 11.4 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|297526619|ref|YP_003668643.1| - 0.064 12.2 0.0 4.1 6.2 0.2 2.2 2 0 0 2 2 2 0 L-fucokinase PBP PF01161.20 gi|297526620|ref|YP_003668644.1| - 1.6e-35 122.3 0.0 2.1e-35 121.9 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein HAD_2 PF13419.6 gi|297526621|ref|YP_003668645.1| - 1.3e-16 61.2 0.0 1.5e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|297526621|ref|YP_003668645.1| - 1.3e-07 31.5 0.0 2.7e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|297526621|ref|YP_003668645.1| - 1.4e-05 25.5 0.0 1.5e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|297526621|ref|YP_003668645.1| - 0.0089 16.4 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase KASH PF10541.9 gi|297526623|ref|YP_003668647.1| - 1.9 8.8 9.1 0.22 11.8 3.5 2.1 2 0 0 2 2 2 0 Nuclear envelope localisation domain ABC_tran PF00005.27 gi|297526625|ref|YP_003668649.1| - 5e-18 65.9 0.0 8.2e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526625|ref|YP_003668649.1| - 6.7e-08 32.7 0.1 0.00077 19.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|297526625|ref|YP_003668649.1| - 1.1e-06 29.4 0.1 2.3e-06 28.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|297526625|ref|YP_003668649.1| - 3.8e-05 23.2 0.0 0.046 13.1 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|297526625|ref|YP_003668649.1| - 0.00026 21.4 0.1 0.0025 18.2 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|297526625|ref|YP_003668649.1| - 0.00055 19.6 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|297526625|ref|YP_003668649.1| - 0.0023 17.9 0.1 0.078 13.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|297526625|ref|YP_003668649.1| - 0.0031 17.8 0.1 0.018 15.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|297526625|ref|YP_003668649.1| - 0.0046 16.9 0.1 0.013 15.4 0.1 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|297526625|ref|YP_003668649.1| - 0.006 17.0 0.0 0.01 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|297526625|ref|YP_003668649.1| - 0.014 15.2 0.0 0.041 13.6 0.0 1.7 1 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|297526625|ref|YP_003668649.1| - 0.077 12.7 0.0 0.1 12.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|297526625|ref|YP_003668649.1| - 0.13 11.9 0.1 0.26 10.9 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|297526625|ref|YP_003668649.1| - 0.13 12.4 0.1 0.4 10.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|297526625|ref|YP_003668649.1| - 0.18 11.7 0.1 0.42 10.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Wyosine_form PF08608.12 gi|297526626|ref|YP_003668650.1| - 5.8e-22 77.8 0.0 1e-21 77.0 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|297526626|ref|YP_003668650.1| - 3.2e-21 76.4 0.1 2.2e-20 73.7 0.0 2.3 1 1 0 1 1 1 1 Radical SAM superfamily ParBc PF02195.18 gi|297526627|ref|YP_003668651.1| - 6.1e-12 45.7 0.2 3.2e-07 30.5 0.0 2.3 2 1 0 2 2 2 2 ParB-like nuclease domain ParBc_2 PF08857.11 gi|297526627|ref|YP_003668651.1| - 1.2e-05 25.5 0.1 0.0097 16.0 0.0 2.2 2 0 0 2 2 2 2 Putative ParB-like nuclease DUF1015 PF06245.11 gi|297526627|ref|YP_003668651.1| - 0.025 13.4 0.0 0.34 9.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1015) HTH_24 PF13412.6 gi|297526628|ref|YP_003668652.1| - 7.6e-08 31.8 0.4 1.8e-07 30.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|297526628|ref|YP_003668652.1| - 0.00022 21.1 0.4 0.00076 19.4 0.4 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|297526628|ref|YP_003668652.1| - 0.00093 19.1 0.0 0.0025 17.7 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|297526628|ref|YP_003668652.1| - 0.0018 18.1 0.0 0.0062 16.4 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|297526628|ref|YP_003668652.1| - 0.0026 18.1 0.0 0.014 15.8 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HSBP1 PF06825.12 gi|297526628|ref|YP_003668652.1| - 0.0029 17.4 0.3 0.0064 16.3 0.3 1.6 1 0 0 1 1 1 1 Heat shock factor binding protein 1 HTH_DeoR PF08220.12 gi|297526628|ref|YP_003668652.1| - 0.0056 16.4 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|297526628|ref|YP_003668652.1| - 0.0058 16.8 0.0 0.019 15.2 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|297526628|ref|YP_003668652.1| - 0.014 15.2 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|297526628|ref|YP_003668652.1| - 0.021 15.3 0.0 0.059 13.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|297526628|ref|YP_003668652.1| - 0.058 13.3 0.5 0.24 11.3 0.0 2.3 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain NBP1 PF08537.10 gi|297526628|ref|YP_003668652.1| - 0.07 12.5 7.2 0.11 11.9 7.2 1.2 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 CK2S PF15011.6 gi|297526628|ref|YP_003668652.1| - 0.071 13.0 1.4 0.11 12.4 1.4 1.2 1 0 0 1 1 1 0 Casein Kinase 2 substrate HTH_Crp_2 PF13545.6 gi|297526628|ref|YP_003668652.1| - 0.074 13.0 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|297526628|ref|YP_003668652.1| - 0.093 12.6 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.7 gi|297526628|ref|YP_003668652.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 MarR family V_ATPase_I PF01496.19 gi|297526628|ref|YP_003668652.1| - 0.57 8.0 4.6 0.72 7.7 4.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Ph1570 PF09638.10 gi|297526628|ref|YP_003668652.1| - 0.88 9.4 12.4 8.6 6.2 0.1 3.1 1 1 2 3 3 3 0 Ph1570 protein Thioredoxin_3 PF13192.6 gi|297526629|ref|YP_003668653.1| - 2.9e-15 56.1 0.2 6e-07 29.4 0.3 2.7 2 1 0 2 2 2 2 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|297526629|ref|YP_003668653.1| - 9.3e-07 29.3 2.8 0.041 14.3 0.1 3.4 2 2 0 2 2 2 2 Thioredoxin-like domain Thioredoxin PF00085.20 gi|297526629|ref|YP_003668653.1| - 1.3e-05 25.1 0.1 0.031 14.3 0.0 2.4 2 0 0 2 2 2 2 Thioredoxin Glutaredoxin PF00462.24 gi|297526629|ref|YP_003668653.1| - 0.00019 21.6 0.5 0.11 12.8 0.1 3.0 3 0 0 3 3 3 2 Glutaredoxin Thioredoxin_4 PF13462.6 gi|297526629|ref|YP_003668653.1| - 0.0053 16.9 0.1 8 6.6 0.0 2.9 2 1 1 3 3 3 3 Thioredoxin Thioredoxin_9 PF14595.6 gi|297526629|ref|YP_003668653.1| - 0.038 13.8 0.1 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 Thioredoxin TraF PF13728.6 gi|297526629|ref|YP_003668653.1| - 0.063 13.1 1.5 0.99 9.2 0.0 3.0 2 2 1 3 3 3 0 F plasmid transfer operon protein Jag_N PF14804.6 gi|297526629|ref|YP_003668653.1| - 0.59 10.5 3.4 3.3 8.1 0.0 2.9 3 0 0 3 3 3 0 Jag N-terminus Fe_dep_repr_C PF02742.15 gi|297526630|ref|YP_003668654.1| - 2.3e-17 62.8 0.1 4.6e-17 61.8 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|297526630|ref|YP_003668654.1| - 1.1e-13 51.1 0.0 2.3e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|297526630|ref|YP_003668654.1| - 2.2e-07 30.6 0.0 3.8e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|297526630|ref|YP_003668654.1| - 2.6e-07 30.3 0.1 5.9e-06 26.0 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain HTH_24 PF13412.6 gi|297526630|ref|YP_003668654.1| - 4.6e-06 26.1 0.7 7.4e-05 22.2 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|297526630|ref|YP_003668654.1| - 5.3e-06 26.1 0.0 8.5e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|297526630|ref|YP_003668654.1| - 1.5e-05 24.8 0.0 8.5e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|297526630|ref|YP_003668654.1| - 2e-05 24.4 0.0 0.00018 21.4 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|297526630|ref|YP_003668654.1| - 2.2e-05 24.8 0.0 4.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|297526630|ref|YP_003668654.1| - 5.1e-05 23.3 0.5 0.00028 21.0 0.1 2.1 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.20 gi|297526630|ref|YP_003668654.1| - 6.3e-05 22.8 0.0 0.0002 21.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|297526630|ref|YP_003668654.1| - 0.00025 20.9 0.2 0.0018 18.1 0.0 2.4 3 0 0 3 3 2 1 HTH domain IF2_N PF04760.15 gi|297526630|ref|YP_003668654.1| - 0.00043 20.0 0.1 0.0029 17.4 0.0 2.2 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region DUF4423 PF14394.6 gi|297526630|ref|YP_003668654.1| - 0.00054 19.7 0.0 0.0011 18.7 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_28 PF13518.6 gi|297526630|ref|YP_003668654.1| - 0.0013 18.8 0.0 0.0031 17.6 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|297526630|ref|YP_003668654.1| - 0.0016 18.3 0.0 0.0031 17.4 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|297526630|ref|YP_003668654.1| - 0.0017 18.7 0.0 0.019 15.3 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_45 PF14947.6 gi|297526630|ref|YP_003668654.1| - 0.0021 18.0 0.6 0.0035 17.3 0.1 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DUF3791 PF12668.7 gi|297526630|ref|YP_003668654.1| - 0.0022 18.0 0.3 0.038 14.0 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3791) Sigma70_r3 PF04539.16 gi|297526630|ref|YP_003668654.1| - 0.0049 16.9 0.1 0.0095 16.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 TrmB PF01978.19 gi|297526630|ref|YP_003668654.1| - 0.0051 16.7 0.3 0.018 14.9 0.2 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|297526630|ref|YP_003668654.1| - 0.0055 16.7 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|297526630|ref|YP_003668654.1| - 0.0066 16.1 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|297526630|ref|YP_003668654.1| - 0.007 16.1 0.1 0.038 13.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Mrr_N PF14338.6 gi|297526630|ref|YP_003668654.1| - 0.012 15.7 0.2 0.18 11.9 0.1 2.6 2 1 1 3 3 3 0 Mrr N-terminal domain B-block_TFIIIC PF04182.12 gi|297526630|ref|YP_003668654.1| - 0.021 15.0 0.5 0.036 14.2 0.1 1.6 2 0 0 2 2 1 0 B-block binding subunit of TFIIIC HTH_10 PF04967.12 gi|297526630|ref|YP_003668654.1| - 0.023 14.5 0.0 0.055 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_3 PF01381.22 gi|297526630|ref|YP_003668654.1| - 0.025 14.6 0.1 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix CENP-B_N PF04218.13 gi|297526630|ref|YP_003668654.1| - 0.057 13.1 0.0 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.6 gi|297526630|ref|YP_003668654.1| - 0.07 13.0 0.0 0.27 11.1 0.0 2.1 1 1 1 2 2 2 0 Homeodomain-like domain E3_binding PF02817.17 gi|297526630|ref|YP_003668654.1| - 0.089 13.1 0.1 0.18 12.2 0.1 1.5 1 0 0 1 1 1 0 e3 binding domain HTH_6 PF01418.17 gi|297526630|ref|YP_003668654.1| - 0.09 12.8 0.0 0.44 10.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Lip_prot_lig_C PF10437.9 gi|297526632|ref|YP_003668656.1| - 9e-07 28.8 2.3 1.2e-06 28.4 2.3 1.3 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 gi|297526633|ref|YP_003668657.1| - 9.8e-16 57.9 0.0 1.5e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family PspB PF06667.12 gi|297526633|ref|YP_003668657.1| - 0.034 14.2 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Phage shock protein B Radical_SAM PF04055.21 gi|297526634|ref|YP_003668658.1| - 6.7e-14 52.6 0.5 5.1e-11 43.2 0.0 2.7 2 1 0 2 2 2 2 Radical SAM superfamily CPSase_L_D3 PF02787.19 gi|297526634|ref|YP_003668658.1| - 0.021 15.2 0.1 0.06 13.7 0.0 1.7 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Chordopox_L2 PF05803.12 gi|297526634|ref|YP_003668658.1| - 0.15 12.0 1.0 1.6 8.6 0.3 2.5 2 0 0 2 2 2 0 Chordopoxvirus L2 protein Radical_SAM PF04055.21 gi|297526635|ref|YP_003668659.1| - 7.7e-12 45.9 0.1 2.3e-11 44.4 0.1 1.7 1 1 1 2 2 2 1 Radical SAM superfamily DUF4119 PF13494.6 gi|297526635|ref|YP_003668659.1| - 0.0077 16.3 0.0 0.022 14.9 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function, B. Theta Gene description (DUF4119) DC_STAMP PF07782.13 gi|297526636|ref|YP_003668660.1| - 0.17 11.7 2.4 1.8 8.4 0.9 2.2 2 0 0 2 2 2 0 DC-STAMP-like protein ABC_tran PF00005.27 gi|297526637|ref|YP_003668661.1| - 4.4e-44 150.3 0.0 1.7e-23 83.6 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|297526637|ref|YP_003668661.1| - 7.9e-17 62.0 6.9 2.4e-06 27.6 0.0 4.1 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|297526637|ref|YP_003668661.1| - 8.2e-10 39.5 2.8 0.00062 20.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|297526637|ref|YP_003668661.1| - 1.8e-09 37.2 0.5 0.00028 20.5 0.2 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|297526637|ref|YP_003668661.1| - 5.2e-08 33.5 0.1 6.2e-05 23.4 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|297526637|ref|YP_003668661.1| - 1.2e-06 28.9 1.4 0.00052 20.3 0.1 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|297526637|ref|YP_003668661.1| - 1.9e-06 27.5 1.8 0.24 10.8 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|297526637|ref|YP_003668661.1| - 3.6e-06 27.0 0.2 0.0033 17.3 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|297526637|ref|YP_003668661.1| - 4.6e-06 26.5 0.4 0.047 13.4 0.1 2.3 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|297526637|ref|YP_003668661.1| - 9.4e-06 25.6 0.9 0.018 14.9 0.1 2.4 2 0 0 2 2 2 2 NACHT domain cobW PF02492.19 gi|297526637|ref|YP_003668661.1| - 1.4e-05 24.7 3.4 0.01 15.4 0.5 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|297526637|ref|YP_003668661.1| - 2.3e-05 23.7 0.0 0.017 14.3 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain NTPase_1 PF03266.15 gi|297526637|ref|YP_003668661.1| - 4e-05 23.6 2.5 0.0071 16.3 0.3 2.4 2 0 0 2 2 2 1 NTPase MobB PF03205.14 gi|297526637|ref|YP_003668661.1| - 5.7e-05 23.0 2.5 0.0084 16.0 0.4 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|297526637|ref|YP_003668661.1| - 6.8e-05 22.9 2.3 0.0023 17.9 0.3 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|297526637|ref|YP_003668661.1| - 9.2e-05 22.2 1.1 0.022 14.5 0.0 3.0 4 0 0 4 4 3 1 AAA domain AAA_14 PF13173.6 gi|297526637|ref|YP_003668661.1| - 0.0001 22.3 0.5 0.067 13.2 0.0 3.0 4 0 0 4 4 2 1 AAA domain AAA_15 PF13175.6 gi|297526637|ref|YP_003668661.1| - 0.00016 21.5 3.5 0.19 11.4 0.1 3.0 2 1 1 3 3 3 2 AAA ATPase domain MeaB PF03308.16 gi|297526637|ref|YP_003668661.1| - 0.00018 20.6 0.1 0.22 10.4 0.1 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|297526637|ref|YP_003668661.1| - 0.0002 21.9 0.1 0.31 11.6 0.0 3.7 4 0 0 4 4 3 1 AAA domain TsaE PF02367.17 gi|297526637|ref|YP_003668661.1| - 0.00033 20.6 1.8 0.21 11.6 0.1 2.7 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|297526637|ref|YP_003668661.1| - 0.00073 19.3 0.3 0.17 11.6 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|297526637|ref|YP_003668661.1| - 0.00082 19.3 0.1 0.14 12.1 0.1 2.3 2 0 0 2 2 2 1 Rad17 P-loop domain T2SSE PF00437.20 gi|297526637|ref|YP_003668661.1| - 0.00095 18.3 3.1 0.017 14.2 0.5 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_19 PF13245.6 gi|297526637|ref|YP_003668661.1| - 0.0025 18.2 0.0 0.22 11.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|297526637|ref|YP_003668661.1| - 0.0027 17.0 0.2 0.039 13.2 0.1 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|297526637|ref|YP_003668661.1| - 0.003 17.8 0.1 0.48 10.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|297526637|ref|YP_003668661.1| - 0.0034 17.8 0.2 1.7 9.1 0.1 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|297526637|ref|YP_003668661.1| - 0.0061 16.0 0.3 0.11 12.0 0.0 2.1 2 0 0 2 2 2 1 PhoH-like protein RNA_helicase PF00910.22 gi|297526637|ref|YP_003668661.1| - 0.0068 16.8 0.1 1.2 9.6 0.1 2.5 2 0 0 2 2 2 1 RNA helicase Zeta_toxin PF06414.12 gi|297526637|ref|YP_003668661.1| - 0.008 15.5 0.2 3.6 6.8 0.1 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_27 PF13514.6 gi|297526637|ref|YP_003668661.1| - 0.009 15.6 0.3 3 7.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|297526637|ref|YP_003668661.1| - 0.0094 16.0 0.7 0.2 11.7 0.0 2.5 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|297526637|ref|YP_003668661.1| - 0.012 15.7 3.0 0.33 11.0 0.2 2.7 3 0 0 3 3 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|297526637|ref|YP_003668661.1| - 0.013 15.6 0.3 0.56 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|297526637|ref|YP_003668661.1| - 0.013 14.9 3.0 0.013 14.9 0.5 1.9 2 0 0 2 2 2 0 Poxvirus A32 protein Viral_helicase1 PF01443.18 gi|297526637|ref|YP_003668661.1| - 0.02 14.7 0.6 0.29 10.8 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATPase PF06745.13 gi|297526637|ref|YP_003668661.1| - 0.023 14.1 2.1 2.1 7.7 0.1 2.4 2 0 0 2 2 2 0 KaiC dNK PF01712.19 gi|297526637|ref|YP_003668661.1| - 0.024 14.5 2.1 2.3 8.0 0.2 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase FtsK_SpoIIIE PF01580.18 gi|297526637|ref|YP_003668661.1| - 0.025 14.0 1.1 0.084 12.2 0.2 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.6 gi|297526637|ref|YP_003668661.1| - 0.027 14.0 0.8 1.2 8.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain ATP_bind_2 PF03668.15 gi|297526637|ref|YP_003668661.1| - 0.035 13.4 0.4 0.39 10.0 0.0 2.2 2 0 0 2 2 2 0 P-loop ATPase protein family ATP-synt_ab PF00006.25 gi|297526637|ref|YP_003668661.1| - 0.036 13.7 0.0 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PduV-EutP PF10662.9 gi|297526637|ref|YP_003668661.1| - 0.064 13.0 0.8 1.9 8.2 0.1 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.18 gi|297526637|ref|YP_003668661.1| - 0.069 12.4 0.8 0.25 10.6 0.1 1.9 2 0 0 2 2 2 0 Septin PIF1 PF05970.14 gi|297526637|ref|YP_003668661.1| - 0.08 12.1 1.5 1.2 8.3 0.2 2.1 2 0 0 2 2 2 0 PIF1-like helicase ATP_bind_1 PF03029.17 gi|297526637|ref|YP_003668661.1| - 0.081 12.7 0.3 1.8 8.3 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.6 gi|297526637|ref|YP_003668661.1| - 0.081 13.2 0.0 11 6.3 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Roc PF08477.13 gi|297526637|ref|YP_003668661.1| - 0.083 13.1 0.5 4.9 7.4 0.1 2.8 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase Mg_chelatase PF01078.21 gi|297526637|ref|YP_003668661.1| - 0.091 12.1 0.2 3.9 6.8 0.1 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MukB PF04310.12 gi|297526637|ref|YP_003668661.1| - 0.11 12.3 0.1 0.38 10.5 0.0 1.8 2 0 0 2 2 2 0 MukB N-terminal AAA_5 PF07728.14 gi|297526637|ref|YP_003668661.1| - 0.11 12.5 0.3 2.3 8.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 gi|297526637|ref|YP_003668661.1| - 0.15 12.0 0.5 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|297526637|ref|YP_003668661.1| - 0.15 11.7 0.2 14 5.3 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase ABC_ATPase PF09818.9 gi|297526637|ref|YP_003668661.1| - 0.17 10.6 3.1 1.5 7.5 0.5 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SRP54 PF00448.22 gi|297526637|ref|YP_003668661.1| - 0.18 11.4 2.0 7.5 6.1 0.3 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|297526637|ref|YP_003668661.1| - 0.21 10.2 2.6 0.49 9.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|297526637|ref|YP_003668661.1| - 0.21 11.5 0.6 0.41 10.6 0.0 1.7 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit DLIC PF05783.11 gi|297526637|ref|YP_003668661.1| - 0.27 10.0 0.3 15 4.3 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) DUF3584 PF12128.8 gi|297526637|ref|YP_003668661.1| - 1.5 6.3 4.1 0.99 6.8 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DUF87 PF01935.17 gi|297526637|ref|YP_003668661.1| - 2.2 8.3 5.3 1.6 8.8 1.2 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain ECF-ribofla_trS PF07155.12 gi|297526638|ref|YP_003668662.1| - 9.6e-27 94.1 30.9 1.4e-20 74.0 23.5 2.1 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.12 gi|297526638|ref|YP_003668662.1| - 1.8e-05 24.3 12.6 1.8e-05 24.3 12.6 2.1 1 1 0 2 2 2 2 5TMR of 5TMR-LYT Phage_Coat_Gp8 PF05371.12 gi|297526638|ref|YP_003668662.1| - 0.13 12.0 0.2 0.13 12.0 0.2 2.8 3 0 0 3 3 3 0 Phage major coat protein, Gp8 PALP PF00291.25 gi|297526639|ref|YP_003668663.1| - 3.9e-69 233.3 0.0 6.8e-69 232.5 0.0 1.3 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme HTH_11 PF08279.12 gi|297526639|ref|YP_003668663.1| - 4.2e-05 23.4 0.1 8e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|297526639|ref|YP_003668663.1| - 8.9e-05 22.3 0.1 0.00016 21.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|297526639|ref|YP_003668663.1| - 0.00022 20.7 0.1 0.00054 19.5 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|297526639|ref|YP_003668663.1| - 0.0012 18.8 0.5 0.0039 17.1 0.2 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|297526639|ref|YP_003668663.1| - 0.0021 18.1 0.0 0.0047 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|297526639|ref|YP_003668663.1| - 0.0035 17.2 0.5 0.032 14.1 0.0 2.5 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|297526639|ref|YP_003668663.1| - 0.0064 16.4 0.1 0.014 15.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HypA PF01155.19 gi|297526639|ref|YP_003668663.1| - 0.017 15.1 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FUR PF01475.19 gi|297526639|ref|YP_003668663.1| - 0.026 14.7 0.1 0.14 12.3 0.0 2.1 2 0 0 2 2 2 0 Ferric uptake regulator family LexA_DNA_bind PF01726.16 gi|297526639|ref|YP_003668663.1| - 0.056 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_12 PF08461.10 gi|297526639|ref|YP_003668663.1| - 0.13 12.3 0.1 0.3 11.1 0.1 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain zinc_ribbon_2 PF13240.6 gi|297526639|ref|YP_003668663.1| - 0.26 11.1 5.6 0.46 10.3 5.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|297526639|ref|YP_003668663.1| - 0.62 9.5 3.0 0.49 9.9 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|297526639|ref|YP_003668663.1| - 0.83 9.4 4.6 1.5 8.6 4.6 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain AsnC_trans_reg PF01037.21 gi|297526640|ref|YP_003668664.1| - 2.3e-15 56.3 0.0 3.7e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|297526640|ref|YP_003668664.1| - 3.3e-13 49.0 0.3 5.5e-13 48.3 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|297526640|ref|YP_003668664.1| - 3.4e-11 42.8 0.1 6.9e-11 41.8 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|297526640|ref|YP_003668664.1| - 2.2e-05 24.1 0.1 5.7e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_5 PF01022.20 gi|297526640|ref|YP_003668664.1| - 3.4e-05 23.6 0.0 5.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|297526640|ref|YP_003668664.1| - 4.7e-05 23.2 0.0 9.6e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|297526640|ref|YP_003668664.1| - 5.1e-05 23.3 0.0 9.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|297526640|ref|YP_003668664.1| - 0.00032 20.6 0.0 0.00078 19.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|297526640|ref|YP_003668664.1| - 0.00099 19.2 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|297526640|ref|YP_003668664.1| - 0.0013 18.5 0.1 0.0027 17.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|297526640|ref|YP_003668664.1| - 0.0028 17.6 1.4 0.0038 17.1 0.4 1.8 2 0 0 2 2 2 1 HTH domain Sigma70_r4_2 PF08281.12 gi|297526640|ref|YP_003668664.1| - 0.0031 17.2 0.1 0.0054 16.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|297526640|ref|YP_003668664.1| - 0.011 15.6 0.1 0.025 14.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|297526640|ref|YP_003668664.1| - 0.018 14.8 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|297526640|ref|YP_003668664.1| - 0.024 14.8 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_WhiA PF02650.14 gi|297526640|ref|YP_003668664.1| - 0.032 14.5 1.2 5.4 7.4 0.1 2.5 3 0 0 3 3 3 0 WhiA C-terminal HTH domain PadR PF03551.14 gi|297526640|ref|YP_003668664.1| - 0.038 14.0 0.0 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|297526640|ref|YP_003668664.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|297526640|ref|YP_003668664.1| - 0.12 12.8 0.0 2.2 8.7 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator Sigma70_r4 PF04545.16 gi|297526640|ref|YP_003668664.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 AsnC_trans_reg2 PF17805.1 gi|297526640|ref|YP_003668664.1| - 0.18 12.0 0.0 0.51 10.5 0.0 1.7 2 0 0 2 2 2 0 AsnC-like ligand binding domain Gln-synt_C PF00120.24 gi|297526641|ref|YP_003668665.1| - 8.3e-120 399.9 0.0 9.5e-120 399.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|297526641|ref|YP_003668665.1| - 1.1e-14 53.9 0.0 2e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain HATPase_c_2 PF13581.6 gi|297526641|ref|YP_003668665.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain ERCC4 PF02732.15 gi|297526642|ref|YP_003668666.1| - 1.4e-17 64.3 0.0 2.1e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|297526642|ref|YP_003668666.1| - 4.4e-12 45.9 0.0 8.4e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|297526642|ref|YP_003668666.1| - 2.3e-09 37.7 0.0 5.8e-09 36.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|297526642|ref|YP_003668666.1| - 4.1e-07 29.5 1.4 2.1e-06 27.3 0.0 2.8 4 0 0 4 4 4 1 Helix-hairpin-helix motif VWA_3 PF13768.6 gi|297526642|ref|YP_003668666.1| - 0.019 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain HHH_3 PF12836.7 gi|297526642|ref|YP_003668666.1| - 0.027 14.7 0.2 0.16 12.3 0.0 2.3 1 1 0 2 2 2 0 Helix-hairpin-helix motif Pex2_Pex12 PF04757.14 gi|297526642|ref|YP_003668666.1| - 0.053 13.1 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region 5_3_exonuc PF01367.20 gi|297526642|ref|YP_003668666.1| - 0.15 12.7 0.0 4.6 7.9 0.0 2.4 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Glycos_transf_4 PF00953.21 gi|297526643|ref|YP_003668667.1| - 1.9e-31 109.2 16.3 1.9e-31 109.2 16.3 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 4 HMG-CoA_red PF00368.18 gi|297526644|ref|YP_003668668.1| - 6.5e-110 367.6 5.6 7.7e-110 367.3 5.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase F420_ligase PF01996.16 gi|297526645|ref|YP_003668669.1| - 0.089 12.1 0.0 0.13 11.6 0.0 1.4 1 1 0 1 1 1 0 F420-0:Gamma-glutamyl ligase UPRTase PF14681.6 gi|297526646|ref|YP_003668670.1| - 2.8e-47 160.9 0.0 3.3e-47 160.6 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|297526646|ref|YP_003668670.1| - 1.2e-11 44.4 0.1 2.7e-11 43.2 0.1 1.4 1 1 1 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|297526646|ref|YP_003668670.1| - 0.04 13.4 0.1 0.064 12.8 0.1 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase NTP_transf_3 PF12804.7 gi|297526647|ref|YP_003668671.1| - 2e-31 109.5 0.0 2.5e-31 109.2 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|297526647|ref|YP_003668671.1| - 5.8e-08 32.7 0.0 7.6e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|297526647|ref|YP_003668671.1| - 1.2e-07 31.8 0.0 1.3e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|297526647|ref|YP_003668671.1| - 0.00028 20.6 0.0 0.00038 20.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase ABC_tran PF00005.27 gi|297526648|ref|YP_003668672.1| - 4.2e-28 98.6 0.0 6.1e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526648|ref|YP_003668672.1| - 1.7e-11 44.5 0.2 6.7e-05 22.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|297526648|ref|YP_003668672.1| - 0.00088 19.8 1.2 0.0014 19.2 1.2 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|297526648|ref|YP_003668672.1| - 0.001 18.6 0.1 0.62 9.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|297526648|ref|YP_003668672.1| - 0.0058 16.4 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|297526648|ref|YP_003668672.1| - 0.014 15.1 0.0 0.019 14.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|297526648|ref|YP_003668672.1| - 0.022 14.4 0.1 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|297526648|ref|YP_003668672.1| - 0.025 15.0 0.0 0.049 14.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|297526648|ref|YP_003668672.1| - 0.053 13.4 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|297526648|ref|YP_003668672.1| - 0.067 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|297526648|ref|YP_003668672.1| - 0.1 12.9 0.1 0.2 11.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|297526648|ref|YP_003668672.1| - 0.22 11.9 0.2 0.33 11.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|297526649|ref|YP_003668673.1| - 7.7e-23 81.1 37.8 9.7e-23 80.8 37.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|297526649|ref|YP_003668673.1| - 8.1e-13 48.3 27.8 1.4e-12 47.5 27.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|297526649|ref|YP_003668673.1| - 5.6e-06 25.9 32.4 0.00014 21.4 23.1 3.6 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|297526649|ref|YP_003668673.1| - 0.00056 19.9 10.8 0.00056 19.9 10.8 3.1 2 1 1 3 3 3 1 ABC-2 family transporter protein HKR_ArcB_TM PF18415.1 gi|297526649|ref|YP_003668673.1| - 0.17 12.7 0.2 0.17 12.7 0.2 3.6 4 0 0 4 4 4 0 Histidine kinase receptor ArcB trans-membrane domain Peptidase_M17 PF00883.21 gi|297526651|ref|YP_003668675.1| - 9.3e-119 396.3 0.0 1.3e-118 395.9 0.0 1.2 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 gi|297526651|ref|YP_003668675.1| - 9e-10 38.5 0.0 2.1e-09 37.3 0.0 1.6 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain PhoU_div PF01865.16 gi|297526652|ref|YP_003668676.1| - 1.3e-31 109.6 11.7 1.4e-31 109.5 11.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|297526652|ref|YP_003668676.1| - 1.9e-06 28.3 11.7 0.00035 21.0 2.3 2.4 2 1 0 2 2 2 2 PhoU domain DUF241 PF03087.14 gi|297526652|ref|YP_003668676.1| - 0.018 14.9 0.4 0.018 14.9 0.4 1.6 2 0 0 2 2 2 0 Arabidopsis protein of unknown function Glyco_hydro_57 PF03065.15 gi|297526652|ref|YP_003668676.1| - 0.12 11.6 0.3 0.19 10.9 0.2 1.5 1 1 0 1 1 1 0 Glycosyl hydrolase family 57 TrmB PF01978.19 gi|297526653|ref|YP_003668677.1| - 1.6e-07 31.1 0.2 3.2e-07 30.1 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|297526653|ref|YP_003668677.1| - 0.00087 19.0 0.3 0.17 11.7 0.1 2.2 2 0 0 2 2 2 2 IclR helix-turn-helix domain PC4 PF02229.16 gi|297526653|ref|YP_003668677.1| - 0.011 15.3 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional Coactivator p15 (PC4) Rrf2 PF02082.20 gi|297526653|ref|YP_003668677.1| - 0.014 15.7 0.3 1.3 9.4 0.1 2.2 2 0 0 2 2 2 0 Transcriptional regulator Sulfolobus_pRN PF05584.11 gi|297526653|ref|YP_003668677.1| - 0.044 13.8 0.4 0.094 12.8 0.4 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein PI-TkoII_IV PF18714.1 gi|297526653|ref|YP_003668677.1| - 0.082 12.4 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase II intein Domain IV HTH_5 PF01022.20 gi|297526653|ref|YP_003668677.1| - 0.097 12.6 0.0 0.33 10.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GnsAB_toxin PF08178.11 gi|297526653|ref|YP_003668677.1| - 0.26 11.2 1.5 11 6.1 0.1 2.8 2 1 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system RHH_1 PF01402.21 gi|297526654|ref|YP_003668678.1| - 0.0012 18.7 0.0 0.002 18.0 0.0 1.5 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family Ribosomal_L13e PF01294.18 gi|297526655|ref|YP_003668679.1| - 1.4e-11 44.6 0.0 1.4e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e DUF211 PF02680.14 gi|297526656|ref|YP_003668680.1| - 2.8e-34 117.1 7.8 3.4e-34 116.8 7.8 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Metallophos_2 PF12850.7 gi|297526659|ref|YP_003668683.1| - 3.8e-17 63.0 0.0 4.7e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|297526659|ref|YP_003668683.1| - 9.4e-08 32.8 0.5 2.7e-05 24.8 0.2 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase NfeD PF01957.18 gi|297526660|ref|YP_003668684.1| - 5.7e-12 45.8 0.1 2.2e-11 44.0 0.1 2.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|297526660|ref|YP_003668684.1| - 0.0018 18.2 0.1 0.0028 17.5 0.1 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|297526660|ref|YP_003668684.1| - 0.0051 15.9 0.6 0.0094 15.0 0.6 1.4 1 0 0 1 1 1 1 Serine dehydrogenase proteinase TrkA_C PF02080.21 gi|297526660|ref|YP_003668684.1| - 0.085 12.7 0.1 0.31 10.9 0.1 1.9 1 1 0 1 1 1 0 TrkA-C domain SLATT_6 PF18169.1 gi|297526660|ref|YP_003668684.1| - 4.7 6.8 6.3 8.4 6.0 5.8 1.7 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 Band_7 PF01145.25 gi|297526661|ref|YP_003668685.1| - 9.8e-36 123.4 2.8 1.2e-35 123.1 2.8 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|297526661|ref|YP_003668685.1| - 0.0003 20.6 0.2 0.00055 19.7 0.2 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family HD PF01966.22 gi|297526662|ref|YP_003668686.1| - 6.2e-14 52.3 0.9 1.2e-12 48.2 0.1 2.0 2 0 0 2 2 2 1 HD domain CCDC84 PF14968.6 gi|297526662|ref|YP_003668686.1| - 0.48 10.0 1.5 0.7 9.5 1.5 1.1 1 0 0 1 1 1 0 Coiled coil protein 84 ABC_tran PF00005.27 gi|297526663|ref|YP_003668687.1| - 1.1e-33 116.6 0.0 2.8e-33 115.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|297526663|ref|YP_003668687.1| - 2.8e-09 37.2 0.2 2e-05 24.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|297526663|ref|YP_003668687.1| - 4.5e-06 26.7 0.0 0.00015 21.9 0.0 2.5 2 0 0 2 2 2 1 TOBE domain AAA_28 PF13521.6 gi|297526663|ref|YP_003668687.1| - 0.0025 18.1 0.1 0.65 10.2 0.0 3.3 4 0 0 4 4 4 1 AAA domain Rad17 PF03215.15 gi|297526663|ref|YP_003668687.1| - 0.0027 17.6 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|297526663|ref|YP_003668687.1| - 0.0027 18.0 0.0 0.0063 16.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA PF00004.29 gi|297526663|ref|YP_003668687.1| - 0.0062 17.0 0.1 0.1 13.0 0.0 2.5 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|297526663|ref|YP_003668687.1| - 0.011 16.0 2.2 0.17 12.2 2.2 2.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|297526663|ref|YP_003668687.1| - 0.018 14.5 0.2 0.095 12.1 0.2 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|297526663|ref|YP_003668687.1| - 0.021 15.3 0.3 0.045 14.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|297526663|ref|YP_003668687.1| - 0.061 12.7 0.3 0.53 9.7 0.2 2.0 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 gi|297526663|ref|YP_003668687.1| - 0.081 13.3 0.6 0.14 12.5 0.2 1.8 2 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|297526663|ref|YP_003668687.1| - 0.17 11.6 0.0 0.79 9.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|297526663|ref|YP_003668687.1| - 0.17 11.8 0.0 0.45 10.4 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase BPD_transp_1 PF00528.22 gi|297526664|ref|YP_003668688.1| - 4.3e-20 72.2 44.1 1.7e-11 44.2 21.2 4.7 4 1 1 5 5 5 2 Binding-protein-dependent transport system inner membrane component Sterol_MT_C PF08498.10 gi|297526664|ref|YP_003668688.1| - 0.018 15.4 0.0 0.051 13.9 0.0 1.7 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal SBP_bac_8 PF13416.6 gi|297526665|ref|YP_003668689.1| - 2.3e-18 67.0 2.7 5.7e-18 65.7 2.7 1.6 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|297526665|ref|YP_003668689.1| - 3.5e-18 65.9 0.3 5.2e-18 65.3 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|297526665|ref|YP_003668689.1| - 5.3e-14 52.9 6.7 1.7e-13 51.2 6.7 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|297526665|ref|YP_003668689.1| - 9.6e-05 22.2 0.5 0.00029 20.7 0.0 2.1 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein Mucin PF01456.17 gi|297526665|ref|YP_003668689.1| - 0.0042 17.1 39.7 0.0093 16.0 39.7 1.5 1 0 0 1 1 1 1 Mucin-like glycoprotein AJAP1_PANP_C PF15298.6 gi|297526665|ref|YP_003668689.1| - 0.0097 16.1 21.3 0.018 15.3 21.3 1.3 1 0 0 1 1 1 1 AJAP1/PANP C-terminus DUF4366 PF14283.6 gi|297526665|ref|YP_003668689.1| - 0.017 15.2 0.4 0.03 14.4 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) MGC-24 PF05283.11 gi|297526665|ref|YP_003668689.1| - 0.028 14.9 10.7 0.048 14.1 10.7 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin RIFIN PF02009.16 gi|297526665|ref|YP_003668689.1| - 0.034 14.0 2.9 0.045 13.6 2.6 1.4 1 1 0 1 1 1 0 Rifin Cloacin_immun PF03513.14 gi|297526665|ref|YP_003668689.1| - 0.048 14.0 0.1 4 7.9 0.1 2.5 2 0 0 2 2 2 0 Cloacin immunity protein TMEM154 PF15102.6 gi|297526665|ref|YP_003668689.1| - 1.5 8.7 12.1 3.5 7.5 12.1 1.6 1 0 0 1 1 1 0 TMEM154 protein family Glucodextran_C PF09985.9 gi|297526666|ref|YP_003668690.1| - 3.5e-77 258.9 0.6 6.3e-77 258.1 0.6 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase ABC_transp_aux PF09822.9 gi|297526666|ref|YP_003668690.1| - 1.7e-10 40.8 0.0 0.00045 19.8 0.0 2.3 2 0 0 2 2 2 2 ABC-type uncharacterized transport system RIFIN PF02009.16 gi|297526666|ref|YP_003668690.1| - 0.003 17.5 2.1 0.0043 17.0 2.1 1.2 1 0 0 1 1 1 1 Rifin Stevor PF17410.2 gi|297526666|ref|YP_003668690.1| - 0.086 12.4 0.9 0.14 11.7 0.9 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF4350 PF14258.6 gi|297526666|ref|YP_003668690.1| - 0.11 13.0 0.0 0.11 13.0 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) DUF5305 PF17231.2 gi|297526666|ref|YP_003668690.1| - 7.5 5.9 16.7 17 4.7 16.7 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Metallophos PF00149.28 gi|297526667|ref|YP_003668691.1| - 1.3e-18 68.3 2.8 2.6e-18 67.3 2.8 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|297526667|ref|YP_003668691.1| - 0.0021 18.3 0.0 0.0078 16.4 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain RIFIN PF02009.16 gi|297526667|ref|YP_003668691.1| - 0.046 13.6 1.0 0.066 13.1 1.0 1.2 1 0 0 1 1 1 0 Rifin Pex14_N PF04695.13 gi|297526667|ref|YP_003668691.1| - 0.55 10.9 13.2 1.2 9.7 13.2 1.6 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Hjc PF01870.18 gi|297526668|ref|YP_003668692.1| - 1.8e-27 95.1 0.3 2.6e-27 94.6 0.3 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|297526668|ref|YP_003668692.1| - 0.018 14.6 0.1 0.083 12.5 0.1 2.1 1 1 0 1 1 1 0 REase_AHJR-like T2SSE PF00437.20 gi|297526670|ref|YP_003668694.1| - 7.8e-10 38.3 0.0 1.3e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|297526670|ref|YP_003668694.1| - 3.3e-05 24.4 0.0 8.8e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 PIN domain AAA_16 PF13191.6 gi|297526670|ref|YP_003668694.1| - 0.00043 20.7 0.0 0.001 19.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|297526670|ref|YP_003668694.1| - 0.00096 18.9 0.0 0.0026 17.5 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|297526670|ref|YP_003668694.1| - 0.0011 19.5 0.0 0.0031 18.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|297526670|ref|YP_003668694.1| - 0.0024 18.3 0.6 0.016 15.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 gi|297526670|ref|YP_003668694.1| - 0.0033 16.8 0.0 0.0066 15.8 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain SRP54 PF00448.22 gi|297526670|ref|YP_003668694.1| - 0.0045 16.7 0.2 0.008 15.8 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain RuvB_N PF05496.12 gi|297526670|ref|YP_003668694.1| - 0.0051 16.6 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|297526670|ref|YP_003668694.1| - 0.0072 15.9 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|297526670|ref|YP_003668694.1| - 0.0088 15.3 0.1 0.019 14.3 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin ResIII PF04851.15 gi|297526670|ref|YP_003668694.1| - 0.0096 15.9 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_28 PF13521.6 gi|297526670|ref|YP_003668694.1| - 0.0097 16.2 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|297526670|ref|YP_003668694.1| - 0.011 15.9 0.6 0.12 12.5 0.0 2.7 3 0 0 3 3 2 0 AAA domain NACHT PF05729.12 gi|297526670|ref|YP_003668694.1| - 0.013 15.4 0.1 0.027 14.4 0.1 1.5 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|297526670|ref|YP_003668694.1| - 0.014 15.3 0.1 0.072 13.0 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.6 gi|297526670|ref|YP_003668694.1| - 0.015 15.3 0.0 0.041 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|297526670|ref|YP_003668694.1| - 0.017 15.1 0.0 0.046 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.18 gi|297526670|ref|YP_003668694.1| - 0.017 14.5 0.0 0.39 10.0 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family TsaE PF02367.17 gi|297526670|ref|YP_003668694.1| - 0.019 15.0 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|297526670|ref|YP_003668694.1| - 0.02 14.7 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|297526670|ref|YP_003668694.1| - 0.023 13.7 0.0 0.045 12.7 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PrpR_N PF06506.11 gi|297526670|ref|YP_003668694.1| - 0.028 14.0 0.0 0.074 12.6 0.0 1.7 1 0 0 1 1 1 0 Propionate catabolism activator RNA_helicase PF00910.22 gi|297526670|ref|YP_003668694.1| - 0.046 14.1 0.0 0.095 13.1 0.0 1.6 1 1 0 1 1 1 0 RNA helicase KTI12 PF08433.10 gi|297526670|ref|YP_003668694.1| - 0.049 13.1 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|297526670|ref|YP_003668694.1| - 0.053 13.2 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|297526670|ref|YP_003668694.1| - 0.058 13.1 0.1 0.15 11.7 0.0 1.7 1 1 1 2 2 2 0 Thymidylate kinase AAA_22 PF13401.6 gi|297526670|ref|YP_003668694.1| - 0.062 13.6 0.0 0.25 11.6 0.0 2.0 2 0 0 2 2 1 0 AAA domain DUF815 PF05673.13 gi|297526670|ref|YP_003668694.1| - 0.09 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|297526670|ref|YP_003668694.1| - 0.091 13.3 0.0 0.24 11.9 0.0 1.7 2 0 0 2 2 1 0 ABC transporter AAA_24 PF13479.6 gi|297526670|ref|YP_003668694.1| - 0.092 12.5 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|297526670|ref|YP_003668694.1| - 0.1 13.0 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|297526670|ref|YP_003668694.1| - 0.1 12.3 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Metallophos PF00149.28 gi|297526671|ref|YP_003668695.1| - 4.3e-05 24.1 2.9 0.00011 22.8 2.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|297526671|ref|YP_003668695.1| - 0.015 15.5 0.0 0.039 14.2 0.0 1.6 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain cobW PF02492.19 gi|297526672|ref|YP_003668696.1| - 0.00022 20.8 0.0 0.0014 18.2 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ParA PF10609.9 gi|297526672|ref|YP_003668696.1| - 0.0005 19.6 0.1 0.0011 18.5 0.1 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|297526672|ref|YP_003668696.1| - 0.003 17.6 1.5 0.012 15.7 1.5 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|297526672|ref|YP_003668696.1| - 0.0066 16.3 0.2 0.035 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|297526672|ref|YP_003668696.1| - 0.071 12.1 2.0 0.64 8.9 0.4 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB LpxK PF02606.14 gi|297526672|ref|YP_003668696.1| - 0.12 11.5 0.1 1.9 7.5 0.1 2.5 3 0 0 3 3 3 0 Tetraacyldisaccharide-1-P 4'-kinase PRK PF00485.18 gi|297526672|ref|YP_003668696.1| - 0.12 12.1 0.1 0.81 9.4 0.0 2.1 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DapB_N PF01113.20 gi|297526672|ref|YP_003668696.1| - 0.12 12.5 0.6 2.9 8.0 0.0 3.0 4 0 0 4 4 4 0 Dihydrodipicolinate reductase, N-terminus Zeta_toxin PF06414.12 gi|297526672|ref|YP_003668696.1| - 0.18 11.0 0.1 0.33 10.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin MipZ PF09140.11 gi|297526672|ref|YP_003668696.1| - 0.24 10.6 0.7 0.49 9.6 0.4 1.6 2 0 0 2 2 2 0 ATPase MipZ PPDK_N PF01326.19 gi|297526673|ref|YP_003668697.1| - 4.4e-121 404.2 0.1 6.8e-121 403.5 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|297526673|ref|YP_003668697.1| - 5.9e-93 311.2 0.0 8.8e-93 310.6 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|297526673|ref|YP_003668697.1| - 2.3e-29 100.9 0.9 5.3e-29 99.7 0.9 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Epimerase_2 PF02350.19 gi|297526673|ref|YP_003668697.1| - 0.08 11.8 0.1 0.16 10.8 0.1 1.4 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase CPSase_L_D2 PF02786.17 gi|297526674|ref|YP_003668698.1| - 4.8e-68 228.8 0.1 6.9e-68 228.3 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.19 gi|297526674|ref|YP_003668698.1| - 1.8e-38 130.9 0.0 3.6e-38 130.0 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_carb_N PF00289.22 gi|297526674|ref|YP_003668698.1| - 2.7e-33 114.8 0.0 7e-33 113.5 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain ATP-grasp PF02222.22 gi|297526674|ref|YP_003668698.1| - 2e-09 37.3 0.0 4.4e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|297526674|ref|YP_003668698.1| - 6.5e-08 32.3 0.0 1.3e-07 31.4 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|297526674|ref|YP_003668698.1| - 1.9e-07 30.9 0.0 4.1e-07 29.8 0.0 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|297526674|ref|YP_003668698.1| - 5.5e-06 26.3 0.0 9.5e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|297526674|ref|YP_003668698.1| - 0.00073 19.6 0.0 0.0047 17.0 0.0 2.3 3 0 0 3 3 3 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|297526674|ref|YP_003668698.1| - 0.0029 16.9 0.0 0.0063 15.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 gi|297526674|ref|YP_003668698.1| - 0.0083 15.5 0.0 0.03 13.7 0.0 1.9 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_5 PF13549.6 gi|297526674|ref|YP_003668698.1| - 0.009 15.5 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|297526674|ref|YP_003668698.1| - 0.037 13.6 0.1 0.16 11.6 0.0 2.1 2 1 0 2 2 2 0 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|297526674|ref|YP_003668698.1| - 0.06 12.9 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|297526674|ref|YP_003668698.1| - 0.064 12.5 0.0 0.17 11.1 0.0 1.6 2 0 0 2 2 2 0 YheC/D like ATP-grasp GHMP_kinases_C PF08544.13 gi|297526674|ref|YP_003668698.1| - 0.15 12.5 0.0 2.1 8.7 0.0 2.6 2 0 0 2 2 2 0 GHMP kinases C terminal Prok-JAB PF14464.6 gi|297526675|ref|YP_003668699.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain Peptidase_M20 PF01546.28 gi|297526676|ref|YP_003668700.1| - 1.6e-38 132.5 0.0 3.1e-38 131.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|297526676|ref|YP_003668700.1| - 1.1e-16 60.6 0.0 2.6e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|297526676|ref|YP_003668700.1| - 0.0013 18.4 0.0 0.0037 17.0 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M28 THUMP PF02926.17 gi|297526676|ref|YP_003668700.1| - 0.14 12.2 0.6 2.8 8.1 0.1 2.3 2 0 0 2 2 2 0 THUMP domain NTPase_1 PF03266.15 gi|297526677|ref|YP_003668701.1| - 0.19 11.6 0.8 0.46 10.4 0.4 1.6 1 1 0 1 1 1 0 NTPase Fer4_13 PF13370.6 gi|297526678|ref|YP_003668702.1| - 1.3e-21 76.8 2.7 1.7e-21 76.5 2.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|297526678|ref|YP_003668702.1| - 6.2e-15 55.7 2.8 7.2e-15 55.5 2.8 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|297526678|ref|YP_003668702.1| - 0.0011 19.0 7.4 0.0015 18.5 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.27 gi|297526678|ref|YP_003668702.1| - 0.017 14.9 6.7 0.036 13.9 0.9 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297526678|ref|YP_003668702.1| - 0.017 15.7 3.8 0.22 12.1 4.2 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|297526678|ref|YP_003668702.1| - 0.061 13.9 0.3 0.061 13.9 0.3 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297526678|ref|YP_003668702.1| - 0.094 12.8 3.9 1.1 9.4 4.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain BPD_transp_2 PF02653.16 gi|297526680|ref|YP_003668704.1| - 7.1e-29 100.8 38.4 9.1e-29 100.4 38.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component TMEM141 PF15110.6 gi|297526680|ref|YP_003668704.1| - 0.065 13.8 1.5 0.065 13.8 1.5 3.3 3 1 0 4 4 4 0 TMEM141 protein family BPD_transp_2 PF02653.16 gi|297526681|ref|YP_003668705.1| - 6.1e-27 94.4 36.5 6.1e-27 94.4 36.5 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|297526682|ref|YP_003668706.1| - 3.6e-42 144.1 0.1 1.7e-29 103.1 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|297526682|ref|YP_003668706.1| - 2.9e-05 24.0 0.1 0.0029 17.5 0.1 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|297526682|ref|YP_003668706.1| - 0.0027 17.4 0.1 0.015 15.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|297526682|ref|YP_003668706.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|297526682|ref|YP_003668706.1| - 0.013 16.0 0.2 0.027 14.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|297526682|ref|YP_003668706.1| - 0.06 13.1 0.6 4.9 6.8 0.1 2.4 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|297526682|ref|YP_003668706.1| - 0.075 12.9 0.0 0.25 11.2 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase AAA_14 PF13173.6 gi|297526682|ref|YP_003668706.1| - 0.16 12.0 0.6 0.9 9.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|297526682|ref|YP_003668706.1| - 0.2 11.2 0.0 0.33 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Bmp PF02608.14 gi|297526683|ref|YP_003668707.1| - 1.5e-35 122.6 2.1 2e-35 122.3 2.1 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF1122 PF06557.11 gi|297526685|ref|YP_003668709.1| - 6.6e-08 32.2 0.3 1.5e-07 31.0 0.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1122) Cation_efflux PF01545.21 gi|297526687|ref|YP_003668711.1| - 6.4e-13 48.9 25.9 8.5e-13 48.5 25.9 1.1 1 0 0 1 1 1 1 Cation efflux family DNA_pol_B_palm PF14792.6 gi|297526687|ref|YP_003668711.1| - 0.12 12.5 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm Amidohydro_1 PF01979.20 gi|297526688|ref|YP_003668712.1| - 1.1e-23 84.2 0.0 1.5e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|297526688|ref|YP_003668712.1| - 1.9e-13 50.7 0.1 3.2e-08 33.5 0.0 2.8 2 1 1 3 3 3 2 Amidohydrolase family TatD_DNase PF01026.21 gi|297526688|ref|YP_003668712.1| - 0.0036 16.7 0.1 0.012 15.0 0.1 1.8 1 1 0 1 1 1 1 TatD related DNase Trep_Strep PF09605.10 gi|297526689|ref|YP_003668713.1| - 6.2 6.8 17.1 5.6 6.9 5.3 2.1 1 1 1 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) UPF0047 PF01894.17 gi|297526690|ref|YP_003668714.1| - 2.2e-11 43.9 0.0 3.5e-06 27.2 0.0 2.1 1 1 1 2 2 2 2 Uncharacterised protein family UPF0047 DUF1939 PF09154.10 gi|297526690|ref|YP_003668714.1| - 0.011 15.8 0.1 0.019 15.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1939) DUF5081 PF16887.5 gi|297526690|ref|YP_003668714.1| - 0.05 12.7 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5081) UPF0047 PF01894.17 gi|297526691|ref|YP_003668715.1| - 7.4e-10 39.0 0.2 9.2e-10 38.7 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF4064 PF13273.6 gi|297526692|ref|YP_003668716.1| - 6e-10 39.3 21.0 6e-10 39.3 21.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF4064) DUF5518 PF17647.1 gi|297526692|ref|YP_003668716.1| - 0.0076 16.4 20.1 0.54 10.4 0.5 2.0 2 0 0 2 2 2 2 Family of unknown function (DUF5518) DUF973 PF06157.11 gi|297526692|ref|YP_003668716.1| - 0.013 14.6 12.6 0.014 14.5 12.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) ATG22 PF11700.8 gi|297526692|ref|YP_003668716.1| - 1.8 7.1 9.4 2 6.9 9.4 1.2 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like DUF485 PF04341.12 gi|297526692|ref|YP_003668716.1| - 5.2 7.1 6.9 10 6.1 6.9 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF485 FUSC-like PF12805.7 gi|297526692|ref|YP_003668716.1| - 9.3 5.2 8.5 13 4.8 8.5 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS NTP_transferase PF00483.23 gi|297526693|ref|YP_003668717.1| - 6.1e-41 140.6 0.0 8e-41 140.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|297526693|ref|YP_003668717.1| - 9.1e-11 42.4 0.0 1.2e-10 42.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|297526693|ref|YP_003668717.1| - 0.0015 18.1 8.1 0.0092 15.7 0.5 4.5 3 2 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|297526693|ref|YP_003668717.1| - 0.011 15.5 0.1 0.031 14.0 0.1 1.8 1 0 0 1 1 1 0 Hexapeptide repeat of succinyl-transferase CTP_transf_3 PF02348.19 gi|297526693|ref|YP_003668717.1| - 0.077 12.9 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Cytidylyltransferase DUF321 PF03778.13 gi|297526693|ref|YP_003668717.1| - 0.29 10.8 2.9 0.55 9.9 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF321) PGM_PMM_II PF02879.16 gi|297526694|ref|YP_003668718.1| - 2e-18 66.9 0.0 1.3e-17 64.2 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_I PF02878.16 gi|297526694|ref|YP_003668718.1| - 1.6e-10 40.8 0.0 2.9e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|297526694|ref|YP_003668718.1| - 0.072 13.3 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMD PF02627.20 gi|297526695|ref|YP_003668719.1| - 8.5e-22 77.0 0.2 1e-21 76.8 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family SinI PF08671.10 gi|297526695|ref|YP_003668719.1| - 0.00018 21.3 4.7 0.0022 17.7 0.3 2.8 3 0 0 3 3 3 2 Anti-repressor SinI DegV PF02645.16 gi|297526695|ref|YP_003668719.1| - 0.072 12.4 0.0 0.092 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 PA26 PF04636.13 gi|297526695|ref|YP_003668719.1| - 0.086 11.7 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) tRNA-synt_1 PF00133.22 gi|297526696|ref|YP_003668720.1| - 5.8e-66 223.0 0.3 3.2e-65 220.6 0.3 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|297526696|ref|YP_003668720.1| - 3.2e-23 82.4 6.0 1.5e-22 80.2 6.0 2.1 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|297526696|ref|YP_003668720.1| - 3.7e-23 81.9 5.5 4.4e-12 45.4 0.0 4.6 4 1 1 5 5 5 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|297526696|ref|YP_003668720.1| - 3.9e-11 42.8 0.2 8.4e-06 25.3 0.1 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|297526696|ref|YP_003668720.1| - 6.8e-05 22.0 0.0 6.8e-05 22.0 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|297526696|ref|YP_003668720.1| - 0.00021 20.8 0.0 0.015 14.8 0.0 2.5 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1b PF00579.25 gi|297526696|ref|YP_003668720.1| - 0.014 14.7 0.0 0.03 13.6 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) tRNA-synt_1d PF00750.19 gi|297526696|ref|YP_003668720.1| - 0.064 12.2 0.0 0.36 9.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (R) CcmH PF03918.14 gi|297526696|ref|YP_003668720.1| - 0.077 12.3 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 Cytochrome C biogenesis protein ABC_tran PF00005.27 gi|297526697|ref|YP_003668721.1| - 2.7e-18 66.8 0.0 3.7e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|297526697|ref|YP_003668721.1| - 2.8e-09 36.7 0.1 1.4e-07 31.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|297526697|ref|YP_003668721.1| - 1.8e-08 34.6 0.1 0.0049 16.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|297526697|ref|YP_003668721.1| - 0.00028 20.7 0.0 0.0022 17.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|297526697|ref|YP_003668721.1| - 0.00035 21.1 0.0 0.00071 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|297526697|ref|YP_003668721.1| - 0.016 15.1 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|297526697|ref|YP_003668721.1| - 0.021 13.5 0.7 0.59 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|297526697|ref|YP_003668721.1| - 0.024 14.4 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|297526697|ref|YP_003668721.1| - 0.036 14.5 0.2 0.082 13.3 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|297526697|ref|YP_003668721.1| - 0.041 13.6 0.2 0.065 12.9 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|297526697|ref|YP_003668721.1| - 0.043 14.2 0.0 0.052 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|297526697|ref|YP_003668721.1| - 0.052 13.1 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|297526697|ref|YP_003668721.1| - 0.062 12.9 0.0 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|297526697|ref|YP_003668721.1| - 0.11 12.8 0.1 0.25 11.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|297526697|ref|YP_003668721.1| - 0.12 11.9 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.12 gi|297526697|ref|YP_003668721.1| - 0.12 12.3 0.1 0.32 10.9 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|297526697|ref|YP_003668721.1| - 0.13 12.3 0.0 0.52 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|297526697|ref|YP_003668721.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.5 2 0 0 2 2 1 0 AAA domain UPF0051 PF01458.17 gi|297526698|ref|YP_003668722.1| - 2.4e-67 226.8 0.1 3e-67 226.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|297526699|ref|YP_003668723.1| - 7.9e-36 123.8 0.0 1e-35 123.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|297526700|ref|YP_003668724.1| - 9.9e-24 84.4 0.0 2.4e-23 83.2 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|297526700|ref|YP_003668724.1| - 3.5e-10 40.2 0.0 1.4e-06 28.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|297526700|ref|YP_003668724.1| - 1.2e-05 25.9 0.7 2.5e-05 24.9 0.5 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|297526700|ref|YP_003668724.1| - 0.037 13.4 0.4 1.4 8.3 0.0 2.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain IpaB_EvcA PF03278.13 gi|297526700|ref|YP_003668724.1| - 0.06 13.1 0.1 3.1 7.5 0.0 2.3 2 0 0 2 2 2 0 IpaB/EvcA family ORF6C PF10552.9 gi|297526700|ref|YP_003668724.1| - 0.064 13.3 0.2 16 5.6 0.0 2.5 2 0 0 2 2 2 0 ORF6C domain AAA_23 PF13476.6 gi|297526700|ref|YP_003668724.1| - 0.067 13.7 2.3 0.098 13.1 0.2 2.1 2 1 0 2 2 2 0 AAA domain MobB PF03205.14 gi|297526700|ref|YP_003668724.1| - 0.084 12.8 0.3 10 6.0 0.1 2.6 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|297526700|ref|YP_003668724.1| - 0.13 11.9 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.7 gi|297526701|ref|YP_003668725.1| - 2.2e-10 40.3 32.2 1.4e-09 37.7 32.2 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein CarboxypepD_reg PF13620.6 gi|297526701|ref|YP_003668725.1| - 0.0018 18.5 0.0 0.0038 17.5 0.0 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain PIG-F PF06699.11 gi|297526701|ref|YP_003668725.1| - 0.44 10.7 9.0 1 9.5 9.0 1.7 1 0 0 1 1 1 0 GPI biosynthesis protein family Pig-F ABC2_membrane_4 PF12730.7 gi|297526701|ref|YP_003668725.1| - 0.91 9.5 28.8 0.25 11.3 18.3 3.1 2 1 1 3 3 3 0 ABC-2 family transporter protein Glycos_transf_2 PF00535.26 gi|297526702|ref|YP_003668726.1| - 3.6e-30 105.0 0.1 4.5e-30 104.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|297526702|ref|YP_003668726.1| - 3.5e-11 43.5 0.0 4.2e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|297526702|ref|YP_003668726.1| - 0.0019 18.7 0.0 0.0047 17.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_7N PF13733.6 gi|297526702|ref|YP_003668726.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 N-terminal region of glycosyl transferase group 7 Galactosyl_T PF01762.21 gi|297526702|ref|YP_003668726.1| - 0.088 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Galactosyltransferase ABC_tran PF00005.27 gi|297526703|ref|YP_003668727.1| - 1.2e-34 119.8 0.0 1.9e-34 119.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|297526703|ref|YP_003668727.1| - 6e-08 33.4 0.0 1.6e-07 32.0 0.0 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|297526703|ref|YP_003668727.1| - 5.8e-07 29.6 1.6 0.0027 17.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526703|ref|YP_003668727.1| - 0.0028 17.1 0.2 0.84 9.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|297526703|ref|YP_003668727.1| - 0.0039 16.9 0.2 0.011 15.4 0.2 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain TOBE_2 PF08402.10 gi|297526703|ref|YP_003668727.1| - 0.022 14.9 0.0 0.055 13.6 0.0 1.7 1 0 0 1 1 1 0 TOBE domain G-alpha PF00503.20 gi|297526703|ref|YP_003668727.1| - 0.071 12.3 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_25 PF13481.6 gi|297526703|ref|YP_003668727.1| - 0.082 12.5 0.0 0.39 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|297526703|ref|YP_003668727.1| - 0.091 12.7 0.2 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|297526703|ref|YP_003668727.1| - 0.1 13.0 0.0 0.62 10.5 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|297526703|ref|YP_003668727.1| - 0.14 12.5 0.8 0.33 11.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|297526704|ref|YP_003668728.1| - 3.4e-08 33.4 19.7 3.4e-08 33.4 19.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|297526705|ref|YP_003668729.1| - 1.2e-13 51.2 15.0 1.2e-13 51.2 15.0 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PMP22_Claudin PF00822.20 gi|297526705|ref|YP_003668729.1| - 0.063 13.1 0.6 0.063 13.1 0.6 3.1 4 0 0 4 4 4 0 PMP-22/EMP/MP20/Claudin family SBP_bac_1 PF01547.25 gi|297526706|ref|YP_003668730.1| - 1.4e-26 94.2 7.5 5.2e-26 92.3 7.5 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2749 PF10907.8 gi|297526706|ref|YP_003668730.1| - 1.9 8.7 5.2 4.2 7.6 5.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) tRNA-synt_1f PF01921.18 gi|297526708|ref|YP_003668732.1| - 1.8e-95 319.9 0.5 2.4e-95 319.5 0.5 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.12 gi|297526708|ref|YP_003668732.1| - 0.075 12.6 0.9 0.2 11.2 0.9 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding IMS_C PF11799.8 gi|297526708|ref|YP_003668732.1| - 0.11 13.2 0.2 11 6.7 0.1 2.4 2 0 0 2 2 2 0 impB/mucB/samB family C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|297526708|ref|YP_003668732.1| - 0.12 12.3 0.3 0.23 11.4 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PEGSRP PF07623.11 gi|297526708|ref|YP_003668732.1| - 0.16 11.8 0.0 0.45 10.4 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1584) zinc_ribbon_10 PF10058.9 gi|297526708|ref|YP_003668732.1| - 0.63 9.8 2.1 1.6 8.5 2.1 1.7 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin_2 PF18073.1 gi|297526708|ref|YP_003668732.1| - 2.3 8.0 5.1 1.4 8.7 1.0 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF1028 PF06267.12 gi|297526709|ref|YP_003668733.1| - 3.1e-50 170.7 0.0 3.4e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) RHH_1 PF01402.21 gi|297526710|ref|YP_003668734.1| - 0.03 14.3 0.0 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family CagD PF16567.5 gi|297526710|ref|YP_003668734.1| - 0.035 13.9 4.8 1.4 8.7 0.0 2.1 1 1 0 2 2 2 0 Pathogenicity island component CagD DUF1548 PF07579.11 gi|297526710|ref|YP_003668734.1| - 0.047 14.0 0.1 0.069 13.5 0.1 1.3 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1548) LRR_4 PF12799.7 gi|297526710|ref|YP_003668734.1| - 0.052 14.0 0.8 0.098 13.1 0.2 1.9 2 1 0 2 2 2 0 Leucine Rich repeats (2 copies) GATase_6 PF13522.6 gi|297526711|ref|YP_003668735.1| - 4.8e-08 33.3 0.0 8.6e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|297526711|ref|YP_003668735.1| - 1.3e-07 30.9 0.0 1.9e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Rep_fac_C PF08542.11 gi|297526712|ref|YP_003668736.1| - 0.093 13.1 0.8 0.44 11.0 0.1 2.1 2 1 0 2 2 2 0 Replication factor C C-terminal domain CaM_bdg_C0 PF10562.9 gi|297526712|ref|YP_003668736.1| - 2.3 8.4 7.5 30 4.8 3.1 3.4 2 1 1 3 3 3 0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit Aminotran_1_2 PF00155.21 gi|297526713|ref|YP_003668737.1| - 6.7e-74 249.2 0.0 7.5e-74 249.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|297526713|ref|YP_003668737.1| - 1e-07 31.6 0.0 1.6e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|297526713|ref|YP_003668737.1| - 2.4e-05 23.4 0.0 4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|297526713|ref|YP_003668737.1| - 0.0014 18.0 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|297526713|ref|YP_003668737.1| - 0.0026 16.4 0.0 0.0037 15.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|297526713|ref|YP_003668737.1| - 0.064 11.9 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III Rsbr_N PF08678.10 gi|297526713|ref|YP_003668737.1| - 0.12 12.5 0.1 0.79 9.8 0.0 2.4 3 0 0 3 3 3 0 Rsbr N terminal Glyco_hydro_130 PF04041.13 gi|297526714|ref|YP_003668738.1| - 3.3e-68 230.0 5.2 3.8e-68 229.8 5.2 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase DEAD PF00270.29 gi|297526715|ref|YP_003668739.1| - 3.8e-17 62.6 0.5 1.5e-16 60.7 0.0 2.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|297526715|ref|YP_003668739.1| - 8.5e-16 58.3 1.3 2e-15 57.1 0.1 2.4 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|297526715|ref|YP_003668739.1| - 3.3e-06 27.2 0.4 9e-06 25.8 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 gi|297526715|ref|YP_003668739.1| - 0.0014 18.3 2.4 0.012 15.1 0.0 2.4 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|297526715|ref|YP_003668739.1| - 0.024 15.0 0.0 0.071 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain Ribonuc_2-5A PF06479.12 gi|297526715|ref|YP_003668739.1| - 0.25 11.5 2.3 5.9 7.1 0.3 2.7 2 0 0 2 2 2 0 Ribonuclease 2-5A FrhB_FdhB_N PF04422.13 gi|297526716|ref|YP_003668740.1| - 7.5e-07 29.2 0.0 8.6e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Molybdopterin PF00384.22 gi|297526718|ref|YP_003668742.1| - 3.2e-82 276.8 0.0 4e-82 276.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|297526718|ref|YP_003668742.1| - 1.5e-23 82.9 0.0 3.4e-23 81.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|297526718|ref|YP_003668742.1| - 7e-15 54.8 0.3 1.4e-14 53.8 0.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NTP_transf_3 PF12804.7 gi|297526719|ref|YP_003668743.1| - 4.6e-21 75.8 0.0 5.5e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|297526719|ref|YP_003668743.1| - 0.092 12.7 0.0 0.15 11.9 0.0 1.5 1 1 0 1 1 1 0 Cytidylyltransferase Aldedh PF00171.22 gi|297526720|ref|YP_003668744.1| - 9.7e-119 396.9 0.0 1.1e-118 396.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|297526720|ref|YP_003668744.1| - 0.00076 18.6 0.0 0.27 10.2 0.0 2.4 2 1 0 2 2 2 2 Acyl-CoA reductase (LuxC) Glycos_transf_1 PF00534.20 gi|297526721|ref|YP_003668745.1| - 3e-22 79.0 0.0 6.1e-22 78.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|297526721|ref|YP_003668745.1| - 9.1e-11 42.0 0.0 1.9e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297526721|ref|YP_003668745.1| - 1.1e-10 42.1 0.0 1.7e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Regulator_TrmB PF11495.8 gi|297526722|ref|YP_003668746.1| - 1e-24 87.1 0.6 1.9e-24 86.1 0.6 1.4 1 1 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|297526722|ref|YP_003668746.1| - 6.9e-23 80.3 0.5 4.8e-22 77.6 0.1 2.5 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|297526722|ref|YP_003668746.1| - 0.0033 17.7 0.0 0.0097 16.2 0.0 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|297526722|ref|YP_003668746.1| - 0.041 13.7 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|297526722|ref|YP_003668746.1| - 0.059 13.5 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|297526722|ref|YP_003668746.1| - 0.061 13.1 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain ABC_tran PF00005.27 gi|297526723|ref|YP_003668747.1| - 1.7e-35 122.5 0.0 2.5e-35 122.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526723|ref|YP_003668747.1| - 5.6e-11 42.8 0.0 0.00027 20.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|297526723|ref|YP_003668747.1| - 0.00017 21.7 0.2 0.0047 17.1 0.1 2.5 2 0 0 2 2 2 1 TOBE domain ABC_ATPase PF09818.9 gi|297526723|ref|YP_003668747.1| - 0.00045 19.1 0.5 0.28 9.9 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class SMC_N PF02463.19 gi|297526723|ref|YP_003668747.1| - 0.0006 19.3 0.1 0.0059 16.1 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|297526723|ref|YP_003668747.1| - 0.00062 19.5 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|297526723|ref|YP_003668747.1| - 0.00096 19.7 0.0 0.0019 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|297526723|ref|YP_003668747.1| - 0.0019 18.2 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|297526723|ref|YP_003668747.1| - 0.0029 17.8 0.1 0.028 14.7 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|297526723|ref|YP_003668747.1| - 0.0092 16.3 0.4 0.042 14.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|297526723|ref|YP_003668747.1| - 0.016 14.8 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|297526723|ref|YP_003668747.1| - 0.019 14.9 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|297526723|ref|YP_003668747.1| - 0.019 15.4 0.1 0.52 10.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|297526723|ref|YP_003668747.1| - 0.022 15.2 0.1 0.033 14.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|297526723|ref|YP_003668747.1| - 0.027 14.4 0.1 0.093 12.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|297526723|ref|YP_003668747.1| - 0.033 14.4 0.1 0.079 13.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|297526723|ref|YP_003668747.1| - 0.039 13.7 0.3 0.098 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|297526723|ref|YP_003668747.1| - 0.055 12.3 0.0 0.079 11.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|297526723|ref|YP_003668747.1| - 0.076 13.6 0.0 0.16 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|297526723|ref|YP_003668747.1| - 0.078 12.3 0.3 4.6 6.5 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_13 PF13166.6 gi|297526723|ref|YP_003668747.1| - 0.11 11.1 0.0 0.57 8.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|297526723|ref|YP_003668747.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain SH3_13 PF18335.1 gi|297526723|ref|YP_003668747.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 ATP-dependent RecD-like DNA helicase SH3 domain Rad17 PF03215.15 gi|297526723|ref|YP_003668747.1| - 0.18 11.7 0.1 0.48 10.3 0.0 1.6 2 0 0 2 2 1 0 Rad17 P-loop domain BPD_transp_1 PF00528.22 gi|297526724|ref|YP_003668748.1| - 1.4e-21 77.1 14.7 1.4e-21 77.1 14.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|297526725|ref|YP_003668749.1| - 2.1e-16 60.2 23.8 2.1e-16 60.2 23.8 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component CPP1-like PF11833.8 gi|297526725|ref|YP_003668749.1| - 3.4 7.3 10.1 0.088 12.5 3.2 2.0 2 1 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like SBP_bac_1 PF01547.25 gi|297526726|ref|YP_003668750.1| - 1.8e-41 143.2 7.1 1.8e-41 143.2 7.1 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|297526726|ref|YP_003668750.1| - 1.2e-27 97.4 0.3 2.2e-27 96.6 0.2 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein B277 PF17623.2 gi|297526726|ref|YP_003668750.1| - 2.9 6.9 4.5 4.6 6.2 4.5 1.2 1 0 0 1 1 1 0 Domain of unknown function ATPase_gene1 PF09527.10 gi|297526726|ref|YP_003668750.1| - 3.7 7.8 8.3 0.19 11.9 2.3 1.9 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter DapB_N PF01113.20 gi|297526727|ref|YP_003668751.1| - 5.2e-09 36.3 0.1 9.9e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|297526727|ref|YP_003668751.1| - 0.0002 21.9 0.2 0.00084 19.9 0.1 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.24 gi|297526727|ref|YP_003668751.1| - 0.00025 21.3 1.9 0.00088 19.6 1.9 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|297526727|ref|YP_003668751.1| - 0.0066 17.1 0.0 0.016 15.9 0.0 1.6 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|297526727|ref|YP_003668751.1| - 0.019 15.8 0.0 0.039 14.8 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|297526727|ref|YP_003668751.1| - 0.072 12.5 1.1 0.13 11.6 0.2 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PALP PF00291.25 gi|297526728|ref|YP_003668752.1| - 3.4e-78 263.1 0.0 3.9e-78 262.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Nmad3 PF18754.1 gi|297526729|ref|YP_003668753.1| - 4.2e-08 33.1 0.0 4.8e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 Na_H_Exchanger PF00999.21 gi|297526730|ref|YP_003668754.1| - 9.7e-51 172.7 51.3 1.1e-50 172.5 51.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family HAD_2 PF13419.6 gi|297526731|ref|YP_003668755.1| - 1.8e-15 57.5 0.2 2.5e-15 57.0 0.2 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|297526731|ref|YP_003668755.1| - 1.4e-06 28.7 0.0 5.1e-06 26.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|297526731|ref|YP_003668755.1| - 1.9e-06 27.8 0.0 5.9e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like 5_nucleotid PF05761.14 gi|297526731|ref|YP_003668755.1| - 0.0016 17.5 0.0 0.0034 16.3 0.0 1.5 1 0 0 1 1 1 1 5' nucleotidase family DUF763 PF05559.11 gi|297526732|ref|YP_003668756.1| - 6.4e-125 416.5 0.0 7.7e-125 416.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH_5 PF14520.6 gi|297526732|ref|YP_003668756.1| - 2.7 8.7 5.0 5.8 7.6 0.2 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix domain AAA_23 PF13476.6 gi|297526734|ref|YP_003668758.1| - 2.9e-07 31.2 132.6 1.5e+03 -0.5 0.1 6.7 2 1 1 3 3 1 0 AAA domain AAA_21 PF13304.6 gi|297526734|ref|YP_003668758.1| - 3.6e-07 30.3 0.6 3.6e-07 30.3 0.6 4.4 1 1 2 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|297526734|ref|YP_003668758.1| - 6.1e-07 29.5 82.7 0.0012 18.6 34.3 3.5 2 1 1 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|297526734|ref|YP_003668758.1| - 3.7e-06 26.6 0.0 7.1e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|297526734|ref|YP_003668758.1| - 1.4e-05 24.7 0.0 1.4e-05 24.7 0.0 3.0 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain Spc7 PF08317.11 gi|297526734|ref|YP_003668758.1| - 1.7e-05 23.9 95.2 0.11 11.4 15.6 4.7 1 1 4 5 5 5 4 Spc7 kinetochore protein BRE1 PF08647.11 gi|297526734|ref|YP_003668758.1| - 2.1e-05 24.5 19.3 2.1e-05 24.5 19.3 5.0 3 2 1 4 4 4 1 BRE1 E3 ubiquitin ligase HrpB7 PF09486.10 gi|297526734|ref|YP_003668758.1| - 0.00011 22.6 3.3 0.00011 22.6 3.3 4.3 2 2 2 4 4 4 1 Bacterial type III secretion protein (HrpB7) AAA_27 PF13514.6 gi|297526734|ref|YP_003668758.1| - 0.00013 21.6 0.0 0.00013 21.6 0.0 4.8 4 1 1 5 5 5 1 AAA domain Laminin_II PF06009.12 gi|297526734|ref|YP_003668758.1| - 0.0014 18.7 2.4 0.0014 18.7 2.4 5.1 3 2 2 5 5 5 1 Laminin Domain II Rad50_zn_hook PF04423.14 gi|297526734|ref|YP_003668758.1| - 0.0022 17.8 5.1 0.0022 17.8 5.1 8.6 5 2 3 9 9 9 1 Rad50 zinc hook motif AAA_13 PF13166.6 gi|297526734|ref|YP_003668758.1| - 0.006 15.3 81.8 0.01 14.5 29.9 4.9 3 1 3 6 6 6 3 AAA domain AAA_25 PF13481.6 gi|297526734|ref|YP_003668758.1| - 0.012 15.2 0.0 0.035 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain FliJ PF02050.16 gi|297526734|ref|YP_003668758.1| - 0.012 15.8 7.8 0.012 15.8 7.8 5.3 3 2 2 5 5 5 0 Flagellar FliJ protein DUF1664 PF07889.12 gi|297526734|ref|YP_003668758.1| - 0.094 12.8 61.6 0.031 14.3 6.8 5.8 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) AAA_22 PF13401.6 gi|297526734|ref|YP_003668758.1| - 0.098 12.9 0.0 0.098 12.9 0.0 4.6 5 0 0 5 5 5 0 AAA domain AAA_16 PF13191.6 gi|297526734|ref|YP_003668758.1| - 0.3 11.4 0.0 0.3 11.4 0.0 3.1 3 2 1 4 4 3 0 AAA ATPase domain HOOK PF05622.12 gi|297526734|ref|YP_003668758.1| - 0.69 8.0 80.8 0.029 12.5 14.8 3.2 2 1 0 2 2 2 0 HOOK protein ABC_tran PF00005.27 gi|297526734|ref|YP_003668758.1| - 0.94 10.0 0.0 0.94 10.0 0.0 6.3 2 1 1 3 3 1 0 ABC transporter LURAP PF14854.6 gi|297526734|ref|YP_003668758.1| - 1 9.4 15.8 1.2 9.1 3.6 3.5 2 2 0 2 2 2 0 Leucine rich adaptor protein Fez1 PF06818.15 gi|297526734|ref|YP_003668758.1| - 1.1 9.7 77.3 1.2 9.5 14.4 4.3 3 1 1 4 4 4 0 Fez1 APG6_N PF17675.1 gi|297526734|ref|YP_003668758.1| - 1.6 9.3 105.3 0.027 15.0 19.1 5.6 2 1 2 5 5 4 0 Apg6 coiled-coil region DUF3479 PF11965.8 gi|297526734|ref|YP_003668758.1| - 2.3 8.3 10.9 0.25 11.4 3.8 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3479) Exonuc_VII_L PF02601.15 gi|297526734|ref|YP_003668758.1| - 3.3 7.2 60.0 0.91 9.0 18.5 3.5 1 1 2 3 3 3 0 Exonuclease VII, large subunit DUF4407 PF14362.6 gi|297526734|ref|YP_003668758.1| - 9.1 5.5 50.8 1.4e+02 1.6 27.7 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF87 PF01935.17 gi|297526735|ref|YP_003668759.1| - 8.4e-14 52.2 1.3 2.2e-12 47.6 0.0 2.4 2 0 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|297526735|ref|YP_003668759.1| - 0.00015 21.2 0.0 0.0029 17.0 0.0 2.4 3 0 0 3 3 3 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|297526735|ref|YP_003668759.1| - 0.0023 16.9 0.0 0.015 14.2 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|297526735|ref|YP_003668759.1| - 0.0068 16.4 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|297526735|ref|YP_003668759.1| - 0.012 15.5 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|297526735|ref|YP_003668759.1| - 0.012 14.9 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DEAD PF00270.29 gi|297526735|ref|YP_003668759.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|297526735|ref|YP_003668759.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|297526735|ref|YP_003668759.1| - 0.16 11.0 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Metallophos PF00149.28 gi|297526737|ref|YP_003668761.1| - 9.1e-09 36.1 0.0 1.6e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|297526737|ref|YP_003668761.1| - 4.2e-07 30.3 0.0 1.5e-06 28.5 0.0 1.9 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain dCMP_cyt_deam_1 PF00383.23 gi|297526738|ref|YP_003668762.1| - 1e-15 57.4 0.1 1.3e-15 57.1 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|297526738|ref|YP_003668762.1| - 2.5e-10 40.7 0.1 3.6e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|297526738|ref|YP_003668762.1| - 3.2e-05 23.6 1.3 0.0074 15.9 0.2 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases tRNA-synt_1 PF00133.22 gi|297526739|ref|YP_003668763.1| - 2.7e-177 590.7 0.1 3.9e-177 590.2 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|297526739|ref|YP_003668763.1| - 1.3e-38 132.4 2.1 1.3e-38 132.4 2.1 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|297526739|ref|YP_003668763.1| - 1.3e-20 73.6 0.2 2.7e-07 29.7 0.0 4.3 3 2 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|297526739|ref|YP_003668763.1| - 0.00022 20.8 0.0 0.00074 19.1 0.0 1.9 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|297526739|ref|YP_003668763.1| - 0.037 13.4 0.0 1.7 8.0 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain ABC_tran PF00005.27 gi|297526740|ref|YP_003668764.1| - 3.1e-26 92.5 0.0 4.5e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526740|ref|YP_003668764.1| - 3.3e-15 56.7 1.3 1.3e-10 41.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|297526740|ref|YP_003668764.1| - 7e-07 29.9 0.2 2e-06 28.5 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|297526740|ref|YP_003668764.1| - 0.00064 19.5 0.0 0.9 9.2 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain MukB PF04310.12 gi|297526740|ref|YP_003668764.1| - 0.0024 17.7 0.0 0.0043 16.9 0.0 1.4 1 0 0 1 1 1 1 MukB N-terminal Rad17 PF03215.15 gi|297526740|ref|YP_003668764.1| - 0.0038 17.2 0.0 0.0064 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|297526740|ref|YP_003668764.1| - 0.0042 16.8 0.0 0.0083 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|297526740|ref|YP_003668764.1| - 0.04 14.4 0.9 0.082 13.4 0.9 1.6 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|297526740|ref|YP_003668764.1| - 0.054 12.9 0.0 10 5.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|297526740|ref|YP_003668764.1| - 0.057 13.1 0.1 0.083 12.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|297526740|ref|YP_003668764.1| - 0.059 13.8 0.3 0.25 11.7 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IspD PF01128.19 gi|297526740|ref|YP_003668764.1| - 0.068 12.9 0.1 0.15 11.8 0.0 1.5 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AAA_16 PF13191.6 gi|297526740|ref|YP_003668764.1| - 0.11 12.9 0.0 0.19 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain HD PF01966.22 gi|297526744|ref|YP_003668768.1| - 9.2e-11 42.0 0.1 3.2e-10 40.3 0.1 2.0 1 0 0 1 1 1 1 HD domain Ist1 PF03398.14 gi|297526744|ref|YP_003668768.1| - 0.026 14.4 0.0 0.056 13.4 0.0 1.5 1 0 0 1 1 1 0 Regulator of Vps4 activity in the MVB pathway MS_channel PF00924.18 gi|297526745|ref|YP_003668769.1| - 1e-49 168.9 2.5 1e-49 168.9 2.5 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|297526745|ref|YP_003668769.1| - 0.00065 19.6 6.1 0.00065 19.6 6.1 2.5 2 1 1 3 3 3 1 Conserved TM helix Colicin_V PF02674.16 gi|297526745|ref|YP_003668769.1| - 0.025 14.5 12.3 0.03 14.3 10.3 1.9 1 1 1 2 2 2 0 Colicin V production protein Asp23 PF03780.13 gi|297526745|ref|YP_003668769.1| - 0.042 14.3 0.2 0.091 13.2 0.2 1.7 1 0 0 1 1 1 0 Asp23 family, cell envelope-related function Sigma_reg_N PF13800.6 gi|297526747|ref|YP_003668771.1| - 0.1 12.9 2.3 0.28 11.5 2.3 1.8 1 0 0 1 1 1 0 Sigma factor regulator N-terminal zinc_ribbon_9 PF14369.6 gi|297526748|ref|YP_003668772.1| - 0.0009 19.5 1.1 0.071 13.4 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon zinc_ribbon_2 PF13240.6 gi|297526748|ref|YP_003668772.1| - 0.00093 18.8 4.0 0.36 10.6 0.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|297526748|ref|YP_003668772.1| - 0.0011 18.9 0.2 1.4 9.0 0.0 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|297526748|ref|YP_003668772.1| - 0.0013 18.0 4.9 0.19 11.2 0.7 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|297526748|ref|YP_003668772.1| - 0.0014 19.0 1.2 1.3 9.6 0.3 2.4 2 0 0 2 2 2 2 Zinc-finger double domain CpXC PF14353.6 gi|297526748|ref|YP_003668772.1| - 0.0017 18.4 0.7 0.059 13.4 0.7 2.1 1 1 0 1 1 1 1 CpXC protein UPF0547 PF10571.9 gi|297526748|ref|YP_003668772.1| - 0.0059 16.7 3.0 0.19 11.9 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Rad50_zn_hook PF04423.14 gi|297526748|ref|YP_003668772.1| - 0.0062 16.3 1.4 0.09 12.6 0.2 2.1 2 0 0 2 2 2 1 Rad50 zinc hook motif zf-C2HC_2 PF13913.6 gi|297526748|ref|YP_003668772.1| - 0.0067 16.3 8.6 0.023 14.6 0.5 2.5 3 0 0 3 3 2 1 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.10 gi|297526748|ref|YP_003668772.1| - 0.0081 16.3 0.8 0.86 9.8 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|297526748|ref|YP_003668772.1| - 0.0092 15.9 0.8 1.6 8.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-Di19 PF05605.12 gi|297526748|ref|YP_003668772.1| - 0.013 15.8 1.0 0.89 9.9 0.3 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|297526748|ref|YP_003668772.1| - 0.017 14.7 1.9 2.1 7.9 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|297526748|ref|YP_003668772.1| - 0.017 15.3 2.4 1.4 9.1 0.3 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Prok-RING_1 PF14446.6 gi|297526748|ref|YP_003668772.1| - 0.017 15.0 0.9 0.54 10.2 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 FYDLN_acid PF09538.10 gi|297526748|ref|YP_003668772.1| - 0.02 15.6 0.2 3.4 8.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) DZR PF12773.7 gi|297526748|ref|YP_003668772.1| - 0.022 14.8 0.9 3.1 7.9 0.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.26 gi|297526748|ref|YP_003668772.1| - 0.073 13.6 3.4 6.6 7.4 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Ribosomal_S27 PF01599.19 gi|297526748|ref|YP_003668772.1| - 0.083 13.1 1.3 1.8 8.8 0.2 2.3 2 0 0 2 2 2 0 Ribosomal protein S27a DUF723 PF05265.13 gi|297526748|ref|YP_003668772.1| - 0.095 12.7 0.5 0.56 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF723) HypA PF01155.19 gi|297526748|ref|YP_003668772.1| - 0.1 12.6 0.3 0.26 11.3 0.3 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3268 PF11672.8 gi|297526748|ref|YP_003668772.1| - 0.11 12.8 0.7 1.1 9.6 0.7 2.0 1 1 0 1 1 1 0 zinc-finger-containing domain Mu-like_Com PF10122.9 gi|297526748|ref|YP_003668772.1| - 0.11 11.9 1.8 3 7.4 0.2 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com Sgf11 PF08209.11 gi|297526748|ref|YP_003668772.1| - 0.12 11.9 2.1 1.7 8.3 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF2225 PF09986.9 gi|297526748|ref|YP_003668772.1| - 0.12 12.1 2.1 1.5 8.5 2.1 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF1610 PF07754.11 gi|297526748|ref|YP_003668772.1| - 0.17 11.8 0.3 0.17 11.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) SoxD PF04267.12 gi|297526748|ref|YP_003668772.1| - 0.19 11.9 0.2 0.91 9.7 0.1 1.9 2 0 0 2 2 2 0 Sarcosine oxidase, delta subunit family zf-CHCC PF10276.9 gi|297526748|ref|YP_003668772.1| - 0.21 11.7 3.8 1.8 8.7 0.7 2.2 2 0 0 2 2 2 0 Zinc-finger domain Cys_rich_CPXG PF14255.6 gi|297526748|ref|YP_003668772.1| - 0.38 10.7 3.2 2.8 7.9 1.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-Mss51 PF13824.6 gi|297526748|ref|YP_003668772.1| - 0.69 10.1 3.9 29 4.8 4.3 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_4 PF13894.6 gi|297526748|ref|YP_003668772.1| - 1.1 10.3 5.7 9.8 7.3 0.2 2.5 2 1 0 2 2 2 0 C2H2-type zinc finger PhnA_Zn_Ribbon PF08274.12 gi|297526748|ref|YP_003668772.1| - 1.5 8.9 5.0 8.7 6.4 1.0 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon AhpC-TSA PF00578.21 gi|297526749|ref|YP_003668773.1| - 4.7e-34 117.0 0.0 7e-34 116.4 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|297526749|ref|YP_003668773.1| - 3e-17 62.7 0.0 4.1e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|297526749|ref|YP_003668773.1| - 1.3e-12 47.3 0.1 2.6e-12 46.4 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|297526749|ref|YP_003668773.1| - 0.08 13.1 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Trm5_N PF18093.1 gi|297526749|ref|YP_003668773.1| - 0.96 9.4 3.6 0.43 10.5 0.7 2.0 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain Peptidase_M42 PF05343.14 gi|297526750|ref|YP_003668774.1| - 4.6e-108 360.7 1.3 5.3e-108 360.4 1.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|297526750|ref|YP_003668774.1| - 2.4e-09 37.2 0.1 4.1e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|297526750|ref|YP_003668774.1| - 1.3e-07 31.5 0.0 8.6e-05 22.3 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|297526750|ref|YP_003668774.1| - 0.0071 15.2 0.1 0.032 13.0 0.0 2.0 2 1 1 3 3 3 1 Aminopeptidase I zinc metalloprotease (M18) LdpA_C PF12617.8 gi|297526750|ref|YP_003668774.1| - 0.12 11.9 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 Iron-Sulfur binding protein C terminal Lactamase_B PF00753.27 gi|297526751|ref|YP_003668775.1| - 4.7e-05 23.5 0.0 7.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily FMN_red PF03358.15 gi|297526751|ref|YP_003668775.1| - 0.00033 20.4 0.0 0.00081 19.2 0.0 1.6 2 0 0 2 2 2 1 NADPH-dependent FMN reductase Spermine_synth PF01564.17 gi|297526751|ref|YP_003668775.1| - 0.0022 17.5 0.7 0.015 14.7 0.1 2.3 2 0 0 2 2 2 1 Spermine/spermidine synthase domain Lactamase_B_2 PF12706.7 gi|297526751|ref|YP_003668775.1| - 0.011 15.3 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Peripla_BP_6 PF13458.6 gi|297526751|ref|YP_003668775.1| - 0.013 15.2 0.0 0.077 12.6 0.0 2.0 1 1 0 1 1 1 0 Periplasmic binding protein Egg_lysin PF01303.17 gi|297526751|ref|YP_003668775.1| - 0.043 14.0 0.2 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 Egg lysin (Sperm-lysin) CRISPR_Cas9_WED PF18061.1 gi|297526751|ref|YP_003668775.1| - 0.051 13.7 2.1 0.33 11.0 0.1 2.5 2 0 0 2 2 2 0 CRISPR-Cas9 WED domain GCR1_C PF12550.8 gi|297526751|ref|YP_003668775.1| - 0.093 13.1 3.0 7.7 6.9 0.0 3.0 3 0 0 3 3 3 0 Transcriptional activator of glycolytic enzymes PGM_PMM_II PF02879.16 gi|297526751|ref|YP_003668775.1| - 0.16 12.6 0.0 3.9 8.2 0.0 2.6 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VIT1 PF01988.19 gi|297526752|ref|YP_003668776.1| - 7.4e-50 169.8 3.3 1.5e-49 168.8 2.5 1.8 2 0 0 2 2 2 1 VIT family Rubrerythrin PF02915.17 gi|297526752|ref|YP_003668776.1| - 5.5e-12 46.3 0.8 5.5e-12 46.3 0.8 1.7 2 0 0 2 2 2 1 Rubrerythrin DUF977 PF06163.11 gi|297526752|ref|YP_003668776.1| - 0.059 13.3 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) TENA_THI-4 PF03070.16 gi|297526753|ref|YP_003668777.1| - 6.6e-46 156.8 0.1 7.5e-46 156.6 0.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family ABC_cobalt PF09819.9 gi|297526754|ref|YP_003668778.1| - 3.9e-29 101.2 11.1 3.9e-29 101.2 11.1 2.0 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component DUF3147 PF11345.8 gi|297526754|ref|YP_003668778.1| - 0.00036 20.9 0.4 0.00036 20.9 0.4 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF3147) MtrB PF05440.12 gi|297526754|ref|YP_003668778.1| - 0.57 10.6 2.5 5.1 7.6 0.1 2.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Thi4 PF01946.17 gi|297526755|ref|YP_003668779.1| - 2.2e-57 194.0 1.8 2.5e-57 193.8 1.8 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|297526755|ref|YP_003668779.1| - 1.2e-09 38.2 3.7 3.5e-05 23.6 2.6 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|297526755|ref|YP_003668779.1| - 2.6e-09 36.7 1.0 3.3e-05 23.2 0.7 2.5 1 1 2 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|297526755|ref|YP_003668779.1| - 2.6e-08 34.0 1.1 5.7e-08 32.9 1.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|297526755|ref|YP_003668779.1| - 1.7e-07 30.7 0.2 2.6e-07 30.1 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|297526755|ref|YP_003668779.1| - 2.4e-07 30.5 0.4 3.6e-07 29.9 0.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|297526755|ref|YP_003668779.1| - 5.2e-06 25.4 1.0 1.3e-05 24.2 0.9 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|297526755|ref|YP_003668779.1| - 5.6e-06 25.8 1.8 7.6e-06 25.4 1.8 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|297526755|ref|YP_003668779.1| - 0.00077 18.8 0.6 0.0014 17.9 0.6 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|297526755|ref|YP_003668779.1| - 0.0031 16.6 1.0 0.005 16.0 1.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|297526755|ref|YP_003668779.1| - 0.0039 16.5 0.2 0.0064 15.8 0.2 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|297526755|ref|YP_003668779.1| - 0.044 12.8 0.2 0.08 12.0 0.1 1.4 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|297526755|ref|YP_003668779.1| - 0.066 13.8 0.5 0.2 12.2 0.5 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|297526755|ref|YP_003668779.1| - 0.15 12.0 1.4 0.39 10.7 0.9 2.0 2 1 0 2 2 2 0 FAD-NAD(P)-binding CbiQ PF02361.16 gi|297526756|ref|YP_003668780.1| - 6.5e-13 48.8 8.6 6.5e-13 48.8 8.6 1.3 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|297526757|ref|YP_003668781.1| - 8.7e-47 159.1 0.0 9.5e-23 81.2 0.0 2.6 3 0 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 gi|297526757|ref|YP_003668781.1| - 9.3e-27 94.6 10.6 5.2e-10 39.6 0.0 4.2 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526757|ref|YP_003668781.1| - 3.6e-13 49.5 0.0 0.00049 19.6 0.0 3.9 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|297526757|ref|YP_003668781.1| - 2.7e-09 37.2 3.4 0.0016 18.2 0.1 3.6 3 1 1 4 4 4 2 AAA ATPase domain AAA_29 PF13555.6 gi|297526757|ref|YP_003668781.1| - 6.5e-09 35.4 1.5 0.0011 18.7 0.3 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|297526757|ref|YP_003668781.1| - 1e-08 35.9 7.7 0.00056 20.5 0.1 2.8 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|297526757|ref|YP_003668781.1| - 1.2e-08 35.5 0.0 0.00056 20.3 0.0 2.7 3 0 0 3 3 2 2 AAA ATPase domain T2SSE PF00437.20 gi|297526757|ref|YP_003668781.1| - 1.3e-08 34.3 2.6 0.0014 17.8 0.5 2.6 2 1 0 2 2 2 2 Type II/IV secretion system protein AAA_24 PF13479.6 gi|297526757|ref|YP_003668781.1| - 3.1e-08 33.6 2.1 0.018 14.8 0.0 3.5 3 1 1 4 4 4 2 AAA domain AAA_22 PF13401.6 gi|297526757|ref|YP_003668781.1| - 1.6e-07 31.7 4.9 0.01 16.1 0.0 3.7 3 2 1 4 4 3 2 AAA domain AAA_25 PF13481.6 gi|297526757|ref|YP_003668781.1| - 2.4e-07 30.5 0.0 0.0045 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|297526757|ref|YP_003668781.1| - 4.7e-07 29.7 0.2 0.031 14.0 0.0 2.8 3 0 0 3 3 3 2 AAA domain Rad17 PF03215.15 gi|297526757|ref|YP_003668781.1| - 7.3e-07 29.3 0.1 0.003 17.5 0.0 2.6 2 0 0 2 2 2 2 Rad17 P-loop domain NACHT PF05729.12 gi|297526757|ref|YP_003668781.1| - 7.6e-07 29.2 0.7 0.05 13.5 0.1 2.7 2 0 0 2 2 2 2 NACHT domain RsgA_GTPase PF03193.16 gi|297526757|ref|YP_003668781.1| - 9.1e-07 28.9 1.0 0.052 13.5 0.1 3.0 3 0 0 3 3 3 2 RsgA GTPase AAA_33 PF13671.6 gi|297526757|ref|YP_003668781.1| - 9.6e-07 29.0 0.0 0.0063 16.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|297526757|ref|YP_003668781.1| - 1.8e-06 28.0 4.6 0.029 14.3 0.0 3.3 4 0 0 4 4 2 2 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|297526757|ref|YP_003668781.1| - 1.9e-06 28.0 1.3 0.12 12.4 0.1 3.7 2 2 1 3 3 3 2 AAA domain cobW PF02492.19 gi|297526757|ref|YP_003668781.1| - 6.9e-06 25.8 4.1 0.041 13.5 1.3 2.5 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|297526757|ref|YP_003668781.1| - 9.2e-06 26.1 1.1 2 8.8 0.0 4.6 4 0 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|297526757|ref|YP_003668781.1| - 9.7e-06 26.1 2.1 0.032 14.8 0.1 3.5 4 0 0 4 4 3 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|297526757|ref|YP_003668781.1| - 2e-05 24.1 0.1 0.03 13.7 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family Pox_A32 PF04665.12 gi|297526757|ref|YP_003668781.1| - 4.3e-05 23.1 0.4 0.11 11.9 0.0 2.5 2 0 0 2 2 2 2 Poxvirus A32 protein ATP_bind_1 PF03029.17 gi|297526757|ref|YP_003668781.1| - 0.00012 22.0 0.1 0.33 10.7 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|297526757|ref|YP_003668781.1| - 0.00012 22.0 2.2 0.33 10.9 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|297526757|ref|YP_003668781.1| - 0.00018 21.8 1.9 0.43 10.9 0.4 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|297526757|ref|YP_003668781.1| - 0.0002 21.7 0.2 0.39 11.1 0.0 2.8 2 1 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.21 gi|297526757|ref|YP_003668781.1| - 0.00023 20.6 0.1 0.15 11.4 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|297526757|ref|YP_003668781.1| - 0.00037 20.5 0.7 1.8 8.6 0.2 3.5 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_11 PF13086.6 gi|297526757|ref|YP_003668781.1| - 0.00038 20.3 0.0 0.75 9.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|297526757|ref|YP_003668781.1| - 0.00072 19.6 0.2 1.5 8.8 0.0 2.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRPRB PF09439.10 gi|297526757|ref|YP_003668781.1| - 0.0014 18.0 4.0 0.35 10.3 0.2 3.8 4 0 0 4 4 4 1 Signal recognition particle receptor beta subunit PRK PF00485.18 gi|297526757|ref|YP_003668781.1| - 0.0022 17.8 0.2 0.13 11.9 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family PhoH PF02562.16 gi|297526757|ref|YP_003668781.1| - 0.0028 17.1 0.1 2.4 7.5 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_28 PF13521.6 gi|297526757|ref|YP_003668781.1| - 0.003 17.8 5.5 0.54 10.5 2.1 2.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|297526757|ref|YP_003668781.1| - 0.0038 17.0 0.1 0.75 9.5 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein NB-ARC PF00931.22 gi|297526757|ref|YP_003668781.1| - 0.004 16.4 0.4 1.4 8.0 0.1 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_7 PF12775.7 gi|297526757|ref|YP_003668781.1| - 0.0042 16.6 0.1 2.4 7.6 0.0 2.5 2 0 0 2 2 2 1 P-loop containing dynein motor region Septin PF00735.18 gi|297526757|ref|YP_003668781.1| - 0.0043 16.4 1.8 1.3 8.2 0.0 2.4 2 0 0 2 2 2 1 Septin DEAD PF00270.29 gi|297526757|ref|YP_003668781.1| - 0.0077 16.0 0.0 3.9 7.2 0.3 3.1 2 2 1 3 3 3 0 DEAD/DEAH box helicase RNA12 PF10443.9 gi|297526757|ref|YP_003668781.1| - 0.0078 15.0 0.3 0.35 9.6 0.1 2.1 2 0 0 2 2 2 1 RNA12 protein MMR_HSR1 PF01926.23 gi|297526757|ref|YP_003668781.1| - 0.0083 16.2 3.4 1.4 9.0 0.0 2.8 3 0 0 3 3 2 1 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.9 gi|297526757|ref|YP_003668781.1| - 0.0087 15.0 0.6 1.7 7.5 0.0 3.0 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.14 gi|297526757|ref|YP_003668781.1| - 0.013 14.7 0.0 0.92 8.6 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase AAA_35 PF14516.6 gi|297526757|ref|YP_003668781.1| - 0.015 14.1 0.0 0.11 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_27 PF13514.6 gi|297526757|ref|YP_003668781.1| - 0.017 14.7 0.2 0.23 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|297526757|ref|YP_003668781.1| - 0.022 13.6 0.4 1.8 7.3 0.0 2.2 2 0 0 2 2 2 0 Adenovirus IVa2 protein Roc PF08477.13 gi|297526757|ref|YP_003668781.1| - 0.028 14.6 1.2 8.3 6.7 0.0 2.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|297526757|ref|YP_003668781.1| - 0.03 14.0 1.1 4.3 7.1 0.6 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DAP3 PF10236.9 gi|297526757|ref|YP_003668781.1| - 0.044 12.9 0.1 0.73 8.9 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 dNK PF01712.19 gi|297526757|ref|YP_003668781.1| - 0.049 13.5 0.4 7.2 6.4 0.0 2.5 2 0 0 2 2 2 0 Deoxynucleoside kinase NTPase_1 PF03266.15 gi|297526757|ref|YP_003668781.1| - 0.049 13.5 11.1 0.067 13.1 1.3 2.8 3 0 0 3 3 2 0 NTPase DnaB_C PF03796.15 gi|297526757|ref|YP_003668781.1| - 0.05 12.9 0.0 1.6 8.0 0.0 2.5 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Cytidylate_kin PF02224.18 gi|297526757|ref|YP_003668781.1| - 0.051 13.3 0.4 14 5.4 0.0 3.1 3 0 0 3 3 3 0 Cytidylate kinase Guanylate_kin PF00625.21 gi|297526757|ref|YP_003668781.1| - 0.057 13.1 0.2 8.3 6.1 0.0 2.5 2 0 0 2 2 2 0 Guanylate kinase SRP54 PF00448.22 gi|297526757|ref|YP_003668781.1| - 0.068 12.8 4.7 1.2 8.7 0.2 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|297526757|ref|YP_003668781.1| - 0.089 12.7 0.1 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase RuvA_C PF07499.13 gi|297526757|ref|YP_003668781.1| - 0.099 13.1 0.1 0.3 11.6 0.1 1.8 1 0 0 1 1 1 0 RuvA, C-terminal domain ATPase PF06745.13 gi|297526757|ref|YP_003668781.1| - 0.11 11.9 5.5 2.2 7.6 0.4 2.9 3 1 0 3 3 2 0 KaiC ResIII PF04851.15 gi|297526757|ref|YP_003668781.1| - 0.11 12.5 0.0 4.7 7.2 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit KAP_NTPase PF07693.14 gi|297526757|ref|YP_003668781.1| - 0.11 11.7 0.3 9.5 5.4 0.1 2.5 2 1 0 2 2 2 0 KAP family P-loop domain RecA PF00154.21 gi|297526757|ref|YP_003668781.1| - 0.14 11.6 0.4 17 4.8 0.1 2.2 2 0 0 2 2 2 0 recA bacterial DNA recombination protein SbcCD_C PF13558.6 gi|297526757|ref|YP_003668781.1| - 0.16 12.3 0.0 10 6.5 0.0 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.20 gi|297526757|ref|YP_003668781.1| - 0.27 10.3 0.7 19 4.3 0.0 2.4 2 1 0 2 2 2 0 G-protein alpha subunit DUF3584 PF12128.8 gi|297526757|ref|YP_003668781.1| - 0.27 8.7 0.4 2.6 5.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) MutS_V PF00488.21 gi|297526757|ref|YP_003668781.1| - 0.32 11.0 1.7 7.3 6.6 0.1 2.5 2 0 0 2 2 2 0 MutS domain V ABC_ATPase PF09818.9 gi|297526757|ref|YP_003668781.1| - 0.35 9.6 3.3 1.9 7.2 0.1 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_17 PF13207.6 gi|297526757|ref|YP_003668781.1| - 0.35 11.3 2.2 13 6.2 0.1 2.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|297526757|ref|YP_003668781.1| - 0.39 9.9 1.5 2.7 7.1 0.7 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) GvpD PF07088.11 gi|297526757|ref|YP_003668781.1| - 0.42 9.2 1.7 4.7 5.7 0.4 2.1 2 0 0 2 2 2 0 GvpD gas vesicle protein Viral_helicase1 PF01443.18 gi|297526757|ref|YP_003668781.1| - 0.48 10.1 1.5 18 5.0 0.2 2.6 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.23 gi|297526757|ref|YP_003668781.1| - 0.71 9.9 6.9 0.56 10.3 0.9 3.1 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain Phos_pyr_kin PF08543.12 gi|297526758|ref|YP_003668782.1| - 9.5e-94 313.4 1.9 1.3e-93 312.9 1.9 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|297526758|ref|YP_003668782.1| - 5.5e-65 218.0 0.6 1.3e-64 216.8 0.6 1.6 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|297526758|ref|YP_003668782.1| - 2.1e-13 50.2 0.1 3.5e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|297526758|ref|YP_003668782.1| - 0.00032 20.2 1.2 0.00055 19.4 1.2 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF3074 PF11274.8 gi|297526758|ref|YP_003668782.1| - 0.18 11.8 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3074) Carb_kinase PF01256.17 gi|297526758|ref|YP_003668782.1| - 0.86 9.0 4.7 0.21 11.0 0.4 2.1 2 1 0 2 2 2 0 Carbohydrate kinase HTH_24 PF13412.6 gi|297526759|ref|YP_003668783.1| - 1.1e-17 63.3 1.9 2.3e-17 62.3 0.7 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|297526759|ref|YP_003668783.1| - 1e-16 60.4 0.2 1.7e-16 59.7 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|297526759|ref|YP_003668783.1| - 9.6e-10 38.3 0.0 1.7e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|297526759|ref|YP_003668783.1| - 3e-08 33.5 2.8 3.4e-08 33.3 0.4 2.2 3 0 0 3 3 3 1 HTH domain TrmB PF01978.19 gi|297526759|ref|YP_003668783.1| - 1.9e-06 27.6 0.4 1.6e-05 24.7 0.3 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|297526759|ref|YP_003668783.1| - 5.6e-06 26.2 0.0 1.2e-05 25.1 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|297526759|ref|YP_003668783.1| - 6.4e-05 22.8 0.0 0.00013 21.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|297526759|ref|YP_003668783.1| - 9.3e-05 22.5 0.2 0.00037 20.6 0.1 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|297526759|ref|YP_003668783.1| - 0.00014 21.8 0.0 0.00038 20.4 0.0 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.20 gi|297526759|ref|YP_003668783.1| - 0.0002 21.2 0.0 0.00042 20.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HxlR PF01638.17 gi|297526759|ref|YP_003668783.1| - 0.00024 20.9 0.0 0.00036 20.3 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix NapD PF03927.13 gi|297526759|ref|YP_003668783.1| - 0.00026 21.0 0.0 0.00051 20.0 0.0 1.4 1 0 0 1 1 1 1 NapD protein HTH_20 PF12840.7 gi|297526759|ref|YP_003668783.1| - 0.00056 19.9 0.0 0.00087 19.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|297526759|ref|YP_003668783.1| - 0.0011 18.8 1.0 0.01 15.7 0.4 2.1 2 0 0 2 2 2 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|297526759|ref|YP_003668783.1| - 0.0026 18.0 0.1 0.028 14.8 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulator B-block_TFIIIC PF04182.12 gi|297526759|ref|YP_003668783.1| - 0.0036 17.4 0.4 2 8.6 0.1 2.3 1 1 1 2 2 2 2 B-block binding subunit of TFIIIC AsnC_trans_reg2 PF17805.1 gi|297526759|ref|YP_003668783.1| - 0.0097 16.0 0.0 0.3 11.3 0.0 2.1 2 0 0 2 2 2 1 AsnC-like ligand binding domain MarR_2 PF12802.7 gi|297526759|ref|YP_003668783.1| - 0.011 15.6 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|297526759|ref|YP_003668783.1| - 0.013 16.0 0.2 0.026 15.0 0.2 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|297526759|ref|YP_003668783.1| - 0.016 15.0 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|297526759|ref|YP_003668783.1| - 0.017 14.9 0.1 0.081 12.7 0.1 2.0 2 0 0 2 2 2 0 LexA DNA binding domain FaeA PF04703.12 gi|297526759|ref|YP_003668783.1| - 0.025 14.9 0.1 0.045 14.1 0.1 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_36 PF13730.6 gi|297526759|ref|YP_003668783.1| - 0.035 14.1 0.1 0.1 12.6 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain RepL PF05732.11 gi|297526759|ref|YP_003668783.1| - 0.053 12.9 0.1 0.092 12.2 0.1 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_47 PF16221.5 gi|297526759|ref|YP_003668783.1| - 0.062 12.9 0.1 5.2 6.7 0.1 2.4 2 1 0 2 2 2 0 winged helix-turn-helix HTH_CodY PF08222.11 gi|297526759|ref|YP_003668783.1| - 0.07 12.7 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|297526759|ref|YP_003668783.1| - 0.072 12.8 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_9 PF08221.11 gi|297526759|ref|YP_003668783.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Desulfoferrodox PF01880.18 gi|297526761|ref|YP_003668785.1| - 1.9e-30 105.3 0.0 2.5e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|297526761|ref|YP_003668785.1| - 6.5e-10 39.2 0.0 1e-09 38.6 0.0 1.4 1 1 0 1 1 1 1 Sulfur oxidation protein SoxY Fe-ADH PF00465.19 gi|297526762|ref|YP_003668786.1| - 6.7e-88 295.0 0.0 7.9e-88 294.7 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|297526762|ref|YP_003668786.1| - 5.3e-14 52.5 0.3 8.3e-10 38.8 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Lon_C PF05362.13 gi|297526763|ref|YP_003668787.1| - 3.1e-09 36.7 0.1 6e-09 35.7 0.1 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DNA_binding_1 PF01035.20 gi|297526764|ref|YP_003668788.1| - 5.6e-25 87.3 0.0 6.9e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_23 PF13384.6 gi|297526764|ref|YP_003668788.1| - 0.0021 17.8 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|297526764|ref|YP_003668788.1| - 0.037 13.7 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|297526764|ref|YP_003668788.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|297526764|ref|YP_003668788.1| - 0.13 12.1 0.1 0.9 9.4 0.0 2.0 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT ABC_tran PF00005.27 gi|297526766|ref|YP_003668790.1| - 8.6e-10 39.3 0.1 3.1e-09 37.5 0.1 1.8 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526766|ref|YP_003668790.1| - 1.7e-05 24.8 1.9 0.006 16.4 0.9 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|297526766|ref|YP_003668790.1| - 2.1e-05 25.1 0.1 3e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|297526766|ref|YP_003668790.1| - 0.0028 17.4 0.1 0.004 16.9 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|297526766|ref|YP_003668790.1| - 0.0067 16.3 2.3 0.9 9.4 0.7 3.1 2 1 0 2 2 2 1 NTPase SMC_N PF02463.19 gi|297526766|ref|YP_003668790.1| - 0.029 13.8 0.2 0.1 12.0 0.2 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_35 PF14516.6 gi|297526766|ref|YP_003668790.1| - 0.049 12.5 0.0 0.068 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain PRK PF00485.18 gi|297526766|ref|YP_003668790.1| - 0.075 12.8 0.0 0.15 11.8 0.0 1.5 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.6 gi|297526766|ref|YP_003668790.1| - 0.077 12.8 0.3 0.16 11.7 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain CrgA PF06781.12 gi|297526767|ref|YP_003668791.1| - 0.1 12.6 0.1 0.1 12.6 0.1 2.5 2 1 1 3 3 3 0 Cell division protein CrgA PhoU_div PF01865.16 gi|297526769|ref|YP_003668793.1| - 3e-23 82.3 7.4 3.7e-23 82.0 7.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|297526769|ref|YP_003668793.1| - 0.00024 21.5 1.8 0.00024 21.5 1.8 2.6 2 1 0 2 2 2 1 PhoU domain Mod_r PF07200.13 gi|297526769|ref|YP_003668793.1| - 0.0069 16.5 0.3 0.0069 16.5 0.3 1.9 2 0 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein Packaging_FI PF14000.6 gi|297526769|ref|YP_003668793.1| - 0.013 15.9 0.7 0.031 14.7 0.7 1.6 1 0 0 1 1 1 0 DNA packaging protein FI ApoLp-III PF07464.11 gi|297526769|ref|YP_003668793.1| - 0.12 12.4 0.8 2.1 8.4 0.1 2.7 1 1 2 3 3 3 0 Apolipophorin-III precursor (apoLp-III) HEPN_AbiU2 PF18734.1 gi|297526769|ref|YP_003668793.1| - 0.16 11.5 2.9 1.9 8.0 1.6 2.8 1 1 1 2 2 2 0 AbiU2 LUC7 PF03194.15 gi|297526769|ref|YP_003668793.1| - 0.24 11.0 1.2 0.29 10.8 0.4 1.6 1 1 1 2 2 2 0 LUC7 N_terminus APG6_N PF17675.1 gi|297526769|ref|YP_003668793.1| - 8.8 6.9 9.1 1.3 9.6 2.5 2.5 2 1 1 3 3 3 0 Apg6 coiled-coil region TSC22 PF01166.18 gi|297526769|ref|YP_003668793.1| - 9.1 6.7 8.3 12 6.3 0.1 3.5 3 0 0 3 3 3 0 TSC-22/dip/bun family THUMP PF02926.17 gi|297526771|ref|YP_003668795.1| - 6.3e-05 23.1 0.4 8.6e-05 22.7 0.4 1.2 1 0 0 1 1 1 1 THUMP domain XdhC_C PF13478.6 gi|297526773|ref|YP_003668797.1| - 3.8e-29 101.7 0.0 5.7e-29 101.1 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|297526773|ref|YP_003668797.1| - 4.6e-18 65.2 0.0 7.1e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 XdhC and CoxI family TrkA_N PF02254.18 gi|297526773|ref|YP_003668797.1| - 2e-06 28.0 0.0 4.5e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|297526773|ref|YP_003668797.1| - 0.00065 19.1 0.2 0.013 14.9 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|297526773|ref|YP_003668797.1| - 0.0021 18.7 0.5 0.0048 17.5 0.5 1.6 1 0 0 1 1 1 1 PglD N-terminal domain Pyr_redox_2 PF07992.14 gi|297526773|ref|YP_003668797.1| - 0.011 15.0 0.0 0.026 13.7 0.0 1.6 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|297526773|ref|YP_003668797.1| - 0.012 15.0 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|297526773|ref|YP_003668797.1| - 0.018 15.6 0.6 3 8.5 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|297526773|ref|YP_003668797.1| - 0.16 12.5 0.5 0.51 10.9 0.0 2.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase PIN PF01850.21 gi|297526774|ref|YP_003668798.1| - 4.3e-09 36.9 0.4 5.4e-09 36.6 0.4 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|297526774|ref|YP_003668798.1| - 0.0062 16.8 0.0 0.015 15.5 0.0 1.7 2 0 0 2 2 2 1 PIN domain DUF3848 PF12959.7 gi|297526775|ref|YP_003668799.1| - 0.086 12.9 0.1 0.11 12.6 0.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3848) HTH_24 PF13412.6 gi|297526776|ref|YP_003668800.1| - 8e-12 44.5 0.0 1.9e-11 43.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|297526776|ref|YP_003668800.1| - 9.1e-12 44.7 0.0 1.5e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|297526776|ref|YP_003668800.1| - 1e-09 38.3 0.0 1.4e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|297526776|ref|YP_003668800.1| - 1e-07 31.7 0.0 1.6e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|297526776|ref|YP_003668800.1| - 5.3e-07 29.3 0.0 7.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|297526776|ref|YP_003668800.1| - 1.3e-06 28.2 0.2 2.3e-06 27.4 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|297526776|ref|YP_003668800.1| - 4.4e-06 26.5 0.0 7.6e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|297526776|ref|YP_003668800.1| - 7.4e-06 26.1 0.1 1.4e-05 25.2 0.1 1.5 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|297526776|ref|YP_003668800.1| - 4.8e-05 23.0 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|297526776|ref|YP_003668800.1| - 5.4e-05 22.9 0.0 9.8e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|297526776|ref|YP_003668800.1| - 8.1e-05 22.5 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|297526776|ref|YP_003668800.1| - 0.0001 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|297526776|ref|YP_003668800.1| - 0.00013 21.6 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_12 PF08461.10 gi|297526776|ref|YP_003668800.1| - 0.00033 20.6 0.1 0.00079 19.3 0.1 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Sigma70_r4_2 PF08281.12 gi|297526776|ref|YP_003668800.1| - 0.00036 20.2 0.0 0.00066 19.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|297526776|ref|YP_003668800.1| - 0.00044 20.2 0.0 0.0011 18.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix GerE PF00196.19 gi|297526776|ref|YP_003668800.1| - 0.00069 19.1 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|297526776|ref|YP_003668800.1| - 0.00076 19.9 0.2 0.0018 18.7 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|297526776|ref|YP_003668800.1| - 0.00095 18.9 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_27 PF13463.6 gi|297526776|ref|YP_003668800.1| - 0.0013 19.2 0.0 0.002 18.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|297526776|ref|YP_003668800.1| - 0.0016 18.1 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_micro PF17007.5 gi|297526776|ref|YP_003668800.1| - 0.003 16.4 0.4 0.0037 16.1 0.4 1.1 1 0 0 1 1 1 1 HTH-like BLACT_WH PF17778.1 gi|297526776|ref|YP_003668800.1| - 0.0034 17.3 0.0 0.0061 16.5 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Rrf2 PF02082.20 gi|297526776|ref|YP_003668800.1| - 0.0038 17.5 0.0 0.0056 17.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator RepL PF05732.11 gi|297526776|ref|YP_003668800.1| - 0.0045 16.4 0.0 0.0072 15.8 0.0 1.3 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) TMEM135_C_rich PF15982.5 gi|297526776|ref|YP_003668800.1| - 0.0063 17.1 0.7 0.0082 16.8 0.7 1.1 1 0 0 1 1 1 1 N-terminal cysteine-rich region of Transmembrane protein 135 HTH_30 PF13556.6 gi|297526776|ref|YP_003668800.1| - 0.0075 16.0 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Terminase_5 PF06056.12 gi|297526776|ref|YP_003668800.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_DeoR PF08220.12 gi|297526776|ref|YP_003668800.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|297526776|ref|YP_003668800.1| - 0.014 15.5 0.0 0.023 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|297526776|ref|YP_003668800.1| - 0.015 15.4 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2633 PF11119.8 gi|297526776|ref|YP_003668800.1| - 0.023 14.6 2.3 0.03 14.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2633) RP-C PF03428.13 gi|297526776|ref|YP_003668800.1| - 0.031 13.9 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain Bac_DnaA_C PF08299.11 gi|297526776|ref|YP_003668800.1| - 0.053 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein helix-turn-helix CtsR PF05848.11 gi|297526776|ref|YP_003668800.1| - 0.073 13.0 0.1 0.19 11.7 0.1 1.7 1 1 0 1 1 1 0 CtsR N-terminal HTH domain TetR_N PF00440.23 gi|297526776|ref|YP_003668800.1| - 0.077 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.16 gi|297526776|ref|YP_003668800.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 FeoC PF09012.10 gi|297526776|ref|YP_003668800.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Beta_propel PF09826.9 gi|297526777|ref|YP_003668801.1| - 6.6e-111 371.7 14.0 8.6e-111 371.3 14.0 1.1 1 0 0 1 1 1 1 Beta propeller domain YlbD_coat PF14071.6 gi|297526777|ref|YP_003668801.1| - 0.088 13.1 0.1 0.2 11.9 0.1 1.5 1 0 0 1 1 1 0 Putative coat protein Pyr_redox_2 PF07992.14 gi|297526778|ref|YP_003668802.1| - 2.8e-24 85.9 0.3 4e-24 85.4 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|297526778|ref|YP_003668802.1| - 1.1e-21 76.7 0.0 2e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|297526778|ref|YP_003668802.1| - 3.8e-11 42.8 0.1 5.1e-05 22.7 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|297526778|ref|YP_003668802.1| - 3.5e-09 36.3 5.0 2.6e-05 23.5 1.2 3.3 2 1 1 3 3 3 3 FAD binding domain GIDA PF01134.22 gi|297526778|ref|YP_003668802.1| - 5.7e-09 35.5 4.8 0.0022 17.1 0.0 4.1 4 0 0 4 4 4 3 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|297526778|ref|YP_003668802.1| - 6.2e-09 35.6 2.8 1.7e-05 24.3 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|297526778|ref|YP_003668802.1| - 1.9e-08 34.4 1.5 0.00014 22.0 0.1 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|297526778|ref|YP_003668802.1| - 2.6e-07 30.4 0.6 2.5e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|297526778|ref|YP_003668802.1| - 1.6e-06 28.6 3.1 0.041 14.4 0.0 3.1 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|297526778|ref|YP_003668802.1| - 9.6e-06 25.0 0.4 0.0015 17.9 0.0 2.3 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|297526778|ref|YP_003668802.1| - 3.9e-05 22.5 2.5 0.00087 18.1 0.2 2.4 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|297526778|ref|YP_003668802.1| - 0.00013 22.4 0.1 0.23 11.9 0.0 2.6 2 1 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|297526778|ref|YP_003668802.1| - 0.00058 19.2 1.2 0.018 14.3 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|297526778|ref|YP_003668802.1| - 0.00087 19.0 7.6 0.065 12.8 0.4 3.6 2 2 1 4 4 4 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|297526778|ref|YP_003668802.1| - 0.0032 17.1 1.0 1 8.9 0.1 2.5 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|297526778|ref|YP_003668802.1| - 0.033 13.8 0.1 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA ELFV_dehydrog PF00208.21 gi|297526778|ref|YP_003668802.1| - 0.11 12.2 0.1 0.34 10.6 0.0 1.8 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Glu_dehyd_C PF16912.5 gi|297526778|ref|YP_003668802.1| - 0.17 11.4 0.5 4.5 6.7 0.1 2.3 2 0 0 2 2 2 0 Glucose dehydrogenase C-terminus Lycopene_cycl PF05834.12 gi|297526778|ref|YP_003668802.1| - 0.68 8.9 4.3 0.14 11.2 0.7 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|297526778|ref|YP_003668802.1| - 3.6 7.6 4.8 4.2 7.3 0.2 3.1 4 0 0 4 4 4 0 FAD-NAD(P)-binding Fer4 PF00037.27 gi|297526779|ref|YP_003668803.1| - 9.7e-11 41.0 19.0 3.6e-08 32.9 4.7 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297526779|ref|YP_003668803.1| - 8.9e-09 35.8 6.4 2e-08 34.7 6.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|297526779|ref|YP_003668803.1| - 3.6e-07 30.2 6.3 0.00073 19.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297526779|ref|YP_003668803.1| - 4.3e-07 29.7 16.3 2.8e-05 24.0 3.3 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|297526779|ref|YP_003668803.1| - 4.9e-06 26.6 8.5 9.1e-06 25.7 8.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|297526779|ref|YP_003668803.1| - 1.3e-05 25.3 8.2 7.8e-05 22.9 1.0 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|297526779|ref|YP_003668803.1| - 2.5e-05 24.7 0.4 0.003 18.0 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297526779|ref|YP_003668803.1| - 8.3e-05 23.4 9.6 0.028 15.3 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|297526779|ref|YP_003668803.1| - 0.00011 22.3 13.2 0.00026 21.0 13.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297526779|ref|YP_003668803.1| - 0.00029 20.7 4.7 0.00029 20.7 4.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|297526779|ref|YP_003668803.1| - 0.0079 16.9 0.9 0.0079 16.9 0.9 3.2 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|297526779|ref|YP_003668803.1| - 0.021 15.3 9.5 0.023 15.2 1.3 2.4 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|297526779|ref|YP_003668803.1| - 0.05 14.1 1.6 0.05 14.1 1.6 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|297526779|ref|YP_003668803.1| - 0.078 13.9 14.0 0.8 10.8 6.6 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|297526779|ref|YP_003668803.1| - 5.2 7.3 10.6 20 5.4 10.6 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|297526779|ref|YP_003668803.1| - 6.6 7.6 9.5 0.27 12.1 1.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain SO_alpha_A3 PF17806.1 gi|297526780|ref|YP_003668804.1| - 2.1e-19 69.6 0.0 2.7e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|297526780|ref|YP_003668804.1| - 9.7e-14 51.5 0.6 1.2e-13 51.1 0.6 1.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DAO PF01266.24 gi|297526781|ref|YP_003668805.1| - 5.1e-53 180.9 0.0 5.8e-53 180.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|297526781|ref|YP_003668805.1| - 1.4e-05 24.5 0.1 0.07 12.4 0.1 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|297526781|ref|YP_003668805.1| - 1.5e-05 24.4 0.3 0.013 14.8 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|297526781|ref|YP_003668805.1| - 0.00011 22.7 0.6 0.045 14.3 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|297526781|ref|YP_003668805.1| - 0.00011 21.4 0.0 0.00033 19.9 0.0 1.6 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|297526781|ref|YP_003668805.1| - 0.0018 18.5 0.1 0.0042 17.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|297526781|ref|YP_003668805.1| - 0.0018 17.6 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Shikimate_DH PF01488.20 gi|297526781|ref|YP_003668805.1| - 0.0018 18.3 0.0 0.0041 17.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.6 gi|297526781|ref|YP_003668805.1| - 0.045 13.7 0.1 0.078 13.0 0.1 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|297526781|ref|YP_003668805.1| - 0.054 12.2 0.6 3.9 6.1 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.17 gi|297526781|ref|YP_003668805.1| - 0.064 12.5 0.8 2.1 7.5 0.1 2.2 2 0 0 2 2 2 0 Thi4 family TetR_C_34 PF17929.1 gi|297526781|ref|YP_003668805.1| - 0.073 13.2 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PfkB PF00294.24 gi|297526782|ref|YP_003668806.1| - 5.8e-54 183.4 0.0 6.8e-54 183.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|297526782|ref|YP_003668806.1| - 1.7e-05 24.3 0.0 2.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ComA PF02679.15 gi|297526782|ref|YP_003668806.1| - 0.063 12.7 0.0 0.13 11.7 0.0 1.5 1 1 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) RHH_1 PF01402.21 gi|297526783|ref|YP_003668807.1| - 1.7e-06 27.7 0.6 3e-06 27.0 0.6 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|297526783|ref|YP_003668807.1| - 3.2e-05 23.8 0.3 0.00012 22.0 0.0 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|297526783|ref|YP_003668807.1| - 0.00018 21.4 0.0 0.00032 20.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB NikR_C PF08753.11 gi|297526783|ref|YP_003668807.1| - 0.027 14.6 0.3 0.064 13.4 0.1 1.7 2 0 0 2 2 2 0 NikR C terminal nickel binding domain ATP_bind_3 PF01171.20 gi|297526784|ref|YP_003668808.1| - 6e-13 49.0 0.0 1.2e-11 44.8 0.0 2.6 2 1 0 2 2 2 1 PP-loop family zn-ribbon_14 PF16503.5 gi|297526784|ref|YP_003668808.1| - 0.0012 18.3 2.0 0.0012 18.3 2.0 2.6 4 0 0 4 4 4 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|297526784|ref|YP_003668808.1| - 0.0026 16.6 0.0 0.0035 16.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|297526784|ref|YP_003668808.1| - 0.097 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Importin_rep_2 PF18786.1 gi|297526784|ref|YP_003668808.1| - 0.21 11.4 0.4 9.6 6.2 0.1 2.4 2 0 0 2 2 2 0 Importin 13 repeat C5HCH PF17982.1 gi|297526784|ref|YP_003668808.1| - 0.38 10.9 0.1 0.38 10.9 0.1 2.5 3 0 0 3 3 3 0 NSD Cys-His rich domain YyzF PF14116.6 gi|297526784|ref|YP_003668808.1| - 0.7 10.0 3.4 12 6.1 0.0 3.2 3 0 0 3 3 3 0 YyzF-like protein Ribosomal_S14 PF00253.21 gi|297526784|ref|YP_003668808.1| - 0.84 9.5 3.6 9.4 6.1 0.3 2.8 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e C1_2 PF03107.16 gi|297526784|ref|YP_003668808.1| - 1 9.7 4.6 8.2 6.8 0.4 2.8 3 0 0 3 3 3 0 C1 domain RecR PF02132.15 gi|297526784|ref|YP_003668808.1| - 1.1 8.9 11.8 0.041 13.5 2.2 2.9 3 0 0 3 3 3 0 RecR protein ThiS PF02597.20 gi|297526785|ref|YP_003668809.1| - 4.2e-09 36.9 0.4 4.9e-09 36.7 0.4 1.0 1 0 0 1 1 1 1 ThiS family Trm5_N PF18093.1 gi|297526785|ref|YP_003668809.1| - 0.022 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain SLBB PF10531.9 gi|297526785|ref|YP_003668809.1| - 0.055 13.4 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 SLBB domain KHA PF11834.8 gi|297526785|ref|YP_003668809.1| - 0.11 12.6 0.6 0.16 12.1 0.6 1.3 1 1 0 1 1 1 0 KHA, dimerisation domain of potassium ion channel Cellulase PF00150.18 gi|297526786|ref|YP_003668810.1| - 1.1e-60 205.4 0.1 3.6e-60 203.8 0.0 1.7 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) TMEM154 PF15102.6 gi|297526786|ref|YP_003668810.1| - 0.22 11.4 0.3 0.38 10.6 0.3 1.3 1 0 0 1 1 1 0 TMEM154 protein family ABC_tran PF00005.27 gi|297526787|ref|YP_003668811.1| - 4.5e-27 95.2 0.0 6.2e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297526787|ref|YP_003668811.1| - 3.4e-14 53.1 0.2 6.1e-14 52.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|297526787|ref|YP_003668811.1| - 0.00012 22.5 0.0 0.00018 22.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 gi|297526787|ref|YP_003668811.1| - 0.00027 20.4 0.0 0.0064 15.9 0.0 2.4 2 0 0 2 2 2 1 KaiC AAA_22 PF13401.6 gi|297526787|ref|YP_003668811.1| - 0.0003 21.1 0.0 0.0031 17.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|297526787|ref|YP_003668811.1| - 0.0011 18.7 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|297526787|ref|YP_003668811.1| - 0.0023 17.7 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein RecA PF00154.21 gi|297526787|ref|YP_003668811.1| - 0.0028 17.2 0.0 0.006 16.1 0.0 1.5 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_21 PF13304.6 gi|297526787|ref|YP_003668811.1| - 0.0055 16.6 0.8 1.3 8.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|297526787|ref|YP_003668811.1| - 0.0084 15.8 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|297526787|ref|YP_003668811.1| - 0.0093 16.1 0.1 0.026 14.6 0.0 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain NACHT PF05729.12 gi|297526787|ref|YP_003668811.1| - 0.0093 15.9 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_23 PF13476.6 gi|297526787|ref|YP_003668811.1| - 0.011 16.3 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|297526787|ref|YP_003668811.1| - 0.012 16.1 0.0 0.034 14.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain ATPase_2 PF01637.18 gi|297526787|ref|YP_003668811.1| - 0.016 15.1 0.1 0.037 13.9 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|297526787|ref|YP_003668811.1| - 0.017 14.3 0.9 0.053 12.7 0.0 1.9 1 1 1 2 2 2 0 NB-ARC domain CbiA PF01656.23 gi|297526787|ref|YP_003668811.1| - 0.017 15.2 0.0 0.027 14.5 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PRK PF00485.18 gi|297526787|ref|YP_003668811.1| - 0.034 13.9 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|297526787|ref|YP_003668811.1| - 0.047 14.1 0.0 0.48 10.9 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|297526787|ref|YP_003668811.1| - 0.048 13.7 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.14 gi|297526787|ref|YP_003668811.1| - 0.054 13.4 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DLIC PF05783.11 gi|297526787|ref|YP_003668811.1| - 0.079 11.8 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) TsaE PF02367.17 gi|297526787|ref|YP_003668811.1| - 0.095 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|297526787|ref|YP_003668811.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|297526787|ref|YP_003668811.1| - 0.1 11.6 0.1 0.14 11.2 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|297526787|ref|YP_003668811.1| - 0.14 11.4 0.0 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin RsgA_GTPase PF03193.16 gi|297526787|ref|YP_003668811.1| - 0.17 11.8 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|297526787|ref|YP_003668811.1| - 0.2 11.8 0.0 0.31 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|297526788|ref|YP_003668812.1| - 2.2e-20 73.6 0.0 3e-20 73.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297526788|ref|YP_003668812.1| - 5.7e-20 71.6 0.0 1.1e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|297526788|ref|YP_003668812.1| - 2e-06 28.1 0.0 8.1e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|297526788|ref|YP_003668812.1| - 1.2e-05 25.3 0.2 0.017 15.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 gi|297526788|ref|YP_003668812.1| - 0.00036 20.5 0.4 0.014 15.3 0.1 2.2 2 0 0 2 2 2 1 NACHT domain AAA_13 PF13166.6 gi|297526788|ref|YP_003668812.1| - 0.013 14.2 0.8 0.015 14.0 0.0 1.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|297526788|ref|YP_003668812.1| - 0.013 14.7 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|297526788|ref|YP_003668812.1| - 0.015 15.7 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|297526788|ref|YP_003668812.1| - 0.024 14.6 0.1 0.041 13.8 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|297526788|ref|YP_003668812.1| - 0.03 14.0 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|297526788|ref|YP_003668812.1| - 0.033 13.6 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|297526788|ref|YP_003668812.1| - 0.038 13.7 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|297526788|ref|YP_003668812.1| - 0.041 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain PduV-EutP PF10662.9 gi|297526788|ref|YP_003668812.1| - 0.052 13.3 0.4 0.12 12.1 0.1 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.6 gi|297526788|ref|YP_003668812.1| - 0.089 12.5 0.1 3.3 7.3 0.2 2.3 1 1 1 2 2 2 0 AAA ATPase domain PRK PF00485.18 gi|297526788|ref|YP_003668812.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF4777 PF16007.5 gi|297526788|ref|YP_003668812.1| - 0.11 12.8 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) AAA_33 PF13671.6 gi|297526788|ref|YP_003668812.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|297526788|ref|YP_003668812.1| - 0.14 11.2 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit ATPase_2 PF01637.18 gi|297526788|ref|YP_003668812.1| - 0.16 11.8 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Septin PF00735.18 gi|297526788|ref|YP_003668812.1| - 0.17 11.2 0.0 0.32 10.2 0.0 1.4 1 0 0 1 1 1 0 Septin RsgA_GTPase PF03193.16 gi|297526788|ref|YP_003668812.1| - 0.17 11.8 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|297526788|ref|YP_003668812.1| - 0.17 11.5 0.0 0.22 11.1 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.22 gi|297526788|ref|YP_003668812.1| - 0.19 12.2 0.0 0.37 11.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|297526789|ref|YP_003668813.1| - 3.7e-20 72.5 22.2 3.7e-20 72.5 22.2 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|297526789|ref|YP_003668813.1| - 1.7e-06 27.9 0.2 1.7e-06 27.9 0.2 4.0 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|297526790|ref|YP_003668814.1| - 1.4e-36 126.0 13.7 1.4e-36 126.0 13.7 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|297526791|ref|YP_003668815.1| - 4.5e-61 206.9 6.6 4.5e-61 206.9 6.6 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Stevor PF17410.2 gi|297526791|ref|YP_003668815.1| - 0.013 15.1 0.3 0.019 14.5 0.3 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame RIFIN PF02009.16 gi|297526791|ref|YP_003668815.1| - 0.016 15.1 0.3 0.024 14.6 0.3 1.2 1 0 0 1 1 1 0 Rifin m04gp34like PF12216.8 gi|297526791|ref|YP_003668815.1| - 0.097 12.2 0.6 0.19 11.2 0.6 1.5 1 0 0 1 1 1 0 Immune evasion protein DUF929 PF06053.11 gi|297526791|ref|YP_003668815.1| - 2.1 7.6 0.0 2.1 7.6 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF929) MGC-24 PF05283.11 gi|297526791|ref|YP_003668815.1| - 7 7.1 9.6 14 6.2 9.6 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Glyco_hydro_1 PF00232.18 gi|297526792|ref|YP_003668816.1| - 1.1e-61 208.7 3.7 1.2e-51 175.6 0.2 2.7 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Ste5_C PF12194.8 gi|297526793|ref|YP_003668817.1| - 0.016 15.2 0.1 0.016 15.2 0.1 1.1 1 0 0 1 1 1 0 Protein kinase Fus3-binding Peptidase_M32 PF02074.15 gi|297526794|ref|YP_003668818.1| - 1.7e-165 551.5 0.9 1.9e-165 551.3 0.9 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase CorA PF01544.18 gi|297526795|ref|YP_003668819.1| - 3.1e-36 125.2 0.8 3.8e-36 124.9 0.8 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein ACR_tran PF00873.19 gi|297526795|ref|YP_003668819.1| - 0.071 10.8 0.1 0.097 10.3 0.1 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family DeoC PF01791.9 gi|297526796|ref|YP_003668820.1| - 1.1e-36 126.7 0.0 1.6e-36 126.1 0.0 1.3 1 0 0 1 1 1 1 DeoC/LacD family aldolase MFS_1 PF07690.16 gi|297526797|ref|YP_003668821.1| - 1.2e-14 54.1 34.4 1.6e-14 53.6 34.4 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily MoeA_N PF03453.17 gi|297526800|ref|YP_003668824.1| - 1.7e-30 105.8 0.0 2.5e-30 105.3 0.0 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|297526800|ref|YP_003668824.1| - 9e-12 44.9 0.0 1.4e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|297526800|ref|YP_003668824.1| - 0.00024 21.2 0.0 0.0016 18.5 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) DUF364 PF04016.12 gi|297526801|ref|YP_003668825.1| - 4.5e-08 32.8 0.0 7.5e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation Aminotran_3 PF00202.21 gi|297526803|ref|YP_003668827.1| - 1e-114 383.4 0.0 1.2e-114 383.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III FtsH_ext PF06480.15 gi|297526804|ref|YP_003668828.1| - 0.014 15.8 0.1 0.53 10.7 0.2 2.6 2 2 0 2 2 2 0 FtsH Extracellular ATP-synt_8 PF00895.20 gi|297526804|ref|YP_003668828.1| - 7.8 7.1 6.9 21 5.7 6.9 1.8 1 0 0 1 1 1 0 ATP synthase protein 8 tRNA-synt_1d PF00750.19 gi|297526805|ref|YP_003668829.1| - 1.2e-32 113.3 6.2 1.4e-19 70.3 1.7 2.3 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|297526805|ref|YP_003668829.1| - 7.6e-14 51.9 0.1 2.4e-13 50.3 0.1 2.0 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|297526805|ref|YP_003668829.1| - 3.5e-05 24.3 0.0 0.00026 21.5 0.0 2.4 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain MoaC PF01967.21 gi|297526806|ref|YP_003668830.1| - 1.6e-50 170.8 2.4 1.8e-50 170.6 2.4 1.0 1 0 0 1 1 1 1 MoaC family Radical_SAM PF04055.21 gi|297526807|ref|YP_003668831.1| - 1.6e-21 77.4 0.0 2.4e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|297526807|ref|YP_003668831.1| - 2.6e-15 56.5 0.0 4e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|297526807|ref|YP_003668831.1| - 1.1e-05 25.7 0.0 2.7e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|297526807|ref|YP_003668831.1| - 5.5e-05 23.3 0.1 0.00017 21.7 0.1 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF4346 PF14251.6 gi|297526808|ref|YP_003668832.1| - 0.00011 22.2 0.2 0.005 16.9 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Ret2_MD PF18528.1 gi|297526808|ref|YP_003668832.1| - 0.1 13.0 0.7 9.3 6.7 0.0 2.7 2 0 0 2 2 2 0 RNA editing 3' terminal uridylyl transferase 2 middle domain AFOR_N PF02730.15 gi|297526809|ref|YP_003668833.1| - 4.5e-38 131.1 0.3 8.1e-38 130.3 0.1 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|297526809|ref|YP_003668833.1| - 4.5e-18 65.4 0.0 3.1e-17 62.7 0.0 1.9 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 FeoB_N PF02421.18 gi|297526811|ref|YP_003668835.1| - 3.2e-52 176.2 0.0 5.4e-52 175.4 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|297526811|ref|YP_003668835.1| - 1.9e-25 89.3 26.2 1.2e-19 70.7 8.3 3.0 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|297526811|ref|YP_003668835.1| - 2.2e-21 76.1 0.0 3.9e-21 75.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|297526811|ref|YP_003668835.1| - 6.2e-12 45.9 0.1 1.2e-11 45.0 0.1 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain AIG1 PF04548.16 gi|297526811|ref|YP_003668835.1| - 4.4e-07 29.4 0.0 7.7e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.27 gi|297526811|ref|YP_003668835.1| - 3e-06 26.9 0.0 0.00053 19.6 0.0 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|297526811|ref|YP_003668835.1| - 0.00025 21.2 0.2 0.18 11.8 0.1 2.6 2 0 0 2 2 2 2 Dynamin family FeoB_C PF07664.12 gi|297526811|ref|YP_003668835.1| - 0.00032 20.3 0.4 0.00032 20.3 0.4 3.2 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|297526811|ref|YP_003668835.1| - 0.00054 19.9 0.0 0.95 9.4 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|297526811|ref|YP_003668835.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoA PF04023.14 gi|297526812|ref|YP_003668836.1| - 4e-18 65.5 0.3 4.3e-18 65.3 0.3 1.0 1 0 0 1 1 1 1 FeoA domain SNARE_assoc PF09335.11 gi|297526813|ref|YP_003668837.1| - 8.8e-13 48.8 5.0 8.8e-13 48.8 5.0 2.6 2 1 1 3 3 3 1 SNARE associated Golgi protein GWT1 PF06423.12 gi|297526813|ref|YP_003668837.1| - 0.025 14.7 0.8 0.061 13.4 0.7 1.7 1 1 0 1 1 1 0 GWT1 UPF0016 PF01169.19 gi|297526813|ref|YP_003668837.1| - 0.58 10.5 5.4 0.64 10.4 0.8 3.0 1 1 2 3 3 3 0 Uncharacterized protein family UPF0016 DSPc PF00782.20 gi|297526814|ref|YP_003668838.1| - 6.5e-12 45.4 0.0 1.1e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.12 gi|297526814|ref|YP_003668838.1| - 8.5e-05 22.3 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.6 gi|297526814|ref|YP_003668838.1| - 0.036 14.2 0.0 0.16 12.1 0.0 2.1 3 0 0 3 3 3 0 Inositol hexakisphosphate Y_phosphatase PF00102.27 gi|297526814|ref|YP_003668838.1| - 0.045 13.3 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein-tyrosine phosphatase DUF4441 PF14536.6 gi|297526814|ref|YP_003668838.1| - 0.57 10.4 3.5 0.37 11.0 0.5 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4441) AIRS PF00586.24 gi|297526815|ref|YP_003668839.1| - 7.8e-16 58.5 0.0 1.6e-15 57.5 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|297526815|ref|YP_003668839.1| - 3.6e-09 37.0 0.0 6.1e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Arabinose_Isome PF02610.15 gi|297526816|ref|YP_003668840.1| - 0.018 14.3 0.0 0.025 13.8 0.0 1.1 1 0 0 1 1 1 0 L-arabinose isomerase TPR_1 PF00515.28 gi|297526817|ref|YP_003668841.1| - 4.8e-08 32.5 19.7 0.017 14.9 5.1 6.0 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|297526817|ref|YP_003668841.1| - 8.5e-08 31.8 30.2 0.002 18.1 0.6 7.2 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|297526817|ref|YP_003668841.1| - 5.4e-06 26.0 0.0 1.3e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 MalT-like TPR region TPR_12 PF13424.6 gi|297526817|ref|YP_003668841.1| - 1.9e-05 24.9 13.1 0.00095 19.4 2.9 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|297526817|ref|YP_003668841.1| - 0.0022 18.6 1.1 6.9 7.8 0.1 4.4 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|297526817|ref|YP_003668841.1| - 0.0031 17.6 29.2 0.01 16.0 1.0 7.1 6 0 0 6 6 6 2 Tetratricopeptide repeat T2SSE PF00437.20 gi|297526817|ref|YP_003668841.1| - 0.005 15.9 0.0 0.014 14.5 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein TPR_16 PF13432.6 gi|297526817|ref|YP_003668841.1| - 0.017 15.7 0.1 6.2 7.6 0.3 3.6 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|297526817|ref|YP_003668841.1| - 0.028 14.3 6.1 0.57 10.1 0.3 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|297526817|ref|YP_003668841.1| - 0.46 10.8 11.4 0.5 10.6 0.2 5.3 5 1 1 6 6 5 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|297526817|ref|YP_003668841.1| - 1 9.9 5.1 2.8 8.5 0.0 4.0 5 0 0 5 5 5 0 Tetratricopeptide repeat Bap31_Bap29_C PF18035.1 gi|297526817|ref|YP_003668841.1| - 1.9 8.5 5.4 0.74 9.9 0.1 3.0 3 0 0 3 3 3 0 Bap31/Bap29 cytoplasmic coiled-coil domain TPR_7 PF13176.6 gi|297526817|ref|YP_003668841.1| - 3.8 7.8 8.9 2.8 8.2 0.1 4.6 5 0 0 5 5 5 0 Tetratricopeptide repeat ABC2_membrane_3 PF12698.7 gi|297526818|ref|YP_003668842.1| - 0.012 14.7 4.7 0.014 14.5 4.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Lipase_2 PF01674.18 gi|297526818|ref|YP_003668842.1| - 0.054 13.0 0.2 0.068 12.7 0.2 1.1 1 0 0 1 1 1 0 Lipase (class 2) DUF4199 PF13858.6 gi|297526818|ref|YP_003668842.1| - 0.097 13.1 0.1 0.15 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) RIFIN PF02009.16 gi|297526818|ref|YP_003668842.1| - 0.11 12.4 0.8 0.1 12.4 0.8 1.1 1 0 0 1 1 1 0 Rifin DUF963 PF06131.11 gi|297526818|ref|YP_003668842.1| - 0.18 11.3 5.9 0.29 10.6 5.9 1.3 1 0 0 1 1 1 0 Schizosaccharomyces pombe repeat of unknown function (DUF963) MoeA_N PF03453.17 gi|297526819|ref|YP_003668843.1| - 2.8e-39 134.4 0.1 4e-39 133.9 0.1 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|297526819|ref|YP_003668843.1| - 1.1e-24 86.8 0.0 1.7e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|297526819|ref|YP_003668843.1| - 2.1e-15 56.7 0.1 1.7e-14 53.7 0.0 2.6 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) PapC_C PF13953.6 gi|297526819|ref|YP_003668843.1| - 0.011 15.5 0.6 8.4 6.3 0.0 3.3 2 1 1 3 3 3 0 PapC C-terminal domain Lactamase_B PF00753.27 gi|297526820|ref|YP_003668844.1| - 2.2e-06 27.8 0.1 1.5e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|297526820|ref|YP_003668844.1| - 0.0054 16.6 0.1 0.017 15.1 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|297526820|ref|YP_003668844.1| - 0.0057 16.2 0.1 0.018 14.5 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DUF3463 PF11946.8 gi|297526820|ref|YP_003668844.1| - 0.28 11.0 1.0 1.4 8.7 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3463) Radical_SAM_C PF16199.5 gi|297526821|ref|YP_003668845.1| - 8.5e-27 93.0 1.2 1.7e-26 92.0 0.6 1.8 2 0 0 2 2 2 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|297526821|ref|YP_003668845.1| - 7.7e-23 81.7 0.0 1.9e-22 80.4 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|297526821|ref|YP_003668845.1| - 3.6e-08 33.6 0.3 8.5e-08 32.4 0.3 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|297526821|ref|YP_003668845.1| - 0.00065 19.6 0.0 0.0018 18.2 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HobA PF12163.8 gi|297526821|ref|YP_003668845.1| - 0.02 14.5 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 DNA replication regulator NTP_transf_2 PF01909.23 gi|297526822|ref|YP_003668846.1| - 3.1e-11 43.4 0.2 3.8e-11 43.1 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|297526822|ref|YP_003668846.1| - 1.7e-08 34.4 0.2 2e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|297526822|ref|YP_003668846.1| - 0.057 13.2 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|297526823|ref|YP_003668847.1| - 1.2e-25 89.9 0.9 1.4e-25 89.7 0.9 1.0 1 0 0 1 1 1 1 HEPN domain OmdA PF13376.6 gi|297526823|ref|YP_003668847.1| - 0.087 12.8 1.0 0.24 11.5 0.6 1.9 1 1 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated ABC2_membrane PF01061.24 gi|297526824|ref|YP_003668848.1| - 0.0048 16.3 6.2 0.0054 16.2 6.2 1.0 1 0 0 1 1 1 1 ABC-2 type transporter MadM PF03818.13 gi|297526824|ref|YP_003668848.1| - 0.027 14.4 4.4 0.038 13.8 4.4 1.4 1 1 0 1 1 1 0 Malonate/sodium symporter MadM subunit Phage_holin_5_1 PF06946.11 gi|297526824|ref|YP_003668848.1| - 0.046 14.1 0.4 0.047 14.1 0.4 1.1 1 0 0 1 1 1 0 Bacteriophage A118-like holin, Hol118 ABC2_membrane_3 PF12698.7 gi|297526824|ref|YP_003668848.1| - 2 7.4 6.0 2.2 7.3 6.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Syntaxin-18_N PF10496.9 gi|297526825|ref|YP_003668849.1| - 0.018 15.3 0.1 0.033 14.5 0.1 1.5 1 1 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus SIL1 PF16782.5 gi|297526825|ref|YP_003668849.1| - 0.028 13.6 0.4 0.036 13.3 0.4 1.1 1 0 0 1 1 1 0 Nucleotide exchange factor SIL1 FUN14 PF04930.15 gi|297526826|ref|YP_003668850.1| - 1.2 9.6 8.8 0.73 10.3 3.2 2.4 2 0 0 2 2 2 0 FUN14 family Prominin PF05478.11 gi|297526826|ref|YP_003668850.1| - 2.9 5.7 4.6 1.7 6.5 3.1 1.4 1 1 0 1 1 1 0 Prominin DHHC PF01529.20 gi|297526826|ref|YP_003668850.1| - 8 6.6 9.8 17 5.5 6.5 2.1 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF4307 PF14155.6 gi|297526826|ref|YP_003668850.1| - 9.6 6.1 5.7 1.6 8.6 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) GDP_Man_Dehyd PF16363.5 gi|297526827|ref|YP_003668851.1| - 1.1e-68 232.1 0.0 2.5e-68 230.9 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|297526827|ref|YP_003668851.1| - 9.5e-65 218.4 0.0 1.1e-64 218.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|297526827|ref|YP_003668851.1| - 4.3e-26 91.6 0.0 5.7e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|297526827|ref|YP_003668851.1| - 4.2e-20 72.0 0.0 6e-20 71.5 0.0 1.2 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|297526827|ref|YP_003668851.1| - 4.1e-19 68.8 0.0 2.7e-18 66.1 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|297526827|ref|YP_003668851.1| - 5.2e-13 48.7 0.0 1.7e-10 40.5 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 gi|297526827|ref|YP_003668851.1| - 7.1e-07 29.3 0.0 2.3e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|297526827|ref|YP_003668851.1| - 3.4e-06 27.1 0.0 5e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|297526827|ref|YP_003668851.1| - 4.1e-05 23.1 0.0 0.00034 20.1 0.0 2.2 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|297526827|ref|YP_003668851.1| - 0.15 11.6 0.0 1.9 8.0 0.0 2.4 2 1 0 2 2 2 0 NmrA-like family AAA_18 PF13238.6 gi|297526828|ref|YP_003668852.1| - 3e-05 24.6 0.0 0.0014 19.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|297526828|ref|YP_003668852.1| - 0.0012 18.6 0.0 0.0037 17.0 0.0 1.7 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|297526828|ref|YP_003668852.1| - 0.0026 18.2 0.0 0.0046 17.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|297526828|ref|YP_003668852.1| - 0.0045 17.4 0.0 0.011 16.2 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Cytidylate_kin PF02224.18 gi|297526828|ref|YP_003668852.1| - 0.0081 15.9 0.2 0.74 9.5 0.0 2.3 2 0 0 2 2 2 1 Cytidylate kinase AAA_5 PF07728.14 gi|297526828|ref|YP_003668852.1| - 0.012 15.6 0.0 0.024 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 gi|297526828|ref|YP_003668852.1| - 0.013 15.4 0.1 0.021 14.7 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.6 gi|297526828|ref|YP_003668852.1| - 0.014 15.6 0.4 0.039 14.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|297526828|ref|YP_003668852.1| - 0.023 14.3 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RuvB_N PF05496.12 gi|297526828|ref|YP_003668852.1| - 0.023 14.4 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|297526828|ref|YP_003668852.1| - 0.033 14.6 0.0 0.066 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase LpxK PF02606.14 gi|297526828|ref|YP_003668852.1| - 0.039 13.1 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase dNK PF01712.19 gi|297526828|ref|YP_003668852.1| - 0.046 13.6 0.1 8.2 6.2 0.1 2.7 2 1 0 2 2 2 0 Deoxynucleoside kinase AAA_22 PF13401.6 gi|297526828|ref|YP_003668852.1| - 0.066 13.5 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|297526828|ref|YP_003668852.1| - 0.078 12.6 0.0 0.078 12.6 0.0 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain CLP1_P PF16575.5 gi|297526828|ref|YP_003668852.1| - 0.093 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PhoH PF02562.16 gi|297526828|ref|YP_003668852.1| - 0.13 11.7 0.2 9.4 5.6 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein KTI12 PF08433.10 gi|297526828|ref|YP_003668852.1| - 0.14 11.6 0.0 0.35 10.3 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 CPT PF07931.12 gi|297526828|ref|YP_003668852.1| - 0.15 11.9 0.3 0.52 10.1 0.0 1.9 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein SKI PF01202.22 gi|297526828|ref|YP_003668852.1| - 0.19 11.9 0.2 2.7 8.1 0.0 2.3 2 1 0 2 2 2 0 Shikimate kinase Zeta_toxin PF06414.12 gi|297526828|ref|YP_003668852.1| - 0.19 11.0 0.0 0.33 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NTP_transf_5 PF14907.6 gi|297526829|ref|YP_003668853.1| - 1.1e-06 28.5 0.0 2.2e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF2095 PF09868.9 gi|297526829|ref|YP_003668853.1| - 0.0062 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) PASTA PF03793.19 gi|297526829|ref|YP_003668853.1| - 0.17 11.7 0.0 0.77 9.7 0.0 1.9 2 0 0 2 2 2 0 PASTA domain Pyr_redox_2 PF07992.14 gi|297526830|ref|YP_003668854.1| - 4.1e-47 160.8 0.0 5.4e-47 160.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|297526830|ref|YP_003668854.1| - 1.1e-18 67.5 2.9 7e-15 55.3 0.2 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|297526830|ref|YP_003668854.1| - 1.2e-12 48.1 8.7 0.0014 18.3 0.0 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|297526830|ref|YP_003668854.1| - 4.8e-08 33.1 3.1 0.00093 19.4 0.3 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|297526830|ref|YP_003668854.1| - 2.4e-06 27.1 0.2 0.00024 20.5 0.3 2.7 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|297526830|ref|YP_003668854.1| - 7.1e-06 25.0 2.2 0.53 8.9 0.0 4.0 3 1 1 4 4 4 2 HI0933-like protein K_oxygenase PF13434.6 gi|297526830|ref|YP_003668854.1| - 5.6e-05 22.4 0.0 0.00021 20.6 0.0 1.9 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|297526830|ref|YP_003668854.1| - 0.0053 16.0 7.4 0.052 12.8 0.3 2.9 2 1 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.18 gi|297526830|ref|YP_003668854.1| - 0.0065 16.4 0.0 0.0065 16.4 0.0 1.5 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MCRA PF06100.11 gi|297526830|ref|YP_003668854.1| - 0.0089 14.9 0.6 0.27 10.0 0.2 2.7 2 1 1 3 3 3 1 MCRA family NAD_binding_7 PF13241.6 gi|297526830|ref|YP_003668854.1| - 0.011 16.1 0.2 4.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding ApbA PF02558.16 gi|297526830|ref|YP_003668854.1| - 0.014 15.0 4.6 0.053 13.2 0.2 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|297526830|ref|YP_003668854.1| - 0.017 14.2 0.9 1.5 7.8 0.4 2.3 2 1 0 2 2 2 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|297526830|ref|YP_003668854.1| - 0.023 14.1 0.1 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|297526830|ref|YP_003668854.1| - 0.036 14.7 1.1 1.3 9.7 0.3 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_9 PF13454.6 gi|297526830|ref|YP_003668854.1| - 0.053 13.5 10.0 4 7.4 0.0 4.0 3 1 1 4 4 4 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|297526830|ref|YP_003668854.1| - 0.12 11.7 3.1 1.7 7.9 0.3 2.5 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|297526830|ref|YP_003668854.1| - 0.27 10.3 8.8 1.8 7.6 0.7 3.8 3 1 1 4 4 4 0 FAD binding domain Trp_halogenase PF04820.14 gi|297526830|ref|YP_003668854.1| - 0.33 9.7 0.7 4.8 5.9 0.1 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Thi4 PF01946.17 gi|297526830|ref|YP_003668854.1| - 0.37 10.0 3.3 3.3 6.9 0.0 2.8 2 1 1 3 3 3 0 Thi4 family TrkA_N PF02254.18 gi|297526830|ref|YP_003668854.1| - 0.38 11.0 3.5 0.31 11.3 0.2 2.4 2 0 0 2 2 2 0 TrkA-N domain Fer4_6 PF12837.7 gi|297526831|ref|YP_003668855.1| - 2.6e-18 65.2 34.8 5.1e-07 29.5 3.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.27 gi|297526831|ref|YP_003668855.1| - 4.8e-18 64.2 41.9 8.7e-09 34.8 5.3 5.8 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|297526831|ref|YP_003668855.1| - 1.4e-16 60.4 56.8 3.6e-07 30.2 10.5 3.0 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|297526831|ref|YP_003668855.1| - 5.3e-16 59.0 26.5 9.2e-09 35.8 12.5 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|297526831|ref|YP_003668855.1| - 3.7e-14 52.6 14.2 8.7e-14 51.5 14.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|297526831|ref|YP_003668855.1| - 9.9e-14 51.2 27.7 9e-07 28.9 10.9 3.9 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|297526831|ref|YP_003668855.1| - 1.1e-11 44.7 30.7 2.5e-06 27.5 10.9 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297526831|ref|YP_003668855.1| - 1.1e-11 44.0 31.4 9.2e-05 22.3 1.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_3 PF12798.7 gi|297526831|ref|YP_003668855.1| - 7.3e-11 42.2 41.7 0.0012 19.6 4.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|297526831|ref|YP_003668855.1| - 2.4e-10 41.2 24.6 0.022 15.7 1.4 4.2 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|297526831|ref|YP_003668855.1| - 4.3e-08 33.1 32.4 0.00056 20.2 3.1 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|297526831|ref|YP_003668855.1| - 9.2e-06 26.1 27.4 0.2 12.2 2.3 4.1 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|297526831|ref|YP_003668855.1| - 0.00075 19.9 29.2 0.042 14.3 9.0 3.6 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|297526831|ref|YP_003668855.1| - 0.0009 19.7 23.5 0.11 13.1 1.5 4.0 3 1 0 3 3 3 3 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|297526831|ref|YP_003668855.1| - 0.051 14.3 27.5 0.34 11.7 2.9 4.5 3 2 0 3 3 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.6 gi|297526831|ref|YP_003668855.1| - 0.21 11.4 29.0 0.054 13.3 3.0 4.1 1 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFOR_C PF01314.18 gi|297526832|ref|YP_003668856.1| - 1.6e-80 271.0 0.2 1.9e-80 270.7 0.2 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|297526832|ref|YP_003668856.1| - 2.2e-67 226.8 0.1 3.3e-67 226.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF3502 PF12010.8 gi|297526832|ref|YP_003668856.1| - 0.077 13.6 0.0 3.7 8.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3502) RuBisCO_large_N PF02788.16 gi|297526835|ref|YP_003668859.1| - 1e-09 38.6 0.0 1.5e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain SBP_bac_5 PF00496.22 gi|297526836|ref|YP_003668860.1| - 2.7e-102 342.5 2.8 4.1e-102 341.9 2.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PLDc_N PF13396.6 gi|297526836|ref|YP_003668860.1| - 0.024 14.6 0.7 0.069 13.1 0.7 1.8 1 0 0 1 1 1 0 Phospholipase_D-nuclease N-terminal BPD_transp_1 PF00528.22 gi|297526837|ref|YP_003668861.1| - 2.4e-45 154.6 13.8 2.4e-45 154.6 13.8 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|297526838|ref|YP_003668862.1| - 9.3e-24 84.2 9.2 9.3e-24 84.2 9.2 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|297526838|ref|YP_003668862.1| - 0.00037 20.4 0.4 0.00037 20.4 0.4 4.2 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C Transglut_core PF01841.19 gi|297526838|ref|YP_003668862.1| - 0.21 12.1 0.0 17 5.9 0.0 2.2 2 0 0 2 2 2 0 Transglutaminase-like superfamily Ytca PF17090.5 gi|297526838|ref|YP_003668862.1| - 2.2 8.9 11.1 27 5.4 0.1 4.1 4 0 0 4 4 4 0 Uncharacterised protein family ABC_tran PF00005.27 gi|297526839|ref|YP_003668863.1| - 1.3e-32 113.2 0.0 1.8e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297526839|ref|YP_003668863.1| - 7.6e-22 77.6 0.0 1.4e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|297526839|ref|YP_003668863.1| - 1.4e-06 28.4 0.7 0.00014 21.8 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526839|ref|YP_003668863.1| - 1.5e-05 24.5 0.3 0.018 14.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|297526839|ref|YP_003668863.1| - 0.00092 18.9 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|297526839|ref|YP_003668863.1| - 0.0056 17.0 0.3 0.54 10.5 0.1 2.2 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|297526839|ref|YP_003668863.1| - 0.0079 15.0 0.1 0.53 9.0 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|297526839|ref|YP_003668863.1| - 0.019 14.1 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|297526839|ref|YP_003668863.1| - 0.019 14.7 0.0 0.04 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|297526839|ref|YP_003668863.1| - 0.024 13.8 0.1 0.065 12.4 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|297526839|ref|YP_003668863.1| - 0.067 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|297526839|ref|YP_003668863.1| - 0.1 11.9 0.0 0.78 9.1 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|297526839|ref|YP_003668863.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain APS_kinase PF01583.20 gi|297526839|ref|YP_003668863.1| - 0.13 12.1 0.2 0.75 9.7 0.2 2.2 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.6 gi|297526839|ref|YP_003668863.1| - 0.14 12.5 0.2 0.25 11.7 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|297526839|ref|YP_003668863.1| - 0.18 11.3 0.1 0.62 9.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|297526840|ref|YP_003668864.1| - 3.9e-34 118.1 0.0 5.2e-34 117.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297526840|ref|YP_003668864.1| - 1.8e-23 82.8 0.1 3.4e-23 81.9 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|297526840|ref|YP_003668864.1| - 0.00065 20.0 0.5 0.0063 16.8 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|297526840|ref|YP_003668864.1| - 0.005 17.3 0.1 0.0081 16.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|297526840|ref|YP_003668864.1| - 0.018 14.8 0.5 4.4 7.0 0.0 2.2 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|297526840|ref|YP_003668864.1| - 0.022 15.2 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|297526840|ref|YP_003668864.1| - 0.056 13.8 0.0 0.099 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF61 PF01886.16 gi|297526840|ref|YP_003668864.1| - 0.081 13.0 0.2 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF61 ATP-synt_ab PF00006.25 gi|297526840|ref|YP_003668864.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|297526840|ref|YP_003668864.1| - 0.13 12.3 0.1 0.3 11.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|297526840|ref|YP_003668864.1| - 0.16 11.3 0.5 3.2 7.0 0.2 2.3 2 0 0 2 2 2 0 KaiC IstB_IS21 PF01695.17 gi|297526840|ref|YP_003668864.1| - 0.19 11.5 0.0 0.49 10.1 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein RHH_1 PF01402.21 gi|297526841|ref|YP_003668865.1| - 2e-06 27.5 0.9 2e-06 27.5 0.9 2.5 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|297526841|ref|YP_003668865.1| - 0.011 15.9 0.0 0.013 15.7 0.0 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family AAA_15 PF13175.6 gi|297526842|ref|YP_003668866.1| - 1e-29 104.4 0.0 2.7e-27 96.4 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|297526842|ref|YP_003668866.1| - 4.8e-21 75.9 0.1 4.7e-16 59.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|297526842|ref|YP_003668866.1| - 5.4e-05 22.6 0.5 0.13 11.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|297526842|ref|YP_003668866.1| - 0.0063 17.0 0.1 0.027 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|297526842|ref|YP_003668866.1| - 0.029 13.8 0.0 7.6 5.9 0.0 2.3 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|297526842|ref|YP_003668866.1| - 0.1 12.3 0.2 2.4 7.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain MutS_I PF01624.20 gi|297526843|ref|YP_003668867.1| - 0.092 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 MutS domain I Polbeta PF18765.1 gi|297526844|ref|YP_003668868.1| - 7.4e-16 58.0 0.0 1.1e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|297526844|ref|YP_003668868.1| - 1.2e-05 25.5 0.1 2.1e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Rep_fac_C PF08542.11 gi|297526844|ref|YP_003668868.1| - 0.0011 19.3 0.0 0.0051 17.2 0.0 2.2 1 1 0 1 1 1 1 Replication factor C C-terminal domain ABC_tran PF00005.27 gi|297526845|ref|YP_003668869.1| - 2e-28 99.6 0.0 2.6e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter IstB_IS21 PF01695.17 gi|297526845|ref|YP_003668869.1| - 1.5e-05 24.8 0.0 0.0093 15.7 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.6 gi|297526845|ref|YP_003668869.1| - 0.0026 18.2 0.0 0.0031 17.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|297526845|ref|YP_003668869.1| - 0.004 17.4 0.1 0.014 15.6 0.1 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DEAD PF00270.29 gi|297526845|ref|YP_003668869.1| - 0.0096 15.7 0.0 0.016 15.0 0.0 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.18 gi|297526845|ref|YP_003668869.1| - 0.015 14.6 0.0 0.032 13.6 0.0 1.7 1 1 0 1 1 1 0 FtsK/SpoIIIE family T2SSE PF00437.20 gi|297526845|ref|YP_003668869.1| - 0.022 13.9 0.0 0.035 13.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SMC_N PF02463.19 gi|297526845|ref|YP_003668869.1| - 0.027 13.9 0.2 0.063 12.7 0.2 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain CbiA PF01656.23 gi|297526845|ref|YP_003668869.1| - 0.036 14.1 1.0 0.13 12.3 0.1 2.0 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 gi|297526845|ref|YP_003668869.1| - 0.036 13.8 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|297526845|ref|YP_003668869.1| - 0.037 13.2 0.0 0.66 9.1 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_22 PF13401.6 gi|297526845|ref|YP_003668869.1| - 0.04 14.2 1.3 1.4 9.2 0.1 2.5 1 1 1 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|297526845|ref|YP_003668869.1| - 0.055 13.4 0.1 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|297526845|ref|YP_003668869.1| - 0.058 13.3 0.1 0.14 12.1 0.0 1.6 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.16 gi|297526845|ref|YP_003668869.1| - 0.061 12.8 0.0 0.12 11.9 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein ResIII PF04851.15 gi|297526845|ref|YP_003668869.1| - 0.062 13.3 0.1 0.15 12.0 0.1 1.8 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|297526845|ref|YP_003668869.1| - 0.089 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_21 PF13304.6 gi|297526845|ref|YP_003668869.1| - 0.091 12.6 0.3 0.38 10.5 0.1 1.9 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system PTPlike_phytase PF14566.6 gi|297526845|ref|YP_003668869.1| - 0.098 12.8 0.0 0.24 11.5 0.0 1.6 2 0 0 2 2 2 0 Inositol hexakisphosphate AAA_5 PF07728.14 gi|297526845|ref|YP_003668869.1| - 0.12 12.4 0.4 0.31 11.1 0.1 1.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF1616 PF07760.11 gi|297526850|ref|YP_003668874.1| - 9.3e-33 113.9 10.1 1.2e-32 113.5 10.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1616 PF07760.11 gi|297526851|ref|YP_003668875.1| - 7.9e-11 41.9 0.0 1.1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) EzrA PF06160.12 gi|297526851|ref|YP_003668875.1| - 0.0028 15.9 0.4 0.0063 14.7 0.0 1.6 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA YfdX PF10938.8 gi|297526851|ref|YP_003668875.1| - 0.019 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 YfdX protein T4-Gluco-transf PF09198.10 gi|297526851|ref|YP_003668875.1| - 0.06 13.0 1.0 0.64 9.7 0.1 2.9 2 0 0 2 2 2 0 Bacteriophage T4 beta-glucosyltransferase DUF4044 PF13253.6 gi|297526851|ref|YP_003668875.1| - 0.44 10.1 3.9 0.93 9.1 3.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) TRIQK PF15168.6 gi|297526851|ref|YP_003668875.1| - 0.53 10.2 7.3 11 6.0 0.3 3.2 3 0 0 3 3 3 0 Triple QxxK/R motif-containing protein family DUF58 PF01882.18 gi|297526852|ref|YP_003668876.1| - 1.3e-13 51.1 0.0 2.2e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|297526853|ref|YP_003668877.1| - 7.7e-53 177.8 0.0 1.1e-52 177.4 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|297526853|ref|YP_003668877.1| - 2.5e-17 63.2 0.0 3.7e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|297526853|ref|YP_003668877.1| - 5.3e-16 58.2 0.0 8.7e-16 57.5 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain RuvB_N PF05496.12 gi|297526853|ref|YP_003668877.1| - 2.4e-08 33.9 0.0 1.3e-07 31.5 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|297526853|ref|YP_003668877.1| - 8.8e-08 32.0 0.0 5e-07 29.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|297526853|ref|YP_003668877.1| - 8.5e-07 29.5 0.0 1.9e-06 28.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|297526853|ref|YP_003668877.1| - 3.7e-06 26.5 0.0 0.0082 15.5 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|297526853|ref|YP_003668877.1| - 6.1e-06 25.5 0.0 1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 gi|297526853|ref|YP_003668877.1| - 1.2e-05 25.7 0.0 0.001 19.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|297526853|ref|YP_003668877.1| - 0.00016 22.2 0.0 0.00027 21.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|297526853|ref|YP_003668877.1| - 0.0011 19.2 0.0 0.0028 17.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|297526853|ref|YP_003668877.1| - 0.0053 17.1 0.1 0.21 11.9 0.1 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|297526853|ref|YP_003668877.1| - 0.0061 16.7 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_23 PF13476.6 gi|297526853|ref|YP_003668877.1| - 0.015 15.8 0.0 0.021 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|297526853|ref|YP_003668877.1| - 0.016 14.9 0.0 0.09 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|297526853|ref|YP_003668877.1| - 0.027 14.3 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|297526853|ref|YP_003668877.1| - 0.036 14.5 0.0 0.061 13.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase dNK PF01712.19 gi|297526853|ref|YP_003668877.1| - 0.041 13.7 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase NTPase_1 PF03266.15 gi|297526853|ref|YP_003668877.1| - 0.048 13.6 0.1 0.095 12.6 0.1 1.5 1 0 0 1 1 1 0 NTPase T2SSE PF00437.20 gi|297526853|ref|YP_003668877.1| - 0.063 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|297526853|ref|YP_003668877.1| - 0.069 13.3 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|297526853|ref|YP_003668877.1| - 0.071 12.8 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|297526853|ref|YP_003668877.1| - 0.092 12.7 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_transp_aux PF09822.9 gi|297526854|ref|YP_003668878.1| - 0.00023 20.7 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|297526854|ref|YP_003668878.1| - 0.00041 20.7 0.0 0.0014 19.0 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4350) CarboxypepD_reg PF13620.6 gi|297526855|ref|YP_003668879.1| - 0.0015 18.7 0.0 0.005 17.1 0.0 1.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|297526855|ref|YP_003668879.1| - 0.0047 16.9 0.1 0.025 14.6 0.0 2.2 2 0 0 2 2 2 1 CarboxypepD_reg-like domain MG2 PF01835.19 gi|297526855|ref|YP_003668879.1| - 0.01 16.3 0.0 0.05 14.1 0.0 2.0 2 0 0 2 2 2 0 MG2 domain Big_1 PF02369.16 gi|297526855|ref|YP_003668879.1| - 0.012 15.6 0.4 0.047 13.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) BamHI PF02923.15 gi|297526855|ref|YP_003668879.1| - 0.016 15.0 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 Restriction endonuclease BamHI CooC_C PF15976.5 gi|297526855|ref|YP_003668879.1| - 0.12 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 CS1-pili formation C-terminal Glycos_transf_2 PF00535.26 gi|297526858|ref|YP_003668882.1| - 4.1e-25 88.6 0.0 5.7e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|297526858|ref|YP_003668882.1| - 1.8e-11 44.4 0.0 2.4e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|297526858|ref|YP_003668882.1| - 0.00073 20.0 0.0 0.0016 18.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|297526858|ref|YP_003668882.1| - 0.0033 16.9 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Beta-prism_lec PF16458.5 gi|297526858|ref|YP_003668882.1| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 1 1 0 1 1 1 0 Beta-prism lectin DUF373 PF04123.13 gi|297526858|ref|YP_003668882.1| - 6.9 6.0 9.0 2.6 7.4 0.4 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF373) Polysacc_synt_C PF14667.6 gi|297526859|ref|YP_003668883.1| - 0.00076 19.6 21.6 0.00076 19.6 21.6 4.0 4 1 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Methyltransf_11 PF08241.12 gi|297526862|ref|YP_003668886.1| - 3.9e-21 75.5 0.0 5.5e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|297526862|ref|YP_003668886.1| - 3.6e-15 56.1 0.1 1.4e-14 54.1 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297526862|ref|YP_003668886.1| - 3.1e-14 53.4 0.0 4.6e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|297526862|ref|YP_003668886.1| - 1.3e-13 51.1 0.0 1.4e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|297526862|ref|YP_003668886.1| - 6.5e-10 39.6 0.0 1.2e-09 38.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|297526862|ref|YP_003668886.1| - 3.1e-08 33.7 0.0 4.7e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|297526862|ref|YP_003668886.1| - 2.8e-06 26.8 0.0 4.9e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|297526862|ref|YP_003668886.1| - 9.2e-05 21.7 0.0 0.00016 20.8 0.0 1.3 2 0 0 2 2 2 1 DREV methyltransferase MetW PF07021.12 gi|297526862|ref|YP_003668886.1| - 0.0012 18.5 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|297526862|ref|YP_003668886.1| - 0.0076 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|297526862|ref|YP_003668886.1| - 0.013 15.1 0.0 0.12 11.9 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|297526862|ref|YP_003668886.1| - 0.019 13.9 0.0 0.031 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|297526862|ref|YP_003668886.1| - 0.063 12.3 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|297526862|ref|YP_003668886.1| - 0.094 12.0 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase NNMT_PNMT_TEMT PF01234.17 gi|297526862|ref|YP_003668886.1| - 0.14 11.4 0.1 0.73 9.0 0.0 1.9 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family FtsJ PF01728.19 gi|297526862|ref|YP_003668886.1| - 0.22 11.6 0.0 0.46 10.6 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Glycos_transf_2 PF00535.26 gi|297526863|ref|YP_003668887.1| - 2.2e-28 99.2 0.0 3.7e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|297526863|ref|YP_003668887.1| - 2.2e-18 67.0 0.0 4e-18 66.2 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|297526863|ref|YP_003668887.1| - 4.7e-08 32.7 0.0 1.1e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|297526863|ref|YP_003668887.1| - 5.7e-08 32.9 0.4 5.7e-08 32.9 0.4 1.9 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|297526863|ref|YP_003668887.1| - 9.5e-07 28.6 0.0 1.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|297526863|ref|YP_003668887.1| - 0.0024 18.3 0.1 0.0043 17.6 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_4 PF13439.6 gi|297526865|ref|YP_003668889.1| - 1.8e-07 31.3 0.1 2e-07 31.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|297526865|ref|YP_003668889.1| - 6.8e-06 26.6 0.0 7.8e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|297526865|ref|YP_003668889.1| - 0.00082 19.1 0.0 0.00082 19.1 0.0 1.0 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|297526865|ref|YP_003668889.1| - 0.0013 18.8 0.0 0.0013 18.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferase 4-like Epimerase PF01370.21 gi|297526866|ref|YP_003668890.1| - 1.7e-58 197.9 1.1 2.5e-58 197.4 0.1 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|297526866|ref|YP_003668890.1| - 2.1e-57 195.0 0.0 2.5e-57 194.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|297526866|ref|YP_003668890.1| - 1.1e-27 96.8 0.1 1.4e-27 96.4 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|297526866|ref|YP_003668890.1| - 1.8e-19 70.0 0.0 8.7e-19 67.7 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|297526866|ref|YP_003668890.1| - 3.2e-17 62.6 0.0 3.8e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|297526866|ref|YP_003668890.1| - 1e-14 54.8 0.0 1.5e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|297526866|ref|YP_003668890.1| - 3.7e-13 49.2 1.2 1.4e-11 44.1 1.2 2.7 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|297526866|ref|YP_003668890.1| - 1.1e-08 34.9 0.1 8.1e-08 32.1 0.1 2.0 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|297526866|ref|YP_003668890.1| - 1.3e-08 34.6 0.2 2e-07 30.6 0.2 2.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|297526866|ref|YP_003668890.1| - 0.0061 16.5 0.3 0.086 12.7 0.3 2.4 1 1 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|297526866|ref|YP_003668890.1| - 0.051 13.1 0.1 0.48 9.9 0.1 2.1 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase CaMKII_AD PF08332.10 gi|297526866|ref|YP_003668890.1| - 0.065 13.4 0.1 0.18 12.0 0.0 1.6 2 0 0 2 2 2 0 Calcium/calmodulin dependent protein kinase II association domain NAD_binding_2 PF03446.15 gi|297526866|ref|YP_003668890.1| - 0.19 11.9 0.0 0.45 10.7 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_transf_4 PF13439.6 gi|297526867|ref|YP_003668891.1| - 9.1e-32 110.4 5.0 1.1e-29 103.6 3.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|297526867|ref|YP_003668891.1| - 6.8e-18 65.6 0.3 1.2e-17 64.8 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|297526867|ref|YP_003668891.1| - 4.5e-14 52.4 0.1 1.1e-13 51.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297526867|ref|YP_003668891.1| - 2.4e-09 37.7 0.0 5.1e-08 33.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|297526867|ref|YP_003668891.1| - 0.0011 18.8 2.5 0.015 15.0 0.0 2.3 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|297526867|ref|YP_003668891.1| - 0.017 15.1 0.1 0.053 13.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like Phi-29_GP4 PF05464.11 gi|297526868|ref|YP_003668892.1| - 0.018 15.3 0.1 0.041 14.1 0.1 1.5 1 0 0 1 1 1 0 Phi-29-like late genes activator (early protein GP4) Glycos_transf_1 PF00534.20 gi|297526869|ref|YP_003668893.1| - 6.4e-18 64.9 0.0 9.5e-18 64.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297526869|ref|YP_003668893.1| - 1.3e-12 48.3 0.0 2e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|297526871|ref|YP_003668895.1| - 1.3e-25 90.4 0.0 1.8e-25 89.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|297526871|ref|YP_003668895.1| - 7.7e-10 38.9 0.0 1.4e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|297526871|ref|YP_003668895.1| - 2e-08 33.9 0.1 5.1e-08 32.5 0.1 1.6 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_24 PF13578.6 gi|297526871|ref|YP_003668895.1| - 0.00043 21.3 0.0 0.0011 20.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|297526871|ref|YP_003668895.1| - 0.0039 17.0 0.0 0.0064 16.2 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase PCMT PF01135.19 gi|297526871|ref|YP_003668895.1| - 0.17 11.6 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PCI PF01399.27 gi|297526871|ref|YP_003668895.1| - 0.6 10.6 2.3 7.5 7.1 0.2 2.5 2 1 0 2 2 2 0 PCI domain Glycos_transf_1 PF00534.20 gi|297526872|ref|YP_003668896.1| - 2.2e-18 66.4 0.0 1.8e-17 63.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297526872|ref|YP_003668896.1| - 3.3e-14 53.5 0.0 6.4e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|297526872|ref|YP_003668896.1| - 0.067 13.6 0.0 0.23 11.9 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferases group 1 Spore-coat_CotD PF11122.8 gi|297526873|ref|YP_003668897.1| - 0.0093 16.8 0.0 0.011 16.6 0.0 1.0 1 0 0 1 1 1 1 Inner spore coat protein D Glyco_transf_4 PF13439.6 gi|297526874|ref|YP_003668898.1| - 0.0003 20.8 0.0 0.00034 20.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase Family 4 betaPIX_CC PF16523.5 gi|297526876|ref|YP_003668900.1| - 0.68 9.8 3.6 1.3 8.9 2.1 2.1 2 1 0 2 2 2 0 betaPIX coiled coil Sulfatase PF00884.23 gi|297526877|ref|YP_003668901.1| - 3.2e-19 69.4 0.0 8.9e-19 68.0 0.0 1.7 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|297526877|ref|YP_003668901.1| - 7.3e-05 22.5 0.1 0.0029 17.3 0.0 2.2 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 gi|297526877|ref|YP_003668901.1| - 0.0047 17.2 0.1 0.012 15.8 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF4994 PF16385.5 gi|297526877|ref|YP_003668901.1| - 0.0052 16.7 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF229 PF02995.17 gi|297526877|ref|YP_003668901.1| - 0.17 10.4 0.1 0.28 9.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_1 PF00534.20 gi|297526878|ref|YP_003668902.1| - 2e-10 40.5 0.0 4.3e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297526878|ref|YP_003668902.1| - 4.2e-07 30.4 0.0 8.3e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phosphodiest PF01663.22 gi|297526879|ref|YP_003668903.1| - 6.1e-26 91.9 0.0 7.5e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase ApoB100_C PF12491.8 gi|297526879|ref|YP_003668903.1| - 2.1 8.4 5.4 18 5.4 0.1 3.5 3 0 0 3 3 3 0 Apolipoprotein B100 C terminal Polysacc_deac_1 PF01522.21 gi|297526880|ref|YP_003668904.1| - 4.9e-20 71.7 0.0 8.9e-20 70.8 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|297526880|ref|YP_003668904.1| - 0.0016 17.7 0.0 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glyco_trans_1_4 PF13692.6 gi|297526881|ref|YP_003668905.1| - 5.8e-22 78.6 0.1 7.2e-21 75.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|297526881|ref|YP_003668905.1| - 1e-20 74.0 0.0 2e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|297526882|ref|YP_003668906.1| - 3.5e-30 105.0 0.0 6.2e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|297526882|ref|YP_003668906.1| - 1.3e-23 84.1 0.0 2.1e-23 83.4 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|297526882|ref|YP_003668906.1| - 7.2e-13 48.9 0.4 1.3e-12 48.0 0.4 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|297526882|ref|YP_003668906.1| - 0.00018 21.1 0.0 0.0014 18.2 0.0 2.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|297526882|ref|YP_003668906.1| - 0.055 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.6 gi|297526882|ref|YP_003668906.1| - 0.1 13.1 0.0 0.22 12.1 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 2 UPF0093 PF03653.13 gi|297526882|ref|YP_003668906.1| - 0.11 12.8 2.4 0.18 12.0 2.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0093) dTDP_sugar_isom PF00908.17 gi|297526883|ref|YP_003668907.1| - 3.7e-75 251.3 0.0 4.1e-75 251.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase RmlD_sub_bind PF04321.17 gi|297526884|ref|YP_003668908.1| - 2.8e-79 266.2 0.0 3.3e-79 266.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|297526884|ref|YP_003668908.1| - 1.8e-22 80.0 0.0 2.6e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|297526884|ref|YP_003668908.1| - 6.6e-17 61.9 0.0 9e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|297526884|ref|YP_003668908.1| - 6.9e-11 41.8 1.5 6.9e-11 41.8 1.5 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|297526884|ref|YP_003668908.1| - 1.4e-05 24.4 0.0 3.7e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Male sterility protein Epimerase PF01370.21 gi|297526885|ref|YP_003668909.1| - 1.6e-39 135.8 0.0 2e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|297526885|ref|YP_003668909.1| - 7.4e-25 88.0 0.0 1.2e-24 87.3 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|297526885|ref|YP_003668909.1| - 5.7e-16 58.5 0.0 7.5e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|297526885|ref|YP_003668909.1| - 2.8e-12 46.2 0.0 3.6e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|297526885|ref|YP_003668909.1| - 3.4e-08 33.6 0.0 6.2e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|297526885|ref|YP_003668909.1| - 1.5e-07 30.8 0.0 2.5e-06 26.9 0.0 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|297526885|ref|YP_003668909.1| - 7.8e-07 28.5 0.8 0.0079 15.4 0.0 2.7 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|297526885|ref|YP_003668909.1| - 0.0013 18.4 0.1 0.0073 15.9 0.1 2.1 2 1 0 3 3 3 1 NmrA-like family adh_short PF00106.25 gi|297526885|ref|YP_003668909.1| - 0.013 15.0 0.0 0.025 14.0 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Methyltransf_FA PF12248.8 gi|297526885|ref|YP_003668909.1| - 0.029 14.7 0.0 13 6.2 0.0 2.5 2 0 0 2 2 2 0 Farnesoic acid 0-methyl transferase KR PF08659.10 gi|297526885|ref|YP_003668909.1| - 0.035 14.0 0.1 0.098 12.6 0.0 1.7 2 0 0 2 2 2 0 KR domain SH3_14 PF18343.1 gi|297526885|ref|YP_003668909.1| - 0.041 14.0 0.2 0.22 11.6 0.1 2.0 1 1 1 2 2 2 0 Dda helicase SH3 domain UDPG_MGDP_dh_N PF03721.14 gi|297526885|ref|YP_003668909.1| - 0.22 11.1 0.2 0.49 9.9 0.1 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NTP_transferase PF00483.23 gi|297526886|ref|YP_003668910.1| - 1.5e-55 188.5 0.0 1.9e-55 188.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|297526886|ref|YP_003668910.1| - 2.7e-09 37.6 0.0 3.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|297526886|ref|YP_003668910.1| - 3.9e-06 26.4 8.7 0.0063 16.2 3.7 4.3 1 1 1 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|297526886|ref|YP_003668910.1| - 8e-05 21.7 0.1 0.00011 21.3 0.1 1.1 1 0 0 1 1 1 1 L-fucokinase DUF4954 PF16314.5 gi|297526886|ref|YP_003668910.1| - 0.014 13.6 1.9 0.028 12.6 1.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) dTDP_sugar_isom PF00908.17 gi|297526887|ref|YP_003668911.1| - 1e-47 162.0 0.0 1.2e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Thr_dehydrat_C PF00585.18 gi|297526889|ref|YP_003668913.1| - 0.055 13.2 0.0 0.23 11.2 0.0 1.9 2 0 0 2 2 2 0 C-terminal regulatory domain of Threonine dehydratase Transp_cyt_pur PF02133.15 gi|297526890|ref|YP_003668914.1| - 9.7e-34 116.9 30.1 1.2e-33 116.5 30.1 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin US30 PF17624.2 gi|297526890|ref|YP_003668914.1| - 0.0077 15.3 0.1 0.0077 15.3 0.1 1.6 2 0 0 2 2 2 1 Family of unknown function MazE_antitoxin PF04014.18 gi|297526891|ref|YP_003668915.1| - 1.9e-11 43.6 1.6 2.6e-11 43.2 1.6 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|297526891|ref|YP_003668915.1| - 0.00012 22.0 0.1 0.00016 21.6 0.1 1.2 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like PrlF_antitoxin PF15937.5 gi|297526891|ref|YP_003668915.1| - 0.13 12.8 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|297526892|ref|YP_003668916.1| - 8.7e-21 74.7 0.7 9.8e-21 74.5 0.7 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|297526892|ref|YP_003668916.1| - 7e-05 23.6 0.0 8.8e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 PIN domain CcdA PF07362.12 gi|297526893|ref|YP_003668917.1| - 1.1e-06 29.0 0.4 1.6e-06 28.4 0.4 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.11 gi|297526893|ref|YP_003668917.1| - 0.021 15.6 2.9 0.021 15.6 2.9 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor HEPN PF05168.14 gi|297526895|ref|YP_003668919.1| - 2.3e-23 82.5 0.5 2.7e-23 82.3 0.5 1.1 1 0 0 1 1 1 1 HEPN domain DUF1771 PF08590.10 gi|297526895|ref|YP_003668919.1| - 0.00082 19.7 0.3 0.0017 18.7 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) NTP_transf_2 PF01909.23 gi|297526896|ref|YP_003668920.1| - 7.3e-13 48.6 0.0 8.3e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|297526896|ref|YP_003668920.1| - 1.2e-09 38.1 0.0 1.5e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|297526896|ref|YP_003668920.1| - 0.00018 21.7 0.0 0.00023 21.3 0.0 1.2 1 1 0 1 1 1 1 DNA polymerase beta palm MdcG PF10620.9 gi|297526896|ref|YP_003668920.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG Lactamase_B PF00753.27 gi|297526898|ref|YP_003668922.1| - 5.6e-13 49.3 0.6 8.4e-13 48.8 0.6 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|297526898|ref|YP_003668922.1| - 5e-12 45.7 0.0 8.1e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|297526898|ref|YP_003668922.1| - 0.00091 19.2 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|297526898|ref|YP_003668922.1| - 0.0027 17.2 0.0 0.004 16.6 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain CcdA PF07362.12 gi|297526899|ref|YP_003668923.1| - 4.1e-05 23.9 0.2 0.0001 22.6 0.1 1.6 1 1 1 2 2 2 1 Post-segregation antitoxin CcdA NBD94 PF16830.5 gi|297526899|ref|YP_003668923.1| - 0.018 15.4 0.4 0.018 15.4 0.4 1.1 1 0 0 1 1 1 0 Nucleotide-Binding Domain 94 of RH Type2_restr_D3 PF16902.5 gi|297526899|ref|YP_003668923.1| - 0.032 14.1 1.1 0.09 12.7 0.8 1.8 1 1 1 2 2 2 0 Type-2 restriction enzyme D3 domain DUF4175 PF13779.6 gi|297526900|ref|YP_003668924.1| - 0.07 11.0 0.1 0.095 10.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Dicty_REP PF05086.12 gi|297526900|ref|YP_003668924.1| - 1.3 6.9 4.2 2.2 6.2 4.2 1.3 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Shisa PF13908.6 gi|297526900|ref|YP_003668924.1| - 2.4 8.4 5.6 3.9 7.7 5.6 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator HEPN PF05168.14 gi|297526901|ref|YP_003668925.1| - 2.9e-25 88.7 1.9 3.4e-25 88.5 1.9 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|297526902|ref|YP_003668926.1| - 2.1e-13 50.3 0.3 3e-13 49.9 0.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|297526902|ref|YP_003668926.1| - 2.7e-12 46.6 0.1 3.5e-12 46.2 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|297526902|ref|YP_003668926.1| - 0.0022 18.2 0.0 0.0026 17.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm Nrap PF03813.14 gi|297526902|ref|YP_003668926.1| - 0.098 12.7 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Nrap protein domain 1 DUF2179 PF10035.9 gi|297526902|ref|YP_003668926.1| - 0.14 11.9 0.2 0.33 10.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) Amidohydro_1 PF01979.20 gi|297526903|ref|YP_003668927.1| - 8e-26 91.2 0.4 1.1e-25 90.7 0.4 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|297526903|ref|YP_003668927.1| - 1.8e-12 47.5 0.3 1.1e-05 25.1 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family SIS PF01380.22 gi|297526904|ref|YP_003668928.1| - 4.3e-40 136.6 0.8 8.4e-25 87.1 0.5 2.6 2 1 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|297526904|ref|YP_003668928.1| - 2e-17 63.7 0.0 9e-17 61.5 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|297526904|ref|YP_003668928.1| - 4.9e-14 52.3 0.0 1.1e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|297526904|ref|YP_003668928.1| - 0.0002 20.3 0.0 0.0003 19.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|297526904|ref|YP_003668928.1| - 0.00033 20.7 2.1 0.0038 17.2 0.6 2.7 2 1 1 3 3 3 1 SIS domain bact-PGI_C PF10432.9 gi|297526904|ref|YP_003668928.1| - 0.0059 16.7 0.0 0.029 14.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal SIS domain DegS PF05384.11 gi|297526904|ref|YP_003668928.1| - 0.066 12.7 2.9 0.28 10.7 1.3 2.2 2 0 0 2 2 2 0 Sensor protein DegS Glyco_hydro_130 PF04041.13 gi|297526905|ref|YP_003668929.1| - 1e-83 280.9 1.4 1.2e-83 280.7 1.4 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase Methyltransf_23 PF13489.6 gi|297526907|ref|YP_003668931.1| - 3.2e-11 43.3 0.0 4.2e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297526907|ref|YP_003668931.1| - 1.8e-09 38.1 0.0 4.5e-09 36.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|297526907|ref|YP_003668931.1| - 6.4e-09 36.5 0.0 1.3e-08 35.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297526907|ref|YP_003668931.1| - 8.1e-07 29.7 0.0 1.4e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|297526907|ref|YP_003668931.1| - 0.008 15.5 0.1 0.016 14.5 0.1 1.5 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_31 PF13847.6 gi|297526907|ref|YP_003668931.1| - 0.016 15.0 0.2 0.033 14.0 0.1 1.7 2 1 0 2 2 2 0 Methyltransferase domain NodS PF05401.11 gi|297526907|ref|YP_003668931.1| - 0.063 12.9 0.0 0.099 12.2 0.0 1.4 1 1 0 1 1 1 0 Nodulation protein S (NodS) UPF0180 PF03698.13 gi|297526907|ref|YP_003668931.1| - 0.097 12.9 0.1 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Asparaginase_2 PF01112.18 gi|297526908|ref|YP_003668932.1| - 4.3e-78 262.4 0.0 5.2e-78 262.2 0.0 1.0 1 0 0 1 1 1 1 Asparaginase SpoIIM PF01944.17 gi|297526909|ref|YP_003668933.1| - 2.5e-10 40.6 13.2 2.5e-10 40.6 13.2 3.5 2 1 1 3 3 3 1 Stage II sporulation protein M DUF575 PF04746.12 gi|297526909|ref|YP_003668933.1| - 0.12 12.6 1.0 0.37 11.1 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF575) GHL6 PF14871.6 gi|297526910|ref|YP_003668934.1| - 3e-44 150.5 0.0 6.3e-44 149.4 0.0 1.6 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_42M PF08532.10 gi|297526910|ref|YP_003668934.1| - 1.4e-12 47.6 0.1 4.3e-10 39.5 0.1 2.3 2 0 0 2 2 2 2 Beta-galactosidase trimerisation domain FBA PF04300.13 gi|297526910|ref|YP_003668934.1| - 0.083 12.6 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 F-box associated region ROK PF00480.20 gi|297526911|ref|YP_003668935.1| - 5.2e-52 177.2 0.0 6.2e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 ROK family FtsA PF14450.6 gi|297526911|ref|YP_003668935.1| - 0.0042 17.5 0.0 0.033 14.6 0.0 2.1 1 1 0 1 1 1 1 Cell division protein FtsA Plasmid_parti PF01672.16 gi|297526911|ref|YP_003668935.1| - 0.024 15.3 0.6 0.063 13.9 0.0 2.0 2 0 0 2 2 2 0 Putative plasmid partition protein Abhydrolase_1 PF00561.20 gi|297526912|ref|YP_003668936.1| - 4.3e-16 59.3 0.0 1.1e-07 31.8 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|297526912|ref|YP_003668936.1| - 3.3e-10 40.9 0.1 9.1e-07 29.7 0.2 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|297526912|ref|YP_003668936.1| - 1.8e-09 37.3 0.0 0.00021 20.6 0.0 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 gi|297526912|ref|YP_003668936.1| - 0.00016 21.6 0.0 0.00032 20.6 0.0 1.4 1 1 0 1 1 1 1 Serine hydrolase Abhydrolase_5 PF12695.7 gi|297526912|ref|YP_003668936.1| - 0.00082 19.2 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|297526912|ref|YP_003668936.1| - 0.0016 18.1 0.0 0.0055 16.4 0.0 1.7 2 0 0 2 2 2 1 Serine hydrolase (FSH1) DLH PF01738.18 gi|297526912|ref|YP_003668936.1| - 0.0086 15.6 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 gi|297526912|ref|YP_003668936.1| - 0.02 14.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase UPF0227 PF05728.12 gi|297526912|ref|YP_003668936.1| - 0.048 13.6 0.1 0.071 13.1 0.1 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0227) Esterase PF00756.20 gi|297526912|ref|YP_003668936.1| - 0.057 13.0 0.0 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 Putative esterase Abhydrolase_4 PF08386.10 gi|297526912|ref|YP_003668936.1| - 0.15 12.2 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein HTH_3 PF01381.22 gi|297526913|ref|YP_003668937.1| - 3.5e-05 23.8 0.1 7.1e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix DUF134 PF02001.16 gi|297526913|ref|YP_003668937.1| - 0.0027 18.2 0.1 0.091 13.3 0.0 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF134 HTH_23 PF13384.6 gi|297526913|ref|YP_003668937.1| - 0.0036 17.0 0.0 0.0089 15.8 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|297526913|ref|YP_003668937.1| - 0.014 15.3 0.0 0.025 14.6 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Cro PF09048.10 gi|297526913|ref|YP_003668937.1| - 0.017 15.1 0.0 0.045 13.8 0.0 1.7 1 0 0 1 1 1 0 Cro HTH_24 PF13412.6 gi|297526913|ref|YP_003668937.1| - 0.11 12.0 0.5 0.41 10.2 0.0 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_1 PF00126.27 gi|297526913|ref|YP_003668937.1| - 0.17 11.9 0.0 0.55 10.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family tRNA-synt_1g PF09334.11 gi|297526914|ref|YP_003668938.1| - 6.6e-97 324.7 6.4 3.2e-51 174.3 0.5 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|297526914|ref|YP_003668938.1| - 2.1e-23 82.5 6.4 5.1e-13 48.1 2.1 4.0 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|297526914|ref|YP_003668938.1| - 5e-10 39.2 3.7 8e-07 28.7 0.2 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|297526914|ref|YP_003668938.1| - 1.4e-07 31.6 1.2 5.7e-07 29.6 0.0 2.4 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|297526914|ref|YP_003668938.1| - 2.9e-05 23.2 1.3 0.0005 19.1 0.0 3.0 2 2 1 3 3 3 1 tRNA synthetases class I (K) DUF4413 PF14372.6 gi|297526914|ref|YP_003668938.1| - 0.027 14.8 4.1 2.2 8.7 0.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4413) LIM PF00412.22 gi|297526914|ref|YP_003668938.1| - 0.072 13.3 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 LIM domain RPA_C PF08784.11 gi|297526914|ref|YP_003668938.1| - 0.2 12.4 0.9 3.7 8.3 0.0 3.0 3 0 0 3 3 3 0 Replication protein A C terminal Radical_SAM PF04055.21 gi|297526915|ref|YP_003668939.1| - 7.7e-16 58.9 0.0 2.6e-15 57.2 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily DUF5092 PF17010.5 gi|297526916|ref|YP_003668940.1| - 0.0021 18.0 0.5 0.0024 17.8 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5092) GHMP_kinases_C PF08544.13 gi|297526916|ref|YP_003668940.1| - 0.0083 16.5 0.1 0.011 16.1 0.1 1.5 1 1 0 1 1 1 1 GHMP kinases C terminal Radical_SAM PF04055.21 gi|297526916|ref|YP_003668940.1| - 0.053 13.9 0.7 0.099 13.0 0.7 1.6 1 1 0 1 1 1 0 Radical SAM superfamily PH_3 PF14593.6 gi|297526916|ref|YP_003668940.1| - 0.058 13.5 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 PH domain Rrf2 PF02082.20 gi|297526917|ref|YP_003668941.1| - 0.0045 17.3 0.2 0.056 13.8 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 gi|297526917|ref|YP_003668941.1| - 0.0064 16.3 0.1 0.017 14.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|297526917|ref|YP_003668941.1| - 0.026 14.4 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|297526917|ref|YP_003668941.1| - 0.029 14.5 0.2 0.087 12.9 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|297526917|ref|YP_003668941.1| - 0.029 14.6 0.1 0.06 13.5 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|297526917|ref|YP_003668941.1| - 0.032 14.1 0.4 0.032 14.1 0.4 2.3 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|297526917|ref|YP_003668941.1| - 0.082 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|297526917|ref|YP_003668941.1| - 0.1 12.5 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family 4HBT PF03061.22 gi|297526918|ref|YP_003668942.1| - 0.002 18.4 0.0 0.0027 18.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF5374 PF17344.2 gi|297526918|ref|YP_003668942.1| - 0.19 11.7 0.1 0.31 11.0 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5374) Peptidase_M55 PF04951.13 gi|297526920|ref|YP_003668944.1| - 1.2e-84 283.9 0.0 1.3e-84 283.7 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Creatininase PF02633.14 gi|297526920|ref|YP_003668944.1| - 0.095 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Creatinine amidohydrolase OAD_beta PF03977.13 gi|297526921|ref|YP_003668945.1| - 1.3e-158 527.5 26.3 1.5e-158 527.3 26.3 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit DUF1029 PF06269.12 gi|297526921|ref|YP_003668945.1| - 0.032 14.3 0.1 0.21 11.8 0.1 2.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1029) OAD_gamma PF04277.13 gi|297526922|ref|YP_003668946.1| - 1.3e-12 48.1 0.3 1.7e-12 47.8 0.3 1.2 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain COX4 PF02936.14 gi|297526922|ref|YP_003668946.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV LDcluster4 PF18306.1 gi|297526923|ref|YP_003668947.1| - 8.8e-16 57.9 0.0 9.6e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family TPALS PF18178.1 gi|297526923|ref|YP_003668947.1| - 0.041 13.3 0.1 1.5 8.2 0.1 2.6 2 1 1 3 3 3 0 TIR- and PNP-associating SLOG family LSDAT_prok PF18171.1 gi|297526923|ref|YP_003668947.1| - 0.059 12.6 0.0 0.31 10.3 0.0 1.8 2 0 0 2 2 2 0 SLOG in TRPM, prokaryote TFX_C PF14601.6 gi|297526925|ref|YP_003668949.1| - 3.6e-21 74.9 0.1 5.3e-21 74.4 0.1 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4_2 PF08281.12 gi|297526925|ref|YP_003668949.1| - 0.00018 21.1 1.3 0.00023 20.8 0.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|297526925|ref|YP_003668949.1| - 0.008 15.9 1.4 0.016 15.0 0.1 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|297526925|ref|YP_003668949.1| - 0.022 14.6 0.2 0.061 13.1 0.1 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.6 gi|297526925|ref|YP_003668949.1| - 0.043 13.9 0.3 0.092 12.9 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|297526925|ref|YP_003668949.1| - 0.084 12.4 0.3 0.21 11.1 0.3 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.12 gi|297526925|ref|YP_003668949.1| - 0.23 11.4 2.1 0.53 10.2 0.2 2.3 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) MerR_2 PF13591.6 gi|297526927|ref|YP_003668951.1| - 0.049 13.5 0.2 0.072 13.0 0.2 1.5 1 1 0 1 1 1 0 MerR HTH family regulatory protein Ub-RnfH PF03658.14 gi|297526928|ref|YP_003668952.1| - 0.013 15.9 0.1 0.016 15.6 0.1 1.3 1 0 0 1 1 1 0 RnfH family Ubiquitin DUF3413 PF11893.8 gi|297526929|ref|YP_003668953.1| - 0.016 14.4 0.6 0.84 8.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) DEAD PF00270.29 gi|297526930|ref|YP_003668954.1| - 1.4e-31 109.6 0.0 2.3e-31 108.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|297526930|ref|YP_003668954.1| - 1.1e-16 61.1 0.0 2.5e-14 53.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|297526930|ref|YP_003668954.1| - 2.3e-14 53.9 0.4 9.5e-14 51.9 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|297526930|ref|YP_003668954.1| - 8.4e-06 25.9 0.0 1.5e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 gi|297526930|ref|YP_003668954.1| - 0.0028 17.2 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|297526930|ref|YP_003668954.1| - 0.0066 16.8 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|297526930|ref|YP_003668954.1| - 0.0072 16.1 0.0 0.022 14.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain PmbA_TldD PF01523.16 gi|297526932|ref|YP_003668956.1| - 1.1e-52 179.6 1.4 1.4e-52 179.3 1.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|297526933|ref|YP_003668957.1| - 4.1e-46 158.1 0.8 5.1e-46 157.7 0.8 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase BPL_LplA_LipB PF03099.19 gi|297526934|ref|YP_003668958.1| - 3.1e-08 33.6 0.1 5.5e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|297526934|ref|YP_003668958.1| - 0.0011 18.9 0.2 0.0018 18.2 0.2 1.3 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Rrf2 PF02082.20 gi|297526934|ref|YP_003668958.1| - 0.037 14.4 0.2 0.23 11.8 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator CxxCxxCC PF03692.15 gi|297526935|ref|YP_003668959.1| - 1.6e-07 31.9 0.4 4.4e-07 30.5 0.4 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain CTP_transf_like PF01467.26 gi|297526936|ref|YP_003668960.1| - 3.7e-11 43.4 0.1 5.3e-11 42.9 0.1 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|297526936|ref|YP_003668960.1| - 0.00092 18.5 0.3 0.034 13.4 0.4 2.0 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase Peptidase_M50 PF02163.22 gi|297526937|ref|YP_003668961.1| - 8.7e-09 35.0 8.0 1.8e-05 24.2 0.7 3.2 2 1 1 3 3 3 3 Peptidase family M50 CitMHS PF03600.16 gi|297526939|ref|YP_003668963.1| - 0.0011 18.3 2.8 0.0023 17.2 3.0 1.4 1 1 0 1 1 1 1 Citrate transporter DUF92 PF01940.16 gi|297526939|ref|YP_003668963.1| - 0.085 12.3 0.1 3.3 7.1 0.0 2.2 1 1 1 2 2 2 0 Integral membrane protein DUF92 Srg PF02118.21 gi|297526939|ref|YP_003668963.1| - 0.51 10.0 8.8 1.8 8.2 0.4 2.7 2 1 1 3 3 3 0 Srg family chemoreceptor DUF2207 PF09972.9 gi|297526939|ref|YP_003668963.1| - 0.66 8.7 3.4 4 6.1 2.5 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) MpPF26 PF07666.11 gi|297526939|ref|YP_003668963.1| - 1.3 9.1 11.1 2 8.6 5.3 2.4 2 0 0 2 2 2 0 M penetrans paralogue family 26 RNA_pol_Rpb1_3 PF04983.18 gi|297526940|ref|YP_003668964.1| - 0.046 13.6 0.0 0.084 12.8 0.0 1.3 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 3 NTP_transf_2 PF01909.23 gi|297526943|ref|YP_003668967.1| - 0.0002 21.6 0.0 0.00021 21.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|297526943|ref|YP_003668967.1| - 0.051 13.7 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase HD PF01966.22 gi|297526944|ref|YP_003668968.1| - 3.4e-10 40.2 0.3 1.2e-09 38.4 0.3 2.0 1 0 0 1 1 1 1 HD domain 3HCDH PF00725.22 gi|297526944|ref|YP_003668968.1| - 0.13 12.9 0.0 16 6.2 0.0 2.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DUF2627 PF11118.8 gi|297526945|ref|YP_003668969.1| - 0.16 12.6 2.6 6.5 7.4 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2627) HTH_24 PF13412.6 gi|297526946|ref|YP_003668970.1| - 6.8e-07 28.8 0.3 8.1e-07 28.5 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|297526946|ref|YP_003668970.1| - 2e-06 27.6 0.2 2.4e-06 27.4 0.2 1.1 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|297526946|ref|YP_003668970.1| - 6.4e-06 25.9 0.0 8e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_12 PF08461.10 gi|297526946|ref|YP_003668970.1| - 2.9e-05 23.9 0.1 4.5e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|297526946|ref|YP_003668970.1| - 0.00012 21.9 0.1 0.00016 21.5 0.1 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HARE-HTH PF05066.13 gi|297526946|ref|YP_003668970.1| - 0.00028 21.2 0.0 0.00038 20.8 0.0 1.3 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain MarR_2 PF12802.7 gi|297526946|ref|YP_003668970.1| - 0.00029 20.7 0.0 0.00036 20.4 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|297526946|ref|YP_003668970.1| - 0.00046 20.2 0.0 0.00054 20.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|297526946|ref|YP_003668970.1| - 0.001 19.4 0.0 0.0011 19.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|297526946|ref|YP_003668970.1| - 0.0014 18.4 0.0 0.0019 18.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rio2_N PF09202.11 gi|297526946|ref|YP_003668970.1| - 0.0015 18.7 0.0 0.0017 18.5 0.0 1.1 1 0 0 1 1 1 1 Rio2, N-terminal HTH_45 PF14947.6 gi|297526946|ref|YP_003668970.1| - 0.0018 18.2 0.1 0.0021 18.0 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HrcA_DNA-bdg PF03444.15 gi|297526946|ref|YP_003668970.1| - 0.0041 16.7 0.2 0.0046 16.6 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2250 PF10007.9 gi|297526946|ref|YP_003668970.1| - 0.0086 16.2 0.2 0.0093 16.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Type2_restr_D3 PF16902.5 gi|297526946|ref|YP_003668970.1| - 0.011 15.6 0.1 0.02 14.8 0.1 1.4 1 1 0 1 1 1 0 Type-2 restriction enzyme D3 domain HTH_Mga PF08280.11 gi|297526946|ref|YP_003668970.1| - 0.014 15.4 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF2089 PF09862.9 gi|297526946|ref|YP_003668970.1| - 0.023 14.7 0.1 0.028 14.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_28 PF13518.6 gi|297526946|ref|YP_003668970.1| - 0.027 14.6 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF977 PF06163.11 gi|297526946|ref|YP_003668970.1| - 0.035 14.1 0.0 0.036 14.0 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_27 PF13463.6 gi|297526946|ref|YP_003668970.1| - 0.036 14.6 0.0 0.046 14.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|297526946|ref|YP_003668970.1| - 0.053 13.3 0.0 0.068 12.9 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|297526946|ref|YP_003668970.1| - 0.057 13.2 0.1 0.068 13.0 0.1 1.1 1 0 0 1 1 1 0 LexA DNA binding domain FaeA PF04703.12 gi|297526946|ref|YP_003668970.1| - 0.06 13.7 0.0 0.072 13.5 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein TBPIP PF07106.13 gi|297526946|ref|YP_003668970.1| - 0.061 13.3 0.2 0.082 12.8 0.2 1.3 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain DUF3489 PF11994.8 gi|297526946|ref|YP_003668970.1| - 0.075 13.1 0.1 0.096 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) DUF4364 PF14277.6 gi|297526946|ref|YP_003668970.1| - 0.088 12.6 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|297526946|ref|YP_003668970.1| - 0.094 12.8 0.0 0.099 12.7 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_Crp_2 PF13545.6 gi|297526946|ref|YP_003668970.1| - 0.13 12.3 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Glyco_hydro_2 PF00703.21 gi|297526948|ref|YP_003668972.1| - 0.02 15.6 0.1 0.034 14.8 0.1 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 2 NPCBM_assoc PF10633.9 gi|297526948|ref|YP_003668972.1| - 0.035 14.4 0.8 0.12 12.6 0.2 2.1 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2808 PF10989.8 gi|297526948|ref|YP_003668972.1| - 0.044 13.8 0.0 1.7 8.6 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2808) Mito_fiss_Elm1 PF06258.11 gi|297526948|ref|YP_003668972.1| - 0.16 11.1 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial fission ELM1 Pilin_N PF07790.11 gi|297526949|ref|YP_003668973.1| - 0.0012 19.7 3.1 0.0014 19.5 3.1 1.1 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4352 PF11611.8 gi|297526949|ref|YP_003668973.1| - 0.023 15.0 0.5 0.027 14.8 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) gp12-short_mid PF09089.10 gi|297526949|ref|YP_003668973.1| - 0.046 13.9 0.1 0.058 13.6 0.1 1.2 1 0 0 1 1 1 0 Phage short tail fibre protein gp12, middle domain BsuPI PF12690.7 gi|297526950|ref|YP_003668974.1| - 0.014 15.4 0.1 0.42 10.7 0.0 2.4 2 0 0 2 2 2 0 Intracellular proteinase inhibitor Imm53 PF15580.6 gi|297526950|ref|YP_003668974.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Immunity protein 53 MacB_PCD PF12704.7 gi|297526950|ref|YP_003668974.1| - 2.4 8.5 7.2 4.3 7.6 4.0 2.1 1 1 1 2 2 2 0 MacB-like periplasmic core domain PMT PF02366.18 gi|297526951|ref|YP_003668975.1| - 2.4e-07 30.6 14.6 2.4e-07 30.6 14.6 3.3 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.6 gi|297526951|ref|YP_003668975.1| - 5.9e-05 23.3 12.5 5.9e-05 23.3 12.5 2.8 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2393 PF09624.10 gi|297526952|ref|YP_003668976.1| - 0.00087 19.3 0.2 0.0011 19.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2393) DUF11 PF01345.18 gi|297526952|ref|YP_003668976.1| - 0.0014 18.9 0.0 0.0023 18.2 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF11 Pilin_N PF07790.11 gi|297526952|ref|YP_003668976.1| - 0.0019 19.1 7.4 0.0046 17.8 2.9 2.1 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal GH114_assoc PF14741.6 gi|297526952|ref|YP_003668976.1| - 0.095 12.9 0.2 3.9 7.7 0.1 2.3 1 1 1 2 2 2 0 N-terminal glycosyl-hydrolase-114-associated domain T2SSF PF00482.23 gi|297526958|ref|YP_003668982.1| - 5.7e-17 61.8 9.1 1.4e-09 38.0 3.3 3.7 4 1 1 5 5 5 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|297526959|ref|YP_003668983.1| - 6.6e-48 163.1 0.0 9.8e-48 162.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|297526959|ref|YP_003668983.1| - 0.00069 20.1 0.0 0.0019 18.7 0.0 1.7 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|297526959|ref|YP_003668983.1| - 0.023 14.6 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|297526959|ref|YP_003668983.1| - 0.032 13.7 0.2 0.058 12.9 0.2 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|297526959|ref|YP_003668983.1| - 0.11 12.2 1.2 0.23 11.2 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|297526959|ref|YP_003668983.1| - 0.22 11.2 0.4 0.52 10.0 0.4 1.6 1 0 0 1 1 1 0 AAA domain V4R PF02830.18 gi|297526960|ref|YP_003668984.1| - 2.3e-08 33.9 0.1 4e-08 33.1 0.1 1.4 1 0 0 1 1 1 1 V4R domain ACT PF01842.25 gi|297526960|ref|YP_003668984.1| - 0.00021 21.0 0.1 0.00055 19.6 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|297526960|ref|YP_003668984.1| - 0.0031 18.1 0.0 0.0073 16.9 0.0 1.6 1 0 0 1 1 1 1 ACT domain DUF150 PF02576.17 gi|297526961|ref|YP_003668985.1| - 0.0049 17.3 0.2 0.02 15.3 0.1 2.1 2 0 0 2 2 2 1 RimP N-terminal domain DAP_B PF07930.12 gi|297526961|ref|YP_003668985.1| - 0.069 13.1 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 D-aminopeptidase, domain B ATPase PF06745.13 gi|297526964|ref|YP_003668988.1| - 1.6e-29 102.9 0.0 1.9e-29 102.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_22 PF13401.6 gi|297526964|ref|YP_003668988.1| - 1.9e-06 28.2 0.0 3.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|297526964|ref|YP_003668988.1| - 5e-05 22.8 0.1 0.00062 19.2 0.1 2.0 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain ATPase_2 PF01637.18 gi|297526964|ref|YP_003668988.1| - 0.00049 20.1 0.1 0.00067 19.6 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|297526964|ref|YP_003668988.1| - 0.00079 19.2 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|297526964|ref|YP_003668988.1| - 0.00084 19.9 1.3 0.0016 19.0 1.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|297526964|ref|YP_003668988.1| - 0.0009 19.7 0.0 0.0014 19.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|297526964|ref|YP_003668988.1| - 0.01 16.3 0.0 0.015 15.7 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|297526964|ref|YP_003668988.1| - 0.019 15.1 0.0 0.028 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RecA PF00154.21 gi|297526964|ref|YP_003668988.1| - 0.028 13.9 0.0 0.78 9.2 0.0 2.0 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_32 PF13654.6 gi|297526964|ref|YP_003668988.1| - 0.043 12.6 0.0 0.068 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|297526964|ref|YP_003668988.1| - 0.043 13.4 0.0 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|297526964|ref|YP_003668988.1| - 0.052 13.9 0.0 0.099 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Roc PF08477.13 gi|297526964|ref|YP_003668988.1| - 0.084 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|297526964|ref|YP_003668988.1| - 0.086 12.9 0.2 0.22 11.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|297526964|ref|YP_003668988.1| - 0.097 12.1 0.1 12 5.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein IstB_IS21 PF01695.17 gi|297526964|ref|YP_003668988.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|297526964|ref|YP_003668988.1| - 0.19 11.6 0.2 0.54 10.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ETRAMP PF09716.10 gi|297526965|ref|YP_003668989.1| - 7.1 6.8 7.7 32 4.7 7.5 2.2 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DHHA1 PF02272.19 gi|297526966|ref|YP_003668990.1| - 5.8e-09 36.5 0.1 1.8e-08 34.9 0.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|297526966|ref|YP_003668990.1| - 4.9e-05 23.5 0.0 8.1e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 DHH family SirA PF10747.9 gi|297526966|ref|YP_003668990.1| - 3.1 8.1 6.9 1.6 9.1 0.4 2.5 3 0 0 3 3 3 0 Sporulation inhibitor of replication protein SirA DUF429 PF04250.13 gi|297526967|ref|YP_003668991.1| - 0.00024 21.0 0.0 0.0016 18.3 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DAO PF01266.24 gi|297526968|ref|YP_003668992.1| - 6.6e-11 42.4 1.6 8.8e-05 22.2 1.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|297526968|ref|YP_003668992.1| - 2.3e-10 40.2 0.1 8.9e-08 31.6 0.5 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|297526968|ref|YP_003668992.1| - 5.1e-10 39.1 0.4 6e-05 22.4 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.12 gi|297526968|ref|YP_003668992.1| - 4.7e-09 35.8 0.4 3.8e-07 29.5 0.0 2.5 2 1 1 3 3 3 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|297526968|ref|YP_003668992.1| - 2.4e-08 33.8 1.0 2.2e-07 30.6 1.0 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|297526968|ref|YP_003668992.1| - 7.1e-07 28.3 0.6 9.2e-05 21.3 0.2 2.3 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|297526968|ref|YP_003668992.1| - 8.5e-07 28.5 0.2 1.8e-06 27.4 0.2 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|297526968|ref|YP_003668992.1| - 1.3e-06 27.9 0.1 2.8e-06 26.8 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|297526968|ref|YP_003668992.1| - 1.4e-06 28.7 0.3 0.0011 19.5 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|297526968|ref|YP_003668992.1| - 1.6e-06 27.5 0.3 2.6e-06 26.8 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|297526968|ref|YP_003668992.1| - 6.4e-06 25.3 0.1 0.021 13.7 0.0 2.4 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|297526968|ref|YP_003668992.1| - 3.6e-05 23.9 0.2 3.6e-05 23.9 0.2 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|297526968|ref|YP_003668992.1| - 0.00053 19.3 0.0 0.0012 18.1 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|297526968|ref|YP_003668992.1| - 0.0095 15.8 0.1 0.016 15.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|297526968|ref|YP_003668992.1| - 0.055 12.7 0.2 0.1 11.9 0.2 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|297526968|ref|YP_003668992.1| - 0.13 11.8 0.5 0.34 10.5 0.1 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.24 gi|297526968|ref|YP_003668992.1| - 0.15 11.3 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 gi|297526968|ref|YP_003668992.1| - 0.17 11.0 0.1 8.3 5.4 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) MobB PF03205.14 gi|297526969|ref|YP_003668993.1| - 2.5e-14 53.3 0.0 3.8e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|297526969|ref|YP_003668993.1| - 0.0052 16.8 0.0 0.0061 16.6 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|297526969|ref|YP_003668993.1| - 0.014 15.2 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain PYNP_C PF07831.13 gi|297526970|ref|YP_003668994.1| - 5.7e-16 57.9 0.5 5.3e-15 54.8 0.0 2.4 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.21 gi|297526970|ref|YP_003668994.1| - 1.1e-11 44.8 0.7 8.3e-11 42.0 0.6 2.2 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|297526970|ref|YP_003668994.1| - 2.2e-10 40.2 0.4 8.2e-10 38.4 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2254 PF10011.9 gi|297526970|ref|YP_003668994.1| - 0.00071 18.5 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) CDC48_N PF02359.18 gi|297526970|ref|YP_003668994.1| - 0.0029 17.7 0.0 0.007 16.5 0.0 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain OprF PF05736.11 gi|297526970|ref|YP_003668994.1| - 0.12 12.1 0.0 0.36 10.6 0.0 1.7 1 1 1 2 2 2 0 OprF membrane domain CBS PF00571.28 gi|297526971|ref|YP_003668995.1| - 2.6e-10 40.6 1.8 0.00028 21.3 0.0 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_C39_2 PF13529.6 gi|297526971|ref|YP_003668995.1| - 0.037 14.6 0.1 0.092 13.3 0.0 1.6 2 0 0 2 2 2 0 Peptidase_C39 like family ParBc PF02195.18 gi|297526971|ref|YP_003668995.1| - 0.08 13.3 0.6 0.25 11.7 0.3 1.9 2 0 0 2 2 2 0 ParB-like nuclease domain Glyco_trans_4_2 PF13477.6 gi|297526972|ref|YP_003668996.1| - 0.064 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like CDC50 PF03381.15 gi|297526972|ref|YP_003668996.1| - 0.15 11.5 0.1 0.45 10.0 0.0 1.7 3 0 0 3 3 3 0 LEM3 (ligand-effect modulator 3) family / CDC50 family Amidohydro_3 PF07969.11 gi|297526973|ref|YP_003668997.1| - 1.4e-69 235.8 0.0 1.9e-69 235.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|297526973|ref|YP_003668997.1| - 1.7e-07 30.9 0.1 0.0011 18.3 0.0 3.4 3 1 0 3 3 3 2 Amidohydrolase family PGM_PMM_I PF02878.16 gi|297526975|ref|YP_003668999.1| - 4.1e-30 104.3 0.0 1e-29 103.0 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|297526975|ref|YP_003668999.1| - 3.1e-18 66.3 0.0 8.3e-18 64.9 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|297526975|ref|YP_003668999.1| - 1.8e-09 37.6 0.0 4.5e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|297526975|ref|YP_003668999.1| - 0.005 17.0 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DBD_HTH PF18430.1 gi|297526975|ref|YP_003668999.1| - 0.15 11.9 0.2 0.41 10.5 0.2 1.7 1 0 0 1 1 1 0 Putative DNA-binding domain AdoMet_dc PF02675.15 gi|297526976|ref|YP_003669000.1| - 1.4e-33 115.3 0.0 1.7e-33 115.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase NAD_binding_8 PF13450.6 gi|297526977|ref|YP_003669001.1| - 0.0053 17.0 0.9 0.011 15.9 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|297526977|ref|YP_003669001.1| - 0.0084 14.8 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|297526977|ref|YP_003669001.1| - 0.017 14.3 0.0 0.047 12.9 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|297526977|ref|YP_003669001.1| - 0.044 13.0 0.0 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain DAO PF01266.24 gi|297526977|ref|YP_003669001.1| - 0.19 11.2 0.1 0.32 10.5 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase AsnC_trans_reg PF01037.21 gi|297526978|ref|YP_003669002.1| - 0.00016 21.6 0.1 0.0026 17.7 0.0 2.0 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain NusG PF02357.19 gi|297526978|ref|YP_003669002.1| - 0.067 13.7 0.1 0.094 13.2 0.1 1.2 1 0 0 1 1 1 0 Transcription termination factor nusG CHASE8 PF17152.4 gi|297526978|ref|YP_003669002.1| - 0.17 12.1 0.0 0.19 12.0 0.0 1.1 1 0 0 1 1 1 0 Periplasmic sensor domain TPP_enzyme_C PF02775.21 gi|297526979|ref|YP_003669003.1| - 2.7e-24 85.7 0.0 3.7e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|297526980|ref|YP_003669004.1| - 8.4e-75 251.5 0.2 1.2e-74 251.0 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|297526980|ref|YP_003669004.1| - 2.7e-30 104.7 0.0 6.4e-30 103.5 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|297526980|ref|YP_003669004.1| - 1.9e-06 27.8 0.0 5.2e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain RecO_N PF11967.8 gi|297526980|ref|YP_003669004.1| - 0.062 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Recombination protein O N terminal Fer4 PF00037.27 gi|297526981|ref|YP_003669005.1| - 1.7e-14 52.9 16.7 1.2e-08 34.4 5.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297526981|ref|YP_003669005.1| - 1.1e-10 41.5 10.3 1.4e-10 41.2 10.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297526981|ref|YP_003669005.1| - 8.2e-10 38.3 14.8 1.5e-05 24.8 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297526981|ref|YP_003669005.1| - 4.9e-08 33.0 21.1 2.3e-05 24.4 11.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|297526981|ref|YP_003669005.1| - 5.1e-08 33.0 19.6 2.3e-06 27.7 10.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297526981|ref|YP_003669005.1| - 4.4e-07 30.7 8.8 0.00071 20.5 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|297526981|ref|YP_003669005.1| - 5e-07 30.2 10.3 1.4e-06 28.8 10.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297526981|ref|YP_003669005.1| - 7e-07 29.0 11.3 0.0002 21.3 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|297526981|ref|YP_003669005.1| - 2e-05 25.0 2.8 0.042 14.4 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|297526981|ref|YP_003669005.1| - 0.00039 20.9 12.6 0.0027 18.2 1.7 2.5 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|297526981|ref|YP_003669005.1| - 0.00063 20.1 10.7 0.028 14.9 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|297526981|ref|YP_003669005.1| - 0.0019 18.6 10.7 0.084 13.3 2.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|297526981|ref|YP_003669005.1| - 0.034 14.9 12.2 0.34 11.7 3.1 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|297526981|ref|YP_003669005.1| - 1.3 9.2 7.3 1.9 8.6 0.7 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|297526981|ref|YP_003669005.1| - 1.9 9.4 12.2 0.79 10.6 2.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|297526982|ref|YP_003669006.1| - 9.9e-42 143.0 0.0 1.2e-41 142.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase O-antigen_lig PF13425.6 gi|297526983|ref|YP_003669007.1| - 0.0015 17.4 0.2 0.0019 17.1 0.2 1.1 1 0 0 1 1 1 1 O-antigen ligase like membrane protein Phage_holin_3_6 PF07332.11 gi|297526983|ref|YP_003669007.1| - 0.0018 18.3 0.4 0.0025 17.8 0.3 1.3 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2254 PF10011.9 gi|297526983|ref|YP_003669007.1| - 0.019 13.8 1.1 0.051 12.4 0.3 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2254) PAP2_3 PF14378.6 gi|297526983|ref|YP_003669007.1| - 0.025 14.3 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 PAP2 superfamily UPF0767 PF15990.5 gi|297526983|ref|YP_003669007.1| - 0.12 12.6 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 UPF0767 family DPM2 PF07297.12 gi|297526983|ref|YP_003669007.1| - 0.98 9.8 9.6 6 7.2 9.6 1.9 1 1 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) DUF3784 PF12650.7 gi|297526983|ref|YP_003669007.1| - 1.4 9.2 8.4 2.6 8.3 8.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF4719 PF15843.5 gi|297526983|ref|YP_003669007.1| - 5.7 7.0 5.2 1.8 8.6 1.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4719) POR_N PF01855.19 gi|297526985|ref|YP_003669009.1| - 2.7e-49 168.0 0.0 4.4e-49 167.3 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|297526985|ref|YP_003669009.1| - 1.5e-35 122.8 0.0 3.7e-35 121.6 0.0 1.6 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.20 gi|297526985|ref|YP_003669009.1| - 1.4e-07 31.5 0.0 3.7e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|297526985|ref|YP_003669009.1| - 8.6e-07 29.2 0.0 1.9e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|297526985|ref|YP_003669009.1| - 0.00052 19.7 0.7 0.00094 18.8 0.7 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain OxoGdeHyase_C PF16870.5 gi|297526985|ref|YP_003669009.1| - 0.019 14.7 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase C-terminal PFO_beta_C PF12367.8 gi|297526986|ref|YP_003669010.1| - 5.8e-30 103.2 0.5 1.1e-29 102.3 0.5 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal TPP_enzyme_C PF02775.21 gi|297526986|ref|YP_003669010.1| - 4.5e-28 98.0 0.2 6.8e-28 97.4 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YHYH PF14240.6 gi|297526986|ref|YP_003669010.1| - 0.064 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 YHYH protein PadR PF03551.14 gi|297526987|ref|YP_003669011.1| - 3.5e-10 39.7 0.7 6.1e-10 38.9 0.7 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|297526987|ref|YP_003669011.1| - 0.00018 22.1 0.2 0.00026 21.6 0.2 1.4 1 0 0 1 1 1 1 Replication terminator protein HTH_34 PF13601.6 gi|297526987|ref|YP_003669011.1| - 0.0029 17.7 0.0 0.0053 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain FUR PF01475.19 gi|297526987|ref|YP_003669011.1| - 0.003 17.7 0.2 0.07 13.3 0.0 2.2 2 0 0 2 2 2 1 Ferric uptake regulator family TrmB PF01978.19 gi|297526987|ref|YP_003669011.1| - 0.022 14.6 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|297526987|ref|YP_003669011.1| - 0.028 14.3 0.0 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 MarR family MatE PF01554.18 gi|297526988|ref|YP_003669012.1| - 8.3e-62 207.6 30.6 1.5e-34 119.0 10.4 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|297526988|ref|YP_003669012.1| - 3.9e-06 27.0 49.6 0.00024 21.2 17.9 3.9 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MacB_PCD PF12704.7 gi|297526989|ref|YP_003669013.1| - 7.4e-16 59.1 0.9 7.4e-16 59.1 0.9 2.8 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|297526989|ref|YP_003669013.1| - 5.5e-12 46.0 7.8 5.5e-12 46.0 7.8 3.4 3 1 0 3 3 3 1 FtsX-like permease family NapD PF03927.13 gi|297526989|ref|YP_003669013.1| - 0.095 12.8 0.0 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 NapD protein NPCBM_assoc PF10633.9 gi|297526990|ref|YP_003669014.1| - 4.6e-07 30.0 0.0 0.031 14.5 0.0 5.2 7 0 0 7 7 7 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Wzt_C PF14524.6 gi|297526990|ref|YP_003669014.1| - 2.7e-05 24.2 4.2 0.37 10.8 0.2 3.8 3 0 0 3 3 3 2 Wzt C-terminal domain DUF11 PF01345.18 gi|297526990|ref|YP_003669014.1| - 0.0015 18.8 7.6 6 7.3 0.1 6.2 6 0 0 6 6 6 2 Domain of unknown function DUF11 DUF4368 PF14287.6 gi|297526990|ref|YP_003669014.1| - 0.027 14.8 0.0 0.09 13.1 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4368) ABC_tran PF00005.27 gi|297526991|ref|YP_003669015.1| - 1.3e-33 116.4 0.0 1.8e-33 115.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297526991|ref|YP_003669015.1| - 1.5e-06 28.2 0.1 0.037 13.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297526991|ref|YP_003669015.1| - 3.5e-05 23.3 0.1 0.0019 17.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|297526991|ref|YP_003669015.1| - 5.7e-05 23.0 0.0 0.14 11.8 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|297526991|ref|YP_003669015.1| - 0.00077 19.2 0.1 0.0015 18.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|297526991|ref|YP_003669015.1| - 0.0016 18.7 0.0 0.0038 17.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|297526991|ref|YP_003669015.1| - 0.0031 17.9 0.0 0.0078 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|297526991|ref|YP_003669015.1| - 0.0048 16.8 0.2 0.014 15.3 0.1 1.8 1 1 0 1 1 1 1 RsgA GTPase G-alpha PF00503.20 gi|297526991|ref|YP_003669015.1| - 0.0075 15.5 0.0 0.011 15.0 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit AAA_23 PF13476.6 gi|297526991|ref|YP_003669015.1| - 0.0096 16.4 0.1 0.02 15.4 0.1 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|297526991|ref|YP_003669015.1| - 0.039 13.5 0.2 0.081 12.5 0.2 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|297526991|ref|YP_003669015.1| - 0.044 12.9 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA12 PF10443.9 gi|297526991|ref|YP_003669015.1| - 0.046 12.5 0.0 0.067 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein T4SS-DNA_transf PF02534.14 gi|297526991|ref|YP_003669015.1| - 0.053 12.3 0.1 0.073 11.9 0.1 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_24 PF13479.6 gi|297526991|ref|YP_003669015.1| - 0.054 13.2 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|297526991|ref|YP_003669015.1| - 0.059 12.6 0.3 0.16 11.1 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_18 PF13238.6 gi|297526991|ref|YP_003669015.1| - 0.071 13.7 0.7 0.41 11.2 0.5 2.2 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|297526991|ref|YP_003669015.1| - 0.075 12.6 0.0 0.31 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|297526991|ref|YP_003669015.1| - 0.094 12.6 1.9 4.2 7.3 0.1 2.5 2 1 1 3 3 3 0 NTPase ATPase_2 PF01637.18 gi|297526991|ref|YP_003669015.1| - 0.1 12.5 0.1 0.2 11.6 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Spermine_synth PF01564.17 gi|297526992|ref|YP_003669016.1| - 1.6e-53 181.0 0.0 2.1e-53 180.5 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|297526992|ref|YP_003669016.1| - 7.3e-11 41.8 0.0 2e-10 40.4 0.0 1.8 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|297526992|ref|YP_003669016.1| - 3.6e-05 24.4 0.0 5.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297526992|ref|YP_003669016.1| - 0.00024 21.7 0.0 0.00043 20.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|297526992|ref|YP_003669016.1| - 0.00048 19.4 0.6 0.052 12.8 0.1 2.2 1 1 1 2 2 2 2 Branched-chain polyamine synthase A C-terminal domain Methyltransf_12 PF08242.12 gi|297526992|ref|YP_003669016.1| - 0.0017 19.1 0.0 0.0062 17.3 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|297526992|ref|YP_003669016.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_30 PF05430.11 gi|297526992|ref|YP_003669016.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|297526992|ref|YP_003669016.1| - 0.036 13.6 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Lig_C PF18330.1 gi|297526993|ref|YP_003669017.1| - 3.7e-19 68.9 0.0 7e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|297526993|ref|YP_003669017.1| - 4.9e-17 62.7 0.1 1e-16 61.7 0.1 1.5 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|297526993|ref|YP_003669017.1| - 1.3e-05 25.0 0.8 0.0012 18.5 0.8 2.3 1 1 0 1 1 1 1 ATP dependent DNA ligase domain IF2_N PF04760.15 gi|297526995|ref|YP_003669019.1| - 0.11 12.3 4.0 0.12 12.2 1.4 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF72 PF01904.18 gi|297526996|ref|YP_003669020.1| - 5.2e-40 137.9 1.0 6.5e-40 137.6 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Methyltr_RsmB-F PF01189.17 gi|297526997|ref|YP_003669021.1| - 8.8e-43 146.3 0.0 1.2e-42 145.8 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|297526997|ref|YP_003669021.1| - 5e-09 36.5 0.0 8.1e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|297526997|ref|YP_003669021.1| - 0.0037 17.4 0.0 0.0052 16.9 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase UPF0113 PF03657.13 gi|297526998|ref|YP_003669022.1| - 9.9e-14 51.4 0.9 3.1e-13 49.8 0.3 2.0 2 0 0 2 2 2 1 UPF0113 PUA domain Na_H_Exchanger PF00999.21 gi|297526999|ref|YP_003669023.1| - 4.3e-54 183.8 51.8 5.1e-54 183.5 51.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CxxCxxCC PF03692.15 gi|297527000|ref|YP_003669024.1| - 7.5e-07 29.8 0.8 1.6e-06 28.7 0.8 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Biotin_lipoyl PF00364.22 gi|297527002|ref|YP_003669026.1| - 1.2e-17 63.5 5.1 1.2e-17 63.5 5.1 1.9 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|297527002|ref|YP_003669026.1| - 4.6e-13 48.8 1.2 3.2e-07 30.1 0.1 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|297527002|ref|YP_003669026.1| - 1.3e-08 35.5 0.3 0.0068 17.1 0.0 3.2 3 0 0 3 3 3 2 HlyD family secretion protein GCV_H PF01597.19 gi|297527002|ref|YP_003669026.1| - 3e-06 27.1 1.2 3e-06 27.1 1.2 2.0 2 1 0 2 2 2 1 Glycine cleavage H-protein HlyD_D23 PF16576.5 gi|297527002|ref|YP_003669026.1| - 7.4e-06 25.3 0.2 0.015 14.5 0.1 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|297527002|ref|YP_003669026.1| - 0.0017 18.3 2.1 0.0063 16.4 0.8 2.5 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.22 gi|297527002|ref|YP_003669026.1| - 0.0087 16.2 0.4 0.28 11.4 0.1 2.8 2 1 0 2 2 2 1 Peptidase family M23 Carboxyl_trans PF01039.22 gi|297527003|ref|YP_003669027.1| - 1.6e-186 620.8 0.1 1.8e-186 620.6 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|297527003|ref|YP_003669027.1| - 3.6e-06 26.7 0.1 6.9e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) Thiolase_N PF00108.23 gi|297527004|ref|YP_003669028.1| - 1.5e-20 73.6 0.0 7.6e-20 71.4 0.0 2.1 1 1 1 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|297527004|ref|YP_003669028.1| - 3.6e-11 42.8 0.0 7.6e-11 41.7 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|297527004|ref|YP_003669028.1| - 2.9e-07 30.3 0.3 7.6e-07 29.0 0.3 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|297527004|ref|YP_003669028.1| - 0.0001 22.3 0.1 0.0053 16.8 0.0 2.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|297527004|ref|YP_003669028.1| - 0.084 12.7 1.8 14 5.7 0.0 3.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Transglut_core PF01841.19 gi|297527006|ref|YP_003669030.1| - 4.9e-12 46.3 0.0 7.9e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily PqqD PF05402.12 gi|297527007|ref|YP_003669031.1| - 1.2e-08 35.1 0.1 1.6e-08 34.7 0.1 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) tRNA_anti-codon PF01336.25 gi|297527008|ref|YP_003669032.1| - 2.3e-08 33.9 0.2 6.4e-08 32.5 0.1 1.7 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|297527008|ref|YP_003669032.1| - 0.0001 22.2 0.1 0.00014 21.7 0.1 1.3 1 0 0 1 1 1 1 Replication protein A OB domain DUF123 PF01986.16 gi|297527010|ref|YP_003669034.1| - 4.1e-24 84.9 0.0 5.5e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 AAA_5 PF07728.14 gi|297527012|ref|YP_003669036.1| - 2.8e-28 98.7 0.0 3e-27 95.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|297527012|ref|YP_003669036.1| - 1.4e-07 31.2 0.1 3e-07 30.2 0.1 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_3 PF07726.11 gi|297527012|ref|YP_003669036.1| - 7.1e-06 25.9 0.0 1.4e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|297527012|ref|YP_003669036.1| - 3.9e-05 24.1 0.1 0.00037 20.9 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|297527012|ref|YP_003669036.1| - 4.6e-05 23.9 0.4 0.00011 22.6 0.0 2.0 2 2 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|297527012|ref|YP_003669036.1| - 0.00022 20.7 0.0 0.00056 19.3 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|297527012|ref|YP_003669036.1| - 0.0034 17.6 0.1 0.017 15.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain MCM PF00493.23 gi|297527012|ref|YP_003669036.1| - 0.0039 16.3 0.0 0.018 14.1 0.0 2.0 2 0 0 2 2 2 1 MCM P-loop domain RuvB_N PF05496.12 gi|297527012|ref|YP_003669036.1| - 0.056 13.2 3.0 0.15 11.8 0.2 2.7 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|297527012|ref|YP_003669036.1| - 0.059 13.1 0.0 0.45 10.2 0.0 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|297527012|ref|YP_003669036.1| - 0.087 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|297527012|ref|YP_003669036.1| - 0.1 12.3 0.8 0.65 9.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|297527012|ref|YP_003669036.1| - 0.12 12.2 0.8 11 5.9 0.0 2.9 3 0 0 3 3 3 0 NTPase VWA PF00092.28 gi|297527013|ref|YP_003669037.1| - 6.3e-08 33.1 0.7 1.1e-07 32.2 0.2 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|297527013|ref|YP_003669037.1| - 8.7e-08 31.8 0.0 1.4e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|297527013|ref|YP_003669037.1| - 3.1e-05 24.6 0.0 0.00019 22.0 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain Sm_multidrug_ex PF06695.11 gi|297527015|ref|YP_003669039.1| - 2e-31 109.2 4.5 3.1e-31 108.5 4.5 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein DHHA1 PF02272.19 gi|297527016|ref|YP_003669040.1| - 5.5e-05 23.6 0.4 0.00021 21.7 0.4 2.0 1 1 0 1 1 1 1 DHHA1 domain LexA_DNA_bind PF01726.16 gi|297527017|ref|YP_003669041.1| - 3.7e-09 36.2 0.0 6.3e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.7 gi|297527017|ref|YP_003669041.1| - 0.00011 22.2 0.0 0.00016 21.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|297527017|ref|YP_003669041.1| - 0.00019 21.2 0.0 0.00035 20.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|297527017|ref|YP_003669041.1| - 0.00043 20.2 0.0 0.00092 19.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|297527017|ref|YP_003669041.1| - 0.0024 17.7 0.1 0.0051 16.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|297527017|ref|YP_003669041.1| - 0.0033 17.3 0.0 0.0055 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|297527017|ref|YP_003669041.1| - 0.012 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_12 PF08461.10 gi|297527017|ref|YP_003669041.1| - 0.035 14.0 0.1 0.078 12.9 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Glyco_hydro_57 PF03065.15 gi|297527019|ref|YP_003669043.1| - 1.1e-32 113.5 14.7 1.3e-32 113.4 0.5 3.1 3 1 1 4 4 4 2 Glycosyl hydrolase family 57 FtsX PF02687.21 gi|297527021|ref|YP_003669045.1| - 8e-07 29.4 8.4 8e-07 29.4 8.4 3.0 2 1 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.27 gi|297527022|ref|YP_003669046.1| - 4.1e-32 111.5 0.0 6.3e-32 110.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|297527022|ref|YP_003669046.1| - 0.00025 20.6 0.2 0.18 11.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|297527022|ref|YP_003669046.1| - 0.00058 19.6 0.1 0.0013 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|297527022|ref|YP_003669046.1| - 0.00068 19.5 0.0 0.92 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|297527022|ref|YP_003669046.1| - 0.0021 17.8 0.0 0.009 15.8 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|297527022|ref|YP_003669046.1| - 0.0055 16.6 0.0 0.0091 15.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|297527022|ref|YP_003669046.1| - 0.0066 16.7 0.2 0.25 11.6 0.0 2.7 3 0 0 3 3 3 1 AAA domain T2SSE PF00437.20 gi|297527022|ref|YP_003669046.1| - 0.0097 15.0 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|297527022|ref|YP_003669046.1| - 0.02 15.4 0.1 0.038 14.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain Polyoma_lg_T_C PF06431.11 gi|297527022|ref|YP_003669046.1| - 0.033 13.1 0.0 0.045 12.6 0.0 1.1 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus AAA PF00004.29 gi|297527022|ref|YP_003669046.1| - 0.036 14.5 0.4 4.1 7.8 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|297527022|ref|YP_003669046.1| - 0.047 14.1 0.0 0.094 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|297527022|ref|YP_003669046.1| - 0.13 12.0 0.0 0.41 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|297527022|ref|YP_003669046.1| - 0.13 12.3 0.3 0.81 9.8 0.1 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|297527023|ref|YP_003669047.1| - 3.8e-34 118.1 0.0 6.4e-34 117.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|297527023|ref|YP_003669047.1| - 2.5e-05 23.9 0.1 0.0063 16.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|297527023|ref|YP_003669047.1| - 0.00058 19.8 0.2 0.77 9.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system dNK PF01712.19 gi|297527023|ref|YP_003669047.1| - 0.0048 16.8 0.1 0.028 14.3 0.0 1.9 2 0 0 2 2 2 1 Deoxynucleoside kinase RsgA_GTPase PF03193.16 gi|297527023|ref|YP_003669047.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|297527023|ref|YP_003669047.1| - 0.016 15.6 0.2 0.025 15.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|297527023|ref|YP_003669047.1| - 0.021 14.6 0.1 0.043 13.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|297527023|ref|YP_003669047.1| - 0.031 14.5 0.6 0.63 10.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|297527023|ref|YP_003669047.1| - 0.12 12.9 0.1 0.24 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|297527023|ref|YP_003669047.1| - 0.12 12.2 0.1 0.29 10.9 0.1 1.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA PF00004.29 gi|297527023|ref|YP_003669047.1| - 0.2 12.1 1.8 5.1 7.5 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Tim29 PF10171.9 gi|297527024|ref|YP_003669048.1| - 0.044 13.3 0.0 3.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Translocase of the Inner Mitochondrial membrane 29 Glyco_hydro_57 PF03065.15 gi|297527025|ref|YP_003669049.1| - 3.3e-23 82.4 13.6 1.8e-21 76.7 8.2 3.7 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 CARDB PF07705.11 gi|297527025|ref|YP_003669049.1| - 0.16 12.3 5.2 0.17 12.2 2.2 2.4 2 0 0 2 2 2 0 CARDB ASH PF15780.5 gi|297527025|ref|YP_003669049.1| - 0.24 11.7 1.9 0.29 11.4 0.5 1.8 2 0 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin BACON PF13004.7 gi|297527025|ref|YP_003669049.1| - 3.3 7.8 5.9 0.85 9.7 0.7 2.8 3 0 0 3 3 3 0 Putative binding domain, N-terminal OPT PF03169.15 gi|297527026|ref|YP_003669050.1| - 8.6e-10 37.9 48.1 7.4e-09 34.8 5.6 3.6 1 1 0 2 2 2 2 OPT oligopeptide transporter protein Peptidase_M28 PF04389.17 gi|297527028|ref|YP_003669052.1| - 1.1e-08 35.0 0.0 2.6e-08 33.8 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 FtsX PF02687.21 gi|297527028|ref|YP_003669052.1| - 9e-08 32.5 6.6 9e-08 32.5 6.6 4.7 3 1 1 4 4 4 1 FtsX-like permease family MacB_PCD PF12704.7 gi|297527028|ref|YP_003669052.1| - 1.2e-05 25.8 2.6 7e-05 23.3 1.2 2.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain YidC_periplas PF14849.6 gi|297527029|ref|YP_003669053.1| - 3.6e-08 33.6 1.2 0.00093 19.2 0.3 3.1 2 1 1 3 3 3 2 YidC periplasmic domain PqqD PF05402.12 gi|297527032|ref|YP_003669056.1| - 5e-11 42.7 0.0 7.1e-11 42.3 0.0 1.3 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4777 PF16007.5 gi|297527032|ref|YP_003669056.1| - 0.012 15.9 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) HTH_36 PF13730.6 gi|297527032|ref|YP_003669056.1| - 0.03 14.3 0.0 0.35 10.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3283 PF11686.8 gi|297527032|ref|YP_003669056.1| - 0.036 13.9 0.0 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3283) Glyco_transf_5 PF08323.11 gi|297527033|ref|YP_003669057.1| - 6.5e-32 111.2 0.2 1.8e-31 109.7 0.0 1.7 2 0 0 2 2 2 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|297527033|ref|YP_003669057.1| - 8e-26 90.6 0.1 1.7e-24 86.3 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297527033|ref|YP_003669057.1| - 2.2e-20 73.4 0.1 4.7e-20 72.4 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|297527033|ref|YP_003669057.1| - 2.8e-05 24.2 0.2 0.00042 20.4 0.1 2.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|297527033|ref|YP_003669057.1| - 0.02 15.3 0.0 0.34 11.3 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|297527033|ref|YP_003669057.1| - 0.089 12.8 0.2 0.53 10.3 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferase 4-like Glyco_hydro_57 PF03065.15 gi|297527034|ref|YP_003669058.1| - 2.8e-38 131.9 0.1 5.7e-38 130.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|297527034|ref|YP_003669058.1| - 1.7e-36 124.3 3.7 3.5e-36 123.3 3.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) DUF1926 PF09095.11 gi|297527034|ref|YP_003669058.1| - 5.2e-26 91.9 0.0 4.8e-13 49.4 0.3 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF1926) Glyco_hydro_38N PF01074.22 gi|297527034|ref|YP_003669058.1| - 3.5e-05 23.3 0.0 6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_1 PF00232.18 gi|297527036|ref|YP_003669060.1| - 8.8e-88 294.7 13.4 2.1e-86 290.1 13.4 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|297527036|ref|YP_003669060.1| - 5.6e-06 26.0 1.2 5.6e-06 26.0 1.2 1.8 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_cc PF11790.8 gi|297527036|ref|YP_003669060.1| - 0.017 14.7 1.6 0.037 13.6 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase catalytic core MFS_1 PF07690.16 gi|297527037|ref|YP_003669061.1| - 9.4e-52 176.1 33.6 4.2e-43 147.6 29.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|297527037|ref|YP_003669061.1| - 3.3e-12 46.0 8.4 3.3e-12 46.0 8.4 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|297527037|ref|YP_003669061.1| - 9.3e-05 21.4 10.6 9.3e-05 21.4 10.6 3.5 1 1 2 3 3 3 1 MFS_1 like family ATG22 PF11700.8 gi|297527037|ref|YP_003669061.1| - 0.11 11.2 21.5 0.021 13.5 1.7 4.2 2 1 2 4 4 4 0 Vacuole effluxer Atg22 like MFS_3 PF05977.13 gi|297527037|ref|YP_003669061.1| - 1.4 7.3 13.8 0.25 9.7 3.2 2.4 1 1 0 2 2 2 0 Transmembrane secretion effector Vma12 PF11712.8 gi|297527037|ref|YP_003669061.1| - 1.6 8.8 4.7 4.9 7.2 0.1 2.6 2 1 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase OATP PF03137.20 gi|297527037|ref|YP_003669061.1| - 2.6 6.2 22.0 0.33 9.2 1.9 3.8 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Glyco_hydro_57 PF03065.15 gi|297527038|ref|YP_003669062.1| - 1.6e-65 221.5 1.8 2.5e-65 220.8 1.8 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 ArdA PF07275.11 gi|297527039|ref|YP_003669063.1| - 0.076 13.6 0.6 0.54 10.8 0.1 2.3 2 1 0 2 2 2 0 Antirestriction protein (ArdA) HTH_45 PF14947.6 gi|297527040|ref|YP_003669064.1| - 2.5e-10 40.2 2.1 2.5e-10 40.2 2.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|297527040|ref|YP_003669064.1| - 1.2e-07 31.1 0.3 1e-06 28.2 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|297527040|ref|YP_003669064.1| - 3.3e-06 26.8 0.0 7.2e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|297527040|ref|YP_003669064.1| - 1.4e-05 24.9 0.3 2.3e-05 24.2 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.22 gi|297527040|ref|YP_003669064.1| - 1.4e-05 24.9 0.0 2.8e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|297527040|ref|YP_003669064.1| - 1.9e-05 24.4 0.1 4.5e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|297527040|ref|YP_003669064.1| - 3e-05 24.0 0.9 6.6e-05 22.9 0.9 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) FaeA PF04703.12 gi|297527040|ref|YP_003669064.1| - 8.8e-05 22.8 0.1 0.00018 21.8 0.1 1.5 1 0 0 1 1 1 1 FaeA-like protein HTH_12 PF08461.10 gi|297527040|ref|YP_003669064.1| - 0.00036 20.4 0.2 0.0008 19.3 0.2 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|297527040|ref|YP_003669064.1| - 0.00037 20.5 0.0 0.00069 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Mrr_N PF14338.6 gi|297527040|ref|YP_003669064.1| - 0.00039 20.5 0.2 0.0073 16.4 0.1 2.3 2 0 0 2 2 2 1 Mrr N-terminal domain HTH_11 PF08279.12 gi|297527040|ref|YP_003669064.1| - 0.0004 20.3 0.7 0.0017 18.3 0.1 2.3 2 0 0 2 2 2 1 HTH domain GntR PF00392.21 gi|297527040|ref|YP_003669064.1| - 0.00075 19.1 0.2 0.0021 17.6 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|297527040|ref|YP_003669064.1| - 0.00076 19.4 0.1 0.0016 18.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|297527040|ref|YP_003669064.1| - 0.001 18.8 0.1 0.0036 17.0 0.1 1.8 2 0 0 2 2 1 1 LexA DNA binding domain HTH_5 PF01022.20 gi|297527040|ref|YP_003669064.1| - 0.001 18.9 0.0 0.0023 17.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|297527040|ref|YP_003669064.1| - 0.0023 17.9 0.1 0.0045 16.9 0.1 1.5 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_23 PF13384.6 gi|297527040|ref|YP_003669064.1| - 0.0024 17.6 0.0 0.0054 16.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|297527040|ref|YP_003669064.1| - 0.0028 17.6 0.0 0.0064 16.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.20 gi|297527040|ref|YP_003669064.1| - 0.0033 17.7 0.1 0.0072 16.7 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|297527040|ref|YP_003669064.1| - 0.0038 17.1 0.0 0.0079 16.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_40 PF14493.6 gi|297527040|ref|YP_003669064.1| - 0.0038 17.6 0.5 0.058 13.9 0.2 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain DUF505 PF04458.12 gi|297527040|ref|YP_003669064.1| - 0.0055 15.1 0.0 0.0066 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Ribosomal_S19e PF01090.19 gi|297527040|ref|YP_003669064.1| - 0.0073 16.0 0.1 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_Crp_2 PF13545.6 gi|297527040|ref|YP_003669064.1| - 0.011 15.7 0.1 0.033 14.1 0.0 1.8 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain TnsD PF15978.5 gi|297527040|ref|YP_003669064.1| - 0.011 14.7 0.1 0.023 13.7 0.1 1.5 2 0 0 2 2 2 0 Tn7-like transposition protein D Fe_dep_repress PF01325.19 gi|297527040|ref|YP_003669064.1| - 0.013 15.7 0.1 0.039 14.1 0.0 1.8 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HxlR PF01638.17 gi|297527040|ref|YP_003669064.1| - 0.015 15.2 0.6 0.039 13.8 0.6 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|297527040|ref|YP_003669064.1| - 0.016 15.7 0.0 0.039 14.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|297527040|ref|YP_003669064.1| - 0.018 14.7 0.1 0.052 13.3 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|297527040|ref|YP_003669064.1| - 0.019 14.8 0.9 0.029 14.2 0.2 1.7 2 0 0 2 2 1 0 TFIIE alpha subunit ANAPC2 PF08672.11 gi|297527040|ref|YP_003669064.1| - 0.021 15.3 0.9 1.6 9.3 0.2 2.8 2 1 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 Methyltransf_4 PF02390.17 gi|297527040|ref|YP_003669064.1| - 0.044 13.2 0.1 3.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Putative methyltransferase DUF4932 PF16286.5 gi|297527040|ref|YP_003669064.1| - 0.05 12.9 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4932) DUF4364 PF14277.6 gi|297527040|ref|YP_003669064.1| - 0.065 13.0 1.0 0.62 9.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) Sigma70_r4_2 PF08281.12 gi|297527040|ref|YP_003669064.1| - 0.069 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Replic_Relax PF13814.6 gi|297527040|ref|YP_003669064.1| - 0.09 12.8 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation ABC2_membrane_3 PF12698.7 gi|297527041|ref|YP_003669065.1| - 1e-22 80.8 27.4 1.2e-22 80.6 27.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|297527041|ref|YP_003669065.1| - 6.8e-16 58.4 19.1 9.9e-16 57.9 19.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|297527042|ref|YP_003669066.1| - 1.8e-30 106.3 0.0 3e-30 105.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297527042|ref|YP_003669066.1| - 8.9e-14 52.0 0.5 4.6e-06 26.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297527042|ref|YP_003669066.1| - 7e-06 25.6 0.1 0.033 13.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|297527042|ref|YP_003669066.1| - 0.0018 18.8 0.8 0.0029 18.1 0.8 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|297527042|ref|YP_003669066.1| - 0.003 17.2 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|297527042|ref|YP_003669066.1| - 0.011 15.5 0.1 0.025 14.3 0.1 1.6 1 1 1 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|297527042|ref|YP_003669066.1| - 0.021 14.4 0.2 0.052 13.2 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|297527042|ref|YP_003669066.1| - 0.031 14.7 0.3 0.06 13.8 0.1 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|297527042|ref|YP_003669066.1| - 0.043 13.5 0.1 0.083 12.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.21 gi|297527042|ref|YP_003669066.1| - 0.048 13.7 0.1 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_13 PF13166.6 gi|297527042|ref|YP_003669066.1| - 0.064 11.9 0.1 1.1 7.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|297527042|ref|YP_003669066.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain ThiP_synth PF10120.9 gi|297527044|ref|YP_003669068.1| - 4.1e-45 153.4 0.0 5.6e-45 152.9 0.0 1.1 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|297527044|ref|YP_003669068.1| - 8.7e-05 22.2 0.0 0.00031 20.4 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|297527044|ref|YP_003669068.1| - 0.014 15.0 0.0 0.11 12.2 0.0 2.5 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_37 PF13744.6 gi|297527044|ref|YP_003669068.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|297527044|ref|YP_003669068.1| - 0.018 15.1 0.0 0.069 13.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_24 PF13412.6 gi|297527044|ref|YP_003669068.1| - 0.02 14.4 0.0 0.3 10.7 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|297527044|ref|YP_003669068.1| - 0.027 14.2 0.1 0.069 12.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|297527044|ref|YP_003669068.1| - 0.091 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_8 PF02954.19 gi|297527044|ref|YP_003669068.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Terminase_5 PF06056.12 gi|297527044|ref|YP_003669068.1| - 0.11 12.4 0.0 0.42 10.5 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|297527044|ref|YP_003669068.1| - 0.17 11.9 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix ApbA_C PF08546.11 gi|297527045|ref|YP_003669069.1| - 8.3e-26 90.6 0.1 1.6e-25 89.7 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|297527045|ref|YP_003669069.1| - 2.3e-21 76.0 0.0 4.7e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|297527045|ref|YP_003669069.1| - 0.0016 19.0 0.0 0.004 17.7 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pantoate_transf PF02548.15 gi|297527046|ref|YP_003669070.1| - 2.2e-109 364.8 0.4 2.5e-109 364.7 0.4 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|297527046|ref|YP_003669070.1| - 8.4e-08 32.0 2.8 5.7e-06 26.0 2.8 2.8 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ComA PF02679.15 gi|297527046|ref|YP_003669070.1| - 0.22 11.0 3.2 0.77 9.2 0.2 2.3 2 1 1 3 3 3 0 (2R)-phospho-3-sulfolactate synthase (ComA) GHMP_kinases_N PF00288.26 gi|297527047|ref|YP_003669071.1| - 0.023 14.9 0.1 0.04 14.2 0.1 1.4 1 0 0 1 1 1 0 GHMP kinases N terminal domain Gcw_chp PF09694.10 gi|297527047|ref|YP_003669071.1| - 0.097 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (Gcw_chp) PPS_PS PF02006.16 gi|297527048|ref|YP_003669072.1| - 4.4e-75 251.1 1.8 5.5e-75 250.8 1.8 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DFP PF04127.15 gi|297527049|ref|YP_003669073.1| - 2.6e-52 177.4 0.0 9.8e-52 175.5 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|297527049|ref|YP_003669073.1| - 4.2e-37 127.3 0.6 7.6e-37 126.5 0.1 1.6 2 0 0 2 2 2 1 Flavoprotein Acetyltransf_1 PF00583.25 gi|297527050|ref|YP_003669074.1| - 2.7e-19 69.5 0.2 3.7e-19 69.1 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|297527050|ref|YP_003669074.1| - 4.9e-15 55.7 0.3 8.1e-15 55.0 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|297527050|ref|YP_003669074.1| - 1.4e-12 47.7 0.1 2.7e-12 46.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|297527050|ref|YP_003669074.1| - 2.4e-11 43.4 0.0 3.8e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|297527050|ref|YP_003669074.1| - 2.2e-06 27.8 0.3 9.8e-06 25.7 0.1 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|297527050|ref|YP_003669074.1| - 4.6e-06 26.8 0.7 1.4e-05 25.2 0.7 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|297527050|ref|YP_003669074.1| - 9.6e-06 26.3 0.0 1.4e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|297527050|ref|YP_003669074.1| - 2.7e-05 23.9 0.0 4.6e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|297527050|ref|YP_003669074.1| - 5.4e-05 22.9 0.7 0.00015 21.4 0.7 1.7 1 1 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_15 PF17013.5 gi|297527050|ref|YP_003669074.1| - 0.0042 16.6 1.6 0.0066 15.9 1.6 1.4 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_13 PF13880.6 gi|297527050|ref|YP_003669074.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase tRNA-synt_2 PF00152.20 gi|297527051|ref|YP_003669075.1| - 2.2e-90 302.9 0.0 2.9e-90 302.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|297527051|ref|YP_003669075.1| - 1.3e-09 37.9 1.8 2.2e-09 37.2 1.8 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|297527051|ref|YP_003669075.1| - 0.0044 16.5 0.2 0.076 12.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) HhH-GPD PF00730.25 gi|297527052|ref|YP_003669076.1| - 4.8e-21 75.2 0.0 6.3e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|297527052|ref|YP_003669076.1| - 3.4e-05 24.1 7.9 5.5e-05 23.4 7.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|297527052|ref|YP_003669076.1| - 0.002 17.9 0.0 0.0061 16.4 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|297527052|ref|YP_003669076.1| - 0.0031 18.1 0.6 2 9.1 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain DUF1803 PF08820.10 gi|297527052|ref|YP_003669076.1| - 0.061 13.4 0.1 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) Phage_NinH PF06322.11 gi|297527052|ref|YP_003669076.1| - 0.08 12.8 0.2 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Phage NinH protein Oxidored_molyb PF00174.19 gi|297527053|ref|YP_003669077.1| - 8.7e-37 126.4 0.1 1.3e-36 125.9 0.1 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain MFS_1 PF07690.16 gi|297527054|ref|YP_003669078.1| - 4.9e-19 68.5 37.2 4.9e-19 68.5 37.2 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|297527054|ref|YP_003669078.1| - 1.2 7.9 22.6 48 2.6 22.6 2.4 1 1 0 1 1 1 0 MFS_1 like family Met_10 PF02475.16 gi|297527055|ref|YP_003669079.1| - 5.2e-58 196.1 0.0 7.4e-58 195.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|297527055|ref|YP_003669079.1| - 6.9e-07 28.8 0.0 9.3e-07 28.3 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|297527055|ref|YP_003669079.1| - 2.7e-05 23.7 0.0 3.6e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|297527055|ref|YP_003669079.1| - 4.8e-05 23.0 0.0 6.9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|297527055|ref|YP_003669079.1| - 7e-05 22.8 0.0 0.00012 22.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|297527055|ref|YP_003669079.1| - 0.0034 17.1 0.0 0.0049 16.6 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase MTS PF05175.14 gi|297527055|ref|YP_003669079.1| - 0.0034 16.9 0.0 0.0053 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain MethyltransfD12 PF02086.15 gi|297527055|ref|YP_003669079.1| - 0.032 13.9 0.0 0.059 13.0 0.0 1.5 1 1 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.6 gi|297527055|ref|YP_003669079.1| - 0.089 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297527055|ref|YP_003669079.1| - 0.2 12.4 0.0 0.35 11.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PhoH PF02562.16 gi|297527056|ref|YP_003669080.1| - 7.1e-48 162.8 0.0 1.2e-47 162.0 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|297527056|ref|YP_003669080.1| - 2.8e-07 30.3 1.0 1.9e-06 27.6 0.9 2.2 1 1 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|297527056|ref|YP_003669080.1| - 4.2e-05 23.3 0.1 0.0001 22.0 0.1 1.6 1 0 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|297527056|ref|YP_003669080.1| - 8.8e-05 22.5 0.0 0.0055 16.8 0.0 2.4 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|297527056|ref|YP_003669080.1| - 0.0088 15.9 0.2 0.035 14.0 0.2 2.1 2 0 0 2 2 2 1 KH domain AAA_30 PF13604.6 gi|297527056|ref|YP_003669080.1| - 0.15 11.8 0.0 0.45 10.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain FtsH_ext PF06480.15 gi|297527057|ref|YP_003669081.1| - 0.068 13.5 0.0 0.13 12.6 0.0 1.5 1 1 0 1 1 1 0 FtsH Extracellular DUF2007 PF09413.10 gi|297527057|ref|YP_003669081.1| - 0.086 13.0 1.6 12 6.2 0.3 2.4 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein PCNA_N PF00705.18 gi|297527058|ref|YP_003669082.1| - 3.2e-11 43.0 0.1 7.8e-11 41.8 0.0 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|297527058|ref|YP_003669082.1| - 7.9e-06 26.1 0.5 3.6e-05 23.9 0.0 2.3 3 1 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|297527058|ref|YP_003669082.1| - 0.017 14.6 0.0 0.073 12.5 0.0 1.8 1 1 0 2 2 2 0 Rad9 KH_5 PF13184.6 gi|297527058|ref|YP_003669082.1| - 0.025 14.7 0.1 0.069 13.3 0.1 1.8 1 0 0 1 1 1 0 NusA-like KH domain Rad1 PF02144.16 gi|297527058|ref|YP_003669082.1| - 0.092 11.8 0.2 28 3.7 0.1 2.9 2 1 1 3 3 3 0 Repair protein Rad1/Rec1/Rad17 HTH_11 PF08279.12 gi|297527059|ref|YP_003669083.1| - 4e-06 26.7 0.3 9.3e-06 25.5 0.3 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|297527059|ref|YP_003669083.1| - 5.3e-05 22.7 0.1 0.0001 21.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|297527059|ref|YP_003669083.1| - 0.00037 20.5 0.0 0.0023 18.0 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|297527059|ref|YP_003669083.1| - 0.00059 19.2 0.0 0.015 14.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 MerR_1 PF13411.6 gi|297527059|ref|YP_003669083.1| - 0.00079 19.5 0.0 4.3 7.5 0.0 3.2 3 0 0 3 3 3 2 MerR HTH family regulatory protein HTH_Mga PF08280.11 gi|297527059|ref|YP_003669083.1| - 0.00086 19.3 0.5 0.0019 18.2 0.5 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Mrr_cat PF04471.12 gi|297527059|ref|YP_003669083.1| - 0.0013 18.8 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease HTH_23 PF13384.6 gi|297527059|ref|YP_003669083.1| - 0.0014 18.4 0.0 0.1 12.4 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain Mga PF05043.13 gi|297527059|ref|YP_003669083.1| - 0.0029 18.1 0.6 0.016 15.8 0.1 2.2 2 0 0 2 2 2 1 Mga helix-turn-helix domain TrmB PF01978.19 gi|297527059|ref|YP_003669083.1| - 0.0053 16.6 0.2 0.0095 15.8 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|297527059|ref|YP_003669083.1| - 0.0079 16.0 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_8 PF02954.19 gi|297527059|ref|YP_003669083.1| - 0.0093 15.7 1.0 0.025 14.3 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_36 PF13730.6 gi|297527059|ref|YP_003669083.1| - 0.017 15.1 0.2 0.03 14.3 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4372 PF14294.6 gi|297527059|ref|YP_003669083.1| - 0.017 15.3 0.7 0.78 9.9 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4372) HTH_26 PF13443.6 gi|297527059|ref|YP_003669083.1| - 0.044 14.2 0.1 0.13 12.7 0.1 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 gi|297527059|ref|YP_003669083.1| - 0.053 13.7 0.2 0.27 11.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|297527059|ref|YP_003669083.1| - 0.14 12.2 0.4 0.76 9.8 0.2 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DnaB_bind PF10410.9 gi|297527059|ref|YP_003669083.1| - 0.16 12.2 0.3 18 5.6 0.0 2.9 3 0 0 3 3 3 0 DnaB-helicase binding domain of primase DS PF01916.17 gi|297527060|ref|YP_003669084.1| - 2.5e-98 328.9 0.0 2.9e-98 328.7 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Peptidase_S66 PF02016.15 gi|297527060|ref|YP_003669084.1| - 0.033 14.3 0.0 4.2 7.5 0.0 2.3 2 0 0 2 2 2 0 LD-carboxypeptidase N-terminal domain DUF1743 PF08489.11 gi|297527061|ref|YP_003669085.1| - 1.4e-33 115.4 0.0 2.6e-33 114.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|297527061|ref|YP_003669085.1| - 4.6e-07 29.7 0.2 9.6e-07 28.7 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|297527061|ref|YP_003669085.1| - 0.0013 18.7 1.7 0.0029 17.5 1.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|297527061|ref|YP_003669085.1| - 0.0018 18.2 0.5 0.003 17.6 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|297527061|ref|YP_003669085.1| - 0.003 17.2 4.6 0.0051 16.5 4.6 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain MCM_OB PF17207.3 gi|297527061|ref|YP_003669085.1| - 0.02 14.7 0.5 0.31 10.9 0.0 2.2 2 0 0 2 2 2 0 MCM OB domain zf-TFIIB PF13453.6 gi|297527061|ref|YP_003669085.1| - 0.065 12.6 2.4 0.14 11.6 2.4 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|297527061|ref|YP_003669085.1| - 0.089 12.5 3.2 7.9 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|297527061|ref|YP_003669085.1| - 0.21 11.6 0.1 0.47 10.5 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|297527061|ref|YP_003669085.1| - 0.28 11.2 5.9 1.6 8.8 6.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|297527061|ref|YP_003669085.1| - 0.31 10.7 1.8 6.9 6.4 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger NRDD PF13597.6 gi|297527061|ref|YP_003669085.1| - 0.36 9.6 0.5 0.73 8.5 0.5 1.4 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|297527061|ref|YP_003669085.1| - 0.5 9.9 4.8 8.8 5.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|297527061|ref|YP_003669085.1| - 0.93 10.1 4.8 2.8 8.5 4.8 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf_C2H2_10 PF18414.1 gi|297527061|ref|YP_003669085.1| - 2 8.1 3.9 1.8 8.2 0.7 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-HIT PF04438.16 gi|297527061|ref|YP_003669085.1| - 3.9 7.4 7.3 4 7.4 1.7 2.2 2 0 0 2 2 2 0 HIT zinc finger Zn_ribbon_SprT PF17283.2 gi|297527061|ref|YP_003669085.1| - 5.2 7.1 5.6 12 5.9 5.6 1.7 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|297527061|ref|YP_003669085.1| - 7.2 6.8 6.0 15 5.8 0.3 2.4 1 1 0 2 2 2 0 Zinc ribbon domain YdjM PF04307.14 gi|297527062|ref|YP_003669086.1| - 1.1e-12 47.6 11.9 1.5e-11 44.0 11.9 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Mig-14 PF07395.11 gi|297527062|ref|YP_003669086.1| - 0.15 11.4 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Mig-14 DAGK_prokar PF01219.19 gi|297527062|ref|YP_003669086.1| - 0.17 11.7 2.4 5.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic diacylglycerol kinase DUF1129 PF06570.11 gi|297527062|ref|YP_003669086.1| - 0.79 9.2 4.9 1.3 8.5 4.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Filament PF00038.21 gi|297527063|ref|YP_003669087.1| - 0.00069 19.3 0.3 0.0011 18.6 0.3 1.2 1 0 0 1 1 1 1 Intermediate filament protein FAM76 PF16046.5 gi|297527063|ref|YP_003669087.1| - 0.0066 15.8 0.4 0.0096 15.3 0.4 1.1 1 0 0 1 1 1 1 FAM76 protein DivIVA PF05103.13 gi|297527063|ref|YP_003669087.1| - 0.007 16.5 3.4 0.73 9.9 0.7 2.3 1 1 1 2 2 2 2 DivIVA protein Baculo_PEP_C PF04513.12 gi|297527063|ref|YP_003669087.1| - 0.012 15.6 5.5 0.012 15.6 5.5 2.2 3 0 0 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus TolA_bind_tri PF16331.5 gi|297527063|ref|YP_003669087.1| - 0.024 14.7 2.9 0.044 13.8 2.9 1.4 1 0 0 1 1 1 0 TolA binding protein trimerisation TMF_TATA_bd PF12325.8 gi|297527063|ref|YP_003669087.1| - 0.026 14.7 1.5 0.051 13.8 1.5 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF3450 PF11932.8 gi|297527063|ref|YP_003669087.1| - 0.036 13.4 1.2 0.058 12.7 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) BST2 PF16716.5 gi|297527063|ref|YP_003669087.1| - 0.04 14.5 3.1 0.081 13.5 3.1 1.4 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 APG6_N PF17675.1 gi|297527063|ref|YP_003669087.1| - 0.043 14.3 0.2 0.08 13.5 0.2 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region Cob_adeno_trans PF01923.18 gi|297527063|ref|YP_003669087.1| - 0.049 13.8 0.3 0.096 12.8 0.3 1.4 1 0 0 1 1 1 0 Cobalamin adenosyltransferase TPR_MLP1_2 PF07926.12 gi|297527063|ref|YP_003669087.1| - 0.063 13.3 1.8 0.11 12.5 1.8 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein FlxA PF14282.6 gi|297527063|ref|YP_003669087.1| - 0.063 13.3 7.7 0.12 12.4 7.7 1.3 1 0 0 1 1 1 0 FlxA-like protein Snapin_Pallidin PF14712.6 gi|297527063|ref|YP_003669087.1| - 0.12 12.8 3.4 0.31 11.5 3.4 1.6 1 0 0 1 1 1 0 Snapin/Pallidin PspA_IM30 PF04012.12 gi|297527063|ref|YP_003669087.1| - 0.13 11.9 0.4 0.19 11.3 0.4 1.1 1 0 0 1 1 1 0 PspA/IM30 family SlyX PF04102.12 gi|297527063|ref|YP_003669087.1| - 0.17 12.5 2.0 0.33 11.6 2.0 1.4 1 0 0 1 1 1 0 SlyX Uso1_p115_C PF04871.13 gi|297527063|ref|YP_003669087.1| - 0.19 12.1 2.3 0.3 11.4 2.3 1.2 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region CENP-F_leu_zip PF10473.9 gi|297527063|ref|YP_003669087.1| - 0.22 11.5 2.5 0.38 10.8 2.5 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seryl_tRNA_N PF02403.22 gi|297527063|ref|YP_003669087.1| - 0.25 11.6 3.1 0.64 10.3 3.1 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Annexin_like PF18411.1 gi|297527063|ref|YP_003669087.1| - 0.35 11.1 3.4 2.3 8.5 0.2 2.7 2 1 0 2 2 2 0 Annexin-like domain CENP-H PF05837.12 gi|297527063|ref|YP_003669087.1| - 0.36 11.3 1.9 0.65 10.4 1.9 1.3 1 0 0 1 1 1 0 Centromere protein H (CENP-H) TMF_DNA_bd PF12329.8 gi|297527063|ref|YP_003669087.1| - 0.39 10.7 7.5 0.93 9.5 7.5 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DHR10 PF18595.1 gi|297527063|ref|YP_003669087.1| - 0.43 10.7 2.4 0.71 9.9 2.4 1.3 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DivIC PF04977.15 gi|297527063|ref|YP_003669087.1| - 1.9 8.3 6.8 14 5.6 0.9 2.5 1 1 1 2 2 2 0 Septum formation initiator TetR_C_5 PF08360.11 gi|297527063|ref|YP_003669087.1| - 3.2 7.9 7.7 0.19 11.9 0.4 2.6 3 0 0 3 3 3 0 QacR-like protein, C-terminal region Csm1_N PF18504.1 gi|297527063|ref|YP_003669087.1| - 4.8 7.6 8.8 7.7 6.9 3.1 2.4 1 1 1 2 2 2 0 Csm1 N-terminal domain AAA_26 PF13500.6 gi|297527064|ref|YP_003669088.1| - 9e-05 22.4 0.0 0.00037 20.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain TSC22 PF01166.18 gi|297527064|ref|YP_003669088.1| - 0.097 13.0 1.3 0.17 12.2 1.3 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family IF-2B PF01008.17 gi|297527065|ref|YP_003669089.1| - 1.4e-54 185.3 0.0 1.7e-54 184.9 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1722 PF08349.11 gi|297527065|ref|YP_003669089.1| - 0.013 15.8 0.0 0.021 15.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) IF-2B PF01008.17 gi|297527066|ref|YP_003669090.1| - 1.5e-89 299.9 0.9 1.8e-89 299.7 0.9 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family FeS_assembly_P PF01883.19 gi|297527068|ref|YP_003669092.1| - 2e-16 59.9 0.2 2.6e-16 59.5 0.2 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein tRNA-synt_2b PF00587.25 gi|297527069|ref|YP_003669093.1| - 7.5e-35 120.5 0.0 1.3e-34 119.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|297527069|ref|YP_003669093.1| - 1.5e-19 70.2 7.2 2.5e-19 69.5 7.2 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Lge1 PF11488.8 gi|297527069|ref|YP_003669093.1| - 0.0048 17.1 1.2 0.013 15.7 1.2 1.7 1 0 0 1 1 1 1 Transcriptional regulatory protein LGE1 Nmad5 PF18757.1 gi|297527069|ref|YP_003669093.1| - 0.0099 16.1 0.7 0.02 15.1 0.7 1.4 1 0 0 1 1 1 1 Nucleotide modification associated domain 5 Thioredoxin_3 PF13192.6 gi|297527070|ref|YP_003669094.1| - 0.00054 19.9 0.0 0.001 19.1 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain PIN_5 PF08745.11 gi|297527070|ref|YP_003669094.1| - 0.13 11.6 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 PINc domain ribonuclease HNH_repeat PF18780.1 gi|297527070|ref|YP_003669094.1| - 0.31 10.9 0.1 0.31 10.9 0.1 1.7 2 0 0 2 2 2 0 Homing endonuclease repeat PfkB PF00294.24 gi|297527071|ref|YP_003669095.1| - 1.2e-06 28.1 0.0 1.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Lactamase_B_3 PF13483.6 gi|297527075|ref|YP_003669099.1| - 1.4e-41 142.1 0.2 1.7e-41 141.8 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|297527075|ref|YP_003669099.1| - 2e-10 40.6 1.7 4.3e-06 26.4 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain PmbA_TldD PF01523.16 gi|297527076|ref|YP_003669100.1| - 4.1e-56 190.9 0.1 6.1e-54 183.8 0.1 2.1 2 0 0 2 2 2 2 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|297527077|ref|YP_003669101.1| - 4.6e-57 194.0 0.1 6.4e-57 193.5 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Glyco_trans_2_3 PF13632.6 gi|297527078|ref|YP_003669102.1| - 5e-21 75.5 0.5 5e-21 75.5 0.5 2.2 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|297527078|ref|YP_003669102.1| - 3.3e-17 62.8 0.1 6.3e-17 61.9 0.1 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|297527078|ref|YP_003669102.1| - 1.2e-15 58.0 0.0 1.8e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|297527078|ref|YP_003669102.1| - 5.1e-08 32.6 0.1 7.5e-08 32.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 DEAD_assoc PF08494.11 gi|297527079|ref|YP_003669103.1| - 1.3e-56 191.4 0.0 2.4e-56 190.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|297527079|ref|YP_003669103.1| - 1e-27 97.0 0.0 8e-27 94.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|297527079|ref|YP_003669103.1| - 5.7e-17 62.1 0.6 2.2e-16 60.2 0.6 2.0 2 0 0 2 2 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|297527079|ref|YP_003669103.1| - 2.3e-12 47.2 0.0 7.5e-11 42.3 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|297527079|ref|YP_003669103.1| - 0.0039 17.6 4.7 0.68 10.4 1.4 3.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NOG1_N PF17835.1 gi|297527079|ref|YP_003669103.1| - 0.013 15.5 4.3 0.044 13.8 0.9 2.6 2 1 0 2 2 2 0 NOG1 N-terminal helical domain SNF2_N PF00176.23 gi|297527079|ref|YP_003669103.1| - 0.021 13.6 0.0 0.061 12.0 0.0 1.8 1 1 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|297527079|ref|YP_003669103.1| - 0.06 13.7 0.0 0.57 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Ploopntkinase1 PF18748.1 gi|297527079|ref|YP_003669103.1| - 0.12 11.8 0.0 0.32 10.5 0.0 1.6 1 1 0 1 1 1 0 P-loop Nucleotide Kinase1 DEAD_2 PF06733.15 gi|297527079|ref|YP_003669103.1| - 0.13 11.9 0.1 0.4 10.3 0.0 1.8 2 0 0 2 2 2 0 DEAD_2 DUF4287 PF14117.6 gi|297527079|ref|YP_003669103.1| - 0.14 12.3 0.0 1.4 9.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) DUF2192 PF09958.9 gi|297527080|ref|YP_003669104.1| - 2.6e-89 298.7 6.7 3e-89 298.5 6.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) HTH_3 PF01381.22 gi|297527084|ref|YP_003669108.1| - 2.1e-06 27.7 0.1 3.8e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.12 gi|297527084|ref|YP_003669108.1| - 2.5e-05 24.1 0.2 6.9e-05 22.7 0.2 1.8 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|297527084|ref|YP_003669108.1| - 0.00016 21.7 0.2 0.00029 20.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|297527084|ref|YP_003669108.1| - 0.00024 20.4 0.2 0.00049 19.5 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|297527084|ref|YP_003669108.1| - 0.00026 20.7 0.4 0.0006 19.5 0.4 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_50 PF18024.1 gi|297527084|ref|YP_003669108.1| - 0.00027 20.5 1.0 0.0014 18.1 0.1 2.6 2 2 1 3 3 3 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|297527084|ref|YP_003669108.1| - 0.0041 17.2 0.4 0.0097 16.0 0.3 1.8 1 1 0 2 2 2 1 Trp repressor protein HTH_AsnC-type PF13404.6 gi|297527084|ref|YP_003669108.1| - 0.0094 15.8 0.2 0.02 14.7 0.2 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain MerR PF00376.23 gi|297527084|ref|YP_003669108.1| - 0.011 15.5 0.2 0.011 15.5 0.2 2.5 3 0 0 3 3 2 0 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|297527084|ref|YP_003669108.1| - 0.012 15.3 0.9 0.032 13.9 0.1 2.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|297527084|ref|YP_003669108.1| - 0.012 15.1 0.0 0.035 13.7 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Linker_histone PF00538.19 gi|297527084|ref|YP_003669108.1| - 0.013 15.8 0.1 0.022 15.1 0.1 1.5 1 1 0 1 1 1 0 linker histone H1 and H5 family YdaS_antitoxin PF15943.5 gi|297527084|ref|YP_003669108.1| - 0.014 15.2 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DnaB_bind PF10410.9 gi|297527084|ref|YP_003669108.1| - 0.017 15.3 1.2 3.3 8.0 0.5 2.4 2 0 0 2 2 2 0 DnaB-helicase binding domain of primase Phage_CI_repr PF07022.13 gi|297527084|ref|YP_003669108.1| - 0.017 15.2 0.0 0.042 13.9 0.0 1.7 2 0 0 2 2 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_10 PF04967.12 gi|297527084|ref|YP_003669108.1| - 0.019 14.7 0.1 0.065 13.0 0.0 1.9 2 0 0 2 2 1 0 HTH DNA binding domain Sigma70_ner PF04546.13 gi|297527084|ref|YP_003669108.1| - 0.022 14.6 0.2 0.028 14.3 0.2 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region HTH_29 PF13551.6 gi|297527084|ref|YP_003669108.1| - 0.023 14.7 0.1 0.039 14.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.7 gi|297527084|ref|YP_003669108.1| - 0.024 14.8 0.0 0.056 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|297527084|ref|YP_003669108.1| - 0.025 14.2 0.6 0.22 11.2 0.0 2.4 3 0 0 3 3 2 0 Bacterial regulatory proteins, gntR family EutB PF06751.11 gi|297527084|ref|YP_003669108.1| - 0.029 13.2 0.1 0.03 13.2 0.1 1.0 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) UPF0122 PF04297.14 gi|297527084|ref|YP_003669108.1| - 0.042 14.1 0.6 0.054 13.7 0.6 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like LacI PF00356.21 gi|297527084|ref|YP_003669108.1| - 0.043 13.6 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_22 PF13309.6 gi|297527084|ref|YP_003669108.1| - 0.049 13.7 0.3 0.58 10.3 0.1 2.6 2 1 0 2 2 2 0 HTH domain HTH_31 PF13560.6 gi|297527084|ref|YP_003669108.1| - 0.051 13.9 0.2 0.098 13.0 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain Death PF00531.22 gi|297527084|ref|YP_003669108.1| - 0.053 13.7 0.0 0.091 12.9 0.0 1.4 1 0 0 1 1 1 0 Death domain CDPS PF16715.5 gi|297527084|ref|YP_003669108.1| - 0.062 13.0 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 Cyclodipeptide synthase HTH_6 PF01418.17 gi|297527084|ref|YP_003669108.1| - 0.074 13.0 0.2 0.46 10.5 0.0 2.3 2 1 1 3 3 3 0 Helix-turn-helix domain, rpiR family HTH_DeoR PF08220.12 gi|297527084|ref|YP_003669108.1| - 0.079 12.7 0.2 0.19 11.5 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Fmp27_SW PF10305.9 gi|297527084|ref|YP_003669108.1| - 0.094 13.4 0.0 0.13 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Aminotran_1_2 PF00155.21 gi|297527086|ref|YP_003669110.1| - 3.3e-40 138.4 0.0 4.2e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|297527086|ref|YP_003669110.1| - 3.6e-08 32.6 0.0 5.6e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.19 gi|297527086|ref|YP_003669110.1| - 1.8e-05 23.9 0.0 2.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|297527086|ref|YP_003669110.1| - 0.0087 15.4 0.0 0.019 14.3 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|297527086|ref|YP_003669110.1| - 0.039 13.3 0.0 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.21 gi|297527087|ref|YP_003669111.1| - 6.2e-07 30.0 0.0 1.8e-06 28.4 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|297527087|ref|YP_003669111.1| - 1.9e-05 24.7 0.0 3.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain HMG-CoA_red PF00368.18 gi|297527088|ref|YP_003669112.1| - 1.8e-08 33.8 0.9 8.2e-07 28.3 0.0 2.2 2 0 0 2 2 2 2 Hydroxymethylglutaryl-coenzyme A reductase DUF35_N PF12172.8 gi|297527089|ref|YP_003669113.1| - 8.9e-11 41.5 0.8 1.3e-10 40.9 0.8 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|297527089|ref|YP_003669113.1| - 4.6e-08 32.9 0.0 6.5e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DZR PF12773.7 gi|297527089|ref|YP_003669113.1| - 0.0083 16.1 0.3 0.012 15.6 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|297527089|ref|YP_003669113.1| - 0.012 15.3 4.3 0.021 14.5 4.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Methyltransf_13 PF08421.11 gi|297527089|ref|YP_003669113.1| - 0.027 14.7 0.1 11 6.3 0.0 2.4 2 0 0 2 2 2 0 Putative zinc binding domain zf-RanBP PF00641.18 gi|297527089|ref|YP_003669113.1| - 0.072 12.4 0.7 0.096 12.0 0.7 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others HypA PF01155.19 gi|297527089|ref|YP_003669113.1| - 0.16 12.0 0.3 0.31 11.1 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CCHC PF00098.23 gi|297527089|ref|YP_003669113.1| - 0.9 9.7 4.7 8.4 6.7 0.5 2.3 2 0 0 2 2 2 0 Zinc knuckle zf-BED PF02892.15 gi|297527089|ref|YP_003669113.1| - 1 9.4 4.2 16 5.6 0.5 2.3 2 0 0 2 2 2 0 BED zinc finger zf-ribbon_3 PF13248.6 gi|297527089|ref|YP_003669113.1| - 1 8.8 5.0 3.1 7.4 5.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain ACP_syn_III_C PF08541.10 gi|297527090|ref|YP_003669114.1| - 3.1e-11 43.3 0.0 1.9e-10 40.8 0.0 2.2 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|297527090|ref|YP_003669114.1| - 1.5e-05 24.5 0.0 3.5e-05 23.3 0.2 1.4 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|297527090|ref|YP_003669114.1| - 0.00041 20.1 1.3 0.00084 19.1 0.5 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|297527090|ref|YP_003669114.1| - 0.0014 18.3 0.1 0.048 13.3 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal FAE1_CUT1_RppA PF08392.12 gi|297527090|ref|YP_003669114.1| - 0.23 10.7 0.0 4.6 6.4 0.0 2.0 2 0 0 2 2 2 0 FAE1/Type III polyketide synthase-like protein BPD_transp_1 PF00528.22 gi|297527091|ref|YP_003669115.1| - 6.9e-25 87.9 16.3 6.9e-25 87.9 16.3 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|297527091|ref|YP_003669115.1| - 2.1e-05 24.4 2.1 9.4e-05 22.3 0.2 3.0 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF3989 PF13150.6 gi|297527091|ref|YP_003669115.1| - 0.07 12.9 0.1 10 6.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) DUF1002 PF06207.11 gi|297527091|ref|YP_003669115.1| - 0.22 11.0 0.6 0.38 10.3 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) BPD_transp_1 PF00528.22 gi|297527092|ref|YP_003669116.1| - 2.9e-35 121.7 18.3 2.9e-35 121.7 18.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|297527093|ref|YP_003669117.1| - 2.6e-12 46.4 3.3 1.1e-06 27.9 0.0 3.5 3 2 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Kelch_1 PF01344.25 gi|297527093|ref|YP_003669117.1| - 0.025 14.1 0.1 0.069 12.7 0.1 1.8 1 0 0 1 1 1 0 Kelch motif RIFIN PF02009.16 gi|297527093|ref|YP_003669117.1| - 0.037 13.9 5.4 0.056 13.3 5.4 1.2 1 0 0 1 1 1 0 Rifin Lipoprotein_11 PF03260.13 gi|297527093|ref|YP_003669117.1| - 0.04 13.3 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 Lepidopteran low molecular weight (30 kD) lipoprotein Stevor PF17410.2 gi|297527093|ref|YP_003669117.1| - 1 8.8 5.7 1.6 8.2 5.7 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Pex14_N PF04695.13 gi|297527093|ref|YP_003669117.1| - 8.7 7.0 13.5 18 6.0 13.5 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region ABC_tran PF00005.27 gi|297527096|ref|YP_003669120.1| - 1.8e-27 96.5 0.0 3.6e-27 95.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297527096|ref|YP_003669120.1| - 3.5e-19 69.1 0.1 7.1e-19 68.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|297527096|ref|YP_003669120.1| - 0.00093 19.1 0.1 0.055 13.3 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 gi|297527096|ref|YP_003669120.1| - 0.071 12.4 1.5 4.9 6.4 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_13 PF13166.6 gi|297527096|ref|YP_003669120.1| - 0.084 11.5 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|297527096|ref|YP_003669120.1| - 0.11 12.2 0.3 0.24 11.1 0.3 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|297527096|ref|YP_003669120.1| - 0.13 12.6 0.8 0.48 10.7 0.8 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|297527097|ref|YP_003669121.1| - 2e-30 106.1 0.0 3.1e-30 105.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|297527097|ref|YP_003669121.1| - 4.4e-21 75.2 0.1 7.7e-21 74.4 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|297527097|ref|YP_003669121.1| - 9e-08 31.8 0.7 1.1e-06 28.2 0.3 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|297527097|ref|YP_003669121.1| - 4.3e-06 26.8 0.4 1.1e-05 25.4 0.1 1.8 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|297527097|ref|YP_003669121.1| - 0.0013 19.0 0.7 1.7 8.9 0.1 2.3 2 0 0 2 2 2 2 AAA domain PRK PF00485.18 gi|297527097|ref|YP_003669121.1| - 0.016 15.0 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|297527097|ref|YP_003669121.1| - 0.018 14.2 0.8 4.4 6.4 0.1 2.7 2 1 1 3 3 3 0 NB-ARC domain Rad17 PF03215.15 gi|297527097|ref|YP_003669121.1| - 0.039 13.9 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain TniB PF05621.11 gi|297527097|ref|YP_003669121.1| - 0.053 12.9 1.4 0.28 10.6 0.8 2.2 2 1 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|297527097|ref|YP_003669121.1| - 0.082 12.7 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|297527097|ref|YP_003669121.1| - 0.09 13.2 0.7 2.1 8.8 0.7 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|297527097|ref|YP_003669121.1| - 0.1 13.0 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.25 gi|297527097|ref|YP_003669121.1| - 0.13 11.9 0.1 0.27 10.9 0.1 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|297527097|ref|YP_003669121.1| - 0.13 12.1 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|297527097|ref|YP_003669121.1| - 0.15 11.6 0.0 0.44 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|297527097|ref|YP_003669121.1| - 0.19 11.8 0.5 0.89 9.6 0.0 2.0 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|297527097|ref|YP_003669121.1| - 0.23 11.2 0.5 0.78 9.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain RrnaAD PF00398.20 gi|297527098|ref|YP_003669122.1| - 0.0016 17.6 0.0 0.0019 17.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|297527098|ref|YP_003669122.1| - 0.0018 18.9 0.0 0.0026 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|297527098|ref|YP_003669122.1| - 0.0056 16.0 0.0 0.0075 15.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|297527098|ref|YP_003669122.1| - 0.0093 15.6 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|297527098|ref|YP_003669122.1| - 0.01 16.4 0.0 0.017 15.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|297527098|ref|YP_003669122.1| - 0.024 14.2 0.0 0.074 12.6 0.0 1.7 2 0 0 2 2 2 0 Histone methylation protein DOT1 Met_10 PF02475.16 gi|297527098|ref|YP_003669122.1| - 0.063 13.0 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Radical_SAM PF04055.21 gi|297527099|ref|YP_003669123.1| - 3.1e-23 83.0 0.0 4.6e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|297527099|ref|YP_003669123.1| - 0.15 12.2 0.0 0.37 10.9 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|297527099|ref|YP_003669123.1| - 0.17 11.4 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 HMGL-like Metallophos PF00149.28 gi|297527100|ref|YP_003669124.1| - 8.6e-07 29.6 1.6 1.2e-05 25.9 0.1 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|297527100|ref|YP_003669124.1| - 4.2e-05 23.8 0.0 8.1e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF2067 PF09840.9 gi|297527100|ref|YP_003669124.1| - 0.019 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) HAD PF12710.7 gi|297527100|ref|YP_003669124.1| - 0.1 13.0 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase CBF_beta PF02312.17 gi|297527101|ref|YP_003669125.1| - 0.0062 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Core binding factor beta subunit Peptidase_M48 PF01435.18 gi|297527102|ref|YP_003669126.1| - 2e-42 145.2 0.0 3.4e-42 144.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Yip1 PF04893.17 gi|297527102|ref|YP_003669126.1| - 0.0026 17.5 18.2 0.066 12.9 11.7 2.2 2 0 0 2 2 2 2 Yip1 domain Peptidase_M56 PF05569.11 gi|297527102|ref|YP_003669126.1| - 0.29 10.3 3.2 0.17 11.0 1.0 1.9 2 1 0 2 2 2 0 BlaR1 peptidase M56 Tetraspanin PF00335.20 gi|297527102|ref|YP_003669126.1| - 0.92 9.2 13.0 1.9 8.2 0.1 2.2 2 0 0 2 2 2 0 Tetraspanin family DUF2443 PF10398.9 gi|297527103|ref|YP_003669127.1| - 0.026 14.6 0.1 0.044 13.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2443) Cys_Met_Meta_PP PF01053.20 gi|297527103|ref|YP_003669127.1| - 0.15 10.5 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme TBP PF00352.21 gi|297527104|ref|YP_003669128.1| - 6.8e-59 195.8 0.2 1.6e-28 98.5 0.1 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|297527104|ref|YP_003669128.1| - 2e-06 27.8 0.0 0.047 13.8 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) RTT107_BRCT_5 PF16770.5 gi|297527104|ref|YP_003669128.1| - 0.01 15.7 0.3 0.061 13.2 0.1 2.1 2 0 0 2 2 2 0 Regulator of Ty1 transposition protein 107 BRCT domain Spore_YhaL PF14147.6 gi|297527104|ref|YP_003669128.1| - 0.064 13.0 0.2 0.66 9.7 0.1 2.3 2 0 0 2 2 2 0 Sporulation protein YhaL DUF2070 PF09843.9 gi|297527105|ref|YP_003669129.1| - 1.1e-98 330.9 6.8 1.3e-98 330.8 6.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Smr PF01713.21 gi|297527105|ref|YP_003669129.1| - 0.16 12.3 0.0 6.6 7.2 0.0 2.4 2 0 0 2 2 2 0 Smr domain MitoNEET_N PF10660.9 gi|297527106|ref|YP_003669130.1| - 3.8 7.6 10.4 2.7 8.1 0.4 2.9 3 0 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus DNA_ligase_A_M PF01068.21 gi|297527107|ref|YP_003669131.1| - 2.4e-64 216.8 0.2 3.9e-64 216.1 0.2 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|297527107|ref|YP_003669131.1| - 1.9e-40 139.0 0.2 3e-40 138.4 0.2 1.3 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|297527107|ref|YP_003669131.1| - 1.6e-24 86.3 0.0 4.4e-24 85.0 0.0 1.8 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|297527107|ref|YP_003669131.1| - 0.024 14.7 1.0 0.82 9.7 0.0 3.0 3 0 0 3 3 3 0 DNA ligase OB-like domain Lon_C PF05362.13 gi|297527108|ref|YP_003669132.1| - 0.0017 17.9 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Birna_VP4 PF01768.16 gi|297527108|ref|YP_003669132.1| - 0.019 14.8 0.0 0.053 13.3 0.0 1.7 2 0 0 2 2 2 0 Birnavirus VP4 protein UDG PF03167.19 gi|297527109|ref|YP_003669133.1| - 3.6e-48 163.5 0.0 4.8e-48 163.1 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GtrA PF04138.14 gi|297527110|ref|YP_003669134.1| - 5.6e-20 71.7 12.4 1.1e-19 70.8 12.4 1.5 1 0 0 1 1 1 1 GtrA-like protein DUF5622 PF18533.1 gi|297527111|ref|YP_003669135.1| - 3.5e-29 100.8 8.2 3.9e-29 100.6 8.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) DUF1902 PF08972.11 gi|297527112|ref|YP_003669136.1| - 0.16 11.9 0.0 2.7 8.0 0.0 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF1902) Hydrolase_6 PF13344.6 gi|297527113|ref|YP_003669137.1| - 3.5e-23 81.6 0.0 6.9e-23 80.7 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|297527113|ref|YP_003669137.1| - 1.5e-18 66.6 0.0 3e-18 65.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|297527113|ref|YP_003669137.1| - 5.8e-07 30.0 0.0 1.1e-06 29.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|297527113|ref|YP_003669137.1| - 8.3e-07 29.3 0.0 4.4e-05 23.6 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|297527113|ref|YP_003669137.1| - 0.052 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|297527113|ref|YP_003669137.1| - 0.078 12.6 0.2 0.18 11.4 0.1 1.6 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase Acid_phosphat_B PF03767.14 gi|297527113|ref|YP_003669137.1| - 0.088 12.4 0.1 0.19 11.3 0.1 1.5 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Asp_Glu_race PF01177.22 gi|297527113|ref|YP_003669137.1| - 0.19 11.5 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase Metallophos PF00149.28 gi|297527114|ref|YP_003669138.1| - 4.7e-17 63.2 0.8 7.4e-17 62.5 0.8 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|297527114|ref|YP_003669138.1| - 1e-14 55.1 0.3 2.1e-14 54.1 0.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|297527114|ref|YP_003669138.1| - 2.4e-12 46.7 2.4 6.8e-10 38.7 2.4 2.1 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily NAD_synthase PF02540.17 gi|297527115|ref|YP_003669139.1| - 1.3e-75 253.6 0.0 1.6e-75 253.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|297527115|ref|YP_003669139.1| - 3.3e-07 29.4 0.0 0.00013 20.9 0.0 2.5 2 0 0 2 2 2 2 tRNA methyl transferase PAPS_reduct PF01507.19 gi|297527115|ref|YP_003669139.1| - 0.0011 19.0 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|297527115|ref|YP_003669139.1| - 0.0042 16.6 0.0 0.011 15.3 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|297527115|ref|YP_003669139.1| - 0.0066 16.2 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 1 Asparagine synthase CH PF00307.31 gi|297527115|ref|YP_003669139.1| - 0.031 14.4 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 Calponin homology (CH) domain ATP_bind_3 PF01171.20 gi|297527115|ref|YP_003669139.1| - 0.1 12.3 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 PP-loop family AMMECR1 PF01871.17 gi|297527116|ref|YP_003669140.1| - 1.4e-45 154.9 0.0 1.6e-45 154.7 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 Mut7-C PF01927.16 gi|297527117|ref|YP_003669141.1| - 4.8e-49 166.2 0.0 5.5e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|297527117|ref|YP_003669141.1| - 6.6e-06 25.8 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_9 PF18477.1 gi|297527117|ref|YP_003669141.1| - 0.0091 16.3 0.0 0.015 15.6 0.0 1.4 1 0 0 1 1 1 1 PIN like domain DUF4428 PF14471.6 gi|297527117|ref|YP_003669141.1| - 0.021 14.7 2.4 0.78 9.7 2.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Zn_ribbon_SprT PF17283.2 gi|297527117|ref|YP_003669141.1| - 0.021 14.7 1.3 1.4 8.9 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Prok-RING_1 PF14446.6 gi|297527117|ref|YP_003669141.1| - 0.071 13.0 0.5 0.3 11.1 0.5 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Lar_restr_allev PF14354.6 gi|297527117|ref|YP_003669141.1| - 0.1 13.0 0.1 0.15 12.4 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-RRN7 PF11781.8 gi|297527117|ref|YP_003669141.1| - 0.38 10.5 3.6 3.8 7.3 0.7 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rad50_zn_hook PF04423.14 gi|297527117|ref|YP_003669141.1| - 2.4 8.0 4.9 1.2 9.1 0.3 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif CBS PF00571.28 gi|297527118|ref|YP_003669142.1| - 1.3e-29 102.4 15.2 1.1e-08 35.4 0.1 4.3 4 0 0 4 4 4 4 CBS domain Acetyltransf_10 PF13673.7 gi|297527118|ref|YP_003669142.1| - 0.017 15.0 0.0 0.43 10.5 0.0 2.5 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain CBS PF00571.28 gi|297527119|ref|YP_003669143.1| - 4.2e-45 152.0 15.4 3.1e-12 46.8 1.6 4.2 4 0 0 4 4 4 4 CBS domain HSL_N PF06350.12 gi|297527119|ref|YP_003669143.1| - 0.081 11.9 0.1 1.8 7.4 0.0 2.1 2 0 0 2 2 2 0 Hormone-sensitive lipase (HSL) N-terminus CBS PF00571.28 gi|297527120|ref|YP_003669144.1| - 7.7e-28 96.7 3.2 5.8e-13 49.1 1.1 2.2 2 0 0 2 2 2 2 CBS domain GTP_cyclohydro2 PF00925.20 gi|297527120|ref|YP_003669144.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase II LSM PF01423.22 gi|297527121|ref|YP_003669145.1| - 4.4e-21 74.4 0.2 5.1e-21 74.1 0.2 1.1 1 0 0 1 1 1 1 LSM domain LSM14 PF12701.7 gi|297527121|ref|YP_003669145.1| - 0.00016 21.7 0.3 0.00022 21.2 0.3 1.2 1 0 0 1 1 1 1 Scd6-like Sm domain SM-ATX PF14438.6 gi|297527121|ref|YP_003669145.1| - 0.0016 18.5 0.1 0.0021 18.2 0.1 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain BRCA-2_OB3 PF09104.10 gi|297527121|ref|YP_003669145.1| - 0.13 11.9 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 BRCA2, oligonucleotide/oligosaccharide-binding, domain 3 Methyltransf_25 PF13649.6 gi|297527122|ref|YP_003669146.1| - 1.3e-13 51.5 0.0 1.8e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297527122|ref|YP_003669146.1| - 1e-12 48.5 0.0 1.4e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|297527122|ref|YP_003669146.1| - 6.4e-12 45.6 0.0 7.8e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|297527122|ref|YP_003669146.1| - 1.5e-09 38.5 0.0 3e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|297527122|ref|YP_003669146.1| - 1.5e-08 34.3 0.0 1.9e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|297527122|ref|YP_003669146.1| - 1.5e-08 34.5 0.0 2.3e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|297527122|ref|YP_003669146.1| - 0.0025 17.2 0.0 0.0029 17.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|297527122|ref|YP_003669146.1| - 0.014 15.0 0.0 0.021 14.4 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|297527122|ref|YP_003669146.1| - 0.027 13.4 0.0 0.032 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) MetW PF07021.12 gi|297527122|ref|YP_003669146.1| - 0.032 13.8 0.1 0.057 13.0 0.1 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|297527122|ref|YP_003669146.1| - 0.035 13.9 0.0 0.049 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|297527122|ref|YP_003669146.1| - 0.04 13.3 0.3 0.05 13.0 0.3 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB AbiTii PF18864.1 gi|297527122|ref|YP_003669146.1| - 0.05 13.8 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 AbiTii Methyltransf_18 PF12847.7 gi|297527122|ref|YP_003669146.1| - 0.091 12.7 0.0 0.55 10.1 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain FtsJ PF01728.19 gi|297527122|ref|YP_003669146.1| - 0.13 12.4 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase SSPI PF14098.6 gi|297527122|ref|YP_003669146.1| - 0.15 12.3 0.2 0.32 11.2 0.2 1.6 1 0 0 1 1 1 0 Small, acid-soluble spore protein I Methyltransf_32 PF13679.6 gi|297527122|ref|YP_003669146.1| - 0.18 11.8 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|297527122|ref|YP_003669146.1| - 0.24 10.8 0.5 0.57 9.5 0.5 1.8 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NucS PF01939.16 gi|297527123|ref|YP_003669147.1| - 5.5e-51 173.1 0.2 7.1e-51 172.8 0.2 1.1 1 0 0 1 1 1 1 Endonuclease NucS RNA_Me_trans PF04252.13 gi|297527125|ref|YP_003669149.1| - 8.5e-47 159.3 0.0 1e-46 159.0 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Ist1 PF03398.14 gi|297527125|ref|YP_003669149.1| - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Regulator of Vps4 activity in the MVB pathway DUF5379 PF17350.2 gi|297527126|ref|YP_003669150.1| - 0.014 15.6 7.5 0.018 15.3 7.5 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5379) FbpA PF05833.11 gi|297527127|ref|YP_003669151.1| - 3.5e-44 151.3 14.7 3.5e-44 151.3 14.7 1.3 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|297527127|ref|YP_003669151.1| - 6.1e-28 97.6 0.0 1.4e-27 96.5 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|297527127|ref|YP_003669151.1| - 6.3e-05 23.1 0.0 0.00017 21.7 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain DUF16 PF01519.16 gi|297527127|ref|YP_003669151.1| - 5.9 7.4 10.5 1.6 9.3 3.6 3.0 3 0 0 3 3 3 0 Protein of unknown function DUF16 AdoMet_Synthase PF01941.19 gi|297527128|ref|YP_003669152.1| - 1.7e-175 583.6 2.6 1.9e-175 583.4 2.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF460 PF04312.13 gi|297527129|ref|YP_003669153.1| - 2.9e-49 166.4 1.1 3.2e-47 159.8 0.0 3.0 3 0 0 3 3 3 1 Protein of unknown function (DUF460) LRRFIP PF09738.9 gi|297527129|ref|YP_003669153.1| - 0.0019 17.7 22.2 0.041 13.3 9.2 2.5 1 1 1 2 2 2 2 LRRFIP family IMS_C PF11799.8 gi|297527129|ref|YP_003669153.1| - 0.14 12.9 0.9 0.34 11.6 0.9 1.7 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain Atg14 PF10186.9 gi|297527129|ref|YP_003669153.1| - 0.69 8.9 16.4 1.5 7.8 16.4 1.6 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FAM76 PF16046.5 gi|297527129|ref|YP_003669153.1| - 0.84 8.9 13.4 1.5 8.1 13.4 1.3 1 0 0 1 1 1 0 FAM76 protein TMF_DNA_bd PF12329.8 gi|297527129|ref|YP_003669153.1| - 2.1 8.4 28.4 0.27 11.3 7.7 4.0 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF1465 PF07323.12 gi|297527129|ref|YP_003669153.1| - 3.3 7.5 7.0 1.2 8.9 2.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) Fucose_iso_N2 PF07882.12 gi|297527129|ref|YP_003669153.1| - 4.5 6.8 7.3 3.9 7.0 1.4 2.6 2 0 0 2 2 2 0 L-fucose isomerase, second N-terminal domain RIO1 PF01163.22 gi|297527130|ref|YP_003669154.1| - 1.3e-43 148.8 0.0 1.8e-43 148.3 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|297527130|ref|YP_003669154.1| - 4.3e-22 78.1 0.8 7.5e-22 77.3 0.8 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|297527130|ref|YP_003669154.1| - 8.5e-07 29.1 0.1 3.6e-06 27.1 0.1 1.9 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|297527130|ref|YP_003669154.1| - 0.016 14.0 0.0 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Pkinase PF00069.25 gi|297527130|ref|YP_003669154.1| - 0.03 13.7 0.0 1.8 7.8 0.0 2.2 2 0 0 2 2 2 0 Protein kinase domain Kdo PF06293.14 gi|297527130|ref|YP_003669154.1| - 0.042 13.2 0.1 0.5 9.7 0.1 2.2 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.20 gi|297527130|ref|YP_003669154.1| - 0.049 13.2 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 Choline/ethanolamine kinase HTH_5 PF01022.20 gi|297527131|ref|YP_003669155.1| - 2e-12 46.8 1.0 3.2e-12 46.1 1.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|297527131|ref|YP_003669155.1| - 3.4e-12 45.7 0.5 5.4e-12 45.1 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|297527131|ref|YP_003669155.1| - 7.1e-09 35.6 0.0 1.1e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|297527131|ref|YP_003669155.1| - 5.4e-08 32.6 0.0 7.8e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|297527131|ref|YP_003669155.1| - 9.2e-08 31.9 0.1 1.5e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|297527131|ref|YP_003669155.1| - 1.3e-05 25.1 1.1 5.3e-05 23.1 0.5 2.1 1 1 1 2 2 2 1 HTH domain HTH_34 PF13601.6 gi|297527131|ref|YP_003669155.1| - 6.5e-05 23.0 0.1 0.0001 22.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|297527131|ref|YP_003669155.1| - 8.4e-05 22.8 0.1 0.00012 22.3 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|297527131|ref|YP_003669155.1| - 0.00052 19.8 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|297527131|ref|YP_003669155.1| - 0.00091 19.1 0.1 0.0014 18.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|297527131|ref|YP_003669155.1| - 0.0012 18.7 0.2 0.0021 18.0 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|297527131|ref|YP_003669155.1| - 0.0044 17.5 0.0 0.0072 16.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|297527131|ref|YP_003669155.1| - 0.0055 16.8 0.3 0.0097 16.0 0.3 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Sec1 PF00995.23 gi|297527131|ref|YP_003669155.1| - 0.0097 15.2 0.8 0.01 15.1 0.8 1.0 1 0 0 1 1 1 1 Sec1 family HTH_Crp_2 PF13545.6 gi|297527131|ref|YP_003669155.1| - 0.011 15.7 1.4 0.041 13.8 0.2 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2513 PF10711.9 gi|297527131|ref|YP_003669155.1| - 0.014 15.6 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) RPA_C PF08784.11 gi|297527131|ref|YP_003669155.1| - 0.017 15.8 0.0 0.024 15.3 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_23 PF13384.6 gi|297527131|ref|YP_003669155.1| - 0.021 14.6 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.6 gi|297527131|ref|YP_003669155.1| - 0.021 15.3 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|297527131|ref|YP_003669155.1| - 0.026 14.6 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.22 gi|297527131|ref|YP_003669155.1| - 0.06 13.4 0.1 0.24 11.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix Fe_dep_repress PF01325.19 gi|297527131|ref|YP_003669155.1| - 0.062 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_X PF05155.15 gi|297527131|ref|YP_003669155.1| - 0.1 13.1 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 Phage X family Sigma70_r4_2 PF08281.12 gi|297527131|ref|YP_003669155.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_43 PF09904.9 gi|297527131|ref|YP_003669155.1| - 0.13 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix MerR PF00376.23 gi|297527131|ref|YP_003669155.1| - 0.14 12.0 0.2 0.52 10.1 0.1 1.9 2 0 0 2 2 2 0 MerR family regulatory protein Proton_antipo_N PF00662.20 gi|297527132|ref|YP_003669156.1| - 0.036 14.2 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Col_cuticle_N PF01484.17 gi|297527132|ref|YP_003669156.1| - 0.17 11.9 1.3 0.34 11.0 1.3 1.4 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain Pyridoxal_deC PF00282.19 gi|297527134|ref|YP_003669158.1| - 3.8e-28 98.3 0.0 2.2e-27 95.8 0.0 2.0 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_1_2 PF00155.21 gi|297527134|ref|YP_003669158.1| - 5.7e-11 42.2 0.2 4.4e-10 39.3 0.0 2.3 2 1 0 3 3 3 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|297527134|ref|YP_003669158.1| - 2.6e-10 39.8 0.0 8.1e-10 38.2 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|297527134|ref|YP_003669158.1| - 1.4e-05 24.5 0.0 2.9e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|297527134|ref|YP_003669158.1| - 0.013 14.3 0.1 0.039 12.7 0.1 1.7 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain SepSecS PF05889.13 gi|297527134|ref|YP_003669158.1| - 0.014 14.1 0.0 0.018 13.8 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS TIP49 PF06068.13 gi|297527135|ref|YP_003669159.1| - 6.4e-143 476.2 0.3 8.7e-143 475.8 0.3 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|297527135|ref|YP_003669159.1| - 1.4e-25 89.2 1.6 7.2e-25 86.9 1.1 2.4 3 0 0 3 3 3 1 TIP49 AAA-lid domain AAA PF00004.29 gi|297527135|ref|YP_003669159.1| - 2.6e-12 47.3 0.4 4.8e-09 36.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|297527135|ref|YP_003669159.1| - 1.5e-08 34.6 0.2 8e-06 25.7 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|297527135|ref|YP_003669159.1| - 8.7e-08 32.5 0.0 0.0046 17.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|297527135|ref|YP_003669159.1| - 6.7e-06 26.6 0.3 6e-05 23.5 0.3 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_lid_2 PF17863.1 gi|297527135|ref|YP_003669159.1| - 4.8e-05 23.1 0.2 0.00073 19.3 0.1 2.5 2 0 0 2 2 2 1 AAA lid domain AAA_7 PF12775.7 gi|297527135|ref|YP_003669159.1| - 0.0002 21.0 0.0 0.0056 16.2 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|297527135|ref|YP_003669159.1| - 0.00026 21.0 0.1 0.0011 19.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|297527135|ref|YP_003669159.1| - 0.0004 20.0 0.1 0.00073 19.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|297527135|ref|YP_003669159.1| - 0.0006 20.4 0.0 0.0023 18.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|297527135|ref|YP_003669159.1| - 0.00068 19.9 0.1 0.0025 18.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.6 gi|297527135|ref|YP_003669159.1| - 0.00079 19.8 2.0 0.017 15.4 2.0 2.3 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|297527135|ref|YP_003669159.1| - 0.0014 18.1 0.3 0.0043 16.5 0.1 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|297527135|ref|YP_003669159.1| - 0.0015 18.3 0.0 0.0033 17.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TFIID-31kDa PF02291.15 gi|297527135|ref|YP_003669159.1| - 0.0095 16.0 0.1 0.47 10.5 0.0 2.4 2 1 0 2 2 2 1 Transcription initiation factor IID, 31kD subunit AAA_17 PF13207.6 gi|297527135|ref|YP_003669159.1| - 0.018 15.4 0.1 0.42 11.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|297527135|ref|YP_003669159.1| - 0.02 14.2 0.0 0.04 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|297527135|ref|YP_003669159.1| - 0.021 14.5 0.0 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DnaB_C PF03796.15 gi|297527135|ref|YP_003669159.1| - 0.035 13.4 0.1 0.095 12.0 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_33 PF13671.6 gi|297527135|ref|YP_003669159.1| - 0.044 13.9 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|297527135|ref|YP_003669159.1| - 0.047 14.1 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.16 gi|297527135|ref|YP_003669159.1| - 0.05 13.1 0.1 0.13 11.7 0.1 1.7 1 0 0 1 1 1 0 PhoH-like protein Zeta_toxin PF06414.12 gi|297527135|ref|YP_003669159.1| - 0.05 12.9 0.0 0.099 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.6 gi|297527135|ref|YP_003669159.1| - 0.068 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|297527135|ref|YP_003669159.1| - 0.077 13.5 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.15 gi|297527135|ref|YP_003669159.1| - 0.082 12.9 0.1 0.52 10.3 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|297527135|ref|YP_003669159.1| - 0.092 12.5 0.2 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|297527135|ref|YP_003669159.1| - 0.14 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Reticulon PF02453.17 gi|297527136|ref|YP_003669160.1| - 0.0091 16.0 2.2 0.0091 16.0 2.2 2.2 1 1 1 2 2 2 1 Reticulon Phage_holin_6_1 PF09682.10 gi|297527136|ref|YP_003669160.1| - 0.017 15.5 0.8 0.017 15.5 0.8 2.8 3 0 0 3 3 3 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Cytochrom_B562 PF07361.11 gi|297527136|ref|YP_003669160.1| - 0.019 15.6 1.0 0.11 13.2 0.1 2.2 2 1 0 2 2 2 0 Cytochrome b562 Sterile PF03015.19 gi|297527136|ref|YP_003669160.1| - 0.04 14.1 1.6 0.11 12.7 0.1 2.5 3 0 0 3 3 3 0 Male sterility protein IF-2B PF01008.17 gi|297527136|ref|YP_003669160.1| - 0.054 12.7 4.6 0.071 12.3 0.7 2.1 2 0 0 2 2 2 0 Initiation factor 2 subunit family Speriolin_C PF15059.6 gi|297527136|ref|YP_003669160.1| - 0.083 13.0 6.2 0.94 9.6 1.1 2.3 2 0 0 2 2 2 0 Speriolin C-terminus DOG1 PF14144.6 gi|297527136|ref|YP_003669160.1| - 0.14 12.4 0.2 6.7 7.0 0.0 2.6 2 0 0 2 2 2 0 Seed dormancy control RTX_C PF08339.10 gi|297527136|ref|YP_003669160.1| - 0.44 10.6 5.6 12 5.9 0.1 3.1 2 1 1 3 3 3 0 RTX C-terminal domain Wzy_C PF04932.15 gi|297527136|ref|YP_003669160.1| - 1.3 8.7 8.1 2.4 7.8 7.9 1.5 1 1 0 1 1 1 0 O-Antigen ligase YtxH PF12732.7 gi|297527136|ref|YP_003669160.1| - 1.9 9.1 4.3 7.6 7.2 0.6 2.8 2 0 0 2 2 2 0 YtxH-like protein Fib_alpha PF08702.10 gi|297527136|ref|YP_003669160.1| - 3.8 7.7 13.6 2.8 8.1 6.3 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF4364 PF14277.6 gi|297527137|ref|YP_003669161.1| - 0.042 13.6 1.2 0.068 12.9 1.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2153 PF09921.9 gi|297527138|ref|YP_003669162.1| - 1.4e-52 176.7 4.9 1.6e-52 176.5 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) AbiJ_NTD4 PF18863.1 gi|297527138|ref|YP_003669162.1| - 0.0089 16.5 1.9 0.43 11.0 0.4 2.1 1 1 1 2 2 2 2 AbiJ N-terminal domain 4 Mvb12 PF09452.10 gi|297527138|ref|YP_003669162.1| - 0.11 12.9 0.8 17 5.9 0.0 2.6 2 1 1 3 3 3 0 ESCRT-I subunit Mvb12 ApoB100_C PF12491.8 gi|297527138|ref|YP_003669162.1| - 0.28 11.2 3.3 0.97 9.4 0.3 2.2 2 0 0 2 2 2 0 Apolipoprotein B100 C terminal Trm112p PF03966.16 gi|297527139|ref|YP_003669163.1| - 7.5e-14 52.1 1.8 1.1e-13 51.5 1.8 1.2 1 0 0 1 1 1 1 Trm112p-like protein Mannosyl_trans3 PF11051.8 gi|297527139|ref|YP_003669163.1| - 0.05 13.0 0.0 0.062 12.7 0.0 1.1 1 0 0 1 1 1 0 Mannosyltransferase putative NOB1_Zn_bind PF08772.11 gi|297527139|ref|YP_003669163.1| - 0.069 13.3 1.3 1.9 8.7 0.1 2.3 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Thioredoxin_4 PF13462.6 gi|297527139|ref|YP_003669163.1| - 0.084 13.0 0.8 0.73 10.0 0.1 2.1 2 0 0 2 2 2 0 Thioredoxin zinc-ribbons_6 PF07191.12 gi|297527139|ref|YP_003669163.1| - 0.094 12.7 3.7 0.49 10.4 2.2 2.1 2 0 0 2 2 2 0 zinc-ribbons Copper-fist PF00649.18 gi|297527139|ref|YP_003669163.1| - 0.11 12.1 0.1 0.11 12.1 0.1 1.8 3 0 0 3 3 2 0 Copper fist DNA binding domain Zn_Tnp_IS1595 PF12760.7 gi|297527139|ref|YP_003669163.1| - 0.13 12.3 7.8 9.4 6.3 4.6 3.1 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF2724 PF10893.8 gi|297527139|ref|YP_003669163.1| - 0.15 11.9 0.4 0.23 11.3 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) Anti-TRAP PF15777.5 gi|297527139|ref|YP_003669163.1| - 0.22 11.5 0.2 0.22 11.5 0.2 2.5 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-RING_7 PF02591.15 gi|297527139|ref|YP_003669163.1| - 0.23 11.7 5.7 20 5.5 0.1 3.3 3 1 0 3 3 3 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|297527139|ref|YP_003669163.1| - 0.39 10.2 0.3 0.39 10.2 0.3 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zf-RRPl_C4 PF17026.5 gi|297527139|ref|YP_003669163.1| - 0.55 10.4 4.8 0.19 11.9 0.4 2.2 1 1 1 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type zinc_ribbon_4 PF13717.6 gi|297527139|ref|YP_003669163.1| - 0.64 10.0 5.9 6.6 6.8 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-UDP PF14569.6 gi|297527139|ref|YP_003669163.1| - 1.5 9.0 7.9 0.55 10.4 2.5 2.6 1 1 1 2 2 2 0 Zinc-binding RING-finger PHD PF00628.29 gi|297527139|ref|YP_003669163.1| - 3.9 7.4 8.1 7.9 6.5 2.3 3.0 2 1 1 3 3 3 0 PHD-finger Cys_rich_KTR PF14205.6 gi|297527139|ref|YP_003669163.1| - 6.3 6.7 14.1 2.4 8.0 5.2 3.0 2 2 1 3 3 3 0 Cysteine-rich KTR zf-C2H2_4 PF13894.6 gi|297527139|ref|YP_003669163.1| - 6.4 7.9 8.1 14 6.9 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger PGM_PMM_I PF02878.16 gi|297527140|ref|YP_003669164.1| - 7.4e-44 148.8 0.0 1.4e-43 147.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|297527140|ref|YP_003669164.1| - 1.1e-25 90.3 0.1 4e-25 88.4 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|297527140|ref|YP_003669164.1| - 4.5e-23 81.6 0.0 1.1e-22 80.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|297527140|ref|YP_003669164.1| - 3.4e-12 46.4 0.0 1e-11 44.8 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain YqbF PF14553.6 gi|297527142|ref|YP_003669166.1| - 0.13 12.1 0.2 0.24 11.3 0.2 1.4 1 0 0 1 1 1 0 YqbF, hypothetical protein domain AP_endonuc_2 PF01261.24 gi|297527143|ref|YP_003669167.1| - 1.2e-09 37.9 0.0 2.6e-09 36.8 0.0 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel RNase_HII PF01351.18 gi|297527144|ref|YP_003669168.1| - 8.9e-39 133.4 0.0 1e-38 133.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII ABC_sub_bind PF04392.12 gi|297527144|ref|YP_003669168.1| - 0.075 12.3 1.5 0.1 11.8 1.5 1.1 1 0 0 1 1 1 0 ABC transporter substrate binding protein MMR_HSR1_Xtn PF16897.5 gi|297527145|ref|YP_003669169.1| - 2.6e-19 69.2 0.3 4.3e-19 68.5 0.3 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|297527145|ref|YP_003669169.1| - 3.5e-19 68.6 0.1 7.6e-19 67.5 0.1 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|297527145|ref|YP_003669169.1| - 1.7e-14 53.9 0.0 4.6e-14 52.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|297527145|ref|YP_003669169.1| - 8.3e-10 38.4 0.2 9.7e-09 34.9 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|297527145|ref|YP_003669169.1| - 0.00014 21.5 0.5 0.52 9.8 0.1 3.3 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|297527145|ref|YP_003669169.1| - 0.00016 21.7 0.1 0.042 13.8 0.0 2.6 2 0 0 2 2 2 1 RsgA GTPase YchF-GTPase_C PF06071.13 gi|297527145|ref|YP_003669169.1| - 0.0021 18.2 0.6 0.18 12.0 0.0 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF933) Arf PF00025.21 gi|297527145|ref|YP_003669169.1| - 0.0028 17.1 0.1 0.016 14.6 0.0 2.3 3 1 0 3 3 3 1 ADP-ribosylation factor family cobW PF02492.19 gi|297527145|ref|YP_003669169.1| - 0.021 14.4 0.6 1.7 8.2 0.0 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Kinase-PPPase PF03618.14 gi|297527145|ref|YP_003669169.1| - 0.026 14.3 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Kinase/pyrophosphorylase KTI12 PF08433.10 gi|297527145|ref|YP_003669169.1| - 0.03 13.8 0.1 0.079 12.4 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MeaB PF03308.16 gi|297527145|ref|YP_003669169.1| - 0.034 13.1 0.2 0.58 9.1 0.1 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|297527145|ref|YP_003669169.1| - 0.059 13.5 0.2 0.24 11.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|297527145|ref|YP_003669169.1| - 0.077 13.0 0.1 0.34 11.0 0.1 2.1 1 1 1 2 2 2 0 Dynamin family SRPRB PF09439.10 gi|297527145|ref|YP_003669169.1| - 0.097 12.1 0.0 0.26 10.7 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.6 gi|297527145|ref|YP_003669169.1| - 0.16 12.6 0.6 0.3 11.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.9 gi|297527145|ref|YP_003669169.1| - 0.16 11.7 0.6 6.6 6.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation HSP20 PF00011.21 gi|297527146|ref|YP_003669170.1| - 4.3e-06 26.8 0.0 7.1e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family UTP15_C PF09384.10 gi|297527146|ref|YP_003669170.1| - 0.07 12.8 0.1 0.16 11.6 0.0 1.6 2 0 0 2 2 2 0 UTP15 C terminal SL4P PF17618.2 gi|297527146|ref|YP_003669170.1| - 0.1 12.6 0.8 0.22 11.6 0.8 1.6 1 0 0 1 1 1 0 Uncharacterized Strongylid L4 protein PAC2 PF09754.9 gi|297527147|ref|YP_003669171.1| - 2.4e-40 138.8 0.1 2.8e-40 138.6 0.1 1.0 1 0 0 1 1 1 1 PAC2 family AAA PF00004.29 gi|297527148|ref|YP_003669172.1| - 5.5e-35 120.7 0.0 1e-34 119.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.18 gi|297527148|ref|YP_003669172.1| - 1.2e-14 54.1 1.8 3.2e-14 52.7 1.8 1.8 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_lid_3 PF17862.1 gi|297527148|ref|YP_003669172.1| - 1.6e-06 27.8 0.0 3.8e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|297527148|ref|YP_003669172.1| - 1.7e-05 25.0 0.0 3e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TPR_1 PF00515.28 gi|297527148|ref|YP_003669172.1| - 6.9e-05 22.5 1.4 0.00026 20.6 1.4 2.1 1 0 0 1 1 1 1 Tetratricopeptide repeat Vps4_C PF09336.10 gi|297527148|ref|YP_003669172.1| - 9.5e-05 22.3 0.1 0.00073 19.5 0.0 2.3 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain RuvB_N PF05496.12 gi|297527148|ref|YP_003669172.1| - 0.00011 22.0 0.0 0.00028 20.7 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|297527148|ref|YP_003669172.1| - 0.00024 21.5 0.0 0.051 13.9 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|297527148|ref|YP_003669172.1| - 0.00037 20.5 0.0 0.0011 18.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|297527148|ref|YP_003669172.1| - 0.00041 20.7 0.0 0.0029 18.0 0.0 2.3 2 0 0 2 2 2 1 RNA helicase TPR_8 PF13181.6 gi|297527148|ref|YP_003669172.1| - 0.00078 19.5 1.2 0.00078 19.5 1.2 2.7 2 1 1 3 3 2 1 Tetratricopeptide repeat TIP49 PF06068.13 gi|297527148|ref|YP_003669172.1| - 0.0012 18.1 0.0 0.0021 17.3 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_22 PF13401.6 gi|297527148|ref|YP_003669172.1| - 0.0016 18.7 0.0 0.028 14.7 0.0 2.6 1 1 0 1 1 1 1 AAA domain TPR_7 PF13176.6 gi|297527148|ref|YP_003669172.1| - 0.0045 16.9 0.1 0.013 15.4 0.1 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|297527148|ref|YP_003669172.1| - 0.0056 16.7 1.3 0.0056 16.7 1.3 2.6 2 1 1 3 3 2 1 Tetratricopeptide repeat AAA_7 PF12775.7 gi|297527148|ref|YP_003669172.1| - 0.0076 15.8 0.0 0.027 14.0 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|297527148|ref|YP_003669172.1| - 0.0078 16.0 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|297527148|ref|YP_003669172.1| - 0.0083 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|297527148|ref|YP_003669172.1| - 0.011 16.2 0.0 0.034 14.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain TPR_11 PF13414.6 gi|297527148|ref|YP_003669172.1| - 0.022 14.4 0.2 0.054 13.2 0.2 1.6 1 0 0 1 1 1 0 TPR repeat Mg_chelatase PF01078.21 gi|297527148|ref|YP_003669172.1| - 0.023 14.1 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.25 gi|297527148|ref|YP_003669172.1| - 0.029 14.0 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.15 gi|297527148|ref|YP_003669172.1| - 0.03 14.2 0.0 0.09 12.7 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|297527148|ref|YP_003669172.1| - 0.037 13.6 0.1 0.13 11.9 0.0 1.6 1 1 0 2 2 2 0 AAA domain TPR_12 PF13424.6 gi|297527148|ref|YP_003669172.1| - 0.058 13.7 0.2 0.49 10.7 0.1 2.5 3 0 0 3 3 2 0 Tetratricopeptide repeat DUF5113 PF17140.4 gi|297527148|ref|YP_003669172.1| - 0.087 12.6 0.3 0.18 11.6 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) Viral_helicase1 PF01443.18 gi|297527148|ref|YP_003669172.1| - 0.089 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase T2SSE PF00437.20 gi|297527148|ref|YP_003669172.1| - 0.091 11.8 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|297527148|ref|YP_003669172.1| - 0.095 12.0 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.6 gi|297527148|ref|YP_003669172.1| - 0.096 13.1 0.0 0.29 11.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|297527148|ref|YP_003669172.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|297527148|ref|YP_003669172.1| - 0.19 11.9 0.0 0.34 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|297527148|ref|YP_003669172.1| - 0.2 11.8 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain TPR_6 PF13174.6 gi|297527148|ref|YP_003669172.1| - 0.33 11.7 2.3 6.2 7.7 1.1 3.1 2 1 0 2 2 2 0 Tetratricopeptide repeat Snf7 PF03357.21 gi|297527149|ref|YP_003669173.1| - 0.00019 21.1 0.2 0.00026 20.6 0.2 1.2 1 0 0 1 1 1 1 Snf7 TrmB PF01978.19 gi|297527149|ref|YP_003669173.1| - 0.0097 15.8 0.0 0.03 14.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Prefoldin_2 PF01920.20 gi|297527149|ref|YP_003669173.1| - 0.021 14.8 0.4 3.1 7.8 0.0 2.5 2 0 0 2 2 2 0 Prefoldin subunit DASH_Duo1 PF08651.10 gi|297527149|ref|YP_003669173.1| - 0.024 14.4 0.3 0.73 9.6 0.1 2.8 2 1 1 3 3 3 0 DASH complex subunit Duo1 MarR_2 PF12802.7 gi|297527149|ref|YP_003669173.1| - 0.049 13.5 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 MarR family Prefoldin PF02996.17 gi|297527149|ref|YP_003669173.1| - 0.051 13.5 1.9 0.2 11.5 0.2 2.2 2 0 0 2 2 2 0 Prefoldin subunit GntR PF00392.21 gi|297527149|ref|YP_003669173.1| - 0.096 12.3 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family T6PP_N PF18572.1 gi|297527149|ref|YP_003669173.1| - 0.17 11.8 1.2 0.27 11.1 0.2 1.8 1 1 1 2 2 2 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain CdvA PF18822.1 gi|297527150|ref|YP_003669174.1| - 4.4e-37 126.6 13.3 8.4e-37 125.7 13.3 1.4 1 0 0 1 1 1 1 CdvA-like coiled-coil domain Fmp27_WPPW PF10359.9 gi|297527150|ref|YP_003669174.1| - 0.00018 20.5 6.7 0.00018 20.5 6.7 1.4 1 1 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain PRC PF05239.16 gi|297527150|ref|YP_003669174.1| - 0.0009 19.3 0.8 0.0018 18.3 0.2 1.8 2 0 0 2 2 2 1 PRC-barrel domain ISG65-75 PF11727.8 gi|297527150|ref|YP_003669174.1| - 0.001 18.3 13.4 0.023 13.9 5.7 2.0 1 1 1 2 2 2 2 Invariant surface glycoprotein FH2 PF02181.23 gi|297527150|ref|YP_003669174.1| - 0.0066 15.6 4.4 0.0066 15.6 4.4 1.8 1 1 0 2 2 2 1 Formin Homology 2 Domain DUF2992 PF11208.8 gi|297527150|ref|YP_003669174.1| - 0.0074 16.5 0.7 0.0074 16.5 0.7 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2992) V_ATPase_I PF01496.19 gi|297527150|ref|YP_003669174.1| - 0.21 9.5 3.2 0.26 9.2 3.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Nsp1_C PF05064.13 gi|297527150|ref|YP_003669174.1| - 1 9.2 9.5 0.26 11.1 1.4 2.8 3 0 0 3 3 3 0 Nsp1-like C-terminal region DNA_primase_lrg PF04104.14 gi|297527150|ref|YP_003669174.1| - 1.3 8.4 5.7 2.6 7.4 5.6 1.7 1 1 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit Fib_alpha PF08702.10 gi|297527150|ref|YP_003669174.1| - 3.8 7.7 8.2 8.4 6.6 2.7 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family LMBR1 PF04791.16 gi|297527150|ref|YP_003669174.1| - 5 5.9 6.3 6.3 5.6 6.3 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Uso1_p115_C PF04871.13 gi|297527150|ref|YP_003669174.1| - 9.1 6.7 19.6 0.42 11.0 11.0 2.1 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Enolase_C PF00113.22 gi|297527152|ref|YP_003669176.1| - 3.8e-119 397.3 0.0 5.1e-119 396.9 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|297527152|ref|YP_003669176.1| - 6.3e-54 181.7 1.1 1.1e-53 180.9 0.5 1.7 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|297527152|ref|YP_003669176.1| - 2.9e-10 40.1 0.0 4.7e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like protein_MS5 PF04776.12 gi|297527152|ref|YP_003669176.1| - 0.09 12.9 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein MS5 Zn_Tnp_IS1595 PF12760.7 gi|297527154|ref|YP_003669178.1| - 0.00077 19.4 0.8 0.0032 17.4 0.7 1.9 1 1 0 1 1 1 1 Transposase zinc-ribbon domain HypA PF01155.19 gi|297527154|ref|YP_003669178.1| - 0.0016 18.4 1.0 0.26 11.3 0.0 2.5 2 1 1 3 3 3 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|297527154|ref|YP_003669178.1| - 0.0047 16.7 1.5 1.1 9.1 0.5 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|297527154|ref|YP_003669178.1| - 0.02 15.0 0.6 0.51 10.5 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|297527154|ref|YP_003669178.1| - 0.021 14.9 1.7 1.6 8.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|297527154|ref|YP_003669178.1| - 0.036 13.8 0.7 0.61 9.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.6 gi|297527154|ref|YP_003669178.1| - 0.036 14.4 0.1 0.059 13.8 0.1 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|297527154|ref|YP_003669178.1| - 0.049 13.1 1.0 0.32 10.5 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|297527154|ref|YP_003669178.1| - 0.074 12.8 0.6 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|297527154|ref|YP_003669178.1| - 0.088 12.8 0.2 1.5 8.8 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|297527154|ref|YP_003669178.1| - 0.098 12.6 3.1 2.7 8.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|297527154|ref|YP_003669178.1| - 0.12 12.1 2.4 3 7.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Trm112p PF03966.16 gi|297527154|ref|YP_003669178.1| - 0.15 12.6 0.7 2.4 8.8 0.6 2.2 1 1 1 2 2 2 0 Trm112p-like protein Ribosomal_L37e PF01907.19 gi|297527154|ref|YP_003669178.1| - 0.16 12.2 2.1 9.3 6.5 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L37e DUF35_N PF12172.8 gi|297527154|ref|YP_003669178.1| - 0.2 11.6 3.6 0.78 9.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-FPG_IleRS PF06827.14 gi|297527154|ref|YP_003669178.1| - 0.63 10.0 0.2 0.63 10.0 0.2 2.9 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Peptidase_S24 PF00717.23 gi|297527155|ref|YP_003669179.1| - 2.8e-07 30.4 0.2 5.2e-07 29.5 0.2 1.5 1 0 0 1 1 1 1 Peptidase S24-like Topoisom_bac PF01131.20 gi|297527156|ref|YP_003669180.1| - 1.3e-110 370.3 0.0 2e-110 369.6 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|297527156|ref|YP_003669180.1| - 6.2e-13 48.9 0.2 2.8e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Peptidase_M50 PF02163.22 gi|297527157|ref|YP_003669181.1| - 1.1e-10 41.2 10.7 2.4e-07 30.3 0.7 2.6 1 1 1 2 2 2 2 Peptidase family M50 RNA_pol_Rpb6 PF01192.22 gi|297527158|ref|YP_003669182.1| - 4.6e-12 45.7 0.0 7.8e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.24 gi|297527159|ref|YP_003669183.1| - 2.3e-182 607.0 15.6 2.6e-182 606.8 15.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family GSH-S_ATP PF02955.16 gi|297527159|ref|YP_003669183.1| - 0.027 13.9 0.3 0.44 9.9 0.1 2.6 2 0 0 2 2 2 0 Prokaryotic glutathione synthetase, ATP-grasp domain AAA_5 PF07728.14 gi|297527159|ref|YP_003669183.1| - 0.076 13.0 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MetW PF07021.12 gi|297527160|ref|YP_003669184.1| - 0.1 12.2 0.1 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Thioredoxin PF00085.20 gi|297527161|ref|YP_003669185.1| - 5.1e-07 29.6 0.0 5.8e-07 29.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_6 PF13848.6 gi|297527161|ref|YP_003669185.1| - 0.02 14.8 0.1 0.025 14.5 0.1 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain DUF4248 PF14053.6 gi|297527163|ref|YP_003669187.1| - 0.045 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4248) RAMP4 PF06624.12 gi|297527163|ref|YP_003669187.1| - 0.87 9.7 8.1 1.6 8.8 8.1 1.4 1 0 0 1 1 1 0 Ribosome associated membrane protein RAMP4 GatB_Yqey PF02637.18 gi|297527164|ref|YP_003669188.1| - 0.046 13.6 0.0 0.062 13.2 0.0 1.1 1 0 0 1 1 1 0 GatB domain KH_5 PF13184.6 gi|297527164|ref|YP_003669188.1| - 0.059 13.5 0.3 0.11 12.6 0.3 1.4 1 0 0 1 1 1 0 NusA-like KH domain Metallophos PF00149.28 gi|297527166|ref|YP_003669190.1| - 6.9e-24 85.5 0.0 9.3e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|297527166|ref|YP_003669190.1| - 0.00093 19.4 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_m1G_MT PF01746.21 gi|297527166|ref|YP_003669190.1| - 0.0075 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase HTH_38 PF13936.6 gi|297527167|ref|YP_003669191.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_37 PF18665.1 gi|297527167|ref|YP_003669191.1| - 1.1 9.9 8.0 3.3 8.3 0.8 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF1280 PF06918.14 gi|297527168|ref|YP_003669192.1| - 0.0021 17.7 1.2 0.003 17.2 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1280) RE_ScaI PF09569.10 gi|297527168|ref|YP_003669192.1| - 0.0084 15.8 0.1 0.012 15.4 0.1 1.2 1 0 0 1 1 1 1 ScaI restriction endonuclease Myb_DNA-bind_4 PF13837.6 gi|297527168|ref|YP_003669192.1| - 0.029 14.7 0.4 0.17 12.2 0.2 2.0 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain HWE_HK PF07536.14 gi|297527168|ref|YP_003669192.1| - 0.1 13.3 0.0 0.16 12.7 0.0 1.3 1 0 0 1 1 1 0 HWE histidine kinase GatB_N PF02934.15 gi|297527169|ref|YP_003669193.1| - 4.2e-76 255.9 0.0 6.4e-76 255.3 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|297527169|ref|YP_003669193.1| - 2.1e-26 92.5 5.7 6.2e-26 91.1 5.7 1.8 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|297527169|ref|YP_003669193.1| - 8.4e-19 67.6 0.0 5e-18 65.1 0.0 2.4 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|297527169|ref|YP_003669193.1| - 0.0001 22.4 5.6 0.00058 20.0 5.6 2.2 1 1 0 1 1 1 1 Yqey-like protein Asparaginase PF00710.20 gi|297527170|ref|YP_003669194.1| - 8e-59 198.4 0.1 2.3e-58 196.9 0.1 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|297527170|ref|YP_003669194.1| - 2e-34 118.2 0.0 2e-33 115.0 0.0 2.3 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|297527170|ref|YP_003669194.1| - 2e-21 75.0 1.2 4.8e-21 73.8 1.2 1.7 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|297527170|ref|YP_003669194.1| - 0.011 15.4 0.1 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein domain Ribosomal_S30 PF04758.14 gi|297527171|ref|YP_003669195.1| - 3.8e-14 52.6 1.9 4.6e-14 52.4 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Nop PF01798.18 gi|297527172|ref|YP_003669196.1| - 6.6e-74 248.3 0.0 9.7e-74 247.7 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HhH-GPD PF00730.25 gi|297527172|ref|YP_003669196.1| - 0.069 13.6 0.0 0.34 11.4 0.0 2.1 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Fibrillarin PF01269.17 gi|297527173|ref|YP_003669197.1| - 4.9e-104 346.4 0.0 5.6e-104 346.2 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 gi|297527173|ref|YP_003669197.1| - 0.006 16.3 0.0 0.011 15.4 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|297527173|ref|YP_003669197.1| - 0.015 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_3 PF01381.22 gi|297527174|ref|YP_003669198.1| - 2.4e-13 49.9 0.1 1.3e-12 47.6 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix HTH_19 PF12844.7 gi|297527174|ref|YP_003669198.1| - 5.4e-09 35.9 0.3 6.1e-08 32.6 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|297527174|ref|YP_003669198.1| - 1.5e-05 25.2 0.0 4.2e-05 23.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|297527174|ref|YP_003669198.1| - 0.0029 17.5 0.0 0.013 15.5 0.0 2.1 1 0 0 1 1 1 1 HTH domain YdaS_antitoxin PF15943.5 gi|297527174|ref|YP_003669198.1| - 0.0035 17.2 0.1 0.024 14.5 0.0 2.4 3 0 0 3 3 3 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT UPF0180 PF03698.13 gi|297527174|ref|YP_003669198.1| - 0.004 17.3 0.1 0.041 14.1 0.1 2.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0180) HTH_26 PF13443.6 gi|297527174|ref|YP_003669198.1| - 0.006 17.0 0.0 0.026 15.0 0.0 2.1 3 0 0 3 3 3 1 Cro/C1-type HTH DNA-binding domain TetR_N PF00440.23 gi|297527174|ref|YP_003669198.1| - 0.12 12.2 0.0 0.3 10.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family NTPase_1 PF03266.15 gi|297527175|ref|YP_003669199.1| - 2.9e-53 180.2 0.6 3.4e-53 180.0 0.6 1.0 1 0 0 1 1 1 1 NTPase AAA PF00004.29 gi|297527175|ref|YP_003669199.1| - 1.4e-06 28.8 0.1 1.8e-06 28.4 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|297527175|ref|YP_003669199.1| - 0.00014 21.9 1.1 0.00024 21.2 1.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|297527175|ref|YP_003669199.1| - 0.0002 21.6 0.1 0.00063 20.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|297527175|ref|YP_003669199.1| - 0.0031 17.4 0.2 0.0093 15.9 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|297527175|ref|YP_003669199.1| - 0.0041 17.5 0.0 0.0065 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain MeaB PF03308.16 gi|297527175|ref|YP_003669199.1| - 0.0042 16.1 0.0 0.0068 15.4 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|297527175|ref|YP_003669199.1| - 0.0043 17.0 0.1 0.01 15.8 0.0 1.6 2 0 0 2 2 2 1 NACHT domain ABC_tran PF00005.27 gi|297527175|ref|YP_003669199.1| - 0.005 17.4 1.2 0.0062 17.1 1.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|297527175|ref|YP_003669199.1| - 0.007 16.1 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|297527175|ref|YP_003669199.1| - 0.0071 16.3 1.4 0.0089 16.0 0.3 1.8 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|297527175|ref|YP_003669199.1| - 0.016 15.6 0.0 0.031 14.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|297527175|ref|YP_003669199.1| - 0.018 15.0 0.2 0.06 13.2 0.1 1.9 1 1 1 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 gi|297527175|ref|YP_003669199.1| - 0.024 13.8 0.1 0.048 12.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|297527175|ref|YP_003669199.1| - 0.024 14.6 1.0 0.2 11.7 0.9 2.4 1 1 1 2 2 2 0 AAA domain cobW PF02492.19 gi|297527175|ref|YP_003669199.1| - 0.028 14.0 0.6 0.082 12.5 0.2 1.8 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|297527175|ref|YP_003669199.1| - 0.035 14.4 0.5 0.49 10.7 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|297527175|ref|YP_003669199.1| - 0.038 13.7 0.1 0.063 13.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|297527175|ref|YP_003669199.1| - 0.044 14.3 0.1 0.082 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|297527175|ref|YP_003669199.1| - 0.057 13.2 0.1 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF2075 PF09848.9 gi|297527175|ref|YP_003669199.1| - 0.07 12.4 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) FeoB_N PF02421.18 gi|297527175|ref|YP_003669199.1| - 0.075 12.6 0.1 0.15 11.6 0.1 1.6 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_24 PF13479.6 gi|297527175|ref|YP_003669199.1| - 0.086 12.6 0.1 0.12 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|297527175|ref|YP_003669199.1| - 0.091 12.8 0.1 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF2478 PF10649.9 gi|297527175|ref|YP_003669199.1| - 0.097 12.3 0.0 0.26 10.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) TRM PF02005.16 gi|297527176|ref|YP_003669200.1| - 1.1e-74 251.9 0.0 1.2e-74 251.8 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|297527176|ref|YP_003669200.1| - 0.0043 16.8 0.0 0.0064 16.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein RNA_pol_Rpc34 PF05158.12 gi|297527177|ref|YP_003669201.1| - 4.6e-06 26.3 0.4 0.0031 17.0 0.0 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit HTH_24 PF13412.6 gi|297527177|ref|YP_003669201.1| - 3.1e-05 23.4 0.0 6e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|297527177|ref|YP_003669201.1| - 9e-05 22.3 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|297527177|ref|YP_003669201.1| - 0.00048 19.9 0.0 0.00086 19.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|297527177|ref|YP_003669201.1| - 0.0019 18.1 0.2 0.0029 17.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|297527177|ref|YP_003669201.1| - 0.0053 16.9 0.0 0.0075 16.4 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|297527177|ref|YP_003669201.1| - 0.0054 16.6 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|297527177|ref|YP_003669201.1| - 0.029 14.8 0.0 0.057 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|297527177|ref|YP_003669201.1| - 0.047 13.7 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.7 gi|297527177|ref|YP_003669201.1| - 0.062 13.4 0.0 0.15 12.2 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|297527177|ref|YP_003669201.1| - 0.17 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TFIIB PF00382.19 gi|297527178|ref|YP_003669202.1| - 9.8e-21 73.6 0.1 1.1e-14 54.2 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|297527178|ref|YP_003669202.1| - 1.1e-17 63.3 0.8 1.9e-17 62.5 0.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|297527178|ref|YP_003669202.1| - 0.0016 18.2 0.3 0.019 14.7 0.0 2.3 1 1 1 2 2 2 1 Cyclin, N-terminal domain zf-RRN7 PF11781.8 gi|297527178|ref|YP_003669202.1| - 0.0023 17.6 3.4 0.0082 15.8 3.4 1.9 1 1 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF632 PF04782.12 gi|297527178|ref|YP_003669202.1| - 0.0028 17.0 0.7 0.0041 16.5 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF632) Lar_restr_allev PF14354.6 gi|297527178|ref|YP_003669202.1| - 0.0028 18.0 0.2 0.0054 17.1 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|297527178|ref|YP_003669202.1| - 0.0034 17.3 1.2 0.0059 16.6 1.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|297527178|ref|YP_003669202.1| - 0.0098 15.6 1.0 4.7 7.1 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|297527178|ref|YP_003669202.1| - 0.013 14.9 0.7 0.67 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_9 PF13901.6 gi|297527178|ref|YP_003669202.1| - 0.014 15.4 1.9 0.016 15.2 0.6 1.7 2 0 0 2 2 2 0 Putative zinc-RING and/or ribbon KORA PF16509.5 gi|297527178|ref|YP_003669202.1| - 0.017 15.4 0.3 3.8 7.9 0.0 2.5 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor Ribosomal_S27e PF01667.17 gi|297527178|ref|YP_003669202.1| - 0.018 14.7 0.4 0.032 14.0 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zinc_ribbon_10 PF10058.9 gi|297527178|ref|YP_003669202.1| - 0.018 14.7 1.1 0.041 13.6 1.1 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Cyclin_C PF02984.19 gi|297527178|ref|YP_003669202.1| - 0.023 14.8 0.2 7.8 6.6 0.1 2.5 1 1 1 2 2 2 0 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|297527178|ref|YP_003669202.1| - 0.024 14.6 0.6 0.055 13.4 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|297527178|ref|YP_003669202.1| - 0.031 13.9 0.5 0.34 10.6 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|297527178|ref|YP_003669202.1| - 0.039 14.1 1.9 3.1 8.0 0.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|297527178|ref|YP_003669202.1| - 0.068 12.9 0.8 0.14 11.9 0.8 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-ISL3 PF14690.6 gi|297527178|ref|YP_003669202.1| - 0.079 13.6 0.4 5.9 7.7 0.1 2.7 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3268 PF11672.8 gi|297527178|ref|YP_003669202.1| - 0.15 12.4 1.1 0.45 10.9 1.1 1.8 1 0 0 1 1 1 0 zinc-finger-containing domain DZR PF12773.7 gi|297527178|ref|YP_003669202.1| - 0.15 12.1 0.4 0.27 11.3 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|297527178|ref|YP_003669202.1| - 1.3 9.0 3.0 5.6 7.0 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Gar1 PF04410.14 gi|297527179|ref|YP_003669203.1| - 1.3e-07 31.5 0.1 1.5e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Ada3 PF10198.9 gi|297527179|ref|YP_003669203.1| - 0.025 14.7 0.3 0.035 14.2 0.3 1.2 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 Adeno_E4 PF05385.11 gi|297527179|ref|YP_003669203.1| - 0.096 12.8 0.2 0.14 12.3 0.2 1.2 1 0 0 1 1 1 0 Mastadenovirus early E4 13 kDa protein SRP19 PF01922.17 gi|297527180|ref|YP_003669204.1| - 5.3e-22 78.6 0.2 7.1e-22 78.2 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.22 gi|297527181|ref|YP_003669205.1| - 5.8e-36 123.7 1.8 7.4e-36 123.3 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e OrfB_Zn_ribbon PF07282.11 gi|297527182|ref|YP_003669206.1| - 1.1e-23 82.9 0.1 3.9e-23 81.2 0.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|297527182|ref|YP_003669206.1| - 4.5e-07 30.1 1.6 4e-06 27.1 0.5 2.5 2 0 0 2 2 2 1 Probable transposase DUF3071 PF11268.8 gi|297527182|ref|YP_003669206.1| - 0.025 14.6 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) Vps36-NZF-N PF16988.5 gi|297527182|ref|YP_003669206.1| - 0.089 12.2 0.5 0.31 10.5 0.5 1.9 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Castor_Poll_mid PF06241.12 gi|297527182|ref|YP_003669206.1| - 0.11 12.4 0.3 0.23 11.4 0.3 1.5 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel DUF848 PF05852.11 gi|297527182|ref|YP_003669206.1| - 0.12 12.4 0.2 0.23 11.6 0.2 1.3 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) Resolvase PF00239.21 gi|297527183|ref|YP_003669207.1| - 3.7e-25 88.7 0.6 4.7e-25 88.4 0.6 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|297527183|ref|YP_003669207.1| - 4.5e-15 55.6 2.7 1.9e-14 53.6 1.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MerR PF00376.23 gi|297527183|ref|YP_003669207.1| - 0.00014 21.6 0.7 0.0003 20.5 0.7 1.6 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|297527183|ref|YP_003669207.1| - 0.011 15.8 1.5 0.015 15.3 0.3 1.9 2 0 0 2 2 2 0 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|297527183|ref|YP_003669207.1| - 0.011 15.5 0.7 0.031 14.1 0.5 2.0 1 1 1 2 2 2 0 Homeodomain-like domain Exc PF07825.11 gi|297527183|ref|YP_003669207.1| - 0.021 14.8 0.1 0.039 13.9 0.1 1.4 1 0 0 1 1 1 0 Excisionase-like protein HTH_Tnp_ISL3 PF13542.6 gi|297527183|ref|YP_003669207.1| - 0.024 14.0 0.0 0.12 11.8 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 gi|297527183|ref|YP_003669207.1| - 0.069 13.2 0.0 0.3 11.2 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix B12-binding PF02310.19 gi|297527183|ref|YP_003669207.1| - 0.072 13.1 0.0 0.17 11.9 0.0 1.6 1 1 1 2 2 2 0 B12 binding domain Helicase_C PF00271.31 gi|297527183|ref|YP_003669207.1| - 0.079 13.3 0.0 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 Helicase conserved C-terminal domain LacI PF00356.21 gi|297527183|ref|YP_003669207.1| - 0.086 12.7 1.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family YdaS_antitoxin PF15943.5 gi|297527183|ref|YP_003669207.1| - 0.11 12.3 0.1 0.26 11.2 0.1 1.7 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF3892 PF13031.6 gi|297527183|ref|YP_003669207.1| - 0.19 12.4 2.5 2.8 8.6 0.4 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3892) HTH_50 PF18024.1 gi|297527183|ref|YP_003669207.1| - 0.64 9.7 3.1 1.6 8.4 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain NTPase_I-T PF01931.18 gi|297527184|ref|YP_003669208.1| - 3.4e-09 36.7 0.0 3.9e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Prenyltransf PF01255.19 gi|297527185|ref|YP_003669209.1| - 3.5e-75 252.4 0.0 4.1e-75 252.1 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase LPP PF04728.13 gi|297527186|ref|YP_003669210.1| - 2.4e-08 34.3 21.5 0.061 13.7 0.7 5.5 3 1 2 5 5 5 4 Lipoprotein leucine-zipper Laminin_II PF06009.12 gi|297527186|ref|YP_003669210.1| - 2.9e-07 30.6 15.4 2.9e-07 30.6 15.4 4.1 1 1 3 4 4 3 2 Laminin Domain II Fez1 PF06818.15 gi|297527186|ref|YP_003669210.1| - 1.2e-05 25.9 51.9 0.011 16.2 22.7 2.1 1 1 1 2 2 2 2 Fez1 DUF948 PF06103.11 gi|297527186|ref|YP_003669210.1| - 1.4e-05 25.2 20.6 0.00011 22.3 5.2 4.8 1 1 3 4 4 4 1 Bacterial protein of unknown function (DUF948) ADIP PF11559.8 gi|297527186|ref|YP_003669210.1| - 3e-05 24.1 20.5 3e-05 24.1 20.5 3.6 1 1 1 3 3 3 2 Afadin- and alpha -actinin-Binding Spc7 PF08317.11 gi|297527186|ref|YP_003669210.1| - 4.4e-05 22.5 56.2 0.024 13.5 30.4 2.8 1 1 1 2 2 2 2 Spc7 kinetochore protein MbeD_MobD PF04899.12 gi|297527186|ref|YP_003669210.1| - 4.6e-05 23.4 9.3 0.27 11.4 0.1 4.6 2 2 1 3 3 3 2 MbeD/MobD like NPV_P10 PF05531.12 gi|297527186|ref|YP_003669210.1| - 7.3e-05 23.1 30.7 0.00017 22.0 7.7 4.9 2 2 3 5 5 4 1 Nucleopolyhedrovirus P10 protein APG6_N PF17675.1 gi|297527186|ref|YP_003669210.1| - 0.00022 21.8 57.4 0.00055 20.5 22.1 3.9 1 1 3 4 4 3 2 Apg6 coiled-coil region HsbA PF12296.8 gi|297527186|ref|YP_003669210.1| - 0.00038 20.9 11.3 0.019 15.4 2.1 4.2 2 2 1 3 3 3 1 Hydrophobic surface binding protein A Filament PF00038.21 gi|297527186|ref|YP_003669210.1| - 0.00054 19.6 46.8 0.026 14.1 11.6 2.8 1 1 1 2 2 2 2 Intermediate filament protein DUF3584 PF12128.8 gi|297527186|ref|YP_003669210.1| - 0.00094 16.8 44.1 0.0013 16.4 44.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.12 gi|297527186|ref|YP_003669210.1| - 0.001 19.1 30.9 0.012 15.6 20.0 3.7 1 1 3 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 gi|297527186|ref|YP_003669210.1| - 0.0011 17.7 49.2 0.057 12.1 46.6 2.8 1 1 1 2 2 2 1 AAA domain Syntaxin_2 PF14523.6 gi|297527186|ref|YP_003669210.1| - 0.0023 18.2 19.0 0.0023 18.2 19.0 3.8 1 1 1 3 3 3 1 Syntaxin-like protein ATG16 PF08614.11 gi|297527186|ref|YP_003669210.1| - 0.0028 17.9 44.5 0.09 13.0 22.0 2.8 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) DUF1664 PF07889.12 gi|297527186|ref|YP_003669210.1| - 0.0053 16.8 11.9 0.0053 16.8 11.9 4.5 1 1 3 4 4 4 2 Protein of unknown function (DUF1664) Laminin_I PF06008.14 gi|297527186|ref|YP_003669210.1| - 0.0057 16.4 45.9 0.18 11.5 9.6 2.9 1 1 2 3 3 3 2 Laminin Domain I FlaC_arch PF05377.11 gi|297527186|ref|YP_003669210.1| - 0.0072 16.7 9.0 0.0072 16.7 9.0 6.4 2 1 3 6 6 6 3 Flagella accessory protein C (FlaC) Sec34 PF04136.15 gi|297527186|ref|YP_003669210.1| - 0.0075 16.2 6.9 0.0075 16.2 6.9 4.3 1 1 2 4 4 4 1 Sec34-like family Snapin_Pallidin PF14712.6 gi|297527186|ref|YP_003669210.1| - 0.0075 16.7 14.3 0.0075 16.7 14.3 5.1 1 1 4 5 5 5 1 Snapin/Pallidin DUF4988 PF16378.5 gi|297527186|ref|YP_003669210.1| - 0.0089 15.7 4.5 0.0089 15.7 4.5 4.7 1 1 3 5 5 5 1 Domain of unknown function HOOK PF05622.12 gi|297527186|ref|YP_003669210.1| - 0.0092 14.2 58.7 0.019 13.1 35.8 2.3 1 1 1 2 2 2 1 HOOK protein TMF_TATA_bd PF12325.8 gi|297527186|ref|YP_003669210.1| - 0.011 16.0 13.3 0.011 16.0 13.3 4.3 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding eIF3_N PF09440.10 gi|297527186|ref|YP_003669210.1| - 0.012 16.0 8.8 0.012 16.0 8.8 4.1 1 1 2 3 3 2 0 eIF3 subunit 6 N terminal domain DUF16 PF01519.16 gi|297527186|ref|YP_003669210.1| - 0.013 15.9 8.0 0.013 15.9 8.0 4.5 1 1 2 3 3 2 0 Protein of unknown function DUF16 Mce4_CUP1 PF11887.8 gi|297527186|ref|YP_003669210.1| - 0.014 14.9 2.1 0.034 13.6 0.3 2.2 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative BRE1 PF08647.11 gi|297527186|ref|YP_003669210.1| - 0.016 15.2 17.4 0.016 15.2 17.4 4.7 3 2 0 3 3 3 0 BRE1 E3 ubiquitin ligase FlxA PF14282.6 gi|297527186|ref|YP_003669210.1| - 0.018 15.0 14.9 0.018 15.0 14.9 5.5 2 1 4 6 6 5 0 FlxA-like protein DUF2730 PF10805.8 gi|297527186|ref|YP_003669210.1| - 0.022 14.9 7.4 0.022 14.9 7.4 5.0 1 1 5 6 6 6 0 Protein of unknown function (DUF2730) TMF_DNA_bd PF12329.8 gi|297527186|ref|YP_003669210.1| - 0.022 14.7 13.8 0.022 14.7 13.8 6.5 1 1 5 6 6 5 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 gi|297527186|ref|YP_003669210.1| - 0.026 15.1 5.3 0.026 15.1 5.3 6.0 2 2 4 6 6 6 0 SlyX ApoO PF09769.9 gi|297527186|ref|YP_003669210.1| - 0.027 14.4 1.7 0.027 14.4 1.7 2.9 2 2 1 3 3 2 0 Apolipoprotein O DUF2612 PF11041.8 gi|297527186|ref|YP_003669210.1| - 0.035 14.0 0.1 1.4 8.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2612) DUF5082 PF16888.5 gi|297527186|ref|YP_003669210.1| - 0.052 13.8 51.6 0.073 13.3 22.6 4.2 2 2 2 4 4 4 0 Domain of unknown function (DUF5082) WXG100 PF06013.12 gi|297527186|ref|YP_003669210.1| - 0.057 13.7 12.4 0.2 11.9 2.7 5.1 3 2 0 4 4 4 0 Proteins of 100 residues with WXG EzrA PF06160.12 gi|297527186|ref|YP_003669210.1| - 0.06 11.5 56.1 0.05 11.8 35.3 2.4 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA COG5 PF10392.9 gi|297527186|ref|YP_003669210.1| - 0.064 13.4 36.8 0.092 12.9 3.4 4.5 1 1 3 4 4 4 0 Golgi transport complex subunit 5 HisKA_3 PF07730.13 gi|297527186|ref|YP_003669210.1| - 0.079 13.5 13.6 0.84 10.2 1.9 4.9 3 2 1 4 4 3 0 Histidine kinase DUF4407 PF14362.6 gi|297527186|ref|YP_003669210.1| - 0.096 12.0 26.1 4 6.7 16.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF4763 PF15960.5 gi|297527186|ref|YP_003669210.1| - 0.13 11.6 41.1 0.19 11.0 9.4 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) Taxilin PF09728.9 gi|297527186|ref|YP_003669210.1| - 0.14 11.3 56.8 2.3 7.3 51.8 3.0 1 1 0 1 1 1 0 Myosin-like coiled-coil protein FliJ PF02050.16 gi|297527186|ref|YP_003669210.1| - 0.22 11.8 48.9 0.058 13.6 13.9 4.5 1 1 3 4 4 3 0 Flagellar FliJ protein BAR_3 PF16746.5 gi|297527186|ref|YP_003669210.1| - 0.24 11.1 43.4 1.3 8.6 17.2 2.7 1 1 1 2 2 2 0 BAR domain of APPL family SHE3 PF17078.5 gi|297527186|ref|YP_003669210.1| - 0.29 10.8 49.5 9.1 5.9 19.2 3.1 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 IFT57 PF10498.9 gi|297527186|ref|YP_003669210.1| - 0.34 9.8 52.8 0.016 14.2 25.5 3.4 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 GAS PF13851.6 gi|297527186|ref|YP_003669210.1| - 0.42 9.9 65.7 0.026 13.9 23.9 3.9 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding Mod_r PF07200.13 gi|297527186|ref|YP_003669210.1| - 0.47 10.5 53.0 0.25 11.5 18.0 4.2 1 1 3 4 4 3 0 Modifier of rudimentary (Mod(r)) protein DUF3450 PF11932.8 gi|297527186|ref|YP_003669210.1| - 0.53 9.6 41.5 0.39 10.0 20.7 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) TMPIT PF07851.13 gi|297527186|ref|YP_003669210.1| - 0.56 9.4 43.2 0.038 13.3 14.7 3.2 1 1 3 4 4 3 0 TMPIT-like protein HAUS-augmin3 PF14932.6 gi|297527186|ref|YP_003669210.1| - 0.62 9.6 41.9 0.27 10.8 10.7 3.0 1 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 BST2 PF16716.5 gi|297527186|ref|YP_003669210.1| - 0.71 10.5 43.1 0.75 10.4 0.7 5.1 2 2 2 4 4 4 0 Bone marrow stromal antigen 2 FUSC PF04632.12 gi|297527186|ref|YP_003669210.1| - 0.78 8.2 3.0 1.6 7.1 0.1 2.0 1 1 0 2 2 2 0 Fusaric acid resistance protein family APG17 PF04108.12 gi|297527186|ref|YP_003669210.1| - 0.82 8.7 36.4 0.54 9.3 19.6 3.0 1 1 0 2 2 2 0 Autophagy protein Apg17 YscO PF07321.12 gi|297527186|ref|YP_003669210.1| - 0.96 9.4 43.5 0.48 10.4 14.4 3.8 1 1 3 4 4 4 0 Type III secretion protein YscO DUF4618 PF15397.6 gi|297527186|ref|YP_003669210.1| - 1.1 8.6 55.4 0.49 9.8 31.6 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) YtxH PF12732.7 gi|297527186|ref|YP_003669210.1| - 1.1 9.8 26.2 1.6 9.3 0.7 5.0 2 2 1 3 3 3 0 YtxH-like protein Seryl_tRNA_N PF02403.22 gi|297527186|ref|YP_003669210.1| - 1.2 9.4 64.0 2.7 8.3 26.2 4.4 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain MAD PF05557.13 gi|297527186|ref|YP_003669210.1| - 1.4 7.2 56.0 3.6 5.8 26.3 2.4 1 1 1 2 2 2 0 Mitotic checkpoint protein DUF4201 PF13870.6 gi|297527186|ref|YP_003669210.1| - 1.5 8.5 67.4 0.45 10.2 16.8 4.1 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) SOGA PF11365.8 gi|297527186|ref|YP_003669210.1| - 1.7 9.8 51.9 0.11 13.7 3.3 4.8 1 1 3 4 4 3 0 Protein SOGA MAP65_ASE1 PF03999.12 gi|297527186|ref|YP_003669210.1| - 1.9 7.1 58.5 3.7 6.1 53.8 2.1 1 1 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) HN PF00423.19 gi|297527186|ref|YP_003669210.1| - 2.2 7.0 8.3 4 6.1 8.3 1.3 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase SKA1 PF07160.12 gi|297527186|ref|YP_003669210.1| - 2.2 8.1 45.4 1.2 8.9 23.4 4.1 1 1 3 4 4 4 0 Spindle and kinetochore-associated protein 1 PilJ PF13675.6 gi|297527186|ref|YP_003669210.1| - 2.3 8.3 11.3 5.7 7.0 1.4 3.6 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Spectrin PF00435.21 gi|297527186|ref|YP_003669210.1| - 2.5 8.6 45.9 1.2 9.7 10.0 4.5 2 2 2 4 4 4 0 Spectrin repeat Retrotrans_gag PF03732.17 gi|297527186|ref|YP_003669210.1| - 2.7 8.3 13.4 2.9 8.2 1.0 3.7 2 1 1 3 3 2 0 Retrotransposon gag protein TolA_bind_tri PF16331.5 gi|297527186|ref|YP_003669210.1| - 2.9 8.0 36.6 9.5 6.4 2.9 5.1 2 2 1 3 3 3 0 TolA binding protein trimerisation KASH_CCD PF14662.6 gi|297527186|ref|YP_003669210.1| - 2.9 7.7 66.9 0.3 10.9 26.9 3.5 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 or KASH AAR2 PF05282.11 gi|297527186|ref|YP_003669210.1| - 3 7.1 20.8 0.94 8.8 6.4 2.8 1 1 2 3 3 3 0 AAR2 protein T3SSipB PF16535.5 gi|297527186|ref|YP_003669210.1| - 3.1 8.3 17.6 1.7 9.1 7.3 2.8 1 1 1 2 2 2 0 Type III cell invasion protein SipB MCPsignal PF00015.21 gi|297527186|ref|YP_003669210.1| - 3.4 7.5 19.5 2.1 8.1 11.4 3.4 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain COG2 PF06148.11 gi|297527186|ref|YP_003669210.1| - 3.5 7.7 41.8 13 5.9 2.7 5.1 1 1 4 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Lebercilin PF15619.6 gi|297527186|ref|YP_003669210.1| - 3.5 7.2 66.0 19 4.8 11.2 4.1 1 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease SF-assemblin PF06705.11 gi|297527186|ref|YP_003669210.1| - 3.7 6.8 57.0 0.89 8.9 14.5 3.2 1 1 2 3 3 3 0 SF-assemblin/beta giardin HSBP1 PF06825.12 gi|297527186|ref|YP_003669210.1| - 4 7.4 20.9 0.92 9.4 4.0 4.4 3 1 1 4 4 4 0 Heat shock factor binding protein 1 CENP-H PF05837.12 gi|297527186|ref|YP_003669210.1| - 4 7.9 52.7 0.81 10.1 9.7 4.4 1 1 4 5 5 5 0 Centromere protein H (CENP-H) DUF2431 PF10354.9 gi|297527186|ref|YP_003669210.1| - 4.2 7.6 8.2 60 3.9 4.5 3.0 1 1 0 2 2 1 0 Domain of unknown function (DUF2431) LXG PF04740.12 gi|297527186|ref|YP_003669210.1| - 4.8 6.8 32.3 0.019 14.7 15.1 3.3 2 1 0 3 3 2 0 LXG domain of WXG superfamily PI3K_P85_iSH2 PF16454.5 gi|297527186|ref|YP_003669210.1| - 5 6.7 53.4 15 5.2 3.0 3.5 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Syntaxin PF00804.25 gi|297527186|ref|YP_003669210.1| - 5.1 6.7 47.0 0.037 13.7 25.9 2.4 1 1 0 2 2 2 0 Syntaxin Atg14 PF10186.9 gi|297527186|ref|YP_003669210.1| - 5.1 6.1 64.0 1.2 8.2 36.3 3.5 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Phage_GPO PF05929.11 gi|297527186|ref|YP_003669210.1| - 6.4 6.3 22.1 3.4 7.2 13.2 2.9 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase Sulfatase_C PF14707.6 gi|297527186|ref|YP_003669210.1| - 6.5 7.5 12.4 14 6.5 0.5 4.4 2 2 2 4 4 3 0 C-terminal region of aryl-sulfatase CREPT PF16566.5 gi|297527186|ref|YP_003669210.1| - 6.9 6.8 46.9 10 6.3 12.8 4.1 1 1 2 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour TPR_MLP1_2 PF07926.12 gi|297527186|ref|YP_003669210.1| - 7 6.7 52.0 0.51 10.4 19.9 4.5 1 1 3 4 4 3 0 TPR/MLP1/MLP2-like protein CSN4_RPN5_eIF3a PF18420.1 gi|297527186|ref|YP_003669210.1| - 7.9 6.7 16.7 10 6.4 0.1 5.2 2 1 2 4 4 4 0 CSN4/RPN5/eIF3a helix turn helix domain DUF2400 PF09674.10 gi|297527186|ref|YP_003669210.1| - 8 6.4 18.8 12 5.9 1.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2400) DASH_Hsk3 PF08227.11 gi|297527186|ref|YP_003669210.1| - 8.2 6.9 9.9 15 6.1 2.5 4.3 3 1 1 4 4 3 0 DASH complex subunit Hsk3 like COG6 PF06419.11 gi|297527186|ref|YP_003669210.1| - 8.3 4.5 40.8 0.5 8.5 12.2 3.6 2 2 2 4 4 4 0 Conserved oligomeric complex COG6 CENP-F_leu_zip PF10473.9 gi|297527186|ref|YP_003669210.1| - 8.5 6.4 67.0 3.2 7.8 33.2 4.4 1 1 3 4 4 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.9 gi|297527186|ref|YP_003669210.1| - 9.3 6.6 45.3 0.11 12.8 10.4 5.3 1 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dam1 PF08653.10 gi|297527186|ref|YP_003669210.1| - 9.6 6.1 17.8 3.3 7.6 1.8 5.6 3 2 2 5 5 5 0 DASH complex subunit Dam1 Fib_alpha PF08702.10 gi|297527186|ref|YP_003669210.1| - 9.6 6.4 52.9 2 8.6 17.7 4.4 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family ATP-grasp_5 PF13549.6 gi|297527187|ref|YP_003669211.1| - 1.8e-84 282.6 0.2 2e-84 282.5 0.2 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|297527187|ref|YP_003669211.1| - 6.8e-06 25.8 0.6 9.4e-06 25.3 0.6 1.3 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|297527187|ref|YP_003669211.1| - 0.046 13.2 0.1 0.06 12.8 0.1 1.5 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain BTHB PF18410.1 gi|297527187|ref|YP_003669211.1| - 0.068 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Basic tilted helix bundle domain Succ_CoA_lig PF13607.6 gi|297527188|ref|YP_003669212.1| - 1e-49 167.9 0.1 6.9e-48 162.0 0.0 2.8 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|297527188|ref|YP_003669212.1| - 1e-29 103.4 0.1 1.8e-28 99.4 0.1 2.6 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|297527188|ref|YP_003669212.1| - 8.9e-15 55.2 0.9 3.8e-14 53.1 0.7 2.1 2 0 0 2 2 2 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|297527188|ref|YP_003669212.1| - 0.056 13.4 0.1 0.54 10.2 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PBP_dimer PF03717.15 gi|297527188|ref|YP_003669212.1| - 0.07 13.5 0.0 0.14 12.4 0.0 1.5 1 1 0 1 1 1 0 Penicillin-binding Protein dimerisation domain F420_oxidored PF03807.17 gi|297527188|ref|YP_003669212.1| - 0.082 13.5 0.1 7.7 7.2 0.0 2.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|297527188|ref|YP_003669212.1| - 0.17 12.7 0.1 6.9 7.5 0.0 2.9 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP_bind_1 PF03029.17 gi|297527189|ref|YP_003669213.1| - 5.7e-59 199.8 0.0 6.5e-59 199.6 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|297527189|ref|YP_003669213.1| - 8.2e-05 23.2 0.0 0.00022 21.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|297527189|ref|YP_003669213.1| - 0.00017 21.4 0.0 0.0013 18.6 0.0 2.1 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_28 PF13521.6 gi|297527189|ref|YP_003669213.1| - 0.00022 21.5 0.0 0.00096 19.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|297527189|ref|YP_003669213.1| - 0.00054 19.6 0.0 0.003 17.2 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain DUF87 PF01935.17 gi|297527189|ref|YP_003669213.1| - 0.0015 18.7 0.1 0.0037 17.4 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain KTI12 PF08433.10 gi|297527189|ref|YP_003669213.1| - 0.0018 17.8 0.0 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 PduV-EutP PF10662.9 gi|297527189|ref|YP_003669213.1| - 0.0029 17.4 0.4 0.11 12.3 0.0 2.7 3 1 0 3 3 2 1 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|297527189|ref|YP_003669213.1| - 0.0062 15.5 0.0 0.013 14.5 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ArsA_ATPase PF02374.15 gi|297527189|ref|YP_003669213.1| - 0.0068 15.6 0.0 0.017 14.3 0.0 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase NACHT PF05729.12 gi|297527189|ref|YP_003669213.1| - 0.0071 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SSE PF00437.20 gi|297527189|ref|YP_003669213.1| - 0.0075 15.4 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein GTP_EFTU PF00009.27 gi|297527189|ref|YP_003669213.1| - 0.0078 15.8 0.6 0.43 10.1 0.6 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|297527189|ref|YP_003669213.1| - 0.0098 16.3 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain CbiA PF01656.23 gi|297527189|ref|YP_003669213.1| - 0.01 15.9 0.0 0.012 15.7 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 gi|297527189|ref|YP_003669213.1| - 0.011 15.7 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|297527189|ref|YP_003669213.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|297527189|ref|YP_003669213.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|297527189|ref|YP_003669213.1| - 0.045 13.2 0.0 0.093 12.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein RsgA_GTPase PF03193.16 gi|297527189|ref|YP_003669213.1| - 0.049 13.5 0.0 6.3 6.7 0.0 3.0 3 0 0 3 3 3 0 RsgA GTPase IstB_IS21 PF01695.17 gi|297527189|ref|YP_003669213.1| - 0.051 13.3 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PIN PF01850.21 gi|297527189|ref|YP_003669213.1| - 0.079 13.5 0.3 0.32 11.5 0.1 2.1 2 0 0 2 2 2 0 PIN domain MMR_HSR1 PF01926.23 gi|297527189|ref|YP_003669213.1| - 0.085 13.0 0.1 0.67 10.1 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|297527189|ref|YP_003669213.1| - 0.091 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|297527189|ref|YP_003669213.1| - 0.11 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_22 PF13401.6 gi|297527189|ref|YP_003669213.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|297527189|ref|YP_003669213.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.6 gi|297527189|ref|YP_003669213.1| - 0.13 12.2 1.3 2.6 7.9 0.1 2.8 2 1 0 3 3 3 0 AAA domain Viral_helicase1 PF01443.18 gi|297527189|ref|YP_003669213.1| - 0.14 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase WD40_alt PF14077.6 gi|297527189|ref|YP_003669213.1| - 0.16 11.8 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Alternative WD40 repeat motif AAA_29 PF13555.6 gi|297527189|ref|YP_003669213.1| - 0.17 11.6 0.1 0.37 10.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|297527189|ref|YP_003669213.1| - 0.18 12.4 0.0 0.42 11.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|297527189|ref|YP_003669213.1| - 0.2 11.8 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|297527190|ref|YP_003669214.1| - 3.3e-20 73.1 0.0 8.1e-20 71.9 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|297527190|ref|YP_003669214.1| - 0.00017 21.8 0.1 0.00037 20.8 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.12 gi|297527190|ref|YP_003669214.1| - 0.0016 17.9 6.1 0.29 10.7 0.0 3.6 4 0 0 4 4 4 2 TFIIB zinc-binding DZR PF12773.7 gi|297527190|ref|YP_003669214.1| - 0.017 15.2 0.0 0.017 15.2 0.0 2.8 2 1 0 2 2 1 0 Double zinc ribbon Fer4_14 PF13394.6 gi|297527190|ref|YP_003669214.1| - 0.022 14.9 0.1 0.048 13.8 0.1 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain OrfB_Zn_ribbon PF07282.11 gi|297527190|ref|YP_003669214.1| - 0.032 14.1 0.0 0.1 12.5 0.0 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|297527190|ref|YP_003669214.1| - 0.14 11.7 1.3 13 5.3 0.1 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com DpnI PF06044.12 gi|297527190|ref|YP_003669214.1| - 0.17 11.5 3.2 0.46 10.1 0.1 2.4 2 1 0 2 2 2 0 Dam-replacing family zf_C2H2_10 PF18414.1 gi|297527190|ref|YP_003669214.1| - 0.18 11.3 1.5 2.3 7.8 0.1 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-ribbon_3 PF13248.6 gi|297527190|ref|YP_003669214.1| - 0.27 10.7 8.6 0.34 10.4 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain CpXC PF14353.6 gi|297527190|ref|YP_003669214.1| - 0.28 11.3 0.7 15 5.7 0.1 2.4 1 1 1 2 2 2 0 CpXC protein zf-ISL3 PF14690.6 gi|297527190|ref|YP_003669214.1| - 0.34 11.6 6.3 3.6 8.3 0.0 2.9 2 1 1 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.9 gi|297527190|ref|YP_003669214.1| - 3.4 8.0 9.9 54 4.2 0.1 3.9 3 1 1 4 4 4 0 LITAF-like zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|297527190|ref|YP_003669214.1| - 4.7 7.1 9.5 1.7 8.5 0.0 3.3 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger Pribosyltran_N PF13793.6 gi|297527191|ref|YP_003669215.1| - 8.8e-28 96.6 0.1 1.6e-26 92.5 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|297527191|ref|YP_003669215.1| - 3.1e-16 59.3 0.4 6.6e-16 58.2 0.4 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|297527191|ref|YP_003669215.1| - 1.9e-12 47.6 0.9 1.9e-12 47.6 0.9 2.5 3 0 0 3 3 3 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|297527191|ref|YP_003669215.1| - 0.00039 19.9 0.1 0.00078 18.9 0.1 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|297527191|ref|YP_003669215.1| - 0.0027 17.3 0.0 0.0051 16.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase UPF0020 PF01170.18 gi|297527192|ref|YP_003669216.1| - 2.4e-24 86.1 0.0 1.1e-23 84.0 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|297527192|ref|YP_003669216.1| - 2.4e-10 40.5 0.0 3.4e-08 33.5 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_31 PF13847.6 gi|297527192|ref|YP_003669216.1| - 2.3e-05 24.3 0.0 4.2e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|297527192|ref|YP_003669216.1| - 7.7e-05 22.4 0.0 0.00021 21.0 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|297527192|ref|YP_003669216.1| - 0.0011 18.3 0.0 0.0031 16.8 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase MethyltransfD12 PF02086.15 gi|297527192|ref|YP_003669216.1| - 0.022 14.4 0.1 0.8 9.3 0.0 2.8 3 0 0 3 3 3 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_15 PF09445.10 gi|297527192|ref|YP_003669216.1| - 0.044 13.4 0.0 0.089 12.4 0.0 1.6 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase EF-hand_13 PF17958.1 gi|297527192|ref|YP_003669216.1| - 0.1 12.4 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 EF-hand domain MTS PF05175.14 gi|297527192|ref|YP_003669216.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain Lactamase_B_2 PF12706.7 gi|297527193|ref|YP_003669217.1| - 3.7e-20 72.3 0.0 4.6e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.6 gi|297527193|ref|YP_003669217.1| - 2.2e-13 49.7 0.0 4.5e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B PF00753.27 gi|297527193|ref|YP_003669217.1| - 4.5e-08 33.3 0.1 1.2e-07 31.9 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RNA_binding PF01877.17 gi|297527194|ref|YP_003669218.1| - 3.6e-16 59.5 0.3 6.4e-16 58.7 0.3 1.4 1 1 0 1 1 1 1 RNA binding TssD PF17642.1 gi|297527194|ref|YP_003669218.1| - 0.048 13.5 0.1 0.7 9.7 0.0 2.4 2 1 1 3 3 3 0 Hemolysin coregulated protein Hcp (TssD) AAA_17 PF13207.6 gi|297527195|ref|YP_003669219.1| - 7.1e-17 62.1 0.0 1e-16 61.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|297527195|ref|YP_003669219.1| - 2.2e-12 47.6 0.0 3.6e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|297527195|ref|YP_003669219.1| - 6.1e-08 32.9 0.0 1.1e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|297527195|ref|YP_003669219.1| - 0.00075 19.2 0.3 0.3 10.7 0.0 2.3 1 1 1 2 2 2 2 Dephospho-CoA kinase Zeta_toxin PF06414.12 gi|297527195|ref|YP_003669219.1| - 0.0012 18.2 0.0 0.0021 17.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|297527195|ref|YP_003669219.1| - 0.035 14.5 0.0 0.08 13.4 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_2 PF03668.15 gi|297527195|ref|YP_003669219.1| - 0.067 12.5 0.1 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 P-loop ATPase protein family Sulfotransfer_4 PF17784.1 gi|297527195|ref|YP_003669219.1| - 0.083 12.7 0.0 0.11 12.3 0.0 1.3 1 1 0 1 1 1 0 Sulfotransferase domain PGM_PMM_II PF02879.16 gi|297527195|ref|YP_003669219.1| - 0.12 13.0 0.0 7.3 7.3 0.0 2.2 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NB-ARC PF00931.22 gi|297527195|ref|YP_003669219.1| - 0.12 11.5 0.4 0.26 10.4 0.4 1.7 1 1 0 1 1 1 0 NB-ARC domain ApbA_C PF08546.11 gi|297527195|ref|YP_003669219.1| - 0.13 12.5 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal LigT_PEase PF02834.16 gi|297527196|ref|YP_003669220.1| - 2.9e-34 117.1 0.0 5.9e-19 68.1 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|297527196|ref|YP_003669220.1| - 2e-13 50.7 0.0 1.9e-12 47.5 0.0 1.9 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|297527196|ref|YP_003669220.1| - 1e-12 48.2 0.0 1.3e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily HVSL PF09749.9 gi|297527196|ref|YP_003669220.1| - 1.5e-05 24.6 0.0 4e-05 23.2 0.0 1.6 1 1 1 2 2 2 1 Uncharacterised conserved protein Corona_NS2A PF05213.12 gi|297527196|ref|YP_003669220.1| - 0.00016 21.1 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NS2A protein tRNA_NucTransf2 PF09249.11 gi|297527197|ref|YP_003669221.1| - 3.6e-41 139.9 0.0 7.1e-41 139.0 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|297527197|ref|YP_003669221.1| - 1.8e-10 41.0 1.6 4.9e-10 39.6 0.1 2.6 3 0 0 3 3 3 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|297527197|ref|YP_003669221.1| - 1.5e-07 31.7 0.0 3.3e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|297527197|ref|YP_003669221.1| - 0.02 14.9 0.2 0.17 12.0 0.0 2.4 3 0 0 3 3 3 0 Polymerase beta, Nucleotidyltransferase UBA_2 PF08587.11 gi|297527198|ref|YP_003669222.1| - 0.021 14.9 0.2 0.045 13.9 0.2 1.6 1 0 0 1 1 1 0 Ubiquitin associated domain (UBA) Nudix_N_2 PF14803.6 gi|297527199|ref|YP_003669223.1| - 0.0013 18.6 1.5 0.046 13.6 0.5 2.3 2 0 0 2 2 2 1 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|297527199|ref|YP_003669223.1| - 0.014 15.1 4.6 0.33 10.7 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF2757 PF10955.8 gi|297527199|ref|YP_003669223.1| - 0.015 15.5 0.8 0.17 12.2 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) TF_Zn_Ribbon PF08271.12 gi|297527199|ref|YP_003669223.1| - 0.015 14.8 1.2 0.86 9.2 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|297527199|ref|YP_003669223.1| - 0.017 14.5 4.6 0.8 9.2 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|297527199|ref|YP_003669223.1| - 0.049 13.6 1.1 6.5 6.8 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|297527199|ref|YP_003669223.1| - 0.052 13.3 1.3 2.3 8.0 0.2 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HypA PF01155.19 gi|297527199|ref|YP_003669223.1| - 0.064 13.3 0.0 0.16 12.0 0.0 1.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|297527199|ref|YP_003669223.1| - 0.18 11.5 0.6 17 5.1 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TFIIS_C PF01096.18 gi|297527199|ref|YP_003669223.1| - 0.18 11.7 2.0 10 6.1 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|297527199|ref|YP_003669223.1| - 0.32 11.1 4.8 2.3 8.4 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Fer4 PF00037.27 gi|297527200|ref|YP_003669224.1| - 4.4e-10 38.9 10.2 5.2e-05 22.9 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297527200|ref|YP_003669224.1| - 2.6e-09 37.1 3.0 4e-09 36.5 3.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297527200|ref|YP_003669224.1| - 2e-07 30.8 12.8 0.00011 22.1 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297527200|ref|YP_003669224.1| - 1.1e-06 29.2 9.6 1.8e-06 28.5 9.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297527200|ref|YP_003669224.1| - 1.5e-06 28.0 14.0 0.00014 21.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|297527200|ref|YP_003669224.1| - 3.7e-06 27.0 8.8 2.1e-05 24.6 9.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297527200|ref|YP_003669224.1| - 5.1e-06 27.3 2.9 0.009 16.9 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|297527200|ref|YP_003669224.1| - 7.8e-06 25.9 7.1 0.0015 18.6 9.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|297527200|ref|YP_003669224.1| - 0.00044 20.6 5.8 1.9 9.0 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|297527200|ref|YP_003669224.1| - 0.00082 19.7 10.4 0.061 13.8 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|297527200|ref|YP_003669224.1| - 0.0036 18.1 6.7 0.05 14.5 0.1 2.4 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|297527200|ref|YP_003669224.1| - 0.011 16.3 8.7 0.27 11.8 0.9 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|297527200|ref|YP_003669224.1| - 0.015 16.0 7.1 0.077 13.7 1.1 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Rieske_3 PF18465.1 gi|297527200|ref|YP_003669224.1| - 0.034 14.4 0.2 0.05 13.9 0.2 1.3 1 0 0 1 1 1 0 Rieske 3Fe-4S Fer4_13 PF13370.6 gi|297527200|ref|YP_003669224.1| - 0.51 10.9 11.8 0.31 11.6 1.7 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|297527200|ref|YP_003669224.1| - 0.82 10.7 18.2 0.7 11.0 5.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_5 PF01022.20 gi|297527201|ref|YP_003669225.1| - 3.1e-14 52.6 0.5 8.1e-14 51.2 0.5 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|297527201|ref|YP_003669225.1| - 3.1e-05 23.9 0.0 5.4e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Imm6 PF14434.6 gi|297527202|ref|YP_003669226.1| - 0.044 13.7 0.1 0.05 13.5 0.1 1.1 1 0 0 1 1 1 0 Immunity protein Imm6 Bromodomain PF00439.25 gi|297527202|ref|YP_003669226.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Bromodomain MCM PF00493.23 gi|297527203|ref|YP_003669227.1| - 2.8e-95 317.7 0.0 2.8e-64 216.3 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|297527203|ref|YP_003669227.1| - 1.8e-37 128.0 0.0 3.1e-37 127.2 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|297527203|ref|YP_003669227.1| - 2e-26 92.2 0.9 5.5e-26 90.8 0.9 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|297527203|ref|YP_003669227.1| - 4.7e-17 62.5 0.1 1.5e-16 60.8 0.1 1.9 1 0 0 1 1 1 1 MCM N-terminal domain Intein_splicing PF14890.6 gi|297527203|ref|YP_003669227.1| - 3.1e-16 59.6 1.0 9.9e-16 57.9 1.0 2.0 1 0 0 1 1 1 1 Intein splicing domain AAA_5 PF07728.14 gi|297527203|ref|YP_003669227.1| - 2.1e-06 27.8 0.0 5.8e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|297527203|ref|YP_003669227.1| - 0.04 13.6 0.0 0.17 11.6 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain Rrf2 PF02082.20 gi|297527203|ref|YP_003669227.1| - 0.069 13.5 0.0 23 5.4 0.0 2.9 2 0 0 2 2 2 0 Transcriptional regulator AAA_16 PF13191.6 gi|297527203|ref|YP_003669227.1| - 0.094 13.1 0.0 0.33 11.3 0.0 2.0 1 0 0 1 1 1 0 AAA ATPase domain Zn-ribbon_8 PF09723.10 gi|297527203|ref|YP_003669227.1| - 0.15 12.2 1.2 0.32 11.1 1.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Sld5 PF05916.11 gi|297527204|ref|YP_003669228.1| - 1.3e-09 38.5 1.5 1.7e-09 38.1 1.5 1.2 1 0 0 1 1 1 1 GINS complex protein SSL_OB PF09199.10 gi|297527204|ref|YP_003669228.1| - 0.058 13.7 0.0 0.097 13.0 0.0 1.4 1 0 0 1 1 1 0 Staphylococcal superantigen-like OB-fold domain DUF1947 PF09183.10 gi|297527204|ref|YP_003669228.1| - 3 8.2 9.1 0.59 10.5 0.9 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1947) Rep_fac_C PF08542.11 gi|297527205|ref|YP_003669229.1| - 1.2e-24 86.6 0.0 4.7e-24 84.6 0.0 2.1 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|297527205|ref|YP_003669229.1| - 1.6e-16 60.5 0.1 1.1e-11 44.8 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.29 gi|297527205|ref|YP_003669229.1| - 2.1e-16 60.6 0.0 4e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|297527205|ref|YP_003669229.1| - 6.1e-08 32.6 0.0 1.7e-07 31.1 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|297527205|ref|YP_003669229.1| - 3.4e-07 30.4 0.0 7.4e-07 29.3 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|297527205|ref|YP_003669229.1| - 6.1e-07 29.7 0.2 1.9e-06 28.1 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_3 PF07726.11 gi|297527205|ref|YP_003669229.1| - 1.6e-06 28.0 0.0 2.9e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.13 gi|297527205|ref|YP_003669229.1| - 2.1e-06 27.6 0.1 7.6e-06 25.8 0.1 1.8 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|297527205|ref|YP_003669229.1| - 3.4e-06 27.6 0.2 0.0014 19.1 0.0 2.7 2 2 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|297527205|ref|YP_003669229.1| - 5.4e-06 26.4 0.0 2.2e-05 24.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|297527205|ref|YP_003669229.1| - 6.8e-06 26.4 0.8 0.11 12.8 0.1 2.8 2 2 2 4 4 2 2 AAA domain AAA_14 PF13173.6 gi|297527205|ref|YP_003669229.1| - 1.7e-05 24.9 0.1 0.001 19.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|297527205|ref|YP_003669229.1| - 6.1e-05 23.6 0.1 0.00076 20.0 0.0 2.6 2 2 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|297527205|ref|YP_003669229.1| - 0.00017 21.0 0.1 0.0063 15.9 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|297527205|ref|YP_003669229.1| - 0.0019 17.6 0.1 0.25 10.7 0.0 2.5 1 1 0 2 2 2 1 Bacterial TniB protein IstB_IS21 PF01695.17 gi|297527205|ref|YP_003669229.1| - 0.0024 17.6 0.0 0.0058 16.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.16 gi|297527205|ref|YP_003669229.1| - 0.0024 17.3 0.1 0.31 10.5 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_33 PF13671.6 gi|297527205|ref|YP_003669229.1| - 0.0032 17.6 0.3 0.0096 16.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|297527205|ref|YP_003669229.1| - 0.004 17.0 0.0 0.012 15.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|297527205|ref|YP_003669229.1| - 0.0042 16.6 0.0 0.008 15.7 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 FtsK_SpoIIIE PF01580.18 gi|297527205|ref|YP_003669229.1| - 0.0044 16.4 0.0 0.018 14.4 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_7 PF12775.7 gi|297527205|ref|YP_003669229.1| - 0.0046 16.5 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|297527205|ref|YP_003669229.1| - 0.0048 16.6 1.3 0.047 13.4 1.3 2.5 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|297527205|ref|YP_003669229.1| - 0.0062 16.7 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|297527205|ref|YP_003669229.1| - 0.0064 16.4 0.0 0.012 15.5 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|297527205|ref|YP_003669229.1| - 0.0079 16.4 0.0 0.021 15.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|297527205|ref|YP_003669229.1| - 0.0084 15.2 0.0 0.056 12.5 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.15 gi|297527205|ref|YP_003669229.1| - 0.0092 16.0 0.0 0.034 14.2 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF815 PF05673.13 gi|297527205|ref|YP_003669229.1| - 0.01 15.0 0.0 0.018 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|297527205|ref|YP_003669229.1| - 0.012 15.4 0.0 0.039 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|297527205|ref|YP_003669229.1| - 0.017 14.8 0.0 0.83 9.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|297527205|ref|YP_003669229.1| - 0.019 14.6 1.1 0.078 12.5 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|297527205|ref|YP_003669229.1| - 0.037 14.4 0.3 0.25 11.7 0.2 2.3 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|297527205|ref|YP_003669229.1| - 0.04 14.3 0.0 0.077 13.4 0.0 1.6 1 1 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|297527205|ref|YP_003669229.1| - 0.043 13.7 0.0 0.65 9.9 0.0 2.3 1 1 1 2 2 2 0 NTPase Sigma54_activ_2 PF14532.6 gi|297527205|ref|YP_003669229.1| - 0.059 13.5 0.0 0.25 11.5 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|297527205|ref|YP_003669229.1| - 0.06 13.1 0.0 0.09 12.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Nse4-Nse3_bdg PF15412.6 gi|297527205|ref|YP_003669229.1| - 0.084 13.0 0.0 0.6 10.3 0.0 2.4 2 0 0 2 2 2 0 Binding domain of Nse4/EID3 to Nse3-MAGE NACHT PF05729.12 gi|297527205|ref|YP_003669229.1| - 0.091 12.7 0.0 0.32 10.9 0.0 1.9 1 1 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|297527206|ref|YP_003669230.1| - 3.3e-15 56.7 0.0 7.1e-15 55.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|297527206|ref|YP_003669230.1| - 1e-08 34.7 0.0 3.3e-08 33.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|297527206|ref|YP_003669230.1| - 6.4e-08 32.7 0.0 1.5e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|297527206|ref|YP_003669230.1| - 1.3e-07 31.6 0.0 2e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|297527206|ref|YP_003669230.1| - 1.3e-05 25.7 0.0 3.5e-05 24.3 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|297527206|ref|YP_003669230.1| - 1.6e-05 24.9 0.0 3.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|297527206|ref|YP_003669230.1| - 1.9e-05 24.7 0.0 3.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RFC1 PF08519.12 gi|297527206|ref|YP_003669230.1| - 6.8e-05 23.1 0.0 0.00011 22.4 0.0 1.3 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain ATPase_2 PF01637.18 gi|297527206|ref|YP_003669230.1| - 0.00027 20.9 0.0 0.0012 18.8 0.0 1.8 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|297527206|ref|YP_003669230.1| - 0.00029 20.7 0.0 0.00061 19.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial dnaA protein DNA_pol3_delta PF06144.13 gi|297527206|ref|YP_003669230.1| - 0.00051 19.9 0.3 0.0016 18.2 0.0 1.9 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_2 PF07724.14 gi|297527206|ref|YP_003669230.1| - 0.00052 20.2 0.0 0.00091 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_assoc_2 PF16193.5 gi|297527206|ref|YP_003669230.1| - 0.0012 19.1 0.2 0.0034 17.7 0.2 1.9 1 1 0 1 1 1 1 AAA C-terminal domain IstB_IS21 PF01695.17 gi|297527206|ref|YP_003669230.1| - 0.0021 17.8 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|297527206|ref|YP_003669230.1| - 0.0022 18.3 0.0 0.02 15.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|297527206|ref|YP_003669230.1| - 0.0049 16.2 0.0 0.0083 15.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Viral_helicase1 PF01443.18 gi|297527206|ref|YP_003669230.1| - 0.0061 16.3 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase PPV_E1_C PF00519.17 gi|297527206|ref|YP_003669230.1| - 0.0075 15.2 0.0 0.016 14.0 0.0 1.5 1 0 0 1 1 1 1 Papillomavirus helicase RNA_helicase PF00910.22 gi|297527206|ref|YP_003669230.1| - 0.0085 16.5 0.0 0.023 15.1 0.0 1.7 1 0 0 1 1 1 1 RNA helicase RsgA_GTPase PF03193.16 gi|297527206|ref|YP_003669230.1| - 0.021 14.7 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|297527206|ref|YP_003669230.1| - 0.022 14.7 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|297527206|ref|YP_003669230.1| - 0.036 13.6 0.0 0.091 12.3 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_17 PF13207.6 gi|297527206|ref|YP_003669230.1| - 0.058 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|297527206|ref|YP_003669230.1| - 0.061 13.8 0.0 0.37 11.3 0.0 2.0 1 1 1 2 2 2 0 ABC transporter AAA_25 PF13481.6 gi|297527206|ref|YP_003669230.1| - 0.061 12.9 0.2 0.15 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_6 PF12774.7 gi|297527206|ref|YP_003669230.1| - 0.082 11.9 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region TIP49 PF06068.13 gi|297527206|ref|YP_003669230.1| - 0.091 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain NB-ARC PF00931.22 gi|297527206|ref|YP_003669230.1| - 0.1 11.7 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|297527206|ref|YP_003669230.1| - 0.18 12.3 0.0 0.35 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|297527206|ref|YP_003669230.1| - 0.21 11.3 0.3 0.74 9.5 0.1 2.0 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|297527206|ref|YP_003669230.1| - 0.21 11.0 0.0 0.41 10.1 0.0 1.5 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain HTH_IclR PF09339.10 gi|297527207|ref|YP_003669231.1| - 0.0004 20.1 0.3 0.0025 17.6 0.3 2.0 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|297527207|ref|YP_003669231.1| - 0.00048 20.1 0.0 0.00059 19.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|297527207|ref|YP_003669231.1| - 0.0013 19.2 0.5 0.0014 19.1 0.5 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|297527207|ref|YP_003669231.1| - 0.0026 17.7 0.4 0.003 17.5 0.4 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HemN_C PF06969.16 gi|297527207|ref|YP_003669231.1| - 0.0029 17.6 0.5 0.0035 17.4 0.5 1.1 1 0 0 1 1 1 1 HemN C-terminal domain MarR_2 PF12802.7 gi|297527207|ref|YP_003669231.1| - 0.0032 17.3 0.2 0.0042 17.0 0.2 1.1 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|297527207|ref|YP_003669231.1| - 0.0052 16.8 0.1 0.0061 16.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|297527207|ref|YP_003669231.1| - 0.0063 16.8 0.0 0.0071 16.7 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 gi|297527207|ref|YP_003669231.1| - 0.0095 15.9 0.4 0.012 15.7 0.4 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_5 PF01022.20 gi|297527207|ref|YP_003669231.1| - 0.013 15.3 0.4 0.025 14.4 0.4 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF977 PF06163.11 gi|297527207|ref|YP_003669231.1| - 0.036 14.0 0.1 0.041 13.8 0.1 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) MarR PF01047.22 gi|297527207|ref|YP_003669231.1| - 0.045 13.7 0.1 0.061 13.3 0.1 1.1 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|297527207|ref|YP_003669231.1| - 0.062 13.2 0.2 0.073 13.0 0.2 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|297527207|ref|YP_003669231.1| - 0.11 12.1 3.7 1.5 8.4 3.7 2.2 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cdc6_C PF09079.11 gi|297527208|ref|YP_003669232.1| - 1.1e-19 70.2 0.0 4.8e-19 68.1 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|297527208|ref|YP_003669232.1| - 7.9e-14 52.1 0.0 1.6e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|297527208|ref|YP_003669232.1| - 1.3e-07 31.2 0.0 2.3e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 gi|297527208|ref|YP_003669232.1| - 1.1e-06 29.1 0.0 4.6e-06 27.1 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|297527208|ref|YP_003669232.1| - 0.0003 21.2 0.0 0.00058 20.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|297527208|ref|YP_003669232.1| - 0.0084 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|297527208|ref|YP_003669232.1| - 0.023 14.2 0.2 0.074 12.6 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF1191 PF06697.12 gi|297527209|ref|YP_003669233.1| - 0.02 14.7 0.0 0.023 14.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1191) TrkA_N PF02254.18 gi|297527210|ref|YP_003669234.1| - 1.9e-31 108.7 3.7 3.2e-31 108.0 3.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|297527210|ref|YP_003669234.1| - 8.9e-11 41.5 1.2 2.8e-09 36.7 0.0 3.1 3 0 0 3 3 3 1 TrkA-C domain F420_oxidored PF03807.17 gi|297527210|ref|YP_003669234.1| - 6.5e-07 29.9 1.1 0.00012 22.5 0.7 2.7 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|297527210|ref|YP_003669234.1| - 1.3e-05 25.2 0.2 2.1e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|297527210|ref|YP_003669234.1| - 4.5e-05 23.8 0.6 7.5e-05 23.1 0.6 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|297527210|ref|YP_003669234.1| - 0.00042 20.4 0.6 0.0011 19.0 0.3 2.0 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.27 gi|297527210|ref|YP_003669234.1| - 0.00046 20.7 0.3 0.001 19.6 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|297527210|ref|YP_003669234.1| - 0.0035 17.6 0.6 0.0071 16.6 0.6 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|297527210|ref|YP_003669234.1| - 0.0038 17.1 0.3 0.0052 16.7 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|297527210|ref|YP_003669234.1| - 0.0042 16.7 1.0 0.0063 16.1 1.0 1.2 1 0 0 1 1 1 1 NmrA-like family Pyr_redox_2 PF07992.14 gi|297527210|ref|YP_003669234.1| - 0.0058 15.9 0.3 0.0078 15.5 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase LpxI_N PF17930.1 gi|297527210|ref|YP_003669234.1| - 0.0092 15.9 0.4 0.03 14.2 0.2 1.9 1 1 1 2 2 2 1 LpxI N-terminal domain Rossmann-like PF10727.9 gi|297527210|ref|YP_003669234.1| - 0.012 15.5 0.3 0.082 12.8 0.1 2.1 1 1 0 2 2 2 0 Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|297527210|ref|YP_003669234.1| - 0.024 14.6 0.1 0.056 13.4 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.25 gi|297527210|ref|YP_003669234.1| - 0.028 13.9 0.3 0.043 13.3 0.3 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Plasmod_dom_1 PF09715.10 gi|297527210|ref|YP_003669234.1| - 0.037 14.1 0.5 0.076 13.1 0.5 1.4 1 0 0 1 1 1 0 Plasmodium protein of unknown function (Plasmod_dom_1) NAD_binding_2 PF03446.15 gi|297527210|ref|YP_003669234.1| - 0.044 14.0 0.1 0.073 13.2 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|297527210|ref|YP_003669234.1| - 0.074 12.7 0.2 0.29 10.8 0.2 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|297527210|ref|YP_003669234.1| - 0.11 11.7 0.1 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|297527210|ref|YP_003669234.1| - 0.14 11.6 0.1 0.18 11.2 0.1 1.1 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PI3K_p85B PF02192.16 gi|297527211|ref|YP_003669235.1| - 0.083 12.6 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 PI3-kinase family, p85-binding domain OrfB_Zn_ribbon PF07282.11 gi|297527212|ref|YP_003669236.1| - 8.7e-23 80.0 0.0 2.1e-22 78.8 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|297527212|ref|YP_003669236.1| - 0.00025 21.2 2.2 0.00025 21.2 2.2 2.1 2 0 0 2 2 2 1 Probable transposase DUF2540 PF10802.8 gi|297527212|ref|YP_003669236.1| - 0.29 11.2 3.5 6.5 6.9 1.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2540) VWA PF00092.28 gi|297527214|ref|YP_003669238.1| - 0.043 14.1 0.0 0.044 14.0 0.0 1.3 1 1 0 1 1 1 0 von Willebrand factor type A domain VWA PF00092.28 gi|297527215|ref|YP_003669239.1| - 2e-14 54.2 0.2 2.4e-14 54.0 0.2 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|297527215|ref|YP_003669239.1| - 7.7e-12 45.8 0.0 1.3e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain RHH_1 PF01402.21 gi|297527216|ref|YP_003669240.1| - 6.1e-05 22.8 1.2 0.00021 21.1 1.2 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|297527216|ref|YP_003669240.1| - 0.038 14.2 0.2 0.1 12.8 0.1 1.8 2 0 0 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family UPF0175 PF03683.13 gi|297527216|ref|YP_003669240.1| - 0.081 12.6 0.1 0.2 11.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) DUF5388 PF17363.2 gi|297527216|ref|YP_003669240.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5388) Peptidase_S8 PF00082.22 gi|297527217|ref|YP_003669241.1| - 2.6e-27 95.9 0.0 5.6e-27 94.8 0.0 1.6 1 1 0 1 1 1 1 Subtilase family BACON PF13004.7 gi|297527217|ref|YP_003669241.1| - 0.00082 19.3 1.2 0.003 17.5 0.2 2.6 2 0 0 2 2 2 1 Putative binding domain, N-terminal DUF4625 PF15418.6 gi|297527217|ref|YP_003669241.1| - 0.0036 17.5 0.0 0.6 10.3 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4625) VCBS PF13517.6 gi|297527217|ref|YP_003669241.1| - 0.15 12.6 6.1 1.4 9.5 2.7 3.7 3 0 0 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Baculo_PEP_C PF04513.12 gi|297527218|ref|YP_003669242.1| - 6.4e-07 29.5 26.8 1.4e-05 25.2 2.8 3.3 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4349 PF14257.6 gi|297527218|ref|YP_003669242.1| - 0.0032 17.0 0.1 0.077 12.4 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4349) Laminin_II PF06009.12 gi|297527218|ref|YP_003669242.1| - 0.0064 16.5 5.3 0.037 14.0 0.5 3.0 1 1 2 3 3 3 1 Laminin Domain II ApoLp-III PF07464.11 gi|297527218|ref|YP_003669242.1| - 0.03 14.4 0.9 0.36 10.9 0.1 2.3 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF1664 PF07889.12 gi|297527218|ref|YP_003669242.1| - 0.054 13.5 9.7 2.6 8.1 0.2 4.3 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) DUF5082 PF16888.5 gi|297527218|ref|YP_003669242.1| - 0.06 13.6 1.1 0.71 10.2 0.1 2.7 2 1 0 3 3 3 0 Domain of unknown function (DUF5082) SF-assemblin PF06705.11 gi|297527218|ref|YP_003669242.1| - 0.064 12.6 0.7 0.22 10.9 0.0 2.0 1 1 1 2 2 2 0 SF-assemblin/beta giardin TrbL PF04610.14 gi|297527218|ref|YP_003669242.1| - 0.068 12.9 0.2 0.068 12.9 0.2 2.0 2 0 0 2 2 1 0 TrbL/VirB6 plasmid conjugal transfer protein IFT57 PF10498.9 gi|297527218|ref|YP_003669242.1| - 0.093 11.7 0.0 1 8.2 0.0 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Apolipoprotein PF01442.18 gi|297527218|ref|YP_003669242.1| - 0.15 11.9 0.0 1.2 8.9 0.0 2.0 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain DUF347 PF03988.12 gi|297527218|ref|YP_003669242.1| - 0.18 12.0 0.1 0.18 12.0 0.1 3.0 4 0 0 4 4 3 0 Repeat of Unknown Function (DUF347) Fib_alpha PF08702.10 gi|297527218|ref|YP_003669242.1| - 0.25 11.5 1.7 6.3 7.0 0.0 2.8 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF948 PF06103.11 gi|297527218|ref|YP_003669242.1| - 0.27 11.5 10.6 9.1 6.6 2.8 3.9 1 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|297527218|ref|YP_003669242.1| - 0.29 11.6 18.2 9.3 6.8 0.2 4.9 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein AIP3 PF03915.13 gi|297527218|ref|YP_003669242.1| - 0.31 10.1 1.2 0.67 9.0 0.8 1.4 1 1 0 1 1 1 0 Actin interacting protein 3 Big_3_5 PF16640.5 gi|297527218|ref|YP_003669242.1| - 0.38 11.0 7.2 0.12 12.6 0.4 3.8 3 1 1 4 4 4 0 Bacterial Ig-like domain (group 3) Allexi_40kDa PF05549.11 gi|297527218|ref|YP_003669242.1| - 0.39 10.2 2.0 0.97 8.9 0.3 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein HSBP1 PF06825.12 gi|297527218|ref|YP_003669242.1| - 0.55 10.1 16.1 2.8 7.9 1.6 4.7 5 1 1 6 6 6 0 Heat shock factor binding protein 1 FlaC_arch PF05377.11 gi|297527218|ref|YP_003669242.1| - 3.3 8.2 5.3 93 3.5 0.1 4.1 3 2 1 4 4 3 0 Flagella accessory protein C (FlaC) Ribosomal_S25 PF03297.15 gi|297527222|ref|YP_003669246.1| - 3.4e-08 33.6 0.0 3.9e-08 33.4 0.0 1.0 1 0 0 1 1 1 1 S25 ribosomal protein DUF1614 PF07758.11 gi|297527223|ref|YP_003669247.1| - 3.6e-43 147.5 18.3 5.1e-43 147.0 18.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) G_glu_transpept PF01019.21 gi|297527224|ref|YP_003669248.1| - 1.2e-93 314.6 0.0 1.4e-93 314.4 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase TauE PF01925.19 gi|297527225|ref|YP_003669249.1| - 1.4e-47 162.3 30.3 1.6e-47 162.1 30.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Aldo_ket_red PF00248.21 gi|297527226|ref|YP_003669250.1| - 1.2e-55 188.8 0.4 1.9e-53 181.6 0.4 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family RHH_8 PF17723.1 gi|297527226|ref|YP_003669250.1| - 0.021 15.0 0.1 0.05 13.8 0.1 1.6 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family VWA_2 PF13519.6 gi|297527228|ref|YP_003669252.1| - 1.6e-11 44.8 0.0 3.6e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|297527228|ref|YP_003669252.1| - 1.3e-08 35.2 0.0 3e-08 34.1 0.0 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|297527228|ref|YP_003669252.1| - 0.0095 15.3 0.0 0.46 9.8 0.0 2.2 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|297527228|ref|YP_003669252.1| - 0.084 12.8 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 von Willebrand factor type A domain BIV_Env PF05858.12 gi|297527228|ref|YP_003669252.1| - 0.14 10.3 0.4 0.17 10.0 0.4 1.1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) Stevor PF17410.2 gi|297527228|ref|YP_003669252.1| - 1.2 8.6 7.1 0.36 10.3 3.6 1.8 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame VWA PF00092.28 gi|297527229|ref|YP_003669253.1| - 6e-16 59.2 0.0 9.3e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|297527229|ref|YP_003669253.1| - 8.6e-16 58.5 0.0 1.7e-15 57.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.9 gi|297527229|ref|YP_003669253.1| - 0.0073 16.4 0.0 0.024 14.8 0.0 1.8 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.14 gi|297527229|ref|YP_003669253.1| - 0.044 13.2 0.0 0.068 12.6 0.0 1.4 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein CobT_C PF11775.8 gi|297527229|ref|YP_003669253.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain AAA_3 PF07726.11 gi|297527233|ref|YP_003669257.1| - 9.3e-55 184.0 0.2 5.8e-53 178.2 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|297527233|ref|YP_003669257.1| - 1.7e-14 53.4 0.1 5.8e-14 51.7 0.0 1.8 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|297527233|ref|YP_003669257.1| - 1.2e-12 48.0 0.0 3.4e-12 46.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|297527233|ref|YP_003669257.1| - 7.3e-05 23.2 0.0 0.00039 20.9 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|297527233|ref|YP_003669257.1| - 0.00045 20.0 0.0 0.002 17.8 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|297527233|ref|YP_003669257.1| - 0.0021 17.5 0.0 0.39 10.1 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|297527233|ref|YP_003669257.1| - 0.0031 17.3 0.0 0.075 12.8 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|297527233|ref|YP_003669257.1| - 0.038 14.4 0.0 0.096 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain MCM PF00493.23 gi|297527233|ref|YP_003669257.1| - 0.091 11.8 0.0 13 4.8 0.0 2.3 2 0 0 2 2 2 0 MCM P-loop domain TsaE PF02367.17 gi|297527233|ref|YP_003669257.1| - 0.17 11.9 0.1 1.1 9.3 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRC PF05239.16 gi|297527234|ref|YP_003669258.1| - 1.1 9.4 7.5 1.8 8.7 0.4 3.5 3 1 0 3 3 3 0 PRC-barrel domain DUF58 PF01882.18 gi|297527235|ref|YP_003669259.1| - 8.2e-14 51.7 0.0 1.4e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 ATPase PF06745.13 gi|297527237|ref|YP_003669261.1| - 3.4e-28 98.6 2.8 2.9e-24 85.7 0.2 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|297527237|ref|YP_003669261.1| - 2.7e-07 30.3 0.0 7.7e-06 25.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|297527237|ref|YP_003669261.1| - 3.5e-06 26.6 0.0 1.1e-05 25.0 0.0 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|297527237|ref|YP_003669261.1| - 7.1e-06 25.9 0.1 0.00055 19.7 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|297527237|ref|YP_003669261.1| - 1.3e-05 25.3 0.2 0.15 12.1 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.6 gi|297527237|ref|YP_003669261.1| - 6.1e-05 22.8 0.2 0.0027 17.5 0.1 3.2 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|297527237|ref|YP_003669261.1| - 0.00037 20.2 4.3 0.03 14.1 0.6 3.3 3 0 0 3 3 3 1 P-loop containing region of AAA domain TsaE PF02367.17 gi|297527237|ref|YP_003669261.1| - 0.00042 20.3 0.4 0.73 9.8 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|297527237|ref|YP_003669261.1| - 0.00084 19.6 0.0 0.061 13.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|297527237|ref|YP_003669261.1| - 0.0011 19.5 0.1 0.15 12.5 0.0 2.5 2 0 0 2 2 2 1 ABC transporter DUF2075 PF09848.9 gi|297527237|ref|YP_003669261.1| - 0.002 17.5 0.0 0.013 14.8 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|297527237|ref|YP_003669261.1| - 0.002 18.0 0.1 0.57 10.1 0.0 2.5 2 0 0 2 2 2 1 NACHT domain ArsA_ATPase PF02374.15 gi|297527237|ref|YP_003669261.1| - 0.0052 16.0 0.0 0.0092 15.2 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_16 PF13191.6 gi|297527237|ref|YP_003669261.1| - 0.0084 16.5 0.3 1.5 9.2 0.1 2.4 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.22 gi|297527237|ref|YP_003669261.1| - 0.0093 15.6 0.0 0.48 10.0 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|297527237|ref|YP_003669261.1| - 0.013 15.4 0.3 3.9 7.3 0.1 2.8 2 0 0 2 2 2 0 RsgA GTPase AAA_19 PF13245.6 gi|297527237|ref|YP_003669261.1| - 0.014 15.8 0.1 3.8 7.8 0.0 2.8 3 0 0 3 3 2 0 AAA domain T2SSE PF00437.20 gi|297527237|ref|YP_003669261.1| - 0.015 14.4 0.9 0.95 8.5 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|297527237|ref|YP_003669261.1| - 0.016 15.2 0.4 0.43 10.5 0.0 2.8 2 1 0 2 2 2 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|297527237|ref|YP_003669261.1| - 0.018 14.3 0.1 2.7 7.2 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin AAA_7 PF12775.7 gi|297527237|ref|YP_003669261.1| - 0.018 14.5 0.2 0.49 9.9 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region cobW PF02492.19 gi|297527237|ref|YP_003669261.1| - 0.03 13.9 3.7 3.2 7.3 0.5 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GvpD PF07088.11 gi|297527237|ref|YP_003669261.1| - 0.033 12.8 0.3 0.42 9.2 0.3 2.3 1 1 0 1 1 1 0 GvpD gas vesicle protein AAA_31 PF13614.6 gi|297527237|ref|YP_003669261.1| - 0.035 14.0 0.4 1.1 9.1 0.1 2.6 2 1 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|297527237|ref|YP_003669261.1| - 0.037 14.1 0.4 0.095 12.8 0.4 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activat PF00158.26 gi|297527237|ref|YP_003669261.1| - 0.044 13.5 0.1 1.5 8.5 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain PRK PF00485.18 gi|297527237|ref|YP_003669261.1| - 0.048 13.4 0.3 0.2 11.4 0.0 2.1 2 1 1 3 3 3 0 Phosphoribulokinase / Uridine kinase family ResIII PF04851.15 gi|297527237|ref|YP_003669261.1| - 0.074 13.1 0.1 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.18 gi|297527237|ref|YP_003669261.1| - 0.098 12.5 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein MeaB PF03308.16 gi|297527237|ref|YP_003669261.1| - 0.15 11.0 0.1 12 4.7 0.0 2.6 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|297527237|ref|YP_003669261.1| - 0.19 11.6 0.1 1.5 8.7 0.0 2.4 3 0 0 3 3 3 0 Adenylylsulphate kinase CTP-dep_RFKase PF01982.16 gi|297527238|ref|YP_003669262.1| - 5.8e-29 100.6 0.1 6.9e-29 100.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 AFOR_C PF01314.18 gi|297527239|ref|YP_003669263.1| - 8e-114 380.6 0.2 9.4e-114 380.4 0.2 1.0 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|297527239|ref|YP_003669263.1| - 4.2e-76 255.2 0.0 6.2e-76 254.7 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SAM_adeno_trans PF01887.16 gi|297527242|ref|YP_003669266.1| - 1.4e-79 266.9 0.0 1.5e-79 266.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase PDDEXK_1 PF12705.7 gi|297527243|ref|YP_003669267.1| - 5.9e-07 29.7 10.9 0.0003 20.8 6.8 3.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|297527243|ref|YP_003669267.1| - 2.2e-06 28.0 0.4 3.9e-06 27.2 0.4 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3799 PF12684.7 gi|297527243|ref|YP_003669267.1| - 0.0002 21.2 0.1 0.024 14.4 0.0 2.6 1 1 2 3 3 3 2 PDDEXK-like domain of unknown function (DUF3799) Csa1 PF06023.12 gi|297527243|ref|YP_003669267.1| - 0.048 13.0 0.5 0.1 12.0 0.5 1.6 1 1 0 1 1 1 0 CRISPR-associated exonuclease Csa1 Dna2 PF08696.11 gi|297527243|ref|YP_003669267.1| - 0.057 13.2 0.0 0.29 10.9 0.0 2.0 1 1 1 2 2 2 0 DNA replication factor Dna2 KIAA1328 PF15369.6 gi|297527243|ref|YP_003669267.1| - 0.23 11.3 1.5 0.37 10.6 1.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein KIAA1328 NUDIX PF00293.28 gi|297527244|ref|YP_003669268.1| - 5.4e-20 71.8 0.0 6.5e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain CYTH PF01928.21 gi|297527245|ref|YP_003669269.1| - 1.7e-25 90.0 1.6 2.4e-25 89.5 1.6 1.1 1 0 0 1 1 1 1 CYTH domain DUF4479 PF14794.6 gi|297527245|ref|YP_003669269.1| - 0.032 14.1 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Hist_deacetyl PF00850.19 gi|297527246|ref|YP_003669270.1| - 7.2e-65 219.5 0.0 9.9e-65 219.0 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain DHH PF01368.20 gi|297527247|ref|YP_003669271.1| - 0.0056 16.9 0.0 0.018 15.3 0.0 1.8 1 1 0 1 1 1 1 DHH family ChitinaseA_N PF08329.10 gi|297527249|ref|YP_003669273.1| - 0.037 13.7 0.1 1.8 8.2 0.1 2.1 2 0 0 2 2 2 0 Chitinase A, N-terminal domain DUF5643 PF18705.1 gi|297527249|ref|YP_003669273.1| - 0.059 13.3 0.4 0.059 13.3 0.4 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5643) Ig_GlcNase PF18368.1 gi|297527249|ref|YP_003669273.1| - 0.08 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain Mannosidase_ig PF17786.1 gi|297527249|ref|YP_003669273.1| - 0.1 13.2 0.0 0.23 12.1 0.0 1.6 1 0 0 1 1 1 0 Mannosidase Ig/CBM-like domain NurA PF09376.10 gi|297527250|ref|YP_003669274.1| - 1.3e-08 34.8 0.8 2.2e-08 34.1 0.8 1.4 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|297527251|ref|YP_003669275.1| - 3.3e-12 47.0 0.1 2.7e-11 44.0 0.0 2.4 2 1 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|297527251|ref|YP_003669275.1| - 1.2e-08 34.7 0.1 1.8e-07 30.8 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.29 gi|297527251|ref|YP_003669275.1| - 1.2e-06 28.9 0.2 0.005 17.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|297527251|ref|YP_003669275.1| - 9.2e-06 26.0 0.0 0.013 15.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.9 gi|297527251|ref|YP_003669275.1| - 3.4e-05 22.9 0.0 8.6e-05 21.6 0.0 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 gi|297527251|ref|YP_003669275.1| - 3.5e-05 23.7 0.0 0.32 10.7 0.0 3.2 3 0 0 3 3 3 2 DEAD/DEAH box helicase DUF853 PF05872.12 gi|297527251|ref|YP_003669275.1| - 3.8e-05 22.5 0.0 0.11 11.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_18 PF13238.6 gi|297527251|ref|YP_003669275.1| - 0.002 18.7 0.0 0.013 16.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|297527251|ref|YP_003669275.1| - 0.0027 17.7 0.1 2.3 8.2 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|297527251|ref|YP_003669275.1| - 0.003 16.6 0.1 0.0074 15.4 0.1 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein Zot PF05707.12 gi|297527251|ref|YP_003669275.1| - 0.0035 17.0 0.4 0.0084 15.8 0.0 1.8 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) ATPase_2 PF01637.18 gi|297527251|ref|YP_003669275.1| - 0.0054 16.7 0.1 0.55 10.1 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|297527251|ref|YP_003669275.1| - 0.0056 17.1 0.0 0.22 11.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.7 gi|297527251|ref|YP_003669275.1| - 0.0096 14.9 0.0 2.1 7.2 0.0 2.5 2 1 0 2 2 2 1 AAA-like domain AAA_14 PF13173.6 gi|297527251|ref|YP_003669275.1| - 0.014 15.4 0.1 0.75 9.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|297527251|ref|YP_003669275.1| - 0.021 14.1 0.0 0.62 9.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|297527251|ref|YP_003669275.1| - 0.021 15.1 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|297527251|ref|YP_003669275.1| - 0.025 14.3 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|297527251|ref|YP_003669275.1| - 0.028 14.9 0.0 0.085 13.4 0.0 1.7 2 0 0 2 2 1 0 ABC transporter NACHT PF05729.12 gi|297527251|ref|YP_003669275.1| - 0.029 14.3 0.0 0.074 13.0 0.0 1.6 2 0 0 2 2 1 0 NACHT domain AAA_7 PF12775.7 gi|297527251|ref|YP_003669275.1| - 0.034 13.6 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Pox_A32 PF04665.12 gi|297527251|ref|YP_003669275.1| - 0.046 13.2 0.2 0.099 12.1 0.2 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_19 PF13245.6 gi|297527251|ref|YP_003669275.1| - 0.046 14.1 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|297527251|ref|YP_003669275.1| - 0.063 12.4 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA_5 PF07728.14 gi|297527251|ref|YP_003669275.1| - 0.07 13.1 0.1 0.2 11.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Rib_5-P_isom_A PF06026.14 gi|297527251|ref|YP_003669275.1| - 0.08 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TsaE PF02367.17 gi|297527251|ref|YP_003669275.1| - 0.11 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|297527251|ref|YP_003669275.1| - 0.13 11.9 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UvrD-helicase PF00580.21 gi|297527251|ref|YP_003669275.1| - 0.13 11.7 0.4 1.1 8.8 0.0 2.1 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain MobB PF03205.14 gi|297527251|ref|YP_003669275.1| - 0.17 11.7 0.1 0.39 10.6 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|297527251|ref|YP_003669275.1| - 0.18 12.0 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain PAC4 PF16093.5 gi|297527251|ref|YP_003669275.1| - 0.2 11.9 0.0 0.47 10.7 0.0 1.6 1 0 0 1 1 1 0 Proteasome assembly chaperone 4 AAA_30 PF13604.6 gi|297527251|ref|YP_003669275.1| - 0.23 11.2 0.0 2.2 7.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain CDP-OH_P_transf PF01066.21 gi|297527252|ref|YP_003669276.1| - 1.1e-12 48.6 2.2 1.1e-12 48.6 2.2 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase KaiA PF07688.12 gi|297527254|ref|YP_003669278.1| - 0.036 14.2 0.4 0.12 12.5 0.4 1.9 1 0 0 1 1 1 0 KaiA C-terminal domain LRR_2 PF07723.13 gi|297527254|ref|YP_003669278.1| - 3.4 8.5 5.8 72 4.3 0.0 4.1 4 0 0 4 4 4 0 Leucine Rich Repeat HTH_24 PF13412.6 gi|297527256|ref|YP_003669280.1| - 0.0034 16.9 4.3 0.0044 16.6 0.0 3.3 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding AIG1 PF04548.16 gi|297527256|ref|YP_003669280.1| - 0.031 13.6 0.0 0.077 12.3 0.0 1.7 1 0 0 1 1 1 0 AIG1 family IF2_N PF04760.15 gi|297527256|ref|YP_003669280.1| - 0.067 13.0 0.4 1.2 9.0 0.1 3.1 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_10 PF04967.12 gi|297527256|ref|YP_003669280.1| - 0.082 12.7 0.2 6.6 6.6 0.0 2.7 2 0 0 2 2 2 0 HTH DNA binding domain SpoU_sub_bind PF08032.12 gi|297527256|ref|YP_003669280.1| - 0.13 12.5 0.1 3.7 7.9 0.0 2.9 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding HSR PF03172.13 gi|297527256|ref|YP_003669280.1| - 0.18 11.9 4.8 0.25 11.5 0.8 3.0 2 1 1 3 3 3 0 HSR domain Tantalus PF15386.6 gi|297527256|ref|YP_003669280.1| - 3 8.0 9.9 0.12 12.5 1.0 3.0 3 0 0 3 3 3 0 Drosophila Tantalus-like NUDIX PF00293.28 gi|297527257|ref|YP_003669281.1| - 4.2e-15 56.0 0.0 5.6e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain ATP-synt_D PF01813.17 gi|297527260|ref|YP_003669284.1| - 1.7e-41 142.2 10.3 2e-41 142.0 10.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF3964 PF13107.6 gi|297527260|ref|YP_003669284.1| - 0.046 14.1 1.5 8.7 6.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3964) DUF61 PF01886.16 gi|297527261|ref|YP_003669285.1| - 2.2e-35 121.5 0.6 2.5e-35 121.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DivIVA PF05103.13 gi|297527262|ref|YP_003669286.1| - 3.5e-06 27.1 10.1 0.0062 16.6 4.1 2.1 2 0 0 2 2 2 2 DivIVA protein V-ATPase_G_2 PF16999.5 gi|297527262|ref|YP_003669286.1| - 2.9e-05 24.4 8.0 0.00039 20.8 3.1 2.3 2 0 0 2 2 2 1 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.8 gi|297527262|ref|YP_003669286.1| - 6.1e-05 22.5 10.7 0.00072 19.0 4.8 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF3552) ATP-synt_B PF00430.18 gi|297527262|ref|YP_003669286.1| - 0.00035 20.7 10.8 0.0037 17.4 5.4 2.0 2 0 0 2 2 2 1 ATP synthase B/B' CF(0) SpoU_sub_bind PF08032.12 gi|297527262|ref|YP_003669286.1| - 0.0089 16.3 4.3 0.17 12.2 1.1 2.2 2 0 0 2 2 2 1 RNA 2'-O ribose methyltransferase substrate binding HrpE PF06188.12 gi|297527262|ref|YP_003669286.1| - 0.011 15.7 1.4 0.02 14.8 1.2 1.5 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E Peptidase_M41 PF01434.18 gi|297527262|ref|YP_003669286.1| - 0.018 14.9 9.2 0.23 11.3 0.4 2.0 1 1 1 2 2 2 0 Peptidase family M41 DUF883 PF05957.13 gi|297527262|ref|YP_003669286.1| - 0.034 14.7 3.2 2.3 8.9 0.7 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) CENP-F_N PF10481.9 gi|297527262|ref|YP_003669286.1| - 0.042 13.5 7.4 0.05 13.2 7.4 1.0 1 0 0 1 1 1 0 Cenp-F N-terminal domain SLS PF14611.6 gi|297527262|ref|YP_003669286.1| - 0.077 12.8 3.1 0.089 12.6 3.1 1.1 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator vATP-synt_E PF01991.18 gi|297527262|ref|YP_003669286.1| - 0.084 12.3 17.7 0.07 12.5 10.5 2.1 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit DUF948 PF06103.11 gi|297527262|ref|YP_003669286.1| - 0.12 12.6 3.2 5.4 7.4 0.9 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Phage_min_cap2 PF06152.11 gi|297527262|ref|YP_003669286.1| - 0.19 10.6 4.7 0.21 10.5 4.7 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 RbsD_FucU PF05025.13 gi|297527262|ref|YP_003669286.1| - 0.27 11.7 5.1 0.21 12.0 3.1 1.6 1 1 1 2 2 2 0 RbsD / FucU transport protein family ERM PF00769.19 gi|297527262|ref|YP_003669286.1| - 0.3 10.9 11.0 0.36 10.6 11.0 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family V-ATPase_G PF03179.15 gi|297527262|ref|YP_003669286.1| - 0.31 11.6 16.1 0.79 10.3 16.1 1.7 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit RNase_J_C PF17770.1 gi|297527262|ref|YP_003669286.1| - 0.31 12.1 8.7 2 9.5 3.6 2.2 2 0 0 2 2 2 0 Ribonuclease J C-terminal domain DUF2452 PF10504.9 gi|297527262|ref|YP_003669286.1| - 0.38 10.2 2.9 6 6.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2452) PIN_12 PF16289.5 gi|297527262|ref|YP_003669286.1| - 0.63 10.5 9.8 0.84 10.1 9.8 1.1 1 0 0 1 1 1 0 PIN domain VGCC_beta4Aa_N PF12052.8 gi|297527262|ref|YP_003669286.1| - 1.1 9.5 5.6 1.1 9.5 2.0 2.2 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal DUF5339 PF17274.2 gi|297527262|ref|YP_003669286.1| - 1.2 10.0 6.3 5.1 8.0 2.9 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5339) zf-C4H2 PF10146.9 gi|297527262|ref|YP_003669286.1| - 1.2 9.4 11.4 2.4 8.4 11.4 1.5 1 1 0 1 1 1 0 Zinc finger-containing protein DCB PF16213.5 gi|297527262|ref|YP_003669286.1| - 1.7 8.3 9.5 4.3 7.0 2.4 2.0 1 1 1 2 2 2 0 Dimerisation and cyclophilin-binding domain of Mon2 YgaB PF14182.6 gi|297527262|ref|YP_003669286.1| - 4.5 7.7 9.7 0.89 10.0 4.1 2.0 2 0 0 2 2 2 0 YgaB-like protein FumaraseC_C PF10415.9 gi|297527262|ref|YP_003669286.1| - 6.5 7.2 8.0 1.4 9.4 4.5 1.7 2 0 0 2 2 1 0 Fumarase C C-terminus DctP PF03480.13 gi|297527262|ref|YP_003669286.1| - 8.3 5.6 8.8 2.8 7.2 3.9 1.9 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 V_ATPase_I PF01496.19 gi|297527263|ref|YP_003669287.1| - 3.3e-29 101.4 9.3 1.5e-16 59.6 0.2 3.3 3 1 0 3 3 3 3 V-type ATPase 116kDa subunit family DUF948 PF06103.11 gi|297527263|ref|YP_003669287.1| - 0.012 15.9 3.0 1.5 9.1 0.8 3.7 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) BAG6 PF12057.8 gi|297527263|ref|YP_003669287.1| - 0.092 12.4 0.1 0.23 11.1 0.1 1.6 1 0 0 1 1 1 0 BCL2-associated athanogene 6 Baculo_PEP_C PF04513.12 gi|297527263|ref|YP_003669287.1| - 0.21 11.6 6.2 0.7 9.9 1.6 2.4 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Death PF00531.22 gi|297527263|ref|YP_003669287.1| - 0.22 11.7 0.3 2.6 8.3 0.1 2.3 2 0 0 2 2 2 0 Death domain NPV_P10 PF05531.12 gi|297527263|ref|YP_003669287.1| - 0.28 11.7 6.4 8.9 6.9 3.5 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein PLU-1 PF08429.11 gi|297527263|ref|YP_003669287.1| - 0.3 10.2 3.0 0.19 10.8 0.5 1.7 2 0 0 2 2 2 0 PLU-1-like protein UPF0449 PF15136.6 gi|297527263|ref|YP_003669287.1| - 1.8 9.1 3.2 48 4.5 0.1 3.0 2 1 1 3 3 3 0 Uncharacterised protein family UPF0449 DUF1664 PF07889.12 gi|297527263|ref|YP_003669287.1| - 2.3 8.3 12.3 0.15 12.1 1.6 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|297527263|ref|YP_003669287.1| - 2.3 8.2 7.1 6.3 6.8 2.3 2.5 2 1 0 2 2 2 0 Laminin Domain II BLOC1_2 PF10046.9 gi|297527263|ref|YP_003669287.1| - 4.4 7.7 11.6 4 7.8 0.9 3.2 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF5082 PF16888.5 gi|297527263|ref|YP_003669287.1| - 9.2 6.6 13.5 3.3 8.0 1.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF5082) ATP-synt_C PF00137.21 gi|297527264|ref|YP_003669288.1| - 4.7e-18 65.3 23.5 2.2e-11 43.9 7.1 2.3 2 0 0 2 2 2 2 ATP synthase subunit C vATP-synt_E PF01991.18 gi|297527265|ref|YP_003669289.1| - 2.5e-18 66.2 18.5 3.2e-18 65.8 18.5 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|297527265|ref|YP_003669289.1| - 4.3e-05 23.9 24.4 0.00078 19.8 9.1 3.1 2 1 1 3 3 3 2 Vacuolar (H+)-ATPase G subunit FliH PF02108.16 gi|297527265|ref|YP_003669289.1| - 0.00019 21.5 5.7 0.0016 18.5 0.0 2.3 1 1 0 2 2 2 1 Flagellar assembly protein FliH DivIVA PF05103.13 gi|297527265|ref|YP_003669289.1| - 0.0002 21.4 15.4 0.02 15.0 5.0 2.5 1 1 1 2 2 2 2 DivIVA protein ATP-synt_B PF00430.18 gi|297527265|ref|YP_003669289.1| - 0.00022 21.3 22.7 0.0038 17.3 11.5 2.9 2 1 1 3 3 3 2 ATP synthase B/B' CF(0) HrpE PF06188.12 gi|297527265|ref|YP_003669289.1| - 0.043 13.7 7.8 0.31 10.9 7.8 2.1 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF4830 PF16112.5 gi|297527265|ref|YP_003669289.1| - 0.1 13.0 0.3 0.2 12.1 0.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4830) DUF1068 PF06364.12 gi|297527265|ref|YP_003669289.1| - 0.14 12.0 5.1 0.28 11.0 5.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1068) RTT107_BRCT_6 PF16771.5 gi|297527265|ref|YP_003669289.1| - 1.3 9.2 8.3 0.69 10.1 0.9 2.8 1 1 2 3 3 3 0 Regulator of Ty1 transposition protein 107 BRCT domain CRF PF00473.17 gi|297527265|ref|YP_003669289.1| - 5.5 7.2 7.5 15 5.8 0.1 3.4 3 0 0 3 3 3 0 Corticotropin-releasing factor family GRIP PF01465.20 gi|297527266|ref|YP_003669290.1| - 0.071 13.0 3.1 0.59 10.1 1.3 2.5 2 0 0 2 2 2 0 GRIP domain DpnII PF04556.12 gi|297527267|ref|YP_003669291.1| - 0.028 13.7 0.2 0.033 13.5 0.2 1.1 1 0 0 1 1 1 0 DpnII restriction endonuclease AF2331-like PF14556.6 gi|297527267|ref|YP_003669291.1| - 0.03 14.9 0.1 0.043 14.4 0.1 1.3 1 0 0 1 1 1 0 AF2331-like ATP-synt_F PF01990.17 gi|297527267|ref|YP_003669291.1| - 0.031 14.6 0.0 0.038 14.3 0.0 1.1 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit ANF_receptor PF01094.28 gi|297527267|ref|YP_003669291.1| - 0.065 12.3 0.0 0.078 12.1 0.0 1.0 1 0 0 1 1 1 0 Receptor family ligand binding region ATP-synt_ab PF00006.25 gi|297527268|ref|YP_003669292.1| - 1.2e-86 289.7 0.0 1.7e-86 289.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|297527268|ref|YP_003669292.1| - 6.4e-42 142.2 0.2 1.3e-41 141.2 0.2 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|297527268|ref|YP_003669292.1| - 1.3e-14 54.4 3.5 3.2e-14 53.2 3.5 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|297527268|ref|YP_003669292.1| - 0.044 14.1 0.0 0.19 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF2085 PF09858.9 gi|297527268|ref|YP_003669292.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2085) ATP-synt_ab PF00006.25 gi|297527269|ref|YP_003669293.1| - 5.5e-64 215.7 0.0 7.2e-64 215.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|297527269|ref|YP_003669293.1| - 2.5e-05 24.7 1.0 6e-05 23.5 1.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|297527269|ref|YP_003669293.1| - 0.012 15.7 0.3 0.034 14.3 0.3 1.7 1 0 0 1 1 1 0 HAS barrel domain DUF561 PF04481.12 gi|297527269|ref|YP_003669293.1| - 0.13 11.4 0.0 7.4 5.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) Aldolase_II PF00596.21 gi|297527270|ref|YP_003669294.1| - 9.4e-35 120.2 0.0 1.1e-34 120.1 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Lactamase_B PF00753.27 gi|297527271|ref|YP_003669295.1| - 1.2e-05 25.4 1.1 4.4e-05 23.6 1.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|297527271|ref|YP_003669295.1| - 0.0012 18.4 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Diphthami_syn_2 PF01902.17 gi|297527272|ref|YP_003669296.1| - 2.5e-51 174.3 0.0 2.8e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|297527272|ref|YP_003669296.1| - 0.064 12.8 0.1 0.16 11.4 0.1 1.7 1 1 1 2 2 2 0 Queuosine biosynthesis protein QueC EAP30 PF04157.16 gi|297527272|ref|YP_003669296.1| - 0.11 11.8 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family tRNA-synt_2b PF00587.25 gi|297527274|ref|YP_003669298.1| - 7e-30 104.3 0.0 1.2e-29 103.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|297527274|ref|YP_003669298.1| - 3e-22 78.6 0.0 6.5e-22 77.5 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|297527274|ref|YP_003669298.1| - 3.1e-06 27.3 0.1 1.9e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Peptidase_M28 PF04389.17 gi|297527275|ref|YP_003669299.1| - 4e-13 49.5 0.1 1.1e-12 48.0 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|297527275|ref|YP_003669299.1| - 4.7e-05 23.3 0.0 9.6e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|297527275|ref|YP_003669299.1| - 0.0025 17.6 0.0 0.0043 16.8 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Phage_integrase PF00589.22 gi|297527277|ref|YP_003669301.1| - 8.4e-34 116.8 0.1 1.5e-33 116.0 0.1 1.4 1 0 0 1 1 1 1 Phage integrase family zinc_ribbon_2 PF13240.6 gi|297527277|ref|YP_003669301.1| - 1.9e-10 40.1 2.2 2.9e-10 39.5 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_4 PF13495.6 gi|297527277|ref|YP_003669301.1| - 2.4e-10 40.7 0.2 8.6e-08 32.5 0.0 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain UPF0547 PF10571.9 gi|297527277|ref|YP_003669301.1| - 2e-09 37.4 2.7 3.3e-09 36.6 2.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|297527277|ref|YP_003669301.1| - 3.3e-09 35.8 1.6 5.1e-09 35.2 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_1 PF02899.17 gi|297527277|ref|YP_003669301.1| - 1.1e-07 32.0 0.2 2.9e-06 27.5 0.3 2.9 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.7 gi|297527277|ref|YP_003669301.1| - 3.6e-07 30.1 0.1 5.6e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|297527277|ref|YP_003669301.1| - 1.1e-05 26.0 0.3 2.2e-05 25.1 0.3 1.5 1 0 0 1 1 1 1 zinc-ribbon family Rad50_zn_hook PF04423.14 gi|297527277|ref|YP_003669301.1| - 0.0024 17.7 1.5 0.032 14.1 0.0 3.0 2 1 1 3 3 3 1 Rad50 zinc hook motif Phage_int_SAM_3 PF14659.6 gi|297527277|ref|YP_003669301.1| - 0.0049 17.1 0.0 0.015 15.6 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain TF_Zn_Ribbon PF08271.12 gi|297527277|ref|YP_003669301.1| - 0.016 14.7 2.4 0.047 13.2 2.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|297527277|ref|YP_003669301.1| - 0.016 14.8 0.9 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L32p PF01783.23 gi|297527277|ref|YP_003669301.1| - 0.019 15.2 0.1 0.047 14.0 0.1 1.6 1 0 0 1 1 1 0 Ribosomal L32p protein family OrfB_Zn_ribbon PF07282.11 gi|297527277|ref|YP_003669301.1| - 0.035 14.0 0.8 5.3 7.0 0.1 3.1 2 1 1 3 3 3 0 Putative transposase DNA-binding domain HHH_8 PF14716.6 gi|297527277|ref|YP_003669301.1| - 0.037 14.4 0.1 0.093 13.1 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Sgf11 PF08209.11 gi|297527277|ref|YP_003669301.1| - 0.045 13.3 2.9 0.08 12.5 2.9 1.5 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) DUF2116 PF09889.9 gi|297527277|ref|YP_003669301.1| - 0.085 12.8 1.8 0.11 12.5 0.6 1.8 2 0 0 2 2 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Phage_int_SAM_6 PF18644.1 gi|297527277|ref|YP_003669301.1| - 0.11 12.5 0.3 0.34 10.9 0.0 2.0 2 0 0 2 2 1 0 Phage integrase SAM-like domain zf_UBZ PF18439.1 gi|297527277|ref|YP_003669301.1| - 0.11 12.1 1.5 0.15 11.7 0.5 1.8 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|297527277|ref|YP_003669301.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|297527277|ref|YP_003669301.1| - 0.16 12.2 4.1 0.77 10.0 0.1 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain GFA PF04828.14 gi|297527277|ref|YP_003669301.1| - 0.2 12.0 0.5 4.9 7.6 0.5 2.3 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-ISL3 PF14690.6 gi|297527277|ref|YP_003669301.1| - 0.2 12.3 2.4 17 6.2 0.0 3.2 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_SprT PF17283.2 gi|297527277|ref|YP_003669301.1| - 0.52 10.3 3.6 2.8 7.9 3.6 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF35_N PF12172.8 gi|297527277|ref|YP_003669301.1| - 0.67 9.9 6.1 1.4 8.8 6.1 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|297527277|ref|YP_003669301.1| - 9.1 6.3 7.0 47 4.1 0.8 3.1 2 1 1 3 3 3 0 Transposase zinc-ribbon domain DHHA1 PF02272.19 gi|297527278|ref|YP_003669302.1| - 5.6e-16 59.2 0.0 1.5e-15 57.8 0.0 1.7 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|297527278|ref|YP_003669302.1| - 0.0006 20.0 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 DHH family DUF2258 PF10015.9 gi|297527279|ref|YP_003669303.1| - 1.7e-31 108.2 0.6 5.9e-31 106.4 0.2 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) ssDBP_DBD PF18361.1 gi|297527279|ref|YP_003669303.1| - 0.019 15.1 0.1 0.034 14.3 0.1 1.4 1 0 0 1 1 1 0 Single stranded DNA-binding protein ss DNA binding domain FmdE PF02663.14 gi|297527279|ref|YP_003669303.1| - 1.5 8.9 3.7 9.3 6.3 0.6 2.5 2 1 0 2 2 2 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF4096 PF13340.6 gi|297527281|ref|YP_003669305.1| - 0.09 13.0 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) bact-PGI_C PF10432.9 gi|297527283|ref|YP_003669307.1| - 2.5e-38 131.5 0.0 6.4e-38 130.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|297527283|ref|YP_003669307.1| - 5.8e-09 35.9 0.1 3e-08 33.6 0.0 2.1 2 0 0 2 2 2 1 SIS domain YppF PF14178.6 gi|297527283|ref|YP_003669307.1| - 0.13 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 YppF-like protein UbiA PF01040.18 gi|297527284|ref|YP_003669308.1| - 2.5e-32 112.2 17.5 3.4e-32 111.7 17.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family GalP_UDP_transf PF01087.22 gi|297527285|ref|YP_003669309.1| - 1.3e-25 90.9 0.0 2.3e-25 90.1 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|297527285|ref|YP_003669309.1| - 2.1e-16 60.1 0.2 3.3e-16 59.5 0.2 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4931 PF16285.5 gi|297527285|ref|YP_003669309.1| - 1.2e-06 28.0 0.0 3.7e-05 23.1 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4931) DcpS_C PF11969.8 gi|297527285|ref|YP_003669309.1| - 1.8e-05 25.2 1.6 6.5e-05 23.4 0.4 2.0 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 gi|297527285|ref|YP_003669309.1| - 0.0035 18.0 0.1 0.18 12.6 0.1 2.1 2 0 0 2 2 2 1 HIT domain DUF4921 PF16268.5 gi|297527285|ref|YP_003669309.1| - 0.03 13.2 0.0 0.043 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4921) GHMP_kinases_N PF00288.26 gi|297527286|ref|YP_003669310.1| - 2.2e-13 50.2 0.3 2.2e-13 50.2 0.3 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|297527286|ref|YP_003669310.1| - 1.3e-12 47.9 0.1 3.1e-12 46.7 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|297527286|ref|YP_003669310.1| - 3.1e-10 39.4 0.0 5.6e-10 38.6 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature PaaX PF07848.12 gi|297527286|ref|YP_003669310.1| - 0.1 12.8 0.3 0.23 11.7 0.3 1.5 1 0 0 1 1 1 0 PaaX-like protein Hydrolase_3 PF08282.12 gi|297527287|ref|YP_003669311.1| - 1.2e-28 100.6 0.2 4.8e-18 65.8 0.1 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|297527287|ref|YP_003669311.1| - 3.8e-11 43.0 0.0 1.1e-10 41.5 0.0 1.6 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|297527287|ref|YP_003669311.1| - 5.4e-06 26.8 0.7 1.2 9.4 0.0 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|297527287|ref|YP_003669311.1| - 7.8e-06 26.4 1.4 0.15 12.4 0.0 3.3 1 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|297527287|ref|YP_003669311.1| - 0.0017 18.4 5.9 0.005 16.9 1.2 3.2 2 2 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|297527287|ref|YP_003669311.1| - 0.0022 18.1 0.1 0.0048 17.0 0.0 1.8 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|297527287|ref|YP_003669311.1| - 0.027 13.6 0.0 0.054 12.6 0.0 1.6 1 1 0 1 1 1 0 Trehalose-phosphatase Glyco_hydro_38N PF01074.22 gi|297527291|ref|YP_003669315.1| - 9.7e-61 205.7 0.0 1.5e-60 205.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|297527291|ref|YP_003669315.1| - 4.9e-39 134.6 0.0 9.3e-39 133.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|297527291|ref|YP_003669315.1| - 2.9e-16 59.4 0.0 6e-16 58.4 0.0 1.6 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|297527291|ref|YP_003669315.1| - 6.5e-06 26.2 0.0 1.2e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_57 PF03065.15 gi|297527291|ref|YP_003669315.1| - 0.00049 19.4 0.2 0.0013 18.0 0.2 1.7 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 RHH_1 PF01402.21 gi|297527292|ref|YP_003669316.1| - 7.6e-08 32.0 0.9 1.2e-07 31.4 0.9 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|297527292|ref|YP_003669316.1| - 0.00041 20.2 0.4 0.00059 19.7 0.4 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RelB PF04221.12 gi|297527292|ref|YP_003669316.1| - 0.0057 16.6 0.1 0.0061 16.5 0.1 1.2 1 1 0 1 1 1 1 RelB antitoxin CopG_antitoxin PF12441.8 gi|297527292|ref|YP_003669316.1| - 0.0066 17.0 0.1 0.0088 16.6 0.1 1.2 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system Lactamase_B PF00753.27 gi|297527293|ref|YP_003669317.1| - 2.3e-10 40.8 0.3 3e-10 40.4 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|297527293|ref|YP_003669317.1| - 4.1e-06 26.5 0.0 6.7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Zip PF02535.22 gi|297527294|ref|YP_003669318.1| - 2.3e-21 76.4 19.4 3.5e-20 72.5 8.6 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter tRNA-synt_2c PF01411.19 gi|297527295|ref|YP_003669319.1| - 1.4e-10 40.3 0.7 2.5e-10 39.5 0.7 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|297527295|ref|YP_003669319.1| - 1.3e-08 34.8 0.1 2.5e-08 33.9 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TFIIB PF00382.19 gi|297527296|ref|YP_003669320.1| - 3.3e-39 132.8 3.0 8.2e-19 67.4 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|297527296|ref|YP_003669320.1| - 4.4e-08 32.5 0.1 7.1e-08 31.8 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|297527296|ref|YP_003669320.1| - 7.4e-07 29.3 0.0 0.0093 16.0 0.0 2.4 2 1 0 2 2 2 2 Cyclin, C-terminal domain Cyclin_N PF00134.23 gi|297527296|ref|YP_003669320.1| - 3.9e-05 23.4 0.0 0.079 12.7 0.2 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Sigma70_r4 PF04545.16 gi|297527296|ref|YP_003669320.1| - 0.00015 21.2 1.6 0.0022 17.5 0.3 3.1 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|297527296|ref|YP_003669320.1| - 0.00017 20.9 0.3 0.034 13.5 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 gi|297527296|ref|YP_003669320.1| - 0.0023 17.7 0.1 0.014 15.2 0.1 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain RB_B PF01857.20 gi|297527296|ref|YP_003669320.1| - 0.0027 17.8 0.1 0.0071 16.4 0.1 1.6 2 0 0 2 2 2 1 Retinoblastoma-associated protein B domain Sigma70_r4_2 PF08281.12 gi|297527296|ref|YP_003669320.1| - 0.012 15.3 0.2 0.12 12.1 0.1 2.7 1 1 1 2 2 2 0 Sigma-70, region 4 TFIIB_C_1 PF18542.1 gi|297527296|ref|YP_003669320.1| - 0.013 15.5 3.5 0.045 13.8 1.0 2.5 2 0 0 2 2 2 0 Transcription factor IIB C-terminal module 1 HTH_8 PF02954.19 gi|297527296|ref|YP_003669320.1| - 0.026 14.3 2.2 1 9.2 0.1 3.7 4 1 0 4 4 4 0 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.6 gi|297527296|ref|YP_003669320.1| - 0.035 14.1 0.2 0.87 9.6 0.0 2.8 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain UPF0253 PF06786.12 gi|297527296|ref|YP_003669320.1| - 0.045 14.0 0.0 0.18 12.1 0.0 2.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0253) HTH_11 PF08279.12 gi|297527296|ref|YP_003669320.1| - 0.08 12.9 0.1 0.41 10.6 0.0 2.2 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.20 gi|297527296|ref|YP_003669320.1| - 0.27 11.6 1.9 6 7.3 0.1 3.1 1 1 2 3 3 3 0 Transcriptional regulator SUI1 PF01253.22 gi|297527297|ref|YP_003669321.1| - 2e-21 76.3 1.8 2.5e-21 76.0 1.8 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|297527297|ref|YP_003669321.1| - 0.001 19.3 1.0 0.0014 18.9 1.0 1.3 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) Cas_VVA1548 PF09652.10 gi|297527297|ref|YP_003669321.1| - 0.076 13.2 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative CRISPR-associated protein (Cas_VVA1548) DNA_RNApol_7kD PF03604.13 gi|297527298|ref|YP_003669322.1| - 8e-07 28.6 6.2 1e-05 25.1 6.2 2.0 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|297527298|ref|YP_003669322.1| - 7.1e-06 26.0 1.0 9.6e-06 25.6 1.0 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|297527298|ref|YP_003669322.1| - 0.00018 21.4 3.1 0.008 16.1 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|297527298|ref|YP_003669322.1| - 0.00094 19.0 1.1 0.0021 17.9 1.1 1.6 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|297527298|ref|YP_003669322.1| - 0.0016 18.5 0.1 0.0016 18.5 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|297527298|ref|YP_003669322.1| - 0.0025 17.3 0.6 0.0034 16.9 0.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Cys_rich_CPXG PF14255.6 gi|297527298|ref|YP_003669322.1| - 0.0033 17.3 0.8 0.26 11.2 0.2 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-C2H2 PF00096.26 gi|297527298|ref|YP_003669322.1| - 0.0033 17.8 0.4 2.4 8.8 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.6 gi|297527298|ref|YP_003669322.1| - 0.0044 16.7 0.7 1.1 9.1 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|297527298|ref|YP_003669322.1| - 0.0047 16.6 4.5 0.11 12.3 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|297527298|ref|YP_003669322.1| - 0.0047 16.5 1.8 0.028 14.0 0.1 2.0 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|297527298|ref|YP_003669322.1| - 0.0074 16.3 0.4 0.018 15.1 0.4 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-C2HC_2 PF13913.6 gi|297527298|ref|YP_003669322.1| - 0.0078 16.1 4.1 1.3 9.0 0.6 2.3 2 0 0 2 2 2 2 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.6 gi|297527298|ref|YP_003669322.1| - 0.011 15.1 2.1 0.12 11.9 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|297527298|ref|YP_003669322.1| - 0.012 15.6 0.9 1.6 8.8 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-Di19 PF05605.12 gi|297527298|ref|YP_003669322.1| - 0.021 15.1 0.4 1 9.7 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding PyrI_C PF02748.15 gi|297527298|ref|YP_003669322.1| - 0.024 14.5 4.0 1.8 8.6 0.4 2.1 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2_4 PF13894.6 gi|297527298|ref|YP_003669322.1| - 0.024 15.4 0.8 5.3 8.2 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger YhfH PF14149.6 gi|297527298|ref|YP_003669322.1| - 0.026 14.5 2.8 0.58 10.2 0.6 2.1 1 1 1 2 2 2 0 YhfH-like protein TFIIS_C PF01096.18 gi|297527298|ref|YP_003669322.1| - 0.028 14.3 1.9 2.1 8.2 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3268 PF11672.8 gi|297527298|ref|YP_003669322.1| - 0.047 14.0 2.4 0.93 9.8 0.4 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain zf-LITAF-like PF10601.9 gi|297527298|ref|YP_003669322.1| - 0.049 13.9 0.2 2.2 8.6 0.0 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DiS_P_DiS PF06750.13 gi|297527298|ref|YP_003669322.1| - 0.052 13.7 0.4 0.064 13.4 0.4 1.3 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain DUF4379 PF14311.6 gi|297527298|ref|YP_003669322.1| - 0.052 13.9 0.3 0.078 13.4 0.3 1.3 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zf-trcl PF13451.6 gi|297527298|ref|YP_003669322.1| - 0.054 13.4 0.8 2.3 8.2 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain Prok-RING_1 PF14446.6 gi|297527298|ref|YP_003669322.1| - 0.055 13.4 1.0 0.18 11.7 1.1 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 YacG PF03884.14 gi|297527298|ref|YP_003669322.1| - 0.064 13.0 0.1 0.92 9.3 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG PriA_CRR PF18319.1 gi|297527298|ref|YP_003669322.1| - 0.064 13.3 3.7 0.11 12.5 0.3 2.1 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain zf-CSL PF05207.13 gi|297527298|ref|YP_003669322.1| - 0.073 12.8 2.9 0.1 12.3 2.9 1.4 1 1 0 1 1 1 0 CSL zinc finger UPF0547 PF10571.9 gi|297527298|ref|YP_003669322.1| - 0.079 13.1 5.2 0.31 11.2 0.8 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 C1_1 PF00130.22 gi|297527298|ref|YP_003669322.1| - 0.079 12.9 0.5 0.19 11.6 0.6 1.6 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_SprT PF17283.2 gi|297527298|ref|YP_003669322.1| - 0.093 12.7 7.2 1.4 8.9 7.2 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Desulfoferrod_N PF06397.12 gi|297527298|ref|YP_003669322.1| - 0.16 11.6 2.7 0.89 9.2 0.1 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|297527298|ref|YP_003669322.1| - 0.17 11.8 1.6 1 9.4 1.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-CHCC PF10276.9 gi|297527298|ref|YP_003669322.1| - 0.18 11.9 0.4 0.18 11.9 0.4 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-HIT PF04438.16 gi|297527298|ref|YP_003669322.1| - 0.19 11.6 5.8 0.63 10.0 0.4 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-Mss51 PF13824.6 gi|297527298|ref|YP_003669322.1| - 0.22 11.7 3.3 4.2 7.5 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-BED PF02892.15 gi|297527298|ref|YP_003669322.1| - 0.28 11.2 2.7 0.3 11.1 0.2 1.9 1 1 1 2 2 2 0 BED zinc finger zf-H2C2_2 PF13465.6 gi|297527298|ref|YP_003669322.1| - 0.33 11.5 2.4 3.2 8.3 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Ribosomal_L37e PF01907.19 gi|297527298|ref|YP_003669322.1| - 4 7.7 7.1 22 5.3 7.1 1.9 1 1 0 1 1 1 0 Ribosomal protein L37e Arginase PF00491.21 gi|297527299|ref|YP_003669323.1| - 2.3e-63 214.3 0.0 2.8e-63 214.1 0.0 1.0 1 0 0 1 1 1 1 Arginase family HGTP_anticodon PF03129.20 gi|297527300|ref|YP_003669324.1| - 2.3e-23 82.2 1.6 3.5e-23 81.6 0.1 2.2 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|297527300|ref|YP_003669324.1| - 1.4e-09 38.1 0.4 9.3e-09 35.5 0.4 2.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2H2 PF00096.26 gi|297527300|ref|YP_003669324.1| - 0.055 13.9 1.9 11 6.7 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|297527300|ref|YP_003669324.1| - 0.074 13.2 2.4 1 9.5 2.4 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.6 gi|297527300|ref|YP_003669324.1| - 0.32 12.0 0.7 81 4.5 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger MazE_antitoxin PF04014.18 gi|297527301|ref|YP_003669325.1| - 0.00078 19.3 0.1 0.0018 18.1 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Rad60-SLD PF11976.8 gi|297527301|ref|YP_003669325.1| - 0.088 12.6 2.1 0.45 10.4 2.1 2.1 1 1 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like Radical_SAM PF04055.21 gi|297527303|ref|YP_003669327.1| - 5.5e-16 59.4 0.0 1.6e-15 57.9 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|297527303|ref|YP_003669327.1| - 3.9e-07 30.1 0.0 7.8e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain PhoU_div PF01865.16 gi|297527304|ref|YP_003669328.1| - 9e-09 35.0 2.1 1.6e-08 34.1 0.3 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF47 HNOB PF07700.15 gi|297527304|ref|YP_003669328.1| - 0.047 13.6 0.1 0.8 9.6 0.0 2.2 2 0 0 2 2 2 0 Haem-NO-binding GAIN PF16489.5 gi|297527304|ref|YP_003669328.1| - 0.072 12.5 1.0 0.23 10.8 1.0 1.9 1 1 0 1 1 1 0 GPCR-Autoproteolysis INducing (GAIN) domain PhoU PF01895.19 gi|297527304|ref|YP_003669328.1| - 0.085 13.3 4.4 0.72 10.4 0.6 2.8 2 1 0 2 2 2 0 PhoU domain tRNA_int_endo PF01974.17 gi|297527305|ref|YP_003669329.1| - 6.6e-25 87.0 0.1 9.6e-25 86.5 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|297527305|ref|YP_003669329.1| - 2.2e-15 56.1 0.2 3.5e-15 55.4 0.2 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|297527305|ref|YP_003669329.1| - 0.017 15.3 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term Flavoprotein PF02441.19 gi|297527307|ref|YP_003669331.1| - 1.8e-24 86.3 0.2 2.3e-24 86.0 0.2 1.1 1 0 0 1 1 1 1 Flavoprotein TIP49_C PF17856.1 gi|297527307|ref|YP_003669331.1| - 0.12 12.5 1.0 0.32 11.2 0.0 2.1 3 0 0 3 3 3 0 TIP49 AAA-lid domain ATPase PF06745.13 gi|297527309|ref|YP_003669333.1| - 4.3e-58 196.4 0.1 5e-58 196.2 0.1 1.0 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|297527309|ref|YP_003669333.1| - 2.8e-07 30.1 0.2 5.5e-07 29.1 0.2 1.5 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|297527309|ref|YP_003669333.1| - 3.7e-07 29.9 0.0 6.3e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|297527309|ref|YP_003669333.1| - 5.4e-05 22.8 0.1 7.7e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|297527309|ref|YP_003669333.1| - 8.6e-05 21.3 0.3 0.00023 19.9 0.2 1.7 1 1 1 2 2 2 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|297527309|ref|YP_003669333.1| - 0.00082 18.8 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|297527309|ref|YP_003669333.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.17 gi|297527309|ref|YP_003669333.1| - 0.0029 17.4 0.1 0.022 14.5 0.0 2.0 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|297527309|ref|YP_003669333.1| - 0.0056 16.4 0.0 0.0089 15.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|297527309|ref|YP_003669333.1| - 0.044 14.1 0.1 0.085 13.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|297527309|ref|YP_003669333.1| - 0.048 13.7 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|297527309|ref|YP_003669333.1| - 0.059 12.6 0.0 0.091 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|297527309|ref|YP_003669333.1| - 0.082 12.0 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Helicase_RecD PF05127.14 gi|297527310|ref|YP_003669334.1| - 6.3e-55 185.8 0.0 1.1e-54 185.0 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|297527310|ref|YP_003669334.1| - 2.1e-42 145.1 0.0 7.1e-31 107.4 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|297527310|ref|YP_003669334.1| - 3.5e-30 103.8 0.0 9.7e-30 102.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|297527310|ref|YP_003669334.1| - 3.2e-09 36.8 0.0 7.7e-09 35.6 0.0 1.5 1 1 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|297527310|ref|YP_003669334.1| - 0.00076 19.7 0.0 0.0027 17.9 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|297527310|ref|YP_003669334.1| - 0.0016 18.9 0.1 0.0091 16.4 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain TniB PF05621.11 gi|297527310|ref|YP_003669334.1| - 0.11 11.9 0.1 3 7.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_11 PF13086.6 gi|297527310|ref|YP_003669334.1| - 0.19 11.5 0.3 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|297527311|ref|YP_003669335.1| - 1.2e-98 326.6 0.0 1.5e-48 164.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|297527311|ref|YP_003669335.1| - 4.3e-40 135.3 3.3 9e-21 73.4 0.2 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|297527311|ref|YP_003669335.1| - 7.7e-31 106.1 0.7 5.2e-30 103.5 1.3 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|297527311|ref|YP_003669335.1| - 2.3e-16 59.9 0.0 4.1e-08 33.1 0.0 3.0 3 1 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|297527311|ref|YP_003669335.1| - 3.5e-15 56.5 0.0 1.2e-07 32.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|297527311|ref|YP_003669335.1| - 6.9e-14 52.6 0.2 2.1e-06 28.2 0.0 3.3 2 1 0 2 2 2 2 AAA ATPase domain TIP49 PF06068.13 gi|297527311|ref|YP_003669335.1| - 6.6e-13 48.6 0.0 3.3e-05 23.3 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain CDC48_2 PF02933.17 gi|297527311|ref|YP_003669335.1| - 2.4e-12 46.4 2.1 1.6e-11 43.8 0.3 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), domain 2 AAA_33 PF13671.6 gi|297527311|ref|YP_003669335.1| - 7e-12 45.7 0.0 2.6e-05 24.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|297527311|ref|YP_003669335.1| - 7.1e-12 45.8 1.1 0.0035 17.6 0.0 4.2 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|297527311|ref|YP_003669335.1| - 1.5e-11 44.4 0.6 0.00011 22.3 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) Vps4_C PF09336.10 gi|297527311|ref|YP_003669335.1| - 2.2e-10 40.4 0.1 7.6e-05 22.6 0.0 2.8 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_14 PF13173.6 gi|297527311|ref|YP_003669335.1| - 3.5e-09 36.8 0.0 0.00028 20.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|297527311|ref|YP_003669335.1| - 8.2e-09 35.4 0.0 0.0035 17.1 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|297527311|ref|YP_003669335.1| - 9.5e-09 35.9 0.1 0.0043 17.6 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_28 PF13521.6 gi|297527311|ref|YP_003669335.1| - 4.9e-08 33.4 0.0 0.0061 16.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|297527311|ref|YP_003669335.1| - 3.9e-07 30.4 0.0 0.0086 16.5 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|297527311|ref|YP_003669335.1| - 5e-07 29.3 1.2 0.027 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|297527311|ref|YP_003669335.1| - 1.4e-06 28.0 3.9 0.22 11.1 0.8 4.4 3 1 0 3 3 3 2 AAA domain TsaE PF02367.17 gi|297527311|ref|YP_003669335.1| - 2.2e-06 27.7 0.2 0.056 13.5 0.0 2.7 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|297527311|ref|YP_003669335.1| - 4.6e-06 26.5 0.0 0.039 13.8 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|297527311|ref|YP_003669335.1| - 8.4e-06 25.3 0.3 0.19 11.1 0.0 3.5 3 0 0 3 3 3 2 KaiC Sigma54_activat PF00158.26 gi|297527311|ref|YP_003669335.1| - 1.5e-05 24.8 0.1 0.49 10.1 0.0 3.4 2 1 0 2 2 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|297527311|ref|YP_003669335.1| - 1.7e-05 24.2 0.3 0.13 11.5 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_24 PF13479.6 gi|297527311|ref|YP_003669335.1| - 2.6e-05 24.1 0.0 0.27 11.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.18 gi|297527311|ref|YP_003669335.1| - 3.5e-05 23.8 0.0 0.0037 17.1 0.0 2.7 3 0 0 3 3 2 1 Bacterial dnaA protein AAA_7 PF12775.7 gi|297527311|ref|YP_003669335.1| - 3.7e-05 23.3 0.0 0.37 10.3 0.0 2.5 2 1 0 2 2 2 2 P-loop containing dynein motor region Molydop_binding PF01568.21 gi|297527311|ref|YP_003669335.1| - 4.9e-05 23.3 0.1 0.00013 21.9 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain ABC_tran PF00005.27 gi|297527311|ref|YP_003669335.1| - 5.7e-05 23.6 0.0 0.66 10.5 0.0 2.7 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.16 gi|297527311|ref|YP_003669335.1| - 6.9e-05 22.4 0.7 0.2 11.1 0.1 2.6 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.13 gi|297527311|ref|YP_003669335.1| - 0.00012 21.3 0.0 0.44 9.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|297527311|ref|YP_003669335.1| - 0.00015 21.8 1.8 0.21 11.5 0.1 3.4 3 1 1 4 4 3 1 NACHT domain DUF2075 PF09848.9 gi|297527311|ref|YP_003669335.1| - 0.00021 20.7 0.0 0.1 11.8 0.0 2.6 3 0 0 3 3 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|297527311|ref|YP_003669335.1| - 0.00021 21.2 0.0 0.23 11.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.17 gi|297527311|ref|YP_003669335.1| - 0.00032 19.9 0.3 0.25 10.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Rad17 PF03215.15 gi|297527311|ref|YP_003669335.1| - 0.00041 20.3 0.0 0.76 9.7 0.0 3.1 2 1 0 2 2 2 1 Rad17 P-loop domain Sigma54_activ_2 PF14532.6 gi|297527311|ref|YP_003669335.1| - 0.0013 18.8 0.0 1.1 9.4 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain T2SSE PF00437.20 gi|297527311|ref|YP_003669335.1| - 0.0018 17.4 0.0 1.3 8.1 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|297527311|ref|YP_003669335.1| - 0.0027 17.6 0.1 0.66 9.8 0.0 3.0 2 1 1 3 3 2 1 ATPase domain predominantly from Archaea AAA_17 PF13207.6 gi|297527311|ref|YP_003669335.1| - 0.0041 17.5 0.0 3.6 8.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|297527311|ref|YP_003669335.1| - 0.0057 16.4 3.1 0.84 9.3 0.1 2.9 3 1 0 3 3 2 1 AAA domain Cytidylate_kin PF02224.18 gi|297527311|ref|YP_003669335.1| - 0.0065 16.2 0.1 2.9 7.5 0.0 2.7 2 0 0 2 2 2 1 Cytidylate kinase NB-ARC PF00931.22 gi|297527311|ref|YP_003669335.1| - 0.0095 15.1 0.1 2.2 7.4 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain Viral_helicase1 PF01443.18 gi|297527311|ref|YP_003669335.1| - 0.0098 15.7 0.0 4.3 7.0 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_6 PF12774.7 gi|297527311|ref|YP_003669335.1| - 0.011 14.7 0.0 0.4 9.6 0.0 2.4 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region AAA_19 PF13245.6 gi|297527311|ref|YP_003669335.1| - 0.011 16.0 3.4 4.8 7.5 0.2 3.1 2 1 1 3 3 3 0 AAA domain ResIII PF04851.15 gi|297527311|ref|YP_003669335.1| - 0.016 15.2 0.1 5.1 7.1 0.0 2.7 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|297527311|ref|YP_003669335.1| - 0.019 13.9 0.0 2.9 6.7 0.0 2.9 4 0 0 4 4 3 0 AFG1-like ATPase PduV-EutP PF10662.9 gi|297527311|ref|YP_003669335.1| - 0.021 14.6 0.0 9.1 6.0 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation TniB PF05621.11 gi|297527311|ref|YP_003669335.1| - 0.027 13.9 0.0 14 5.0 0.0 3.5 3 1 1 4 4 4 0 Bacterial TniB protein IPT PF01745.16 gi|297527311|ref|YP_003669335.1| - 0.055 12.9 0.5 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Guanylate_kin PF00625.21 gi|297527311|ref|YP_003669335.1| - 0.058 13.1 0.3 35 4.0 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase SKI PF01202.22 gi|297527311|ref|YP_003669335.1| - 0.082 13.0 0.0 16 5.6 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|297527311|ref|YP_003669335.1| - 0.083 12.6 0.0 16 5.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Hydin_ADK PF17213.3 gi|297527311|ref|YP_003669335.1| - 0.1 12.9 0.0 2.3 8.5 0.0 2.2 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Torsin PF06309.11 gi|297527311|ref|YP_003669335.1| - 0.11 12.6 0.0 2.7 8.1 0.0 2.4 2 0 0 2 2 2 0 Torsin HEPN_SAV_6107 PF18726.1 gi|297527311|ref|YP_003669335.1| - 0.2 12.2 0.7 2.1 8.9 0.1 2.6 2 0 0 2 2 2 0 SAV_6107-like HEPN NTPase_1 PF03266.15 gi|297527311|ref|YP_003669335.1| - 0.39 10.6 6.7 23 4.9 0.0 4.3 3 1 0 4 4 4 0 NTPase ATPase PF06745.13 gi|297527312|ref|YP_003669336.1| - 6.6e-88 293.9 0.0 7.5e-88 293.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|297527312|ref|YP_003669336.1| - 7.1e-06 25.7 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|297527312|ref|YP_003669336.1| - 6.2e-05 21.8 0.5 0.0016 17.2 0.1 2.0 2 0 0 2 2 2 1 GvpD gas vesicle protein PPV_E1_C PF00519.17 gi|297527312|ref|YP_003669336.1| - 0.015 14.2 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase Rad51 PF08423.11 gi|297527312|ref|YP_003669336.1| - 0.057 12.7 0.2 0.14 11.4 0.0 1.7 2 0 0 2 2 2 0 Rad51 DUF2075 PF09848.9 gi|297527312|ref|YP_003669336.1| - 0.14 11.4 0.4 0.35 10.1 0.3 1.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|297527312|ref|YP_003669336.1| - 0.16 12.3 0.1 0.35 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain Topoisom_bac PF01131.20 gi|297527313|ref|YP_003669337.1| - 1.3e-76 258.3 0.2 2.8e-76 257.2 0.2 1.7 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|297527313|ref|YP_003669337.1| - 7.7e-25 87.1 0.0 6.7e-24 84.1 0.0 2.8 1 0 0 1 1 1 1 Toprim domain Helicase_C PF00271.31 gi|297527313|ref|YP_003669337.1| - 4e-12 46.5 0.6 5.6e-05 23.4 0.2 4.0 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|297527313|ref|YP_003669337.1| - 2e-11 44.0 0.1 1.3e-10 41.3 0.1 2.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|297527313|ref|YP_003669337.1| - 1e-07 32.1 1.4 1.2e-06 28.7 0.8 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf_Rg PF17915.1 gi|297527313|ref|YP_003669337.1| - 2.9e-06 26.6 2.3 4e-05 22.9 0.2 2.6 2 0 0 2 2 2 1 Reverse gyrase zinc finger DUF3287 PF11690.8 gi|297527313|ref|YP_003669337.1| - 0.00053 19.7 5.7 0.00094 18.9 0.5 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3287) DZR PF12773.7 gi|297527313|ref|YP_003669337.1| - 0.0023 17.9 1.0 0.0023 17.9 1.0 2.4 2 0 0 2 2 2 1 Double zinc ribbon HypA PF01155.19 gi|297527313|ref|YP_003669337.1| - 0.0026 17.8 1.4 0.023 14.7 0.1 2.7 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|297527313|ref|YP_003669337.1| - 0.0056 15.5 0.7 0.018 13.9 0.7 1.8 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|297527313|ref|YP_003669337.1| - 0.0088 16.1 10.7 0.02 15.0 1.1 2.9 2 0 0 2 2 2 1 Zinc ribbon domain AAA_22 PF13401.6 gi|297527313|ref|YP_003669337.1| - 0.022 15.0 2.9 0.53 10.6 0.4 4.0 3 1 1 4 4 3 0 AAA domain DUF35_N PF12172.8 gi|297527313|ref|YP_003669337.1| - 0.054 13.4 4.7 0.085 12.8 0.8 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Helicase_C_2 PF13307.6 gi|297527313|ref|YP_003669337.1| - 0.19 11.9 5.0 1.8 8.7 0.0 3.9 5 0 0 5 5 5 0 Helicase C-terminal domain DnaJ_CXXCXGXG PF00684.19 gi|297527313|ref|YP_003669337.1| - 0.21 12.0 3.0 4.5 7.7 0.2 2.4 2 0 0 2 2 2 0 DnaJ central domain zf-ribbon_3 PF13248.6 gi|297527313|ref|YP_003669337.1| - 0.23 10.9 11.5 0.035 13.5 4.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|297527313|ref|YP_003669337.1| - 0.36 11.6 3.8 0.13 13.0 0.6 2.0 2 0 0 2 2 1 0 zinc-ribbon family DUF1272 PF06906.11 gi|297527313|ref|YP_003669337.1| - 1.1 9.4 4.6 22 5.2 1.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DUF87 PF01935.17 gi|297527313|ref|YP_003669337.1| - 1.3 9.0 7.8 7.2 6.6 0.0 3.7 4 0 0 4 4 3 0 Helicase HerA, central domain TackOD1 PF18551.1 gi|297527313|ref|YP_003669337.1| - 1.7 8.3 7.4 0.43 10.2 0.2 3.1 3 0 0 3 3 3 0 Thaumarchaeal output domain 1 Occludin_ELL PF07303.13 gi|297527313|ref|YP_003669337.1| - 8.6 7.1 17.0 14 6.5 3.4 3.9 3 0 0 3 3 3 0 Occludin homology domain CN_hydrolase PF00795.22 gi|297527314|ref|YP_003669338.1| - 0.014 14.7 0.0 0.064 12.6 0.0 1.9 1 1 0 1 1 1 0 Carbon-nitrogen hydrolase eIF-5a PF01287.20 gi|297527316|ref|YP_003669340.1| - 6.3e-08 32.6 0.6 9.6e-08 32.0 0.6 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|297527316|ref|YP_003669340.1| - 1e-07 31.9 0.2 3.6e-06 26.9 0.0 2.3 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|297527316|ref|YP_003669340.1| - 0.0057 16.7 0.2 0.0099 15.9 0.2 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain DUF2139 PF09910.9 gi|297527317|ref|YP_003669341.1| - 3.9e-156 519.5 0.1 4.6e-156 519.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) GDC-P PF02347.16 gi|297527318|ref|YP_003669342.1| - 4e-09 35.8 0.0 2.2e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|297527318|ref|YP_003669342.1| - 1.2e-06 27.7 0.0 2.5e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|297527318|ref|YP_003669342.1| - 0.0037 16.5 0.0 0.0062 15.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|297527318|ref|YP_003669342.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase GDC-P PF02347.16 gi|297527319|ref|YP_003669343.1| - 5.8e-117 391.1 0.0 6.8e-117 390.9 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|297527319|ref|YP_003669343.1| - 0.00025 20.1 0.0 0.00048 19.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|297527319|ref|YP_003669343.1| - 0.0031 16.1 0.0 0.0065 15.0 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme GCV_T PF01571.21 gi|297527320|ref|YP_003669344.1| - 1.3e-63 214.8 0.0 1.7e-63 214.4 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|297527320|ref|YP_003669344.1| - 7.8e-15 54.6 0.0 1.4e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain NAD_kinase PF01513.21 gi|297527321|ref|YP_003669345.1| - 4.5e-53 180.3 0.4 5.1e-53 180.2 0.4 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|297527321|ref|YP_003669345.1| - 4.5e-08 32.8 0.0 1.4e-07 31.2 0.0 1.8 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|297527321|ref|YP_003669345.1| - 0.023 14.0 0.3 0.14 11.4 0.0 2.0 2 0 0 2 2 2 0 Phosphofructokinase SHMT PF00464.19 gi|297527322|ref|YP_003669346.1| - 2.1e-71 240.6 0.2 2.8e-71 240.2 0.2 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|297527322|ref|YP_003669346.1| - 6.6e-09 35.4 0.1 1.7e-08 34.1 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|297527322|ref|YP_003669346.1| - 2.2e-07 30.5 0.0 3.2e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|297527322|ref|YP_003669346.1| - 3.7e-06 26.2 0.2 5.8e-06 25.5 0.2 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|297527322|ref|YP_003669346.1| - 0.0025 16.4 0.2 0.0049 15.5 0.2 1.6 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AvrE_T3Es PF11725.8 gi|297527322|ref|YP_003669346.1| - 0.0055 14.0 0.1 0.0072 13.6 0.1 1.0 1 0 0 1 1 1 1 AvrE-family Type-III effector proteins (T3Es) DegT_DnrJ_EryC1 PF01041.17 gi|297527322|ref|YP_003669346.1| - 0.0093 15.3 0.5 0.016 14.5 0.5 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.13 gi|297527322|ref|YP_003669346.1| - 0.12 11.4 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase GCV_H PF01597.19 gi|297527323|ref|YP_003669347.1| - 1.6e-44 150.7 1.9 1.9e-44 150.4 1.9 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|297527323|ref|YP_003669347.1| - 0.0052 16.7 0.0 0.0075 16.2 0.0 1.4 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|297527323|ref|YP_003669347.1| - 0.0058 16.4 0.4 0.0058 16.4 0.4 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme DUF881 PF05949.12 gi|297527324|ref|YP_003669348.1| - 0.093 12.6 0.4 0.54 10.1 0.4 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF881) KH_1 PF00013.29 gi|297527325|ref|YP_003669349.1| - 2.6e-10 40.0 3.0 0.00041 20.1 0.1 2.4 2 0 0 2 2 2 2 KH domain DUF5600 PF18150.1 gi|297527325|ref|YP_003669349.1| - 0.073 13.7 0.0 0.27 11.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5600) KH_8 PF17903.1 gi|297527325|ref|YP_003669349.1| - 0.094 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Krr1 KH1 domain KH_2 PF07650.17 gi|297527325|ref|YP_003669349.1| - 2.4 8.1 7.1 19 5.2 0.2 2.5 2 1 0 2 2 2 0 KH domain RIO1 PF01163.22 gi|297527326|ref|YP_003669350.1| - 8e-59 198.4 0.1 1.1e-58 197.9 0.1 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|297527326|ref|YP_003669350.1| - 0.00035 20.6 0.0 0.0026 17.7 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|297527326|ref|YP_003669350.1| - 0.0011 18.4 0.0 0.056 12.8 0.0 2.2 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|297527326|ref|YP_003669350.1| - 0.0029 16.4 0.3 0.0042 15.9 0.3 1.2 1 0 0 1 1 1 1 Fungal protein kinase Pkinase PF00069.25 gi|297527326|ref|YP_003669350.1| - 0.0066 15.9 1.1 0.016 14.6 0.3 1.9 2 1 0 2 2 2 1 Protein kinase domain eIF-1a PF01176.19 gi|297527327|ref|YP_003669351.1| - 4.2e-20 71.3 1.1 5.8e-20 70.9 1.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 NMD3 PF04981.13 gi|297527328|ref|YP_003669352.1| - 2.5e-38 131.9 0.0 3.3e-38 131.5 0.0 1.2 1 0 0 1 1 1 1 NMD3 family zf-ACC PF17848.1 gi|297527328|ref|YP_003669352.1| - 0.0068 16.5 4.0 2.1 8.5 0.0 3.0 3 0 0 3 3 3 2 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|297527328|ref|YP_003669352.1| - 0.012 15.6 0.3 0.34 11.0 0.2 2.6 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|297527328|ref|YP_003669352.1| - 0.13 12.0 10.7 0.65 9.8 1.8 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|297527328|ref|YP_003669352.1| - 0.55 10.2 4.6 33 4.5 0.1 3.4 3 0 0 3 3 3 0 Nudix N-terminal zf-dskA_traR PF01258.17 gi|297527328|ref|YP_003669352.1| - 0.6 10.1 4.2 2.3 8.2 0.1 3.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf_UBZ PF18439.1 gi|297527328|ref|YP_003669352.1| - 1.7 8.3 4.4 17 5.1 0.1 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|297527328|ref|YP_003669352.1| - 9.6 6.3 8.8 22 5.1 0.9 3.3 3 0 0 3 3 3 0 YhfH-like protein DUF424 PF04242.13 gi|297527329|ref|YP_003669353.1| - 4.6e-27 94.1 0.0 5.4e-27 93.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) HARE-HTH PF05066.13 gi|297527329|ref|YP_003669353.1| - 0.042 14.2 0.0 0.13 12.7 0.0 1.8 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain eIF-5_eIF-2B PF01873.17 gi|297527330|ref|YP_003669354.1| - 1.3e-32 112.1 0.0 1.6e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Zn-ribbon_8 PF09723.10 gi|297527330|ref|YP_003669354.1| - 0.00096 19.2 4.1 0.018 15.2 1.5 2.0 1 1 1 2 2 2 2 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|297527330|ref|YP_003669354.1| - 0.0011 18.9 0.7 0.74 9.8 0.3 2.3 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|297527330|ref|YP_003669354.1| - 0.0038 17.2 0.2 0.0062 16.5 0.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DpnI PF06044.12 gi|297527330|ref|YP_003669354.1| - 0.013 15.1 0.0 0.04 13.5 0.0 1.7 2 0 0 2 2 2 0 Dam-replacing family zf-TFIIB PF13453.6 gi|297527330|ref|YP_003669354.1| - 0.019 14.3 0.4 0.032 13.6 0.4 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-RING_7 PF02591.15 gi|297527330|ref|YP_003669354.1| - 0.049 13.8 0.3 4 7.7 0.0 2.4 1 1 1 2 2 2 0 C4-type zinc ribbon domain Lar_restr_allev PF14354.6 gi|297527330|ref|YP_003669354.1| - 0.054 13.9 0.4 0.092 13.1 0.4 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|297527330|ref|YP_003669354.1| - 0.066 13.3 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon CpXC PF14353.6 gi|297527330|ref|YP_003669354.1| - 0.072 13.1 2.1 0.29 11.2 0.1 2.2 1 1 1 2 2 2 0 CpXC protein zf-RRN7 PF11781.8 gi|297527330|ref|YP_003669354.1| - 0.096 12.4 0.2 7.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Elf1 PF05129.13 gi|297527330|ref|YP_003669354.1| - 0.099 12.7 0.5 0.17 11.9 0.5 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like HypA PF01155.19 gi|297527330|ref|YP_003669354.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|297527330|ref|YP_003669354.1| - 0.2 11.6 1.9 6.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF3797 PF12677.7 gi|297527330|ref|YP_003669354.1| - 0.2 11.6 2.2 0.54 10.2 2.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 gi|297527330|ref|YP_003669354.1| - 0.25 10.8 1.7 1.6 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|297527330|ref|YP_003669354.1| - 0.49 10.3 3.0 19 5.2 0.1 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.13 gi|297527330|ref|YP_003669354.1| - 1 9.1 3.6 5.1 6.9 0.3 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.6 gi|297527330|ref|YP_003669354.1| - 1.2 9.9 3.7 1.5 9.6 1.5 2.3 2 1 0 2 2 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.6 gi|297527330|ref|YP_003669354.1| - 1.2 9.1 3.7 8.9 6.3 3.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|297527330|ref|YP_003669354.1| - 2 8.2 4.2 31 4.3 4.2 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Radical_SAM PF04055.21 gi|297527331|ref|YP_003669355.1| - 2.3e-26 93.2 0.4 4.2e-26 92.3 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|297527331|ref|YP_003669355.1| - 5.3e-24 84.1 0.2 1.1e-23 83.0 0.2 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|297527331|ref|YP_003669355.1| - 0.0013 18.6 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|297527331|ref|YP_003669355.1| - 0.0086 16.2 0.0 0.066 13.4 0.0 2.5 2 1 0 2 2 2 1 TRAM domain PDDEXK_10 PF07788.11 gi|297527331|ref|YP_003669355.1| - 0.055 13.4 0.2 0.14 12.1 0.2 1.7 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily EOS1 PF12326.8 gi|297527332|ref|YP_003669356.1| - 0.019 14.9 3.3 0.026 14.4 3.3 1.4 1 0 0 1 1 1 0 N-glycosylation protein TRP PF06011.12 gi|297527332|ref|YP_003669356.1| - 0.11 11.2 9.7 0.13 11.0 9.7 1.1 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF4271 PF14093.6 gi|297527332|ref|YP_003669356.1| - 0.56 10.1 15.4 0.76 9.7 15.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) TrkA_N PF02254.18 gi|297527333|ref|YP_003669357.1| - 7.7e-17 61.6 0.4 1.1e-16 61.1 0.4 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|297527333|ref|YP_003669357.1| - 1.3e-08 34.6 0.1 3.4e-08 33.2 0.1 1.8 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|297527333|ref|YP_003669357.1| - 4e-08 33.6 0.1 6.4e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|297527333|ref|YP_003669357.1| - 0.00051 20.6 0.0 0.001 19.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|297527333|ref|YP_003669357.1| - 0.0016 18.5 0.1 0.0025 17.9 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|297527333|ref|YP_003669357.1| - 0.0083 16.4 0.2 0.015 15.5 0.1 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain LpxI_N PF17930.1 gi|297527333|ref|YP_003669357.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 LpxI N-terminal domain DNA_III_psi PF03603.13 gi|297527333|ref|YP_003669357.1| - 0.15 12.3 0.0 1.9 8.8 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III psi subunit XdhC_C PF13478.6 gi|297527333|ref|YP_003669357.1| - 0.17 12.4 0.0 0.23 12.0 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain TrkH PF02386.16 gi|297527334|ref|YP_003669358.1| - 3.8e-49 167.5 23.2 7.6e-29 100.5 11.5 2.1 1 1 1 2 2 2 2 Cation transport protein SLATT_1 PF18181.1 gi|297527334|ref|YP_003669358.1| - 0.33 10.9 2.1 1.9 8.4 0.1 2.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Form-deh_trans PF09163.11 gi|297527334|ref|YP_003669358.1| - 8.1 6.3 6.1 27 4.6 0.1 3.8 3 0 0 3 3 3 0 Formate dehydrogenase N, transmembrane DUF447 PF04289.12 gi|297527335|ref|YP_003669359.1| - 1.7e-22 80.1 0.5 2.1e-22 79.8 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) PPR_2 PF13041.6 gi|297527335|ref|YP_003669359.1| - 0.013 15.7 0.9 5.3 7.3 0.3 2.7 3 0 0 3 3 3 0 PPR repeat family MAF_flag10 PF01973.18 gi|297527336|ref|YP_003669360.1| - 1.5e-29 102.9 0.8 2.1e-29 102.4 0.1 1.5 2 0 0 2 2 2 1 Protein of unknown function DUF115 SPA PF08616.10 gi|297527336|ref|YP_003669360.1| - 0.15 12.0 0.4 8.9 6.3 0.0 3.2 2 1 2 4 4 4 0 Stabilization of polarity axis Flavoprotein PF02441.19 gi|297527337|ref|YP_003669361.1| - 7.8e-17 61.5 0.1 2.1e-16 60.1 0.0 1.6 2 0 0 2 2 2 1 Flavoprotein Fer4 PF00037.27 gi|297527337|ref|YP_003669361.1| - 6.8e-11 41.5 14.1 3.5e-07 29.7 2.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|297527337|ref|YP_003669361.1| - 1e-07 31.7 10.8 0.00033 20.6 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297527337|ref|YP_003669361.1| - 1.7e-06 28.0 22.3 8.2e-05 22.6 10.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|297527337|ref|YP_003669361.1| - 1.7e-05 24.8 16.5 2.9e-05 24.1 16.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297527337|ref|YP_003669361.1| - 3e-05 23.8 8.9 0.0042 17.1 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|297527337|ref|YP_003669361.1| - 4.6e-05 23.5 11.7 5.9e-05 23.1 11.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297527337|ref|YP_003669361.1| - 0.00017 22.5 9.5 0.0018 19.2 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|297527337|ref|YP_003669361.1| - 0.00021 21.8 14.6 0.0013 19.2 13.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|297527337|ref|YP_003669361.1| - 0.027 14.9 8.5 0.078 13.4 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|297527337|ref|YP_003669361.1| - 0.62 10.7 10.7 2.2 8.9 2.0 2.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|297527337|ref|YP_003669361.1| - 1.3 9.8 13.0 2.8 8.7 4.0 3.0 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|297527337|ref|YP_003669361.1| - 3.8 8.3 20.1 0.1 13.2 5.0 3.0 3 1 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|297527337|ref|YP_003669361.1| - 9.9 6.8 15.4 1 10.0 4.1 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF1464 PF07318.12 gi|297527338|ref|YP_003669362.1| - 4.5e-98 328.4 2.7 5.1e-98 328.3 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) DUF1846 PF08903.11 gi|297527338|ref|YP_003669362.1| - 0.13 10.7 0.1 0.2 10.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) betaPIX_CC PF16523.5 gi|297527338|ref|YP_003669362.1| - 0.22 11.4 0.7 0.57 10.0 0.7 1.6 1 0 0 1 1 1 0 betaPIX coiled coil GCHY-1 PF02649.14 gi|297527339|ref|YP_003669363.1| - 7.1e-58 196.1 0.0 8e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|297527339|ref|YP_003669363.1| - 0.0084 16.7 0.3 0.025 15.1 0.1 1.9 2 0 0 2 2 2 1 Dihydroneopterin aldolase RmlD_sub_bind PF04321.17 gi|297527339|ref|YP_003669363.1| - 0.033 13.3 0.0 0.065 12.3 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain PTPS PF01242.19 gi|297527340|ref|YP_003669364.1| - 1e-27 96.5 0.0 1.3e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF1108 PF06531.11 gi|297527340|ref|YP_003669364.1| - 0.0046 17.2 2.6 1.4 9.2 0.4 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1108) 2-Hacid_dh PF00389.30 gi|297527340|ref|YP_003669364.1| - 0.021 14.5 0.9 2.4 7.8 0.1 2.1 1 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GHMP_kinases_C PF08544.13 gi|297527341|ref|YP_003669365.1| - 2.9e-07 30.8 0.0 6.9e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|297527341|ref|YP_003669365.1| - 0.073 13.3 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 GHMP kinases N terminal domain DUF4346 PF14251.6 gi|297527342|ref|YP_003669366.1| - 1.8e-08 34.4 0.2 8.2e-07 29.1 0.1 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Pterin_bind PF00809.22 gi|297527342|ref|YP_003669366.1| - 7e-07 29.2 0.0 3.9e-06 26.7 0.0 2.2 1 1 0 1 1 1 1 Pterin binding enzyme tRNA-synt_2c PF01411.19 gi|297527343|ref|YP_003669367.1| - 8.8e-97 324.9 0.6 3.5e-95 319.6 0.6 2.1 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|297527343|ref|YP_003669367.1| - 1.9e-12 47.1 0.1 4.2e-12 46.0 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|297527343|ref|YP_003669367.1| - 5.6e-05 22.5 0.1 0.00011 21.6 0.1 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit DHHA1 PF02272.19 gi|297527343|ref|YP_003669367.1| - 0.00032 21.1 0.3 0.0012 19.3 0.2 2.0 1 1 0 1 1 1 1 DHHA1 domain Zn-ribbon_8 PF09723.10 gi|297527343|ref|YP_003669367.1| - 0.29 11.3 1.4 0.56 10.4 1.4 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Ribosomal_60s PF00428.19 gi|297527344|ref|YP_003669368.1| - 1.4e-19 70.4 19.0 1.8e-19 70.1 19.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|297527344|ref|YP_003669368.1| - 0.00096 19.1 5.3 0.2 11.7 0.1 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain EF-hand_14 PF17959.1 gi|297527344|ref|YP_003669368.1| - 0.011 16.0 0.7 0.033 14.5 0.0 1.9 2 0 0 2 2 2 0 EF-hand domain DUF2722 PF10846.8 gi|297527344|ref|YP_003669368.1| - 0.046 12.7 0.7 0.054 12.4 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2722) DUF740 PF05340.12 gi|297527344|ref|YP_003669368.1| - 0.1 11.3 1.3 0.11 11.2 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF740) Type2_restr_D3 PF16902.5 gi|297527344|ref|YP_003669368.1| - 0.11 12.5 0.1 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain PBP_sp32 PF07222.12 gi|297527344|ref|YP_003669368.1| - 0.17 11.3 3.2 0.18 11.2 3.2 1.2 1 0 0 1 1 1 0 Proacrosin binding protein sp32 PhetRS_B1 PF18262.1 gi|297527344|ref|YP_003669368.1| - 0.34 11.2 0.0 0.34 11.2 0.0 2.0 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain Cytomega_UL84 PF06284.11 gi|297527344|ref|YP_003669368.1| - 1.7 7.0 4.5 1.8 6.9 4.5 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein DUF1840 PF08895.11 gi|297527344|ref|YP_003669368.1| - 8.7 6.7 9.6 14 6.1 9.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1840) Ribosomal_L10 PF00466.20 gi|297527345|ref|YP_003669369.1| - 1.8e-25 88.9 0.5 5.1e-25 87.5 0.5 1.7 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|297527345|ref|YP_003669369.1| - 9.4e-22 76.8 0.2 2.7e-21 75.3 0.2 1.8 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|297527345|ref|YP_003669369.1| - 0.0085 16.7 5.3 0.021 15.4 5.3 1.8 1 0 0 1 1 1 1 60s Acidic ribosomal protein MPP6 PF10175.9 gi|297527345|ref|YP_003669369.1| - 0.089 13.3 2.6 0.18 12.3 2.6 1.4 1 0 0 1 1 1 0 M-phase phosphoprotein 6 RBD PF02196.15 gi|297527345|ref|YP_003669369.1| - 0.16 12.1 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 Raf-like Ras-binding domain Ribosomal_L1 PF00687.21 gi|297527346|ref|YP_003669370.1| - 2.5e-40 138.4 0.0 3.1e-40 138.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|297527347|ref|YP_003669371.1| - 4.4e-24 84.1 0.7 1.1e-23 82.8 0.7 1.7 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|297527347|ref|YP_003669371.1| - 5.1e-18 65.3 1.4 9.2e-18 64.5 1.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|297527348|ref|YP_003669372.1| - 1.3e-20 73.0 0.0 2.4e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|297527348|ref|YP_003669372.1| - 9.1e-08 31.8 0.7 2.6e-07 30.3 0.1 2.0 2 0 0 2 2 2 1 KOW motif SecE PF00584.20 gi|297527349|ref|YP_003669373.1| - 3.2e-05 23.7 0.4 3.9e-05 23.5 0.4 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex SRP54 PF00448.22 gi|297527350|ref|YP_003669374.1| - 7.7e-73 244.3 0.1 1.2e-72 243.7 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|297527350|ref|YP_003669374.1| - 4.1e-05 23.5 1.0 0.13 12.1 0.0 2.5 1 1 1 2 2 2 2 NTPase SRP54_N PF02881.19 gi|297527350|ref|YP_003669374.1| - 6e-05 23.2 3.3 6e-05 23.2 3.3 2.1 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_24 PF13479.6 gi|297527350|ref|YP_003669374.1| - 6.7e-05 22.7 0.0 0.00017 21.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|297527350|ref|YP_003669374.1| - 7.3e-05 22.4 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|297527350|ref|YP_003669374.1| - 0.00013 21.0 1.0 0.00049 19.2 0.5 2.1 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|297527350|ref|YP_003669374.1| - 0.00023 21.0 0.1 0.00035 20.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|297527350|ref|YP_003669374.1| - 0.00025 20.3 0.7 0.052 12.7 0.1 2.7 3 0 0 3 3 3 1 Anion-transporting ATPase CbiA PF01656.23 gi|297527350|ref|YP_003669374.1| - 0.0004 20.5 2.2 0.0064 16.6 0.1 2.8 3 0 0 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|297527350|ref|YP_003669374.1| - 0.0013 18.7 0.2 0.04 13.8 0.1 2.8 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|297527350|ref|YP_003669374.1| - 0.0035 17.8 0.0 0.011 16.1 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|297527350|ref|YP_003669374.1| - 0.0089 16.4 1.5 0.018 15.5 0.1 2.2 2 2 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|297527350|ref|YP_003669374.1| - 0.012 15.7 0.1 0.028 14.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|297527350|ref|YP_003669374.1| - 0.015 15.7 0.9 0.04 14.3 0.2 2.0 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|297527350|ref|YP_003669374.1| - 0.05 13.9 0.1 0.097 13.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|297527350|ref|YP_003669374.1| - 0.062 12.6 0.0 0.14 11.4 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|297527350|ref|YP_003669374.1| - 0.1 12.8 0.7 1.2 9.4 0.4 2.6 2 1 0 2 2 2 0 AAA domain MukF_C PF17193.4 gi|297527350|ref|YP_003669374.1| - 0.11 12.6 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 MukF C-terminal domain MMR_HSR1 PF01926.23 gi|297527350|ref|YP_003669374.1| - 0.31 11.2 3.9 0.62 10.2 1.5 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase Prefoldin PF02996.17 gi|297527351|ref|YP_003669375.1| - 1.4e-14 54.1 0.8 1.9e-14 53.6 0.5 1.4 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|297527351|ref|YP_003669375.1| - 2.9e-06 27.2 5.6 0.00053 19.9 0.9 2.4 2 1 0 2 2 2 2 Prefoldin subunit LRR_8 PF13855.6 gi|297527351|ref|YP_003669375.1| - 0.0028 17.4 0.2 0.0067 16.2 0.2 1.6 1 0 0 1 1 1 1 Leucine rich repeat DUF1216 PF06746.11 gi|297527351|ref|YP_003669375.1| - 0.045 13.7 2.1 1 9.4 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1216) Syntaxin-6_N PF09177.11 gi|297527351|ref|YP_003669375.1| - 0.065 13.8 4.2 0.31 11.6 4.2 2.0 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Tup_N PF08581.10 gi|297527351|ref|YP_003669375.1| - 0.066 13.5 5.8 0.42 11.0 0.3 2.4 2 0 0 2 2 2 0 Tup N-terminal NPV_P10 PF05531.12 gi|297527351|ref|YP_003669375.1| - 0.075 13.5 3.5 2.4 8.7 0.3 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein GAS PF13851.6 gi|297527351|ref|YP_003669375.1| - 0.079 12.3 8.1 0.49 9.7 0.8 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Sec34 PF04136.15 gi|297527351|ref|YP_003669375.1| - 0.1 12.4 5.6 1.3 8.9 0.3 2.1 2 0 0 2 2 2 0 Sec34-like family Nod1 PF17114.5 gi|297527351|ref|YP_003669375.1| - 0.13 12.4 2.0 5.3 7.2 0.1 2.1 2 0 0 2 2 2 0 Gef2-related medial cortical node protein Nod1 BLOC1_2 PF10046.9 gi|297527351|ref|YP_003669375.1| - 0.17 12.2 6.3 2.2 8.6 0.4 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CLZ PF16526.5 gi|297527351|ref|YP_003669375.1| - 0.24 11.8 4.7 6.9 7.1 0.1 2.5 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF948 PF06103.11 gi|297527351|ref|YP_003669375.1| - 0.44 10.8 3.5 3.9 7.8 0.6 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) YabA PF06156.13 gi|297527351|ref|YP_003669375.1| - 0.44 11.2 3.7 9.8 6.9 0.4 2.1 2 0 0 2 2 2 0 Initiation control protein YabA JIP_LZII PF16471.5 gi|297527351|ref|YP_003669375.1| - 1.1 9.4 6.2 8.5 6.6 2.7 2.3 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II HAUS-augmin3 PF14932.6 gi|297527351|ref|YP_003669375.1| - 2.3 7.7 9.3 3.6 7.1 2.0 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 Fib_alpha PF08702.10 gi|297527351|ref|YP_003669375.1| - 3.2 7.9 9.4 4.7 7.4 1.7 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Ribosomal_L18A PF01775.17 gi|297527352|ref|YP_003669376.1| - 2e-14 53.7 0.5 2.7e-14 53.3 0.5 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DUF5615 PF18480.1 gi|297527352|ref|YP_003669376.1| - 0.055 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) SopD PF11047.8 gi|297527352|ref|YP_003669376.1| - 0.077 12.2 0.1 0.077 12.2 0.1 1.0 1 0 0 1 1 1 0 Salmonella outer protein D eIF-6 PF01912.18 gi|297527353|ref|YP_003669377.1| - 6.6e-64 214.9 4.0 7.6e-64 214.7 4.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|297527354|ref|YP_003669378.1| - 1.5e-11 44.3 2.0 2e-11 44.0 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|297527355|ref|YP_003669379.1| - 2.4e-17 62.3 8.8 3e-17 62.0 8.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.20 gi|297527356|ref|YP_003669380.1| - 2.9e-23 82.2 7.0 4.5e-23 81.7 7.0 1.3 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|297527356|ref|YP_003669380.1| - 0.00015 21.1 3.9 0.00018 20.9 3.9 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 NCKAP5 PF15246.6 gi|297527356|ref|YP_003669380.1| - 0.031 13.9 0.2 0.039 13.6 0.2 1.0 1 0 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein betaPIX_CC PF16523.5 gi|297527356|ref|YP_003669380.1| - 0.051 13.4 4.3 0.14 12.0 3.3 2.0 2 0 0 2 2 2 0 betaPIX coiled coil Ribosomal_S19e PF01090.19 gi|297527357|ref|YP_003669381.1| - 3.3e-53 179.1 0.0 3.8e-53 178.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|297527357|ref|YP_003669381.1| - 0.0011 18.9 0.2 0.022 14.7 0.2 2.2 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain SASP PF00269.20 gi|297527357|ref|YP_003669381.1| - 0.028 14.4 0.1 3.6 7.7 0.0 2.3 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type CRS1_YhbY PF01985.21 gi|297527358|ref|YP_003669382.1| - 1.3e-10 41.3 0.8 1.7e-10 40.9 0.8 1.3 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.16 gi|297527359|ref|YP_003669383.1| - 1.2e-16 60.7 0.0 1.7e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Fis1_TPR_C PF14853.6 gi|297527359|ref|YP_003669383.1| - 0.0033 17.5 1.6 0.0057 16.7 1.6 1.4 1 0 0 1 1 1 1 Fis1 C-terminal tetratricopeptide repeat MBD PF01429.19 gi|297527359|ref|YP_003669383.1| - 0.017 14.8 0.1 0.037 13.7 0.1 1.5 1 0 0 1 1 1 0 Methyl-CpG binding domain TPR_2 PF07719.17 gi|297527359|ref|YP_003669383.1| - 0.13 12.5 0.8 0.27 11.5 0.8 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat EMG1 PF03587.14 gi|297527360|ref|YP_003669384.1| - 5.7e-56 189.3 0.0 6.4e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase RecA PF00154.21 gi|297527360|ref|YP_003669384.1| - 0.057 12.9 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NRDD PF13597.6 gi|297527361|ref|YP_003669385.1| - 4.1e-151 504.5 0.0 4.9e-151 504.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|297527361|ref|YP_003669385.1| - 0.00063 19.7 0.1 0.0013 18.7 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|297527361|ref|YP_003669385.1| - 0.026 14.2 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|297527361|ref|YP_003669385.1| - 0.054 13.6 1.2 0.13 12.4 1.2 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|297527361|ref|YP_003669385.1| - 0.085 12.6 4.0 0.21 11.3 4.0 1.7 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|297527361|ref|YP_003669385.1| - 0.14 12.0 1.9 0.3 11.0 1.9 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Radical_SAM PF04055.21 gi|297527362|ref|YP_003669386.1| - 1e-14 55.3 0.0 1.9e-14 54.4 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|297527362|ref|YP_003669386.1| - 3.1e-10 40.2 0.3 6.5e-10 39.2 0.3 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|297527362|ref|YP_003669386.1| - 5.2e-09 36.5 0.1 8.5e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ferritin PF00210.24 gi|297527362|ref|YP_003669386.1| - 0.05 13.5 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 Ferritin-like domain DUF4489 PF14879.6 gi|297527362|ref|YP_003669386.1| - 0.096 12.8 0.1 0.22 11.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4489) Thy1 PF02511.15 gi|297527363|ref|YP_003669387.1| - 4.4e-59 199.5 0.3 6.1e-59 199.0 0.3 1.2 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DUF2828 PF11443.8 gi|297527363|ref|YP_003669387.1| - 0.13 10.4 0.2 0.2 9.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) HTH_36 PF13730.6 gi|297527363|ref|YP_003669387.1| - 0.48 10.4 2.5 30 4.7 0.0 3.2 4 1 0 4 4 4 0 Helix-turn-helix domain dUTPase PF00692.19 gi|297527364|ref|YP_003669388.1| - 2.4e-13 49.9 0.0 3.4e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|297527364|ref|YP_003669388.1| - 0.018 13.8 0.0 0.044 12.6 0.0 1.6 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) MFS_1 PF07690.16 gi|297527365|ref|YP_003669389.1| - 1.4e-39 136.0 38.4 2.1e-25 89.4 20.6 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|297527365|ref|YP_003669389.1| - 9.4e-32 110.4 18.5 1.9e-31 109.4 18.5 1.4 1 1 0 1 1 1 1 Sugar (and other) transporter BT1 PF03092.16 gi|297527365|ref|YP_003669389.1| - 0.27 9.4 5.3 0.075 11.3 1.7 1.9 2 0 0 2 2 2 0 BT1 family SfsA PF03749.13 gi|297527366|ref|YP_003669390.1| - 7.1e-29 100.5 0.0 1.2e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|297527366|ref|YP_003669390.1| - 2.2e-14 53.3 0.5 3.9e-14 52.5 0.5 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain FA_desaturase_2 PF03405.14 gi|297527367|ref|YP_003669391.1| - 1.6e-05 23.9 0.3 0.026 13.4 0.0 2.2 1 1 1 2 2 2 2 Fatty acid desaturase Rubrerythrin PF02915.17 gi|297527367|ref|YP_003669391.1| - 0.00061 20.2 13.1 0.036 14.4 13.1 2.9 1 1 0 1 1 1 1 Rubrerythrin FCH PF00611.23 gi|297527367|ref|YP_003669391.1| - 0.00081 19.6 5.0 0.0016 18.7 5.0 1.9 1 1 0 1 1 1 1 Fes/CIP4, and EFC/F-BAR homology domain RhoGEF PF00621.20 gi|297527367|ref|YP_003669391.1| - 0.049 13.9 2.8 0.079 13.2 2.8 1.4 1 1 0 1 1 1 0 RhoGEF domain Colicin_Pyocin PF01320.18 gi|297527367|ref|YP_003669391.1| - 0.19 11.9 3.5 0.38 10.9 1.3 2.1 2 0 0 2 2 2 0 Colicin immunity protein / pyocin immunity protein HBS1_N PF08938.10 gi|297527367|ref|YP_003669391.1| - 2.3 8.6 5.3 0.52 10.7 1.5 2.0 2 1 0 2 2 2 0 HBS1 N-terminus Rubrerythrin PF02915.17 gi|297527368|ref|YP_003669392.1| - 3.1e-10 40.6 0.7 3.8e-10 40.3 0.7 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|297527368|ref|YP_003669392.1| - 4.5e-05 23.7 0.3 5.7e-05 23.4 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|297527368|ref|YP_003669392.1| - 0.0041 17.1 0.3 0.0051 16.8 0.3 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF4835 PF16119.5 gi|297527368|ref|YP_003669392.1| - 0.053 12.6 0.4 0.062 12.4 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4835) CcmD PF04995.14 gi|297527369|ref|YP_003669393.1| - 5.9 7.1 6.8 3.8 7.7 1.1 2.5 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) ADH_N PF08240.12 gi|297527370|ref|YP_003669394.1| - 1.6e-33 114.9 0.8 2.8e-33 114.0 0.8 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|297527370|ref|YP_003669394.1| - 6.9e-09 35.8 0.0 1.3e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|297527370|ref|YP_003669394.1| - 0.00036 21.6 0.0 0.00057 21.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Fer4_11 PF13247.6 gi|297527371|ref|YP_003669395.1| - 1.5e-20 73.1 9.2 1.5e-20 73.1 9.2 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|297527371|ref|YP_003669395.1| - 2.4e-13 50.5 25.3 2e-06 28.3 11.8 4.0 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|297527371|ref|YP_003669395.1| - 1.3e-12 47.6 56.6 4.6e-07 29.9 9.4 3.4 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.27 gi|297527371|ref|YP_003669395.1| - 1e-10 40.9 42.6 1.6e-05 24.5 3.1 5.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297527371|ref|YP_003669395.1| - 5.4e-10 39.2 29.8 7.6e-06 25.9 11.0 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|297527371|ref|YP_003669395.1| - 8.3e-10 38.3 40.7 0.00013 21.9 2.4 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|297527371|ref|YP_003669395.1| - 4.8e-09 35.8 32.9 0.00015 21.7 1.3 4.3 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|297527371|ref|YP_003669395.1| - 1e-07 32.4 37.8 0.0042 17.9 3.6 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|297527371|ref|YP_003669395.1| - 3.4e-06 27.9 28.0 0.017 16.0 1.4 4.5 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|297527371|ref|YP_003669395.1| - 3.7e-05 24.2 24.7 0.23 12.1 0.2 4.4 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|297527371|ref|YP_003669395.1| - 4.4e-05 23.6 36.5 0.0014 18.9 2.2 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297527371|ref|YP_003669395.1| - 0.00025 21.1 29.2 0.0035 17.4 10.1 3.7 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|297527371|ref|YP_003669395.1| - 0.00047 20.6 28.9 0.054 13.9 9.4 4.1 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|297527371|ref|YP_003669395.1| - 0.047 14.4 19.7 0.16 12.7 1.2 3.9 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|297527371|ref|YP_003669395.1| - 0.57 10.8 25.4 0.43 11.2 3.0 4.3 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|297527371|ref|YP_003669395.1| - 3.1 8.7 20.1 2.2 9.2 0.4 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|297527371|ref|YP_003669395.1| - 4.3 7.6 22.4 0.09 13.0 7.4 3.2 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|297527371|ref|YP_003669395.1| - 9.3 6.1 24.2 0.33 10.7 2.2 4.0 1 1 3 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.14 gi|297527372|ref|YP_003669396.1| - 7.3e-33 114.0 0.1 8.9e-33 113.8 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|297527372|ref|YP_003669396.1| - 5.5e-09 35.7 3.2 3.6e-06 26.5 0.1 2.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|297527372|ref|YP_003669396.1| - 1.1e-07 32.0 1.5 2.7e-06 27.5 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|297527372|ref|YP_003669396.1| - 4.8e-07 30.3 1.3 0.044 14.4 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|297527372|ref|YP_003669396.1| - 2e-06 27.5 2.3 0.0025 17.2 0.0 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|297527372|ref|YP_003669396.1| - 4.4e-06 26.0 0.7 0.11 11.6 0.1 2.9 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|297527372|ref|YP_003669396.1| - 7.8e-06 25.2 1.7 0.15 11.1 0.2 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|297527372|ref|YP_003669396.1| - 1.2e-05 24.7 0.4 0.091 12.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|297527372|ref|YP_003669396.1| - 1.4e-05 24.5 0.1 0.0099 15.2 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|297527372|ref|YP_003669396.1| - 0.00014 20.7 0.8 0.016 14.0 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|297527372|ref|YP_003669396.1| - 0.00015 21.5 1.3 0.18 11.4 0.1 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|297527372|ref|YP_003669396.1| - 0.0011 19.0 0.5 0.023 14.7 0.1 2.7 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|297527372|ref|YP_003669396.1| - 0.0023 17.3 0.1 1 8.7 0.0 3.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|297527372|ref|YP_003669396.1| - 0.025 13.8 0.6 0.29 10.3 0.1 2.2 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|297527372|ref|YP_003669396.1| - 0.065 13.1 2.1 0.86 9.5 0.0 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|297527372|ref|YP_003669396.1| - 0.18 10.9 0.0 0.31 10.1 0.0 1.4 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|297527372|ref|YP_003669396.1| - 0.24 11.4 0.6 5.9 6.9 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding NTP_transferase PF00483.23 gi|297527373|ref|YP_003669397.1| - 1.5e-36 126.3 0.0 1.7e-36 126.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|297527373|ref|YP_003669397.1| - 1.4e-12 48.3 0.0 2e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|297527373|ref|YP_003669397.1| - 0.00039 20.2 0.0 0.00048 19.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peptidase_M54 PF07998.11 gi|297527374|ref|YP_003669398.1| - 1.2e-29 103.7 0.1 1.4e-29 103.5 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|297527374|ref|YP_003669398.1| - 0.00014 21.7 0.0 0.00014 21.7 0.0 1.1 1 0 0 1 1 1 1 Matrixin Peptidase_M43 PF05572.13 gi|297527374|ref|YP_003669398.1| - 0.025 14.5 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Metallopep PF12044.8 gi|297527374|ref|YP_003669398.1| - 0.064 11.9 0.0 0.086 11.4 0.0 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin PF01421.19 gi|297527374|ref|YP_003669398.1| - 0.071 13.0 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Reprolysin_3 PF13582.6 gi|297527374|ref|YP_003669398.1| - 0.12 12.9 0.0 0.24 11.9 0.0 1.7 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|297527374|ref|YP_003669398.1| - 0.15 11.0 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 DUF4953 PF16313.5 gi|297527374|ref|YP_003669398.1| - 0.22 10.7 0.1 0.35 10.1 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Archease PF01951.16 gi|297527375|ref|YP_003669399.1| - 1.6e-42 145.0 0.2 1.8e-42 144.8 0.2 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) RuBisCO_large PF00016.20 gi|297527376|ref|YP_003669400.1| - 3e-102 341.8 0.0 3.7e-102 341.6 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|297527376|ref|YP_003669400.1| - 8.6e-47 158.2 0.0 1.4e-46 157.5 0.0 1.4 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF697 PF05128.12 gi|297527376|ref|YP_003669400.1| - 0.038 13.7 0.2 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF697) LigA PF07746.11 gi|297527376|ref|YP_003669400.1| - 0.083 13.1 0.0 0.3 11.2 0.0 1.9 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit PAP2 PF01569.21 gi|297527377|ref|YP_003669401.1| - 1.8e-15 56.9 4.2 1.8e-15 56.9 4.2 2.9 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|297527377|ref|YP_003669401.1| - 4.1e-10 39.7 1.3 4.1e-10 39.7 1.3 2.3 3 0 0 3 3 3 1 PAP2 superfamily PAP2_C PF14360.6 gi|297527377|ref|YP_003669401.1| - 0.00065 20.2 0.5 0.00065 20.2 0.5 3.1 3 0 0 3 3 3 1 PAP2 superfamily C-terminal DUF212 PF02681.14 gi|297527377|ref|YP_003669401.1| - 0.0007 19.7 0.4 0.16 12.1 0.0 2.5 1 1 1 2 2 2 2 Divergent PAP2 family MTS PF05175.14 gi|297527378|ref|YP_003669402.1| - 2e-34 118.6 0.0 2.2e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|297527378|ref|YP_003669402.1| - 7.1e-15 55.1 0.0 1.3e-14 54.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|297527378|ref|YP_003669402.1| - 1.6e-12 47.5 0.0 1.9e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|297527378|ref|YP_003669402.1| - 4.6e-11 43.3 0.0 6.2e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|297527378|ref|YP_003669402.1| - 6.8e-09 35.8 0.0 8.3e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|297527378|ref|YP_003669402.1| - 9.4e-09 35.3 0.0 1.2e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297527378|ref|YP_003669402.1| - 1.7e-07 31.7 0.0 2.5e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|297527378|ref|YP_003669402.1| - 8.8e-07 28.8 0.0 1.2e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|297527378|ref|YP_003669402.1| - 1.5e-06 28.2 0.0 2.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|297527378|ref|YP_003669402.1| - 2.2e-06 28.3 0.0 3e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|297527378|ref|YP_003669402.1| - 2.1e-05 24.2 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|297527378|ref|YP_003669402.1| - 3e-05 23.7 0.0 3.9e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TRM PF02005.16 gi|297527378|ref|YP_003669402.1| - 0.00034 19.9 0.0 0.00037 19.8 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_4 PF02390.17 gi|297527378|ref|YP_003669402.1| - 0.0011 18.5 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|297527378|ref|YP_003669402.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Ubie_methyltran PF01209.18 gi|297527378|ref|YP_003669402.1| - 0.0016 17.8 0.0 0.002 17.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 gi|297527378|ref|YP_003669402.1| - 0.002 17.8 0.0 0.0028 17.4 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 GidB PF02527.15 gi|297527378|ref|YP_003669402.1| - 0.0032 16.8 0.0 0.0038 16.6 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.19 gi|297527378|ref|YP_003669402.1| - 0.0096 15.7 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_Mtase PF02384.16 gi|297527378|ref|YP_003669402.1| - 0.01 15.1 0.0 0.022 14.0 0.0 1.5 1 1 1 2 2 2 0 N-6 DNA Methylase Methyltransf_3 PF01596.17 gi|297527378|ref|YP_003669402.1| - 0.081 12.1 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.6 gi|297527378|ref|YP_003669402.1| - 0.086 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|297527378|ref|YP_003669402.1| - 0.13 11.5 0.0 0.16 11.2 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase KOW PF00467.29 gi|297527380|ref|YP_003669404.1| - 0.00024 20.9 0.2 0.00045 20.1 0.2 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.17 gi|297527380|ref|YP_003669404.1| - 0.068 13.7 0.0 0.096 13.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L14 Cytidylate_kin2 PF13189.6 gi|297527381|ref|YP_003669405.1| - 1.5e-17 64.3 0.7 3.3e-15 56.7 0.7 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|297527381|ref|YP_003669405.1| - 3.4e-14 53.4 0.0 6.3e-14 52.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|297527381|ref|YP_003669405.1| - 5.1e-13 49.7 0.0 7.4e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|297527381|ref|YP_003669405.1| - 1.1e-10 41.6 0.8 0.00029 20.6 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|297527381|ref|YP_003669405.1| - 1.7e-05 24.9 0.2 8.5e-05 22.7 0.2 2.0 1 1 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.6 gi|297527381|ref|YP_003669405.1| - 0.00087 19.6 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|297527381|ref|YP_003669405.1| - 0.0014 19.1 0.0 0.0022 18.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|297527381|ref|YP_003669405.1| - 0.003 17.5 0.0 0.014 15.3 0.0 1.8 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.6 gi|297527381|ref|YP_003669405.1| - 0.0056 17.0 0.0 0.0082 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|297527381|ref|YP_003669405.1| - 0.0067 16.1 0.0 1 9.0 0.0 2.2 2 0 0 2 2 2 1 Thymidylate kinase KTI12 PF08433.10 gi|297527381|ref|YP_003669405.1| - 0.0091 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|297527381|ref|YP_003669405.1| - 0.014 15.6 0.0 0.072 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|297527381|ref|YP_003669405.1| - 0.028 14.0 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PRK PF00485.18 gi|297527381|ref|YP_003669405.1| - 0.053 13.3 0.3 1.5 8.5 0.0 2.2 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.12 gi|297527381|ref|YP_003669405.1| - 0.071 12.9 0.1 0.52 10.0 0.0 2.1 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|297527381|ref|YP_003669405.1| - 0.1 12.6 0.0 0.27 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|297527381|ref|YP_003669405.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|297527381|ref|YP_003669405.1| - 0.19 12.1 0.0 0.2 12.0 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain Ribosomal_L34e PF01199.18 gi|297527382|ref|YP_003669406.1| - 4.3e-25 87.9 1.4 4.7e-25 87.7 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e zf-C4_ClpX PF06689.13 gi|297527382|ref|YP_003669406.1| - 0.0021 17.9 0.2 0.025 14.4 0.2 2.1 1 1 0 1 1 1 1 ClpX C4-type zinc finger DUF4428 PF14471.6 gi|297527382|ref|YP_003669406.1| - 0.015 15.2 0.1 0.93 9.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-P11 PF03854.14 gi|297527382|ref|YP_003669406.1| - 0.016 14.9 1.2 0.86 9.3 0.1 2.2 2 0 0 2 2 2 0 P-11 zinc finger DZR PF12773.7 gi|297527382|ref|YP_003669406.1| - 0.028 14.4 0.1 0.044 13.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|297527382|ref|YP_003669406.1| - 0.092 12.7 3.9 2.6 8.0 0.2 2.3 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Gin PF10764.9 gi|297527382|ref|YP_003669406.1| - 0.14 12.1 0.1 2 8.4 0.0 2.1 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin zf-HIT PF04438.16 gi|297527382|ref|YP_003669406.1| - 0.15 11.9 2.7 2.6 8.0 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger LPG_synthase_TM PF03706.13 gi|297527383|ref|YP_003669407.1| - 0.13 11.8 5.9 0.035 13.6 2.8 1.5 1 1 0 1 1 1 0 Lysylphosphatidylglycerol synthase TM region SecY PF00344.20 gi|297527384|ref|YP_003669408.1| - 3.4e-60 203.9 18.3 3.4e-60 203.9 18.3 1.4 2 0 0 2 2 2 1 SecY translocase Plug_translocon PF10559.9 gi|297527384|ref|YP_003669408.1| - 3.9e-09 36.2 0.7 1.3e-08 34.5 0.7 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p DUF5572 PF17733.1 gi|297527384|ref|YP_003669408.1| - 0.19 11.6 0.1 0.42 10.5 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5572) Ribosomal_L27A PF00828.19 gi|297527385|ref|YP_003669409.1| - 4.1e-19 69.5 0.1 5.5e-19 69.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|297527386|ref|YP_003669410.1| - 8.6e-13 48.0 0.0 1.7e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 gi|297527387|ref|YP_003669411.1| - 1.1e-24 85.6 0.3 2.2e-24 84.7 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|297527387|ref|YP_003669411.1| - 1.7e-22 79.2 4.3 1.1e-21 76.6 0.9 2.9 3 0 0 3 3 3 1 Ribosomal protein S5, N-terminal domain FaeA PF04703.12 gi|297527387|ref|YP_003669411.1| - 0.15 12.4 0.1 0.29 11.5 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein Ribosomal_L5e PF17144.4 gi|297527388|ref|YP_003669412.1| - 5.4e-30 104.5 1.4 4.7e-23 82.0 0.4 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|297527388|ref|YP_003669412.1| - 6.1e-09 36.7 0.3 1.3e-08 35.6 0.0 1.7 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|297527388|ref|YP_003669412.1| - 1.9e-05 25.0 0.0 2.6e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|297527389|ref|YP_003669413.1| - 5e-56 188.8 13.2 5.6e-56 188.6 13.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HSR PF03172.13 gi|297527389|ref|YP_003669413.1| - 0.056 13.6 0.0 0.094 12.9 0.0 1.4 1 0 0 1 1 1 0 HSR domain Ribosomal_L32e PF01655.18 gi|297527390|ref|YP_003669414.1| - 4.7e-34 117.1 0.0 6.3e-34 116.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|297527391|ref|YP_003669415.1| - 3.3e-23 82.1 14.1 4.2e-15 56.2 3.0 2.2 1 1 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|297527392|ref|YP_003669416.1| - 3.1e-26 91.8 0.0 4.9e-26 91.2 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein S8 SPATA6 PF14909.6 gi|297527392|ref|YP_003669416.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Spermatogenesis-assoc protein 6 Ribosomal_S14 PF00253.21 gi|297527393|ref|YP_003669417.1| - 1.6e-11 43.7 2.3 1.8e-11 43.6 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|297527393|ref|YP_003669417.1| - 0.0019 18.0 1.6 0.0025 17.6 1.6 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|297527393|ref|YP_003669417.1| - 0.0093 16.0 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon Gin PF10764.9 gi|297527393|ref|YP_003669417.1| - 0.034 14.1 0.3 0.049 13.6 0.3 1.3 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin Ribosomal_L5_C PF00673.21 gi|297527394|ref|YP_003669418.1| - 3.1e-27 94.6 0.0 6.6e-27 93.5 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|297527394|ref|YP_003669418.1| - 1.5e-20 73.3 0.1 2.8e-20 72.4 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 UPF0147 PF03685.13 gi|297527394|ref|YP_003669418.1| - 0.0034 17.4 0.1 0.0094 16.0 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0147) Ribosomal_S4e PF00900.20 gi|297527395|ref|YP_003669419.1| - 1.5e-24 85.7 0.6 2.6e-24 84.9 0.6 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|297527395|ref|YP_003669419.1| - 2.4e-18 65.9 5.7 5.2e-18 64.9 5.7 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|297527395|ref|YP_003669419.1| - 1.6e-15 56.5 0.2 1.1e-14 53.8 0.1 2.3 2 0 0 2 2 2 1 S4 domain 40S_S4_C PF16121.5 gi|297527395|ref|YP_003669419.1| - 9.4e-05 22.0 0.0 0.00021 20.8 0.0 1.6 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|297527395|ref|YP_003669419.1| - 0.0054 16.7 2.2 0.015 15.2 2.2 1.9 1 0 0 1 1 1 1 KOW motif Ribosomal_L26 PF16906.5 gi|297527396|ref|YP_003669420.1| - 8.1e-36 122.4 0.8 1.1e-35 121.9 0.8 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|297527396|ref|YP_003669420.1| - 3.4e-06 26.8 0.6 6.9e-06 25.8 0.6 1.6 1 0 0 1 1 1 1 KOW motif SH3_2 PF07653.17 gi|297527396|ref|YP_003669420.1| - 0.028 14.1 0.4 0.26 11.0 0.4 2.1 1 1 0 1 1 1 0 Variant SH3 domain Ribosomal_L14 PF00238.19 gi|297527397|ref|YP_003669421.1| - 5.5e-36 123.3 0.1 6.2e-36 123.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|297527398|ref|YP_003669422.1| - 1.6e-27 95.3 3.5 2.1e-27 95.0 3.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|297527398|ref|YP_003669422.1| - 0.00024 21.4 0.6 0.0004 20.7 0.1 1.6 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|297527398|ref|YP_003669422.1| - 0.13 12.0 1.2 0.25 11.1 1.2 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain UPF0086 PF01868.16 gi|297527399|ref|YP_003669423.1| - 1.5e-19 69.7 0.1 1.7e-19 69.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|297527400|ref|YP_003669424.1| - 3.3e-19 68.6 9.2 4.1e-19 68.3 9.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein IFT57 PF10498.9 gi|297527400|ref|YP_003669424.1| - 0.082 11.9 0.9 0.09 11.7 0.9 1.0 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Ribosomal_S3_C PF00189.20 gi|297527401|ref|YP_003669425.1| - 5e-21 75.0 3.6 8.8e-21 74.2 3.6 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|297527401|ref|YP_003669425.1| - 7.8e-10 38.5 0.0 1.7e-09 37.3 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|297527401|ref|YP_003669425.1| - 0.0047 16.7 2.5 0.012 15.4 1.1 2.5 2 1 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|297527401|ref|YP_003669425.1| - 0.041 13.8 0.0 0.096 12.6 0.0 1.7 1 0 0 1 1 1 0 KH domain Ribosomal_L22 PF00237.19 gi|297527402|ref|YP_003669426.1| - 3.5e-30 104.3 0.2 4.4e-30 104.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|297527403|ref|YP_003669427.1| - 9.6e-36 121.5 0.6 1.3e-35 121.1 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|297527403|ref|YP_003669427.1| - 0.02 15.4 0.6 0.034 14.7 0.6 1.3 1 0 0 1 1 1 0 bZIP Maf transcription factor VWA_CoxE PF05762.14 gi|297527404|ref|YP_003669428.1| - 1.2e-05 24.9 0.1 2.7e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|297527404|ref|YP_003669428.1| - 0.035 14.7 0.0 0.15 12.8 0.0 2.1 1 1 0 1 1 1 0 von Willebrand factor type A domain AAA_5 PF07728.14 gi|297527405|ref|YP_003669429.1| - 2.5e-17 63.2 0.0 3.8e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|297527405|ref|YP_003669429.1| - 0.00062 19.6 0.0 0.0035 17.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|297527405|ref|YP_003669429.1| - 0.00077 19.9 0.2 0.004 17.6 0.1 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|297527405|ref|YP_003669429.1| - 0.0085 15.8 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|297527405|ref|YP_003669429.1| - 0.021 14.4 0.0 0.1 12.1 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|297527405|ref|YP_003669429.1| - 0.022 14.4 0.0 5.9 6.6 0.0 2.4 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|297527405|ref|YP_003669429.1| - 0.033 14.7 0.0 0.066 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|297527405|ref|YP_003669429.1| - 0.062 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.6 gi|297527405|ref|YP_003669429.1| - 0.067 13.5 0.1 0.69 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|297527405|ref|YP_003669429.1| - 0.11 11.8 0.0 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_6 PF12774.7 gi|297527405|ref|YP_003669429.1| - 0.14 11.1 0.0 0.28 10.1 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_11 PF13086.6 gi|297527405|ref|YP_003669429.1| - 0.22 11.3 0.0 0.78 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain Ribosomal_L2_C PF03947.18 gi|297527407|ref|YP_003669431.1| - 4.1e-45 153.0 4.3 6e-45 152.5 4.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|297527407|ref|YP_003669431.1| - 3.7e-16 58.8 0.0 1.1e-15 57.3 0.0 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|297527408|ref|YP_003669432.1| - 1.7e-18 66.7 2.5 1.7e-17 63.5 2.5 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|297527408|ref|YP_003669432.1| - 0.069 13.0 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Sulfurtransferase TusA Ribosomal_L4 PF00573.22 gi|297527409|ref|YP_003669433.1| - 1.1e-40 139.4 0.0 1.3e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Autoind_bind PF03472.15 gi|297527409|ref|YP_003669433.1| - 0.11 11.9 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 Autoinducer binding domain Titin_Z PF09042.11 gi|297527409|ref|YP_003669433.1| - 0.25 11.3 1.7 0.4 10.7 0.5 2.0 2 0 0 2 2 2 0 Titin Z Ribosomal_L3 PF00297.22 gi|297527410|ref|YP_003669434.1| - 2.9e-70 237.1 1.0 2.3e-68 230.8 1.0 2.8 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|297527411|ref|YP_003669435.1| - 2.2e-44 152.1 0.0 2.5e-44 151.9 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF853 PF05872.12 gi|297527413|ref|YP_003669437.1| - 1.5e-12 46.9 0.0 2.7e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|297527413|ref|YP_003669437.1| - 1.5e-08 35.1 1.7 3.1e-08 34.0 0.1 2.1 2 0 0 2 2 2 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|297527413|ref|YP_003669437.1| - 2.6e-07 29.9 0.0 0.001 18.1 0.0 2.4 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|297527413|ref|YP_003669437.1| - 3.6e-07 29.4 0.0 6e-05 22.1 0.0 2.4 2 0 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|297527413|ref|YP_003669437.1| - 0.00024 20.5 0.0 0.00045 19.7 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|297527413|ref|YP_003669437.1| - 0.00051 20.3 0.1 1 9.6 0.1 2.8 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|297527413|ref|YP_003669437.1| - 0.00087 19.8 0.1 0.076 13.5 0.1 2.6 2 0 0 2 2 2 1 ABC transporter TraG-D_C PF12696.7 gi|297527413|ref|YP_003669437.1| - 0.00092 19.2 0.0 0.0026 17.8 0.0 1.7 1 1 0 1 1 1 1 TraM recognition site of TraD and TraG ATPase_2 PF01637.18 gi|297527413|ref|YP_003669437.1| - 0.0019 18.1 0.1 0.029 14.3 0.0 2.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|297527413|ref|YP_003669437.1| - 0.016 15.7 0.2 2.5 8.5 0.2 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|297527413|ref|YP_003669437.1| - 0.04 14.0 0.0 2.4 8.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|297527413|ref|YP_003669437.1| - 0.041 13.9 0.0 0.61 10.1 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_23 PF13476.6 gi|297527413|ref|YP_003669437.1| - 0.042 14.4 1.5 0.093 13.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|297527413|ref|YP_003669437.1| - 0.045 12.8 0.1 0.09 11.8 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|297527413|ref|YP_003669437.1| - 0.046 13.4 0.0 3 7.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|297527413|ref|YP_003669437.1| - 0.047 13.4 0.1 0.32 10.7 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|297527413|ref|YP_003669437.1| - 0.069 12.7 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|297527413|ref|YP_003669437.1| - 0.097 12.4 0.1 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|297527413|ref|YP_003669437.1| - 0.11 12.9 0.0 0.87 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|297527413|ref|YP_003669437.1| - 0.15 12.0 1.4 0.25 11.3 0.1 2.0 3 0 0 3 3 3 0 NACHT domain Pkr1 PF08636.10 gi|297527414|ref|YP_003669438.1| - 0.056 13.6 5.7 0.066 13.4 5.7 1.1 1 0 0 1 1 1 0 ER protein Pkr1 Trep_Strep PF09605.10 gi|297527416|ref|YP_003669440.1| - 0.078 13.0 5.1 0.1 12.6 5.1 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF3810 PF12725.7 gi|297527416|ref|YP_003669440.1| - 0.13 11.6 1.1 0.13 11.5 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) COX2-transmemb PF09125.10 gi|297527416|ref|YP_003669440.1| - 4.8 7.0 8.6 0.32 10.8 3.8 1.6 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane PAPS_reduct PF01507.19 gi|297527417|ref|YP_003669441.1| - 6.5e-38 130.5 0.0 1.4e-37 129.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_21 PF14697.6 gi|297527417|ref|YP_003669441.1| - 1.7e-05 24.8 8.9 4.1e-05 23.6 8.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|297527417|ref|YP_003669441.1| - 3.7e-05 24.1 1.0 0.19 12.2 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|297527417|ref|YP_003669441.1| - 0.0004 20.5 8.6 0.0018 18.4 8.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297527417|ref|YP_003669441.1| - 0.00052 20.9 11.1 0.21 12.6 0.7 3.3 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|297527417|ref|YP_003669441.1| - 0.0007 20.1 2.9 0.75 10.4 0.2 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|297527417|ref|YP_003669441.1| - 0.0041 17.7 10.6 0.0083 16.7 8.4 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|297527417|ref|YP_003669441.1| - 0.01 15.9 11.8 0.11 12.6 12.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain NAD_synthase PF02540.17 gi|297527417|ref|YP_003669441.1| - 0.14 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Fer4 PF00037.27 gi|297527417|ref|YP_003669441.1| - 0.93 9.4 15.8 0.31 10.9 4.9 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|297527417|ref|YP_003669441.1| - 1.6 9.6 6.3 8.4 7.3 0.1 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain ID PF18543.1 gi|297527417|ref|YP_003669441.1| - 2.2 8.4 4.5 1.3 9.1 0.4 2.7 2 1 1 3 3 3 0 Intracellular delivery domain Fer4_6 PF12837.7 gi|297527417|ref|YP_003669441.1| - 5.4 7.3 13.5 0.73 10.0 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|297527417|ref|YP_003669441.1| - 8.6 7.2 13.1 5.1 7.9 1.0 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain DEAD PF00270.29 gi|297527418|ref|YP_003669442.1| - 1.1e-25 90.4 0.0 3.1e-25 88.9 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|297527418|ref|YP_003669442.1| - 1.4e-21 76.9 1.5 1.1e-19 70.8 0.2 3.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|297527418|ref|YP_003669442.1| - 1.7e-09 37.9 0.7 6.5e-09 36.0 0.1 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.11 gi|297527418|ref|YP_003669442.1| - 1.9e-08 34.4 0.0 5.6e-08 32.8 0.0 1.8 2 0 0 2 2 2 1 DEAD/H associated AAA_19 PF13245.6 gi|297527418|ref|YP_003669442.1| - 5.9e-05 23.4 0.0 0.00013 22.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 gi|297527418|ref|YP_003669442.1| - 0.016 14.8 0.0 0.073 12.6 0.0 1.8 1 1 1 2 2 2 0 UvrD/REP helicase N-terminal domain PhoH PF02562.16 gi|297527418|ref|YP_003669442.1| - 0.027 13.9 0.0 0.12 11.8 0.0 2.1 1 0 0 1 1 1 0 PhoH-like protein HypA PF01155.19 gi|297527418|ref|YP_003669442.1| - 0.031 14.3 0.0 0.092 12.8 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|297527418|ref|YP_003669442.1| - 0.12 12.4 1.6 4.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 AAA_22 PF13401.6 gi|297527418|ref|YP_003669442.1| - 0.14 12.4 0.1 0.85 9.9 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|297527418|ref|YP_003669442.1| - 0.17 11.6 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|297527419|ref|YP_003669443.1| - 1.7e-16 61.1 0.8 8.5e-16 58.7 0.8 2.1 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|297527419|ref|YP_003669443.1| - 1.1e-08 34.5 0.0 5.8e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|297527419|ref|YP_003669443.1| - 8.5e-05 22.8 0.0 0.005 17.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|297527419|ref|YP_003669443.1| - 0.00013 21.3 0.0 0.00021 20.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|297527419|ref|YP_003669443.1| - 0.00015 21.2 0.0 0.0012 18.2 0.0 2.0 2 0 0 2 2 2 1 KaiC TrwB_AAD_bind PF10412.9 gi|297527419|ref|YP_003669443.1| - 0.00018 20.6 0.0 0.00079 18.4 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|297527419|ref|YP_003669443.1| - 0.00048 19.6 0.0 0.00083 18.8 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|297527419|ref|YP_003669443.1| - 0.0019 18.6 0.1 0.0072 16.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF853 PF05872.12 gi|297527419|ref|YP_003669443.1| - 0.0039 15.9 0.0 0.024 13.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Sigma54_activat PF00158.26 gi|297527419|ref|YP_003669443.1| - 0.0072 16.0 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|297527419|ref|YP_003669443.1| - 0.015 15.7 0.0 0.042 14.2 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|297527419|ref|YP_003669443.1| - 0.015 14.8 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|297527419|ref|YP_003669443.1| - 0.017 14.2 0.0 0.03 13.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF815 PF05673.13 gi|297527419|ref|YP_003669443.1| - 0.021 14.0 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ResIII PF04851.15 gi|297527419|ref|YP_003669443.1| - 0.034 14.1 0.0 0.094 12.7 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|297527419|ref|YP_003669443.1| - 0.035 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|297527419|ref|YP_003669443.1| - 0.035 14.7 0.0 0.078 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|297527419|ref|YP_003669443.1| - 0.042 13.6 0.0 0.23 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|297527419|ref|YP_003669443.1| - 0.06 13.8 0.1 0.74 10.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|297527419|ref|YP_003669443.1| - 0.074 13.6 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter DEAD PF00270.29 gi|297527419|ref|YP_003669443.1| - 0.094 12.5 0.0 5.8 6.7 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|297527419|ref|YP_003669443.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|297527419|ref|YP_003669443.1| - 0.13 11.7 0.0 0.6 9.5 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.6 gi|297527419|ref|YP_003669443.1| - 0.13 12.5 0.0 0.27 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|297527419|ref|YP_003669443.1| - 0.18 11.4 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|297527419|ref|YP_003669443.1| - 0.21 10.9 0.0 0.36 10.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_pol_Rpo13 PF12136.8 gi|297527420|ref|YP_003669444.1| - 7.6e-14 51.4 4.7 8.6e-14 51.2 3.0 1.9 1 1 1 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain Sugarporin_N PF11471.8 gi|297527420|ref|YP_003669444.1| - 0.079 12.9 2.3 0.079 12.9 2.3 2.0 3 0 0 3 3 3 0 Maltoporin periplasmic N-terminal extension PRK PF00485.18 gi|297527421|ref|YP_003669445.1| - 0.06 13.1 0.1 0.088 12.5 0.1 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family PCNA_N PF00705.18 gi|297527422|ref|YP_003669446.1| - 4.3e-11 42.6 0.0 7.5e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|297527422|ref|YP_003669446.1| - 0.00031 20.9 0.0 0.038 14.2 0.0 2.8 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain DUF960 PF06124.11 gi|297527422|ref|YP_003669446.1| - 0.011 16.3 0.0 0.036 14.7 0.0 1.8 1 0 0 1 1 1 0 Staphylococcal protein of unknown function (DUF960) RtxA PF07634.11 gi|297527422|ref|YP_003669446.1| - 0.076 13.5 0.2 0.16 12.5 0.2 1.6 1 0 0 1 1 1 0 RtxA repeat POR PF01558.18 gi|297527424|ref|YP_003669448.1| - 7.4e-34 117.3 1.6 8.9e-34 117.1 1.6 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|297527425|ref|YP_003669449.1| - 4.3e-15 54.8 16.5 6.8e-10 38.3 6.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|297527425|ref|YP_003669449.1| - 7.5e-12 44.8 16.1 1.3e-06 28.2 5.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|297527425|ref|YP_003669449.1| - 8e-12 45.1 10.4 1.1e-11 44.7 10.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|297527425|ref|YP_003669449.1| - 4.1e-10 40.1 12.1 5.9e-10 39.6 12.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|297527425|ref|YP_003669449.1| - 6.7e-09 35.7 22.1 1.2e-05 25.3 12.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297527425|ref|YP_003669449.1| - 1e-08 36.0 9.2 4e-05 24.5 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|297527425|ref|YP_003669449.1| - 8.2e-08 32.3 9.7 1.2e-07 31.8 9.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|297527425|ref|YP_003669449.1| - 2.2e-06 28.1 4.2 0.023 15.2 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297527425|ref|YP_003669449.1| - 2.7e-06 27.1 13.4 9.4e-05 22.3 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|297527425|ref|YP_003669449.1| - 6e-06 26.4 14.3 0.00026 21.3 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|297527425|ref|YP_003669449.1| - 0.00053 20.4 13.1 0.7 10.4 13.1 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|297527425|ref|YP_003669449.1| - 0.0016 19.2 19.2 0.012 16.5 7.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|297527425|ref|YP_003669449.1| - 0.0048 17.7 7.0 0.14 13.1 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|297527425|ref|YP_003669449.1| - 0.043 14.6 14.8 0.095 13.5 3.9 3.2 2 2 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|297527425|ref|YP_003669449.1| - 0.061 13.9 12.1 0.41 11.2 2.0 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|297527425|ref|YP_003669449.1| - 2 8.6 13.0 26 5.0 13.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|297527426|ref|YP_003669450.1| - 5.6e-67 225.9 0.2 7.3e-67 225.5 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|297527426|ref|YP_003669450.1| - 4.1e-25 88.0 0.0 1.6e-24 86.1 0.0 1.9 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|297527426|ref|YP_003669450.1| - 0.0031 17.4 0.0 0.0062 16.4 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|297527427|ref|YP_003669451.1| - 1.5e-25 89.7 0.7 2e-25 89.4 0.7 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|297527427|ref|YP_003669451.1| - 0.0007 18.9 0.9 0.00098 18.4 0.9 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Acetyltransf_1 PF00583.25 gi|297527428|ref|YP_003669452.1| - 1.3e-20 73.8 0.2 8.1e-19 68.0 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|297527428|ref|YP_003669452.1| - 1.2e-15 57.6 0.0 2.6e-13 50.0 0.0 2.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|297527428|ref|YP_003669452.1| - 1e-13 51.5 0.5 5.8e-13 49.1 0.2 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|297527428|ref|YP_003669452.1| - 3.5e-06 27.1 0.0 0.00036 20.6 0.0 2.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|297527428|ref|YP_003669452.1| - 7.3e-06 25.9 0.0 1.5e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|297527428|ref|YP_003669452.1| - 0.00011 22.3 0.0 0.00025 21.1 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|297527428|ref|YP_003669452.1| - 0.019 15.1 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ROS_MUCR PF05443.11 gi|297527428|ref|YP_003669452.1| - 0.15 12.1 0.1 4.2 7.4 0.0 2.3 2 0 0 2 2 2 0 ROS/MUCR transcriptional regulator protein Sec61_beta PF03911.16 gi|297527429|ref|YP_003669453.1| - 3e-13 49.6 0.7 3.4e-13 49.4 0.7 1.1 1 0 0 1 1 1 1 Sec61beta family MazG PF03819.17 gi|297527430|ref|YP_003669454.1| - 2.2e-11 43.8 3.3 2.5e-11 43.6 2.1 1.6 1 1 1 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|297527430|ref|YP_003669454.1| - 7.7e-06 26.1 0.1 1.1e-05 25.6 0.1 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|297527430|ref|YP_003669454.1| - 0.00012 22.4 0.7 0.00014 22.2 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase HHH_7 PF14635.6 gi|297527430|ref|YP_003669454.1| - 0.094 13.1 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif PcrB PF01884.17 gi|297527431|ref|YP_003669455.1| - 4.9e-52 176.6 0.1 6e-52 176.3 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|297527431|ref|YP_003669455.1| - 4.8e-05 22.9 0.0 8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 gi|297527431|ref|YP_003669455.1| - 0.0054 15.9 0.1 0.052 12.7 0.0 2.1 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DpaA_N PF16924.5 gi|297527431|ref|YP_003669455.1| - 0.079 13.1 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain DUF3237 PF11578.8 gi|297527431|ref|YP_003669455.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3237) Elf1 PF05129.13 gi|297527432|ref|YP_003669456.1| - 3.1e-22 78.4 0.5 5.7e-22 77.6 0.3 1.5 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like zf-ZPR1 PF03367.13 gi|297527432|ref|YP_003669456.1| - 0.0013 18.6 0.5 0.0022 17.9 0.5 1.3 1 1 0 1 1 1 1 ZPR1 zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|297527432|ref|YP_003669456.1| - 0.0063 16.0 1.8 0.045 13.3 1.8 2.2 1 1 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|297527432|ref|YP_003669456.1| - 0.013 15.6 0.5 1.2 9.3 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.20 gi|297527432|ref|YP_003669456.1| - 0.021 14.9 0.5 0.063 13.3 0.0 1.9 2 0 0 2 2 2 0 Rubredoxin Lar_restr_allev PF14354.6 gi|297527432|ref|YP_003669456.1| - 0.021 15.2 0.3 0.072 13.5 0.3 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|297527432|ref|YP_003669456.1| - 0.021 15.0 1.3 0.27 11.5 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|297527432|ref|YP_003669456.1| - 0.048 13.4 0.2 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein T4_baseplate PF12322.8 gi|297527432|ref|YP_003669456.1| - 0.066 12.7 0.1 0.095 12.2 0.1 1.2 1 0 0 1 1 1 0 T4 bacteriophage base plate protein zf-H2C2_2 PF13465.6 gi|297527432|ref|YP_003669456.1| - 0.078 13.4 0.7 0.18 12.3 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger double domain DUF4776 PF16003.5 gi|297527432|ref|YP_003669456.1| - 0.093 11.7 0.2 0.13 11.3 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4776) zf-ribbon_3 PF13248.6 gi|297527432|ref|YP_003669456.1| - 0.14 11.6 3.0 0.21 11.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|297527432|ref|YP_003669456.1| - 0.14 12.1 1.1 0.14 12.1 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ribosomal_L32p PF01783.23 gi|297527432|ref|YP_003669456.1| - 0.17 12.2 2.0 0.43 10.9 0.6 2.0 2 0 0 2 2 2 0 Ribosomal L32p protein family CpXC PF14353.6 gi|297527432|ref|YP_003669456.1| - 0.26 11.4 2.4 21 5.2 2.6 2.1 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|297527432|ref|YP_003669456.1| - 0.28 11.1 5.1 0.53 10.2 2.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|297527432|ref|YP_003669456.1| - 0.52 11.0 0.0 0.52 11.0 0.0 2.5 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.11 gi|297527432|ref|YP_003669456.1| - 0.94 9.2 3.7 2.1 8.1 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain SWIM PF04434.17 gi|297527433|ref|YP_003669457.1| - 0.032 13.9 0.3 0.057 13.1 0.3 1.4 1 0 0 1 1 1 0 SWIM zinc finger TP6A_N PF04406.14 gi|297527433|ref|YP_003669457.1| - 0.22 11.6 1.9 7.2 6.7 0.1 2.3 2 0 0 2 2 2 0 Type IIB DNA topoisomerase Rib_5-P_isom_A PF06026.14 gi|297527434|ref|YP_003669458.1| - 3.3e-47 160.3 0.0 4e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Sugar-bind PF04198.13 gi|297527434|ref|YP_003669458.1| - 0.013 14.6 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain MAF_flag10 PF01973.18 gi|297527434|ref|YP_003669458.1| - 0.089 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF115 IF-2B PF01008.17 gi|297527435|ref|YP_003669459.1| - 7.7e-84 281.2 0.3 9e-84 281.0 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF996 PF06195.13 gi|297527436|ref|YP_003669460.1| - 1.3e-25 90.2 31.7 1.3e-25 90.2 31.7 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF996) Piezo_RRas_bdg PF12166.8 gi|297527436|ref|YP_003669460.1| - 0.46 9.7 1.9 0.87 8.8 1.9 1.4 1 0 0 1 1 1 0 Piezo non-specific cation channel, R-Ras-binding domain DUF973 PF06157.11 gi|297527436|ref|YP_003669460.1| - 1.3 8.0 48.3 0.2 10.7 35.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF973) tRNA_int_endo PF01974.17 gi|297527437|ref|YP_003669461.1| - 4.5e-11 42.7 0.1 8.8e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|297527437|ref|YP_003669461.1| - 1.5e-10 40.6 0.1 2.8e-10 39.7 0.1 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA-synt_His PF13393.6 gi|297527438|ref|YP_003669462.1| - 7.1e-56 189.7 0.0 8.6e-56 189.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|297527438|ref|YP_003669462.1| - 3.7e-13 49.8 0.0 8e-13 48.7 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|297527438|ref|YP_003669462.1| - 8.7e-08 32.2 0.2 2.4e-07 30.8 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|297527438|ref|YP_003669462.1| - 0.00014 21.4 0.0 0.00091 18.8 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Ribosomal_L22 PF00237.19 gi|297527438|ref|YP_003669462.1| - 0.015 15.6 0.9 0.031 14.5 0.1 1.9 2 0 0 2 2 2 0 Ribosomal protein L22p/L17e Neurensin PF14927.6 gi|297527438|ref|YP_003669462.1| - 0.084 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Neurensin tRNA-synt_2 PF00152.20 gi|297527438|ref|YP_003669462.1| - 0.18 10.8 5.1 0.15 11.1 0.3 2.7 3 1 0 3 3 3 0 tRNA synthetases class II (D, K and N) RtcB PF01139.17 gi|297527439|ref|YP_003669463.1| - 9.7e-167 555.3 0.0 1.1e-166 555.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB T2SSF PF00482.23 gi|297527440|ref|YP_003669464.1| - 0.34 10.9 0.0 0.34 10.9 0.0 5.2 4 2 2 6 6 6 0 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|297527441|ref|YP_003669465.1| - 7.4e-35 120.3 0.0 1.3e-34 119.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|297527441|ref|YP_003669465.1| - 0.0094 15.7 0.1 0.021 14.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|297527441|ref|YP_003669465.1| - 0.017 15.3 0.2 0.037 14.3 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|297527441|ref|YP_003669465.1| - 0.15 12.4 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain rve_2 PF13333.6 gi|297527441|ref|YP_003669465.1| - 0.23 11.7 1.3 0.53 10.5 1.3 1.7 1 0 0 1 1 1 0 Integrase core domain DUF1923 PF09083.10 gi|297527442|ref|YP_003669466.1| - 0.032 13.9 0.1 0.081 12.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1923) DUF4041 PF13250.6 gi|297527442|ref|YP_003669466.1| - 0.054 13.4 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4041) Pilin_N PF07790.11 gi|297527442|ref|YP_003669466.1| - 0.16 12.9 3.1 0.43 11.5 3.1 1.9 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Topo-VIb_trans PF09239.11 gi|297527443|ref|YP_003669467.1| - 4.2e-63 211.9 0.1 7.6e-63 211.1 0.1 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|297527443|ref|YP_003669467.1| - 1.3e-13 51.4 0.0 3.1e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|297527443|ref|YP_003669467.1| - 7.6e-11 42.0 0.0 1.6e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|297527443|ref|YP_003669467.1| - 0.0018 17.1 0.0 0.0018 17.1 0.0 1.7 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|297527443|ref|YP_003669467.1| - 0.011 16.1 0.1 0.068 13.6 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S13/S18 TP6A_N PF04406.14 gi|297527444|ref|YP_003669468.1| - 4e-23 81.2 0.2 7.6e-23 80.3 0.2 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|297527444|ref|YP_003669468.1| - 0.029 14.3 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Vac_Fusion PF02346.16 gi|297527444|ref|YP_003669468.1| - 0.083 12.5 0.3 0.083 12.5 0.3 2.3 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 ABC_tran PF00005.27 gi|297527445|ref|YP_003669469.1| - 1.1e-34 119.9 0.0 3.8e-34 118.1 0.0 1.8 2 0 0 2 2 2 1 ABC transporter OB_MalK PF17912.1 gi|297527445|ref|YP_003669469.1| - 1.2e-13 51.6 0.0 4.6e-13 49.8 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|297527445|ref|YP_003669469.1| - 7.9e-08 32.5 0.5 0.0033 17.3 0.1 2.6 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|297527445|ref|YP_003669469.1| - 5.6e-07 29.6 0.0 1.1e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.17 gi|297527445|ref|YP_003669469.1| - 1.6e-05 25.1 0.0 3e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|297527445|ref|YP_003669469.1| - 1.9e-05 24.2 0.2 0.00027 20.5 0.2 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|297527445|ref|YP_003669469.1| - 0.011 16.3 0.1 0.026 15.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain MIT_C PF16565.5 gi|297527445|ref|YP_003669469.1| - 0.015 15.3 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT Rad17 PF03215.15 gi|297527445|ref|YP_003669469.1| - 0.023 14.6 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|297527445|ref|YP_003669469.1| - 0.027 14.8 0.0 0.075 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|297527445|ref|YP_003669469.1| - 0.031 14.0 0.0 0.077 12.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain CysA_C_terminal PF17850.1 gi|297527445|ref|YP_003669469.1| - 0.039 14.5 0.0 0.12 13.0 0.0 2.0 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_30 PF13604.6 gi|297527445|ref|YP_003669469.1| - 0.043 13.5 0.1 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|297527445|ref|YP_003669469.1| - 0.068 12.2 0.2 0.23 10.5 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|297527445|ref|YP_003669469.1| - 0.078 12.9 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 gi|297527445|ref|YP_003669469.1| - 0.11 12.8 0.1 0.54 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|297527445|ref|YP_003669469.1| - 0.14 12.6 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|297527445|ref|YP_003669469.1| - 0.15 12.4 0.0 0.52 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|297527446|ref|YP_003669470.1| - 8.7e-20 71.2 24.3 8.7e-20 71.2 24.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ETRAMP PF09716.10 gi|297527446|ref|YP_003669470.1| - 4 7.6 7.9 6.2 7.0 0.3 3.1 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) BPD_transp_1 PF00528.22 gi|297527447|ref|YP_003669471.1| - 1.7e-13 50.7 28.4 1.7e-13 50.7 28.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ferlin_C PF16165.5 gi|297527447|ref|YP_003669471.1| - 0.067 13.1 1.9 0.24 11.3 1.9 2.0 1 0 0 1 1 1 0 Ferlin C-terminus SBP_bac_1 PF01547.25 gi|297527448|ref|YP_003669472.1| - 4.9e-34 118.7 7.6 6.7e-34 118.3 7.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|297527448|ref|YP_003669472.1| - 1.5e-27 97.2 2.4 2.2e-27 96.6 2.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|297527448|ref|YP_003669472.1| - 0.00013 21.5 0.9 0.015 14.7 0.4 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|297527448|ref|YP_003669472.1| - 0.00034 20.4 0.3 0.0061 16.3 0.3 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF3352 PF11832.8 gi|297527448|ref|YP_003669472.1| - 0.1 11.2 1.1 0.27 9.8 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3352) DUF2749 PF10907.8 gi|297527448|ref|YP_003669472.1| - 0.35 11.1 1.8 0.98 9.6 1.8 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF3586 PF12131.8 gi|297527448|ref|YP_003669472.1| - 5.9 7.2 7.5 15 5.9 7.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3586) ASCH PF04266.14 gi|297527449|ref|YP_003669473.1| - 2.9e-16 60.0 0.3 4.3e-16 59.4 0.3 1.2 1 0 0 1 1 1 1 ASCH domain TTRAP PF14203.6 gi|297527449|ref|YP_003669473.1| - 0.022 14.7 0.1 0.094 12.7 0.0 2.0 2 0 0 2 2 2 0 Putative tranposon-transfer assisting protein Glyco_transf_8C PF08437.10 gi|297527449|ref|YP_003669473.1| - 0.08 13.0 0.1 0.18 11.9 0.1 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 8 C-terminal tRNA-Thr_ED PF08915.11 gi|297527450|ref|YP_003669474.1| - 4.6e-49 166.0 0.0 9.8e-49 164.9 0.0 1.6 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|297527450|ref|YP_003669474.1| - 1.6e-26 92.3 1.9 3.1e-26 91.3 1.9 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|297527450|ref|YP_003669474.1| - 2.6e-16 60.1 0.5 5.2e-16 59.1 0.3 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Phage_Gp15 PF06854.11 gi|297527450|ref|YP_003669474.1| - 0.11 12.5 0.1 0.23 11.4 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage Gp15 protein Rad51 PF08423.11 gi|297527452|ref|YP_003669476.1| - 1.4e-94 316.1 0.0 1.7e-94 315.8 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|297527452|ref|YP_003669476.1| - 8.5e-15 54.9 0.0 1.2e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|297527452|ref|YP_003669476.1| - 8.4e-12 45.1 0.0 1.4e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|297527452|ref|YP_003669476.1| - 2.6e-11 43.3 0.0 4.6e-11 42.5 0.0 1.4 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.6 gi|297527452|ref|YP_003669476.1| - 5.9e-07 30.0 0.0 1.9e-06 28.4 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|297527452|ref|YP_003669476.1| - 0.00059 20.0 0.0 0.0011 19.2 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus HTH_31 PF13560.6 gi|297527452|ref|YP_003669476.1| - 0.0075 16.6 0.2 0.25 11.7 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain IMS_HHH PF11798.8 gi|297527452|ref|YP_003669476.1| - 0.012 15.9 0.0 0.053 13.9 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif AAA_18 PF13238.6 gi|297527452|ref|YP_003669476.1| - 0.025 15.1 0.0 0.072 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|297527452|ref|YP_003669476.1| - 0.059 13.1 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain BAF PF02961.14 gi|297527452|ref|YP_003669476.1| - 0.066 13.7 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor AAA PF00004.29 gi|297527452|ref|YP_003669476.1| - 0.068 13.6 0.1 0.35 11.3 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|297527452|ref|YP_003669476.1| - 0.12 12.6 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arc_PepC_II PF06847.11 gi|297527453|ref|YP_003669477.1| - 1.5e-23 83.1 0.4 1.5e-23 83.1 0.4 1.9 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|297527453|ref|YP_003669477.1| - 0.0077 16.6 14.8 0.0077 16.6 14.8 2.0 2 1 0 2 2 2 1 Type IV leader peptidase family DUF4252 PF14060.6 gi|297527453|ref|YP_003669477.1| - 0.19 11.7 0.1 0.35 10.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4252) ACT_7 PF13840.6 gi|297527454|ref|YP_003669478.1| - 0.029 14.1 0.0 0.071 12.9 0.0 1.6 2 0 0 2 2 2 0 ACT domain UCH_N PF16674.5 gi|297527454|ref|YP_003669478.1| - 0.1 12.5 0.4 0.17 11.9 0.4 1.3 1 0 0 1 1 1 0 N-terminal of ubiquitin carboxyl-terminal hydrolase 37 ODR4-like PF14778.6 gi|297527454|ref|YP_003669478.1| - 0.11 11.4 0.1 0.13 11.1 0.1 1.0 1 0 0 1 1 1 0 Olfactory receptor 4-like HIT PF01230.23 gi|297527455|ref|YP_003669479.1| - 4.1e-17 62.7 0.0 5.7e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|297527455|ref|YP_003669479.1| - 2.6e-10 40.8 0.0 3.6e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|297527455|ref|YP_003669479.1| - 1e-08 35.0 0.0 1.8e-08 34.3 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 YHS PF04945.13 gi|297527456|ref|YP_003669480.1| - 0.019 15.1 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 YHS domain DUF2208 PF09973.9 gi|297527457|ref|YP_003669481.1| - 1.8e-63 214.3 18.2 2e-63 214.1 18.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) V-set_2 PF15910.5 gi|297527458|ref|YP_003669482.1| - 0.0048 17.0 0.2 0.008 16.3 0.2 1.4 1 0 0 1 1 1 1 ICOS V-set domain DUF4010 PF13194.6 gi|297527459|ref|YP_003669483.1| - 4.2e-25 88.7 21.0 4.2e-25 88.7 21.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|297527459|ref|YP_003669483.1| - 4.6e-18 65.7 5.4 4.6e-18 65.7 5.4 3.2 2 1 2 4 4 4 1 MgtC family DUF5316 PF17247.2 gi|297527459|ref|YP_003669483.1| - 0.053 13.5 0.2 0.053 13.5 0.2 4.2 5 0 0 5 5 5 0 Family of unknown function (DUF5316) Cpta_toxin PF07254.12 gi|297527459|ref|YP_003669483.1| - 8 6.5 6.0 1.6 8.7 0.9 2.5 2 0 0 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system Alba PF01918.21 gi|297527460|ref|YP_003669484.1| - 1.6e-09 37.4 0.0 2.1e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Alba Topoisom_bac PF01131.20 gi|297527461|ref|YP_003669485.1| - 4e-73 246.8 0.0 6.6e-73 246.1 0.0 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|297527461|ref|YP_003669485.1| - 9.5e-23 80.4 0.0 3.2e-22 78.7 0.0 2.0 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|297527461|ref|YP_003669485.1| - 1.8e-18 66.9 0.0 6.2e-18 65.2 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|297527461|ref|YP_003669485.1| - 3e-09 37.1 0.3 1.2e-08 35.2 0.0 2.1 3 0 0 3 3 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|297527461|ref|YP_003669485.1| - 2.9e-08 34.0 0.5 0.00014 22.1 0.1 4.1 3 1 1 4 4 4 1 Helicase conserved C-terminal domain AAA_30 PF13604.6 gi|297527461|ref|YP_003669485.1| - 4.7e-06 26.5 0.0 1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|297527461|ref|YP_003669485.1| - 0.00011 22.5 0.0 0.00038 20.7 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|297527461|ref|YP_003669485.1| - 0.00043 20.6 0.0 0.0013 19.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|297527461|ref|YP_003669485.1| - 0.0035 16.9 0.1 0.014 14.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain zf_Rg PF17915.1 gi|297527461|ref|YP_003669485.1| - 0.0043 16.4 0.8 0.0077 15.6 0.0 1.8 2 0 0 2 2 2 1 Reverse gyrase zinc finger AAA_11 PF13086.6 gi|297527461|ref|YP_003669485.1| - 0.006 16.4 0.0 0.011 15.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|297527461|ref|YP_003669485.1| - 0.0092 15.3 0.1 0.022 14.1 0.1 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain Toprim_4 PF13662.6 gi|297527461|ref|YP_003669485.1| - 0.011 16.1 0.0 0.034 14.6 0.0 1.8 1 0 0 1 1 1 0 Toprim domain OrfB_Zn_ribbon PF07282.11 gi|297527461|ref|YP_003669485.1| - 0.039 13.9 2.0 0.35 10.8 0.3 3.0 3 0 0 3 3 2 0 Putative transposase DNA-binding domain IstB_IS21 PF01695.17 gi|297527461|ref|YP_003669485.1| - 0.048 13.4 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|297527461|ref|YP_003669485.1| - 0.072 13.6 4.4 4 7.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|297527461|ref|YP_003669485.1| - 0.091 13.1 0.0 0.27 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain DUF3896 PF13035.6 gi|297527461|ref|YP_003669485.1| - 0.16 12.1 3.6 0.93 9.7 0.2 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3896) ATPase PF06745.13 gi|297527461|ref|YP_003669485.1| - 0.17 11.2 4.7 2.7 7.3 0.2 2.5 1 1 1 2 2 2 0 KaiC HypA PF01155.19 gi|297527461|ref|YP_003669485.1| - 0.32 11.0 2.3 0.41 10.7 0.1 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|297527461|ref|YP_003669485.1| - 1.9 8.5 6.0 1.6 8.7 0.8 2.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TackOD1 PF18551.1 gi|297527461|ref|YP_003669485.1| - 2 8.0 3.6 1.5 8.4 0.4 2.3 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|297527461|ref|YP_003669485.1| - 2.7 8.0 3.9 1.8 8.6 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|297527461|ref|YP_003669485.1| - 8.6 6.6 7.1 4.9 7.4 2.1 2.7 2 0 0 2 2 2 0 Zinc ribbon domain Alba PF01918.21 gi|297527462|ref|YP_003669486.1| - 4.3e-21 74.5 1.0 5.5e-21 74.2 1.0 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|297527462|ref|YP_003669486.1| - 0.053 13.5 0.3 0.072 13.0 0.2 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P TrmB PF01978.19 gi|297527463|ref|YP_003669487.1| - 0.055 13.3 0.1 0.1 12.5 0.1 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AbiEi_4 PF13338.6 gi|297527463|ref|YP_003669487.1| - 0.1 12.8 0.8 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin DUF460 PF04312.13 gi|297527464|ref|YP_003669488.1| - 0.13 11.9 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF460) ERCC3_RAD25_C PF16203.5 gi|297527466|ref|YP_003669490.1| - 5.4e-27 94.6 0.1 1.1e-26 93.6 0.1 1.4 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|297527466|ref|YP_003669490.1| - 7.8e-20 71.6 0.1 3.4e-19 69.5 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|297527466|ref|YP_003669490.1| - 3e-18 66.2 0.1 6.7e-18 65.1 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|297527466|ref|YP_003669490.1| - 1.9e-07 31.0 0.1 9.4e-07 28.8 0.0 2.2 2 2 1 3 3 3 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|297527466|ref|YP_003669490.1| - 0.00079 18.2 0.0 0.0017 17.2 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain TPR_15 PF13429.6 gi|297527466|ref|YP_003669490.1| - 0.1 11.8 0.2 0.17 11.0 0.2 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_22 PF13401.6 gi|297527466|ref|YP_003669490.1| - 0.29 11.4 1.2 3.8 7.8 0.2 3.2 4 1 0 4 4 4 0 AAA domain Pribosyltran PF00156.27 gi|297527468|ref|YP_003669492.1| - 6.2e-06 25.8 0.2 1e-05 25.1 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_49 PF18010.1 gi|297527468|ref|YP_003669492.1| - 0.00071 19.3 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 Cry35Ab1 HTH C-terminal domain UPRTase PF14681.6 gi|297527468|ref|YP_003669492.1| - 0.002 17.6 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Methyltransf_16 PF10294.9 gi|297527468|ref|YP_003669492.1| - 0.13 11.9 0.1 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 Lysine methyltransferase ACT PF01842.25 gi|297527469|ref|YP_003669493.1| - 8.5e-08 31.8 0.6 7.5e-07 28.8 0.6 2.3 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|297527469|ref|YP_003669493.1| - 5.5e-05 23.7 0.0 0.00011 22.7 0.0 1.5 1 0 0 1 1 1 1 ACT domain MazE_antitoxin PF04014.18 gi|297527469|ref|YP_003669493.1| - 0.00034 20.5 1.0 0.00034 20.5 1.0 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|297527469|ref|YP_003669493.1| - 0.0023 17.9 0.1 0.0042 17.0 0.1 1.4 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like ACT_6 PF13740.6 gi|297527469|ref|YP_003669493.1| - 0.0086 16.0 0.1 0.036 14.0 0.0 2.0 1 1 1 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|297527469|ref|YP_003669493.1| - 0.038 13.8 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 ACT domain DUF4089 PF13318.6 gi|297527469|ref|YP_003669493.1| - 0.091 13.2 0.1 0.2 12.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4089) DUF72 PF01904.18 gi|297527470|ref|YP_003669494.1| - 6.5e-29 101.6 0.2 8.3e-29 101.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|297527470|ref|YP_003669494.1| - 0.00014 21.4 0.0 0.0073 15.8 0.0 2.2 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel Nup35_RRM_2 PF14605.6 gi|297527470|ref|YP_003669494.1| - 0.065 13.2 0.0 0.24 11.4 0.0 1.9 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif SLAC1 PF03595.17 gi|297527471|ref|YP_003669495.1| - 0.0077 15.5 0.9 0.0077 15.5 0.9 1.6 2 0 0 2 2 2 1 Voltage-dependent anion channel HTH_23 PF13384.6 gi|297527473|ref|YP_003669497.1| - 3.3e-10 39.5 0.6 3.3e-06 26.7 0.2 2.2 2 0 0 2 2 2 2 Homeodomain-like domain HTH_38 PF13936.6 gi|297527473|ref|YP_003669497.1| - 9.8e-07 28.4 0.7 8e-06 25.5 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|297527473|ref|YP_003669497.1| - 4e-06 26.8 0.1 0.1 12.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_7 PF02796.15 gi|297527473|ref|YP_003669497.1| - 5.9e-05 23.1 7.7 0.0036 17.3 2.4 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_40 PF14493.6 gi|297527473|ref|YP_003669497.1| - 0.00061 20.2 1.1 0.074 13.5 0.0 2.4 1 1 2 3 3 3 1 Helix-turn-helix domain TrmB PF01978.19 gi|297527473|ref|YP_003669497.1| - 0.0022 17.8 0.4 0.02 14.8 0.1 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|297527473|ref|YP_003669497.1| - 0.0053 16.5 0.0 0.019 14.8 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_35 PF13693.6 gi|297527473|ref|YP_003669497.1| - 0.013 15.6 0.1 0.024 14.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0175 PF03683.13 gi|297527473|ref|YP_003669497.1| - 0.019 14.7 0.2 0.57 9.9 0.0 2.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_29 PF13551.6 gi|297527473|ref|YP_003669497.1| - 0.025 14.6 0.0 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_10 PF04967.12 gi|297527473|ref|YP_003669497.1| - 0.035 13.9 0.0 0.14 12.0 0.0 1.9 1 0 0 1 1 1 0 HTH DNA binding domain PfUIS3 PF11567.8 gi|297527473|ref|YP_003669497.1| - 0.049 14.0 1.5 0.073 13.4 0.2 1.8 1 1 0 1 1 1 0 Plasmodium falciparum UIS3 membrane protein CENP-B_N PF04218.13 gi|297527473|ref|YP_003669497.1| - 0.068 12.8 4.2 0.12 12.0 0.1 2.8 3 2 1 4 4 4 0 CENP-B N-terminal DNA-binding domain GCR1_C PF12550.8 gi|297527473|ref|YP_003669497.1| - 0.077 13.3 6.1 0.16 12.3 6.1 1.5 1 1 0 1 1 1 0 Transcriptional activator of glycolytic enzymes IF2_N PF04760.15 gi|297527473|ref|YP_003669497.1| - 0.089 12.6 2.0 0.91 9.4 0.0 3.0 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_psq PF05225.16 gi|297527473|ref|YP_003669497.1| - 0.16 11.8 0.5 0.48 10.2 0.2 2.0 2 0 0 2 2 2 0 helix-turn-helix, Psq domain Ribo_biogen_C PF04034.13 gi|297527474|ref|YP_003669498.1| - 6.7e-38 129.3 0.0 8e-38 129.0 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal BLYB PF05289.11 gi|297527474|ref|YP_003669498.1| - 0.06 13.6 0.1 0.1 12.8 0.1 1.3 1 0 0 1 1 1 0 Borrelia hemolysin accessory protein RLI PF04068.15 gi|297527474|ref|YP_003669498.1| - 0.064 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Possible Fer4-like domain in RNase L inhibitor, RLI AsnC_trans_reg PF01037.21 gi|297527475|ref|YP_003669499.1| - 2.7e-15 56.1 1.3 3e-15 55.9 1.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MS_channel PF00924.18 gi|297527476|ref|YP_003669500.1| - 2e-57 194.1 1.1 2.7e-57 193.6 1.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel DsbD_2 PF13386.6 gi|297527476|ref|YP_003669500.1| - 0.069 13.1 4.8 0.11 12.5 4.8 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region DUF432 PF04254.13 gi|297527477|ref|YP_003669501.1| - 6.3e-35 120.0 0.9 9.8e-35 119.4 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Glyco_transf_4 PF13439.6 gi|297527478|ref|YP_003669502.1| - 3.9e-06 27.0 0.1 8.7e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|297527478|ref|YP_003669502.1| - 1e-05 26.0 0.0 1.7e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|297527478|ref|YP_003669502.1| - 0.15 10.9 0.0 0.2 10.5 0.0 1.4 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.20 gi|297527479|ref|YP_003669503.1| - 1.5e-19 70.1 0.0 2.6e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|297527479|ref|YP_003669503.1| - 9.2e-09 35.8 0.0 1.4e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|297527479|ref|YP_003669503.1| - 0.00025 21.1 0.1 0.0012 18.9 0.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|297527479|ref|YP_003669503.1| - 0.035 14.5 0.0 0.072 13.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 AstA PF04958.12 gi|297527479|ref|YP_003669503.1| - 0.19 10.2 0.0 0.28 9.7 0.0 1.1 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit Phosphodiest PF01663.22 gi|297527480|ref|YP_003669504.1| - 5.1e-23 82.2 0.0 7.2e-23 81.7 0.0 1.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|297527480|ref|YP_003669504.1| - 0.0061 16.0 0.0 0.019 14.4 0.0 1.7 2 0 0 2 2 2 1 Sulfatase PglZ PF08665.12 gi|297527480|ref|YP_003669504.1| - 0.017 15.2 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 PglZ domain Metalloenzyme PF01676.18 gi|297527480|ref|YP_003669504.1| - 0.02 14.3 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily CHB_HEX PF03173.13 gi|297527480|ref|YP_003669504.1| - 0.19 11.4 0.0 23 4.6 0.0 2.3 2 0 0 2 2 2 0 Putative carbohydrate binding domain Glycos_transf_2 PF00535.26 gi|297527481|ref|YP_003669505.1| - 6e-10 39.2 0.1 9e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Phosphodiest PF01663.22 gi|297527482|ref|YP_003669506.1| - 2.3e-20 73.5 0.0 1.4e-19 70.9 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|297527482|ref|YP_003669506.1| - 0.041 14.0 0.0 0.068 13.3 0.0 1.3 1 0 0 1 1 1 0 PglZ domain Ribosomal_L37e PF01907.19 gi|297527484|ref|YP_003669508.1| - 2.4e-22 78.8 13.2 2.7e-22 78.7 13.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e HypA PF01155.19 gi|297527484|ref|YP_003669508.1| - 0.41 10.7 1.8 0.57 10.2 1.7 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LSM PF01423.22 gi|297527485|ref|YP_003669509.1| - 9.6e-24 82.9 0.5 1e-23 82.7 0.5 1.0 1 0 0 1 1 1 1 LSM domain DUF150_C PF17384.2 gi|297527485|ref|YP_003669509.1| - 0.0081 16.3 0.2 0.011 15.8 0.2 1.3 1 1 0 1 1 1 1 RimP C-terminal SH3 domain SM-ATX PF14438.6 gi|297527485|ref|YP_003669509.1| - 0.093 12.9 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF1947 PF09183.10 gi|297527486|ref|YP_003669510.1| - 7.8e-22 77.4 0.6 1.3e-21 76.6 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) PUA PF01472.20 gi|297527486|ref|YP_003669510.1| - 4.8e-16 58.5 1.8 4.8e-16 58.5 1.8 1.9 2 0 0 2 2 2 1 PUA domain Pre-PUA PF17832.1 gi|297527486|ref|YP_003669510.1| - 0.0025 18.5 0.2 0.011 16.4 0.2 1.9 1 1 0 1 1 1 1 Pre-PUA-like domain UPF0113 PF03657.13 gi|297527486|ref|YP_003669510.1| - 0.33 11.2 2.5 0.25 11.6 0.5 1.7 2 0 0 2 2 2 0 UPF0113 PUA domain MacB_PCD PF12704.7 gi|297527487|ref|YP_003669511.1| - 0.018 15.4 0.3 0.018 15.4 0.3 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain Phage_holin_2_3 PF16080.5 gi|297527487|ref|YP_003669511.1| - 0.029 14.1 0.5 0.053 13.3 0.5 1.5 1 0 0 1 1 1 0 Bacteriophage holin family HP1 Wzy_C PF04932.15 gi|297527487|ref|YP_003669511.1| - 0.055 13.1 0.2 0.058 13.0 0.2 1.0 1 0 0 1 1 1 0 O-Antigen ligase DUF4199 PF13858.6 gi|297527487|ref|YP_003669511.1| - 0.064 13.7 1.7 0.3 11.5 1.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) Deltameth_res PF16020.5 gi|297527487|ref|YP_003669511.1| - 0.26 11.2 2.2 8.7 6.3 0.0 2.2 2 0 0 2 2 2 0 Deltamethrin resistance FKBP_C PF00254.28 gi|297527488|ref|YP_003669512.1| - 1.3e-11 44.7 0.1 7.8e-11 42.2 0.0 2.2 2 2 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|297527488|ref|YP_003669512.1| - 2.8e-07 30.5 3.4 6.6e-07 29.3 3.4 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal eIF-1a PF01176.19 gi|297527488|ref|YP_003669512.1| - 0.029 14.2 3.3 8 6.3 0.1 3.4 4 0 0 4 4 4 0 Translation initiation factor 1A / IF-1 DUF3553 PF12073.8 gi|297527488|ref|YP_003669512.1| - 0.11 12.3 0.4 0.26 11.0 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) MS_channel PF00924.18 gi|297527488|ref|YP_003669512.1| - 0.36 10.3 1.9 0.82 9.2 1.1 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel Fe-ADH_2 PF13685.6 gi|297527489|ref|YP_003669513.1| - 1.3e-78 264.2 0.1 1.5e-78 263.9 0.1 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|297527489|ref|YP_003669513.1| - 8.2e-25 87.4 0.9 7.7e-24 84.2 0.9 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|297527489|ref|YP_003669513.1| - 3e-08 33.1 0.0 1.9e-05 24.0 0.0 2.8 2 1 0 2 2 2 2 3-dehydroquinate synthase Proteasome PF00227.26 gi|297527490|ref|YP_003669514.1| - 3.7e-55 186.4 0.3 4.4e-55 186.1 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.8 gi|297527491|ref|YP_003669515.1| - 8.2e-23 80.8 0.0 1.9e-22 79.7 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|297527491|ref|YP_003669515.1| - 1e-21 76.6 1.1 1e-21 76.6 1.1 2.9 3 0 0 3 3 3 1 KH domain RMMBL PF07521.12 gi|297527491|ref|YP_003669515.1| - 3.5e-16 58.9 0.1 1.1e-15 57.3 0.0 1.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|297527491|ref|YP_003669515.1| - 3.3e-15 56.0 0.0 5.7e-14 52.0 0.0 2.3 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|297527491|ref|YP_003669515.1| - 5.6e-12 45.6 0.1 1e-11 44.8 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|297527491|ref|YP_003669515.1| - 3.2e-11 43.6 0.2 1.8e-07 31.3 0.1 2.7 3 0 0 3 3 3 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|297527491|ref|YP_003669515.1| - 0.0056 16.6 0.0 0.017 15.0 0.0 1.8 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF2220 PF09983.9 gi|297527491|ref|YP_003669515.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria C-term(DUF2220) CTP_transf_like PF01467.26 gi|297527492|ref|YP_003669516.1| - 7.5e-13 48.9 0.0 8.4e-13 48.7 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|297527492|ref|YP_003669516.1| - 0.13 11.4 0.0 0.37 9.9 0.0 1.6 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase RTC PF01137.21 gi|297527493|ref|YP_003669517.1| - 1.5e-77 259.7 0.0 1.7e-77 259.6 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|297527493|ref|YP_003669517.1| - 1.7e-22 79.9 0.2 2.7e-22 79.2 0.2 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain MMR_HSR1 PF01926.23 gi|297527494|ref|YP_003669518.1| - 2.4e-19 69.5 0.0 5.7e-19 68.3 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|297527494|ref|YP_003669518.1| - 3.5e-19 68.3 0.2 9.4e-19 67.0 0.2 1.8 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|297527494|ref|YP_003669518.1| - 6.8e-11 41.9 0.0 1.1e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B NOG1_N PF17835.1 gi|297527494|ref|YP_003669518.1| - 2.7e-09 37.2 1.8 1.1e-08 35.2 0.3 2.1 1 1 1 2 2 2 1 NOG1 N-terminal helical domain RsgA_GTPase PF03193.16 gi|297527494|ref|YP_003669518.1| - 7.7e-05 22.7 3.4 0.28 11.1 0.3 3.0 2 1 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|297527494|ref|YP_003669518.1| - 0.00017 21.1 0.1 0.00039 19.9 0.1 1.6 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|297527494|ref|YP_003669518.1| - 0.00072 19.5 0.9 0.0014 18.7 0.3 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|297527494|ref|YP_003669518.1| - 0.0014 18.2 0.2 0.12 11.9 0.1 2.4 2 0 0 2 2 2 1 Ras family GTP_EFTU PF00009.27 gi|297527494|ref|YP_003669518.1| - 0.0016 18.0 1.6 0.66 9.5 1.6 3.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|297527494|ref|YP_003669518.1| - 0.0034 17.5 0.3 1.2 9.2 0.0 2.6 1 1 1 2 2 2 1 Dynamin family Roc PF08477.13 gi|297527494|ref|YP_003669518.1| - 0.0081 16.4 0.1 2.6 8.3 0.0 2.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|297527494|ref|YP_003669518.1| - 0.0083 16.2 0.0 0.038 14.0 0.0 2.1 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|297527494|ref|YP_003669518.1| - 0.035 13.9 0.5 0.17 11.6 0.5 2.1 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|297527494|ref|YP_003669518.1| - 0.041 13.0 0.1 0.088 12.0 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_18 PF13238.6 gi|297527494|ref|YP_003669518.1| - 0.05 14.2 0.1 0.12 12.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|297527494|ref|YP_003669518.1| - 0.05 13.5 0.1 0.14 12.0 0.1 1.8 1 0 0 1 1 1 0 NTPase AAA_22 PF13401.6 gi|297527494|ref|YP_003669518.1| - 0.1 12.9 0.0 0.26 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|297527494|ref|YP_003669518.1| - 0.19 12.1 0.0 0.36 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain TF_Zn_Ribbon PF08271.12 gi|297527495|ref|YP_003669519.1| - 1.2e-10 40.7 0.5 3.7e-10 39.1 0.5 1.9 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|297527495|ref|YP_003669519.1| - 0.045 13.7 1.3 0.067 13.1 0.1 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|297527495|ref|YP_003669519.1| - 0.047 13.1 3.6 0.35 10.3 3.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|297527495|ref|YP_003669519.1| - 0.054 13.2 1.4 0.091 12.5 1.4 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Auto_anti-p27 PF06677.12 gi|297527495|ref|YP_003669519.1| - 0.077 13.2 1.0 0.12 12.5 1.0 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|297527495|ref|YP_003669519.1| - 0.1 12.6 1.0 0.42 10.6 1.2 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|297527495|ref|YP_003669519.1| - 0.19 11.5 0.6 0.38 10.5 0.6 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|297527495|ref|YP_003669519.1| - 1 9.7 6.2 5.4 7.4 6.2 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Proteasome PF00227.26 gi|297527496|ref|YP_003669520.1| - 1.9e-54 184.1 0.0 2.3e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Endonuclease_5 PF04493.14 gi|297527497|ref|YP_003669521.1| - 9.9e-52 175.5 0.1 1.2e-51 175.2 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V DUF2582 PF10771.9 gi|297527498|ref|YP_003669522.1| - 0.067 13.3 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) AdoHcyase PF05221.17 gi|297527499|ref|YP_003669523.1| - 7.7e-72 242.0 0.0 1.6e-41 142.5 0.2 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|297527499|ref|YP_003669523.1| - 4.1e-54 183.0 0.1 6.6e-54 182.3 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|297527499|ref|YP_003669523.1| - 5.6e-08 32.5 0.2 1.3e-07 31.4 0.1 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|297527499|ref|YP_003669523.1| - 6.7e-08 32.1 0.2 1.3e-07 31.2 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CdhD PF03599.16 gi|297527499|ref|YP_003669523.1| - 0.016 14.0 0.2 0.06 12.0 0.2 1.7 1 1 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF1541 PF07563.11 gi|297527499|ref|YP_003669523.1| - 0.15 12.0 0.5 0.57 10.1 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1541) TrkA_N PF02254.18 gi|297527499|ref|YP_003669523.1| - 0.17 12.2 1.8 0.39 11.0 0.1 2.5 3 1 0 3 3 3 0 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|297527499|ref|YP_003669523.1| - 0.3 10.4 1.3 3 7.2 1.3 2.2 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.14 gi|297527500|ref|YP_003669524.1| - 1.1e-48 166.0 0.7 1.3e-48 165.8 0.7 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|297527500|ref|YP_003669524.1| - 1.4e-23 83.6 1.0 1e-18 67.6 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|297527500|ref|YP_003669524.1| - 1.9e-17 63.6 1.5 6.1e-13 49.1 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|297527500|ref|YP_003669524.1| - 2.8e-10 39.9 7.7 1.9e-05 23.9 1.7 4.6 3 1 2 5 5 5 3 FAD binding domain FAD_oxidored PF12831.7 gi|297527500|ref|YP_003669524.1| - 1.2e-09 38.1 0.5 3.3e-07 30.0 0.0 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|297527500|ref|YP_003669524.1| - 2.3e-07 30.3 0.6 0.00014 21.2 0.1 2.4 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.14 gi|297527500|ref|YP_003669524.1| - 3.8e-06 25.9 0.8 0.00039 19.2 0.2 2.9 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|297527500|ref|YP_003669524.1| - 2e-05 24.0 1.1 0.0038 16.5 1.0 2.3 2 0 0 2 2 2 2 FAD binding domain GIDA PF01134.22 gi|297527500|ref|YP_003669524.1| - 2.8e-05 23.4 6.5 0.00039 19.6 0.7 3.2 3 1 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 gi|297527500|ref|YP_003669524.1| - 4.5e-05 23.2 7.2 0.003 17.2 1.1 3.3 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|297527500|ref|YP_003669524.1| - 0.00044 20.4 1.6 0.02 15.1 0.3 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|297527500|ref|YP_003669524.1| - 0.00093 19.6 0.1 0.52 10.8 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding VanW PF04294.13 gi|297527500|ref|YP_003669524.1| - 0.0013 18.4 0.0 0.0057 16.3 0.0 2.0 2 0 0 2 2 2 1 VanW like protein AlaDh_PNT_C PF01262.21 gi|297527500|ref|YP_003669524.1| - 0.002 17.5 0.4 0.35 10.1 0.1 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|297527500|ref|YP_003669524.1| - 0.0035 16.5 0.3 6.2 5.9 0.1 3.1 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|297527500|ref|YP_003669524.1| - 0.0035 16.3 1.6 0.099 11.5 0.5 2.1 2 0 0 2 2 2 1 Tryptophan halogenase PALP PF00291.25 gi|297527500|ref|YP_003669524.1| - 0.0064 15.9 0.1 1.5 8.1 0.0 2.2 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme Lycopene_cycl PF05834.12 gi|297527500|ref|YP_003669524.1| - 0.043 12.8 1.1 0.07 12.2 0.5 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|297527500|ref|YP_003669524.1| - 0.071 13.1 0.5 31 4.5 0.3 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding PhoU PF01895.19 gi|297527501|ref|YP_003669525.1| - 1.7e-27 95.7 8.2 1.7e-14 54.0 0.6 2.3 2 0 0 2 2 2 2 PhoU domain NleF_casp_inhib PF16809.5 gi|297527501|ref|YP_003669525.1| - 0.0098 15.8 3.9 0.041 13.8 3.9 2.0 1 1 1 2 2 2 1 NleF caspase inhibitor Cullin_Nedd8 PF10557.9 gi|297527501|ref|YP_003669525.1| - 0.034 14.2 0.5 7.2 6.7 0.0 2.7 2 1 0 2 2 2 0 Cullin protein neddylation domain Toxin_trans PF07952.12 gi|297527501|ref|YP_003669525.1| - 0.23 10.5 11.7 0.15 11.2 0.6 2.1 1 1 1 2 2 2 0 Clostridium neurotoxin, Translocation domain ABC_tran PF00005.27 gi|297527502|ref|YP_003669526.1| - 2.7e-35 121.9 0.0 3.6e-35 121.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|297527502|ref|YP_003669526.1| - 5.6e-12 46.1 0.1 2.8e-06 27.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297527502|ref|YP_003669526.1| - 6.6e-07 29.0 0.1 0.002 17.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|297527502|ref|YP_003669526.1| - 4.1e-05 23.4 0.7 0.14 11.9 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|297527502|ref|YP_003669526.1| - 0.00022 20.9 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|297527502|ref|YP_003669526.1| - 0.00044 19.5 0.0 0.00075 18.8 0.0 1.3 1 1 0 1 1 1 1 NB-ARC domain AAA_23 PF13476.6 gi|297527502|ref|YP_003669526.1| - 0.0017 18.9 0.3 0.0038 17.8 0.3 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|297527502|ref|YP_003669526.1| - 0.0033 17.4 0.0 0.009 15.9 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|297527502|ref|YP_003669526.1| - 0.0059 16.9 0.1 0.015 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|297527502|ref|YP_003669526.1| - 0.011 16.1 0.0 0.016 15.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|297527502|ref|YP_003669526.1| - 0.015 15.9 0.1 0.082 13.5 0.0 2.1 1 1 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|297527502|ref|YP_003669526.1| - 0.044 12.7 0.0 0.078 11.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_30 PF13604.6 gi|297527502|ref|YP_003669526.1| - 0.047 13.4 0.0 0.094 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|297527502|ref|YP_003669526.1| - 0.052 13.5 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|297527502|ref|YP_003669526.1| - 0.053 13.4 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Adeno_IVa2 PF02456.15 gi|297527502|ref|YP_003669526.1| - 0.065 12.0 0.5 0.12 11.2 0.1 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein T2SSE PF00437.20 gi|297527502|ref|YP_003669526.1| - 0.097 11.7 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_ATPase PF09818.9 gi|297527502|ref|YP_003669526.1| - 0.12 11.2 0.0 0.73 8.6 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF3987 PF13148.6 gi|297527502|ref|YP_003669526.1| - 0.13 11.2 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_33 PF13671.6 gi|297527502|ref|YP_003669526.1| - 0.2 11.8 0.1 0.5 10.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|297527503|ref|YP_003669527.1| - 1.1e-10 41.6 15.5 1.1e-10 41.6 15.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3981 PF13139.6 gi|297527503|ref|YP_003669527.1| - 0.053 13.9 1.6 6 7.3 0.0 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3981) BPD_transp_1 PF00528.22 gi|297527504|ref|YP_003669528.1| - 4.2e-08 33.2 26.2 4.2e-08 33.2 26.2 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Amastin PF07344.11 gi|297527504|ref|YP_003669528.1| - 1.1 9.0 5.8 3.3 7.5 5.7 1.9 1 1 1 2 2 2 0 Amastin surface glycoprotein PBP_like_2 PF12849.7 gi|297527505|ref|YP_003669529.1| - 6e-53 180.3 0.0 7.2e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|297527505|ref|YP_003669529.1| - 1e-16 61.8 0.8 2e-16 60.9 0.8 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|297527505|ref|YP_003669529.1| - 0.0014 17.7 0.0 0.015 14.4 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain PhoU PF01895.19 gi|297527506|ref|YP_003669530.1| - 1.5e-23 83.1 6.2 1.7e-18 66.8 2.0 2.7 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|297527506|ref|YP_003669530.1| - 6.5e-09 35.5 0.1 1.8e-08 34.1 0.1 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin GyrB_insert PF18053.1 gi|297527506|ref|YP_003669530.1| - 0.0035 17.2 0.8 0.0065 16.4 0.2 1.7 2 0 0 2 2 2 1 DNA gyrase B subunit insert domain Herpes_UL6 PF01763.16 gi|297527506|ref|YP_003669530.1| - 0.024 13.2 1.0 0.029 12.9 0.1 1.7 2 0 0 2 2 2 0 Herpesvirus UL6 like YicC_N PF03755.13 gi|297527506|ref|YP_003669530.1| - 0.035 14.6 0.4 0.12 12.8 0.1 2.0 2 0 0 2 2 2 0 YicC-like family, N-terminal region PspA_IM30 PF04012.12 gi|297527506|ref|YP_003669530.1| - 0.18 11.4 0.8 2.2 7.8 0.1 2.1 2 0 0 2 2 2 0 PspA/IM30 family MRPL52 PF18699.1 gi|297527506|ref|YP_003669530.1| - 0.43 10.8 3.0 1 9.6 0.3 2.7 3 0 0 3 3 3 0 Mitoribosomal protein mL52 CdvA PF18822.1 gi|297527506|ref|YP_003669530.1| - 0.68 9.8 9.5 0.97 9.3 1.0 2.8 3 0 0 3 3 3 0 CdvA-like coiled-coil domain TMF_DNA_bd PF12329.8 gi|297527506|ref|YP_003669530.1| - 7.2 6.7 10.3 0.29 11.1 3.5 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Aldo_ket_red PF00248.21 gi|297527507|ref|YP_003669531.1| - 6.9e-77 258.5 0.0 7.8e-77 258.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF2122 PF09895.9 gi|297527508|ref|YP_003669532.1| - 6.1e-28 97.3 0.1 7.7e-28 97.0 0.1 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Ldh_1_N PF00056.23 gi|297527508|ref|YP_003669532.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DNA_methylase PF00145.17 gi|297527509|ref|YP_003669533.1| - 2.1e-52 178.5 0.0 5.4e-35 121.3 0.0 2.1 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|297527509|ref|YP_003669533.1| - 0.0048 16.5 0.0 0.0088 15.6 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|297527509|ref|YP_003669533.1| - 0.061 12.9 0.0 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain TFIIE_alpha PF02002.17 gi|297527510|ref|YP_003669534.1| - 8e-11 41.7 2.4 8e-11 41.7 2.4 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|297527510|ref|YP_003669534.1| - 0.017 14.6 0.3 0.038 13.5 0.3 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|297527510|ref|YP_003669534.1| - 0.046 13.7 0.0 0.072 13.1 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NADHdh-2_N PF12155.8 gi|297527510|ref|YP_003669534.1| - 0.12 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 NADH dehydrogenase subunit 2 N-terminal Rad50_zn_hook PF04423.14 gi|297527510|ref|YP_003669534.1| - 0.43 10.4 6.8 0.63 9.9 0.2 3.3 3 0 0 3 3 3 0 Rad50 zinc hook motif Trm56 PF01994.16 gi|297527511|ref|YP_003669535.1| - 1.1e-50 170.5 0.0 1.5e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|297527511|ref|YP_003669535.1| - 0.055 12.8 0.3 8.2 5.8 0.0 2.2 1 1 1 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP MMR_HSR1 PF01926.23 gi|297527512|ref|YP_003669536.1| - 1.8e-18 66.7 0.2 4.4e-18 65.4 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|297527512|ref|YP_003669536.1| - 8e-16 58.4 8.0 1.8e-15 57.3 8.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|297527512|ref|YP_003669536.1| - 4.2e-11 43.4 0.3 1.1e-10 42.0 0.3 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|297527512|ref|YP_003669536.1| - 9.8e-09 34.9 0.5 2.2e-08 33.8 0.1 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|297527512|ref|YP_003669536.1| - 1.4e-08 34.6 2.3 5.2e-05 22.9 0.1 3.0 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|297527512|ref|YP_003669536.1| - 2.1e-08 33.8 0.6 7.2e-08 32.1 0.1 2.1 2 1 0 2 2 2 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|297527512|ref|YP_003669536.1| - 6.5e-06 26.2 0.9 0.017 15.0 0.2 3.2 3 0 0 3 3 3 2 RsgA GTPase SRPRB PF09439.10 gi|297527512|ref|YP_003669536.1| - 0.00021 20.8 0.0 0.00049 19.6 0.0 1.6 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|297527512|ref|YP_003669536.1| - 0.0052 16.4 0.1 0.023 14.3 0.0 2.0 2 1 0 2 2 2 1 Ras family PduV-EutP PF10662.9 gi|297527512|ref|YP_003669536.1| - 0.012 15.4 1.3 2.3 7.9 0.6 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|297527512|ref|YP_003669536.1| - 0.015 15.1 0.1 1.3 8.8 0.0 2.9 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|297527512|ref|YP_003669536.1| - 0.028 14.7 0.0 0.07 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|297527512|ref|YP_003669536.1| - 0.031 14.4 0.5 3.4 7.7 0.0 3.2 2 1 1 3 3 3 0 Dynamin family Roc PF08477.13 gi|297527512|ref|YP_003669536.1| - 0.031 14.5 0.1 0.35 11.1 0.1 2.5 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|297527512|ref|YP_003669536.1| - 0.062 12.9 7.3 1.3 8.6 0.4 3.2 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|297527512|ref|YP_003669536.1| - 0.068 13.2 6.6 0.25 11.4 2.4 3.0 2 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain Glyco_transf_54 PF04666.13 gi|297527512|ref|YP_003669536.1| - 0.12 11.2 1.2 0.3 9.9 0.0 2.1 3 0 0 3 3 3 0 N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region HTH_3 PF01381.22 gi|297527513|ref|YP_003669537.1| - 1.9e-09 37.4 2.8 2.9e-09 36.8 2.8 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|297527513|ref|YP_003669537.1| - 9.6e-09 35.5 2.7 9.6e-09 35.5 2.7 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|297527513|ref|YP_003669537.1| - 1.6e-06 28.0 1.6 2.9e-06 27.2 1.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|297527513|ref|YP_003669537.1| - 0.0014 18.4 1.2 0.0014 18.4 1.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain zinc_ribbon_2 PF13240.6 gi|297527513|ref|YP_003669537.1| - 0.035 13.8 0.9 2.7 7.8 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain MqsA_antitoxin PF15731.5 gi|297527513|ref|YP_003669537.1| - 0.052 13.7 4.1 0.51 10.4 0.1 2.5 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Pou PF00157.17 gi|297527513|ref|YP_003669537.1| - 0.1 12.6 0.3 0.22 11.5 0.3 1.6 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain DZR PF12773.7 gi|297527513|ref|YP_003669537.1| - 0.23 11.5 2.2 0.58 10.2 2.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon AAA PF00004.29 gi|297527514|ref|YP_003669538.1| - 5.9e-44 149.7 0.0 1.2e-43 148.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|297527514|ref|YP_003669538.1| - 4.9e-12 45.4 0.1 1.1e-11 44.3 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|297527514|ref|YP_003669538.1| - 2.2e-10 40.3 0.7 5.5e-10 39.1 0.7 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|297527514|ref|YP_003669538.1| - 6.6e-07 29.6 0.0 2e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|297527514|ref|YP_003669538.1| - 2.5e-06 28.0 0.3 0.00038 20.9 0.1 2.5 1 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|297527514|ref|YP_003669538.1| - 9.8e-06 25.4 0.0 2.8e-05 23.9 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|297527514|ref|YP_003669538.1| - 1.2e-05 25.3 0.1 5.2e-05 23.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Prot_ATP_OB_N PF17758.1 gi|297527514|ref|YP_003669538.1| - 1.9e-05 24.2 0.4 5.5e-05 22.7 0.4 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|297527514|ref|YP_003669538.1| - 0.00031 21.0 0.3 0.023 15.0 0.1 2.5 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|297527514|ref|YP_003669538.1| - 0.0014 18.0 0.0 0.0028 16.9 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|297527514|ref|YP_003669538.1| - 0.0017 18.4 0.1 0.0062 16.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.21 gi|297527514|ref|YP_003669538.1| - 0.0042 16.5 0.1 0.015 14.7 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|297527514|ref|YP_003669538.1| - 0.0043 16.2 0.1 0.011 14.9 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|297527514|ref|YP_003669538.1| - 0.005 17.3 0.1 0.023 15.1 0.1 2.1 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|297527514|ref|YP_003669538.1| - 0.006 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|297527514|ref|YP_003669538.1| - 0.0065 17.0 0.1 0.03 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|297527514|ref|YP_003669538.1| - 0.0066 16.7 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|297527514|ref|YP_003669538.1| - 0.0094 16.1 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|297527514|ref|YP_003669538.1| - 0.01 16.2 0.0 0.024 15.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|297527514|ref|YP_003669538.1| - 0.018 15.0 1.1 0.084 12.8 0.1 2.4 2 1 1 3 3 2 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|297527514|ref|YP_003669538.1| - 0.028 13.7 0.1 0.076 12.3 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin AAA_7 PF12775.7 gi|297527514|ref|YP_003669538.1| - 0.03 13.8 0.1 0.22 11.0 0.0 2.2 2 1 0 2 2 2 0 P-loop containing dynein motor region NACHT PF05729.12 gi|297527514|ref|YP_003669538.1| - 0.035 14.0 0.2 0.19 11.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain ATPase PF06745.13 gi|297527514|ref|YP_003669538.1| - 0.039 13.3 0.1 0.16 11.3 0.1 2.0 1 1 0 1 1 1 0 KaiC AAA_24 PF13479.6 gi|297527514|ref|YP_003669538.1| - 0.047 13.4 0.1 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain SKI PF01202.22 gi|297527514|ref|YP_003669538.1| - 0.071 13.2 0.3 4.4 7.4 0.1 2.6 2 1 0 2 2 2 0 Shikimate kinase NB-ARC PF00931.22 gi|297527514|ref|YP_003669538.1| - 0.075 12.2 0.1 0.19 10.8 0.0 1.7 2 0 0 2 2 1 0 NB-ARC domain Sigma54_activat PF00158.26 gi|297527514|ref|YP_003669538.1| - 0.083 12.6 0.1 0.54 10.0 0.0 2.3 4 0 0 4 4 3 0 Sigma-54 interaction domain TsaE PF02367.17 gi|297527514|ref|YP_003669538.1| - 0.083 12.9 0.0 0.2 11.7 0.0 1.6 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|297527514|ref|YP_003669538.1| - 0.088 13.3 0.0 0.22 12.0 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Rad17 PF03215.15 gi|297527514|ref|YP_003669538.1| - 0.098 12.6 0.1 0.28 11.1 0.1 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain Parvo_NS1 PF01057.17 gi|297527514|ref|YP_003669538.1| - 0.15 11.1 0.0 0.3 10.1 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|297527514|ref|YP_003669538.1| - 0.17 11.4 0.2 0.45 10.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain TGT_C2 PF14810.6 gi|297527515|ref|YP_003669539.1| - 1e-15 57.6 0.0 1.7e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|297527515|ref|YP_003669539.1| - 7.9e-11 41.8 0.0 2.5e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|297527515|ref|YP_003669539.1| - 0.0026 18.0 0.0 0.0049 17.1 0.0 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain PAC2 PF09754.9 gi|297527516|ref|YP_003669540.1| - 1.3e-35 123.4 0.0 1.6e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.18 gi|297527517|ref|YP_003669541.1| - 3.3e-61 207.4 0.0 4.5e-61 207.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|297527517|ref|YP_003669541.1| - 8.6e-07 28.9 0.5 2.1e-06 27.6 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) Lsm_C PF14894.6 gi|297527518|ref|YP_003669542.1| - 1.6e-28 98.3 0.6 3.5e-28 97.2 0.3 1.7 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.22 gi|297527518|ref|YP_003669542.1| - 5.1e-08 32.5 0.0 8.5e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|297527518|ref|YP_003669542.1| - 0.0011 19.1 0.0 0.002 18.2 0.0 1.5 1 1 0 1 1 1 1 Ataxin 2 SM domain Gemin6 PF06372.12 gi|297527518|ref|YP_003669542.1| - 0.0025 17.4 0.0 0.0035 16.9 0.0 1.3 1 0 0 1 1 1 1 Gemin6 protein RNA_pol_RpbG PF16992.5 gi|297527519|ref|YP_003669543.1| - 1.8e-16 60.3 1.4 2e-16 60.1 1.4 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|297527519|ref|YP_003669543.1| - 0.012 15.8 0.1 3.6 7.8 0.1 2.1 1 1 1 2 2 2 0 RNA polymerase Rpb8 DUF5599 PF18141.1 gi|297527519|ref|YP_003669543.1| - 0.062 13.5 0.0 0.11 12.7 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5599) DUF4718 PF15842.5 gi|297527520|ref|YP_003669544.1| - 0.018 14.8 0.1 0.022 14.6 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4718) DUF87 PF01935.17 gi|297527521|ref|YP_003669545.1| - 6e-24 85.4 1.9 9e-24 84.8 1.9 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|297527521|ref|YP_003669545.1| - 8.8e-10 38.0 0.1 1.1e-05 24.5 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|297527521|ref|YP_003669545.1| - 2.7e-09 36.2 0.0 0.0004 19.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DEAD PF00270.29 gi|297527521|ref|YP_003669545.1| - 5.5e-06 26.3 0.1 0.0078 16.0 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.18 gi|297527521|ref|YP_003669545.1| - 5.4e-05 22.7 0.0 9.9e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|297527521|ref|YP_003669545.1| - 0.00039 20.7 0.4 0.17 12.2 0.2 2.4 2 1 0 2 2 2 1 AAA domain T4SS-DNA_transf PF02534.14 gi|297527521|ref|YP_003669545.1| - 0.00058 18.8 0.1 0.041 12.7 0.1 2.1 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer AAA PF00004.29 gi|297527521|ref|YP_003669545.1| - 0.00074 20.0 0.2 0.43 11.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|297527521|ref|YP_003669545.1| - 0.0012 17.9 0.2 0.0033 16.4 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain ResIII PF04851.15 gi|297527521|ref|YP_003669545.1| - 0.0024 17.9 0.2 0.019 15.0 0.1 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|297527521|ref|YP_003669545.1| - 0.0051 17.1 0.1 0.011 16.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|297527521|ref|YP_003669545.1| - 0.0063 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|297527521|ref|YP_003669545.1| - 0.011 14.8 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|297527521|ref|YP_003669545.1| - 0.013 15.1 0.1 0.03 13.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region Microtub_bd PF16796.5 gi|297527521|ref|YP_003669545.1| - 0.026 14.5 0.1 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 Microtubule binding TraG-D_C PF12696.7 gi|297527521|ref|YP_003669545.1| - 0.028 14.4 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG SRP54 PF00448.22 gi|297527521|ref|YP_003669545.1| - 0.049 13.3 0.1 0.089 12.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|297527521|ref|YP_003669545.1| - 0.055 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin UvrD-helicase PF00580.21 gi|297527521|ref|YP_003669545.1| - 0.064 12.8 0.4 0.13 11.7 0.4 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain SWI2_SNF2 PF18766.1 gi|297527521|ref|YP_003669545.1| - 0.14 11.8 0.5 0.8 9.3 0.3 2.0 2 0 0 2 2 2 0 SWI2/SNF2 ATPase Cpn60_TCP1 PF00118.24 gi|297527522|ref|YP_003669546.1| - 7.7e-183 608.6 14.6 9e-183 608.4 14.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phage_fiber_2 PF03406.13 gi|297527522|ref|YP_003669546.1| - 0.038 13.5 0.2 12 5.5 0.1 3.1 2 0 0 2 2 2 0 Phage tail fibre repeat Spb1_C PF07780.12 gi|297527522|ref|YP_003669546.1| - 0.043 13.4 0.1 0.1 12.2 0.1 1.6 1 0 0 1 1 1 0 Spb1 C-terminal domain Dak2 PF02734.17 gi|297527522|ref|YP_003669546.1| - 0.15 11.9 4.8 0.22 11.4 0.5 2.6 2 1 0 2 2 2 0 DAK2 domain Ribosomal_S17e PF00833.18 gi|297527523|ref|YP_003669547.1| - 5.7e-21 74.7 1.6 6.2e-21 74.6 1.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 Sld5 PF05916.11 gi|297527523|ref|YP_003669547.1| - 0.096 13.2 0.2 0.1 13.0 0.2 1.1 1 0 0 1 1 1 0 GINS complex protein RNA_POL_M_15KD PF02150.16 gi|297527526|ref|YP_003669550.1| - 6.2e-07 29.2 0.5 9.5e-07 28.6 0.5 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|297527526|ref|YP_003669550.1| - 8.9e-06 25.3 1.7 2.2e-05 24.0 1.7 1.6 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|297527526|ref|YP_003669550.1| - 0.00024 20.7 5.3 0.17 11.7 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF3945 PF13101.6 gi|297527526|ref|YP_003669550.1| - 0.00029 20.5 0.1 0.00044 19.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3945) DZR PF12773.7 gi|297527526|ref|YP_003669550.1| - 0.0012 18.8 0.4 0.002 18.1 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|297527526|ref|YP_003669550.1| - 0.0014 18.4 3.2 0.0019 17.9 3.2 1.3 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.6 gi|297527526|ref|YP_003669550.1| - 0.0034 17.7 0.4 0.0053 17.1 0.4 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|297527526|ref|YP_003669550.1| - 0.0037 17.2 0.2 0.0079 16.1 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|297527526|ref|YP_003669550.1| - 0.0076 15.7 1.5 0.49 9.9 0.0 2.3 2 0 0 2 2 2 1 Mu-like prophage protein Com zf_UBZ PF18439.1 gi|297527526|ref|YP_003669550.1| - 0.0078 15.8 0.7 4.1 7.1 0.1 2.5 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|297527526|ref|YP_003669550.1| - 0.0082 16.0 1.9 0.11 12.4 0.3 2.2 2 0 0 2 2 2 1 Nudix N-terminal zf-TFIIB PF13453.6 gi|297527526|ref|YP_003669550.1| - 0.01 15.1 1.0 0.02 14.2 1.0 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-FPG_IleRS PF06827.14 gi|297527526|ref|YP_003669550.1| - 0.024 14.5 1.5 0.93 9.4 0.2 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS IBR PF01485.21 gi|297527526|ref|YP_003669550.1| - 0.026 14.7 0.4 0.041 14.1 0.4 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain TF_Zn_Ribbon PF08271.12 gi|297527526|ref|YP_003669550.1| - 0.042 13.4 1.2 0.11 12.1 1.2 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding eIF-5_eIF-2B PF01873.17 gi|297527526|ref|YP_003669550.1| - 0.053 13.4 0.6 0.13 12.1 0.2 1.7 2 0 0 2 2 2 0 Domain found in IF2B/IF5 YhfH PF14149.6 gi|297527526|ref|YP_003669550.1| - 0.085 12.8 0.9 7.1 6.7 0.0 2.4 2 0 0 2 2 2 0 YhfH-like protein zinc_ribbon_15 PF17032.5 gi|297527526|ref|YP_003669550.1| - 0.12 13.2 2.8 1.5 9.6 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon family Zn_ribbon_recom PF13408.6 gi|297527526|ref|YP_003669550.1| - 0.13 12.8 3.6 0.3 11.6 3.5 1.7 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.6 gi|297527526|ref|YP_003669550.1| - 0.15 11.5 3.3 1.4 8.4 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|297527526|ref|YP_003669550.1| - 0.34 10.9 2.4 0.69 9.9 2.1 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|297527526|ref|YP_003669550.1| - 0.53 10.4 3.4 13 5.9 0.9 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zn-ribbon_14 PF16503.5 gi|297527526|ref|YP_003669550.1| - 4.9 6.8 6.0 2.4 7.7 1.0 2.1 2 0 0 2 2 2 0 Zinc-ribbon ABC_tran PF00005.27 gi|297527527|ref|YP_003669551.1| - 1.4e-42 145.4 0.0 1.7e-21 77.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|297527527|ref|YP_003669551.1| - 8.1e-19 68.5 2.1 0.00073 19.4 0.4 4.2 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|297527527|ref|YP_003669551.1| - 1.7e-14 53.8 1.0 1.7e-05 24.4 0.0 3.3 3 0 0 3 3 3 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|297527527|ref|YP_003669551.1| - 3.9e-12 45.8 4.7 1e-11 44.5 4.7 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|297527527|ref|YP_003669551.1| - 6.4e-08 32.1 5.8 6.4e-08 32.1 5.8 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297527527|ref|YP_003669551.1| - 2.3e-07 30.8 4.6 5.9e-05 23.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|297527527|ref|YP_003669551.1| - 7.5e-07 29.2 0.9 0.014 15.1 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain Fer4_6 PF12837.7 gi|297527527|ref|YP_003669551.1| - 5.7e-06 26.2 13.6 0.00012 22.0 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|297527527|ref|YP_003669551.1| - 9.6e-06 26.1 17.0 0.00077 20.0 8.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|297527527|ref|YP_003669551.1| - 1.2e-05 25.3 9.1 2.6e-05 24.3 9.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|297527527|ref|YP_003669551.1| - 1.6e-05 25.5 1.2 0.13 12.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain Fer4_2 PF12797.7 gi|297527527|ref|YP_003669551.1| - 0.00012 21.9 1.5 0.00012 21.9 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|297527527|ref|YP_003669551.1| - 0.00017 21.3 0.7 0.15 11.8 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|297527527|ref|YP_003669551.1| - 0.00019 21.7 0.1 0.85 9.9 0.0 2.9 2 1 0 2 2 2 2 AAA domain Fer4_16 PF13484.6 gi|297527527|ref|YP_003669551.1| - 0.00023 22.0 5.7 0.0051 17.7 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_16 PF13191.6 gi|297527527|ref|YP_003669551.1| - 0.00034 21.0 0.1 0.41 11.0 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain Fer4_9 PF13187.6 gi|297527527|ref|YP_003669551.1| - 0.00035 20.7 5.7 0.0008 19.5 5.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|297527527|ref|YP_003669551.1| - 0.0004 20.2 1.8 0.086 12.6 0.1 2.3 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|297527527|ref|YP_003669551.1| - 0.00042 20.3 0.0 0.62 10.0 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_30 PF13604.6 gi|297527527|ref|YP_003669551.1| - 0.0021 17.8 0.1 2.1 8.0 0.0 2.5 2 1 0 2 2 2 2 AAA domain SRP54 PF00448.22 gi|297527527|ref|YP_003669551.1| - 0.0023 17.6 0.1 1.8 8.2 0.0 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|297527527|ref|YP_003669551.1| - 0.0033 17.6 0.0 1.8 8.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|297527527|ref|YP_003669551.1| - 0.0034 17.8 0.0 1.7 9.1 0.0 2.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|297527527|ref|YP_003669551.1| - 0.0037 17.5 0.3 5.4 7.3 0.0 3.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|297527527|ref|YP_003669551.1| - 0.017 14.5 0.3 3.7 6.9 0.0 3.1 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|297527527|ref|YP_003669551.1| - 0.03 14.2 1.4 6.9 6.6 0.2 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 gi|297527527|ref|YP_003669551.1| - 0.032 14.3 2.0 3 7.9 0.0 3.3 3 1 1 4 4 3 0 AAA domain ATP_bind_1 PF03029.17 gi|297527527|ref|YP_003669551.1| - 0.039 13.7 0.3 8.4 6.1 0.0 2.9 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|297527527|ref|YP_003669551.1| - 0.058 13.3 3.7 5 7.0 0.0 4.1 5 0 0 5 5 5 0 RsgA GTPase AAA_18 PF13238.6 gi|297527527|ref|YP_003669551.1| - 0.072 13.6 0.6 6.6 7.3 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|297527527|ref|YP_003669551.1| - 0.1 12.9 1.8 5.8 7.2 0.1 2.5 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|297527527|ref|YP_003669551.1| - 0.11 12.2 0.4 26 4.4 0.0 3.0 3 0 0 3 3 3 0 Thymidylate kinase NACHT PF05729.12 gi|297527527|ref|YP_003669551.1| - 0.12 12.3 2.1 5.2 6.9 0.1 2.5 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.6 gi|297527527|ref|YP_003669551.1| - 0.14 10.8 0.0 4.4 5.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|297527527|ref|YP_003669551.1| - 0.17 12.1 1.7 25 5.1 0.1 3.3 4 0 0 4 4 3 0 AAA domain RNA_helicase PF00910.22 gi|297527527|ref|YP_003669551.1| - 0.21 12.0 0.1 11 6.5 0.0 2.5 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|297527527|ref|YP_003669551.1| - 0.22 10.7 2.3 10 5.2 0.4 2.4 2 0 0 2 2 2 0 NB-ARC domain Fer4_17 PF13534.6 gi|297527527|ref|YP_003669551.1| - 0.49 11.0 7.2 0.083 13.4 1.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|297527527|ref|YP_003669551.1| - 0.98 9.3 6.3 8.9 6.2 0.1 3.5 4 0 0 4 4 4 0 NTPase Fer4_3 PF12798.7 gi|297527527|ref|YP_003669551.1| - 1.1 10.3 15.0 0.17 12.9 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|297527527|ref|YP_003669551.1| - 1.5 9.5 13.6 0.31 11.7 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|297527527|ref|YP_003669551.1| - 3 8.4 7.9 0.22 12.0 1.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain FBPase_3 PF01950.16 gi|297527528|ref|YP_003669552.1| - 9e-186 617.3 0.0 1e-185 617.1 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase TIM PF00121.18 gi|297527529|ref|YP_003669553.1| - 4.6e-16 58.9 0.0 4e-15 55.9 0.0 1.9 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|297527529|ref|YP_003669553.1| - 1.9e-05 24.1 0.7 3.5e-05 23.3 0.7 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|297527529|ref|YP_003669553.1| - 5.4e-05 22.5 0.0 0.00011 21.5 0.0 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.20 gi|297527529|ref|YP_003669553.1| - 6.4e-05 21.9 0.6 0.0051 15.7 0.2 2.6 3 1 0 3 3 3 2 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|297527529|ref|YP_003669553.1| - 0.0028 17.1 0.2 0.16 11.4 0.1 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|297527529|ref|YP_003669553.1| - 0.0038 16.3 0.4 0.015 14.4 0.3 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|297527529|ref|YP_003669553.1| - 0.024 14.0 0.3 0.031 13.7 0.3 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase CutC PF03932.14 gi|297527529|ref|YP_003669553.1| - 0.088 12.3 0.2 0.15 11.6 0.2 1.4 1 0 0 1 1 1 0 CutC family PK PF00224.21 gi|297527530|ref|YP_003669554.1| - 2.2e-92 309.6 2.6 2.8e-92 309.3 2.6 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|297527530|ref|YP_003669554.1| - 2e-07 31.3 0.0 5e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|297527530|ref|YP_003669554.1| - 0.00032 19.9 0.1 0.00052 19.2 0.1 1.3 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF3687 PF12459.8 gi|297527531|ref|YP_003669555.1| - 0.11 12.1 0.2 0.11 12.1 0.2 2.2 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein DUF485 PF04341.12 gi|297527531|ref|YP_003669555.1| - 4 7.4 8.6 12 6.0 1.1 2.1 1 1 0 2 2 2 0 Protein of unknown function, DUF485 DUF1805 PF08827.11 gi|297527532|ref|YP_003669556.1| - 6.5e-24 84.0 0.2 8.5e-24 83.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) DUF131 PF01998.17 gi|297527533|ref|YP_003669557.1| - 7e-16 57.6 13.0 7e-16 57.6 13.0 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 Saf_2TM PF18303.1 gi|297527533|ref|YP_003669557.1| - 0.25 10.9 4.3 0.76 9.3 0.0 2.0 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain KASH PF10541.9 gi|297527533|ref|YP_003669557.1| - 0.27 11.5 2.5 8.6 6.7 1.4 2.1 2 0 0 2 2 2 0 Nuclear envelope localisation domain DUF2207 PF09972.9 gi|297527533|ref|YP_003669557.1| - 0.59 8.8 8.1 0.78 8.4 8.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ost5 PF05251.12 gi|297527533|ref|YP_003669557.1| - 0.63 10.3 7.9 3.6 7.9 0.3 2.1 1 1 1 2 2 2 0 Oligosaccharyltransferase subunit 5 CcmH PF03918.14 gi|297527533|ref|YP_003669557.1| - 0.9 8.8 0.0 0.9 8.8 0.0 1.7 2 0 0 2 2 2 0 Cytochrome C biogenesis protein Sigma_reg_N PF13800.6 gi|297527533|ref|YP_003669557.1| - 1 9.7 7.6 2.9 8.3 4.8 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Baculo_11_kDa PF06143.11 gi|297527533|ref|YP_003669557.1| - 1.2 8.7 4.2 43 3.8 0.0 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF3784 PF12650.7 gi|297527533|ref|YP_003669557.1| - 4.1 7.7 16.0 1.2e+02 3.0 16.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) Orf78 PF06024.12 gi|297527533|ref|YP_003669557.1| - 6 7.2 7.0 0.55 10.6 1.2 2.0 2 0 0 2 2 2 0 Orf78 (ac78) Syndecan PF01034.20 gi|297527534|ref|YP_003669558.1| - 0.087 12.7 0.8 0.087 12.7 0.8 2.6 3 0 0 3 3 3 0 Syndecan domain DUF2070 PF09843.9 gi|297527534|ref|YP_003669558.1| - 0.28 9.4 7.8 0.34 9.1 7.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4199 PF13858.6 gi|297527534|ref|YP_003669558.1| - 3.4 8.0 14.1 0.16 12.3 6.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) CitMHS PF03600.16 gi|297527534|ref|YP_003669558.1| - 5.8 6.0 10.1 7.5 5.7 10.1 1.2 1 0 0 1 1 1 0 Citrate transporter DUF202 PF02656.15 gi|297527534|ref|YP_003669558.1| - 5.8 7.4 10.2 80 3.8 10.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF5320 PF17253.2 gi|297527535|ref|YP_003669559.1| - 9e-07 29.9 0.0 1.2e-06 29.5 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5320) Sipho_Gp157 PF05565.11 gi|297527535|ref|YP_003669559.1| - 0.013 15.5 2.9 0.015 15.3 2.9 1.0 1 0 0 1 1 1 0 Siphovirus Gp157 bZIP_1 PF00170.21 gi|297527535|ref|YP_003669559.1| - 0.019 15.0 3.8 0.025 14.7 3.8 1.1 1 0 0 1 1 1 0 bZIP transcription factor DUF4140 PF13600.6 gi|297527535|ref|YP_003669559.1| - 0.032 14.7 0.0 0.036 14.5 0.0 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) XhlA PF10779.9 gi|297527535|ref|YP_003669559.1| - 0.1 12.8 2.1 0.15 12.3 2.1 1.2 1 0 0 1 1 1 0 Haemolysin XhlA zf-TFIIB PF13453.6 gi|297527536|ref|YP_003669560.1| - 0.0031 16.8 0.9 0.082 12.3 0.2 2.2 2 0 0 2 2 2 1 Transcription factor zinc-finger DZR PF12773.7 gi|297527536|ref|YP_003669560.1| - 0.0037 17.3 0.1 0.0049 16.9 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|297527536|ref|YP_003669560.1| - 0.0038 16.7 1.7 1.3 8.6 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|297527536|ref|YP_003669560.1| - 0.006 16.3 3.7 0.25 11.1 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|297527536|ref|YP_003669560.1| - 0.0096 15.9 0.1 0.01 15.8 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|297527536|ref|YP_003669560.1| - 0.024 14.5 6.0 0.14 12.0 0.7 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.19 gi|297527536|ref|YP_003669560.1| - 0.028 14.2 4.4 0.075 12.8 1.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_RNApol_7kD PF03604.13 gi|297527536|ref|YP_003669560.1| - 0.031 13.9 1.1 0.94 9.2 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Spore_YhaL PF14147.6 gi|297527536|ref|YP_003669560.1| - 0.041 13.6 0.9 0.047 13.4 0.1 1.5 2 0 0 2 2 1 0 Sporulation protein YhaL SIR2 PF02146.17 gi|297527536|ref|YP_003669560.1| - 0.058 13.3 0.3 0.072 13.0 0.3 1.1 1 0 0 1 1 1 0 Sir2 family Nudix_N_2 PF14803.6 gi|297527536|ref|YP_003669560.1| - 0.059 13.3 0.4 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal PknG_rubred PF16919.5 gi|297527536|ref|YP_003669560.1| - 0.064 13.4 0.1 0.081 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain DUF1451 PF07295.11 gi|297527536|ref|YP_003669560.1| - 0.066 13.2 0.8 1.4 8.9 0.0 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain DUF2387 PF09526.10 gi|297527536|ref|YP_003669560.1| - 0.078 13.1 3.5 1.2 9.4 0.3 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Ogr_Delta PF04606.12 gi|297527536|ref|YP_003669560.1| - 0.087 12.8 0.5 0.44 10.6 0.1 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2089 PF09862.9 gi|297527536|ref|YP_003669560.1| - 0.1 12.7 0.3 1.1 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) DiS_P_DiS PF06750.13 gi|297527536|ref|YP_003669560.1| - 0.1 12.8 1.3 0.49 10.6 1.3 2.1 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Med26 PF08711.11 gi|297527536|ref|YP_003669560.1| - 0.12 12.5 0.0 0.42 10.7 0.0 2.2 1 1 0 1 1 1 0 TFIIS helical bundle-like domain Zn-ribbon_8 PF09723.10 gi|297527536|ref|YP_003669560.1| - 0.13 12.4 4.5 0.27 11.4 4.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|297527536|ref|YP_003669560.1| - 0.23 11.4 3.1 0.82 9.7 0.4 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin_2 PF18073.1 gi|297527536|ref|YP_003669560.1| - 0.31 10.8 3.3 4.7 7.0 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|297527536|ref|YP_003669560.1| - 0.42 10.1 5.9 3 7.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|297527536|ref|YP_003669560.1| - 0.79 9.4 3.0 6.2 6.5 0.3 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF5472 PF17566.2 gi|297527536|ref|YP_003669560.1| - 1.2 9.2 2.8 19 5.3 0.3 2.5 1 1 0 2 2 2 0 Family of unknown function (DUF5472) zf-H2C2_2 PF13465.6 gi|297527536|ref|YP_003669560.1| - 4.8 7.8 7.2 14 6.3 1.8 2.3 1 1 1 2 2 2 0 Zinc-finger double domain DUF1512 PF07431.12 gi|297527537|ref|YP_003669561.1| - 8.7e-149 495.3 4.4 9.9e-149 495.2 4.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) HTH_50 PF18024.1 gi|297527537|ref|YP_003669561.1| - 0.096 12.3 0.1 0.33 10.6 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain YMF19 PF02326.15 gi|297527537|ref|YP_003669561.1| - 0.21 12.4 4.1 0.21 12.4 1.9 2.1 1 1 1 2 2 2 0 Plant ATP synthase F0 DUF5618 PF18498.1 gi|297527537|ref|YP_003669561.1| - 0.51 10.6 2.4 2.2 8.5 0.2 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF5618) Peptidase_M24 PF00557.24 gi|297527538|ref|YP_003669562.1| - 1.4e-39 136.0 0.0 1.7e-39 135.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_3 PF13483.6 gi|297527539|ref|YP_003669563.1| - 3.8e-21 75.7 0.2 5.8e-21 75.1 0.2 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|297527539|ref|YP_003669563.1| - 9.1e-21 74.3 0.1 2.6e-20 72.8 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|297527539|ref|YP_003669563.1| - 1.6e-12 47.8 1.1 6.9e-12 45.8 1.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|297527539|ref|YP_003669563.1| - 0.05 13.1 0.2 0.096 12.2 0.0 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily tRNA-synt_1b PF00579.25 gi|297527541|ref|YP_003669565.1| - 5e-51 173.7 0.0 4.1e-50 170.8 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Toprim_4 PF13662.6 gi|297527542|ref|YP_003669566.1| - 7.1e-11 42.4 0.1 4.4e-10 39.9 0.1 2.4 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|297527542|ref|YP_003669566.1| - 8.7e-08 32.5 0.0 4.2e-07 30.3 0.0 2.1 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|297527542|ref|YP_003669566.1| - 1.8e-05 24.9 0.8 9.9e-05 22.5 0.0 2.7 2 1 0 2 2 2 1 Toprim domain Toprim_3 PF13362.6 gi|297527542|ref|YP_003669566.1| - 0.017 15.4 0.1 0.084 13.2 0.0 2.2 2 0 0 2 2 2 0 Toprim domain Spore_III_AB PF09548.10 gi|297527542|ref|YP_003669566.1| - 0.043 13.9 0.6 0.47 10.6 0.1 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) PBSX_XtrA PF17356.2 gi|297527542|ref|YP_003669566.1| - 0.094 12.6 0.4 2.1 8.3 0.0 2.8 3 0 0 3 3 3 0 Phage-like element PBSX protein XtrA YtxH PF12732.7 gi|297527542|ref|YP_003669566.1| - 0.4 11.2 7.9 5.4 7.6 1.7 2.8 2 0 0 2 2 2 0 YtxH-like protein Ribosomal_L12 PF00542.19 gi|297527542|ref|YP_003669566.1| - 2.1 8.8 12.9 0.26 11.7 1.7 3.4 2 1 2 4 4 4 0 Ribosomal protein L7/L12 C-terminal domain DNA_pol_B PF00136.21 gi|297527543|ref|YP_003669567.1| - 1.3e-73 248.3 0.0 2.1e-73 247.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|297527543|ref|YP_003669567.1| - 5.4e-38 131.0 0.9 5.9e-36 124.3 0.9 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|297527543|ref|YP_003669567.1| - 6.3e-08 32.8 0.0 1.5e-07 31.5 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|297527543|ref|YP_003669567.1| - 9.1e-05 22.2 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|297527543|ref|YP_003669567.1| - 0.0001 21.3 0.4 0.00089 18.2 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral GH101_N PF17995.1 gi|297527543|ref|YP_003669567.1| - 0.12 12.0 0.0 0.55 9.8 0.0 1.9 2 0 0 2 2 2 0 Endo-alpha-N-acetylgalactosaminidase N-terminal eRF1_1 PF03463.15 gi|297527544|ref|YP_003669568.1| - 1.1e-29 103.1 0.0 1.8e-29 102.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|297527544|ref|YP_003669568.1| - 3.5e-19 69.3 0.1 1.2e-18 67.6 0.0 2.0 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|297527544|ref|YP_003669568.1| - 1.7e-10 41.3 0.1 3.3e-10 40.4 0.1 1.5 1 0 0 1 1 1 1 eRF1 domain 2 UTP15_C PF09384.10 gi|297527544|ref|YP_003669568.1| - 0.073 12.8 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 UTP15 C terminal NTP_transf_2 PF01909.23 gi|297527545|ref|YP_003669569.1| - 1.6e-06 28.3 0.0 4.6e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|297527545|ref|YP_003669569.1| - 0.0001 22.3 0.0 0.0002 21.4 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_24 PF13412.6 gi|297527545|ref|YP_003669569.1| - 0.0031 17.1 0.9 0.068 12.7 0.1 2.6 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|297527545|ref|YP_003669569.1| - 0.16 11.8 1.2 0.44 10.4 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Peptidase_M50 PF02163.22 gi|297527546|ref|YP_003669570.1| - 1.7e-14 53.7 12.9 4.9e-14 52.2 10.4 2.7 2 1 0 2 2 2 1 Peptidase family M50 PDZ_6 PF17820.1 gi|297527546|ref|YP_003669570.1| - 2.8e-07 30.3 0.0 4.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|297527546|ref|YP_003669570.1| - 0.00017 21.9 0.0 0.00037 20.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|297527546|ref|YP_003669570.1| - 0.0037 17.5 0.1 0.0072 16.6 0.1 1.4 1 0 0 1 1 1 1 PDZ domain DUF1129 PF06570.11 gi|297527546|ref|YP_003669570.1| - 0.71 9.3 7.4 4.6 6.7 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) PALP PF00291.25 gi|297527547|ref|YP_003669571.1| - 1e-56 192.5 0.0 1.2e-56 192.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.6 gi|297527547|ref|YP_003669571.1| - 0.012 15.3 3.3 2.6 7.9 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|297527547|ref|YP_003669571.1| - 0.033 13.7 0.5 0.96 9.0 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|297527547|ref|YP_003669571.1| - 0.045 13.1 1.5 1.1 8.7 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger HypA PF01155.19 gi|297527547|ref|YP_003669571.1| - 0.063 13.3 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3791 PF12668.7 gi|297527547|ref|YP_003669571.1| - 0.12 12.5 0.0 0.39 10.8 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) A2L_zn_ribbon PF08792.10 gi|297527547|ref|YP_003669571.1| - 0.12 12.1 1.0 0.91 9.3 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin_2 PF18073.1 gi|297527547|ref|YP_003669571.1| - 0.18 11.5 12.1 6.2 6.7 12.5 2.3 1 1 1 2 2 2 0 Rubredoxin metal binding domain DNA_ligase_ZBD PF03119.16 gi|297527547|ref|YP_003669571.1| - 0.19 11.8 1.8 2.7 8.1 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain NRDD PF13597.6 gi|297527547|ref|YP_003669571.1| - 0.22 10.3 0.4 0.33 9.7 0.4 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-NADH-PPase PF09297.11 gi|297527547|ref|YP_003669571.1| - 0.28 10.9 2.8 2 8.1 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|297527547|ref|YP_003669571.1| - 0.32 10.6 1.0 9.7 5.9 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|297527547|ref|YP_003669571.1| - 0.55 10.2 2.3 0.76 9.7 0.8 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|297527547|ref|YP_003669571.1| - 0.6 9.6 6.5 1.9 8.0 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|297527547|ref|YP_003669571.1| - 0.7 9.9 4.8 3.1 7.8 0.4 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DUF4379 PF14311.6 gi|297527547|ref|YP_003669571.1| - 1 9.8 9.1 13 6.2 10.0 2.1 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-RanBP PF00641.18 gi|297527547|ref|YP_003669571.1| - 1.4 8.3 5.7 9 5.7 0.9 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Glyco_transf_4 PF13439.6 gi|297527548|ref|YP_003669572.1| - 0.00093 19.2 0.0 0.29 11.1 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_tran_28_C PF04101.16 gi|297527548|ref|YP_003669572.1| - 0.0017 18.4 0.0 0.0037 17.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_4_4 PF13579.6 gi|297527548|ref|YP_003669572.1| - 0.0098 16.3 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PALP PF00291.25 gi|297527548|ref|YP_003669572.1| - 0.012 15.0 0.0 0.028 13.8 0.0 1.5 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Alg14 PF08660.11 gi|297527548|ref|YP_003669572.1| - 0.016 15.2 0.0 0.037 14.0 0.0 1.6 1 1 0 1 1 1 0 Oligosaccharide biosynthesis protein Alg14 like Kelch_1 PF01344.25 gi|297527548|ref|YP_003669572.1| - 0.099 12.2 0.0 10 5.8 0.0 2.9 2 0 0 2 2 2 0 Kelch motif PMT_2 PF13231.6 gi|297527550|ref|YP_003669574.1| - 1.2e-09 38.6 18.3 1.2e-09 38.6 18.3 3.8 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|297527550|ref|YP_003669574.1| - 3.7e-05 23.4 29.0 0.00015 21.5 17.1 3.4 2 2 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1097 PF06496.11 gi|297527550|ref|YP_003669574.1| - 0.017 15.2 0.2 0.017 15.2 0.2 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF1097) Alpha_Helical PF18489.1 gi|297527551|ref|YP_003669575.1| - 3.5e-20 72.5 0.9 6.8e-20 71.5 0.9 1.5 1 1 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|297527551|ref|YP_003669575.1| - 3.4e-06 27.1 0.0 6.3e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain RHH_1 PF01402.21 gi|297527552|ref|YP_003669576.1| - 6.6e-10 38.6 0.2 9e-10 38.1 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|297527552|ref|YP_003669576.1| - 3.4e-05 24.0 0.0 3.7e-05 23.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|297527552|ref|YP_003669576.1| - 0.0002 21.7 0.0 0.00021 21.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|297527552|ref|YP_003669576.1| - 0.0048 16.8 0.0 0.007 16.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB ASCH PF04266.14 gi|297527553|ref|YP_003669577.1| - 0.035 14.7 0.1 0.05 14.2 0.1 1.3 1 0 0 1 1 1 0 ASCH domain GCD14 PF08704.10 gi|297527554|ref|YP_003669578.1| - 3.7e-33 115.2 0.0 1.4e-31 110.0 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|297527554|ref|YP_003669578.1| - 3.9e-14 52.7 0.0 5.1e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|297527554|ref|YP_003669578.1| - 1.3e-10 41.4 0.0 2e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|297527554|ref|YP_003669578.1| - 6.8e-10 39.5 0.0 1.2e-09 38.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297527554|ref|YP_003669578.1| - 5.6e-07 30.1 0.0 9.6e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|297527554|ref|YP_003669578.1| - 7.2e-07 28.8 0.0 1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14_N PF14801.6 gi|297527554|ref|YP_003669578.1| - 7.9e-05 22.4 0.1 0.00014 21.6 0.1 1.4 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltr_RsmB-F PF01189.17 gi|297527554|ref|YP_003669578.1| - 0.00012 21.8 0.0 0.00017 21.3 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_24 PF13578.6 gi|297527554|ref|YP_003669578.1| - 0.00015 22.7 0.0 0.0003 21.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|297527554|ref|YP_003669578.1| - 0.00016 22.3 0.0 0.00048 20.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|297527554|ref|YP_003669578.1| - 0.00032 19.9 0.0 0.00062 19.0 0.0 1.5 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.6 gi|297527554|ref|YP_003669578.1| - 0.0011 19.0 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|297527554|ref|YP_003669578.1| - 0.003 17.0 0.0 0.0048 16.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|297527554|ref|YP_003669578.1| - 0.0044 16.5 0.0 0.0067 15.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|297527554|ref|YP_003669578.1| - 0.0046 16.9 0.0 0.0098 15.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|297527554|ref|YP_003669578.1| - 0.0058 16.2 0.0 0.024 14.2 0.0 1.8 2 1 0 2 2 2 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.20 gi|297527554|ref|YP_003669578.1| - 0.15 11.1 0.0 0.3 10.1 0.0 1.4 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|297527554|ref|YP_003669578.1| - 0.16 11.8 0.0 0.85 9.4 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|297527554|ref|YP_003669578.1| - 0.22 10.8 0.0 0.27 10.5 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2129 PF09902.9 gi|297527554|ref|YP_003669578.1| - 0.57 10.3 2.7 2.3 8.3 0.1 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2129) PrmA PF06325.13 gi|297527555|ref|YP_003669579.1| - 1.6e-11 44.1 0.4 2e-11 43.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|297527555|ref|YP_003669579.1| - 3.7e-11 43.0 0.0 4.4e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|297527555|ref|YP_003669579.1| - 2.3e-09 37.8 0.0 3.1e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|297527555|ref|YP_003669579.1| - 1.2e-06 28.5 0.1 1.7e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|297527555|ref|YP_003669579.1| - 6.8e-06 25.9 1.5 0.00045 20.0 1.5 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|297527555|ref|YP_003669579.1| - 9.6e-06 25.2 0.0 1.3e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|297527555|ref|YP_003669579.1| - 7.1e-05 22.4 0.0 7.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|297527555|ref|YP_003669579.1| - 8.2e-05 23.3 0.0 0.00011 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|297527555|ref|YP_003669579.1| - 0.00018 22.1 0.0 0.00027 21.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|297527555|ref|YP_003669579.1| - 0.00027 20.5 0.3 0.0016 18.0 0.3 2.2 1 1 0 1 1 1 1 Histone methylation protein DOT1 Met_10 PF02475.16 gi|297527555|ref|YP_003669579.1| - 0.00029 20.6 0.1 0.00035 20.4 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein CMAS PF02353.20 gi|297527555|ref|YP_003669579.1| - 0.00049 19.5 0.0 0.00058 19.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|297527555|ref|YP_003669579.1| - 0.00058 19.4 0.1 0.00076 19.0 0.1 1.1 1 0 0 1 1 1 1 Putative methyltransferase TehB PF03848.14 gi|297527555|ref|YP_003669579.1| - 0.00086 18.8 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|297527555|ref|YP_003669579.1| - 0.0022 17.8 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|297527555|ref|YP_003669579.1| - 0.0031 17.1 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|297527555|ref|YP_003669579.1| - 0.013 15.3 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_Mtase PF02384.16 gi|297527555|ref|YP_003669579.1| - 0.029 13.7 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_32 PF13679.6 gi|297527555|ref|YP_003669579.1| - 0.034 14.1 0.0 0.04 13.9 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|297527555|ref|YP_003669579.1| - 0.054 13.2 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 DNA methylase Ribosomal_S26e PF01283.19 gi|297527558|ref|YP_003669582.1| - 1.3e-23 83.5 2.4 1.4e-23 83.4 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|297527558|ref|YP_003669582.1| - 9.3e-05 22.5 0.2 0.0033 17.6 0.1 2.3 2 0 0 2 2 2 1 C4-type zinc ribbon domain Sgf11 PF08209.11 gi|297527558|ref|YP_003669582.1| - 0.089 12.4 0.2 0.089 12.4 0.2 1.7 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) KOW PF00467.29 gi|297527558|ref|YP_003669582.1| - 0.1 12.6 0.6 0.23 11.5 0.6 1.6 1 0 0 1 1 1 0 KOW motif Auto_anti-p27 PF06677.12 gi|297527558|ref|YP_003669582.1| - 0.69 10.1 6.2 2.1 8.6 0.6 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_pol_B PF00136.21 gi|297527559|ref|YP_003669583.1| - 2.1e-50 171.8 0.4 3.9e-50 170.9 0.4 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|297527559|ref|YP_003669583.1| - 1.9e-27 96.3 1.3 4.1e-27 95.2 1.3 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|297527559|ref|YP_003669583.1| - 2.8e-07 30.7 0.2 3.8e-06 27.0 0.0 3.0 3 1 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|297527559|ref|YP_003669583.1| - 5.8e-05 22.9 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF1744 PF08490.12 gi|297527559|ref|YP_003669583.1| - 0.0084 14.7 0.0 0.016 13.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1744) HTH_3 PF01381.22 gi|297527559|ref|YP_003669583.1| - 0.045 13.8 0.7 11 6.2 0.1 3.2 3 0 0 3 3 3 0 Helix-turn-helix YscO PF07321.12 gi|297527559|ref|YP_003669583.1| - 0.064 13.2 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Type III secretion protein YscO NAPRTase_C PF17956.1 gi|297527559|ref|YP_003669583.1| - 0.76 10.2 2.6 4.8 7.7 0.2 2.9 2 1 0 2 2 2 0 Nicotinate phosphoribosyltransferase C-terminal domain NAC PF01849.18 gi|297527560|ref|YP_003669584.1| - 4.8e-15 55.3 0.4 4.8e-15 55.3 0.4 1.6 2 1 1 3 3 3 1 NAC domain HOIP-UBA PF16678.5 gi|297527560|ref|YP_003669584.1| - 0.0046 17.0 0.1 0.0067 16.5 0.1 1.4 1 0 0 1 1 1 1 HOIP UBA domain pair CUE PF02845.16 gi|297527560|ref|YP_003669584.1| - 0.021 14.5 0.0 9.9 6.0 0.0 3.0 2 1 1 3 3 3 0 CUE domain CsgE PF10627.9 gi|297527560|ref|YP_003669584.1| - 0.051 13.8 0.2 0.063 13.5 0.2 1.3 1 0 0 1 1 1 0 Curli assembly protein CsgE DUF1967 PF09269.11 gi|297527560|ref|YP_003669584.1| - 0.099 12.6 0.8 4.7 7.2 0.1 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF1967) BppL_N PF18338.1 gi|297527560|ref|YP_003669584.1| - 0.17 11.7 0.3 0.34 10.8 0.3 1.4 1 0 0 1 1 1 0 Lower baseplate protein N-terminal domain Beta-Casp PF10996.8 gi|297527561|ref|YP_003669585.1| - 1.5e-17 63.9 0.0 3.1e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|297527561|ref|YP_003669585.1| - 1e-10 41.4 0.0 2.2e-10 40.3 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|297527561|ref|YP_003669585.1| - 4.8e-10 39.8 0.5 7.8e-10 39.1 0.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|297527561|ref|YP_003669585.1| - 8.5e-10 38.4 0.1 1.8e-09 37.3 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|297527561|ref|YP_003669585.1| - 7.2e-08 32.2 0.0 2.2e-07 30.6 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|297527561|ref|YP_003669585.1| - 0.0024 17.8 0.0 0.0063 16.4 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Rrf2 PF02082.20 gi|297527563|ref|YP_003669587.1| - 0.00064 20.0 0.0 0.00093 19.5 0.0 1.3 1 1 0 1 1 1 1 Transcriptional regulator IF2_N PF04760.15 gi|297527563|ref|YP_003669587.1| - 0.0024 17.6 0.0 0.0053 16.6 0.0 1.6 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region Fe_dep_repress PF01325.19 gi|297527563|ref|YP_003669587.1| - 0.0036 17.5 0.0 0.008 16.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF2774 PF11242.8 gi|297527563|ref|YP_003669587.1| - 0.012 15.8 0.0 0.078 13.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2774) MarR_2 PF12802.7 gi|297527563|ref|YP_003669587.1| - 0.016 15.0 0.1 0.023 14.6 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|297527563|ref|YP_003669587.1| - 0.051 13.4 0.1 0.079 12.8 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|297527563|ref|YP_003669587.1| - 0.084 12.8 0.0 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|297527563|ref|YP_003669587.1| - 0.097 12.2 0.0 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|297527563|ref|YP_003669587.1| - 0.098 12.5 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GTP_EFTU PF00009.27 gi|297527564|ref|YP_003669588.1| - 4.1e-63 212.5 0.1 5.9e-63 211.9 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|297527564|ref|YP_003669588.1| - 1.3e-29 102.4 0.1 1.2e-28 99.3 0.0 2.4 1 1 1 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|297527564|ref|YP_003669588.1| - 4.6e-24 84.3 0.0 1.1e-23 83.1 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|297527564|ref|YP_003669588.1| - 6.8e-21 74.1 0.0 1.7e-20 72.8 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|297527564|ref|YP_003669588.1| - 3.2e-13 49.8 0.1 9.3e-13 48.4 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|297527564|ref|YP_003669588.1| - 2.1e-05 24.5 0.1 5.4e-05 23.3 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|297527564|ref|YP_003669588.1| - 0.16 11.5 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Ras family RsgA_GTPase PF03193.16 gi|297527564|ref|YP_003669588.1| - 0.26 11.2 0.7 0.84 9.5 0.2 1.9 1 1 1 2 2 2 0 RsgA GTPase DHH PF01368.20 gi|297527565|ref|YP_003669589.1| - 3.5e-10 40.0 0.0 6.6e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|297527565|ref|YP_003669589.1| - 6.9e-08 33.0 0.7 1.7e-07 31.8 0.7 1.6 1 0 0 1 1 1 1 DHHA1 domain DUF155 PF02582.14 gi|297527565|ref|YP_003669589.1| - 0.072 13.2 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised ACR, YagE family COG1723 DUF2482 PF10655.9 gi|297527566|ref|YP_003669590.1| - 0.0088 16.5 0.5 0.015 15.8 0.2 1.6 1 1 0 1 1 1 1 Hypothetical protein of unknown function (DUF2482) SCAI PF12070.8 gi|297527566|ref|YP_003669590.1| - 0.074 11.9 0.0 0.08 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein SCAI Prefoldin_2 PF01920.20 gi|297527567|ref|YP_003669591.1| - 9.4e-21 73.8 14.8 1.1e-20 73.6 14.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit DASH_Dad3 PF08656.10 gi|297527567|ref|YP_003669591.1| - 0.0016 18.5 1.7 0.0016 18.5 1.7 2.4 1 1 1 2 2 2 1 DASH complex subunit Dad3 Prefoldin PF02996.17 gi|297527567|ref|YP_003669591.1| - 0.0043 17.0 10.1 0.27 11.2 0.1 2.5 1 1 1 2 2 2 2 Prefoldin subunit LcrG PF07216.12 gi|297527567|ref|YP_003669591.1| - 0.0069 16.3 1.5 0.35 10.8 0.3 2.2 2 0 0 2 2 2 1 LcrG protein TPR_MLP1_2 PF07926.12 gi|297527567|ref|YP_003669591.1| - 0.0097 16.0 10.0 0.064 13.3 3.6 2.1 1 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein TMF_TATA_bd PF12325.8 gi|297527567|ref|YP_003669591.1| - 0.015 15.5 9.9 0.77 10.0 3.5 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding PCRF PF03462.18 gi|297527567|ref|YP_003669591.1| - 0.016 15.0 3.8 0.025 14.5 3.8 1.3 1 0 0 1 1 1 0 PCRF domain FlaC_arch PF05377.11 gi|297527567|ref|YP_003669591.1| - 0.023 15.1 8.2 0.2 12.1 2.6 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) FliD_C PF07195.12 gi|297527567|ref|YP_003669591.1| - 0.035 13.5 3.2 0.055 12.9 3.2 1.3 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Prefoldin_3 PF13758.6 gi|297527567|ref|YP_003669591.1| - 0.036 14.1 7.5 0.065 13.3 7.5 1.4 1 1 0 1 1 1 0 Prefoldin subunit ZapB PF06005.12 gi|297527567|ref|YP_003669591.1| - 0.063 13.7 11.0 1.2 9.7 0.4 2.2 2 0 0 2 2 2 0 Cell division protein ZapB APG6_N PF17675.1 gi|297527567|ref|YP_003669591.1| - 0.082 13.4 14.4 0.52 10.9 2.2 2.0 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF4094 PF13334.6 gi|297527567|ref|YP_003669591.1| - 0.085 13.3 6.4 0.15 12.5 2.3 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4094) E3_UbLigase_EDD PF11547.8 gi|297527567|ref|YP_003669591.1| - 0.11 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD FapA PF03961.13 gi|297527567|ref|YP_003669591.1| - 0.18 10.4 9.5 1.4 7.4 9.5 1.9 1 1 0 1 1 1 0 Flagellar Assembly Protein A BLOC1_2 PF10046.9 gi|297527567|ref|YP_003669591.1| - 0.27 11.5 11.4 4.7 7.6 3.2 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TFA2_Winged_2 PF18121.1 gi|297527567|ref|YP_003669591.1| - 0.28 10.9 6.4 3.7 7.3 2.5 3.3 1 1 1 2 2 2 0 TFA2 Winged helix domain 2 F_actin_bund_C PF18060.1 gi|297527567|ref|YP_003669591.1| - 0.3 11.2 4.4 0.074 13.2 1.4 1.6 2 0 0 2 2 1 0 F actin bundling C terminal Tektin PF03148.14 gi|297527567|ref|YP_003669591.1| - 0.31 9.7 11.5 1.4 7.6 1.0 2.0 1 1 1 2 2 2 0 Tektin family DUF4407 PF14362.6 gi|297527567|ref|YP_003669591.1| - 0.31 10.3 3.1 0.64 9.3 3.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Cortex-I_coil PF09304.10 gi|297527567|ref|YP_003669591.1| - 0.33 11.2 12.2 9.9 6.4 6.0 2.4 1 1 1 2 2 2 0 Cortexillin I, coiled coil Occludin_ELL PF07303.13 gi|297527567|ref|YP_003669591.1| - 0.36 11.6 7.3 1.2 9.9 7.2 1.8 1 1 0 1 1 1 0 Occludin homology domain DUF16 PF01519.16 gi|297527567|ref|YP_003669591.1| - 0.67 10.5 9.6 3.8 8.1 9.6 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 HAUS6_N PF14661.6 gi|297527567|ref|YP_003669591.1| - 0.71 9.4 5.4 1.1 8.8 1.9 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF4140 PF13600.6 gi|297527567|ref|YP_003669591.1| - 0.73 10.3 7.2 5.8 7.4 0.6 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Seryl_tRNA_N PF02403.22 gi|297527567|ref|YP_003669591.1| - 0.75 10.0 11.5 5.3 7.3 0.2 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ABC_tran_CTD PF16326.5 gi|297527567|ref|YP_003669591.1| - 1 9.6 15.4 0.4 11.0 2.5 3.1 3 0 0 3 3 3 0 ABC transporter C-terminal domain Vir_act_alpha_C PF10400.9 gi|297527567|ref|YP_003669591.1| - 1.2 9.9 9.9 0.49 11.1 3.0 2.4 1 1 1 2 2 2 0 Virulence activator alpha C-term Macoilin PF09726.9 gi|297527567|ref|YP_003669591.1| - 1.2 7.6 7.1 1.5 7.3 7.1 1.1 1 0 0 1 1 1 0 Macoilin family FTA4 PF13093.6 gi|297527567|ref|YP_003669591.1| - 1.6 8.6 9.4 12 5.8 9.4 1.9 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 FlxA PF14282.6 gi|297527567|ref|YP_003669591.1| - 1.6 8.7 6.6 0.45 10.5 0.9 2.2 2 0 0 2 2 2 0 FlxA-like protein Allexi_40kDa PF05549.11 gi|297527567|ref|YP_003669591.1| - 1.7 8.1 4.7 2.2 7.7 2.7 1.7 1 1 1 2 2 2 0 Allexivirus 40kDa protein DASH_Spc34 PF08657.10 gi|297527567|ref|YP_003669591.1| - 1.9 8.2 8.6 6.1 6.6 8.6 1.7 1 1 0 1 1 1 0 DASH complex subunit Spc34 UPF0184 PF03670.13 gi|297527567|ref|YP_003669591.1| - 2.1 8.8 4.5 15 6.0 0.8 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) Fib_alpha PF08702.10 gi|297527567|ref|YP_003669591.1| - 2.2 8.5 6.7 3.3 7.9 6.7 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|297527567|ref|YP_003669591.1| - 2.2 7.5 10.1 4.7 6.5 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Nsp1_C PF05064.13 gi|297527567|ref|YP_003669591.1| - 2.3 8.0 10.9 4.4 7.1 1.8 2.2 1 1 1 2 2 2 0 Nsp1-like C-terminal region DUF5339 PF17274.2 gi|297527567|ref|YP_003669591.1| - 2.3 9.1 5.9 0.57 11.1 1.2 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF5339) MerR-DNA-bind PF09278.11 gi|297527567|ref|YP_003669591.1| - 3.2 8.3 9.6 12 6.5 0.7 2.4 2 1 0 2 2 2 0 MerR, DNA binding DUF4635 PF15466.6 gi|297527567|ref|YP_003669591.1| - 3.5 7.2 10.5 2.6 7.5 4.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) Sec2p PF06428.11 gi|297527567|ref|YP_003669591.1| - 3.9 7.5 12.6 8.7 6.4 4.3 2.4 2 1 0 2 2 2 0 GDP/GTP exchange factor Sec2p BST2 PF16716.5 gi|297527567|ref|YP_003669591.1| - 4.2 8.0 9.8 15 6.2 4.7 2.3 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 bZIP_1 PF00170.21 gi|297527567|ref|YP_003669591.1| - 5.4 7.2 11.6 2.3 8.4 6.6 2.2 2 1 0 2 2 2 0 bZIP transcription factor DUF5320 PF17253.2 gi|297527567|ref|YP_003669591.1| - 5.9 8.0 7.3 27 5.9 2.8 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5320) Cep57_MT_bd PF06657.13 gi|297527567|ref|YP_003669591.1| - 8.1 7.0 13.2 3.3 8.2 0.8 3.0 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 NuA4 PF09340.10 gi|297527567|ref|YP_003669591.1| - 8.5 6.3 8.8 2 8.4 2.6 2.5 1 1 1 2 2 2 0 Histone acetyltransferase subunit NuA4 Pcc1 PF09341.10 gi|297527568|ref|YP_003669592.1| - 4.9e-05 23.4 0.0 5.8e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_L37ae PF01780.19 gi|297527570|ref|YP_003669594.1| - 1.7e-32 111.3 3.3 1.9e-32 111.2 3.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|297527570|ref|YP_003669594.1| - 1e-05 25.4 1.8 1.5e-05 24.8 1.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|297527570|ref|YP_003669594.1| - 0.0009 19.1 0.3 0.0012 18.8 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|297527570|ref|YP_003669594.1| - 0.0018 18.6 0.5 0.0029 18.0 0.5 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|297527570|ref|YP_003669594.1| - 0.0023 17.4 0.1 0.0031 17.0 0.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|297527570|ref|YP_003669594.1| - 0.0037 16.9 2.7 0.0062 16.2 2.7 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ISL3 PF14690.6 gi|297527570|ref|YP_003669594.1| - 0.031 14.9 1.0 1.2 9.8 0.3 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_13 PF17977.1 gi|297527570|ref|YP_003669594.1| - 0.049 13.8 0.8 0.063 13.4 0.8 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Zn_ribbon_SprT PF17283.2 gi|297527570|ref|YP_003669594.1| - 0.067 13.1 3.1 0.14 12.1 3.1 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DUF4379 PF14311.6 gi|297527570|ref|YP_003669594.1| - 0.088 13.2 2.1 0.47 10.9 0.5 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain Sgf11 PF08209.11 gi|297527570|ref|YP_003669594.1| - 0.094 12.3 0.7 2.7 7.6 0.0 2.8 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) A2L_zn_ribbon PF08792.10 gi|297527570|ref|YP_003669594.1| - 0.14 11.9 1.3 3.8 7.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|297527570|ref|YP_003669594.1| - 0.64 10.4 8.1 3.5 8.0 8.1 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|297527570|ref|YP_003669594.1| - 2.1 7.9 5.9 3 7.4 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|297527570|ref|YP_003669594.1| - 2.7 7.8 9.0 11 5.9 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNase_PH PF01138.21 gi|297527571|ref|YP_003669595.1| - 1.2e-24 87.3 0.0 5.1e-24 85.3 0.0 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|297527571|ref|YP_003669595.1| - 4.2e-11 42.7 1.0 4.2e-11 42.7 1.0 2.0 3 0 0 3 3 3 1 3' exoribonuclease family, domain 2 Sipho_Gp157 PF05565.11 gi|297527571|ref|YP_003669595.1| - 0.18 11.8 0.4 0.56 10.2 0.1 1.9 2 0 0 2 2 2 0 Siphovirus Gp157 RNase_PH PF01138.21 gi|297527572|ref|YP_003669596.1| - 3.1e-35 121.6 0.0 4e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|297527572|ref|YP_003669596.1| - 8.2e-13 48.2 0.3 1.6e-12 47.2 0.3 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.29 gi|297527573|ref|YP_003669597.1| - 3.5e-08 33.2 1.0 9.2e-08 31.8 0.4 2.2 2 1 0 2 2 2 1 KH domain KH_6 PF15985.5 gi|297527573|ref|YP_003669597.1| - 1.6e-07 31.5 0.1 2.8e-07 30.8 0.1 1.4 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|297527573|ref|YP_003669597.1| - 3.7e-05 23.5 0.4 9e-05 22.2 0.4 1.6 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|297527573|ref|YP_003669597.1| - 0.096 12.5 0.0 0.27 11.1 0.0 1.8 1 1 0 1 1 1 0 Exosome complex exonuclease RRP4 N-terminal region SBDS PF01172.18 gi|297527574|ref|YP_003669598.1| - 1.9e-21 75.9 0.1 3.3e-21 75.2 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|297527574|ref|YP_003669598.1| - 3.3e-21 75.5 1.1 5.5e-21 74.8 1.1 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|297527574|ref|YP_003669598.1| - 0.00083 19.3 0.0 0.002 18.1 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF2746 PF10874.8 gi|297527574|ref|YP_003669598.1| - 0.019 15.4 0.3 0.7 10.3 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2746) Proteasome PF00227.26 gi|297527575|ref|YP_003669599.1| - 9e-59 198.2 0.3 1.1e-58 197.8 0.3 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|297527575|ref|YP_003669599.1| - 2.2e-14 52.8 0.6 1.1e-13 50.6 0.3 2.3 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|297527576|ref|YP_003669600.1| - 2e-15 56.9 0.1 2.8e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|297527577|ref|YP_003669601.1| - 3.8e-10 39.6 2.1 5.1e-10 39.2 2.1 1.2 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.17 gi|297527578|ref|YP_003669602.1| - 2.1e-35 121.6 0.8 2.6e-35 121.3 0.8 1.1 1 0 0 1 1 1 1 RNA binding Thioredoxin_6 PF13848.6 gi|297527578|ref|YP_003669602.1| - 0.096 12.6 0.1 0.16 11.8 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain Aegerolysin PF06355.13 gi|297527578|ref|YP_003669602.1| - 0.11 12.6 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Aegerolysin Ribosomal_L15e PF00827.17 gi|297527579|ref|YP_003669603.1| - 3.3e-84 281.4 8.5 4.3e-84 281.0 8.5 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.10 gi|297527580|ref|YP_003669604.1| - 8.9e-38 129.3 0.1 1.5e-37 128.6 0.1 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|297527580|ref|YP_003669604.1| - 3.1e-21 75.6 0.1 1.2e-20 73.6 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|297527580|ref|YP_003669604.1| - 9.3e-15 54.4 0.0 3.4e-14 52.6 0.0 1.9 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|297527580|ref|YP_003669604.1| - 2e-05 24.2 3.0 6e-05 22.6 0.1 3.1 5 0 0 5 5 5 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|297527580|ref|YP_003669604.1| - 5e-05 23.4 0.1 0.0058 16.8 0.0 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|297527580|ref|YP_003669604.1| - 0.0015 18.1 1.3 1.1 8.7 0.1 3.3 4 0 0 4 4 4 2 Elongation factor Tu GTP binding domain AAA_23 PF13476.6 gi|297527580|ref|YP_003669604.1| - 0.022 15.2 0.2 0.053 14.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1_Xtn PF16897.5 gi|297527580|ref|YP_003669604.1| - 0.087 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|297527580|ref|YP_003669604.1| - 0.1 12.5 0.0 11 5.9 0.0 2.5 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|297527580|ref|YP_003669604.1| - 0.11 13.1 0.1 0.33 11.4 0.0 1.8 2 0 0 2 2 2 0 ABC transporter SRPRB PF09439.10 gi|297527580|ref|YP_003669604.1| - 0.16 11.4 0.1 22 4.4 0.0 2.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_21 PF13304.6 gi|297527580|ref|YP_003669604.1| - 0.16 11.7 0.4 0.29 10.9 0.4 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|297527580|ref|YP_003669604.1| - 0.18 11.6 0.0 0.38 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T4_gp9_10 PF07880.11 gi|297527580|ref|YP_003669604.1| - 0.22 11.1 0.8 1.4 8.4 0.0 2.3 3 0 0 3 3 3 0 Bacteriophage T4 gp9/10-like protein DUF2095 PF09868.9 gi|297527581|ref|YP_003669605.1| - 4.4e-19 68.7 0.6 1.9e-17 63.4 0.6 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) L27 PF02828.16 gi|297527581|ref|YP_003669605.1| - 0.0014 18.3 0.1 0.0027 17.4 0.1 1.4 1 0 0 1 1 1 1 L27 domain DED PF01335.21 gi|297527581|ref|YP_003669605.1| - 0.036 14.4 0.0 0.055 13.8 0.0 1.4 1 1 0 1 1 1 0 Death effector domain NTP_transferase PF00483.23 gi|297527582|ref|YP_003669606.1| - 3.7e-38 131.5 0.0 4.9e-38 131.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|297527582|ref|YP_003669606.1| - 2.6e-18 65.0 15.8 2.7e-06 26.9 0.1 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|297527582|ref|YP_003669606.1| - 1.9e-11 44.6 0.0 2.6e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|297527582|ref|YP_003669606.1| - 3.7e-07 30.1 0.0 5.2e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|297527582|ref|YP_003669606.1| - 3.9e-05 23.3 5.6 0.0054 16.4 0.1 4.2 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase CTP_transf_3 PF02348.19 gi|297527582|ref|YP_003669606.1| - 0.012 15.6 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase DUF4954 PF16314.5 gi|297527582|ref|YP_003669606.1| - 0.032 12.4 0.3 0.05 11.7 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Ribosomal_S3Ae PF01015.18 gi|297527583|ref|YP_003669607.1| - 1.5e-68 230.4 2.4 1.8e-68 230.1 2.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribosomal_S13_N PF08069.12 gi|297527586|ref|YP_003669610.1| - 5.4e-24 84.0 0.1 1e-23 83.1 0.1 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|297527586|ref|YP_003669610.1| - 1.4e-16 60.5 0.3 2.2e-16 59.8 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Ham1p_like PF01725.16 gi|297527587|ref|YP_003669611.1| - 5e-43 147.2 0.0 5.7e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.22 gi|297527588|ref|YP_003669612.1| - 5.6e-13 48.9 0.0 7.6e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|297527588|ref|YP_003669612.1| - 3.1e-11 43.1 0.1 4.4e-11 42.6 0.1 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|297527588|ref|YP_003669612.1| - 2.8e-08 33.4 0.0 3.2e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|297527588|ref|YP_003669612.1| - 5.2e-08 32.5 0.0 1.2e-07 31.3 0.0 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|297527588|ref|YP_003669612.1| - 2.4e-07 30.9 0.0 0.00011 22.2 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|297527588|ref|YP_003669612.1| - 0.00068 19.3 0.1 0.00083 19.0 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|297527588|ref|YP_003669612.1| - 0.14 11.8 0.9 1.4 8.5 0.0 2.3 2 1 1 3 3 3 0 Choline/ethanolamine kinase Peptidase_M22 PF00814.25 gi|297527589|ref|YP_003669613.1| - 6.2e-73 245.8 0.0 7.7e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.19 gi|297527590|ref|YP_003669614.1| - 8.4e-13 48.3 2.8 9.6e-13 48.1 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.16 gi|297527590|ref|YP_003669614.1| - 0.0012 18.7 0.2 0.0024 17.7 0.2 1.6 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|297527590|ref|YP_003669614.1| - 0.0038 17.1 4.7 0.019 14.9 4.7 1.9 1 1 0 1 1 1 1 Nudix N-terminal C1_1 PF00130.22 gi|297527590|ref|YP_003669614.1| - 0.0044 16.9 1.4 0.0057 16.5 1.4 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|297527590|ref|YP_003669614.1| - 0.0076 16.2 0.5 0.0084 16.0 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|297527590|ref|YP_003669614.1| - 0.017 15.1 3.6 0.022 14.7 3.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|297527590|ref|YP_003669614.1| - 0.018 15.1 1.1 0.022 14.8 1.1 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Rubredoxin_2 PF18073.1 gi|297527590|ref|YP_003669614.1| - 0.021 14.6 3.1 2.9 7.7 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain PriA_CRR PF18319.1 gi|297527590|ref|YP_003669614.1| - 0.023 14.7 1.3 0.087 12.8 1.3 2.0 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain TF_Zn_Ribbon PF08271.12 gi|297527590|ref|YP_003669614.1| - 0.028 13.9 4.1 2.8 7.5 0.3 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|297527590|ref|YP_003669614.1| - 0.028 13.8 8.0 0.035 13.5 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|297527590|ref|YP_003669614.1| - 0.037 14.2 0.7 0.042 14.0 0.7 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF35_N PF12172.8 gi|297527590|ref|YP_003669614.1| - 0.043 13.7 2.0 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.10 gi|297527590|ref|YP_003669614.1| - 0.06 13.1 3.5 0.78 9.5 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.6 gi|297527590|ref|YP_003669614.1| - 0.061 13.7 3.1 0.078 13.4 3.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|297527590|ref|YP_003669614.1| - 0.07 12.9 7.9 0.07 12.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|297527590|ref|YP_003669614.1| - 0.099 12.6 2.1 1.1 9.3 0.3 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 Zn_ribbon_recom PF13408.6 gi|297527590|ref|YP_003669614.1| - 0.13 12.8 3.1 0.24 11.9 3.1 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf_C2H2_10 PF18414.1 gi|297527590|ref|YP_003669614.1| - 0.17 11.4 4.7 4.3 7.0 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1451 PF07295.11 gi|297527590|ref|YP_003669614.1| - 0.17 11.9 0.7 0.19 11.8 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|297527590|ref|YP_003669614.1| - 0.32 11.1 6.6 0.34 11.1 1.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|297527590|ref|YP_003669614.1| - 0.35 11.4 5.7 5 7.7 0.4 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf_UBZ PF18439.1 gi|297527590|ref|YP_003669614.1| - 0.37 10.4 2.7 0.66 9.6 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|297527590|ref|YP_003669614.1| - 4.7 7.3 9.5 1.3 9.1 2.5 2.2 1 1 1 2 2 2 0 YhfH-like protein ADK_lid PF05191.14 gi|297527590|ref|YP_003669614.1| - 6.6 6.8 8.9 11 6.1 1.3 2.3 2 1 1 3 3 3 0 Adenylate kinase, active site lid Ribosomal_S24e PF01282.19 gi|297527591|ref|YP_003669615.1| - 1.1e-23 82.9 0.1 1.5e-23 82.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e RNA_helicase PF00910.22 gi|297527591|ref|YP_003669615.1| - 0.0023 18.3 0.0 0.0033 17.8 0.0 1.2 1 0 0 1 1 1 1 RNA helicase DUF359 PF04019.12 gi|297527592|ref|YP_003669616.1| - 6.5e-16 58.1 0.2 9.4e-16 57.6 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.13 gi|297527593|ref|YP_003669617.1| - 5e-16 58.6 0.1 5.9e-16 58.3 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.6 gi|297527593|ref|YP_003669617.1| - 8.7e-05 22.1 2.0 0.00013 21.6 2.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|297527593|ref|YP_003669617.1| - 0.0027 17.7 2.1 0.0038 17.2 2.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|297527593|ref|YP_003669617.1| - 0.0036 16.6 0.8 0.0055 16.1 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|297527593|ref|YP_003669617.1| - 0.0048 17.0 3.3 0.0073 16.4 3.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|297527593|ref|YP_003669617.1| - 0.0056 17.4 1.7 0.0071 17.1 1.7 1.1 1 0 0 1 1 1 1 zinc-ribbon family HypA PF01155.19 gi|297527593|ref|YP_003669617.1| - 0.0068 16.4 0.4 0.0078 16.2 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|297527593|ref|YP_003669617.1| - 0.024 14.2 1.1 0.049 13.2 0.2 2.0 2 1 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.6 gi|297527593|ref|YP_003669617.1| - 0.028 13.2 0.5 0.032 13.0 0.5 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TackOD1 PF18551.1 gi|297527593|ref|YP_003669617.1| - 0.029 14.1 0.6 0.037 13.7 0.6 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|297527593|ref|YP_003669617.1| - 0.032 14.4 4.6 0.24 11.6 4.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-C4H2 PF10146.9 gi|297527593|ref|YP_003669617.1| - 0.033 14.5 2.9 0.042 14.2 2.9 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein DUF35_N PF12172.8 gi|297527593|ref|YP_003669617.1| - 0.056 13.3 4.1 0.17 11.8 4.1 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prim_Zn_Ribbon PF08273.12 gi|297527593|ref|YP_003669617.1| - 0.063 13.6 1.4 0.17 12.2 0.1 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.7 gi|297527593|ref|YP_003669617.1| - 0.87 9.6 6.7 8 6.5 6.7 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain SHS2_Rpb7-N PF03876.17 gi|297527594|ref|YP_003669618.1| - 1.4e-17 63.8 0.0 2.4e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|297527594|ref|YP_003669618.1| - 2.8e-08 34.0 0.0 3.1e-06 27.4 0.0 2.5 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|297527594|ref|YP_003669618.1| - 0.00062 20.0 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|297527595|ref|YP_003669619.1| - 5.7e-26 91.1 0.3 6.6e-26 90.9 0.3 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|297527595|ref|YP_003669619.1| - 1e-06 29.0 0.0 1.4e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|297527595|ref|YP_003669619.1| - 1.8e-05 25.2 0.3 3.2e-05 24.4 0.3 1.3 1 1 0 1 1 1 1 PIN domain AvrM_N PF18247.1 gi|297527595|ref|YP_003669619.1| - 0.017 15.0 0.1 0.033 14.1 0.1 1.5 1 0 0 1 1 1 0 Flax-rust effector AvrM N-terminal domain PIN_4 PF13638.6 gi|297527595|ref|YP_003669619.1| - 0.026 14.8 0.3 0.11 12.8 0.3 1.9 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.6 gi|297527595|ref|YP_003669619.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) PIN_10 PF18478.1 gi|297527595|ref|YP_003669619.1| - 0.076 13.2 0.1 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 PIN like domain DUF5615 PF18480.1 gi|297527595|ref|YP_003669619.1| - 0.095 12.5 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) GTP_EFTU PF00009.27 gi|297527596|ref|YP_003669620.1| - 5.3e-29 101.2 0.1 2.2e-28 99.1 0.1 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|297527596|ref|YP_003669620.1| - 9.5e-27 93.1 2.0 1.9e-26 92.1 2.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|297527596|ref|YP_003669620.1| - 1.6e-07 31.6 0.9 3.4e-06 27.3 0.8 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|297527596|ref|YP_003669620.1| - 6.7e-07 29.4 0.2 2.1e-05 24.5 0.1 2.1 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|297527596|ref|YP_003669620.1| - 7e-05 22.9 0.0 0.00017 21.6 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|297527596|ref|YP_003669620.1| - 0.00075 19.3 0.1 0.73 9.6 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|297527596|ref|YP_003669620.1| - 0.006 16.6 0.1 0.013 15.5 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|297527596|ref|YP_003669620.1| - 0.087 12.3 0.9 4.8 6.7 0.1 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S6e PF01092.19 gi|297527597|ref|YP_003669621.1| - 7.8e-33 113.1 0.2 2.8e-32 111.3 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S6e GTP_EFTU_D4 PF14578.6 gi|297527598|ref|YP_003669622.1| - 7.2e-39 131.6 1.4 2.9e-38 129.6 1.4 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|297527598|ref|YP_003669622.1| - 3.7e-32 111.4 0.0 1.5e-31 109.4 0.0 2.0 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|297527598|ref|YP_003669622.1| - 9.6e-25 86.7 2.3 3.1e-24 85.1 2.1 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|297527598|ref|YP_003669622.1| - 1.7e-12 47.5 0.2 1.7e-12 47.5 0.2 3.2 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|297527598|ref|YP_003669622.1| - 2e-07 31.1 0.2 1.7e-06 28.1 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|297527598|ref|YP_003669622.1| - 4.2e-05 23.7 0.0 0.00026 21.2 0.0 2.4 3 0 0 3 3 3 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|297527598|ref|YP_003669622.1| - 0.0026 17.8 0.1 0.13 12.3 0.0 3.1 3 0 0 3 3 3 1 Dynamin family Ras PF00071.22 gi|297527598|ref|YP_003669622.1| - 0.018 14.7 0.0 0.11 12.2 0.0 2.4 1 1 0 1 1 1 0 Ras family RsgA_GTPase PF03193.16 gi|297527598|ref|YP_003669622.1| - 0.02 14.8 0.1 0.72 9.7 0.0 3.2 3 1 0 3 3 3 0 RsgA GTPase Arf PF00025.21 gi|297527598|ref|YP_003669622.1| - 0.028 13.9 0.0 7.1 6.1 0.0 3.3 4 0 0 4 4 4 0 ADP-ribosylation factor family DLIC PF05783.11 gi|297527598|ref|YP_003669622.1| - 0.061 12.1 0.1 0.63 8.8 0.0 2.0 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA PF00004.29 gi|297527598|ref|YP_003669622.1| - 0.15 12.5 0.0 0.96 9.9 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NDK PF00334.19 gi|297527599|ref|YP_003669623.1| - 2e-59 199.5 0.0 2.2e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|297527600|ref|YP_003669624.1| - 2.7e-23 82.0 0.8 2.8e-23 81.9 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|297527600|ref|YP_003669624.1| - 1.7e-07 31.0 0.9 2.4e-07 30.6 0.9 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|297527600|ref|YP_003669624.1| - 0.0049 16.3 0.5 0.0077 15.7 0.5 1.3 1 1 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 YHS PF04945.13 gi|297527600|ref|YP_003669624.1| - 0.04 14.0 0.1 0.059 13.5 0.1 1.2 1 0 0 1 1 1 0 YHS domain DUF3268 PF11672.8 gi|297527600|ref|YP_003669624.1| - 0.079 13.3 0.1 0.081 13.2 0.1 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain NosL PF05573.12 gi|297527600|ref|YP_003669624.1| - 0.082 13.3 0.0 0.096 13.0 0.0 1.1 1 0 0 1 1 1 0 NosL zf-C4_ClpX PF06689.13 gi|297527600|ref|YP_003669624.1| - 0.11 12.5 0.1 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger VATC PF18716.1 gi|297527600|ref|YP_003669624.1| - 0.15 12.0 3.9 0.55 10.1 3.9 1.8 1 1 0 1 1 1 0 Vms1-associating treble clef domain DUF2116 PF09889.9 gi|297527600|ref|YP_003669624.1| - 0.16 11.9 1.5 2 8.4 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ribosomal_S28e PF01200.18 gi|297527601|ref|YP_003669625.1| - 5.3e-31 106.4 4.1 7.1e-31 106.0 4.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S28e potato_inhibit PF00280.18 gi|297527601|ref|YP_003669625.1| - 0.16 12.7 2.9 1.7 9.4 2.9 2.1 1 1 0 1 1 1 0 Potato inhibitor I family Ribosomal_L7Ae PF01248.26 gi|297527602|ref|YP_003669626.1| - 3.2e-31 106.9 0.6 4e-31 106.6 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|297527602|ref|YP_003669626.1| - 6.4e-05 22.8 0.1 9.7e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|297527602|ref|YP_003669626.1| - 0.015 15.3 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 FAM25 PF15825.5 gi|297527602|ref|YP_003669626.1| - 0.066 13.6 2.7 0.44 10.9 0.6 2.3 2 0 0 2 2 2 0 FAM25 family tRNA-synt_1c PF00749.21 gi|297527603|ref|YP_003669627.1| - 1.8e-72 243.9 0.0 2.6e-72 243.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|297527603|ref|YP_003669627.1| - 3.5e-24 85.6 0.0 6.3e-24 84.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF2118 PF09891.9 gi|297527604|ref|YP_003669628.1| - 4.3e-27 94.9 3.5 5.1e-27 94.7 3.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) FMN_dh PF01070.18 gi|297527605|ref|YP_003669629.1| - 9.7e-19 67.6 0.0 1.4e-17 63.8 0.0 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Memo PF01875.17 gi|297527606|ref|YP_003669630.1| - 1.2e-80 270.5 0.0 1.4e-80 270.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein Ribosomal_S2 PF00318.20 gi|297527607|ref|YP_003669631.1| - 1.4e-24 86.5 0.0 7e-15 54.8 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_pol_N PF01194.17 gi|297527608|ref|YP_003669632.1| - 3.3e-31 107.4 0.2 3.7e-31 107.2 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|297527608|ref|YP_003669632.1| - 0.012 15.9 0.1 0.02 15.2 0.1 1.4 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|297527609|ref|YP_003669633.1| - 8.3e-34 116.7 0.0 9.5e-34 116.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|297527610|ref|YP_003669634.1| - 3.2e-12 46.8 2.8 4.6e-10 39.8 2.8 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|297527611|ref|YP_003669635.1| - 8e-11 41.7 0.2 8.5e-11 41.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|297527611|ref|YP_003669635.1| - 1e-07 32.7 0.7 1.4e-07 32.2 0.7 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PUA PF01472.20 gi|297527611|ref|YP_003669635.1| - 0.029 14.3 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 PUA domain HU-CCDC81_euk_1 PF14908.6 gi|297527611|ref|YP_003669635.1| - 0.064 13.4 0.0 0.076 13.2 0.0 1.3 1 1 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 RNA_pol_A_bac PF01000.26 gi|297527612|ref|YP_003669636.1| - 3.7e-29 101.3 0.0 9.4e-29 100.1 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|297527612|ref|YP_003669636.1| - 2.1e-16 59.1 0.0 2.6e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.7 gi|297527612|ref|YP_003669636.1| - 5.1e-09 36.6 1.4 0.00081 19.9 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|297527612|ref|YP_003669636.1| - 5e-08 33.8 3.1 0.0056 17.6 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|297527612|ref|YP_003669636.1| - 2.9e-07 30.0 14.3 0.00063 19.5 2.8 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|297527612|ref|YP_003669636.1| - 4.8e-07 29.6 13.5 0.0002 21.3 2.1 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|297527612|ref|YP_003669636.1| - 1.3e-06 28.5 8.2 3.1e-06 27.2 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|297527612|ref|YP_003669636.1| - 2.1e-06 27.5 9.7 0.00058 19.8 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|297527612|ref|YP_003669636.1| - 2.8e-05 24.1 10.4 0.00017 21.6 11.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|297527612|ref|YP_003669636.1| - 4.1e-05 23.9 3.2 0.15 12.5 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|297527612|ref|YP_003669636.1| - 0.0005 20.1 9.4 0.00098 19.2 9.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|297527612|ref|YP_003669636.1| - 0.0064 17.0 11.2 4 8.1 11.5 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|297527612|ref|YP_003669636.1| - 0.012 16.0 10.5 0.26 11.9 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|297527612|ref|YP_003669636.1| - 0.072 14.1 14.5 0.3 12.1 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|297527612|ref|YP_003669636.1| - 0.27 11.5 8.0 0.71 10.1 1.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.19 gi|297527613|ref|YP_003669637.1| - 2.8e-48 162.9 1.9 3.6e-48 162.5 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|297527613|ref|YP_003669637.1| - 0.15 11.7 0.1 0.19 11.5 0.1 1.1 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.25 gi|297527614|ref|YP_003669638.1| - 8.6e-16 57.4 0.1 2.2e-15 56.1 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|297527614|ref|YP_003669638.1| - 7.9e-06 26.7 1.0 1.8e-05 25.6 0.6 1.8 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|297527615|ref|YP_003669639.1| - 1.9e-45 154.4 0.1 2.2e-45 154.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|297527615|ref|YP_003669639.1| - 0.21 10.3 0.0 0.28 9.9 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S10 PF00338.22 gi|297527616|ref|YP_003669640.1| - 4.5e-26 90.9 0.2 5.1e-26 90.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|297527616|ref|YP_003669640.1| - 0.019 15.8 0.1 0.037 14.8 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|297527617|ref|YP_003669641.1| - 1.5e-53 181.3 0.0 2.1e-53 180.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|297527617|ref|YP_003669641.1| - 2.6e-36 124.3 0.0 1.6e-35 121.8 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|297527617|ref|YP_003669641.1| - 6.9e-15 55.2 2.2 1.5e-14 54.1 2.2 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|297527617|ref|YP_003669641.1| - 2.5e-05 24.1 0.6 7e-05 22.6 0.6 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|297527617|ref|YP_003669641.1| - 2.6e-05 24.3 0.0 0.00024 21.2 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|297527617|ref|YP_003669641.1| - 0.023 14.8 0.1 2.2 8.3 0.1 2.5 1 1 0 1 1 1 0 Dynamin family Septin PF00735.18 gi|297527617|ref|YP_003669641.1| - 0.045 13.0 0.0 0.13 11.5 0.0 1.7 1 1 0 1 1 1 0 Septin PduV-EutP PF10662.9 gi|297527617|ref|YP_003669641.1| - 0.14 11.9 0.1 4.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Ribosomal_S7 PF00177.21 gi|297527618|ref|YP_003669642.1| - 4.7e-42 143.1 0.2 6e-42 142.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DNase-RNase PF02577.14 gi|297527619|ref|YP_003669643.1| - 4.7e-07 29.5 0.0 6.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Ribosom_S12_S23 PF00164.25 gi|297527620|ref|YP_003669644.1| - 5.5e-47 158.1 0.4 5.5e-47 158.1 0.4 1.3 2 0 0 2 2 2 1 Ribosomal protein S12/S23 KH_5 PF13184.6 gi|297527621|ref|YP_003669645.1| - 2.3e-15 56.4 2.0 3.7e-14 52.5 0.1 2.3 2 1 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.17 gi|297527621|ref|YP_003669645.1| - 5.7e-13 48.5 3.5 8.7e-08 31.9 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|297527621|ref|YP_003669645.1| - 1.1e-06 28.5 0.3 0.0048 16.7 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|297527621|ref|YP_003669645.1| - 0.0015 18.3 0.3 0.31 10.9 0.0 2.5 2 0 0 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.26 gi|297527622|ref|YP_003669646.1| - 2.7e-22 78.3 0.0 3.3e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|297527623|ref|YP_003669647.1| - 4.1e-55 187.1 0.7 8.8e-55 186.0 0.7 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|297527624|ref|YP_003669648.1| - 2.2e-98 329.5 0.0 2.9e-98 329.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|297527624|ref|YP_003669648.1| - 2.4e-76 255.6 0.0 4e-76 254.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|297527624|ref|YP_003669648.1| - 2.3e-37 128.3 0.0 7.8e-37 126.6 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|297527624|ref|YP_003669648.1| - 2.4e-28 98.2 0.0 4.3e-28 97.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|297527624|ref|YP_003669648.1| - 1.2e-25 90.5 0.0 1.9e-25 89.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.10 gi|297527624|ref|YP_003669648.1| - 0.013 15.6 1.0 3.1 8.0 0.0 3.2 3 0 0 3 3 3 0 Zinc ribbon domain HypA PF01155.19 gi|297527624|ref|YP_003669648.1| - 0.44 10.6 1.4 0.75 9.8 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_32 PF13565.6 gi|297527624|ref|YP_003669648.1| - 0.46 11.1 2.8 6.5 7.5 0.0 4.0 4 1 1 5 5 4 0 Homeodomain-like domain zf-ribbon_3 PF13248.6 gi|297527624|ref|YP_003669648.1| - 0.73 9.3 6.1 0.8 9.2 0.3 2.9 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|297527624|ref|YP_003669648.1| - 5.1 7.1 10.0 1.7 8.7 0.3 2.8 3 0 0 3 3 3 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|297527624|ref|YP_003669648.1| - 9.2 6.4 7.0 1.8 8.7 1.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_pol_Rpb2_6 PF00562.28 gi|297527625|ref|YP_003669649.1| - 2.3e-133 445.0 0.1 3.3e-133 444.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|297527625|ref|YP_003669649.1| - 2.9e-43 147.8 0.0 4.4e-43 147.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|297527625|ref|YP_003669649.1| - 1.4e-30 105.5 0.1 2.7e-30 104.6 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 gi|297527625|ref|YP_003669649.1| - 3e-29 102.0 0.7 1.3e-28 99.9 0.7 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|297527625|ref|YP_003669649.1| - 2.3e-28 98.2 0.0 4.8e-28 97.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|297527625|ref|YP_003669649.1| - 1.1e-21 76.9 2.5 1.3e-21 76.7 0.7 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|297527625|ref|YP_003669649.1| - 2.1e-10 41.0 0.0 5.7e-10 39.6 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|297527625|ref|YP_003669649.1| - 0.03 14.6 0.5 0.31 11.3 0.1 2.9 3 0 0 3 3 3 0 RNA polymerase beta subunit external 1 domain DDR_swiveling PF18427.1 gi|297527625|ref|YP_003669649.1| - 0.1 12.6 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 DD-reactivating factor swiveling domain RNA_pol_Rpb5_C PF01191.19 gi|297527626|ref|YP_003669650.1| - 3e-32 110.3 0.1 3.5e-32 110.1 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Fe_hyd_lg_C PF02906.14 gi|297527626|ref|YP_003669650.1| - 0.1 12.2 0.0 0.1 12.2 0.0 1.0 1 0 0 1 1 1 0 Iron only hydrogenase large subunit, C-terminal domain HAD_2 PF13419.6 gi|297527627|ref|YP_003669651.1| - 1.2e-39 136.2 0.0 1.4e-39 136.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|297527627|ref|YP_003669651.1| - 2.4e-17 63.9 0.0 7.8e-17 62.3 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|297527627|ref|YP_003669651.1| - 2.4e-10 41.1 0.0 3.1e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|297527627|ref|YP_003669651.1| - 1.4e-09 37.9 0.0 3.4e-09 36.6 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|297527627|ref|YP_003669651.1| - 0.00026 21.0 0.0 0.23 11.6 0.0 2.8 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|297527627|ref|YP_003669651.1| - 0.00058 19.7 0.0 6.2 6.5 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_hellenicus_DSM_12710_uid45893/NC_014205.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_hellenicus_DSM_12710_uid45893/NC_014205.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_hellenicus_DSM_12710_uid45893/NC_014205.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_hellenicus_DSM_12710_uid45893/NC_014205.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:16:20 2019 # [ok]